# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- BPL_LplA_LipB PF03099.19 gi|55376943|ref|YP_134793.1| - 3e-18 66.0 0.0 4.5e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|55376943|ref|YP_134793.1| - 5.4e-11 42.3 0.0 1.1e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|55376943|ref|YP_134793.1| - 9.3e-11 41.5 0.1 2.4e-10 40.2 0.1 1.7 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.7 gi|55376943|ref|YP_134793.1| - 2.6e-06 27.4 0.1 6.3e-06 26.2 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|55376943|ref|YP_134793.1| - 5.6e-06 25.8 0.0 1.5e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55376943|ref|YP_134793.1| - 3.5e-05 23.6 0.0 5.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55376943|ref|YP_134793.1| - 0.00015 21.6 0.0 0.00047 20.0 0.0 1.9 1 0 0 1 1 1 1 MarR family BPL_LplA_LipB_2 PF16917.5 gi|55376943|ref|YP_134793.1| - 0.0026 17.3 0.2 0.0052 16.3 0.1 1.7 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family HTH_23 PF13384.6 gi|55376943|ref|YP_134793.1| - 0.026 14.3 0.0 0.064 13.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_39 PF14090.6 gi|55376943|ref|YP_134793.1| - 0.026 14.3 0.0 0.13 12.1 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|55376943|ref|YP_134793.1| - 0.031 14.2 1.4 0.23 11.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.6 gi|55376943|ref|YP_134793.1| - 0.084 12.7 0.4 0.23 11.3 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|55376943|ref|YP_134793.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain CPSase_L_D2 PF02786.17 gi|55376944|ref|YP_134794.1| - 2.8e-68 229.5 0.1 6.6e-68 228.4 0.1 1.6 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|55376944|ref|YP_134794.1| - 6.4e-45 152.2 0.2 1.7e-44 150.9 0.2 1.7 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|55376944|ref|YP_134794.1| - 1.7e-33 115.0 0.0 3.5e-33 113.9 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|55376944|ref|YP_134794.1| - 1.6e-18 66.3 4.1 1.6e-18 66.3 4.1 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|55376944|ref|YP_134794.1| - 3.1e-10 39.7 4.2 4.6e-07 29.6 0.0 2.8 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|55376944|ref|YP_134794.1| - 3.1e-06 26.9 0.0 7.1e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|55376944|ref|YP_134794.1| - 6.8e-06 26.0 0.0 1.3e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_3 PF13437.6 gi|55376944|ref|YP_134794.1| - 0.00012 22.8 0.3 1 10.1 0.1 2.7 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|55376944|ref|YP_134794.1| - 0.00017 20.9 0.4 0.13 11.4 0.1 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Dala_Dala_lig_C PF07478.13 gi|55376944|ref|YP_134794.1| - 0.002 17.7 0.1 0.0065 16.0 0.0 1.8 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus GCV_H PF01597.19 gi|55376944|ref|YP_134794.1| - 0.014 15.3 1.4 0.041 13.8 1.4 1.8 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.20 gi|55376944|ref|YP_134794.1| - 0.06 13.1 0.6 0.32 10.8 0.1 2.4 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YqfD PF06898.11 gi|55376944|ref|YP_134794.1| - 0.85 8.4 3.3 1.9 7.3 1.5 2.3 2 1 0 2 2 2 0 Putative stage IV sporulation protein YqfD Carboxyl_trans PF01039.22 gi|55376946|ref|YP_134796.1| - 4.1e-183 609.5 0.2 4.6e-183 609.4 0.2 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|55376946|ref|YP_134796.1| - 0.0026 17.3 0.6 0.047 13.2 0.0 2.2 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) UDG PF03167.19 gi|55376947|ref|YP_134797.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily MarR_2 PF12802.7 gi|55376948|ref|YP_134798.1| - 2.3e-06 27.4 0.8 6.7e-06 25.9 0.3 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|55376948|ref|YP_134798.1| - 5.1e-05 23.1 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|55376948|ref|YP_134798.1| - 0.00019 21.3 0.0 0.00035 20.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55376948|ref|YP_134798.1| - 0.00028 20.8 0.1 0.00075 19.4 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|55376948|ref|YP_134798.1| - 0.001 18.8 1.1 0.0021 17.8 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF1724 PF08350.10 gi|55376948|ref|YP_134798.1| - 0.0024 18.0 0.0 0.0048 17.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|55376948|ref|YP_134798.1| - 0.0078 16.3 1.7 0.032 14.3 0.1 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|55376948|ref|YP_134798.1| - 0.0086 16.2 0.0 0.035 14.2 0.0 1.9 2 0 0 2 2 2 1 Trp repressor protein HTH_28 PF13518.6 gi|55376948|ref|YP_134798.1| - 0.024 14.8 0.1 0.058 13.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TNRC6-PABC_bdg PF16608.5 gi|55376948|ref|YP_134798.1| - 0.14 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 TNRC6-PABC binding domain EamA PF00892.20 gi|55376949|ref|YP_134799.1| - 3.5e-35 121.2 40.0 9.6e-20 71.2 10.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family SNF PF00209.18 gi|55376951|ref|YP_134801.1| - 5.6e-49 167.2 35.2 7.7e-25 87.6 17.8 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short_C2 PF13561.6 gi|55376952|ref|YP_134802.1| - 1.8e-40 138.9 0.1 4e-40 137.8 0.1 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55376952|ref|YP_134802.1| - 1.3e-37 129.2 0.0 1.5e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|55376952|ref|YP_134802.1| - 3e-05 23.6 0.3 6e-05 22.6 0.0 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|55376952|ref|YP_134802.1| - 5.2e-05 23.2 0.1 9.8e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|55376952|ref|YP_134802.1| - 0.0026 17.2 0.0 0.0035 16.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase ADH_zinc_N_2 PF13602.6 gi|55376953|ref|YP_134803.1| - 2.3e-17 64.3 0.4 3.9e-17 63.6 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|55376953|ref|YP_134803.1| - 2.7e-12 46.8 0.3 4.4e-12 46.1 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|55376953|ref|YP_134803.1| - 1e-09 38.2 0.0 2.5e-07 30.5 0.0 2.4 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain DUF2201 PF09967.9 gi|55376953|ref|YP_134803.1| - 0.069 13.3 0.0 5.9 7.1 0.0 2.3 2 0 0 2 2 2 0 VWA-like domain (DUF2201) Gly_rich_SFCGS PF14272.6 gi|55376953|ref|YP_134803.1| - 0.12 12.4 0.6 0.37 10.8 0.6 1.8 1 0 0 1 1 1 0 Glycine-rich SFCGS MCPsignal PF00015.21 gi|55376954|ref|YP_134804.1| - 3.2e-42 144.3 22.7 3.2e-42 144.3 22.7 5.1 2 2 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|55376954|ref|YP_134804.1| - 3.7e-12 46.4 15.7 1.6e-11 44.4 0.3 5.2 4 1 0 4 4 3 2 HAMP domain dCache_1 PF02743.18 gi|55376954|ref|YP_134804.1| - 4.8e-10 39.6 0.0 4.8e-10 39.6 0.0 4.0 3 2 1 4 4 4 1 Cache domain DUF948 PF06103.11 gi|55376954|ref|YP_134804.1| - 3.8e-06 27.1 47.2 0.027 14.7 2.7 7.2 4 2 2 6 6 6 3 Bacterial protein of unknown function (DUF948) DUF3584 PF12128.8 gi|55376954|ref|YP_134804.1| - 0.0027 15.3 30.3 0.0044 14.6 30.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF1664 PF07889.12 gi|55376954|ref|YP_134804.1| - 0.0035 17.4 33.2 0.16 12.0 2.3 5.5 3 2 2 5 5 5 3 Protein of unknown function (DUF1664) Htr2 PF17909.1 gi|55376954|ref|YP_134804.1| - 0.011 16.0 0.7 0.011 16.0 0.7 3.4 5 0 0 5 5 1 0 Htr2 transmembrane domain Prominin PF05478.11 gi|55376954|ref|YP_134804.1| - 0.012 13.7 14.9 0.0097 13.9 5.2 2.4 1 1 0 2 2 2 0 Prominin Spc7 PF08317.11 gi|55376954|ref|YP_134804.1| - 0.044 12.7 38.7 0.019 13.9 9.1 3.5 2 2 1 3 3 3 0 Spc7 kinetochore protein sCache_3_2 PF17203.4 gi|55376954|ref|YP_134804.1| - 0.15 12.2 0.0 0.15 12.2 0.0 4.4 5 0 0 5 5 5 0 Single cache domain 3 Serine_rich PF08824.10 gi|55376954|ref|YP_134804.1| - 0.18 11.8 8.7 7.5 6.5 0.3 3.5 2 1 1 3 3 3 0 Serine rich protein interaction domain Barstar PF01337.18 gi|55376954|ref|YP_134804.1| - 0.2 11.7 3.1 15 5.6 0.1 3.7 3 0 0 3 3 3 0 Barstar (barnase inhibitor) CorA PF01544.18 gi|55376954|ref|YP_134804.1| - 0.23 10.7 25.0 0.013 14.9 1.8 4.7 3 2 2 5 5 5 0 CorA-like Mg2+ transporter protein Syntaxin-6_N PF09177.11 gi|55376954|ref|YP_134804.1| - 0.29 11.7 29.8 0.4 11.3 3.0 5.1 2 2 2 5 5 5 0 Syntaxin 6, N-terminal PspB PF06667.12 gi|55376954|ref|YP_134804.1| - 0.51 10.4 7.0 0.39 10.8 0.3 3.7 3 1 0 3 3 2 0 Phage shock protein B Jnk-SapK_ap_N PF09744.9 gi|55376954|ref|YP_134804.1| - 1.2 9.3 31.8 0.35 11.1 2.5 4.2 2 2 2 4 4 4 0 JNK_SAPK-associated protein-1 LOH1CR12 PF10158.9 gi|55376954|ref|YP_134804.1| - 1.3 9.0 13.4 0.64 10.0 0.9 4.1 2 2 3 5 5 5 0 Tumour suppressor protein CALCOCO1 PF07888.11 gi|55376954|ref|YP_134804.1| - 1.6 7.5 38.4 3 6.6 22.1 2.4 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like SKA1 PF07160.12 gi|55376954|ref|YP_134804.1| - 1.7 8.5 24.6 0.15 11.9 1.5 3.4 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 1 Fib_alpha PF08702.10 gi|55376954|ref|YP_134804.1| - 1.9 8.7 22.2 4.2 7.5 1.1 5.0 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|55376954|ref|YP_134804.1| - 2.2 8.7 27.2 0.47 10.9 3.0 3.5 3 0 0 3 3 3 0 Fez1 MAD PF05557.13 gi|55376954|ref|YP_134804.1| - 2.7 6.2 30.1 0.12 10.7 3.6 2.1 2 0 0 2 2 2 0 Mitotic checkpoint protein Lectin_N PF03954.14 gi|55376954|ref|YP_134804.1| - 5 6.9 11.7 1.3 8.8 0.8 4.6 4 1 0 4 4 4 0 Hepatic lectin, N-terminal domain Bac_rhodopsin PF01036.18 gi|55376955|ref|YP_134805.1| - 4.8e-64 216.0 25.7 5.5e-64 215.8 25.7 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein TFIIB PF00382.19 gi|55376957|ref|YP_134807.1| - 3.8e-48 161.4 1.8 1e-25 89.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55376957|ref|YP_134807.1| - 4.3e-15 55.0 3.7 8.3e-15 54.0 3.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|55376957|ref|YP_134807.1| - 0.021 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Cyclin, N-terminal domain DUF2318 PF10080.9 gi|55376957|ref|YP_134807.1| - 0.023 14.8 0.3 0.054 13.6 0.3 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) OrfB_Zn_ribbon PF07282.11 gi|55376957|ref|YP_134807.1| - 0.026 14.4 2.7 0.04 13.9 1.2 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Cyclin_C PF02984.19 gi|55376957|ref|YP_134807.1| - 0.035 14.2 0.0 1 9.5 0.0 2.2 1 1 1 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|55376957|ref|YP_134807.1| - 0.067 12.7 1.1 0.37 10.4 0.1 2.8 3 1 0 3 3 3 0 Sigma-70, region 4 RB_B PF01857.20 gi|55376957|ref|YP_134807.1| - 0.11 12.5 0.0 0.41 10.7 0.0 1.7 1 1 0 2 2 2 0 Retinoblastoma-associated protein B domain PhnA_Zn_Ribbon PF08274.12 gi|55376957|ref|YP_134807.1| - 3.1 7.8 6.3 10 6.2 6.3 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon SpoU_methylase PF00588.19 gi|55376959|ref|YP_134809.1| - 8.3e-29 100.6 0.0 1.1e-28 100.1 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Lactamase_B_6 PF16661.5 gi|55376959|ref|YP_134809.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain BAT PF15915.5 gi|55376960|ref|YP_134810.1| - 5.1e-37 127.2 4.4 2.5e-36 124.9 4.4 2.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|55376960|ref|YP_134810.1| - 3.9e-22 78.6 0.9 5.6e-13 49.1 0.1 3.4 3 0 0 3 3 3 2 PAS fold HTH_10 PF04967.12 gi|55376960|ref|YP_134810.1| - 1e-18 66.9 0.1 2.8e-18 65.4 0.1 1.9 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|55376960|ref|YP_134810.1| - 1.1e-16 61.3 0.0 6.7e-08 32.9 0.0 2.7 2 0 0 2 2 2 2 GAF domain GAF_2 PF13185.6 gi|55376960|ref|YP_134810.1| - 1.2e-16 61.2 2.5 5.5e-08 33.2 0.1 3.3 3 1 1 4 4 4 2 GAF domain GAF PF01590.26 gi|55376960|ref|YP_134810.1| - 3e-13 50.5 0.1 3.5e-10 40.6 0.0 3.1 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|55376960|ref|YP_134810.1| - 4.8e-08 33.0 0.0 4.5e-06 26.6 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|55376960|ref|YP_134810.1| - 5.5e-07 29.8 0.0 0.003 17.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain HTH_20 PF12840.7 gi|55376960|ref|YP_134810.1| - 0.001 19.1 0.1 0.011 15.8 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|55376960|ref|YP_134810.1| - 0.0084 15.9 0.0 0.028 14.2 0.0 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain PAS_10 PF13596.6 gi|55376960|ref|YP_134810.1| - 0.04 14.5 0.0 0.17 12.5 0.0 2.1 2 0 0 2 2 2 0 PAS domain HTH_24 PF13412.6 gi|55376960|ref|YP_134810.1| - 0.041 13.5 0.1 0.15 11.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55376960|ref|YP_134810.1| - 0.098 12.6 0.0 0.39 10.6 0.0 2.1 1 0 0 1 1 1 0 MarR family GatB_N PF02934.15 gi|55376963|ref|YP_134813.1| - 5.7e-65 219.4 0.0 7.3e-65 219.1 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|55376963|ref|YP_134813.1| - 2.3e-20 73.0 0.0 4e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|55376963|ref|YP_134813.1| - 1.1e-15 57.6 0.0 2.1e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|55376963|ref|YP_134813.1| - 0.0073 16.4 0.2 0.013 15.5 0.2 1.4 1 0 0 1 1 1 1 Yqey-like protein potato_inhibit PF00280.18 gi|55376964|ref|YP_134814.1| - 0.034 14.8 0.1 3.9 8.2 0.0 2.4 2 0 0 2 2 2 0 Potato inhibitor I family Acetyltransf_10 PF13673.7 gi|55376966|ref|YP_134816.1| - 2.5e-19 69.5 0.0 3.3e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55376966|ref|YP_134816.1| - 3.6e-18 65.9 0.1 4.6e-18 65.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55376966|ref|YP_134816.1| - 1.1e-14 54.6 0.1 1.6e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55376966|ref|YP_134816.1| - 3e-10 39.9 0.0 4.7e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|55376966|ref|YP_134816.1| - 5.4e-10 39.6 0.0 6.1e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55376966|ref|YP_134816.1| - 2.3e-07 30.9 0.1 6.2e-07 29.5 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55376966|ref|YP_134816.1| - 4.1e-07 30.7 0.1 4.9e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|55376966|ref|YP_134816.1| - 0.00047 20.1 0.0 0.00082 19.3 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.7 gi|55376966|ref|YP_134816.1| - 0.00064 19.9 0.2 0.00083 19.5 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55376966|ref|YP_134816.1| - 0.0055 16.8 0.0 0.0099 16.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|55376966|ref|YP_134816.1| - 0.021 14.5 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_15 PF17013.5 gi|55376966|ref|YP_134816.1| - 0.033 13.7 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase DUF4214 PF13946.6 gi|55376966|ref|YP_134816.1| - 0.12 12.5 0.1 0.33 11.0 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4214) Acetyltransf_16 PF05301.11 gi|55376966|ref|YP_134816.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Lyase_1 PF00206.20 gi|55376967|ref|YP_134817.1| - 1.3e-105 353.3 0.0 1.8e-105 352.8 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|55376967|ref|YP_134817.1| - 2e-24 85.7 0.2 6e-24 84.2 0.2 1.9 1 0 0 1 1 1 1 Fumarase C C-terminus Capsule_synth PF05159.14 gi|55376967|ref|YP_134817.1| - 0.017 14.6 0.0 0.43 10.0 0.0 2.2 2 0 0 2 2 2 0 Capsule polysaccharide biosynthesis protein ADSL_C PF10397.9 gi|55376967|ref|YP_134817.1| - 0.053 14.1 0.3 0.053 14.1 0.3 2.9 4 1 0 4 4 4 0 Adenylosuccinate lyase C-terminus SpoVIF PF14069.6 gi|55376967|ref|YP_134817.1| - 0.098 12.4 0.2 2 8.3 0.0 2.5 2 0 0 2 2 2 0 Stage VI sporulation protein F BPD_transp_1 PF00528.22 gi|55376968|ref|YP_134818.1| - 1.8e-18 67.0 21.7 1.8e-18 67.0 21.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55376969|ref|YP_134819.1| - 8.9e-13 48.4 18.1 8.9e-13 48.4 18.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.16 gi|55376969|ref|YP_134819.1| - 0.0037 17.0 0.9 0.0037 17.0 0.9 2.7 3 0 0 3 3 3 1 MotA/TolQ/ExbB proton channel family ABC_tran PF00005.27 gi|55376970|ref|YP_134820.1| - 5.8e-34 117.5 0.0 1.1e-33 116.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|55376970|ref|YP_134820.1| - 1e-09 39.0 0.0 7.2e-09 36.4 0.0 2.5 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|55376970|ref|YP_134820.1| - 1e-06 28.8 0.0 2.5e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|55376970|ref|YP_134820.1| - 1.6e-05 24.9 0.0 0.19 11.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55376970|ref|YP_134820.1| - 0.00017 21.1 0.1 0.0011 18.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55376970|ref|YP_134820.1| - 0.00069 19.9 0.1 0.0015 18.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|55376970|ref|YP_134820.1| - 0.0034 17.3 0.0 0.0087 16.0 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|55376970|ref|YP_134820.1| - 0.0037 17.2 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|55376970|ref|YP_134820.1| - 0.0047 16.7 0.0 0.073 12.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|55376970|ref|YP_134820.1| - 0.0092 16.4 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|55376970|ref|YP_134820.1| - 0.021 15.4 0.0 0.14 12.8 0.0 2.4 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AAA PF00004.29 gi|55376970|ref|YP_134820.1| - 0.045 14.2 0.0 0.21 12.0 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|55376970|ref|YP_134820.1| - 0.049 13.2 0.0 3.5 7.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|55376970|ref|YP_134820.1| - 0.055 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain HAS-barrel PF09378.10 gi|55376970|ref|YP_134820.1| - 0.069 13.3 0.2 3.6 7.8 0.0 2.9 3 0 0 3 3 3 0 HAS barrel domain TOBE PF03459.17 gi|55376970|ref|YP_134820.1| - 0.11 12.7 0.0 0.63 10.4 0.0 2.2 2 0 0 2 2 2 0 TOBE domain AAA_5 PF07728.14 gi|55376970|ref|YP_134820.1| - 0.18 11.8 0.6 1 9.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|55376970|ref|YP_134820.1| - 0.21 12.1 0.1 0.67 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain XPG_I PF00867.18 gi|55376971|ref|YP_134821.1| - 2.6e-20 72.6 0.0 5e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|55376971|ref|YP_134821.1| - 1.5e-12 47.8 0.0 2.4e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|55376971|ref|YP_134821.1| - 3.6e-05 24.3 0.3 9.2e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|55376971|ref|YP_134821.1| - 0.094 13.3 0.0 0.24 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Acetyltransf_1 PF00583.25 gi|55376972|ref|YP_134822.1| - 0.00014 22.1 0.1 0.00024 21.3 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family DUF3054 PF11255.8 gi|55376973|ref|YP_134823.1| - 1.5e-19 70.5 10.4 1.8e-19 70.3 10.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) Peptidase_U4 PF03419.13 gi|55376973|ref|YP_134823.1| - 3.4 6.9 7.5 4.4 6.5 7.5 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA OCD_Mu_crystall PF02423.15 gi|55376976|ref|YP_134826.1| - 1.3e-64 218.2 0.7 1.6e-64 217.9 0.7 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|55376976|ref|YP_134826.1| - 0.00034 20.7 0.0 0.00057 20.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|55376976|ref|YP_134826.1| - 0.0032 18.0 0.3 0.0073 16.9 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|55376976|ref|YP_134826.1| - 0.037 14.2 0.1 0.063 13.4 0.1 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NmrA PF05368.13 gi|55376976|ref|YP_134826.1| - 0.069 12.7 0.1 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family SPP PF06550.11 gi|55376977|ref|YP_134827.1| - 2.9e-89 299.3 22.2 4.4e-89 298.7 22.2 1.3 1 1 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Presenilin PF01080.17 gi|55376977|ref|YP_134827.1| - 3.1e-06 26.2 11.5 0.0092 14.8 0.0 2.8 2 1 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.13 gi|55376977|ref|YP_134827.1| - 0.00014 21.5 8.1 0.0014 18.2 0.9 2.6 2 1 0 2 2 2 2 Signal peptide peptidase Gar1 PF04410.14 gi|55376978|ref|YP_134828.1| - 1.2e-08 34.9 0.0 1.2e-08 34.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|55376979|ref|YP_134829.1| - 5.3e-24 85.0 0.0 6.3e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein ATP-grasp PF02222.22 gi|55376979|ref|YP_134829.1| - 0.01 15.4 0.1 0.015 14.9 0.1 1.3 1 1 0 1 1 1 0 ATP-grasp domain Phage_tail_APC PF16778.5 gi|55376979|ref|YP_134829.1| - 0.064 13.1 0.2 0.7 9.8 0.0 2.2 2 0 0 2 2 2 0 Phage tail assembly chaperone protein CAP PF00188.26 gi|55376980|ref|YP_134830.1| - 1.8e-05 25.6 0.0 6.1e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DUF4834 PF16118.5 gi|55376980|ref|YP_134830.1| - 0.1 13.6 0.1 4.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4834) Alpha_GJ PF03229.13 gi|55376980|ref|YP_134830.1| - 1.1 9.8 7.0 1.7 9.2 7.0 1.2 1 0 0 1 1 1 0 Alphavirus glycoprotein J COX2 PF00116.20 gi|55376981|ref|YP_134831.1| - 2.9e-15 56.2 0.0 6.2e-15 55.1 0.0 1.5 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|55376981|ref|YP_134831.1| - 4.9e-12 45.8 0.9 7.5e-12 45.2 0.9 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DctQ PF04290.12 gi|55376981|ref|YP_134831.1| - 0.015 15.2 1.3 2.1 8.3 0.5 2.2 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component Cupredoxin_1 PF13473.6 gi|55376981|ref|YP_134831.1| - 0.028 14.5 0.0 0.06 13.5 0.0 1.7 1 1 0 1 1 1 0 Cupredoxin-like domain Rft-1 PF04506.13 gi|55376981|ref|YP_134831.1| - 0.093 11.5 0.6 0.12 11.1 0.6 1.1 1 0 0 1 1 1 0 Rft protein DUF4538 PF15061.6 gi|55376981|ref|YP_134831.1| - 0.13 12.0 0.9 8.6 6.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) UbiA PF01040.18 gi|55376982|ref|YP_134832.1| - 1.6e-58 198.0 21.7 1.6e-58 198.0 21.7 3.1 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|55376982|ref|YP_134832.1| - 1.1e-08 34.6 14.6 1.1e-05 24.7 1.5 4.0 3 2 2 5 5 5 2 Cytochrome oxidase assembly protein Phage_holin_2_4 PF16082.5 gi|55376982|ref|YP_134832.1| - 9.1 6.1 14.8 0.12 12.1 1.7 3.8 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like Rdx PF10262.9 gi|55376984|ref|YP_134834.1| - 1.6e-16 60.2 0.0 1.8e-16 60.1 0.0 1.0 1 0 0 1 1 1 1 Rdx family DZR PF12773.7 gi|55376985|ref|YP_134835.1| - 0.0032 17.4 0.6 0.0034 17.4 0.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|55376985|ref|YP_134835.1| - 0.0089 15.9 3.1 0.6 10.0 0.1 2.1 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS ABC_tran PF00005.27 gi|55376986|ref|YP_134836.1| - 4.8e-30 104.9 0.0 7.1e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55376986|ref|YP_134836.1| - 1.8e-15 57.6 0.1 9.1e-09 35.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|55376986|ref|YP_134836.1| - 1.5e-06 28.1 0.6 3.8e-06 26.7 0.0 1.9 2 1 1 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|55376986|ref|YP_134836.1| - 8.3e-05 22.4 0.0 0.13 12.0 0.0 2.4 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_23 PF13476.6 gi|55376986|ref|YP_134836.1| - 0.00025 21.6 0.0 0.00036 21.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|55376986|ref|YP_134836.1| - 0.00033 20.5 0.0 0.22 11.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|55376986|ref|YP_134836.1| - 0.00035 20.8 0.0 0.00075 19.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|55376986|ref|YP_134836.1| - 0.00038 20.0 0.0 0.13 11.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|55376986|ref|YP_134836.1| - 0.00077 19.7 0.1 0.0012 19.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|55376986|ref|YP_134836.1| - 0.0012 19.2 1.5 0.0054 17.1 1.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|55376986|ref|YP_134836.1| - 0.0017 18.4 0.2 0.0033 17.4 0.2 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|55376986|ref|YP_134836.1| - 0.003 17.5 0.1 0.0055 16.6 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|55376986|ref|YP_134836.1| - 0.0031 17.2 0.3 0.0062 16.3 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|55376986|ref|YP_134836.1| - 0.0064 16.6 0.3 0.014 15.4 0.3 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.29 gi|55376986|ref|YP_134836.1| - 0.013 15.9 0.1 0.044 14.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|55376986|ref|YP_134836.1| - 0.013 15.6 0.1 0.038 14.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain OB_MalK PF17912.1 gi|55376986|ref|YP_134836.1| - 0.018 15.9 0.0 0.063 14.1 0.0 2.1 1 1 0 1 1 1 0 MalK OB fold domain Lum_binding PF00677.17 gi|55376986|ref|YP_134836.1| - 0.032 14.2 0.2 0.067 13.2 0.2 1.6 1 0 0 1 1 1 0 Lumazine binding domain AAA_5 PF07728.14 gi|55376986|ref|YP_134836.1| - 0.039 14.0 0.0 0.28 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|55376986|ref|YP_134836.1| - 0.043 13.4 0.4 0.093 12.3 0.4 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|55376986|ref|YP_134836.1| - 0.071 13.0 0.8 0.22 11.4 0.1 2.1 2 1 0 2 2 2 0 NACHT domain AAA_27 PF13514.6 gi|55376986|ref|YP_134836.1| - 0.09 12.4 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|55376986|ref|YP_134836.1| - 0.1 13.2 0.1 0.83 10.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|55376986|ref|YP_134836.1| - 0.1 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.22 gi|55376986|ref|YP_134836.1| - 0.1 12.2 0.5 0.19 11.3 0.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|55376986|ref|YP_134836.1| - 0.13 12.6 0.0 1.4 9.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|55376986|ref|YP_134836.1| - 0.14 11.8 0.1 0.44 10.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|55376986|ref|YP_134836.1| - 0.16 11.6 2.0 0.4 10.2 2.0 1.9 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|55376986|ref|YP_134836.1| - 0.16 11.5 0.1 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B ATP_bind_1 PF03029.17 gi|55376986|ref|YP_134836.1| - 0.25 11.1 0.1 0.46 10.2 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_PrkA PF08298.11 gi|55376986|ref|YP_134836.1| - 0.26 10.1 0.0 0.39 9.6 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain Rad17 PF03215.15 gi|55376986|ref|YP_134836.1| - 0.28 11.1 0.0 0.44 10.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ABC2_membrane PF01061.24 gi|55376987|ref|YP_134837.1| - 1.1e-22 80.5 11.3 1.6e-22 80.0 11.3 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|55376987|ref|YP_134837.1| - 3.2e-12 46.2 8.7 1.1e-11 44.5 1.9 2.0 2 0 0 2 2 2 2 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|55376987|ref|YP_134837.1| - 0.011 14.8 0.3 0.015 14.4 0.3 1.1 1 0 0 1 1 1 0 Membrane protein of 12 TMs CDP-OH_P_transf PF01066.21 gi|55376987|ref|YP_134837.1| - 1.5 9.6 4.2 1.8 9.4 2.4 2.1 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase DSPc PF00782.20 gi|55376988|ref|YP_134838.1| - 5.6e-09 35.9 0.0 7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|55376988|ref|YP_134838.1| - 0.00065 19.3 0.0 0.00083 19.0 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|55376988|ref|YP_134838.1| - 0.022 14.9 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Inositol hexakisphosphate CDKN3 PF05706.12 gi|55376988|ref|YP_134838.1| - 0.048 13.3 0.0 0.19 11.4 0.0 1.8 1 1 1 2 2 2 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|55376988|ref|YP_134838.1| - 0.063 13.2 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 Tyrosine phosphatase family UPF0052 PF01933.18 gi|55376989|ref|YP_134839.1| - 4.1e-44 151.0 0.0 5.2e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|55376990|ref|YP_134840.1| - 1.5e-09 37.4 0.4 7.8e-09 35.0 0.4 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|55376990|ref|YP_134840.1| - 0.01 15.3 0.0 0.022 14.2 0.0 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein DUF1633 PF07794.11 gi|55376990|ref|YP_134840.1| - 0.042 12.1 3.2 0.046 11.9 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) CitG PF01874.16 gi|55376991|ref|YP_134841.1| - 2.2e-49 168.6 0.8 2.4e-49 168.5 0.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|55376992|ref|YP_134842.1| - 5.8e-47 159.7 0.0 6.6e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.18 gi|55376993|ref|YP_134843.1| - 2.5e-14 53.2 0.0 3e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 ParA PF10609.9 gi|55376994|ref|YP_134844.1| - 2.7e-99 331.6 0.0 3.4e-99 331.3 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|55376994|ref|YP_134844.1| - 2.3e-16 60.0 0.0 1e-15 57.9 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|55376994|ref|YP_134844.1| - 2.5e-14 53.2 1.3 4.6e-14 52.3 0.4 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|55376994|ref|YP_134844.1| - 3e-10 40.3 0.5 8.6e-09 35.6 0.5 2.3 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|55376994|ref|YP_134844.1| - 4.1e-07 29.5 0.0 6.8e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|55376994|ref|YP_134844.1| - 1.3e-05 24.8 0.0 0.0075 15.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|55376994|ref|YP_134844.1| - 0.0002 20.7 0.0 0.00031 20.1 0.0 1.2 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|55376994|ref|YP_134844.1| - 0.0016 17.7 5.0 0.0016 17.7 1.7 2.2 1 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|55376994|ref|YP_134844.1| - 0.0083 16.0 0.0 4.6 7.0 0.1 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|55376994|ref|YP_134844.1| - 0.018 14.6 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|55376994|ref|YP_134844.1| - 0.038 12.2 0.0 0.054 11.7 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase CLP1_P PF16575.5 gi|55376994|ref|YP_134844.1| - 0.078 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|55376994|ref|YP_134844.1| - 0.11 11.9 1.0 0.3 10.5 0.2 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ DUF1610 PF07754.11 gi|55376994|ref|YP_134844.1| - 0.14 12.2 0.2 0.32 11.0 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) AAA_18 PF13238.6 gi|55376994|ref|YP_134844.1| - 0.16 12.5 0.0 0.27 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|55376994|ref|YP_134844.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Ribosomal_S13 PF00416.22 gi|55376996|ref|YP_134846.1| - 8.5e-50 168.4 6.6 1.1e-49 168.1 6.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|55376996|ref|YP_134846.1| - 0.0081 15.0 0.0 0.0081 15.0 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|55376997|ref|YP_134847.1| - 4.5e-13 48.7 0.5 2.3e-12 46.4 0.0 2.1 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|55376997|ref|YP_134847.1| - 0.0017 19.2 0.7 0.008 17.1 0.2 2.2 2 1 1 3 3 3 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|55376998|ref|YP_134848.1| - 5.6e-50 168.4 1.9 6.8e-50 168.1 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|55376998|ref|YP_134848.1| - 0.002 18.5 0.1 0.0031 17.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|55376999|ref|YP_134849.1| - 2.8e-19 69.5 0.0 1.2e-18 67.5 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|55376999|ref|YP_134849.1| - 3.1e-14 52.1 0.0 4.1e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Thioredoxin_14 PF18402.1 gi|55376999|ref|YP_134849.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Ribosomal_L18 PF17135.4 gi|55377000|ref|YP_134850.1| - 9.6e-06 25.1 0.0 9.8e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|55377000|ref|YP_134850.1| - 3.9e-05 24.3 0.2 0.00015 22.5 0.2 1.8 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|55377001|ref|YP_134851.1| - 3.1e-08 33.9 0.6 7.1e-06 26.3 0.6 2.5 1 1 0 1 1 1 1 Ribosomal protein L13 SAM_adeno_trans PF01887.16 gi|55377001|ref|YP_134851.1| - 0.14 11.6 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase Ribosomal_S9 PF00380.19 gi|55377002|ref|YP_134852.1| - 4.5e-31 107.9 0.0 5e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|55377003|ref|YP_134853.1| - 6.3e-28 96.9 0.3 7e-28 96.7 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|55377004|ref|YP_134854.1| - 6.9e-11 41.9 0.0 7.5e-11 41.8 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|55377005|ref|YP_134855.1| - 1.4e-73 247.7 1.7 2e-73 247.2 1.7 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|55377005|ref|YP_134855.1| - 2.3e-33 115.1 0.2 8.2e-33 113.4 0.2 2.0 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|55377005|ref|YP_134855.1| - 1.7e-09 37.6 0.5 3e-09 36.8 0.0 1.6 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|55377005|ref|YP_134855.1| - 0.00013 21.3 0.3 0.00021 20.5 0.3 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus IDEAL PF08858.10 gi|55377005|ref|YP_134855.1| - 0.14 11.9 0.7 1.3 8.9 0.2 2.3 2 0 0 2 2 2 0 IDEAL domain Ribosomal_S2 PF00318.20 gi|55377006|ref|YP_134856.1| - 2.2e-23 82.6 0.2 8.2e-14 51.3 0.7 2.1 2 0 0 2 2 2 2 Ribosomal protein S2 SDA1 PF05285.12 gi|55377006|ref|YP_134856.1| - 2.3 7.6 9.7 2.9 7.2 9.7 1.1 1 0 0 1 1 1 0 SDA1 DUF5518 PF17647.1 gi|55377007|ref|YP_134857.1| - 1.4e-15 57.4 31.2 1.7e-15 57.2 31.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF21 PF01595.20 gi|55377007|ref|YP_134857.1| - 0.014 15.1 2.5 0.019 14.7 2.5 1.1 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain DUF5518 PF17647.1 gi|55377008|ref|YP_134858.1| - 5.6e-11 42.6 26.2 6.2e-11 42.5 26.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) p450 PF00067.22 gi|55377009|ref|YP_134859.1| - 3.6e-99 332.6 0.0 4.2e-99 332.4 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 PAS_9 PF13426.7 gi|55377011|ref|YP_134861.1| - 1.7e-40 137.5 1.8 3.7e-22 78.6 0.0 4.3 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|55377011|ref|YP_134861.1| - 1.4e-36 125.1 4.0 2.3e-12 47.1 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|55377011|ref|YP_134861.1| - 1.9e-26 92.3 0.3 1e-10 41.6 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|55377011|ref|YP_134861.1| - 2e-18 65.9 3.5 3.8e-07 30.0 0.1 4.2 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|55377011|ref|YP_134861.1| - 4.9e-18 65.7 0.0 1.2e-17 64.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|55377011|ref|YP_134861.1| - 8.6e-16 58.1 0.0 2e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|55377011|ref|YP_134861.1| - 6.3e-15 55.0 4.2 6.4e-15 54.9 1.3 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|55377011|ref|YP_134861.1| - 8.9e-15 54.8 0.2 1.2e-11 44.7 0.0 3.4 3 0 0 3 3 3 1 PAS fold PAS_7 PF12860.7 gi|55377011|ref|YP_134861.1| - 7.6e-06 26.1 1.6 0.054 13.7 0.1 4.6 2 2 2 4 4 4 2 PAS fold PAS_10 PF13596.6 gi|55377011|ref|YP_134861.1| - 0.016 15.8 0.0 4.9 7.8 0.0 2.7 2 0 0 2 2 2 0 PAS domain UME PF08064.13 gi|55377011|ref|YP_134861.1| - 0.037 13.9 0.0 0.085 12.8 0.0 1.6 1 0 0 1 1 1 0 UME (NUC010) domain HATPase_c_2 PF13581.6 gi|55377011|ref|YP_134861.1| - 0.076 13.0 0.7 4.9 7.1 0.1 2.9 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|55377011|ref|YP_134861.1| - 0.18 11.5 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain GHMP_kinases_N PF00288.26 gi|55377012|ref|YP_134862.1| - 4.1e-14 52.6 2.1 4.1e-14 52.6 2.1 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|55377012|ref|YP_134862.1| - 2.9e-13 50.0 0.2 2.9e-13 50.0 0.2 2.6 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|55377012|ref|YP_134862.1| - 3.6e-05 23.2 0.1 0.00021 20.8 0.1 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|55377013|ref|YP_134863.1| - 4.3e-40 137.8 5.2 5.3e-40 137.5 5.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3561 PF12084.8 gi|55377013|ref|YP_134863.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Lactamase_B_2 PF12706.7 gi|55377015|ref|YP_134865.1| - 2.3e-09 37.1 0.8 9.6e-08 31.8 0.1 2.7 2 1 1 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|55377015|ref|YP_134865.1| - 1.1e-06 28.8 2.8 1.1e-06 28.8 2.8 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|55377015|ref|YP_134865.1| - 6.4e-05 22.8 0.5 0.0025 17.7 0.1 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|55377016|ref|YP_134866.1| - 3.4e-64 216.4 0.5 4.2e-64 216.1 0.5 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase VCBS PF13517.6 gi|55377017|ref|YP_134867.1| - 6e-05 23.6 5.6 0.0097 16.5 0.1 3.9 4 1 1 5 5 5 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Cuticle_1 PF08140.11 gi|55377017|ref|YP_134867.1| - 0.052 13.6 0.1 0.22 11.6 0.1 2.1 1 0 0 1 1 1 0 Crustacean cuticle protein repeat ArsA_ATPase PF02374.15 gi|55377018|ref|YP_134868.1| - 1.5e-49 168.9 0.0 1.6e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|55377018|ref|YP_134868.1| - 0.051 13.0 0.0 0.09 12.2 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Ufm1 PF03671.14 gi|55377018|ref|YP_134868.1| - 0.17 12.0 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin fold modifier 1 protein tRNA-synt_1c PF00749.21 gi|55377019|ref|YP_134869.1| - 5.5e-60 202.9 0.0 6.8e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|55377019|ref|YP_134869.1| - 1.7e-14 54.1 0.0 1.1e-13 51.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain EGF PF00008.27 gi|55377019|ref|YP_134869.1| - 0.14 12.5 0.2 0.32 11.3 0.2 1.6 1 0 0 1 1 1 0 EGF-like domain PAS PF00989.25 gi|55377020|ref|YP_134870.1| - 9.7e-32 109.3 0.2 1.9e-15 56.8 0.0 5.0 3 2 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|55377020|ref|YP_134870.1| - 3e-30 104.7 10.6 1e-14 54.7 0.5 5.3 4 2 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|55377020|ref|YP_134870.1| - 2.5e-26 91.9 0.0 1.1e-09 38.5 0.0 4.1 3 1 0 3 3 3 3 PAS domain HisKA_7TM PF16927.5 gi|55377020|ref|YP_134870.1| - 5.1e-24 85.5 18.8 6.7e-24 85.1 18.8 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_8 PF13188.7 gi|55377020|ref|YP_134870.1| - 1.3e-20 73.0 0.1 1.2e-06 28.4 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|55377020|ref|YP_134870.1| - 8.9e-16 58.4 0.0 2e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|55377020|ref|YP_134870.1| - 7.9e-11 42.1 0.1 0.0011 19.2 0.0 5.2 4 2 0 4 4 4 3 PAS fold HisKA PF00512.25 gi|55377020|ref|YP_134870.1| - 9.9e-10 38.3 0.8 3.2e-09 36.7 0.8 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|55377020|ref|YP_134870.1| - 3e-06 27.8 0.0 7.7e-05 23.2 0.0 2.8 3 0 0 3 3 3 1 PAS domain PAS_3 PF08447.12 gi|55377020|ref|YP_134870.1| - 0.00015 22.0 0.0 0.00045 20.4 0.0 1.9 1 0 0 1 1 1 1 PAS fold MLTR_LBD PF17765.1 gi|55377020|ref|YP_134870.1| - 0.0009 19.4 3.4 3.2 7.9 0.2 4.2 4 0 0 4 4 4 1 MmyB-like transcription regulator ligand binding domain HATPase_c_2 PF13581.6 gi|55377020|ref|YP_134870.1| - 0.00094 19.1 0.0 0.0023 17.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain IclR PF01614.18 gi|55377020|ref|YP_134870.1| - 0.028 14.2 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial transcriptional regulator HSP20 PF00011.21 gi|55377021|ref|YP_134871.1| - 4.8e-16 58.8 0.0 8.3e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|55377021|ref|YP_134871.1| - 1.4e-10 40.6 0.0 2.5e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA Abhydrolase_3 PF07859.13 gi|55377022|ref|YP_134872.1| - 2.7e-19 69.9 0.7 3.9e-19 69.3 0.7 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|55377022|ref|YP_134872.1| - 7.9e-15 54.9 0.0 3.3e-14 52.9 0.0 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.28 gi|55377022|ref|YP_134872.1| - 1.8e-10 40.3 0.0 4.8e-10 38.9 0.0 1.6 1 1 0 1 1 1 1 Carboxylesterase family Hydrolase_4 PF12146.8 gi|55377022|ref|YP_134872.1| - 0.00012 21.4 0.0 0.0099 15.2 0.0 2.5 3 0 0 3 3 3 1 Serine aminopeptidase, S33 FSH1 PF03959.13 gi|55377022|ref|YP_134872.1| - 0.008 15.9 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.10 gi|55377022|ref|YP_134872.1| - 0.024 14.7 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Fer4_7 PF12838.7 gi|55377023|ref|YP_134873.1| - 3.3e-13 50.0 20.7 1.2e-07 32.2 7.2 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|55377023|ref|YP_134873.1| - 2.6e-12 46.0 14.5 1e-07 31.5 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|55377023|ref|YP_134873.1| - 3e-08 33.7 4.8 6.2e-08 32.7 5.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55377023|ref|YP_134873.1| - 2.4e-07 30.7 18.6 2.7e-05 24.2 8.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|55377023|ref|YP_134873.1| - 6.2e-07 29.2 14.7 1.6e-05 24.7 5.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|55377023|ref|YP_134873.1| - 1.1e-06 28.7 11.1 4.1e-06 26.8 11.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|55377023|ref|YP_134873.1| - 3.8e-06 27.7 5.4 0.00029 21.7 1.0 2.4 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|55377023|ref|YP_134873.1| - 8.1e-06 26.3 1.2 0.029 14.9 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55377023|ref|YP_134873.1| - 3.7e-05 23.6 10.0 0.002 18.1 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|55377023|ref|YP_134873.1| - 0.00011 22.6 6.2 0.0016 18.8 6.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|55377023|ref|YP_134873.1| - 0.0011 19.5 15.6 0.013 16.0 15.6 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|55377023|ref|YP_134873.1| - 0.0012 19.2 2.4 0.0012 19.2 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain ETF_QO PF05187.13 gi|55377023|ref|YP_134873.1| - 0.0024 18.0 0.3 0.0024 18.0 0.3 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|55377023|ref|YP_134873.1| - 0.0024 18.7 4.1 0.0024 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|55377023|ref|YP_134873.1| - 0.0037 17.4 3.8 0.0037 17.4 3.8 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain ETF PF01012.21 gi|55377024|ref|YP_134874.1| - 1.6e-39 135.7 0.0 2.1e-39 135.3 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|55377025|ref|YP_134875.1| - 9.4e-25 86.5 0.2 2.6e-24 85.0 0.1 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|55377025|ref|YP_134875.1| - 1e-14 54.8 0.0 2.5e-14 53.5 0.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein domain FAD_binding_3 PF01494.19 gi|55377026|ref|YP_134876.1| - 6.2e-11 42.1 1.6 1.5e-10 40.9 1.6 1.6 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|55377026|ref|YP_134876.1| - 3.7e-08 33.1 0.7 5.5e-08 32.6 0.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|55377026|ref|YP_134876.1| - 7.5e-07 29.0 6.8 0.00086 19.0 2.4 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55377026|ref|YP_134876.1| - 4.3e-06 26.2 5.8 0.00055 19.3 1.2 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|55377026|ref|YP_134876.1| - 3.6e-05 23.9 0.5 0.00012 22.2 0.5 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|55377026|ref|YP_134876.1| - 0.00016 21.0 0.5 0.00029 20.1 0.5 1.4 1 0 0 1 1 1 1 Thi4 family ETF_QO PF05187.13 gi|55377026|ref|YP_134876.1| - 0.0015 18.7 0.2 0.0026 17.9 0.2 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S HI0933_like PF03486.14 gi|55377026|ref|YP_134876.1| - 0.0035 16.1 3.1 0.0066 15.2 1.3 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|55377026|ref|YP_134876.1| - 0.0096 15.0 12.0 0.013 14.6 4.4 2.6 2 1 0 3 3 3 2 FAD binding domain GIDA PF01134.22 gi|55377026|ref|YP_134876.1| - 0.018 14.2 4.5 0.12 11.4 3.0 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|55377026|ref|YP_134876.1| - 0.022 14.0 0.7 0.038 13.2 0.7 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|55377026|ref|YP_134876.1| - 0.22 10.8 1.2 0.36 10.2 0.1 1.8 2 0 0 2 2 2 0 ThiF family Fer4_2 PF12797.7 gi|55377026|ref|YP_134876.1| - 2.9 8.2 5.1 0.38 11.0 0.4 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Acetyltransf_1 PF00583.25 gi|55377028|ref|YP_134878.1| - 3e-14 53.2 0.1 7.4e-14 52.0 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|55377028|ref|YP_134878.1| - 2.1e-10 40.9 0.0 3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55377028|ref|YP_134878.1| - 8.2e-08 32.6 0.0 1.6e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|55377028|ref|YP_134878.1| - 2.6e-05 24.2 0.0 6.3e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55377028|ref|YP_134878.1| - 0.00013 22.7 0.0 0.00021 22.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain ETC_C1_NDUFA4 PF04800.12 gi|55377028|ref|YP_134878.1| - 0.2 12.0 0.1 0.47 10.7 0.1 1.6 1 0 0 1 1 1 0 ETC complex I subunit conserved region Bac_luciferase PF00296.20 gi|55377029|ref|YP_134879.1| - 4.5e-66 223.4 10.1 5.9e-66 223.0 10.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase AMP-binding PF00501.28 gi|55377030|ref|YP_134880.1| - 2e-97 326.5 0.1 2.5e-97 326.2 0.1 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55377030|ref|YP_134880.1| - 1.8e-16 60.8 0.0 4.9e-16 59.5 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF456 PF04306.13 gi|55377032|ref|YP_134882.1| - 7.9e-25 87.8 25.7 7.9e-25 87.8 25.7 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF456) DUF5056 PF16479.5 gi|55377032|ref|YP_134882.1| - 0.037 14.3 0.9 0.1 12.9 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5056) Helicase_RecD PF05127.14 gi|55377034|ref|YP_134883.1| - 7.2e-48 162.8 0.0 1.9e-47 161.4 0.0 1.7 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|55377034|ref|YP_134883.1| - 1.7e-41 142.1 0.1 3.8e-25 88.6 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|55377034|ref|YP_134883.1| - 2.4e-27 94.7 0.0 8.2e-27 93.0 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|55377034|ref|YP_134883.1| - 7.7e-06 25.7 1.1 2e-05 24.4 0.1 2.3 3 0 0 3 3 3 1 AAA domain Acetyltransf_10 PF13673.7 gi|55377034|ref|YP_134883.1| - 0.005 16.8 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55377034|ref|YP_134883.1| - 0.023 15.1 0.0 0.063 13.7 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|55377034|ref|YP_134883.1| - 2.9 8.0 7.3 5.7 7.1 0.2 3.5 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain NMO PF03060.15 gi|55377033|ref|YP_134884.1| - 1.2e-56 192.5 4.5 6.5e-42 144.1 0.3 2.0 1 1 1 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|55377033|ref|YP_134884.1| - 1.7e-06 27.3 7.1 1.5e-05 24.2 7.1 2.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|55377033|ref|YP_134884.1| - 0.0089 15.1 8.1 0.017 14.2 8.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Ribosomal_L7Ae PF01248.26 gi|55377035|ref|YP_134885.1| - 2.2e-25 88.2 0.0 2.6e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|55377035|ref|YP_134885.1| - 0.00014 21.7 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.12 gi|55377035|ref|YP_134885.1| - 0.0066 16.7 2.5 1.6 9.1 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1269) eRF1_3 PF03465.15 gi|55377035|ref|YP_134885.1| - 0.054 14.0 0.2 0.07 13.6 0.2 1.2 1 0 0 1 1 1 0 eRF1 domain 3 Ribosomal_S28e PF01200.18 gi|297616206|ref|YP_003710344.1| - 3.2e-29 100.7 2.2 3.5e-29 100.6 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|55377036|ref|YP_134886.1| - 1.5e-22 79.6 0.0 1.9e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|55377036|ref|YP_134886.1| - 1.1e-05 25.2 1.4 1.4e-05 24.9 1.4 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|55377036|ref|YP_134886.1| - 0.014 15.5 0.6 0.023 14.8 0.6 1.3 1 0 0 1 1 1 0 YHS domain NOA36 PF06524.12 gi|55377036|ref|YP_134886.1| - 0.13 11.6 15.7 0.14 11.5 15.7 1.1 1 0 0 1 1 1 0 NOA36 protein VATC PF18716.1 gi|55377036|ref|YP_134886.1| - 1 9.3 3.9 4.1 7.3 3.9 1.8 1 1 0 1 1 1 0 Vms1-associating treble clef domain Nop14 PF04147.12 gi|55377036|ref|YP_134886.1| - 9.6 4.3 19.1 9.8 4.2 19.1 1.0 1 0 0 1 1 1 0 Nop14-like family NDK PF00334.19 gi|55377037|ref|YP_134887.1| - 1.6e-56 190.0 0.0 1.8e-56 189.8 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GST_N_3 PF13417.6 gi|55377038|ref|YP_134888.1| - 3.1e-15 56.3 0.0 3.8e-15 56.1 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|55377038|ref|YP_134888.1| - 1e-14 54.5 0.0 1.2e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|55377038|ref|YP_134888.1| - 4e-11 43.1 0.0 4.5e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|55377038|ref|YP_134888.1| - 0.00013 22.2 0.0 0.00015 22.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|55377038|ref|YP_134888.1| - 0.0027 18.1 0.1 0.003 17.9 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NTP_transf_3 PF12804.7 gi|55377038|ref|YP_134888.1| - 0.037 14.4 0.0 0.042 14.2 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain Thioredoxin_2 PF13098.6 gi|55377038|ref|YP_134888.1| - 0.1 13.0 0.0 0.14 12.7 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain SelR PF01641.18 gi|55377040|ref|YP_134890.1| - 2.8e-51 172.7 0.0 3.2e-51 172.5 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|55377040|ref|YP_134890.1| - 0.00039 20.6 0.0 0.00075 19.7 0.0 1.5 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly TF_Zn_Ribbon PF08271.12 gi|55377040|ref|YP_134890.1| - 0.041 13.4 10.2 0.88 9.1 0.2 3.3 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|55377040|ref|YP_134890.1| - 0.073 12.8 0.2 0.94 9.2 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein ADD_ATRX PF17981.1 gi|55377040|ref|YP_134890.1| - 0.1 12.5 0.1 14 5.6 0.0 2.2 2 0 0 2 2 2 0 Cysteine Rich ADD domain HECT_2 PF09814.9 gi|55377040|ref|YP_134890.1| - 0.1 11.4 0.2 7.4 5.3 0.0 2.0 1 1 0 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding RIG-I_C-RD PF11648.8 gi|55377040|ref|YP_134890.1| - 0.17 12.1 0.1 0.72 10.1 0.2 1.8 1 1 1 2 2 2 0 C-terminal domain of RIG-I PhnA_Zn_Ribbon PF08274.12 gi|55377040|ref|YP_134890.1| - 2.1 8.4 5.0 7.9 6.5 0.0 2.9 3 0 0 3 3 3 0 PhnA Zinc-Ribbon GMC_oxred_C PF05199.13 gi|55377041|ref|YP_134891.1| - 2.3e-22 80.1 0.6 9.5e-22 78.1 0.6 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|55377041|ref|YP_134891.1| - 6e-14 52.1 0.0 8.6e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.24 gi|55377041|ref|YP_134891.1| - 6.5e-14 52.3 0.9 7.4e-13 48.8 0.5 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|55377041|ref|YP_134891.1| - 2.9e-09 36.6 0.9 3.6e-06 26.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|55377041|ref|YP_134891.1| - 1.1e-08 34.6 0.0 2.7e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|55377041|ref|YP_134891.1| - 6.7e-08 32.6 0.1 2.3e-07 31.0 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|55377041|ref|YP_134891.1| - 1.8e-06 27.0 0.1 2e-05 23.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|55377041|ref|YP_134891.1| - 2.1e-06 27.2 0.0 0.00012 21.4 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|55377041|ref|YP_134891.1| - 0.00015 21.1 0.0 0.00031 20.1 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|55377041|ref|YP_134891.1| - 0.00016 21.1 0.6 0.00053 19.4 0.4 1.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|55377041|ref|YP_134891.1| - 0.00095 18.5 0.0 0.0022 17.3 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|55377041|ref|YP_134891.1| - 0.0052 15.9 0.0 0.0074 15.4 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|55377041|ref|YP_134891.1| - 0.0067 15.5 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Rossmann-like PF10727.9 gi|55377041|ref|YP_134891.1| - 0.0093 15.8 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Rossmann-like domain ApbA PF02558.16 gi|55377041|ref|YP_134891.1| - 0.017 14.7 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|55377041|ref|YP_134891.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|55377041|ref|YP_134891.1| - 0.029 14.9 0.0 0.13 12.8 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|55377041|ref|YP_134891.1| - 0.053 13.4 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|55377041|ref|YP_134891.1| - 0.058 12.7 0.7 0.15 11.3 0.1 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|55377041|ref|YP_134891.1| - 0.17 12.4 0.0 0.38 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|55377041|ref|YP_134891.1| - 0.17 10.7 0.3 0.61 8.9 0.1 1.8 2 0 0 2 2 2 0 Tryptophan halogenase TAT_signal PF10518.9 gi|55377042|ref|YP_134892.1| - 0.00014 21.6 0.5 0.0053 16.6 0.6 2.6 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Gluconate_2-dh3 PF13618.6 gi|55377042|ref|YP_134892.1| - 0.00023 21.4 0.0 0.00046 20.4 0.0 1.5 1 1 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 DprA_WH PF17782.1 gi|55377042|ref|YP_134892.1| - 0.11 12.6 0.1 3.7 7.7 0.0 3.0 3 1 0 3 3 3 0 DprA winged helix domain DuoxA PF10204.9 gi|55377043|ref|YP_134893.1| - 0.082 11.9 3.4 0.34 9.9 0.3 2.4 2 0 0 2 2 2 0 Dual oxidase maturation factor AlaDh_PNT_C PF01262.21 gi|55377043|ref|YP_134893.1| - 0.19 11.0 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Acetyltransf_1 PF00583.25 gi|55377044|ref|YP_134894.1| - 2.2e-18 66.6 0.1 2.7e-18 66.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55377044|ref|YP_134894.1| - 8.9e-12 45.3 0.0 1.1e-11 45.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|55377044|ref|YP_134894.1| - 8.9e-12 45.1 0.1 1.1e-11 44.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377044|ref|YP_134894.1| - 7.3e-06 25.9 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|55377044|ref|YP_134894.1| - 9.2e-06 25.8 0.0 1.2e-05 25.3 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55377044|ref|YP_134894.1| - 0.00014 22.1 0.0 0.00017 21.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55377044|ref|YP_134894.1| - 0.00015 21.8 0.0 0.00028 21.0 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|55377044|ref|YP_134894.1| - 0.00063 19.5 0.4 0.013 15.3 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|55377044|ref|YP_134894.1| - 0.00067 19.6 0.0 0.0019 18.1 0.0 1.7 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase CBS PF00571.28 gi|55377045|ref|YP_134895.1| - 3.6e-16 59.3 1.2 7.9e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 CBS domain GCH_III PF05165.12 gi|55377046|ref|YP_134896.1| - 1.3e-88 296.5 0.9 1.7e-88 296.1 0.9 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|55377046|ref|YP_134896.1| - 8.3e-07 29.3 0.0 0.0015 18.8 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|55377046|ref|YP_134896.1| - 0.0017 18.6 0.1 0.029 14.7 0.0 2.1 2 0 0 2 2 2 1 minimal CRISPR polymerase domain CheD PF03975.13 gi|55377046|ref|YP_134896.1| - 0.14 12.3 0.0 0.75 9.9 0.0 2.0 2 0 0 2 2 2 0 CheD chemotactic sensory transduction HTH_20 PF12840.7 gi|55377047|ref|YP_134897.1| - 0.022 14.8 0.6 0.03 14.4 0.6 1.3 1 1 0 1 1 1 0 Helix-turn-helix domain CARDB PF07705.11 gi|55377049|ref|YP_134899.1| - 5.6e-08 33.0 11.2 4.5e-06 26.8 1.2 2.7 2 0 0 2 2 2 2 CARDB DUF3416 PF11896.8 gi|55377049|ref|YP_134899.1| - 0.016 15.5 1.2 0.41 10.9 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) bMG6 PF17962.1 gi|55377049|ref|YP_134899.1| - 0.035 14.3 2.2 0.76 9.9 0.2 2.7 2 0 0 2 2 2 0 Bacterial macroglobulin domain 6 CelD_N PF02927.14 gi|55377049|ref|YP_134899.1| - 0.66 10.9 11.9 0.4 11.6 0.3 4.0 3 2 0 3 3 3 0 Cellulase N-terminal ig-like domain DUF3995 PF13160.6 gi|55377049|ref|YP_134899.1| - 0.86 10.0 3.9 2.3 8.6 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3995) DUF2064 PF09837.9 gi|55377050|ref|YP_134900.1| - 0.0014 18.4 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Zn-ribbon_8 PF09723.10 gi|55377051|ref|YP_134901.1| - 0.014 15.5 2.3 0.033 14.3 2.3 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Phage_TAC_2 PF06894.11 gi|55377051|ref|YP_134901.1| - 0.018 14.9 0.8 0.029 14.2 0.5 1.4 1 1 0 1 1 1 0 Bacteriophage lambda tail assembly chaperone, TAC, protein G Desulfoferrod_N PF06397.12 gi|55377051|ref|YP_134901.1| - 0.054 13.1 0.2 0.081 12.6 0.2 1.2 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain HemY_N PF07219.13 gi|55377051|ref|YP_134901.1| - 0.067 13.4 0.7 0.067 13.4 0.7 2.4 1 1 0 2 2 2 0 HemY protein N-terminus Ribosomal_S27e PF01667.17 gi|55377051|ref|YP_134901.1| - 0.13 12.0 0.1 0.22 11.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 TPR_14 PF13428.6 gi|55377051|ref|YP_134901.1| - 1.5 9.9 5.6 37 5.5 0.0 3.0 2 1 1 3 3 3 0 Tetratricopeptide repeat UDG PF03167.19 gi|55377052|ref|YP_134902.1| - 1.2e-19 70.8 0.0 1.4e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NqrM PF04400.13 gi|55377052|ref|YP_134902.1| - 0.013 15.2 0.5 0.031 14.0 0.5 1.6 1 0 0 1 1 1 0 (Na+)-NQR maturation NqrM Chorismate_synt PF01264.21 gi|55377053|ref|YP_134903.1| - 5.6e-118 393.4 0.0 6.5e-118 393.2 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase ORF_12_N PF18042.1 gi|55377054|ref|YP_134904.1| - 0.11 13.0 0.0 0.14 12.6 0.0 1.2 1 0 0 1 1 1 0 ORF 12 gene product N-terminal EPSP_synthase PF00275.20 gi|55377055|ref|YP_134905.1| - 2.6e-105 352.5 0.1 3.1e-105 352.3 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.11 gi|55377055|ref|YP_134905.1| - 0.063 13.8 0.0 1.2 9.6 0.0 2.7 3 0 0 3 3 3 0 Copper amine oxidase N-terminal domain adh_short PF00106.25 gi|55377056|ref|YP_134906.1| - 4.2e-37 127.5 0.4 4.9e-37 127.3 0.4 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55377056|ref|YP_134906.1| - 2.5e-33 115.6 1.7 3e-33 115.3 1.7 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55377056|ref|YP_134906.1| - 2.8e-11 43.7 0.3 3.5e-11 43.3 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55377056|ref|YP_134906.1| - 0.00035 20.1 0.7 0.0066 15.9 0.7 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Fox-1_C PF12414.8 gi|55377056|ref|YP_134906.1| - 0.02 15.2 1.8 0.02 15.2 1.8 2.3 1 1 1 2 2 2 0 Calcitonin gene-related peptide regulator C terminal 3HCDH_N PF02737.18 gi|55377056|ref|YP_134906.1| - 0.044 13.7 0.4 0.063 13.2 0.4 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Zip PF02535.22 gi|55377057|ref|YP_134907.1| - 9.2e-08 31.7 15.9 1.1e-07 31.4 8.7 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter PAS_9 PF13426.7 gi|55377058|ref|YP_134908.1| - 4.8e-19 68.5 0.1 1.5e-18 67.0 0.1 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|55377058|ref|YP_134908.1| - 3.3e-17 62.5 0.1 7.9e-17 61.3 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|55377058|ref|YP_134908.1| - 5.2e-13 49.2 0.1 3.7e-12 46.4 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|55377058|ref|YP_134908.1| - 1.7e-11 44.6 0.0 4.3e-11 43.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|55377058|ref|YP_134908.1| - 9.4e-10 38.7 0.0 2.6e-09 37.2 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|55377058|ref|YP_134908.1| - 3.1e-08 33.6 0.5 7.8e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|55377058|ref|YP_134908.1| - 5.7e-08 32.6 0.0 2.1e-07 30.8 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|55377058|ref|YP_134908.1| - 0.00015 21.6 0.0 0.0003 20.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYD-SP28_assoc PF14775.6 gi|55377058|ref|YP_134908.1| - 0.45 10.7 1.3 1.4 9.1 1.3 1.8 1 0 0 1 1 1 0 Sperm tail C-terminal domain Snf7 PF03357.21 gi|55377058|ref|YP_134908.1| - 0.61 9.7 3.1 0.95 9.0 0.9 2.1 2 0 0 2 2 2 0 Snf7 ATPase PF06745.13 gi|55377059|ref|YP_134909.1| - 3e-65 219.8 0.0 2e-37 128.7 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|55377059|ref|YP_134909.1| - 3.6e-21 75.6 0.3 2.2e-10 40.4 0.3 2.9 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|55377059|ref|YP_134909.1| - 5.8e-12 46.3 1.9 6.7e-06 26.6 0.5 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|55377059|ref|YP_134909.1| - 1.5e-11 44.7 0.0 2.4e-05 24.6 0.0 2.9 2 1 0 2 2 2 2 AAA domain RecA PF00154.21 gi|55377059|ref|YP_134909.1| - 1.4e-10 41.1 0.2 7.2e-05 22.4 0.0 2.6 2 1 0 2 2 2 2 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|55377059|ref|YP_134909.1| - 2.3e-09 37.0 0.0 0.0052 16.2 0.0 3.2 2 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|55377059|ref|YP_134909.1| - 1.8e-08 34.4 0.0 0.00099 18.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|55377059|ref|YP_134909.1| - 1.3e-07 31.1 2.0 0.0085 15.4 0.0 2.9 4 0 0 4 4 3 2 Rad51 GvpD PF07088.11 gi|55377059|ref|YP_134909.1| - 1.8e-07 30.2 0.1 1.1e-06 27.5 0.1 2.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA PF00004.29 gi|55377059|ref|YP_134909.1| - 3.5e-07 30.7 0.4 0.023 15.1 0.1 2.8 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|55377059|ref|YP_134909.1| - 6.4e-07 29.3 0.0 0.0016 18.2 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein NACHT PF05729.12 gi|55377059|ref|YP_134909.1| - 1.4e-06 28.4 0.0 0.0002 21.4 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 gi|55377059|ref|YP_134909.1| - 3.1e-05 24.0 0.0 0.33 10.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|55377059|ref|YP_134909.1| - 7.8e-05 22.5 0.8 0.18 11.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|55377059|ref|YP_134909.1| - 0.00013 21.5 0.0 0.32 10.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_33 PF13671.6 gi|55377059|ref|YP_134909.1| - 0.00037 20.7 2.0 0.81 9.8 0.8 2.9 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|55377059|ref|YP_134909.1| - 0.00057 20.4 2.3 0.74 10.4 0.3 3.4 2 2 0 2 2 2 2 AAA domain MEDS PF14417.6 gi|55377059|ref|YP_134909.1| - 0.00059 19.7 0.1 0.076 12.8 0.0 2.5 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain ABC_tran PF00005.27 gi|55377059|ref|YP_134909.1| - 0.00066 20.2 2.2 0.14 12.7 0.4 2.9 2 2 0 2 2 2 1 ABC transporter AAA_19 PF13245.6 gi|55377059|ref|YP_134909.1| - 0.00079 19.8 0.0 0.2 12.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|55377059|ref|YP_134909.1| - 0.00088 19.3 0.0 2.2 8.3 0.0 3.0 2 2 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|55377059|ref|YP_134909.1| - 0.0012 19.2 0.0 0.52 10.7 0.0 2.4 2 0 0 2 2 2 1 RNA helicase CbiA PF01656.23 gi|55377059|ref|YP_134909.1| - 0.0012 18.9 0.0 0.017 15.2 0.0 2.5 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_11 PF13086.6 gi|55377059|ref|YP_134909.1| - 0.0015 18.3 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|55377059|ref|YP_134909.1| - 0.0037 17.2 0.0 0.18 11.7 0.0 2.3 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|55377059|ref|YP_134909.1| - 0.0091 15.3 0.1 0.14 11.4 0.0 2.4 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) RsgA_GTPase PF03193.16 gi|55377059|ref|YP_134909.1| - 0.01 15.7 0.7 0.056 13.4 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase T2SSE PF00437.20 gi|55377059|ref|YP_134909.1| - 0.011 14.8 0.6 1.7 7.6 0.0 2.8 3 0 0 3 3 3 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|55377059|ref|YP_134909.1| - 0.016 15.4 2.1 6.3 7.0 0.0 3.1 2 1 1 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|55377059|ref|YP_134909.1| - 0.018 14.8 4.2 0.28 11.0 1.6 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain DAP3 PF10236.9 gi|55377059|ref|YP_134909.1| - 0.051 12.7 0.0 6.6 5.8 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 PAXNEB PF05625.11 gi|55377059|ref|YP_134909.1| - 0.11 11.6 4.8 2.2 7.3 0.3 2.4 3 0 0 3 3 3 0 PAXNEB protein Mg_chelatase PF01078.21 gi|55377059|ref|YP_134909.1| - 0.11 11.8 0.2 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|55377059|ref|YP_134909.1| - 0.12 11.8 1.6 1.6 8.2 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein Rad17 PF03215.15 gi|55377059|ref|YP_134909.1| - 0.15 12.0 0.4 3.4 7.5 0.0 2.4 2 0 0 2 2 2 0 Rad17 P-loop domain TrwB_AAD_bind PF10412.9 gi|55377059|ref|YP_134909.1| - 0.18 10.7 0.0 6.4 5.6 0.0 2.5 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain Saccharop_dh_N PF04455.12 gi|55377060|ref|YP_134910.1| - 5.3e-37 126.2 0.0 1.2e-36 125.1 0.0 1.7 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|55377060|ref|YP_134910.1| - 0.00023 20.9 0.2 0.02 14.6 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|55377060|ref|YP_134910.1| - 0.0066 15.7 0.0 0.033 13.4 0.0 1.9 1 1 1 2 2 2 1 Deoxyhypusine synthase Phage_lysis PF03245.13 gi|55377061|ref|YP_134911.1| - 0.18 12.0 0.0 0.63 10.2 0.0 1.7 2 0 0 2 2 2 0 Bacteriophage Rz lysis protein TPP_enzyme_N PF02776.18 gi|55377062|ref|YP_134912.1| - 1.7e-40 138.5 1.6 5.1e-37 127.1 0.1 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|55377062|ref|YP_134912.1| - 1.8e-37 128.4 0.2 3.1e-37 127.7 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|55377062|ref|YP_134912.1| - 8.5e-35 119.5 0.3 2.7e-34 117.9 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain SRAP PF02586.14 gi|55377063|ref|YP_134913.1| - 4.2e-65 219.3 0.0 4.8e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) PALP PF00291.25 gi|55377065|ref|YP_134915.1| - 6.1e-60 203.1 3.0 7e-60 202.9 3.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|55377065|ref|YP_134915.1| - 0.0041 17.1 0.3 0.019 15.0 0.3 2.0 1 1 0 1 1 1 1 Zinc-binding dehydrogenase eIF-5_eIF-2B PF01873.17 gi|55377066|ref|YP_134916.1| - 4.2e-30 104.0 0.0 6e-30 103.5 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|55377066|ref|YP_134916.1| - 1.3e-07 31.5 1.2 1.9e-07 30.9 1.2 1.3 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|55377066|ref|YP_134916.1| - 0.019 15.3 0.4 0.062 13.7 0.5 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|55377066|ref|YP_134916.1| - 0.08 12.6 1.6 0.23 11.1 1.6 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.12 gi|55377066|ref|YP_134916.1| - 0.23 11.0 1.4 0.47 10.0 1.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_20 PF12840.7 gi|55377067|ref|YP_134917.1| - 0.0017 18.4 0.2 0.0049 16.9 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain DUF3071 PF11268.8 gi|55377067|ref|YP_134917.1| - 0.041 13.9 0.1 0.056 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) DICT PF10069.9 gi|55377068|ref|YP_134918.1| - 1.5e-15 57.1 0.0 2.4e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system FAD_binding_2 PF00890.24 gi|55377069|ref|YP_134919.1| - 1.7e-91 307.4 3.1 2.1e-91 307.1 3.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|55377069|ref|YP_134919.1| - 2.7e-19 69.4 0.0 5.5e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|55377069|ref|YP_134919.1| - 1.5e-07 31.3 1.4 3.3e-07 30.2 0.2 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|55377069|ref|YP_134919.1| - 3.6e-05 23.2 0.3 0.0001 21.7 0.3 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55377069|ref|YP_134919.1| - 0.00021 20.7 2.4 0.0011 18.2 0.6 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|55377069|ref|YP_134919.1| - 0.0044 15.8 3.2 1.4 7.5 1.5 2.9 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|55377069|ref|YP_134919.1| - 0.023 13.9 1.1 0.036 13.3 1.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|55377069|ref|YP_134919.1| - 0.08 12.6 0.2 0.13 11.8 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|55377069|ref|YP_134919.1| - 0.16 11.0 0.6 0.25 10.4 0.6 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|55377069|ref|YP_134919.1| - 0.21 11.7 0.0 0.49 10.5 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|55377069|ref|YP_134919.1| - 0.22 11.8 4.2 0.16 12.3 1.4 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|55377069|ref|YP_134919.1| - 0.62 9.3 2.7 13 4.9 0.3 2.3 2 0 0 2 2 2 0 Thi4 family Na_H_antiporter PF03553.14 gi|55377070|ref|YP_134920.1| - 8.1e-58 196.0 44.1 3.3e-52 177.6 21.2 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family TOBE_2 PF08402.10 gi|55377071|ref|YP_134921.1| - 9.1e-12 45.0 0.4 9.1e-12 45.0 0.4 3.6 3 2 2 5 5 5 1 TOBE domain ABC_tran PF00005.27 gi|55377071|ref|YP_134921.1| - 1.9e-11 44.6 0.0 7.6e-11 42.7 0.0 1.9 2 1 0 2 2 2 1 ABC transporter TOBE PF03459.17 gi|55377071|ref|YP_134921.1| - 9.3e-05 22.6 3.8 0.0018 18.5 0.1 3.6 4 0 0 4 4 4 1 TOBE domain AAA_21 PF13304.6 gi|55377071|ref|YP_134921.1| - 0.00027 20.9 0.0 0.00065 19.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_ATPase PF09818.9 gi|55377071|ref|YP_134921.1| - 0.011 14.5 0.0 0.078 11.8 0.0 2.0 1 1 0 1 1 1 0 Predicted ATPase of the ABC class SMC_N PF02463.19 gi|55377071|ref|YP_134921.1| - 0.026 14.0 0.1 0.086 12.3 0.0 1.7 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|55377071|ref|YP_134921.1| - 0.13 12.6 0.2 3.6 7.9 0.2 2.7 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.22 gi|55377072|ref|YP_134922.1| - 1.2e-30 106.6 44.0 8.4e-18 64.8 12.8 3.3 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF883 PF05957.13 gi|55377072|ref|YP_134922.1| - 8.3 7.1 6.4 50 4.6 2.6 3.5 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) SBP_bac_8 PF13416.6 gi|55377073|ref|YP_134923.1| - 3.6e-19 69.6 0.1 4.8e-19 69.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|55377073|ref|YP_134923.1| - 2.9e-18 66.2 0.0 4e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55377073|ref|YP_134923.1| - 1.4e-13 51.5 0.4 1.8e-13 51.1 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|55377073|ref|YP_134923.1| - 0.00015 21.6 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55377073|ref|YP_134923.1| - 0.14 12.0 3.4 0.33 10.9 3.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence E1_dh PF00676.20 gi|55377075|ref|YP_134925.1| - 3.5e-73 246.2 0.0 4.3e-73 245.9 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|55377075|ref|YP_134925.1| - 6.3e-05 22.3 0.0 8.8e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase HTH_41 PF14502.6 gi|55377075|ref|YP_134925.1| - 0.026 14.2 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TPP_enzyme_C PF02775.21 gi|55377075|ref|YP_134925.1| - 0.039 13.7 0.1 0.088 12.6 0.1 1.6 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Pneumo_matrix PF03393.16 gi|55377076|ref|YP_134926.1| - 0.11 11.7 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus matrix protein Nramp PF01566.18 gi|55377077|ref|YP_134927.1| - 5.7e-65 219.6 34.5 1.1e-64 218.6 34.5 1.4 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF3918 PF13056.6 gi|55377077|ref|YP_134927.1| - 2.4 7.9 4.4 0.56 9.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3918) PEP-CTERM PF07589.11 gi|55377079|ref|YP_134929.1| - 0.0036 17.3 1.4 0.067 13.3 0.0 2.3 2 0 0 2 2 2 1 PEP-CTERM motif PGPGW PF09656.10 gi|55377079|ref|YP_134929.1| - 0.072 12.6 5.0 0.079 12.5 5.0 1.1 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) KH_7 PF17214.3 gi|55377080|ref|YP_134930.1| - 2.5e-30 104.2 1.9 1.9e-28 98.2 0.6 2.8 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|55377080|ref|YP_134930.1| - 3.5e-20 72.4 0.0 7.1e-20 71.4 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|55377080|ref|YP_134930.1| - 9.3e-17 60.7 0.0 2.1e-16 59.6 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|55377080|ref|YP_134930.1| - 1e-13 51.7 3.3 5.4e-13 49.4 3.4 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55377080|ref|YP_134930.1| - 4e-11 42.8 0.1 7e-11 42.0 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|55377080|ref|YP_134930.1| - 4.5e-11 42.5 0.0 7.5e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain KH_2 PF07650.17 gi|55377080|ref|YP_134930.1| - 6.5e-07 29.1 0.2 1.7e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|55377080|ref|YP_134930.1| - 0.00072 19.5 0.1 0.002 18.0 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_1 PF00013.29 gi|55377080|ref|YP_134930.1| - 0.029 14.2 0.0 0.073 12.9 0.0 1.7 1 0 0 1 1 1 0 KH domain KH_4 PF13083.6 gi|55377080|ref|YP_134930.1| - 0.054 13.4 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 KH domain Corona_NS4 PF03905.13 gi|55377081|ref|YP_134931.1| - 0.11 12.5 0.3 1 9.4 0.0 2.2 2 0 0 2 2 2 0 Coronavirus non-structural protein NS4 Iron_transport PF10634.9 gi|55377082|ref|YP_134932.1| - 0.00049 20.3 0.0 0.0053 16.9 0.0 2.3 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|55377082|ref|YP_134932.1| - 0.001 18.8 2.1 0.0027 17.5 2.1 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Dyp_perox PF04261.12 gi|55377083|ref|YP_134933.1| - 0.00011 21.3 0.2 0.0004 19.5 0.2 1.7 1 1 0 1 1 1 1 Dyp-type peroxidase family DUF5633 PF18656.1 gi|55377084|ref|YP_134934.1| - 0.15 12.0 1.2 0.3 11.0 0.2 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5633) HTH_20 PF12840.7 gi|55377085|ref|YP_134935.1| - 9.3e-13 48.0 4.7 4.3e-07 29.9 1.1 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|55377085|ref|YP_134935.1| - 1.3e-11 43.9 0.2 8.7e-06 25.2 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55377085|ref|YP_134935.1| - 5.1e-11 42.3 0.1 1.2e-06 28.3 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55377085|ref|YP_134935.1| - 1.1e-06 28.4 3.6 0.0015 18.4 0.3 2.9 3 0 0 3 3 3 2 MarR family TrmB PF01978.19 gi|55377085|ref|YP_134935.1| - 1.8e-06 27.7 0.0 2.4e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|55377085|ref|YP_134935.1| - 3.5e-05 23.5 0.6 0.0036 17.1 0.1 2.7 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|55377085|ref|YP_134935.1| - 0.00077 19.2 0.0 0.052 13.4 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain MarR PF01047.22 gi|55377085|ref|YP_134935.1| - 0.0016 18.3 0.2 0.083 12.8 0.0 2.7 3 0 0 3 3 3 1 MarR family FaeA PF04703.12 gi|55377085|ref|YP_134935.1| - 0.0071 16.7 0.1 0.74 10.2 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein RP-C PF03428.13 gi|55377085|ref|YP_134935.1| - 0.014 15.0 0.4 0.32 10.6 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_27 PF13463.6 gi|55377085|ref|YP_134935.1| - 0.017 15.6 1.3 0.34 11.4 0.4 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|55377085|ref|YP_134935.1| - 0.044 14.0 0.0 13 6.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|55377085|ref|YP_134935.1| - 0.07 13.2 0.4 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 DprA winged helix domain Fe_dep_repress PF01325.19 gi|55377085|ref|YP_134935.1| - 0.1 12.8 0.0 14 6.0 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|55377085|ref|YP_134935.1| - 0.11 12.8 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator SAM_adeno_trans PF01887.16 gi|55377087|ref|YP_134937.1| - 4.5e-13 49.2 0.0 9.3e-13 48.2 0.0 1.4 1 1 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase HGTP_anticodon PF03129.20 gi|55377088|ref|YP_134938.1| - 4.5e-21 74.8 0.1 9.5e-21 73.8 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|55377088|ref|YP_134938.1| - 5.1e-19 68.3 0.5 1.5e-18 66.8 0.5 1.9 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.25 gi|55377088|ref|YP_134938.1| - 1.5e-18 67.4 0.0 2.5e-18 66.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) EthD PF07110.11 gi|55377088|ref|YP_134938.1| - 0.025 15.7 1.0 12 7.1 0.5 2.4 2 0 0 2 2 2 0 EthD domain VATC PF18716.1 gi|55377088|ref|YP_134938.1| - 2.3 8.2 4.2 0.8 9.6 0.1 2.2 2 0 0 2 2 2 0 Vms1-associating treble clef domain Patatin PF01734.22 gi|55377089|ref|YP_134939.1| - 1.4e-15 58.0 0.2 2.4e-15 57.3 0.2 1.4 1 0 0 1 1 1 1 Patatin-like phospholipase CBS PF00571.28 gi|55377090|ref|YP_134940.1| - 6.6e-27 93.7 4.4 8e-14 51.8 0.6 2.1 2 0 0 2 2 2 2 CBS domain PGM_PMM_I PF02878.16 gi|55377090|ref|YP_134940.1| - 0.058 13.1 0.9 0.074 12.8 0.9 1.3 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GATase_2 PF00310.21 gi|55377091|ref|YP_134941.1| - 2.4e-159 530.6 0.0 3.2e-159 530.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|55377091|ref|YP_134941.1| - 6.3e-148 492.8 0.2 3.5e-146 487.1 0.1 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|55377091|ref|YP_134941.1| - 1.4e-115 385.6 0.0 8.5e-114 379.7 0.0 2.2 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|55377091|ref|YP_134941.1| - 3.9e-79 264.7 7.8 6.8e-79 263.9 7.8 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|55377091|ref|YP_134941.1| - 0.00071 19.1 1.3 0.0013 18.2 1.3 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|55377091|ref|YP_134941.1| - 0.0021 17.2 5.6 0.0025 16.9 2.1 2.6 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Band_7 PF01145.25 gi|55377092|ref|YP_134942.1| - 3.2e-26 92.4 11.1 4.2e-26 92.0 10.5 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|55377092|ref|YP_134942.1| - 0.042 13.6 0.1 0.067 12.9 0.1 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family FliL PF03748.14 gi|55377092|ref|YP_134942.1| - 0.046 14.3 0.1 0.046 14.3 0.1 1.9 2 0 0 2 2 2 0 Flagellar basal body-associated protein FliL DUF4307 PF14155.6 gi|55377092|ref|YP_134942.1| - 3.2 7.6 7.0 7.8 6.4 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) Epimerase PF01370.21 gi|55377093|ref|YP_134943.1| - 1e-27 97.2 1.1 2.1e-25 89.6 1.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|55377093|ref|YP_134943.1| - 4.9e-06 25.9 0.1 0.014 14.5 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|55377093|ref|YP_134943.1| - 7.1e-06 25.2 0.0 0.00079 18.5 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|55377093|ref|YP_134943.1| - 7.2e-05 22.3 0.0 0.34 10.3 0.0 2.2 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|55377093|ref|YP_134943.1| - 0.092 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Regulator_TrmB PF11495.8 gi|55377094|ref|YP_134944.1| - 1.5e-63 214.1 0.0 1.9e-63 213.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|55377094|ref|YP_134944.1| - 7.1e-18 64.3 0.0 1.4e-17 63.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|55377094|ref|YP_134944.1| - 0.00092 19.0 0.0 0.034 14.0 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|55377094|ref|YP_134944.1| - 0.0041 17.4 0.0 0.064 13.6 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|55377094|ref|YP_134944.1| - 0.018 15.0 0.0 0.067 13.1 0.0 2.0 1 1 0 1 1 1 0 MarR family Glyco_hydro_3 PF00933.21 gi|55377095|ref|YP_134945.1| - 8.4e-62 209.4 0.0 1.1e-61 209.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|55377095|ref|YP_134945.1| - 2.5e-36 125.6 0.0 5.1e-36 124.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|55377095|ref|YP_134945.1| - 7.4e-12 45.2 0.1 1.5e-11 44.2 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain TAT_signal PF10518.9 gi|55377095|ref|YP_134945.1| - 1.5e-05 24.6 8.9 3.6e-05 23.4 8.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|55377095|ref|YP_134945.1| - 0.24 10.8 3.3 0.88 9.0 3.3 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fe-ADH_2 PF13685.6 gi|55377096|ref|YP_134946.1| - 9e-62 209.0 3.5 1.1e-61 208.7 3.5 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|55377096|ref|YP_134946.1| - 3.2e-18 65.7 5.0 7.9e-18 64.4 5.0 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|55377096|ref|YP_134946.1| - 1.1e-09 37.8 0.2 2.9e-09 36.5 0.2 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase NUDIX PF00293.28 gi|55377097|ref|YP_134947.1| - 0.0012 18.9 0.2 0.0018 18.3 0.2 1.3 1 0 0 1 1 1 1 NUDIX domain Peptidase_S9 PF00326.21 gi|55377098|ref|YP_134948.1| - 6.9e-47 159.7 0.0 1.1e-46 159.0 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|55377098|ref|YP_134948.1| - 1.4e-12 47.8 0.1 2.6e-06 27.3 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|55377098|ref|YP_134948.1| - 2.8e-12 46.8 0.0 6e-08 32.6 0.1 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|55377098|ref|YP_134948.1| - 6.4e-12 45.5 0.0 1.8e-11 44.0 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|55377098|ref|YP_134948.1| - 1e-11 44.5 0.3 5.3e-07 29.1 0.1 2.7 2 1 1 3 3 3 2 Serine aminopeptidase, S33 PD40 PF07676.12 gi|55377098|ref|YP_134948.1| - 4.5e-09 36.0 1.0 4e-06 26.6 0.1 4.0 3 0 0 3 3 3 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.15 gi|55377098|ref|YP_134948.1| - 3.9e-06 25.9 0.0 5.3e-06 25.5 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.12 gi|55377098|ref|YP_134948.1| - 5.8e-06 25.2 0.0 0.0058 15.3 0.0 2.1 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 gi|55377098|ref|YP_134948.1| - 0.00051 20.0 0.1 0.016 15.1 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|55377098|ref|YP_134948.1| - 0.00062 19.7 0.0 0.027 14.4 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|55377098|ref|YP_134948.1| - 0.0008 20.1 5.1 0.0015 19.2 1.9 2.7 2 1 0 2 2 2 1 Alpha/beta hydrolase family DPPIV_N PF00930.21 gi|55377098|ref|YP_134948.1| - 0.0029 16.4 0.0 6.2 5.5 0.0 3.6 3 1 0 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_2 PF02230.16 gi|55377098|ref|YP_134948.1| - 0.0041 16.9 0.0 1.4 8.7 0.0 2.5 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Esterase PF00756.20 gi|55377098|ref|YP_134948.1| - 0.038 13.6 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative esterase Abhydrolase_4 PF08386.10 gi|55377098|ref|YP_134948.1| - 0.041 14.0 0.0 0.079 13.1 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein PQQ PF01011.21 gi|55377098|ref|YP_134948.1| - 0.092 12.7 0.1 13 5.9 0.0 3.4 3 0 0 3 3 3 0 PQQ enzyme repeat Peptidase_S28 PF05577.12 gi|55377098|ref|YP_134948.1| - 0.15 10.8 0.0 0.22 10.3 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 LIP PF03583.14 gi|55377098|ref|YP_134948.1| - 0.21 10.9 0.1 14 4.9 0.0 2.1 1 1 0 2 2 2 0 Secretory lipase Glyco_trans_4_4 PF13579.6 gi|55377099|ref|YP_134949.1| - 4.8e-17 62.9 10.1 2.8e-16 60.4 7.4 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|55377099|ref|YP_134949.1| - 8e-16 58.5 0.4 5.1e-15 55.9 0.1 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|55377099|ref|YP_134949.1| - 3.2e-15 56.1 0.0 6e-15 55.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55377099|ref|YP_134949.1| - 2e-13 51.0 0.0 7.7e-13 49.0 0.0 2.0 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|55377099|ref|YP_134949.1| - 2.8e-05 24.2 0.0 0.00019 21.4 0.0 2.2 2 2 1 3 3 3 1 Glycosyl transferase 4-like Na_H_antiporter PF03553.14 gi|55377100|ref|YP_134950.1| - 5.6e-39 134.2 27.1 2.7e-38 131.9 16.8 3.4 2 1 1 3 3 3 2 Na+/H+ antiporter family DcuC PF03606.15 gi|55377100|ref|YP_134950.1| - 1.3e-05 23.9 11.8 0.013 14.0 7.0 2.3 2 0 0 2 2 2 2 C4-dicarboxylate anaerobic carrier DUF2970 PF11174.8 gi|55377100|ref|YP_134950.1| - 5.6 6.9 15.7 1.6 8.7 0.2 4.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2970) ERCC3_RAD25_C PF16203.5 gi|55377101|ref|YP_134951.1| - 3.6e-20 72.2 0.0 4.9e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|55377101|ref|YP_134951.1| - 2.1e-17 63.7 0.0 3.1e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|55377101|ref|YP_134951.1| - 2.1e-12 46.4 0.0 3e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|55377101|ref|YP_134951.1| - 2.6e-12 47.1 0.0 7.1e-12 45.7 0.0 1.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|55377101|ref|YP_134951.1| - 1.2e-07 31.6 0.0 2.7e-07 30.5 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|55377101|ref|YP_134951.1| - 0.00056 19.5 1.8 0.1 12.2 0.3 3.5 3 1 1 4 4 4 1 AAA domain AAA_30 PF13604.6 gi|55377101|ref|YP_134951.1| - 0.00078 19.2 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55377101|ref|YP_134951.1| - 0.0012 19.3 0.0 0.0034 17.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|55377101|ref|YP_134951.1| - 0.0072 16.6 0.6 0.12 12.6 0.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|55377101|ref|YP_134951.1| - 0.013 15.6 0.0 0.046 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|55377101|ref|YP_134951.1| - 0.014 15.4 0.1 0.12 12.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|55377101|ref|YP_134951.1| - 0.042 13.1 0.0 0.073 12.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF4283 PF14111.6 gi|55377101|ref|YP_134951.1| - 0.058 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) AAA_11 PF13086.6 gi|55377101|ref|YP_134951.1| - 0.12 12.1 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.12 gi|55377102|ref|YP_134952.1| - 9.3e-22 77.5 0.0 1.9e-21 76.5 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55377102|ref|YP_134952.1| - 9.7e-22 77.5 0.0 1.8e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377102|ref|YP_134952.1| - 3.8e-15 56.1 0.0 4.8e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55377102|ref|YP_134952.1| - 7.1e-14 51.9 0.0 9.6e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55377102|ref|YP_134952.1| - 2.8e-11 44.0 0.0 4.9e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|55377102|ref|YP_134952.1| - 1.3e-09 37.7 0.0 1.9e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|55377102|ref|YP_134952.1| - 1.7e-06 27.5 0.0 7.3e-06 25.5 0.0 1.8 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|55377102|ref|YP_134952.1| - 1.6e-05 24.5 0.0 2.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|55377102|ref|YP_134952.1| - 0.00017 21.2 0.0 0.00022 20.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|55377102|ref|YP_134952.1| - 0.0028 16.3 0.0 0.0035 16.0 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CheR PF01739.18 gi|55377102|ref|YP_134952.1| - 0.0049 16.4 0.0 0.61 9.5 0.0 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain TPMT PF05724.11 gi|55377102|ref|YP_134952.1| - 0.0065 16.2 0.0 0.057 13.1 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MCPsignal PF00015.21 gi|55377103|ref|YP_134953.1| - 2.7e-50 170.6 54.6 5.7e-47 159.7 28.8 4.1 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|55377103|ref|YP_134953.1| - 5.6e-37 127.1 1.4 3.6e-36 124.5 0.4 2.5 2 0 0 2 2 2 1 Protoglobin DUF948 PF06103.11 gi|55377103|ref|YP_134953.1| - 1.7e-08 34.6 41.4 0.013 15.7 6.3 5.5 3 2 2 5 5 5 4 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|55377103|ref|YP_134953.1| - 0.00035 20.8 32.6 0.2 12.0 1.7 6.4 3 2 2 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 AIP3 PF03915.13 gi|55377103|ref|YP_134953.1| - 0.00042 19.5 25.3 0.0015 17.7 9.1 2.2 2 0 0 2 2 2 2 Actin interacting protein 3 DUF4047 PF13256.6 gi|55377103|ref|YP_134953.1| - 0.0011 19.2 1.3 0.0011 19.2 1.3 3.1 3 1 0 3 3 2 1 Domain of unknown function (DUF4047) MAD PF05557.13 gi|55377103|ref|YP_134953.1| - 0.0018 16.8 6.5 0.0018 16.8 6.5 2.3 1 1 1 2 2 2 1 Mitotic checkpoint protein Laminin_II PF06009.12 gi|55377103|ref|YP_134953.1| - 0.0019 18.2 38.6 0.13 12.3 1.7 4.9 4 1 1 5 5 5 2 Laminin Domain II DUF1664 PF07889.12 gi|55377103|ref|YP_134953.1| - 0.0022 18.0 34.1 0.032 14.2 6.4 4.7 3 2 2 5 5 4 3 Protein of unknown function (DUF1664) HOOK PF05622.12 gi|55377103|ref|YP_134953.1| - 0.0066 14.7 27.6 0.0064 14.7 15.4 2.2 1 1 1 2 2 2 1 HOOK protein NOG1_N PF17835.1 gi|55377103|ref|YP_134953.1| - 0.011 15.7 3.4 2.1 8.3 0.2 3.5 4 0 0 4 4 3 0 NOG1 N-terminal helical domain DUF4200 PF13863.6 gi|55377103|ref|YP_134953.1| - 0.015 15.7 17.1 0.19 12.1 3.4 3.9 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) TMPIT PF07851.13 gi|55377103|ref|YP_134953.1| - 0.023 14.0 18.3 0.25 10.6 5.1 2.8 2 1 0 2 2 2 0 TMPIT-like protein Syntaxin-6_N PF09177.11 gi|55377103|ref|YP_134953.1| - 0.024 15.2 28.2 0.059 13.9 1.2 5.3 3 2 2 5 5 5 0 Syntaxin 6, N-terminal Sec8_exocyst PF04048.14 gi|55377103|ref|YP_134953.1| - 0.035 14.0 21.6 1.4 8.8 0.0 5.0 3 2 1 4 4 4 0 Sec8 exocyst complex component specific domain Bac_globin PF01152.21 gi|55377103|ref|YP_134953.1| - 0.072 13.2 0.1 0.43 10.7 0.1 2.5 1 1 0 1 1 1 0 Bacterial-like globin NPV_P10 PF05531.12 gi|55377103|ref|YP_134953.1| - 0.11 13.0 37.7 0.74 10.3 2.0 6.4 4 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|55377103|ref|YP_134953.1| - 0.12 11.3 31.0 0.67 8.8 10.6 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|55377103|ref|YP_134953.1| - 0.13 12.3 25.9 0.79 9.7 9.9 2.7 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fib_alpha PF08702.10 gi|55377103|ref|YP_134953.1| - 0.19 11.9 27.1 0.6 10.3 4.7 5.1 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family ERM PF00769.19 gi|55377103|ref|YP_134953.1| - 0.23 11.2 29.7 0.57 10.0 11.8 2.3 2 0 0 2 2 2 0 Ezrin/radixin/moesin family YkyA PF10368.9 gi|55377103|ref|YP_134953.1| - 0.26 10.9 37.3 0.57 9.8 10.7 3.8 3 1 0 3 3 3 0 Putative cell-wall binding lipoprotein LOH1CR12 PF10158.9 gi|55377103|ref|YP_134953.1| - 0.3 11.1 15.7 0.047 13.7 0.8 3.8 3 1 1 4 4 3 0 Tumour suppressor protein FlgN PF05130.12 gi|55377103|ref|YP_134953.1| - 0.35 11.4 31.8 0.4 11.2 7.8 4.3 1 1 4 5 5 5 0 FlgN protein Med30 PF11315.8 gi|55377103|ref|YP_134953.1| - 0.38 10.9 15.0 3.2 7.9 1.2 4.1 2 1 2 4 4 3 0 Mediator complex subunit 30 ATG16 PF08614.11 gi|55377103|ref|YP_134953.1| - 0.41 10.8 29.7 0.11 12.7 9.1 3.1 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.22 gi|55377103|ref|YP_134953.1| - 0.42 10.9 26.9 0.64 10.3 4.2 4.8 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.8 gi|55377103|ref|YP_134953.1| - 0.46 9.8 42.6 1 8.6 7.6 4.9 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) CorA PF01544.18 gi|55377103|ref|YP_134953.1| - 0.52 9.6 24.9 1 8.6 3.5 3.6 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein CREPT PF16566.5 gi|55377103|ref|YP_134953.1| - 0.64 10.2 15.6 6 7.0 2.1 4.0 1 1 2 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour Exonuc_VII_S PF02609.16 gi|55377103|ref|YP_134953.1| - 0.69 10.0 8.0 18 5.5 2.0 4.5 4 1 1 5 5 4 0 Exonuclease VII small subunit Baculo_PEP_C PF04513.12 gi|55377103|ref|YP_134953.1| - 0.78 9.8 34.5 0.12 12.4 4.2 4.6 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus TolA_bind_tri PF16331.5 gi|55377103|ref|YP_134953.1| - 0.83 9.8 24.5 1.4 9.1 2.5 5.7 5 1 0 5 5 4 0 TolA binding protein trimerisation Peptidase_S64 PF08192.11 gi|55377103|ref|YP_134953.1| - 0.85 8.0 14.6 0.77 8.2 13.7 1.3 1 1 0 1 1 1 0 Peptidase family S64 Dor1 PF04124.12 gi|55377103|ref|YP_134953.1| - 1.1 7.9 20.2 0.64 8.6 4.0 3.9 2 1 0 3 3 3 0 Dor1-like family TMP_2 PF06791.13 gi|55377103|ref|YP_134953.1| - 1.1 8.9 35.4 0.64 9.7 5.8 3.9 2 1 1 4 4 4 0 Prophage tail length tape measure protein KxDL PF10241.9 gi|55377103|ref|YP_134953.1| - 1.3 9.3 15.6 5.2 7.4 0.2 5.2 3 2 2 5 5 5 0 Uncharacterized conserved protein COG2 PF06148.11 gi|55377103|ref|YP_134953.1| - 1.6 8.8 24.7 3.9 7.6 3.0 5.2 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Vip3A_N PF12495.8 gi|55377103|ref|YP_134953.1| - 1.6 8.6 10.0 16 5.4 0.4 3.9 2 2 1 3 3 3 0 Vegetative insecticide protein 3A N terminal Allexi_40kDa PF05549.11 gi|55377103|ref|YP_134953.1| - 1.9 7.9 19.3 0.38 10.2 3.7 3.1 1 1 1 3 3 3 0 Allexivirus 40kDa protein Spectrin PF00435.21 gi|55377103|ref|YP_134953.1| - 2 8.9 24.2 0.36 11.3 3.4 4.4 3 2 2 5 5 4 0 Spectrin repeat ZapB PF06005.12 gi|55377103|ref|YP_134953.1| - 2.7 8.5 24.1 0.19 12.2 2.2 5.0 3 2 2 5 5 4 0 Cell division protein ZapB Jnk-SapK_ap_N PF09744.9 gi|55377103|ref|YP_134953.1| - 2.7 8.2 27.2 2.3 8.4 3.2 3.9 3 2 1 4 4 3 0 JNK_SAPK-associated protein-1 Flagellin_IN PF07196.13 gi|55377103|ref|YP_134953.1| - 2.8 8.2 9.4 2.3 8.5 0.7 3.5 3 0 0 3 3 2 0 Flagellin hook IN motif COG5 PF10392.9 gi|55377103|ref|YP_134953.1| - 2.8 8.1 16.5 2.9 8.1 0.6 4.5 1 1 3 4 4 4 0 Golgi transport complex subunit 5 IFT57 PF10498.9 gi|55377103|ref|YP_134953.1| - 3.4 6.5 30.5 0.12 11.3 7.3 3.2 2 1 1 4 4 3 0 Intra-flagellar transport protein 57 HSBP1 PF06825.12 gi|55377103|ref|YP_134953.1| - 3.5 7.6 18.7 0.39 10.6 0.4 5.7 6 0 0 6 6 5 0 Heat shock factor binding protein 1 SKA2 PF16740.5 gi|55377103|ref|YP_134953.1| - 3.7 7.4 19.8 3.4 7.5 5.6 3.9 3 2 1 4 4 3 0 Spindle and kinetochore-associated protein 2 Muted PF14942.6 gi|55377103|ref|YP_134953.1| - 3.7 7.9 23.7 14 6.1 7.2 4.3 3 2 1 4 4 4 0 Organelle biogenesis, Muted-like protein Fez1 PF06818.15 gi|55377103|ref|YP_134953.1| - 3.8 7.9 25.1 1.9 8.9 5.6 3.1 2 1 0 2 2 2 0 Fez1 FlaC_arch PF05377.11 gi|55377103|ref|YP_134953.1| - 3.8 8.0 30.9 1.8 9.0 0.2 6.5 4 2 2 6 6 6 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|55377103|ref|YP_134953.1| - 3.9 7.5 24.1 1.1 9.4 4.6 4.2 2 1 1 3 3 2 0 Uncharacterised protein family (UPF0242) N-terminus Kre28 PF17097.5 gi|55377103|ref|YP_134953.1| - 4.3 6.2 30.2 1.8 7.4 8.4 3.0 2 1 1 3 3 3 0 Spindle pole body component LXG PF04740.12 gi|55377103|ref|YP_134953.1| - 6 6.5 38.2 0.12 12.0 7.8 4.3 3 1 1 4 4 4 0 LXG domain of WXG superfamily Tropomyosin PF00261.20 gi|55377103|ref|YP_134953.1| - 6.1 6.1 36.0 1.8 7.9 16.3 2.4 2 0 0 2 2 2 0 Tropomyosin Golgin_A5 PF09787.9 gi|55377103|ref|YP_134953.1| - 8.4 5.8 33.9 0.39 10.1 10.2 3.0 1 1 2 3 3 3 0 Golgin subfamily A member 5 Atg14 PF10186.9 gi|55377103|ref|YP_134953.1| - 8.5 5.4 14.2 5.5 6.0 0.9 3.1 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Pterin_bind PF00809.22 gi|55377104|ref|YP_134954.1| - 1.8e-79 266.9 0.0 3.1e-79 266.1 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|55377104|ref|YP_134954.1| - 1e-11 45.2 0.0 1.8e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|55377104|ref|YP_134954.1| - 1.2e-10 41.4 0.0 4.6e-10 39.6 0.0 2.1 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.6 gi|55377104|ref|YP_134954.1| - 9.8e-05 21.9 6.4 0.11 11.9 0.0 3.8 4 0 0 4 4 4 2 Phosphoenolpyruvate phosphomutase Form_Nir_trans PF01226.17 gi|55377106|ref|YP_134956.1| - 5.8e-40 137.1 18.4 6.7e-40 136.9 18.4 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter AICARFT_IMPCHas PF01808.18 gi|55377108|ref|YP_134958.1| - 1.5e-85 287.2 0.0 2e-85 286.8 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|55377108|ref|YP_134958.1| - 2.2e-41 141.6 0.0 4.4e-41 140.6 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase LPD22 PF18834.1 gi|55377108|ref|YP_134958.1| - 0.0086 16.3 0.2 0.041 14.1 0.2 2.1 2 0 0 2 2 2 1 Large polyvalent protein associated domain 22 ADH_zinc_N PF00107.26 gi|55377110|ref|YP_134960.1| - 3.5e-27 94.9 0.6 6e-27 94.2 0.4 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|55377110|ref|YP_134960.1| - 4.8e-26 90.8 0.9 8.5e-26 90.0 0.3 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|55377110|ref|YP_134960.1| - 0.00014 21.2 1.2 0.0002 20.7 1.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|55377110|ref|YP_134960.1| - 0.0012 19.9 0.1 0.0045 18.1 0.1 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|55377110|ref|YP_134960.1| - 0.0012 18.3 0.0 0.002 17.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|55377110|ref|YP_134960.1| - 0.011 15.3 0.4 0.016 14.7 0.4 1.3 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus Methyltransf_25 PF13649.6 gi|55377110|ref|YP_134960.1| - 0.028 15.1 0.2 0.079 13.7 0.2 1.9 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|55377110|ref|YP_134960.1| - 0.054 13.7 0.5 0.19 12.0 0.3 2.0 2 0 0 2 2 2 0 TrkA-N domain Methyltransf_11 PF08241.12 gi|55377110|ref|YP_134960.1| - 0.088 13.5 0.4 0.26 12.0 0.1 2.0 2 1 0 2 2 2 0 Methyltransferase domain Lyase_1 PF00206.20 gi|55377111|ref|YP_134961.1| - 5e-52 177.2 0.0 6.6e-52 176.8 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|55377111|ref|YP_134961.1| - 7.9e-42 142.0 0.0 1.5e-41 141.1 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal MFS_1 PF07690.16 gi|55377112|ref|YP_134962.1| - 2.1e-52 178.2 54.2 1.8e-27 96.2 23.8 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|55377112|ref|YP_134962.1| - 7.3e-12 44.9 27.3 4e-07 29.3 9.4 2.6 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|55377112|ref|YP_134962.1| - 1.7e-11 43.7 18.2 2.1e-09 36.8 18.2 3.2 1 1 0 1 1 1 1 MFS_1 like family MFS_4 PF06779.14 gi|55377112|ref|YP_134962.1| - 1.2e-06 28.1 32.5 5.5e-06 25.9 32.5 2.6 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Pribosyltran PF00156.27 gi|55377113|ref|YP_134963.1| - 1.8e-21 76.3 0.5 6.9e-20 71.2 0.5 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|55377113|ref|YP_134963.1| - 0.00058 19.4 0.0 0.00099 18.6 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|55377113|ref|YP_134963.1| - 0.098 12.2 0.0 0.3 10.5 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase M20_dimer PF07687.14 gi|55377114|ref|YP_134964.1| - 2.8e-22 78.7 0.0 4.5e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|55377114|ref|YP_134964.1| - 1.4e-21 77.1 0.1 4.6e-21 75.5 0.1 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|55377114|ref|YP_134964.1| - 0.047 13.4 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 Peptidase family M28 Orn_Arg_deC_N PF02784.16 gi|55377115|ref|YP_134965.1| - 1.5e-39 135.9 0.0 1.8e-39 135.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|55377115|ref|YP_134965.1| - 6.8e-21 74.3 0.0 7.4e-21 74.2 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|55377115|ref|YP_134965.1| - 2.8e-06 27.1 0.1 4.6e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain TFX_C PF14601.6 gi|55377116|ref|YP_134966.1| - 3.8e-27 94.1 0.1 5.5e-27 93.5 0.1 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|55377116|ref|YP_134966.1| - 1.8e-06 27.4 1.0 2.8e-06 26.7 1.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|55377116|ref|YP_134966.1| - 0.0048 17.2 0.3 0.012 16.0 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|55377116|ref|YP_134966.1| - 0.0098 15.9 0.1 0.019 15.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|55377116|ref|YP_134966.1| - 0.016 15.2 0.1 0.14 12.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|55377116|ref|YP_134966.1| - 0.066 13.1 0.2 0.13 12.2 0.2 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|55377116|ref|YP_134966.1| - 0.078 12.7 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.19 gi|55377116|ref|YP_134966.1| - 0.091 12.3 0.2 0.15 11.7 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Aldedh PF00171.22 gi|55377118|ref|YP_134968.1| - 2.5e-176 586.8 0.0 2.8e-176 586.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|55377118|ref|YP_134968.1| - 0.07 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Bactofilin PF04519.13 gi|55377119|ref|YP_134969.1| - 7.4e-20 71.1 24.5 5.6e-12 45.8 3.3 2.8 1 1 2 3 3 3 2 Polymer-forming cytoskeletal Phage_holin_2_4 PF16082.5 gi|55377120|ref|YP_134970.1| - 0.023 14.4 0.0 0.023 14.4 0.0 2.2 3 1 1 4 4 4 0 Bacteriophage holin family, superfamily II-like DUF4118 PF13493.6 gi|55377120|ref|YP_134970.1| - 1.5 8.7 14.3 0.086 12.6 6.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) THDPS_N_2 PF14805.6 gi|55377122|ref|YP_134971.1| - 2.5e-23 82.1 1.5 4e-23 81.4 1.5 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|55377122|ref|YP_134971.1| - 6.1e-11 41.6 4.4 0.00054 19.6 0.8 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55377122|ref|YP_134971.1| - 9.2e-05 22.1 10.0 0.0016 18.1 0.7 3.4 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Glyco_hydro_97 PF10566.9 gi|55377121|ref|YP_134972.1| - 6.3e-85 284.8 0.8 6.3e-85 284.8 0.8 1.5 2 0 0 2 2 2 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|55377121|ref|YP_134972.1| - 3.8e-62 209.8 0.0 5.7e-62 209.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal RicinB_lectin_2 PF14200.6 gi|55377121|ref|YP_134972.1| - 4.5e-59 197.2 21.7 7.8e-26 90.6 2.4 4.1 2 1 2 4 4 4 3 Ricin-type beta-trefoil lectin domain-like GH97_C PF14509.6 gi|55377121|ref|YP_134972.1| - 2.9e-28 97.9 0.3 2.9e-27 94.7 0.2 2.8 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation Ricin_B_lectin PF00652.22 gi|55377121|ref|YP_134972.1| - 1.9e-19 70.2 0.8 5.1e-19 68.8 0.2 2.1 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain CBM_35 PF16990.5 gi|55377121|ref|YP_134972.1| - 1.8e-06 28.2 5.2 0.00039 20.7 0.2 3.2 2 1 0 2 2 2 2 Carbohydrate binding module (family 35) CBM-like PF14683.6 gi|55377121|ref|YP_134972.1| - 0.0002 21.3 0.1 0.00069 19.5 0.0 1.9 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain III CBM_6 PF03422.15 gi|55377121|ref|YP_134972.1| - 0.011 16.1 1.4 0.011 16.1 1.4 3.8 3 1 0 3 3 3 0 Carbohydrate binding module (family 6) HepII_C PF18675.1 gi|55377121|ref|YP_134972.1| - 0.063 13.4 0.3 0.23 11.5 0.3 2.1 1 0 0 1 1 1 0 Heparinase II C-terminal domain DapB_C PF05173.14 gi|55377123|ref|YP_134973.1| - 1.5e-35 121.8 0.0 2.6e-35 121.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|55377123|ref|YP_134973.1| - 4e-23 81.9 1.0 1.4e-22 80.1 1.3 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|55377123|ref|YP_134973.1| - 6.1e-05 23.3 0.2 0.00015 22.0 0.2 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding PF02629.19 gi|55377123|ref|YP_134973.1| - 0.0031 18.2 4.0 0.0055 17.4 4.0 1.4 1 0 0 1 1 1 1 CoA binding domain Peripla_BP_6 PF13458.6 gi|55377123|ref|YP_134973.1| - 0.031 14.0 1.5 0.044 13.5 1.5 1.3 1 0 0 1 1 1 0 Periplasmic binding protein RmlD_sub_bind PF04321.17 gi|55377123|ref|YP_134973.1| - 0.06 12.4 1.4 0.22 10.6 0.3 1.9 1 1 1 2 2 2 0 RmlD substrate binding domain DHDPS PF00701.22 gi|55377124|ref|YP_134974.1| - 3.8e-93 311.4 0.0 4.3e-93 311.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|55377124|ref|YP_134974.1| - 0.0088 15.4 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NYN PF01936.18 gi|55377125|ref|YP_134975.1| - 1.6e-37 129.3 0.1 1.9e-37 129.0 0.1 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.19 gi|55377125|ref|YP_134975.1| - 0.028 12.9 0.1 0.037 12.5 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Clathrin PF00637.20 gi|55377125|ref|YP_134975.1| - 0.033 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS TGT_C2 PF14810.6 gi|55377126|ref|YP_134976.1| - 4.4e-22 78.0 0.3 7.5e-22 77.3 0.3 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|55377126|ref|YP_134976.1| - 8.7e-13 48.0 0.0 1.1e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 PUA domain Wzt_C PF14524.6 gi|55377127|ref|YP_134977.1| - 0.026 14.5 0.0 0.035 14.1 0.0 1.2 1 0 0 1 1 1 0 Wzt C-terminal domain BcsB PF03170.13 gi|55377127|ref|YP_134977.1| - 0.03 12.7 0.7 0.033 12.6 0.7 1.0 1 0 0 1 1 1 0 Bacterial cellulose synthase subunit DUF3244 PF11589.8 gi|55377127|ref|YP_134977.1| - 0.035 14.2 0.1 0.049 13.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) Mem_trans PF03547.18 gi|55377128|ref|YP_134978.1| - 4.9e-19 68.0 15.3 1.5e-12 46.6 11.4 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF1467 PF07330.12 gi|55377128|ref|YP_134978.1| - 0.37 10.7 6.2 0.071 13.0 2.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1467) Yip1 PF04893.17 gi|55377128|ref|YP_134978.1| - 6.5 6.4 29.0 12 5.5 17.1 3.1 1 1 1 2 2 2 0 Yip1 domain NAC PF01849.18 gi|55377129|ref|YP_134979.1| - 3e-18 65.5 0.4 4.6e-18 64.9 0.4 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|55377129|ref|YP_134979.1| - 0.00014 21.6 0.4 0.00027 20.7 0.4 1.4 1 0 0 1 1 1 1 UBA-like domain UBA PF00627.31 gi|55377129|ref|YP_134979.1| - 0.0057 16.5 1.1 0.0057 16.5 1.1 2.1 3 0 0 3 3 3 1 UBA/TS-N domain CUE PF02845.16 gi|55377129|ref|YP_134979.1| - 0.061 13.1 0.2 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 CUE domain GCD14 PF08704.10 gi|55377130|ref|YP_134980.1| - 4.9e-12 46.1 0.0 1.8e-08 34.4 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|55377130|ref|YP_134980.1| - 1.7e-07 31.2 0.0 2e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55377130|ref|YP_134980.1| - 4.5e-07 30.5 0.1 6.7e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|55377130|ref|YP_134980.1| - 4.9e-07 29.7 0.1 6.3e-07 29.4 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|55377130|ref|YP_134980.1| - 1.4e-06 28.0 0.2 1.5e-06 27.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|55377130|ref|YP_134980.1| - 3.5e-06 27.6 0.1 5.6e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377130|ref|YP_134980.1| - 1.9e-05 24.6 0.0 1.9e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|55377130|ref|YP_134980.1| - 2.9e-05 23.3 0.0 4.1e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 gi|55377130|ref|YP_134980.1| - 4.1e-05 24.5 0.1 6.1e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|55377130|ref|YP_134980.1| - 4.3e-05 23.1 0.1 7e-05 22.4 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|55377130|ref|YP_134980.1| - 0.00026 20.2 0.0 0.00034 19.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|55377130|ref|YP_134980.1| - 0.00082 18.7 0.0 0.00097 18.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|55377130|ref|YP_134980.1| - 0.016 15.2 0.1 0.024 14.6 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|55377130|ref|YP_134980.1| - 0.027 14.1 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|55377130|ref|YP_134980.1| - 0.051 14.3 0.0 0.074 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain TFIIS_C PF01096.18 gi|55377133|ref|YP_134983.1| - 2.2e-17 62.6 5.6 2.2e-17 62.6 5.6 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|55377133|ref|YP_134983.1| - 8e-08 32.0 1.5 8e-08 32.0 1.5 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|55377133|ref|YP_134983.1| - 6.2e-06 26.1 7.1 7e-05 22.7 0.8 2.4 2 1 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|55377133|ref|YP_134983.1| - 0.00011 21.6 12.7 0.00031 20.2 0.4 3.3 2 1 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|55377133|ref|YP_134983.1| - 0.00013 21.8 12.8 0.0083 16.0 2.0 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|55377133|ref|YP_134983.1| - 0.0011 19.0 11.2 0.0057 16.7 0.9 2.8 2 1 1 3 3 3 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|55377133|ref|YP_134983.1| - 0.0038 17.1 12.1 0.25 11.3 3.3 3.5 2 2 0 2 2 2 2 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|55377133|ref|YP_134983.1| - 0.01 15.7 10.9 0.44 10.6 1.4 3.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Ribosomal_S27 PF01599.19 gi|55377133|ref|YP_134983.1| - 0.011 15.8 5.4 0.064 13.4 2.3 2.5 2 0 0 2 2 2 0 Ribosomal protein S27a zf-ribbon_3 PF13248.6 gi|55377133|ref|YP_134983.1| - 0.011 15.1 13.3 0.045 13.2 2.1 3.2 3 1 0 3 3 3 0 zinc-ribbon domain DUF2387 PF09526.10 gi|55377133|ref|YP_134983.1| - 0.015 15.5 10.3 0.044 13.9 1.6 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) TerY_C PF15616.6 gi|55377133|ref|YP_134983.1| - 0.016 15.3 6.7 0.18 11.9 0.3 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain zf-RRN7 PF11781.8 gi|55377133|ref|YP_134983.1| - 0.018 14.7 11.1 0.63 9.8 0.4 4.2 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF3797 PF12677.7 gi|55377133|ref|YP_134983.1| - 0.025 14.5 6.0 0.12 12.3 0.6 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF3797) FdhE PF04216.12 gi|55377133|ref|YP_134983.1| - 0.039 13.8 0.1 0.039 13.8 0.1 2.1 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation HypA PF01155.19 gi|55377133|ref|YP_134983.1| - 0.052 13.6 11.7 0.38 10.8 1.9 2.8 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3268 PF11672.8 gi|55377133|ref|YP_134983.1| - 0.052 13.9 0.4 0.052 13.9 0.4 2.2 2 1 0 2 2 2 0 zinc-finger-containing domain DUF2752 PF10825.8 gi|55377133|ref|YP_134983.1| - 0.057 13.5 1.0 0.084 12.9 0.0 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF2752) Prok-RING_1 PF14446.6 gi|55377133|ref|YP_134983.1| - 0.09 12.7 7.2 0.16 11.9 0.4 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|55377133|ref|YP_134983.1| - 0.18 11.8 11.8 0.37 10.8 1.4 2.7 2 1 1 3 3 3 0 zinc-ribbons zf-RING_4 PF14570.6 gi|55377133|ref|YP_134983.1| - 0.19 11.6 9.5 8 6.3 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-RING_7 PF02591.15 gi|55377133|ref|YP_134983.1| - 0.3 11.3 14.4 5.1 7.4 0.8 4.1 4 1 0 4 4 4 0 C4-type zinc ribbon domain zf_UBZ PF18439.1 gi|55377133|ref|YP_134983.1| - 0.47 10.1 13.0 0.64 9.7 0.3 3.9 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-RING_5 PF14634.6 gi|55377133|ref|YP_134983.1| - 0.66 10.0 7.3 10 6.2 0.5 2.8 2 1 1 3 3 3 0 zinc-RING finger domain Zn_ribbon_SprT PF17283.2 gi|55377133|ref|YP_134983.1| - 1 9.3 7.5 8.2 6.4 0.5 2.9 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-UBP PF02148.19 gi|55377133|ref|YP_134983.1| - 1.3 9.4 6.2 1.4 9.3 0.8 2.3 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Rubredoxin_2 PF18073.1 gi|55377133|ref|YP_134983.1| - 1.7 8.5 16.3 1.5 8.6 0.6 4.0 4 0 0 4 4 4 0 Rubredoxin metal binding domain Ribosomal_L32p PF01783.23 gi|55377133|ref|YP_134983.1| - 1.7 9.0 5.7 3 8.2 0.3 2.7 3 1 0 3 3 2 0 Ribosomal L32p protein family zf-piccolo PF05715.13 gi|55377133|ref|YP_134983.1| - 1.7 8.8 10.8 5.3 7.3 1.5 3.1 2 2 0 2 2 2 0 Piccolo Zn-finger zf_C2HC_14 PF18574.1 gi|55377133|ref|YP_134983.1| - 1.8 8.4 6.8 4 7.3 0.1 3.0 3 0 0 3 3 3 0 C2HC Zing finger domain DUF2072 PF09845.9 gi|55377133|ref|YP_134983.1| - 1.9 8.8 11.6 3.5 7.9 2.3 2.7 1 1 1 2 2 2 0 Zn-ribbon containing protein zinc_ribbon_4 PF13717.6 gi|55377133|ref|YP_134983.1| - 3 7.9 12.3 1.5 8.8 5.4 3.3 2 2 1 3 3 3 0 zinc-ribbon domain zf-ZPR1 PF03367.13 gi|55377133|ref|YP_134983.1| - 4 7.3 8.8 0.41 10.5 0.5 2.4 3 0 0 3 3 2 0 ZPR1 zinc-finger domain zinc_ribbon_2 PF13240.6 gi|55377133|ref|YP_134983.1| - 4.8 7.0 17.9 2.2 8.1 1.1 3.9 3 1 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|55377133|ref|YP_134983.1| - 5.3 6.8 12.0 9.9 5.9 0.1 4.0 3 1 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|55377133|ref|YP_134983.1| - 6.6 7.5 12.2 49 4.7 3.8 3.8 2 2 2 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.7 gi|55377133|ref|YP_134983.1| - 9 6.8 13.6 9.3 6.7 0.1 4.3 3 1 2 5 5 5 0 zinc-finger binding domain of transposase IS66 YesK PF14150.6 gi|55377136|ref|YP_134986.1| - 0.03 14.5 1.8 0.031 14.5 1.8 1.1 1 0 0 1 1 1 0 YesK-like protein EMP70 PF02990.16 gi|55377137|ref|YP_134987.1| - 0.034 12.8 0.0 0.034 12.8 0.0 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 Creatininase PF02633.14 gi|55377138|ref|YP_134988.1| - 1.5e-66 224.3 0.1 1.7e-66 224.2 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Alpha-amylase PF00128.24 gi|55377139|ref|YP_134989.1| - 1.7e-114 382.9 2.4 2.3e-114 382.4 2.4 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|55377139|ref|YP_134989.1| - 8.2e-07 29.1 0.0 1.9e-06 27.9 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|55377139|ref|YP_134989.1| - 0.001 18.3 0.0 0.0015 17.7 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain DUF3459 PF11941.8 gi|55377139|ref|YP_134989.1| - 0.014 15.7 0.0 0.032 14.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Peptidase_M24 PF00557.24 gi|55377140|ref|YP_134990.1| - 4.1e-10 39.7 0.3 6.7e-10 39.0 0.3 1.4 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|55377140|ref|YP_134990.1| - 0.044 14.4 0.1 0.4 11.3 0.1 2.3 1 1 0 1 1 1 0 Creatinase/Prolidase N-terminal domain IU_nuc_hydro PF01156.19 gi|55377141|ref|YP_134991.1| - 1.7e-74 251.2 0.0 1.9e-74 251.0 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase OCD_Mu_crystall PF02423.15 gi|55377142|ref|YP_134992.1| - 8e-96 320.7 0.3 9.1e-96 320.5 0.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family S1 PF00575.23 gi|55377143|ref|YP_134993.1| - 0.0016 18.7 0.1 0.4 11.0 0.0 2.1 1 1 1 2 2 2 2 S1 RNA binding domain TRAM PF01938.20 gi|55377143|ref|YP_134993.1| - 0.042 13.9 0.3 0.056 13.4 0.3 1.2 1 0 0 1 1 1 0 TRAM domain Na_H_antiporter PF03553.14 gi|55377144|ref|YP_134994.1| - 3.7e-31 108.5 48.2 1.8e-19 70.1 19.1 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.18 gi|55377145|ref|YP_134995.1| - 7.9e-26 90.4 0.0 1.7e-25 89.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55377145|ref|YP_134995.1| - 5.4e-08 32.5 0.8 4.2e-07 29.7 0.3 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|55377145|ref|YP_134995.1| - 1.8e-07 30.9 0.2 3.3e-07 30.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|55377145|ref|YP_134995.1| - 2.4e-06 27.0 0.1 5e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55377145|ref|YP_134995.1| - 2.1e-05 24.3 0.6 0.0007 19.4 0.1 3.0 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.7 gi|55377145|ref|YP_134995.1| - 6.3e-05 22.9 0.2 0.00017 21.6 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|55377145|ref|YP_134995.1| - 8.8e-05 22.4 0.2 0.0002 21.2 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|55377145|ref|YP_134995.1| - 0.00077 19.2 0.2 0.0098 15.7 0.2 2.5 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|55377145|ref|YP_134995.1| - 0.00091 19.1 0.1 0.0053 16.7 0.1 2.3 3 0 0 3 3 3 1 HTH domain HTH_45 PF14947.6 gi|55377145|ref|YP_134995.1| - 0.013 15.5 0.5 0.029 14.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|55377145|ref|YP_134995.1| - 0.018 15.2 0.1 0.032 14.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|55377145|ref|YP_134995.1| - 0.032 14.0 0.1 0.081 12.7 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|55377145|ref|YP_134995.1| - 0.032 14.1 0.0 0.44 10.5 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|55377145|ref|YP_134995.1| - 0.039 13.8 0.1 0.16 11.8 0.1 1.9 2 0 0 2 2 2 0 HTH DNA binding domain GerE PF00196.19 gi|55377145|ref|YP_134995.1| - 0.049 13.2 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.19 gi|55377145|ref|YP_134995.1| - 0.057 13.6 0.1 0.15 12.3 0.1 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|55377145|ref|YP_134995.1| - 0.07 13.6 0.8 0.17 12.4 0.3 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|55377146|ref|YP_134996.1| - 1.1e-20 73.2 0.1 2.1e-20 72.2 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|55377146|ref|YP_134996.1| - 0.0027 17.2 0.0 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|55377146|ref|YP_134996.1| - 0.0065 16.6 0.2 0.031 14.4 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|55377146|ref|YP_134996.1| - 0.016 14.9 0.1 0.58 9.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|55377146|ref|YP_134996.1| - 0.017 15.2 0.1 0.05 13.7 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|55377146|ref|YP_134996.1| - 0.033 13.7 0.3 0.075 12.6 0.3 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 Coat_F PF07875.12 gi|55377146|ref|YP_134996.1| - 0.035 14.3 0.0 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 Coat F domain HTH_11 PF08279.12 gi|55377146|ref|YP_134996.1| - 0.045 13.7 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 HTH domain MarR_2 PF12802.7 gi|55377146|ref|YP_134996.1| - 0.054 13.4 0.0 0.29 11.1 0.0 2.4 1 1 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.16 gi|55377146|ref|YP_134996.1| - 0.074 12.8 0.0 0.24 11.2 0.0 1.9 2 1 0 2 2 2 0 LexA DNA binding domain UPF0122 PF04297.14 gi|55377146|ref|YP_134996.1| - 0.094 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_IclR PF09339.10 gi|55377146|ref|YP_134996.1| - 0.1 12.4 0.6 0.5 10.2 0.0 2.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain DUF1611 PF07755.11 gi|55377147|ref|YP_134997.1| - 1.1e-60 204.4 0.4 1.1e-60 204.4 0.4 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|55377147|ref|YP_134997.1| - 3.3e-30 104.1 0.0 7e-30 103.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|55377148|ref|YP_134998.1| - 1.6e-41 142.3 3.1 2.6e-41 141.6 3.1 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|55377148|ref|YP_134998.1| - 7e-16 58.5 0.0 7e-16 58.5 0.0 2.3 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 4HFCP_synth PF04476.13 gi|55377148|ref|YP_134998.1| - 0.0069 16.1 1.3 0.36 10.5 0.1 2.5 2 1 0 2 2 2 2 4-HFC-P synthase Bactofilin PF04519.13 gi|55377149|ref|YP_134999.1| - 6.5e-13 48.8 9.2 5.6e-10 39.4 0.5 3.4 2 1 1 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|55377149|ref|YP_134999.1| - 0.00023 20.8 16.5 0.0015 18.2 0.1 6.1 5 2 1 6 6 6 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55377149|ref|YP_134999.1| - 0.048 13.4 10.0 4.6 7.1 2.7 4.4 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase FapA PF03961.13 gi|55377149|ref|YP_134999.1| - 0.096 11.3 2.1 1.2 7.6 1.6 2.1 2 0 0 2 2 2 0 Flagellar Assembly Protein A LppX_LprAFG PF07161.13 gi|55377150|ref|YP_135000.1| - 0.0043 16.9 1.1 0.0077 16.1 1.1 1.3 1 0 0 1 1 1 1 LppX_LprAFG lipoprotein Spore_YunB PF09560.10 gi|55377150|ref|YP_135000.1| - 0.053 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Sporulation protein YunB (Spo_YunB) DUF4440 PF14534.6 gi|55377150|ref|YP_135000.1| - 0.088 13.2 3.0 0.13 12.6 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) Glyco_transf_20 PF00982.21 gi|55377151|ref|YP_135001.1| - 6.7e-115 384.5 0.0 8.1e-115 384.2 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glycos_transf_1 PF00534.20 gi|55377151|ref|YP_135001.1| - 0.00045 19.8 0.0 0.2 11.1 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55377151|ref|YP_135001.1| - 0.014 15.8 0.0 0.026 14.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 AAA_lid_2 PF17863.1 gi|55377151|ref|YP_135001.1| - 0.44 10.4 4.0 0.17 11.7 0.4 2.1 2 0 0 2 2 2 0 AAA lid domain MAF_flag10 PF01973.18 gi|55377152|ref|YP_135002.1| - 1.2e-14 54.4 0.0 1.6e-14 54.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Bac_luciferase PF00296.20 gi|55377153|ref|YP_135003.1| - 3.9e-82 276.2 1.9 4.9e-82 275.9 1.9 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PALP PF00291.25 gi|55377153|ref|YP_135003.1| - 0.056 12.9 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Multi_Drug_Res PF00893.19 gi|55377154|ref|YP_135004.1| - 4.1e-26 91.5 0.9 5.5e-26 91.1 0.9 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|55377154|ref|YP_135004.1| - 0.0022 18.1 5.9 0.0046 17.1 5.9 1.7 1 1 0 1 1 1 1 EamA-like transporter family HAD_2 PF13419.6 gi|55377155|ref|YP_135005.1| - 2.5e-13 50.5 0.0 3.1e-13 50.2 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55377155|ref|YP_135005.1| - 5.1e-09 36.7 0.7 1.8e-08 35.0 0.7 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55377155|ref|YP_135005.1| - 0.0073 16.3 0.4 0.018 15.1 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like TrkA_N PF02254.18 gi|55377156|ref|YP_135006.1| - 1e-26 93.4 0.4 1e-26 93.4 0.4 1.5 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|55377156|ref|YP_135006.1| - 9.7e-08 32.4 0.1 2.4e-07 31.2 0.1 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|55377156|ref|YP_135006.1| - 2.7e-06 27.1 1.3 4.6e-06 26.4 0.3 1.9 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|55377156|ref|YP_135006.1| - 4.8e-05 23.9 0.7 0.0012 19.4 0.0 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|55377156|ref|YP_135006.1| - 0.00017 21.6 0.2 0.00028 20.8 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|55377156|ref|YP_135006.1| - 0.0021 17.6 0.0 0.0028 17.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|55377156|ref|YP_135006.1| - 0.0039 17.1 0.1 0.0083 16.0 0.1 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|55377156|ref|YP_135006.1| - 0.0072 15.6 0.0 0.0095 15.2 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|55377156|ref|YP_135006.1| - 0.0084 15.7 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|55377156|ref|YP_135006.1| - 0.0098 16.4 0.2 0.026 15.0 0.1 1.8 2 0 0 2 2 2 1 XdhC Rossmann domain ApbA PF02558.16 gi|55377156|ref|YP_135006.1| - 0.01 15.5 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA LpxI_N PF17930.1 gi|55377156|ref|YP_135006.1| - 0.021 14.7 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 LpxI N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|55377156|ref|YP_135006.1| - 0.026 14.8 0.1 0.05 13.8 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain adh_short_C2 PF13561.6 gi|55377156|ref|YP_135006.1| - 0.035 13.7 0.2 0.13 11.8 0.0 1.8 1 1 1 2 2 2 0 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55377156|ref|YP_135006.1| - 0.036 13.5 0.2 0.07 12.6 0.0 1.6 2 0 0 2 2 2 0 short chain dehydrogenase Trp_halogenase PF04820.14 gi|55377156|ref|YP_135006.1| - 0.036 12.9 0.1 0.073 11.9 0.1 1.5 1 1 1 2 2 2 0 Tryptophan halogenase Shikimate_DH PF01488.20 gi|55377156|ref|YP_135006.1| - 0.049 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|55377156|ref|YP_135006.1| - 0.052 13.7 0.0 0.078 13.1 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|55377156|ref|YP_135006.1| - 0.074 12.3 0.1 0.1 11.9 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|55377156|ref|YP_135006.1| - 0.08 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.27 gi|55377156|ref|YP_135006.1| - 0.088 13.4 0.1 0.17 12.4 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.13 gi|55377156|ref|YP_135006.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family AA_permease_2 PF13520.6 gi|55377157|ref|YP_135007.1| - 1.2e-54 185.8 41.8 1.5e-54 185.5 41.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|55377157|ref|YP_135007.1| - 5.5e-45 153.9 37.0 7.2e-45 153.5 37.0 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|55377157|ref|YP_135007.1| - 8.9e-07 28.0 16.5 1.1e-05 24.4 2.9 2.6 3 0 0 3 3 3 2 Spore germination protein Trp_Tyr_perm PF03222.13 gi|55377157|ref|YP_135007.1| - 0.79 8.7 34.2 0.26 10.3 26.6 2.8 1 1 1 2 2 2 0 Tryptophan/tyrosine permease family Cadherin_C_2 PF16492.5 gi|55377157|ref|YP_135007.1| - 8.2 7.3 7.5 82 4.1 0.0 3.6 3 0 0 3 3 3 0 Cadherin cytoplasmic C-terminal TrkA_N PF02254.18 gi|55377158|ref|YP_135008.1| - 9.7e-26 90.3 1.4 9.7e-26 90.3 1.4 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|55377158|ref|YP_135008.1| - 3.9e-08 33.0 1.1 9.5e-08 31.8 0.3 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_10 PF13460.6 gi|55377158|ref|YP_135008.1| - 8.2e-08 32.3 1.1 1.5e-07 31.5 1.1 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Pyr_redox PF00070.27 gi|55377158|ref|YP_135008.1| - 9.4e-07 29.3 0.2 1.9e-06 28.4 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|55377158|ref|YP_135008.1| - 2.3e-05 24.8 0.5 4.2e-05 23.9 0.2 1.6 2 0 0 2 2 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|55377158|ref|YP_135008.1| - 0.00017 21.0 0.1 0.00032 20.1 0.1 1.3 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55377158|ref|YP_135008.1| - 0.00031 20.1 0.1 0.00044 19.6 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.13 gi|55377158|ref|YP_135008.1| - 0.00033 20.3 0.2 0.00051 19.7 0.2 1.2 1 0 0 1 1 1 1 NmrA-like family UDPG_MGDP_dh_N PF03721.14 gi|55377158|ref|YP_135008.1| - 0.00054 19.6 0.2 0.0013 18.4 0.2 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|55377158|ref|YP_135008.1| - 0.0023 17.8 0.2 0.0041 17.0 0.2 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|55377158|ref|YP_135008.1| - 0.0043 16.5 0.4 0.007 15.8 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|55377158|ref|YP_135008.1| - 0.0043 17.3 0.6 0.0088 16.3 0.4 1.7 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain adh_short_C2 PF13561.6 gi|55377158|ref|YP_135008.1| - 0.0073 15.9 2.2 0.011 15.3 0.4 2.0 2 1 1 3 3 3 1 Enoyl-(Acyl carrier protein) reductase DAO PF01266.24 gi|55377158|ref|YP_135008.1| - 0.0078 15.8 1.1 0.0078 15.8 1.1 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|55377158|ref|YP_135008.1| - 0.0084 16.3 0.2 0.034 14.4 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 gi|55377158|ref|YP_135008.1| - 0.0087 16.6 0.3 0.03 14.8 0.1 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_Gly3P_dh_N PF01210.23 gi|55377158|ref|YP_135008.1| - 0.013 15.5 0.0 0.03 14.3 0.0 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.14 gi|55377158|ref|YP_135008.1| - 0.016 13.9 0.1 0.025 13.3 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Trp_halogenase PF04820.14 gi|55377158|ref|YP_135008.1| - 0.023 13.6 0.1 0.03 13.2 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Thi4 PF01946.17 gi|55377158|ref|YP_135008.1| - 0.029 13.6 0.2 0.057 12.6 0.2 1.6 1 1 0 1 1 1 0 Thi4 family LpxI_N PF17930.1 gi|55377158|ref|YP_135008.1| - 0.034 14.0 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 LpxI N-terminal domain adh_short PF00106.25 gi|55377158|ref|YP_135008.1| - 0.042 13.3 1.4 0.16 11.4 0.3 2.2 1 1 2 3 3 3 0 short chain dehydrogenase ApbA PF02558.16 gi|55377158|ref|YP_135008.1| - 0.076 12.7 0.1 0.15 11.7 0.1 1.7 2 1 0 2 2 1 0 Ketopantoate reductase PanE/ApbA Glyco_trans_4_4 PF13579.6 gi|55377158|ref|YP_135008.1| - 0.092 13.2 2.1 2.3 8.7 0.1 2.4 2 1 1 3 3 3 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|55377158|ref|YP_135008.1| - 0.1 12.6 0.1 0.38 10.8 0.1 2.1 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Pterin_bind PF00809.22 gi|55377159|ref|YP_135009.1| - 1.7e-35 122.8 0.0 3.2e-35 122.0 0.0 1.4 1 1 0 1 1 1 1 Pterin binding enzyme Phyto-Amp PF15438.6 gi|55377159|ref|YP_135009.1| - 0.019 14.8 3.4 0.028 14.3 3.4 1.2 1 0 0 1 1 1 0 Antigenic membrane protein of phytoplasma HATPase_c PF02518.26 gi|55377160|ref|YP_135010.1| - 1.5e-14 54.4 0.0 2.9e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|55377160|ref|YP_135010.1| - 3.1e-11 43.7 0.1 7.6e-11 42.5 0.1 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|55377160|ref|YP_135010.1| - 4.4e-11 42.6 0.2 1.2e-10 41.2 0.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|55377160|ref|YP_135010.1| - 1.6e-08 35.0 0.0 2.8e-08 34.2 0.0 1.4 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|55377160|ref|YP_135010.1| - 0.0052 17.4 0.0 0.014 16.0 0.0 1.7 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|55377160|ref|YP_135010.1| - 0.062 13.3 0.6 0.15 12.0 0.1 2.0 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain MRG PF05712.13 gi|55377160|ref|YP_135010.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 MRG APH PF01636.23 gi|55377161|ref|YP_135011.1| - 7.8e-22 78.4 1.5 7.8e-22 78.4 1.5 1.3 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|55377161|ref|YP_135011.1| - 1.4e-07 31.1 0.1 3.7e-07 29.6 0.1 1.7 1 1 0 1 1 1 1 Fructosamine kinase DUF1679 PF07914.11 gi|55377161|ref|YP_135011.1| - 0.001 18.0 0.0 0.0014 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 gi|55377161|ref|YP_135011.1| - 0.16 11.3 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase PfkB PF00294.24 gi|55377162|ref|YP_135012.1| - 6.2e-43 147.2 4.9 1.2e-42 146.3 4.9 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase Transglut_C PF00927.22 gi|55377163|ref|YP_135013.1| - 5.7e-05 23.2 0.0 0.079 13.1 0.0 3.1 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain CARDB PF07705.11 gi|55377163|ref|YP_135013.1| - 0.0012 19.1 16.0 1.3 9.4 1.8 4.5 3 3 2 5 5 5 3 CARDB MG4 PF17789.1 gi|55377163|ref|YP_135013.1| - 1.3 9.2 6.4 7.9 6.7 0.6 3.3 3 0 0 3 3 3 0 Macroglobulin domain MG4 ABC_tran PF00005.27 gi|55377164|ref|YP_135014.1| - 1.4e-34 119.6 0.0 1.8e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377164|ref|YP_135014.1| - 4.2e-06 26.8 0.1 0.021 14.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|55377164|ref|YP_135014.1| - 0.00037 20.8 0.4 0.0033 17.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|55377164|ref|YP_135014.1| - 0.0009 18.9 0.1 0.13 11.8 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|55377164|ref|YP_135014.1| - 0.0015 18.2 0.2 0.0032 17.2 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|55377164|ref|YP_135014.1| - 0.0022 17.9 0.2 0.0063 16.4 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|55377164|ref|YP_135014.1| - 0.0023 18.3 0.8 0.0078 16.6 0.8 1.9 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|55377164|ref|YP_135014.1| - 0.0028 17.1 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|55377164|ref|YP_135014.1| - 0.009 16.5 0.2 0.02 15.4 0.2 1.5 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|55377164|ref|YP_135014.1| - 0.03 13.4 0.1 0.044 12.8 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|55377164|ref|YP_135014.1| - 0.033 13.9 0.2 0.061 13.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|55377164|ref|YP_135014.1| - 0.077 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein cobW PF02492.19 gi|55377164|ref|YP_135014.1| - 0.091 12.3 0.2 0.17 11.4 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|55377164|ref|YP_135014.1| - 0.12 12.5 0.3 1.1 9.3 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|55377164|ref|YP_135014.1| - 0.12 12.6 0.3 0.24 11.6 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|55377164|ref|YP_135014.1| - 0.13 12.5 0.5 0.27 11.4 0.5 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|55377164|ref|YP_135014.1| - 0.15 12.5 0.1 3 8.3 0.0 2.4 2 1 1 3 3 3 0 RNA helicase AAA_15 PF13175.6 gi|55377164|ref|YP_135014.1| - 0.16 11.7 0.0 1.5 8.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain PhoH PF02562.16 gi|55377164|ref|YP_135014.1| - 0.21 11.0 0.7 1.1 8.7 0.1 2.0 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.22 gi|55377164|ref|YP_135014.1| - 0.22 10.7 0.0 0.35 10.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MacB_PCD PF12704.7 gi|55377165|ref|YP_135015.1| - 1.8e-21 77.4 1.1 1.8e-21 77.4 1.1 2.1 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|55377165|ref|YP_135015.1| - 4.9e-14 52.6 5.9 1.1e-12 48.3 0.2 3.0 3 0 0 3 3 3 2 FtsX-like permease family Meth_synt_2 PF01717.18 gi|55377167|ref|YP_135017.1| - 8.9e-58 196.1 0.0 1.3e-57 195.6 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|55377167|ref|YP_135017.1| - 2.3e-12 47.1 0.0 3.4e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|55377167|ref|YP_135017.1| - 5.3e-07 29.1 0.0 6.8e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Corona_6B_7B PF03262.13 gi|55377167|ref|YP_135017.1| - 0.061 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Coronavirus 6B/7B protein Meth_synt_1 PF08267.12 gi|55377168|ref|YP_135018.1| - 3.2e-14 53.2 0.0 1.2e-13 51.3 0.0 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|55377168|ref|YP_135018.1| - 1.3e-13 51.0 0.4 1.6e-13 50.6 0.4 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain NAD_binding_5 PF07994.12 gi|55377168|ref|YP_135018.1| - 0.0062 16.0 0.3 0.013 14.9 0.1 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase Methyltransf_11 PF08241.12 gi|55377169|ref|YP_135019.1| - 7.8e-10 39.3 0.6 1.6e-08 35.1 0.3 2.4 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55377169|ref|YP_135019.1| - 4.4e-09 36.9 0.0 9.4e-08 32.7 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|55377169|ref|YP_135019.1| - 2e-08 34.0 0.0 2.4e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|55377169|ref|YP_135019.1| - 3.5e-07 30.2 0.0 6.1e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377169|ref|YP_135019.1| - 8.4e-07 29.0 0.0 4e-06 26.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|55377169|ref|YP_135019.1| - 4.8e-06 26.3 0.0 7.8e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|55377169|ref|YP_135019.1| - 5e-06 26.1 0.4 7.6e-06 25.5 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_12 PF08242.12 gi|55377169|ref|YP_135019.1| - 0.00015 22.4 0.0 0.0025 18.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|55377169|ref|YP_135019.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|55377169|ref|YP_135019.1| - 0.0019 18.0 0.0 0.0075 16.0 0.0 1.8 2 0 0 2 2 2 1 DNA methylase CMAS PF02353.20 gi|55377169|ref|YP_135019.1| - 0.0027 17.0 0.0 0.0074 15.6 0.0 1.6 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|55377169|ref|YP_135019.1| - 0.0032 17.4 0.0 0.017 15.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|55377169|ref|YP_135019.1| - 0.0054 16.7 0.0 0.0078 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|55377169|ref|YP_135019.1| - 0.0061 16.2 0.0 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) FtsJ PF01728.19 gi|55377169|ref|YP_135019.1| - 0.014 15.5 0.0 0.037 14.1 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase TrkA_N PF02254.18 gi|55377169|ref|YP_135019.1| - 0.035 14.4 0.1 0.085 13.1 0.0 1.6 2 0 0 2 2 2 0 TrkA-N domain UPF0146 PF03686.13 gi|55377169|ref|YP_135019.1| - 0.15 11.9 0.1 0.25 11.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Ubie_methyltran PF01209.18 gi|55377169|ref|YP_135019.1| - 0.17 11.2 0.0 5 6.4 0.0 2.1 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|55377169|ref|YP_135019.1| - 0.18 10.7 0.0 0.3 10.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Met_10 PF02475.16 gi|55377169|ref|YP_135019.1| - 0.26 11.0 0.0 0.34 10.6 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein RrnaAD PF00398.20 gi|55377170|ref|YP_135020.1| - 2.7e-46 157.8 0.0 3.2e-46 157.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|55377170|ref|YP_135020.1| - 1.4e-06 28.9 0.0 3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|55377170|ref|YP_135020.1| - 5.1e-05 23.8 0.0 0.00011 22.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55377170|ref|YP_135020.1| - 0.003 18.3 0.0 0.0075 17.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|55377170|ref|YP_135020.1| - 0.0079 15.8 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 Nodulation protein S (NodS) TrkA_N PF02254.18 gi|55377170|ref|YP_135020.1| - 0.12 12.6 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain Glyco_hydro_4C PF11975.8 gi|55377170|ref|YP_135020.1| - 0.16 12.0 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Methyltransf_PK PF05891.12 gi|55377170|ref|YP_135020.1| - 0.21 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase DREV PF05219.12 gi|55377170|ref|YP_135020.1| - 0.27 10.3 0.0 0.4 9.7 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF655 PF04919.12 gi|55377171|ref|YP_135021.1| - 9.2e-59 198.4 0.2 1.1e-58 198.2 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|55377171|ref|YP_135021.1| - 8e-05 22.8 0.0 0.00048 20.3 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|55377171|ref|YP_135021.1| - 0.00037 20.7 0.1 0.00073 19.7 0.1 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|55377171|ref|YP_135021.1| - 0.031 14.1 0.0 0.23 11.4 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|55377172|ref|YP_135022.1| - 5.6e-13 49.3 3.5 6.9e-13 49.0 3.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 CbiK PF06180.11 gi|55377172|ref|YP_135022.1| - 0.1 11.9 0.0 0.13 11.5 0.0 1.3 1 1 0 1 1 1 0 Cobalt chelatase (CbiK) Gluconate_2-dh3 PF13618.6 gi|55377172|ref|YP_135022.1| - 0.11 12.7 1.9 1.1 9.5 0.1 2.4 1 1 2 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 Ribosomal_L21e PF01157.18 gi|55377173|ref|YP_135023.1| - 1.8e-29 101.6 0.0 1.9e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e EF1_GNE PF00736.19 gi|55377174|ref|YP_135024.1| - 5.7e-21 74.5 0.0 6.7e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|55377175|ref|YP_135025.1| - 5.6e-07 29.4 3.9 5.6e-07 29.4 3.9 2.4 3 0 0 3 3 2 1 Domain of unknown function (DUF1610) zf-ACC PF17848.1 gi|55377175|ref|YP_135025.1| - 0.00032 20.7 10.9 0.0099 15.9 0.5 3.5 3 1 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain C1_2 PF03107.16 gi|55377175|ref|YP_135025.1| - 0.0006 20.1 10.8 0.037 14.4 3.5 2.1 1 1 1 2 2 2 2 C1 domain zf-Mss51 PF13824.6 gi|55377175|ref|YP_135025.1| - 0.0016 18.5 11.6 1.3 9.2 5.7 3.0 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS91 PF14319.6 gi|55377175|ref|YP_135025.1| - 0.0027 17.7 10.5 0.0041 17.1 10.5 1.3 1 1 0 1 1 1 1 Transposase zinc-binding domain Rhodanese_C PF12368.8 gi|55377175|ref|YP_135025.1| - 0.0084 16.5 10.2 0.0092 16.3 10.2 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal zf-ribbon_3 PF13248.6 gi|55377175|ref|YP_135025.1| - 0.012 15.0 13.6 0.75 9.3 0.2 3.5 4 0 0 4 4 4 0 zinc-ribbon domain C1_1 PF00130.22 gi|55377175|ref|YP_135025.1| - 0.012 15.4 11.4 0.016 15.1 1.4 2.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|55377175|ref|YP_135025.1| - 0.015 15.3 14.8 0.051 13.6 2.9 2.3 1 1 1 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|55377175|ref|YP_135025.1| - 0.021 14.8 5.7 0.021 14.8 5.7 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|55377175|ref|YP_135025.1| - 0.028 14.1 12.7 0.42 10.3 1.8 3.2 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.12 gi|55377175|ref|YP_135025.1| - 0.028 14.9 13.1 0.47 11.0 7.7 2.1 1 1 1 2 2 2 0 CHY zinc finger HypA PF01155.19 gi|55377175|ref|YP_135025.1| - 0.042 13.9 12.3 0.06 13.4 1.6 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|55377175|ref|YP_135025.1| - 0.046 13.6 16.5 0.41 10.6 5.5 2.9 1 1 1 2 2 2 0 HIT zinc finger zinc-ribbons_6 PF07191.12 gi|55377175|ref|YP_135025.1| - 0.054 13.5 12.6 0.69 9.9 12.6 2.0 1 1 0 1 1 1 0 zinc-ribbons HscB_4_cys PF18256.1 gi|55377175|ref|YP_135025.1| - 0.056 13.3 1.2 0.056 13.3 1.2 2.9 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf-UBP PF02148.19 gi|55377175|ref|YP_135025.1| - 0.086 13.2 0.7 0.086 13.2 0.7 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein NMD3 PF04981.13 gi|55377175|ref|YP_135025.1| - 0.11 12.0 8.9 0.11 11.9 8.9 1.0 1 0 0 1 1 1 0 NMD3 family zf-MYND PF01753.18 gi|55377175|ref|YP_135025.1| - 0.13 12.4 10.9 1.7 8.8 2.9 2.5 2 1 0 2 2 2 0 MYND finger Desulfoferrod_N PF06397.12 gi|55377175|ref|YP_135025.1| - 0.16 11.6 15.7 5.1 6.8 0.5 4.0 1 1 3 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf_UBZ PF18439.1 gi|55377175|ref|YP_135025.1| - 0.2 11.3 15.0 0.46 10.1 0.5 3.9 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_10 PF10058.9 gi|55377175|ref|YP_135025.1| - 0.2 11.4 12.1 5.2 6.9 0.1 3.8 2 1 2 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|55377175|ref|YP_135025.1| - 0.21 11.5 15.5 2.8 7.9 0.1 4.0 3 1 1 4 4 4 0 SprT-like zinc ribbon domain zf-UBR PF02207.20 gi|55377175|ref|YP_135025.1| - 0.24 11.6 12.9 1.8 8.8 10.0 2.5 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) PolC_DP2 PF03833.13 gi|55377175|ref|YP_135025.1| - 0.24 9.2 8.1 0.27 9.1 8.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C2HC5 PF06221.13 gi|55377175|ref|YP_135025.1| - 0.27 11.3 10.3 0.29 11.1 5.1 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C2H2 PF00096.26 gi|55377175|ref|YP_135025.1| - 0.36 11.4 15.5 2.3 8.8 0.7 3.8 4 0 0 4 4 4 0 Zinc finger, C2H2 type NMDAR2_C PF10565.9 gi|55377175|ref|YP_135025.1| - 0.42 9.4 8.6 0.46 9.3 8.6 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus UPF0547 PF10571.9 gi|55377175|ref|YP_135025.1| - 0.53 10.4 15.0 1.4 9.0 0.4 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|55377175|ref|YP_135025.1| - 0.72 9.7 15.9 2 8.2 4.3 3.6 2 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55377175|ref|YP_135025.1| - 0.83 9.8 18.5 11 6.2 13.1 3.7 1 1 2 3 3 3 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|55377175|ref|YP_135025.1| - 0.97 9.3 10.4 12 5.7 0.2 3.8 4 0 0 4 4 4 0 zinc-finger C2H2-type zf-tcix PF14952.6 gi|55377175|ref|YP_135025.1| - 1.1 9.0 20.1 1.3 8.7 0.8 3.5 1 1 2 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding FYVE_2 PF02318.16 gi|55377175|ref|YP_135025.1| - 1.1 9.5 8.0 1.2 9.3 8.0 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-AN1 PF01428.16 gi|55377175|ref|YP_135025.1| - 1.9 8.7 13.4 6.3 7.1 3.2 2.8 1 1 0 2 2 2 0 AN1-like Zinc finger Rubredoxin_2 PF18073.1 gi|55377175|ref|YP_135025.1| - 2.6 7.8 18.5 2.8 7.8 4.2 3.8 2 2 0 2 2 2 0 Rubredoxin metal binding domain YhfH PF14149.6 gi|55377175|ref|YP_135025.1| - 3.2 7.8 17.6 11 6.2 0.3 3.4 1 1 2 3 3 3 0 YhfH-like protein Jiv90 PF14901.6 gi|55377175|ref|YP_135025.1| - 4.2 7.6 9.6 5.7 7.2 3.6 2.0 1 1 1 2 2 2 0 Cleavage inducing molecular chaperone Sgf11 PF08209.11 gi|55377175|ref|YP_135025.1| - 4.2 7.0 15.9 0.5 10.0 0.7 3.8 1 1 3 4 4 4 0 Sgf11 (transcriptional regulation protein) Ribosomal_L37ae PF01780.19 gi|55377175|ref|YP_135025.1| - 5.1 7.3 11.1 8.9 6.5 4.5 2.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-B_box PF00643.24 gi|55377175|ref|YP_135025.1| - 6 7.1 10.5 1.1e+02 3.1 10.5 2.4 1 1 0 1 1 1 0 B-box zinc finger Zn_Tnp_IS1595 PF12760.7 gi|55377175|ref|YP_135025.1| - 6.4 6.8 19.6 5.4e+02 0.7 19.6 3.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NRDD PF13597.6 gi|55377175|ref|YP_135025.1| - 7.1 5.3 10.9 2.7 6.7 0.9 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.18 gi|55377175|ref|YP_135025.1| - 7.3 6.5 17.8 11 5.9 0.3 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.12 gi|55377175|ref|YP_135025.1| - 8.4 6.4 13.0 1.6 8.8 0.2 3.4 2 1 2 4 4 4 0 PhnA Zinc-Ribbon DUF2391 PF09622.10 gi|55377176|ref|YP_135026.1| - 1.9e-05 24.2 3.8 2.5e-05 23.8 3.8 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF1717 PF05414.11 gi|55377176|ref|YP_135026.1| - 0.17 12.4 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 Viral domain of unknown function (DUF1717) 3HCDH_N PF02737.18 gi|55377177|ref|YP_135027.1| - 6.1e-22 78.4 1.8 3.3e-21 76.0 1.8 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|55377177|ref|YP_135027.1| - 3e-14 53.4 0.0 5.3e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|55377177|ref|YP_135027.1| - 0.00017 21.6 0.2 0.00034 20.6 0.1 1.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|55377177|ref|YP_135027.1| - 0.00039 20.9 0.2 0.00087 19.8 0.2 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 gi|55377177|ref|YP_135027.1| - 0.0028 17.2 2.7 0.0036 16.9 0.5 1.9 2 0 0 2 2 2 1 NmrA-like family NAD_binding_2 PF03446.15 gi|55377177|ref|YP_135027.1| - 0.025 14.8 1.7 0.047 13.9 0.6 2.0 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DapB_N PF01113.20 gi|55377177|ref|YP_135027.1| - 0.072 13.2 1.2 0.14 12.3 1.2 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PLRV_ORF5 PF01690.17 gi|55377177|ref|YP_135027.1| - 0.15 10.8 0.3 0.19 10.4 0.3 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein AP_endonuc_2 PF01261.24 gi|55377178|ref|YP_135028.1| - 3.1e-34 118.3 3.3 3.1e-34 118.3 3.3 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|55377178|ref|YP_135028.1| - 1e-20 73.2 0.1 2.1e-20 72.2 0.1 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.8 gi|55377178|ref|YP_135028.1| - 0.029 14.4 0.0 0.24 11.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) AsnC_trans_reg PF01037.21 gi|55377178|ref|YP_135028.1| - 0.15 12.0 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Mut7-C PF01927.16 gi|55377178|ref|YP_135028.1| - 0.24 11.5 0.2 13 5.9 0.0 2.7 3 0 0 3 3 3 0 Mut7-C RNAse domain AIM24 PF01987.17 gi|55377179|ref|YP_135029.1| - 1e-54 185.4 0.0 1.1e-54 185.3 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 CBS PF00571.28 gi|55377180|ref|YP_135030.1| - 1.7e-19 70.0 0.7 4.2e-10 39.9 0.2 2.2 2 0 0 2 2 2 2 CBS domain GFO_IDH_MocA PF01408.22 gi|55377181|ref|YP_135031.1| - 1.9e-13 51.3 0.0 3.2e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|55377181|ref|YP_135031.1| - 4.9e-12 45.9 0.0 8.9e-12 45.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain MMR_HSR1_C PF08438.10 gi|55377182|ref|YP_135032.1| - 3.1e-30 105.0 0.0 5e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|55377182|ref|YP_135032.1| - 1.7e-20 73.2 0.0 1.8e-19 69.9 0.0 2.5 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|55377182|ref|YP_135032.1| - 5.3e-11 42.4 0.0 1.1e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|55377182|ref|YP_135032.1| - 1e-09 38.1 0.0 7.8e-08 32.0 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B Histidinol_dh PF00815.20 gi|55377184|ref|YP_135034.1| - 8.9e-154 512.4 6.9 1.1e-153 512.2 6.9 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase SWI2_SNF2 PF18766.1 gi|55377184|ref|YP_135034.1| - 0.075 12.7 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 SWI2/SNF2 ATPase RuvA_C PF07499.13 gi|55377184|ref|YP_135034.1| - 1.3 9.6 5.5 0.46 11.0 1.3 2.6 2 0 0 2 2 2 0 RuvA, C-terminal domain PhoD PF09423.10 gi|55377185|ref|YP_135035.1| - 4.5e-104 348.2 3.5 5.7e-104 347.9 3.5 1.1 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 gi|55377185|ref|YP_135035.1| - 1.6e-33 115.1 0.0 3.9e-33 113.8 0.0 1.7 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Pur_ac_phosph_N PF16656.5 gi|55377185|ref|YP_135035.1| - 6.8e-06 26.6 0.0 2.1e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain EF-hand_6 PF13405.6 gi|55377185|ref|YP_135035.1| - 0.081 12.9 4.8 10 6.4 0.0 3.1 2 1 0 2 2 2 0 EF-hand domain Dockerin_1 PF00404.18 gi|55377185|ref|YP_135035.1| - 0.086 13.0 9.4 0.022 14.9 5.6 2.1 2 0 0 2 2 2 0 Dockerin type I domain EF-hand_7 PF13499.6 gi|55377185|ref|YP_135035.1| - 1.6 9.3 6.1 1.7 9.2 3.2 2.7 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|55377185|ref|YP_135035.1| - 5.3 6.8 11.5 4.2 7.1 0.7 3.7 4 0 0 4 4 4 0 EF hand Fe-S_biosyn PF01521.20 gi|55377186|ref|YP_135036.1| - 2.4e-17 63.1 0.0 2.9e-17 62.9 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.12 gi|55377187|ref|YP_135037.1| - 2.1e-21 75.9 0.8 2.3e-21 75.8 0.8 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.9 gi|55377188|ref|YP_135038.1| - 1.8e-05 24.6 0.9 2.6e-05 24.0 0.9 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) PBSX_XtrA PF17356.2 gi|55377188|ref|YP_135038.1| - 0.035 14.0 0.2 6.8 6.7 0.0 2.2 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA DUF2070 PF09843.9 gi|55377189|ref|YP_135039.1| - 1 7.6 13.0 1.2 7.3 13.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) YdjM PF04307.14 gi|55377190|ref|YP_135040.1| - 1.8e-20 73.0 26.8 2.6e-19 69.2 26.8 2.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase TrbC PF04956.13 gi|55377190|ref|YP_135040.1| - 0.66 10.2 20.9 0.12 12.6 3.3 3.2 3 0 0 3 3 3 0 TrbC/VIRB2 family MS_channel PF00924.18 gi|55377191|ref|YP_135041.1| - 2.3e-13 50.2 1.6 3e-13 49.8 1.6 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Zn-ribbon_8 PF09723.10 gi|55377193|ref|YP_135043.1| - 0.058 13.5 0.3 0.092 12.9 0.3 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|55377193|ref|YP_135043.1| - 1.2 9.2 7.0 1.1 9.3 0.5 2.2 1 1 1 2 2 2 0 Zinc-ribbon 5_nucleotid_C PF02872.18 gi|55377194|ref|YP_135044.1| - 1.1e-28 100.5 0.0 1.8e-28 99.8 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|55377194|ref|YP_135044.1| - 2.7e-07 31.3 0.0 4.7e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|55377194|ref|YP_135044.1| - 0.00024 21.4 0.0 0.0013 18.9 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Usp PF00582.26 gi|55377196|ref|YP_135046.1| - 0.0013 19.3 0.0 0.0014 19.1 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family DnaI_N PF07319.11 gi|55377196|ref|YP_135046.1| - 0.05 14.3 0.0 0.057 14.1 0.0 1.2 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus DUF1205 PF06722.12 gi|55377196|ref|YP_135046.1| - 0.065 13.3 0.5 0.99 9.6 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1205) ORC4_C PF14629.6 gi|55377196|ref|YP_135046.1| - 0.12 11.7 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus MS_channel PF00924.18 gi|55377197|ref|YP_135047.1| - 2.4e-37 128.5 0.1 3.4e-37 128.0 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel Tetraspanin PF00335.20 gi|55377197|ref|YP_135047.1| - 0.15 11.8 0.5 0.19 11.4 0.5 1.1 1 0 0 1 1 1 0 Tetraspanin family PHO4 PF01384.20 gi|55377197|ref|YP_135047.1| - 1.3 8.0 6.4 3.2 6.7 0.8 2.0 1 1 1 2 2 2 0 Phosphate transporter family PAC2 PF09754.9 gi|55377198|ref|YP_135048.1| - 2.2e-25 89.9 0.0 2.5e-25 89.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family zf-ribbon_3 PF13248.6 gi|55377199|ref|YP_135049.1| - 0.0011 18.3 0.4 0.25 10.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|55377199|ref|YP_135049.1| - 0.0017 18.0 1.0 0.2 11.3 0.1 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|55377199|ref|YP_135049.1| - 0.0023 17.9 0.5 0.0033 17.4 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|55377199|ref|YP_135049.1| - 0.0034 16.9 1.4 0.0075 15.8 1.4 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|55377199|ref|YP_135049.1| - 0.0036 17.2 0.6 0.14 12.2 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DUF35_N PF12172.8 gi|55377199|ref|YP_135049.1| - 0.0036 17.1 0.6 0.49 10.3 0.0 2.3 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|55377199|ref|YP_135049.1| - 0.0038 16.9 1.1 0.084 12.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|55377199|ref|YP_135049.1| - 0.0066 16.3 1.9 0.015 15.2 1.9 1.6 1 1 0 1 1 1 1 Nudix N-terminal zinc_ribbon_6 PF14599.6 gi|55377199|ref|YP_135049.1| - 0.0081 16.2 1.1 0.089 12.8 1.1 2.0 1 1 0 1 1 1 1 Zinc-ribbon NOB1_Zn_bind PF08772.11 gi|55377199|ref|YP_135049.1| - 0.012 15.7 0.3 0.22 11.7 0.1 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf_UBZ PF18439.1 gi|55377199|ref|YP_135049.1| - 0.013 15.1 0.6 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Elf1 PF05129.13 gi|55377199|ref|YP_135049.1| - 0.016 15.3 0.1 0.018 15.1 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.6 gi|55377199|ref|YP_135049.1| - 0.017 14.9 1.3 0.37 10.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55377199|ref|YP_135049.1| - 0.019 14.9 0.4 0.032 14.1 0.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Terminase_GpA PF05876.12 gi|55377199|ref|YP_135049.1| - 0.021 13.4 0.2 0.021 13.4 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) UPF0547 PF10571.9 gi|55377199|ref|YP_135049.1| - 0.024 14.7 5.5 0.29 11.3 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|55377199|ref|YP_135049.1| - 0.026 14.6 0.2 0.028 14.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|55377199|ref|YP_135049.1| - 0.039 14.3 0.7 0.82 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.10 gi|55377199|ref|YP_135049.1| - 0.045 13.5 0.3 1.7 8.4 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Anti-TRAP PF15777.5 gi|55377199|ref|YP_135049.1| - 0.047 13.7 1.5 2.9 7.9 0.2 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_4 PF13717.6 gi|55377199|ref|YP_135049.1| - 0.05 13.5 0.2 4.8 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55377199|ref|YP_135049.1| - 0.052 13.7 3.0 0.17 12.0 2.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zf-trcl PF13451.6 gi|55377199|ref|YP_135049.1| - 0.063 13.2 0.7 0.17 11.8 0.7 1.8 1 1 0 1 1 1 0 Probable zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|55377199|ref|YP_135049.1| - 0.064 13.5 2.0 4.2 7.7 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon DNA_ligase_ZBD PF03119.16 gi|55377199|ref|YP_135049.1| - 0.1 12.6 3.3 7.1 6.8 0.4 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.12 gi|55377199|ref|YP_135049.1| - 0.13 12.3 1.7 1.1 9.3 1.7 2.0 1 1 0 1 1 1 0 zinc-ribbons PEMT PF04191.13 gi|55377200|ref|YP_135050.1| - 0.25 11.7 2.4 0.32 11.4 2.4 1.1 1 0 0 1 1 1 0 Phospholipid methyltransferase IF-2B PF01008.17 gi|55377201|ref|YP_135051.1| - 8e-50 169.6 0.1 9.4e-50 169.4 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family F-box_5 PF18511.1 gi|55377201|ref|YP_135051.1| - 0.046 13.3 0.2 0.15 11.7 0.2 1.9 1 0 0 1 1 1 0 F-box Phi_1 PF04674.12 gi|55377201|ref|YP_135051.1| - 0.15 11.4 0.0 1.3 8.2 0.0 2.0 2 0 0 2 2 2 0 Phosphate-induced protein 1 conserved region PMC2NT PF08066.12 gi|55377201|ref|YP_135051.1| - 1.1 10.0 5.4 0.8 10.4 2.5 2.1 1 1 1 2 2 2 0 PMC2NT (NUC016) domain Pilin_N PF07790.11 gi|55377202|ref|YP_135052.1| - 3e-06 28.0 0.7 2e-05 25.4 0.1 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DoxX PF07681.12 gi|55377203|ref|YP_135053.1| - 1e-07 32.4 7.4 1e-07 32.4 7.4 3.9 3 1 0 3 3 3 1 DoxX DoxD PF04173.13 gi|55377203|ref|YP_135053.1| - 0.034 14.0 10.7 0.14 12.0 0.4 3.7 3 1 0 3 3 3 0 TQO small subunit DoxD DNA_primase_S PF01896.19 gi|55377204|ref|YP_135054.1| - 1.5e-24 87.0 0.0 3.6e-24 85.8 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit Etmic-2 PF06670.11 gi|55377205|ref|YP_135055.1| - 8e-05 21.7 2.6 8e-05 21.7 2.6 1.6 1 1 0 2 2 2 1 Microneme protein Etmic-2 DUF1525 PF07511.11 gi|55377205|ref|YP_135055.1| - 0.0063 16.7 0.3 0.012 15.7 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1525) Metal_resist PF13801.6 gi|55377205|ref|YP_135055.1| - 0.0088 16.2 5.1 0.0088 16.2 5.1 2.5 2 1 1 3 3 3 1 Heavy-metal resistance M20_dimer PF07687.14 gi|55377205|ref|YP_135055.1| - 0.015 15.2 0.0 7.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Peptidase dimerisation domain Sld5 PF05916.11 gi|55377205|ref|YP_135055.1| - 0.022 15.2 0.3 0.037 14.5 0.3 1.3 1 0 0 1 1 1 0 GINS complex protein DUF2390 PF09523.10 gi|55377205|ref|YP_135055.1| - 0.075 13.4 3.3 0.14 12.5 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2390) RDD PF06271.12 gi|55377206|ref|YP_135056.1| - 3.7 7.7 13.0 1.6e+02 2.5 13.3 2.0 1 1 0 1 1 1 0 RDD family Trypsin_2 PF13365.6 gi|55377207|ref|YP_135057.1| - 8.5e-30 104.6 5.8 1.8e-29 103.6 5.8 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|55377207|ref|YP_135057.1| - 8e-12 45.4 0.3 4.3e-11 43.0 0.3 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|55377207|ref|YP_135057.1| - 1.1e-11 44.8 0.5 2.8e-11 43.6 0.1 1.9 2 0 0 2 2 2 1 PDZ domain Pico_P2A PF00947.19 gi|55377207|ref|YP_135057.1| - 0.004 17.2 0.4 0.011 15.7 0.1 1.8 2 0 0 2 2 2 1 Picornavirus core protein 2A E1-E2_ATPase PF00122.20 gi|55377209|ref|YP_135059.1| - 1.2e-54 184.6 2.0 2.5e-54 183.5 2.0 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55377209|ref|YP_135059.1| - 9.8e-45 153.4 4.4 2.3e-44 152.2 4.4 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55377209|ref|YP_135059.1| - 1e-33 115.6 4.9 5.1e-16 58.9 0.0 4.2 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.7 gi|55377209|ref|YP_135059.1| - 0.0031 17.9 0.2 0.013 15.9 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55377209|ref|YP_135059.1| - 0.0043 16.8 1.7 0.0093 15.7 1.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pox_A14 PF05767.12 gi|55377209|ref|YP_135059.1| - 0.1 12.7 0.3 0.25 11.5 0.3 1.6 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 Peripla_BP_2 PF01497.18 gi|55377210|ref|YP_135060.1| - 1.9e-17 63.6 0.0 7.2e-17 61.7 0.0 1.9 2 0 0 2 2 2 1 Periplasmic binding protein CP_ATPgrasp_2 PF14403.6 gi|55377210|ref|YP_135060.1| - 0.09 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Circularly permuted ATP-grasp type 2 Lactamase_B_3 PF13483.6 gi|55377211|ref|YP_135061.1| - 8e-21 74.6 0.1 1.2e-20 74.0 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|55377211|ref|YP_135061.1| - 1.2e-15 57.6 1.0 1.6e-15 57.2 1.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|55377211|ref|YP_135061.1| - 6.9e-06 26.2 9.0 1.6e-05 25.0 9.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HATPase_c PF02518.26 gi|55377212|ref|YP_135062.1| - 1.5e-09 38.3 0.0 2.8e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55377212|ref|YP_135062.1| - 8.3e-09 35.7 0.1 5.1e-08 33.1 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|55377212|ref|YP_135062.1| - 3.8e-06 26.9 0.3 7.9e-05 22.6 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|55377212|ref|YP_135062.1| - 0.021 14.9 0.4 0.072 13.1 0.3 2.1 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain Cob_adeno_trans PF01923.18 gi|55377212|ref|YP_135062.1| - 0.074 13.2 0.2 0.15 12.2 0.2 1.4 1 0 0 1 1 1 0 Cobalamin adenosyltransferase ILVD_EDD PF00920.21 gi|55377213|ref|YP_135063.1| - 1.1e-196 654.5 2.5 1.2e-196 654.3 2.5 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|55377213|ref|YP_135063.1| - 0.057 13.5 0.3 0.94 9.6 0.0 2.3 2 0 0 2 2 2 0 DGC domain GHMP_kinases_N PF00288.26 gi|55377214|ref|YP_135064.1| - 3.7e-06 27.1 0.5 1.7e-05 25.0 0.3 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|55377214|ref|YP_135064.1| - 0.025 14.9 0.0 0.056 13.8 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases C terminal Oxidored_FMN PF00724.20 gi|55377215|ref|YP_135065.1| - 1.3e-66 225.2 0.0 1.5e-66 225.0 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|55377215|ref|YP_135065.1| - 0.00018 20.7 0.0 0.00027 20.2 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF368 PF04018.13 gi|55377216|ref|YP_135066.1| - 9.1e-60 202.3 18.9 9.1e-60 202.3 18.9 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF368) GARS_A PF01071.19 gi|55377218|ref|YP_135068.1| - 1.8e-10 40.9 0.0 3.5e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_C PF02843.16 gi|55377218|ref|YP_135068.1| - 1.8e-09 37.8 0.0 4.6e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_5 PF13549.6 gi|55377218|ref|YP_135068.1| - 0.17 11.3 0.0 0.82 9.1 0.0 2.0 3 0 0 3 3 3 0 ATP-grasp domain HTH_24 PF13412.6 gi|55377220|ref|YP_135070.1| - 1.3e-12 47.0 0.6 1.5e-08 34.1 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55377220|ref|YP_135070.1| - 1.4e-09 37.6 2.1 1.4e-06 28.1 0.2 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|55377220|ref|YP_135070.1| - 7.4e-07 29.0 0.4 6.7e-06 25.9 0.1 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|55377220|ref|YP_135070.1| - 1.5e-05 24.8 0.2 0.00013 21.8 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_Tnp_Tc3_2 PF01498.18 gi|55377220|ref|YP_135070.1| - 9.7e-05 22.5 0.1 0.39 11.0 0.0 2.6 3 0 0 3 3 2 2 Transposase HTH_50 PF18024.1 gi|55377220|ref|YP_135070.1| - 0.0005 19.6 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_WhiA PF02650.14 gi|55377220|ref|YP_135070.1| - 0.00059 20.1 0.0 0.41 11.0 0.0 2.5 2 0 0 2 2 2 1 WhiA C-terminal HTH domain HTH_31 PF13560.6 gi|55377220|ref|YP_135070.1| - 0.0017 18.6 0.0 0.0045 17.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|55377220|ref|YP_135070.1| - 0.0019 18.2 0.0 0.0059 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix SlyX PF04102.12 gi|55377220|ref|YP_135070.1| - 0.0023 18.5 0.1 0.0092 16.6 0.0 2.0 2 0 0 2 2 1 1 SlyX LacI PF00356.21 gi|55377220|ref|YP_135070.1| - 0.0026 17.5 0.3 0.32 10.8 0.0 2.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_11 PF08279.12 gi|55377220|ref|YP_135070.1| - 0.0048 16.8 0.4 0.048 13.6 0.0 2.5 3 0 0 3 3 3 1 HTH domain YdaS_antitoxin PF15943.5 gi|55377220|ref|YP_135070.1| - 0.0073 16.2 0.0 0.019 14.8 0.0 1.8 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Phage_CI_repr PF07022.13 gi|55377220|ref|YP_135070.1| - 0.0074 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_IclR PF09339.10 gi|55377220|ref|YP_135070.1| - 0.0098 15.7 1.3 0.43 10.4 0.1 2.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|55377220|ref|YP_135070.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|55377220|ref|YP_135070.1| - 0.015 15.4 0.0 0.044 14.0 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TolA_bind_tri PF16331.5 gi|55377220|ref|YP_135070.1| - 0.018 15.1 0.5 0.036 14.1 0.1 1.7 2 0 0 2 2 1 0 TolA binding protein trimerisation TerB_C PF15615.6 gi|55377220|ref|YP_135070.1| - 0.021 15.1 2.7 0.021 15.1 2.7 2.5 2 1 0 2 2 1 0 TerB-C domain Sigma70_r4 PF04545.16 gi|55377220|ref|YP_135070.1| - 0.026 14.0 0.1 0.088 12.3 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|55377220|ref|YP_135070.1| - 0.031 14.1 0.0 0.077 12.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Syntaxin-6_N PF09177.11 gi|55377220|ref|YP_135070.1| - 0.05 14.2 1.6 2.3 8.8 0.1 2.6 2 1 1 3 3 2 0 Syntaxin 6, N-terminal HTH_27 PF13463.6 gi|55377220|ref|YP_135070.1| - 0.052 14.0 0.0 0.18 12.3 0.0 2.0 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|55377220|ref|YP_135070.1| - 0.062 13.3 0.8 0.19 11.7 0.2 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|55377220|ref|YP_135070.1| - 0.066 13.0 0.0 0.26 11.1 0.0 2.0 1 0 0 1 1 1 0 HTH DNA binding domain HTH_DeoR PF08220.12 gi|55377220|ref|YP_135070.1| - 0.12 12.1 0.0 6 6.7 0.1 2.5 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF948 PF06103.11 gi|55377220|ref|YP_135070.1| - 0.18 12.1 1.4 0.25 11.6 0.2 1.8 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF948) ABC_tran_CTD PF16326.5 gi|55377220|ref|YP_135070.1| - 0.78 10.0 4.2 0.92 9.8 0.4 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain DUF1840 PF08895.11 gi|55377220|ref|YP_135070.1| - 2.8 8.3 4.9 1.1 9.6 0.8 2.3 2 1 0 3 3 2 0 Domain of unknown function (DUF1840) Tmemb_cc2 PF10267.9 gi|55377220|ref|YP_135070.1| - 9.9 5.2 6.5 17 4.4 6.5 1.5 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein TFIIS_C PF01096.18 gi|55377221|ref|YP_135071.1| - 1.4e-17 63.2 3.5 1.4e-17 63.2 3.5 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|55377221|ref|YP_135071.1| - 1.1e-06 28.4 8.7 1.2e-06 28.2 1.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.13 gi|55377221|ref|YP_135071.1| - 2.5e-05 23.8 10.6 0.24 11.1 0.2 3.4 3 1 0 3 3 3 3 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|55377221|ref|YP_135071.1| - 5e-05 22.6 12.7 0.0017 17.7 0.8 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|55377221|ref|YP_135071.1| - 0.0001 22.2 11.7 0.00049 20.1 0.9 3.0 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55377221|ref|YP_135071.1| - 0.00047 19.8 9.3 2.4 8.0 0.2 4.2 4 0 0 4 4 4 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|55377221|ref|YP_135071.1| - 0.00093 18.7 12.9 1.7 8.3 0.1 4.2 3 1 1 4 4 4 1 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|55377221|ref|YP_135071.1| - 0.0011 18.8 12.8 0.039 13.9 1.7 2.7 2 1 1 3 3 3 2 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|55377221|ref|YP_135071.1| - 0.0022 17.7 5.0 0.4 10.3 0.1 2.2 1 1 1 2 2 2 2 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|55377221|ref|YP_135071.1| - 0.0028 17.5 9.1 0.033 14.1 2.5 3.0 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 DUF2318 PF10080.9 gi|55377221|ref|YP_135071.1| - 0.0043 17.1 8.5 0.036 14.2 1.4 3.0 2 1 1 3 3 3 1 Predicted membrane protein (DUF2318) Zn_Tnp_IS1595 PF12760.7 gi|55377221|ref|YP_135071.1| - 0.0048 16.8 1.1 0.0048 16.8 1.1 2.9 2 1 1 3 3 3 1 Transposase zinc-ribbon domain HypA PF01155.19 gi|55377221|ref|YP_135071.1| - 0.011 15.7 8.4 0.76 9.8 1.5 2.6 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|55377221|ref|YP_135071.1| - 0.016 15.3 17.5 0.36 11.0 2.4 3.6 2 2 0 3 3 3 0 Zinc ribbon domain zf-ACC PF17848.1 gi|55377221|ref|YP_135071.1| - 0.032 14.3 12.7 5.9 7.1 0.1 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zinc-ribbons_6 PF07191.12 gi|55377221|ref|YP_135071.1| - 0.072 13.1 10.4 0.14 12.2 1.2 2.4 2 1 0 2 2 2 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|55377221|ref|YP_135071.1| - 0.14 11.7 15.1 9.5 5.8 2.8 4.3 3 2 0 3 3 3 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|55377221|ref|YP_135071.1| - 0.16 11.9 12.8 28 4.8 4.8 4.1 3 1 1 4 4 4 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|55377221|ref|YP_135071.1| - 0.16 11.9 11.1 1.5 8.8 0.6 3.7 3 1 1 4 4 4 0 zinc-ribbon domain IBR PF01485.21 gi|55377221|ref|YP_135071.1| - 0.18 12.0 10.2 11 6.4 5.1 3.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zf-C4_Topoisom PF01396.19 gi|55377221|ref|YP_135071.1| - 0.23 11.3 6.8 15 5.4 0.1 3.9 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbon_6 PF10005.9 gi|55377221|ref|YP_135071.1| - 0.44 11.3 8.5 0.63 10.8 0.3 2.9 2 1 1 3 3 3 0 zinc-ribbon domain GFA PF04828.14 gi|55377221|ref|YP_135071.1| - 0.51 10.7 11.3 5.8 7.3 0.1 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Rubredoxin_2 PF18073.1 gi|55377221|ref|YP_135071.1| - 0.59 9.9 19.6 3 7.6 1.1 4.3 4 1 0 4 4 4 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 gi|55377221|ref|YP_135071.1| - 0.89 9.3 16.6 6.9 6.5 4.0 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-RING_7 PF02591.15 gi|55377221|ref|YP_135071.1| - 1.5 9.1 12.9 8.1 6.7 0.3 4.1 3 1 1 4 4 4 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|55377221|ref|YP_135071.1| - 1.5 9.0 16.4 0.83 9.8 1.0 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.6 gi|55377221|ref|YP_135071.1| - 1.9 9.1 12.3 24 5.5 0.4 4.0 3 1 1 4 4 4 0 Recombinase zinc beta ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|55377221|ref|YP_135071.1| - 1.9 8.5 14.8 21 5.1 0.1 4.1 3 1 0 3 3 3 0 PhnA Zinc-Ribbon GATA PF00320.27 gi|55377221|ref|YP_135071.1| - 2.2 8.0 11.1 2.7 7.7 0.4 3.6 3 1 0 3 3 3 0 GATA zinc finger PHD_2 PF13831.6 gi|55377221|ref|YP_135071.1| - 2.4 7.8 10.5 39 3.9 0.2 4.0 3 1 1 4 4 4 0 PHD-finger PHD PF00628.29 gi|55377221|ref|YP_135071.1| - 3.1 7.8 15.0 7.1 6.6 2.2 3.1 2 2 0 2 2 2 0 PHD-finger YhfH PF14149.6 gi|55377221|ref|YP_135071.1| - 3.3 7.8 15.1 16 5.5 0.1 4.1 3 1 1 4 4 4 0 YhfH-like protein DUF2197 PF09963.9 gi|55377221|ref|YP_135071.1| - 5.2 7.4 9.0 14 6.1 0.1 3.2 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2197) zinc_ribbon_15 PF17032.5 gi|55377221|ref|YP_135071.1| - 5.6 7.8 11.2 1.2e+03 0.3 11.2 3.1 1 1 0 1 1 1 0 zinc-ribbon family DUF35_N PF12172.8 gi|55377222|ref|YP_135072.1| - 0.092 12.6 0.2 0.15 12.0 0.2 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Baculo_PEP_C PF04513.12 gi|55377223|ref|YP_135073.1| - 6.3e-05 23.0 2.5 0.033 14.3 0.2 2.7 2 1 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.21 gi|55377223|ref|YP_135073.1| - 6.8e-05 22.6 3.8 0.0001 22.0 3.8 1.2 1 0 0 1 1 1 1 Intermediate filament protein ABC_tran_CTD PF16326.5 gi|55377223|ref|YP_135073.1| - 8.1e-05 22.8 0.6 8.1e-05 22.8 0.6 2.6 3 0 0 3 3 3 1 ABC transporter C-terminal domain HSBP1 PF06825.12 gi|55377223|ref|YP_135073.1| - 0.00039 20.2 5.6 0.17 11.7 0.0 3.7 3 0 0 3 3 3 1 Heat shock factor binding protein 1 Exonuc_VII_L PF02601.15 gi|55377223|ref|YP_135073.1| - 0.0037 16.9 1.4 0.0051 16.4 1.4 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit RHH_1 PF01402.21 gi|55377223|ref|YP_135073.1| - 0.0061 16.5 1.9 0.038 13.9 0.0 3.1 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family Apolipoprotein PF01442.18 gi|55377223|ref|YP_135073.1| - 0.012 15.6 13.2 0.067 13.1 13.2 2.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.12 gi|55377223|ref|YP_135073.1| - 0.015 15.8 7.8 0.018 15.5 0.9 3.1 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein CLZ PF16526.5 gi|55377223|ref|YP_135073.1| - 0.018 15.4 2.9 0.32 11.4 0.4 3.1 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Herpes_UL25 PF01499.16 gi|55377223|ref|YP_135073.1| - 0.022 13.3 3.1 0.023 13.2 2.3 1.4 1 1 0 1 1 1 0 Herpesvirus UL25 family DUF2884 PF11101.8 gi|55377223|ref|YP_135073.1| - 0.03 13.8 2.2 0.07 12.6 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) zf-ribbon_3 PF13248.6 gi|55377223|ref|YP_135073.1| - 0.033 13.6 2.3 1.3 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HIP1_clath_bdg PF16515.5 gi|55377223|ref|YP_135073.1| - 0.041 14.5 6.9 3 8.5 0.3 3.1 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TACC_C PF05010.14 gi|55377223|ref|YP_135073.1| - 0.045 13.5 1.1 0.22 11.3 0.2 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Zn-ribbon_8 PF09723.10 gi|55377223|ref|YP_135073.1| - 0.046 13.8 1.4 0.13 12.4 1.4 1.8 1 0 0 1 1 1 0 Zinc ribbon domain CENP-F_leu_zip PF10473.9 gi|55377223|ref|YP_135073.1| - 0.047 13.7 0.8 0.097 12.7 0.8 1.6 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Nup54 PF13874.6 gi|55377223|ref|YP_135073.1| - 0.053 13.6 1.2 1.1 9.3 0.1 2.6 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 Golgin_A5 PF09787.9 gi|55377223|ref|YP_135073.1| - 0.082 12.4 3.9 0.094 12.2 3.3 1.4 1 1 0 1 1 1 0 Golgin subfamily A member 5 Sipho_Gp157 PF05565.11 gi|55377223|ref|YP_135073.1| - 0.086 12.9 4.3 2.5 8.1 0.4 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 DUF4407 PF14362.6 gi|55377223|ref|YP_135073.1| - 0.1 11.9 9.5 0.16 11.3 9.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF148 PF02520.17 gi|55377223|ref|YP_135073.1| - 0.11 12.6 0.7 2.1 8.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF148 Med9 PF07544.13 gi|55377223|ref|YP_135073.1| - 0.11 12.6 1.7 1.6 8.8 0.4 2.9 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 HMMR_N PF15905.5 gi|55377223|ref|YP_135073.1| - 0.11 11.9 1.9 0.21 11.0 1.9 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal zinc-ribbons_6 PF07191.12 gi|55377223|ref|YP_135073.1| - 0.12 12.3 0.5 0.21 11.6 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons OmpH PF03938.14 gi|55377223|ref|YP_135073.1| - 0.14 12.5 3.2 2.6 8.4 0.3 2.3 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) zinc_ribbon_4 PF13717.6 gi|55377223|ref|YP_135073.1| - 0.17 11.9 2.7 5.9 6.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain AdoMetDC_leader PF08132.11 gi|55377223|ref|YP_135073.1| - 0.19 11.7 0.6 0.55 10.2 0.0 2.1 3 0 0 3 3 1 0 S-adenosyl-l-methionine decarboxylase leader peptide Val_tRNA-synt_C PF10458.9 gi|55377223|ref|YP_135073.1| - 0.21 11.9 1.8 1.9 8.8 0.0 2.9 3 0 0 3 3 2 0 Valyl tRNA synthetase tRNA binding arm DUF1515 PF07439.11 gi|55377223|ref|YP_135073.1| - 0.22 11.6 8.8 0.66 10.0 2.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1515) DUF1664 PF07889.12 gi|55377223|ref|YP_135073.1| - 0.24 11.5 5.2 0.55 10.3 0.6 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) CCDC-167 PF15188.6 gi|55377223|ref|YP_135073.1| - 0.28 11.6 5.1 5.1 7.5 0.4 2.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 PilJ PF13675.6 gi|55377223|ref|YP_135073.1| - 0.32 11.0 3.7 3.3 7.8 0.3 2.7 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Seryl_tRNA_N PF02403.22 gi|55377223|ref|YP_135073.1| - 0.38 11.0 5.1 1.4 9.2 1.2 3.0 2 1 1 3 3 2 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|55377223|ref|YP_135073.1| - 0.39 11.0 6.0 0.87 9.9 0.4 3.1 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.11 gi|55377223|ref|YP_135073.1| - 0.54 10.7 2.5 6 7.3 0.3 3.3 2 2 2 4 4 4 0 Flagella accessory protein C (FlaC) DUF2959 PF11172.8 gi|55377223|ref|YP_135073.1| - 0.65 10.1 6.9 0.57 10.3 2.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) TolA_bind_tri PF16331.5 gi|55377223|ref|YP_135073.1| - 0.81 9.8 5.1 0.93 9.6 1.8 2.9 2 1 0 2 2 1 0 TolA binding protein trimerisation DUF848 PF05852.11 gi|55377223|ref|YP_135073.1| - 1.2 9.2 8.6 11 6.1 6.6 2.5 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) FYVE_2 PF02318.16 gi|55377223|ref|YP_135073.1| - 2.4 8.4 4.3 4.8 7.4 0.5 2.4 1 1 0 2 2 2 0 FYVE-type zinc finger T3SSipB PF16535.5 gi|55377223|ref|YP_135073.1| - 4.7 7.7 10.6 0.24 11.9 1.8 2.4 1 1 1 2 2 2 0 Type III cell invasion protein SipB HSCB_C PF07743.13 gi|55377223|ref|YP_135073.1| - 9.3 6.8 11.1 11 6.5 0.3 3.5 2 1 1 3 3 2 0 HSCB C-terminal oligomerisation domain ATPase PF06745.13 gi|55377224|ref|YP_135074.1| - 2e-09 37.1 0.1 8.3e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|55377224|ref|YP_135074.1| - 6.3e-05 22.6 0.4 0.016 14.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|55377224|ref|YP_135074.1| - 0.0043 16.3 0.0 0.015 14.5 0.0 1.7 2 0 0 2 2 2 1 Rad51 DUF438 PF04282.13 gi|55377224|ref|YP_135074.1| - 0.042 13.8 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF438) Caroten_synth PF04240.12 gi|55377225|ref|YP_135075.1| - 4.2e-65 219.5 17.9 5.6e-65 219.1 17.9 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein UbiA PF01040.18 gi|55377226|ref|YP_135076.1| - 8.5e-30 103.9 14.0 8.5e-30 103.9 14.0 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family PIG-Y PF15159.6 gi|55377226|ref|YP_135076.1| - 0.025 15.5 2.3 0.025 15.5 2.3 3.4 2 2 1 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y Amino_oxidase PF01593.24 gi|55377227|ref|YP_135077.1| - 2.4e-35 122.7 0.1 3.5e-35 122.2 0.1 1.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|55377227|ref|YP_135077.1| - 7.2e-17 61.4 0.1 1.6e-16 60.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55377227|ref|YP_135077.1| - 3.1e-12 46.8 4.2 2.9e-11 43.6 4.2 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|55377227|ref|YP_135077.1| - 4e-07 29.8 0.0 5.4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|55377227|ref|YP_135077.1| - 5.1e-07 28.7 0.0 0.0012 17.6 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|55377227|ref|YP_135077.1| - 9.4e-06 25.0 0.7 1.9e-05 24.0 0.7 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55377227|ref|YP_135077.1| - 2.6e-05 23.6 1.7 0.00025 20.4 0.1 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55377227|ref|YP_135077.1| - 4.4e-05 22.9 0.0 0.026 13.8 0.0 3.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55377227|ref|YP_135077.1| - 0.00011 22.6 0.8 0.0047 17.5 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|55377227|ref|YP_135077.1| - 0.00022 20.6 0.2 0.00037 19.8 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|55377227|ref|YP_135077.1| - 0.00095 18.3 0.3 0.002 17.3 0.3 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A MCRA PF06100.11 gi|55377227|ref|YP_135077.1| - 0.024 13.5 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 MCRA family AlaDh_PNT_C PF01262.21 gi|55377227|ref|YP_135077.1| - 0.031 13.6 0.1 0.055 12.8 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|55377227|ref|YP_135077.1| - 0.066 12.4 0.2 0.11 11.7 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_9 PF13454.6 gi|55377227|ref|YP_135077.1| - 0.11 12.4 1.1 8.9 6.3 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|55377227|ref|YP_135077.1| - 0.25 10.2 0.1 0.43 9.4 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Peptidase_M24 PF00557.24 gi|55377228|ref|YP_135078.1| - 3.9e-45 154.1 0.8 5e-45 153.8 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|55377228|ref|YP_135078.1| - 8.3e-08 33.0 1.3 1.5e-07 32.1 0.2 2.0 2 1 1 3 3 3 1 Creatinase/Prolidase N-terminal domain RHH_1 PF01402.21 gi|55377229|ref|YP_135079.1| - 0.0002 21.2 0.0 0.00032 20.5 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Ribosomal_L15e PF00827.17 gi|55377229|ref|YP_135079.1| - 0.1 12.3 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal L15 DbpA PF03880.15 gi|55377229|ref|YP_135079.1| - 0.18 11.9 0.0 0.31 11.1 0.0 1.5 1 1 0 1 1 1 0 DbpA RNA binding domain Med4 PF10018.9 gi|55377231|ref|YP_135081.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Glyoxalase PF00903.25 gi|55377232|ref|YP_135082.1| - 1.4e-11 44.7 0.0 1.7e-07 31.5 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|55377232|ref|YP_135082.1| - 5.4e-06 27.1 1.6 0.043 14.6 0.1 2.6 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|55377232|ref|YP_135082.1| - 0.095 12.6 0.0 2.2 8.2 0.0 2.6 3 0 0 3 3 3 0 Glyoxalase-like domain Acetyltransf_10 PF13673.7 gi|55377232|ref|YP_135082.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DZR PF12773.7 gi|55377233|ref|YP_135083.1| - 0.00029 20.8 1.6 0.00043 20.2 1.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|55377233|ref|YP_135083.1| - 0.0015 18.4 3.7 0.51 10.3 0.1 2.4 2 1 0 2 2 2 2 PhnA Zinc-Ribbon UPF0547 PF10571.9 gi|55377233|ref|YP_135083.1| - 0.0019 18.3 3.9 0.069 13.2 0.2 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|55377233|ref|YP_135083.1| - 0.0039 17.1 1.4 0.0079 16.2 1.4 1.5 1 1 0 1 1 1 1 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|55377233|ref|YP_135083.1| - 0.0053 16.2 3.7 0.43 10.1 0.0 2.5 3 0 0 3 3 3 2 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|55377233|ref|YP_135083.1| - 0.0054 16.4 4.1 0.44 10.3 0.1 2.8 3 0 0 3 3 3 2 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|55377233|ref|YP_135083.1| - 0.023 15.0 4.8 0.16 12.2 1.3 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|55377233|ref|YP_135083.1| - 0.027 14.6 3.8 3 8.0 0.1 2.4 2 1 0 2 2 2 0 Zinc ribbon domain DUF3268 PF11672.8 gi|55377233|ref|YP_135083.1| - 0.038 14.3 0.5 0.049 14.0 0.5 1.2 1 0 0 1 1 1 0 zinc-finger-containing domain DUF1272 PF06906.11 gi|55377233|ref|YP_135083.1| - 0.053 13.6 2.2 0.5 10.5 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.6 gi|55377233|ref|YP_135083.1| - 0.062 12.7 4.1 0.69 9.4 0.1 2.5 3 0 0 3 3 3 0 zinc-ribbon domain GFA PF04828.14 gi|55377233|ref|YP_135083.1| - 0.077 13.3 3.3 2.2 8.7 0.4 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Terminase_GpA PF05876.12 gi|55377233|ref|YP_135083.1| - 0.087 11.4 2.4 0.095 11.2 2.4 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) HypA PF01155.19 gi|55377233|ref|YP_135083.1| - 0.091 12.8 1.5 0.17 11.9 1.5 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA A2L_zn_ribbon PF08792.10 gi|55377233|ref|YP_135083.1| - 0.12 12.2 0.8 1.5 8.6 0.0 2.4 2 1 0 2 2 2 0 A2L zinc ribbon domain zf-DNA_Pol PF08996.10 gi|55377233|ref|YP_135083.1| - 0.13 12.0 0.6 0.16 11.7 0.6 1.3 1 1 0 1 1 1 0 DNA Polymerase alpha zinc finger Zn_ribbon_SprT PF17283.2 gi|55377233|ref|YP_135083.1| - 0.16 11.9 6.5 0.65 9.9 1.3 2.4 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|55377233|ref|YP_135083.1| - 0.26 10.9 11.3 0.44 10.2 1.0 3.2 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger DNA_RNApol_7kD PF03604.13 gi|55377233|ref|YP_135083.1| - 0.28 10.9 2.8 3.4 7.4 0.0 2.4 3 0 0 3 3 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF1610 PF07754.11 gi|55377233|ref|YP_135083.1| - 0.34 10.9 3.3 11 6.1 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.11 gi|55377233|ref|YP_135083.1| - 0.65 10.0 3.8 2.5 8.1 3.7 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.6 gi|55377233|ref|YP_135083.1| - 0.66 10.1 6.8 3.7 7.7 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS91 PF14319.6 gi|55377233|ref|YP_135083.1| - 0.85 9.7 5.0 5.4 7.1 5.0 2.0 1 1 0 1 1 1 0 Transposase zinc-binding domain Nudix_N_2 PF14803.6 gi|55377233|ref|YP_135083.1| - 2.2 8.3 10.5 1.6 8.7 0.2 3.4 2 1 1 3 3 3 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|55377233|ref|YP_135083.1| - 2.2 8.3 8.5 8.1 6.5 7.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|55377233|ref|YP_135083.1| - 3.7 7.6 8.6 6.1 7.0 0.3 2.7 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_5 PF13719.6 gi|55377233|ref|YP_135083.1| - 4.3 7.2 5.7 12 5.7 1.0 2.5 2 1 0 2 2 2 0 zinc-ribbon domain HMGL-like PF00682.19 gi|55377235|ref|YP_135085.1| - 2.3e-66 224.1 4.8 2.3e-66 224.1 4.8 1.4 2 0 0 2 2 2 1 HMGL-like AP_endonuc_2 PF01261.24 gi|55377235|ref|YP_135085.1| - 0.026 13.9 0.4 0.47 9.9 0.1 2.5 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel TPP_enzyme_C PF02775.21 gi|55377236|ref|YP_135086.1| - 2.1e-51 173.7 0.2 6.1e-51 172.2 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|55377236|ref|YP_135086.1| - 3.6e-51 173.2 0.3 7.9e-51 172.1 0.3 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|55377236|ref|YP_135086.1| - 4.9e-47 159.1 0.0 8.9e-47 158.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|55377236|ref|YP_135086.1| - 0.0057 16.4 0.0 0.0095 15.7 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit XFP_N PF09364.10 gi|55377236|ref|YP_135086.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain TP_methylase PF00590.20 gi|55377236|ref|YP_135086.1| - 0.17 11.8 1.1 0.54 10.2 0.9 2.0 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases ALS_ss_C PF10369.9 gi|55377237|ref|YP_135087.1| - 3.6e-23 81.6 0.1 6.1e-23 80.8 0.1 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT PF01842.25 gi|55377237|ref|YP_135087.1| - 2.3e-13 49.7 0.2 7.2e-13 48.1 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_5 PF13710.6 gi|55377237|ref|YP_135087.1| - 2.5e-12 46.4 0.0 6.2e-12 45.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|55377237|ref|YP_135087.1| - 0.003 18.1 0.0 0.0059 17.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain NIL PF09383.10 gi|55377237|ref|YP_135087.1| - 0.031 14.1 0.3 4.2 7.3 0.0 2.8 3 1 0 3 3 3 0 NIL domain Acylphosphatase PF00708.18 gi|55377237|ref|YP_135087.1| - 0.054 13.9 0.3 13 6.2 0.0 2.8 3 0 0 3 3 3 0 Acylphosphatase KH_1 PF00013.29 gi|55377237|ref|YP_135087.1| - 0.081 12.8 0.6 0.74 9.7 0.2 2.7 2 1 0 2 2 2 0 KH domain IlvN PF07991.12 gi|55377238|ref|YP_135088.1| - 7.9e-71 236.9 0.1 1.1e-70 236.5 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|55377238|ref|YP_135088.1| - 7.6e-60 201.4 1.8 1.1e-59 200.8 1.8 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|55377238|ref|YP_135088.1| - 1.8e-06 28.4 0.0 3.9e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|55377238|ref|YP_135088.1| - 5.3e-05 22.7 0.0 0.0001 21.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|55377238|ref|YP_135088.1| - 0.0018 17.9 0.0 0.0029 17.3 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|55377238|ref|YP_135088.1| - 0.0021 18.3 0.0 0.004 17.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DMP12 PF16779.5 gi|55377238|ref|YP_135088.1| - 0.15 12.0 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 DNA-mimic protein Aconitase PF00330.20 gi|55377240|ref|YP_135090.1| - 2.2e-147 491.8 0.0 2.4e-147 491.7 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|55377240|ref|YP_135090.1| - 0.0019 17.0 0.0 0.0033 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF3944 PF13099.6 gi|55377240|ref|YP_135090.1| - 0.069 13.0 0.0 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) Aconitase_C PF00694.19 gi|55377241|ref|YP_135091.1| - 3.1e-18 66.4 0.0 5e-18 65.7 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Cas_Cas02710 PF09670.10 gi|55377242|ref|YP_135092.1| - 4.4e-05 22.4 0.0 5.7e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Cas_APE2256 PF09651.10 gi|55377242|ref|YP_135092.1| - 0.035 14.0 0.0 0.083 12.8 0.0 1.7 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_APE2256) KR PF08659.10 gi|55377242|ref|YP_135092.1| - 0.044 13.7 0.0 0.069 13.1 0.0 1.3 1 0 0 1 1 1 0 KR domain DUF4364 PF14277.6 gi|55377242|ref|YP_135092.1| - 0.051 13.3 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) ThiC_Rad_SAM PF01964.18 gi|55377242|ref|YP_135092.1| - 0.084 11.6 0.2 0.13 11.1 0.2 1.2 1 0 0 1 1 1 0 Radical SAM ThiC family Response_reg PF00072.24 gi|55377243|ref|YP_135093.1| - 6.2e-22 77.9 0.1 1.1e-21 77.0 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|55377243|ref|YP_135093.1| - 2.8e-07 30.5 0.0 7.1e-07 29.2 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|55377243|ref|YP_135093.1| - 5.2e-07 29.9 0.0 1.4e-06 28.5 0.0 1.7 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|55377243|ref|YP_135093.1| - 5.6e-06 26.6 0.8 1.7e-05 25.0 0.0 2.1 3 0 0 3 3 3 1 PAS fold OKR_DC_1_N PF03709.15 gi|55377243|ref|YP_135093.1| - 7.2e-06 26.2 0.0 1.2e-05 25.5 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_8 PF13188.7 gi|55377243|ref|YP_135093.1| - 2.6e-05 24.1 0.0 6.2e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|55377243|ref|YP_135093.1| - 6.8e-05 23.1 0.0 0.0003 21.0 0.0 2.0 1 1 1 2 2 2 1 PAS domain MLTR_LBD PF17765.1 gi|55377243|ref|YP_135093.1| - 0.048 13.8 2.5 0.073 13.2 0.2 2.3 2 1 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain LPD1 PF18796.1 gi|55377243|ref|YP_135093.1| - 0.067 13.3 0.3 0.17 12.0 0.3 1.6 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 1 Iso_dh PF00180.20 gi|55377244|ref|YP_135094.1| - 1.4e-93 313.8 0.1 1.6e-93 313.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoRC PF00455.22 gi|55377245|ref|YP_135095.1| - 5.3e-53 179.2 0.1 7.1e-53 178.8 0.1 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|55377245|ref|YP_135095.1| - 2.3e-16 59.3 0.1 3.9e-16 58.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|55377245|ref|YP_135095.1| - 3e-08 33.5 0.2 5.3e-08 32.7 0.2 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|55377245|ref|YP_135095.1| - 1.8e-06 27.7 0.2 6.7e-06 25.9 0.2 2.0 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|55377245|ref|YP_135095.1| - 4e-06 26.6 0.0 6.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|55377245|ref|YP_135095.1| - 1.4e-05 24.6 0.0 4.5e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|55377245|ref|YP_135095.1| - 7.3e-05 22.8 1.2 0.00019 21.4 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|55377245|ref|YP_135095.1| - 9.1e-05 22.3 0.1 0.00017 21.5 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|55377245|ref|YP_135095.1| - 0.00053 19.5 0.2 0.001 18.6 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|55377245|ref|YP_135095.1| - 0.00064 19.5 0.1 0.0014 18.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF742 PF05331.11 gi|55377245|ref|YP_135095.1| - 0.0024 17.7 0.0 0.0078 16.0 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF742) FaeA PF04703.12 gi|55377245|ref|YP_135095.1| - 0.006 16.9 0.1 0.094 13.1 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein TrmB PF01978.19 gi|55377245|ref|YP_135095.1| - 0.0078 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|55377245|ref|YP_135095.1| - 0.0088 16.1 0.1 0.0088 16.1 0.1 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|55377245|ref|YP_135095.1| - 0.013 16.2 0.0 0.037 14.7 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_38 PF13936.6 gi|55377245|ref|YP_135095.1| - 0.036 13.8 0.1 0.08 12.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|55377245|ref|YP_135095.1| - 0.05 13.5 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor Mga PF05043.13 gi|55377245|ref|YP_135095.1| - 0.054 14.1 0.0 0.1 13.2 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|55377245|ref|YP_135095.1| - 0.057 13.7 0.1 0.12 12.6 0.1 1.5 1 0 0 1 1 1 0 Transposase HTH_29 PF13551.6 gi|55377245|ref|YP_135095.1| - 0.059 13.4 0.3 0.15 12.1 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|55377245|ref|YP_135095.1| - 0.059 13.6 0.0 0.16 12.2 0.0 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|55377245|ref|YP_135095.1| - 0.069 12.7 0.2 0.18 11.4 0.2 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 DDRGK PF09756.9 gi|55377245|ref|YP_135095.1| - 0.071 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain HTH_Mga PF08280.11 gi|55377245|ref|YP_135095.1| - 0.097 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Put_DNA-bind_N PF06971.13 gi|55377245|ref|YP_135095.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_36 PF13730.6 gi|55377245|ref|YP_135095.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|55377245|ref|YP_135095.1| - 0.12 12.7 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PfkB PF00294.24 gi|55377246|ref|YP_135096.1| - 2.5e-40 138.7 3.2 3.3e-40 138.3 3.2 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|55377246|ref|YP_135096.1| - 0.064 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|55377247|ref|YP_135097.1| - 0.014 14.7 3.6 0.022 14.0 3.6 1.2 1 0 0 1 1 1 0 pfkB family carbohydrate kinase DeoC PF01791.9 gi|55377248|ref|YP_135098.1| - 9.5e-35 120.3 0.0 1.1e-34 120.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase VAPB_antitox PF02697.14 gi|55377249|ref|YP_135099.1| - 0.033 15.0 0.2 0.034 14.9 0.2 1.1 1 0 0 1 1 1 0 Putative antitoxin FIST PF08495.10 gi|55377251|ref|YP_135101.1| - 1.2e-31 110.1 0.5 2.1e-30 106.0 0.2 2.3 2 1 0 2 2 2 1 FIST N domain FIST_C PF10442.9 gi|55377251|ref|YP_135101.1| - 1e-21 77.2 0.1 1e-20 74.0 0.0 2.2 2 0 0 2 2 2 1 FIST C domain OsmC PF02566.19 gi|55377252|ref|YP_135102.1| - 4.9e-13 49.4 0.0 7.2e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein UbiA PF01040.18 gi|55377254|ref|YP_135104.1| - 1.7e-12 47.2 26.2 9.1e-12 44.8 23.8 2.2 1 1 1 2 2 2 2 UbiA prenyltransferase family DnaJ PF00226.31 gi|55377255|ref|YP_135105.1| - 7.1e-19 67.7 0.0 1.1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DUF1684 PF07920.11 gi|55377256|ref|YP_135106.1| - 7e-51 172.2 0.1 1.2e-50 171.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) CPBP PF02517.16 gi|55377257|ref|YP_135107.1| - 1.6e-14 54.0 0.1 1.6e-14 54.0 0.1 2.3 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease PAS_9 PF13426.7 gi|55377258|ref|YP_135108.1| - 6e-23 81.1 0.0 6e-11 42.5 0.0 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.24 gi|55377258|ref|YP_135108.1| - 2.6e-22 79.1 0.0 5.6e-22 78.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|55377258|ref|YP_135108.1| - 1.1e-19 70.5 0.1 1.3e-09 38.0 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|55377258|ref|YP_135108.1| - 2.7e-14 53.3 2.0 2.5e-08 34.2 0.2 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|55377258|ref|YP_135108.1| - 5.7e-08 32.6 0.1 0.012 15.6 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.12 gi|55377258|ref|YP_135108.1| - 6.8e-07 29.5 3.1 0.0002 21.6 0.0 3.1 3 1 0 3 3 3 2 PAS fold GAF PF01590.26 gi|55377258|ref|YP_135108.1| - 0.00013 22.6 0.0 0.00054 20.6 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|55377258|ref|YP_135108.1| - 0.0025 17.9 0.0 2.4 8.4 0.0 3.1 2 2 0 2 2 2 2 PAS fold GAF_3 PF13492.6 gi|55377258|ref|YP_135108.1| - 0.015 15.7 0.0 0.097 13.0 0.0 2.2 2 0 0 2 2 2 0 GAF domain OKR_DC_1_N PF03709.15 gi|55377258|ref|YP_135108.1| - 0.074 13.3 0.0 0.23 11.7 0.0 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DctM PF06808.12 gi|55377259|ref|YP_135109.1| - 1.4e-59 202.0 40.5 2.6e-59 201.1 40.5 1.4 1 0 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component NMT1_3 PF16868.5 gi|55377260|ref|YP_135110.1| - 1e-28 100.6 0.0 1.2e-28 100.4 0.0 1.0 1 0 0 1 1 1 1 NMT1-like family TAT_signal PF10518.9 gi|55377260|ref|YP_135110.1| - 0.004 16.9 1.6 0.012 15.5 1.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DAO PF01266.24 gi|55377261|ref|YP_135111.1| - 7.3e-10 38.9 0.1 0.0012 18.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|55377261|ref|YP_135111.1| - 1.2e-09 37.9 0.3 0.0001 21.7 0.2 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|55377261|ref|YP_135111.1| - 4.2e-09 36.1 0.3 8.2e-05 22.0 0.4 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|55377261|ref|YP_135111.1| - 1.4e-06 27.3 0.9 0.0011 17.8 1.5 2.2 2 0 0 2 2 2 2 HI0933-like protein Trp_halogenase PF04820.14 gi|55377261|ref|YP_135111.1| - 2.1e-05 23.6 1.4 0.017 14.0 0.0 2.1 1 1 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 gi|55377261|ref|YP_135111.1| - 4e-05 22.9 1.6 0.0013 17.9 1.0 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|55377261|ref|YP_135111.1| - 9.9e-05 21.8 3.9 0.00018 21.0 3.9 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|55377261|ref|YP_135111.1| - 0.0001 22.5 0.2 0.00032 20.9 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|55377261|ref|YP_135111.1| - 0.00016 21.7 1.3 0.064 13.2 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|55377261|ref|YP_135111.1| - 0.00037 19.7 1.7 0.00037 19.7 1.7 1.7 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|55377261|ref|YP_135111.1| - 0.001 18.2 0.1 0.24 10.4 0.2 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|55377261|ref|YP_135111.1| - 0.003 16.8 0.6 0.016 14.4 0.7 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|55377261|ref|YP_135111.1| - 0.053 12.8 0.2 0.086 12.1 0.2 1.3 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|55377261|ref|YP_135111.1| - 0.079 12.2 0.5 0.13 11.6 0.5 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|55377261|ref|YP_135111.1| - 0.093 13.3 0.1 0.59 10.7 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Response_reg PF00072.24 gi|55377262|ref|YP_135112.1| - 1.9e-14 53.8 0.6 3.2e-14 53.0 0.1 1.6 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.10 gi|55377262|ref|YP_135112.1| - 0.00045 20.5 7.2 0.00045 20.5 7.2 1.9 2 0 0 2 2 2 1 HalX domain 2-Hacid_dh_C PF02826.19 gi|55377263|ref|YP_135113.1| - 4.8e-50 169.4 0.0 7e-50 168.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|55377263|ref|YP_135113.1| - 4.8e-09 36.0 0.0 6.4e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|55377263|ref|YP_135113.1| - 0.0084 16.3 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4440 PF14534.6 gi|55377263|ref|YP_135113.1| - 0.035 14.5 0.1 0.28 11.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4440) F420_oxidored PF03807.17 gi|55377263|ref|YP_135113.1| - 0.046 14.3 0.0 0.09 13.4 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF3382 PF11862.8 gi|55377264|ref|YP_135114.1| - 1.6 9.0 9.6 0.068 13.4 2.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) Semialdhyde_dh PF01118.24 gi|55377265|ref|YP_135115.1| - 5.8e-33 113.9 0.0 1.4e-32 112.7 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|55377265|ref|YP_135115.1| - 8.7e-31 107.4 0.0 1.2e-30 106.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DXP_reductoisom PF02670.16 gi|55377265|ref|YP_135115.1| - 0.0008 20.1 0.0 0.0016 19.2 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.20 gi|55377265|ref|YP_135115.1| - 0.00082 19.5 0.0 0.0019 18.3 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus AAA_12 PF13087.6 gi|55377267|ref|YP_135117.1| - 3.8e-44 150.7 0.0 7.6e-44 149.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|55377267|ref|YP_135117.1| - 3.9e-33 115.3 0.2 2.9e-17 63.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|55377267|ref|YP_135117.1| - 1.5e-15 57.4 0.2 3.5e-15 56.2 0.2 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|55377267|ref|YP_135117.1| - 2.4e-09 37.7 0.1 1.7e-08 34.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|55377267|ref|YP_135117.1| - 1.2e-06 28.5 0.2 0.056 13.2 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|55377267|ref|YP_135117.1| - 0.00044 20.3 0.0 0.0011 19.0 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|55377267|ref|YP_135117.1| - 0.0009 19.1 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_25 PF13481.6 gi|55377267|ref|YP_135117.1| - 0.0038 16.8 0.6 0.02 14.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|55377267|ref|YP_135117.1| - 0.013 15.8 0.0 0.034 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55377267|ref|YP_135117.1| - 0.013 15.9 0.0 0.049 14.0 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain DUF2075 PF09848.9 gi|55377267|ref|YP_135117.1| - 0.014 14.7 0.1 0.097 11.9 0.0 2.3 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.6 gi|55377267|ref|YP_135117.1| - 0.039 13.8 0.6 0.19 11.6 0.2 2.4 2 1 0 2 2 2 0 UvrD-like helicase C-terminal domain AAA_24 PF13479.6 gi|55377267|ref|YP_135117.1| - 0.044 13.5 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|55377267|ref|YP_135117.1| - 0.047 13.1 0.0 0.56 9.6 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA PF00004.29 gi|55377267|ref|YP_135117.1| - 0.083 13.3 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|55377267|ref|YP_135117.1| - 0.11 12.6 0.0 0.33 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|55377267|ref|YP_135117.1| - 0.17 11.6 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Omp28 PF11551.8 gi|55377267|ref|YP_135117.1| - 0.2 11.5 0.0 16 5.3 0.0 2.4 2 0 0 2 2 2 0 Outer membrane protein Omp28 PIF1 PF05970.14 gi|55377267|ref|YP_135117.1| - 0.2 10.8 0.0 0.81 8.8 0.0 1.9 2 0 0 2 2 2 0 PIF1-like helicase IPT PF01745.16 gi|55377267|ref|YP_135117.1| - 0.23 10.8 0.0 0.36 10.2 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase DDE_Tnp_IS240 PF13610.6 gi|55377268|ref|YP_135118.1| - 1.3e-14 54.6 0.1 1.9e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|55377268|ref|YP_135118.1| - 0.00043 20.5 0.1 0.0007 19.8 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|55377268|ref|YP_135118.1| - 0.019 14.5 0.3 0.019 14.5 0.3 2.0 2 1 0 2 2 2 0 Transposase IS66 family DDE_3 PF13358.6 gi|55377268|ref|YP_135118.1| - 0.11 12.2 0.0 0.33 10.7 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.6 gi|55377268|ref|YP_135118.1| - 0.13 12.4 0.0 0.73 10.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Peripla_BP_6 PF13458.6 gi|55377269|ref|YP_135119.1| - 7.2e-58 196.9 8.8 9.2e-58 196.5 8.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|55377269|ref|YP_135119.1| - 1.1e-18 67.5 1.8 2e-18 66.5 1.8 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|55377269|ref|YP_135119.1| - 2.8e-07 30.0 0.0 5.4e-07 29.0 0.0 1.4 2 0 0 2 2 2 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|55377269|ref|YP_135119.1| - 0.37 10.7 4.0 1.4 8.9 4.0 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HAMP PF00672.25 gi|55377270|ref|YP_135120.1| - 9.1e-09 35.6 6.9 1.1e-05 25.7 0.1 3.5 3 0 0 3 3 3 2 HAMP domain DUF948 PF06103.11 gi|55377270|ref|YP_135120.1| - 0.00046 20.4 8.7 0.07 13.4 1.7 4.1 2 1 1 3 3 3 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|55377270|ref|YP_135120.1| - 0.038 14.0 10.0 0.44 10.6 1.3 3.7 2 1 0 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|55377270|ref|YP_135120.1| - 0.046 13.7 0.6 0.046 13.7 0.6 4.0 2 1 3 5 5 5 0 Laminin Domain II CorA PF01544.18 gi|55377270|ref|YP_135120.1| - 0.17 11.2 12.8 0.26 10.6 2.8 2.8 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein CENP-K PF11802.8 gi|55377270|ref|YP_135120.1| - 0.18 11.3 4.9 0.041 13.5 0.6 1.9 1 1 1 2 2 2 0 Centromere-associated protein K Dynamin_M PF01031.20 gi|55377270|ref|YP_135120.1| - 0.19 10.9 3.3 0.22 10.7 2.2 1.6 1 1 0 1 1 1 0 Dynamin central region Mce4_CUP1 PF11887.8 gi|55377270|ref|YP_135120.1| - 0.2 11.1 5.4 0.97 8.8 4.5 2.2 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative WXG100 PF06013.12 gi|55377270|ref|YP_135120.1| - 0.33 11.2 13.4 17 5.7 0.0 5.1 4 0 0 4 4 4 0 Proteins of 100 residues with WXG Sec34 PF04136.15 gi|55377270|ref|YP_135120.1| - 0.97 9.3 8.0 6.6 6.6 0.3 3.0 2 1 1 3 3 3 0 Sec34-like family Fzo_mitofusin PF04799.13 gi|55377270|ref|YP_135120.1| - 1.1 8.8 7.7 3 7.4 0.4 3.2 3 1 1 4 4 4 0 fzo-like conserved region LUC7 PF03194.15 gi|55377270|ref|YP_135120.1| - 2.5 7.7 10.3 14 5.3 0.1 2.8 1 1 0 2 2 2 0 LUC7 N_terminus IFT57 PF10498.9 gi|55377270|ref|YP_135120.1| - 2.9 6.8 14.1 1.8e+02 0.9 14.2 2.7 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 YtxH PF12732.7 gi|55377270|ref|YP_135120.1| - 6.7 7.3 19.2 26 5.4 6.9 4.1 2 1 1 3 3 3 0 YtxH-like protein DUF4407 PF14362.6 gi|55377271|ref|YP_135121.1| - 0.013 14.9 3.2 0.013 14.8 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3018 PF11455.8 gi|55377271|ref|YP_135121.1| - 0.054 13.4 1.1 0.074 13.0 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3018) Glycophorin_A PF01102.18 gi|55377272|ref|YP_135122.1| - 0.13 12.5 1.8 0.14 12.5 1.8 1.0 1 0 0 1 1 1 0 Glycophorin A UPF0154 PF03672.13 gi|55377272|ref|YP_135122.1| - 0.15 12.1 0.6 0.15 12.1 0.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) Phage_integrase PF00589.22 gi|55377274|ref|YP_135124.1| - 2.5e-17 63.2 0.0 4.2e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55377274|ref|YP_135124.1| - 1.1e-08 35.2 0.1 3e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|55377274|ref|YP_135124.1| - 1e-05 25.9 0.0 5.2e-05 23.6 0.0 2.1 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|55377274|ref|YP_135124.1| - 0.057 13.3 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 Archaeal phage integrase Gluconate_2-dh3 PF13618.6 gi|55377274|ref|YP_135124.1| - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 2 0 0 2 2 2 0 Gluconate 2-dehydrogenase subunit 3 HTH_10 PF04967.12 gi|55377275|ref|YP_135125.1| - 1.5e-19 69.5 0.1 2.7e-19 68.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_psq PF05225.16 gi|55377275|ref|YP_135125.1| - 0.00079 19.1 0.0 0.0018 18.0 0.0 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_24 PF13412.6 gi|55377275|ref|YP_135125.1| - 0.0026 17.3 0.0 0.0072 15.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55377275|ref|YP_135125.1| - 0.027 14.5 0.0 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|55377275|ref|YP_135125.1| - 0.029 14.2 0.1 0.062 13.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55377275|ref|YP_135125.1| - 0.035 14.0 0.1 0.1 12.5 0.1 1.8 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|55377275|ref|YP_135125.1| - 0.073 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family IF2_N PF04760.15 gi|55377275|ref|YP_135125.1| - 0.076 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_Tnp_1_2 PF13022.6 gi|55377275|ref|YP_135125.1| - 0.082 13.1 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Sigma70_r4_2 PF08281.12 gi|55377275|ref|YP_135125.1| - 0.11 12.2 0.2 1.5 8.6 0.2 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 BPD_transp_1 PF00528.22 gi|55377276|ref|YP_135126.1| - 5.3e-17 62.1 7.7 5.3e-17 62.1 7.7 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|55377277|ref|YP_135127.1| - 6.6e-34 117.4 0.0 9.2e-34 116.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377277|ref|YP_135127.1| - 3.6e-15 56.6 0.1 4.5e-07 30.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377277|ref|YP_135127.1| - 1.5e-08 34.3 0.0 1.4e-07 31.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55377277|ref|YP_135127.1| - 1.4e-05 24.7 0.0 3.2e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55377277|ref|YP_135127.1| - 0.00026 21.4 0.7 0.00046 20.6 0.7 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|55377277|ref|YP_135127.1| - 0.00028 19.8 0.5 0.13 11.0 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|55377277|ref|YP_135127.1| - 0.00046 20.1 0.0 0.00075 19.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|55377277|ref|YP_135127.1| - 0.00052 20.3 0.1 0.001 19.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55377277|ref|YP_135127.1| - 0.00087 19.1 0.1 0.0014 18.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|55377277|ref|YP_135127.1| - 0.0018 18.8 0.0 0.0024 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|55377277|ref|YP_135127.1| - 0.0048 16.6 0.0 0.027 14.2 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|55377277|ref|YP_135127.1| - 0.0054 17.3 0.0 0.012 16.1 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|55377277|ref|YP_135127.1| - 0.0096 16.3 0.1 0.055 13.9 0.0 2.4 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|55377277|ref|YP_135127.1| - 0.015 15.5 0.0 0.027 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|55377277|ref|YP_135127.1| - 0.023 14.3 0.5 0.088 12.4 0.5 2.2 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|55377277|ref|YP_135127.1| - 0.037 13.6 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TK PF00265.18 gi|55377277|ref|YP_135127.1| - 0.046 13.6 0.0 5.5 6.8 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase ATPase_2 PF01637.18 gi|55377277|ref|YP_135127.1| - 0.05 13.5 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|55377277|ref|YP_135127.1| - 0.054 13.5 0.1 0.13 12.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|55377277|ref|YP_135127.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain APS_kinase PF01583.20 gi|55377277|ref|YP_135127.1| - 0.14 12.1 0.1 0.4 10.6 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|55377277|ref|YP_135127.1| - 0.18 11.7 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain SbcCD_C PF13558.6 gi|55377277|ref|YP_135127.1| - 0.19 12.0 1.3 1.6 9.0 0.3 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|55377277|ref|YP_135127.1| - 0.19 11.4 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|55377277|ref|YP_135127.1| - 0.23 10.2 0.1 1 8.1 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|55377278|ref|YP_135128.1| - 5.2e-21 75.2 6.4 5.2e-21 75.2 6.4 1.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.8 gi|55377278|ref|YP_135128.1| - 0.99 8.9 4.9 0.41 10.1 1.6 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) SBP_bac_3 PF00497.20 gi|55377279|ref|YP_135129.1| - 2.1e-56 190.9 0.0 2.4e-56 190.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|55377279|ref|YP_135129.1| - 1.5e-07 31.6 0.1 8.5e-07 29.2 0.0 2.3 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site Aminotran_3 PF00202.21 gi|55377280|ref|YP_135130.1| - 4.2e-81 272.7 0.0 1.6e-80 270.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Arginase PF00491.21 gi|55377281|ref|YP_135131.1| - 1e-72 245.0 3.4 1.2e-72 244.8 3.4 1.0 1 0 0 1 1 1 1 Arginase family LPD26 PF18842.1 gi|55377281|ref|YP_135131.1| - 0.39 10.7 2.6 1.4 8.9 0.2 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 26 ELFV_dehydrog PF00208.21 gi|55377282|ref|YP_135132.1| - 7.8e-71 238.6 0.4 1.3e-70 237.9 0.4 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|55377282|ref|YP_135132.1| - 6.4e-54 181.3 0.0 1.1e-53 180.6 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|55377282|ref|YP_135132.1| - 0.00093 18.6 0.1 0.0019 17.6 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|55377282|ref|YP_135132.1| - 0.063 10.8 0.0 0.098 10.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase ThiF PF00899.21 gi|55377282|ref|YP_135132.1| - 0.21 10.9 0.3 0.41 10.0 0.3 1.4 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.21 gi|55377282|ref|YP_135132.1| - 0.23 10.7 2.4 0.2 10.9 0.4 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain IclR PF01614.18 gi|55377283|ref|YP_135133.1| - 1.1e-34 119.0 0.4 2.5e-34 117.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55377283|ref|YP_135133.1| - 1.5e-10 40.7 0.0 5.6e-10 38.9 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55377283|ref|YP_135133.1| - 8.6e-08 31.6 0.1 5.3e-07 29.1 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55377283|ref|YP_135133.1| - 1.3e-06 28.2 0.0 2.4e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|55377283|ref|YP_135133.1| - 0.00059 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|55377283|ref|YP_135133.1| - 0.00072 19.4 0.1 0.0029 17.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|55377283|ref|YP_135133.1| - 0.004 17.0 0.2 0.01 15.6 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|55377283|ref|YP_135133.1| - 0.004 17.0 0.1 0.026 14.4 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_45 PF14947.6 gi|55377283|ref|YP_135133.1| - 0.0056 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|55377283|ref|YP_135133.1| - 0.0084 16.2 0.1 0.035 14.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|55377283|ref|YP_135133.1| - 0.017 15.1 0.2 0.032 14.2 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.19 gi|55377283|ref|YP_135133.1| - 0.032 14.1 0.0 0.092 12.6 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.10 gi|55377283|ref|YP_135133.1| - 0.041 13.9 0.0 0.088 12.9 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator PadR PF03551.14 gi|55377283|ref|YP_135133.1| - 0.051 13.5 0.0 0.16 12.0 0.0 1.9 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF1803 PF08820.10 gi|55377283|ref|YP_135133.1| - 0.057 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) HTH_34 PF13601.6 gi|55377283|ref|YP_135133.1| - 0.067 13.4 0.0 0.2 11.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.11 gi|55377283|ref|YP_135133.1| - 0.15 12.1 0.5 0.63 10.1 0.0 2.1 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein APG17 PF04108.12 gi|55377284|ref|YP_135134.1| - 0.022 13.9 0.9 0.17 10.9 0.5 2.1 2 0 0 2 2 2 0 Autophagy protein Apg17 Cytochrom_B562 PF07361.11 gi|55377284|ref|YP_135134.1| - 0.13 12.9 0.1 0.38 11.4 0.0 1.7 2 0 0 2 2 2 0 Cytochrome b562 Copper-bind PF00127.20 gi|55377285|ref|YP_135135.1| - 2.5e-19 69.5 0.4 5e-19 68.6 0.4 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|55377285|ref|YP_135135.1| - 4.3e-06 26.8 1.1 8.7e-05 22.6 1.1 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|55377285|ref|YP_135135.1| - 0.12 12.2 5.7 0.22 11.4 5.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence nos_propeller PF18764.1 gi|55377286|ref|YP_135136.1| - 1.1e-29 102.1 0.3 7.1e-29 99.5 0.2 2.3 2 0 0 2 2 2 1 Nitrous oxide reductase propeller repeat nos_propeller_2 PF18793.1 gi|55377286|ref|YP_135136.1| - 1.8e-29 101.9 0.2 5.6e-29 100.3 0.2 1.9 1 0 0 1 1 1 1 Nitrous oxide reductase propeller repeat 2 TAT_signal PF10518.9 gi|55377286|ref|YP_135136.1| - 3.4e-05 23.5 4.9 5.2e-05 22.9 4.9 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence COX2 PF00116.20 gi|55377286|ref|YP_135136.1| - 5e-05 23.2 0.0 0.0001 22.2 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|55377286|ref|YP_135136.1| - 0.00019 21.5 0.0 0.00043 20.4 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain Glyco_transf_36 PF06165.11 gi|55377286|ref|YP_135136.1| - 0.056 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 36 NosD PF05048.13 gi|55377288|ref|YP_135138.1| - 2e-56 191.0 21.8 4.8e-53 179.9 19.7 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|55377288|ref|YP_135138.1| - 4e-26 91.8 22.3 8.7e-17 61.4 4.4 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|55377288|ref|YP_135138.1| - 6.3e-06 25.7 13.4 0.0065 15.8 5.8 2.4 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) ABC_tran PF00005.27 gi|55377289|ref|YP_135139.1| - 7.2e-29 101.0 0.0 1.5e-28 100.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|55377289|ref|YP_135139.1| - 2.2e-11 44.1 0.4 1.4e-06 28.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|55377289|ref|YP_135139.1| - 5.6e-05 23.8 0.0 0.0001 22.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_13 PF13166.6 gi|55377289|ref|YP_135139.1| - 0.054 12.2 0.0 0.074 11.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|55377289|ref|YP_135139.1| - 0.076 12.7 0.0 0.71 9.5 0.0 1.9 1 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.6 gi|55377289|ref|YP_135139.1| - 0.22 12.0 0.1 0.33 11.4 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|55377289|ref|YP_135139.1| - 0.24 8.9 0.4 0.32 8.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC2_membrane_2 PF12679.7 gi|55377290|ref|YP_135140.1| - 2e-22 79.8 23.9 1.3e-20 73.8 23.9 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|55377290|ref|YP_135140.1| - 4 6.5 8.1 2.4 7.2 6.7 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein HisG PF01634.18 gi|55377291|ref|YP_135141.1| - 0.015 15.3 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 ATP phosphoribosyltransferase Spc7 PF08317.11 gi|55377292|ref|YP_135142.1| - 2.5e-06 26.6 4.8 4.3e-06 25.8 4.8 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein NPV_P10 PF05531.12 gi|55377292|ref|YP_135142.1| - 0.0003 21.2 3.6 0.67 10.5 0.9 3.5 2 1 1 3 3 3 1 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 gi|55377292|ref|YP_135142.1| - 0.00038 20.5 0.8 0.00098 19.2 0.7 1.8 1 1 0 1 1 1 1 Laminin Domain II DUF4200 PF13863.6 gi|55377292|ref|YP_135142.1| - 0.0005 20.4 1.9 0.054 13.9 2.5 2.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4200) Fib_alpha PF08702.10 gi|55377292|ref|YP_135142.1| - 0.001 19.3 1.2 0.0032 17.7 0.2 2.0 2 0 0 2 2 2 1 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|55377292|ref|YP_135142.1| - 0.0025 17.9 8.7 0.015 15.3 8.3 2.1 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ZapB PF06005.12 gi|55377292|ref|YP_135142.1| - 0.0037 17.7 4.6 0.0072 16.7 2.5 2.5 1 1 1 2 2 2 1 Cell division protein ZapB Filament PF00038.21 gi|55377292|ref|YP_135142.1| - 0.0045 16.6 5.7 0.011 15.3 5.5 1.7 1 1 0 1 1 1 1 Intermediate filament protein Baculo_PEP_C PF04513.12 gi|55377292|ref|YP_135142.1| - 0.0046 17.0 0.5 0.24 11.4 0.2 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin-6_N PF09177.11 gi|55377292|ref|YP_135142.1| - 0.0048 17.4 6.3 0.0051 17.3 3.1 2.4 1 1 1 2 2 2 1 Syntaxin 6, N-terminal DUF812 PF05667.11 gi|55377292|ref|YP_135142.1| - 0.005 15.8 5.4 0.0065 15.4 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ATG16 PF08614.11 gi|55377292|ref|YP_135142.1| - 0.0056 16.9 6.3 0.013 15.7 5.5 1.9 1 1 1 2 2 2 1 Autophagy protein 16 (ATG16) Fez1 PF06818.15 gi|55377292|ref|YP_135142.1| - 0.0065 16.9 5.8 0.023 15.1 4.1 2.0 1 1 1 2 2 2 1 Fez1 BLOC1_2 PF10046.9 gi|55377292|ref|YP_135142.1| - 0.0079 16.5 6.4 0.054 13.8 2.3 2.8 1 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3450 PF11932.8 gi|55377292|ref|YP_135142.1| - 0.0089 15.4 3.2 0.0089 15.4 3.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) DUF4988 PF16378.5 gi|55377292|ref|YP_135142.1| - 0.01 15.6 1.7 0.08 12.6 0.5 2.8 2 1 1 3 3 2 1 Domain of unknown function DUF3584 PF12128.8 gi|55377292|ref|YP_135142.1| - 0.01 13.4 6.7 0.014 13.0 6.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1664 PF07889.12 gi|55377292|ref|YP_135142.1| - 0.012 15.6 2.9 0.086 12.9 0.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Tropomyosin_1 PF12718.7 gi|55377292|ref|YP_135142.1| - 0.015 15.4 3.2 0.015 15.4 3.2 2.1 1 1 0 1 1 1 0 Tropomyosin like EzrA PF06160.12 gi|55377292|ref|YP_135142.1| - 0.015 13.5 3.8 0.029 12.6 3.8 1.4 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Spectrin PF00435.21 gi|55377292|ref|YP_135142.1| - 0.016 15.7 1.2 0.016 15.7 1.2 2.3 1 1 1 2 2 2 0 Spectrin repeat FPP PF05911.11 gi|55377292|ref|YP_135142.1| - 0.017 13.4 4.0 0.022 13.0 4.0 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil COG2 PF06148.11 gi|55377292|ref|YP_135142.1| - 0.019 15.1 3.7 0.3 11.1 2.8 2.5 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FliJ PF02050.16 gi|55377292|ref|YP_135142.1| - 0.021 15.0 1.2 0.12 12.6 0.2 2.2 1 1 1 2 2 2 0 Flagellar FliJ protein DUF1515 PF07439.11 gi|55377292|ref|YP_135142.1| - 0.024 14.6 1.6 0.082 13.0 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Sec34 PF04136.15 gi|55377292|ref|YP_135142.1| - 0.025 14.5 1.6 0.15 11.9 0.8 2.1 1 1 1 2 2 2 0 Sec34-like family DUF3829 PF12889.7 gi|55377292|ref|YP_135142.1| - 0.027 14.0 0.5 0.24 10.8 0.1 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF3829) PI3K_P85_iSH2 PF16454.5 gi|55377292|ref|YP_135142.1| - 0.027 14.1 1.0 49 3.5 0.0 2.5 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HAUS-augmin3 PF14932.6 gi|55377292|ref|YP_135142.1| - 0.028 14.0 0.4 0.049 13.2 0.4 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 End3 PF12761.7 gi|55377292|ref|YP_135142.1| - 0.032 14.4 3.6 0.099 12.8 1.3 2.1 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 AAA_13 PF13166.6 gi|55377292|ref|YP_135142.1| - 0.034 12.8 2.3 0.047 12.3 2.3 1.3 1 0 0 1 1 1 0 AAA domain TBCC_N PF16752.5 gi|55377292|ref|YP_135142.1| - 0.035 14.5 5.8 2 8.9 0.3 2.6 1 1 2 3 3 3 0 Tubulin-specific chaperone C N-terminal domain DUF2353 PF09789.9 gi|55377292|ref|YP_135142.1| - 0.038 13.4 4.1 0.073 12.4 3.6 1.7 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Tropomyosin PF00261.20 gi|55377292|ref|YP_135142.1| - 0.048 13.0 7.2 0.041 13.3 5.4 1.7 1 1 0 1 1 1 0 Tropomyosin PspA_IM30 PF04012.12 gi|55377292|ref|YP_135142.1| - 0.049 13.2 3.7 0.43 10.1 3.1 2.4 1 1 0 1 1 1 0 PspA/IM30 family Flagellin_N PF00669.20 gi|55377292|ref|YP_135142.1| - 0.052 13.7 0.1 0.13 12.4 0.1 1.6 1 1 0 1 1 1 0 Bacterial flagellin N-terminal helical region Syntaxin PF00804.25 gi|55377292|ref|YP_135142.1| - 0.052 13.2 1.5 0.058 13.1 0.3 1.6 2 0 0 2 2 1 0 Syntaxin FlaC_arch PF05377.11 gi|55377292|ref|YP_135142.1| - 0.059 13.8 8.2 0.12 12.8 0.4 3.8 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) STAT_alpha PF01017.20 gi|55377292|ref|YP_135142.1| - 0.06 13.2 0.1 0.091 12.7 0.1 1.3 1 0 0 1 1 1 0 STAT protein, all-alpha domain Prefoldin PF02996.17 gi|55377292|ref|YP_135142.1| - 0.063 13.2 5.3 5.8 6.9 0.5 3.6 1 1 4 5 5 5 0 Prefoldin subunit Lebercilin PF15619.6 gi|55377292|ref|YP_135142.1| - 0.068 12.8 1.5 0.19 11.4 1.3 1.7 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease HBM PF16591.5 gi|55377292|ref|YP_135142.1| - 0.074 12.5 3.8 3.9 6.8 0.2 2.8 1 1 1 2 2 2 0 Helical bimodular sensor domain DUF745 PF05335.13 gi|55377292|ref|YP_135142.1| - 0.074 12.8 0.4 0.2 11.4 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF745) TPR_MLP1_2 PF07926.12 gi|55377292|ref|YP_135142.1| - 0.08 13.0 6.0 0.26 11.3 5.2 2.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein COG6 PF06419.11 gi|55377292|ref|YP_135142.1| - 0.082 11.1 0.8 0.17 10.1 0.1 1.8 2 1 0 2 2 1 0 Conserved oligomeric complex COG6 Acyl-CoA_dh_2 PF08028.11 gi|55377292|ref|YP_135142.1| - 0.086 13.1 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain DUF4201 PF13870.6 gi|55377292|ref|YP_135142.1| - 0.089 12.5 0.1 0.19 11.5 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4201) DUF5082 PF16888.5 gi|55377292|ref|YP_135142.1| - 0.091 13.0 7.6 2.1 8.6 0.9 3.2 2 1 1 3 3 2 0 Domain of unknown function (DUF5082) Atg14 PF10186.9 gi|55377292|ref|YP_135142.1| - 0.094 11.8 1.3 0.46 9.5 0.6 1.9 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 ISG65-75 PF11727.8 gi|55377292|ref|YP_135142.1| - 0.097 11.9 0.9 0.24 10.6 0.2 1.8 1 1 1 2 2 2 0 Invariant surface glycoprotein ABC_tran_CTD PF16326.5 gi|55377292|ref|YP_135142.1| - 0.11 12.8 11.9 0.29 11.4 0.6 3.4 1 1 2 3 3 3 0 ABC transporter C-terminal domain Cob_adeno_trans PF01923.18 gi|55377292|ref|YP_135142.1| - 0.11 12.6 3.9 0.37 10.9 1.0 2.6 1 1 2 3 3 3 0 Cobalamin adenosyltransferase FH2 PF02181.23 gi|55377292|ref|YP_135142.1| - 0.12 11.4 2.4 1.6 7.7 0.1 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF4349 PF14257.6 gi|55377292|ref|YP_135142.1| - 0.12 11.8 9.0 1 8.8 0.1 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) DUF724 PF05266.14 gi|55377292|ref|YP_135142.1| - 0.12 12.2 1.1 0.22 11.3 0.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF724) HrpB7 PF09486.10 gi|55377292|ref|YP_135142.1| - 0.13 12.6 6.8 1.5 9.2 5.7 2.6 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Cytochrom_B562 PF07361.11 gi|55377292|ref|YP_135142.1| - 0.13 12.9 3.1 0.38 11.4 1.8 2.2 1 1 1 2 2 2 0 Cytochrome b562 LPP PF04728.13 gi|55377292|ref|YP_135142.1| - 0.15 12.5 0.5 0.15 12.5 0.5 4.1 1 1 3 4 4 3 0 Lipoprotein leucine-zipper MscS_porin PF12795.7 gi|55377292|ref|YP_135142.1| - 0.18 11.3 2.3 0.36 10.3 2.1 1.5 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain APG6_N PF17675.1 gi|55377292|ref|YP_135142.1| - 0.2 12.1 10.5 2.2 8.8 10.1 2.5 1 1 0 1 1 1 0 Apg6 coiled-coil region AAA_23 PF13476.6 gi|55377292|ref|YP_135142.1| - 0.21 12.1 3.1 0.32 11.5 3.1 1.4 1 0 0 1 1 1 0 AAA domain FAM184 PF15665.5 gi|55377292|ref|YP_135142.1| - 0.21 11.3 5.4 0.28 10.9 4.2 1.5 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B Spc29 PF17082.5 gi|55377292|ref|YP_135142.1| - 0.23 11.3 2.9 1.7 8.5 0.4 2.4 1 1 2 3 3 3 0 Spindle Pole Component 29 TolA_bind_tri PF16331.5 gi|55377292|ref|YP_135142.1| - 0.23 11.6 3.9 2 8.5 0.2 2.8 1 1 1 3 3 2 0 TolA binding protein trimerisation DUF4795 PF16043.5 gi|55377292|ref|YP_135142.1| - 0.26 10.9 4.7 0.52 9.9 4.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) CLZ PF16526.5 gi|55377292|ref|YP_135142.1| - 0.28 11.6 2.9 1.7 9.1 0.5 2.9 1 1 2 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Ax_dynein_light PF10211.9 gi|55377292|ref|YP_135142.1| - 0.28 11.1 3.5 0.25 11.3 1.3 2.0 1 1 0 2 2 1 0 Axonemal dynein light chain FlxA PF14282.6 gi|55377292|ref|YP_135142.1| - 0.29 11.1 2.0 8.1 6.5 0.9 2.4 1 1 0 2 2 2 0 FlxA-like protein DivIVA PF05103.13 gi|55377292|ref|YP_135142.1| - 0.3 11.2 8.3 2 8.5 0.9 2.7 3 0 0 3 3 2 0 DivIVA protein Nsp1_C PF05064.13 gi|55377292|ref|YP_135142.1| - 0.31 10.9 5.8 0.66 9.8 5.3 1.8 1 1 0 1 1 1 0 Nsp1-like C-terminal region Golgin_A5 PF09787.9 gi|55377292|ref|YP_135142.1| - 0.35 10.3 8.3 0.44 10.0 6.8 1.6 1 1 1 2 2 2 0 Golgin subfamily A member 5 THOC7 PF05615.13 gi|55377292|ref|YP_135142.1| - 0.36 11.1 4.0 2.5 8.4 4.0 2.4 1 1 0 1 1 1 0 Tho complex subunit 7 DUF4407 PF14362.6 gi|55377292|ref|YP_135142.1| - 0.37 10.1 5.2 0.58 9.4 5.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HMMR_N PF15905.5 gi|55377292|ref|YP_135142.1| - 0.38 10.2 5.1 0.85 9.0 5.1 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal UPF0242 PF06785.11 gi|55377292|ref|YP_135142.1| - 0.38 10.8 6.2 0.7 10.0 5.6 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DivIC PF04977.15 gi|55377292|ref|YP_135142.1| - 0.38 10.5 10.7 3.6 7.4 0.1 3.8 2 1 1 4 4 3 0 Septum formation initiator IFT57 PF10498.9 gi|55377292|ref|YP_135142.1| - 0.41 9.6 7.7 1.5 7.7 7.7 2.1 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Cauli_AT PF03233.13 gi|55377292|ref|YP_135142.1| - 0.57 10.1 1.8 7.8 6.4 0.0 2.3 1 1 1 2 2 2 0 Aphid transmission protein DUF16 PF01519.16 gi|55377292|ref|YP_135142.1| - 0.59 10.6 6.6 3 8.4 3.3 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 GAS PF13851.6 gi|55377292|ref|YP_135142.1| - 0.61 9.4 2.7 1.8 7.9 1.1 2.1 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding V-SNARE PF05008.15 gi|55377292|ref|YP_135142.1| - 0.65 10.4 4.2 1.6 9.2 0.1 3.0 1 1 2 3 3 2 0 Vesicle transport v-SNARE protein N-terminus Seryl_tRNA_N PF02403.22 gi|55377292|ref|YP_135142.1| - 0.7 10.1 6.2 15 5.9 4.6 3.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain BST2 PF16716.5 gi|55377292|ref|YP_135142.1| - 0.77 10.4 3.3 2.5 8.8 0.2 2.6 1 1 2 3 3 2 0 Bone marrow stromal antigen 2 DUF948 PF06103.11 gi|55377292|ref|YP_135142.1| - 0.79 10.0 4.7 0.55 10.5 0.3 2.6 2 2 1 3 3 2 0 Bacterial protein of unknown function (DUF948) HOOK PF05622.12 gi|55377292|ref|YP_135142.1| - 0.81 7.8 9.2 1.1 7.4 9.2 1.1 1 0 0 1 1 1 0 HOOK protein CC2-LZ PF16516.5 gi|55377292|ref|YP_135142.1| - 0.92 9.9 6.3 0.99 9.8 3.3 2.5 2 1 0 2 2 1 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator TMF_TATA_bd PF12325.8 gi|55377292|ref|YP_135142.1| - 0.93 9.7 8.0 1.5 9.1 5.9 2.3 1 1 0 2 2 1 0 TATA element modulatory factor 1 TATA binding zf-ZPR1 PF03367.13 gi|55377292|ref|YP_135142.1| - 1.1 9.1 3.3 1.8 8.4 0.9 2.4 2 1 1 3 3 2 0 ZPR1 zinc-finger domain DASH_Dam1 PF08653.10 gi|55377292|ref|YP_135142.1| - 1.2 9.0 3.1 22 4.9 0.0 3.7 4 0 0 4 4 4 0 DASH complex subunit Dam1 CorA PF01544.18 gi|55377292|ref|YP_135142.1| - 1.3 8.3 4.8 2.8 7.2 0.2 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DHR10 PF18595.1 gi|55377292|ref|YP_135142.1| - 1.3 9.0 7.1 9.9 6.3 6.2 2.3 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Prefoldin_2 PF01920.20 gi|55377292|ref|YP_135142.1| - 1.4 8.9 7.5 2.2 8.3 0.8 3.7 1 1 2 3 3 3 0 Prefoldin subunit XhlA PF10779.9 gi|55377292|ref|YP_135142.1| - 1.4 9.2 7.9 22 5.4 0.0 3.4 2 1 1 3 3 3 0 Haemolysin XhlA Phage_GP20 PF06810.11 gi|55377292|ref|YP_135142.1| - 2 8.2 12.0 0.29 10.9 3.6 2.6 1 1 0 2 2 2 0 Phage minor structural protein GP20 TMF_DNA_bd PF12329.8 gi|55377292|ref|YP_135142.1| - 2.5 8.2 6.4 12 5.9 0.7 3.0 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding MerR-DNA-bind PF09278.11 gi|55377292|ref|YP_135142.1| - 5.2 7.7 5.9 9.8 6.8 2.4 2.9 2 1 1 3 3 3 0 MerR, DNA binding SlyX PF04102.12 gi|55377292|ref|YP_135142.1| - 9.3 7.0 7.1 15 6.3 2.2 3.4 1 1 3 4 4 4 0 SlyX Lactamase_B_2 PF12706.7 gi|55377293|ref|YP_135143.1| - 1.9e-17 63.4 1.4 2.4e-17 63.1 1.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|55377293|ref|YP_135143.1| - 5.4e-11 42.6 0.1 7.5e-11 42.2 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3038 PF11237.8 gi|55377293|ref|YP_135143.1| - 0.04 14.0 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) Usp PF00582.26 gi|55377294|ref|YP_135144.1| - 2.1e-30 106.1 2.2 2.4e-30 105.9 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|55377294|ref|YP_135144.1| - 0.032 14.2 0.0 0.058 13.4 0.0 1.3 1 1 0 1 1 1 0 DNA photolyase Com_YlbF PF06133.11 gi|55377295|ref|YP_135145.1| - 4e-22 78.8 10.9 4.5e-22 78.6 10.9 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA DUF3080 PF11279.8 gi|55377295|ref|YP_135145.1| - 0.0018 17.5 0.9 0.0022 17.3 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3080) MCPsignal PF00015.21 gi|55377296|ref|YP_135146.1| - 1.7e-36 125.6 50.2 1.4e-34 119.4 28.5 3.8 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|55377296|ref|YP_135146.1| - 3e-15 56.2 0.0 1.4e-14 54.0 0.0 2.2 2 0 0 2 2 1 1 PAS fold PAS_4 PF08448.10 gi|55377296|ref|YP_135146.1| - 3.9e-12 46.4 2.7 5.8e-12 45.8 0.1 2.5 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|55377296|ref|YP_135146.1| - 6.3e-09 36.0 0.0 3.7e-08 33.6 0.0 2.4 2 0 0 2 2 1 1 PAS domain PAS_8 PF13188.7 gi|55377296|ref|YP_135146.1| - 1.7e-07 31.1 0.1 7.7e-07 29.0 0.1 2.2 1 1 0 1 1 1 1 PAS domain Laminin_II PF06009.12 gi|55377296|ref|YP_135146.1| - 6e-06 26.3 30.7 0.0012 18.8 7.7 4.0 1 1 3 4 4 4 3 Laminin Domain II BLOC1_2 PF10046.9 gi|55377296|ref|YP_135146.1| - 3.3e-05 24.1 24.2 0.012 15.9 1.2 4.7 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|55377296|ref|YP_135146.1| - 6.3e-05 23.2 29.9 0.11 12.8 5.1 4.6 2 2 1 4 4 4 2 Bacterial protein of unknown function (DUF948) PAS_7 PF12860.7 gi|55377296|ref|YP_135146.1| - 0.0023 18.1 0.0 0.0023 18.1 0.0 4.1 2 2 0 4 4 4 1 PAS fold Alanine_zipper PF11839.8 gi|55377296|ref|YP_135146.1| - 0.0029 17.9 3.8 0.0029 17.9 3.8 4.8 2 1 2 5 5 5 1 Alanine-zipper, major outer membrane lipoprotein MLTR_LBD PF17765.1 gi|55377296|ref|YP_135146.1| - 0.0052 16.9 0.0 0.0052 16.9 0.0 3.1 3 1 0 3 3 3 1 MmyB-like transcription regulator ligand binding domain CHASE3 PF05227.13 gi|55377296|ref|YP_135146.1| - 0.0061 16.5 3.9 0.0061 16.5 3.9 4.3 1 1 2 3 3 2 1 CHASE3 domain DUF1664 PF07889.12 gi|55377296|ref|YP_135146.1| - 0.0096 16.0 29.5 1.2 9.2 1.5 4.3 1 1 2 4 4 4 3 Protein of unknown function (DUF1664) ApoO PF09769.9 gi|55377296|ref|YP_135146.1| - 0.011 15.6 9.2 0.86 9.6 1.2 3.6 2 2 1 3 3 3 0 Apolipoprotein O Syntaxin_2 PF14523.6 gi|55377296|ref|YP_135146.1| - 0.012 16.0 12.5 8.4 6.8 0.6 4.5 1 1 2 3 3 3 0 Syntaxin-like protein Flagellar_rod PF05149.12 gi|55377296|ref|YP_135146.1| - 0.017 14.6 23.6 0.07 12.6 6.5 3.1 1 1 1 3 3 3 0 Paraflagellar rod protein Syntaxin-6_N PF09177.11 gi|55377296|ref|YP_135146.1| - 0.044 14.3 28.1 0.046 14.3 3.1 4.2 2 2 1 3 3 3 0 Syntaxin 6, N-terminal SbsC_C PF18058.1 gi|55377296|ref|YP_135146.1| - 0.084 13.1 0.3 0.084 13.1 0.3 2.7 2 1 2 4 4 4 0 SbsC C-terminal domain PAS_3 PF08447.12 gi|55377296|ref|YP_135146.1| - 0.085 13.2 0.0 0.32 11.3 0.0 2.1 1 0 0 1 1 1 0 PAS fold Fib_alpha PF08702.10 gi|55377296|ref|YP_135146.1| - 0.2 11.9 20.5 3.6 7.7 2.3 3.6 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family DUF2451 PF10474.9 gi|55377296|ref|YP_135146.1| - 0.2 11.4 1.3 3.7 7.3 0.0 2.5 1 1 1 2 2 2 0 Protein of unknown function C-terminus (DUF2451) KxDL PF10241.9 gi|55377296|ref|YP_135146.1| - 0.24 11.7 11.6 27 5.1 0.5 4.5 2 2 0 4 4 4 0 Uncharacterized conserved protein BAR_3 PF16746.5 gi|55377296|ref|YP_135146.1| - 0.28 10.9 12.0 0.02 14.6 2.4 2.5 2 1 0 2 2 2 0 BAR domain of APPL family MAD PF05557.13 gi|55377296|ref|YP_135146.1| - 0.28 9.5 27.7 1.2 7.4 12.7 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein FlgN PF05130.12 gi|55377296|ref|YP_135146.1| - 0.3 11.6 27.1 1.8 9.1 11.3 3.5 1 1 3 4 4 4 0 FlgN protein TMPIT PF07851.13 gi|55377296|ref|YP_135146.1| - 0.31 10.2 20.4 1.8 7.7 2.2 3.3 1 1 2 3 3 3 0 TMPIT-like protein F_actin_bind PF08919.10 gi|55377296|ref|YP_135146.1| - 0.43 10.7 8.5 0.63 10.2 0.2 3.9 1 1 2 3 3 3 0 F-actin binding COG2 PF06148.11 gi|55377296|ref|YP_135146.1| - 0.48 10.5 28.6 0.58 10.2 2.1 4.7 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 LXG PF04740.12 gi|55377296|ref|YP_135146.1| - 0.52 10.0 29.2 1.1 9.0 4.2 3.4 1 1 1 3 3 3 0 LXG domain of WXG superfamily Lipoprotein_7 PF01540.16 gi|55377296|ref|YP_135146.1| - 0.54 9.5 27.9 1.1 8.5 16.8 2.1 1 1 1 2 2 2 0 Adhesin lipoprotein Spectrin PF00435.21 gi|55377296|ref|YP_135146.1| - 0.59 10.6 26.4 0.26 11.8 5.5 4.3 1 1 4 5 5 5 0 Spectrin repeat Cob_adeno_trans PF01923.18 gi|55377296|ref|YP_135146.1| - 0.84 9.7 20.3 0.78 9.9 4.0 3.5 1 1 1 3 3 3 0 Cobalamin adenosyltransferase ISG65-75 PF11727.8 gi|55377296|ref|YP_135146.1| - 0.86 8.8 29.1 0.24 10.6 6.7 3.3 1 1 2 3 3 3 0 Invariant surface glycoprotein Laminin_I PF06008.14 gi|55377296|ref|YP_135146.1| - 1.3 8.6 33.6 1.3 8.7 12.4 3.7 1 1 2 3 3 3 0 Laminin Domain I Serine_rich PF08824.10 gi|55377296|ref|YP_135146.1| - 1.4 8.9 17.1 2.4 8.1 0.4 4.0 1 1 2 3 3 3 0 Serine rich protein interaction domain TMP_2 PF06791.13 gi|55377296|ref|YP_135146.1| - 1.8 8.2 26.1 3.6 7.2 1.3 3.2 1 1 2 3 3 3 0 Prophage tail length tape measure protein DUF812 PF05667.11 gi|55377296|ref|YP_135146.1| - 1.9 7.3 33.3 0.92 8.3 20.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF812) FH2 PF02181.23 gi|55377296|ref|YP_135146.1| - 2 7.5 19.2 0.43 9.6 2.8 3.1 2 1 1 3 3 3 0 Formin Homology 2 Domain Sec34 PF04136.15 gi|55377296|ref|YP_135146.1| - 2 8.3 20.3 2.7 7.8 1.1 4.4 1 1 3 5 5 5 0 Sec34-like family Alpha-2-MRAP_C PF06401.11 gi|55377296|ref|YP_135146.1| - 2.1 8.3 13.5 0.29 11.1 1.9 2.8 1 1 0 2 2 2 0 Alpha-2-macroglobulin RAP, C-terminal domain ATG16 PF08614.11 gi|55377296|ref|YP_135146.1| - 2.3 8.4 31.9 0.81 9.9 11.4 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Dor1 PF04124.12 gi|55377296|ref|YP_135146.1| - 3 6.4 17.3 1 8.0 4.8 3.1 1 1 1 2 2 2 0 Dor1-like family DUF489 PF04356.12 gi|55377296|ref|YP_135146.1| - 3.2 7.7 6.3 0.92 9.5 2.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF489) SKA1 PF07160.12 gi|55377296|ref|YP_135146.1| - 3.9 7.3 19.2 1.2 8.9 5.0 2.9 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 dCache_1 PF02743.18 gi|55377296|ref|YP_135146.1| - 5 6.8 22.4 5.4 6.7 1.9 4.4 1 1 3 4 4 4 0 Cache domain Peptidase_C65 PF10275.9 gi|55377296|ref|YP_135146.1| - 5.1 6.5 12.4 6.9 6.0 0.8 3.1 1 1 1 3 3 3 0 Peptidase C65 Otubain DUF883 PF05957.13 gi|55377296|ref|YP_135146.1| - 5.1 7.8 32.3 0.24 12.0 4.1 4.6 2 1 3 5 5 5 0 Bacterial protein of unknown function (DUF883) Atg14 PF10186.9 gi|55377296|ref|YP_135146.1| - 6.5 5.7 13.9 1.4 7.9 2.1 2.5 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 CorA PF01544.18 gi|55377296|ref|YP_135146.1| - 7.6 5.8 23.6 1.1 8.5 8.3 3.0 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Prominin PF05478.11 gi|55377296|ref|YP_135146.1| - 7.7 4.3 16.8 3.3 5.6 5.5 2.3 1 1 0 2 2 2 0 Prominin Tweety PF04906.13 gi|55377296|ref|YP_135146.1| - 8 5.0 14.3 0.29 9.8 2.7 2.9 1 1 1 3 3 3 0 Tweety DUF4795 PF16043.5 gi|55377296|ref|YP_135146.1| - 9 5.8 23.9 1.3e+03 -1.2 23.9 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Diphthamide_syn PF01866.17 gi|55377297|ref|YP_135147.1| - 1.1e-78 264.7 0.0 1.4e-78 264.4 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|55377297|ref|YP_135147.1| - 0.017 15.8 0.0 1 10.1 0.0 2.4 2 0 0 2 2 2 0 GTP-binding GTPase N-terminal DAHP_snth_FXD PF18152.1 gi|55377297|ref|YP_135147.1| - 0.19 11.6 0.0 0.55 10.1 0.0 1.8 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain Peptidase_M54 PF07998.11 gi|55377298|ref|YP_135148.1| - 2.8e-05 24.2 0.0 4.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M54 PsbY PF06298.11 gi|55377298|ref|YP_135148.1| - 0.058 13.3 1.1 0.12 12.3 1.1 1.5 1 0 0 1 1 1 0 Photosystem II protein Y (PsbY) GIDE PF12483.8 gi|55377299|ref|YP_135149.1| - 0.0019 17.6 0.0 0.0031 16.9 0.0 1.2 1 0 0 1 1 1 1 E3 Ubiquitin ligase LemA PF04011.12 gi|55377300|ref|YP_135150.1| - 6e-36 123.5 1.3 7.3e-36 123.3 1.3 1.1 1 0 0 1 1 1 1 LemA family Nre_C PF04895.12 gi|55377300|ref|YP_135150.1| - 0.0039 17.1 0.1 0.53 10.2 0.1 2.3 2 0 0 2 2 2 2 Archaeal Nre, C-terminal Erp_C PF06780.11 gi|55377300|ref|YP_135150.1| - 0.058 13.4 0.3 0.11 12.5 0.1 1.5 2 0 0 2 2 2 0 Erp protein C-terminus YkyA PF10368.9 gi|55377300|ref|YP_135150.1| - 0.098 12.3 2.6 0.18 11.4 2.5 1.4 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein PAS_4 PF08448.10 gi|55377301|ref|YP_135151.1| - 8.9e-25 87.1 0.7 4.3e-12 46.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|55377301|ref|YP_135151.1| - 2e-23 83.0 0.0 4.5e-23 81.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|55377301|ref|YP_135151.1| - 1e-16 60.9 0.0 3.4e-07 30.3 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|55377301|ref|YP_135151.1| - 8.8e-13 48.4 0.0 1.7e-07 31.5 0.0 2.9 2 1 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|55377301|ref|YP_135151.1| - 3.1e-11 43.1 0.2 1.3e-10 41.1 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|55377301|ref|YP_135151.1| - 1e-09 38.8 2.3 3.2e-09 37.2 0.1 3.0 3 0 0 3 3 3 1 GAF domain PAS_8 PF13188.7 gi|55377301|ref|YP_135151.1| - 1.3e-08 34.7 0.0 3.1e-06 27.1 0.0 3.1 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|55377301|ref|YP_135151.1| - 8.6e-08 32.0 0.0 1.6e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|55377301|ref|YP_135151.1| - 8e-05 22.6 0.1 0.00019 21.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain sCache_3_3 PF17202.4 gi|55377301|ref|YP_135151.1| - 0.01 16.2 0.0 0.028 14.9 0.0 1.7 1 0 0 1 1 1 0 Single cache domain 3 HATPase_c_3 PF13589.6 gi|55377301|ref|YP_135151.1| - 0.022 14.6 0.2 0.067 13.0 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|55377301|ref|YP_135151.1| - 0.023 15.1 0.0 0.052 13.9 0.0 1.7 1 0 0 1 1 1 0 GAF domain PAS_10 PF13596.6 gi|55377301|ref|YP_135151.1| - 0.071 13.7 0.0 1.8 9.2 0.1 2.9 2 1 0 2 2 2 0 PAS domain KH_5 PF13184.6 gi|55377301|ref|YP_135151.1| - 0.13 12.3 0.1 0.78 9.9 0.0 2.3 2 0 0 2 2 2 0 NusA-like KH domain Response_reg PF00072.24 gi|55377302|ref|YP_135152.1| - 4.4e-19 68.7 0.1 5.1e-19 68.5 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|55377303|ref|YP_135153.1| - 2.6e-16 60.1 0.2 1.4e-15 57.8 0.0 2.0 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|55377303|ref|YP_135153.1| - 3.3e-14 53.0 0.0 6.6e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 gi|55377303|ref|YP_135153.1| - 4.1e-05 23.5 0.2 0.00011 22.1 0.2 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|55377303|ref|YP_135153.1| - 5.3e-05 22.8 0.2 0.00013 21.6 0.2 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|55377303|ref|YP_135153.1| - 0.0047 16.8 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|55377303|ref|YP_135153.1| - 0.085 12.9 2.7 0.5 10.4 1.0 3.0 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain CsgF PF10614.9 gi|55377303|ref|YP_135153.1| - 0.19 12.0 0.6 6.6 7.0 0.0 2.3 1 1 1 2 2 2 0 Type VIII secretion system (T8SS), CsgF protein HATPase_c PF02518.26 gi|55377304|ref|YP_135154.1| - 7.9e-17 61.8 0.0 1.9e-16 60.5 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55377304|ref|YP_135154.1| - 2.5e-10 40.5 0.3 7.9e-10 39.0 0.3 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55377304|ref|YP_135154.1| - 2.1e-07 31.1 0.0 5.1e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|55377304|ref|YP_135154.1| - 2e-05 24.5 1.4 4.3e-05 23.5 0.1 2.2 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|55377304|ref|YP_135154.1| - 2.8e-05 23.8 0.1 6.3e-05 22.6 0.1 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase GAF PF01590.26 gi|55377304|ref|YP_135154.1| - 0.00075 20.1 0.0 0.0017 19.0 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|55377304|ref|YP_135154.1| - 0.0051 16.7 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain Ysc84 PF04366.12 gi|55377304|ref|YP_135154.1| - 0.0073 16.1 0.0 0.041 13.6 0.0 2.2 2 1 0 2 2 2 1 Las17-binding protein actin regulator HisKA PF00512.25 gi|55377304|ref|YP_135154.1| - 0.0085 16.1 0.0 0.027 14.5 0.0 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|55377304|ref|YP_135154.1| - 0.086 12.8 0.1 0.55 10.2 0.0 2.4 2 1 1 3 3 3 0 PAS fold MTS PF05175.14 gi|55377305|ref|YP_135155.1| - 1.8e-12 47.2 0.0 2.7e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|55377305|ref|YP_135155.1| - 6.1e-10 39.1 0.1 7.8e-09 35.5 0.1 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|55377305|ref|YP_135155.1| - 1.4e-09 38.6 0.0 3.2e-09 37.4 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55377305|ref|YP_135155.1| - 2.5e-09 37.1 0.0 5e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|55377305|ref|YP_135155.1| - 5.8e-09 35.8 0.0 8.1e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|55377305|ref|YP_135155.1| - 6.6e-08 33.1 0.0 1.7e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|55377305|ref|YP_135155.1| - 8e-07 28.9 0.0 1.1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 gi|55377305|ref|YP_135155.1| - 3e-06 27.3 0.0 3.6e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55377305|ref|YP_135155.1| - 2.3e-05 23.9 0.0 3.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|55377305|ref|YP_135155.1| - 0.00044 20.9 0.0 0.00088 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377305|ref|YP_135155.1| - 0.0012 18.7 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|55377305|ref|YP_135155.1| - 0.0034 17.3 0.0 0.0048 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|55377305|ref|YP_135155.1| - 0.0058 16.8 0.0 0.0065 16.6 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|55377305|ref|YP_135155.1| - 0.0092 15.1 0.0 0.011 14.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|55377305|ref|YP_135155.1| - 0.0096 15.2 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase N6_Mtase PF02384.16 gi|55377305|ref|YP_135155.1| - 0.01 15.2 0.0 0.019 14.2 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_15 PF09445.10 gi|55377305|ref|YP_135155.1| - 0.019 14.5 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|55377305|ref|YP_135155.1| - 0.024 14.4 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein tRNA_anti-like PF12869.7 gi|55377305|ref|YP_135155.1| - 0.1 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 tRNA_anti-like Methyltransf_9 PF08003.11 gi|55377305|ref|YP_135155.1| - 0.11 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) FAE1_CUT1_RppA PF08392.12 gi|55377305|ref|YP_135155.1| - 0.22 10.8 0.0 0.33 10.2 0.0 1.1 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein Rhomboid PF01694.22 gi|55377306|ref|YP_135156.1| - 1.9e-07 31.2 15.2 1.9e-07 31.2 15.2 2.5 2 1 0 2 2 2 1 Rhomboid family EMP70 PF02990.16 gi|55377306|ref|YP_135156.1| - 0.1 11.3 7.0 0.18 10.4 7.0 1.3 1 0 0 1 1 1 0 Endomembrane protein 70 DUF1751 PF08551.10 gi|55377306|ref|YP_135156.1| - 0.2 12.3 2.0 0.48 11.0 0.4 2.5 2 0 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) DUF4131 PF13567.6 gi|55377306|ref|YP_135156.1| - 3.1 7.4 29.8 0.75 9.4 2.1 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4131) DoxX PF07681.12 gi|55377307|ref|YP_135157.1| - 3.1e-09 37.3 10.2 3.1e-09 37.3 10.2 1.6 2 0 0 2 2 2 1 DoxX SURF4 PF02077.15 gi|55377307|ref|YP_135157.1| - 0.0005 19.8 0.2 0.00078 19.1 0.2 1.3 1 0 0 1 1 1 1 SURF4 family HR_lesion PF05514.11 gi|55377307|ref|YP_135157.1| - 0.00062 20.0 0.6 0.0011 19.2 0.2 1.6 1 1 1 2 2 2 1 HR-like lesion-inducing DUF2625 PF10946.8 gi|55377307|ref|YP_135157.1| - 0.09 11.8 0.5 0.73 8.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF2625 ATP-synt_J PF04911.12 gi|55377307|ref|YP_135157.1| - 0.14 11.7 0.9 9.3 5.9 0.1 3.0 3 0 0 3 3 3 0 ATP synthase j chain HxlR PF01638.17 gi|55377308|ref|YP_135158.1| - 6e-22 77.3 0.0 7.8e-22 76.9 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|55377308|ref|YP_135158.1| - 1e-06 29.1 0.0 1.5e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|55377308|ref|YP_135158.1| - 5.2e-06 26.6 0.0 7e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|55377308|ref|YP_135158.1| - 0.00015 21.6 0.1 0.00022 21.1 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55377308|ref|YP_135158.1| - 0.00024 21.0 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|55377308|ref|YP_135158.1| - 0.00033 20.5 0.0 0.00051 19.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55377308|ref|YP_135158.1| - 0.00041 20.3 0.3 0.00064 19.7 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.14 gi|55377308|ref|YP_135158.1| - 0.00087 19.2 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|55377308|ref|YP_135158.1| - 0.0017 18.4 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation TrmB PF01978.19 gi|55377308|ref|YP_135158.1| - 0.0019 18.0 0.0 0.003 17.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|55377308|ref|YP_135158.1| - 0.018 15.0 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Trp_repressor PF01371.19 gi|55377308|ref|YP_135158.1| - 0.019 15.1 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein DUF2250 PF10007.9 gi|55377308|ref|YP_135158.1| - 0.034 14.2 0.0 6.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) CPSase_L_D3 PF02787.19 gi|55377308|ref|YP_135158.1| - 0.054 13.8 0.0 0.059 13.7 0.0 1.1 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HTH_IclR PF09339.10 gi|55377308|ref|YP_135158.1| - 0.11 12.3 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|55377308|ref|YP_135158.1| - 0.11 12.4 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_43 PF09904.9 gi|55377308|ref|YP_135158.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix TFIIE_alpha PF02002.17 gi|55377308|ref|YP_135158.1| - 0.13 12.1 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit DUF4364 PF14277.6 gi|55377308|ref|YP_135158.1| - 0.24 11.2 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HLH PF00010.26 gi|55377309|ref|YP_135159.1| - 0.034 14.1 0.1 0.061 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-loop-helix DNA-binding domain Glycos_transf_2 PF00535.26 gi|55377310|ref|YP_135160.1| - 7.3e-16 58.4 0.0 1.1e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377310|ref|YP_135160.1| - 2.1e-08 34.3 0.0 3.3e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|55377310|ref|YP_135160.1| - 1.7e-06 28.4 0.0 3.2e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|55377310|ref|YP_135160.1| - 0.00031 21.1 0.0 0.00066 20.1 0.0 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain SfLAP PF11139.8 gi|55377310|ref|YP_135160.1| - 0.017 14.6 0.4 0.023 14.2 0.4 1.2 1 0 0 1 1 1 0 Sap, sulfolipid-1-addressing protein UPF0060 PF02694.15 gi|55377310|ref|YP_135160.1| - 0.086 13.1 1.8 0.14 12.4 1.8 1.3 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family TrmB PF01978.19 gi|55377311|ref|YP_135161.1| - 5.6e-19 67.8 0.0 1.2e-18 66.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|55377311|ref|YP_135161.1| - 8.8e-05 22.2 0.0 0.00017 21.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|55377311|ref|YP_135161.1| - 0.0033 17.3 0.0 0.0081 16.0 0.0 1.6 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|55377311|ref|YP_135161.1| - 0.17 12.2 0.0 0.28 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Glycos_transf_1 PF00534.20 gi|55377312|ref|YP_135162.1| - 3.3e-27 95.1 0.0 4.1e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55377312|ref|YP_135162.1| - 1.6e-19 70.7 0.1 2.3e-19 70.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|55377312|ref|YP_135162.1| - 2.9e-07 30.8 0.1 2.3e-06 27.9 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Sulfatase PF00884.23 gi|55377313|ref|YP_135163.1| - 8.8e-25 87.7 0.3 1.2e-24 87.2 0.3 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|55377313|ref|YP_135163.1| - 0.00019 21.1 0.7 0.00054 19.7 0.1 2.0 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphodiest PF01663.22 gi|55377314|ref|YP_135164.1| - 2.7e-11 43.7 0.2 2.2e-10 40.6 0.2 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|55377314|ref|YP_135164.1| - 8.1e-05 22.1 0.0 0.00012 21.6 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily PglZ PF08665.12 gi|55377315|ref|YP_135165.1| - 0.046 13.8 0.3 0.1 12.7 0.0 1.7 2 0 0 2 2 2 0 PglZ domain Sulfatase PF00884.23 gi|55377316|ref|YP_135166.1| - 1.9e-41 142.5 0.1 2.6e-41 142.0 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|55377316|ref|YP_135166.1| - 0.00089 18.9 5.3 0.077 12.6 5.2 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|55377316|ref|YP_135166.1| - 0.012 14.2 0.0 0.4 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF229) Polysacc_synt_C PF14667.6 gi|55377317|ref|YP_135167.1| - 2.5e-16 60.0 19.7 2.5e-16 60.0 19.7 3.6 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|55377317|ref|YP_135167.1| - 2.7e-08 33.6 27.7 6.2e-08 32.3 11.4 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|55377317|ref|YP_135167.1| - 1.1e-06 27.6 12.3 1.1e-06 27.6 12.3 2.9 2 1 1 3 3 3 2 Lipid II flippase MurJ MatE PF01554.18 gi|55377317|ref|YP_135167.1| - 0.00036 20.2 4.5 0.00036 20.2 4.5 4.0 4 1 0 4 4 4 2 MatE Sulfatase PF00884.23 gi|55377318|ref|YP_135168.1| - 2.9e-37 128.7 0.4 3.6e-37 128.4 0.4 1.1 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|55377318|ref|YP_135168.1| - 1.8e-06 28.1 0.1 4.3e-06 26.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF4994 PF16385.5 gi|55377318|ref|YP_135168.1| - 0.0011 18.9 0.2 0.0059 16.5 0.2 2.2 1 1 1 2 2 2 1 Domain of unknown function Sulfatase_C PF14707.6 gi|55377318|ref|YP_135168.1| - 0.22 12.3 0.4 0.39 11.5 0.4 1.3 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase Glycos_transf_1 PF00534.20 gi|55377319|ref|YP_135169.1| - 9.8e-29 100.1 0.0 1.5e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55377319|ref|YP_135169.1| - 2.3e-26 92.8 0.0 7.1e-26 91.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|55377319|ref|YP_135169.1| - 4.6e-08 33.3 0.0 1e-07 32.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|55377319|ref|YP_135169.1| - 0.096 13.1 2.9 0.22 12.0 2.9 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_2 PF00535.26 gi|55377320|ref|YP_135170.1| - 1.6e-19 70.4 0.1 2e-19 70.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377320|ref|YP_135170.1| - 2.2e-07 31.0 1.0 6.9e-07 29.4 1.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|55377320|ref|YP_135170.1| - 2.5e-06 27.2 2.1 0.00019 21.0 0.3 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|55377320|ref|YP_135170.1| - 0.26 11.2 1.6 0.93 9.4 1.6 2.1 1 1 0 1 1 1 0 Glycosyl transferase family group 2 STT3 PF02516.14 gi|55377321|ref|YP_135171.1| - 4.3e-25 88.6 15.4 1.2e-24 87.1 15.4 1.8 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|55377321|ref|YP_135171.1| - 1.6e-22 79.6 5.8 5e-22 78.0 5.8 1.9 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain PMT_4TMC PF16192.5 gi|55377321|ref|YP_135171.1| - 0.018 14.7 0.5 0.018 14.7 0.5 3.8 4 0 0 4 4 4 0 C-terminal four TMM region of protein-O-mannosyltransferase Pollen_Ole_e_I PF01190.17 gi|55377321|ref|YP_135171.1| - 0.093 13.1 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Pollen proteins Ole e I like 4HBT PF03061.22 gi|55377324|ref|YP_135174.1| - 7.8e-17 61.4 0.1 1.1e-16 61.0 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|55377324|ref|YP_135174.1| - 0.053 14.0 0.0 0.065 13.7 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily PadR PF03551.14 gi|55377325|ref|YP_135175.1| - 6.6e-17 61.2 0.8 8.2e-17 60.9 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|55377325|ref|YP_135175.1| - 0.0032 17.4 0.1 0.0044 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|55377325|ref|YP_135175.1| - 0.02 15.4 0.1 0.027 14.9 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|55377325|ref|YP_135175.1| - 0.072 12.9 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|55377325|ref|YP_135175.1| - 0.12 12.1 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TraB PF01963.17 gi|55377326|ref|YP_135176.1| - 2.9e-26 92.9 0.0 2.7e-15 57.0 0.0 2.1 2 0 0 2 2 2 2 TraB family Peptidase_M50 PF02163.22 gi|55377327|ref|YP_135177.1| - 7.6e-05 22.1 14.4 0.034 13.4 8.0 2.7 1 1 1 2 2 2 2 Peptidase family M50 AIRS_C PF02769.22 gi|55377328|ref|YP_135178.1| - 2.1e-23 83.1 0.0 3.3e-23 82.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|55377328|ref|YP_135178.1| - 1.1e-14 54.8 2.5 2.3e-14 53.8 2.5 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain CBS PF00571.28 gi|55377330|ref|YP_135180.1| - 2.5e-20 72.7 0.6 2.3e-09 37.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|55377330|ref|YP_135180.1| - 5.8e-12 45.5 0.1 2.4e-11 43.5 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|55377330|ref|YP_135180.1| - 6.6e-12 45.6 1.5 1.3e-11 44.6 1.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|55377330|ref|YP_135180.1| - 4.6e-07 29.7 0.1 7.5e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|55377330|ref|YP_135180.1| - 0.00018 21.4 0.0 0.00034 20.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|55377330|ref|YP_135180.1| - 0.00036 20.3 1.2 0.00042 20.1 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|55377330|ref|YP_135180.1| - 0.0025 18.2 0.0 0.0058 17.1 0.0 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Pou PF00157.17 gi|55377330|ref|YP_135180.1| - 0.075 13.0 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_24 PF13412.6 gi|55377330|ref|YP_135180.1| - 0.078 12.6 0.2 0.73 9.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF3618 PF12277.8 gi|55377330|ref|YP_135180.1| - 0.26 11.6 3.3 0.21 11.8 1.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) DUF555 PF04475.12 gi|55377331|ref|YP_135181.1| - 1.4e-47 160.2 0.1 1.4e-47 160.2 0.1 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF555) Proteasome PF00227.26 gi|55377332|ref|YP_135182.1| - 3.8e-45 153.7 0.6 4.5e-45 153.5 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit Methyltransf_21 PF05050.12 gi|55377333|ref|YP_135183.1| - 4.8e-20 72.3 0.0 6.3e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|55377333|ref|YP_135183.1| - 1e-05 25.0 0.0 1.7e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|55377333|ref|YP_135183.1| - 0.0036 17.1 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein DOT1 PF08123.13 gi|55377333|ref|YP_135183.1| - 0.077 12.5 0.0 4.5 6.7 0.0 2.2 2 0 0 2 2 2 0 Histone methylation protein DOT1 PGM_PMM_I PF02878.16 gi|55377334|ref|YP_135184.1| - 3.6e-32 110.9 0.1 9.1e-32 109.7 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|55377334|ref|YP_135184.1| - 1.6e-21 76.9 0.3 3.3e-21 75.8 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|55377334|ref|YP_135184.1| - 4.8e-13 49.1 0.1 2.5e-12 46.8 0.1 2.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|55377334|ref|YP_135184.1| - 0.002 18.3 0.1 0.0052 17.0 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III dCMP_cyt_deam_1 PF00383.23 gi|55377335|ref|YP_135185.1| - 4e-15 55.5 0.0 4.5e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|55377335|ref|YP_135185.1| - 2.7e-13 50.3 0.5 3.6e-13 49.9 0.5 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region PNP_UDP_1 PF01048.20 gi|55377336|ref|YP_135186.1| - 1.9e-45 155.0 1.1 2.3e-45 154.7 1.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DAO_C PF16901.5 gi|55377336|ref|YP_135186.1| - 0.056 13.3 0.1 0.094 12.6 0.1 1.4 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase Pyr_redox_2 PF07992.14 gi|55377337|ref|YP_135187.1| - 1.6e-39 135.9 0.2 1.9e-39 135.7 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55377337|ref|YP_135187.1| - 3.2e-07 30.8 0.4 1e-05 26.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HrcA_DNA-bdg PF03444.15 gi|55377338|ref|YP_135188.1| - 2.4e-39 132.8 0.1 3.5e-39 132.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|55377338|ref|YP_135188.1| - 2.2e-07 31.1 0.0 4.4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|55377338|ref|YP_135188.1| - 3.3e-07 30.1 0.0 5e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|55377338|ref|YP_135188.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Turandot PF07240.11 gi|55377338|ref|YP_135188.1| - 0.059 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Stress-inducible humoral factor Turandot HTH_38 PF13936.6 gi|55377338|ref|YP_135188.1| - 0.11 12.2 0.0 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Rio2_N PF09202.11 gi|55377338|ref|YP_135188.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal Epimerase PF01370.21 gi|55377339|ref|YP_135189.1| - 2.9e-42 144.8 0.3 3.5e-42 144.5 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55377339|ref|YP_135189.1| - 1.1e-40 140.0 1.2 7.9e-40 137.3 1.2 2.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|55377339|ref|YP_135189.1| - 6e-11 41.9 1.0 2.5e-10 39.8 1.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55377339|ref|YP_135189.1| - 1.5e-10 40.6 0.4 1.9e-10 40.3 0.4 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|55377339|ref|YP_135189.1| - 1.3e-09 37.6 0.1 3.1e-06 26.5 0.0 2.4 3 0 0 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|55377339|ref|YP_135189.1| - 2.8e-07 30.0 0.2 9.9e-05 21.6 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|55377339|ref|YP_135189.1| - 0.11 12.0 1.0 0.54 9.7 0.1 2.2 1 1 1 2 2 2 0 short chain dehydrogenase KR PF08659.10 gi|55377339|ref|YP_135189.1| - 0.19 11.6 0.1 4.6 7.1 0.1 2.2 2 0 0 2 2 2 0 KR domain Arginase PF00491.21 gi|55377340|ref|YP_135190.1| - 8.7e-78 261.6 1.8 1e-77 261.4 1.8 1.0 1 0 0 1 1 1 1 Arginase family DNA_topoisoIV PF00521.20 gi|55377341|ref|YP_135191.1| - 6.1e-153 509.7 0.0 8.5e-153 509.2 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|55377341|ref|YP_135191.1| - 7.3e-76 249.5 10.5 2.1e-14 52.7 0.0 6.7 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller NTase_sub_bind PF08780.11 gi|55377341|ref|YP_135191.1| - 0.031 14.3 0.1 0.077 13.0 0.1 1.7 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like Nnf1 PF03980.14 gi|55377341|ref|YP_135191.1| - 0.11 12.8 2.2 5.2 7.5 1.1 2.5 2 0 0 2 2 2 0 Nnf1 Herpes_US12 PF05363.12 gi|55377341|ref|YP_135191.1| - 0.47 11.2 2.0 5.4 7.8 0.1 3.1 3 0 0 3 3 3 0 Herpesvirus US12 family DNA_gyraseB PF00204.25 gi|55377342|ref|YP_135192.1| - 3.4e-62 209.0 0.1 6.7e-62 208.0 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|55377342|ref|YP_135192.1| - 2.6e-30 104.4 0.0 5.4e-30 103.4 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|55377342|ref|YP_135192.1| - 3.8e-24 85.4 0.0 9.5e-24 84.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|55377342|ref|YP_135192.1| - 3.2e-18 65.9 0.0 1.6e-17 63.6 0.0 2.2 3 0 0 3 3 3 1 Toprim domain HATPase_c_3 PF13589.6 gi|55377342|ref|YP_135192.1| - 7.4e-05 22.6 0.0 0.00015 21.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.6 gi|55377342|ref|YP_135192.1| - 0.06 13.8 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 Toprim domain Topo-VIb_trans PF09239.11 gi|55377343|ref|YP_135193.1| - 1.7e-63 213.2 0.0 4e-63 212.0 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|55377343|ref|YP_135193.1| - 1.5e-36 125.0 5.5 4.7e-36 123.4 5.5 1.9 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|55377343|ref|YP_135193.1| - 1.1e-13 51.7 0.2 4.6e-13 49.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|55377343|ref|YP_135193.1| - 7.4e-11 42.0 0.0 1.8e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|55377343|ref|YP_135193.1| - 0.0028 17.6 3.5 0.0055 16.7 0.0 2.7 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain Dynamin_M PF01031.20 gi|55377343|ref|YP_135193.1| - 0.041 13.1 0.2 0.075 12.2 0.2 1.3 1 0 0 1 1 1 0 Dynamin central region MAF_flag10 PF01973.18 gi|55377343|ref|YP_135193.1| - 0.087 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF115 HATPase_c_5 PF14501.6 gi|55377343|ref|YP_135193.1| - 0.12 12.3 0.0 0.44 10.5 0.0 1.9 1 0 0 1 1 1 0 GHKL domain MecA_N PF05223.11 gi|55377343|ref|YP_135193.1| - 0.19 12.0 0.9 2.8 8.2 0.5 2.4 2 0 0 2 2 2 0 NTF2-like N-terminal transpeptidase domain TP6A_N PF04406.14 gi|55377344|ref|YP_135194.1| - 5e-15 55.2 0.4 8.5e-15 54.5 0.4 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|55377344|ref|YP_135194.1| - 0.036 13.9 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Circularly permutated YpsA SLOG family PQQ_2 PF13360.6 gi|55377345|ref|YP_135195.1| - 3.7e-33 115.1 30.5 1e-15 58.0 5.9 3.6 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|55377345|ref|YP_135195.1| - 2.2e-30 104.3 39.4 3.5e-05 24.1 0.0 9.2 9 0 0 9 9 9 8 PQQ-like domain PQQ PF01011.21 gi|55377345|ref|YP_135195.1| - 1e-13 50.5 16.1 0.0062 16.4 0.1 8.3 9 0 0 9 9 9 5 PQQ enzyme repeat Pepsin-I3 PF06394.13 gi|55377345|ref|YP_135195.1| - 0.096 12.9 0.2 22 5.3 0.1 3.1 2 1 1 3 3 3 0 Pepsin inhibitor-3-like repeated domain 2TM PF13239.6 gi|55377346|ref|YP_135196.1| - 0.93 9.8 3.9 1.4 9.3 0.3 2.1 1 1 1 2 2 2 0 2TM domain Lactamase_B_3 PF13483.6 gi|55377347|ref|YP_135197.1| - 1.2e-26 93.6 0.0 2.1e-26 92.8 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|55377347|ref|YP_135197.1| - 0.00061 19.4 1.1 0.00098 18.7 1.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DNA_ligase_A_M PF01068.21 gi|55377348|ref|YP_135198.1| - 7.3e-46 156.4 0.0 1e-45 155.9 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|55377348|ref|YP_135198.1| - 3.9e-34 118.5 0.0 7.6e-34 117.5 0.0 1.5 1 1 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|55377348|ref|YP_135198.1| - 1.1e-17 64.4 0.0 1e-16 61.3 0.0 2.5 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|55377348|ref|YP_135198.1| - 0.0065 16.8 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|55377348|ref|YP_135198.1| - 0.092 12.8 0.1 0.73 9.9 0.1 2.3 1 1 0 1 1 1 0 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.19 gi|55377348|ref|YP_135198.1| - 0.19 11.5 0.0 1.6 8.5 0.0 2.1 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain T2SSF PF00482.23 gi|55377349|ref|YP_135199.1| - 1.8e-37 128.1 13.1 1.6e-19 70.1 3.4 2.9 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|55377349|ref|YP_135199.1| - 0.0029 16.5 1.1 1.3 7.7 0.0 3.3 3 0 0 3 3 3 2 Predicted membrane protein (DUF2207) DUF1129 PF06570.11 gi|55377349|ref|YP_135199.1| - 0.014 14.9 1.8 0.55 9.7 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) 7TM_GPCR_Srw PF10324.9 gi|55377349|ref|YP_135199.1| - 0.072 12.4 0.4 0.14 11.4 0.0 1.6 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srw E1-E2_ATPase PF00122.20 gi|55377349|ref|YP_135199.1| - 0.082 12.4 3.7 0.28 10.7 0.3 2.9 2 0 0 2 2 2 0 E1-E2 ATPase DUF2721 PF11026.8 gi|55377349|ref|YP_135199.1| - 2.3 8.1 18.3 0.096 12.6 0.8 4.4 5 0 0 5 5 5 0 Protein of unknown function (DUF2721) DUF2116 PF09889.9 gi|55377349|ref|YP_135199.1| - 6.6 6.8 4.7 4.8 7.2 2.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) T2SSE PF00437.20 gi|55377350|ref|YP_135200.1| - 9.6e-48 162.6 0.0 1.3e-47 162.1 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein HTH_19 PF12844.7 gi|55377350|ref|YP_135200.1| - 0.036 14.1 1.1 0.26 11.3 0.2 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain Mg_chelatase PF01078.21 gi|55377350|ref|YP_135200.1| - 0.15 11.4 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PAS_4 PF08448.10 gi|55377352|ref|YP_135202.1| - 0.0071 16.6 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 PAS fold SIR2 PF02146.17 gi|55377353|ref|YP_135203.1| - 1.1e-42 146.0 0.0 1.6e-42 145.4 0.0 1.2 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|55377353|ref|YP_135203.1| - 0.0012 18.6 0.1 0.18 11.5 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain ATP-grasp_2 PF08442.10 gi|55377354|ref|YP_135204.1| - 1.5e-65 220.5 0.8 2.4e-65 219.9 0.8 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|55377354|ref|YP_135204.1| - 1.4e-21 77.0 3.8 1.4e-21 77.0 3.8 1.9 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|55377354|ref|YP_135204.1| - 5.9e-14 52.1 1.8 1.1e-11 44.7 0.7 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.19 gi|55377354|ref|YP_135204.1| - 2.5e-12 46.9 0.4 2.5e-12 46.9 0.4 2.1 3 0 0 3 3 3 1 CoA-ligase ATP-grasp PF02222.22 gi|55377354|ref|YP_135204.1| - 6.8e-09 35.5 0.1 1.2e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|55377354|ref|YP_135204.1| - 7.6e-07 29.1 0.5 1.6e-06 28.0 0.5 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|55377354|ref|YP_135204.1| - 0.0062 16.1 1.2 0.0062 16.1 1.2 2.1 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|55377354|ref|YP_135204.1| - 0.094 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain DUF4891 PF16232.5 gi|55377354|ref|YP_135204.1| - 0.12 13.0 0.0 0.39 11.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4891) CoA_binding PF02629.19 gi|55377355|ref|YP_135205.1| - 8.9e-24 84.0 1.1 8.9e-24 84.0 1.1 1.9 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|55377355|ref|YP_135205.1| - 5.1e-13 49.1 0.6 1.1e-12 48.1 0.6 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|55377355|ref|YP_135205.1| - 2e-09 37.3 0.0 4e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|55377355|ref|YP_135205.1| - 9.6e-06 26.1 0.0 6e-05 23.5 0.1 2.0 2 0 0 2 2 2 1 CoA binding domain HATPase_c PF02518.26 gi|55377356|ref|YP_135206.1| - 2.4e-15 57.0 0.0 3.7e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|55377356|ref|YP_135206.1| - 1.7e-05 24.7 0.1 4.3e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|55377356|ref|YP_135206.1| - 4.2e-05 23.5 0.2 0.00015 21.8 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|55377356|ref|YP_135206.1| - 0.0016 18.6 0.0 0.0026 17.9 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_3 PF13589.6 gi|55377356|ref|YP_135206.1| - 0.0055 16.5 0.0 0.013 15.3 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.15 gi|55377356|ref|YP_135206.1| - 0.16 12.2 0.2 4.5 7.6 0.0 2.3 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain zf-C2H2_jaz PF12171.8 gi|55377357|ref|YP_135207.1| - 0.0014 18.8 0.7 0.11 12.8 0.0 2.3 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.6 gi|55377357|ref|YP_135207.1| - 0.006 16.5 0.9 0.015 15.1 0.9 1.8 1 1 0 1 1 1 1 zinc-finger of a C2HC-type Zn_ribbon_recom PF13408.6 gi|55377357|ref|YP_135207.1| - 0.013 16.0 0.2 0.013 16.0 0.2 1.9 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain HNH_5 PF14279.6 gi|55377357|ref|YP_135207.1| - 0.021 14.7 1.6 3.6 7.5 0.2 2.2 1 1 1 2 2 2 0 HNH endonuclease DZR PF12773.7 gi|55377357|ref|YP_135207.1| - 0.032 14.2 5.7 0.19 11.7 5.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_11 PF16622.5 gi|55377357|ref|YP_135207.1| - 0.042 13.6 1.4 1.6 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-finger C2H2-type DNA_ligase_ZBD PF03119.16 gi|55377357|ref|YP_135207.1| - 0.086 12.9 1.9 0.3 11.2 2.1 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.26 gi|55377357|ref|YP_135207.1| - 0.14 12.6 9.7 0.62 10.6 1.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|55377357|ref|YP_135207.1| - 0.33 11.9 8.1 3.1 8.9 1.1 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C2H2_6 PF13912.6 gi|55377357|ref|YP_135207.1| - 0.44 10.6 8.5 0.7 10.0 0.7 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger HypA PF01155.19 gi|55377357|ref|YP_135207.1| - 0.5 10.4 5.3 0.44 10.6 1.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|55377357|ref|YP_135207.1| - 0.66 10.5 5.3 7.1 7.2 0.2 3.1 3 0 0 3 3 3 0 Zinc-finger double domain zinc_ribbon_10 PF10058.9 gi|55377357|ref|YP_135207.1| - 0.78 9.5 5.4 1.4 8.7 1.9 2.3 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-LITAF-like PF10601.9 gi|55377357|ref|YP_135207.1| - 0.89 9.9 6.7 5.4 7.4 0.1 2.4 3 0 0 3 3 2 0 LITAF-like zinc ribbon domain Trm112p PF03966.16 gi|55377357|ref|YP_135207.1| - 1.2 9.7 5.5 3 8.5 0.4 2.2 1 1 1 2 2 2 0 Trm112p-like protein zf_UBZ PF18439.1 gi|55377357|ref|YP_135207.1| - 1.5 8.5 6.0 3 7.5 0.1 2.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|55377357|ref|YP_135207.1| - 3.5 7.8 10.1 2 8.6 2.7 2.7 1 1 1 3 3 3 0 Zinc ribbon domain HATPase_c PF02518.26 gi|55377358|ref|YP_135208.1| - 4.1e-17 62.7 0.1 7e-17 61.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55377358|ref|YP_135208.1| - 1.2e-10 41.3 1.0 1.2e-10 41.3 1.0 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|55377358|ref|YP_135208.1| - 2.4e-06 27.2 1.9 4.4e-06 26.3 1.1 1.8 2 1 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|55377358|ref|YP_135208.1| - 5.6e-06 26.3 1.5 3.2e-05 23.9 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Phage_holin_3_6 PF07332.11 gi|55377358|ref|YP_135208.1| - 0.051 13.6 6.5 0.2 11.7 0.4 2.5 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III SPOB_a PF14689.6 gi|55377358|ref|YP_135208.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF418 PF04235.12 gi|55377358|ref|YP_135208.1| - 0.22 11.4 2.5 0.2 11.6 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF418) PSK_trans_fac PF07704.11 gi|55377358|ref|YP_135208.1| - 4.6 8.1 9.6 2.6 8.9 5.5 2.4 1 1 1 2 2 2 0 Rv0623-like transcription factor Polyketide_cyc2 PF10604.9 gi|55377359|ref|YP_135209.1| - 1.9e-05 24.9 3.9 2.5e-05 24.6 3.9 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|55377359|ref|YP_135209.1| - 0.0013 18.9 0.2 0.0019 18.4 0.2 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3931 PF13082.6 gi|55377359|ref|YP_135209.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) AHSA1 PF08327.11 gi|55377359|ref|YP_135209.1| - 0.21 11.8 2.0 2 8.6 1.8 2.2 1 1 1 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein ABC_tran PF00005.27 gi|55377360|ref|YP_135210.1| - 5.4e-29 101.5 0.0 1.1e-28 100.4 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|55377360|ref|YP_135210.1| - 1.7e-12 47.8 0.0 1e-05 25.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|55377360|ref|YP_135210.1| - 0.00026 21.7 0.4 0.0035 18.0 0.1 2.6 2 1 0 2 2 1 1 Domain of unknown function (DUF4162) SRP54 PF00448.22 gi|55377360|ref|YP_135210.1| - 0.00042 20.0 0.0 0.0014 18.3 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|55377360|ref|YP_135210.1| - 0.0012 19.4 0.8 0.0018 18.8 0.8 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55377360|ref|YP_135210.1| - 0.0042 16.8 0.1 0.0077 16.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|55377360|ref|YP_135210.1| - 0.006 16.3 0.0 0.038 13.7 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|55377360|ref|YP_135210.1| - 0.0076 16.0 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|55377360|ref|YP_135210.1| - 0.012 15.9 0.1 0.038 14.2 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|55377360|ref|YP_135210.1| - 0.03 14.0 0.1 0.14 11.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|55377360|ref|YP_135210.1| - 0.045 13.9 0.1 0.2 11.8 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|55377360|ref|YP_135210.1| - 0.086 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55377360|ref|YP_135210.1| - 0.093 13.0 0.8 0.28 11.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|55377360|ref|YP_135210.1| - 0.18 12.2 0.4 0.37 11.2 0.4 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|55377360|ref|YP_135210.1| - 0.2 11.6 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain ABC2_membrane_2 PF12679.7 gi|55377361|ref|YP_135211.1| - 0.00028 20.3 7.0 0.00028 20.3 7.0 3.9 4 1 0 4 4 4 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|55377361|ref|YP_135211.1| - 8.5 5.9 15.9 2.3 7.7 8.1 2.6 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|55377362|ref|YP_135212.1| - 2.9e-18 66.1 0.0 3.7e-18 65.8 0.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|55377362|ref|YP_135212.1| - 1.2e-09 37.9 3.8 1.4e-09 37.7 3.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|55377362|ref|YP_135212.1| - 7.4e-08 32.1 7.0 1.1e-07 31.6 7.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|55377362|ref|YP_135212.1| - 0.00099 19.1 8.0 0.0028 17.6 8.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|55377362|ref|YP_135212.1| - 0.0099 15.4 3.4 0.015 14.9 3.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Tetraspanin PF00335.20 gi|55377362|ref|YP_135212.1| - 2.2 7.9 4.0 4.3 7.0 4.0 1.4 1 0 0 1 1 1 0 Tetraspanin family Aldo_ket_red PF00248.21 gi|55377363|ref|YP_135213.1| - 2.6e-68 230.4 0.0 3.3e-68 230.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Cation_ATPase_C PF00689.21 gi|55377364|ref|YP_135214.1| - 0.46 10.2 4.0 0.54 9.9 4.0 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Macro PF01661.21 gi|55377365|ref|YP_135215.1| - 2.4e-31 108.2 0.1 3e-31 107.9 0.1 1.1 1 0 0 1 1 1 1 Macro domain DUF2071 PF09844.9 gi|55377366|ref|YP_135216.1| - 1.5e-75 253.4 0.0 1.7e-75 253.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|55377366|ref|YP_135216.1| - 3.1e-05 23.6 0.0 4.1e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) DUF2071 PF09844.9 gi|55377367|ref|YP_135217.1| - 5.3e-09 36.0 0.0 6e-09 35.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) Response_reg PF00072.24 gi|55377368|ref|YP_135218.1| - 1.1e-22 80.3 0.1 2.3e-22 79.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|55377368|ref|YP_135218.1| - 2.2e-15 56.4 0.0 7.2e-15 54.8 0.0 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|55377368|ref|YP_135218.1| - 5.2e-13 49.5 0.1 9.3e-13 48.7 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55377368|ref|YP_135218.1| - 4.3e-10 39.8 0.1 1.7e-09 37.9 0.0 2.1 1 1 1 2 2 2 1 PAS fold PAS PF00989.25 gi|55377368|ref|YP_135218.1| - 4.4e-06 26.7 0.0 1.1e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55377368|ref|YP_135218.1| - 4.5e-06 26.9 0.0 1.4e-05 25.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|55377368|ref|YP_135218.1| - 8.8e-05 22.4 0.0 0.0021 18.0 0.0 2.8 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|55377368|ref|YP_135218.1| - 0.0021 18.3 0.1 0.0068 16.7 0.0 1.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain B12-binding PF02310.19 gi|55377368|ref|YP_135218.1| - 0.0095 16.0 0.0 3.1 7.8 0.0 2.4 2 0 0 2 2 2 2 B12 binding domain HATPase_c_5 PF14501.6 gi|55377368|ref|YP_135218.1| - 0.012 15.6 0.0 0.066 13.1 0.0 2.1 2 0 0 2 2 2 0 GHKL domain GLTP PF08718.11 gi|55377368|ref|YP_135218.1| - 0.16 12.2 0.1 0.46 10.8 0.1 1.7 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) Hydrolase_like PF13242.6 gi|55377369|ref|YP_135219.1| - 6.1e-23 80.7 0.2 2.2e-22 78.9 0.0 2.0 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|55377369|ref|YP_135219.1| - 3e-22 78.6 0.0 6.9e-22 77.5 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55377369|ref|YP_135219.1| - 1.2e-07 32.3 0.1 5.9e-07 30.0 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|55377369|ref|YP_135219.1| - 4.5e-06 26.9 0.1 1.6e-05 25.1 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|55377369|ref|YP_135219.1| - 5.2e-05 22.9 0.2 0.00015 21.4 0.1 1.8 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|55377369|ref|YP_135219.1| - 0.0064 16.3 0.0 0.52 10.0 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase SplA PF11132.8 gi|55377369|ref|YP_135219.1| - 0.019 14.7 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator protein (SplA) Bse634I PF07832.11 gi|55377369|ref|YP_135219.1| - 0.27 10.5 0.0 0.42 9.9 0.0 1.2 1 0 0 1 1 1 0 Cfr10I/Bse634I restriction endonuclease DJ-1_PfpI PF01965.24 gi|55377370|ref|YP_135220.1| - 1.1e-53 181.5 0.0 1.2e-53 181.3 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|55377370|ref|YP_135220.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|55377370|ref|YP_135220.1| - 0.0071 16.1 0.0 0.043 13.5 0.0 1.9 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|55377370|ref|YP_135220.1| - 0.008 15.8 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Catalase_C PF18011.1 gi|55377370|ref|YP_135220.1| - 0.019 14.6 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain found in long catalases GATase_5 PF13507.6 gi|55377370|ref|YP_135220.1| - 0.038 13.1 0.0 0.049 12.7 0.0 1.4 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain zinc_ribbon_13 PF09855.9 gi|55377371|ref|YP_135221.1| - 4.8e-27 93.9 0.4 5.5e-27 93.7 0.4 1.1 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|55377371|ref|YP_135221.1| - 0.0013 18.1 3.8 0.43 10.1 0.6 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|55377371|ref|YP_135221.1| - 0.0022 17.9 1.5 1.1 9.3 0.1 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|55377371|ref|YP_135221.1| - 0.0041 17.4 0.5 0.007 16.7 0.5 1.4 1 1 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|55377371|ref|YP_135221.1| - 0.0051 16.5 3.2 1.2 9.0 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|55377371|ref|YP_135221.1| - 0.007 15.9 0.9 1.6 8.3 0.2 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DUF2387 PF09526.10 gi|55377371|ref|YP_135221.1| - 0.0084 16.2 0.0 0.44 10.7 0.0 2.0 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) DZR PF12773.7 gi|55377371|ref|YP_135221.1| - 0.016 15.2 0.2 0.027 14.5 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|55377371|ref|YP_135221.1| - 0.021 14.5 1.1 0.57 9.9 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|55377371|ref|YP_135221.1| - 0.029 14.5 0.4 2.1 8.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|55377371|ref|YP_135221.1| - 0.038 14.0 0.3 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-C2H2_3 PF13878.6 gi|55377371|ref|YP_135221.1| - 0.041 13.7 1.5 1.5 8.7 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO CpXC PF14353.6 gi|55377371|ref|YP_135221.1| - 0.05 13.7 2.4 0.32 11.0 2.4 1.9 1 1 1 2 2 2 0 CpXC protein zf-TFIIB PF13453.6 gi|55377371|ref|YP_135221.1| - 0.066 12.6 0.6 0.35 10.2 0.6 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|55377371|ref|YP_135221.1| - 0.07 13.1 1.8 0.59 10.1 1.8 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Spt4 PF06093.13 gi|55377371|ref|YP_135221.1| - 0.091 12.9 0.1 2.9 8.1 0.0 2.1 2 0 0 2 2 2 0 Spt4/RpoE2 zinc finger DUF2225 PF09986.9 gi|55377371|ref|YP_135221.1| - 0.18 11.5 1.1 0.36 10.5 1.2 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) TFIIS_C PF01096.18 gi|55377371|ref|YP_135221.1| - 0.2 11.6 4.0 6.8 6.6 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|55377371|ref|YP_135221.1| - 0.28 11.1 4.4 5.1 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|55377371|ref|YP_135221.1| - 0.37 10.9 2.8 5.9 7.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OppC_N PF12911.7 gi|55377372|ref|YP_135222.1| - 0.072 13.1 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C DUF3989 PF13150.6 gi|55377372|ref|YP_135222.1| - 0.086 12.6 0.2 0.099 12.4 0.2 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3989) MTH865 PF07747.11 gi|55377373|ref|YP_135223.1| - 2.4e-29 100.9 0.2 3e-29 100.6 0.2 1.1 1 0 0 1 1 1 1 MTH865-like family BatA PF07584.11 gi|55377374|ref|YP_135224.1| - 0.031 14.6 0.4 0.032 14.6 0.4 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal FixS PF03597.15 gi|55377374|ref|YP_135224.1| - 0.043 13.5 0.6 0.05 13.3 0.6 1.1 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Papilloma_E5A PF05776.12 gi|55377374|ref|YP_135224.1| - 0.068 13.5 0.1 0.068 13.5 0.1 1.1 1 0 0 1 1 1 0 Papillomavirus E5A protein Fe_dep_repr_C PF02742.15 gi|55377375|ref|YP_135225.1| - 3.5e-30 103.9 1.6 6.1e-30 103.1 1.6 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|55377375|ref|YP_135225.1| - 3e-20 72.1 0.3 1.3e-19 70.2 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|55377375|ref|YP_135225.1| - 8.9e-16 57.9 0.5 2.9e-15 56.3 0.1 2.0 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|55377375|ref|YP_135225.1| - 2.5e-08 33.7 0.0 6.5e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55377375|ref|YP_135225.1| - 2.1e-07 30.7 0.0 5e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55377375|ref|YP_135225.1| - 2.6e-05 24.0 0.0 6e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|55377375|ref|YP_135225.1| - 0.00014 22.3 0.0 0.00039 20.9 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|55377375|ref|YP_135225.1| - 0.00016 21.6 0.0 0.00038 20.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|55377375|ref|YP_135225.1| - 0.00017 21.1 0.0 0.00069 19.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|55377375|ref|YP_135225.1| - 0.0018 18.1 0.1 0.016 15.0 0.0 2.4 2 1 1 3 3 3 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|55377375|ref|YP_135225.1| - 0.0022 18.1 0.0 0.0047 17.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|55377375|ref|YP_135225.1| - 0.005 17.2 0.0 0.012 15.9 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|55377375|ref|YP_135225.1| - 0.0082 15.8 0.0 0.062 13.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Topoisom_bac PF01131.20 gi|55377375|ref|YP_135225.1| - 0.0083 15.2 0.1 0.012 14.6 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase HTH_20 PF12840.7 gi|55377375|ref|YP_135225.1| - 0.013 15.5 0.0 0.034 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.8 gi|55377375|ref|YP_135225.1| - 0.096 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain UPF0016 PF01169.19 gi|55377376|ref|YP_135226.1| - 1.9e-16 60.1 5.1 1.9e-16 60.1 5.1 1.7 2 0 0 2 2 2 1 Uncharacterized protein family UPF0016 LPAM_1 PF08139.12 gi|55377377|ref|YP_135227.1| - 0.0077 16.7 0.7 0.017 15.6 0.7 1.6 1 0 0 1 1 1 1 Prokaryotic membrane lipoprotein lipid attachment site BACON PF13004.7 gi|55377377|ref|YP_135227.1| - 0.77 9.8 5.1 11 6.1 2.0 2.4 1 1 1 2 2 2 0 Putative binding domain, N-terminal ABC-3 PF00950.17 gi|55377378|ref|YP_135228.1| - 6.5e-60 202.8 41.5 7.6e-60 202.6 41.5 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|55377378|ref|YP_135228.1| - 6e-05 22.2 38.3 6e-05 22.2 38.3 1.7 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.6 gi|55377378|ref|YP_135228.1| - 0.08 13.1 0.5 0.25 11.5 0.5 1.8 1 0 0 1 1 1 0 DUF2407 C-terminal domain ABC_tran PF00005.27 gi|55377379|ref|YP_135229.1| - 4.8e-30 104.9 0.0 7.2e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377379|ref|YP_135229.1| - 8.7e-12 45.5 0.3 3e-05 24.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377379|ref|YP_135229.1| - 7.8e-05 22.2 0.0 0.0087 15.5 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55377379|ref|YP_135229.1| - 0.00013 21.6 0.1 0.00028 20.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55377379|ref|YP_135229.1| - 0.0006 20.2 0.2 0.0013 19.2 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|55377379|ref|YP_135229.1| - 0.00068 19.5 0.0 0.00091 19.0 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|55377379|ref|YP_135229.1| - 0.0016 18.2 0.4 0.0078 16.0 0.4 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|55377379|ref|YP_135229.1| - 0.0054 16.8 0.0 0.011 15.9 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|55377379|ref|YP_135229.1| - 0.0057 16.9 0.1 0.019 15.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|55377379|ref|YP_135229.1| - 0.0097 16.4 0.0 0.015 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|55377379|ref|YP_135229.1| - 0.026 14.8 0.2 0.76 10.0 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.21 gi|55377379|ref|YP_135229.1| - 0.026 13.9 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|55377379|ref|YP_135229.1| - 0.026 14.7 0.1 0.055 13.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|55377379|ref|YP_135229.1| - 0.027 14.4 0.0 0.047 13.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|55377379|ref|YP_135229.1| - 0.03 14.3 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|55377379|ref|YP_135229.1| - 0.031 13.8 0.3 0.16 11.5 0.3 2.2 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|55377379|ref|YP_135229.1| - 0.036 14.2 0.0 0.062 13.4 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain NTPase_1 PF03266.15 gi|55377379|ref|YP_135229.1| - 0.04 13.8 0.0 0.15 11.9 0.0 1.8 1 1 0 2 2 2 0 NTPase ABC_ATPase PF09818.9 gi|55377379|ref|YP_135229.1| - 0.041 12.7 0.1 6.8 5.4 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_5 PF07728.14 gi|55377379|ref|YP_135229.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|55377379|ref|YP_135229.1| - 0.11 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AFG1_ATPase PF03969.16 gi|55377379|ref|YP_135229.1| - 0.15 10.9 0.0 1.3 7.8 0.0 1.9 2 0 0 2 2 2 0 AFG1-like ATPase FtsK_SpoIIIE PF01580.18 gi|55377379|ref|YP_135229.1| - 0.16 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family RNA_helicase PF00910.22 gi|55377379|ref|YP_135229.1| - 0.2 12.1 0.0 0.39 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|55377379|ref|YP_135229.1| - 0.22 11.3 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Spore_IV_A PF09547.10 gi|55377379|ref|YP_135229.1| - 0.25 10.3 0.0 0.35 9.7 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) ZnuA PF01297.17 gi|55377380|ref|YP_135230.1| - 2e-40 138.8 0.0 2.6e-40 138.5 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic Bacteriocin_II PF01721.18 gi|55377380|ref|YP_135230.1| - 0.039 14.1 0.0 0.093 12.8 0.0 1.7 1 0 0 1 1 1 0 Class II bacteriocin HTH_24 PF13412.6 gi|55377381|ref|YP_135231.1| - 7.8e-16 57.4 0.1 1.3e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55377381|ref|YP_135231.1| - 9.1e-15 54.2 3.3 9.1e-15 54.2 3.3 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|55377381|ref|YP_135231.1| - 1.5e-07 31.2 0.1 1.3e-06 28.2 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|55377381|ref|YP_135231.1| - 1.3e-05 25.1 0.1 2.8e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|55377381|ref|YP_135231.1| - 2.4e-05 24.2 0.0 3.5e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55377381|ref|YP_135231.1| - 4.8e-05 23.2 0.0 0.00027 20.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|55377381|ref|YP_135231.1| - 6.7e-05 22.7 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Ta0938 PF11494.8 gi|55377381|ref|YP_135231.1| - 0.00013 22.2 1.1 0.0002 21.6 1.1 1.3 1 0 0 1 1 1 1 Ta0938 HTH_27 PF13463.6 gi|55377381|ref|YP_135231.1| - 0.00049 20.5 0.1 0.0012 19.2 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|55377381|ref|YP_135231.1| - 0.0014 18.0 0.2 0.004 16.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 gi|55377381|ref|YP_135231.1| - 0.0015 18.3 0.0 0.0038 17.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|55377381|ref|YP_135231.1| - 0.0043 17.2 0.0 0.0096 16.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain YHS PF04945.13 gi|55377381|ref|YP_135231.1| - 0.0054 16.8 1.9 0.0096 16.0 1.9 1.3 1 0 0 1 1 1 1 YHS domain HTH_23 PF13384.6 gi|55377381|ref|YP_135231.1| - 0.011 15.5 0.0 0.026 14.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|55377381|ref|YP_135231.1| - 0.064 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 ATPase-cat_bd PF12156.8 gi|55377381|ref|YP_135231.1| - 0.085 13.6 2.4 0.15 12.8 2.4 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Arc_trans_TRASH PF08394.10 gi|55377381|ref|YP_135231.1| - 0.089 13.1 2.2 0.16 12.3 2.2 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain HTH_28 PF13518.6 gi|55377381|ref|YP_135231.1| - 0.16 12.1 0.0 0.43 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|55377381|ref|YP_135231.1| - 0.2 11.8 0.0 0.9 9.7 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Shisa PF13908.6 gi|55377381|ref|YP_135231.1| - 0.84 9.9 4.9 1.2 9.3 4.9 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator E1-E2_ATPase PF00122.20 gi|55377382|ref|YP_135232.1| - 1e-49 168.5 1.8 2.6e-49 167.2 1.8 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55377382|ref|YP_135232.1| - 1.8e-43 149.3 7.1 4.4e-43 148.0 7.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55377382|ref|YP_135232.1| - 7e-28 96.9 0.2 9.1e-15 54.9 0.0 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|55377382|ref|YP_135232.1| - 8.1e-05 22.5 0.7 0.028 14.2 1.3 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55377382|ref|YP_135232.1| - 0.00041 20.8 0.6 0.0025 18.2 0.5 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase ABC1 PF03109.16 gi|55377383|ref|YP_135233.1| - 2e-26 92.5 0.0 5.4e-26 91.1 0.0 1.7 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|55377383|ref|YP_135233.1| - 0.00012 22.1 0.5 0.001 19.1 0.5 2.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family Gram_pos_anchor PF00746.21 gi|55377383|ref|YP_135233.1| - 0.68 9.9 2.2 1.4 8.9 2.2 1.5 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DPRP PF04244.13 gi|55377384|ref|YP_135234.1| - 1.6e-57 194.9 0.0 3.1e-57 194.0 0.0 1.5 1 1 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein Copper-bind PF00127.20 gi|55377385|ref|YP_135235.1| - 1.4e-16 60.7 1.3 2.1e-16 60.2 0.1 1.9 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|55377385|ref|YP_135235.1| - 7.1e-06 25.6 1.9 7.1e-06 25.6 1.9 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF5627 PF18620.1 gi|55377385|ref|YP_135235.1| - 0.039 13.8 0.2 0.064 13.1 0.2 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5627) Cu-oxidase_3 PF07732.15 gi|55377385|ref|YP_135235.1| - 0.099 12.7 0.6 0.2 11.7 0.2 1.8 2 1 0 2 2 2 0 Multicopper oxidase DUF3523 PF12037.8 gi|55377386|ref|YP_135236.1| - 1 8.7 1.9 1.4 8.2 1.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3523) Copper-bind PF00127.20 gi|55377387|ref|YP_135237.1| - 1.3e-21 76.9 0.0 1.9e-14 53.9 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|55377387|ref|YP_135237.1| - 0.0005 19.8 1.6 0.0015 18.3 1.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence FAA_hydrolase PF01557.18 gi|55377388|ref|YP_135238.1| - 7.9e-67 225.1 0.0 9.4e-67 224.9 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|55377388|ref|YP_135238.1| - 0.0016 19.3 0.2 0.0044 17.9 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) PDH PF02153.17 gi|55377389|ref|YP_135239.1| - 2.6e-12 46.3 1.9 3.1e-11 42.8 1.9 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|55377389|ref|YP_135239.1| - 1.4e-05 25.6 0.8 1.4e-05 25.6 0.8 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|55377389|ref|YP_135239.1| - 6.5e-05 23.7 2.6 6.7e-05 23.7 0.5 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|55377389|ref|YP_135239.1| - 0.00038 20.6 0.4 0.00038 20.6 0.4 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|55377389|ref|YP_135239.1| - 0.0016 18.3 3.7 0.0056 16.6 0.9 2.5 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|55377389|ref|YP_135239.1| - 0.008 16.4 1.7 0.022 15.0 0.1 2.3 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|55377389|ref|YP_135239.1| - 0.011 15.0 0.1 0.021 14.2 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|55377389|ref|YP_135239.1| - 0.03 13.9 0.4 0.16 11.6 0.5 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|55377389|ref|YP_135239.1| - 0.13 11.8 0.2 0.13 11.8 0.2 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|55377389|ref|YP_135239.1| - 0.65 10.7 9.5 0.075 13.7 1.4 2.8 2 1 1 3 3 3 0 CoA binding domain Methyltransf_12 PF08242.12 gi|55377390|ref|YP_135240.1| - 2.7e-08 34.5 0.1 8e-08 32.9 0.1 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377390|ref|YP_135240.1| - 0.00013 21.9 0.0 0.00027 20.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|55377390|ref|YP_135240.1| - 0.0037 16.6 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 SurE PF01975.17 gi|55377391|ref|YP_135241.1| - 1.2e-44 152.4 0.5 1.6e-44 152.1 0.5 1.1 1 0 0 1 1 1 1 Survival protein SurE EamA PF00892.20 gi|55377392|ref|YP_135242.1| - 7.1e-38 129.9 29.8 6.9e-20 71.6 11.7 2.0 2 0 0 2 2 2 2 EamA-like transporter family DHHA1 PF02272.19 gi|55377393|ref|YP_135243.1| - 4.2e-13 49.9 0.5 8.7e-13 48.9 0.5 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|55377393|ref|YP_135243.1| - 7.1e-13 48.4 0.3 1.3e-12 47.6 0.3 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|55377393|ref|YP_135243.1| - 1.1e-10 40.7 0.1 1.6e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) CcmH PF03918.14 gi|55377394|ref|YP_135244.1| - 0.009 15.3 0.1 0.0091 15.3 0.1 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein HypA PF01155.19 gi|55377395|ref|YP_135245.1| - 7.4e-05 22.7 0.3 8.3e-05 22.6 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|55377395|ref|YP_135245.1| - 0.00042 20.3 0.4 0.00043 20.2 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55377395|ref|YP_135245.1| - 0.00047 19.5 1.6 0.00061 19.1 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|55377395|ref|YP_135245.1| - 0.0019 18.9 0.2 0.002 18.8 0.2 1.1 1 0 0 1 1 1 1 zinc-ribbon family RNA_POL_M_15KD PF02150.16 gi|55377395|ref|YP_135245.1| - 0.0031 17.3 0.6 0.043 13.7 0.0 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|55377395|ref|YP_135245.1| - 0.0034 17.1 2.6 0.0048 16.6 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55377395|ref|YP_135245.1| - 0.004 17.2 4.1 0.011 15.9 4.1 1.9 1 1 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|55377395|ref|YP_135245.1| - 0.004 17.1 1.2 0.55 10.2 0.0 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Ribosomal_L37e PF01907.19 gi|55377395|ref|YP_135245.1| - 0.0057 16.8 3.1 0.0092 16.1 3.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L37e zf-C3HC4_2 PF13923.6 gi|55377395|ref|YP_135245.1| - 0.013 15.3 0.4 0.015 15.1 0.4 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_3 PF13920.6 gi|55377395|ref|YP_135245.1| - 0.017 15.0 0.4 0.018 14.9 0.4 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.6 gi|55377395|ref|YP_135245.1| - 0.018 15.0 0.5 0.019 14.9 0.5 1.1 1 0 0 1 1 1 0 zinc-RING finger domain TF_Zn_Ribbon PF08271.12 gi|55377395|ref|YP_135245.1| - 0.019 14.5 1.4 1.1 8.8 0.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|55377395|ref|YP_135245.1| - 0.019 14.6 4.3 0.65 9.7 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TackOD1 PF18551.1 gi|55377395|ref|YP_135245.1| - 0.02 14.6 0.8 0.029 14.1 0.8 1.3 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 ChpA-C PF03777.13 gi|55377395|ref|YP_135245.1| - 0.033 14.1 0.1 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 ChpA-C zf-FPG_IleRS PF06827.14 gi|55377395|ref|YP_135245.1| - 0.073 12.9 3.1 0.099 12.5 0.3 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS NRDD PF13597.6 gi|55377395|ref|YP_135245.1| - 0.12 11.2 1.4 0.13 11.0 1.4 1.2 1 1 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase UPF0547 PF10571.9 gi|55377395|ref|YP_135245.1| - 0.13 12.4 1.8 0.19 11.8 1.8 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|55377395|ref|YP_135245.1| - 0.15 12.0 4.7 0.4 10.6 4.7 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.11 gi|55377395|ref|YP_135245.1| - 0.15 12.0 3.2 0.19 11.7 0.8 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|55377395|ref|YP_135245.1| - 0.2 12.0 4.9 0.31 11.4 0.7 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF2688 PF10892.8 gi|55377395|ref|YP_135245.1| - 0.8 9.2 6.5 0.29 10.6 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) HD PF01966.22 gi|55377397|ref|YP_135247.1| - 2.3e-08 34.3 4.5 2.9e-08 34.0 3.4 1.7 2 0 0 2 2 2 1 HD domain AhpC-TSA PF00578.21 gi|55377398|ref|YP_135248.1| - 4.5e-32 110.6 0.0 5.3e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55377398|ref|YP_135248.1| - 6.9e-23 81.0 0.0 7.8e-23 80.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|55377398|ref|YP_135248.1| - 0.00031 20.8 0.0 0.0053 16.9 0.0 2.0 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|55377398|ref|YP_135248.1| - 0.0006 19.4 0.0 0.00081 19.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) MttA_Hcf106 PF02416.16 gi|55377400|ref|YP_135250.1| - 7.7e-15 54.0 0.0 8.5e-15 53.8 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family DUF4148 PF13663.6 gi|55377400|ref|YP_135250.1| - 0.021 15.0 0.0 0.028 14.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) MAP17 PF15807.5 gi|55377400|ref|YP_135250.1| - 0.1 12.9 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 GMC_oxred_C PF05199.13 gi|55377401|ref|YP_135251.1| - 6.8e-24 85.0 1.6 2.4e-23 83.2 1.6 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|55377401|ref|YP_135251.1| - 3.4e-19 69.3 0.0 7.7e-19 68.2 0.0 1.6 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.24 gi|55377401|ref|YP_135251.1| - 1.8e-08 34.4 4.1 4.6e-07 29.8 3.2 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|55377401|ref|YP_135251.1| - 2.5e-08 33.4 1.2 0.0031 16.7 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|55377401|ref|YP_135251.1| - 8.5e-06 25.2 0.2 0.00044 19.6 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|55377401|ref|YP_135251.1| - 6e-05 21.9 0.2 0.00067 18.5 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|55377401|ref|YP_135251.1| - 0.00013 21.1 0.1 0.0002 20.5 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|55377401|ref|YP_135251.1| - 0.00014 22.0 0.0 0.00037 20.6 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|55377401|ref|YP_135251.1| - 0.00058 19.2 0.1 0.0049 16.1 0.0 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_7 PF12838.7 gi|55377401|ref|YP_135251.1| - 0.037 14.6 0.8 0.075 13.6 0.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Thi4 PF01946.17 gi|55377401|ref|YP_135251.1| - 0.049 12.9 0.0 0.088 12.0 0.0 1.3 1 0 0 1 1 1 0 Thi4 family FAD_oxidored PF12831.7 gi|55377401|ref|YP_135251.1| - 0.051 12.9 0.8 0.08 12.3 0.8 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|55377401|ref|YP_135251.1| - 0.09 12.0 0.0 0.23 10.7 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|55377401|ref|YP_135251.1| - 0.14 12.2 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Fer4_3 PF12798.7 gi|55377401|ref|YP_135251.1| - 0.91 10.6 3.1 2.2 9.4 3.1 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain YdjM PF04307.14 gi|55377402|ref|YP_135252.1| - 1.3e-10 40.9 6.8 2.2e-10 40.1 6.8 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3017 PF11222.8 gi|55377402|ref|YP_135252.1| - 1.7 8.9 9.3 0.21 11.9 3.4 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3017) CopD PF05425.13 gi|55377403|ref|YP_135253.1| - 0.00017 21.9 3.1 0.00017 21.9 3.1 1.9 2 0 0 2 2 2 1 Copper resistance protein D DUF3742 PF12553.8 gi|55377403|ref|YP_135253.1| - 0.034 14.3 0.4 0.11 12.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) CheX PF13690.6 gi|55377404|ref|YP_135254.1| - 1.6e-09 37.8 0.1 4.4e-09 36.4 0.1 1.7 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX CheC PF04509.12 gi|55377404|ref|YP_135254.1| - 7.3e-09 35.4 2.3 1.2e-08 34.7 0.5 2.3 3 0 0 3 3 3 1 CheC-like family Aminotran_1_2 PF00155.21 gi|55377405|ref|YP_135255.1| - 1.7e-63 215.0 0.0 2e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|55377405|ref|YP_135255.1| - 1.8e-05 23.8 0.0 3.1e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Allinase CDP-OH_P_transf PF01066.21 gi|55377407|ref|YP_135257.1| - 2.5e-08 34.6 0.5 2.5e-08 34.6 0.5 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF1118 PF06549.12 gi|55377407|ref|YP_135257.1| - 0.065 13.6 1.9 0.15 12.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1118) DUF4051 PF13260.6 gi|55377407|ref|YP_135257.1| - 0.068 12.9 0.9 0.14 11.9 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) OrfB_IS605 PF01385.19 gi|55377408|ref|YP_135258.1| - 2.6e-19 69.6 1.2 1.2e-18 67.4 0.2 2.1 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|55377408|ref|YP_135258.1| - 1.2e-18 66.8 0.7 2.2e-18 65.9 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|55377408|ref|YP_135258.1| - 0.00062 19.2 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.19 gi|55377408|ref|YP_135258.1| - 0.064 13.3 0.2 0.098 12.7 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_3 PF01381.22 gi|55377409|ref|YP_135259.1| - 6.7e-10 38.9 1.7 9.2e-10 38.4 1.7 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|55377409|ref|YP_135259.1| - 9.1e-08 32.3 0.1 1.5e-07 31.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|55377409|ref|YP_135259.1| - 7.6e-07 29.1 0.4 1.2e-06 28.4 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|55377409|ref|YP_135259.1| - 1.7e-05 24.6 0.4 2.6e-05 24.0 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain COPR5 PF15340.6 gi|55377409|ref|YP_135259.1| - 0.0058 17.3 1.0 0.0081 16.8 1.0 1.2 1 0 0 1 1 1 1 Cooperator of PRMT5 family HTH_37 PF13744.6 gi|55377409|ref|YP_135259.1| - 0.019 14.9 0.1 0.035 14.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Pox_A12 PF04651.13 gi|55377409|ref|YP_135259.1| - 0.024 14.7 4.3 0.035 14.2 4.3 1.3 1 0 0 1 1 1 0 Poxvirus A12 protein HTH_38 PF13936.6 gi|55377409|ref|YP_135259.1| - 0.059 13.2 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DZR PF12773.7 gi|55377409|ref|YP_135259.1| - 0.096 12.7 0.6 0.16 12.0 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon JUPITER PF17054.5 gi|55377409|ref|YP_135259.1| - 0.11 12.0 5.5 0.12 11.8 5.5 1.1 1 0 0 1 1 1 0 Microtubule-Associated protein Jupiter RAP1 PF07218.11 gi|55377409|ref|YP_135259.1| - 0.25 9.6 6.6 0.27 9.5 6.6 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) SR-25 PF10500.9 gi|55377409|ref|YP_135259.1| - 0.59 9.7 22.7 0.41 10.2 21.5 1.4 1 1 0 1 1 1 0 Nuclear RNA-splicing-associated protein Macoilin PF09726.9 gi|55377409|ref|YP_135259.1| - 2 6.9 7.8 2.2 6.7 7.8 1.1 1 0 0 1 1 1 0 Macoilin family PI3K_1B_p101 PF10486.9 gi|55377409|ref|YP_135259.1| - 2.7 5.7 13.9 5.1 4.7 13.5 1.5 1 1 1 2 2 2 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit Apt1 PF10351.9 gi|55377409|ref|YP_135259.1| - 8.8 5.1 10.6 10 4.8 10.6 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Response_reg PF00072.24 gi|55377410|ref|YP_135260.1| - 2.1e-18 66.5 1.0 3.5e-18 65.8 1.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|55377410|ref|YP_135260.1| - 2.9e-13 49.9 7.8 2.9e-13 49.9 7.8 1.9 1 1 0 1 1 1 1 HalX domain CorA PF01544.18 gi|55377410|ref|YP_135260.1| - 0.056 12.7 3.3 0.083 12.2 3.3 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SchA_CurD PF04486.12 gi|55377410|ref|YP_135260.1| - 0.061 13.4 0.7 0.29 11.3 0.1 2.2 2 1 0 2 2 2 0 SchA/CurD like domain TIM PF00121.18 gi|55377411|ref|YP_135261.1| - 1.2e-07 31.4 0.1 2.6e-07 30.3 0.0 1.5 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.14 gi|55377411|ref|YP_135261.1| - 0.0001 21.7 1.0 0.0001 21.7 1.0 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|55377411|ref|YP_135261.1| - 0.0075 15.3 3.2 0.0075 15.3 3.2 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|55377411|ref|YP_135261.1| - 0.16 11.1 0.1 0.67 9.1 0.0 2.1 1 1 1 2 2 2 0 Indole-3-glycerol phosphate synthase DUF87 PF01935.17 gi|55377412|ref|YP_135262.1| - 2.3e-13 50.8 4.1 5e-13 49.7 0.0 2.8 3 0 0 3 3 3 1 Helicase HerA, central domain DUF853 PF05872.12 gi|55377412|ref|YP_135262.1| - 0.00016 20.4 3.7 0.001 17.8 0.0 2.6 3 0 0 3 3 2 1 Bacterial protein of unknown function (DUF853) APS_kinase PF01583.20 gi|55377412|ref|YP_135262.1| - 0.0014 18.6 0.2 0.059 13.3 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase CbiA PF01656.23 gi|55377412|ref|YP_135262.1| - 0.0018 18.3 0.0 0.0037 17.3 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_13 PF13166.6 gi|55377412|ref|YP_135262.1| - 0.0048 15.6 3.4 0.0089 14.7 3.4 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55377412|ref|YP_135262.1| - 0.01 16.3 0.6 0.17 12.3 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) EzrA PF06160.12 gi|55377412|ref|YP_135262.1| - 0.01 14.1 3.2 0.018 13.3 3.2 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4763 PF15960.5 gi|55377412|ref|YP_135262.1| - 0.01 15.1 1.2 0.024 14.0 1.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Med9 PF07544.13 gi|55377412|ref|YP_135262.1| - 0.01 15.9 3.4 0.025 14.7 3.4 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 zf-C4H2 PF10146.9 gi|55377412|ref|YP_135262.1| - 0.012 15.9 1.6 0.021 15.1 1.6 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein AAA_16 PF13191.6 gi|55377412|ref|YP_135262.1| - 0.013 15.9 5.7 0.028 14.8 0.1 3.3 3 1 0 3 3 3 0 AAA ATPase domain AAA_10 PF12846.7 gi|55377412|ref|YP_135262.1| - 0.016 14.2 2.4 0.071 12.0 0.0 2.6 2 1 1 3 3 3 0 AAA-like domain AAA_18 PF13238.6 gi|55377412|ref|YP_135262.1| - 0.02 15.4 0.9 0.064 13.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain HMMR_N PF15905.5 gi|55377412|ref|YP_135262.1| - 0.021 14.3 8.6 0.038 13.5 8.6 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal TMF_DNA_bd PF12329.8 gi|55377412|ref|YP_135262.1| - 0.024 14.6 6.2 0.083 12.9 6.2 2.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding FTA4 PF13093.6 gi|55377412|ref|YP_135262.1| - 0.03 14.2 2.7 0.021 14.7 0.8 1.8 2 0 0 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 JIP_LZII PF16471.5 gi|55377412|ref|YP_135262.1| - 0.038 14.2 6.3 0.12 12.6 6.3 1.9 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Fib_alpha PF08702.10 gi|55377412|ref|YP_135262.1| - 0.058 13.6 0.4 0.15 12.2 0.4 1.8 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|55377412|ref|YP_135262.1| - 0.11 12.6 7.6 0.083 13.0 5.8 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus SKA1 PF07160.12 gi|55377412|ref|YP_135262.1| - 0.11 12.3 4.4 0.26 11.1 4.4 1.6 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 DUF3496 PF12001.8 gi|55377412|ref|YP_135262.1| - 0.11 12.8 1.7 0.26 11.7 1.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) Zot PF05707.12 gi|55377412|ref|YP_135262.1| - 0.14 11.8 0.2 2 8.0 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Atg14 PF10186.9 gi|55377412|ref|YP_135262.1| - 0.21 10.6 2.4 0.35 9.9 2.4 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CLZ PF16526.5 gi|55377412|ref|YP_135262.1| - 0.29 11.5 6.4 1.8 8.9 4.2 3.1 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3450 PF11932.8 gi|55377412|ref|YP_135262.1| - 0.34 10.2 9.0 0.83 8.9 9.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|55377412|ref|YP_135262.1| - 0.49 9.2 9.4 0.86 8.4 9.4 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.19 gi|55377412|ref|YP_135262.1| - 0.55 8.1 3.0 0.81 7.5 3.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.13 gi|55377412|ref|YP_135262.1| - 0.63 9.6 1.8 0.8 9.2 0.7 1.7 2 0 0 2 2 1 0 fzo-like conserved region Hpr_kinase_C PF07475.12 gi|55377412|ref|YP_135262.1| - 0.66 9.5 2.3 12 5.4 0.1 2.2 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF724 PF05266.14 gi|55377412|ref|YP_135262.1| - 1.4 8.8 7.0 2.6 7.8 7.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DLP_helical PF18709.1 gi|55377412|ref|YP_135262.1| - 1.9 7.6 7.2 0.7 9.0 2.3 2.2 2 0 0 2 2 2 0 Dynamin-like helical domain RPW8 PF05659.11 gi|55377412|ref|YP_135262.1| - 3.5 7.3 5.2 1.1 8.9 1.3 2.0 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DivIC PF04977.15 gi|55377412|ref|YP_135262.1| - 4.1 7.2 9.3 1.4 8.8 5.7 2.1 2 0 0 2 2 1 0 Septum formation initiator Spc24 PF08286.11 gi|55377412|ref|YP_135262.1| - 4.6 7.5 7.9 1.3 9.3 4.0 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF2203 PF09969.9 gi|55377412|ref|YP_135262.1| - 6.3 7.5 6.7 34 5.2 5.0 2.8 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) IMS PF00817.20 gi|55377414|ref|YP_135264.1| - 1.8e-40 138.4 0.4 2.9e-40 137.7 0.4 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|55377414|ref|YP_135264.1| - 4.1e-12 46.8 0.0 7.7e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|55377414|ref|YP_135264.1| - 1.6e-06 28.1 0.0 3.2e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|55377414|ref|YP_135264.1| - 0.00012 22.6 0.0 0.00035 21.1 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|55377414|ref|YP_135264.1| - 0.00015 21.5 0.0 0.0036 17.1 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF1805 PF08827.11 gi|55377414|ref|YP_135264.1| - 0.019 15.3 1.5 0.065 13.6 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1805) Cdd1 PF11731.8 gi|55377414|ref|YP_135264.1| - 0.026 14.7 0.0 0.057 13.7 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus Methyltransf_11 PF08241.12 gi|55377416|ref|YP_135266.1| - 2.5e-18 66.5 0.2 4.4e-18 65.7 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55377416|ref|YP_135266.1| - 3.3e-17 63.0 0.2 7.1e-17 61.9 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55377416|ref|YP_135266.1| - 3e-09 36.8 0.0 3.8e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377416|ref|YP_135266.1| - 1.3e-08 34.9 0.0 1.6e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55377416|ref|YP_135266.1| - 2.2e-08 34.7 0.1 4.5e-08 33.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55377416|ref|YP_135266.1| - 0.00027 20.4 0.0 0.00035 20.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|55377416|ref|YP_135266.1| - 0.00047 19.8 0.0 0.00065 19.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.15 gi|55377416|ref|YP_135266.1| - 0.049 13.5 0.0 0.076 12.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|55377416|ref|YP_135266.1| - 0.11 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) tRNA-synt_1b PF00579.25 gi|55377417|ref|YP_135267.1| - 6.6e-59 199.6 0.0 8e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DDE_Tnp_IS240 PF13610.6 gi|55377418|ref|YP_135268.1| - 1.3e-14 54.6 0.1 1.9e-14 54.1 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|55377418|ref|YP_135268.1| - 0.00043 20.5 0.1 0.0007 19.8 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|55377418|ref|YP_135268.1| - 0.019 14.5 0.3 0.019 14.5 0.3 2.0 2 1 0 2 2 2 0 Transposase IS66 family DDE_3 PF13358.6 gi|55377418|ref|YP_135268.1| - 0.11 12.2 0.0 0.33 10.7 0.0 1.8 1 1 0 1 1 1 0 DDE superfamily endonuclease HTH_28 PF13518.6 gi|55377418|ref|YP_135268.1| - 0.13 12.4 0.0 0.73 10.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain PfkB PF00294.24 gi|55377419|ref|YP_135269.1| - 3.3e-46 158.0 0.2 4e-46 157.7 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DUF5518 PF17647.1 gi|55377419|ref|YP_135269.1| - 0.11 12.6 0.5 0.19 11.9 0.5 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5518) PK PF00224.21 gi|55377420|ref|YP_135270.1| - 1.5e-112 376.0 4.3 2.4e-112 375.3 4.3 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|55377420|ref|YP_135270.1| - 1.1e-28 99.8 0.6 2.7e-28 98.6 0.6 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|55377420|ref|YP_135270.1| - 1.1e-11 44.3 0.2 1.1e-11 44.3 0.2 3.6 5 0 0 5 5 5 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|55377420|ref|YP_135270.1| - 0.026 13.7 1.7 0.071 12.2 0.3 2.1 1 1 0 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family T2SSF PF00482.23 gi|55377420|ref|YP_135270.1| - 0.16 11.9 1.1 16 5.4 0.0 3.3 2 1 0 3 3 3 0 Type II secretion system (T2SS), protein F LpxI_C PF06230.11 gi|55377420|ref|YP_135270.1| - 0.52 10.2 3.4 3.8 7.4 1.2 2.8 2 1 0 2 2 2 0 LpxI C-terminal domain ROK PF00480.20 gi|55377421|ref|YP_135271.1| - 5.4e-51 173.8 0.1 6.4e-51 173.6 0.1 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|55377421|ref|YP_135271.1| - 6.5e-06 25.9 0.1 2.2e-05 24.1 0.1 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 gi|55377421|ref|YP_135271.1| - 2.3e-05 24.1 0.1 0.0001 21.9 0.1 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family AAA_16 PF13191.6 gi|55377422|ref|YP_135272.1| - 4.6e-08 33.6 0.3 2.4e-07 31.3 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55377422|ref|YP_135272.1| - 5.5e-07 29.9 0.0 1.8e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|55377422|ref|YP_135272.1| - 0.00019 20.9 0.0 0.00033 20.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|55377422|ref|YP_135272.1| - 0.0053 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_assoc_2 PF16193.5 gi|55377422|ref|YP_135272.1| - 0.013 15.8 0.2 0.03 14.6 0.2 1.6 1 0 0 1 1 1 0 AAA C-terminal domain PIGA PF08288.12 gi|55377422|ref|YP_135272.1| - 0.058 14.0 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) SMC_N PF02463.19 gi|55377422|ref|YP_135272.1| - 0.14 11.5 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF2530 PF10745.9 gi|55377423|ref|YP_135273.1| - 1.4 9.3 0.0 1.4 9.3 0.0 4.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2530) FGGY_N PF00370.21 gi|55377424|ref|YP_135274.1| - 4.8e-75 252.3 0.0 6.3e-75 251.9 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|55377424|ref|YP_135274.1| - 7.1e-58 195.6 1.7 1.2e-57 194.9 1.7 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|55377424|ref|YP_135274.1| - 0.00092 18.8 0.4 0.033 13.7 0.1 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MCPsignal PF00015.21 gi|55377425|ref|YP_135275.1| - 7.9e-42 143.0 41.0 4.3e-41 140.6 20.5 3.7 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.6 gi|55377425|ref|YP_135275.1| - 1.2e-37 130.3 0.2 1.3e-36 126.9 0.0 2.4 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55377425|ref|YP_135275.1| - 2.7e-19 70.3 0.0 4.5e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1664 PF07889.12 gi|55377425|ref|YP_135275.1| - 1e-06 28.8 24.4 0.0031 17.6 5.4 4.9 4 1 1 5 5 5 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|55377425|ref|YP_135275.1| - 8.3e-06 26.0 37.3 0.00014 22.0 5.1 5.8 2 1 3 5 5 4 2 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 gi|55377425|ref|YP_135275.1| - 0.00078 19.9 5.3 0.00078 19.9 5.3 5.6 4 2 2 6 6 5 1 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|55377425|ref|YP_135275.1| - 0.00087 19.5 24.4 0.013 15.8 2.5 4.9 3 2 0 5 5 4 2 Seryl-tRNA synthetase N-terminal domain DUF2959 PF11172.8 gi|55377425|ref|YP_135275.1| - 0.0056 16.9 4.6 0.0056 16.9 4.6 4.3 2 1 2 4 4 4 1 Protein of unknown function (DUF2959) DUF2203 PF09969.9 gi|55377425|ref|YP_135275.1| - 0.0087 16.8 21.0 0.029 15.1 0.9 5.0 2 2 3 5 5 5 1 Uncharacterized conserved protein (DUF2203) Med9 PF07544.13 gi|55377425|ref|YP_135275.1| - 0.009 16.1 3.0 0.023 14.8 0.0 3.1 3 1 0 3 3 2 1 RNA polymerase II transcription mediator complex subunit 9 betaPIX_CC PF16523.5 gi|55377425|ref|YP_135275.1| - 0.019 14.8 1.0 0.28 11.0 0.2 2.9 2 0 0 2 2 2 0 betaPIX coiled coil EzrA PF06160.12 gi|55377425|ref|YP_135275.1| - 0.028 12.6 18.4 0.02 13.1 1.1 2.6 3 0 0 3 3 3 0 Septation ring formation regulator, EzrA Prp19 PF08606.11 gi|55377425|ref|YP_135275.1| - 0.033 14.2 0.2 0.033 14.2 0.2 2.5 3 0 0 3 3 1 0 Prp19/Pso4-like BLOC1_2 PF10046.9 gi|55377425|ref|YP_135275.1| - 0.044 14.1 24.8 0.74 10.2 2.7 5.7 4 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMPIT PF07851.13 gi|55377425|ref|YP_135275.1| - 0.064 12.5 7.3 1.3 8.2 0.3 2.6 2 0 0 2 2 2 0 TMPIT-like protein Lzipper-MIP1 PF14389.6 gi|55377425|ref|YP_135275.1| - 0.16 12.3 0.2 0.16 12.3 0.2 2.6 3 0 0 3 3 1 0 Leucine-zipper of ternary complex factor MIP1 Ferritin PF00210.24 gi|55377425|ref|YP_135275.1| - 0.17 11.8 7.8 0.085 12.8 1.8 2.9 2 0 0 2 2 2 0 Ferritin-like domain Filament PF00038.21 gi|55377425|ref|YP_135275.1| - 0.22 11.1 25.4 0.58 9.7 13.8 3.7 1 1 3 4 4 4 0 Intermediate filament protein V-SNARE_C PF12352.8 gi|55377425|ref|YP_135275.1| - 0.23 11.8 1.1 19 5.6 0.1 3.2 3 0 0 3 3 2 0 Snare region anchored in the vesicle membrane C-terminus YkyA PF10368.9 gi|55377425|ref|YP_135275.1| - 0.33 10.6 16.9 1.3 8.7 0.2 3.7 1 1 3 4 4 4 0 Putative cell-wall binding lipoprotein V_ATPase_I PF01496.19 gi|55377425|ref|YP_135275.1| - 1.2 6.9 9.5 3.2 5.5 9.4 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Prominin PF05478.11 gi|55377425|ref|YP_135275.1| - 1.7 6.5 12.8 2.9 5.7 6.5 2.4 1 1 2 3 3 3 0 Prominin Dynein_C PF18199.1 gi|55377425|ref|YP_135275.1| - 1.8 7.7 4.4 1.5 8.0 2.7 1.6 1 1 0 1 1 1 0 Dynein heavy chain C-terminal domain RPW8 PF05659.11 gi|55377425|ref|YP_135275.1| - 2 8.1 4.1 15 5.3 0.2 3.5 2 1 0 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Jnk-SapK_ap_N PF09744.9 gi|55377425|ref|YP_135275.1| - 2.2 8.5 23.6 1.3 9.3 2.7 4.0 2 2 0 3 3 3 0 JNK_SAPK-associated protein-1 Fib_alpha PF08702.10 gi|55377425|ref|YP_135275.1| - 2.5 8.3 13.3 12 6.0 0.6 3.6 1 1 2 4 4 4 0 Fibrinogen alpha/beta chain family CENP-Q PF13094.6 gi|55377425|ref|YP_135275.1| - 2.8 8.1 15.1 0.12 12.5 2.4 2.9 1 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit AIP3 PF03915.13 gi|55377425|ref|YP_135275.1| - 2.9 6.9 21.5 1.8 7.6 4.8 2.6 1 1 2 3 3 3 0 Actin interacting protein 3 Laminin_II PF06009.12 gi|55377425|ref|YP_135275.1| - 3.2 7.8 36.1 0.27 11.2 4.4 4.7 4 2 2 6 6 4 0 Laminin Domain II IFT57 PF10498.9 gi|55377425|ref|YP_135275.1| - 3.7 6.4 20.2 2 7.3 5.9 3.3 2 2 0 2 2 2 0 Intra-flagellar transport protein 57 Atg14 PF10186.9 gi|55377425|ref|YP_135275.1| - 4.5 6.3 10.9 0.82 8.7 0.9 2.9 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Not3 PF04065.15 gi|55377425|ref|YP_135275.1| - 4.9 6.5 21.3 1.4 8.2 2.2 3.3 1 1 2 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component CorA PF01544.18 gi|55377425|ref|YP_135275.1| - 5.1 6.3 14.7 2.1 7.6 2.3 2.8 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein NPV_P10 PF05531.12 gi|55377425|ref|YP_135275.1| - 5.3 7.6 29.6 9.4 6.8 2.0 5.8 5 1 1 6 6 4 0 Nucleopolyhedrovirus P10 protein Vps51 PF08700.11 gi|55377425|ref|YP_135275.1| - 7.3 6.8 11.0 3.6 7.7 0.2 4.9 5 1 0 5 5 5 0 Vps51/Vps67 BAR_2 PF10455.9 gi|55377425|ref|YP_135275.1| - 9.1 5.3 12.9 0.66 9.1 0.4 3.0 2 1 0 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking DAO PF01266.24 gi|55377426|ref|YP_135276.1| - 3.2e-54 184.8 0.9 5e-54 184.2 0.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|55377426|ref|YP_135276.1| - 3.9e-10 39.9 1.0 1.2e-09 38.4 1.0 1.9 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.24 gi|55377426|ref|YP_135276.1| - 8.1e-09 35.0 6.3 1.4e-07 31.0 6.3 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55377426|ref|YP_135276.1| - 1e-08 34.8 0.6 4.1e-08 32.8 0.6 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|55377426|ref|YP_135276.1| - 0.00014 21.3 8.0 0.0031 16.8 8.1 2.2 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|55377426|ref|YP_135276.1| - 0.00055 19.9 0.3 0.0012 18.8 0.3 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|55377426|ref|YP_135276.1| - 0.0031 17.7 3.1 0.0071 16.5 0.6 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|55377426|ref|YP_135276.1| - 0.011 16.2 3.2 0.029 14.9 0.5 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|55377426|ref|YP_135276.1| - 0.017 14.2 1.6 0.74 8.8 0.2 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|55377426|ref|YP_135276.1| - 0.05 12.9 6.7 0.28 10.5 6.7 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase DAO_C PF16901.5 gi|55377426|ref|YP_135276.1| - 0.056 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase ApbA PF02558.16 gi|55377426|ref|YP_135276.1| - 0.074 12.7 0.3 0.17 11.5 0.3 1.7 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|55377426|ref|YP_135276.1| - 0.17 11.9 3.7 6.4 6.8 0.4 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|55377426|ref|YP_135276.1| - 0.18 10.5 1.2 0.4 9.3 0.2 1.8 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.17 gi|55377426|ref|YP_135276.1| - 0.26 10.5 1.9 1.4 8.1 0.2 2.2 2 0 0 2 2 2 0 Thi4 family Pyr_redox_3 PF13738.6 gi|55377426|ref|YP_135276.1| - 0.28 10.4 1.6 0.89 8.8 0.5 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55377426|ref|YP_135276.1| - 0.47 9.5 3.7 2.5 7.1 1.5 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|55377427|ref|YP_135277.1| - 2.6e-39 135.5 0.1 3.1e-39 135.3 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|55377427|ref|YP_135277.1| - 4.5e-08 33.1 0.0 0.0051 16.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|55377427|ref|YP_135277.1| - 3.6e-06 26.6 0.8 1.2e-05 24.9 1.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55377427|ref|YP_135277.1| - 4.2e-06 26.2 0.0 0.00036 19.8 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55377427|ref|YP_135277.1| - 5.2e-05 22.5 0.4 5.2e-05 22.5 0.4 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|55377427|ref|YP_135277.1| - 0.00022 20.1 0.0 0.04 12.6 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|55377427|ref|YP_135277.1| - 0.0015 17.9 0.6 0.0028 17.0 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|55377427|ref|YP_135277.1| - 0.0023 17.2 0.6 0.0044 16.3 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|55377427|ref|YP_135277.1| - 0.0093 16.5 0.1 0.035 14.7 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|55377427|ref|YP_135277.1| - 0.011 15.9 1.0 0.027 14.7 1.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|55377427|ref|YP_135277.1| - 0.059 13.8 0.1 0.15 12.5 0.0 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|55377427|ref|YP_135277.1| - 0.15 11.9 0.2 0.23 11.3 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CCG PF02754.16 gi|55377428|ref|YP_135278.1| - 2e-21 76.0 1.9 2.6e-10 40.4 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|55377428|ref|YP_135278.1| - 4.2e-10 39.9 13.8 2.2e-09 37.6 6.4 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55377428|ref|YP_135278.1| - 4e-06 27.3 7.4 4e-06 27.3 7.4 3.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55377428|ref|YP_135278.1| - 1.6e-05 25.4 7.5 1.6e-05 25.4 7.5 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55377428|ref|YP_135278.1| - 0.00067 19.7 17.2 0.0073 16.4 12.5 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55377428|ref|YP_135278.1| - 0.002 18.3 10.3 0.002 18.3 10.3 3.4 3 1 0 3 3 3 1 4Fe-4S dicluster domain DUF3390 PF11870.8 gi|55377428|ref|YP_135278.1| - 0.0072 16.7 0.1 0.014 15.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3390) DDE_Tnp_ISAZ013 PF07592.11 gi|55377428|ref|YP_135278.1| - 0.2 10.6 0.1 0.34 9.8 0.1 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Fer4_16 PF13484.6 gi|55377428|ref|YP_135278.1| - 0.27 12.2 16.1 0.68 10.9 10.6 4.0 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|55377428|ref|YP_135278.1| - 2.2 8.5 13.8 1.3 9.2 1.1 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain DUF2072 PF09845.9 gi|55377429|ref|YP_135279.1| - 0.18 12.1 0.6 0.57 10.4 0.0 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein HAMP PF00672.25 gi|55377430|ref|YP_135280.1| - 1.4e-06 28.6 6.0 0.00013 22.3 0.8 2.3 2 0 0 2 2 2 2 HAMP domain DUF898 PF05987.13 gi|55377430|ref|YP_135280.1| - 0.029 13.4 0.5 0.04 13.0 0.5 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) Yip1 PF04893.17 gi|55377430|ref|YP_135280.1| - 0.042 13.6 3.8 0.059 13.1 3.8 1.2 1 0 0 1 1 1 0 Yip1 domain EMP70 PF02990.16 gi|55377430|ref|YP_135280.1| - 0.076 11.7 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 FtsX PF02687.21 gi|55377430|ref|YP_135280.1| - 0.093 13.2 3.5 0.14 12.6 3.5 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF2207 PF09972.9 gi|55377430|ref|YP_135280.1| - 0.14 10.9 0.7 0.21 10.3 0.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF418 PF04235.12 gi|55377430|ref|YP_135280.1| - 0.15 12.0 2.2 0.21 11.5 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF418) DUF4307 PF14155.6 gi|55377430|ref|YP_135280.1| - 0.5 10.2 6.7 1.2 8.9 0.4 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4307) Bac_rhodopsin PF01036.18 gi|55377431|ref|YP_135281.1| - 3.7e-35 121.5 23.2 4.4e-35 121.3 23.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Phage_holin_3_6 PF07332.11 gi|55377431|ref|YP_135281.1| - 5.3 7.1 14.5 2.8 8.0 3.5 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Usp PF00582.26 gi|55377432|ref|YP_135282.1| - 3.3e-17 63.3 0.4 4.1e-17 63.0 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family PEPcase PF00311.17 gi|55377433|ref|YP_135283.1| - 5e-241 802.1 0.6 6.6e-241 801.7 0.6 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|55377433|ref|YP_135283.1| - 0.00056 18.5 0.0 0.0014 17.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase COMMD1_N PF17221.3 gi|55377433|ref|YP_135283.1| - 0.067 13.5 0.1 23 5.3 0.0 3.8 3 0 0 3 3 3 0 COMMD1 N-terminal domain Activator-TraM PF11657.8 gi|55377433|ref|YP_135283.1| - 0.33 10.8 5.8 0.083 12.7 0.5 2.6 3 0 0 3 3 3 0 Transcriptional activator TraM TipAS PF07739.13 gi|55377433|ref|YP_135283.1| - 7.3 7.2 7.3 13 6.4 1.7 3.8 4 0 0 4 4 4 0 TipAS antibiotic-recognition domain HTH_10 PF04967.12 gi|55377434|ref|YP_135284.1| - 1.1e-16 60.3 0.0 2.2e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|55377434|ref|YP_135284.1| - 0.01 15.7 0.1 0.036 13.9 0.0 2.0 2 0 0 2 2 2 0 MarR family UPF0122 PF04297.14 gi|55377434|ref|YP_135284.1| - 0.059 13.6 0.0 0.21 11.8 0.0 1.9 1 1 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_5 PF01022.20 gi|55377434|ref|YP_135284.1| - 0.092 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Oxidored_q2 PF00420.24 gi|55377435|ref|YP_135285.1| - 0.28 10.9 3.9 0.37 10.4 3.9 1.2 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Peripla_BP_6 PF13458.6 gi|55377436|ref|YP_135286.1| - 1.2e-69 235.6 12.5 1.6e-69 235.2 12.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|55377436|ref|YP_135286.1| - 1.2e-15 57.4 1.3 2.5e-15 56.4 1.3 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.27 gi|55377437|ref|YP_135287.1| - 3.6e-27 95.5 0.0 4.7e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|55377437|ref|YP_135287.1| - 2.2e-11 43.4 1.0 5.5e-11 42.1 0.6 1.9 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|55377437|ref|YP_135287.1| - 6.5e-07 29.5 1.5 0.013 15.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377437|ref|YP_135287.1| - 2e-05 24.1 0.0 2.8e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|55377437|ref|YP_135287.1| - 6.5e-05 23.5 0.0 7e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|55377437|ref|YP_135287.1| - 0.00044 20.5 0.3 0.023 14.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|55377437|ref|YP_135287.1| - 0.0026 17.7 0.0 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|55377437|ref|YP_135287.1| - 0.003 17.6 0.1 0.0091 16.1 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|55377437|ref|YP_135287.1| - 0.016 15.0 0.1 0.028 14.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|55377437|ref|YP_135287.1| - 0.034 13.9 0.0 0.054 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55377437|ref|YP_135287.1| - 0.036 14.4 0.5 0.085 13.2 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|55377437|ref|YP_135287.1| - 0.059 13.1 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|55377437|ref|YP_135287.1| - 0.081 12.5 0.1 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|55377437|ref|YP_135287.1| - 0.094 12.9 0.3 0.14 12.4 0.3 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|55377437|ref|YP_135287.1| - 0.12 11.7 0.0 0.24 10.6 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|55377437|ref|YP_135287.1| - 0.12 12.8 0.2 0.96 9.9 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|55377438|ref|YP_135288.1| - 1.1e-08 35.7 0.0 1.6e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377438|ref|YP_135288.1| - 0.00033 20.6 0.1 0.00041 20.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system BPD_transp_2 PF02653.16 gi|55377439|ref|YP_135289.1| - 2.4e-38 131.9 40.5 3e-38 131.5 40.5 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF485 PF04341.12 gi|55377439|ref|YP_135289.1| - 0.059 13.3 0.2 0.059 13.3 0.2 4.4 5 1 1 6 6 6 0 Protein of unknown function, DUF485 BPD_transp_2 PF02653.16 gi|55377440|ref|YP_135290.1| - 9.1e-32 110.3 27.9 1.4e-31 109.6 27.9 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Abhydrolase_1 PF00561.20 gi|55377442|ref|YP_135292.1| - 1.8e-25 90.1 0.0 1.9e-17 63.8 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|55377442|ref|YP_135292.1| - 4.3e-20 73.3 1.1 5e-20 73.0 1.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|55377442|ref|YP_135292.1| - 1.1e-17 64.1 0.1 1.7e-16 60.2 0.1 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|55377442|ref|YP_135292.1| - 6.4e-07 29.4 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|55377442|ref|YP_135292.1| - 7.9e-06 25.7 0.0 0.1 12.4 0.0 2.3 2 0 0 2 2 2 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|55377442|ref|YP_135292.1| - 0.00056 19.4 0.0 0.0046 16.4 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF915 PF06028.11 gi|55377442|ref|YP_135292.1| - 0.0079 15.6 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF915) Ndr PF03096.14 gi|55377442|ref|YP_135292.1| - 0.011 14.5 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 Ndr family UPF0227 PF05728.12 gi|55377442|ref|YP_135292.1| - 0.011 15.7 0.0 0.87 9.5 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) FSH1 PF03959.13 gi|55377442|ref|YP_135292.1| - 0.012 15.3 0.0 0.023 14.4 0.0 1.4 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 gi|55377442|ref|YP_135292.1| - 0.018 14.8 0.1 0.3 10.9 0.0 2.5 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase AMP-binding PF00501.28 gi|55377443|ref|YP_135293.1| - 4.7e-83 279.1 0.0 5.6e-83 278.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55377443|ref|YP_135293.1| - 5.7e-13 49.6 0.0 1.1e-12 48.7 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PAS_3 PF08447.12 gi|55377444|ref|YP_135294.1| - 2.2e-28 98.4 0.0 5.8e-18 65.0 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|55377444|ref|YP_135294.1| - 6.4e-27 94.0 2.0 7.4e-13 48.7 0.1 3.1 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.7 gi|55377444|ref|YP_135294.1| - 7.7e-23 80.7 0.0 3.8e-10 39.9 0.0 3.0 2 1 1 3 3 3 2 PAS domain PAS PF00989.25 gi|55377444|ref|YP_135294.1| - 7.4e-16 58.1 0.0 5.6e-09 36.0 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|55377444|ref|YP_135294.1| - 4.4e-13 49.7 0.0 8.5e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55377444|ref|YP_135294.1| - 1.2e-10 41.2 0.4 1.2e-10 41.2 0.4 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|55377444|ref|YP_135294.1| - 2.2e-05 24.6 0.0 4.6e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|55377444|ref|YP_135294.1| - 4.3e-05 23.4 0.0 0.025 14.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain Fn3-like PF14310.6 gi|55377444|ref|YP_135294.1| - 0.12 12.5 0.4 0.42 10.8 0.1 2.1 2 0 0 2 2 2 0 Fibronectin type III-like domain MR_MLE_C PF13378.6 gi|55377445|ref|YP_135295.1| - 3e-54 183.9 0.6 4.4e-54 183.4 0.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|55377445|ref|YP_135295.1| - 3.3e-14 53.1 0.0 7.5e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Pertussis_S1 PF02917.14 gi|55377445|ref|YP_135295.1| - 0.1 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Pertussis toxin, subunit 1 DUF4397 PF14344.6 gi|55377446|ref|YP_135296.1| - 3.9e-83 276.2 16.9 8.7e-36 123.4 1.9 4.1 4 0 0 4 4 4 4 Domain of unknown function (DUF4397) AlgF PF11182.8 gi|55377446|ref|YP_135296.1| - 9.9e-08 32.0 1.2 0.49 10.2 0.0 4.1 4 0 0 4 4 4 3 Alginate O-acetyl transferase AlgF Y_Y_Y PF07495.13 gi|55377446|ref|YP_135296.1| - 6.2e-05 22.9 0.0 0.25 11.3 0.0 2.4 2 0 0 2 2 2 2 Y_Y_Y domain baeRF_family8 PF18851.1 gi|55377446|ref|YP_135296.1| - 0.091 12.8 0.1 9 6.4 0.0 2.6 3 0 0 3 3 3 0 Bacterial archaeo-eukaryotic release factor family 8 DUF4493 PF14900.6 gi|55377446|ref|YP_135296.1| - 0.31 10.9 4.2 42 3.9 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4493) HTH_20 PF12840.7 gi|55377447|ref|YP_135297.1| - 4e-12 46.0 0.0 5.8e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55377447|ref|YP_135297.1| - 1.8e-10 40.5 0.0 2.3e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|55377447|ref|YP_135297.1| - 1.4e-05 24.5 0.0 2.9e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55377447|ref|YP_135297.1| - 3.3e-05 23.7 0.0 4.9e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.6 gi|55377447|ref|YP_135297.1| - 8.9e-05 22.2 0.1 0.00016 21.4 0.1 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 gi|55377447|ref|YP_135297.1| - 0.00058 19.6 0.0 0.0009 19.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|55377447|ref|YP_135297.1| - 0.0031 17.6 0.0 0.0052 16.9 0.0 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_45 PF14947.6 gi|55377447|ref|YP_135297.1| - 0.0049 16.8 0.0 0.012 15.5 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|55377447|ref|YP_135297.1| - 0.0051 16.7 0.0 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Penicillinase_R PF03965.16 gi|55377447|ref|YP_135297.1| - 0.0068 16.7 0.0 0.0083 16.5 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_Tnp_ISL3 PF13542.6 gi|55377447|ref|YP_135297.1| - 0.0081 15.6 0.2 1.9 8.0 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 RP-C PF03428.13 gi|55377447|ref|YP_135297.1| - 0.024 14.3 0.0 0.038 13.6 0.0 1.3 1 1 0 1 1 1 0 Replication protein C N-terminal domain GerE PF00196.19 gi|55377447|ref|YP_135297.1| - 0.031 13.8 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family TrmB PF01978.19 gi|55377447|ref|YP_135297.1| - 0.056 13.3 0.0 0.075 12.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|55377447|ref|YP_135297.1| - 0.081 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_10 PF04967.12 gi|55377447|ref|YP_135297.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Phage_rep_org_N PF09681.10 gi|55377447|ref|YP_135297.1| - 0.086 12.8 0.0 0.089 12.7 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.12 gi|55377447|ref|YP_135297.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|55377447|ref|YP_135297.1| - 0.18 12.2 0.0 0.3 11.5 0.0 1.5 1 1 0 1 1 1 0 Transcriptional regulator Phage_integrase PF00589.22 gi|55377449|ref|YP_135299.1| - 5.9e-08 32.7 0.0 1.5e-07 31.3 0.0 1.7 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|55377449|ref|YP_135299.1| - 0.00029 21.1 0.0 0.00092 19.5 0.0 1.9 2 0 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|55377449|ref|YP_135299.1| - 0.0015 18.8 0.5 0.0038 17.5 0.5 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain RHH_1 PF01402.21 gi|55377451|ref|YP_135301.1| - 2.3e-05 24.1 0.1 3.4e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HTH_45 PF14947.6 gi|55377452|ref|YP_135302.1| - 0.0011 18.8 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|55377452|ref|YP_135302.1| - 0.002 18.2 0.0 0.0038 17.3 0.0 1.5 1 1 0 1 1 1 1 Mrr N-terminal domain MarR_2 PF12802.7 gi|55377452|ref|YP_135302.1| - 0.0051 16.7 0.0 0.0078 16.1 0.0 1.6 1 1 0 1 1 1 1 MarR family PIN PF01850.21 gi|55377454|ref|YP_135304.1| - 6.1e-05 23.5 0.0 7.1e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 gi|55377454|ref|YP_135304.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4411) VAPB_antitox PF02697.14 gi|55377455|ref|YP_135305.1| - 8.7e-12 45.6 7.1 9.8e-12 45.5 7.1 1.1 1 0 0 1 1 1 1 Putative antitoxin YkyA PF10368.9 gi|55377455|ref|YP_135305.1| - 0.0041 16.8 2.6 0.0044 16.7 2.6 1.0 1 0 0 1 1 1 1 Putative cell-wall binding lipoprotein DUF5586 PF17824.1 gi|55377455|ref|YP_135305.1| - 0.014 14.5 2.1 0.014 14.5 2.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5586) APG6_N PF17675.1 gi|55377455|ref|YP_135305.1| - 0.033 14.7 3.9 0.037 14.6 3.9 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region BLOC1_2 PF10046.9 gi|55377455|ref|YP_135305.1| - 0.043 14.1 1.5 0.16 12.3 1.5 1.8 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cupin_4 PF08007.12 gi|55377455|ref|YP_135305.1| - 0.043 13.3 0.6 0.045 13.2 0.6 1.0 1 0 0 1 1 1 0 Cupin superfamily protein CorA PF01544.18 gi|55377455|ref|YP_135305.1| - 0.11 11.8 2.4 0.14 11.4 2.3 1.3 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein HupH_C PF04809.13 gi|55377455|ref|YP_135305.1| - 0.17 11.6 0.9 2.7 7.7 0.0 2.0 1 1 1 2 2 2 0 HupH hydrogenase expression protein, C-terminal conserved region DUF5595 PF18077.1 gi|55377455|ref|YP_135305.1| - 0.19 11.8 3.6 0.19 11.8 2.4 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF5595) PocR PF10114.9 gi|55377455|ref|YP_135305.1| - 0.22 11.3 0.5 0.23 11.3 0.5 1.1 1 0 0 1 1 1 0 Sensory domain found in PocR XhlA PF10779.9 gi|55377455|ref|YP_135305.1| - 3.8 7.8 6.6 1.6 9.0 1.6 2.0 1 1 1 2 2 2 0 Haemolysin XhlA RHH_1 PF01402.21 gi|55377455|ref|YP_135305.1| - 8.4 6.5 13.7 2.8 8.0 0.6 3.0 3 1 1 4 4 4 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.22 gi|55377457|ref|YP_135306.1| - 1.5e-13 50.9 0.0 2.7e-13 50.0 0.0 1.4 1 1 0 1 1 1 1 Phage integrase family HTH_23 PF13384.6 gi|55377457|ref|YP_135306.1| - 0.015 15.1 0.1 0.25 11.2 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HEPN_MAE_28990 PF18737.1 gi|55377456|ref|YP_135307.1| - 0.00034 20.6 0.1 0.00039 20.4 0.1 1.3 1 1 0 1 1 1 1 MAE_28990/MAE_18760-like HEPN HEPN_RiboL-PSP PF18735.1 gi|55377456|ref|YP_135307.1| - 0.00076 19.5 0.3 0.0013 18.7 0.3 1.4 1 1 0 1 1 1 1 RiboL-PSP-HEPN HEPN_Apea PF18739.1 gi|55377456|ref|YP_135307.1| - 0.0063 16.9 1.4 0.032 14.7 0.8 2.3 1 1 0 1 1 1 1 Apea-like HEPN Gram_pos_anchor PF00746.21 gi|55377462|ref|YP_135312.1| - 0.0079 16.1 0.3 0.015 15.2 0.3 1.5 1 0 0 1 1 1 1 LPXTG cell wall anchor motif Adeno_shaft PF00608.17 gi|55377464|ref|YP_135314.1| - 0.0015 18.2 0.9 0.0015 18.2 0.9 2.9 2 0 0 2 2 2 1 Adenoviral fibre protein (repeat/shaft region) Lipoprotein_21 PF14041.6 gi|55377470|ref|YP_135320.1| - 0.055 13.6 0.2 0.13 12.4 0.2 1.7 1 0 0 1 1 1 0 LppP/LprE lipoprotein Cse1 PF08506.10 gi|55377472|ref|YP_135322.1| - 0.11 11.3 0.1 0.11 11.3 0.1 1.0 1 0 0 1 1 1 0 Cse1 Zot PF05707.12 gi|55377473|ref|YP_135323.1| - 0.011 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_22 PF13401.6 gi|55377473|ref|YP_135323.1| - 0.17 12.1 0.0 0.26 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain Podoplanin PF05808.11 gi|55377477|ref|YP_135327.1| - 0.13 12.4 1.9 0.29 11.2 1.9 1.6 1 1 0 1 1 1 0 Podoplanin SPX PF03105.19 gi|55377477|ref|YP_135327.1| - 0.19 11.6 7.4 0.19 11.6 7.4 1.1 1 0 0 1 1 1 0 SPX domain Presenilin PF01080.17 gi|55377477|ref|YP_135327.1| - 0.94 8.2 3.0 1 8.1 3.0 1.1 1 0 0 1 1 1 0 Presenilin Lin-8 PF03353.15 gi|55377477|ref|YP_135327.1| - 1.4 8.4 5.6 1.7 8.1 5.6 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist CDC45 PF02724.14 gi|55377477|ref|YP_135327.1| - 4.8 5.3 8.9 6.3 5.0 8.9 1.2 1 0 0 1 1 1 0 CDC45-like protein Nop14 PF04147.12 gi|55377477|ref|YP_135327.1| - 4.9 5.2 14.2 6.4 4.8 14.2 1.1 1 0 0 1 1 1 0 Nop14-like family Spt20 PF12090.8 gi|55377477|ref|YP_135327.1| - 5.3 6.6 12.2 7.7 6.1 12.2 1.4 1 0 0 1 1 1 0 Spt20 family DUF4611 PF15387.6 gi|55377478|ref|YP_135328.1| - 0.022 15.0 0.3 0.076 13.2 0.3 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4611) Zn-ribbon_8 PF09723.10 gi|55377479|ref|YP_135329.1| - 0.0019 18.3 0.9 0.0039 17.3 0.9 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|55377479|ref|YP_135329.1| - 0.0063 16.5 1.8 0.011 15.7 1.8 1.5 1 1 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|55377479|ref|YP_135329.1| - 0.078 13.0 2.0 0.18 11.8 2.0 1.6 1 1 0 1 1 1 0 zinc-ribbons zf-FPG_IleRS PF06827.14 gi|55377479|ref|YP_135329.1| - 0.27 11.1 4.2 1.3 9.0 1.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS MarR_2 PF12802.7 gi|55377480|ref|YP_135330.1| - 0.013 15.4 0.1 0.029 14.3 0.1 1.6 1 1 0 1 1 1 0 MarR family SYF2 PF08231.12 gi|55377480|ref|YP_135330.1| - 0.014 15.8 0.2 0.017 15.6 0.2 1.1 1 0 0 1 1 1 0 SYF2 splicing factor TrmB PF01978.19 gi|55377480|ref|YP_135330.1| - 0.017 15.0 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB gp12-short_mid PF09089.10 gi|55377480|ref|YP_135330.1| - 0.13 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Phage short tail fibre protein gp12, middle domain BID PF06393.11 gi|55377480|ref|YP_135330.1| - 0.14 11.7 0.0 8.7 5.8 0.0 2.0 2 0 0 2 2 2 0 BH3 interacting domain (BID) Sigma70_r4_2 PF08281.12 gi|55377481|ref|YP_135331.1| - 0.00028 20.5 0.0 0.00047 19.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 SWIM PF04434.17 gi|55377481|ref|YP_135331.1| - 0.0026 17.4 0.4 0.0042 16.7 0.4 1.3 1 0 0 1 1 1 1 SWIM zinc finger Beta_helix PF13229.6 gi|55377482|ref|YP_135332.1| - 2.4e-10 40.5 11.6 1.3e-07 31.6 5.3 2.5 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|55377482|ref|YP_135332.1| - 1.8e-06 27.5 3.9 0.00045 19.6 0.1 3.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Inhibitor_I66 PF16850.5 gi|55377482|ref|YP_135332.1| - 2.7 7.8 7.2 11 5.9 1.4 3.2 2 1 1 3 3 3 0 Peptidase inhibitor I66 Lipocalin_4 PF13648.6 gi|55377482|ref|YP_135332.1| - 9.9 7.2 20.3 6.2e+02 1.5 10.9 4.5 1 1 1 2 2 2 0 Lipocalin-like domain ResIII PF04851.15 gi|55377483|ref|YP_135333.1| - 7.8e-25 87.8 0.0 4.9e-24 85.2 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|55377483|ref|YP_135333.1| - 1.9e-19 69.8 0.1 2.7e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|55377483|ref|YP_135333.1| - 1.2e-18 66.7 1.7 3.7e-18 65.1 1.7 1.9 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|55377483|ref|YP_135333.1| - 1.6e-15 57.4 0.0 1.3e-14 54.4 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|55377483|ref|YP_135333.1| - 1.2e-08 35.0 0.0 5.3e-08 32.8 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|55377483|ref|YP_135333.1| - 0.023 14.9 0.0 9.4 6.4 0.0 2.6 3 0 0 3 3 3 0 Helicase C-terminal domain DUF389 PF04087.14 gi|55377484|ref|YP_135334.1| - 2.3e-29 102.3 20.5 3e-29 101.9 15.9 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF389) DUF790 PF05626.11 gi|55377485|ref|YP_135335.1| - 1.3e-114 382.9 0.0 1.7e-114 382.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) NTP_transf_5 PF14907.6 gi|55377486|ref|YP_135336.1| - 3.3e-67 226.8 0.1 4.1e-67 226.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase MatE PF01554.18 gi|55377486|ref|YP_135336.1| - 0.076 12.7 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 MatE Hpr_kinase_C PF07475.12 gi|55377487|ref|YP_135337.1| - 1.1e-06 28.2 0.1 1.9e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.6 gi|55377487|ref|YP_135337.1| - 0.037 13.8 0.0 0.079 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55377487|ref|YP_135337.1| - 0.049 14.0 0.0 0.098 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain PEPCK_ATP PF01293.20 gi|55377487|ref|YP_135337.1| - 0.088 11.5 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase ABC_tran PF00005.27 gi|55377487|ref|YP_135337.1| - 0.089 13.3 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATPase PF06745.13 gi|55377487|ref|YP_135337.1| - 0.092 12.1 0.0 0.21 10.9 0.0 1.5 2 0 0 2 2 2 0 KaiC RsgA_GTPase PF03193.16 gi|55377487|ref|YP_135337.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|55377487|ref|YP_135337.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PqqD PF05402.12 gi|55377489|ref|YP_135339.1| - 1e-15 57.8 0.1 1.3e-15 57.4 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) PsbU PF06514.11 gi|55377489|ref|YP_135339.1| - 0.011 15.7 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) ABC_tran PF00005.27 gi|55377490|ref|YP_135340.1| - 1.3e-31 110.0 0.0 2.3e-31 109.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|55377490|ref|YP_135340.1| - 7.8e-10 38.8 3.8 1.4e-09 38.1 3.8 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|55377490|ref|YP_135340.1| - 3.5e-05 23.3 4.0 0.00016 21.2 0.2 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|55377490|ref|YP_135340.1| - 0.0054 17.1 0.2 0.011 16.1 0.2 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|55377490|ref|YP_135340.1| - 0.023 14.4 0.1 0.051 13.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|55377490|ref|YP_135340.1| - 0.026 14.8 0.7 0.13 12.5 0.7 2.1 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.6 gi|55377490|ref|YP_135340.1| - 0.13 12.0 0.2 0.87 9.3 0.0 2.2 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF87 PF01935.17 gi|55377490|ref|YP_135340.1| - 0.16 12.0 0.1 0.37 10.8 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain PMP1_2 PF08114.11 gi|55377490|ref|YP_135340.1| - 6.8 6.5 9.0 0.088 12.6 0.6 2.2 2 0 0 2 2 2 0 ATPase proteolipid family Methyltranf_PUA PF13636.6 gi|55377491|ref|YP_135341.1| - 4.6e-12 45.7 0.1 6.9e-12 45.2 0.1 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|55377492|ref|YP_135342.1| - 3.1e-50 170.6 0.0 4.4e-50 170.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|55377492|ref|YP_135342.1| - 7e-11 42.5 0.0 7.9e-10 39.1 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|55377492|ref|YP_135342.1| - 4.6e-05 23.6 0.0 7.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|55377492|ref|YP_135342.1| - 0.0022 17.8 0.0 0.0049 16.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|55377492|ref|YP_135342.1| - 0.089 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PAC2 PF09754.9 gi|55377493|ref|YP_135343.1| - 1.7e-41 142.6 0.0 2e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Peptidase_S49 PF01343.18 gi|55377494|ref|YP_135344.1| - 1.1e-40 139.1 0.0 1.5e-40 138.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|55377494|ref|YP_135344.1| - 0.046 13.6 0.1 0.58 10.0 0.0 2.1 2 0 0 2 2 2 0 Clp protease DUF3500 PF12006.8 gi|55377494|ref|YP_135344.1| - 0.05 13.1 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3500) Pilin_N PF07790.11 gi|55377494|ref|YP_135344.1| - 0.061 14.3 0.0 0.22 12.4 0.0 1.9 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF373 PF04123.13 gi|55377495|ref|YP_135345.1| - 3.7e-32 112.1 5.9 4.3e-32 111.9 5.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) SUR7 PF06687.12 gi|55377495|ref|YP_135345.1| - 0.036 13.7 0.1 0.036 13.7 0.1 1.6 2 1 0 2 2 2 0 SUR7/PalI family DUF5353 PF17304.2 gi|55377495|ref|YP_135345.1| - 3.1 7.6 8.8 18 5.2 5.4 3.3 2 1 0 2 2 2 0 Family of unknown function (DUF5353) Diphthami_syn_2 PF01902.17 gi|55377496|ref|YP_135346.1| - 1.9e-58 197.6 0.0 3.2e-58 196.8 0.0 1.4 1 1 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|55377496|ref|YP_135346.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|55377496|ref|YP_135346.1| - 0.07 12.6 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NTP_transferase PF00483.23 gi|55377497|ref|YP_135347.1| - 6.4e-39 134.0 0.0 8.9e-39 133.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55377497|ref|YP_135347.1| - 9.6e-10 39.0 0.0 1.3e-09 38.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NUDIX PF00293.28 gi|55377498|ref|YP_135348.1| - 2.7e-10 40.4 0.1 4.5e-10 39.7 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain Ribosomal_L3 PF00297.22 gi|55377498|ref|YP_135348.1| - 0.088 11.8 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L3 Dysbindin PF04440.16 gi|55377498|ref|YP_135348.1| - 0.18 12.0 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Dysbindin (Dystrobrevin binding protein 1) Glyoxalase_4 PF13669.6 gi|55377499|ref|YP_135349.1| - 7.2e-14 52.0 0.0 9.1e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|55377499|ref|YP_135349.1| - 5.5e-09 36.4 0.3 5.9e-09 36.3 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|55377499|ref|YP_135349.1| - 5.9e-05 23.3 0.0 7.2e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|55377499|ref|YP_135349.1| - 0.0027 18.5 0.1 0.0036 18.1 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain MM_CoA_mutase PF01642.22 gi|55377501|ref|YP_135350.1| - 9.2e-226 750.3 4.0 1.1e-225 750.1 4.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase NPV_P10 PF05531.12 gi|55377501|ref|YP_135350.1| - 0.11 12.9 1.1 0.48 10.9 1.1 2.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein SHE3 PF17078.5 gi|55377501|ref|YP_135350.1| - 2.8 7.6 5.0 26 4.4 2.1 2.2 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 FKBP_C PF00254.28 gi|55377500|ref|YP_135351.1| - 1e-23 83.4 0.1 1.4e-23 83.0 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Acetyltransf_1 PF00583.25 gi|55377502|ref|YP_135352.1| - 3.2e-10 40.2 0.0 4.7e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55377502|ref|YP_135352.1| - 1.4e-06 28.2 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55377502|ref|YP_135352.1| - 2.6e-06 27.8 0.0 3.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55377502|ref|YP_135352.1| - 0.004 17.3 0.0 0.0067 16.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|55377502|ref|YP_135352.1| - 0.024 15.3 0.0 0.032 14.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55377502|ref|YP_135352.1| - 0.079 13.0 0.0 0.16 12.1 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377502|ref|YP_135352.1| - 0.13 12.2 0.0 0.41 10.7 0.0 1.8 2 1 0 2 2 2 0 FR47-like protein HTH_10 PF04967.12 gi|55377503|ref|YP_135353.1| - 1.1e-17 63.6 0.1 3.4e-17 62.0 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain UPF0122 PF04297.14 gi|55377503|ref|YP_135353.1| - 0.0082 16.4 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 gi|55377503|ref|YP_135353.1| - 0.031 13.8 0.1 0.077 12.5 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|55377503|ref|YP_135353.1| - 0.098 12.6 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.27 gi|55377504|ref|YP_135354.1| - 4.1e-28 98.6 0.0 6.1e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377504|ref|YP_135354.1| - 4e-06 26.9 0.4 0.019 14.8 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377504|ref|YP_135354.1| - 0.0057 16.1 0.5 0.38 10.1 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arylesterase PF01731.20 gi|55377504|ref|YP_135354.1| - 0.021 15.0 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 Arylesterase AAA_23 PF13476.6 gi|55377504|ref|YP_135354.1| - 0.078 13.5 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55377505|ref|YP_135355.1| - 3.1e-26 92.5 0.0 4e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|55377505|ref|YP_135355.1| - 4.2e-06 27.4 1.0 6.5e-06 26.8 1.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|55377505|ref|YP_135355.1| - 7.1e-06 26.0 2.6 0.00095 19.1 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|55377505|ref|YP_135355.1| - 2.9e-05 24.0 0.0 3.2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|55377505|ref|YP_135355.1| - 0.00025 20.7 0.1 0.00051 19.7 0.1 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|55377505|ref|YP_135355.1| - 0.00034 20.0 0.0 0.00071 18.9 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_13 PF13166.6 gi|55377505|ref|YP_135355.1| - 0.0014 17.4 0.0 0.0018 17.0 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55377505|ref|YP_135355.1| - 0.002 17.9 0.0 0.0071 16.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|55377505|ref|YP_135355.1| - 0.0036 17.1 0.0 0.0055 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|55377505|ref|YP_135355.1| - 0.0036 16.8 0.0 0.0066 15.9 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55377505|ref|YP_135355.1| - 0.0037 17.0 0.0 0.0078 15.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55377505|ref|YP_135355.1| - 0.0058 17.0 0.0 0.008 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|55377505|ref|YP_135355.1| - 0.0058 16.8 0.0 0.0093 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|55377505|ref|YP_135355.1| - 0.009 15.6 0.1 0.025 14.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|55377505|ref|YP_135355.1| - 0.0096 16.2 0.0 0.14 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|55377505|ref|YP_135355.1| - 0.012 15.7 0.3 0.028 14.5 0.1 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|55377505|ref|YP_135355.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|55377505|ref|YP_135355.1| - 0.036 14.1 0.0 1.3 9.1 0.0 2.2 1 1 1 2 2 2 0 AAA domain T2SSE PF00437.20 gi|55377505|ref|YP_135355.1| - 0.043 12.9 0.1 0.067 12.2 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein TsaE PF02367.17 gi|55377505|ref|YP_135355.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|55377505|ref|YP_135355.1| - 0.091 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PIF1 PF05970.14 gi|55377505|ref|YP_135355.1| - 0.098 11.8 0.0 0.19 10.9 0.0 1.4 1 1 0 1 1 1 0 PIF1-like helicase MobB PF03205.14 gi|55377505|ref|YP_135355.1| - 0.12 12.3 0.2 1.8 8.5 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|55377505|ref|YP_135355.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase BPD_transp_2 PF02653.16 gi|55377506|ref|YP_135356.1| - 9.8e-31 106.9 31.9 1.8e-30 106.1 31.9 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|55377507|ref|YP_135357.1| - 1.1e-31 110.0 39.5 1.4e-31 109.7 39.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|55377508|ref|YP_135358.1| - 2e-38 132.9 7.4 2.6e-38 132.6 7.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|55377508|ref|YP_135358.1| - 4.3e-12 45.7 1.1 1.6e-11 43.8 1.1 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|55377508|ref|YP_135358.1| - 1.3e-05 24.5 0.0 4e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|55377508|ref|YP_135358.1| - 0.15 11.9 4.6 0.37 10.7 4.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence adh_short_C2 PF13561.6 gi|55377509|ref|YP_135359.1| - 1.6e-35 122.8 2.6 2.5e-35 122.1 2.6 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55377509|ref|YP_135359.1| - 1.9e-31 109.0 1.0 2.4e-31 108.7 1.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|55377509|ref|YP_135359.1| - 1e-05 25.5 0.9 1.4e-05 25.1 0.9 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55377509|ref|YP_135359.1| - 0.045 13.2 0.4 0.066 12.7 0.4 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_7 PF13241.6 gi|55377509|ref|YP_135359.1| - 0.17 12.4 0.4 0.31 11.5 0.4 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding HHH_5 PF14520.6 gi|55377509|ref|YP_135359.1| - 0.32 11.6 1.5 0.58 10.8 0.4 1.9 1 1 1 2 2 2 0 Helix-hairpin-helix domain VCBS PF13517.6 gi|55377509|ref|YP_135359.1| - 6.1 7.5 8.8 0.55 10.9 0.4 2.9 2 1 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AMP-binding PF00501.28 gi|55377510|ref|YP_135360.1| - 1.4e-72 244.7 0.0 1.8e-72 244.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55377510|ref|YP_135360.1| - 4.2e-22 78.9 0.1 9.9e-22 77.7 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|55377510|ref|YP_135360.1| - 1.9e-08 34.1 0.1 1.9e-08 34.1 0.1 3.6 4 1 0 4 4 4 1 Acetyl-coenzyme A synthetase N-terminus AbiEi_4 PF13338.6 gi|55377510|ref|YP_135360.1| - 0.083 13.1 0.1 0.73 10.0 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin MFS_1 PF07690.16 gi|55377511|ref|YP_135361.1| - 6.6e-36 124.0 56.9 9e-24 84.0 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|55377511|ref|YP_135361.1| - 0.24 10.2 15.2 3.3 6.5 3.6 3.7 2 2 2 4 4 4 0 MFS_1 like family zf-ribbon_3 PF13248.6 gi|55377512|ref|YP_135362.1| - 0.00014 21.1 4.7 0.0037 16.6 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|55377512|ref|YP_135362.1| - 0.00016 21.6 2.2 0.00017 21.5 2.2 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|55377512|ref|YP_135362.1| - 0.00034 20.2 4.9 0.00083 19.0 4.9 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|55377512|ref|YP_135362.1| - 0.00041 20.3 1.8 0.00042 20.3 1.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|55377512|ref|YP_135362.1| - 0.00049 19.8 2.3 0.00061 19.5 2.3 1.3 1 1 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|55377512|ref|YP_135362.1| - 0.0025 17.7 0.9 0.068 13.1 0.9 2.0 1 1 0 1 1 1 1 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|55377512|ref|YP_135362.1| - 0.0026 17.7 2.2 0.0027 17.7 2.2 1.0 1 0 0 1 1 1 1 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|55377512|ref|YP_135362.1| - 0.0028 17.5 1.7 0.0031 17.4 1.7 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|55377512|ref|YP_135362.1| - 0.0042 16.9 2.2 0.005 16.7 2.2 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.13 gi|55377512|ref|YP_135362.1| - 0.0066 16.1 1.5 0.0087 15.7 1.5 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|55377512|ref|YP_135362.1| - 0.0099 15.9 2.3 0.072 13.2 2.3 2.0 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|55377512|ref|YP_135362.1| - 0.01 15.5 5.1 0.1 12.4 5.1 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L37e PF01907.19 gi|55377512|ref|YP_135362.1| - 0.011 15.9 1.7 0.012 15.7 1.7 1.1 1 0 0 1 1 1 0 Ribosomal protein L37e zf-HIT PF04438.16 gi|55377512|ref|YP_135362.1| - 0.012 15.5 3.2 0.1 12.5 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc-ribbons_6 PF07191.12 gi|55377512|ref|YP_135362.1| - 0.016 15.2 1.0 0.019 15.0 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons Vps36-NZF-N PF16988.5 gi|55377512|ref|YP_135362.1| - 0.024 14.0 1.3 1.3 8.4 0.1 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Zn_Tnp_IS1595 PF12760.7 gi|55377512|ref|YP_135362.1| - 0.028 14.4 2.7 0.045 13.7 2.7 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|55377512|ref|YP_135362.1| - 0.038 13.6 1.9 0.25 11.0 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|55377512|ref|YP_135362.1| - 0.042 13.7 2.4 0.11 12.4 2.2 1.7 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|55377512|ref|YP_135362.1| - 0.045 13.5 5.3 1.7 8.4 0.3 2.3 1 1 1 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|55377512|ref|YP_135362.1| - 0.047 13.2 4.0 0.086 12.4 4.0 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|55377512|ref|YP_135362.1| - 0.068 13.2 1.0 0.066 13.2 1.0 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-piccolo PF05715.13 gi|55377512|ref|YP_135362.1| - 0.085 13.0 4.1 1.4 9.1 4.1 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zf-IS66 PF13005.7 gi|55377512|ref|YP_135362.1| - 0.092 13.2 1.4 1.3 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Sgf11 PF08209.11 gi|55377512|ref|YP_135362.1| - 0.17 11.5 3.6 0.81 9.3 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.10 gi|55377512|ref|YP_135362.1| - 0.19 11.9 4.1 0.49 10.6 0.3 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Spt4 PF06093.13 gi|55377512|ref|YP_135362.1| - 0.2 11.8 2.3 0.47 10.6 2.3 1.6 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-TFIIB PF13453.6 gi|55377512|ref|YP_135362.1| - 0.23 10.8 2.9 0.48 9.8 2.9 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-HYPF PF07503.12 gi|55377512|ref|YP_135362.1| - 0.25 11.2 0.5 0.25 11.2 0.5 2.1 1 1 1 2 2 2 0 HypF finger DUF1272 PF06906.11 gi|55377512|ref|YP_135362.1| - 0.33 11.1 0.3 0.33 11.1 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf_Rg PF17915.1 gi|55377512|ref|YP_135362.1| - 0.49 9.8 7.6 10 5.6 7.6 2.0 1 1 0 1 1 1 0 Reverse gyrase zinc finger zf-Mss51 PF13824.6 gi|55377512|ref|YP_135362.1| - 0.5 10.5 5.2 1.3 9.2 0.5 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L32p PF01783.23 gi|55377512|ref|YP_135362.1| - 0.61 10.4 3.2 1.2 9.4 3.2 1.6 1 1 0 1 1 1 0 Ribosomal L32p protein family PAPS_reduct PF01507.19 gi|55377513|ref|YP_135363.1| - 5.8e-17 62.3 0.0 7.1e-13 49.0 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|55377513|ref|YP_135363.1| - 0.023 14.2 0.0 0.092 12.2 0.0 1.8 2 0 0 2 2 2 0 Diphthamide synthase PP-binding_2 PF14573.6 gi|55377513|ref|YP_135363.1| - 0.15 12.3 0.2 0.34 11.2 0.2 1.6 1 0 0 1 1 1 0 Acyl-carrier SpoIIM PF01944.17 gi|55377514|ref|YP_135364.1| - 6.1e-25 88.1 13.2 7.4e-25 87.8 13.2 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M EOS1 PF12326.8 gi|55377514|ref|YP_135364.1| - 0.24 11.3 1.2 0.75 9.7 0.5 2.0 2 0 0 2 2 2 0 N-glycosylation protein Fer2 PF00111.27 gi|55377516|ref|YP_135366.1| - 2.4e-10 40.2 2.2 3.1e-10 39.8 2.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|55377516|ref|YP_135366.1| - 0.021 14.8 0.1 0.025 14.6 0.1 1.1 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.14 gi|55377517|ref|YP_135367.1| - 3.8e-15 55.7 1.4 5.3e-11 42.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|55377517|ref|YP_135367.1| - 1.5e-10 40.8 7.5 2.3e-07 30.3 0.3 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|55377517|ref|YP_135367.1| - 2.7e-09 36.7 2.8 6.7e-08 32.2 2.8 2.3 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|55377517|ref|YP_135367.1| - 3.2e-08 33.4 9.8 0.00011 21.7 2.7 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55377517|ref|YP_135367.1| - 6.6e-08 32.1 4.3 2.8e-05 23.5 0.0 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|55377517|ref|YP_135367.1| - 1.1e-07 31.8 8.2 0.0015 18.2 1.1 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|55377517|ref|YP_135367.1| - 8.7e-07 29.4 9.0 0.00015 22.3 0.7 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55377517|ref|YP_135367.1| - 1.4e-06 27.7 0.3 2.4e-06 26.9 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|55377517|ref|YP_135367.1| - 4.8e-06 26.7 5.2 2.2e-05 24.6 0.7 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|55377517|ref|YP_135367.1| - 7.7e-06 24.9 0.3 0.00016 20.5 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|55377517|ref|YP_135367.1| - 9.6e-05 21.6 2.6 0.024 13.7 0.4 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|55377517|ref|YP_135367.1| - 0.0005 19.4 0.8 0.0005 19.4 0.8 2.1 2 1 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|55377517|ref|YP_135367.1| - 0.0018 18.2 0.0 0.003 17.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|55377517|ref|YP_135367.1| - 0.0037 16.9 0.0 0.0091 15.6 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|55377517|ref|YP_135367.1| - 0.0093 15.3 0.9 0.034 13.4 0.7 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|55377517|ref|YP_135367.1| - 0.022 14.0 0.7 0.022 14.0 0.7 2.0 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|55377517|ref|YP_135367.1| - 0.13 11.6 0.0 0.34 10.2 0.0 1.6 2 0 0 2 2 2 0 ThiF family Pilin_N PF07790.11 gi|55377518|ref|YP_135368.1| - 9.7e-22 77.7 0.3 2.1e-21 76.6 0.3 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PKD PF00801.20 gi|55377518|ref|YP_135368.1| - 0.00083 19.2 0.9 0.073 12.9 0.1 2.3 2 0 0 2 2 2 2 PKD domain FtsH_ext PF06480.15 gi|55377518|ref|YP_135368.1| - 0.065 13.6 0.1 0.092 13.1 0.1 1.2 1 0 0 1 1 1 0 FtsH Extracellular Peptidase_M20 PF01546.28 gi|55377519|ref|YP_135369.1| - 4.1e-26 92.0 6.3 7.1e-26 91.2 6.3 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|55377519|ref|YP_135369.1| - 1.2e-12 47.7 0.4 2.6e-12 46.6 0.4 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribosomal_S10 PF00338.22 gi|55377520|ref|YP_135370.1| - 7.6e-12 45.3 0.0 1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.28 gi|55377521|ref|YP_135371.1| - 1.8e-17 63.6 0.7 2.1e-17 63.4 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|55377521|ref|YP_135371.1| - 0.03 14.8 0.0 0.04 14.3 0.0 1.3 1 1 0 1 1 1 0 AAA domain PhoLip_ATPase_C PF16212.5 gi|55377522|ref|YP_135372.1| - 0.022 14.5 1.5 0.026 14.3 1.5 1.0 1 0 0 1 1 1 0 Phospholipid-translocating P-type ATPase C-terminal Phage_holin_2_1 PF04971.12 gi|55377522|ref|YP_135372.1| - 0.027 14.5 0.2 0.027 14.5 0.2 2.7 2 1 1 3 3 3 0 Bacteriophage P21 holin S RseC_MucC PF04246.12 gi|55377522|ref|YP_135372.1| - 2.3 8.2 11.7 0.53 10.2 6.8 2.0 1 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC TrmB PF01978.19 gi|55377524|ref|YP_135374.1| - 0.023 14.5 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MacB_PCD PF12704.7 gi|55377525|ref|YP_135375.1| - 5.3e-19 69.3 10.6 5.3e-19 69.3 10.6 2.3 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|55377525|ref|YP_135375.1| - 2.4e-14 53.6 0.6 2.4e-14 53.6 0.6 3.0 3 0 0 3 3 3 1 FtsX-like permease family Neuralized PF07177.12 gi|55377525|ref|YP_135375.1| - 0.13 12.2 0.1 0.29 11.1 0.1 1.5 1 1 0 1 1 1 0 Neuralized ABC_tran PF00005.27 gi|55377526|ref|YP_135376.1| - 4.5e-30 105.0 0.0 7.4e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377526|ref|YP_135376.1| - 0.00046 20.1 2.8 0.43 10.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377526|ref|YP_135376.1| - 0.0022 17.5 0.1 0.058 12.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55377526|ref|YP_135376.1| - 0.017 14.9 0.4 0.029 14.1 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|55377526|ref|YP_135376.1| - 0.029 14.3 0.2 0.046 13.6 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_30 PF13604.6 gi|55377526|ref|YP_135376.1| - 0.036 13.8 0.1 0.098 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55377526|ref|YP_135376.1| - 0.088 13.2 0.7 0.19 12.1 0.7 1.8 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|55377526|ref|YP_135376.1| - 0.16 12.3 1.2 3.5 7.9 0.3 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|55377526|ref|YP_135376.1| - 0.73 10.0 2.7 4.3 7.5 2.7 2.2 1 1 0 1 1 1 0 AAA domain LolA_like PF17131.4 gi|55377527|ref|YP_135377.1| - 1.5e-07 31.3 4.5 2.7e-06 27.3 0.1 2.6 2 1 1 3 3 3 2 Outer membrane lipoprotein-sorting protein DUF4367 PF14285.6 gi|55377527|ref|YP_135377.1| - 0.015 15.7 0.0 0.015 15.7 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4367) LolA PF03548.15 gi|55377527|ref|YP_135377.1| - 0.029 14.1 0.1 0.085 12.6 0.0 1.8 2 0 0 2 2 2 0 Outer membrane lipoprotein carrier protein LolA TOBE_2 PF08402.10 gi|55377527|ref|YP_135377.1| - 0.059 13.5 1.0 0.27 11.4 0.2 2.5 2 0 0 2 2 2 0 TOBE domain Mut7-C PF01927.16 gi|55377528|ref|YP_135378.1| - 1.1e-42 145.6 0.0 1.3e-42 145.4 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|55377528|ref|YP_135378.1| - 2.4e-05 24.0 0.3 5.4e-05 22.9 0.2 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF5615) DZR PF12773.7 gi|55377528|ref|YP_135378.1| - 0.081 13.0 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|55377528|ref|YP_135378.1| - 0.089 12.9 0.3 15 5.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|55377528|ref|YP_135378.1| - 0.24 11.5 3.0 0.59 10.2 3.0 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DNA_pol_B_thumb PF14791.6 gi|55377529|ref|YP_135379.1| - 1.2e-22 79.9 0.0 2.8e-22 78.6 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|55377529|ref|YP_135379.1| - 5.9e-16 58.6 3.9 6.7e-14 52.0 0.2 3.8 3 1 1 4 4 4 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|55377529|ref|YP_135379.1| - 1.5e-12 47.9 0.2 1.3e-11 44.9 0.1 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.19 gi|55377529|ref|YP_135379.1| - 2.4e-08 34.4 0.0 4.6e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|55377529|ref|YP_135379.1| - 0.00019 21.5 4.2 0.6 10.2 0.1 4.4 4 1 1 5 5 5 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|55377529|ref|YP_135379.1| - 0.00051 20.2 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.23 gi|55377529|ref|YP_135379.1| - 0.025 14.5 0.1 0.21 11.5 0.1 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif CHAT PF12770.7 gi|55377530|ref|YP_135380.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 CHAT domain Response_reg PF00072.24 gi|55377532|ref|YP_135382.1| - 2.1e-20 73.0 0.1 3.2e-20 72.4 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|55377532|ref|YP_135382.1| - 4e-06 27.0 0.0 1.7e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|55377532|ref|YP_135382.1| - 5.8e-06 26.3 0.0 1.4e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.15 gi|55377532|ref|YP_135382.1| - 8.3e-06 26.0 0.1 1.8e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_9 PF13426.7 gi|55377532|ref|YP_135382.1| - 9.3e-05 22.6 0.0 0.00087 19.5 0.0 2.3 3 0 0 3 3 3 1 PAS domain PAS_3 PF08447.12 gi|55377532|ref|YP_135382.1| - 0.0023 18.2 0.0 0.0058 16.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|55377532|ref|YP_135382.1| - 0.0046 16.9 0.0 0.021 14.9 0.0 2.1 2 0 0 2 2 2 1 PAS domain Rhomboid PF01694.22 gi|55377533|ref|YP_135383.1| - 1.8e-27 96.2 13.4 3e-27 95.5 13.4 1.3 1 0 0 1 1 1 1 Rhomboid family zf-AN1 PF01428.16 gi|55377533|ref|YP_135383.1| - 3.6e-12 46.2 6.9 5e-12 45.8 6.9 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|55377533|ref|YP_135383.1| - 0.0019 18.7 0.4 0.0019 18.7 0.4 1.8 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Endonuclease_5 PF04493.14 gi|55377534|ref|YP_135384.1| - 5.9e-55 186.0 0.0 7.6e-55 185.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V UvrC_HhH_N PF08459.11 gi|55377534|ref|YP_135384.1| - 0.025 14.5 0.1 0.15 11.9 0.1 1.9 1 1 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal Acetyltransf_1 PF00583.25 gi|55377534|ref|YP_135384.1| - 0.063 13.5 0.0 0.19 11.9 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family DUF99 PF01949.16 gi|55377534|ref|YP_135384.1| - 0.14 11.6 0.5 0.61 9.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF99 adh_short PF00106.25 gi|55377535|ref|YP_135385.1| - 1.1e-50 171.8 0.0 1.4e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55377535|ref|YP_135385.1| - 7.3e-41 140.3 0.0 9e-41 140.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55377535|ref|YP_135385.1| - 1.2e-12 48.1 0.0 2.1e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55377535|ref|YP_135385.1| - 2.3e-07 30.5 0.0 6.7e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|55377535|ref|YP_135385.1| - 0.00011 21.4 0.0 0.00035 19.8 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.10 gi|55377535|ref|YP_135385.1| - 0.00015 21.2 0.0 0.00019 20.9 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) NmrA PF05368.13 gi|55377535|ref|YP_135385.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Eno-Rase_NADH_b PF12242.8 gi|55377535|ref|YP_135385.1| - 0.14 12.0 0.1 0.31 10.8 0.0 1.6 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ArsA_ATPase PF02374.15 gi|55377536|ref|YP_135386.1| - 1.2e-78 264.4 0.0 4.4e-52 177.2 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|55377536|ref|YP_135386.1| - 1.8e-07 31.2 0.0 4.4e-07 30.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|55377536|ref|YP_135386.1| - 8.1e-07 29.1 0.0 6.1e-05 23.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|55377536|ref|YP_135386.1| - 8.3e-05 22.1 0.2 0.0091 15.5 0.0 2.9 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|55377536|ref|YP_135386.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.16 gi|55377536|ref|YP_135386.1| - 0.054 13.0 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|55377536|ref|YP_135386.1| - 0.055 13.2 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|55377536|ref|YP_135386.1| - 0.1 12.1 1.5 0.19 11.3 0.1 2.2 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|55377536|ref|YP_135386.1| - 0.11 12.1 0.4 1.1 8.8 0.3 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATPase PF06745.13 gi|55377536|ref|YP_135386.1| - 0.22 10.8 0.0 0.49 9.7 0.0 1.5 1 0 0 1 1 1 0 KaiC Helicase_C_2 PF13307.6 gi|55377537|ref|YP_135387.1| - 1.5e-24 87.1 0.0 2.9e-24 86.1 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|55377537|ref|YP_135387.1| - 3.5e-15 56.1 0.0 3.6e-12 46.2 0.0 2.1 2 0 0 2 2 2 2 DEAD_2 DEAD PF00270.29 gi|55377537|ref|YP_135387.1| - 1.2e-08 35.0 0.0 0.0026 17.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|55377537|ref|YP_135387.1| - 1.8e-07 31.3 0.0 0.0032 17.5 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|55377537|ref|YP_135387.1| - 4e-06 26.4 0.4 0.00095 18.7 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.6 gi|55377537|ref|YP_135387.1| - 0.0021 18.4 0.2 0.033 14.5 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55377537|ref|YP_135387.1| - 0.0023 17.7 0.5 0.09 12.5 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|55377537|ref|YP_135387.1| - 0.0027 18.0 0.7 3.2 8.0 0.0 2.9 2 1 0 2 2 2 2 AAA domain zf_Rg PF17915.1 gi|55377537|ref|YP_135387.1| - 0.028 13.8 0.0 0.071 12.5 0.0 1.7 1 0 0 1 1 1 0 Reverse gyrase zinc finger DUF2075 PF09848.9 gi|55377537|ref|YP_135387.1| - 0.033 13.5 0.2 1.5 8.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) UTP25 PF06862.12 gi|55377537|ref|YP_135387.1| - 0.039 12.7 0.0 0.061 12.1 0.0 1.2 1 0 0 1 1 1 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 AAA_11 PF13086.6 gi|55377537|ref|YP_135387.1| - 0.062 13.1 0.0 0.56 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain TBP PF00352.21 gi|55377538|ref|YP_135388.1| - 1.8e-57 191.3 0.0 5.9e-28 96.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|55377538|ref|YP_135388.1| - 6.1e-05 23.1 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|55377538|ref|YP_135388.1| - 7.4e-05 23.0 0.0 0.014 15.7 0.0 2.3 1 1 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment PucR PF07905.11 gi|55377538|ref|YP_135388.1| - 0.071 13.4 0.0 5.4 7.3 0.0 2.5 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family Ribosomal_S30AE PF02482.19 gi|55377538|ref|YP_135388.1| - 0.15 12.8 0.0 24 5.8 0.0 2.2 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein TRAM PF01938.20 gi|55377539|ref|YP_135389.1| - 2.1e-14 53.2 1.9 2.6e-14 52.9 1.2 1.6 2 0 0 2 2 2 1 TRAM domain CoA_transf_3 PF02515.17 gi|55377540|ref|YP_135390.1| - 2.3e-124 415.3 0.0 2.6e-124 415.1 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.19 gi|55377541|ref|YP_135391.1| - 3.7e-20 72.2 0.6 4.5e-20 71.9 0.6 1.1 1 0 0 1 1 1 1 B12 binding domain Flg_hook PF02120.16 gi|55377541|ref|YP_135391.1| - 0.057 13.3 0.2 1.3 9.0 0.0 2.7 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK Peripla_BP_6 PF13458.6 gi|55377541|ref|YP_135391.1| - 0.066 12.9 0.6 0.36 10.5 0.4 1.8 1 1 1 2 2 2 0 Periplasmic binding protein SNAPc_SNAP43 PF09808.9 gi|55377541|ref|YP_135391.1| - 0.069 13.1 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 Met_asp_mut_E PF06368.11 gi|55377542|ref|YP_135392.1| - 2.7e-205 682.0 0.0 3.1e-205 681.8 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.11 gi|55377543|ref|YP_135393.1| - 2.9e-116 387.0 0.0 3.8e-116 386.6 0.0 1.1 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|55377543|ref|YP_135393.1| - 5.9e-69 230.8 0.6 1.2e-68 229.8 0.6 1.5 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|55377543|ref|YP_135393.1| - 2e-11 43.9 0.2 4.3e-11 42.8 0.2 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MaoC_dehydratas PF01575.19 gi|55377544|ref|YP_135394.1| - 1.5e-05 24.5 0.0 0.00022 20.8 0.0 2.1 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|55377544|ref|YP_135394.1| - 0.001 19.2 0.1 0.013 15.6 0.0 2.3 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.6 gi|55377544|ref|YP_135394.1| - 0.0063 17.0 0.0 0.071 13.6 0.0 2.1 2 0 0 2 2 2 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|55377544|ref|YP_135394.1| - 0.17 12.3 0.6 0.83 10.0 0.0 2.4 2 1 0 2 2 2 0 Thioesterase superfamily HpcH_HpaI PF03328.14 gi|55377545|ref|YP_135395.1| - 1.8e-16 60.0 0.1 9e-16 57.7 0.0 2.1 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.22 gi|55377545|ref|YP_135395.1| - 1.9e-05 23.1 0.0 0.00021 19.7 0.0 2.1 2 1 0 2 2 2 1 Malate synthase C-C_Bond_Lyase PF15617.6 gi|55377545|ref|YP_135395.1| - 0.00012 21.4 0.0 0.37 9.9 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Aminotran_1_2 PF00155.21 gi|55377546|ref|YP_135396.1| - 9.3e-47 159.9 0.0 1.1e-46 159.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|55377546|ref|YP_135396.1| - 1.2e-07 31.1 0.0 2.6e-07 29.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|55377546|ref|YP_135396.1| - 0.00014 21.3 0.0 0.0002 20.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|55377546|ref|YP_135396.1| - 0.00015 20.5 0.0 0.00019 20.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|55377546|ref|YP_135396.1| - 0.0082 15.1 0.0 0.025 13.5 0.0 1.7 2 0 0 2 2 2 1 Allinase CinA PF02464.17 gi|55377548|ref|YP_135398.1| - 5.1e-59 198.3 1.0 5.9e-59 198.1 1.0 1.0 1 0 0 1 1 1 1 Competence-damaged protein UPF0254 PF06787.11 gi|55377548|ref|YP_135398.1| - 0.0071 16.1 0.1 2.4 7.9 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0254) YdjM PF04307.14 gi|55377549|ref|YP_135399.1| - 2.7e-13 49.6 5.2 2.9e-12 46.2 5.2 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|55377549|ref|YP_135399.1| - 9.8e-06 25.7 0.3 1.2e-05 25.3 0.3 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.6 gi|55377550|ref|YP_135400.1| - 1.4e-07 31.1 0.2 4.1e-07 29.6 0.2 1.8 1 0 0 1 1 1 1 PHP-associated Spt5-NGN PF03439.13 gi|55377551|ref|YP_135401.1| - 2.3e-24 85.1 0.1 3.6e-24 84.5 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|55377551|ref|YP_135401.1| - 1.3e-07 31.3 0.3 1.3e-07 31.3 0.3 2.4 3 0 0 3 3 3 1 KOW motif Glyco_hydro_65C PF03633.15 gi|55377551|ref|YP_135401.1| - 0.1 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DbpA PF03880.15 gi|55377551|ref|YP_135401.1| - 0.12 12.4 0.3 0.31 11.1 0.1 1.7 2 0 0 2 2 2 0 DbpA RNA binding domain SecE PF00584.20 gi|55377552|ref|YP_135402.1| - 0.00013 21.9 0.3 0.00016 21.5 0.3 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex MCPsignal PF00015.21 gi|55377553|ref|YP_135403.1| - 2.1e-41 141.6 40.0 4.3e-41 140.6 25.0 6.4 4 2 3 7 7 7 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|55377553|ref|YP_135403.1| - 3.4e-10 40.2 2.0 3.4e-10 40.2 2.0 5.9 4 2 1 5 5 4 1 Cache domain HAMP PF00672.25 gi|55377553|ref|YP_135403.1| - 5.2e-09 36.3 15.1 1.9e-06 28.2 0.1 6.2 5 2 1 6 6 5 2 HAMP domain EzrA PF06160.12 gi|55377553|ref|YP_135403.1| - 1.1e-06 27.1 31.5 0.00059 18.2 9.0 4.1 3 1 1 4 4 4 3 Septation ring formation regulator, EzrA Laminin_II PF06009.12 gi|55377553|ref|YP_135403.1| - 9.7e-05 22.4 42.1 0.027 14.5 0.3 5.4 2 2 3 5 5 5 3 Laminin Domain II DUF948 PF06103.11 gi|55377553|ref|YP_135403.1| - 0.00043 20.5 45.2 0.21 11.9 2.8 7.6 4 2 3 7 7 7 4 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|55377553|ref|YP_135403.1| - 0.0075 16.5 37.3 1.4 9.3 2.4 5.9 2 2 3 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ZapB PF06005.12 gi|55377553|ref|YP_135403.1| - 0.011 16.2 2.2 0.011 16.2 2.2 5.5 2 1 2 4 4 4 0 Cell division protein ZapB Fib_alpha PF08702.10 gi|55377553|ref|YP_135403.1| - 0.03 14.5 29.1 0.097 12.9 6.7 4.7 2 1 2 5 5 5 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|55377553|ref|YP_135403.1| - 0.055 13.5 39.9 0.34 11.0 3.8 6.5 2 2 4 7 7 7 0 Protein of unknown function (DUF1664) DUF2203 PF09969.9 gi|55377553|ref|YP_135403.1| - 0.088 13.5 35.7 0.037 14.7 4.0 5.4 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) DUF4559 PF15112.6 gi|55377553|ref|YP_135403.1| - 0.1 12.3 22.3 0.026 14.2 4.8 3.3 3 1 1 4 4 3 0 Domain of unknown function (DUF4559) Syntaxin_2 PF14523.6 gi|55377553|ref|YP_135403.1| - 0.11 12.8 22.6 9.8 6.6 2.7 6.0 1 1 5 6 6 6 0 Syntaxin-like protein NPV_P10 PF05531.12 gi|55377553|ref|YP_135403.1| - 0.22 12.0 31.1 3.4 8.2 1.4 6.2 3 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Dynamin_M PF01031.20 gi|55377553|ref|YP_135403.1| - 0.26 10.5 14.8 0.38 9.9 2.3 2.8 2 1 0 2 2 2 0 Dynamin central region Bacillus_HBL PF05791.11 gi|55377553|ref|YP_135403.1| - 0.32 10.8 15.6 1 9.2 1.1 4.1 2 1 1 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) HMMR_N PF15905.5 gi|55377553|ref|YP_135403.1| - 0.37 10.2 38.4 0.1 12.0 11.9 4.2 1 1 3 4 4 4 0 Hyaluronan mediated motility receptor N-terminal RPW8 PF05659.11 gi|55377553|ref|YP_135403.1| - 0.43 10.3 14.8 49 3.6 0.0 6.3 3 2 4 7 7 7 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Exonuc_VII_S PF02609.16 gi|55377553|ref|YP_135403.1| - 0.55 10.3 7.6 6.5 6.9 0.1 4.1 3 0 0 3 3 3 0 Exonuclease VII small subunit Serine_rich PF08824.10 gi|55377553|ref|YP_135403.1| - 0.64 10.0 13.6 0.24 11.4 1.0 3.3 1 1 1 3 3 3 0 Serine rich protein interaction domain Prominin PF05478.11 gi|55377553|ref|YP_135403.1| - 0.74 7.7 23.1 0.031 12.3 10.2 2.7 1 1 2 3 3 3 0 Prominin Seryl_tRNA_N PF02403.22 gi|55377553|ref|YP_135403.1| - 1.7 8.9 37.3 0.6 10.4 2.5 6.2 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain UPF0242 PF06785.11 gi|55377553|ref|YP_135403.1| - 1.8 8.6 30.1 2.6 8.1 0.1 4.0 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus CALCOCO1 PF07888.11 gi|55377553|ref|YP_135403.1| - 2.1 7.1 38.8 0.92 8.3 5.6 3.3 1 1 2 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like APG17 PF04108.12 gi|55377553|ref|YP_135403.1| - 2.2 7.3 39.4 0.17 11.0 9.7 3.6 2 1 1 3 3 3 0 Autophagy protein Apg17 Holin_BhlA PF10960.8 gi|55377553|ref|YP_135403.1| - 2.8 8.0 7.0 1 9.4 0.3 3.3 3 0 0 3 3 2 0 BhlA holin family DUF2779 PF11074.8 gi|55377553|ref|YP_135403.1| - 3.3 8.2 5.1 18 5.8 0.1 3.6 4 1 0 4 4 3 0 Domain of unknown function(DUF2779) IFT57 PF10498.9 gi|55377553|ref|YP_135403.1| - 3.4 6.5 40.0 0.76 8.7 4.0 3.8 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 TPR_MLP1_2 PF07926.12 gi|55377553|ref|YP_135403.1| - 4.1 7.5 46.9 1.5 8.9 0.6 4.9 2 1 2 4 4 4 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|55377553|ref|YP_135403.1| - 4.7 6.0 43.3 0.56 9.0 9.3 4.2 1 1 4 5 5 5 0 Spc7 kinetochore protein XhlA PF10779.9 gi|55377553|ref|YP_135403.1| - 4.8 7.4 20.5 3.9 7.8 0.3 6.0 4 2 1 6 6 6 0 Haemolysin XhlA Mod_r PF07200.13 gi|55377553|ref|YP_135403.1| - 4.9 7.2 39.7 1 9.4 0.5 5.6 3 2 3 6 6 5 0 Modifier of rudimentary (Mod(r)) protein DUF3837 PF12939.7 gi|55377553|ref|YP_135403.1| - 4.9 7.6 12.2 0.11 13.0 1.3 3.8 3 2 1 4 4 3 0 Domain of unknown function (DUF3837) Atg14 PF10186.9 gi|55377553|ref|YP_135403.1| - 5.3 6.0 23.7 4 6.4 7.8 3.7 2 1 2 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMPIT PF07851.13 gi|55377553|ref|YP_135403.1| - 6.4 5.9 28.7 0.14 11.4 4.2 4.5 1 1 4 5 5 5 0 TMPIT-like protein Dna2 PF08696.11 gi|55377553|ref|YP_135403.1| - 7.3 6.3 13.3 1.2 8.9 2.4 3.5 2 2 0 2 2 2 0 DNA replication factor Dna2 CENP-F_leu_zip PF10473.9 gi|55377553|ref|YP_135403.1| - 7.4 6.6 43.0 0.59 10.1 5.6 4.9 1 1 4 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AIP3 PF03915.13 gi|55377553|ref|YP_135403.1| - 8 5.4 37.3 2.4 7.2 11.4 3.7 1 1 3 4 4 4 0 Actin interacting protein 3 Peripla_BP_6 PF13458.6 gi|55377554|ref|YP_135404.1| - 1e-35 124.1 13.2 1.4e-35 123.6 13.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|55377554|ref|YP_135404.1| - 1.5e-21 76.9 0.0 2.6e-21 76.2 0.0 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|55377554|ref|YP_135404.1| - 5.3e-05 22.4 0.2 0.00072 18.6 0.1 2.2 2 1 0 2 2 2 1 Periplasmic binding protein domain DUF4649 PF15507.6 gi|55377554|ref|YP_135404.1| - 0.096 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4649) Tubulin PF00091.25 gi|55377555|ref|YP_135405.1| - 1.1e-40 139.9 0.4 2e-40 139.1 0.4 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|55377555|ref|YP_135405.1| - 1.2e-33 115.2 1.5 3.5e-33 113.8 0.5 2.4 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|55377555|ref|YP_135405.1| - 0.0063 16.4 1.5 0.019 14.8 0.2 2.2 2 0 0 2 2 2 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|55377555|ref|YP_135405.1| - 0.15 11.2 8.2 0.13 11.4 1.1 2.4 1 1 0 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|55377556|ref|YP_135406.1| - 7.5e-63 211.8 0.0 1.2e-62 211.1 0.0 1.3 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Na_Ca_ex PF01699.24 gi|55377557|ref|YP_135407.1| - 3e-16 59.7 20.1 4e-09 36.6 3.2 2.8 2 1 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.11 gi|55377558|ref|YP_135408.1| - 5.2e-26 90.7 0.0 1.4e-25 89.3 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|55377558|ref|YP_135408.1| - 2.7e-11 43.0 0.2 2.7e-11 43.0 0.2 1.8 2 0 0 2 2 2 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|55377558|ref|YP_135408.1| - 6.4e-11 42.5 0.0 1e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|55377558|ref|YP_135408.1| - 0.00011 22.4 0.0 0.00076 19.7 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|55377558|ref|YP_135408.1| - 0.00022 20.7 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|55377558|ref|YP_135408.1| - 0.00038 20.1 0.1 0.00073 19.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain adh_short PF00106.25 gi|55377558|ref|YP_135408.1| - 0.00047 19.7 0.5 0.0014 18.1 0.5 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|55377558|ref|YP_135408.1| - 0.00061 20.1 1.0 0.003 17.8 1.0 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|55377558|ref|YP_135408.1| - 0.0008 20.0 0.1 0.0014 19.1 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|55377558|ref|YP_135408.1| - 0.011 14.9 3.1 0.02 14.0 3.1 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_10 PF13460.6 gi|55377558|ref|YP_135408.1| - 0.028 14.3 1.6 0.1 12.4 0.6 2.0 2 0 0 2 2 2 0 NAD(P)H-binding 3HCDH_N PF02737.18 gi|55377558|ref|YP_135408.1| - 0.039 13.9 0.2 0.061 13.2 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|55377558|ref|YP_135408.1| - 0.097 12.3 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|55377558|ref|YP_135408.1| - 0.2 10.7 0.4 0.26 10.3 0.4 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A HHH_5 PF14520.6 gi|55377559|ref|YP_135409.1| - 6.5e-08 33.1 0.3 1e-07 32.4 0.3 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|55377559|ref|YP_135409.1| - 0.00016 21.9 0.0 0.0014 18.8 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|55377559|ref|YP_135409.1| - 0.0011 19.2 0.0 0.0017 18.6 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|55377559|ref|YP_135409.1| - 0.0094 16.2 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|55377559|ref|YP_135409.1| - 0.081 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda PPP4R2 PF09184.11 gi|55377559|ref|YP_135409.1| - 1.1 8.7 12.0 1.5 8.4 12.0 1.2 1 0 0 1 1 1 0 PPP4R2 SOG2 PF10428.9 gi|55377559|ref|YP_135409.1| - 1.6 7.9 8.0 1.7 7.7 8.0 1.0 1 0 0 1 1 1 0 RAM signalling pathway protein DUF966 PF06136.13 gi|55377559|ref|YP_135409.1| - 1.7 8.3 8.7 2.1 8.0 8.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF966) PAP1 PF08601.10 gi|55377559|ref|YP_135409.1| - 3.5 7.3 15.8 4.4 6.9 15.8 1.0 1 0 0 1 1 1 0 Transcription factor PAP1 HNF-1_N PF04814.13 gi|55377559|ref|YP_135409.1| - 6.3 7.4 9.4 1.4e+02 3.0 11.7 1.8 2 0 0 2 2 2 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Lin-8 PF03353.15 gi|55377559|ref|YP_135409.1| - 8 5.9 6.0 10 5.6 6.0 1.1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Dicty_REP PF05086.12 gi|55377559|ref|YP_135409.1| - 8.3 4.2 7.5 9 4.1 7.5 1.0 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Presenilin PF01080.17 gi|55377559|ref|YP_135409.1| - 8.3 5.1 8.0 10 4.8 8.0 1.1 1 0 0 1 1 1 0 Presenilin Raftlin PF15250.6 gi|55377559|ref|YP_135409.1| - 9.2 4.9 7.0 12 4.6 7.0 1.2 1 0 0 1 1 1 0 Raftlin BUD22 PF09073.10 gi|55377559|ref|YP_135409.1| - 9.5 5.4 17.7 12 5.1 17.7 1.1 1 0 0 1 1 1 0 BUD22 Chorismate_bind PF00425.18 gi|55377560|ref|YP_135410.1| - 1.7e-102 342.4 0.0 2.7e-102 341.7 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|55377560|ref|YP_135410.1| - 1.3e-07 31.9 0.0 4.3e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|55377561|ref|YP_135411.1| - 2e-40 138.6 0.0 6.8e-39 133.6 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|55377561|ref|YP_135411.1| - 3.9e-05 23.5 0.2 8.4e-05 22.4 0.2 1.6 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.19 gi|55377562|ref|YP_135412.1| - 1.5e-45 155.8 0.0 1.7e-45 155.6 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Rieske PF00355.26 gi|55377563|ref|YP_135413.1| - 4.5e-08 32.9 0.0 7.8e-08 32.2 0.0 1.3 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Runt PF00853.19 gi|55377563|ref|YP_135413.1| - 0.048 13.2 0.0 0.065 12.8 0.0 1.2 1 0 0 1 1 1 0 Runt domain Zn_Tnp_IS91 PF14319.6 gi|55377564|ref|YP_135414.1| - 0.045 13.8 0.4 0.064 13.3 0.3 1.3 1 1 0 1 1 1 0 Transposase zinc-binding domain MCM_OB PF17207.3 gi|55377564|ref|YP_135414.1| - 0.07 13.0 1.2 0.14 12.0 0.9 1.6 1 1 1 2 2 2 0 MCM OB domain FYDLN_acid PF09538.10 gi|55377564|ref|YP_135414.1| - 0.27 11.9 5.0 0.18 12.5 2.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) OrfB_Zn_ribbon PF07282.11 gi|55377564|ref|YP_135414.1| - 0.59 10.1 3.9 1 9.3 3.2 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Usp PF00582.26 gi|55377565|ref|YP_135415.1| - 1.8e-64 216.5 7.0 1.2e-33 116.5 0.4 2.0 2 0 0 2 2 2 2 Universal stress protein family Lactamase_B_4 PF13691.6 gi|55377565|ref|YP_135415.1| - 0.023 14.4 0.0 6.3 6.6 0.0 2.4 2 0 0 2 2 2 0 tRNase Z endonuclease ETF PF01012.21 gi|55377565|ref|YP_135415.1| - 0.037 13.9 3.8 3.6 7.5 0.4 3.1 2 2 0 2 2 2 0 Electron transfer flavoprotein domain FAD_binding_6 PF00970.24 gi|55377566|ref|YP_135416.1| - 3e-11 43.6 0.0 4e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.19 gi|55377567|ref|YP_135417.1| - 7.4e-61 205.8 0.5 1.1e-60 205.3 0.5 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|55377567|ref|YP_135417.1| - 4.3e-39 134.4 0.1 1.2e-38 133.0 0.1 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|55377567|ref|YP_135417.1| - 4e-06 26.6 0.2 7.8e-06 25.6 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|55377567|ref|YP_135417.1| - 0.00035 20.8 0.0 0.00085 19.6 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|55377568|ref|YP_135418.1| - 6.3e-32 110.5 0.3 9.4e-32 109.9 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|55377568|ref|YP_135418.1| - 1.3e-19 70.1 0.2 3.5e-19 68.7 0.2 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Methyltransf_11 PF08241.12 gi|55377569|ref|YP_135419.1| - 8e-21 74.5 0.0 1.5e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55377569|ref|YP_135419.1| - 3.7e-20 72.4 0.0 7.2e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55377569|ref|YP_135419.1| - 1.6e-16 60.5 0.0 2.1e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55377569|ref|YP_135419.1| - 7.7e-12 45.8 0.0 1.4e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55377569|ref|YP_135419.1| - 3e-10 40.2 0.0 5.7e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55377569|ref|YP_135419.1| - 1.4e-09 37.6 0.0 2.2e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|55377569|ref|YP_135419.1| - 2e-05 24.4 0.0 2.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|55377569|ref|YP_135419.1| - 0.0001 21.7 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|55377569|ref|YP_135419.1| - 0.0013 18.7 0.1 0.0023 17.8 0.1 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase FtsJ PF01728.19 gi|55377569|ref|YP_135419.1| - 0.031 14.4 0.0 0.063 13.4 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltr_RsmB-F PF01189.17 gi|55377569|ref|YP_135419.1| - 0.075 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F FAD_binding_7 PF03441.14 gi|55377570|ref|YP_135420.1| - 1.4e-67 227.1 0.6 2e-67 226.6 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|55377570|ref|YP_135420.1| - 3.8e-29 101.8 0.2 6.1e-29 101.1 0.2 1.3 1 0 0 1 1 1 1 DNA photolyase TOBE PF03459.17 gi|55377571|ref|YP_135421.1| - 1.4e-17 63.7 0.6 1.6e-17 63.6 0.6 1.0 1 0 0 1 1 1 1 TOBE domain TOBE_2 PF08402.10 gi|55377571|ref|YP_135421.1| - 0.0033 17.6 0.1 0.0041 17.3 0.1 1.2 1 0 0 1 1 1 1 TOBE domain OB_aCoA_assoc PF01796.17 gi|55377571|ref|YP_135421.1| - 0.064 13.3 0.7 0.17 11.9 0.7 1.7 1 1 0 1 1 1 0 DUF35 OB-fold domain, acyl-CoA-associated Apocytochr_F_C PF01333.19 gi|55377571|ref|YP_135421.1| - 0.074 13.1 0.2 0.084 12.9 0.2 1.1 1 0 0 1 1 1 0 Apocytochrome F, C-terminal TOBE_3 PF12857.7 gi|55377571|ref|YP_135421.1| - 0.1 12.6 0.1 0.16 11.9 0.1 1.5 1 1 0 1 1 1 0 TOBE-like domain DUF667 PF05018.13 gi|55377571|ref|YP_135421.1| - 0.13 11.9 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF667) YdjM PF04307.14 gi|55377572|ref|YP_135422.1| - 1.4e-08 34.2 7.1 3.8e-08 32.8 7.1 1.6 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DAO PF01266.24 gi|55377575|ref|YP_135425.1| - 1.3e-12 48.0 0.0 4.2e-05 23.3 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|55377575|ref|YP_135425.1| - 2.9e-08 33.2 0.0 5.8e-08 32.2 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|55377575|ref|YP_135425.1| - 8.1e-08 31.5 0.0 0.00039 19.4 0.0 3.0 2 1 0 3 3 3 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|55377575|ref|YP_135425.1| - 4.9e-07 29.4 0.1 1.1e-06 28.2 0.1 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55377575|ref|YP_135425.1| - 1e-06 28.2 0.1 4.4e-06 26.2 0.0 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55377575|ref|YP_135425.1| - 2.2e-06 27.0 0.0 1.5e-05 24.3 0.0 1.9 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|55377575|ref|YP_135425.1| - 3e-06 26.2 0.0 0.00033 19.5 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.17 gi|55377575|ref|YP_135425.1| - 0.00011 21.5 0.0 0.0006 19.1 0.0 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|55377575|ref|YP_135425.1| - 0.00027 20.3 0.3 0.013 14.8 0.3 2.8 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|55377575|ref|YP_135425.1| - 0.00034 20.8 0.0 0.00091 19.4 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|55377575|ref|YP_135425.1| - 0.00034 19.8 0.0 0.17 10.9 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|55377575|ref|YP_135425.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|55377575|ref|YP_135425.1| - 0.1 12.8 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox PF00070.27 gi|55377575|ref|YP_135425.1| - 0.13 12.8 0.0 0.3 11.7 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_kinase PF01513.21 gi|55377576|ref|YP_135426.1| - 4.9e-07 29.2 3.0 1.5e-06 27.6 3.0 1.8 1 1 0 1 1 1 1 ATP-NAD kinase Cytochrom_B_C PF00032.17 gi|55377580|ref|YP_135430.1| - 1.1e-08 35.2 0.8 2.6e-08 34.1 0.2 1.9 2 1 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD Rhomboid PF01694.22 gi|55377580|ref|YP_135430.1| - 0.06 13.3 1.4 0.11 12.5 1.4 1.4 1 0 0 1 1 1 0 Rhomboid family Cytochrome_B PF00033.19 gi|55377581|ref|YP_135431.1| - 1.5e-44 152.1 17.4 2e-44 151.7 17.4 1.2 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|55377581|ref|YP_135431.1| - 1e-40 139.5 13.1 2.2e-40 138.4 11.4 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|55377581|ref|YP_135431.1| - 0.00057 20.4 1.9 0.00057 20.4 1.9 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) DUF373 PF04123.13 gi|55377581|ref|YP_135431.1| - 0.0042 16.6 2.4 0.0042 16.6 2.4 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF373) Rieske PF00355.26 gi|55377582|ref|YP_135432.1| - 0.00033 20.5 0.2 0.00052 19.9 0.2 1.5 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Prominin PF05478.11 gi|55377583|ref|YP_135433.1| - 0.33 8.9 0.5 0.41 8.6 0.5 1.0 1 0 0 1 1 1 0 Prominin Copper-bind PF00127.20 gi|55377584|ref|YP_135434.1| - 1.5e-13 51.0 0.1 3.6e-13 49.8 0.1 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|55377584|ref|YP_135434.1| - 0.22 11.5 12.4 0.13 12.2 9.1 2.4 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5337 PF17272.2 gi|55377586|ref|YP_135436.1| - 0.073 12.9 1.3 0.25 11.2 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5337) DUF202 PF02656.15 gi|55377586|ref|YP_135436.1| - 0.12 12.9 2.6 0.15 12.5 0.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Usp PF00582.26 gi|55377587|ref|YP_135437.1| - 3.8e-34 118.2 0.5 6.3e-34 117.5 0.5 1.3 1 1 0 1 1 1 1 Universal stress protein family HhH-GPD PF00730.25 gi|55377588|ref|YP_135438.1| - 4.9e-19 68.8 0.0 6.4e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|55377588|ref|YP_135438.1| - 4.4e-09 35.7 0.2 3.3e-08 33.0 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|55377588|ref|YP_135438.1| - 0.05 14.2 0.0 0.28 11.8 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|55377588|ref|YP_135438.1| - 0.08 13.3 4.1 0.14 12.5 4.1 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III IMS_HHH PF11798.8 gi|55377588|ref|YP_135438.1| - 0.08 13.3 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif Ribosomal_S13 PF00416.22 gi|55377588|ref|YP_135438.1| - 0.13 12.6 0.0 0.31 11.4 0.0 1.6 1 1 0 1 1 1 0 Ribosomal protein S13/S18 Acetyltransf_3 PF13302.7 gi|55377589|ref|YP_135439.1| - 8.4e-19 68.6 0.0 9.7e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55377589|ref|YP_135439.1| - 1.9e-07 31.3 0.0 2.2e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|55377589|ref|YP_135439.1| - 8.6e-06 26.0 0.0 1.1e-05 25.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|55377589|ref|YP_135439.1| - 5.3e-05 22.9 0.0 6.2e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377589|ref|YP_135439.1| - 0.0086 16.0 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|55377590|ref|YP_135440.1| - 7.2e-30 104.5 0.0 8.9e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55377590|ref|YP_135440.1| - 2.1e-11 44.2 0.0 2.4e-11 44.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55377590|ref|YP_135440.1| - 4.7e-11 42.9 0.0 6.4e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|55377590|ref|YP_135440.1| - 5.5e-09 35.9 0.1 9.9e-08 31.8 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377590|ref|YP_135440.1| - 0.026 14.5 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein AhpC-TSA PF00578.21 gi|55377591|ref|YP_135441.1| - 5.3e-17 61.9 0.0 6.2e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55377591|ref|YP_135441.1| - 5.3e-07 29.5 0.0 5.9e-07 29.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin PRC PF05239.16 gi|55377592|ref|YP_135442.1| - 4.1e-10 39.6 0.7 5.2e-10 39.3 0.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|55377592|ref|YP_135442.1| - 0.037 14.3 0.7 0.16 12.3 0.7 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) TrkA_N PF02254.18 gi|55377593|ref|YP_135443.1| - 1.2e-20 73.9 1.8 3.2e-20 72.5 1.8 1.8 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|55377593|ref|YP_135443.1| - 1e-11 44.9 2.9 9.8e-11 41.8 0.7 2.4 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|55377593|ref|YP_135443.1| - 1.9e-07 31.6 0.4 9.9e-07 29.3 0.2 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DHHA1 PF02272.19 gi|55377593|ref|YP_135443.1| - 8.6e-07 29.5 0.1 5.7e-06 26.8 0.0 2.3 2 0 0 2 2 2 1 DHHA1 domain Sacchrp_dh_NADP PF03435.18 gi|55377593|ref|YP_135443.1| - 1.2e-06 28.8 1.0 1.1e-05 25.7 0.3 2.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|55377593|ref|YP_135443.1| - 2.9e-06 27.0 0.1 9.3e-06 25.4 0.0 1.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|55377593|ref|YP_135443.1| - 3.2e-05 23.6 0.3 6.9e-05 22.5 0.3 1.6 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|55377593|ref|YP_135443.1| - 9.3e-05 22.6 0.0 0.00018 21.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|55377593|ref|YP_135443.1| - 0.0002 21.8 1.8 0.00051 20.4 1.4 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|55377593|ref|YP_135443.1| - 0.00093 18.8 0.1 0.0021 17.6 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|55377593|ref|YP_135443.1| - 0.0019 17.7 1.1 0.013 15.0 0.1 2.3 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family adh_short PF00106.25 gi|55377593|ref|YP_135443.1| - 0.002 17.6 1.5 0.0035 16.8 0.4 1.9 2 1 0 2 2 2 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|55377593|ref|YP_135443.1| - 0.0027 17.7 0.0 0.0055 16.7 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|55377593|ref|YP_135443.1| - 0.0034 17.3 0.1 0.0096 15.8 0.1 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|55377593|ref|YP_135443.1| - 0.004 17.2 0.1 0.0093 16.0 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|55377593|ref|YP_135443.1| - 0.016 14.6 0.7 0.045 13.1 0.7 1.8 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|55377593|ref|YP_135443.1| - 0.016 14.5 0.0 0.043 13.2 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|55377593|ref|YP_135443.1| - 0.018 14.6 3.8 0.063 12.8 1.1 2.5 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55377593|ref|YP_135443.1| - 0.02 14.8 0.7 0.049 13.5 0.1 2.0 2 0 0 2 2 2 0 KR domain XdhC_C PF13478.6 gi|55377593|ref|YP_135443.1| - 0.087 13.3 0.3 0.33 11.5 0.1 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain Ldh_1_N PF00056.23 gi|55377593|ref|YP_135443.1| - 0.13 12.4 0.5 0.33 11.0 0.5 1.7 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Acetyltransf_10 PF13673.7 gi|55377594|ref|YP_135444.1| - 3.4e-25 88.4 0.0 3.9e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55377594|ref|YP_135444.1| - 1.1e-13 51.5 0.0 1.2e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55377594|ref|YP_135444.1| - 1.4e-10 41.4 0.0 2.2e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55377594|ref|YP_135444.1| - 1.3e-05 25.3 0.1 2.9e-05 24.1 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55377594|ref|YP_135444.1| - 0.00017 21.7 0.0 0.00033 20.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_5 PF13444.6 gi|55377594|ref|YP_135444.1| - 0.00055 20.6 0.2 0.0017 19.0 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377594|ref|YP_135444.1| - 0.033 14.1 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 FR47-like protein PanZ PF12568.8 gi|55377594|ref|YP_135444.1| - 0.07 12.9 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Paramyxo_PNT PF14320.6 gi|55377594|ref|YP_135444.1| - 0.076 12.2 0.0 0.096 11.8 0.0 1.1 1 0 0 1 1 1 0 Phosphoprotein P region PNT disordered IMPDH PF00478.25 gi|55377595|ref|YP_135445.1| - 8.5e-142 472.2 10.1 9.7e-142 472.0 10.1 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|55377595|ref|YP_135445.1| - 1.8e-25 89.1 4.6 4.6e-12 46.2 0.3 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|55377595|ref|YP_135445.1| - 1.7e-12 47.4 8.6 2.1e-06 27.4 3.9 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|55377595|ref|YP_135445.1| - 1.3e-08 34.3 4.5 1.3e-08 34.3 4.5 1.7 2 0 0 2 2 2 1 FMN-dependent dehydrogenase ThiG PF05690.14 gi|55377595|ref|YP_135445.1| - 7.2e-05 22.2 1.4 7.2e-05 22.2 1.4 2.4 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|55377595|ref|YP_135445.1| - 0.00011 21.6 2.0 0.00014 21.2 0.9 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|55377595|ref|YP_135445.1| - 0.00013 21.2 4.7 0.00013 21.2 4.7 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase His_biosynth PF00977.21 gi|55377595|ref|YP_135445.1| - 0.00069 19.1 4.4 0.00078 19.0 0.1 2.4 2 1 1 3 3 3 1 Histidine biosynthesis protein Dus PF01207.17 gi|55377595|ref|YP_135445.1| - 0.0015 17.7 1.9 0.0023 17.1 0.3 2.0 1 1 0 2 2 2 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|55377595|ref|YP_135445.1| - 0.038 13.4 1.1 0.084 12.3 0.2 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Zn-ribbon_8 PF09723.10 gi|55377597|ref|YP_135447.1| - 0.016 15.3 3.2 0.3 11.2 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|55377597|ref|YP_135447.1| - 0.026 14.6 0.2 0.035 14.1 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55377597|ref|YP_135447.1| - 0.12 11.8 2.4 0.42 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Pro_CA PF00484.19 gi|55377598|ref|YP_135448.1| - 2.7e-28 99.3 0.0 3.4e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase CM_2 PF01817.21 gi|55377599|ref|YP_135449.1| - 3.7e-14 52.8 4.3 4.3e-14 52.6 4.3 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF4025 PF13217.6 gi|55377599|ref|YP_135449.1| - 0.019 14.8 0.4 0.034 14.0 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4025) DUF853 PF05872.12 gi|55377599|ref|YP_135449.1| - 0.038 12.6 0.2 0.043 12.4 0.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) GHMP_kinases_N PF00288.26 gi|55377600|ref|YP_135450.1| - 8.8e-12 45.1 3.0 1.2e-11 44.6 1.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain TrkA_N PF02254.18 gi|55377601|ref|YP_135451.1| - 1.2e-28 99.7 1.3 2.2e-28 98.9 1.3 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|55377601|ref|YP_135451.1| - 1.5e-16 60.0 0.6 1.7e-15 56.6 0.0 2.6 3 0 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.17 gi|55377601|ref|YP_135451.1| - 5.3e-06 26.9 0.2 1.6e-05 25.4 0.1 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|55377601|ref|YP_135451.1| - 0.00014 22.1 0.2 0.00022 21.5 0.2 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|55377601|ref|YP_135451.1| - 0.00072 20.0 0.3 0.0012 19.3 0.3 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|55377601|ref|YP_135451.1| - 0.0015 19.1 0.1 0.0027 18.2 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|55377601|ref|YP_135451.1| - 0.0016 18.9 0.3 0.013 16.0 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|55377601|ref|YP_135451.1| - 0.0018 18.2 0.1 0.0025 17.7 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_3 PF13377.6 gi|55377601|ref|YP_135451.1| - 0.0031 17.9 0.2 0.0044 17.4 0.2 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain ADH_zinc_N PF00107.26 gi|55377601|ref|YP_135451.1| - 0.0051 16.8 0.1 0.15 12.0 0.1 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|55377601|ref|YP_135451.1| - 0.0056 16.8 0.1 0.0086 16.1 0.1 1.4 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|55377601|ref|YP_135451.1| - 0.0064 17.3 0.4 0.015 16.1 0.4 1.7 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_N PF03721.14 gi|55377601|ref|YP_135451.1| - 0.007 16.0 1.0 0.1 12.1 0.2 2.2 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|55377601|ref|YP_135451.1| - 0.0091 15.9 0.8 0.015 15.2 0.8 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_2 PF03446.15 gi|55377601|ref|YP_135451.1| - 0.0096 16.1 0.1 0.014 15.6 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|55377601|ref|YP_135451.1| - 0.011 15.4 0.1 0.016 14.8 0.1 1.4 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|55377601|ref|YP_135451.1| - 0.033 13.5 0.0 0.055 12.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|55377601|ref|YP_135451.1| - 0.26 12.0 0.9 0.69 10.6 0.4 2.1 2 1 0 2 2 2 0 PglD N-terminal domain TrkH PF02386.16 gi|55377602|ref|YP_135452.1| - 8.2e-114 380.8 14.7 1e-113 380.5 14.7 1.0 1 0 0 1 1 1 1 Cation transport protein CrgA PF06781.12 gi|55377602|ref|YP_135452.1| - 3.9 7.6 8.2 0.46 10.6 0.3 3.1 3 1 0 3 3 3 0 Cell division protein CrgA TrkH PF02386.16 gi|55377604|ref|YP_135454.1| - 4.7e-66 223.2 11.8 2.8e-34 118.4 0.5 2.0 2 0 0 2 2 2 2 Cation transport protein Usp PF00582.26 gi|55377605|ref|YP_135455.1| - 1.7e-07 31.8 0.9 2.4e-07 31.4 0.9 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF1179 PF06678.11 gi|55377605|ref|YP_135455.1| - 0.27 11.3 1.0 1.2 9.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1179) AA_permease_2 PF13520.6 gi|55377606|ref|YP_135456.1| - 5.5e-46 157.2 46.3 7.9e-46 156.7 46.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|55377606|ref|YP_135456.1| - 8.7e-34 116.9 44.2 1.2e-33 116.4 44.2 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|55377606|ref|YP_135456.1| - 1.1e-17 64.8 6.1 2e-09 38.1 0.3 3.4 2 1 0 2 2 2 2 Universal stress protein family Spore_permease PF03845.13 gi|55377606|ref|YP_135456.1| - 0.00049 19.0 13.8 0.00049 19.0 13.8 1.9 2 0 0 2 2 2 1 Spore germination protein Trp_Tyr_perm PF03222.13 gi|55377606|ref|YP_135456.1| - 0.0019 17.3 23.9 0.0019 17.3 23.9 1.4 1 1 0 1 1 1 1 Tryptophan/tyrosine permease family AAA_26 PF13500.6 gi|55377606|ref|YP_135456.1| - 0.059 13.2 0.0 0.37 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF839 PF05787.13 gi|55377608|ref|YP_135458.1| - 6.1e-22 78.5 15.3 1.3e-18 67.5 11.3 3.9 2 1 0 3 3 3 2 Bacterial protein of unknown function (DUF839) PTPA PF03095.15 gi|55377608|ref|YP_135458.1| - 0.11 11.9 1.5 0.13 11.7 0.2 1.6 2 0 0 2 2 2 0 Phosphotyrosyl phosphate activator (PTPA) protein Cohesin PF00963.18 gi|55377610|ref|YP_135460.1| - 0.0026 18.0 0.4 0.0026 18.0 0.4 2.0 1 1 1 2 2 2 1 Cohesin domain DUF839 PF05787.13 gi|55377611|ref|YP_135461.1| - 5.2e-18 65.5 18.8 8e-15 55.0 16.0 3.9 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) Dockerin_1 PF00404.18 gi|55377611|ref|YP_135461.1| - 0.018 15.2 5.7 0.025 14.8 1.7 2.8 2 0 0 2 2 2 0 Dockerin type I domain EF-hand_6 PF13405.6 gi|55377611|ref|YP_135461.1| - 0.018 14.9 2.0 5.9 7.1 0.0 2.9 2 0 0 2 2 2 0 EF-hand domain EF-hand_1 PF00036.32 gi|55377611|ref|YP_135461.1| - 0.042 13.4 4.3 2.1 8.1 0.1 3.3 3 0 0 3 3 3 0 EF hand EF-hand_7 PF13499.6 gi|55377611|ref|YP_135461.1| - 0.075 13.5 0.6 0.27 11.7 0.6 2.0 1 0 0 1 1 1 0 EF-hand domain pair PadR PF03551.14 gi|55377613|ref|YP_135463.1| - 6.7e-08 32.4 0.1 1e-07 31.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|55377613|ref|YP_135463.1| - 0.029 14.4 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF505 PF04458.12 gi|55377613|ref|YP_135463.1| - 0.087 11.2 0.0 0.088 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TrmB PF01978.19 gi|55377613|ref|YP_135463.1| - 0.12 12.2 0.0 0.17 11.8 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|55377613|ref|YP_135463.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|55377613|ref|YP_135463.1| - 0.17 12.0 0.0 0.47 10.7 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain VirB3 PF05101.13 gi|55377614|ref|YP_135464.1| - 0.057 13.7 1.4 0.071 13.3 1.4 1.2 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Acyl-CoA_dh_1 PF00441.24 gi|55377615|ref|YP_135465.1| - 7.7e-50 169.0 1.2 1.1e-49 168.5 1.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|55377615|ref|YP_135465.1| - 1.8e-38 131.6 1.1 5.7e-38 130.0 0.2 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55377615|ref|YP_135465.1| - 7.1e-27 94.3 1.8 1.2e-26 93.6 1.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55377615|ref|YP_135465.1| - 6.1e-22 77.6 0.0 1.1e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain 3HCDH_N PF02737.18 gi|55377616|ref|YP_135466.1| - 1.3e-62 210.9 3.1 1.6e-62 210.6 3.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|55377616|ref|YP_135466.1| - 4.3e-32 110.6 0.8 2.9e-31 107.9 0.0 2.4 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|55377616|ref|YP_135466.1| - 0.00011 22.4 7.1 0.00074 19.7 7.1 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|55377616|ref|YP_135466.1| - 0.0017 17.8 0.2 0.0027 17.1 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|55377616|ref|YP_135466.1| - 0.0029 18.1 1.9 0.0095 16.5 1.9 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|55377616|ref|YP_135466.1| - 0.024 14.6 0.7 0.049 13.6 0.6 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short_C2 PF13561.6 gi|55377616|ref|YP_135466.1| - 0.028 14.0 1.8 0.04 13.5 1.8 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55377616|ref|YP_135466.1| - 0.028 13.9 1.1 0.042 13.3 1.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|55377616|ref|YP_135466.1| - 0.042 13.4 0.7 0.065 12.8 0.7 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|55377616|ref|YP_135466.1| - 0.065 13.7 0.2 0.1 13.1 0.2 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain ApbA PF02558.16 gi|55377616|ref|YP_135466.1| - 0.14 11.8 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FBPase PF00316.20 gi|55377617|ref|YP_135467.1| - 9.2e-28 97.0 0.1 1.5e-27 96.3 0.1 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PKD PF00801.20 gi|55377618|ref|YP_135468.1| - 3.2e-11 42.9 1.8 3.2e-11 42.9 1.8 3.8 3 0 0 3 3 3 1 PKD domain Big_3_3 PF13750.6 gi|55377618|ref|YP_135468.1| - 0.098 12.3 5.5 0.62 9.7 0.0 3.6 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) DUF3099 PF11298.8 gi|55377619|ref|YP_135469.1| - 0.067 13.3 1.4 0.085 13.0 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) ELFV_dehydrog PF00208.21 gi|55377620|ref|YP_135470.1| - 3.6e-73 246.3 0.9 4.6e-73 245.9 0.9 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|55377620|ref|YP_135470.1| - 4.7e-55 185.0 0.0 7.9e-55 184.3 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|55377620|ref|YP_135470.1| - 0.00036 19.9 0.0 0.00072 19.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|55377620|ref|YP_135470.1| - 0.084 12.2 0.4 0.13 11.5 0.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|55377620|ref|YP_135470.1| - 0.093 12.3 0.1 0.15 11.6 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF4817 PF16087.5 gi|55377620|ref|YP_135470.1| - 0.094 12.5 0.0 1.7 8.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) DUF4251 PF14059.6 gi|55377620|ref|YP_135470.1| - 0.11 12.4 0.2 13 5.7 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4251) Polyketide_cyc PF03364.20 gi|55377621|ref|YP_135471.1| - 8.2e-08 32.5 0.0 1.2e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|55377621|ref|YP_135471.1| - 0.006 16.9 0.1 0.0071 16.6 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport EamA PF00892.20 gi|55377622|ref|YP_135472.1| - 9.1e-17 61.5 9.2 1e-16 61.3 9.2 1.0 1 0 0 1 1 1 1 EamA-like transporter family ExoD PF06055.12 gi|55377622|ref|YP_135472.1| - 0.051 12.9 4.9 0.092 12.1 0.5 2.2 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD DUF2530 PF10745.9 gi|55377622|ref|YP_135472.1| - 7 7.0 11.6 0.45 10.8 1.5 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) RIO1 PF01163.22 gi|55377623|ref|YP_135473.1| - 3.5e-09 36.5 0.0 5.4e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|55377623|ref|YP_135473.1| - 5.2e-05 22.7 0.0 7.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|55377623|ref|YP_135473.1| - 0.00015 21.8 0.5 0.062 13.2 0.1 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|55377623|ref|YP_135473.1| - 0.0065 16.1 0.0 0.009 15.6 0.0 1.1 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase PF00069.25 gi|55377623|ref|YP_135473.1| - 0.062 12.6 0.0 0.082 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein kinase domain Kinase-PolyVal PF18762.1 gi|55377623|ref|YP_135473.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Acyl-CoA_dh_N PF02771.16 gi|55377624|ref|YP_135474.1| - 4.3e-37 127.2 0.0 6.9e-37 126.6 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55377624|ref|YP_135474.1| - 1.8e-24 85.7 0.0 2.9e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|55377624|ref|YP_135474.1| - 6.5e-12 45.9 0.0 1e-11 45.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55377624|ref|YP_135474.1| - 0.072 13.4 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|55377625|ref|YP_135475.1| - 2.1e-27 96.2 0.2 2.3e-27 96.1 0.2 1.0 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55377625|ref|YP_135475.1| - 1.6e-09 38.1 0.1 1.7e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Usp PF00582.26 gi|55377626|ref|YP_135476.1| - 1.5e-13 51.5 4.6 1.7e-13 51.2 4.6 1.1 1 0 0 1 1 1 1 Universal stress protein family CAP59_mtransfer PF11735.8 gi|55377626|ref|YP_135476.1| - 0.021 14.5 0.0 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 RtcB PF01139.17 gi|55377627|ref|YP_135477.1| - 2.3e-58 198.3 0.0 2.1e-29 103.0 0.0 2.2 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB DoxX PF07681.12 gi|55377628|ref|YP_135478.1| - 6.6e-08 33.0 8.4 6.6e-08 33.0 8.4 1.8 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|55377628|ref|YP_135478.1| - 6.8e-05 22.8 8.9 0.00054 19.9 8.9 2.0 1 1 0 1 1 1 1 TQO small subunit DoxD VKG_Carbox PF05090.14 gi|55377628|ref|YP_135478.1| - 0.14 11.0 5.1 0.14 11.0 0.4 2.0 1 1 1 2 2 2 0 Vitamin K-dependent gamma-carboxylase Phage_holin_3_6 PF07332.11 gi|55377628|ref|YP_135478.1| - 5.6 7.0 10.4 5.7 7.0 4.6 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III YdjM PF04307.14 gi|55377630|ref|YP_135480.1| - 1.4e-07 30.9 1.3 2.1e-07 30.4 1.3 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase CDP-OH_P_transf PF01066.21 gi|55377631|ref|YP_135481.1| - 2.1e-08 34.8 2.9 2.1e-08 34.8 2.9 3.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HisKA_7TM PF16927.5 gi|55377632|ref|YP_135482.1| - 8.5e-53 179.6 19.2 1.2e-52 179.1 19.2 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|55377632|ref|YP_135482.1| - 1.7e-12 47.5 0.3 3.7e-11 43.3 0.3 2.7 1 1 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|55377632|ref|YP_135482.1| - 1.6e-10 41.4 0.0 3.5e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|55377632|ref|YP_135482.1| - 6.6e-07 29.0 0.8 2.1e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS PF00989.25 gi|55377632|ref|YP_135482.1| - 6.1e-06 26.2 0.0 2.7e-05 24.1 0.0 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|55377632|ref|YP_135482.1| - 1.1e-05 25.4 0.1 2.1e-05 24.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|55377632|ref|YP_135482.1| - 0.00031 20.7 0.8 0.00064 19.7 0.4 1.7 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|55377632|ref|YP_135482.1| - 0.00035 20.5 0.0 0.0011 18.9 0.0 1.8 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.6 gi|55377632|ref|YP_135482.1| - 0.0011 18.6 0.7 0.0026 17.4 0.7 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|55377632|ref|YP_135482.1| - 0.0027 17.8 0.1 0.09 12.9 0.1 2.7 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55377632|ref|YP_135482.1| - 0.012 15.8 0.0 0.081 13.2 0.0 2.4 1 1 0 1 1 1 0 PAS domain PAS_10 PF13596.6 gi|55377632|ref|YP_135482.1| - 0.019 15.6 0.0 0.066 13.8 0.0 2.0 1 1 0 1 1 1 0 PAS domain Abhydrolase_6 PF12697.7 gi|55377633|ref|YP_135483.1| - 7.3e-16 59.4 12.3 8.4e-16 59.2 12.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|55377633|ref|YP_135483.1| - 3.1e-11 43.0 0.5 6.5e-11 42.0 0.5 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|55377633|ref|YP_135483.1| - 1.9e-10 40.8 0.3 7.2e-05 22.5 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|55377633|ref|YP_135483.1| - 0.0006 19.9 0.0 0.0013 18.8 0.0 1.6 1 1 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|55377633|ref|YP_135483.1| - 0.058 13.2 0.0 0.87 9.3 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|55377633|ref|YP_135483.1| - 0.12 12.0 0.0 0.79 9.3 0.0 2.0 2 1 0 2 2 2 0 Serine hydrolase (FSH1) AAA PF00004.29 gi|55377635|ref|YP_135485.1| - 1.1e-99 330.0 0.0 4.6e-49 166.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55377635|ref|YP_135485.1| - 1.5e-26 92.0 4.8 6.7e-15 54.6 0.8 3.1 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|55377635|ref|YP_135485.1| - 7.6e-25 86.9 0.0 5.6e-24 84.1 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|55377635|ref|YP_135485.1| - 1e-17 64.8 0.1 1.3e-08 35.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|55377635|ref|YP_135485.1| - 5.5e-16 58.7 0.0 1.7e-07 31.1 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|55377635|ref|YP_135485.1| - 4.2e-15 55.3 0.3 1.1e-14 54.0 0.3 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|55377635|ref|YP_135485.1| - 4.1e-13 50.1 0.1 4.3e-06 27.2 0.0 3.5 2 2 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|55377635|ref|YP_135485.1| - 6.2e-11 42.7 0.2 0.0098 16.2 0.0 3.7 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|55377635|ref|YP_135485.1| - 8.4e-11 42.0 1.0 0.0002 21.4 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|55377635|ref|YP_135485.1| - 9.5e-11 42.0 0.0 0.00019 21.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|55377635|ref|YP_135485.1| - 7.2e-10 38.6 0.0 0.00022 20.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|55377635|ref|YP_135485.1| - 1e-09 38.5 0.0 0.0017 18.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|55377635|ref|YP_135485.1| - 3.3e-08 33.5 0.0 0.0023 17.7 0.0 2.7 3 0 0 3 3 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|55377635|ref|YP_135485.1| - 1.6e-07 31.7 0.0 0.023 15.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|55377635|ref|YP_135485.1| - 3.8e-07 29.8 0.0 0.038 13.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|55377635|ref|YP_135485.1| - 5e-07 29.3 0.4 0.014 14.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|55377635|ref|YP_135485.1| - 8.5e-07 28.4 0.0 0.0025 17.0 0.0 3.0 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|55377635|ref|YP_135485.1| - 1.1e-06 29.2 0.0 0.078 13.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|55377635|ref|YP_135485.1| - 3.8e-06 26.4 0.1 0.26 10.6 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.11 gi|55377635|ref|YP_135485.1| - 4.9e-06 26.4 0.0 0.039 13.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|55377635|ref|YP_135485.1| - 5.7e-06 26.7 0.0 0.1 12.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|55377635|ref|YP_135485.1| - 1.2e-05 25.1 0.0 0.17 11.5 0.0 3.1 4 0 0 4 4 3 2 Sigma-54 interaction domain TsaE PF02367.17 gi|55377635|ref|YP_135485.1| - 1.2e-05 25.3 0.0 0.21 11.6 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|55377635|ref|YP_135485.1| - 1.6e-05 24.4 0.1 0.056 12.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_11 PF13086.6 gi|55377635|ref|YP_135485.1| - 1.9e-05 24.6 0.0 0.15 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|55377635|ref|YP_135485.1| - 2e-05 24.6 0.1 0.87 9.5 0.0 3.6 3 0 0 3 3 3 2 NACHT domain AAA_25 PF13481.6 gi|55377635|ref|YP_135485.1| - 2.8e-05 23.8 0.9 3.7 7.1 0.4 4.1 3 1 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|55377635|ref|YP_135485.1| - 3.2e-05 24.5 0.1 0.16 12.4 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.6 gi|55377635|ref|YP_135485.1| - 5e-05 23.1 0.0 0.21 11.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|55377635|ref|YP_135485.1| - 5.4e-05 23.0 0.1 0.19 11.4 0.0 2.7 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.9 gi|55377635|ref|YP_135485.1| - 8.5e-05 22.0 0.0 0.35 10.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|55377635|ref|YP_135485.1| - 0.0001 21.7 0.1 0.28 10.4 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Parvo_NS1 PF01057.17 gi|55377635|ref|YP_135485.1| - 0.00022 20.4 0.1 0.63 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.22 gi|55377635|ref|YP_135485.1| - 0.00025 20.3 0.0 0.85 8.8 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.18 gi|55377635|ref|YP_135485.1| - 0.00036 20.5 0.0 0.22 11.4 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein Vps4_C PF09336.10 gi|55377635|ref|YP_135485.1| - 0.00046 20.1 0.1 0.065 13.2 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|55377635|ref|YP_135485.1| - 0.00063 20.2 0.0 2.8 8.4 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|55377635|ref|YP_135485.1| - 0.0011 19.3 0.7 2.6 8.4 0.0 2.8 2 1 1 3 3 2 2 AAA domain NTPase_1 PF03266.15 gi|55377635|ref|YP_135485.1| - 0.0012 18.8 1.5 1.3 8.9 0.0 3.6 3 1 1 4 4 3 1 NTPase ATPase_2 PF01637.18 gi|55377635|ref|YP_135485.1| - 0.0021 18.0 0.0 0.78 9.6 0.0 2.9 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|55377635|ref|YP_135485.1| - 0.0048 16.0 0.0 2.4 7.1 0.0 3.1 3 0 0 3 3 3 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|55377635|ref|YP_135485.1| - 0.0052 16.9 0.0 5 7.2 0.0 2.9 3 0 0 3 3 2 0 Sigma-54 interaction domain ResIII PF04851.15 gi|55377635|ref|YP_135485.1| - 0.011 15.8 0.0 4.1 7.4 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|55377635|ref|YP_135485.1| - 0.025 13.5 0.0 4.4 6.1 0.0 2.7 3 0 0 3 3 2 0 AFG1-like ATPase Zot PF05707.12 gi|55377635|ref|YP_135485.1| - 0.032 13.9 0.0 1.6 8.4 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Rad17 PF03215.15 gi|55377635|ref|YP_135485.1| - 0.033 14.1 0.0 6.8 6.6 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain Cytidylate_kin PF02224.18 gi|55377635|ref|YP_135485.1| - 0.044 13.5 0.2 14 5.4 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase Guanylate_kin PF00625.21 gi|55377635|ref|YP_135485.1| - 0.064 12.9 0.1 32 4.2 0.0 3.6 2 1 1 3 3 3 0 Guanylate kinase ATP-synt_ab PF00006.25 gi|55377635|ref|YP_135485.1| - 0.1 12.2 0.0 2.2 7.9 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Torsin PF06309.11 gi|55377635|ref|YP_135485.1| - 0.11 12.6 0.0 5.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.14 gi|55377635|ref|YP_135485.1| - 0.11 11.6 0.0 3.2 6.8 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Viral_helicase1 PF01443.18 gi|55377635|ref|YP_135485.1| - 0.12 12.1 0.0 13 5.4 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|55377635|ref|YP_135485.1| - 0.16 11.7 0.0 28 4.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain TniB PF05621.11 gi|55377635|ref|YP_135485.1| - 0.17 11.2 0.0 28 4.0 0.0 3.0 2 1 1 3 3 3 0 Bacterial TniB protein COOH-NH2_lig PF14395.6 gi|55377635|ref|YP_135485.1| - 0.18 11.0 0.7 8.4 5.5 0.0 2.6 3 0 0 3 3 3 0 Phage phiEco32-like COOH.NH2 ligase-type 2 Regulator_TrmB PF11495.8 gi|55377636|ref|YP_135486.1| - 1.3e-62 211.1 0.0 1.4e-62 210.9 0.0 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HisKA PF00512.25 gi|55377637|ref|YP_135487.1| - 1.1e-11 44.6 3.5 2.2e-11 43.6 2.0 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|55377637|ref|YP_135487.1| - 8.7e-10 39.0 0.4 4.1e-09 36.8 0.0 2.3 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|55377637|ref|YP_135487.1| - 9.8e-06 25.9 0.1 2.7e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|55377637|ref|YP_135487.1| - 0.00011 22.3 0.0 0.00027 21.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|55377637|ref|YP_135487.1| - 0.00045 20.9 0.1 0.0011 19.6 0.1 1.7 1 0 0 1 1 1 1 GAF domain baeRF_family8 PF18851.1 gi|55377637|ref|YP_135487.1| - 0.017 15.2 1.0 0.069 13.2 0.2 2.3 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 8 DUF420 PF04238.12 gi|55377638|ref|YP_135488.1| - 1.9e-35 122.0 7.7 2.9e-35 121.4 7.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|55377638|ref|YP_135488.1| - 4e-05 23.8 7.5 4.3e-05 23.7 3.1 2.3 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) Romo1 PF10247.9 gi|55377638|ref|YP_135488.1| - 0.09 13.2 1.3 0.25 11.7 0.5 2.0 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Acetyltransf_3 PF13302.7 gi|55377639|ref|YP_135489.1| - 5.4e-24 85.4 0.0 6.4e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55377639|ref|YP_135489.1| - 2.2e-09 37.5 0.0 2.9e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|55377639|ref|YP_135489.1| - 1e-07 32.2 0.0 3.7e-07 30.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|55377639|ref|YP_135489.1| - 0.00018 21.2 0.0 0.00026 20.7 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_8 PF13523.6 gi|55377639|ref|YP_135489.1| - 0.00034 20.3 0.2 0.00055 19.6 0.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377639|ref|YP_135489.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.4 1 1 0 1 1 1 0 FR47-like protein GATase_7 PF13537.6 gi|55377640|ref|YP_135490.1| - 2.8e-18 66.0 0.0 6.6e-18 64.8 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|55377640|ref|YP_135490.1| - 7.9e-18 64.9 0.0 1.6e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|55377640|ref|YP_135490.1| - 1.3e-06 28.0 0.1 3e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|55377640|ref|YP_135490.1| - 0.00058 18.8 0.0 0.0013 17.7 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II LSM PF01423.22 gi|55377641|ref|YP_135491.1| - 1e-14 53.9 0.7 1.8e-12 46.8 0.7 2.0 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|55377641|ref|YP_135491.1| - 0.0001 22.3 0.2 0.0012 19.0 0.1 1.9 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|55377641|ref|YP_135491.1| - 0.001 19.2 0.1 0.0012 18.9 0.1 1.1 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DUF2642 PF10842.8 gi|55377641|ref|YP_135491.1| - 0.0049 16.7 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2642) Hfq PF17209.3 gi|55377641|ref|YP_135491.1| - 0.01 15.4 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 0 Hfq protein Peptidase_M42 PF05343.14 gi|55377642|ref|YP_135492.1| - 8.6e-78 261.3 2.4 9.9e-78 261.1 2.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|55377642|ref|YP_135492.1| - 1.7e-09 37.7 0.4 2.7e-09 37.0 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|55377642|ref|YP_135492.1| - 2.5e-06 26.6 0.0 0.003 16.4 0.0 2.3 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) IHHNV_capsid PF16530.5 gi|55377643|ref|YP_135493.1| - 0.0093 15.1 0.0 0.012 14.8 0.0 1.0 1 0 0 1 1 1 1 Infectious hypodermal and haematopoietic necrosis virus, capsid DUF5305 PF17231.2 gi|55377643|ref|YP_135493.1| - 0.21 11.0 0.0 0.25 10.7 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5305) Zincin_2 PF10103.9 gi|55377644|ref|YP_135494.1| - 3.1e-64 217.3 5.7 3.1e-34 118.8 1.1 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase HrcA_DNA-bdg PF03444.15 gi|55377645|ref|YP_135495.1| - 1.8e-31 107.6 0.0 2.6e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 gi|55377645|ref|YP_135495.1| - 5.5e-08 32.6 0.0 8.5e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|55377645|ref|YP_135495.1| - 1.6e-07 31.5 0.0 3.5e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|55377645|ref|YP_135495.1| - 0.00053 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|55377645|ref|YP_135495.1| - 0.0019 18.2 0.0 0.0031 17.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|55377645|ref|YP_135495.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_IclR PF09339.10 gi|55377645|ref|YP_135495.1| - 0.072 12.9 0.3 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55377645|ref|YP_135495.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_15 PF12324.8 gi|55377645|ref|YP_135495.1| - 0.11 12.4 0.1 0.9 9.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase MarR_2 PF12802.7 gi|55377645|ref|YP_135495.1| - 0.13 12.2 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 MarR family Phosphodiest PF01663.22 gi|55377646|ref|YP_135496.1| - 2.1e-37 129.6 0.0 3.2e-36 125.7 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase zf-C2H2_jaz PF12171.8 gi|55377648|ref|YP_135498.1| - 0.0053 17.0 0.3 0.0072 16.6 0.3 1.2 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 gi|55377648|ref|YP_135498.1| - 0.011 16.1 0.1 0.014 15.8 0.1 1.2 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-C2H2 PF00096.26 gi|55377648|ref|YP_135498.1| - 0.012 16.0 0.1 0.018 15.5 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type RPA_interact_C PF14768.6 gi|55377648|ref|YP_135498.1| - 0.047 14.3 0.9 1.3 9.6 0.1 2.0 2 0 0 2 2 2 0 Replication protein A interacting C-terminal AAA PF00004.29 gi|55377649|ref|YP_135499.1| - 5.6e-94 311.6 0.0 6.1e-46 156.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55377649|ref|YP_135499.1| - 6.9e-30 102.6 6.0 1.4e-14 53.6 0.4 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|55377649|ref|YP_135499.1| - 7.2e-21 74.2 0.3 4.9e-20 71.5 0.2 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|55377649|ref|YP_135499.1| - 7e-16 58.4 0.0 6.2e-07 29.3 0.0 3.3 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|55377649|ref|YP_135499.1| - 2.4e-15 57.3 2.9 3.1e-07 31.0 0.1 4.1 2 2 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|55377649|ref|YP_135499.1| - 1.7e-12 47.8 0.0 5e-06 26.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|55377649|ref|YP_135499.1| - 5e-12 46.3 1.3 0.011 16.0 0.0 4.4 2 2 1 3 3 3 3 AAA domain AAA_33 PF13671.6 gi|55377649|ref|YP_135499.1| - 7.3e-12 45.6 0.0 0.00015 21.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|55377649|ref|YP_135499.1| - 3.4e-10 40.1 1.3 0.0013 18.7 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|55377649|ref|YP_135499.1| - 2.4e-09 36.9 0.0 0.0012 18.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|55377649|ref|YP_135499.1| - 3e-08 34.3 0.0 0.015 15.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|55377649|ref|YP_135499.1| - 2.1e-07 31.1 0.0 0.013 15.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|55377649|ref|YP_135499.1| - 2.9e-07 30.9 0.0 0.013 15.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|55377649|ref|YP_135499.1| - 5.7e-07 29.4 0.0 0.028 14.1 0.0 2.6 2 1 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|55377649|ref|YP_135499.1| - 1.7e-06 28.3 0.0 0.1 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|55377649|ref|YP_135499.1| - 1.9e-06 27.4 0.2 0.057 12.8 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|55377649|ref|YP_135499.1| - 2.9e-06 27.1 0.0 0.29 10.8 0.0 3.7 3 1 0 3 3 3 2 Sigma-54 interaction domain DUF815 PF05673.13 gi|55377649|ref|YP_135499.1| - 3.5e-06 26.4 0.0 0.001 18.3 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) TsaE PF02367.17 gi|55377649|ref|YP_135499.1| - 7.1e-06 26.0 0.0 0.16 12.0 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|55377649|ref|YP_135499.1| - 3e-05 24.5 0.0 0.55 10.8 0.0 3.0 2 1 1 3 3 3 2 ABC transporter AAA_24 PF13479.6 gi|55377649|ref|YP_135499.1| - 3.5e-05 23.6 0.0 0.14 11.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|55377649|ref|YP_135499.1| - 3.7e-05 23.6 0.0 0.085 12.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|55377649|ref|YP_135499.1| - 4.2e-05 23.4 0.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|55377649|ref|YP_135499.1| - 4.5e-05 23.4 0.6 3.2 7.6 0.0 3.7 4 0 0 4 4 3 2 NACHT domain AAA_25 PF13481.6 gi|55377649|ref|YP_135499.1| - 6.6e-05 22.6 9.8 0.29 10.7 1.1 4.5 2 2 2 4 4 4 2 AAA domain ATPase PF06745.13 gi|55377649|ref|YP_135499.1| - 9.5e-05 21.8 0.5 1.4 8.2 0.0 3.8 2 2 1 4 4 4 2 KaiC Zeta_toxin PF06414.12 gi|55377649|ref|YP_135499.1| - 0.00014 21.2 0.0 0.27 10.5 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|55377649|ref|YP_135499.1| - 0.00014 21.4 0.0 0.31 10.5 0.0 2.7 3 0 0 3 3 3 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|55377649|ref|YP_135499.1| - 0.00016 20.9 0.0 0.34 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|55377649|ref|YP_135499.1| - 0.00016 21.2 0.1 0.86 9.0 0.0 3.0 3 0 0 3 3 2 2 PhoH-like protein AAA_19 PF13245.6 gi|55377649|ref|YP_135499.1| - 0.00025 21.4 0.0 0.45 10.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain CDC48_2 PF02933.17 gi|55377649|ref|YP_135499.1| - 0.00038 20.2 0.1 0.00038 20.2 0.1 2.7 2 1 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 DUF2075 PF09848.9 gi|55377649|ref|YP_135499.1| - 0.00043 19.6 0.0 0.31 10.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|55377649|ref|YP_135499.1| - 0.00053 19.2 0.0 0.27 10.4 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|55377649|ref|YP_135499.1| - 0.00088 19.4 0.0 0.39 10.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain CPT PF07931.12 gi|55377649|ref|YP_135499.1| - 0.0015 18.4 0.1 1 9.2 0.0 3.0 3 0 0 3 3 2 1 Chloramphenicol phosphotransferase-like protein AAA_17 PF13207.6 gi|55377649|ref|YP_135499.1| - 0.0019 18.6 0.0 2.4 8.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|55377649|ref|YP_135499.1| - 0.002 17.9 5.0 0.64 9.7 0.9 3.7 3 1 0 3 3 3 1 AAA domain TniB PF05621.11 gi|55377649|ref|YP_135499.1| - 0.0053 16.2 0.0 20 4.5 0.0 3.8 3 1 1 4 4 4 0 Bacterial TniB protein ATPase_2 PF01637.18 gi|55377649|ref|YP_135499.1| - 0.0058 16.6 0.0 0.9 9.4 0.0 3.0 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea DUF1905 PF08922.11 gi|55377649|ref|YP_135499.1| - 0.042 13.9 0.1 0.097 12.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) NTPase_1 PF03266.15 gi|55377649|ref|YP_135499.1| - 0.054 13.4 0.4 16 5.4 0.0 3.3 2 2 2 4 4 3 0 NTPase Cytidylate_kin PF02224.18 gi|55377649|ref|YP_135499.1| - 0.1 12.3 3.2 5.3 6.7 0.0 3.4 4 0 0 4 4 3 0 Cytidylate kinase Torsin PF06309.11 gi|55377649|ref|YP_135499.1| - 0.11 12.6 0.0 2.8 8.1 0.0 2.4 2 0 0 2 2 2 0 Torsin AFG1_ATPase PF03969.16 gi|55377649|ref|YP_135499.1| - 0.12 11.3 0.0 7 5.4 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.18 gi|55377649|ref|YP_135499.1| - 0.17 11.6 0.0 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.12 gi|55377649|ref|YP_135499.1| - 0.18 11.5 0.2 23 4.6 0.0 3.3 2 2 2 4 4 4 0 Zonular occludens toxin (Zot) Bac_DnaA PF00308.18 gi|55377649|ref|YP_135499.1| - 0.2 11.5 0.0 27 4.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial dnaA protein DUF4349 PF14257.6 gi|55377650|ref|YP_135500.1| - 1.9e-62 210.5 5.9 2.4e-62 210.2 5.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DivIC PF04977.15 gi|55377650|ref|YP_135500.1| - 0.0016 18.1 8.5 2.4 8.0 0.3 3.2 2 1 1 3 3 3 3 Septum formation initiator ABC_tran_CTD PF16326.5 gi|55377650|ref|YP_135500.1| - 0.024 14.9 2.5 0.19 12.0 0.5 2.3 2 0 0 2 2 2 0 ABC transporter C-terminal domain Spc7 PF08317.11 gi|55377650|ref|YP_135500.1| - 0.027 13.4 3.8 0.037 12.9 3.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|55377650|ref|YP_135500.1| - 0.031 14.3 5.8 0.054 13.5 5.8 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lge1 PF11488.8 gi|55377650|ref|YP_135500.1| - 0.051 13.8 0.8 0.1 12.8 0.8 1.5 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 Dynactin_p22 PF07426.11 gi|55377650|ref|YP_135500.1| - 0.094 12.6 1.4 0.35 10.7 1.4 1.8 1 1 1 2 2 2 0 Dynactin subunit p22 TssO PF17561.2 gi|55377650|ref|YP_135500.1| - 0.12 12.5 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssO TMF_TATA_bd PF12325.8 gi|55377650|ref|YP_135500.1| - 0.16 12.2 8.4 0.46 10.7 3.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc24 PF08286.11 gi|55377650|ref|YP_135500.1| - 0.18 12.1 4.3 0.98 9.7 1.1 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 PIEZO PF15917.5 gi|55377650|ref|YP_135500.1| - 0.2 11.1 0.3 0.28 10.6 0.3 1.2 1 0 0 1 1 1 0 Piezo CLZ PF16526.5 gi|55377650|ref|YP_135500.1| - 0.91 9.9 6.6 1.5 9.2 0.6 2.3 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels APG6_N PF17675.1 gi|55377650|ref|YP_135500.1| - 1 9.9 6.9 2 8.9 6.8 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region XhlA PF10779.9 gi|55377650|ref|YP_135500.1| - 1.1 9.5 4.8 13 6.1 3.3 2.3 1 1 1 2 2 2 0 Haemolysin XhlA ADIP PF11559.8 gi|55377650|ref|YP_135500.1| - 1.4 9.0 7.7 0.71 10.0 2.9 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4140 PF13600.6 gi|55377650|ref|YP_135500.1| - 1.6 9.2 9.4 1.5e+02 2.9 9.4 2.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Phageshock_PspG PF09583.10 gi|55377650|ref|YP_135500.1| - 2.3 8.6 8.8 0.2 11.9 2.4 2.0 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) Osmo_CC PF08946.10 gi|55377650|ref|YP_135500.1| - 5.1 7.4 6.4 19 5.6 2.0 2.3 2 0 0 2 2 2 0 Osmosensory transporter coiled coil CN_hydrolase PF00795.22 gi|55377651|ref|YP_135501.1| - 1.7e-48 165.2 0.0 1.9e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.9 gi|55377652|ref|YP_135502.1| - 1.5e-13 51.3 1.4 1.7e-13 51.1 1.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|55377652|ref|YP_135502.1| - 3.4e-06 27.3 0.2 4e-06 27.0 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|55377652|ref|YP_135502.1| - 1.5e-05 24.8 0.0 1.9e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) AHSA1 PF08327.11 gi|55377652|ref|YP_135502.1| - 0.0059 16.8 1.5 0.068 13.4 1.5 2.1 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein HTH_AsnC-type PF13404.6 gi|55377653|ref|YP_135503.1| - 0.00031 20.5 0.6 0.0032 17.2 0.6 2.1 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|55377653|ref|YP_135503.1| - 0.0015 18.1 0.6 0.012 15.2 0.6 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|55377653|ref|YP_135503.1| - 0.0064 16.8 0.0 0.008 16.5 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.7 gi|55377653|ref|YP_135503.1| - 0.0066 16.5 0.1 0.0079 16.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|55377653|ref|YP_135503.1| - 0.0079 16.2 0.1 0.016 15.2 0.0 1.5 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus LexA_DNA_bind PF01726.16 gi|55377653|ref|YP_135503.1| - 0.029 14.1 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.7 gi|55377653|ref|YP_135503.1| - 0.042 13.7 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|55377653|ref|YP_135503.1| - 0.058 13.4 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TPPK_C PF12555.8 gi|55377654|ref|YP_135504.1| - 0.31 11.1 7.5 1.9 8.6 3.3 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal LEA_2 PF03168.13 gi|55377655|ref|YP_135505.1| - 5.4e-17 62.2 0.5 1.3e-09 38.5 0.1 2.3 2 0 0 2 2 2 2 Late embryogenesis abundant protein DUF4307 PF14155.6 gi|55377655|ref|YP_135505.1| - 0.018 14.8 1.2 0.049 13.5 1.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Y1_Tnp PF01797.16 gi|55377656|ref|YP_135506.1| - 2.6e-37 127.6 0.2 3e-37 127.4 0.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like AP_endonuc_2 PF01261.24 gi|55377656|ref|YP_135506.1| - 0.028 13.8 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel OrfB_Zn_ribbon PF07282.11 gi|55377657|ref|YP_135507.1| - 6.7e-19 67.6 0.4 1.1e-18 66.9 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|55377657|ref|YP_135507.1| - 0.025 14.5 4.7 0.044 13.8 4.7 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|55377657|ref|YP_135507.1| - 0.14 12.3 1.6 0.32 11.1 1.6 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TALPID3 PF15324.6 gi|55377658|ref|YP_135508.1| - 0.025 12.3 4.2 0.028 12.1 4.2 1.1 1 0 0 1 1 1 0 Hedgehog signalling target HalOD1 PF18545.1 gi|55377659|ref|YP_135509.1| - 1.7e-12 47.4 0.0 1.9e-12 47.2 0.0 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 PhoU PF01895.19 gi|55377660|ref|YP_135510.1| - 1.7e-16 60.4 6.9 1.9e-13 50.7 0.1 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|55377660|ref|YP_135510.1| - 3.2e-06 26.9 0.0 6e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|55377661|ref|YP_135511.1| - 5.1e-55 186.7 0.0 8e-55 186.1 0.0 1.3 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|55377661|ref|YP_135511.1| - 1.5e-06 27.8 2.3 2.2e-06 27.3 0.7 2.1 2 1 0 2 2 2 1 Diacylglycerol kinase catalytic domain MoCF_biosynth PF00994.24 gi|55377662|ref|YP_135512.1| - 4.1e-35 120.5 0.2 6e-35 120.0 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain AAA_lid_2 PF17863.1 gi|55377662|ref|YP_135512.1| - 0.085 12.7 0.3 7.6 6.5 0.0 2.5 2 0 0 2 2 2 0 AAA lid domain HTH_IclR PF09339.10 gi|55377663|ref|YP_135513.1| - 0.0055 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4897 PF16238.5 gi|55377663|ref|YP_135513.1| - 0.046 13.6 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) HTH_24 PF13412.6 gi|55377663|ref|YP_135513.1| - 0.17 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BPD_transp_2 PF02653.16 gi|55377664|ref|YP_135514.1| - 1.3e-39 136.0 41.9 1.3e-39 136.0 41.9 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|55377665|ref|YP_135515.1| - 1e-45 156.0 33.6 1e-45 156.0 33.6 2.2 2 1 1 3 3 3 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|55377666|ref|YP_135516.1| - 2.8e-29 102.4 0.0 3.7e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377666|ref|YP_135516.1| - 2.9e-10 40.4 2.9 0.00011 22.1 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|55377666|ref|YP_135516.1| - 2.7e-07 30.4 0.0 5.8e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|55377666|ref|YP_135516.1| - 8.2e-05 22.1 0.5 0.34 10.3 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|55377666|ref|YP_135516.1| - 0.00024 21.7 1.0 0.00038 21.0 1.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55377666|ref|YP_135516.1| - 0.0027 17.4 0.2 0.005 16.6 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|55377666|ref|YP_135516.1| - 0.013 15.3 0.2 0.02 14.6 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|55377666|ref|YP_135516.1| - 0.062 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|55377666|ref|YP_135516.1| - 0.12 12.4 0.2 0.38 10.9 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|55377666|ref|YP_135516.1| - 0.13 12.1 0.3 0.41 10.5 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|55377666|ref|YP_135516.1| - 0.15 11.6 0.4 9.9 5.7 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|55377666|ref|YP_135516.1| - 0.23 11.8 0.9 5.1 7.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|55377667|ref|YP_135517.1| - 1.2e-29 103.6 0.0 2.1e-29 102.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|55377667|ref|YP_135517.1| - 3.9e-11 43.3 0.2 0.00017 21.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377667|ref|YP_135517.1| - 0.0001 21.8 1.5 0.0023 17.4 1.5 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|55377667|ref|YP_135517.1| - 0.00066 20.1 0.0 0.001 19.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|55377667|ref|YP_135517.1| - 0.0013 18.5 0.0 0.029 14.1 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|55377667|ref|YP_135517.1| - 0.0014 18.4 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|55377667|ref|YP_135517.1| - 0.0016 19.0 0.0 0.0025 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|55377667|ref|YP_135517.1| - 0.0025 17.4 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55377667|ref|YP_135517.1| - 0.0033 17.2 0.0 0.0075 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|55377667|ref|YP_135517.1| - 0.0043 17.5 0.1 0.034 14.6 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|55377667|ref|YP_135517.1| - 0.0095 16.2 0.4 0.06 13.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|55377667|ref|YP_135517.1| - 0.04 14.1 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|55377667|ref|YP_135517.1| - 0.047 13.6 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|55377667|ref|YP_135517.1| - 0.087 12.9 0.0 0.17 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|55377667|ref|YP_135517.1| - 0.093 12.0 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.7 gi|55377667|ref|YP_135517.1| - 0.096 11.6 0.0 0.21 10.5 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.6 gi|55377667|ref|YP_135517.1| - 0.17 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|55377667|ref|YP_135517.1| - 0.17 12.0 0.0 0.54 10.4 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|55377667|ref|YP_135517.1| - 0.19 11.2 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|55377667|ref|YP_135517.1| - 0.21 12.2 0.9 1.1 9.8 0.3 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|55377667|ref|YP_135517.1| - 0.22 10.7 0.1 0.32 10.1 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain MutS_V PF00488.21 gi|55377667|ref|YP_135517.1| - 0.22 11.5 0.0 0.34 10.9 0.0 1.3 1 0 0 1 1 1 0 MutS domain V SbcCD_C PF13558.6 gi|55377667|ref|YP_135517.1| - 0.42 10.9 2.4 7.9 6.8 2.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Peripla_BP_6 PF13458.6 gi|55377668|ref|YP_135518.1| - 3.2e-27 96.1 13.0 4.1e-22 79.3 2.9 2.2 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|55377668|ref|YP_135518.1| - 3.1e-18 66.0 0.3 2.8e-13 49.7 0.1 2.2 2 0 0 2 2 2 2 Receptor family ligand binding region LppC PF04348.13 gi|55377668|ref|YP_135518.1| - 0.057 12.2 0.2 2.2 7.0 0.0 2.1 2 0 0 2 2 2 0 LppC putative lipoprotein TAT_signal PF10518.9 gi|55377668|ref|YP_135518.1| - 0.092 12.6 1.8 0.31 11.0 1.8 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Sod_Fe_N PF00081.22 gi|55377669|ref|YP_135519.1| - 1.1e-28 99.5 0.6 2.1e-28 98.6 0.6 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|55377669|ref|YP_135519.1| - 3.1e-28 97.9 0.0 4.7e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain FAD_binding_7 PF03441.14 gi|55377670|ref|YP_135520.1| - 3.5e-79 265.0 2.0 4.9e-79 264.5 2.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|55377670|ref|YP_135520.1| - 1.6e-44 151.8 0.0 3.6e-44 150.7 0.0 1.6 1 0 0 1 1 1 1 DNA photolyase Amidohydro_2 PF04909.14 gi|55377670|ref|YP_135520.1| - 0.00034 20.5 0.2 0.00077 19.3 0.2 1.5 1 0 0 1 1 1 1 Amidohydrolase ECH_1 PF00378.20 gi|55377671|ref|YP_135521.1| - 2.4e-56 190.8 0.0 2.8e-56 190.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|55377671|ref|YP_135521.1| - 3.2e-34 118.9 0.1 3.1e-32 112.4 0.0 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase HTH_Tnp_Tc3_2 PF01498.18 gi|55377672|ref|YP_135522.1| - 0.0027 17.9 0.0 0.0046 17.2 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.6 gi|55377672|ref|YP_135522.1| - 0.012 15.4 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|55377672|ref|YP_135522.1| - 0.019 14.5 0.1 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PqqD PF05402.12 gi|55377672|ref|YP_135522.1| - 0.12 12.7 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_32 PF13565.6 gi|55377672|ref|YP_135522.1| - 0.13 12.9 0.1 0.29 11.8 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain UPF0058 PF01893.16 gi|55377673|ref|YP_135523.1| - 3.4e-34 117.0 0.5 3.8e-34 116.8 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 RHH_1 PF01402.21 gi|55377674|ref|YP_135524.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|55377674|ref|YP_135524.1| - 0.19 11.6 0.0 0.23 11.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator Chorismate_bind PF00425.18 gi|55377675|ref|YP_135525.1| - 2.1e-79 266.7 0.0 2.7e-79 266.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme DUF615 PF04751.14 gi|55377675|ref|YP_135525.1| - 0.041 13.9 0.0 0.097 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF615) GETHR PF05671.11 gi|55377675|ref|YP_135525.1| - 1.8 8.0 7.8 0.54 9.7 0.8 2.8 2 0 0 2 2 2 0 GETHR pentapeptide repeat (5 copies) TPP_enzyme_N PF02776.18 gi|55377676|ref|YP_135526.1| - 1.8e-34 118.9 0.0 5.5e-34 117.2 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|55377676|ref|YP_135526.1| - 6.2e-11 42.4 0.0 9.1e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|55377676|ref|YP_135526.1| - 7.1e-07 29.1 0.0 1.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|55377676|ref|YP_135526.1| - 0.014 15.1 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain DnaJ PF00226.31 gi|55377677|ref|YP_135527.1| - 1.4e-14 53.9 0.0 2.3e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain NPR3 PF03666.13 gi|55377677|ref|YP_135527.1| - 0.87 8.3 1.8 1.1 8.0 1.8 1.1 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Macoilin PF09726.9 gi|55377677|ref|YP_135527.1| - 2.3 6.7 4.3 2.5 6.5 4.3 1.1 1 0 0 1 1 1 0 Macoilin family MWFE PF15879.5 gi|55377677|ref|YP_135527.1| - 6.1 7.1 5.7 19 5.5 5.0 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase MWFE subunit DUF3147 PF11345.8 gi|55377679|ref|YP_135528.1| - 0.0006 20.2 3.0 0.00079 19.8 3.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3147) Wzy_C PF04932.15 gi|55377679|ref|YP_135528.1| - 0.00066 19.4 0.0 0.00067 19.3 0.0 1.1 1 0 0 1 1 1 1 O-Antigen ligase S_4TM PF18159.1 gi|55377679|ref|YP_135528.1| - 0.014 14.7 0.1 0.015 14.6 0.1 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain DUF3742 PF12553.8 gi|55377679|ref|YP_135528.1| - 0.021 14.9 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) ECH_1 PF00378.20 gi|55377678|ref|YP_135529.1| - 1.8e-58 197.8 0.0 2.6e-46 158.0 0.0 2.1 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|55377678|ref|YP_135529.1| - 1.6e-16 60.7 0.0 3.4e-15 56.4 0.0 2.3 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase CAP PF00188.26 gi|55377678|ref|YP_135529.1| - 0.062 14.1 0.0 0.49 11.2 0.0 2.3 1 1 1 2 2 2 0 Cysteine-rich secretory protein family MarR PF01047.22 gi|55377680|ref|YP_135530.1| - 0.00041 20.2 0.0 0.00055 19.8 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|55377680|ref|YP_135530.1| - 0.00083 19.5 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|55377680|ref|YP_135530.1| - 0.039 14.4 0.0 0.051 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|55377680|ref|YP_135530.1| - 0.073 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family AMP-binding PF00501.28 gi|55377681|ref|YP_135531.1| - 9.4e-76 255.1 1.0 1.1e-75 254.9 1.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55377681|ref|YP_135531.1| - 9.6e-19 68.1 0.8 4.5e-18 66.0 1.0 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.6 gi|55377682|ref|YP_135532.1| - 2.3e-45 154.9 4.8 3.9e-45 154.1 4.8 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|55377682|ref|YP_135532.1| - 0.00011 22.4 1.2 0.0029 17.8 0.3 3.0 2 1 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|55377683|ref|YP_135533.1| - 5.4e-35 120.9 21.4 8.2e-35 120.3 21.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family AMP-binding PF00501.28 gi|55377684|ref|YP_135534.1| - 5.3e-90 302.0 0.3 6.3e-90 301.8 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55377684|ref|YP_135534.1| - 5.9e-20 72.0 0.1 1.9e-19 70.4 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.7 gi|55377685|ref|YP_135535.1| - 8.7e-36 122.3 0.0 1.1e-23 83.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|55377685|ref|YP_135535.1| - 3.2e-21 75.6 3.9 7.8e-11 42.2 0.1 3.4 3 1 1 4 4 3 2 PAS fold PAS PF00989.25 gi|55377685|ref|YP_135535.1| - 8.2e-21 74.1 0.0 3.5e-10 39.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|55377685|ref|YP_135535.1| - 1.2e-20 73.7 0.4 7e-20 71.3 0.0 2.4 3 0 0 3 3 3 1 Response regulator receiver domain PAS_3 PF08447.12 gi|55377685|ref|YP_135535.1| - 3.9e-20 71.9 0.1 1.7e-11 44.2 0.0 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|55377685|ref|YP_135535.1| - 1.6e-18 67.2 0.0 4.1e-18 65.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|55377685|ref|YP_135535.1| - 4.9e-14 52.0 0.3 1.4e-06 28.2 0.0 3.5 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 gi|55377685|ref|YP_135535.1| - 7.2e-12 45.8 2.9 3.5e-11 43.5 0.3 3.0 3 0 0 3 3 2 1 GAF domain HisKA PF00512.25 gi|55377685|ref|YP_135535.1| - 3.8e-10 39.6 1.1 3.8e-10 39.6 1.1 2.6 4 0 0 4 4 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|55377685|ref|YP_135535.1| - 4e-08 33.7 0.0 1.1e-07 32.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|55377685|ref|YP_135535.1| - 1.5e-05 25.1 0.3 0.0032 17.6 0.0 3.7 3 1 0 3 3 3 1 PAS fold GAF PF01590.26 gi|55377685|ref|YP_135535.1| - 0.025 15.2 0.0 0.49 11.0 0.0 2.6 2 0 0 2 2 2 0 GAF domain HATPase_c_3 PF13589.6 gi|55377685|ref|YP_135535.1| - 0.091 12.6 0.0 0.27 11.1 0.0 1.8 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PLAC9 PF15205.6 gi|55377685|ref|YP_135535.1| - 0.14 12.6 0.0 0.54 10.7 0.0 2.0 1 0 0 1 1 1 0 Placenta-specific protein 9 DUF3280 PF11684.8 gi|55377685|ref|YP_135535.1| - 0.65 10.4 4.6 0.81 10.1 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2380) Cnn_1N PF07989.11 gi|55377686|ref|YP_135536.1| - 0.15 12.2 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 TPD52 PF04201.15 gi|55377686|ref|YP_135536.1| - 0.48 10.0 3.0 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Tumour protein D52 family SLATT_3 PF18184.1 gi|55377686|ref|YP_135536.1| - 1.3 9.1 5.7 7.7 6.6 1.1 2.1 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 Cwf_Cwc_15 PF04889.12 gi|55377686|ref|YP_135536.1| - 3.5 7.3 17.5 0.67 9.6 8.2 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein SGL PF08450.12 gi|55377687|ref|YP_135537.1| - 2.1e-09 37.3 3.2 1.7e-05 24.5 0.6 2.8 1 1 1 2 2 2 2 SMP-30/Gluconolactonase/LRE-like region DUF5122 PF17164.4 gi|55377687|ref|YP_135537.1| - 0.024 14.9 4.8 0.029 14.7 0.6 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5122) beta-propeller SBBP PF06739.11 gi|55377687|ref|YP_135537.1| - 0.34 10.9 2.8 21 5.2 0.3 2.7 2 0 0 2 2 2 0 Beta-propeller repeat NHL PF01436.21 gi|55377687|ref|YP_135537.1| - 0.4 10.8 8.4 47 4.3 0.1 5.1 5 1 0 5 5 5 0 NHL repeat DUF1980 PF09323.10 gi|55377688|ref|YP_135538.1| - 0.079 12.9 0.7 0.13 12.2 0.2 1.6 1 1 0 2 2 2 0 Domain of unknown function (DUF1980) PGF-CTERM PF18204.1 gi|55377689|ref|YP_135539.1| - 0.00017 21.4 3.2 0.0003 20.7 3.2 1.4 1 0 0 1 1 1 1 PGF-CTERM motif Glyco_hydro_2 PF00703.21 gi|55377689|ref|YP_135539.1| - 0.0091 16.7 0.6 0.83 10.4 0.2 2.6 2 1 0 2 2 2 1 Glycosyl hydrolases family 2 CARDB PF07705.11 gi|55377689|ref|YP_135539.1| - 0.053 13.8 3.3 0.064 13.5 0.3 2.3 1 1 2 3 3 3 0 CARDB DUF2797 PF10977.8 gi|55377690|ref|YP_135540.1| - 0.0035 17.3 0.1 0.0038 17.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2797) PBP PF01161.20 gi|55377691|ref|YP_135541.1| - 5.3e-31 107.7 0.1 8.3e-31 107.0 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Epimerase PF01370.21 gi|55377692|ref|YP_135542.1| - 1.3e-51 175.4 0.0 1.5e-51 175.2 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55377692|ref|YP_135542.1| - 1.7e-39 136.2 0.0 6.8e-39 134.2 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|55377692|ref|YP_135542.1| - 2.6e-19 69.5 0.0 1.1e-18 67.4 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|55377692|ref|YP_135542.1| - 3.1e-19 69.2 0.0 3.9e-19 68.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|55377692|ref|YP_135542.1| - 1.6e-17 63.5 0.0 2e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|55377692|ref|YP_135542.1| - 4.5e-15 56.0 0.0 1.1e-14 54.7 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|55377692|ref|YP_135542.1| - 1.1e-10 41.2 0.0 2.5e-05 23.6 0.0 2.8 1 1 0 2 2 2 2 Male sterility protein TrkA_N PF02254.18 gi|55377692|ref|YP_135542.1| - 3.9e-06 27.1 0.7 9.2e-06 25.9 0.2 1.8 2 0 0 2 2 2 1 TrkA-N domain adh_short PF00106.25 gi|55377692|ref|YP_135542.1| - 0.00012 21.6 0.3 0.0055 16.2 0.3 2.4 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|55377692|ref|YP_135542.1| - 0.001 18.7 0.1 0.0022 17.6 0.1 1.7 1 1 0 1 1 1 1 NmrA-like family Ldh_1_N PF00056.23 gi|55377692|ref|YP_135542.1| - 0.0063 16.6 0.1 0.011 15.9 0.1 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|55377692|ref|YP_135542.1| - 0.015 15.6 0.2 0.025 14.8 0.2 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|55377692|ref|YP_135542.1| - 0.12 12.5 0.1 0.22 11.7 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Thioredoxin_4 PF13462.6 gi|55377693|ref|YP_135543.1| - 2.5e-31 109.1 0.0 3.3e-31 108.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|55377693|ref|YP_135543.1| - 1.3e-10 41.4 1.5 1.8e-08 34.4 1.5 2.2 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Glyco_hydro_2_N PF02837.18 gi|55377693|ref|YP_135543.1| - 0.085 12.8 0.0 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, sugar binding domain TAT_signal PF10518.9 gi|55377693|ref|YP_135543.1| - 0.52 10.2 7.6 1.3 9.0 7.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Trm56 PF01994.16 gi|55377694|ref|YP_135544.1| - 7.2e-47 158.2 0.0 9.8e-47 157.8 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Sulfatase PF00884.23 gi|55377695|ref|YP_135545.1| - 4.6e-35 121.5 0.1 6.3e-35 121.1 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|55377695|ref|YP_135545.1| - 9.2e-12 45.2 0.2 6.4e-06 26.0 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|55377695|ref|YP_135545.1| - 3.4e-06 25.9 0.0 0.00011 21.0 0.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|55377695|ref|YP_135545.1| - 0.0016 17.5 0.1 0.0027 16.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Phosphoesterase PF04185.14 gi|55377695|ref|YP_135545.1| - 0.0096 15.1 0.2 0.26 10.4 0.1 2.1 2 0 0 2 2 2 1 Phosphoesterase family DHFR_1 PF00186.19 gi|55377696|ref|YP_135546.1| - 9.6e-34 116.4 0.0 2.6e-33 115.0 0.0 1.6 1 1 0 1 1 1 1 Dihydrofolate reductase TFIIS_C PF01096.18 gi|55377697|ref|YP_135547.1| - 0.0043 16.9 2.1 0.0049 16.7 0.1 1.9 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.6 gi|55377697|ref|YP_135547.1| - 0.0065 15.8 1.3 0.01 15.2 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55377697|ref|YP_135547.1| - 0.012 15.7 0.9 0.022 14.9 0.9 1.4 1 0 0 1 1 1 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|55377697|ref|YP_135547.1| - 0.3 11.0 0.3 0.3 11.0 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-H2C2_2 PF13465.6 gi|55377697|ref|YP_135547.1| - 0.36 11.4 2.6 0.39 11.2 0.1 2.0 2 0 0 2 2 2 0 Zinc-finger double domain TFIIE_alpha PF02002.17 gi|55377698|ref|YP_135548.1| - 2.3e-20 72.4 0.4 6.2e-20 71.0 0.0 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|55377698|ref|YP_135548.1| - 0.0026 17.8 0.0 0.008 16.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70 region 3 Desulfoferrod_N PF06397.12 gi|55377698|ref|YP_135548.1| - 0.0027 17.3 0.9 2 8.1 0.2 2.3 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain HypA PF01155.19 gi|55377698|ref|YP_135548.1| - 0.0036 17.3 0.1 0.005 16.8 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|55377698|ref|YP_135548.1| - 0.0078 15.8 1.4 2.7 7.7 0.1 2.5 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|55377698|ref|YP_135548.1| - 0.017 14.5 1.5 0.47 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55377698|ref|YP_135548.1| - 0.025 14.7 4.9 0.089 12.9 4.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|55377698|ref|YP_135548.1| - 0.055 13.5 0.4 0.096 12.7 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons TackOD1 PF18551.1 gi|55377698|ref|YP_135548.1| - 0.057 13.1 0.7 0.11 12.2 0.5 1.5 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|55377698|ref|YP_135548.1| - 0.065 12.0 0.1 0.085 11.6 0.1 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase PhnA_Zn_Ribbon PF08274.12 gi|55377698|ref|YP_135548.1| - 0.07 13.1 2.0 6.2 6.9 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|55377698|ref|YP_135548.1| - 0.083 12.6 3.3 1.4 8.8 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|55377698|ref|YP_135548.1| - 0.083 12.9 0.5 0.17 11.9 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.6 gi|55377698|ref|YP_135548.1| - 0.15 13.0 0.8 18 6.5 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.7 gi|55377698|ref|YP_135548.1| - 0.2 11.7 2.6 1.5 8.9 0.1 2.3 1 1 2 3 3 3 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|55377698|ref|YP_135548.1| - 0.21 11.1 5.8 2.2 7.9 0.5 2.7 1 1 1 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|55377698|ref|YP_135548.1| - 0.59 10.0 3.0 14 5.7 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.6 gi|55377698|ref|YP_135548.1| - 0.62 10.2 3.3 6.5 6.9 2.8 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2110 PF09883.9 gi|55377699|ref|YP_135549.1| - 3.8e-89 298.1 0.0 4.4e-89 297.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) Nop PF01798.18 gi|55377701|ref|YP_135551.1| - 3.3e-38 131.5 0.0 6.8e-38 130.4 0.0 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|55377702|ref|YP_135552.1| - 1.4e-58 197.7 0.0 1.6e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Histidinol_dh PF00815.20 gi|55377702|ref|YP_135552.1| - 0.073 12.1 0.1 0.093 11.7 0.1 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase GCS2 PF04107.13 gi|55377703|ref|YP_135553.1| - 2.9e-75 253.3 0.1 3.5e-75 253.1 0.1 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|55377703|ref|YP_135553.1| - 0.13 11.9 0.1 1.3 8.6 0.1 2.1 1 1 0 1 1 1 0 Putative amidoligase enzyme TrmB PF01978.19 gi|55377704|ref|YP_135554.1| - 1.8e-07 30.9 0.1 2.7e-07 30.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|55377704|ref|YP_135554.1| - 3e-07 29.9 0.0 4.7e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55377704|ref|YP_135554.1| - 9e-06 25.7 0.2 1.7e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55377704|ref|YP_135554.1| - 5.1e-05 23.0 0.1 8.3e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|55377704|ref|YP_135554.1| - 8.1e-05 22.2 0.2 0.00019 21.0 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|55377704|ref|YP_135554.1| - 0.00016 21.5 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|55377704|ref|YP_135554.1| - 0.00017 21.4 0.0 0.00032 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|55377704|ref|YP_135554.1| - 0.0019 18.1 0.0 0.0026 17.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|55377704|ref|YP_135554.1| - 0.0021 17.9 0.2 0.0036 17.1 0.2 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|55377704|ref|YP_135554.1| - 0.0032 17.8 0.0 0.0051 17.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.11 gi|55377704|ref|YP_135554.1| - 0.013 15.6 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55377704|ref|YP_135554.1| - 0.02 14.9 0.1 0.033 14.1 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55377704|ref|YP_135554.1| - 0.039 13.8 0.1 0.086 12.7 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3369 PF11849.8 gi|55377704|ref|YP_135554.1| - 0.049 13.8 0.0 0.092 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3369) RepL PF05732.11 gi|55377704|ref|YP_135554.1| - 0.1 12.1 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Sigma70_r3 PF04539.16 gi|55377704|ref|YP_135554.1| - 0.47 10.6 0.1 0.47 10.6 0.1 2.7 3 0 0 3 3 3 0 Sigma-70 region 3 CTP_transf_like PF01467.26 gi|55377705|ref|YP_135555.1| - 4.4e-12 46.4 0.0 5.7e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|55377705|ref|YP_135555.1| - 0.0039 17.1 0.1 0.022 14.7 0.1 1.9 2 0 0 2 2 2 1 FAD synthetase TFIIB PF00382.19 gi|55377706|ref|YP_135556.1| - 4.5e-06 26.6 0.3 7.3e-06 25.9 0.3 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.6 gi|55377706|ref|YP_135556.1| - 0.0022 18.1 0.1 0.0037 17.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|55377706|ref|YP_135556.1| - 0.031 13.8 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|55377706|ref|YP_135556.1| - 0.051 13.4 0.2 0.084 12.7 0.2 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|55377706|ref|YP_135556.1| - 0.051 13.4 0.0 0.097 12.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|55377706|ref|YP_135556.1| - 0.053 12.9 0.2 0.083 12.3 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_19 PF12844.7 gi|55377708|ref|YP_135558.1| - 0.00011 22.1 0.0 0.00022 21.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|55377708|ref|YP_135558.1| - 0.0005 20.4 1.0 0.00083 19.7 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|55377708|ref|YP_135558.1| - 0.0027 17.7 0.1 0.0043 17.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix Acyl-CoA_dh_1 PF00441.24 gi|55377709|ref|YP_135559.1| - 6.6e-58 195.2 3.9 1.1e-57 194.4 3.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55377709|ref|YP_135559.1| - 9.4e-31 106.9 5.0 9.4e-31 106.9 5.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|55377709|ref|YP_135559.1| - 5e-28 98.0 0.3 1.6e-27 96.4 0.0 2.0 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55377709|ref|YP_135559.1| - 6.1e-28 96.9 0.0 1.3e-27 95.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 gi|55377709|ref|YP_135559.1| - 0.0082 15.8 0.0 0.17 11.5 0.0 2.1 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.6 gi|55377710|ref|YP_135560.1| - 3.3e-16 59.9 0.0 3.7e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55377710|ref|YP_135560.1| - 2.4e-09 37.8 0.1 3.5e-09 37.3 0.1 1.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55377710|ref|YP_135560.1| - 1.1e-07 31.8 0.1 4.1e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|55377710|ref|YP_135560.1| - 0.0082 16.6 0.1 0.0099 16.3 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pantoate_transf PF02548.15 gi|55377712|ref|YP_135562.1| - 1.8e-97 325.8 0.4 2e-97 325.7 0.4 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|55377712|ref|YP_135562.1| - 8.2e-07 28.7 2.7 2.9e-06 26.9 0.7 2.2 1 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase KORA PF16509.5 gi|55377712|ref|YP_135562.1| - 0.097 13.0 0.0 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor COX2 PF00116.20 gi|55377713|ref|YP_135563.1| - 5.1e-17 61.9 0.8 3e-16 59.4 0.0 2.0 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|55377713|ref|YP_135563.1| - 8.1e-09 35.5 0.1 1.3e-08 34.9 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|55377713|ref|YP_135563.1| - 8.5e-07 29.0 0.0 1.6e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.20 gi|55377714|ref|YP_135564.1| - 2.2e-136 455.2 56.9 2.2e-136 455.2 56.9 2.5 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF4383 PF14325.6 gi|55377715|ref|YP_135565.1| - 0.03 14.6 1.4 0.13 12.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4383) COX3 PF00510.18 gi|55377716|ref|YP_135566.1| - 1.7e-35 123.1 6.9 2.6e-35 122.5 6.9 1.3 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III BATS PF06968.13 gi|55377717|ref|YP_135567.1| - 4.8e-16 58.7 0.0 6.6e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain ELFV_dehydrog PF00208.21 gi|55377718|ref|YP_135568.1| - 0.00048 19.9 0.0 0.00094 19.0 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|55377718|ref|YP_135568.1| - 0.02 15.7 2.5 0.81 10.5 0.1 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Aminotran_1_2 PF00155.21 gi|55377719|ref|YP_135569.1| - 4.8e-58 197.1 0.0 5.4e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|55377719|ref|YP_135569.1| - 0.00019 20.1 0.0 0.00028 19.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|55377719|ref|YP_135569.1| - 0.0079 15.5 0.2 0.016 14.5 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family AAA_26 PF13500.6 gi|55377721|ref|YP_135571.1| - 3e-33 115.3 0.0 1.9e-32 112.7 0.0 2.3 2 1 2 4 4 4 1 AAA domain DRTGG PF07085.12 gi|55377721|ref|YP_135571.1| - 1.7e-30 104.9 0.8 5e-30 103.4 0.2 2.0 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|55377721|ref|YP_135571.1| - 0.00055 20.0 0.0 0.0012 18.9 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.16 gi|55377721|ref|YP_135571.1| - 0.0066 16.5 0.0 0.015 15.3 0.0 1.6 2 0 0 2 2 2 1 HPr Serine kinase N terminus IstB_IS21 PF01695.17 gi|55377721|ref|YP_135571.1| - 0.082 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein PucR PF07905.11 gi|55377721|ref|YP_135571.1| - 0.13 12.6 0.3 5.2 7.4 0.0 2.6 1 1 1 2 2 2 0 Purine catabolism regulatory protein-like family ATP-grasp_5 PF13549.6 gi|55377722|ref|YP_135572.1| - 1.5e-72 243.7 0.5 3e-72 242.7 0.5 1.5 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|55377722|ref|YP_135572.1| - 1.2e-51 174.1 0.2 3e-51 172.8 0.2 1.7 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|55377722|ref|YP_135572.1| - 1.1e-22 80.6 1.8 1.8e-22 80.0 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|55377722|ref|YP_135572.1| - 2.7e-14 53.6 1.4 9.9e-14 51.8 1.4 2.1 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|55377722|ref|YP_135572.1| - 1.8e-05 24.4 0.0 4.4e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.22 gi|55377722|ref|YP_135572.1| - 0.00094 20.0 0.3 0.0063 17.3 0.1 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF4089 PF13318.6 gi|55377722|ref|YP_135572.1| - 0.051 14.0 0.3 3.5 8.2 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4089) Zincin_1 PF06262.11 gi|55377723|ref|YP_135573.1| - 0.0089 16.1 0.1 0.012 15.7 0.1 1.4 1 0 0 1 1 1 1 Zincin-like metallopeptidase Ferritin PF00210.24 gi|55377724|ref|YP_135574.1| - 9.7e-34 116.3 6.4 1.2e-33 116.1 6.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|55377724|ref|YP_135574.1| - 0.0013 19.0 2.2 0.021 15.2 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) YafQ_toxin PF15738.5 gi|55377724|ref|YP_135574.1| - 0.47 10.8 5.4 1.3 9.4 0.7 2.4 2 1 0 2 2 2 0 Bacterial toxin of type II toxin-antitoxin system, YafQ CorA PF01544.18 gi|55377726|ref|YP_135576.1| - 0.0022 17.3 0.3 0.0022 17.3 0.3 1.4 2 0 0 2 2 2 1 CorA-like Mg2+ transporter protein TetR_C_11 PF16859.5 gi|55377726|ref|YP_135576.1| - 0.014 15.7 8.6 0.016 15.5 4.9 2.2 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Syntaxin-6_N PF09177.11 gi|55377726|ref|YP_135576.1| - 0.021 15.3 4.0 5.7 7.6 0.0 3.3 2 1 1 3 3 3 0 Syntaxin 6, N-terminal TPR_11 PF13414.6 gi|55377726|ref|YP_135576.1| - 0.035 13.8 0.1 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 TPR repeat TPR_14 PF13428.6 gi|55377726|ref|YP_135576.1| - 0.048 14.5 2.0 3 8.9 0.4 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|55377726|ref|YP_135576.1| - 0.11 12.6 2.2 0.37 11.0 2.2 2.0 1 1 0 1 1 1 0 Tetratricopeptide repeat DUF5063 PF16702.5 gi|55377726|ref|YP_135576.1| - 0.15 12.5 0.8 0.27 11.6 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5063) TPR_2 PF07719.17 gi|55377726|ref|YP_135576.1| - 0.24 11.6 1.9 47 4.4 0.0 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat DUF4164 PF13747.6 gi|55377726|ref|YP_135576.1| - 0.32 11.3 8.4 0.27 11.6 4.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) TPR_10 PF13374.6 gi|55377726|ref|YP_135576.1| - 0.64 10.0 2.9 19 5.3 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat MDMPI_N PF11716.8 gi|55377726|ref|YP_135576.1| - 0.7 10.6 6.8 0.46 11.2 4.4 1.9 2 1 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain COMP PF11598.8 gi|55377726|ref|YP_135576.1| - 2.6 8.6 5.1 37 4.9 1.4 2.9 2 1 0 2 2 2 0 Cartilage oligomeric matrix protein 5_nucleotid_C PF02872.18 gi|55377728|ref|YP_135578.1| - 6.5e-47 159.7 0.1 1.5e-46 158.5 0.1 1.6 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain ZnuA PF01297.17 gi|55377728|ref|YP_135578.1| - 0.018 14.4 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic OB_aCoA_assoc PF01796.17 gi|55377729|ref|YP_135579.1| - 5.2e-05 23.2 1.8 0.00015 21.6 1.8 1.7 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|55377729|ref|YP_135579.1| - 0.003 17.4 0.3 0.005 16.7 0.3 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|55377730|ref|YP_135580.1| - 6.9e-59 199.3 0.0 9.4e-59 198.9 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|55377730|ref|YP_135580.1| - 7.3e-09 35.3 1.8 2.5e-08 33.6 0.4 2.3 3 0 0 3 3 3 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|55377730|ref|YP_135580.1| - 0.004 17.2 0.2 8 6.5 0.0 3.6 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|55377730|ref|YP_135580.1| - 0.052 13.1 1.1 1.3 8.5 0.2 2.5 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain UpxZ PF06603.11 gi|55377731|ref|YP_135581.1| - 0.035 14.4 0.0 0.057 13.7 0.0 1.2 1 0 0 1 1 1 0 UpxZ family of transcription anti-terminator antagonists Peripla_BP_2 PF01497.18 gi|55377732|ref|YP_135582.1| - 2.9e-20 72.9 0.0 4.8e-20 72.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TF_Zn_Ribbon PF08271.12 gi|55377733|ref|YP_135583.1| - 0.0019 17.6 0.2 0.0033 16.9 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TackOD1 PF18551.1 gi|55377733|ref|YP_135583.1| - 0.0081 15.8 0.1 0.009 15.7 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TusA PF01206.17 gi|55377733|ref|YP_135583.1| - 0.015 15.1 0.1 0.019 14.8 0.1 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA Lar_restr_allev PF14354.6 gi|55377733|ref|YP_135583.1| - 0.016 15.6 0.1 0.02 15.3 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.6 gi|55377733|ref|YP_135583.1| - 0.028 14.3 0.1 5.8 6.9 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|55377733|ref|YP_135583.1| - 0.075 13.1 0.7 0.44 10.6 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like ADK_lid PF05191.14 gi|55377733|ref|YP_135583.1| - 0.095 12.7 0.8 0.14 12.1 0.8 1.3 1 1 0 1 1 1 0 Adenylate kinase, active site lid Stc1 PF12898.7 gi|55377733|ref|YP_135583.1| - 0.11 13.1 1.1 0.24 12.0 1.1 1.6 1 1 0 1 1 1 0 Stc1 domain zf_UBZ PF18439.1 gi|55377733|ref|YP_135583.1| - 0.11 12.1 1.3 0.35 10.5 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger HypA PF01155.19 gi|55377733|ref|YP_135583.1| - 0.13 12.3 0.7 0.16 12.0 0.7 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|55377733|ref|YP_135583.1| - 0.13 12.2 2.7 1.1 9.3 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-Mss51 PF13824.6 gi|55377733|ref|YP_135583.1| - 0.15 12.2 1.5 0.98 9.6 2.1 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|55377733|ref|YP_135583.1| - 0.28 10.9 4.5 1.7 8.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-H2C2_2 PF13465.6 gi|55377733|ref|YP_135583.1| - 0.34 11.4 1.0 31 5.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.10 gi|55377733|ref|YP_135583.1| - 0.78 9.9 4.7 6.6 6.9 0.6 2.4 1 1 2 3 3 3 0 Zinc ribbon domain OAD_gamma PF04277.13 gi|55377734|ref|YP_135584.1| - 1.1 10.0 7.4 0.32 11.6 4.7 1.5 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.22 gi|55377735|ref|YP_135585.1| - 1.2e-195 650.9 0.0 1.3e-195 650.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|55377735|ref|YP_135585.1| - 0.0024 17.4 0.0 0.0071 15.9 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) adh_short_C2 PF13561.6 gi|55377736|ref|YP_135586.1| - 1.6e-62 211.2 1.4 1.9e-62 210.9 1.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55377736|ref|YP_135586.1| - 1.5e-57 194.3 0.7 1.7e-57 194.0 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|55377736|ref|YP_135586.1| - 1.8e-20 73.6 0.3 2.5e-20 73.1 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55377736|ref|YP_135586.1| - 0.0061 16.1 0.2 0.0085 15.6 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TRAP_beta PF05753.14 gi|55377736|ref|YP_135586.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) RGP PF03214.13 gi|55377737|ref|YP_135587.1| - 5.8e-17 61.9 0.0 6.2e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_8 PF13416.6 gi|55377738|ref|YP_135588.1| - 1.7e-16 60.9 0.0 2.1e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|55377738|ref|YP_135588.1| - 2.7e-14 53.2 0.0 3.6e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55377738|ref|YP_135588.1| - 2.2e-06 27.9 0.1 4.8e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|55377738|ref|YP_135588.1| - 0.00014 21.7 0.8 0.00039 20.2 0.8 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55377738|ref|YP_135588.1| - 0.0087 15.9 3.3 0.026 14.3 3.3 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|55377739|ref|YP_135589.1| - 1.5e-24 86.7 33.9 2e-14 53.7 13.8 3.8 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|55377740|ref|YP_135590.1| - 1.8e-35 122.5 0.0 3.1e-35 121.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|55377740|ref|YP_135590.1| - 3e-09 36.9 0.5 9.2e-09 35.4 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|55377740|ref|YP_135590.1| - 6.3e-07 29.5 0.1 0.0096 15.8 0.0 2.9 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|55377740|ref|YP_135590.1| - 0.0014 18.6 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|55377740|ref|YP_135590.1| - 0.002 18.5 0.1 0.025 15.0 0.1 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|55377740|ref|YP_135590.1| - 0.0036 17.6 0.8 0.019 15.3 0.8 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|55377740|ref|YP_135590.1| - 0.0051 17.2 0.4 0.015 15.7 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain G-alpha PF00503.20 gi|55377740|ref|YP_135590.1| - 0.03 13.5 0.0 0.04 13.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit SbcCD_C PF13558.6 gi|55377740|ref|YP_135590.1| - 0.033 14.4 0.3 0.41 10.9 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|55377740|ref|YP_135590.1| - 0.048 13.6 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|55377740|ref|YP_135590.1| - 0.052 13.8 0.7 0.36 11.1 0.7 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|55377740|ref|YP_135590.1| - 0.072 12.5 0.2 0.64 9.4 0.0 2.0 1 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|55377740|ref|YP_135590.1| - 0.095 12.9 0.0 3.6 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain PMT_2 PF13231.6 gi|55377741|ref|YP_135591.1| - 2.4e-07 31.1 8.1 2.4e-07 31.1 8.1 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_22 PF03901.17 gi|55377741|ref|YP_135591.1| - 0.087 12.0 0.5 0.13 11.5 0.5 1.1 1 0 0 1 1 1 0 Alg9-like mannosyltransferase family Gluconate_2-dh3 PF13618.6 gi|55377742|ref|YP_135592.1| - 6.1e-10 39.5 0.0 1.1e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.9 gi|55377742|ref|YP_135592.1| - 0.48 10.4 9.8 2.1 8.3 9.8 2.1 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_2 PF00535.26 gi|55377743|ref|YP_135593.1| - 6.5e-21 74.9 0.0 8.2e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377743|ref|YP_135593.1| - 0.0016 18.4 0.4 0.0024 17.8 0.4 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF1724 PF08350.10 gi|55377744|ref|YP_135594.1| - 4.1e-11 42.8 0.0 6.9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.19 gi|55377744|ref|YP_135594.1| - 0.005 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.12 gi|55377744|ref|YP_135594.1| - 0.019 13.3 0.0 0.026 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) PadR PF03551.14 gi|55377744|ref|YP_135594.1| - 0.024 14.6 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|55377744|ref|YP_135594.1| - 0.045 13.6 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Ribosomal_S19e PF01090.19 gi|55377744|ref|YP_135594.1| - 0.066 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e Regulator_TrmB PF11495.8 gi|55377745|ref|YP_135595.1| - 4.9e-70 235.3 0.2 7.1e-70 234.8 0.2 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|55377745|ref|YP_135595.1| - 1.6e-20 72.7 0.0 3.3e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|55377745|ref|YP_135595.1| - 4.9e-05 23.3 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55377745|ref|YP_135595.1| - 0.00028 20.7 0.0 0.00065 19.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|55377745|ref|YP_135595.1| - 0.00031 20.5 0.1 0.002 17.9 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|55377745|ref|YP_135595.1| - 0.00049 19.8 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|55377745|ref|YP_135595.1| - 0.012 16.0 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|55377745|ref|YP_135595.1| - 0.016 15.3 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|55377745|ref|YP_135595.1| - 0.055 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_24 PF13412.6 gi|55377745|ref|YP_135595.1| - 0.062 12.9 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|55377745|ref|YP_135595.1| - 0.085 13.0 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain SBP_bac_8 PF13416.6 gi|55377746|ref|YP_135596.1| - 5.3e-25 88.8 8.0 8.5e-25 88.1 8.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55377746|ref|YP_135596.1| - 2.3e-17 63.9 7.1 3.3e-17 63.4 7.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55377746|ref|YP_135596.1| - 0.18 11.7 7.6 0.39 10.6 7.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glu_dehyd_C PF16912.5 gi|55377747|ref|YP_135597.1| - 2.6e-97 324.4 0.0 3.3e-97 324.1 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|55377747|ref|YP_135597.1| - 2.5e-10 40.2 0.0 3.9e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|55377747|ref|YP_135597.1| - 0.0014 18.5 0.1 0.003 17.4 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|55377747|ref|YP_135597.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.22 gi|55377748|ref|YP_135598.1| - 2.6e-25 89.6 0.2 4.4e-25 88.8 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|55377748|ref|YP_135598.1| - 5.4e-08 32.8 0.1 1.4e-07 31.5 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|55377748|ref|YP_135598.1| - 0.00056 20.4 0.0 0.0011 19.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|55377748|ref|YP_135598.1| - 0.006 17.2 0.2 0.01 16.5 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|55377748|ref|YP_135598.1| - 0.02 14.3 0.1 0.16 11.3 0.0 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|55377748|ref|YP_135598.1| - 0.028 14.0 0.0 0.044 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Semialdhyde_dh PF01118.24 gi|55377748|ref|YP_135598.1| - 0.03 14.8 0.0 0.064 13.7 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|55377748|ref|YP_135598.1| - 0.04 14.6 0.1 0.08 13.6 0.1 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_2 PF03446.15 gi|55377748|ref|YP_135598.1| - 0.055 13.6 0.0 0.12 12.5 0.1 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase HTH_Tnp_ISL3 PF13542.6 gi|55377748|ref|YP_135598.1| - 0.079 12.4 0.0 0.18 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HemY_N PF07219.13 gi|55377749|ref|YP_135599.1| - 0.055 13.7 0.0 0.07 13.3 0.0 1.1 1 0 0 1 1 1 0 HemY protein N-terminus COX14 PF14880.6 gi|55377749|ref|YP_135599.1| - 0.12 12.2 0.1 0.17 11.8 0.1 1.3 1 1 0 1 1 1 0 Cytochrome oxidase c assembly stn_TNFRSF12A PF12191.8 gi|55377749|ref|YP_135599.1| - 0.15 12.2 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain ABC_tran PF00005.27 gi|55377750|ref|YP_135600.1| - 3.5e-33 115.0 0.0 6.1e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|55377750|ref|YP_135600.1| - 7.5e-13 49.1 0.1 2e-12 47.7 0.1 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|55377750|ref|YP_135600.1| - 3.1e-06 27.2 0.0 0.038 13.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377750|ref|YP_135600.1| - 3.7e-05 23.3 0.3 0.025 14.0 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|55377750|ref|YP_135600.1| - 0.0003 20.6 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain CysA_C_terminal PF17850.1 gi|55377750|ref|YP_135600.1| - 0.0012 19.4 0.0 0.0038 17.8 0.0 1.9 2 0 0 2 2 1 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|55377750|ref|YP_135600.1| - 0.0015 18.7 0.0 0.01 16.0 0.0 2.5 2 1 0 2 2 2 1 TOBE domain AAA_29 PF13555.6 gi|55377750|ref|YP_135600.1| - 0.0028 17.3 0.1 0.0075 16.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|55377750|ref|YP_135600.1| - 0.0041 17.1 0.0 0.0063 16.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|55377750|ref|YP_135600.1| - 0.012 16.0 0.0 0.033 14.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|55377750|ref|YP_135600.1| - 0.014 15.8 0.3 0.22 12.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|55377750|ref|YP_135600.1| - 0.017 15.4 0.3 0.041 14.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|55377750|ref|YP_135600.1| - 0.018 15.0 0.0 0.047 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|55377750|ref|YP_135600.1| - 0.024 14.5 0.0 0.054 13.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|55377750|ref|YP_135600.1| - 0.04 14.4 0.1 0.082 13.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55377750|ref|YP_135600.1| - 0.059 13.6 0.2 0.15 12.3 0.2 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55377750|ref|YP_135600.1| - 0.066 13.6 0.1 0.17 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|55377750|ref|YP_135600.1| - 0.099 13.2 0.8 1.3 9.6 0.3 2.7 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|55377750|ref|YP_135600.1| - 0.15 12.2 0.1 0.45 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|55377750|ref|YP_135600.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|55377750|ref|YP_135600.1| - 0.23 11.2 0.3 1.3 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|55377751|ref|YP_135601.1| - 1.5e-11 44.4 20.9 1.5e-11 44.4 20.9 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55377752|ref|YP_135602.1| - 8.1e-14 51.8 20.7 8.1e-14 51.8 20.7 2.6 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|55377753|ref|YP_135603.1| - 1.6e-14 54.6 1.0 4.8e-14 53.0 1.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55377753|ref|YP_135603.1| - 0.005 16.6 6.8 0.005 16.6 6.8 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Regulator_TrmB PF11495.8 gi|55377754|ref|YP_135604.1| - 1.8e-77 259.7 0.6 2.2e-77 259.4 0.6 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|55377754|ref|YP_135604.1| - 5.5e-15 55.0 0.0 1.2e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55377754|ref|YP_135604.1| - 0.0015 18.4 0.0 0.0037 17.1 0.0 1.7 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|55377754|ref|YP_135604.1| - 0.0072 16.3 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|55377754|ref|YP_135604.1| - 0.14 12.7 0.0 0.38 11.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|55377754|ref|YP_135604.1| - 0.16 12.4 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Aldo_ket_red PF00248.21 gi|55377755|ref|YP_135605.1| - 6.3e-79 265.2 0.0 7.9e-79 264.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TackOD1 PF18551.1 gi|55377756|ref|YP_135606.1| - 0.013 15.2 0.2 0.025 14.3 0.2 1.4 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 FdhE PF04216.12 gi|55377756|ref|YP_135606.1| - 0.016 15.1 0.1 0.023 14.6 0.1 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.6 gi|55377756|ref|YP_135606.1| - 0.068 12.6 4.5 0.41 10.1 2.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|55377756|ref|YP_135606.1| - 0.071 12.8 0.5 8.3 6.2 0.0 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc-ribbons_6 PF07191.12 gi|55377756|ref|YP_135606.1| - 0.091 12.8 2.4 0.19 11.8 2.4 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|55377756|ref|YP_135606.1| - 0.098 12.8 3.9 9.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF3039 PF11238.8 gi|55377756|ref|YP_135606.1| - 0.1 12.4 2.4 0.18 11.6 1.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) Rad50_zn_hook PF04423.14 gi|55377756|ref|YP_135606.1| - 0.12 12.2 1.8 1.5 8.7 0.1 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-TFIIB PF13453.6 gi|55377756|ref|YP_135606.1| - 0.25 10.7 4.0 8.6 5.8 1.2 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger TerY_C PF15616.6 gi|55377756|ref|YP_135606.1| - 0.49 10.5 3.3 0.24 11.5 1.1 1.6 2 0 0 2 2 2 0 TerY-C metal binding domain zinc_ribbon_9 PF14369.6 gi|55377756|ref|YP_135606.1| - 0.56 10.5 3.8 15 5.9 0.8 2.5 2 0 0 2 2 2 0 zinc-ribbon DNA_ligase_ZBD PF03119.16 gi|55377756|ref|YP_135606.1| - 1.6 8.8 8.9 0.097 12.7 1.2 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Pribosyltran PF00156.27 gi|55377757|ref|YP_135607.1| - 5.1e-15 55.3 0.0 8.5e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|55377757|ref|YP_135607.1| - 0.0018 18.0 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.6 gi|55377757|ref|YP_135607.1| - 0.0067 15.9 0.2 0.028 13.9 0.2 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.15 gi|55377757|ref|YP_135607.1| - 0.019 15.0 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|55377757|ref|YP_135607.1| - 0.035 14.0 0.1 0.1 12.6 0.1 1.8 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.16 gi|55377757|ref|YP_135607.1| - 0.046 13.3 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|55377757|ref|YP_135607.1| - 0.071 12.9 0.3 0.53 10.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|55377757|ref|YP_135607.1| - 0.074 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPRTase PF14681.6 gi|55377757|ref|YP_135607.1| - 0.17 11.3 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_Crp_2 PF13545.6 gi|55377757|ref|YP_135607.1| - 0.19 11.7 0.0 0.42 10.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Thiolase_N PF00108.23 gi|55377759|ref|YP_135609.1| - 3.3e-30 105.3 1.2 5.2e-30 104.7 1.2 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|55377759|ref|YP_135609.1| - 1.1e-12 48.1 6.4 2.8e-10 40.2 4.7 3.1 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|55377759|ref|YP_135609.1| - 9.6e-09 35.0 0.1 3e-08 33.4 0.1 1.9 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|55377759|ref|YP_135609.1| - 0.00091 19.0 3.1 0.029 14.2 0.7 2.4 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|55377759|ref|YP_135609.1| - 0.0024 17.9 3.0 0.13 12.3 0.5 3.6 2 2 1 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|55377760|ref|YP_135610.1| - 5.8e-09 35.8 2.1 8e-09 35.4 2.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|55377760|ref|YP_135610.1| - 0.008 16.0 2.4 0.013 15.4 2.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.7 gi|55377761|ref|YP_135611.1| - 2.9e-19 70.6 6.9 4e-19 70.1 6.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|55377761|ref|YP_135611.1| - 6.8e-12 45.6 0.1 1.8e-11 44.2 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|55377761|ref|YP_135611.1| - 4.4e-06 26.1 0.0 7.1e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 MeaB PF03308.16 gi|55377762|ref|YP_135612.1| - 2.8e-90 301.9 3.6 3.5e-90 301.6 3.6 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|55377762|ref|YP_135612.1| - 1e-06 28.4 1.3 1.5e-05 24.6 1.3 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|55377762|ref|YP_135612.1| - 3.8e-05 23.4 0.6 0.00011 21.9 0.6 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|55377762|ref|YP_135612.1| - 4.1e-05 23.5 0.1 0.00017 21.5 0.1 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|55377762|ref|YP_135612.1| - 4.8e-05 23.3 0.3 0.00016 21.6 0.1 2.0 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.6 gi|55377762|ref|YP_135612.1| - 0.00013 21.8 0.8 0.00023 20.9 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|55377762|ref|YP_135612.1| - 0.00019 21.7 0.5 0.0045 17.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|55377762|ref|YP_135612.1| - 0.00067 19.2 0.0 0.43 10.1 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|55377762|ref|YP_135612.1| - 0.0013 19.1 6.4 0.2 12.0 6.4 2.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|55377762|ref|YP_135612.1| - 0.0024 17.6 0.2 0.0072 16.0 0.2 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|55377762|ref|YP_135612.1| - 0.0029 16.9 0.1 0.0055 16.0 0.1 1.4 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.27 gi|55377762|ref|YP_135612.1| - 0.0048 17.4 0.0 0.0088 16.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|55377762|ref|YP_135612.1| - 0.0076 16.2 0.0 0.19 11.6 0.0 2.7 3 0 0 3 3 3 1 RsgA GTPase NB-ARC PF00931.22 gi|55377762|ref|YP_135612.1| - 0.011 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|55377762|ref|YP_135612.1| - 0.012 16.1 0.6 0.17 12.4 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|55377762|ref|YP_135612.1| - 0.019 15.3 0.5 0.12 12.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|55377762|ref|YP_135612.1| - 0.026 13.8 0.0 0.047 12.9 0.0 1.5 1 0 0 1 1 1 0 KAP family P-loop domain MobB PF03205.14 gi|55377762|ref|YP_135612.1| - 0.026 14.4 0.0 0.091 12.7 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|55377762|ref|YP_135612.1| - 0.04 14.0 0.0 0.074 13.1 0.0 1.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|55377762|ref|YP_135612.1| - 0.05 13.5 0.3 0.22 11.5 0.1 2.1 2 0 0 2 2 2 0 NACHT domain PRK PF00485.18 gi|55377762|ref|YP_135612.1| - 0.069 12.9 0.2 0.15 11.8 0.2 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.10 gi|55377762|ref|YP_135612.1| - 0.083 12.3 0.0 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA PF00004.29 gi|55377762|ref|YP_135612.1| - 0.087 13.2 0.1 1 9.8 0.0 2.6 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|55377762|ref|YP_135612.1| - 0.089 13.2 0.6 0.31 11.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|55377762|ref|YP_135612.1| - 0.13 12.5 1.8 0.24 11.6 0.2 2.2 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|55377762|ref|YP_135612.1| - 0.14 11.3 0.0 0.27 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PIF1 PF05970.14 gi|55377762|ref|YP_135612.1| - 0.19 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_33 PF13671.6 gi|55377762|ref|YP_135612.1| - 0.2 11.8 0.8 0.32 11.1 0.1 1.7 2 0 0 2 2 1 0 AAA domain ParA PF10609.9 gi|55377762|ref|YP_135612.1| - 0.49 9.8 3.5 1.9 7.9 3.5 1.9 1 1 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase B12-binding PF02310.19 gi|55377763|ref|YP_135613.1| - 1.6e-23 83.0 0.7 2.4e-23 82.5 0.7 1.3 1 0 0 1 1 1 1 B12 binding domain DUF2304 PF10066.9 gi|55377765|ref|YP_135615.1| - 6.6e-17 61.7 6.0 7.6e-17 61.5 6.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF2206 PF09971.9 gi|55377765|ref|YP_135615.1| - 0.14 10.9 1.5 0.14 10.9 1.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) DUF2417 PF10329.9 gi|55377765|ref|YP_135615.1| - 4.8 6.5 7.3 5.5 6.3 1.6 2.0 1 1 1 2 2 2 0 Region of unknown function (DUF2417) DUF3473 PF11959.8 gi|55377766|ref|YP_135616.1| - 6.2e-26 91.0 0.0 9.1e-26 90.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.21 gi|55377766|ref|YP_135616.1| - 1.1e-22 80.2 0.0 1.9e-22 79.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|55377766|ref|YP_135616.1| - 0.25 10.5 0.0 0.35 10.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 LPG_synthase_TM PF03706.13 gi|55377767|ref|YP_135617.1| - 7.8e-17 61.8 30.8 8.7e-17 61.6 30.8 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region PMT_2 PF13231.6 gi|55377768|ref|YP_135618.1| - 4.5e-12 46.5 12.8 4.5e-12 46.5 12.8 3.1 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|55377768|ref|YP_135618.1| - 9.4e-07 28.7 10.4 3e-06 27.0 10.4 1.9 1 1 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4131 PF13567.6 gi|55377768|ref|YP_135618.1| - 0.19 11.4 0.0 0.19 11.4 0.0 4.8 3 2 3 6 6 6 0 Domain of unknown function (DUF4131) Glycos_transf_2 PF00535.26 gi|55377769|ref|YP_135619.1| - 5.4e-19 68.6 0.0 7.1e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377769|ref|YP_135619.1| - 2.1e-10 40.9 0.4 1.2e-09 38.4 0.4 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|55377769|ref|YP_135619.1| - 7.8e-08 32.5 0.2 1.3e-07 31.7 0.2 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|55377769|ref|YP_135619.1| - 3.6e-05 23.3 0.0 7.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.7 gi|55377769|ref|YP_135619.1| - 0.00062 20.2 0.2 0.00091 19.6 0.2 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_2 PF10111.9 gi|55377769|ref|YP_135619.1| - 0.0011 18.5 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 MCPsignal PF00015.21 gi|55377770|ref|YP_135620.1| - 7e-44 149.7 63.8 3.3e-43 147.5 22.3 5.0 2 2 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|55377770|ref|YP_135620.1| - 3.8e-06 27.1 47.3 0.017 15.4 2.4 6.3 3 2 1 4 4 4 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|55377770|ref|YP_135620.1| - 1.7e-05 24.9 42.7 0.0028 17.7 7.4 5.4 2 1 3 5 5 5 3 Laminin Domain II DUF1664 PF07889.12 gi|55377770|ref|YP_135620.1| - 2e-05 24.6 37.7 0.0055 16.7 2.5 5.8 3 2 3 6 6 6 3 Protein of unknown function (DUF1664) HAMP PF00672.25 gi|55377770|ref|YP_135620.1| - 0.0013 19.1 0.3 0.0013 19.1 0.3 4.4 5 0 0 5 5 3 1 HAMP domain LXG PF04740.12 gi|55377770|ref|YP_135620.1| - 0.0051 16.5 0.6 0.0051 16.5 0.6 5.0 2 1 1 4 4 4 2 LXG domain of WXG superfamily NPV_P10 PF05531.12 gi|55377770|ref|YP_135620.1| - 0.0062 17.0 26.3 0.09 13.2 1.0 6.1 3 2 3 6 6 6 1 Nucleopolyhedrovirus P10 protein ANAPC4 PF12896.7 gi|55377770|ref|YP_135620.1| - 0.029 13.9 8.2 0.97 8.9 0.2 3.8 3 1 1 4 4 4 0 Anaphase-promoting complex, cyclosome, subunit 4 DUF3584 PF12128.8 gi|55377770|ref|YP_135620.1| - 0.082 10.4 49.5 0.1 10.1 17.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Mce4_CUP1 PF11887.8 gi|55377770|ref|YP_135620.1| - 0.11 11.9 15.4 0.32 10.4 4.2 3.0 2 1 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative TRAF_BIRC3_bd PF16673.5 gi|55377770|ref|YP_135620.1| - 0.12 12.2 0.3 0.12 12.2 0.3 3.9 4 1 0 4 4 3 0 TNF receptor-associated factor BIRC3 binding domain Spc7 PF08317.11 gi|55377770|ref|YP_135620.1| - 0.12 11.2 44.6 0.011 14.6 12.1 3.7 2 1 1 3 3 3 0 Spc7 kinetochore protein Med28 PF11594.8 gi|55377770|ref|YP_135620.1| - 0.15 12.1 12.1 0.13 12.4 1.5 3.5 2 1 0 3 3 3 0 Mediator complex subunit 28 DASH_Duo1 PF08651.10 gi|55377770|ref|YP_135620.1| - 0.28 11.0 20.1 7.4 6.4 0.9 6.7 4 3 2 7 7 7 0 DASH complex subunit Duo1 DUF2779 PF11074.8 gi|55377770|ref|YP_135620.1| - 0.38 11.2 2.8 11 6.6 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function(DUF2779) EzrA PF06160.12 gi|55377770|ref|YP_135620.1| - 0.49 8.5 38.7 0.0054 15.0 10.9 3.1 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA BLOC1_2 PF10046.9 gi|55377770|ref|YP_135620.1| - 0.54 10.6 38.9 0.19 12.0 1.7 6.5 3 3 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ING PF12998.7 gi|55377770|ref|YP_135620.1| - 0.76 10.4 18.6 3.3 8.3 1.1 5.4 2 2 3 5 5 5 0 Inhibitor of growth proteins N-terminal histone-binding DUF3450 PF11932.8 gi|55377770|ref|YP_135620.1| - 0.94 8.7 47.1 0.056 12.7 3.9 4.8 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) COX14 PF14880.6 gi|55377770|ref|YP_135620.1| - 1.2 9.0 4.2 6.5 6.7 4.2 2.2 1 1 0 1 1 1 0 Cytochrome oxidase c assembly GAS PF13851.6 gi|55377770|ref|YP_135620.1| - 1.7 8.0 28.3 1.5 8.1 6.1 3.5 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding Corona_S2 PF01601.16 gi|55377770|ref|YP_135620.1| - 2 6.8 8.0 0.28 9.6 0.4 2.5 1 1 2 3 3 3 0 Coronavirus S2 glycoprotein Sec34 PF04136.15 gi|55377770|ref|YP_135620.1| - 2.5 8.0 29.0 1.9 8.4 3.4 5.6 2 2 3 6 6 6 0 Sec34-like family ISG65-75 PF11727.8 gi|55377770|ref|YP_135620.1| - 3.1 6.9 48.3 0.23 10.6 7.0 4.4 2 1 2 4 4 4 0 Invariant surface glycoprotein YkyA PF10368.9 gi|55377770|ref|YP_135620.1| - 3.6 7.2 51.1 2.4 7.8 11.6 4.8 1 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Atg14 PF10186.9 gi|55377770|ref|YP_135620.1| - 4.9 6.1 29.0 5.2 6.0 4.4 3.6 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2203 PF09969.9 gi|55377770|ref|YP_135620.1| - 5.4 7.8 40.6 0.43 11.3 2.4 5.3 1 1 5 6 6 6 0 Uncharacterized conserved protein (DUF2203) KxDL PF10241.9 gi|55377770|ref|YP_135620.1| - 5.6 7.3 17.1 4.1 7.8 0.0 5.0 3 2 2 5 5 5 0 Uncharacterized conserved protein RecG_N PF17190.4 gi|55377770|ref|YP_135620.1| - 6.3 7.6 9.1 19 6.1 0.1 3.9 4 1 0 4 4 3 0 RecG N-terminal helical domain Prominin PF05478.11 gi|55377770|ref|YP_135620.1| - 7.5 4.4 21.1 0.35 8.8 7.8 2.6 1 1 1 3 3 3 0 Prominin Cauli_AT PF03233.13 gi|55377770|ref|YP_135620.1| - 8.5 6.3 17.6 0.54 10.2 0.2 3.6 2 1 1 4 4 3 0 Aphid transmission protein MFS_1 PF07690.16 gi|55377772|ref|YP_135622.1| - 3.5e-27 95.3 61.7 7.1e-21 74.5 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3491 PF11996.8 gi|55377773|ref|YP_135623.1| - 0.0017 16.3 0.0 0.0021 16.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3491) DUF3693 PF12472.8 gi|55377773|ref|YP_135623.1| - 0.3 10.8 2.4 1 9.1 0.1 2.2 1 1 1 2 2 2 0 Phage related protein DUF4129 PF13559.6 gi|55377775|ref|YP_135625.1| - 4.4e-07 30.1 3.4 4.4e-07 30.1 3.4 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4198 PF10670.9 gi|55377775|ref|YP_135625.1| - 0.071 13.5 2.5 4 7.8 0.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4198) DUF58 PF01882.18 gi|55377777|ref|YP_135627.1| - 3.4e-18 65.7 0.4 9.3e-18 64.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|55377777|ref|YP_135627.1| - 1.2e-10 41.5 0.8 1.2e-10 41.5 0.8 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.14 gi|55377777|ref|YP_135627.1| - 7.7e-06 25.4 0.0 1.9e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|55377777|ref|YP_135627.1| - 1.7e-05 24.9 0.1 1.7e-05 24.9 0.1 2.2 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|55377777|ref|YP_135627.1| - 0.0011 19.2 0.0 0.0027 17.9 0.0 1.6 1 0 0 1 1 1 1 CARDB MycE_N PF17843.1 gi|55377777|ref|YP_135627.1| - 0.023 15.2 0.1 0.071 13.6 0.1 1.8 1 0 0 1 1 1 0 MycE methyltransferase N-terminal AAA_3 PF07726.11 gi|55377779|ref|YP_135629.1| - 4.9e-65 217.3 0.1 8e-65 216.6 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|55377779|ref|YP_135629.1| - 4.2e-16 59.2 0.0 1.2e-15 57.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|55377779|ref|YP_135629.1| - 2.3e-13 49.8 2.2 4.9e-13 48.7 2.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|55377779|ref|YP_135629.1| - 2.6e-07 31.1 0.0 8.1e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|55377779|ref|YP_135629.1| - 2.2e-05 23.7 0.0 3.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|55377779|ref|YP_135629.1| - 3.6e-05 23.5 0.0 0.00061 19.5 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55377779|ref|YP_135629.1| - 0.00011 21.9 0.0 0.0016 18.2 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|55377779|ref|YP_135629.1| - 0.019 14.4 0.0 6.5 6.1 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|55377779|ref|YP_135629.1| - 0.028 15.0 0.0 0.055 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FGase PF05013.12 gi|55377779|ref|YP_135629.1| - 0.049 13.8 1.1 0.092 12.9 1.1 1.4 1 0 0 1 1 1 0 N-formylglutamate amidohydrolase AAA_16 PF13191.6 gi|55377779|ref|YP_135629.1| - 0.11 12.9 0.2 0.22 11.9 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_2 PF07724.14 gi|55377779|ref|YP_135629.1| - 0.13 12.4 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF2237 PF09996.9 gi|55377780|ref|YP_135630.1| - 1.3e-49 166.9 0.0 1.5e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) AAA_12 PF13087.6 gi|55377781|ref|YP_135631.1| - 1.9e-41 141.9 0.0 2.8e-41 141.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|55377781|ref|YP_135631.1| - 3.1e-38 132.1 1.8 8.2e-19 68.4 0.9 2.6 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|55377781|ref|YP_135631.1| - 8e-20 71.4 2.7 8e-20 71.4 2.7 2.5 3 1 0 3 3 3 1 AAA domain Dna2 PF08696.11 gi|55377781|ref|YP_135631.1| - 6.3e-17 62.1 0.0 3.3e-15 56.5 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_19 PF13245.6 gi|55377781|ref|YP_135631.1| - 3.8e-14 53.3 0.9 2.5e-13 50.6 0.3 2.5 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|55377781|ref|YP_135631.1| - 1.1e-11 45.2 0.0 2.6e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|55377781|ref|YP_135631.1| - 1.6e-08 34.6 0.1 0.029 14.1 0.1 3.6 4 0 0 4 4 4 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|55377781|ref|YP_135631.1| - 4.1e-07 29.8 0.0 6.2e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.9 gi|55377781|ref|YP_135631.1| - 5.4e-05 22.6 0.3 0.00022 20.6 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.6 gi|55377781|ref|YP_135631.1| - 9.6e-05 22.1 0.1 0.00047 19.9 0.0 2.3 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain Helicase_RecD PF05127.14 gi|55377781|ref|YP_135631.1| - 0.00018 21.5 0.0 0.00041 20.3 0.0 1.6 1 0 0 1 1 1 1 Helicase AAA_16 PF13191.6 gi|55377781|ref|YP_135631.1| - 0.00021 21.7 0.9 0.0011 19.4 0.9 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55377781|ref|YP_135631.1| - 0.00022 21.5 0.0 0.00072 19.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.14 gi|55377781|ref|YP_135631.1| - 0.0015 17.8 0.0 0.066 12.4 0.0 2.1 2 0 0 2 2 2 1 PIF1-like helicase ResIII PF04851.15 gi|55377781|ref|YP_135631.1| - 0.0048 16.9 0.0 0.0098 15.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SRP54 PF00448.22 gi|55377781|ref|YP_135631.1| - 0.011 15.4 0.0 0.17 11.5 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|55377781|ref|YP_135631.1| - 0.012 15.2 0.0 0.045 13.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|55377781|ref|YP_135631.1| - 0.021 15.2 0.5 0.068 13.6 0.2 2.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|55377781|ref|YP_135631.1| - 0.021 14.8 0.0 0.29 11.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|55377781|ref|YP_135631.1| - 0.021 14.3 0.1 0.083 12.3 0.1 1.9 1 1 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|55377781|ref|YP_135631.1| - 0.023 14.4 0.0 0.072 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|55377781|ref|YP_135631.1| - 0.028 13.8 0.0 0.066 12.6 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TrwB_AAD_bind PF10412.9 gi|55377781|ref|YP_135631.1| - 0.037 12.9 0.0 0.062 12.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 gi|55377781|ref|YP_135631.1| - 0.046 13.9 0.0 0.16 12.1 0.0 2.0 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|55377781|ref|YP_135631.1| - 0.052 12.6 0.0 0.086 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|55377781|ref|YP_135631.1| - 0.068 13.2 0.1 0.3 11.1 0.0 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|55377781|ref|YP_135631.1| - 0.087 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein bPH_2 PF03703.14 gi|55377782|ref|YP_135632.1| - 1.7e-51 172.3 4.1 2e-18 66.3 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|55377782|ref|YP_135632.1| - 0.03 14.4 0.0 12 6.1 0.0 3.1 3 0 0 3 3 3 0 Bacterial PH domain bPH_2 PF03703.14 gi|55377783|ref|YP_135633.1| - 6e-16 58.4 0.2 1e-15 57.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF5061 PF16587.5 gi|55377784|ref|YP_135634.1| - 0.0083 16.2 0.3 0.017 15.2 0.3 1.7 1 1 0 1 1 1 1 17 kDa common-antigen outer membrane protein TAT_signal PF10518.9 gi|55377784|ref|YP_135634.1| - 0.047 13.5 4.6 0.088 12.7 4.6 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pro_CA PF00484.19 gi|55377785|ref|YP_135635.1| - 5.5e-14 52.8 0.0 8.4e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Carbonic anhydrase DEAD_assoc PF08494.11 gi|55377786|ref|YP_135636.1| - 3.1e-52 177.2 0.5 6.2e-52 176.2 0.5 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|55377786|ref|YP_135636.1| - 1e-31 110.0 0.0 6e-30 104.3 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|55377786|ref|YP_135636.1| - 2.6e-19 69.6 0.1 6.6e-18 65.1 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|55377786|ref|YP_135636.1| - 1.7e-10 41.1 0.0 1.3e-09 38.3 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|55377786|ref|YP_135636.1| - 0.0041 17.4 0.0 0.027 14.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|55377786|ref|YP_135636.1| - 0.005 17.2 0.0 0.014 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain DHDPS PF00701.22 gi|55377787|ref|YP_135637.1| - 1.8e-61 207.4 0.0 2e-61 207.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF348 PF03990.14 gi|55377787|ref|YP_135637.1| - 3.1 7.6 0.0 3.1 7.6 0.0 3.2 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain HTH_20 PF12840.7 gi|55377788|ref|YP_135638.1| - 6.1e-13 48.6 0.1 1.1e-12 47.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|55377788|ref|YP_135638.1| - 5.2e-09 35.5 0.0 9e-09 34.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55377788|ref|YP_135638.1| - 1e-07 31.7 0.0 1.7e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55377788|ref|YP_135638.1| - 5.7e-07 29.3 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55377788|ref|YP_135638.1| - 0.00044 20.1 0.0 0.00077 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|55377788|ref|YP_135638.1| - 0.0028 18.1 0.0 0.012 16.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|55377788|ref|YP_135638.1| - 0.0035 17.3 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_42 PF06224.12 gi|55377788|ref|YP_135638.1| - 0.0044 16.6 0.4 0.0081 15.7 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|55377788|ref|YP_135638.1| - 0.01 15.3 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_45 PF14947.6 gi|55377788|ref|YP_135638.1| - 0.028 14.4 0.0 0.045 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|55377788|ref|YP_135638.1| - 0.045 14.0 0.0 0.077 13.3 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) TrmB PF01978.19 gi|55377788|ref|YP_135638.1| - 0.051 13.5 0.1 0.1 12.5 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r3 PF04539.16 gi|55377788|ref|YP_135638.1| - 0.051 13.7 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 ComX PF05952.12 gi|55377788|ref|YP_135638.1| - 0.092 12.7 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 Bacillus competence pheromone ComX BLACT_WH PF17778.1 gi|55377788|ref|YP_135638.1| - 0.12 12.4 0.3 0.44 10.6 0.3 1.9 1 1 0 1 1 1 0 Beta-lactamase associated winged helix domain Methyltransf_25 PF13649.6 gi|55377789|ref|YP_135639.1| - 1e-16 61.4 0.1 2.1e-16 60.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55377789|ref|YP_135639.1| - 1.5e-15 57.3 0.0 1.8e-15 57.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|55377789|ref|YP_135639.1| - 1.1e-12 48.4 0.2 3.4e-12 46.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55377789|ref|YP_135639.1| - 6.5e-11 42.9 0.0 1.2e-10 42.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55377789|ref|YP_135639.1| - 6.6e-09 35.4 0.1 1.1e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|55377789|ref|YP_135639.1| - 7e-07 29.2 0.0 1.2e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|55377789|ref|YP_135639.1| - 7.7e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|55377789|ref|YP_135639.1| - 0.00076 19.0 0.1 0.001 18.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|55377789|ref|YP_135639.1| - 0.0032 16.8 0.0 0.0041 16.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|55377789|ref|YP_135639.1| - 0.0048 16.9 0.0 0.0066 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|55377789|ref|YP_135639.1| - 0.006 16.5 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|55377789|ref|YP_135639.1| - 0.054 13.0 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.19 gi|55377789|ref|YP_135639.1| - 0.088 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|55377789|ref|YP_135639.1| - 0.13 11.3 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase RrnaAD PF00398.20 gi|55377789|ref|YP_135639.1| - 0.17 11.0 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|55377789|ref|YP_135639.1| - 0.17 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Lactamase_B_2 PF12706.7 gi|55377790|ref|YP_135640.1| - 1.7e-16 60.4 1.9 2.3e-16 59.9 1.9 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|55377790|ref|YP_135640.1| - 3.8e-13 49.9 0.3 7.3e-13 49.0 0.3 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|55377790|ref|YP_135640.1| - 0.00074 19.4 0.1 0.0012 18.8 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|55377790|ref|YP_135640.1| - 0.005 16.3 0.1 0.0076 15.7 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain PDEase_II PF02112.15 gi|55377790|ref|YP_135640.1| - 0.2 10.8 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II GAF_3 PF13492.6 gi|55377791|ref|YP_135641.1| - 6.3e-14 52.4 0.3 1.3e-13 51.5 0.3 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|55377791|ref|YP_135641.1| - 1.9e-13 50.9 0.1 3.7e-13 50.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|55377791|ref|YP_135641.1| - 4.9e-05 23.6 0.5 0.00016 22.0 0.5 1.9 1 1 0 1 1 1 1 GAF domain HisKA_4TM PF16926.5 gi|55377791|ref|YP_135641.1| - 0.00031 20.3 0.2 0.00055 19.6 0.2 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|55377791|ref|YP_135641.1| - 0.00037 20.1 0.0 0.0014 18.3 0.0 1.9 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|55377791|ref|YP_135641.1| - 0.00044 20.2 0.3 0.0066 16.5 0.0 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|55377791|ref|YP_135641.1| - 0.0039 17.1 0.0 0.0095 15.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain YnfE PF17452.2 gi|55377791|ref|YP_135641.1| - 0.04 14.2 1.3 0.22 11.8 0.1 2.6 2 1 0 2 2 2 0 Uncharacterized YnfE-like TPR_7 PF13176.6 gi|55377791|ref|YP_135641.1| - 0.13 12.3 0.6 0.47 10.6 0.4 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat Syntaxin_2 PF14523.6 gi|55377791|ref|YP_135641.1| - 0.14 12.5 0.0 0.37 11.2 0.0 1.7 2 0 0 2 2 2 0 Syntaxin-like protein eRF1_1 PF03463.15 gi|55377792|ref|YP_135642.1| - 2.2e-26 92.3 0.1 3.6e-26 91.7 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|55377792|ref|YP_135642.1| - 7.3e-21 74.8 1.5 1.8e-20 73.5 0.0 2.3 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|55377792|ref|YP_135642.1| - 1.7e-08 34.9 0.2 9.9e-07 29.1 0.2 2.4 1 1 0 1 1 1 1 eRF1 domain 2 DUF4013 PF13197.6 gi|55377793|ref|YP_135643.1| - 4e-35 121.1 17.2 4e-35 121.1 17.2 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) RELT PF12606.8 gi|55377793|ref|YP_135643.1| - 1.7 7.7 4.5 4.2 6.4 4.5 1.7 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 AIRS_C PF02769.22 gi|55377794|ref|YP_135644.1| - 6.7e-26 91.3 2.2 8.9e-26 90.9 1.6 1.4 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|55377794|ref|YP_135644.1| - 1.1e-09 38.8 0.3 3.3e-09 37.3 0.3 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1513 PF07433.11 gi|55377794|ref|YP_135644.1| - 0.027 13.5 1.5 1.7 7.6 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1513) MtrH PF02007.18 gi|55377794|ref|YP_135644.1| - 0.065 12.3 0.4 0.12 11.5 0.4 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase MtrH subunit FbpA PF05833.11 gi|55377795|ref|YP_135645.1| - 1.4e-79 268.0 0.0 2.1e-79 267.4 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|55377795|ref|YP_135645.1| - 1.2e-23 83.9 0.0 1.9e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|55377795|ref|YP_135645.1| - 0.00027 21.1 0.0 0.00083 19.5 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain CENP-Q PF13094.6 gi|55377795|ref|YP_135645.1| - 8 6.6 10.3 0.48 10.6 0.6 2.4 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Amino_oxidase PF01593.24 gi|55377796|ref|YP_135646.1| - 4.3e-17 62.6 1.2 1.3e-08 34.6 0.1 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|55377796|ref|YP_135646.1| - 5.1e-16 58.7 0.9 1.1e-15 57.5 0.9 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55377796|ref|YP_135646.1| - 1.5e-05 24.7 5.2 2.5e-05 24.0 4.6 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55377796|ref|YP_135646.1| - 0.00087 18.6 2.0 0.0015 17.8 0.9 1.7 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55377796|ref|YP_135646.1| - 0.0016 17.6 7.0 0.0016 17.6 3.7 2.4 2 1 1 3 3 3 1 FAD binding domain NAD_binding_9 PF13454.6 gi|55377796|ref|YP_135646.1| - 0.005 16.8 1.8 0.72 9.8 0.1 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|55377796|ref|YP_135646.1| - 0.0082 15.4 0.4 0.012 14.8 0.4 1.2 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|55377796|ref|YP_135646.1| - 0.0082 14.9 0.5 0.013 14.2 0.5 1.3 1 0 0 1 1 1 1 HI0933-like protein IlvN PF07991.12 gi|55377796|ref|YP_135646.1| - 0.0095 15.5 0.1 0.014 15.0 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|55377796|ref|YP_135646.1| - 0.01 15.5 0.1 0.78 9.4 0.3 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|55377796|ref|YP_135646.1| - 0.012 16.1 0.4 0.028 15.0 0.4 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55377796|ref|YP_135646.1| - 0.022 13.8 1.6 0.038 13.1 1.6 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|55377796|ref|YP_135646.1| - 0.05 12.9 0.2 0.085 12.1 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|55377796|ref|YP_135646.1| - 0.057 12.6 0.2 0.093 12.0 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|55377796|ref|YP_135646.1| - 0.1 12.5 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CARDB PF07705.11 gi|55377797|ref|YP_135647.1| - 5e-35 119.8 83.7 4.9e-07 29.9 3.8 11.5 7 3 4 12 12 12 9 CARDB LBP_BPI_CETP PF01273.25 gi|55377797|ref|YP_135647.1| - 0.001 18.7 2.0 6.7 6.3 0.1 4.9 5 0 0 5 5 5 1 LBP / BPI / CETP family, N-terminal domain A2M PF00207.22 gi|55377797|ref|YP_135647.1| - 0.021 14.7 5.7 74 3.3 0.0 6.0 6 0 0 6 6 6 0 Alpha-2-macroglobulin family DUF3237 PF11578.8 gi|55377797|ref|YP_135647.1| - 0.04 13.7 9.4 0.38 10.6 1.1 4.1 3 2 0 3 3 3 0 Protein of unknown function (DUF3237) DUF3416 PF11896.8 gi|55377797|ref|YP_135647.1| - 0.16 12.2 2.6 36 4.6 0.1 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF3416) Fn3-like PF14310.6 gi|55377797|ref|YP_135647.1| - 0.22 11.7 11.4 7.6 6.7 0.0 7.1 8 0 0 8 8 8 0 Fibronectin type III-like domain fn3_6 PF17766.1 gi|55377797|ref|YP_135647.1| - 0.88 9.8 27.0 1.6 9.0 0.4 8.2 4 3 2 6 6 6 0 Fibronectin type-III domain BsuPI PF12690.7 gi|55377797|ref|YP_135647.1| - 1.2 9.3 21.6 2.4 8.2 0.3 8.3 10 1 1 11 11 11 0 Intracellular proteinase inhibitor S4 PF01479.25 gi|55377797|ref|YP_135647.1| - 1.4 8.7 3.0 79 3.1 0.0 4.2 5 0 0 5 5 5 0 S4 domain Cupredoxin_1 PF13473.6 gi|55377797|ref|YP_135647.1| - 3.2 7.9 11.5 37 4.5 0.0 6.3 5 3 1 7 7 7 0 Cupredoxin-like domain DDE_Tnp_IS1595 PF12762.7 gi|55377798|ref|YP_135648.1| - 5.9e-22 78.3 0.0 9.1e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|55377798|ref|YP_135648.1| - 1.6e-10 40.8 1.4 4.2e-10 39.4 1.4 1.8 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|55377798|ref|YP_135648.1| - 2.3e-05 24.0 5.4 2.3e-05 24.0 5.4 1.8 2 0 0 2 2 2 1 InsA N-terminal domain zf-Dof PF02701.15 gi|55377798|ref|YP_135648.1| - 0.03 14.5 3.4 0.064 13.4 3.4 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.10 gi|55377798|ref|YP_135648.1| - 0.056 13.6 1.0 15 5.8 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|55377798|ref|YP_135648.1| - 0.65 10.7 8.4 1.8 9.3 1.0 3.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|55377798|ref|YP_135648.1| - 1.6 8.7 4.0 6.9 6.7 4.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Radical_SAM PF04055.21 gi|55377799|ref|YP_135649.1| - 1.8e-26 93.5 0.1 9.6e-26 91.1 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|55377799|ref|YP_135649.1| - 3.5e-24 84.6 0.0 6.3e-24 83.8 0.0 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|55377799|ref|YP_135649.1| - 1.6e-09 38.0 0.1 3.3e-09 37.0 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55377799|ref|YP_135649.1| - 0.0004 20.3 0.2 0.0013 18.7 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55377799|ref|YP_135649.1| - 0.018 15.4 0.1 0.037 14.5 0.1 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MCPsignal PF00015.21 gi|55377801|ref|YP_135651.1| - 2.6e-38 131.5 29.4 2.6e-38 131.5 29.4 4.5 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain MAP17 PF15807.5 gi|55377801|ref|YP_135651.1| - 0.00026 21.2 3.0 0.00026 21.2 3.0 3.5 3 2 1 4 4 4 1 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 DUF812 PF05667.11 gi|55377801|ref|YP_135651.1| - 0.0059 15.6 4.6 0.0059 15.6 4.6 3.3 2 1 0 3 3 3 1 Protein of unknown function (DUF812) Dynamin_M PF01031.20 gi|55377801|ref|YP_135651.1| - 0.0085 15.3 13.6 0.013 14.7 5.5 2.4 2 0 0 2 2 2 2 Dynamin central region HAMP PF00672.25 gi|55377801|ref|YP_135651.1| - 0.011 16.2 0.4 0.011 16.2 0.4 4.2 4 0 0 4 4 4 0 HAMP domain DUF948 PF06103.11 gi|55377801|ref|YP_135651.1| - 0.07 13.4 51.3 0.088 13.1 7.7 6.8 4 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) SnoaL_2 PF12680.7 gi|55377801|ref|YP_135651.1| - 0.07 13.8 0.4 0.07 13.8 0.4 3.6 2 2 2 4 4 4 0 SnoaL-like domain Syntaxin-6_N PF09177.11 gi|55377801|ref|YP_135651.1| - 6.1 7.5 44.3 13 6.4 1.8 5.4 2 2 1 4 4 4 0 Syntaxin 6, N-terminal SCO1-SenC PF02630.14 gi|55377801|ref|YP_135651.1| - 6.2 6.7 17.2 2 8.4 1.3 4.3 2 2 2 4 4 4 0 SCO1/SenC Cupin_2 PF07883.11 gi|55377802|ref|YP_135652.1| - 7.7e-12 44.8 0.2 1.2e-11 44.2 0.2 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|55377802|ref|YP_135652.1| - 0.0036 17.0 0.0 0.0073 16.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DUF4437 PF14499.6 gi|55377802|ref|YP_135652.1| - 0.04 13.0 0.0 0.055 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) tRNA_anti-codon PF01336.25 gi|55377803|ref|YP_135653.1| - 1.5e-10 40.9 0.1 4.1e-10 39.5 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|55377803|ref|YP_135653.1| - 3.6e-07 30.4 0.3 1.8e-06 28.2 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|55377803|ref|YP_135653.1| - 0.00049 20.2 0.0 0.0015 18.7 0.0 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF1195 PF06708.11 gi|55377803|ref|YP_135653.1| - 0.11 12.3 0.2 0.34 10.7 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1195) Apt1 PF10351.9 gi|55377803|ref|YP_135653.1| - 0.8 8.5 3.4 1.1 8.0 3.4 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain RecJ_OB PF17768.1 gi|55377804|ref|YP_135654.1| - 0.022 15.0 0.0 0.024 14.9 0.0 1.1 1 0 0 1 1 1 0 RecJ OB domain Yip1 PF04893.17 gi|55377805|ref|YP_135655.1| - 0.00039 20.2 6.5 0.00051 19.8 6.5 1.1 1 0 0 1 1 1 1 Yip1 domain FMN_red PF03358.15 gi|55377806|ref|YP_135656.1| - 5.4e-34 117.2 0.0 6.7e-34 116.9 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|55377806|ref|YP_135656.1| - 1.4e-07 31.5 0.0 2.1e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold B12-binding PF02310.19 gi|55377808|ref|YP_135658.1| - 1.5e-16 60.5 0.2 2e-16 60.1 0.2 1.2 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|55377808|ref|YP_135658.1| - 0.00095 19.2 0.0 0.013 15.5 0.0 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase ACT PF01842.25 gi|55377808|ref|YP_135658.1| - 0.23 11.2 1.3 5.7 6.8 0.1 2.5 2 1 0 2 2 2 0 ACT domain Acetyltransf_1 PF00583.25 gi|55377809|ref|YP_135659.1| - 8.8e-15 55.0 0.0 1.1e-14 54.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55377809|ref|YP_135659.1| - 4.5e-14 52.5 0.0 6.8e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55377809|ref|YP_135659.1| - 3.5e-12 46.6 0.0 4.9e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55377809|ref|YP_135659.1| - 1.2e-07 32.0 0.0 2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55377809|ref|YP_135659.1| - 1.4e-07 31.4 0.0 2.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|55377809|ref|YP_135659.1| - 1.2e-05 26.0 0.0 1.5e-05 25.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|55377809|ref|YP_135659.1| - 0.0028 17.8 1.3 0.005 17.0 0.9 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55377809|ref|YP_135659.1| - 0.016 15.2 0.1 0.091 12.8 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Na_Ca_ex PF01699.24 gi|55377810|ref|YP_135660.1| - 6.7e-35 120.3 29.8 6e-18 65.2 12.1 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein HhH-GPD PF00730.25 gi|55377811|ref|YP_135661.1| - 5.7e-16 58.9 0.0 9.7e-16 58.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|55377811|ref|YP_135661.1| - 4.9e-06 26.1 0.0 9.8e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Mso1_Sec1_bdg PF14475.6 gi|55377811|ref|YP_135661.1| - 0.064 12.9 0.3 0.42 10.2 0.1 2.2 2 0 0 2 2 2 0 Sec1-binding region of Mso1 HATPase_c PF02518.26 gi|55377812|ref|YP_135662.1| - 3.4e-15 56.5 0.0 7.2e-15 55.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55377812|ref|YP_135662.1| - 4.5e-14 52.2 0.9 3.4e-13 49.4 0.6 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 gi|55377812|ref|YP_135662.1| - 4.9e-12 46.0 2.0 5.9e-12 45.8 0.5 2.0 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 gi|55377812|ref|YP_135662.1| - 0.0026 17.6 0.0 0.0072 16.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Exonuc_VII_L PF02601.15 gi|55377812|ref|YP_135662.1| - 0.0049 16.5 0.7 0.0078 15.8 0.7 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit Metal_resist PF13801.6 gi|55377812|ref|YP_135662.1| - 0.01 16.0 7.4 0.47 10.6 2.9 2.8 1 1 0 2 2 2 0 Heavy-metal resistance CEP209_CC5 PF16574.5 gi|55377812|ref|YP_135662.1| - 0.01 16.0 0.3 0.02 15.0 0.3 1.4 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 GAS PF13851.6 gi|55377812|ref|YP_135662.1| - 0.058 12.7 1.1 0.22 10.8 1.1 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|55377812|ref|YP_135662.1| - 0.073 11.9 1.3 0.11 11.3 1.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Staph_haemo PF05480.11 gi|55377812|ref|YP_135662.1| - 0.088 12.6 0.1 0.29 11.0 0.0 1.9 2 0 0 2 2 2 0 Staphylococcus haemolytic protein Prominin PF05478.11 gi|55377812|ref|YP_135662.1| - 0.21 9.5 0.0 0.32 8.9 0.0 1.3 1 0 0 1 1 1 0 Prominin STAG PF08514.11 gi|55377812|ref|YP_135662.1| - 0.57 10.1 2.9 0.69 9.9 0.3 2.2 2 0 0 2 2 2 0 STAG domain Hemerythrin PF01814.23 gi|55377812|ref|YP_135662.1| - 1.6 9.4 6.1 6.9 7.3 6.1 2.1 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF4010 PF13194.6 gi|55377814|ref|YP_135664.1| - 1.9e-51 174.8 27.4 1.9e-51 174.8 27.4 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|55377814|ref|YP_135664.1| - 6.3e-24 84.7 10.7 6.3e-24 84.7 10.7 4.1 2 1 0 2 2 2 1 MgtC family HisKA_7TM PF16927.5 gi|55377815|ref|YP_135665.1| - 7.3e-40 137.3 9.3 9.1e-40 137.0 9.3 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS PF00989.25 gi|55377815|ref|YP_135665.1| - 1.3e-20 73.4 0.1 4.3e-12 46.0 0.0 3.5 3 1 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|55377815|ref|YP_135665.1| - 8.1e-20 71.1 1.0 9.8e-09 35.4 0.1 3.0 2 1 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|55377815|ref|YP_135665.1| - 5.7e-19 68.7 0.1 1e-18 67.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|55377815|ref|YP_135665.1| - 6.3e-14 52.0 0.0 2.2e-13 50.3 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|55377815|ref|YP_135665.1| - 1e-11 45.0 0.1 0.00031 20.9 0.0 3.6 3 1 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|55377815|ref|YP_135665.1| - 2.1e-11 43.7 0.6 5.8e-11 42.3 0.6 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|55377815|ref|YP_135665.1| - 3.7e-11 42.8 0.2 0.00063 19.7 0.0 3.2 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.6 gi|55377815|ref|YP_135665.1| - 0.0023 18.1 0.0 0.0042 17.2 0.0 1.4 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|55377815|ref|YP_135665.1| - 0.016 15.2 0.1 0.034 14.1 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|55377815|ref|YP_135665.1| - 0.087 13.0 0.2 6.1 7.1 0.1 3.1 2 1 0 2 2 2 0 PAS fold PAP2_3 PF14378.6 gi|55377815|ref|YP_135665.1| - 0.092 12.4 0.9 0.13 11.9 0.1 1.7 2 0 0 2 2 2 0 PAP2 superfamily HATPase_c_5 PF14501.6 gi|55377815|ref|YP_135665.1| - 0.19 11.6 0.0 0.37 10.7 0.0 1.4 1 0 0 1 1 1 0 GHKL domain PadR PF03551.14 gi|55377816|ref|YP_135666.1| - 6.2e-18 64.5 1.0 7.4e-18 64.3 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|55377816|ref|YP_135666.1| - 0.0022 17.8 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|55377816|ref|YP_135666.1| - 0.0083 16.1 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|55377816|ref|YP_135666.1| - 0.0091 15.9 0.1 1.7 8.6 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|55377816|ref|YP_135666.1| - 0.014 15.9 0.2 0.018 15.5 0.2 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|55377816|ref|YP_135666.1| - 0.11 12.7 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|55377816|ref|YP_135666.1| - 0.17 11.6 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HypA PF01155.19 gi|55377817|ref|YP_135667.1| - 0.0037 17.3 0.6 0.0069 16.4 0.6 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|55377817|ref|YP_135667.1| - 0.0081 16.2 0.3 0.016 15.2 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|55377817|ref|YP_135667.1| - 0.049 13.8 0.9 0.13 12.4 0.9 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.11 gi|55377817|ref|YP_135667.1| - 0.052 13.6 0.5 0.18 11.8 0.5 1.9 2 0 0 2 2 2 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 gi|55377817|ref|YP_135667.1| - 0.056 13.0 1.8 0.12 11.9 1.6 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding ArfGap PF01412.18 gi|55377817|ref|YP_135667.1| - 0.079 13.0 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf zf-IS66 PF13005.7 gi|55377817|ref|YP_135667.1| - 0.086 13.3 2.1 1.3 9.5 0.2 2.7 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.10 gi|55377817|ref|YP_135667.1| - 0.12 12.2 0.8 7.2 6.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|55377817|ref|YP_135667.1| - 0.23 11.3 0.6 9.7 6.0 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|55377817|ref|YP_135667.1| - 0.23 11.1 0.1 0.23 11.1 0.1 2.2 3 0 0 3 3 3 0 GATA zinc finger zf-HYPF PF07503.12 gi|55377817|ref|YP_135667.1| - 1.2 9.0 5.9 3.7 7.4 3.9 2.7 2 1 0 2 2 2 0 HypF finger TFIIS_C PF01096.18 gi|55377817|ref|YP_135667.1| - 2.6 8.0 5.4 16 5.5 1.7 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|55377817|ref|YP_135667.1| - 3.7 7.7 6.8 5.2 7.2 0.2 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 NUDIX PF00293.28 gi|55377818|ref|YP_135668.1| - 8.8e-13 48.4 0.3 1.1e-12 48.1 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain KH_1 PF00013.29 gi|55377818|ref|YP_135668.1| - 0.15 11.9 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 KH domain THF_DHG_CYH_C PF02882.19 gi|55377819|ref|YP_135669.1| - 4.1e-67 224.5 1.5 5.7e-67 224.0 1.5 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|55377819|ref|YP_135669.1| - 3.5e-37 127.2 0.9 5.9e-37 126.5 0.9 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BNIP2 PF12496.8 gi|55377819|ref|YP_135669.1| - 0.15 12.5 2.9 0.33 11.4 2.2 1.8 2 0 0 2 2 2 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 SHMT PF00464.19 gi|55377821|ref|YP_135671.1| - 4.5e-152 506.3 0.0 5.3e-152 506.0 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|55377821|ref|YP_135671.1| - 6.7e-07 28.8 0.0 1.2e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|55377821|ref|YP_135671.1| - 8.2e-05 22.0 0.0 0.014 14.7 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase DUF348 PF03990.14 gi|55377821|ref|YP_135671.1| - 0.095 12.5 0.3 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain CHAT PF12770.7 gi|55377822|ref|YP_135672.1| - 0.021 14.2 0.1 0.096 12.1 0.1 1.9 1 1 0 1 1 1 0 CHAT domain T6SS_VasE PF05936.12 gi|55377823|ref|YP_135673.1| - 0.0053 15.5 0.1 0.037 12.7 0.0 1.9 2 0 0 2 2 2 2 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YcaO PF02624.16 gi|55377824|ref|YP_135674.1| - 2.3e-49 168.4 6.6 3.1e-49 168.0 6.6 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF63 PF01889.17 gi|55377825|ref|YP_135675.1| - 4.9e-36 125.3 12.7 8e-36 124.6 10.7 2.1 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 MIG-14_Wnt-bd PF06664.12 gi|55377825|ref|YP_135675.1| - 1.9 7.7 6.4 2.8 7.1 1.8 2.2 1 1 0 2 2 2 0 Wnt-binding factor required for Wnt secretion Inositol_P PF00459.25 gi|55377826|ref|YP_135676.1| - 2.5e-48 165.0 0.2 2.8e-48 164.8 0.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family BMFP PF04380.13 gi|55377826|ref|YP_135676.1| - 0.24 11.9 1.0 0.61 10.6 1.0 1.7 1 1 0 1 1 1 0 Membrane fusogenic activity DUF5446 PF17522.2 gi|55377827|ref|YP_135677.1| - 0.0049 17.0 0.2 0.0061 16.7 0.2 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5446) GDP_Man_Dehyd PF16363.5 gi|55377831|ref|YP_135681.1| - 2.1e-69 234.5 0.2 3.3e-69 233.8 0.2 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|55377831|ref|YP_135681.1| - 7.5e-49 166.4 0.1 9.7e-49 166.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|55377831|ref|YP_135681.1| - 3.8e-14 52.3 0.0 5.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|55377831|ref|YP_135681.1| - 1e-13 51.1 0.0 6.3e-09 35.4 0.0 2.5 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|55377831|ref|YP_135681.1| - 2.3e-11 43.4 0.1 2.4e-10 40.1 0.1 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|55377831|ref|YP_135681.1| - 3.6e-07 30.2 0.1 5.4e-07 29.7 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|55377831|ref|YP_135681.1| - 6e-07 29.1 0.0 4.8e-05 22.9 0.0 2.4 2 1 0 2 2 2 1 short chain dehydrogenase RmlD_sub_bind PF04321.17 gi|55377831|ref|YP_135681.1| - 3.8e-05 22.9 0.0 0.0026 16.9 0.0 2.4 3 0 0 3 3 3 1 RmlD substrate binding domain NmrA PF05368.13 gi|55377831|ref|YP_135681.1| - 0.00022 20.9 0.1 0.00031 20.4 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|55377831|ref|YP_135681.1| - 0.0041 17.0 0.0 0.0075 16.2 0.0 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55377832|ref|YP_135682.1| - 1.3e-58 198.3 0.0 1.6e-58 198.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55377832|ref|YP_135682.1| - 8.3e-32 110.9 0.0 4.3e-28 98.7 0.0 2.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|55377832|ref|YP_135682.1| - 4.3e-07 29.3 0.0 1.4e-06 27.6 0.0 1.8 2 0 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|55377832|ref|YP_135682.1| - 3.8e-06 26.3 0.0 0.043 13.0 0.0 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|55377832|ref|YP_135682.1| - 5.5e-06 25.6 0.0 0.041 12.9 0.1 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|55377832|ref|YP_135682.1| - 0.00026 20.3 0.0 0.0039 16.4 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|55377832|ref|YP_135682.1| - 0.0018 18.2 0.0 0.037 13.9 0.0 2.2 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|55377832|ref|YP_135682.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 KR domain Glyco_transf_5 PF08323.11 gi|55377832|ref|YP_135682.1| - 0.17 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Starch synthase catalytic domain Polysacc_synt_3 PF13440.6 gi|55377834|ref|YP_135684.1| - 5e-21 75.2 18.1 5e-21 75.2 18.1 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|55377834|ref|YP_135684.1| - 4.1e-20 72.3 13.2 4.1e-20 72.3 13.2 3.9 3 1 2 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|55377834|ref|YP_135684.1| - 5.8e-13 48.8 29.3 5.8e-13 48.8 29.3 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Glycos_transf_1 PF00534.20 gi|55377836|ref|YP_135686.1| - 4.5e-24 84.9 0.0 6.6e-24 84.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55377836|ref|YP_135686.1| - 7.8e-19 68.4 0.0 1.4e-18 67.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|55377836|ref|YP_135686.1| - 4e-09 36.7 0.0 8.6e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|55377836|ref|YP_135686.1| - 3.9e-08 33.9 0.0 6.5e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|55377836|ref|YP_135686.1| - 4.9e-05 23.6 0.0 0.00012 22.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|55377836|ref|YP_135686.1| - 0.19 11.7 0.0 0.34 10.9 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.20 gi|55377838|ref|YP_135688.1| - 1.1e-37 129.3 0.0 2.6e-37 128.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55377838|ref|YP_135688.1| - 4.2e-34 117.9 0.0 1e-33 116.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|55377838|ref|YP_135688.1| - 3.1e-13 50.1 0.0 1.7e-12 47.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|55377838|ref|YP_135688.1| - 4e-11 43.2 0.0 1.1e-10 41.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|55377838|ref|YP_135688.1| - 4.3e-09 37.0 0.1 1.6e-07 31.9 0.0 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|55377838|ref|YP_135688.1| - 0.074 13.1 0.1 0.18 11.8 0.1 1.6 2 0 0 2 2 2 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|55377839|ref|YP_135689.1| - 7.6e-21 74.6 2.9 1e-20 74.2 2.9 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377839|ref|YP_135689.1| - 6.5e-13 49.1 0.1 9e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|55377839|ref|YP_135689.1| - 6.9e-07 29.0 7.5 2.7e-05 23.8 0.4 2.8 1 1 2 3 3 3 2 Glycosyltransferase like family 2 Saccharop_dh_N PF04455.12 gi|55377839|ref|YP_135689.1| - 0.042 14.3 0.0 0.62 10.5 0.0 2.5 3 0 0 3 3 3 0 LOR/SDH bifunctional enzyme conserved region HlyD_D4 PF16572.5 gi|55377839|ref|YP_135689.1| - 0.049 13.5 0.1 0.089 12.7 0.1 1.4 1 0 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB Glyco_tranf_2_4 PF13704.6 gi|55377839|ref|YP_135689.1| - 0.15 12.5 1.9 0.9 10.1 1.9 2.0 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|55377840|ref|YP_135690.1| - 1.9e-23 83.1 0.0 2.5e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377840|ref|YP_135690.1| - 1e-06 28.8 0.0 1.4e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|55377840|ref|YP_135690.1| - 0.026 15.0 0.0 0.041 14.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Reprolysin_3 PF13582.6 gi|55377842|ref|YP_135692.1| - 0.017 15.7 0.4 0.06 13.9 0.4 2.0 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|55377842|ref|YP_135692.1| - 0.025 13.2 0.0 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_4 PF13583.6 gi|55377842|ref|YP_135692.1| - 0.03 14.0 1.7 0.058 13.0 1.7 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|55377842|ref|YP_135692.1| - 0.031 13.2 0.1 0.05 12.6 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Binary_toxB PF03495.14 gi|55377842|ref|YP_135692.1| - 0.52 10.5 4.7 8 6.7 0.6 2.8 1 1 2 3 3 3 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain PsbR PF04725.12 gi|55377842|ref|YP_135692.1| - 6.9 7.1 7.3 0.69 10.3 0.9 2.4 3 0 0 3 3 3 0 Photosystem II 10 kDa polypeptide PsbR DUF58 PF01882.18 gi|55377843|ref|YP_135693.1| - 5.1e-21 74.8 0.2 1.2e-20 73.6 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 PLDc_N PF13396.6 gi|55377844|ref|YP_135694.1| - 0.0048 16.8 0.6 0.0048 16.8 0.6 2.1 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal AAA_3 PF07726.11 gi|55377846|ref|YP_135696.1| - 1.4e-60 202.9 0.4 2.1e-60 202.3 0.4 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|55377846|ref|YP_135696.1| - 1.2e-20 73.1 0.8 2.2e-20 72.3 0.8 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|55377846|ref|YP_135696.1| - 8.5e-18 64.7 0.0 2.5e-17 63.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|55377846|ref|YP_135696.1| - 1.2e-08 34.3 0.0 2.8e-08 33.1 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|55377846|ref|YP_135696.1| - 9.2e-08 32.0 0.1 9.2e-07 28.7 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|55377846|ref|YP_135696.1| - 6.1e-06 25.8 0.2 0.097 12.0 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|55377846|ref|YP_135696.1| - 1.2e-05 25.1 0.2 7.8e-05 22.5 0.2 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|55377846|ref|YP_135696.1| - 7.4e-05 23.2 0.0 0.00022 21.7 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|55377846|ref|YP_135696.1| - 0.077 13.4 0.2 0.23 11.9 0.2 2.2 1 1 0 1 1 1 0 AAA ATPase domain Histone PF00125.24 gi|55377846|ref|YP_135696.1| - 0.099 13.0 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 FEZ PF07763.13 gi|55377846|ref|YP_135696.1| - 0.12 12.0 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 FEZ-like protein DUF4350 PF14258.6 gi|55377847|ref|YP_135697.1| - 7.1e-10 39.2 0.4 2.5e-09 37.4 0.4 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|55377847|ref|YP_135697.1| - 0.0069 15.9 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF3040 PF11239.8 gi|55377848|ref|YP_135698.1| - 0.34 11.2 7.6 0.62 10.4 2.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF2530 PF10745.9 gi|55377848|ref|YP_135698.1| - 1.4 9.2 7.6 0.31 11.3 1.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) FtsX PF02687.21 gi|55377849|ref|YP_135699.1| - 6.7e-09 36.1 3.2 6.7e-09 36.1 3.2 4.7 5 1 1 6 6 6 2 FtsX-like permease family CARDB PF07705.11 gi|55377849|ref|YP_135699.1| - 0.004 17.4 1.3 0.004 17.4 1.3 3.0 4 0 0 4 4 4 1 CARDB ABC_tran PF00005.27 gi|55377850|ref|YP_135700.1| - 2e-29 102.8 0.0 3e-29 102.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55377850|ref|YP_135700.1| - 0.00012 22.0 0.4 0.12 12.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55377850|ref|YP_135700.1| - 0.00056 19.4 0.1 0.012 15.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55377850|ref|YP_135700.1| - 0.00076 19.2 0.1 0.0013 18.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55377850|ref|YP_135700.1| - 0.0023 18.4 1.0 0.0045 17.4 1.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|55377850|ref|YP_135700.1| - 0.012 15.5 0.3 0.022 14.7 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase SbcCD_C PF13558.6 gi|55377850|ref|YP_135700.1| - 0.05 13.8 0.1 0.94 9.8 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TniB PF05621.11 gi|55377850|ref|YP_135700.1| - 0.059 12.8 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_30 PF13604.6 gi|55377850|ref|YP_135700.1| - 0.079 12.7 0.1 0.1 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain YfhO PF09586.10 gi|55377851|ref|YP_135701.1| - 0.00028 19.3 1.5 0.095 10.9 2.0 2.1 1 1 0 2 2 2 2 Bacterial membrane protein YfhO MG4 PF17789.1 gi|55377852|ref|YP_135702.1| - 1.5e-05 25.0 3.7 0.004 17.3 0.2 3.7 3 0 0 3 3 3 2 Macroglobulin domain MG4 DUF4129 PF13559.6 gi|55377852|ref|YP_135702.1| - 0.0023 18.2 2.6 0.0023 18.2 2.6 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Invasin_D3 PF09134.10 gi|55377852|ref|YP_135702.1| - 0.0086 16.4 3.5 0.0086 16.4 3.5 3.7 2 1 1 3 3 3 1 Invasin, domain 3 LPP PF04728.13 gi|55377852|ref|YP_135702.1| - 0.36 11.3 4.6 0.43 11.0 1.5 2.7 2 0 0 2 2 2 0 Lipoprotein leucine-zipper DUF1616 PF07760.11 gi|55377853|ref|YP_135703.1| - 2.4e-121 404.7 0.1 2.7e-121 404.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4870 PF09685.10 gi|55377853|ref|YP_135703.1| - 0.14 12.3 0.0 0.14 12.3 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4870) YdjM PF04307.14 gi|55377854|ref|YP_135704.1| - 1.8e-07 30.6 9.6 2.7e-07 30.1 9.6 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase A2L_zn_ribbon PF08792.10 gi|55377855|ref|YP_135705.1| - 6.3e-06 25.8 2.6 8.2e-06 25.4 2.6 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|55377855|ref|YP_135705.1| - 0.00099 19.0 0.8 0.0012 18.7 0.8 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|55377855|ref|YP_135705.1| - 0.0057 16.7 0.6 0.0095 15.9 0.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-HIT PF04438.16 gi|55377855|ref|YP_135705.1| - 0.0091 15.8 1.3 1.2 9.1 0.2 2.1 2 0 0 2 2 2 2 HIT zinc finger DNA_RNApol_7kD PF03604.13 gi|55377855|ref|YP_135705.1| - 0.016 14.9 1.8 0.026 14.2 1.8 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|55377855|ref|YP_135705.1| - 0.019 14.3 4.5 0.07 12.6 0.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|55377855|ref|YP_135705.1| - 0.025 14.1 2.0 0.036 13.6 2.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|55377855|ref|YP_135705.1| - 0.033 14.2 0.5 0.036 14.1 0.5 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|55377855|ref|YP_135705.1| - 0.037 14.2 2.6 0.049 13.8 2.6 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|55377855|ref|YP_135705.1| - 0.065 13.4 0.8 8.9 6.5 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF5472 PF17566.2 gi|55377855|ref|YP_135705.1| - 0.15 12.1 0.2 0.16 12.0 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5472) PGF-CTERM PF18204.1 gi|55377856|ref|YP_135706.1| - 7.9e-06 25.7 3.9 2e-05 24.4 3.9 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF309 PF03745.14 gi|55377858|ref|YP_135708.1| - 6.5e-15 54.6 0.1 1.1e-14 53.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.14 gi|55377859|ref|YP_135709.1| - 2.1e-14 53.3 0.0 2.5e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|55377859|ref|YP_135709.1| - 0.0032 17.0 0.0 0.0042 16.5 0.0 1.1 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic Aldo_ket_red PF00248.21 gi|55377860|ref|YP_135710.1| - 6.2e-60 202.9 0.0 6.5e-58 196.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family PglZ PF08665.12 gi|55377861|ref|YP_135711.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 PglZ domain ABC_tran PF00005.27 gi|55377862|ref|YP_135712.1| - 6.4e-33 114.2 0.0 1.3e-32 113.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|55377862|ref|YP_135712.1| - 1.9e-11 44.1 7.5 2.9e-11 43.5 7.5 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|55377862|ref|YP_135712.1| - 1.3e-08 34.6 2.5 2.5e-06 27.1 0.1 3.1 2 1 1 3 3 3 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|55377862|ref|YP_135712.1| - 2e-05 24.5 0.0 5.1e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|55377862|ref|YP_135712.1| - 0.0018 17.9 0.2 0.15 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|55377862|ref|YP_135712.1| - 0.0026 18.2 0.1 0.0078 16.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|55377862|ref|YP_135712.1| - 0.0028 17.4 0.0 0.0059 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|55377862|ref|YP_135712.1| - 0.0054 17.0 0.2 0.055 13.8 0.2 2.4 1 1 0 1 1 1 1 AAA domain DUF4306 PF14154.6 gi|55377862|ref|YP_135712.1| - 0.014 15.6 0.5 0.081 13.1 0.0 2.5 3 0 0 3 3 2 0 Domain of unknown function (DUF4306) AAA_23 PF13476.6 gi|55377862|ref|YP_135712.1| - 0.02 15.4 0.2 0.073 13.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain TrkA_N PF02254.18 gi|55377862|ref|YP_135712.1| - 0.021 15.1 0.4 1.1 9.5 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain ABC_ATPase PF09818.9 gi|55377862|ref|YP_135712.1| - 0.027 13.3 0.2 0.069 11.9 0.1 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Zeta_toxin PF06414.12 gi|55377862|ref|YP_135712.1| - 0.029 13.6 0.0 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin IstB_IS21 PF01695.17 gi|55377862|ref|YP_135712.1| - 0.057 13.2 0.7 1.2 8.9 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|55377862|ref|YP_135712.1| - 0.061 13.0 0.1 0.54 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|55377862|ref|YP_135712.1| - 0.091 12.9 0.2 0.32 11.1 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase SART-1 PF03343.13 gi|55377862|ref|YP_135712.1| - 0.1 11.1 0.3 0.18 10.3 0.3 1.3 1 0 0 1 1 1 0 SART-1 family CPBP PF02517.16 gi|55377862|ref|YP_135712.1| - 0.53 10.7 3.3 5.1 7.6 1.4 2.5 2 0 0 2 2 2 0 CPBP intramembrane metalloprotease Glycos_transf_2 PF00535.26 gi|55377863|ref|YP_135713.1| - 2.6e-25 89.2 0.1 7.4e-25 87.7 0.0 1.7 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55377863|ref|YP_135713.1| - 3.6e-09 36.9 0.0 6.5e-09 36.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|55377863|ref|YP_135713.1| - 0.00018 21.1 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|55377863|ref|YP_135713.1| - 0.037 13.7 0.0 0.075 12.7 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family FmdA_AmdA PF03069.15 gi|55377864|ref|YP_135714.1| - 1.3e-54 185.5 0.0 6e-53 180.0 0.0 2.0 1 1 0 1 1 1 1 Acetamidase/Formamidase family DZR PF12773.7 gi|55377864|ref|YP_135714.1| - 0.068 13.2 0.2 0.14 12.2 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55377864|ref|YP_135714.1| - 0.094 12.1 3.9 2.8 7.5 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|55377864|ref|YP_135714.1| - 0.15 12.4 0.2 0.34 11.3 0.2 1.6 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|55377864|ref|YP_135714.1| - 0.21 11.3 2.0 3.2 7.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55377864|ref|YP_135714.1| - 0.27 11.4 1.6 1.4 9.1 2.2 1.9 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|55377864|ref|YP_135714.1| - 0.3 11.2 6.6 0.41 10.8 0.7 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 gi|55377864|ref|YP_135714.1| - 0.55 9.9 1.6 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DNA_RNApol_7kD PF03604.13 gi|55377864|ref|YP_135714.1| - 2.9 7.7 4.3 39 4.0 4.3 2.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DNA_ligase_ZBD PF03119.16 gi|55377864|ref|YP_135714.1| - 3.2 7.9 5.6 11 6.1 0.2 3.4 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain NYN_YacP PF05991.11 gi|55377866|ref|YP_135716.1| - 0.088 12.7 0.4 0.18 11.7 0.4 1.5 1 0 0 1 1 1 0 YacP-like NYN domain Gp5_C PF06715.12 gi|55377866|ref|YP_135716.1| - 2.6 8.4 6.9 8 6.8 0.2 3.3 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) LPAM_2 PF13627.6 gi|55377866|ref|YP_135716.1| - 5.3 7.0 7.1 11 6.0 7.1 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site YdjM PF04307.14 gi|55377867|ref|YP_135717.1| - 5.8e-15 55.0 7.3 7.2e-15 54.7 7.3 1.1 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PIN PF01850.21 gi|55377868|ref|YP_135718.1| - 0.059 13.9 0.0 0.096 13.2 0.0 1.5 1 1 0 1 1 1 0 PIN domain COX7a PF02238.15 gi|55377868|ref|YP_135718.1| - 0.34 11.4 0.8 5.3 7.5 0.5 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII MazE_antitoxin PF04014.18 gi|55377869|ref|YP_135719.1| - 4.1e-12 45.7 0.2 5.8e-12 45.2 0.2 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|55377869|ref|YP_135719.1| - 0.0037 17.2 0.0 0.0051 16.8 0.0 1.4 1 1 0 1 1 1 1 MraZ protein, putative antitoxin-like NapD PF03927.13 gi|55377869|ref|YP_135719.1| - 0.0092 16.0 0.4 0.016 15.2 0.4 1.5 1 1 0 1 1 1 1 NapD protein CDC48_N PF02359.18 gi|55377869|ref|YP_135719.1| - 0.068 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain AbrB-like PF14250.6 gi|55377869|ref|YP_135719.1| - 0.15 12.1 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 AbrB-like transcriptional regulator DUF3368 PF11848.8 gi|55377870|ref|YP_135720.1| - 2.6e-13 49.5 0.0 1.8e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) DUF1611_N PF17396.2 gi|55377870|ref|YP_135720.1| - 0.12 12.6 0.1 0.41 10.9 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain UPF0175 PF03683.13 gi|55377871|ref|YP_135721.1| - 3.1e-07 30.0 1.8 3.4e-07 29.9 0.1 1.8 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|55377871|ref|YP_135721.1| - 0.021 14.7 0.6 0.021 14.7 0.6 2.3 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF2811 PF10929.8 gi|55377871|ref|YP_135721.1| - 0.064 13.5 0.0 0.091 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) RHH_5 PF07878.11 gi|55377871|ref|YP_135721.1| - 0.13 12.2 0.9 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HEAT_2 PF13646.6 gi|55377872|ref|YP_135722.1| - 0.0013 19.1 0.9 0.03 14.7 0.9 2.3 1 1 0 1 1 1 1 HEAT repeats Ribosomal_L12_N PF16320.5 gi|55377872|ref|YP_135722.1| - 0.024 14.3 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain HEAT PF02985.22 gi|55377872|ref|YP_135722.1| - 0.049 13.9 0.1 0.32 11.4 0.0 2.3 2 0 0 2 2 2 0 HEAT repeat Cdc6_C PF09079.11 gi|55377873|ref|YP_135723.1| - 1.1e-18 66.9 0.0 3.2e-18 65.5 0.0 1.8 2 0 0 2 2 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|55377873|ref|YP_135723.1| - 2.1e-13 50.7 0.0 5.7e-13 49.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|55377873|ref|YP_135723.1| - 1.4e-11 45.1 0.6 7.1e-11 42.8 0.2 2.3 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|55377873|ref|YP_135723.1| - 7.8e-06 25.9 0.0 3e-05 24.0 0.0 1.9 1 1 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|55377873|ref|YP_135723.1| - 0.00013 21.8 0.1 0.00029 20.6 0.0 1.6 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|55377873|ref|YP_135723.1| - 0.00032 19.9 0.0 0.00052 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|55377873|ref|YP_135723.1| - 0.00041 20.3 0.3 0.0015 18.5 0.3 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) DAP3 PF10236.9 gi|55377873|ref|YP_135723.1| - 0.0022 17.2 0.0 0.0037 16.5 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA_7 PF12775.7 gi|55377873|ref|YP_135723.1| - 0.0037 16.8 0.0 0.0081 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|55377873|ref|YP_135723.1| - 0.0051 16.5 0.6 0.0086 15.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|55377873|ref|YP_135723.1| - 0.0079 16.6 0.0 0.025 15.0 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_4 PF17864.1 gi|55377873|ref|YP_135723.1| - 0.015 15.0 1.3 0.018 14.8 0.1 1.9 2 0 0 2 2 2 0 RuvB AAA lid domain NB-ARC PF00931.22 gi|55377873|ref|YP_135723.1| - 0.017 14.3 0.0 0.027 13.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TniB PF05621.11 gi|55377873|ref|YP_135723.1| - 0.02 14.3 0.0 0.04 13.3 0.0 1.5 1 1 0 1 1 1 0 Bacterial TniB protein AIG1 PF04548.16 gi|55377873|ref|YP_135723.1| - 0.04 13.2 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 AIG1 family ATPase_2 PF01637.18 gi|55377873|ref|YP_135723.1| - 0.045 13.7 0.0 0.15 11.9 0.0 1.9 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Flagellin_IN PF07196.13 gi|55377873|ref|YP_135723.1| - 0.048 13.8 0.2 0.12 12.6 0.2 1.6 1 0 0 1 1 1 0 Flagellin hook IN motif DUF2075 PF09848.9 gi|55377873|ref|YP_135723.1| - 0.057 12.7 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KAP_NTPase PF07693.14 gi|55377873|ref|YP_135723.1| - 0.061 12.6 0.0 0.28 10.4 0.0 1.9 2 0 0 2 2 2 0 KAP family P-loop domain PhoH PF02562.16 gi|55377873|ref|YP_135723.1| - 0.064 12.7 0.0 6.9 6.1 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein RNA_helicase PF00910.22 gi|55377873|ref|YP_135723.1| - 0.064 13.6 0.0 0.15 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF772 PF05598.11 gi|55377874|ref|YP_135724.1| - 6.6e-05 22.8 0.5 0.0001 22.2 0.5 1.3 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1 PF01609.21 gi|55377875|ref|YP_135725.1| - 0.0035 17.0 0.1 0.0041 16.8 0.1 1.0 1 0 0 1 1 1 1 Transposase DDE domain VAPB_antitox PF02697.14 gi|55377876|ref|YP_135726.1| - 2.6e-09 37.7 4.5 3.2e-09 37.4 4.5 1.2 1 0 0 1 1 1 1 Putative antitoxin PIN PF01850.21 gi|55377877|ref|YP_135727.1| - 1e-11 45.4 0.3 1.3e-11 45.1 0.3 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|55377877|ref|YP_135727.1| - 0.0099 15.6 0.6 0.028 14.2 0.1 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF5615) adh_short PF00106.25 gi|55377877|ref|YP_135727.1| - 0.012 15.1 0.3 0.015 14.8 0.3 1.1 1 0 0 1 1 1 0 short chain dehydrogenase AAA_28 PF13521.6 gi|55377877|ref|YP_135727.1| - 0.063 13.5 0.1 0.073 13.3 0.1 1.0 1 0 0 1 1 1 0 AAA domain HemY_N PF07219.13 gi|55377877|ref|YP_135727.1| - 0.094 12.9 0.2 0.14 12.4 0.2 1.3 1 0 0 1 1 1 0 HemY protein N-terminus YDG PF18657.1 gi|55377877|ref|YP_135727.1| - 0.1 12.8 0.4 0.15 12.3 0.4 1.2 1 0 0 1 1 1 0 YDG domain TrmB PF01978.19 gi|55377878|ref|YP_135728.1| - 0.00061 19.6 0.2 0.006 16.4 0.0 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|55377878|ref|YP_135728.1| - 0.0012 18.9 0.3 0.009 16.0 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|55377878|ref|YP_135728.1| - 0.0027 18.0 0.0 0.0058 17.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|55377878|ref|YP_135728.1| - 0.0076 16.2 0.5 1.4 8.9 0.0 2.7 3 0 0 3 3 3 1 HTH domain HTH_5 PF01022.20 gi|55377878|ref|YP_135728.1| - 0.024 14.5 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|55377878|ref|YP_135728.1| - 0.082 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Cytochrom_C_2 PF01322.20 gi|55377878|ref|YP_135728.1| - 0.13 13.1 0.3 0.13 13.1 0.3 1.8 2 0 0 2 2 2 0 Cytochrome C' HTH_Tnp_Tc3_2 PF01498.18 gi|55377879|ref|YP_135729.1| - 7.1e-06 26.2 0.0 1.1e-05 25.6 0.0 1.5 1 1 0 1 1 1 1 Transposase HTH_12 PF08461.10 gi|55377879|ref|YP_135729.1| - 8e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|55377879|ref|YP_135729.1| - 0.0019 18.2 0.1 0.0029 17.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.19 gi|55377879|ref|YP_135729.1| - 0.0056 16.8 0.0 0.007 16.5 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_DeoR PF08220.12 gi|55377879|ref|YP_135729.1| - 0.0076 16.0 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_33 PF13592.6 gi|55377879|ref|YP_135729.1| - 0.0078 15.8 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.6 gi|55377879|ref|YP_135729.1| - 0.035 14.7 0.0 0.093 13.4 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain HTH_24 PF13412.6 gi|55377879|ref|YP_135729.1| - 0.064 12.8 0.0 0.16 11.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TBPIP PF07106.13 gi|55377879|ref|YP_135729.1| - 0.17 11.8 0.0 0.53 10.3 0.0 1.7 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain AAA_22 PF13401.6 gi|55377880|ref|YP_135730.1| - 1.8e-07 31.5 0.2 0.0024 18.2 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.7 gi|55377880|ref|YP_135730.1| - 1.6e-06 27.3 0.1 2.3e-05 23.5 0.1 2.0 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.9 gi|55377880|ref|YP_135730.1| - 3.8e-05 22.8 2.0 0.00074 18.5 0.1 2.7 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|55377880|ref|YP_135730.1| - 0.00011 22.2 0.0 0.00034 20.6 0.0 1.8 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_16 PF13191.6 gi|55377880|ref|YP_135730.1| - 0.0018 18.7 2.0 0.27 11.6 2.0 2.7 1 1 0 1 1 1 1 AAA ATPase domain DUF853 PF05872.12 gi|55377880|ref|YP_135730.1| - 0.0052 15.4 0.0 0.0095 14.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) T4SS-DNA_transf PF02534.14 gi|55377880|ref|YP_135730.1| - 0.017 13.9 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer Osmo_CC PF08946.10 gi|55377880|ref|YP_135730.1| - 0.021 15.1 0.1 0.064 13.5 0.1 1.8 1 0 0 1 1 1 0 Osmosensory transporter coiled coil CENP-F_leu_zip PF10473.9 gi|55377880|ref|YP_135730.1| - 0.029 14.4 0.5 0.057 13.4 0.5 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran_CTD PF16326.5 gi|55377880|ref|YP_135730.1| - 0.034 14.4 0.5 0.096 12.9 0.5 1.8 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF87 PF01935.17 gi|55377880|ref|YP_135730.1| - 0.04 14.0 0.0 0.3 11.1 0.0 2.1 2 0 0 2 2 2 0 Helicase HerA, central domain KAP_NTPase PF07693.14 gi|55377880|ref|YP_135730.1| - 0.079 12.2 0.0 0.16 11.2 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain PrgI PF12666.7 gi|55377881|ref|YP_135731.1| - 0.011 16.5 0.6 0.022 15.4 0.6 1.5 1 0 0 1 1 1 0 PrgI family protein DUF5592 PF17332.2 gi|55377881|ref|YP_135731.1| - 0.061 13.9 0.1 0.15 12.6 0.1 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5592) Trp_oprn_chp PF09534.10 gi|55377881|ref|YP_135731.1| - 0.59 9.9 4.4 1 9.1 4.0 1.5 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Trypan_PARP PF05887.11 gi|55377882|ref|YP_135732.1| - 0.47 10.4 3.6 0.88 9.6 3.6 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) UPF0179 PF03684.13 gi|55377883|ref|YP_135733.1| - 5.7e-48 162.4 0.0 6.4e-48 162.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|55377883|ref|YP_135733.1| - 0.0089 16.3 0.5 0.015 15.5 0.1 1.6 2 0 0 2 2 2 1 Transposase DDE domain PrkA PF06798.12 gi|55377885|ref|YP_135735.1| - 4.7e-72 242.7 9.7 4.7e-72 242.7 9.7 2.3 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|55377885|ref|YP_135735.1| - 2.7e-64 217.3 0.0 4.2e-64 216.7 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain PrkA PF06798.12 gi|55377886|ref|YP_135736.1| - 3.1e-41 141.7 0.1 6.5e-41 140.7 0.1 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|55377886|ref|YP_135736.1| - 2.2e-18 66.3 0.0 2.6e-15 56.2 0.0 3.0 2 1 0 2 2 2 2 PrkA AAA domain AAA_22 PF13401.6 gi|55377886|ref|YP_135736.1| - 0.13 12.5 0.4 0.63 10.3 0.0 2.4 3 1 0 3 3 3 0 AAA domain DUF444 PF04285.12 gi|55377887|ref|YP_135737.1| - 5e-131 437.6 1.6 5.7e-131 437.5 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) SpoVR PF04293.13 gi|55377888|ref|YP_135738.1| - 3.4e-90 302.7 2.8 2.1e-74 250.7 0.1 2.1 2 0 0 2 2 2 2 SpoVR like protein CBS PF00571.28 gi|55377889|ref|YP_135739.1| - 4.2e-20 71.9 1.8 3.4e-12 46.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain p450 PF00067.22 gi|55377890|ref|YP_135740.1| - 9.3e-78 262.0 0.0 1.2e-77 261.7 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 UPF0047 PF01894.17 gi|55377891|ref|YP_135741.1| - 3.9e-36 123.7 0.0 4.7e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AMP-binding PF00501.28 gi|55377892|ref|YP_135742.1| - 1.5e-91 307.1 0.0 1.9e-91 306.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55377892|ref|YP_135742.1| - 0.17 12.9 0.2 0.7 10.9 0.2 2.1 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain Caps_synth_CapC PF14102.6 gi|55377893|ref|YP_135743.1| - 1.6e-32 112.4 35.4 8.2e-23 81.1 10.2 3.1 3 0 0 3 3 3 2 Capsule biosynthesis CapC Mur_ligase_M PF08245.12 gi|55377894|ref|YP_135744.1| - 2.7e-07 30.8 0.0 4.4e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain Gamma_PGA_hydro PF05908.11 gi|55377895|ref|YP_135745.1| - 1.1e-09 37.9 0.0 1.9e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase Gamma_PGA_hydro PF05908.11 gi|55377896|ref|YP_135746.1| - 1e-15 57.7 0.0 1.4e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase DUF2724 PF10893.8 gi|55377897|ref|YP_135747.1| - 0.047 13.5 0.0 0.07 13.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2724) DUF2116 PF09889.9 gi|55377898|ref|YP_135748.1| - 0.29 11.1 3.0 5.3 7.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NTP_transferase PF00483.23 gi|55377899|ref|YP_135749.1| - 1.3e-38 133.0 0.0 2.2e-38 132.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55377899|ref|YP_135749.1| - 5.8e-16 59.3 0.2 8.8e-16 58.7 0.2 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|55377899|ref|YP_135749.1| - 5.2e-09 35.5 13.4 0.001 18.7 0.1 4.3 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|55377899|ref|YP_135749.1| - 0.0022 17.8 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|55377899|ref|YP_135749.1| - 0.0093 15.7 6.4 4 7.3 0.0 4.1 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF4352 PF11611.8 gi|55377900|ref|YP_135750.1| - 2.1e-09 37.7 0.1 4.8e-07 30.1 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4352) CARDB PF07705.11 gi|55377900|ref|YP_135750.1| - 0.041 14.1 2.0 21 5.4 0.1 3.6 3 1 1 4 4 4 0 CARDB 3HCDH_N PF02737.18 gi|55377901|ref|YP_135751.1| - 2.8e-65 219.6 0.2 4.4e-65 218.9 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|55377901|ref|YP_135751.1| - 6.1e-61 205.9 0.0 9.5e-61 205.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|55377901|ref|YP_135751.1| - 4.6e-50 168.2 1.3 1.2e-31 109.2 0.0 3.6 3 0 0 3 3 3 3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|55377901|ref|YP_135751.1| - 3.2e-36 125.5 0.4 4.7e-32 111.8 0.0 2.6 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|55377901|ref|YP_135751.1| - 1.9e-06 28.1 0.2 7.2e-06 26.3 0.2 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|55377901|ref|YP_135751.1| - 0.00019 21.4 0.0 0.00039 20.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|55377901|ref|YP_135751.1| - 0.00099 19.6 2.5 0.0094 16.5 2.5 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|55377901|ref|YP_135751.1| - 0.089 13.4 0.2 0.26 12.0 0.2 1.8 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.24 gi|55377902|ref|YP_135752.1| - 8.2e-50 168.9 3.5 1.7e-49 167.9 3.5 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|55377902|ref|YP_135752.1| - 6.4e-34 117.0 0.5 1.9e-33 115.5 0.5 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55377902|ref|YP_135752.1| - 4.1e-25 88.6 5.9 6e-25 88.1 5.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55377902|ref|YP_135752.1| - 7.9e-24 83.7 0.0 1.8e-23 82.6 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Sec8_exocyst PF04048.14 gi|55377902|ref|YP_135752.1| - 0.044 13.7 0.5 0.095 12.6 0.1 1.7 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain OrfB_Zn_ribbon PF07282.11 gi|55377903|ref|YP_135753.1| - 6.1e-22 77.3 0.4 1.1e-21 76.5 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|55377903|ref|YP_135753.1| - 0.012 15.3 4.4 0.48 10.2 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_2 PF13240.6 gi|55377903|ref|YP_135753.1| - 0.015 15.0 5.1 0.2 11.4 5.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-piccolo PF05715.13 gi|55377903|ref|YP_135753.1| - 0.035 14.3 0.5 0.063 13.4 0.5 1.4 1 0 0 1 1 1 0 Piccolo Zn-finger DZR PF12773.7 gi|55377903|ref|YP_135753.1| - 0.063 13.3 0.9 0.11 12.6 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|55377903|ref|YP_135753.1| - 0.14 11.7 3.1 2.1 7.9 0.2 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|55377903|ref|YP_135753.1| - 0.29 10.9 2.0 3.8 7.3 2.6 2.3 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein UPF0547 PF10571.9 gi|55377903|ref|YP_135753.1| - 0.41 10.8 3.1 1.5 8.9 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_IS605 PF01385.19 gi|55377904|ref|YP_135754.1| - 0.019 15.2 0.0 0.019 15.2 0.0 2.6 3 0 0 3 3 3 0 Probable transposase Hexapep PF00132.24 gi|55377905|ref|YP_135755.1| - 4.2e-13 48.4 5.8 9.6e-07 28.3 1.0 2.8 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55377905|ref|YP_135755.1| - 4e-05 23.3 9.8 0.00042 20.0 1.9 2.9 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|55377905|ref|YP_135755.1| - 0.0034 17.7 0.0 0.0051 17.2 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal HhH-GPD PF00730.25 gi|55377906|ref|YP_135756.1| - 1.8e-15 57.3 0.0 2.5e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF4865 PF16157.5 gi|55377906|ref|YP_135756.1| - 0.045 13.7 0.1 0.11 12.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4865) HHH_5 PF14520.6 gi|55377906|ref|YP_135756.1| - 0.059 14.0 0.0 0.25 12.0 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain RimK PF08443.11 gi|55377907|ref|YP_135757.1| - 3.2e-29 101.9 0.0 1.3e-28 99.9 0.0 1.8 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|55377907|ref|YP_135757.1| - 6e-12 45.9 0.0 1.2e-11 45.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Zn_protease PF05618.11 gi|55377907|ref|YP_135757.1| - 9.1e-11 41.8 0.2 1.2e-07 31.7 0.0 2.5 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|55377907|ref|YP_135757.1| - 2.2e-08 33.7 0.0 4.5e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain R2K_3 PF14243.6 gi|55377907|ref|YP_135757.1| - 0.00023 21.2 0.2 0.00053 20.1 0.2 1.7 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|55377907|ref|YP_135757.1| - 0.00036 21.0 0.3 0.00083 19.9 0.3 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease ATPgrasp_YheCD PF14398.6 gi|55377907|ref|YP_135757.1| - 0.031 13.5 0.0 0.09 12.0 0.0 1.7 1 1 0 1 1 1 0 YheC/D like ATP-grasp Asp_protease_2 PF13650.6 gi|55377907|ref|YP_135757.1| - 0.064 13.9 0.9 0.19 12.4 0.9 1.9 1 0 0 1 1 1 0 Aspartyl protease AstE_AspA PF04952.14 gi|55377908|ref|YP_135758.1| - 6.5e-67 225.6 0.0 8.2e-67 225.3 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Biotin_lipoyl PF00364.22 gi|55377908|ref|YP_135758.1| - 0.22 11.4 0.0 0.39 10.6 0.0 1.4 1 0 0 1 1 1 0 Biotin-requiring enzyme Sdh_cyt PF01127.22 gi|55377909|ref|YP_135759.1| - 1.1e-25 90.0 3.5 1.3e-25 89.8 3.5 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|55377910|ref|YP_135760.1| - 1.7e-08 34.5 6.0 2.1e-08 34.2 6.0 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2501 PF10696.9 gi|55377910|ref|YP_135760.1| - 0.076 13.3 0.1 0.1 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2501) DUF2517 PF10725.9 gi|55377910|ref|YP_135760.1| - 0.13 12.0 0.5 0.29 10.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) Fer2_3 PF13085.6 gi|55377911|ref|YP_135761.1| - 6.2e-33 113.1 0.3 2.2e-32 111.3 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|55377911|ref|YP_135761.1| - 1.7e-12 47.6 4.0 1.7e-12 47.6 4.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55377911|ref|YP_135761.1| - 9.5e-09 35.2 4.4 2.3e-08 34.0 4.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55377911|ref|YP_135761.1| - 3.9e-06 27.4 5.1 4.7e-06 27.1 3.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55377911|ref|YP_135761.1| - 3.2e-05 24.4 4.4 8.6e-05 23.0 4.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55377911|ref|YP_135761.1| - 0.00035 20.7 8.7 0.0027 17.8 8.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|55377911|ref|YP_135761.1| - 0.014 16.3 14.3 0.026 15.4 1.8 3.4 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|55377911|ref|YP_135761.1| - 0.03 14.4 2.3 0.23 11.6 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|55377911|ref|YP_135761.1| - 0.48 11.1 8.7 0.94 10.1 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Rhamno_transf PF11316.8 gi|55377911|ref|YP_135761.1| - 1.5 8.1 5.6 0.39 10.1 1.9 1.8 2 0 0 2 2 2 0 Putative rhamnosyl transferase Fer4 PF00037.27 gi|55377911|ref|YP_135761.1| - 1.9 8.5 9.8 6.2 6.8 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|55377911|ref|YP_135761.1| - 1.9 8.3 14.3 0.53 10.1 0.5 2.8 2 1 1 3 3 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|55377911|ref|YP_135761.1| - 2 8.7 12.6 1.8 8.8 1.4 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|55377911|ref|YP_135761.1| - 3.7 8.7 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|55377911|ref|YP_135761.1| - 4.8 7.4 7.6 8.1 6.7 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain PAS_3 PF08447.12 gi|55377912|ref|YP_135762.1| - 8.8e-35 118.9 0.5 1e-16 61.0 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|55377912|ref|YP_135762.1| - 1.6e-16 60.4 0.1 1.7e-07 31.4 0.0 2.6 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|55377912|ref|YP_135762.1| - 3.9e-16 59.0 0.4 2.5e-07 30.7 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|55377912|ref|YP_135762.1| - 1.3e-15 57.6 4.7 5.4e-08 33.1 0.3 2.6 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.6 gi|55377912|ref|YP_135762.1| - 3.8e-12 46.3 0.0 8.3e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|55377912|ref|YP_135762.1| - 1.1e-11 45.2 0.0 2.2e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55377912|ref|YP_135762.1| - 4.4e-10 39.5 0.4 9.7e-10 38.4 0.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|55377912|ref|YP_135762.1| - 2.3e-08 33.9 0.6 0.0038 17.2 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 gi|55377912|ref|YP_135762.1| - 0.00024 21.1 0.2 0.00076 19.4 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain FAD_binding_2 PF00890.24 gi|55377913|ref|YP_135763.1| - 3e-121 405.4 7.7 4.4e-121 404.9 7.7 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|55377913|ref|YP_135763.1| - 5.3e-38 129.9 1.0 9e-38 129.2 1.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|55377913|ref|YP_135763.1| - 1.6e-08 34.1 0.8 7.5e-05 22.1 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|55377913|ref|YP_135763.1| - 4e-05 22.5 0.8 7.6e-05 21.6 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|55377913|ref|YP_135763.1| - 0.00013 21.2 4.0 0.00043 19.5 3.8 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|55377913|ref|YP_135763.1| - 0.00042 20.0 7.9 0.0092 15.6 7.2 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|55377913|ref|YP_135763.1| - 0.00046 19.7 3.5 0.00046 19.7 3.5 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|55377913|ref|YP_135763.1| - 0.0055 16.0 1.0 0.014 14.7 1.0 1.7 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|55377913|ref|YP_135763.1| - 0.0089 15.3 2.4 0.034 13.4 0.4 2.5 3 0 0 3 3 3 1 Thi4 family Pyr_redox_3 PF13738.6 gi|55377913|ref|YP_135763.1| - 0.095 11.9 3.0 0.12 11.6 0.6 2.2 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55377913|ref|YP_135763.1| - 0.12 13.0 1.1 0.36 11.4 1.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|55377913|ref|YP_135763.1| - 0.7 9.1 4.5 0.23 10.7 1.6 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Cupin_2 PF07883.11 gi|55377914|ref|YP_135764.1| - 4.1e-11 42.4 0.9 5.2e-11 42.1 0.9 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|55377914|ref|YP_135764.1| - 1.7e-05 24.4 0.2 2.1e-05 24.1 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|55377914|ref|YP_135764.1| - 0.00021 21.0 0.0 0.00027 20.7 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 gi|55377914|ref|YP_135764.1| - 0.0019 18.1 0.0 0.0021 17.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_6 PF12852.7 gi|55377914|ref|YP_135764.1| - 0.011 15.5 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.18 gi|55377914|ref|YP_135764.1| - 0.013 15.4 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase EutQ PF06249.12 gi|55377914|ref|YP_135764.1| - 0.016 15.0 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ KduI PF04962.12 gi|55377914|ref|YP_135764.1| - 0.022 14.1 0.2 0.036 13.4 0.2 1.5 1 1 0 1 1 1 0 KduI/IolB family Pirin_C_2 PF17954.1 gi|55377914|ref|YP_135764.1| - 0.041 14.0 0.0 0.053 13.7 0.0 1.1 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain Prok-RING_1 PF14446.6 gi|55377915|ref|YP_135765.1| - 0.089 12.7 0.5 0.16 12.0 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DBI_PRT PF02277.17 gi|55377916|ref|YP_135766.1| - 5.2e-05 22.6 2.5 8.3e-05 22.0 2.5 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase GATase_3 PF07685.14 gi|55377917|ref|YP_135767.1| - 4.3e-33 114.6 0.0 5.5e-33 114.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|55377917|ref|YP_135767.1| - 9.5e-09 35.4 0.0 0.0001 22.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|55377917|ref|YP_135767.1| - 1.2e-08 35.0 0.0 2.1e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNO PF01174.19 gi|55377917|ref|YP_135767.1| - 0.03 14.2 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DisA_N PF02457.16 gi|55377918|ref|YP_135768.1| - 9.8e-21 73.5 0.0 1.5e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|55377918|ref|YP_135768.1| - 0.025 14.8 0.0 0.3 11.3 0.0 2.3 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain MS_channel PF00924.18 gi|55377919|ref|YP_135769.1| - 1.8e-19 70.1 1.7 3.7e-19 69.1 1.7 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|55377919|ref|YP_135769.1| - 0.014 15.4 7.2 0.02 14.9 0.1 3.2 3 0 0 3 3 3 0 Conserved TM helix Fimbrial_PilY2 PF14481.6 gi|55377919|ref|YP_135769.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 Hexapep PF00132.24 gi|55377920|ref|YP_135770.1| - 5.3e-08 32.3 6.8 1.5e-07 30.9 0.6 3.1 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55377920|ref|YP_135770.1| - 2e-07 30.7 5.2 3e-06 26.9 1.4 3.0 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase TrkH PF02386.16 gi|55377921|ref|YP_135771.1| - 1.7e-55 188.4 12.3 4.5e-29 101.3 4.7 2.0 2 0 0 2 2 2 2 Cation transport protein GARS_A PF01071.19 gi|55377922|ref|YP_135772.1| - 6.2e-53 179.5 0.0 1.3e-52 178.5 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|55377922|ref|YP_135772.1| - 1.6e-21 76.8 0.1 3.1e-21 75.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|55377922|ref|YP_135772.1| - 1.1e-11 44.8 0.6 2.7e-11 43.6 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|55377922|ref|YP_135772.1| - 1.2e-05 25.4 0.0 2.4e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|55377922|ref|YP_135772.1| - 0.012 14.9 0.0 0.037 13.3 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|55377922|ref|YP_135772.1| - 0.02 14.4 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|55377922|ref|YP_135772.1| - 0.065 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp domain Thioredox_DsbH PF03190.15 gi|55377924|ref|YP_135774.1| - 1.4e-71 239.7 0.0 2.3e-71 239.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|55377924|ref|YP_135774.1| - 1.5e-09 37.9 0.0 4.4e-09 36.4 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|55377924|ref|YP_135774.1| - 7.8e-06 25.4 0.1 0.044 13.0 0.1 2.5 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|55377924|ref|YP_135774.1| - 0.0034 16.5 0.0 0.11 11.5 0.0 2.6 3 0 0 3 3 3 1 Glycosyl Hydrolase Family 88 Thioredoxin PF00085.20 gi|55377925|ref|YP_135775.1| - 0.0089 16.0 0.0 0.017 15.1 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Peptidase_M15_4 PF13539.6 gi|55377925|ref|YP_135775.1| - 0.12 12.9 0.2 0.21 12.1 0.2 1.4 1 0 0 1 1 1 0 D-alanyl-D-alanine carboxypeptidase Glyco_hydro_3_C PF01915.22 gi|55377926|ref|YP_135776.1| - 1.9e-56 191.3 0.0 4e-56 190.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|55377926|ref|YP_135776.1| - 1.4e-55 189.0 0.1 6.7e-55 186.7 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|55377926|ref|YP_135776.1| - 1.3e-19 70.0 0.1 2.8e-19 69.0 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain MycE_N PF17843.1 gi|55377926|ref|YP_135776.1| - 0.34 11.4 5.8 0.42 11.1 3.1 2.6 2 0 0 2 2 2 0 MycE methyltransferase N-terminal HisKA_7TM PF16927.5 gi|55377927|ref|YP_135777.1| - 5.2e-40 137.8 18.0 6.9e-40 137.4 18.0 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|55377927|ref|YP_135777.1| - 1.2e-14 54.7 0.2 3.7e-14 53.2 0.2 1.8 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55377927|ref|YP_135777.1| - 1.5e-10 40.9 0.5 3.5e-10 39.8 0.5 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|55377927|ref|YP_135777.1| - 1.4e-09 38.2 0.1 4.1e-09 36.7 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55377927|ref|YP_135777.1| - 5.3e-07 29.8 0.1 1.7e-06 28.2 0.1 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|55377927|ref|YP_135777.1| - 1.4e-06 28.3 0.1 2.7e-06 27.3 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|55377927|ref|YP_135777.1| - 5.1e-06 26.4 0.0 1.9e-05 24.6 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|55377927|ref|YP_135777.1| - 0.0015 18.5 0.1 0.0042 17.0 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF3987 PF13148.6 gi|55377927|ref|YP_135777.1| - 0.078 12.0 0.3 0.14 11.1 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) HATPase_c_3 PF13589.6 gi|55377927|ref|YP_135777.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Lactamase_B PF00753.27 gi|55377930|ref|YP_135780.1| - 2.7e-18 66.7 12.7 2.7e-17 63.4 12.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55377930|ref|YP_135780.1| - 3.5e-06 26.7 3.3 4.9e-06 26.2 3.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Gp5_C PF06715.12 gi|55377930|ref|YP_135780.1| - 0.064 13.4 1.0 3.4 8.0 0.3 2.9 3 0 0 3 3 3 0 Gp5 C-terminal repeat (3 copies) Lactamase_B_6 PF16661.5 gi|55377930|ref|YP_135780.1| - 0.099 12.1 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|55377930|ref|YP_135780.1| - 0.12 12.2 3.2 0.19 11.6 3.2 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Response_reg PF00072.24 gi|55377931|ref|YP_135781.1| - 2e-21 76.3 0.2 3.5e-21 75.5 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|55377931|ref|YP_135781.1| - 7.8e-21 74.2 7.9 7.8e-21 74.2 7.9 2.3 2 1 1 3 3 3 1 HalX domain ArnB_C PF18677.1 gi|55377931|ref|YP_135781.1| - 0.043 13.9 0.7 0.077 13.1 0.7 1.5 1 0 0 1 1 1 0 Archaellum regulatory network B, C-terminal domain RapH_N PF18801.1 gi|55377931|ref|YP_135781.1| - 0.043 13.9 1.1 0.17 12.0 0.3 2.2 2 0 0 2 2 2 0 response regulator aspartate phosphatase H, N terminal MapZ_EC1 PF18041.1 gi|55377931|ref|YP_135781.1| - 0.22 11.8 2.6 1.8 8.8 0.7 2.2 1 1 1 2 2 2 0 MapZ extracellular domain 1 Pup PF05639.11 gi|55377931|ref|YP_135781.1| - 0.37 11.7 4.9 15 6.5 0.0 3.3 3 0 0 3 3 3 0 Pup-like protein ATPase PF06745.13 gi|55377932|ref|YP_135782.1| - 1.1e-05 24.9 0.0 2.3e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 KaiC Peptidase_S32 PF05579.13 gi|55377932|ref|YP_135782.1| - 0.045 13.0 0.3 0.062 12.5 0.3 1.2 1 0 0 1 1 1 0 Equine arteritis virus serine endopeptidase S32 TPP_enzyme_N PF02776.18 gi|55377932|ref|YP_135782.1| - 0.077 12.6 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thy1 PF02511.15 gi|55377933|ref|YP_135783.1| - 8.6e-63 211.6 0.0 9.8e-63 211.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein eIF-5_eIF-2B PF01873.17 gi|55377935|ref|YP_135785.1| - 2.6e-37 127.3 0.0 3e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Nuclease_act PF08133.11 gi|55377935|ref|YP_135785.1| - 0.16 12.2 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Anticodon nuclease activator family DNA_RNApol_7kD PF03604.13 gi|55377935|ref|YP_135785.1| - 0.36 10.6 3.0 2.7 7.7 3.3 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|55377936|ref|YP_135786.1| - 6.5e-05 22.8 0.7 0.14 12.1 0.3 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon HypA PF01155.19 gi|55377936|ref|YP_135786.1| - 0.00088 19.3 0.2 0.00093 19.2 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|55377936|ref|YP_135786.1| - 0.0017 18.2 4.3 0.26 11.3 0.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.13 gi|55377936|ref|YP_135786.1| - 0.0024 17.6 0.6 0.32 10.7 0.4 2.2 2 0 0 2 2 2 1 InsA N-terminal domain zinc_ribbon_10 PF10058.9 gi|55377936|ref|YP_135786.1| - 0.0062 16.2 0.3 0.0084 15.8 0.3 1.3 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|55377936|ref|YP_135786.1| - 0.0078 16.1 2.7 0.29 11.1 0.2 2.1 1 1 0 2 2 2 1 zinc-ribbon domain Elf1 PF05129.13 gi|55377936|ref|YP_135786.1| - 0.0089 16.1 1.5 0.018 15.1 0.1 1.8 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like zinc-ribbons_6 PF07191.12 gi|55377936|ref|YP_135786.1| - 0.0098 15.9 1.0 0.016 15.2 1.1 1.4 1 1 0 1 1 1 1 zinc-ribbons DUF4379 PF14311.6 gi|55377936|ref|YP_135786.1| - 0.011 16.1 2.2 0.093 13.1 1.9 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-RING_4 PF14570.6 gi|55377936|ref|YP_135786.1| - 0.013 15.2 1.5 3.5 7.5 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain TackOD1 PF18551.1 gi|55377936|ref|YP_135786.1| - 0.015 15.0 0.4 0.017 14.8 0.4 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-LITAF-like PF10601.9 gi|55377936|ref|YP_135786.1| - 0.019 15.2 0.9 1 9.6 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain UPF0515 PF15135.6 gi|55377936|ref|YP_135786.1| - 0.023 14.1 0.3 0.025 13.9 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Zn_Tnp_IS1595 PF12760.7 gi|55377936|ref|YP_135786.1| - 0.023 14.7 4.2 0.19 11.7 0.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf_Rg PF17915.1 gi|55377936|ref|YP_135786.1| - 0.024 14.1 0.2 4.5 6.8 0.1 2.3 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-3CxxC PF13695.6 gi|55377936|ref|YP_135786.1| - 0.03 14.8 0.9 0.42 11.1 0.0 2.0 1 1 1 2 2 2 0 Zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|55377936|ref|YP_135786.1| - 0.031 14.2 1.0 0.043 13.7 1.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|55377936|ref|YP_135786.1| - 0.033 13.7 0.9 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|55377936|ref|YP_135786.1| - 0.05 13.5 1.6 3.6 7.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Sgf11 PF08209.11 gi|55377936|ref|YP_135786.1| - 0.053 13.1 1.6 1.3 8.7 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.6 gi|55377936|ref|YP_135786.1| - 0.058 12.8 2.1 2.1 7.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|55377936|ref|YP_135786.1| - 0.059 13.6 1.7 7.5 6.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon Dehyd-heme_bind PF09098.10 gi|55377936|ref|YP_135786.1| - 0.099 12.2 0.1 0.099 12.2 0.1 1.1 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding Cys_rich_KTR PF14205.6 gi|55377936|ref|YP_135786.1| - 0.1 12.4 1.6 6.4 6.7 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR Anti-TRAP PF15777.5 gi|55377936|ref|YP_135786.1| - 0.14 12.2 1.9 0.26 11.3 2.0 1.4 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein CpXC PF14353.6 gi|55377936|ref|YP_135786.1| - 0.31 11.1 2.5 1.7 8.7 0.2 2.0 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|55377936|ref|YP_135786.1| - 0.51 10.5 4.4 1.6 8.9 4.3 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|55377936|ref|YP_135786.1| - 0.63 9.4 5.1 2.4 7.6 5.4 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.20 gi|55377936|ref|YP_135786.1| - 0.72 9.9 6.5 0.59 10.2 0.5 2.2 1 1 1 2 2 2 0 Rubredoxin Rubredoxin_2 PF18073.1 gi|55377936|ref|YP_135786.1| - 3.4 7.5 8.5 9.1 6.1 1.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIB PF00382.19 gi|55377937|ref|YP_135787.1| - 7.9e-35 118.7 0.1 3.9e-16 58.8 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55377937|ref|YP_135787.1| - 2.8e-16 58.7 6.5 5.1e-16 57.9 6.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|55377937|ref|YP_135787.1| - 1.7e-05 24.9 0.0 0.012 15.6 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Anti-TRAP PF15777.5 gi|55377937|ref|YP_135787.1| - 0.0038 17.2 0.2 0.0069 16.3 0.2 1.4 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein A2L_zn_ribbon PF08792.10 gi|55377937|ref|YP_135787.1| - 0.01 15.5 1.5 0.018 14.8 1.5 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|55377937|ref|YP_135787.1| - 0.018 14.6 0.0 0.076 12.5 0.0 2.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|55377937|ref|YP_135787.1| - 0.061 12.7 0.1 0.81 9.1 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 OrfB_Zn_ribbon PF07282.11 gi|55377937|ref|YP_135787.1| - 0.11 12.4 1.7 0.21 11.5 1.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|55377937|ref|YP_135787.1| - 1.2 9.3 5.3 3.2 7.9 0.7 2.4 1 1 2 3 3 3 0 Zinc ribbon domain DUF357 PF04010.13 gi|55377939|ref|YP_135789.1| - 4.9e-31 106.6 0.2 5.7e-31 106.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Pyr_redox_2 PF07992.14 gi|55377940|ref|YP_135790.1| - 1.9e-41 142.2 0.6 2.3e-41 142.0 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55377940|ref|YP_135790.1| - 4e-15 55.9 0.0 4e-11 42.7 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55377940|ref|YP_135790.1| - 2.6e-14 53.5 0.2 8e-13 48.8 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55377940|ref|YP_135790.1| - 2.4e-05 23.6 2.6 0.00081 18.6 0.0 3.0 2 1 1 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|55377940|ref|YP_135790.1| - 3.3e-05 22.8 0.0 0.027 13.2 0.0 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|55377940|ref|YP_135790.1| - 0.00014 22.0 0.0 0.0015 18.7 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55377940|ref|YP_135790.1| - 0.001 18.7 0.6 1.2 8.6 0.1 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|55377940|ref|YP_135790.1| - 0.0013 19.2 0.0 0.02 15.4 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|55377940|ref|YP_135790.1| - 0.0025 17.2 0.2 0.0067 15.8 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|55377940|ref|YP_135790.1| - 0.051 12.6 0.8 0.84 8.6 0.1 2.9 4 0 0 4 4 4 0 Glucose inhibited division protein A HicB_lk_antitox PF15919.5 gi|55377940|ref|YP_135790.1| - 0.2 11.8 1.0 0.51 10.5 0.8 1.8 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system RibD_C PF01872.17 gi|55377942|ref|YP_135792.1| - 5.2e-51 173.3 0.0 5.8e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Tir_receptor_N PF07490.11 gi|55377942|ref|YP_135792.1| - 0.03 14.1 0.1 0.04 13.7 0.1 1.1 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus tRNA_anti-codon PF01336.25 gi|55377944|ref|YP_135794.1| - 3.1e-05 23.9 2.3 0.75 9.8 0.0 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain zf-RING_7 PF02591.15 gi|55377944|ref|YP_135794.1| - 0.026 14.7 0.4 0.065 13.4 0.4 1.7 1 0 0 1 1 1 0 C4-type zinc ribbon domain Metallophos_2 PF12850.7 gi|55377946|ref|YP_135796.1| - 8.9e-08 32.5 0.2 1.4e-07 31.9 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55377946|ref|YP_135796.1| - 1.4e-05 25.7 1.8 0.00012 22.6 0.2 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase DEAD_assoc PF08494.11 gi|55377948|ref|YP_135798.1| - 5.9e-33 114.3 0.3 2.4e-32 112.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|55377948|ref|YP_135798.1| - 2.3e-29 102.4 0.0 8.4e-29 100.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|55377948|ref|YP_135798.1| - 4.1e-21 75.4 0.0 2e-20 73.2 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|55377948|ref|YP_135798.1| - 2.6e-10 40.6 0.0 9.2e-10 38.8 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|55377948|ref|YP_135798.1| - 0.0074 15.9 0.2 0.029 14.0 0.2 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|55377948|ref|YP_135798.1| - 0.0088 16.4 0.1 0.061 13.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain HypA PF01155.19 gi|55377948|ref|YP_135798.1| - 0.021 14.8 0.5 0.076 13.0 0.3 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|55377948|ref|YP_135798.1| - 0.023 13.4 0.0 0.08 11.6 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain Zn-ribbon_8 PF09723.10 gi|55377948|ref|YP_135798.1| - 0.17 12.0 0.7 0.37 11.0 0.7 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Spo0M PF07070.11 gi|55377949|ref|YP_135799.1| - 6.3e-71 238.2 0.2 7.5e-71 238.0 0.2 1.1 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.22 gi|55377949|ref|YP_135799.1| - 0.019 15.4 0.0 0.033 14.6 0.0 1.3 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain PAS_4 PF08448.10 gi|55377950|ref|YP_135800.1| - 1.9e-28 98.9 3.9 4.6e-14 52.6 0.2 2.6 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|55377950|ref|YP_135800.1| - 1.6e-23 83.0 0.0 4.2e-23 81.6 0.0 1.7 1 1 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|55377950|ref|YP_135800.1| - 5.6e-16 58.5 0.1 3.2e-09 36.8 0.0 2.3 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|55377950|ref|YP_135800.1| - 2.7e-14 52.8 0.1 8.1e-06 25.7 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_9 PF13426.7 gi|55377950|ref|YP_135800.1| - 6.3e-14 52.1 0.1 6.8e-06 26.3 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|55377950|ref|YP_135800.1| - 3.2e-09 37.0 1.5 0.00027 21.1 0.1 2.7 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|55377950|ref|YP_135800.1| - 7.2e-05 23.0 0.0 0.13 12.5 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_10 PF13596.6 gi|55377950|ref|YP_135800.1| - 0.0013 19.3 0.3 0.018 15.6 0.0 2.6 2 1 1 3 3 3 1 PAS domain OKR_DC_1_N PF03709.15 gi|55377950|ref|YP_135800.1| - 0.0089 16.3 0.0 0.033 14.5 0.0 2.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain VIT1 PF01988.19 gi|55377950|ref|YP_135800.1| - 0.12 12.3 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 VIT family zf-ribbon_3 PF13248.6 gi|55377951|ref|YP_135801.1| - 3.9e-06 26.1 3.2 6.6e-06 25.3 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|55377951|ref|YP_135801.1| - 1.5e-05 24.5 2.2 2.2e-05 24.0 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|55377951|ref|YP_135801.1| - 0.0004 20.3 0.6 0.00064 19.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Lipase_3 PF01764.25 gi|55377951|ref|YP_135801.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Lipase (class 3) zf_UBZ PF18439.1 gi|55377951|ref|YP_135801.1| - 0.022 14.3 1.5 3.7 7.2 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2HC5 PF06221.13 gi|55377951|ref|YP_135801.1| - 0.16 11.9 2.0 0.42 10.6 2.0 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-ACC PF17848.1 gi|55377951|ref|YP_135801.1| - 0.19 11.8 2.5 4.6 7.4 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_9 PF14369.6 gi|55377951|ref|YP_135801.1| - 0.2 12.0 7.2 2.4 8.5 1.0 2.3 1 1 1 2 2 2 0 zinc-ribbon Wzy_C_2 PF11846.8 gi|55377951|ref|YP_135801.1| - 0.22 11.4 1.2 0.47 10.4 1.2 1.5 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal DNA_ligase_ZBD PF03119.16 gi|55377951|ref|YP_135801.1| - 0.23 11.5 3.4 2.1 8.5 1.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|55377951|ref|YP_135801.1| - 0.26 11.4 7.2 0.83 9.8 1.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|55377951|ref|YP_135801.1| - 0.32 10.9 3.0 0.6 10.1 3.0 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.6 gi|55377951|ref|YP_135801.1| - 0.45 11.2 1.4 35 5.2 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.9 gi|55377951|ref|YP_135801.1| - 0.58 10.5 3.7 0.86 9.9 0.3 2.7 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|55377951|ref|YP_135801.1| - 0.67 10.0 2.2 2.2 8.3 2.2 1.6 1 1 0 1 1 1 0 zinc-ribbons DUF3090 PF11290.8 gi|55377951|ref|YP_135801.1| - 1 9.2 3.4 1.1 9.0 1.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3090) TF_Zn_Ribbon PF08271.12 gi|55377951|ref|YP_135801.1| - 1.3 8.6 3.4 24 4.6 0.1 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|55377951|ref|YP_135801.1| - 1.3 8.4 4.0 14 5.1 0.8 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.19 gi|55377951|ref|YP_135801.1| - 1.8 8.4 4.6 19 5.1 1.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|55377951|ref|YP_135801.1| - 3 8.0 7.7 5.5 7.2 7.7 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.7 gi|55377951|ref|YP_135801.1| - 3.7 8.0 5.3 26 5.3 1.0 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.7 gi|55377951|ref|YP_135801.1| - 5.1 7.1 6.2 7.5 6.6 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain MutS_V PF00488.21 gi|55377952|ref|YP_135802.1| - 8.1e-09 35.8 0.0 1.3e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_28 PF13521.6 gi|55377952|ref|YP_135802.1| - 0.0017 18.6 0.0 0.0017 18.6 0.0 3.0 3 1 1 4 4 4 1 AAA domain AAA_21 PF13304.6 gi|55377952|ref|YP_135802.1| - 0.0073 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system HHH_5 PF14520.6 gi|55377952|ref|YP_135802.1| - 0.013 16.1 2.7 0.27 11.9 0.1 3.5 3 0 0 3 3 3 0 Helix-hairpin-helix domain AAA_23 PF13476.6 gi|55377952|ref|YP_135802.1| - 0.048 14.2 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain LTXXQ PF07813.12 gi|55377952|ref|YP_135802.1| - 0.14 12.9 1.6 1.1 10.1 0.3 2.4 2 0 0 2 2 2 0 LTXXQ motif family protein AAA_14 PF13173.6 gi|55377952|ref|YP_135802.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|55377952|ref|YP_135802.1| - 0.16 12.4 0.1 0.58 10.6 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif Polyketide_cyc2 PF10604.9 gi|55377953|ref|YP_135803.1| - 1.7e-17 64.0 0.2 2e-17 63.8 0.2 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|55377953|ref|YP_135803.1| - 1.5e-08 35.0 0.0 1.8e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|55377953|ref|YP_135803.1| - 7.1e-05 23.0 0.0 0.00012 22.2 0.0 1.5 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.13 gi|55377953|ref|YP_135803.1| - 0.024 14.4 0.0 0.081 12.7 0.0 2.0 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) E1-E2_ATPase PF00122.20 gi|55377956|ref|YP_135806.1| - 8.2e-45 152.5 2.8 8.2e-45 152.5 2.8 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55377956|ref|YP_135806.1| - 6.2e-36 124.7 4.2 1.1e-35 123.8 4.2 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55377956|ref|YP_135806.1| - 7e-07 29.6 0.0 2e-06 28.1 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|55377956|ref|YP_135806.1| - 2.6e-05 24.1 0.7 3.7e-05 23.6 0.7 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|55377956|ref|YP_135806.1| - 0.0083 16.8 0.7 0.026 15.2 0.4 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.6 gi|55377957|ref|YP_135807.1| - 7.3e-50 169.7 16.4 9.3e-50 169.3 16.4 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Copper-bind PF00127.20 gi|55377959|ref|YP_135809.1| - 2.2e-35 121.0 1.2 1.6e-17 63.7 0.1 2.9 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family SPC25 PF06703.11 gi|55377959|ref|YP_135809.1| - 0.039 13.7 0.1 0.077 12.8 0.1 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) PKD PF00801.20 gi|55377959|ref|YP_135809.1| - 0.11 12.3 14.9 0.13 12.1 1.1 2.9 2 1 0 2 2 2 0 PKD domain LodA_N PF17990.1 gi|55377959|ref|YP_135809.1| - 0.96 9.3 3.4 8.5 6.2 0.3 2.2 2 0 0 2 2 2 0 L-Lysine epsilon oxidase N-terminal COX2 PF00116.20 gi|55377960|ref|YP_135810.1| - 2.5e-12 46.7 0.2 3.6e-12 46.2 0.2 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|55377960|ref|YP_135810.1| - 5e-05 23.4 0.0 7.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain DUF4859 PF16151.5 gi|55377960|ref|YP_135810.1| - 0.0057 16.5 0.1 0.0093 15.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4859) COX2-transmemb PF09125.10 gi|55377960|ref|YP_135810.1| - 0.061 13.1 0.4 0.099 12.4 0.4 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.20 gi|55377961|ref|YP_135811.1| - 2.3e-92 310.1 55.0 2.3e-92 310.1 55.0 2.0 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I CARDB PF07705.11 gi|55377962|ref|YP_135812.1| - 0.0059 16.8 0.3 0.0087 16.3 0.3 1.3 1 0 0 1 1 1 1 CARDB zinc_ribbon_2 PF13240.6 gi|55377963|ref|YP_135813.1| - 1.8e-05 24.3 3.4 2.9e-05 23.6 3.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|55377963|ref|YP_135813.1| - 6.8e-05 22.8 1.0 0.00011 22.1 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55377963|ref|YP_135813.1| - 8.2e-05 21.9 5.2 0.00015 21.1 5.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|55377963|ref|YP_135813.1| - 0.012 16.4 0.1 0.017 15.9 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family zf-C3HC4_3 PF13920.6 gi|55377963|ref|YP_135813.1| - 0.048 13.5 0.0 0.072 13.0 0.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.8 gi|55377963|ref|YP_135813.1| - 0.06 13.2 3.4 0.13 12.1 3.4 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.9 gi|55377963|ref|YP_135813.1| - 0.66 10.1 3.5 1.1 9.4 3.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|55377963|ref|YP_135813.1| - 1.3 9.0 3.2 21 5.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.7 gi|55377964|ref|YP_135814.1| - 1.2e-11 44.5 8.4 1.2e-11 44.5 8.4 2.3 2 0 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55377964|ref|YP_135814.1| - 9.4e-11 40.7 15.1 1.8e-05 23.9 1.5 3.9 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|55377964|ref|YP_135814.1| - 4.6e-09 35.7 15.8 4.4e-05 23.0 0.9 3.4 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|55377964|ref|YP_135814.1| - 5e-07 30.4 8.5 0.0033 18.1 0.4 2.9 3 0 0 3 3 3 2 zinc-ribbon family FHA PF00498.26 gi|55377964|ref|YP_135814.1| - 8.3e-07 29.3 0.0 1.5e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 FHA domain Zn-ribbon_8 PF09723.10 gi|55377964|ref|YP_135814.1| - 0.00022 21.2 14.5 0.15 12.2 0.5 4.4 3 1 2 5 5 5 2 Zinc ribbon domain UPF0547 PF10571.9 gi|55377964|ref|YP_135814.1| - 0.0044 17.1 1.2 0.0044 17.1 1.2 3.5 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|55377964|ref|YP_135814.1| - 0.012 15.6 11.1 0.4 10.7 0.6 3.2 2 1 1 3 3 3 0 zinc-ribbons zinc-ribbon_6 PF10005.9 gi|55377964|ref|YP_135814.1| - 0.023 15.4 2.5 4.3 8.1 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|55377964|ref|YP_135814.1| - 0.031 14.2 9.7 0.041 13.8 0.7 3.9 4 0 0 4 4 3 0 Nudix N-terminal Yop-YscD_cpl PF16697.5 gi|55377964|ref|YP_135814.1| - 0.043 14.1 0.1 0.2 12.0 0.0 2.0 2 0 0 2 2 2 0 Inner membrane component of T3SS, cytoplasmic domain zf-C3HC4_3 PF13920.6 gi|55377964|ref|YP_135814.1| - 0.27 11.1 8.8 1.5 8.7 0.3 3.4 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.6 gi|55377964|ref|YP_135814.1| - 0.29 11.1 2.4 31 4.6 0.0 3.6 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|55377964|ref|YP_135814.1| - 0.31 11.1 11.0 0.32 11.0 0.2 3.2 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rad50_zn_hook PF04423.14 gi|55377964|ref|YP_135814.1| - 0.36 10.7 5.0 7.7 6.4 0.2 2.8 3 0 0 3 3 2 0 Rad50 zinc hook motif IBR PF01485.21 gi|55377964|ref|YP_135814.1| - 0.64 10.3 13.1 27 5.1 6.4 4.2 3 1 0 3 3 3 0 IBR domain, a half RING-finger domain PLATZ PF04640.14 gi|55377964|ref|YP_135814.1| - 0.66 10.6 4.8 2.7 8.7 0.5 2.4 1 1 1 2 2 2 0 PLATZ transcription factor Prok-RING_4 PF14447.6 gi|55377964|ref|YP_135814.1| - 0.7 9.8 10.2 14 5.7 0.1 3.7 4 1 0 4 4 3 0 Prokaryotic RING finger family 4 zf-Di19 PF05605.12 gi|55377964|ref|YP_135814.1| - 1.2 9.5 7.7 9.7 6.6 0.1 3.4 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding OrfB_Zn_ribbon PF07282.11 gi|55377964|ref|YP_135814.1| - 2 8.4 16.7 2 8.4 0.7 3.7 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zinc_ribbon_9 PF14369.6 gi|55377964|ref|YP_135814.1| - 4.4 7.6 23.8 6.3 7.2 0.2 5.1 2 1 3 5 5 5 0 zinc-ribbon PP2C_2 PF13672.6 gi|55377965|ref|YP_135815.1| - 3.5e-11 43.1 0.8 6.1e-11 42.4 0.8 1.4 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|55377965|ref|YP_135815.1| - 1.3e-05 25.0 0.0 9e-05 22.2 0.0 2.5 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|55377965|ref|YP_135815.1| - 3.4e-05 23.8 4.3 0.00018 21.5 4.3 2.0 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.25 gi|55377966|ref|YP_135816.1| - 3.8e-28 98.6 0.0 4.7e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|55377966|ref|YP_135816.1| - 1.7e-15 57.0 0.0 2.1e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.26 gi|55377966|ref|YP_135816.1| - 7.4e-06 26.2 0.0 1.8e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 FHA domain Kinase-like PF14531.6 gi|55377966|ref|YP_135816.1| - 0.0019 17.6 0.0 0.017 14.4 0.0 2.0 2 0 0 2 2 2 1 Kinase-like RIO1 PF01163.22 gi|55377966|ref|YP_135816.1| - 0.0044 16.6 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|55377966|ref|YP_135816.1| - 0.0061 16.5 0.1 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|55377966|ref|YP_135816.1| - 0.19 10.5 0.0 0.29 9.9 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase VWA PF00092.28 gi|55377967|ref|YP_135817.1| - 2.6e-16 60.4 0.0 9e-16 58.6 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|55377967|ref|YP_135817.1| - 9.9e-13 48.7 0.8 6.3e-12 46.1 0.0 2.2 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|55377967|ref|YP_135817.1| - 1e-06 28.8 0.0 2.1e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|55377967|ref|YP_135817.1| - 3.4e-06 26.6 0.0 7.9e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|55377967|ref|YP_135817.1| - 3.9e-05 23.8 0.0 0.00011 22.3 0.0 1.8 1 0 0 1 1 1 1 VWA-like domain (DUF2201) DUF1735 PF08522.10 gi|55377967|ref|YP_135817.1| - 0.045 14.3 0.2 0.1 13.2 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1735) MerT PF02411.15 gi|55377968|ref|YP_135818.1| - 0.57 10.2 7.4 0.18 11.8 3.9 2.0 1 1 0 1 1 1 0 MerT mercuric transport protein DUF3179 PF11376.8 gi|55377969|ref|YP_135819.1| - 5e-99 331.3 0.0 5.8e-99 331.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) TAT_signal PF10518.9 gi|55377969|ref|YP_135819.1| - 0.47 10.4 2.3 2.3 8.2 2.3 2.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Abhydrolase_2 PF02230.16 gi|55377970|ref|YP_135820.1| - 1.7e-21 77.1 0.0 8.4e-21 74.8 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|55377970|ref|YP_135820.1| - 2e-07 30.8 0.0 2.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|55377970|ref|YP_135820.1| - 6.9e-06 25.5 0.2 0.066 12.5 0.0 3.0 2 1 1 3 3 3 2 Serine aminopeptidase, S33 FSH1 PF03959.13 gi|55377970|ref|YP_135820.1| - 0.00019 21.2 0.0 0.00023 20.9 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.20 gi|55377970|ref|YP_135820.1| - 0.00032 20.4 0.0 0.00041 20.1 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|55377970|ref|YP_135820.1| - 0.0072 15.8 0.0 2.2 7.7 0.0 2.4 2 1 1 3 3 3 2 Prolyl oligopeptidase family PE-PPE PF08237.11 gi|55377970|ref|YP_135820.1| - 0.0093 15.5 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 PE-PPE domain Palm_thioest PF02089.15 gi|55377970|ref|YP_135820.1| - 0.057 13.3 0.0 0.061 13.1 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Cutinase PF01083.22 gi|55377970|ref|YP_135820.1| - 0.06 13.3 0.0 0.094 12.7 0.0 1.4 1 1 0 1 1 1 0 Cutinase Abhydrolase_3 PF07859.13 gi|55377970|ref|YP_135820.1| - 0.069 13.0 0.2 0.35 10.7 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold DUF3243 PF11588.8 gi|55377970|ref|YP_135820.1| - 0.18 12.1 0.0 1.2 9.5 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3243) UPF0058 PF01893.16 gi|55377971|ref|YP_135821.1| - 5.7e-21 74.6 0.5 6.5e-21 74.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.12 gi|55377972|ref|YP_135822.1| - 1.6e-40 137.5 0.2 2.1e-40 137.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.6 gi|55377972|ref|YP_135822.1| - 0.024 14.0 0.2 0.046 13.1 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|55377972|ref|YP_135822.1| - 0.039 13.9 0.1 0.084 12.8 0.1 1.6 1 0 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|55377972|ref|YP_135822.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HhH-GPD PF00730.25 gi|55377973|ref|YP_135823.1| - 2.3e-13 50.5 0.0 3.6e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|55377973|ref|YP_135823.1| - 7.1e-05 22.9 0.0 0.00025 21.1 0.0 1.9 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain Acylphosphatase PF00708.18 gi|55377974|ref|YP_135824.1| - 3.7e-25 88.1 0.4 4.1e-25 88.0 0.4 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1918 PF08940.11 gi|55377974|ref|YP_135824.1| - 0.0097 15.5 1.8 0.056 13.1 0.1 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF1918) Carb_kinase PF01256.17 gi|55377975|ref|YP_135825.1| - 5e-44 150.6 0.8 7.2e-44 150.1 0.8 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|55377975|ref|YP_135825.1| - 2.7e-43 147.8 1.2 5.9e-43 146.7 0.2 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|55377975|ref|YP_135825.1| - 1.2e-05 24.9 0.0 2.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MMR_HSR1 PF01926.23 gi|55377976|ref|YP_135826.1| - 4.6e-18 65.4 0.0 8.2e-18 64.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|55377976|ref|YP_135826.1| - 7.1e-11 42.0 0.3 1.9e-10 40.6 0.3 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|55377976|ref|YP_135826.1| - 8.3e-10 38.8 0.2 5.3e-05 23.2 0.1 2.3 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|55377976|ref|YP_135826.1| - 7.7e-07 29.1 0.0 1.4e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|55377976|ref|YP_135826.1| - 1.2e-06 28.2 0.3 0.00028 20.5 0.1 2.2 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|55377976|ref|YP_135826.1| - 6.8e-05 22.4 0.1 0.077 12.5 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B MnmE_helical PF12631.7 gi|55377976|ref|YP_135826.1| - 0.0024 18.1 0.1 0.0034 17.6 0.1 1.2 1 0 0 1 1 1 1 MnmE helical domain Ras PF00071.22 gi|55377976|ref|YP_135826.1| - 0.0029 17.2 0.0 0.029 14.0 0.0 2.1 2 0 0 2 2 2 1 Ras family Arf PF00025.21 gi|55377976|ref|YP_135826.1| - 0.0038 16.7 0.9 0.28 10.6 0.9 2.3 1 1 0 1 1 1 1 ADP-ribosylation factor family AAA_14 PF13173.6 gi|55377976|ref|YP_135826.1| - 0.0069 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain GTP-bdg_M PF16360.5 gi|55377976|ref|YP_135826.1| - 0.0095 16.5 4.4 0.023 15.3 4.4 1.7 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region Roc PF08477.13 gi|55377976|ref|YP_135826.1| - 0.013 15.7 0.0 0.14 12.4 0.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|55377976|ref|YP_135826.1| - 0.016 15.0 0.0 0.75 9.5 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|55377976|ref|YP_135826.1| - 0.016 15.2 0.0 0.42 10.6 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|55377976|ref|YP_135826.1| - 0.019 14.8 0.2 0.13 12.0 0.1 2.0 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|55377976|ref|YP_135826.1| - 0.02 15.5 1.8 0.046 14.3 0.1 2.6 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|55377976|ref|YP_135826.1| - 0.021 15.3 0.0 0.054 14.0 0.0 1.8 1 1 0 1 1 1 0 ABC transporter DUF1949 PF09186.11 gi|55377976|ref|YP_135826.1| - 0.074 12.9 1.0 1.9 8.4 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1949) DUF4604 PF15377.6 gi|55377976|ref|YP_135826.1| - 0.26 11.7 1.9 0.28 11.6 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4604) AAA_23 PF13476.6 gi|55377976|ref|YP_135826.1| - 5 7.6 5.8 6.3 7.3 0.1 2.9 1 1 1 2 2 2 0 AAA domain peroxidase PF00141.23 gi|55377977|ref|YP_135827.1| - 2.9e-90 302.0 0.0 3.1e-51 174.3 0.0 2.2 2 0 0 2 2 2 2 Peroxidase FUN14 PF04930.15 gi|55377978|ref|YP_135828.1| - 1.6e-21 76.5 6.1 1.9e-21 76.3 6.1 1.1 1 0 0 1 1 1 1 FUN14 family SBDS PF01172.18 gi|55377979|ref|YP_135829.1| - 1.2e-19 70.2 0.0 1.8e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|55377979|ref|YP_135829.1| - 1.8e-17 63.4 0.0 3.2e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|55377980|ref|YP_135830.1| - 2.1e-59 200.2 0.0 2.7e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|55377980|ref|YP_135830.1| - 7.6e-14 51.1 0.1 1.6e-13 50.1 0.1 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|55377981|ref|YP_135831.1| - 2.6e-21 75.8 0.0 4.6e-21 75.0 0.0 1.4 2 0 0 2 2 2 1 Rpp14/Pop5 family DUF2391 PF09622.10 gi|55377982|ref|YP_135832.1| - 0.00033 20.1 1.5 0.00046 19.6 1.3 1.4 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) RNase_P_p30 PF01876.16 gi|55377983|ref|YP_135833.1| - 6e-45 153.3 0.0 6.9e-45 153.1 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.17 gi|55377984|ref|YP_135834.1| - 5.2e-30 104.2 0.0 6.6e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 RNA binding Ins145_P3_rec PF08709.11 gi|55377984|ref|YP_135834.1| - 0.12 11.5 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Inositol 1,4,5-trisphosphate/ryanodine receptor DUF1918 PF08940.11 gi|55377985|ref|YP_135835.1| - 0.0023 17.5 0.1 0.0026 17.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) LBR_tudor PF09465.10 gi|55377985|ref|YP_135835.1| - 0.029 14.2 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain Tudor_3 PF18115.1 gi|55377985|ref|YP_135835.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA repair protein Crb2 Tudor domain NUDIX PF00293.28 gi|55377986|ref|YP_135836.1| - 6.1e-16 58.7 0.5 8.6e-16 58.2 0.5 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4838 PF16126.5 gi|55377987|ref|YP_135837.1| - 0.066 12.6 0.0 0.085 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4838) ThiC_Rad_SAM PF01964.18 gi|55377988|ref|YP_135838.1| - 1.2e-192 640.3 0.0 1.4e-192 640.1 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family SBP_bac_11 PF13531.6 gi|55377989|ref|YP_135839.1| - 5.8e-20 72.0 2.9 7.7e-20 71.6 2.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LysR_substrate PF03466.20 gi|55377989|ref|YP_135839.1| - 0.026 13.9 0.1 0.51 9.7 0.1 2.5 2 0 0 2 2 2 0 LysR substrate binding domain SBP_bac_1 PF01547.25 gi|55377989|ref|YP_135839.1| - 0.072 13.0 0.1 4.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|55377990|ref|YP_135840.1| - 7.7e-16 58.4 13.0 7.7e-16 58.4 13.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4212 PF13937.6 gi|55377990|ref|YP_135840.1| - 0.55 10.7 3.8 6.5 7.2 2.8 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4212) ABC2_membrane_5 PF13346.6 gi|55377990|ref|YP_135840.1| - 0.6 9.6 9.6 1.1 8.7 9.6 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein MobB PF03205.14 gi|55377991|ref|YP_135841.1| - 8.1e-28 97.0 0.0 1.5e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MoaE PF02391.17 gi|55377991|ref|YP_135841.1| - 4.6e-22 78.4 0.1 8e-22 77.7 0.1 1.4 1 0 0 1 1 1 1 MoaE protein GTP_EFTU PF00009.27 gi|55377991|ref|YP_135841.1| - 5.9e-05 22.7 0.4 9.7e-05 22.0 0.4 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|55377991|ref|YP_135841.1| - 0.00093 19.3 0.0 0.002 18.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|55377991|ref|YP_135841.1| - 0.001 19.5 0.4 0.025 15.0 0.4 2.5 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|55377991|ref|YP_135841.1| - 0.017 15.7 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter PRK PF00485.18 gi|55377991|ref|YP_135841.1| - 0.027 14.2 0.1 0.045 13.5 0.1 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|55377991|ref|YP_135841.1| - 0.027 14.6 0.0 0.051 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|55377991|ref|YP_135841.1| - 0.035 13.5 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MeaB PF03308.16 gi|55377991|ref|YP_135841.1| - 0.044 12.8 0.1 0.082 11.9 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|55377991|ref|YP_135841.1| - 0.07 13.4 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|55377991|ref|YP_135841.1| - 0.077 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|55377991|ref|YP_135841.1| - 0.082 13.5 0.0 3.2 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|55377991|ref|YP_135841.1| - 0.1 12.5 0.2 6 6.7 0.1 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase DUF3906 PF13046.6 gi|55377991|ref|YP_135841.1| - 0.1 12.7 0.2 0.23 11.6 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) AAA_23 PF13476.6 gi|55377991|ref|YP_135841.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55377991|ref|YP_135841.1| - 6.2 7.0 7.0 17 5.6 3.1 3.0 2 2 0 2 2 2 0 AAA domain MoaC PF01967.21 gi|55377992|ref|YP_135842.1| - 4.4e-48 162.8 4.0 5.3e-48 162.6 4.0 1.0 1 0 0 1 1 1 1 MoaC family MoCF_biosynth PF00994.24 gi|55377993|ref|YP_135843.1| - 6.5e-36 123.1 0.2 8.6e-36 122.7 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Zip PF02535.22 gi|55377993|ref|YP_135843.1| - 2.2 7.4 9.8 2.4 7.3 9.8 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter TRAM PF01938.20 gi|55377994|ref|YP_135844.1| - 1e-10 41.4 2.3 1.5e-10 40.9 2.3 1.3 1 0 0 1 1 1 1 TRAM domain Herpes_DNAp_acc PF04929.12 gi|55377994|ref|YP_135844.1| - 0.29 10.1 2.4 0.37 9.7 2.4 1.1 1 0 0 1 1 1 0 Herpes DNA replication accessory factor HD PF01966.22 gi|55377996|ref|YP_135846.1| - 4.1e-09 36.7 0.8 6.5e-09 36.1 0.8 1.3 1 0 0 1 1 1 1 HD domain HTH_10 PF04967.12 gi|55377997|ref|YP_135847.1| - 1.5e-20 72.8 0.1 2.3e-20 72.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|55377997|ref|YP_135847.1| - 0.0056 16.2 0.0 0.26 10.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|55377997|ref|YP_135847.1| - 0.015 15.2 1.8 0.12 12.3 0.1 3.1 3 1 1 4 4 4 0 MarR family Sigma70_r4 PF04545.16 gi|55377997|ref|YP_135847.1| - 0.018 14.5 0.0 0.077 12.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|55377997|ref|YP_135847.1| - 0.035 13.9 0.2 0.38 10.6 0.1 2.6 2 1 0 2 2 2 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|55377997|ref|YP_135847.1| - 0.085 13.0 0.2 0.44 10.7 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_24 PF13412.6 gi|55377997|ref|YP_135847.1| - 0.12 12.0 0.0 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Rieske PF00355.26 gi|55377999|ref|YP_135849.1| - 1.3e-09 37.8 0.0 1.9e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.6 gi|55378000|ref|YP_135850.1| - 1.2e-44 152.3 0.3 1.2e-44 152.3 0.3 2.6 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|55378000|ref|YP_135850.1| - 6.3e-31 107.7 12.9 5.8e-30 104.5 8.0 3.0 2 1 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|55378000|ref|YP_135850.1| - 1.2e-06 28.7 2.1 1.4e-06 28.5 0.3 2.1 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|55378000|ref|YP_135850.1| - 0.00075 20.0 6.9 0.00075 20.0 6.9 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) Mntp PF02659.15 gi|55378000|ref|YP_135850.1| - 0.099 12.4 0.1 0.099 12.4 0.1 2.5 3 0 0 3 3 3 0 Putative manganese efflux pump UCR_Fe-S_N PF10399.9 gi|55378000|ref|YP_135850.1| - 0.24 10.8 0.1 0.24 10.8 0.1 3.4 4 0 0 4 4 4 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Molybdopterin PF00384.22 gi|55378002|ref|YP_135852.1| - 6.8e-86 288.9 0.0 1.2e-85 288.1 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|55378002|ref|YP_135852.1| - 6.8e-22 77.6 0.0 1.4e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|55378002|ref|YP_135852.1| - 0.024 14.5 3.4 0.045 13.6 3.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.16 gi|55378002|ref|YP_135852.1| - 0.028 14.4 0.3 0.057 13.4 0.3 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|55378002|ref|YP_135852.1| - 0.14 12.4 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.6 gi|55378003|ref|YP_135853.1| - 8.2e-29 99.7 6.2 8.2e-29 99.7 6.2 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55378003|ref|YP_135853.1| - 8.3e-12 45.0 17.2 5.8e-05 23.1 3.8 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55378003|ref|YP_135853.1| - 1.9e-10 41.2 15.3 3.7e-05 24.2 4.2 3.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55378003|ref|YP_135853.1| - 3.6e-07 30.2 19.6 0.0067 16.6 6.2 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55378003|ref|YP_135853.1| - 0.00055 19.9 30.6 0.0047 16.9 2.2 4.2 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|55378003|ref|YP_135853.1| - 0.00073 19.5 27.1 0.016 15.3 1.1 4.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4 PF00037.27 gi|55378003|ref|YP_135853.1| - 0.0009 19.0 29.7 0.012 15.3 2.8 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|55378003|ref|YP_135853.1| - 0.0035 18.0 10.8 0.084 13.6 0.0 3.7 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|55378003|ref|YP_135853.1| - 0.0052 17.2 1.1 0.0052 17.2 1.1 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|55378003|ref|YP_135853.1| - 0.0087 16.6 0.1 0.0087 16.6 0.1 3.8 3 1 0 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|55378003|ref|YP_135853.1| - 0.0087 16.6 19.8 0.3 11.7 0.2 4.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|55378003|ref|YP_135853.1| - 0.024 14.8 2.3 0.024 14.8 2.3 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|55378003|ref|YP_135853.1| - 0.22 12.5 33.4 0.39 11.7 5.7 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|55378003|ref|YP_135853.1| - 5.8 7.9 26.0 5.6 8.0 1.1 4.2 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|55378003|ref|YP_135853.1| - 6.3 7.3 22.2 1.8 9.1 2.9 4.2 2 1 3 5 5 5 0 4Fe-4S dicluster domain EB_dh PF09459.10 gi|55378005|ref|YP_135855.1| - 1.6e-33 116.7 5.2 5.2e-31 108.5 5.2 2.0 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.15 gi|55378006|ref|YP_135856.1| - 3e-11 43.5 0.7 1.2e-10 41.6 0.6 1.9 1 1 0 1 1 1 1 Nitrate reductase delta subunit HEAT_2 PF13646.6 gi|55378008|ref|YP_135858.1| - 4.7e-39 132.7 41.2 9.1e-13 48.4 3.4 3.4 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|55378008|ref|YP_135858.1| - 7.4e-09 35.1 10.5 0.77 10.2 0.2 5.9 6 0 0 6 6 6 3 HEAT repeat Cnd1 PF12717.7 gi|55378008|ref|YP_135858.1| - 6.5e-05 23.0 1.2 0.17 11.9 0.0 4.2 1 1 2 3 3 3 1 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|55378008|ref|YP_135858.1| - 0.0047 17.4 14.3 0.069 13.7 0.3 5.3 6 0 0 6 6 6 1 HEAT-like repeat Adaptin_N PF01602.20 gi|55378008|ref|YP_135858.1| - 0.039 12.5 0.1 0.31 9.5 0.0 2.1 1 1 0 2 2 2 0 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|55378008|ref|YP_135858.1| - 0.041 14.5 0.1 3.6 8.3 0.0 3.0 2 1 1 3 3 3 0 Vacuolar 14 Fab1-binding region DNA_alkylation PF08713.11 gi|55378008|ref|YP_135858.1| - 0.17 11.5 3.4 0.45 10.2 2.2 2.1 1 1 1 2 2 2 0 DNA alkylation repair enzyme ParA PF10609.9 gi|55378009|ref|YP_135859.1| - 2.4e-62 210.6 0.0 3.3e-62 210.1 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|55378009|ref|YP_135859.1| - 3.1e-17 62.2 1.7 6.7e-17 61.1 1.7 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) CbiA PF01656.23 gi|55378009|ref|YP_135859.1| - 6e-13 49.0 0.0 1e-12 48.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|55378009|ref|YP_135859.1| - 8.6e-11 41.9 2.9 2.4e-10 40.4 2.1 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|55378009|ref|YP_135859.1| - 1.8e-06 28.0 0.1 1.9e-05 24.6 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|55378009|ref|YP_135859.1| - 8.6e-05 22.2 0.6 0.0065 16.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|55378009|ref|YP_135859.1| - 0.00015 21.2 1.2 0.00033 20.0 1.2 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|55378009|ref|YP_135859.1| - 0.00056 19.8 0.1 0.038 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|55378009|ref|YP_135859.1| - 0.0017 17.7 0.0 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|55378009|ref|YP_135859.1| - 0.0053 16.0 1.7 0.082 12.1 0.2 2.6 2 1 1 3 3 3 1 Anion-transporting ATPase UPF0126 PF03458.13 gi|55378010|ref|YP_135860.1| - 1.7e-35 120.7 24.7 8.5e-19 67.2 3.4 2.5 3 0 0 3 3 3 2 UPF0126 domain DUF3318 PF11780.8 gi|55378010|ref|YP_135860.1| - 0.22 11.4 2.3 15 5.5 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3318) Virul_fac_BrkB PF03631.15 gi|55378011|ref|YP_135861.1| - 1.6e-35 123.0 23.1 1.9e-35 122.7 23.1 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ABC2_membrane_5 PF13346.6 gi|55378011|ref|YP_135861.1| - 0.43 10.1 12.8 0.091 12.3 6.8 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein Nitrate_red_del PF02613.15 gi|55378012|ref|YP_135862.1| - 2.7e-32 111.6 0.1 3.5e-32 111.3 0.1 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.14 gi|55378013|ref|YP_135863.1| - 1.3e-69 235.2 19.0 2.1e-69 234.6 19.0 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.6 gi|55378014|ref|YP_135864.1| - 2.3e-21 75.8 18.8 4.1e-14 52.5 7.4 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55378014|ref|YP_135864.1| - 3.7e-18 65.9 25.2 1.2e-08 35.4 9.8 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55378014|ref|YP_135864.1| - 1.5e-16 60.3 23.3 6.8e-10 38.9 6.9 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|55378014|ref|YP_135864.1| - 1.4e-14 53.4 34.6 5.4e-08 32.6 4.4 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|55378014|ref|YP_135864.1| - 2.4e-13 49.3 41.5 1.4e-08 34.2 4.3 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|55378014|ref|YP_135864.1| - 5.7e-11 42.4 25.3 2.6e-06 27.5 7.1 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55378014|ref|YP_135864.1| - 8e-11 41.4 31.3 1.8e-05 24.6 2.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|55378014|ref|YP_135864.1| - 3.7e-10 40.1 20.0 4.4e-05 23.8 5.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|55378014|ref|YP_135864.1| - 2.4e-07 31.2 43.3 0.019 15.8 7.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|55378014|ref|YP_135864.1| - 5.5e-06 26.5 34.6 0.0013 19.1 3.3 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|55378014|ref|YP_135864.1| - 2.1e-05 24.6 31.4 0.0017 18.4 2.0 4.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55378014|ref|YP_135864.1| - 6.4e-05 23.4 25.1 0.063 13.8 8.3 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|55378014|ref|YP_135864.1| - 0.00012 22.8 17.0 0.01 16.6 1.5 3.7 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|55378014|ref|YP_135864.1| - 0.028 14.9 1.5 0.028 14.9 1.5 3.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|55378014|ref|YP_135864.1| - 0.038 14.9 31.6 2.4 9.1 3.4 4.3 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|55378014|ref|YP_135864.1| - 0.75 9.6 25.3 0.74 9.6 4.6 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.22 gi|55378015|ref|YP_135865.1| - 2.4e-55 188.2 0.0 5e-55 187.2 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|55378015|ref|YP_135865.1| - 4.4e-24 84.6 0.1 1.1e-23 83.4 0.1 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|55378015|ref|YP_135865.1| - 1.8e-12 47.0 1.0 4.3e-12 45.8 1.0 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|55378015|ref|YP_135865.1| - 0.014 15.2 3.9 0.014 15.2 3.9 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Ferredoxin_N PF16947.5 gi|55378016|ref|YP_135866.1| - 6.6e-35 119.0 1.4 7.7e-35 118.8 1.4 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding SHOCT PF09851.9 gi|55378016|ref|YP_135866.1| - 0.12 12.1 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Short C-terminal domain HTH_10 PF04967.12 gi|55378017|ref|YP_135867.1| - 6.9e-19 67.4 0.3 1.2e-18 66.6 0.3 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|55378017|ref|YP_135867.1| - 0.0011 19.1 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase MarR_2 PF12802.7 gi|55378017|ref|YP_135867.1| - 0.0024 17.7 0.1 0.0085 16.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|55378017|ref|YP_135867.1| - 0.0078 15.8 0.0 0.02 14.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding BAT PF15915.5 gi|55378017|ref|YP_135867.1| - 0.015 15.1 2.5 0.033 14.1 2.5 1.6 1 1 0 1 1 1 0 GAF and HTH_10 associated domain PuR_N PF09182.10 gi|55378017|ref|YP_135867.1| - 0.016 15.1 0.0 0.58 10.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal HTH_1 PF00126.27 gi|55378017|ref|YP_135867.1| - 0.024 14.6 0.1 0.052 13.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 gi|55378017|ref|YP_135867.1| - 0.082 12.8 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|55378017|ref|YP_135867.1| - 0.1 12.7 0.1 0.23 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF134 PF02001.16 gi|55378017|ref|YP_135867.1| - 0.11 13.0 0.0 0.19 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF134 P22_Cro PF14549.6 gi|55378017|ref|YP_135867.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro BatA PF07584.11 gi|55378018|ref|YP_135868.1| - 5.2e-17 62.0 9.0 5.7e-17 61.9 8.0 1.6 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|55378018|ref|YP_135868.1| - 8.8e-07 29.6 0.3 2.2e-06 28.3 0.3 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF898 PF05987.13 gi|55378018|ref|YP_135868.1| - 0.0056 15.8 0.4 0.0082 15.2 0.4 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF898) DUF58 PF01882.18 gi|55378018|ref|YP_135868.1| - 0.011 16.0 0.2 0.042 14.1 0.2 1.9 1 0 0 1 1 1 0 Protein of unknown function DUF58 VWA PF00092.28 gi|55378019|ref|YP_135869.1| - 1.7e-20 74.0 0.6 2.3e-18 67.1 0.1 2.5 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|55378019|ref|YP_135869.1| - 8.8e-15 55.3 0.3 8.8e-15 55.3 0.3 2.2 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|55378019|ref|YP_135869.1| - 2.1e-08 34.3 0.1 6.9e-08 32.6 0.1 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|55378019|ref|YP_135869.1| - 2.4e-07 30.4 0.6 1.4e-05 24.6 0.0 2.8 2 1 0 3 3 3 1 VWA domain containing CoxE-like protein Big_3_5 PF16640.5 gi|55378019|ref|YP_135869.1| - 6.1e-05 23.1 0.3 6.1e-05 23.1 0.3 3.7 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 3) Glyco_hydro_42M PF08532.10 gi|55378019|ref|YP_135869.1| - 0.12 11.8 0.2 8.3 5.8 0.0 2.9 3 0 0 3 3 3 0 Beta-galactosidase trimerisation domain PKD PF00801.20 gi|55378019|ref|YP_135869.1| - 0.77 9.6 4.3 8.2 6.4 0.0 3.6 4 0 0 4 4 4 0 PKD domain BatA PF07584.11 gi|55378019|ref|YP_135869.1| - 1 9.8 6.9 8.8 6.8 6.9 2.2 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal ATG16 PF08614.11 gi|55378020|ref|YP_135870.1| - 3.3e-13 50.3 45.3 1.5e-09 38.3 31.3 2.1 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) DUF1664 PF07889.12 gi|55378020|ref|YP_135870.1| - 1.4e-11 44.5 19.8 1.8e-08 34.5 6.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|55378020|ref|YP_135870.1| - 1.9e-11 44.2 36.2 0.0024 18.2 4.4 5.1 2 2 2 5 5 5 3 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|55378020|ref|YP_135870.1| - 1.7e-09 38.0 41.3 0.00016 22.1 4.4 4.1 1 1 3 4 4 3 3 Cell division protein ZapB TPR_MLP1_2 PF07926.12 gi|55378020|ref|YP_135870.1| - 9.4e-09 35.4 38.2 3.8e-06 27.0 24.9 2.7 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein PspA_IM30 PF04012.12 gi|55378020|ref|YP_135870.1| - 5.4e-08 32.7 23.3 0.0032 17.1 0.4 3.8 1 1 3 4 4 4 2 PspA/IM30 family CENP-F_leu_zip PF10473.9 gi|55378020|ref|YP_135870.1| - 6.6e-08 32.7 39.2 7.3e-05 22.8 14.2 3.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.9 gi|55378020|ref|YP_135870.1| - 6.7e-08 32.7 30.5 0.00097 19.4 8.0 3.6 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.9 gi|55378020|ref|YP_135870.1| - 7.8e-08 31.8 24.1 1.4e-05 24.3 7.5 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 bZIP_1 PF00170.21 gi|55378020|ref|YP_135870.1| - 8.5e-08 32.2 26.1 0.0019 18.2 1.1 5.3 1 1 4 5 5 5 3 bZIP transcription factor DivIC PF04977.15 gi|55378020|ref|YP_135870.1| - 1e-07 31.6 42.8 0.0031 17.3 3.7 5.3 1 1 4 5 5 5 3 Septum formation initiator Spc7 PF08317.11 gi|55378020|ref|YP_135870.1| - 1.1e-07 31.1 36.6 8.9e-05 21.5 14.1 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein GAS PF13851.6 gi|55378020|ref|YP_135870.1| - 1.3e-07 31.2 28.8 3.2e-05 23.4 16.6 2.2 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding ADIP PF11559.8 gi|55378020|ref|YP_135870.1| - 2.6e-07 30.8 35.8 1.1e-05 25.6 9.6 2.5 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding ERM PF00769.19 gi|55378020|ref|YP_135870.1| - 3.4e-07 30.3 18.2 3.4e-07 30.3 18.2 2.2 1 1 1 2 2 2 1 Ezrin/radixin/moesin family TMF_DNA_bd PF12329.8 gi|55378020|ref|YP_135870.1| - 3.6e-07 30.1 39.1 6e-05 23.0 6.3 4.1 1 1 3 4 4 4 2 TATA element modulatory factor 1 DNA binding EzrA PF06160.12 gi|55378020|ref|YP_135870.1| - 4.1e-07 28.6 23.4 6.2e-07 28.0 23.4 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin_1 PF12718.7 gi|55378020|ref|YP_135870.1| - 4.4e-07 30.1 45.1 0.00031 20.9 27.0 2.8 1 1 1 2 2 2 2 Tropomyosin like DUF5082 PF16888.5 gi|55378020|ref|YP_135870.1| - 5.8e-07 29.8 16.2 5.8e-07 29.8 16.2 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF5082) DUF4201 PF13870.6 gi|55378020|ref|YP_135870.1| - 6.1e-07 29.3 24.2 6.4e-05 22.8 18.4 3.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4201) bZIP_2 PF07716.15 gi|55378020|ref|YP_135870.1| - 7e-07 29.2 30.7 0.071 13.2 1.1 6.3 1 1 4 6 6 6 4 Basic region leucine zipper YabA PF06156.13 gi|55378020|ref|YP_135870.1| - 1.7e-06 28.6 26.7 0.0019 18.8 2.8 4.0 1 1 2 3 3 3 1 Initiation control protein YabA WXG100 PF06013.12 gi|55378020|ref|YP_135870.1| - 4.5e-06 26.8 21.7 0.13 12.5 0.1 5.0 2 2 2 5 5 5 1 Proteins of 100 residues with WXG Prefoldin_2 PF01920.20 gi|55378020|ref|YP_135870.1| - 6.6e-06 26.0 33.8 0.0069 16.3 4.5 4.5 1 1 3 4 4 4 2 Prefoldin subunit Lebercilin PF15619.6 gi|55378020|ref|YP_135870.1| - 6.8e-06 25.9 36.5 0.00039 20.1 27.3 2.5 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease Mod_r PF07200.13 gi|55378020|ref|YP_135870.1| - 6.9e-06 26.2 33.1 0.007 16.5 9.0 3.2 1 1 2 3 3 3 2 Modifier of rudimentary (Mod(r)) protein TolA_bind_tri PF16331.5 gi|55378020|ref|YP_135870.1| - 7.5e-06 25.9 44.3 0.00046 20.2 9.4 3.9 1 1 3 4 4 4 2 TolA binding protein trimerisation DUF4200 PF13863.6 gi|55378020|ref|YP_135870.1| - 8e-06 26.2 26.9 9.9e-05 22.7 12.8 3.2 1 1 2 3 3 3 2 Domain of unknown function (DUF4200) Laminin_II PF06009.12 gi|55378020|ref|YP_135870.1| - 9.9e-06 25.6 24.8 0.014 15.4 10.2 2.6 1 1 2 3 3 3 3 Laminin Domain II TMF_TATA_bd PF12325.8 gi|55378020|ref|YP_135870.1| - 1e-05 25.7 35.6 0.0053 17.0 2.0 3.7 1 1 2 3 3 3 2 TATA element modulatory factor 1 TATA binding Filament PF00038.21 gi|55378020|ref|YP_135870.1| - 1.3e-05 25.0 34.0 0.00046 19.9 13.5 2.3 1 1 1 2 2 2 2 Intermediate filament protein AAA_13 PF13166.6 gi|55378020|ref|YP_135870.1| - 1.3e-05 24.1 23.6 2.8e-05 23.0 23.6 1.5 1 1 0 1 1 1 1 AAA domain Uso1_p115_C PF04871.13 gi|55378020|ref|YP_135870.1| - 1.3e-05 25.5 39.7 0.00025 21.4 24.7 3.1 1 1 2 3 3 3 1 Uso1 / p115 like vesicle tethering protein, C terminal region FPP PF05911.11 gi|55378020|ref|YP_135870.1| - 1.4e-05 23.6 31.2 1.4e-05 23.6 31.2 1.4 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil MscS_porin PF12795.7 gi|55378020|ref|YP_135870.1| - 1.7e-05 24.5 44.3 0.0036 16.9 15.5 2.3 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain HrpB7 PF09486.10 gi|55378020|ref|YP_135870.1| - 2.2e-05 24.9 27.1 0.00064 20.1 14.0 2.5 1 1 1 2 2 2 2 Bacterial type III secretion protein (HrpB7) IFT57 PF10498.9 gi|55378020|ref|YP_135870.1| - 2.4e-05 23.5 20.3 2.4e-05 23.5 20.3 2.0 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 KASH_CCD PF14662.6 gi|55378020|ref|YP_135870.1| - 2.5e-05 24.2 36.6 9e-05 22.4 36.2 1.9 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Ax_dynein_light PF10211.9 gi|55378020|ref|YP_135870.1| - 2.6e-05 24.3 31.7 0.07 13.1 1.5 3.7 1 1 2 3 3 3 2 Axonemal dynein light chain DUF641 PF04859.12 gi|55378020|ref|YP_135870.1| - 2.8e-05 24.4 23.2 0.022 15.1 6.8 3.1 1 1 2 3 3 3 2 Plant protein of unknown function (DUF641) Fib_alpha PF08702.10 gi|55378020|ref|YP_135870.1| - 2.9e-05 24.3 25.0 0.00095 19.4 8.8 2.5 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Leu_zip PF15294.6 gi|55378020|ref|YP_135870.1| - 3.3e-05 23.5 27.7 0.0056 16.2 9.2 2.0 1 1 1 2 2 2 2 Leucine zipper Cnn_1N PF07989.11 gi|55378020|ref|YP_135870.1| - 3.5e-05 23.9 37.2 0.0064 16.6 6.2 4.8 1 1 3 4 4 4 3 Centrosomin N-terminal motif 1 Tektin PF03148.14 gi|55378020|ref|YP_135870.1| - 3.8e-05 22.6 33.9 0.0004 19.3 25.2 2.6 1 1 2 3 3 3 2 Tektin family Jnk-SapK_ap_N PF09744.9 gi|55378020|ref|YP_135870.1| - 4e-05 23.9 37.6 0.0043 17.3 16.9 2.7 1 1 2 3 3 3 1 JNK_SAPK-associated protein-1 Fez1 PF06818.15 gi|55378020|ref|YP_135870.1| - 4.3e-05 24.1 31.5 0.0078 16.7 17.9 2.6 1 1 1 2 2 2 1 Fez1 DUF4407 PF14362.6 gi|55378020|ref|YP_135870.1| - 4.3e-05 23.0 27.9 0.0048 16.3 19.6 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) DUF724 PF05266.14 gi|55378020|ref|YP_135870.1| - 4.5e-05 23.4 21.8 0.0015 18.4 6.9 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF724) APG6_N PF17675.1 gi|55378020|ref|YP_135870.1| - 5.5e-05 23.7 25.8 5.5e-05 23.7 25.8 3.1 1 1 2 3 3 3 2 Apg6 coiled-coil region XhlA PF10779.9 gi|55378020|ref|YP_135870.1| - 5.6e-05 23.3 33.3 0.03 14.5 4.3 4.2 1 1 4 5 5 5 3 Haemolysin XhlA Prefoldin PF02996.17 gi|55378020|ref|YP_135870.1| - 6.1e-05 22.9 31.3 0.045 13.7 1.5 5.0 1 1 4 5 5 5 2 Prefoldin subunit Laminin_I PF06008.14 gi|55378020|ref|YP_135870.1| - 6.2e-05 22.8 20.3 0.00017 21.4 11.0 2.9 1 1 1 3 3 3 2 Laminin Domain I CCDC144C PF14915.6 gi|55378020|ref|YP_135870.1| - 7.2e-05 22.1 31.6 9.7e-05 21.6 24.4 2.1 1 1 1 2 2 2 1 CCDC144C protein coiled-coil region LPP PF04728.13 gi|55378020|ref|YP_135870.1| - 7.8e-05 23.0 30.9 0.036 14.5 2.5 5.3 3 1 2 5 5 5 2 Lipoprotein leucine-zipper DUF2205 PF10224.9 gi|55378020|ref|YP_135870.1| - 8.3e-05 22.5 5.7 8.3e-05 22.5 5.7 3.8 1 1 2 3 3 2 1 Short coiled-coil protein Swi5 PF07061.11 gi|55378020|ref|YP_135870.1| - 8.4e-05 22.6 27.0 0.29 11.2 1.3 4.4 1 1 2 3 3 3 1 Swi5 DUF812 PF05667.11 gi|55378020|ref|YP_135870.1| - 8.8e-05 21.6 34.6 0.0086 15.0 8.0 2.8 1 1 2 3 3 3 3 Protein of unknown function (DUF812) CLZ PF16526.5 gi|55378020|ref|YP_135870.1| - 9.6e-05 22.7 30.6 0.034 14.5 5.5 3.7 1 1 3 4 4 4 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HMMR_N PF15905.5 gi|55378020|ref|YP_135870.1| - 0.00011 21.8 34.2 0.00048 19.7 22.2 2.0 1 1 1 2 2 2 1 Hyaluronan mediated motility receptor N-terminal Tropomyosin PF00261.20 gi|55378020|ref|YP_135870.1| - 0.00012 21.6 34.9 0.00017 21.0 34.9 1.3 1 0 0 1 1 1 1 Tropomyosin HAUS-augmin3 PF14932.6 gi|55378020|ref|YP_135870.1| - 0.00012 21.8 29.5 0.00073 19.2 15.2 2.8 1 1 2 3 3 3 1 HAUS augmin-like complex subunit 3 COG2 PF06148.11 gi|55378020|ref|YP_135870.1| - 0.00013 22.1 24.0 0.015 15.4 10.4 3.1 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 UPF0242 PF06785.11 gi|55378020|ref|YP_135870.1| - 0.00019 21.6 38.4 0.016 15.3 23.9 2.7 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus Spc24 PF08286.11 gi|55378020|ref|YP_135870.1| - 0.00021 21.5 41.5 0.041 14.1 5.4 4.3 1 1 3 4 4 4 2 Spc24 subunit of Ndc80 CALCOCO1 PF07888.11 gi|55378020|ref|YP_135870.1| - 0.00022 20.2 35.4 0.00023 20.2 11.2 2.0 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like DUF3450 PF11932.8 gi|55378020|ref|YP_135870.1| - 0.00025 20.4 35.7 0.094 12.0 20.8 3.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) DUF16 PF01519.16 gi|55378020|ref|YP_135870.1| - 0.00029 21.3 25.3 0.037 14.5 9.8 3.2 1 1 2 3 3 3 2 Protein of unknown function DUF16 BRE1 PF08647.11 gi|55378020|ref|YP_135870.1| - 0.00029 20.8 4.7 0.00029 20.8 4.7 2.9 1 1 0 2 2 2 1 BRE1 E3 ubiquitin ligase DUF4472 PF14739.6 gi|55378020|ref|YP_135870.1| - 0.00029 21.5 5.7 0.00029 21.5 5.7 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4472) DUF4618 PF15397.6 gi|55378020|ref|YP_135870.1| - 0.00032 20.2 26.4 0.021 14.3 1.6 3.2 1 1 2 3 3 3 2 Domain of unknown function (DUF4618) Golgin_A5 PF09787.9 gi|55378020|ref|YP_135870.1| - 0.00033 20.2 40.3 0.057 12.9 16.6 2.1 1 1 1 2 2 2 2 Golgin subfamily A member 5 NPV_P10 PF05531.12 gi|55378020|ref|YP_135870.1| - 0.00038 20.9 31.7 0.38 11.2 3.5 4.3 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Macoilin PF09726.9 gi|55378020|ref|YP_135870.1| - 0.00038 19.2 28.8 0.0023 16.6 28.8 1.8 1 1 0 1 1 1 1 Macoilin family HemX PF04375.14 gi|55378020|ref|YP_135870.1| - 0.00039 19.8 29.6 0.022 14.1 7.6 2.9 1 1 2 3 3 3 3 HemX, putative uroporphyrinogen-III C-methyltransferase Shugoshin_N PF07558.11 gi|55378020|ref|YP_135870.1| - 0.00043 20.1 16.0 0.14 12.1 0.6 4.1 3 1 0 3 3 3 1 Shugoshin N-terminal coiled-coil region TMPIT PF07851.13 gi|55378020|ref|YP_135870.1| - 0.00055 19.3 20.4 0.017 14.4 4.7 2.1 1 1 1 2 2 2 2 TMPIT-like protein HALZ PF02183.18 gi|55378020|ref|YP_135870.1| - 0.00055 20.1 27.3 0.41 10.9 0.5 4.8 2 1 2 4 4 4 1 Homeobox associated leucine zipper Prominin PF05478.11 gi|55378020|ref|YP_135870.1| - 0.00069 17.7 19.1 0.0062 14.6 8.2 2.4 1 1 1 2 2 2 1 Prominin DHR10 PF18595.1 gi|55378020|ref|YP_135870.1| - 0.00073 19.6 41.0 0.0061 16.6 17.2 2.9 1 1 2 3 3 3 1 Designed helical repeat protein 10 domain FliD_C PF07195.12 gi|55378020|ref|YP_135870.1| - 0.00079 18.9 20.4 0.054 12.9 4.5 3.3 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus KxDL PF10241.9 gi|55378020|ref|YP_135870.1| - 0.00088 19.5 19.2 0.035 14.4 5.1 3.8 1 1 2 3 3 3 1 Uncharacterized conserved protein DUF2353 PF09789.9 gi|55378020|ref|YP_135870.1| - 0.0009 18.7 34.2 0.00097 18.6 11.6 2.1 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) SYCE1 PF15233.6 gi|55378020|ref|YP_135870.1| - 0.0009 19.3 12.8 0.0009 19.3 12.8 2.4 1 1 1 2 2 1 1 Synaptonemal complex central element protein 1 MAD PF05557.13 gi|55378020|ref|YP_135870.1| - 0.0011 17.5 33.9 0.0019 16.6 33.9 1.4 1 1 0 1 1 1 1 Mitotic checkpoint protein SlyX PF04102.12 gi|55378020|ref|YP_135870.1| - 0.0011 19.5 41.5 0.0035 17.9 10.5 4.2 1 1 3 4 4 4 2 SlyX BST2 PF16716.5 gi|55378020|ref|YP_135870.1| - 0.0013 19.3 30.4 1.1 9.9 13.8 4.2 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 ABC_tran_CTD PF16326.5 gi|55378020|ref|YP_135870.1| - 0.0013 18.9 36.8 0.014 15.6 3.4 4.7 1 1 4 5 5 5 1 ABC transporter C-terminal domain Phage_GP20 PF06810.11 gi|55378020|ref|YP_135870.1| - 0.0014 18.4 37.8 0.0045 16.8 7.3 4.0 1 1 3 4 4 4 2 Phage minor structural protein GP20 Syntaxin-6_N PF09177.11 gi|55378020|ref|YP_135870.1| - 0.0015 19.1 33.7 0.13 12.8 8.6 3.7 1 1 2 3 3 3 1 Syntaxin 6, N-terminal DUF948 PF06103.11 gi|55378020|ref|YP_135870.1| - 0.0017 18.6 20.9 0.14 12.4 6.1 3.3 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) HOOK PF05622.12 gi|55378020|ref|YP_135870.1| - 0.0021 16.3 38.4 0.046 11.9 24.3 2.1 1 1 1 2 2 2 2 HOOK protein Lectin_N PF03954.14 gi|55378020|ref|YP_135870.1| - 0.0021 17.8 22.7 0.26 11.0 2.3 3.0 1 1 2 3 3 3 2 Hepatic lectin, N-terminal domain TACC_C PF05010.14 gi|55378020|ref|YP_135870.1| - 0.0025 17.7 24.8 0.018 14.8 11.8 2.4 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF745 PF05335.13 gi|55378020|ref|YP_135870.1| - 0.003 17.3 19.6 0.015 15.0 9.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF745) FapA PF03961.13 gi|55378020|ref|YP_135870.1| - 0.0032 16.1 21.7 0.069 11.7 5.8 2.1 1 1 1 2 2 2 2 Flagellar Assembly Protein A TSC22 PF01166.18 gi|55378020|ref|YP_135870.1| - 0.0034 17.7 32.9 0.082 13.2 2.6 5.2 1 1 3 5 5 4 2 TSC-22/dip/bun family HIP1_clath_bdg PF16515.5 gi|55378020|ref|YP_135870.1| - 0.0035 17.9 33.9 0.042 14.5 17.2 3.2 2 1 0 2 2 2 1 Clathrin-binding domain of Huntingtin-interacting protein 1 zf-C4H2 PF10146.9 gi|55378020|ref|YP_135870.1| - 0.0041 17.4 27.7 0.014 15.7 10.5 2.0 1 1 1 2 2 2 1 Zinc finger-containing protein Rab5-bind PF09311.11 gi|55378020|ref|YP_135870.1| - 0.0042 16.5 33.8 0.092 12.1 11.1 2.4 1 1 1 2 2 2 2 Rabaptin-like protein Wtap PF17098.5 gi|55378020|ref|YP_135870.1| - 0.0044 17.0 31.2 0.22 11.4 9.2 3.8 1 1 2 4 4 4 1 WTAP/Mum2p family AIP3 PF03915.13 gi|55378020|ref|YP_135870.1| - 0.005 16.0 24.2 0.0073 15.4 24.2 1.2 1 0 0 1 1 1 1 Actin interacting protein 3 Myosin_tail_1 PF01576.19 gi|55378020|ref|YP_135870.1| - 0.0052 14.7 41.7 0.031 12.1 41.7 2.2 1 1 0 1 1 1 1 Myosin tail DUF4795 PF16043.5 gi|55378020|ref|YP_135870.1| - 0.0055 16.3 29.3 33 4.0 29.3 3.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) SHE3 PF17078.5 gi|55378020|ref|YP_135870.1| - 0.006 16.3 30.4 0.049 13.4 30.4 2.2 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 DUF4686 PF15742.5 gi|55378020|ref|YP_135870.1| - 0.0064 15.7 34.7 0.042 13.0 34.7 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4686) RTBV_P46 PF06216.11 gi|55378020|ref|YP_135870.1| - 0.0065 15.4 3.9 0.0082 15.1 0.7 2.1 2 0 0 2 2 2 1 Rice tungro bacilliform virus P46 protein Seryl_tRNA_N PF02403.22 gi|55378020|ref|YP_135870.1| - 0.0071 16.6 25.4 0.052 13.8 11.0 3.5 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Exonuc_VII_L PF02601.15 gi|55378020|ref|YP_135870.1| - 0.0073 15.9 21.8 0.19 11.2 21.8 2.0 1 1 0 1 1 1 1 Exonuclease VII, large subunit Fmp27_WPPW PF10359.9 gi|55378020|ref|YP_135870.1| - 0.0088 14.9 24.6 0.18 10.7 8.3 2.4 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain RasGAP_C PF03836.15 gi|55378020|ref|YP_135870.1| - 0.009 16.2 23.4 1.1 9.3 7.5 3.4 1 1 1 2 2 2 0 RasGAP C-terminus Tnp_22_trimer PF17489.2 gi|55378020|ref|YP_135870.1| - 0.0094 15.9 1.6 0.0094 15.9 1.6 3.9 2 1 3 5 5 3 1 L1 transposable element trimerization domain Sipho_Gp157 PF05565.11 gi|55378020|ref|YP_135870.1| - 0.0096 15.9 22.6 0.025 14.6 7.5 2.5 1 1 1 2 2 2 1 Siphovirus Gp157 DUF2730 PF10805.8 gi|55378020|ref|YP_135870.1| - 0.01 15.9 21.4 0.77 9.9 3.3 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF2730) DUF3584 PF12128.8 gi|55378020|ref|YP_135870.1| - 0.01 13.4 37.3 0.023 12.3 37.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Sec2p PF06428.11 gi|55378020|ref|YP_135870.1| - 0.011 15.7 35.3 0.053 13.5 5.8 4.0 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p YkyA PF10368.9 gi|55378020|ref|YP_135870.1| - 0.011 15.5 29.3 0.018 14.7 22.0 2.5 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Cep57_MT_bd PF06657.13 gi|55378020|ref|YP_135870.1| - 0.011 16.2 27.3 0.086 13.3 0.7 4.3 1 1 3 4 4 4 0 Centrosome microtubule-binding domain of Cep57 Cep57_CLD PF14073.6 gi|55378020|ref|YP_135870.1| - 0.011 15.7 29.4 0.033 14.2 22.8 2.2 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 CC2-LZ PF16516.5 gi|55378020|ref|YP_135870.1| - 0.012 16.0 27.7 0.57 10.6 5.7 3.9 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Taxilin PF09728.9 gi|55378020|ref|YP_135870.1| - 0.013 14.7 29.1 0.074 12.2 17.7 3.0 1 1 1 2 2 2 0 Myosin-like coiled-coil protein DUF2968 PF11180.8 gi|55378020|ref|YP_135870.1| - 0.016 14.9 32.9 0.93 9.1 0.3 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF2968) CENP-H PF05837.12 gi|55378020|ref|YP_135870.1| - 0.017 15.5 32.0 0.11 12.9 3.7 3.3 1 1 2 3 3 3 0 Centromere protein H (CENP-H) DUF4988 PF16378.5 gi|55378020|ref|YP_135870.1| - 0.018 14.7 1.3 0.018 14.7 1.3 3.9 1 1 3 4 4 4 0 Domain of unknown function DUF3552 PF12072.8 gi|55378020|ref|YP_135870.1| - 0.018 14.4 39.9 2.9e+03 -2.5 39.9 2.5 1 1 0 1 1 0 0 Domain of unknown function (DUF3552) Nup54 PF13874.6 gi|55378020|ref|YP_135870.1| - 0.019 15.1 2.5 0.019 15.1 2.5 3.0 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 SKA1 PF07160.12 gi|55378020|ref|YP_135870.1| - 0.02 14.7 18.9 0.065 13.1 2.3 2.9 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 RmuC PF02646.16 gi|55378020|ref|YP_135870.1| - 0.02 14.0 20.0 0.59 9.2 0.6 3.2 1 1 2 3 3 3 0 RmuC family OmpH PF03938.14 gi|55378020|ref|YP_135870.1| - 0.023 15.0 29.4 1.8e+04 -5.8 29.4 3.1 1 1 0 1 1 0 0 Outer membrane protein (OmpH-like) DivIVA PF05103.13 gi|55378020|ref|YP_135870.1| - 0.024 14.7 28.0 0.11 12.6 12.8 3.0 1 1 2 3 3 3 0 DivIVA protein Sec34 PF04136.15 gi|55378020|ref|YP_135870.1| - 0.025 14.4 26.3 0.71 9.7 4.5 3.3 1 1 3 4 4 4 0 Sec34-like family ApoO PF09769.9 gi|55378020|ref|YP_135870.1| - 0.026 14.5 8.3 21 5.1 0.0 3.8 1 1 1 2 2 2 0 Apolipoprotein O JIP_LZII PF16471.5 gi|55378020|ref|YP_135870.1| - 0.026 14.7 39.2 1 9.6 9.9 4.5 1 1 4 5 5 5 0 JNK-interacting protein leucine zipper II Spectrin PF00435.21 gi|55378020|ref|YP_135870.1| - 0.033 14.7 28.4 0.028 14.9 13.2 3.3 1 1 2 3 3 3 0 Spectrin repeat STAT_alpha PF01017.20 gi|55378020|ref|YP_135870.1| - 0.042 13.7 28.2 0.045 13.6 2.9 3.1 1 1 2 3 3 3 0 STAT protein, all-alpha domain COG5 PF10392.9 gi|55378020|ref|YP_135870.1| - 0.05 13.8 14.9 0.43 10.7 5.2 2.9 1 1 2 3 3 3 0 Golgi transport complex subunit 5 HSBP1 PF06825.12 gi|55378020|ref|YP_135870.1| - 0.051 13.4 27.8 0.82 9.6 2.7 5.1 1 1 4 5 5 4 0 Heat shock factor binding protein 1 DUF4140 PF13600.6 gi|55378020|ref|YP_135870.1| - 0.06 13.8 37.2 1.8e+04 -15.8 37.2 4.9 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) Uds1 PF15456.6 gi|55378020|ref|YP_135870.1| - 0.065 13.4 27.4 4.3 7.5 9.1 3.9 1 1 2 3 3 3 0 Up-regulated During Septation Cast PF10174.9 gi|55378020|ref|YP_135870.1| - 0.066 11.4 32.8 0.15 10.3 23.6 2.1 1 1 1 2 2 2 0 RIM-binding protein of the cytomatrix active zone MCPsignal PF00015.21 gi|55378020|ref|YP_135870.1| - 0.071 12.9 11.8 0.023 14.5 4.7 2.4 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain COG6 PF06419.11 gi|55378020|ref|YP_135870.1| - 0.073 11.3 27.6 0.29 9.3 2.3 3.0 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF4094 PF13334.6 gi|55378020|ref|YP_135870.1| - 0.074 13.5 1.5 0.074 13.5 1.5 3.4 1 1 2 3 3 2 0 Domain of unknown function (DUF4094) DASH_Hsk3 PF08227.11 gi|55378020|ref|YP_135870.1| - 0.074 13.4 24.7 0.081 13.3 2.3 5.3 2 2 3 6 6 4 0 DASH complex subunit Hsk3 like GrpE PF01025.19 gi|55378020|ref|YP_135870.1| - 0.075 12.7 31.8 0.053 13.2 3.0 3.8 1 1 2 3 3 3 0 GrpE FH2 PF02181.23 gi|55378020|ref|YP_135870.1| - 0.075 12.1 18.8 0.31 10.1 5.5 2.1 1 1 1 2 2 2 0 Formin Homology 2 Domain THOC7 PF05615.13 gi|55378020|ref|YP_135870.1| - 0.076 13.3 32.5 0.2 11.9 10.8 3.7 1 1 2 3 3 3 0 Tho complex subunit 7 PRKG1_interact PF15898.5 gi|55378020|ref|YP_135870.1| - 0.085 13.8 32.7 1.2 10.0 10.1 2.9 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain DUF1043 PF06295.12 gi|55378020|ref|YP_135870.1| - 0.087 12.8 22.3 1.9 8.5 12.9 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) Vac_Fusion PF02346.16 gi|55378020|ref|YP_135870.1| - 0.096 12.3 6.0 0.77 9.4 0.2 3.3 2 1 1 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 PI3K_P85_iSH2 PF16454.5 gi|55378020|ref|YP_135870.1| - 0.099 12.2 26.0 0.031 13.9 19.1 2.9 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain NYD-SP28_assoc PF14775.6 gi|55378020|ref|YP_135870.1| - 0.1 12.7 21.2 0.58 10.3 0.9 4.9 2 1 2 5 5 4 0 Sperm tail C-terminal domain DUF4600 PF15372.6 gi|55378020|ref|YP_135870.1| - 0.12 12.9 24.4 0.15 12.5 10.2 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4600) Fungal_TACC PF12709.7 gi|55378020|ref|YP_135870.1| - 0.14 12.6 28.0 1.3 9.5 1.2 5.2 1 1 3 5 5 5 0 Fungal Transforming acidic coiled-coil (TACC) proteins Vps5 PF09325.10 gi|55378020|ref|YP_135870.1| - 0.14 11.6 20.6 1.1 8.7 1.2 3.2 1 1 2 3 3 3 0 Vps5 C terminal like Pox_F11 PF04943.12 gi|55378020|ref|YP_135870.1| - 0.15 11.1 4.4 0.19 10.8 4.4 1.1 1 0 0 1 1 1 0 Poxvirus F11 protein APG17 PF04108.12 gi|55378020|ref|YP_135870.1| - 0.16 11.1 29.3 0.07 12.2 25.0 1.9 1 1 0 1 1 1 0 Autophagy protein Apg17 Bacillus_HBL PF05791.11 gi|55378020|ref|YP_135870.1| - 0.16 11.8 22.5 0.65 9.8 8.2 2.6 1 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) MctB PF11382.8 gi|55378020|ref|YP_135870.1| - 0.17 11.5 35.5 0.042 13.6 4.4 4.6 1 1 3 4 4 3 0 Copper transport outer membrane protein, MctB CCDC106 PF15794.5 gi|55378020|ref|YP_135870.1| - 0.18 11.5 24.1 0.13 12.0 4.4 3.3 1 1 2 3 3 2 0 Coiled-coil domain-containing protein 106 Occludin_ELL PF07303.13 gi|55378020|ref|YP_135870.1| - 0.19 12.5 15.5 1.2 10.0 0.7 3.6 1 1 1 2 2 1 0 Occludin homology domain Snapin_Pallidin PF14712.6 gi|55378020|ref|YP_135870.1| - 0.19 12.1 32.3 2.9 8.4 5.0 4.2 1 1 3 4 4 4 0 Snapin/Pallidin Rootletin PF15035.6 gi|55378020|ref|YP_135870.1| - 0.19 11.7 41.6 0.1 12.6 10.4 3.1 1 1 1 2 2 1 0 Ciliary rootlet component, centrosome cohesion DUF4446 PF14584.6 gi|55378020|ref|YP_135870.1| - 0.22 11.5 21.5 3.3 7.7 1.2 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) Tho2 PF11262.8 gi|55378020|ref|YP_135870.1| - 0.24 10.6 23.0 1.2 8.3 5.3 2.5 1 1 2 3 3 3 0 Transcription factor/nuclear export subunit protein 2 FmiP_Thoc5 PF09766.9 gi|55378020|ref|YP_135870.1| - 0.25 10.6 23.4 0.26 10.5 4.6 2.6 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 FlxA PF14282.6 gi|55378020|ref|YP_135870.1| - 0.28 11.2 37.1 0.1 12.6 3.9 3.4 1 1 3 4 4 4 0 FlxA-like protein P4Ha_N PF08336.11 gi|55378020|ref|YP_135870.1| - 0.29 11.2 19.7 0.33 11.0 0.4 3.8 1 1 2 3 3 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region SOGA PF11365.8 gi|55378020|ref|YP_135870.1| - 0.3 12.3 23.0 0.25 12.5 8.3 3.0 1 1 1 2 2 2 0 Protein SOGA UPF0449 PF15136.6 gi|55378020|ref|YP_135870.1| - 0.32 11.5 31.8 10 6.7 9.0 4.5 1 1 1 3 3 3 0 Uncharacterised protein family UPF0449 DUF2959 PF11172.8 gi|55378020|ref|YP_135870.1| - 0.38 10.9 21.5 1.2 9.2 6.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) Fzo_mitofusin PF04799.13 gi|55378020|ref|YP_135870.1| - 0.38 10.3 23.5 18 4.8 7.7 3.7 1 1 2 3 3 3 0 fzo-like conserved region PEARLI-4 PF05278.12 gi|55378020|ref|YP_135870.1| - 0.39 10.3 14.2 0.29 10.7 2.1 3.0 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) End3 PF12761.7 gi|55378020|ref|YP_135870.1| - 0.46 10.6 32.2 0.27 11.4 5.6 3.7 1 1 2 3 3 3 0 Actin cytoskeleton-regulatory complex protein END3 MbeD_MobD PF04899.12 gi|55378020|ref|YP_135870.1| - 0.47 10.6 18.6 3.5 7.8 2.0 4.0 1 1 3 4 4 4 0 MbeD/MobD like FemAB PF02388.16 gi|55378020|ref|YP_135870.1| - 0.48 9.2 21.7 0.17 10.7 3.6 2.5 1 1 0 2 2 2 0 FemAB family HAP1_N PF04849.13 gi|55378020|ref|YP_135870.1| - 0.53 9.4 40.5 5.2 6.2 40.5 2.2 1 1 0 1 1 1 0 HAP1 N-terminal conserved region DLP_helical PF18709.1 gi|55378020|ref|YP_135870.1| - 0.54 9.4 24.1 1.1 8.4 4.6 3.4 1 1 2 3 3 3 0 Dynamin-like helical domain V_ATPase_I PF01496.19 gi|55378020|ref|YP_135870.1| - 0.54 8.1 23.5 0.39 8.6 6.6 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CorA PF01544.18 gi|55378020|ref|YP_135870.1| - 0.56 9.5 28.6 0.63 9.3 17.9 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein V-SNARE_C PF12352.8 gi|55378020|ref|YP_135870.1| - 0.57 10.5 19.0 0.85 10.0 3.2 4.2 1 1 3 4 4 3 0 Snare region anchored in the vesicle membrane C-terminus GIT_CC PF16559.5 gi|55378020|ref|YP_135870.1| - 0.57 10.1 24.8 0.058 13.3 1.3 5.0 1 1 4 5 5 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF2203 PF09969.9 gi|55378020|ref|YP_135870.1| - 0.7 10.6 18.8 1.4e+04 -3.2 18.8 3.0 1 1 0 1 1 0 0 Uncharacterized conserved protein (DUF2203) KfrA_N PF11740.8 gi|55378020|ref|YP_135870.1| - 0.76 10.5 34.9 2 9.1 3.8 4.7 1 1 3 4 4 3 0 Plasmid replication region DNA-binding N-term FUSC PF04632.12 gi|55378020|ref|YP_135870.1| - 0.88 8.0 17.1 1.3 7.5 7.1 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family YscO PF07321.12 gi|55378020|ref|YP_135870.1| - 0.89 9.5 33.7 0.62 10.0 11.7 3.9 1 1 1 3 3 3 0 Type III secretion protein YscO CEP63 PF17045.5 gi|55378020|ref|YP_135870.1| - 1 9.2 31.1 1.6 8.6 24.2 2.4 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa Sulfatase_C PF14707.6 gi|55378020|ref|YP_135870.1| - 1.1 10.0 10.2 6.6 7.5 0.4 3.1 1 1 2 3 3 3 0 C-terminal region of aryl-sulfatase DASH_Spc19 PF08287.11 gi|55378020|ref|YP_135870.1| - 1.1 9.1 33.2 5.5 6.9 5.9 2.9 1 1 0 2 2 2 0 Spc19 HalX PF08663.10 gi|55378020|ref|YP_135870.1| - 1.1 9.6 54.8 1.8 8.9 4.1 5.9 1 1 2 3 3 2 0 HalX domain bZIP_Maf PF03131.17 gi|55378020|ref|YP_135870.1| - 1.2 9.7 29.9 7.4 7.2 3.8 4.5 1 1 4 5 5 5 0 bZIP Maf transcription factor BORCS7 PF16088.5 gi|55378020|ref|YP_135870.1| - 1.2 9.4 14.1 0.42 10.9 2.8 3.6 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 7 DUF4763 PF15960.5 gi|55378020|ref|YP_135870.1| - 1.2 8.3 30.9 0.43 9.8 7.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) Phage_GPO PF05929.11 gi|55378020|ref|YP_135870.1| - 1.3 8.6 25.2 7 6.2 2.5 2.9 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase YlqD PF11068.8 gi|55378020|ref|YP_135870.1| - 1.4 9.3 28.3 3.6 8.0 4.6 3.4 1 1 1 2 2 1 0 YlqD protein T3SSipB PF16535.5 gi|55378020|ref|YP_135870.1| - 1.5 9.3 19.7 3.6 8.0 11.1 2.7 1 1 1 2 2 2 0 Type III cell invasion protein SipB DUF3829 PF12889.7 gi|55378020|ref|YP_135870.1| - 1.5 8.2 15.6 6.8 6.1 2.6 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3829) DUF1465 PF07323.12 gi|55378020|ref|YP_135870.1| - 1.6 8.6 23.5 0.78 9.6 7.7 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1465) RPW8 PF05659.11 gi|55378020|ref|YP_135870.1| - 1.6 8.4 14.7 5.7 6.6 0.9 3.4 1 1 2 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Cluap1 PF10234.9 gi|55378020|ref|YP_135870.1| - 1.6 8.0 30.6 1.1e+04 -4.5 30.6 2.9 1 1 0 1 1 0 0 Clusterin-associated protein-1 Alanine_zipper PF11839.8 gi|55378020|ref|YP_135870.1| - 1.7 9.1 11.0 12 6.4 0.0 4.5 1 1 1 4 4 4 0 Alanine-zipper, major outer membrane lipoprotein DUF1515 PF07439.11 gi|55378020|ref|YP_135870.1| - 1.9 8.5 20.2 0.16 12.0 4.1 3.0 1 1 2 3 3 2 0 Protein of unknown function (DUF1515) kleA_kleC PF17383.2 gi|55378020|ref|YP_135870.1| - 2 8.8 20.9 11 6.4 0.3 4.5 1 1 5 6 6 6 0 Uncharacterized KorC regulated protein A DUF2935 PF11155.8 gi|55378020|ref|YP_135870.1| - 2 8.8 9.9 4.8 7.5 3.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) CREPT PF16566.5 gi|55378020|ref|YP_135870.1| - 2.1 8.5 19.9 3.4 7.8 3.3 2.8 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Sec8_exocyst PF04048.14 gi|55378020|ref|YP_135870.1| - 2.1 8.2 19.6 2.9 7.8 3.4 3.2 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain IFT20 PF14931.6 gi|55378020|ref|YP_135870.1| - 2.3 8.4 25.9 0.35 11.0 14.0 2.4 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 Striatin PF08232.12 gi|55378020|ref|YP_135870.1| - 2.3 8.8 19.2 1 9.9 1.9 2.5 1 1 2 3 3 3 0 Striatin family SCO1-SenC PF02630.14 gi|55378020|ref|YP_135870.1| - 2.6 7.9 6.2 1.8 8.4 1.3 2.6 1 1 2 3 3 2 0 SCO1/SenC DUF489 PF04356.12 gi|55378020|ref|YP_135870.1| - 2.7 8.0 9.8 8.6 6.3 3.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF489) Cortex-I_coil PF09304.10 gi|55378020|ref|YP_135870.1| - 2.7 8.3 33.1 1.5 9.1 10.3 3.7 1 1 3 4 4 4 0 Cortexillin I, coiled coil Kre28 PF17097.5 gi|55378020|ref|YP_135870.1| - 2.7 6.9 34.3 1.9 7.4 8.5 2.1 1 1 1 2 2 2 0 Spindle pole body component DASH_Dam1 PF08653.10 gi|55378020|ref|YP_135870.1| - 2.8 7.8 27.0 1.5 8.7 1.8 5.7 1 1 7 8 8 8 0 DASH complex subunit Dam1 DUF4337 PF14235.6 gi|55378020|ref|YP_135870.1| - 3.1 7.9 20.0 30 4.7 9.4 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) AATF-Che1 PF13339.6 gi|55378020|ref|YP_135870.1| - 3.4 8.3 23.0 2.4e+03 -0.9 21.4 2.5 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor DUF3053 PF11254.8 gi|55378020|ref|YP_135870.1| - 3.8 7.0 20.0 1.3 8.6 5.7 2.9 1 1 3 4 4 4 0 Protein of unknown function (DUF3053) WEMBL PF05701.11 gi|55378020|ref|YP_135870.1| - 3.9 6.0 29.2 6.5 5.3 29.2 1.3 1 1 0 1 1 1 0 Weak chloroplast movement under blue light Mt_ATP-synt_D PF05873.12 gi|55378020|ref|YP_135870.1| - 3.9 7.3 9.2 6 6.7 1.2 2.6 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) Cep57_CLD_2 PF14197.6 gi|55378020|ref|YP_135870.1| - 4 7.6 43.9 0.16 12.1 3.3 4.7 1 1 2 3 3 2 0 Centrosome localisation domain of PPC89 Nnf1 PF03980.14 gi|55378020|ref|YP_135870.1| - 4.2 7.8 33.8 3 8.2 0.7 4.8 1 1 3 4 4 3 0 Nnf1 KLRAQ PF10205.9 gi|55378020|ref|YP_135870.1| - 4.4 7.6 28.9 0.26 11.5 2.8 3.5 1 1 3 4 4 4 0 Predicted coiled-coil domain-containing protein Rho_Binding PF08912.11 gi|55378020|ref|YP_135870.1| - 4.6 8.1 36.6 5 8.0 2.2 4.7 1 1 3 4 4 4 0 Rho Binding DUF3958 PF13125.6 gi|55378020|ref|YP_135870.1| - 4.8 7.4 41.6 5.6 7.2 2.1 4.6 1 1 2 3 3 1 0 Protein of unknown function (DUF3958) Csm1_N PF18504.1 gi|55378020|ref|YP_135870.1| - 5.1 7.5 35.7 15 6.0 3.5 5.0 1 1 4 5 5 5 0 Csm1 N-terminal domain CENP-Q PF13094.6 gi|55378020|ref|YP_135870.1| - 5.1 7.3 36.1 0.18 12.0 6.8 3.0 1 1 1 2 2 1 0 CENP-Q, a CENPA-CAD centromere complex subunit OEP PF02321.18 gi|55378020|ref|YP_135870.1| - 5.4 6.8 25.7 13 5.5 17.4 2.7 1 1 1 2 2 2 0 Outer membrane efflux protein Phasin PF05597.11 gi|55378020|ref|YP_135870.1| - 5.5 7.0 18.4 1.8e+04 -5.9 18.3 3.8 1 1 0 1 1 0 0 Poly(hydroxyalcanoate) granule associated protein (phasin) GP41 PF00517.17 gi|55378020|ref|YP_135870.1| - 5.9 6.7 11.9 2 8.3 0.2 3.0 1 1 2 3 3 3 0 Retroviral envelope protein YtxH PF12732.7 gi|55378020|ref|YP_135870.1| - 6.2 7.4 17.3 1.8e+04 -6.6 17.3 3.6 1 1 0 1 1 0 0 YtxH-like protein Tmemb_cc2 PF10267.9 gi|55378020|ref|YP_135870.1| - 6.4 5.8 31.1 11 5.0 30.7 1.6 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein T2SSF PF00482.23 gi|55378020|ref|YP_135870.1| - 6.4 6.8 6.8 2.5 8.1 2.5 2.2 1 1 1 2 2 1 0 Type II secretion system (T2SS), protein F HR1 PF02185.16 gi|55378020|ref|YP_135870.1| - 6.5 7.0 31.4 7.8 6.7 3.1 4.2 1 1 3 4 4 4 0 Hr1 repeat FAM76 PF16046.5 gi|55378020|ref|YP_135870.1| - 6.5 6.0 21.3 74 2.5 21.3 2.2 1 1 0 1 1 1 0 FAM76 protein TSNAXIP1_N PF15739.5 gi|55378020|ref|YP_135870.1| - 6.7 7.1 25.6 2 8.8 3.9 3.2 1 1 2 3 3 3 0 Translin-associated factor X-interacting N-terminus DUF773 PF05600.12 gi|55378020|ref|YP_135870.1| - 7.3 5.2 22.3 2.2 6.9 4.9 2.9 1 1 2 3 3 3 0 CDK5 regulatory subunit-associated protein 3 Phlebovirus_NSM PF07246.11 gi|55378020|ref|YP_135870.1| - 7.9 5.8 22.3 3.1 7.1 2.0 3.3 1 1 3 4 4 4 0 Phlebovirus nonstructural protein NS-M DUF3782 PF12644.7 gi|55378020|ref|YP_135870.1| - 8.4 6.6 14.5 8.4 6.6 0.1 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF3782) Peptidase_C65 PF10275.9 gi|55378020|ref|YP_135870.1| - 8.9 5.7 12.2 5.6 6.3 0.7 2.5 1 1 2 3 3 3 0 Peptidase C65 Otubain Sec20 PF03908.13 gi|55378020|ref|YP_135870.1| - 9.8 6.2 16.9 7.1 6.6 0.5 3.3 1 1 2 3 3 3 0 Sec20 MIP-T3_C PF17749.1 gi|55378020|ref|YP_135870.1| - 9.9 6.1 31.6 23 5.0 14.5 2.6 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region PEP-utilisers_N PF05524.13 gi|55378021|ref|YP_135871.1| - 0.0014 18.8 3.8 0.068 13.3 0.0 2.7 3 0 0 3 3 3 2 PEP-utilising enzyme, N-terminal Phage_holin_3_6 PF07332.11 gi|55378021|ref|YP_135871.1| - 0.38 10.8 6.5 0.2 11.7 2.1 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III T2SSF PF00482.23 gi|55378021|ref|YP_135871.1| - 9 6.3 7.5 1.3 9.0 0.2 2.6 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein F AAA_3 PF07726.11 gi|55378022|ref|YP_135872.1| - 1.6e-61 205.9 0.3 2.9e-61 205.1 0.3 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|55378022|ref|YP_135872.1| - 2.6e-20 72.0 4.2 5.2e-20 71.1 4.2 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|55378022|ref|YP_135872.1| - 1.1e-11 44.9 0.0 2e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|55378022|ref|YP_135872.1| - 2e-07 30.4 0.0 3e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|55378022|ref|YP_135872.1| - 7.9e-07 29.6 0.0 2e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|55378022|ref|YP_135872.1| - 0.00037 20.2 0.0 0.0021 17.8 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55378022|ref|YP_135872.1| - 0.00057 19.7 0.1 0.009 15.8 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|55378022|ref|YP_135872.1| - 0.013 14.9 0.0 0.31 10.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|55378022|ref|YP_135872.1| - 0.024 15.0 0.0 3.8 7.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|55378022|ref|YP_135872.1| - 0.032 14.3 0.1 0.096 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_lid_8 PF17868.1 gi|55378022|ref|YP_135872.1| - 0.092 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA lid domain Transposase_20 PF02371.16 gi|55378022|ref|YP_135872.1| - 0.14 12.5 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family DUF58 PF01882.18 gi|55378023|ref|YP_135873.1| - 1.2e-21 76.7 0.3 4.6e-20 71.7 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|55378023|ref|YP_135873.1| - 1.7e-08 35.1 0.0 4.6e-08 33.7 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|55378023|ref|YP_135873.1| - 7e-06 25.6 0.1 1.4e-05 24.6 0.1 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|55378023|ref|YP_135873.1| - 0.039 14.2 0.0 0.067 13.4 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain Usp PF00582.26 gi|55378023|ref|YP_135873.1| - 0.12 12.9 0.1 0.2 12.2 0.1 1.4 1 0 0 1 1 1 0 Universal stress protein family PyrI PF01948.18 gi|55378024|ref|YP_135874.1| - 2.5e-34 117.4 0.3 3.2e-34 117.1 0.3 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|55378024|ref|YP_135874.1| - 2.6e-13 49.7 0.3 4.1e-13 49.0 0.3 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|55378025|ref|YP_135875.1| - 5.3e-42 143.3 0.0 1.3e-41 142.0 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|55378025|ref|YP_135875.1| - 1.6e-28 99.7 0.0 2.4e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FTP PF07504.13 gi|55378025|ref|YP_135875.1| - 0.11 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif VCBS PF13517.6 gi|55378026|ref|YP_135876.1| - 9.1e-24 83.8 24.5 2.4e-09 37.6 2.4 6.1 3 2 3 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|55378026|ref|YP_135876.1| - 1.8e-18 66.4 27.5 0.011 15.8 0.2 7.3 7 0 0 7 7 7 7 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|55378026|ref|YP_135876.1| - 0.0015 18.0 9.5 2.7 7.3 0.0 6.0 6 1 1 7 7 7 2 Insecticide toxin TcdB middle/N-terminal region Itfg2 PF15907.5 gi|55378026|ref|YP_135876.1| - 0.097 11.7 8.5 0.81 8.7 1.0 3.7 2 1 1 3 3 3 0 Integrin-alpha FG-GAP repeat-containing protein 2 BBS2_Mid PF14783.6 gi|55378026|ref|YP_135876.1| - 0.96 9.5 2.4 88 3.2 0.0 4.1 4 1 1 5 5 5 0 Ciliary BBSome complex subunit 2, middle region CbiA PF01656.23 gi|55378027|ref|YP_135877.1| - 6e-12 45.7 0.1 6e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|55378027|ref|YP_135877.1| - 3.4e-07 30.0 0.1 2.9e-05 23.7 0.1 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|55378027|ref|YP_135877.1| - 1.5e-06 28.3 0.1 1.2e-05 25.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|55378027|ref|YP_135877.1| - 3.9e-06 26.5 0.9 0.00095 18.7 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|55378027|ref|YP_135877.1| - 0.00026 20.3 0.2 0.0005 19.4 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|55378027|ref|YP_135877.1| - 0.0028 17.0 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ VirC1 PF07015.11 gi|55378027|ref|YP_135877.1| - 0.0093 15.3 0.2 0.24 10.6 0.1 2.1 2 0 0 2 2 2 1 VirC1 protein Zeta_toxin PF06414.12 gi|55378027|ref|YP_135877.1| - 0.026 13.8 0.1 0.043 13.1 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.6 gi|55378027|ref|YP_135877.1| - 0.03 13.9 0.9 0.077 12.6 0.9 2.0 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|55378028|ref|YP_135878.1| - 9.2e-08 31.7 0.0 0.0033 16.8 0.0 2.1 1 1 1 2 2 2 2 KaiC Importin_rep_3 PF18806.1 gi|55378028|ref|YP_135878.1| - 0.068 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Importin 13 repeat Trigger_N PF05697.13 gi|55378028|ref|YP_135878.1| - 0.17 12.2 0.0 0.28 11.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) SKG6 PF08693.10 gi|55378029|ref|YP_135879.1| - 1.1 8.7 6.7 0.12 11.8 1.8 1.8 1 1 1 2 2 2 0 Transmembrane alpha-helix domain FKBP_C PF00254.28 gi|55378030|ref|YP_135880.1| - 5.5e-06 26.6 0.3 1.5e-05 25.2 0.2 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.14 gi|55378030|ref|YP_135880.1| - 0.12 12.0 0.6 0.34 10.6 0.6 1.8 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) PALP PF00291.25 gi|55378031|ref|YP_135881.1| - 1.1e-72 244.9 4.4 1.3e-72 244.7 4.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CYTH PF01928.21 gi|55378032|ref|YP_135882.1| - 2.9e-37 128.3 5.4 3.3e-37 128.2 5.4 1.0 1 0 0 1 1 1 1 CYTH domain Acyl-ACP_TE PF01643.17 gi|55378032|ref|YP_135882.1| - 0.11 11.7 0.0 2.8 7.2 0.0 2.2 2 0 0 2 2 2 0 Acyl-ACP thioesterase AdoMet_Synthase PF01941.19 gi|55378033|ref|YP_135883.1| - 2.1e-170 566.8 4.8 2.3e-170 566.6 4.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|55378033|ref|YP_135883.1| - 0.043 14.5 2.1 0.26 12.0 0.0 2.8 2 1 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Asp23 PF03780.13 gi|55378033|ref|YP_135883.1| - 0.92 9.9 8.4 2.6 8.5 1.5 3.5 2 1 0 2 2 2 0 Asp23 family, cell envelope-related function ThiI PF02568.14 gi|55378034|ref|YP_135884.1| - 5.2e-44 150.2 0.0 8e-44 149.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|55378034|ref|YP_135884.1| - 1.8e-11 44.4 0.0 2.9e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 THUMP domain tRNA_Me_trans PF03054.16 gi|55378034|ref|YP_135884.1| - 0.0033 16.3 0.0 0.0049 15.7 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|55378034|ref|YP_135884.1| - 0.0059 16.4 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|55378034|ref|YP_135884.1| - 0.046 13.2 0.1 0.24 10.9 0.0 2.1 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC PALP PF00291.25 gi|55378036|ref|YP_135886.1| - 3.1e-62 210.7 0.0 4e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|55378036|ref|YP_135886.1| - 0.0011 18.9 0.1 0.003 17.5 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NikR_C PF08753.11 gi|55378037|ref|YP_135887.1| - 3.1e-20 72.1 1.1 3.1e-20 72.1 1.1 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|55378037|ref|YP_135887.1| - 4.9e-07 29.4 0.0 9.3e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|55378037|ref|YP_135887.1| - 0.043 14.0 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|55378037|ref|YP_135887.1| - 0.053 13.5 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB TetR_C_27 PF17935.1 gi|55378037|ref|YP_135887.1| - 0.069 13.2 0.5 0.1 12.7 0.5 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HicB_lk_antitox PF15919.5 gi|55378037|ref|YP_135887.1| - 0.079 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system eIF-1a PF01176.19 gi|55378039|ref|YP_135889.1| - 6.9e-21 73.8 0.1 8.1e-21 73.6 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 UPF0058 PF01893.16 gi|55378040|ref|YP_135890.1| - 1.6e-19 69.9 1.2 1.7e-19 69.9 1.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 TIG PF01833.24 gi|55378042|ref|YP_135892.1| - 0.026 14.6 1.1 0.15 12.2 1.1 2.1 1 1 0 1 1 1 0 IPT/TIG domain T2SSF PF00482.23 gi|55378047|ref|YP_135897.1| - 6.2e-28 97.3 6.3 2.6e-16 59.7 0.6 3.2 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Snf7 PF03357.21 gi|55378047|ref|YP_135897.1| - 0.014 15.0 0.1 0.039 13.5 0.1 1.7 1 0 0 1 1 1 0 Snf7 DUF1461 PF07314.11 gi|55378047|ref|YP_135897.1| - 0.022 14.7 1.0 0.085 12.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1461) T2SSE PF00437.20 gi|55378048|ref|YP_135898.1| - 3.5e-43 147.6 0.0 7.3e-43 146.6 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|55378048|ref|YP_135898.1| - 0.0032 17.2 0.1 0.0077 15.9 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Aminotran_1_2 PF00155.21 gi|55378049|ref|YP_135899.1| - 4.1e-67 226.9 0.0 4.6e-67 226.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|55378049|ref|YP_135899.1| - 2.7e-05 23.3 0.0 0.00013 21.0 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|55378049|ref|YP_135899.1| - 0.00011 21.6 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase LCIB_C_CA PF18599.1 gi|55378049|ref|YP_135899.1| - 0.043 13.1 0.0 0.07 12.4 0.0 1.3 1 0 0 1 1 1 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases AsnC_trans_reg PF01037.21 gi|55378050|ref|YP_135900.1| - 8.1e-16 57.8 0.1 1.5e-15 56.9 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|55378050|ref|YP_135900.1| - 2.8e-09 36.4 0.4 9.6e-09 34.7 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55378050|ref|YP_135900.1| - 1.1e-05 25.2 0.3 2.9e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|55378050|ref|YP_135900.1| - 0.00011 22.2 0.0 0.00025 21.0 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55378050|ref|YP_135900.1| - 0.00076 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55378050|ref|YP_135900.1| - 0.001 18.9 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|55378050|ref|YP_135900.1| - 0.002 17.8 0.0 0.0066 16.2 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|55378050|ref|YP_135900.1| - 0.0049 16.8 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|55378050|ref|YP_135900.1| - 0.0071 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|55378050|ref|YP_135900.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|55378050|ref|YP_135900.1| - 0.019 14.9 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|55378050|ref|YP_135900.1| - 0.029 14.9 0.1 0.089 13.3 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|55378050|ref|YP_135900.1| - 0.046 13.6 0.1 0.075 12.9 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Meth_synt_2 PF01717.18 gi|55378050|ref|YP_135900.1| - 0.056 12.7 0.0 0.079 12.2 0.0 1.2 1 0 0 1 1 1 0 Cobalamin-independent synthase, Catalytic domain HTH_31 PF13560.6 gi|55378050|ref|YP_135900.1| - 0.11 12.9 0.0 0.23 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AhpC-TSA PF00578.21 gi|55378052|ref|YP_135902.1| - 1e-17 64.2 0.0 1.4e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55378052|ref|YP_135902.1| - 2.6e-14 53.2 0.0 3.4e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|55378052|ref|YP_135902.1| - 0.012 16.0 0.1 0.023 15.2 0.1 1.4 1 1 0 1 1 1 0 Thioredoxin-like domain TraF PF13728.6 gi|55378052|ref|YP_135902.1| - 0.026 14.4 0.0 0.088 12.6 0.0 1.9 1 1 0 1 1 1 0 F plasmid transfer operon protein T4_deiodinase PF00837.17 gi|55378052|ref|YP_135902.1| - 0.032 13.5 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 Iodothyronine deiodinase Thioredoxin PF00085.20 gi|55378052|ref|YP_135902.1| - 0.038 14.0 0.0 0.85 9.6 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin PBP-Tp47_a PF14889.6 gi|55378052|ref|YP_135902.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain a Methyltransf_3 PF01596.17 gi|55378055|ref|YP_135905.1| - 1e-20 73.8 0.0 1.3e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|55378055|ref|YP_135905.1| - 9.5e-12 45.9 0.1 1.6e-11 45.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378055|ref|YP_135905.1| - 1.2e-07 31.7 0.1 1.6e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|55378055|ref|YP_135905.1| - 0.00016 21.5 0.0 0.00022 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|55378055|ref|YP_135905.1| - 0.0094 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|55378055|ref|YP_135905.1| - 0.02 15.6 0.0 0.034 14.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55378055|ref|YP_135905.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|55378055|ref|YP_135905.1| - 0.16 11.2 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CheC PF04509.12 gi|55378056|ref|YP_135906.1| - 1.1e-14 54.0 1.7 1.3e-14 53.8 0.4 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|55378056|ref|YP_135906.1| - 7.5e-05 22.8 1.4 0.00017 21.7 0.1 2.1 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX AMP-binding PF00501.28 gi|55378057|ref|YP_135907.1| - 4.8e-89 298.9 0.0 5.5e-89 298.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55378057|ref|YP_135907.1| - 5.2e-19 69.0 0.0 1.3e-18 67.8 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3281 PF11685.8 gi|55378058|ref|YP_135908.1| - 0.046 13.1 0.1 0.069 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3281) TAT_signal PF10518.9 gi|55378058|ref|YP_135908.1| - 0.19 11.7 2.7 0.33 10.9 2.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acyl-CoA_dh_1 PF00441.24 gi|55378059|ref|YP_135909.1| - 2e-41 141.7 3.1 2e-41 141.7 3.1 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55378059|ref|YP_135909.1| - 1.1e-26 92.8 0.0 3.1e-26 91.4 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|55378059|ref|YP_135909.1| - 4.5e-22 78.8 2.3 1.4e-21 77.3 2.3 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|55378059|ref|YP_135909.1| - 3.1e-19 69.6 4.4 5.7e-19 68.7 3.3 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Cdc6_C PF09079.11 gi|55378060|ref|YP_135910.1| - 6.6e-16 58.1 0.1 1.3e-15 57.1 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|55378060|ref|YP_135910.1| - 1.5e-12 47.9 0.0 7.3e-12 45.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|55378060|ref|YP_135910.1| - 7.1e-08 33.0 0.0 6.2e-07 30.0 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|55378060|ref|YP_135910.1| - 8.6e-07 29.0 0.0 1.5e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 NACHT domain ATPase_2 PF01637.18 gi|55378060|ref|YP_135910.1| - 1.5e-05 25.0 0.0 4.2e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|55378060|ref|YP_135910.1| - 3.1e-05 24.4 0.0 7.7e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|55378060|ref|YP_135910.1| - 4.7e-05 22.9 0.0 0.00011 21.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein PadR PF03551.14 gi|55378060|ref|YP_135910.1| - 0.00019 21.3 0.1 0.00045 20.1 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family KAP_NTPase PF07693.14 gi|55378060|ref|YP_135910.1| - 0.012 14.9 0.0 0.074 12.3 0.0 1.8 1 1 1 2 2 2 0 KAP family P-loop domain Sigma54_activat PF00158.26 gi|55378060|ref|YP_135910.1| - 0.016 14.9 0.0 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|55378060|ref|YP_135910.1| - 0.044 14.3 0.0 0.097 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain PSD5 PF07637.11 gi|55378060|ref|YP_135910.1| - 0.047 14.0 0.7 1.2 9.6 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) AAA_7 PF12775.7 gi|55378060|ref|YP_135910.1| - 0.049 13.1 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|55378060|ref|YP_135910.1| - 0.06 13.3 0.0 0.71 9.9 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TrmB PF01978.19 gi|55378060|ref|YP_135910.1| - 0.088 12.7 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEAD PF00270.29 gi|55378060|ref|YP_135910.1| - 0.1 12.4 0.0 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|55378060|ref|YP_135910.1| - 0.11 12.9 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.13 gi|55378060|ref|YP_135910.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_23 PF13476.6 gi|55378060|ref|YP_135910.1| - 0.12 12.8 0.2 0.52 10.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|55378060|ref|YP_135910.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Lactamase_B PF00753.27 gi|55378061|ref|YP_135911.1| - 2e-19 70.4 5.4 2.9e-19 69.9 5.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55378061|ref|YP_135911.1| - 8.3e-09 35.2 0.9 2.3e-08 33.8 0.2 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|55378061|ref|YP_135911.1| - 0.024 14.5 0.2 0.035 14.0 0.2 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PSI PF01437.25 gi|55378061|ref|YP_135911.1| - 0.27 11.8 3.0 0.23 12.1 0.8 1.9 2 0 0 2 2 2 0 Plexin repeat DICT PF10069.9 gi|55378063|ref|YP_135913.1| - 1.4e-17 63.7 0.0 2.6e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system CHASE6_C PF17150.4 gi|55378063|ref|YP_135913.1| - 0.12 13.1 0.2 0.32 11.7 0.2 1.7 1 0 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain POR_N PF01855.19 gi|55378064|ref|YP_135914.1| - 2.2e-49 168.3 0.2 4.5e-49 167.3 0.2 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|55378064|ref|YP_135914.1| - 1.1e-44 152.6 0.0 5.6e-44 150.3 0.0 2.1 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|55378064|ref|YP_135914.1| - 1.9e-09 37.7 0.0 3.4e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|55378064|ref|YP_135914.1| - 0.0004 20.1 0.1 0.00081 19.0 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|55378065|ref|YP_135915.1| - 1.1e-30 106.5 0.1 1.6e-30 105.9 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|55378065|ref|YP_135915.1| - 0.0032 17.6 0.1 0.0083 16.2 0.1 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_24 PF13412.6 gi|55378066|ref|YP_135916.1| - 1.8e-14 53.0 0.1 2.7e-14 52.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|55378066|ref|YP_135916.1| - 3.5e-12 46.1 0.0 6.5e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|55378066|ref|YP_135916.1| - 5.4e-10 38.9 0.2 9.8e-10 38.1 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|55378066|ref|YP_135916.1| - 2.3e-08 33.8 0.1 4.5e-08 32.9 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|55378066|ref|YP_135916.1| - 5.1e-07 29.6 0.0 8.9e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55378066|ref|YP_135916.1| - 1.1e-06 28.3 0.0 1.8e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|55378066|ref|YP_135916.1| - 2.3e-06 27.3 0.0 3.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|55378066|ref|YP_135916.1| - 4e-06 26.9 0.4 8e-06 26.0 0.4 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|55378066|ref|YP_135916.1| - 4.8e-06 26.3 0.0 7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|55378066|ref|YP_135916.1| - 6.4e-06 26.0 0.0 1.1e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55378066|ref|YP_135916.1| - 9.1e-06 25.5 0.0 2.8e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|55378066|ref|YP_135916.1| - 2.9e-05 23.7 0.1 5.1e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|55378066|ref|YP_135916.1| - 3.3e-05 23.7 0.0 5.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|55378066|ref|YP_135916.1| - 9.6e-05 22.7 0.1 0.00017 21.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|55378066|ref|YP_135916.1| - 0.00015 21.6 0.2 0.00023 21.0 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|55378066|ref|YP_135916.1| - 0.00019 21.5 0.1 0.00034 20.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|55378066|ref|YP_135916.1| - 0.00096 18.8 0.1 0.002 17.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|55378066|ref|YP_135916.1| - 0.0011 18.9 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|55378066|ref|YP_135916.1| - 0.0013 18.8 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix FaeA PF04703.12 gi|55378066|ref|YP_135916.1| - 0.0013 19.0 0.1 0.002 18.5 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein Sigma70_r4_2 PF08281.12 gi|55378066|ref|YP_135916.1| - 0.0016 18.1 0.1 0.003 17.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_6 PF01418.17 gi|55378066|ref|YP_135916.1| - 0.0026 17.7 0.0 0.0049 16.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_10 PF04967.12 gi|55378066|ref|YP_135916.1| - 0.014 15.2 0.1 0.029 14.2 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_47 PF16221.5 gi|55378066|ref|YP_135916.1| - 0.015 14.9 0.0 0.036 13.6 0.0 1.7 2 0 0 2 2 2 0 winged helix-turn-helix TFIIE_alpha PF02002.17 gi|55378066|ref|YP_135916.1| - 0.039 13.8 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Sigma70_r4 PF04545.16 gi|55378066|ref|YP_135916.1| - 0.049 13.2 0.4 0.11 12.1 0.3 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 LacI PF00356.21 gi|55378066|ref|YP_135916.1| - 0.053 13.3 0.0 0.21 11.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_45 PF14947.6 gi|55378066|ref|YP_135916.1| - 0.057 13.4 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix RPA_C PF08784.11 gi|55378066|ref|YP_135916.1| - 0.061 14.0 0.0 0.1 13.3 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_30 PF13556.6 gi|55378066|ref|YP_135916.1| - 0.064 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_27 PF13463.6 gi|55378066|ref|YP_135916.1| - 0.066 13.7 0.1 0.2 12.2 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain DUF4978 PF16349.5 gi|55378066|ref|YP_135916.1| - 0.074 12.7 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4978) TetR_N PF00440.23 gi|55378066|ref|YP_135916.1| - 0.08 12.8 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_1 PF00126.27 gi|55378066|ref|YP_135916.1| - 0.084 12.8 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Phage_NinH PF06322.11 gi|55378066|ref|YP_135916.1| - 0.1 12.5 0.0 0.51 10.3 0.0 1.9 2 0 0 2 2 2 0 Phage NinH protein HTH_34 PF13601.6 gi|55378066|ref|YP_135916.1| - 0.11 12.6 0.0 0.2 11.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Methyltransf_14 PF08484.11 gi|55378066|ref|YP_135916.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain SLH PF00395.20 gi|55378066|ref|YP_135916.1| - 0.14 12.1 0.1 0.3 11.1 0.0 1.6 1 1 0 1 1 1 0 S-layer homology domain TnsD PF15978.5 gi|55378066|ref|YP_135916.1| - 0.2 10.6 0.1 0.26 10.2 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D DHHA1 PF02272.19 gi|55378067|ref|YP_135917.1| - 9.9e-15 55.2 0.4 3.8e-14 53.3 0.3 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|55378067|ref|YP_135917.1| - 6.6e-12 45.5 0.1 1.9e-11 44.1 0.0 1.8 2 0 0 2 2 2 1 DHH family TrkA_N PF02254.18 gi|55378067|ref|YP_135917.1| - 1.6e-09 38.0 0.0 5.2e-09 36.4 0.0 2.0 1 0 0 1 1 1 1 TrkA-N domain CBS PF00571.28 gi|55378068|ref|YP_135918.1| - 5.4e-25 87.6 2.9 1e-11 45.1 0.1 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|55378068|ref|YP_135918.1| - 2.9e-10 40.3 0.0 1.2e-09 38.3 0.0 2.0 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|55378068|ref|YP_135918.1| - 0.00025 21.2 0.1 0.0019 18.3 0.1 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.11 gi|55378068|ref|YP_135918.1| - 0.034 13.0 0.0 0.045 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) MM_CoA_mutase PF01642.22 gi|55378069|ref|YP_135919.1| - 3.3e-215 715.5 1.0 3.8e-215 715.3 1.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Yip1 PF04893.17 gi|55378070|ref|YP_135920.1| - 0.011 15.5 1.8 0.013 15.3 1.8 1.1 1 0 0 1 1 1 0 Yip1 domain LapA_dom PF06305.11 gi|55378070|ref|YP_135920.1| - 0.038 13.8 0.7 0.038 13.8 0.7 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain SPC12 PF06645.13 gi|55378070|ref|YP_135920.1| - 0.22 11.6 0.1 0.22 11.6 0.1 2.2 2 1 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) FeoB_C PF07664.12 gi|55378070|ref|YP_135920.1| - 1.5 8.6 7.1 1.6 8.5 0.3 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus COX1 PF00115.20 gi|55378072|ref|YP_135922.1| - 1.6e-149 498.4 59.6 1.6e-149 498.4 59.6 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF485 PF04341.12 gi|55378073|ref|YP_135923.1| - 0.003 17.5 0.5 0.0036 17.2 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF485 DUF3007 PF11460.8 gi|55378073|ref|YP_135923.1| - 0.042 14.1 0.3 0.052 13.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) ABC2_membrane_3 PF12698.7 gi|55378073|ref|YP_135923.1| - 0.15 11.1 4.7 0.18 10.9 4.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein TadE PF07811.12 gi|55378073|ref|YP_135923.1| - 0.22 11.8 0.2 0.22 11.8 0.2 2.2 2 0 0 2 2 2 0 TadE-like protein DUF2070 PF09843.9 gi|55378073|ref|YP_135923.1| - 0.26 9.5 4.1 0.29 9.4 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Cyt_c_ox_IV PF12270.8 gi|55378074|ref|YP_135924.1| - 0.01 16.0 2.2 0.01 16.0 2.2 2.6 1 1 2 3 3 3 0 Cytochrome c oxidase subunit IV JAKMIP_CC3 PF16034.5 gi|55378075|ref|YP_135925.1| - 0.0003 20.8 1.7 0.0003 20.8 1.7 2.5 2 1 0 3 3 1 1 JAKMIP CC3 domain MscS_porin PF12795.7 gi|55378075|ref|YP_135925.1| - 0.00057 19.5 11.3 0.00057 19.5 11.3 2.3 3 0 0 3 3 2 1 Mechanosensitive ion channel porin domain YabA PF06156.13 gi|55378075|ref|YP_135925.1| - 0.0017 19.0 4.6 0.036 14.7 3.7 2.5 2 0 0 2 2 2 1 Initiation control protein YabA Atg14 PF10186.9 gi|55378075|ref|YP_135925.1| - 0.002 17.3 1.9 0.0031 16.7 1.9 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 ADIP PF11559.8 gi|55378075|ref|YP_135925.1| - 0.0056 16.8 4.6 0.013 15.6 4.6 1.6 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Wtap PF17098.5 gi|55378075|ref|YP_135925.1| - 0.0079 16.1 7.2 0.011 15.7 6.0 1.9 1 1 0 1 1 1 1 WTAP/Mum2p family CENP-F_leu_zip PF10473.9 gi|55378075|ref|YP_135925.1| - 0.0096 16.0 7.1 0.021 14.8 7.1 1.5 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rootletin PF15035.6 gi|55378075|ref|YP_135925.1| - 0.012 15.6 3.9 0.023 14.7 3.9 1.4 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion HBM PF16591.5 gi|55378075|ref|YP_135925.1| - 0.014 14.9 3.5 0.027 13.9 3.5 1.4 1 0 0 1 1 1 0 Helical bimodular sensor domain RasGAP_C PF03836.15 gi|55378075|ref|YP_135925.1| - 0.018 15.2 0.5 0.032 14.4 0.5 1.3 1 0 0 1 1 1 0 RasGAP C-terminus Filament PF00038.21 gi|55378075|ref|YP_135925.1| - 0.022 14.4 5.9 0.039 13.5 5.9 1.3 1 0 0 1 1 1 0 Intermediate filament protein HAUS-augmin3 PF14932.6 gi|55378075|ref|YP_135925.1| - 0.022 14.3 4.5 0.043 13.4 4.5 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 DivIC PF04977.15 gi|55378075|ref|YP_135925.1| - 0.027 14.3 6.7 0.067 13.0 6.7 1.7 1 0 0 1 1 1 0 Septum formation initiator MPS2 PF17060.5 gi|55378075|ref|YP_135925.1| - 0.028 13.7 0.5 0.045 13.0 0.5 1.2 1 0 0 1 1 1 0 Monopolar spindle protein 2 Cnn_1N PF07989.11 gi|55378075|ref|YP_135925.1| - 0.034 14.3 6.0 0.079 13.1 5.8 1.7 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 TMF_DNA_bd PF12329.8 gi|55378075|ref|YP_135925.1| - 0.036 14.1 12.8 0.065 13.2 12.8 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding TolA_bind_tri PF16331.5 gi|55378075|ref|YP_135925.1| - 0.039 14.0 8.9 0.09 12.9 8.9 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation Spc7 PF08317.11 gi|55378075|ref|YP_135925.1| - 0.04 12.8 5.3 0.063 12.2 5.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Fmp27_WPPW PF10359.9 gi|55378075|ref|YP_135925.1| - 0.058 12.2 4.3 0.082 11.8 3.4 1.6 2 0 0 2 2 1 0 RNA pol II promoter Fmp27 protein domain FPP PF05911.11 gi|55378075|ref|YP_135925.1| - 0.073 11.3 6.5 0.12 10.6 6.5 1.2 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Cep57_CLD_2 PF14197.6 gi|55378075|ref|YP_135925.1| - 0.074 13.1 9.5 0.18 11.9 9.5 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 APG6_N PF17675.1 gi|55378075|ref|YP_135925.1| - 0.078 13.5 16.3 0.03 14.9 11.9 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4164 PF13747.6 gi|55378075|ref|YP_135925.1| - 0.081 13.2 11.7 0.22 11.8 11.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) TarH PF02203.15 gi|55378075|ref|YP_135925.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.9 2 0 0 2 2 1 0 Tar ligand binding domain homologue TPR_MLP1_2 PF07926.12 gi|55378075|ref|YP_135925.1| - 0.18 11.9 10.3 0.56 10.3 10.3 1.8 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein FapA PF03961.13 gi|55378075|ref|YP_135925.1| - 0.19 10.3 1.0 0.28 9.7 1.0 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Trimer_CC PF08954.11 gi|55378075|ref|YP_135925.1| - 0.22 11.1 10.1 0.29 10.7 8.1 2.3 1 1 0 1 1 1 0 Trimerisation motif V-SNARE PF05008.15 gi|55378075|ref|YP_135925.1| - 0.23 11.8 5.6 0.64 10.4 5.6 1.8 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus DUF3450 PF11932.8 gi|55378075|ref|YP_135925.1| - 0.24 10.7 5.1 0.47 9.7 5.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DHR10 PF18595.1 gi|55378075|ref|YP_135925.1| - 0.29 11.2 12.5 0.77 9.8 12.5 1.6 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain Tropomyosin_1 PF12718.7 gi|55378075|ref|YP_135925.1| - 0.3 11.2 12.7 0.06 13.5 8.4 2.0 2 0 0 2 2 1 0 Tropomyosin like DUF724 PF05266.14 gi|55378075|ref|YP_135925.1| - 0.34 10.7 2.2 0.67 9.7 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Nsp1_C PF05064.13 gi|55378075|ref|YP_135925.1| - 0.46 10.3 4.7 0.97 9.3 4.7 1.5 1 0 0 1 1 1 0 Nsp1-like C-terminal region UPF0242 PF06785.11 gi|55378075|ref|YP_135925.1| - 0.47 10.5 7.7 0.86 9.7 7.7 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Ax_dynein_light PF10211.9 gi|55378075|ref|YP_135925.1| - 0.49 10.3 4.7 1 9.3 4.7 1.5 1 0 0 1 1 1 0 Axonemal dynein light chain DUF1664 PF07889.12 gi|55378075|ref|YP_135925.1| - 0.52 10.4 1.8 0.93 9.5 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) bZIP_1 PF00170.21 gi|55378075|ref|YP_135925.1| - 0.53 10.4 4.2 1.2 9.2 4.2 1.7 1 0 0 1 1 1 0 bZIP transcription factor HR1 PF02185.16 gi|55378075|ref|YP_135925.1| - 0.6 10.3 13.4 0.094 12.8 3.3 2.9 2 1 1 3 3 2 0 Hr1 repeat Golgin_A5 PF09787.9 gi|55378075|ref|YP_135925.1| - 0.74 9.2 6.2 1.5 8.2 6.2 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 5 AAA_13 PF13166.6 gi|55378075|ref|YP_135925.1| - 0.96 8.0 4.0 1.7 7.2 4.0 1.3 1 0 0 1 1 1 0 AAA domain CENP-H PF05837.12 gi|55378075|ref|YP_135925.1| - 1.3 9.5 6.0 3.1 8.2 6.0 1.6 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Macoilin PF09726.9 gi|55378075|ref|YP_135925.1| - 1.6 7.2 12.5 2.7 6.4 12.5 1.3 1 0 0 1 1 1 0 Macoilin family FlaC_arch PF05377.11 gi|55378075|ref|YP_135925.1| - 1.9 9.0 7.8 8.7 6.8 2.7 2.5 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Spc24 PF08286.11 gi|55378075|ref|YP_135925.1| - 2.4 8.4 8.9 8.9 6.6 8.9 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF883 PF05957.13 gi|55378075|ref|YP_135925.1| - 3.1 8.5 10.3 1.3 9.7 6.9 2.2 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) FlxA PF14282.6 gi|55378075|ref|YP_135925.1| - 3.2 7.8 8.6 0.087 12.8 1.0 2.2 2 0 0 2 2 1 0 FlxA-like protein SlyX PF04102.12 gi|55378075|ref|YP_135925.1| - 5.2 7.8 11.5 39 5.0 11.5 2.5 1 1 0 1 1 1 0 SlyX DUF641 PF04859.12 gi|55378075|ref|YP_135925.1| - 5.4 7.4 8.4 4.3 7.7 1.9 2.4 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) ZapB PF06005.12 gi|55378075|ref|YP_135925.1| - 5.4 7.5 15.9 1.7 9.1 12.3 2.0 2 0 0 2 2 1 0 Cell division protein ZapB FAM76 PF16046.5 gi|55378075|ref|YP_135925.1| - 6 6.1 13.2 0.071 12.4 2.6 2.4 2 0 0 2 2 2 0 FAM76 protein HTH_12 PF08461.10 gi|55378076|ref|YP_135926.1| - 0.0073 16.2 0.0 0.015 15.3 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|55378076|ref|YP_135926.1| - 0.0096 15.5 0.4 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55378076|ref|YP_135926.1| - 0.03 14.2 0.2 0.093 12.6 0.2 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|55378076|ref|YP_135926.1| - 0.063 13.2 0.1 0.11 12.4 0.1 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|55378076|ref|YP_135926.1| - 0.08 12.9 0.0 0.09 12.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_IclR PF09339.10 gi|55378076|ref|YP_135926.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain CLZ PF16526.5 gi|55378076|ref|YP_135926.1| - 0.34 11.3 4.0 4.8 7.6 0.4 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Adenylsucc_synt PF00709.21 gi|55378077|ref|YP_135927.1| - 1.5e-154 514.9 0.0 1.8e-154 514.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Trm112p PF03966.16 gi|55378078|ref|YP_135928.1| - 1.3e-10 41.7 0.6 2.3e-10 40.9 0.6 1.4 1 1 0 1 1 1 1 Trm112p-like protein zf-C2HE PF16278.5 gi|55378078|ref|YP_135928.1| - 0.059 13.8 0.2 0.073 13.5 0.2 1.2 1 0 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger DR2241 PF18069.1 gi|55378079|ref|YP_135929.1| - 4.2e-46 155.4 2.9 1.2e-45 153.9 0.9 2.5 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|55378079|ref|YP_135929.1| - 2.8e-28 98.2 0.3 5e-28 97.4 0.3 1.4 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Peptidase_M48 PF01435.18 gi|55378080|ref|YP_135930.1| - 5.5e-13 49.1 0.0 6.1e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 CbiX PF01903.17 gi|55378082|ref|YP_135932.1| - 2.5e-42 143.5 0.1 9e-20 71.0 0.0 2.3 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|55378082|ref|YP_135932.1| - 9.8e-07 28.4 0.0 0.0011 18.3 0.1 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) tRNA-synt_1e PF01406.19 gi|55378085|ref|YP_135935.1| - 4e-105 351.5 0.0 9.1e-104 347.0 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|55378085|ref|YP_135935.1| - 1.9e-12 47.5 1.0 7.8e-12 45.5 0.3 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|55378085|ref|YP_135935.1| - 1e-11 44.3 0.1 1.7e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|55378085|ref|YP_135935.1| - 1.3e-08 34.2 0.1 2.5e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|55378085|ref|YP_135935.1| - 0.0001 20.8 0.0 0.00031 19.1 0.0 1.8 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|55378085|ref|YP_135935.1| - 0.0042 16.0 0.0 0.008 15.1 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.19 gi|55378085|ref|YP_135935.1| - 0.0077 16.0 0.2 0.024 14.4 0.2 1.8 1 0 0 1 1 1 1 UvrB/uvrC motif DUF883 PF05957.13 gi|55378085|ref|YP_135935.1| - 8.4 7.1 7.1 7.8 7.2 0.0 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) PetM PF08041.11 gi|55378087|ref|YP_135937.1| - 2.7 7.6 5.7 2.4 7.8 0.7 2.2 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 DUF3040 PF11239.8 gi|55378087|ref|YP_135937.1| - 6.2 7.2 8.6 9.3 6.6 8.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) CorA PF01544.18 gi|55378088|ref|YP_135938.1| - 2.6e-55 187.8 0.1 3e-55 187.6 0.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF5446 PF17522.2 gi|55378088|ref|YP_135938.1| - 0.092 12.9 0.8 0.19 11.9 0.8 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5446) Prominin PF05478.11 gi|55378088|ref|YP_135938.1| - 0.19 9.6 0.0 0.23 9.4 0.0 1.1 1 0 0 1 1 1 0 Prominin TctA PF01970.16 gi|55378089|ref|YP_135939.1| - 1.4e-57 195.2 39.7 1.9e-57 194.9 39.7 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family MoeA_N PF03453.17 gi|55378090|ref|YP_135940.1| - 2.3e-41 141.1 5.1 6.4e-41 139.7 5.1 1.8 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|55378090|ref|YP_135940.1| - 1.9e-26 92.5 0.1 3.2e-26 91.7 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|55378090|ref|YP_135940.1| - 9.6e-20 70.5 2.5 2.4e-19 69.3 0.1 2.8 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) PASTA PF03793.19 gi|55378090|ref|YP_135940.1| - 0.049 13.5 1.5 0.2 11.5 1.5 2.0 1 0 0 1 1 1 0 PASTA domain MoeA_N PF03453.17 gi|55378091|ref|YP_135941.1| - 7.3e-28 97.3 3.5 1.4e-27 96.4 3.5 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|55378091|ref|YP_135941.1| - 1.6e-24 86.2 0.0 3.1e-24 85.3 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|55378091|ref|YP_135941.1| - 2.1e-22 79.2 0.0 2.4e-21 75.7 0.0 2.3 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|55378091|ref|YP_135941.1| - 8e-17 61.2 0.2 9.6e-16 57.7 0.0 2.5 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) LysR_substrate PF03466.20 gi|55378091|ref|YP_135941.1| - 0.0064 15.9 2.4 0.076 12.4 0.5 2.4 2 0 0 2 2 2 1 LysR substrate binding domain PBP_like_2 PF12849.7 gi|55378091|ref|YP_135941.1| - 0.039 13.6 0.0 0.52 9.9 0.0 2.4 2 1 1 3 3 3 0 PBP superfamily domain Fe-ADH PF00465.19 gi|55378092|ref|YP_135942.1| - 5.3e-61 206.4 2.0 5.9e-61 206.3 2.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|55378092|ref|YP_135942.1| - 7.6e-12 45.5 0.4 2.9e-10 40.3 0.0 2.1 1 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase Pyr_redox_2 PF07992.14 gi|55378093|ref|YP_135943.1| - 2.3e-39 135.4 0.3 2.7e-39 135.1 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55378093|ref|YP_135943.1| - 3.2e-07 30.8 0.5 1e-05 26.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThuA PF06283.11 gi|55378094|ref|YP_135944.1| - 1.6e-33 116.7 0.5 1.9e-33 116.5 0.5 1.1 1 0 0 1 1 1 1 Trehalose utilisation CstA PF02554.14 gi|55378094|ref|YP_135944.1| - 0.075 11.9 0.1 0.1 11.5 0.1 1.1 1 0 0 1 1 1 0 Carbon starvation protein CstA HxlR PF01638.17 gi|55378095|ref|YP_135945.1| - 1.1e-27 95.7 0.0 1.4e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|55378095|ref|YP_135945.1| - 0.0065 16.3 0.0 0.0093 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|55378095|ref|YP_135945.1| - 0.014 15.3 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|55378095|ref|YP_135945.1| - 0.087 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|55378095|ref|YP_135945.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix CoA_binding_2 PF13380.6 gi|55378096|ref|YP_135946.1| - 1e-36 126.0 0.1 1.2e-36 125.8 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|55378096|ref|YP_135946.1| - 7.9e-05 23.3 0.0 0.00012 22.7 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|55378096|ref|YP_135946.1| - 0.051 14.4 0.0 0.15 12.9 0.0 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF3665 PF12427.8 gi|55378096|ref|YP_135946.1| - 0.39 10.4 2.5 0.38 10.5 0.5 2.0 3 0 0 3 3 3 0 Branched-chain amino acid aminotransferase DUF393 PF04134.12 gi|55378097|ref|YP_135947.1| - 6.3e-14 53.3 0.0 7.3e-14 53.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 BolA PF01722.18 gi|55378098|ref|YP_135948.1| - 9.8e-17 61.0 0.0 1.1e-16 60.8 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Glutaredoxin PF00462.24 gi|55378099|ref|YP_135949.1| - 4.9e-16 58.7 0.0 8.5e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|55378099|ref|YP_135949.1| - 0.016 15.6 0.0 0.027 14.9 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain KH_7 PF17214.3 gi|55378101|ref|YP_135951.1| - 3.8e-27 94.0 0.6 8.3e-25 86.5 0.4 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|55378101|ref|YP_135951.1| - 5.2e-22 78.2 0.0 9.6e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|55378101|ref|YP_135951.1| - 2.3e-14 53.1 0.0 4.7e-14 52.1 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|55378101|ref|YP_135951.1| - 1.7e-12 47.8 1.0 6.9e-12 45.8 1.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|55378101|ref|YP_135951.1| - 1.1e-10 41.2 0.0 2.1e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|55378101|ref|YP_135951.1| - 1.9e-10 40.6 0.2 5.1e-10 39.2 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|55378101|ref|YP_135951.1| - 7.5e-06 25.7 0.1 6.9e-05 22.6 0.0 2.4 2 1 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|55378101|ref|YP_135951.1| - 0.00069 19.4 0.0 0.0019 18.0 0.0 1.7 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.6 gi|55378101|ref|YP_135951.1| - 0.0017 18.2 0.0 0.0055 16.6 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF3489 PF11994.8 gi|55378101|ref|YP_135951.1| - 0.13 12.4 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) DHHA1 PF02272.19 gi|55378102|ref|YP_135952.1| - 2.3e-13 50.7 0.1 1.3e-12 48.4 0.0 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|55378102|ref|YP_135952.1| - 2.2e-12 47.1 0.2 3.5e-12 46.4 0.2 1.3 1 0 0 1 1 1 1 DHH family MFS_MOT1 PF16983.5 gi|55378103|ref|YP_135953.1| - 2e-40 137.7 27.8 2.3e-21 76.3 10.4 3.5 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|55378103|ref|YP_135953.1| - 6.1e-06 25.2 8.3 6.1e-06 25.2 8.3 2.4 1 1 1 2 2 2 1 Sulfate permease family Radical_SAM PF04055.21 gi|55378104|ref|YP_135954.1| - 1.3e-22 81.0 0.0 2.5e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|55378104|ref|YP_135954.1| - 3.4e-14 52.9 0.2 1.3e-11 44.6 0.0 2.4 1 1 1 2 2 2 2 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|55378104|ref|YP_135954.1| - 1.2e-07 32.1 0.0 2.3e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|55378104|ref|YP_135954.1| - 2.3e-06 27.7 0.0 4.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_CBB3 PF13442.6 gi|55378104|ref|YP_135954.1| - 0.0062 16.8 0.1 2.3 8.6 0.0 2.8 2 1 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Imm75 PF15660.6 gi|55378104|ref|YP_135954.1| - 0.015 15.6 0.0 0.035 14.4 0.0 1.6 1 0 0 1 1 1 0 Putative Immunity protein 75 Cytochrom_C PF00034.21 gi|55378104|ref|YP_135954.1| - 0.077 14.1 0.1 4.9 8.4 0.0 2.8 3 0 0 3 3 3 0 Cytochrome c NTP_transf_3 PF12804.7 gi|55378106|ref|YP_135956.1| - 5.8e-35 121.0 0.5 7.2e-35 120.7 0.5 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|55378106|ref|YP_135956.1| - 0.0047 16.9 0.0 0.013 15.4 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase FAM92 PF06730.11 gi|55378106|ref|YP_135956.1| - 0.078 12.4 0.1 0.22 10.9 0.0 1.7 2 0 0 2 2 2 0 FAM92 protein AFOR_C PF01314.18 gi|55378107|ref|YP_135957.1| - 1.9e-94 316.8 0.0 2.8e-94 316.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|55378107|ref|YP_135957.1| - 5.1e-61 206.0 0.1 7.2e-61 205.5 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain TcpE PF12648.7 gi|55378109|ref|YP_135959.1| - 0.015 15.9 0.8 0.02 15.4 0.8 1.1 1 0 0 1 1 1 0 TcpE family UCR_UQCRX_QCR9 PF05365.12 gi|55378109|ref|YP_135959.1| - 1 9.3 2.5 11 6.1 0.1 2.3 2 1 0 2 2 2 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like Zn-ribbon_8 PF09723.10 gi|55378110|ref|YP_135960.1| - 0.0012 18.9 2.3 0.0017 18.5 2.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|55378110|ref|YP_135960.1| - 0.0039 16.7 0.8 0.73 9.4 0.0 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zf_UBZ PF18439.1 gi|55378110|ref|YP_135960.1| - 0.0041 16.7 1.4 0.0093 15.5 0.1 1.9 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-RRN7 PF11781.8 gi|55378110|ref|YP_135960.1| - 0.011 15.4 2.1 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-dskA_traR PF01258.17 gi|55378110|ref|YP_135960.1| - 0.013 15.4 1.5 0.15 12.0 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4_3 PF13920.6 gi|55378110|ref|YP_135960.1| - 0.02 14.7 0.5 0.027 14.3 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.11 gi|55378110|ref|YP_135960.1| - 0.022 14.3 0.8 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RNHCP PF12647.7 gi|55378110|ref|YP_135960.1| - 0.024 14.6 0.2 0.024 14.6 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain DZR PF12773.7 gi|55378110|ref|YP_135960.1| - 0.039 14.0 1.3 0.054 13.5 1.3 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|55378110|ref|YP_135960.1| - 0.066 13.3 1.9 1.1 9.3 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|55378110|ref|YP_135960.1| - 0.07 13.1 0.4 0.079 13.0 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF5318 PF17249.2 gi|55378110|ref|YP_135960.1| - 0.12 12.1 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5318) Dyp_perox PF04261.12 gi|55378113|ref|YP_135963.1| - 0.0074 15.3 0.0 0.013 14.5 0.0 1.5 1 1 0 1 1 1 1 Dyp-type peroxidase family DUF3135 PF11333.8 gi|55378113|ref|YP_135963.1| - 0.2 11.9 0.8 20 5.5 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3135) YcaO PF02624.16 gi|55378117|ref|YP_135966.1| - 0.018 14.3 0.8 0.02 14.2 0.8 1.0 1 0 0 1 1 1 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF373 PF04123.13 gi|55378116|ref|YP_135967.1| - 0.038 13.4 1.7 0.041 13.3 1.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF2975 PF11188.8 gi|55378116|ref|YP_135967.1| - 0.055 13.4 4.2 0.064 13.1 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Nitrate_red_del PF02613.15 gi|55378118|ref|YP_135968.1| - 2e-25 89.4 0.1 2.6e-25 89.0 0.1 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit FlpD PF02662.16 gi|55378119|ref|YP_135969.1| - 5e-24 84.6 0.0 1.3e-23 83.3 0.0 1.7 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.7 gi|55378119|ref|YP_135969.1| - 6.4e-15 55.5 32.7 1.9e-06 28.3 10.7 6.0 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|55378119|ref|YP_135969.1| - 6.6e-14 52.6 21.2 0.001 19.9 0.2 6.7 6 0 0 6 6 6 4 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|55378119|ref|YP_135969.1| - 3.1e-12 45.8 48.3 0.00042 20.0 3.4 7.6 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|55378119|ref|YP_135969.1| - 4.5e-12 46.0 37.0 2.1e-05 24.6 8.8 5.4 5 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|55378119|ref|YP_135969.1| - 9.1e-07 29.2 27.5 0.017 15.6 0.3 5.9 4 2 2 6 6 6 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|55378119|ref|YP_135969.1| - 1.2e-06 28.6 34.0 5.3e-05 23.3 4.4 5.3 5 1 1 6 6 5 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|55378119|ref|YP_135969.1| - 4.7e-06 26.4 51.7 0.00034 20.6 2.2 7.1 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|55378119|ref|YP_135969.1| - 2e-05 24.6 44.5 0.0047 17.0 13.6 5.4 3 3 2 5 5 5 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55378119|ref|YP_135969.1| - 2.9e-05 24.5 29.9 0.014 15.9 0.3 6.3 6 1 1 7 7 7 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55378119|ref|YP_135969.1| - 0.0026 17.8 3.5 0.0026 17.8 3.5 7.4 8 0 0 8 8 7 3 4Fe-4S binding domain Fer4_18 PF13746.6 gi|55378119|ref|YP_135969.1| - 0.056 13.6 27.2 0.11 12.6 0.7 5.2 4 2 1 5 5 5 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|55378119|ref|YP_135969.1| - 0.17 12.5 52.9 0.085 13.4 3.0 7.6 9 0 0 9 9 7 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|55378119|ref|YP_135969.1| - 4.3 8.5 56.2 0.21 12.6 3.2 6.9 7 0 0 7 7 6 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|55378120|ref|YP_135970.1| - 2.6e-33 115.6 3.7 2.2e-32 112.6 3.7 2.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|55378120|ref|YP_135970.1| - 1.3e-18 67.1 0.1 3e-18 65.9 0.1 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|55378120|ref|YP_135970.1| - 9.3e-15 54.4 0.3 1.7e-14 53.5 0.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|55378120|ref|YP_135970.1| - 0.018 14.9 4.4 0.037 13.9 4.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|55378121|ref|YP_135971.1| - 2.2e-16 59.8 11.3 2.2e-16 59.8 11.3 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55378121|ref|YP_135971.1| - 2.5e-14 53.6 22.4 3.3e-07 30.8 8.0 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55378121|ref|YP_135971.1| - 3.6e-12 46.2 23.3 1.6e-06 28.2 7.1 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55378121|ref|YP_135971.1| - 1.9e-09 37.5 25.4 3.7e-06 27.0 6.4 3.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|55378121|ref|YP_135971.1| - 1.1e-08 34.5 34.2 2.1e-06 27.3 1.4 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|55378121|ref|YP_135971.1| - 1.8e-06 27.8 37.7 4.7e-05 23.3 1.5 5.2 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|55378121|ref|YP_135971.1| - 3.1e-06 27.2 26.3 0.00027 21.0 10.2 4.0 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55378121|ref|YP_135971.1| - 1.9e-05 24.4 35.5 0.0025 17.8 1.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|55378121|ref|YP_135971.1| - 4.3e-05 24.4 21.6 0.028 15.4 0.9 4.7 4 1 1 5 5 5 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|55378121|ref|YP_135971.1| - 0.00011 22.6 24.8 0.011 16.1 7.2 2.9 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55378121|ref|YP_135971.1| - 0.00012 22.6 23.2 0.0016 18.9 5.1 3.6 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|55378121|ref|YP_135971.1| - 0.00017 22.3 39.4 0.028 15.4 4.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|55378121|ref|YP_135971.1| - 0.0083 16.6 11.7 0.027 14.9 2.0 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|55378121|ref|YP_135971.1| - 0.84 10.4 18.3 0.48 11.2 6.7 3.2 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|55378121|ref|YP_135971.1| - 2.3 8.5 22.7 1.1 9.5 1.2 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain UPF0114 PF03350.16 gi|55378122|ref|YP_135972.1| - 0.029 14.6 0.1 0.036 14.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein family, UPF0114 BTP PF05232.12 gi|55378122|ref|YP_135972.1| - 0.054 13.6 2.6 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 Chlorhexidine efflux transporter Imm49 PF15575.6 gi|55378122|ref|YP_135972.1| - 0.22 11.3 0.1 0.36 10.6 0.1 1.3 1 0 0 1 1 1 0 Immunity protein 49 Ni_hydr_CYTB PF01292.20 gi|55378123|ref|YP_135973.1| - 3.7e-21 75.5 13.5 4.6e-21 75.2 11.9 1.8 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM PF03929.16 gi|55378123|ref|YP_135973.1| - 0.015 15.0 1.8 0.015 15.0 1.8 3.0 4 1 0 4 4 4 0 PepSY-associated TM region Asp4 PF16996.5 gi|55378123|ref|YP_135973.1| - 0.28 11.0 0.2 0.28 11.0 0.2 3.0 4 0 0 4 4 4 0 Accessory secretory protein Sec Asp4 DUF5516 PF17637.2 gi|55378123|ref|YP_135973.1| - 1 9.2 4.4 3.6 7.4 4.4 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5516) DUF2985 PF11204.8 gi|55378125|ref|YP_135975.1| - 0.03 14.5 1.3 0.038 14.2 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2985) Phage_holin_5_1 PF06946.11 gi|55378125|ref|YP_135975.1| - 0.035 14.5 0.9 0.039 14.3 0.9 1.1 1 0 0 1 1 1 0 Bacteriophage A118-like holin, Hol118 DUF3290 PF11694.8 gi|55378125|ref|YP_135975.1| - 0.16 11.9 0.8 0.18 11.8 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF2721 PF11026.8 gi|55378125|ref|YP_135975.1| - 0.72 9.7 6.3 0.77 9.6 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) IclR PF01614.18 gi|55378126|ref|YP_135976.1| - 3.7e-36 123.8 0.0 5.4e-36 123.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55378126|ref|YP_135976.1| - 2.5e-13 49.6 0.1 9.2e-13 47.8 0.0 2.0 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55378126|ref|YP_135976.1| - 5.1e-06 25.9 0.0 1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55378126|ref|YP_135976.1| - 3.2e-05 23.7 0.0 7.5e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55378126|ref|YP_135976.1| - 4.3e-05 23.3 0.0 9.6e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55378126|ref|YP_135976.1| - 7.8e-05 22.5 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|55378126|ref|YP_135976.1| - 9.5e-05 22.5 0.0 0.00022 21.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|55378126|ref|YP_135976.1| - 0.00037 20.5 0.1 0.0012 18.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|55378126|ref|YP_135976.1| - 0.00059 19.7 0.0 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|55378126|ref|YP_135976.1| - 0.00086 19.0 0.0 0.0025 17.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|55378126|ref|YP_135976.1| - 0.0021 18.0 0.0 0.0047 16.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|55378126|ref|YP_135976.1| - 0.0043 17.0 0.0 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|55378126|ref|YP_135976.1| - 0.014 15.7 0.0 0.032 14.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Phage_CI_repr PF07022.13 gi|55378126|ref|YP_135976.1| - 0.032 14.3 0.0 0.048 13.7 0.0 1.7 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF742 PF05331.11 gi|55378126|ref|YP_135976.1| - 0.054 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_10 PF04967.12 gi|55378126|ref|YP_135976.1| - 0.057 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_DeoR PF08220.12 gi|55378126|ref|YP_135976.1| - 0.081 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|55378126|ref|YP_135976.1| - 0.12 12.1 0.2 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 FAA_hydrolase PF01557.18 gi|55378127|ref|YP_135977.1| - 3e-20 72.9 0.0 1.9e-19 70.2 0.0 2.0 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrkA_C PF02080.21 gi|55378127|ref|YP_135977.1| - 0.1 12.5 0.3 1 9.3 0.1 2.3 2 0 0 2 2 2 0 TrkA-C domain Methyltransf_11 PF08241.12 gi|55378128|ref|YP_135978.1| - 0.0004 21.0 0.4 0.00058 20.5 0.4 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378128|ref|YP_135978.1| - 0.01 16.5 0.2 0.019 15.7 0.1 1.4 2 0 0 2 2 2 0 Methyltransferase domain AMP-binding PF00501.28 gi|55378129|ref|YP_135979.1| - 1.1e-77 261.4 0.0 1.5e-77 261.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55378129|ref|YP_135979.1| - 1.8e-21 76.9 0.3 3.1e-20 72.9 0.2 2.7 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Dpy-30 PF05186.13 gi|55378129|ref|YP_135979.1| - 0.048 13.4 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Dpy-30 motif DUF872 PF05915.12 gi|55378130|ref|YP_135980.1| - 1.8 8.7 4.8 0.38 10.9 1.0 1.7 2 1 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF745 PF05335.13 gi|55378131|ref|YP_135981.1| - 3.9e-05 23.5 1.2 4.6e-05 23.2 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF745) Syntaxin-6_N PF09177.11 gi|55378131|ref|YP_135981.1| - 0.00017 22.1 1.6 0.00026 21.5 1.6 1.2 1 0 0 1 1 1 1 Syntaxin 6, N-terminal RmuC PF02646.16 gi|55378131|ref|YP_135981.1| - 0.00066 18.9 0.6 0.00075 18.7 0.6 1.1 1 0 0 1 1 1 1 RmuC family Med9 PF07544.13 gi|55378131|ref|YP_135981.1| - 0.00099 19.1 0.7 0.0016 18.5 0.7 1.3 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 DegS PF05384.11 gi|55378131|ref|YP_135981.1| - 0.001 18.6 1.5 0.0013 18.2 1.5 1.1 1 0 0 1 1 1 1 Sensor protein DegS Cast PF10174.9 gi|55378131|ref|YP_135981.1| - 0.0015 16.9 5.9 0.0017 16.7 5.9 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Laminin_II PF06009.12 gi|55378131|ref|YP_135981.1| - 0.0021 18.1 2.3 0.0025 17.9 1.8 1.3 1 1 0 1 1 1 1 Laminin Domain II DUF3450 PF11932.8 gi|55378131|ref|YP_135981.1| - 0.0021 17.4 1.7 0.0028 17.0 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|55378131|ref|YP_135981.1| - 0.0024 17.9 0.5 0.0033 17.5 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|55378131|ref|YP_135981.1| - 0.0025 18.1 1.8 0.0035 17.6 1.8 1.3 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.12 gi|55378131|ref|YP_135981.1| - 0.0026 17.8 2.0 0.004 17.2 2.0 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|55378131|ref|YP_135981.1| - 0.003 16.5 1.3 0.0031 16.5 1.3 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein GldM_N PF12081.8 gi|55378131|ref|YP_135981.1| - 0.0031 17.6 1.5 0.0036 17.4 1.5 1.2 1 0 0 1 1 1 1 GldM N-terminal domain ATG16 PF08614.11 gi|55378131|ref|YP_135981.1| - 0.0034 17.7 3.0 0.004 17.4 3.0 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) PspA_IM30 PF04012.12 gi|55378131|ref|YP_135981.1| - 0.0057 16.3 2.8 0.0065 16.1 2.8 1.2 1 0 0 1 1 1 1 PspA/IM30 family CENP-F_leu_zip PF10473.9 gi|55378131|ref|YP_135981.1| - 0.0083 16.2 1.5 0.0091 16.0 1.5 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Herpes_UL6 PF01763.16 gi|55378131|ref|YP_135981.1| - 0.011 14.3 0.7 0.011 14.3 0.7 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Med16 PF11635.8 gi|55378131|ref|YP_135981.1| - 0.013 13.5 0.0 0.015 13.3 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit 16 NPV_P10 PF05531.12 gi|55378131|ref|YP_135981.1| - 0.013 16.0 1.6 0.018 15.5 1.5 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Phage_GP20 PF06810.11 gi|55378131|ref|YP_135981.1| - 0.015 15.1 5.1 0.018 14.9 5.1 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Ax_dynein_light PF10211.9 gi|55378131|ref|YP_135981.1| - 0.024 14.6 2.1 0.03 14.3 2.1 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain ADIP PF11559.8 gi|55378131|ref|YP_135981.1| - 0.024 14.7 1.1 0.031 14.4 1.1 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding FlaC_arch PF05377.11 gi|55378131|ref|YP_135981.1| - 0.03 14.7 1.4 0.05 14.0 1.4 1.6 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Atg14 PF10186.9 gi|55378131|ref|YP_135981.1| - 0.03 13.4 0.2 0.03 13.4 0.2 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 T3SSipB PF16535.5 gi|55378131|ref|YP_135981.1| - 0.034 14.6 4.9 0.039 14.4 4.9 1.0 1 0 0 1 1 1 0 Type III cell invasion protein SipB bZIP_1 PF00170.21 gi|55378131|ref|YP_135981.1| - 0.035 14.2 0.7 0.054 13.6 0.7 1.4 1 0 0 1 1 1 0 bZIP transcription factor Prominin PF05478.11 gi|55378131|ref|YP_135981.1| - 0.035 12.1 0.3 0.034 12.1 0.3 1.0 1 0 0 1 1 1 0 Prominin DivIVA PF05103.13 gi|55378131|ref|YP_135981.1| - 0.036 14.2 4.7 0.04 14.0 4.7 1.1 1 0 0 1 1 1 0 DivIVA protein TBK1_CCD1 PF18394.1 gi|55378131|ref|YP_135981.1| - 0.039 13.5 0.7 0.065 12.8 0.3 1.3 1 1 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 LpxB PF02684.15 gi|55378131|ref|YP_135981.1| - 0.053 12.4 0.1 0.055 12.3 0.1 1.0 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase HSBP1 PF06825.12 gi|55378131|ref|YP_135981.1| - 0.053 13.4 0.2 3.7 7.5 0.2 2.2 1 1 1 2 2 2 0 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|55378131|ref|YP_135981.1| - 0.055 13.7 3.6 0.18 12.0 3.6 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Swi5 PF07061.11 gi|55378131|ref|YP_135981.1| - 0.056 13.5 2.1 4.8 7.3 2.1 2.4 1 1 0 1 1 1 0 Swi5 TMPIT PF07851.13 gi|55378131|ref|YP_135981.1| - 0.059 12.6 0.4 0.062 12.6 0.4 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF2937 PF11157.8 gi|55378131|ref|YP_135981.1| - 0.059 13.1 1.7 1.2 8.9 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) TolA_bind_tri PF16331.5 gi|55378131|ref|YP_135981.1| - 0.061 13.4 1.8 0.12 12.5 1.8 1.5 1 1 0 1 1 1 0 TolA binding protein trimerisation Fib_alpha PF08702.10 gi|55378131|ref|YP_135981.1| - 0.062 13.5 0.5 0.069 13.3 0.5 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Spc24 PF08286.11 gi|55378131|ref|YP_135981.1| - 0.063 13.5 3.2 0.09 13.0 3.2 1.4 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 COG2 PF06148.11 gi|55378131|ref|YP_135981.1| - 0.064 13.3 0.8 0.077 13.1 0.8 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FlxA PF14282.6 gi|55378131|ref|YP_135981.1| - 0.074 13.1 1.1 0.11 12.5 1.1 1.3 1 0 0 1 1 1 0 FlxA-like protein DUF2730 PF10805.8 gi|55378131|ref|YP_135981.1| - 0.078 13.1 0.7 0.1 12.7 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) YabA PF06156.13 gi|55378131|ref|YP_135981.1| - 0.09 13.4 0.2 0.11 13.2 0.2 1.2 1 0 0 1 1 1 0 Initiation control protein YabA Metal_resist PF13801.6 gi|55378131|ref|YP_135981.1| - 0.098 12.8 2.3 0.14 12.3 1.8 1.5 1 1 1 2 2 2 0 Heavy-metal resistance ZapB PF06005.12 gi|55378131|ref|YP_135981.1| - 0.13 12.7 5.2 0.19 12.2 5.2 1.1 1 0 0 1 1 1 0 Cell division protein ZapB TMF_DNA_bd PF12329.8 gi|55378131|ref|YP_135981.1| - 0.13 12.2 4.6 0.26 11.3 4.6 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding XhlA PF10779.9 gi|55378131|ref|YP_135981.1| - 0.15 12.3 2.8 0.21 11.8 1.8 1.8 1 1 1 2 2 2 0 Haemolysin XhlA DUF4549 PF15082.6 gi|55378131|ref|YP_135981.1| - 0.45 10.3 2.0 1.7 8.4 0.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4549) Histone_HNS PF00816.21 gi|55378131|ref|YP_135981.1| - 0.46 11.3 3.0 0.69 10.8 1.5 1.9 1 1 1 2 2 2 0 H-NS histone family DUF5339 PF17274.2 gi|55378131|ref|YP_135981.1| - 0.52 11.2 2.8 0.57 11.1 0.6 2.2 2 1 0 2 2 1 0 Family of unknown function (DUF5339) SlyX PF04102.12 gi|55378131|ref|YP_135981.1| - 0.54 10.9 3.7 3.2 8.4 3.7 2.0 1 1 0 1 1 1 0 SlyX DUF998 PF06197.13 gi|55378132|ref|YP_135982.1| - 1.8e-29 102.6 13.7 2.2e-29 102.4 13.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Ni_hydr_CYTB PF01292.20 gi|55378132|ref|YP_135982.1| - 0.051 13.2 3.7 0.16 11.5 3.7 1.8 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 PAS_4 PF08448.10 gi|55378133|ref|YP_135983.1| - 2.2e-14 53.6 0.6 6e-14 52.2 0.1 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|55378133|ref|YP_135983.1| - 2.9e-10 40.6 0.0 5.9e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|55378133|ref|YP_135983.1| - 2.3e-07 30.8 0.1 5.6e-07 29.5 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|55378133|ref|YP_135983.1| - 5.7e-05 23.7 0.1 0.00028 21.4 0.0 2.3 3 1 1 4 4 4 1 PAS domain PAS_9 PF13426.7 gi|55378133|ref|YP_135983.1| - 0.00011 22.3 0.0 0.0011 19.1 0.0 2.4 2 1 1 3 3 3 1 PAS domain HATPase_c_3 PF13589.6 gi|55378133|ref|YP_135983.1| - 0.0034 17.2 0.0 0.01 15.6 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ApoLp-III PF07464.11 gi|55378133|ref|YP_135983.1| - 0.13 12.4 1.1 11 6.2 0.1 3.2 3 0 0 3 3 3 0 Apolipophorin-III precursor (apoLp-III) HisKA PF00512.25 gi|55378133|ref|YP_135983.1| - 0.15 12.1 4.2 0.38 10.8 3.9 1.9 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain DUF2730 PF10805.8 gi|55378133|ref|YP_135983.1| - 0.37 10.9 2.0 1.7 8.8 0.4 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Med9 PF07544.13 gi|55378133|ref|YP_135983.1| - 0.63 10.2 7.2 1.7 8.8 0.1 3.0 2 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF3140 PF11338.8 gi|55378133|ref|YP_135983.1| - 0.69 10.4 4.0 18 5.9 0.2 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3140) MS_channel PF00924.18 gi|55378134|ref|YP_135984.1| - 7e-56 189.0 0.1 1.1e-55 188.4 0.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3278 PF11683.8 gi|55378134|ref|YP_135984.1| - 0.0021 18.2 0.2 0.004 17.2 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3278) CRS1_YhbY PF01985.21 gi|55378135|ref|YP_135985.1| - 6.9e-11 42.2 0.0 8.6e-11 41.9 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Tubulin PF00091.25 gi|55378135|ref|YP_135985.1| - 0.019 15.2 0.0 0.021 15.0 0.0 1.1 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain Glyco_hydro_10 PF00331.20 gi|55378135|ref|YP_135985.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 10 Rpr2 PF04032.16 gi|55378136|ref|YP_135986.1| - 3e-12 46.7 0.5 3.7e-12 46.4 0.5 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain CD225 PF04505.12 gi|55378136|ref|YP_135986.1| - 0.3 11.2 1.0 5.5 7.2 0.5 2.0 2 0 0 2 2 2 0 Interferon-induced transmembrane protein Glyco_trans_1_4 PF13692.6 gi|55378137|ref|YP_135987.1| - 4.9e-21 75.6 0.0 3.4e-19 69.6 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|55378137|ref|YP_135987.1| - 1.3e-19 70.3 0.0 1.6e-18 66.8 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|55378137|ref|YP_135987.1| - 1.8e-16 60.6 0.1 4.8e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|55378137|ref|YP_135987.1| - 2.2e-16 60.0 0.3 4.7e-16 59.0 0.3 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|55378137|ref|YP_135987.1| - 1.7e-08 35.1 0.2 4.3e-08 33.8 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain MFS_1 PF07690.16 gi|55378138|ref|YP_135988.1| - 4.7e-21 75.1 62.8 5.3e-11 42.0 31.5 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|55378138|ref|YP_135988.1| - 6.3e-09 35.2 13.9 7.3e-05 21.8 13.9 2.2 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|55378138|ref|YP_135988.1| - 0.0091 14.9 2.4 0.0091 14.9 2.4 3.4 2 2 0 3 3 3 1 Sugar (and other) transporter MFS_2 PF13347.6 gi|55378138|ref|YP_135988.1| - 1.4 7.3 33.0 0.011 14.3 6.1 2.8 3 1 0 3 3 3 0 MFS/sugar transport protein Glyco_transf_4 PF13439.6 gi|55378139|ref|YP_135989.1| - 4.2e-28 98.5 0.1 9.7e-28 97.3 0.1 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|55378139|ref|YP_135989.1| - 3e-27 95.3 0.0 6.8e-27 94.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55378139|ref|YP_135989.1| - 1.9e-21 76.9 0.0 3.8e-20 72.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|55378139|ref|YP_135989.1| - 1.8e-17 64.3 0.7 2.9e-16 60.3 0.2 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|55378139|ref|YP_135989.1| - 3e-05 24.3 0.0 7.5e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|55378139|ref|YP_135989.1| - 0.00079 19.5 0.0 0.0039 17.2 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like Peptidase_M48 PF01435.18 gi|55378141|ref|YP_135991.1| - 2.7e-24 86.0 0.0 8.1e-24 84.5 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|55378141|ref|YP_135991.1| - 2.8e-05 23.5 0.0 5.9e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF45 PF01863.17 gi|55378141|ref|YP_135991.1| - 0.0051 16.9 0.0 0.0083 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF45 SprT-like PF10263.9 gi|55378141|ref|YP_135991.1| - 0.078 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 SprT-like family Amidase PF01425.21 gi|55378142|ref|YP_135992.1| - 1.5e-145 485.6 0.7 1.9e-145 485.3 0.7 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|55378143|ref|YP_135993.1| - 1.3e-12 47.8 4.1 1.3e-12 47.8 4.1 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit TFIIB PF00382.19 gi|55378144|ref|YP_135994.1| - 5.4e-41 138.5 0.1 7.2e-20 70.8 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55378144|ref|YP_135994.1| - 1e-17 63.4 2.9 2.5e-17 62.1 2.9 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|55378144|ref|YP_135994.1| - 0.0024 17.9 0.0 0.027 14.6 0.0 2.1 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|55378144|ref|YP_135994.1| - 0.02 14.4 0.1 0.02 14.4 0.1 3.8 5 0 0 5 5 5 0 Sigma-70, region 4 Anti-TRAP PF15777.5 gi|55378144|ref|YP_135994.1| - 0.043 13.8 0.6 0.081 12.9 0.6 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein OrfB_Zn_ribbon PF07282.11 gi|55378144|ref|YP_135994.1| - 0.089 12.7 1.6 0.18 11.8 1.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|55378144|ref|YP_135994.1| - 0.094 12.1 0.1 0.3 10.5 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 A2L_zn_ribbon PF08792.10 gi|55378144|ref|YP_135994.1| - 0.18 11.5 1.6 0.8 9.5 1.6 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|55378144|ref|YP_135994.1| - 0.48 10.1 2.1 8.4 6.1 0.2 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|55378144|ref|YP_135994.1| - 5.9 7.1 5.6 21 5.3 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.28 gi|55378145|ref|YP_135995.1| - 1.4e-14 54.3 0.2 1.8e-14 53.9 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain Asn_synthase PF00733.21 gi|55378146|ref|YP_135996.1| - 7e-32 111.5 3.4 7.4e-19 68.6 0.4 2.1 1 1 1 2 2 2 2 Asparagine synthase HemolysinCabind PF00353.19 gi|55378146|ref|YP_135996.1| - 0.11 12.6 1.0 0.3 11.1 1.0 1.8 1 0 0 1 1 1 0 RTX calcium-binding nonapeptide repeat (4 copies) PHP_C PF13263.6 gi|55378147|ref|YP_135997.1| - 2.9e-24 84.6 0.4 2.9e-24 84.6 0.4 1.6 2 0 0 2 2 2 1 PHP-associated Radical_SAM PF04055.21 gi|55378148|ref|YP_135998.1| - 9.8e-22 78.1 0.1 5.1e-21 75.8 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|55378148|ref|YP_135998.1| - 4.1e-11 43.3 0.0 1.2e-10 41.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|55378148|ref|YP_135998.1| - 3.2e-06 27.3 0.0 2e-05 24.7 0.0 2.2 2 1 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|55378148|ref|YP_135998.1| - 5.1e-05 23.7 0.0 0.00013 22.4 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain BRCC36_C PF18110.1 gi|55378148|ref|YP_135998.1| - 0.037 14.2 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 BRCC36 C-terminal helical domain PaaB PF06243.11 gi|55378149|ref|YP_135999.1| - 1e-08 35.3 0.0 1.1e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B DsbD PF02683.15 gi|55378151|ref|YP_136001.1| - 0.0067 16.3 1.4 0.0067 16.3 1.4 2.1 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.15 gi|55378152|ref|YP_136002.1| - 1.9e-16 60.6 16.1 1.7e-15 57.5 16.1 2.0 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|55378152|ref|YP_136002.1| - 3.4e-10 40.2 14.4 1.3e-09 38.3 14.0 1.9 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region ABC_tran PF00005.27 gi|55378153|ref|YP_136003.1| - 5.8e-30 104.6 0.0 7.7e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378153|ref|YP_136003.1| - 1e-10 41.9 1.5 0.00017 21.5 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|55378153|ref|YP_136003.1| - 4.5e-07 30.4 0.8 1e-06 29.3 0.7 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|55378153|ref|YP_136003.1| - 8.6e-05 23.1 0.1 0.00011 22.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55378153|ref|YP_136003.1| - 0.00014 21.5 0.2 0.00025 20.7 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|55378153|ref|YP_136003.1| - 0.0011 17.7 0.0 0.0015 17.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|55378153|ref|YP_136003.1| - 0.0025 18.1 0.0 0.0038 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55378153|ref|YP_136003.1| - 0.0026 18.2 0.0 0.017 15.6 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|55378153|ref|YP_136003.1| - 0.0066 16.2 0.0 0.0086 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.6 gi|55378153|ref|YP_136003.1| - 0.0066 16.7 0.1 0.012 15.9 0.1 1.4 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.8 gi|55378153|ref|YP_136003.1| - 0.0069 14.0 0.6 0.0093 13.5 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|55378153|ref|YP_136003.1| - 0.0099 16.0 0.2 0.023 14.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|55378153|ref|YP_136003.1| - 0.011 15.3 0.5 0.025 14.2 0.3 1.8 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.19 gi|55378153|ref|YP_136003.1| - 0.014 14.8 0.1 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|55378153|ref|YP_136003.1| - 0.015 15.3 0.1 0.052 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|55378153|ref|YP_136003.1| - 0.015 15.2 1.6 0.016 15.2 0.1 1.7 2 1 0 2 2 2 0 NACHT domain AAA_22 PF13401.6 gi|55378153|ref|YP_136003.1| - 0.019 15.2 0.7 0.045 14.0 0.7 2.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|55378153|ref|YP_136003.1| - 0.019 14.2 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|55378153|ref|YP_136003.1| - 0.031 13.9 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|55378153|ref|YP_136003.1| - 0.032 14.2 0.1 0.086 12.7 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|55378153|ref|YP_136003.1| - 0.038 14.5 0.0 0.09 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|55378153|ref|YP_136003.1| - 0.063 13.0 0.1 0.13 12.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|55378153|ref|YP_136003.1| - 0.066 12.9 0.0 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|55378153|ref|YP_136003.1| - 0.1 12.6 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRPRB PF09439.10 gi|55378153|ref|YP_136003.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit G-alpha PF00503.20 gi|55378153|ref|YP_136003.1| - 0.12 11.5 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Mg_chelatase PF01078.21 gi|55378153|ref|YP_136003.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DLIC PF05783.11 gi|55378153|ref|YP_136003.1| - 0.19 10.5 0.0 0.27 10.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) PduV-EutP PF10662.9 gi|55378153|ref|YP_136003.1| - 0.24 11.2 0.0 0.45 10.3 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|55378153|ref|YP_136003.1| - 0.27 10.8 0.5 0.48 10.0 0.3 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PEPCK_ATP PF01293.20 gi|55378153|ref|YP_136003.1| - 0.34 9.5 0.3 0.47 9.1 0.3 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase CcmB PF03379.13 gi|55378154|ref|YP_136004.1| - 1.8e-19 70.1 18.2 2.2e-19 69.8 18.2 1.0 1 0 0 1 1 1 1 CcmB protein ABC2_membrane PF01061.24 gi|55378154|ref|YP_136004.1| - 2.4e-08 33.7 8.5 2.7e-08 33.5 8.5 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|55378154|ref|YP_136004.1| - 8.6e-06 25.1 6.9 8.6e-06 25.1 6.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|55378154|ref|YP_136004.1| - 1.3e-05 25.2 9.6 2.8e-05 24.1 9.6 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|55378154|ref|YP_136004.1| - 0.012 14.9 17.5 0.04 13.2 17.4 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|55378154|ref|YP_136004.1| - 0.025 14.1 5.8 0.043 13.4 5.8 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|55378154|ref|YP_136004.1| - 0.033 13.3 6.1 0.053 12.6 6.1 1.3 1 1 0 1 1 1 0 Membrane protein of 12 TMs Cytochrom_C_asm PF01578.20 gi|55378155|ref|YP_136005.1| - 1.5e-24 87.0 10.6 1.5e-24 87.0 10.6 3.1 2 1 1 3 3 3 1 Cytochrome C assembly protein Cyt_c_ox_IV PF12270.8 gi|55378155|ref|YP_136005.1| - 5.6 7.1 11.1 0.19 11.9 1.0 3.6 3 0 0 3 3 3 0 Cytochrome c oxidase subunit IV Thioredoxin_7 PF13899.6 gi|55378156|ref|YP_136006.1| - 4.7e-11 42.7 0.0 6.1e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|55378156|ref|YP_136006.1| - 2.2e-07 30.8 0.0 3.3e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredox_DsbH PF03190.15 gi|55378156|ref|YP_136006.1| - 4.4e-06 26.8 0.0 5.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_2 PF13098.6 gi|55378156|ref|YP_136006.1| - 8.4e-06 26.2 0.0 1.6e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|55378156|ref|YP_136006.1| - 0.00011 22.1 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55378156|ref|YP_136006.1| - 0.00012 21.9 0.0 0.00013 21.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.6 gi|55378156|ref|YP_136006.1| - 0.015 15.6 0.0 0.024 15.0 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like CCP_MauG PF03150.14 gi|55378157|ref|YP_136007.1| - 2.3e-55 187.4 0.0 4.8e-51 173.4 0.0 2.3 2 0 0 2 2 2 2 Di-haem cytochrome c peroxidase Cytochrom_C PF00034.21 gi|55378157|ref|YP_136007.1| - 1.1e-08 36.1 3.3 0.0025 18.9 1.6 3.3 3 1 0 3 3 3 2 Cytochrome c Cytochrome_CBB3 PF13442.6 gi|55378157|ref|YP_136007.1| - 4.2e-05 23.8 0.8 3.5 8.0 0.1 3.5 3 0 0 3 3 3 2 Cytochrome C oxidase, cbb3-type, subunit III PSCyt3 PF07627.11 gi|55378157|ref|YP_136007.1| - 0.023 14.9 0.0 7 7.0 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1588) Cytochrome_C7 PF14522.6 gi|55378157|ref|YP_136007.1| - 0.027 14.5 0.1 7.4 6.7 0.0 2.6 2 0 0 2 2 2 0 Cytochrome c7 and related cytochrome c DUF1924 PF09086.11 gi|55378157|ref|YP_136007.1| - 0.037 14.4 0.1 0.77 10.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1924) Cytochrom_C_asm PF01578.20 gi|55378158|ref|YP_136008.1| - 8.6e-20 71.4 18.8 3.6e-19 69.4 18.6 1.8 2 0 0 2 2 2 1 Cytochrome C assembly protein MHYT PF03707.16 gi|55378158|ref|YP_136008.1| - 0.022 14.9 3.1 4.6 7.5 0.9 2.7 2 0 0 2 2 2 0 Bacterial signalling protein N terminal repeat Vps55 PF04133.14 gi|55378158|ref|YP_136008.1| - 3.1 7.8 10.3 8.5 6.4 5.5 3.0 1 1 1 2 2 2 0 Vacuolar protein sorting 55 Oxidored_molyb PF00174.19 gi|55378160|ref|YP_136010.1| - 3.2e-37 127.8 0.0 5e-37 127.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|55378160|ref|YP_136010.1| - 5.2e-06 26.5 0.6 8.1e-05 22.7 0.3 2.6 2 1 0 2 2 2 1 Mo-co oxidoreductase dimerisation domain CcmE PF03100.15 gi|55378161|ref|YP_136011.1| - 5.5e-15 55.5 0.1 1.1e-14 54.5 0.0 1.5 2 0 0 2 2 2 1 CcmE Copper-bind PF00127.20 gi|55378162|ref|YP_136012.1| - 1.6e-17 63.8 1.1 7.8e-17 61.5 1.1 2.1 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|55378162|ref|YP_136012.1| - 0.00046 20.3 0.0 0.00091 19.3 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|55378162|ref|YP_136012.1| - 0.039 13.8 0.3 0.11 12.4 0.3 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|55378162|ref|YP_136012.1| - 0.046 13.1 0.2 0.14 11.6 0.2 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Cu-oxidase_2 PF07731.14 gi|55378163|ref|YP_136013.1| - 1.9e-29 102.1 14.7 2e-20 72.9 3.2 3.0 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|55378163|ref|YP_136013.1| - 6.1e-23 81.1 6.6 6.8e-18 64.8 1.3 2.5 2 0 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|55378163|ref|YP_136013.1| - 1e-09 38.7 0.1 2.9e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase TAT_signal PF10518.9 gi|55378163|ref|YP_136013.1| - 0.0003 20.5 1.4 0.00047 19.9 1.4 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|55378163|ref|YP_136013.1| - 0.0051 16.9 0.1 0.21 11.7 0.0 2.7 2 2 0 2 2 2 1 Cupredoxin-like domain HTH_20 PF12840.7 gi|55378164|ref|YP_136014.1| - 1.8e-08 34.3 0.1 3e-08 33.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55378164|ref|YP_136014.1| - 9.1e-06 25.4 0.2 1.8e-05 24.4 0.2 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|55378164|ref|YP_136014.1| - 0.00022 21.0 0.1 0.00035 20.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|55378164|ref|YP_136014.1| - 0.002 17.6 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|55378164|ref|YP_136014.1| - 0.051 13.5 0.1 0.072 13.0 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.15 gi|55378164|ref|YP_136014.1| - 0.082 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF5353 PF17304.2 gi|55378165|ref|YP_136015.1| - 0.043 13.6 0.8 0.043 13.6 0.8 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5353) TraL PF07178.11 gi|55378165|ref|YP_136015.1| - 0.81 10.2 3.9 2.5 8.6 0.2 2.5 1 1 1 2 2 2 0 TraL protein CPP1-like PF11833.8 gi|55378166|ref|YP_136016.1| - 0.0021 17.8 3.8 0.0024 17.6 3.8 1.1 1 0 0 1 1 1 1 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2249 PF10006.9 gi|55378168|ref|YP_136018.1| - 2.3e-12 46.6 0.2 3.7e-12 45.9 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|55378168|ref|YP_136018.1| - 6.6e-05 22.7 0.0 8.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA TatD_DNase PF01026.21 gi|55378168|ref|YP_136018.1| - 0.029 13.7 0.1 0.03 13.7 0.1 1.1 1 0 0 1 1 1 0 TatD related DNase GlutR_dimer PF00745.20 gi|55378169|ref|YP_136019.1| - 3.4e-11 43.4 0.6 3.9e-11 43.2 0.6 1.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain ANAPC2 PF08672.11 gi|55378169|ref|YP_136019.1| - 0.15 12.6 0.0 0.35 11.4 0.0 1.6 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 Cupin_2 PF07883.11 gi|55378170|ref|YP_136020.1| - 2.9e-10 39.7 0.0 4.8e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.6 gi|55378170|ref|YP_136020.1| - 0.0011 18.7 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 gi|55378170|ref|YP_136020.1| - 0.014 15.3 0.0 0.02 14.8 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C_2 PF17954.1 gi|55378170|ref|YP_136020.1| - 0.014 15.5 0.0 0.024 14.8 0.0 1.2 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain HutD PF05962.11 gi|55378170|ref|YP_136020.1| - 0.068 13.1 0.0 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 HutD DUF2249 PF10006.9 gi|55378171|ref|YP_136021.1| - 2.9e-24 84.7 0.1 3.2e-24 84.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) NnrU PF07298.11 gi|55378174|ref|YP_136024.1| - 0.042 13.4 1.0 0.16 11.5 0.2 1.8 1 1 1 2 2 2 0 NnrU protein DUF3978 PF13123.6 gi|55378174|ref|YP_136024.1| - 0.19 11.5 0.0 0.25 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3978) AIRS PF00586.24 gi|55378175|ref|YP_136025.1| - 1.1e-40 138.2 4.8 4.7e-23 81.7 0.1 3.0 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|55378175|ref|YP_136025.1| - 4.9e-40 137.2 5.2 4e-30 105.0 0.8 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|55378175|ref|YP_136025.1| - 2.9e-07 30.9 0.2 7.2e-07 29.7 0.2 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain HATPase_c PF02518.26 gi|55378176|ref|YP_136026.1| - 4.1e-20 72.4 0.0 7.6e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55378176|ref|YP_136026.1| - 1e-11 44.7 3.4 4.2e-11 42.7 1.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|55378176|ref|YP_136026.1| - 2.3e-06 27.8 0.6 1e-05 25.7 0.1 2.2 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|55378176|ref|YP_136026.1| - 1.3e-05 25.4 0.0 3.2e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|55378176|ref|YP_136026.1| - 0.0002 21.3 0.0 0.00042 20.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|55378176|ref|YP_136026.1| - 0.0003 21.0 0.1 0.001 19.3 0.0 1.9 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|55378176|ref|YP_136026.1| - 0.0025 17.8 0.2 0.014 15.4 0.0 2.3 2 0 0 2 2 2 1 PAS domain HSDR_N PF04313.14 gi|55378176|ref|YP_136026.1| - 0.018 15.0 0.6 0.049 13.6 0.0 1.9 2 1 1 3 3 3 0 Type I restriction enzyme R protein N terminus (HSDR_N) HATPase_c_3 PF13589.6 gi|55378176|ref|YP_136026.1| - 0.027 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIST PF08495.10 gi|55378177|ref|YP_136027.1| - 2.8e-26 92.6 3.4 7.3e-26 91.2 1.3 2.1 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 gi|55378177|ref|YP_136027.1| - 5.3e-22 78.2 0.1 1.5e-21 76.7 0.1 1.8 2 0 0 2 2 2 1 FIST C domain His_biosynth PF00977.21 gi|55378179|ref|YP_136029.1| - 4.3e-80 268.5 0.4 4.9e-80 268.3 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|55378179|ref|YP_136029.1| - 6e-09 35.4 0.0 3.5e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|55378179|ref|YP_136029.1| - 4.3e-07 29.5 1.3 0.00048 19.5 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|55378179|ref|YP_136029.1| - 3.3e-06 26.7 1.4 0.0029 17.1 0.2 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|55378179|ref|YP_136029.1| - 0.0013 18.2 0.1 0.0092 15.4 0.1 2.0 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|55378179|ref|YP_136029.1| - 0.0037 16.6 0.2 0.14 11.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|55378179|ref|YP_136029.1| - 0.0076 15.5 0.3 0.063 12.5 0.0 2.0 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|55378179|ref|YP_136029.1| - 0.015 14.3 0.6 0.033 13.2 0.1 1.7 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain zinc_ribbon_2 PF13240.6 gi|55378180|ref|YP_136030.1| - 9.5e-07 28.3 19.5 0.0009 18.9 6.6 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Cytochrom_c3_2 PF14537.6 gi|55378180|ref|YP_136030.1| - 0.011 16.2 4.8 1.5 9.3 0.7 2.2 2 0 0 2 2 2 0 Cytochrome c3 DZR PF12773.7 gi|55378180|ref|YP_136030.1| - 0.033 14.2 11.4 0.15 12.1 11.7 1.9 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|55378180|ref|YP_136030.1| - 0.15 12.1 9.7 1.1 9.3 1.4 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DDE_Tnp_1_7 PF13843.6 gi|55378180|ref|YP_136030.1| - 0.18 11.1 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 Transposase IS4 zinc_ribbon_15 PF17032.5 gi|55378180|ref|YP_136030.1| - 0.27 12.0 4.0 12 6.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon family DUF1451 PF07295.11 gi|55378180|ref|YP_136030.1| - 4.1 7.4 12.1 0.5 10.4 2.4 2.3 1 1 1 2 2 2 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|55378180|ref|YP_136030.1| - 4.4 7.5 17.1 0.9 9.7 2.5 2.9 3 0 0 3 3 3 0 Zinc ribbon domain RNA_pol_L_2 PF13656.6 gi|55378181|ref|YP_136031.1| - 3.5e-17 61.9 0.0 4.2e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|55378181|ref|YP_136031.1| - 0.00012 21.5 0.1 0.0002 20.7 0.1 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zf-C2H2 PF00096.26 gi|55378182|ref|YP_136032.1| - 0.00011 22.4 0.1 0.00016 21.9 0.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type V_ATPase_prox PF18274.1 gi|55378182|ref|YP_136032.1| - 0.044 13.8 1.4 0.093 12.7 1.4 1.5 1 1 0 1 1 1 0 Vacuolar ATPase Subunit I N-terminal proximal lobe zf-C2H2_4 PF13894.6 gi|55378182|ref|YP_136032.1| - 0.046 14.6 0.2 0.07 14.0 0.2 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger PyrI_C PF02748.15 gi|55378182|ref|YP_136032.1| - 0.086 12.8 0.2 0.2 11.6 0.0 1.6 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain COX3 PF00510.18 gi|55378183|ref|YP_136034.1| - 1.3e-34 120.2 20.0 1.8e-34 119.8 20.0 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Zn_Tnp_IS1595 PF12760.7 gi|55378185|ref|YP_136035.1| - 0.0072 16.3 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55378185|ref|YP_136035.1| - 0.037 14.1 0.1 0.06 13.5 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain LptE PF04390.12 gi|55378186|ref|YP_136036.1| - 0.011 16.4 1.9 3.1 8.5 1.9 2.3 1 1 0 1 1 1 0 Lipopolysaccharide-assembly PGF-CTERM PF18204.1 gi|55378186|ref|YP_136036.1| - 0.062 13.3 1.5 0.062 13.3 1.5 1.8 2 0 0 2 2 2 0 PGF-CTERM motif ADH_N PF08240.12 gi|55378187|ref|YP_136037.1| - 1.9e-28 98.5 1.3 1.9e-28 98.5 1.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|55378187|ref|YP_136037.1| - 1.5e-16 60.5 1.2 2.1e-16 60.1 0.3 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|55378187|ref|YP_136037.1| - 5e-07 30.8 0.4 8.4e-07 30.1 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|55378187|ref|YP_136037.1| - 1.2 9.2 5.4 3.9 7.6 5.4 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DNA_ligase_IV PF11411.8 gi|55378188|ref|YP_136038.1| - 0.36 11.0 0.3 0.36 11.0 0.3 2.0 2 0 0 2 2 2 0 DNA ligase IV Usp PF00582.26 gi|55378189|ref|YP_136039.1| - 2.6e-18 66.9 1.6 3.5e-18 66.5 1.6 1.2 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.19 gi|55378189|ref|YP_136039.1| - 0.0068 16.4 0.0 0.0093 16.0 0.0 1.4 1 0 0 1 1 1 1 B12 binding domain Met_10 PF02475.16 gi|55378190|ref|YP_136040.1| - 1.5e-58 197.9 0.0 1.9e-58 197.5 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|55378190|ref|YP_136040.1| - 2.1e-14 53.1 0.0 7.2e-14 51.4 0.0 1.9 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|55378190|ref|YP_136040.1| - 1.4e-07 32.1 0.0 4.6e-07 30.5 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|55378190|ref|YP_136040.1| - 1.8e-07 30.8 0.0 2.7e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.13 gi|55378190|ref|YP_136040.1| - 2.4e-05 23.9 0.0 3.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|55378190|ref|YP_136040.1| - 2.4e-05 23.9 0.0 0.00021 20.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|55378190|ref|YP_136040.1| - 0.00028 20.6 0.1 0.0018 18.0 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|55378190|ref|YP_136040.1| - 0.00058 20.5 0.0 0.0016 19.0 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378190|ref|YP_136040.1| - 0.0017 18.2 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|55378190|ref|YP_136040.1| - 0.0024 18.9 0.1 0.064 14.3 0.0 2.5 3 0 0 3 3 2 1 Methyltransferase domain DNA_methylase PF00145.17 gi|55378190|ref|YP_136040.1| - 0.0057 16.0 0.0 0.0084 15.5 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase UPF0020 PF01170.18 gi|55378190|ref|YP_136040.1| - 0.0078 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|55378190|ref|YP_136040.1| - 0.053 12.7 0.0 0.075 12.2 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase tRNA_U5-meth_tr PF05958.11 gi|55378190|ref|YP_136040.1| - 0.11 11.5 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase TP_methylase PF00590.20 gi|55378191|ref|YP_136041.1| - 3.9e-20 72.7 1.0 4.7e-20 72.4 1.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.10 gi|55378192|ref|YP_136042.1| - 9.1e-19 68.0 17.6 9.1e-19 68.0 17.6 1.9 1 1 1 2 2 2 2 Transmembrane exosortase (Exosortase_EpsH) PGF-CTERM PF18204.1 gi|55378193|ref|YP_136043.1| - 0.0011 18.9 8.6 0.002 18.0 8.6 1.4 1 0 0 1 1 1 1 PGF-CTERM motif DUF4690 PF15756.5 gi|55378193|ref|YP_136043.1| - 2.8 8.6 12.3 0.087 13.4 3.6 3.1 3 0 0 3 3 3 0 Small Novel Rich in Cartilage Glyoxalase PF00903.25 gi|55378194|ref|YP_136044.1| - 6.8e-21 74.8 3.3 1.5e-11 44.6 0.4 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|55378194|ref|YP_136044.1| - 1.4e-08 35.5 2.2 0.0013 19.5 0.2 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|55378194|ref|YP_136044.1| - 4e-08 33.5 1.3 0.0068 16.7 0.1 3.2 2 2 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|55378194|ref|YP_136044.1| - 3.7e-05 23.9 1.0 0.67 10.0 0.1 3.9 2 2 0 2 2 2 2 Glyoxalase-like domain DUF1772 PF08592.11 gi|55378195|ref|YP_136045.1| - 0.88 9.9 9.7 0.24 11.7 3.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) MMR_HSR1_Xtn PF16897.5 gi|55378196|ref|YP_136046.1| - 1.2e-29 102.4 0.3 4.4e-29 100.6 0.1 2.0 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|55378196|ref|YP_136046.1| - 1e-22 80.3 0.0 1.9e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|55378196|ref|YP_136046.1| - 2.6e-16 59.4 0.0 4.6e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|55378196|ref|YP_136046.1| - 1.6e-12 47.2 0.1 1.8e-11 43.8 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|55378196|ref|YP_136046.1| - 1.2e-05 25.3 0.5 0.027 14.4 0.1 2.7 3 0 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|55378196|ref|YP_136046.1| - 3.7e-05 23.8 0.0 0.12 12.4 0.0 2.5 2 0 0 2 2 2 2 Dynamin family MeaB PF03308.16 gi|55378196|ref|YP_136046.1| - 0.0047 15.9 0.1 0.092 11.7 0.0 2.3 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AIG1 PF04548.16 gi|55378196|ref|YP_136046.1| - 0.013 14.9 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_28 PF13521.6 gi|55378196|ref|YP_136046.1| - 0.016 15.5 0.3 0.065 13.5 0.0 2.2 2 1 1 3 3 3 0 AAA domain Arf PF00025.21 gi|55378196|ref|YP_136046.1| - 0.017 14.6 0.1 0.73 9.3 0.0 2.4 2 1 0 2 2 2 0 ADP-ribosylation factor family ABC_tran PF00005.27 gi|55378196|ref|YP_136046.1| - 0.028 14.9 0.0 0.079 13.5 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_18 PF13238.6 gi|55378196|ref|YP_136046.1| - 0.036 14.6 0.1 0.41 11.2 0.1 2.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55378196|ref|YP_136046.1| - 0.038 14.4 0.0 0.097 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|55378196|ref|YP_136046.1| - 0.065 12.8 0.8 1.9 8.0 0.1 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 gi|55378196|ref|YP_136046.1| - 0.068 12.6 0.0 0.19 11.1 0.0 1.7 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Nairo_nucleo PF02477.15 gi|55378196|ref|YP_136046.1| - 0.15 10.8 0.0 0.21 10.3 0.0 1.1 1 0 0 1 1 1 0 Nucleocapsid N protein ATP_bind_1 PF03029.17 gi|55378196|ref|YP_136046.1| - 0.17 11.6 0.1 25 4.5 0.0 2.5 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2813 PF11398.8 gi|55378196|ref|YP_136046.1| - 0.19 11.0 0.0 0.36 10.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) ABC_tran_CTD PF16326.5 gi|55378196|ref|YP_136046.1| - 1 9.7 9.4 0.23 11.8 3.5 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain Ribosomal_L11 PF00298.19 gi|55378198|ref|YP_136048.1| - 6.6e-20 71.4 0.0 1.1e-19 70.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|55378198|ref|YP_136048.1| - 2.9e-18 65.5 0.1 4.6e-18 64.8 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.21 gi|55378199|ref|YP_136049.1| - 3.9e-40 137.8 0.0 4.7e-40 137.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|55378200|ref|YP_136050.1| - 2.7e-21 75.6 0.0 5.6e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|55378200|ref|YP_136050.1| - 9.1e-15 54.4 0.0 1.5e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P BUD22 PF09073.10 gi|55378200|ref|YP_136050.1| - 0.63 9.3 7.4 0.84 8.9 7.4 1.1 1 0 0 1 1 1 0 BUD22 Cwf_Cwc_15 PF04889.12 gi|55378200|ref|YP_136050.1| - 1.2 8.8 14.0 2 8.1 14.0 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein RNA_pol_3_Rpc31 PF11705.8 gi|55378200|ref|YP_136050.1| - 1.9 8.7 14.0 3.7 7.8 14.0 1.5 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 DUF2457 PF10446.9 gi|55378200|ref|YP_136050.1| - 5.8 6.0 21.4 8.3 5.4 21.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) PPP4R2 PF09184.11 gi|55378200|ref|YP_136050.1| - 6.9 6.2 10.5 11 5.6 10.5 1.2 1 0 0 1 1 1 0 PPP4R2 Ribosomal_60s PF00428.19 gi|55378201|ref|YP_136051.1| - 1.3e-16 61.0 18.2 1.7e-16 60.5 18.2 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|55378201|ref|YP_136051.1| - 0.043 12.4 7.4 0.049 12.2 7.4 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Sigma70_ner PF04546.13 gi|55378201|ref|YP_136051.1| - 1.2 9.0 12.5 1.6 8.6 12.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region NOA36 PF06524.12 gi|55378201|ref|YP_136051.1| - 7 5.9 15.3 7.6 5.8 15.3 1.2 1 0 0 1 1 1 0 NOA36 protein CARDB PF07705.11 gi|55378202|ref|YP_136052.1| - 2.6e-12 46.9 47.3 0.0042 17.3 1.1 8.6 7 1 2 9 9 9 6 CARDB MG1 PF17790.1 gi|55378202|ref|YP_136052.1| - 0.012 16.0 0.0 12 6.4 0.0 3.9 3 0 0 3 3 3 0 Macroglobulin domain MG1 N_BRCA1_IG PF16158.5 gi|55378202|ref|YP_136052.1| - 0.022 15.5 8.0 0.21 12.3 0.2 5.0 7 0 0 7 7 7 0 Ig-like domain from next to BRCA1 gene bMG6 PF17962.1 gi|55378202|ref|YP_136052.1| - 0.12 12.5 1.3 3.9 7.7 0.3 3.7 3 0 0 3 3 3 0 Bacterial macroglobulin domain 6 DUF2163 PF09931.9 gi|55378202|ref|YP_136052.1| - 7.1 6.8 6.6 1.4 9.1 0.1 3.2 5 0 0 5 5 5 0 Uncharacterized conserved protein (DUF2163) Bactofilin PF04519.13 gi|55378207|ref|YP_136057.1| - 0.00077 19.7 7.5 0.00077 19.7 7.5 3.5 2 1 0 3 3 3 1 Polymer-forming cytoskeletal Ribosomal_S13_N PF08069.12 gi|55378209|ref|YP_136059.1| - 3e-22 78.4 0.1 5e-22 77.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|55378209|ref|YP_136059.1| - 4e-14 52.6 0.0 6.2e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 STAT2_C PF12188.8 gi|55378209|ref|YP_136059.1| - 0.059 13.3 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Signal transducer and activator of transcription 2 C terminal DUF4298 PF14131.6 gi|55378209|ref|YP_136059.1| - 0.12 12.3 0.3 0.23 11.4 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) PhageP22-tail PF09251.10 gi|55378211|ref|YP_136061.1| - 0.068 11.5 0.0 0.068 11.5 0.0 1.0 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike Ribosomal_S3Ae PF01015.18 gi|55378212|ref|YP_136062.1| - 5.6e-60 202.4 1.0 6.3e-60 202.2 1.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family RexA PF15969.5 gi|55378212|ref|YP_136062.1| - 0.034 13.7 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Intracellular sensor of Lambda phage, Abi component Copper-bind PF00127.20 gi|55378213|ref|YP_136063.1| - 1.3e-15 57.6 0.1 2.4e-15 56.8 0.1 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|55378213|ref|YP_136063.1| - 0.00036 20.3 3.7 0.00078 19.2 3.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|55378213|ref|YP_136063.1| - 0.00066 19.7 0.0 0.16 12.1 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.20 gi|55378213|ref|YP_136063.1| - 0.71 9.8 6.5 2.5 8.0 5.0 2.1 1 1 1 2 2 2 0 PKD domain ATP-grasp PF02222.22 gi|55378214|ref|YP_136064.1| - 1.5e-56 190.7 0.0 2e-56 190.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|55378214|ref|YP_136064.1| - 7.3e-16 57.6 0.0 1.3e-15 56.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|55378214|ref|YP_136064.1| - 2.5e-08 33.7 0.0 1.3e-07 31.4 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 gi|55378214|ref|YP_136064.1| - 0.0001 21.7 0.0 0.00018 21.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|55378214|ref|YP_136064.1| - 0.00026 20.6 0.0 0.00045 19.8 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|55378214|ref|YP_136064.1| - 0.00044 20.3 0.0 0.00068 19.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|55378214|ref|YP_136064.1| - 0.0046 16.4 0.0 0.0075 15.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|55378214|ref|YP_136064.1| - 0.074 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain 3HCDH_N PF02737.18 gi|55378214|ref|YP_136064.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PMT_2 PF13231.6 gi|55378215|ref|YP_136065.1| - 7.2e-10 39.3 8.6 7.2e-10 39.3 8.6 2.7 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|55378215|ref|YP_136065.1| - 2e-05 24.3 6.8 2e-05 24.3 6.8 1.7 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DMRL_synthase PF00885.19 gi|55378216|ref|YP_136066.1| - 7.2e-31 106.9 0.2 7.9e-31 106.8 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|55378217|ref|YP_136067.1| - 3.2e-67 227.3 0.0 3.6e-67 227.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|55378217|ref|YP_136067.1| - 0.0013 17.3 0.0 0.0023 16.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|55378217|ref|YP_136067.1| - 0.0025 17.2 0.0 0.0046 16.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Rsbr_N PF08678.10 gi|55378217|ref|YP_136067.1| - 0.12 12.4 0.0 0.26 11.4 0.0 1.6 1 1 0 1 1 1 0 Rsbr N terminal ATP-synt_C PF00137.21 gi|55378218|ref|YP_136068.1| - 9.8e-13 48.2 7.6 9.8e-13 48.2 7.6 1.8 2 0 0 2 2 2 1 ATP synthase subunit C NPCBM_assoc PF10633.9 gi|55378219|ref|YP_136069.1| - 0.064 13.5 4.9 0.3 11.4 0.2 3.1 3 1 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Cupin_2 PF07883.11 gi|55378220|ref|YP_136070.1| - 3.5e-13 49.1 0.9 6.9e-13 48.1 0.9 1.5 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|55378220|ref|YP_136070.1| - 0.0028 17.6 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|55378220|ref|YP_136070.1| - 0.096 12.3 0.0 0.15 11.6 0.0 1.4 1 1 0 1 1 1 0 Cupin CTP_transf_like PF01467.26 gi|55378221|ref|YP_136071.1| - 1.4e-05 25.3 0.0 1.5e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like Prok-JAB PF14464.6 gi|55378222|ref|YP_136072.1| - 1e-08 35.0 0.0 1.4e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|55378222|ref|YP_136072.1| - 0.04 13.9 0.0 0.061 13.3 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain tRNA_anti-codon PF01336.25 gi|55378223|ref|YP_136073.1| - 2.4e-12 46.6 0.9 5.1e-12 45.6 0.2 2.0 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|55378223|ref|YP_136073.1| - 0.009 16.2 0.2 0.009 16.2 0.2 2.0 2 0 0 2 2 2 1 DHH family S1 PF00575.23 gi|55378223|ref|YP_136073.1| - 0.0099 16.2 1.1 0.023 15.0 0.1 2.2 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|55378223|ref|YP_136073.1| - 0.12 12.6 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PLDc_2 PF13091.6 gi|55378224|ref|YP_136074.1| - 7.5e-40 135.9 0.0 3.9e-22 78.6 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|55378224|ref|YP_136074.1| - 5e-06 26.5 0.2 8.7e-05 22.5 0.0 2.4 2 0 0 2 2 2 1 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|55378224|ref|YP_136074.1| - 0.057 13.0 0.0 11 5.5 0.0 2.5 2 1 0 2 2 2 0 Polyphosphate kinase C-terminal domain 1 Regulator_TrmB PF11495.8 gi|55378224|ref|YP_136074.1| - 0.07 12.3 0.0 9.4 5.3 0.0 2.4 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB HEAT_2 PF13646.6 gi|55378226|ref|YP_136075.1| - 1.7e-19 69.9 6.5 2.2e-10 40.8 5.3 2.9 1 1 1 2 2 2 2 HEAT repeats HEAT_PBS PF03130.16 gi|55378226|ref|YP_136075.1| - 6.6e-12 44.9 13.3 0.00055 20.4 0.1 6.0 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|55378226|ref|YP_136075.1| - 1.2e-06 28.3 0.2 0.22 11.9 0.1 3.6 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.23 gi|55378226|ref|YP_136075.1| - 1.4e-05 25.0 0.2 0.06 13.4 0.0 3.4 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|55378226|ref|YP_136075.1| - 0.0016 18.9 2.0 0.12 12.9 0.1 3.0 2 1 0 2 2 2 1 HEAT-like repeat Vitellogenin_N PF01347.22 gi|55378226|ref|YP_136075.1| - 0.076 11.4 0.0 0.15 10.4 0.0 1.5 1 1 0 1 1 1 0 Lipoprotein amino terminal region Adaptin_binding PF10199.9 gi|55378226|ref|YP_136075.1| - 0.57 10.8 7.4 2.1 9.0 7.4 2.0 1 0 0 1 1 1 0 Alpha and gamma adaptin binding protein p34 Xan_ur_permease PF00860.20 gi|55378225|ref|YP_136076.1| - 5e-80 269.1 34.6 5e-80 269.1 34.6 1.7 2 0 0 2 2 2 1 Permease family Gram_pos_anchor PF00746.21 gi|55378227|ref|YP_136077.1| - 9.8 6.2 6.3 3 7.9 2.2 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif AIRC PF00731.20 gi|55378228|ref|YP_136078.1| - 8.4e-49 165.0 0.0 1.1e-48 164.5 0.0 1.2 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.19 gi|55378229|ref|YP_136079.1| - 1.1e-30 105.6 0.3 1.6e-30 105.2 0.3 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4244 PF14029.6 gi|55378229|ref|YP_136079.1| - 0.012 15.0 0.1 0.15 11.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) Oxidored_q6 PF01058.22 gi|55378230|ref|YP_136080.1| - 7.2e-22 77.6 0.2 1e-21 77.1 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|55378231|ref|YP_136081.1| - 1.8e-83 279.8 0.0 3.5e-82 275.5 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|55378231|ref|YP_136081.1| - 3.6e-35 121.2 0.2 7.1e-35 120.3 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|55378232|ref|YP_136082.1| - 3e-97 325.5 12.6 3.7e-97 325.2 12.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|55378233|ref|YP_136083.1| - 4.6e-13 48.4 8.7 8.5e-07 28.5 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|55378233|ref|YP_136083.1| - 2.8e-12 47.0 10.7 4.5e-12 46.4 10.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|55378233|ref|YP_136083.1| - 1.6e-11 45.0 4.4 2.4e-06 28.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|55378233|ref|YP_136083.1| - 2.4e-09 37.2 23.2 1.5e-07 31.5 12.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|55378233|ref|YP_136083.1| - 6.5e-09 35.8 8.1 9.7e-09 35.2 8.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|55378233|ref|YP_136083.1| - 4.8e-08 33.0 19.3 3.1e-06 27.2 11.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|55378233|ref|YP_136083.1| - 2.3e-06 27.4 12.6 0.0036 17.3 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|55378233|ref|YP_136083.1| - 8e-06 26.2 9.7 0.0022 18.4 12.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55378233|ref|YP_136083.1| - 1.6e-05 25.4 13.2 0.0043 17.5 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55378233|ref|YP_136083.1| - 3.6e-05 23.6 11.8 0.0044 17.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|55378233|ref|YP_136083.1| - 0.00018 22.2 14.1 0.0041 18.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|55378233|ref|YP_136083.1| - 0.0002 21.6 14.1 0.0038 17.6 4.1 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|55378233|ref|YP_136083.1| - 0.001 19.3 9.2 0.051 13.8 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|55378233|ref|YP_136083.1| - 0.0027 18.5 5.7 0.52 11.2 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|55378233|ref|YP_136083.1| - 0.049 13.8 8.3 0.16 12.1 8.3 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S TNFR_c6 PF00020.18 gi|55378233|ref|YP_136083.1| - 0.25 11.8 8.0 2.8 8.4 1.4 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_13 PF13370.6 gi|55378233|ref|YP_136083.1| - 1.5 9.4 16.8 1.4 9.6 2.9 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q3 PF00499.20 gi|55378234|ref|YP_136084.1| - 3.7e-17 62.4 7.6 3.7e-17 62.4 7.6 1.3 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|55378234|ref|YP_136084.1| - 0.12 12.6 14.7 0.086 13.0 13.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|55378235|ref|YP_136085.1| - 0.00013 21.7 2.1 0.00015 21.5 2.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 G3P_acyltransf PF02660.15 gi|55378235|ref|YP_136085.1| - 0.36 10.9 5.5 0.45 10.6 5.5 1.1 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase Oxidored_q2 PF00420.24 gi|55378236|ref|YP_136086.1| - 6e-13 48.3 2.5 6.2e-13 48.3 2.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|55378237|ref|YP_136087.1| - 6.4e-77 258.6 19.7 4.4e-76 255.9 19.7 2.3 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|55378237|ref|YP_136087.1| - 5e-20 71.3 0.9 1.4e-18 66.7 0.0 3.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|55378237|ref|YP_136087.1| - 0.17 11.5 0.0 1.2 8.7 0.0 2.1 1 1 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|55378238|ref|YP_136088.1| - 1.3e-74 251.0 27.3 1.3e-74 251.0 27.3 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|55378238|ref|YP_136088.1| - 0.00012 22.1 0.2 0.00012 22.1 0.2 3.4 4 0 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|55378239|ref|YP_136089.1| - 1.1e-63 215.2 22.7 1.1e-63 215.2 22.7 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|55378239|ref|YP_136089.1| - 0.00049 20.1 1.7 0.00049 20.1 1.7 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lactamase_B PF00753.27 gi|55378240|ref|YP_136090.1| - 1.9e-12 47.6 0.3 6.2e-12 45.9 0.3 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55378240|ref|YP_136090.1| - 2.3e-06 27.3 0.3 1.4e-05 24.8 0.3 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TAD2 PF18521.1 gi|55378240|ref|YP_136090.1| - 0.11 12.5 0.0 0.42 10.7 0.0 2.0 1 0 0 1 1 1 0 Transactivation domain 2 DUF883 PF05957.13 gi|55378241|ref|YP_136091.1| - 0.13 12.9 2.7 0.59 10.8 0.7 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) TMPIT PF07851.13 gi|55378241|ref|YP_136091.1| - 0.27 10.5 0.3 0.28 10.4 0.3 1.0 1 0 0 1 1 1 0 TMPIT-like protein Phage_tail_T PF06223.12 gi|55378242|ref|YP_136092.1| - 0.034 14.7 0.2 0.083 13.4 0.2 1.6 1 0 0 1 1 1 0 Minor tail protein T DUF2533 PF10752.9 gi|55378243|ref|YP_136093.1| - 0.08 13.4 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2533) Phage_integrase PF00589.22 gi|55378249|ref|YP_136099.1| - 1.3e-07 31.5 0.1 4.8e-07 29.7 0.1 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55378249|ref|YP_136099.1| - 2.3e-07 31.0 0.1 6.1e-07 29.7 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|55378249|ref|YP_136099.1| - 1.6e-06 28.5 0.1 3.3e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|55378249|ref|YP_136099.1| - 1.3e-05 25.4 0.0 5.2e-05 23.5 0.1 1.9 2 0 0 2 2 2 1 Phage integrase SAM-like domain Pirin PF02678.16 gi|55378250|ref|YP_136100.1| - 9.8e-22 77.0 0.0 1.9e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|55378250|ref|YP_136100.1| - 2.2e-12 47.2 0.0 2e-11 44.1 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Pirin_C_2 PF17954.1 gi|55378250|ref|YP_136100.1| - 0.029 14.5 0.0 0.083 13.1 0.0 1.7 2 0 0 2 2 2 0 Quercetinase C-terminal cupin domain Pyr_redox_2 PF07992.14 gi|55378251|ref|YP_136101.1| - 5.4e-19 68.5 6.9 5e-11 42.4 0.3 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55378251|ref|YP_136101.1| - 8.8e-11 41.6 2.0 2.8e-06 26.8 0.1 2.9 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|55378251|ref|YP_136101.1| - 3.2e-10 39.3 0.1 0.00013 20.8 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|55378251|ref|YP_136101.1| - 8.5e-09 35.4 3.0 0.00024 20.8 0.0 2.5 1 1 2 3 3 3 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|55378251|ref|YP_136101.1| - 1.4e-07 31.7 0.3 0.00028 20.9 0.0 2.6 3 0 0 3 3 3 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|55378251|ref|YP_136101.1| - 6e-07 28.9 0.2 0.00028 20.1 0.0 2.2 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|55378251|ref|YP_136101.1| - 4.5e-06 26.2 6.0 0.0045 16.3 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|55378251|ref|YP_136101.1| - 8.2e-06 25.2 0.1 2.6e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|55378251|ref|YP_136101.1| - 1.9e-05 23.9 1.0 0.00045 19.4 0.2 2.2 1 1 1 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|55378251|ref|YP_136101.1| - 4.2e-05 22.8 0.1 0.0063 15.6 0.0 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|55378251|ref|YP_136101.1| - 0.00024 20.5 0.4 0.00033 20.0 0.0 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|55378251|ref|YP_136101.1| - 0.00029 20.3 0.8 0.00036 20.0 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|55378251|ref|YP_136101.1| - 0.00077 19.6 0.0 0.002 18.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|55378251|ref|YP_136101.1| - 0.0012 17.8 1.5 0.23 10.2 0.3 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|55378251|ref|YP_136101.1| - 0.021 15.4 0.3 0.49 11.0 0.3 2.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|55378251|ref|YP_136101.1| - 0.034 13.4 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase XdhC_C PF13478.6 gi|55378251|ref|YP_136101.1| - 0.046 14.2 0.1 0.12 12.9 0.1 1.7 1 1 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|55378251|ref|YP_136101.1| - 0.055 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DoxX PF07681.12 gi|55378252|ref|YP_136102.1| - 5.4e-11 42.9 10.7 5.4e-11 42.9 10.7 1.6 2 0 0 2 2 2 1 DoxX SURF4 PF02077.15 gi|55378252|ref|YP_136102.1| - 0.00013 21.7 0.6 0.0004 20.1 0.6 1.8 1 1 0 1 1 1 1 SURF4 family HR_lesion PF05514.11 gi|55378252|ref|YP_136102.1| - 0.00035 20.8 0.3 0.012 15.8 0.1 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing Histone_H2A_C PF16211.5 gi|55378252|ref|YP_136102.1| - 0.0047 16.6 0.7 0.013 15.3 0.0 2.1 2 0 0 2 2 2 1 C-terminus of histone H2A DoxX_2 PF13564.6 gi|55378252|ref|YP_136102.1| - 0.016 15.3 13.7 0.013 15.5 11.7 1.8 1 1 1 2 2 2 0 DoxX-like family DUF2613 PF11021.8 gi|55378252|ref|YP_136102.1| - 0.041 14.0 0.2 0.041 14.0 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2613) TetR_N PF00440.23 gi|55378253|ref|YP_136103.1| - 1e-09 38.0 0.0 1.8e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|55378253|ref|YP_136103.1| - 1.9e-08 34.5 0.1 3.3e-08 33.7 0.1 1.4 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 gi|55378253|ref|YP_136103.1| - 2.4e-06 27.6 0.2 7.7e-06 25.9 0.1 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|55378253|ref|YP_136103.1| - 5.2e-05 23.3 0.1 0.00011 22.3 0.0 1.5 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|55378253|ref|YP_136103.1| - 0.00019 21.6 0.1 0.00051 20.3 0.0 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|55378253|ref|YP_136103.1| - 0.00062 20.1 0.1 0.0012 19.1 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|55378253|ref|YP_136103.1| - 0.099 13.3 0.0 0.18 12.4 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain AAA_assoc_C PF09821.9 gi|55378256|ref|YP_136106.1| - 0.17 12.4 0.1 0.32 11.6 0.1 1.4 1 0 0 1 1 1 0 C-terminal AAA-associated domain MrpF_PhaF PF04066.13 gi|55378257|ref|YP_136107.1| - 0.068 13.6 1.0 3.4 8.1 0.1 2.3 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) SQS_PSY PF00494.19 gi|55378258|ref|YP_136108.1| - 3.1e-51 174.4 0.1 3.8e-51 174.1 0.1 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase PMC2NT PF08066.12 gi|55378258|ref|YP_136108.1| - 0.1 13.3 0.8 0.31 11.8 0.8 1.9 1 0 0 1 1 1 0 PMC2NT (NUC016) domain PLRV_ORF5 PF01690.17 gi|55378258|ref|YP_136108.1| - 0.11 11.2 0.0 0.92 8.2 0.0 2.0 2 0 0 2 2 2 0 Potato leaf roll virus readthrough protein Glyco_hydro_68 PF02435.16 gi|55378259|ref|YP_136109.1| - 5.9e-75 252.7 0.0 1.8e-73 247.8 0.0 2.3 1 1 0 1 1 1 1 Levansucrase/Invertase Glyco_hydro_43 PF04616.14 gi|55378259|ref|YP_136109.1| - 9.9e-09 34.9 0.0 3.2e-08 33.3 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 BNR_2 PF13088.6 gi|55378259|ref|YP_136109.1| - 0.11 11.7 0.0 1.2 8.4 0.0 2.2 2 1 1 3 3 3 0 BNR repeat-like domain Glyco_hydro_32N PF00251.20 gi|55378260|ref|YP_136110.1| - 4.8e-77 259.5 0.0 6e-77 259.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|55378260|ref|YP_136110.1| - 2.1e-31 109.1 0.1 2.9e-31 108.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF4960 PF16324.5 gi|55378260|ref|YP_136110.1| - 5.3e-06 26.2 0.0 2.7e-05 23.8 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4960) DUF4975 PF16346.5 gi|55378260|ref|YP_136110.1| - 0.05 13.7 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4975) T2SSK PF03934.13 gi|55378260|ref|YP_136110.1| - 0.08 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K MreB_Mbl PF06723.13 gi|55378262|ref|YP_136112.1| - 5.8e-06 25.3 0.1 1.3e-05 24.2 0.1 1.7 1 1 0 1 1 1 1 MreB/Mbl protein DNA_gyraseB PF00204.25 gi|55378262|ref|YP_136112.1| - 0.0061 16.1 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B Arch_fla_DE PF04659.13 gi|55378263|ref|YP_136113.1| - 1.1e-29 102.1 0.3 1.6e-29 101.6 0.3 1.2 1 0 0 1 1 1 1 Archaeal flagella protein AAA_31 PF13614.6 gi|55378264|ref|YP_136114.1| - 1.3e-37 129.5 0.0 9.9e-37 126.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55378264|ref|YP_136114.1| - 3.1e-18 66.0 0.0 4.1e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|55378264|ref|YP_136114.1| - 2.5e-10 40.1 0.7 2.8e-06 26.8 0.1 2.4 2 1 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|55378264|ref|YP_136114.1| - 2.4e-09 37.0 0.9 6.1e-06 25.9 0.1 2.5 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|55378264|ref|YP_136114.1| - 9.1e-08 31.9 0.2 0.0066 16.0 0.1 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|55378264|ref|YP_136114.1| - 1.9e-07 30.8 0.0 0.0013 18.3 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|55378264|ref|YP_136114.1| - 2.1e-06 27.1 0.5 0.00051 19.3 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase ATP_bind_1 PF03029.17 gi|55378264|ref|YP_136114.1| - 0.0024 17.7 0.6 0.85 9.3 0.0 2.5 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|55378264|ref|YP_136114.1| - 0.032 13.9 0.0 0.059 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|55378264|ref|YP_136114.1| - 0.056 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|55378264|ref|YP_136114.1| - 0.065 12.8 0.9 0.13 11.8 0.0 2.0 3 0 0 3 3 3 0 AAA domain LpxK PF02606.14 gi|55378264|ref|YP_136114.1| - 0.11 11.6 0.1 0.19 10.8 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_24 PF13479.6 gi|55378264|ref|YP_136114.1| - 0.11 12.2 0.4 0.33 10.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|55378264|ref|YP_136114.1| - 0.15 11.3 4.1 3.1 7.0 4.2 2.5 1 1 0 1 1 1 0 VirC1 protein DUF4535 PF15054.6 gi|55378264|ref|YP_136114.1| - 0.22 11.3 0.0 0.4 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) CheW PF01584.19 gi|55378265|ref|YP_136115.1| - 2.3e-21 75.9 0.3 3.5e-21 75.3 0.3 1.3 1 0 0 1 1 1 1 CheW-like domain Pyr_redox_2 PF07992.14 gi|55378266|ref|YP_136116.1| - 6e-30 104.5 2.9 6e-30 104.5 2.9 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55378266|ref|YP_136116.1| - 1.5e-11 44.7 6.4 1.5e-08 35.1 0.3 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|55378266|ref|YP_136116.1| - 1.4e-05 24.9 4.3 0.27 10.8 0.0 3.5 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|55378266|ref|YP_136116.1| - 7e-05 22.9 2.1 1.1 9.2 0.0 3.8 2 2 2 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|55378266|ref|YP_136116.1| - 0.0011 19.2 6.0 0.18 12.1 0.0 3.0 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|55378266|ref|YP_136116.1| - 0.0013 18.0 0.1 1.1 8.4 0.0 2.3 2 0 0 2 2 2 2 Thi4 family TrkA_N PF02254.18 gi|55378266|ref|YP_136116.1| - 0.0021 18.3 1.4 0.57 10.4 0.0 2.4 2 0 0 2 2 2 2 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|55378266|ref|YP_136116.1| - 0.02 14.5 0.4 0.29 10.7 0.0 2.5 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|55378266|ref|YP_136116.1| - 0.033 13.3 7.0 0.91 8.5 0.1 3.2 3 1 1 4 4 4 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|55378266|ref|YP_136116.1| - 0.045 12.9 0.0 0.46 9.6 0.0 2.0 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DapB_N PF01113.20 gi|55378266|ref|YP_136116.1| - 0.05 13.7 0.0 0.34 11.0 0.0 2.2 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|55378266|ref|YP_136116.1| - 0.068 13.4 0.4 1.2 9.4 0.0 2.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|55378266|ref|YP_136116.1| - 0.11 13.0 1.5 1 9.8 0.0 2.8 2 2 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain HofP PF10748.9 gi|55378266|ref|YP_136116.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 DNA utilization proteins HofP PAS PF00989.25 gi|55378267|ref|YP_136117.1| - 6.5e-17 61.6 0.2 2.4e-16 59.7 0.0 2.1 3 0 0 3 3 3 1 PAS fold PAS_4 PF08448.10 gi|55378267|ref|YP_136117.1| - 5.1e-11 42.8 0.4 1.3e-10 41.5 0.1 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|55378267|ref|YP_136117.1| - 5.8e-11 42.9 0.0 1.4e-10 41.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|55378267|ref|YP_136117.1| - 3.6e-09 36.8 0.0 9.2e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|55378267|ref|YP_136117.1| - 2.1e-07 30.8 0.0 9.9e-07 28.6 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|55378267|ref|YP_136117.1| - 4.3e-06 26.7 0.0 9.6e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|55378267|ref|YP_136117.1| - 0.00031 20.3 0.1 0.00066 19.3 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|55378267|ref|YP_136117.1| - 0.00084 19.0 0.8 0.0018 18.0 0.8 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|55378267|ref|YP_136117.1| - 0.00099 19.3 0.0 0.0039 17.3 0.0 2.2 1 1 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|55378267|ref|YP_136117.1| - 0.0033 17.4 1.6 0.0033 17.4 1.6 2.7 3 1 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|55378267|ref|YP_136117.1| - 0.017 15.7 0.0 0.056 14.0 0.0 2.0 1 1 0 1 1 1 0 PAS domain Ter PF05472.11 gi|55378267|ref|YP_136117.1| - 0.12 11.4 0.0 0.26 10.3 0.0 1.5 2 0 0 2 2 2 0 DNA replication terminus site-binding protein (Ter protein) Misat_Tub_SegII PF10644.9 gi|55378267|ref|YP_136117.1| - 0.15 12.3 0.0 0.32 11.3 0.0 1.5 1 0 0 1 1 1 0 Misato Segment II tubulin-like domain MLTR_LBD PF17765.1 gi|55378267|ref|YP_136117.1| - 0.29 11.2 5.7 0.91 9.6 0.0 3.1 2 1 1 3 3 3 0 MmyB-like transcription regulator ligand binding domain MDD_C PF18376.1 gi|55378268|ref|YP_136118.1| - 1e-05 25.4 0.0 1.5e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|55378268|ref|YP_136118.1| - 9.3e-05 22.6 4.0 0.00094 19.4 4.2 2.3 1 1 1 2 2 2 1 GHMP kinases N terminal domain Methyltransf_24 PF13578.6 gi|55378268|ref|YP_136118.1| - 0.05 14.6 2.1 2.1 9.4 0.0 2.8 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_34 PF11312.8 gi|55378268|ref|YP_136118.1| - 0.19 11.0 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Cob_adeno_trans PF01923.18 gi|55378269|ref|YP_136119.1| - 8.6e-56 188.6 0.0 9.7e-56 188.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PMSR PF01625.21 gi|55378270|ref|YP_136120.1| - 1.8e-37 128.9 0.0 2.7e-37 128.3 0.0 1.2 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase zf-H2C2_2 PF13465.6 gi|55378271|ref|YP_136121.1| - 0.0027 18.1 5.2 0.013 15.9 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zf-LITAF-like PF10601.9 gi|55378271|ref|YP_136121.1| - 0.006 16.8 0.8 0.45 10.8 0.1 2.1 2 0 0 2 2 2 1 LITAF-like zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|55378271|ref|YP_136121.1| - 0.013 15.5 3.2 0.11 12.5 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1610 PF07754.11 gi|55378271|ref|YP_136121.1| - 0.022 14.7 2.0 2.3 8.3 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|55378271|ref|YP_136121.1| - 0.035 13.8 3.4 0.5 10.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_9 PF14369.6 gi|55378271|ref|YP_136121.1| - 0.038 14.2 5.2 0.082 13.2 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon DUF3797 PF12677.7 gi|55378271|ref|YP_136121.1| - 0.071 13.0 0.3 5.8 6.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) zinc-ribbons_6 PF07191.12 gi|55378271|ref|YP_136121.1| - 0.083 12.9 2.1 1.1 9.3 2.0 2.0 1 1 1 2 2 2 0 zinc-ribbons UPF0547 PF10571.9 gi|55378271|ref|YP_136121.1| - 0.28 11.3 6.5 3.6 7.7 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.20 gi|55378271|ref|YP_136121.1| - 0.75 9.9 7.4 1 9.5 1.5 2.2 1 1 1 2 2 2 0 Rubredoxin zf_C2H2_10 PF18414.1 gi|55378271|ref|YP_136121.1| - 1.4 8.5 5.7 8.4 6.0 0.8 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Response_reg PF00072.24 gi|55378273|ref|YP_136123.1| - 1.2e-19 70.5 0.1 1.4e-19 70.3 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 gi|55378273|ref|YP_136123.1| - 0.014 15.4 0.1 0.04 14.0 0.1 1.7 1 1 1 2 2 2 0 B12 binding domain OKR_DC_1_N PF03709.15 gi|55378273|ref|YP_136123.1| - 0.069 13.4 0.1 0.1 12.9 0.0 1.3 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Nif11 PF07862.11 gi|55378273|ref|YP_136123.1| - 0.14 12.5 0.8 15 6.0 0.1 3.0 2 1 1 3 3 3 0 Nif11 domain PAS PF00989.25 gi|55378274|ref|YP_136124.1| - 4.7e-44 149.0 3.7 8.2e-11 41.9 0.0 6.4 6 0 0 6 6 6 5 PAS fold PAS_9 PF13426.7 gi|55378274|ref|YP_136124.1| - 9.9e-42 141.4 0.5 2e-10 40.9 0.1 5.5 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.10 gi|55378274|ref|YP_136124.1| - 3.5e-37 127.0 20.2 4.3e-07 30.2 0.0 6.5 7 0 0 7 7 6 5 PAS fold PAS_3 PF08447.12 gi|55378274|ref|YP_136124.1| - 3.6e-29 100.9 0.1 1.7e-13 50.7 0.0 5.7 5 0 0 5 5 5 4 PAS fold PAS_8 PF13188.7 gi|55378274|ref|YP_136124.1| - 3.5e-26 90.7 5.1 5.8e-07 29.4 0.1 5.0 5 0 0 5 5 4 4 PAS domain GAF_2 PF13185.6 gi|55378274|ref|YP_136124.1| - 5.3e-17 62.4 1.1 5.2e-11 43.0 0.2 3.0 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|55378274|ref|YP_136124.1| - 4.2e-16 59.4 0.1 1.2e-15 57.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|55378274|ref|YP_136124.1| - 1.1e-09 39.1 0.1 0.00024 21.8 0.0 3.5 4 0 0 4 4 3 2 GAF domain GAF_3 PF13492.6 gi|55378274|ref|YP_136124.1| - 7e-09 36.1 0.0 0.0011 19.3 0.0 2.6 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.24 gi|55378274|ref|YP_136124.1| - 1.6e-08 34.7 0.0 4e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|55378274|ref|YP_136124.1| - 5.9e-06 26.2 4.2 4.4e-05 23.4 4.2 2.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|55378274|ref|YP_136124.1| - 7.1e-06 26.0 0.1 2.1e-05 24.4 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|55378274|ref|YP_136124.1| - 0.00016 21.8 8.8 2.6 8.3 0.0 6.4 6 1 0 6 6 6 1 PAS fold PAS_12 PF18095.1 gi|55378274|ref|YP_136124.1| - 0.00096 18.8 0.0 3.8 7.1 0.1 3.4 3 0 0 3 3 3 1 UPF0242 C-terminal PAS-like domain HATPase_c_3 PF13589.6 gi|55378274|ref|YP_136124.1| - 0.0027 17.5 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|55378274|ref|YP_136124.1| - 0.064 12.8 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase HisKA_2 PF07568.12 gi|55378274|ref|YP_136124.1| - 0.16 12.1 0.5 0.5 10.5 0.5 1.8 1 0 0 1 1 1 0 Histidine kinase Aminotran_5 PF00266.19 gi|55378275|ref|YP_136125.1| - 3.2e-08 32.9 0.0 4.7e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|55378275|ref|YP_136125.1| - 5.7e-05 22.1 0.0 0.0024 16.8 0.0 2.0 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|55378275|ref|YP_136125.1| - 0.0075 15.6 0.1 0.012 14.9 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Peptidase_S8 PF00082.22 gi|55378275|ref|YP_136125.1| - 0.02 14.1 0.0 0.028 13.7 0.0 1.2 1 0 0 1 1 1 0 Subtilase family GDC-P PF02347.16 gi|55378276|ref|YP_136126.1| - 3.6e-105 352.3 0.0 4.1e-105 352.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|55378276|ref|YP_136126.1| - 1e-05 24.2 0.0 1.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GCV_H PF01597.19 gi|55378277|ref|YP_136127.1| - 1.7e-44 150.6 0.0 1.8e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|55378277|ref|YP_136127.1| - 0.0084 16.0 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|55378277|ref|YP_136127.1| - 0.028 14.3 0.7 0.05 13.4 0.1 1.8 3 0 0 3 3 3 0 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 gi|55378277|ref|YP_136127.1| - 0.1 12.4 0.2 0.33 10.7 0.2 1.8 1 1 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_T PF01571.21 gi|229269505|ref|YP_136128.2| - 1.8e-80 270.0 0.0 2.1e-80 269.8 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|229269505|ref|YP_136128.2| - 2e-21 75.7 0.1 3.9e-21 74.8 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|229269505|ref|YP_136128.2| - 0.00079 19.6 0.0 0.011 15.8 0.0 2.0 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family PAS_4 PF08448.10 gi|55378279|ref|YP_136129.1| - 6.6e-31 106.8 6.2 4e-14 52.8 0.1 3.5 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|55378279|ref|YP_136129.1| - 1.1e-23 83.4 0.1 1.5e-12 47.5 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|55378279|ref|YP_136129.1| - 2.8e-19 69.2 0.4 2.9e-08 33.9 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|55378279|ref|YP_136129.1| - 5.6e-17 61.9 0.0 1.8e-07 31.3 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_8 PF13188.7 gi|55378279|ref|YP_136129.1| - 2e-07 30.9 0.1 1.1e-06 28.5 0.0 2.4 2 0 0 2 2 2 1 PAS domain HATPase_c PF02518.26 gi|55378279|ref|YP_136129.1| - 3.4e-07 30.8 0.0 7.5e-07 29.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55378279|ref|YP_136129.1| - 0.0022 18.0 0.6 0.012 15.6 0.5 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|55378279|ref|YP_136129.1| - 0.011 15.9 0.5 0.56 10.4 0.0 3.2 3 1 0 3 3 3 0 PAS fold HisKA_4TM PF16926.5 gi|55378279|ref|YP_136129.1| - 0.07 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|55378279|ref|YP_136129.1| - 0.084 12.6 0.1 0.22 11.3 0.1 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain GHL13 PF14883.6 gi|55378279|ref|YP_136129.1| - 0.17 10.9 0.0 0.32 10.0 0.0 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 NYN PF01936.18 gi|55378280|ref|YP_136130.1| - 4.6e-19 69.3 0.1 5.2e-19 69.2 0.1 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.6 gi|55378280|ref|YP_136130.1| - 5.8e-05 22.8 0.8 7.3e-05 22.5 0.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain CoA_binding_2 PF13380.6 gi|55378280|ref|YP_136130.1| - 0.029 14.9 0.6 0.077 13.5 0.3 1.7 1 1 1 2 2 2 0 CoA binding domain DUF5615 PF18480.1 gi|55378280|ref|YP_136130.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5615) TatD_DNase PF01026.21 gi|55378282|ref|YP_136132.1| - 3.7e-09 36.3 0.1 2.2e-06 27.2 0.1 2.1 1 1 0 1 1 1 1 TatD related DNase ABC_tran PF00005.27 gi|55378283|ref|YP_136133.1| - 2.7e-30 105.6 0.0 4.7e-30 104.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378283|ref|YP_136133.1| - 1.6e-11 44.6 0.0 9.4e-05 22.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55378283|ref|YP_136133.1| - 7.6e-09 35.3 0.3 7.8e-08 32.0 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|55378283|ref|YP_136133.1| - 3.7e-05 23.6 0.0 0.0053 16.5 0.0 2.2 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|55378283|ref|YP_136133.1| - 0.00011 22.8 0.4 0.00056 20.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|55378283|ref|YP_136133.1| - 0.00039 20.4 0.0 0.00087 19.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|55378283|ref|YP_136133.1| - 0.0018 18.5 0.0 0.0056 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55378283|ref|YP_136133.1| - 0.0045 16.7 0.0 0.0099 15.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|55378283|ref|YP_136133.1| - 0.0074 15.9 0.4 0.08 12.5 0.4 2.3 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|55378283|ref|YP_136133.1| - 0.0086 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|55378283|ref|YP_136133.1| - 0.0096 16.1 0.0 0.014 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55378283|ref|YP_136133.1| - 0.017 14.9 0.4 0.42 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|55378283|ref|YP_136133.1| - 0.021 15.2 0.1 0.074 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain DeoRC PF00455.22 gi|55378283|ref|YP_136133.1| - 0.026 14.5 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain ABC_ATPase PF09818.9 gi|55378283|ref|YP_136133.1| - 0.04 12.7 0.1 6.6 5.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.21 gi|55378283|ref|YP_136133.1| - 0.042 13.2 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRK PF00485.18 gi|55378283|ref|YP_136133.1| - 0.055 13.2 0.0 0.22 11.3 0.0 1.9 1 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family KdpD PF02702.17 gi|55378283|ref|YP_136133.1| - 0.06 12.8 0.2 0.11 12.0 0.2 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_18 PF13238.6 gi|55378283|ref|YP_136133.1| - 0.14 12.7 0.0 0.33 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|55378283|ref|YP_136133.1| - 0.14 11.9 0.1 0.81 9.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|55378284|ref|YP_136134.1| - 3e-21 76.0 13.3 3e-21 76.0 13.3 5.0 1 1 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55378285|ref|YP_136135.1| - 1.7e-15 57.2 18.2 1.7e-15 57.2 18.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|55378286|ref|YP_136136.1| - 1.9e-29 103.3 0.3 4.9e-29 101.9 0.3 1.6 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|55378286|ref|YP_136136.1| - 6.8e-18 64.5 0.0 1.4e-17 63.5 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|55378286|ref|YP_136136.1| - 0.0015 18.5 0.1 0.47 10.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|55378286|ref|YP_136136.1| - 0.0018 18.1 0.0 0.021 14.6 0.0 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55378286|ref|YP_136136.1| - 0.0046 16.8 0.4 0.0075 16.1 0.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RecT PF03837.14 gi|55378286|ref|YP_136136.1| - 0.076 12.5 1.7 1.1 8.7 0.7 2.2 2 0 0 2 2 2 0 RecT family PhoU PF01895.19 gi|55378287|ref|YP_136137.1| - 2.8e-23 82.2 5.7 1.4e-18 67.1 0.7 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|55378287|ref|YP_136137.1| - 5.7e-09 35.7 0.0 1.2e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF948 PF06103.11 gi|55378287|ref|YP_136137.1| - 3.7e-05 23.9 3.3 1.7 9.0 0.1 3.5 2 2 1 3 3 3 3 Bacterial protein of unknown function (DUF948) Bep_C_terminal PF17841.1 gi|55378287|ref|YP_136137.1| - 0.0093 16.2 0.0 0.023 14.9 0.0 1.8 1 1 0 1 1 1 1 BID domain of Bartonella effector protein (Bep) FAM184 PF15665.5 gi|55378287|ref|YP_136137.1| - 0.12 12.1 0.2 0.22 11.3 0.2 1.4 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B FlgN PF05130.12 gi|55378287|ref|YP_136137.1| - 0.17 12.4 2.4 0.14 12.6 0.4 1.8 2 1 0 2 2 2 0 FlgN protein Alanine_zipper PF11839.8 gi|55378287|ref|YP_136137.1| - 0.21 11.9 3.5 30 5.1 0.6 3.3 3 0 0 3 3 3 0 Alanine-zipper, major outer membrane lipoprotein T3SSipB PF16535.5 gi|55378287|ref|YP_136137.1| - 0.51 10.8 4.4 3 8.3 2.5 2.5 2 1 0 2 2 2 0 Type III cell invasion protein SipB HisKA_3 PF07730.13 gi|55378287|ref|YP_136137.1| - 3.8 8.1 7.6 23 5.6 0.1 3.5 2 2 2 4 4 4 0 Histidine kinase Ribosomal_S8e PF01201.22 gi|55378288|ref|YP_136138.1| - 3.6e-30 104.9 5.9 4.2e-30 104.7 5.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PUB PF09409.10 gi|55378288|ref|YP_136138.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 PUB domain DUF2240 PF09999.9 gi|55378289|ref|YP_136139.1| - 1.3e-54 183.8 0.8 1.5e-54 183.6 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF373 PF04123.13 gi|55378291|ref|YP_136141.1| - 0.3 10.5 8.0 6.1 6.2 8.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF373) PrgI PF12666.7 gi|55378291|ref|YP_136141.1| - 2.3 9.0 10.8 0.53 11.0 1.8 2.4 2 0 0 2 2 2 0 PrgI family protein OMPdecase PF00215.24 gi|55378292|ref|YP_136142.1| - 3.6e-33 115.1 0.0 4.1e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family MutL PF13941.6 gi|55378292|ref|YP_136142.1| - 0.03 12.9 0.2 0.044 12.4 0.2 1.1 1 0 0 1 1 1 0 MutL protein GATase PF00117.28 gi|55378294|ref|YP_136144.1| - 5.2e-43 147.0 0.0 5.8e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|55378294|ref|YP_136144.1| - 3e-08 33.7 0.2 2.5e-07 30.7 0.2 2.0 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|55378295|ref|YP_136145.1| - 9.4e-93 310.5 0.0 3.4e-92 308.7 0.0 1.8 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|55378295|ref|YP_136145.1| - 2.3e-18 66.8 0.0 1.4e-16 61.0 0.0 3.0 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|55378296|ref|YP_136146.1| - 5e-33 114.5 0.2 5.7e-33 114.3 0.2 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|55378296|ref|YP_136146.1| - 0.0079 15.5 0.5 0.016 14.6 0.0 1.8 2 0 0 2 2 2 1 Thiamine monophosphate synthase His_biosynth PF00977.21 gi|55378296|ref|YP_136146.1| - 0.021 14.3 0.6 0.061 12.8 0.1 1.9 2 0 0 2 2 2 0 Histidine biosynthesis protein NMO PF03060.15 gi|55378296|ref|YP_136146.1| - 0.04 13.3 5.1 0.025 14.0 1.2 2.0 2 0 0 2 2 2 0 Nitronate monooxygenase Trimer_CC PF08954.11 gi|55378296|ref|YP_136146.1| - 0.096 12.3 0.0 0.27 10.8 0.1 1.7 2 0 0 2 2 2 0 Trimerisation motif DUF1386 PF07138.11 gi|55378296|ref|YP_136146.1| - 0.2 10.9 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) Glycos_transf_3 PF00591.21 gi|55378297|ref|YP_136147.1| - 4e-101 337.9 2.2 5.2e-101 337.5 2.2 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|55378297|ref|YP_136147.1| - 5e-18 64.7 4.2 1.4e-17 63.2 3.8 2.0 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|55378297|ref|YP_136147.1| - 0.011 15.4 0.0 0.032 14.0 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) PadR PF03551.14 gi|55378298|ref|YP_136148.1| - 0.002 18.1 0.1 0.0096 15.9 0.1 1.9 1 1 1 2 2 2 2 Transcriptional regulator PadR-like family Cdc6_C PF09079.11 gi|55378298|ref|YP_136148.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.6 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain TrmB PF01978.19 gi|55378298|ref|YP_136148.1| - 0.15 11.9 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CBS PF00571.28 gi|55378301|ref|YP_136151.1| - 5.7e-41 138.8 15.7 4.4e-14 52.7 2.9 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|55378301|ref|YP_136151.1| - 0.0027 18.5 0.0 0.011 16.5 0.0 2.1 1 1 1 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF3010 PF11215.8 gi|55378301|ref|YP_136151.1| - 0.078 13.3 0.3 1 9.6 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3010) ADH_N_2 PF16884.5 gi|55378302|ref|YP_136152.1| - 5.4e-39 132.4 0.0 1.2e-38 131.3 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|55378302|ref|YP_136152.1| - 3.6e-19 69.0 0.0 5e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|55378302|ref|YP_136152.1| - 8.2e-10 39.9 0.0 1.5e-09 39.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|55378302|ref|YP_136152.1| - 0.1 12.3 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AAA PF00004.29 gi|55378303|ref|YP_136153.1| - 5.1e-100 331.1 0.0 1.8e-49 167.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|55378303|ref|YP_136153.1| - 6.8e-31 106.3 0.0 4.3e-30 103.7 0.1 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|55378303|ref|YP_136153.1| - 4e-27 93.7 4.6 1.1e-12 47.5 0.9 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|55378303|ref|YP_136153.1| - 3.6e-17 61.9 0.1 2.5e-16 59.2 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|55378303|ref|YP_136153.1| - 3.6e-15 56.1 0.0 7.3e-07 29.1 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|55378303|ref|YP_136153.1| - 5.6e-14 52.9 1.4 8.3e-06 26.3 0.2 4.2 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|55378303|ref|YP_136153.1| - 5.2e-13 49.5 0.0 1.5e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|55378303|ref|YP_136153.1| - 5.7e-13 49.0 2.0 5.9e-05 23.1 0.0 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|55378303|ref|YP_136153.1| - 1.7e-11 44.5 0.6 0.0094 16.2 0.0 4.3 2 2 2 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|55378303|ref|YP_136153.1| - 8e-11 42.3 0.0 6.5e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|55378303|ref|YP_136153.1| - 1.2e-10 41.2 0.0 0.00037 19.8 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|55378303|ref|YP_136153.1| - 2.1e-07 30.9 0.0 0.017 14.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|55378303|ref|YP_136153.1| - 2.9e-07 30.6 0.0 0.0058 16.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|55378303|ref|YP_136153.1| - 7.8e-07 29.7 0.0 0.076 13.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|55378303|ref|YP_136153.1| - 1.2e-06 28.1 0.1 0.054 12.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|55378303|ref|YP_136153.1| - 1.3e-06 28.1 0.4 1.5 8.4 0.0 4.4 4 0 0 4 4 4 1 AAA domain RNA_helicase PF00910.22 gi|55378303|ref|YP_136153.1| - 1.4e-06 28.6 0.0 0.059 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|55378303|ref|YP_136153.1| - 2.2e-06 27.5 0.1 0.11 12.1 0.0 3.4 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|55378303|ref|YP_136153.1| - 3.2e-06 26.8 0.0 0.077 12.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|55378303|ref|YP_136153.1| - 8e-06 25.7 0.0 0.1 12.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|55378303|ref|YP_136153.1| - 8.4e-06 26.1 0.0 0.038 14.3 0.0 2.9 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|55378303|ref|YP_136153.1| - 1.5e-05 25.1 0.0 0.92 9.4 0.0 3.9 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|55378303|ref|YP_136153.1| - 1.7e-05 24.3 0.5 0.43 10.0 0.0 3.5 3 0 0 3 3 3 2 PhoH-like protein TsaE PF02367.17 gi|55378303|ref|YP_136153.1| - 2.2e-05 24.4 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|55378303|ref|YP_136153.1| - 3.5e-05 23.2 2.7 0.48 9.7 0.0 3.7 4 0 0 4 4 4 2 KaiC ABC_tran PF00005.27 gi|55378303|ref|YP_136153.1| - 4.9e-05 23.9 0.0 0.49 10.9 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|55378303|ref|YP_136153.1| - 5.4e-05 23.0 0.0 0.23 11.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|55378303|ref|YP_136153.1| - 5.6e-05 23.1 0.3 0.3 10.8 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|55378303|ref|YP_136153.1| - 6.7e-05 22.7 0.1 0.51 10.0 0.0 2.9 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|55378303|ref|YP_136153.1| - 8.5e-05 21.8 0.0 0.24 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|55378303|ref|YP_136153.1| - 9.4e-05 21.7 0.0 0.12 11.6 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.17 gi|55378303|ref|YP_136153.1| - 0.00031 19.9 0.1 0.37 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|55378303|ref|YP_136153.1| - 0.00034 20.0 0.0 0.35 10.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|55378303|ref|YP_136153.1| - 0.00041 20.3 0.1 0.57 10.1 0.0 3.2 3 0 0 3 3 2 1 NACHT domain AAA_17 PF13207.6 gi|55378303|ref|YP_136153.1| - 0.00067 20.1 0.0 1.5 9.2 0.0 3.4 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|55378303|ref|YP_136153.1| - 0.00096 18.5 0.2 1.8 7.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Vps4_C PF09336.10 gi|55378303|ref|YP_136153.1| - 0.0013 18.7 1.2 0.16 12.0 0.0 3.0 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_19 PF13245.6 gi|55378303|ref|YP_136153.1| - 0.0016 18.8 0.7 2.3 8.6 0.0 2.8 2 1 1 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|55378303|ref|YP_136153.1| - 0.0017 18.5 0.0 3.1 7.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|55378303|ref|YP_136153.1| - 0.0021 17.5 0.8 0.68 9.3 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase NTPase_1 PF03266.15 gi|55378303|ref|YP_136153.1| - 0.0024 17.8 0.1 2.9 7.8 0.1 3.1 2 1 0 2 2 2 1 NTPase Bac_DnaA PF00308.18 gi|55378303|ref|YP_136153.1| - 0.0057 16.5 0.1 5.3 6.8 0.0 2.9 3 0 0 3 3 2 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|55378303|ref|YP_136153.1| - 0.012 15.3 0.1 4.4 7.0 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|55378303|ref|YP_136153.1| - 0.018 14.8 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|55378303|ref|YP_136153.1| - 0.019 14.2 0.1 4.7 6.3 0.0 3.0 2 2 1 4 4 4 0 KAP family P-loop domain AFG1_ATPase PF03969.16 gi|55378303|ref|YP_136153.1| - 0.021 13.7 0.0 1.8 7.4 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase CPT PF07931.12 gi|55378303|ref|YP_136153.1| - 0.024 14.5 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein ResIII PF04851.15 gi|55378303|ref|YP_136153.1| - 0.034 14.2 0.0 8.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Rad17 PF03215.15 gi|55378303|ref|YP_136153.1| - 0.039 13.9 0.0 9.3 6.1 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain Hydin_ADK PF17213.3 gi|55378303|ref|YP_136153.1| - 0.045 14.0 0.0 4.3 7.6 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|55378303|ref|YP_136153.1| - 0.051 13.2 0.0 5.5 6.6 0.0 2.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Torsin PF06309.11 gi|55378303|ref|YP_136153.1| - 0.074 13.2 0.0 4.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Torsin SKI PF01202.22 gi|55378303|ref|YP_136153.1| - 0.085 13.0 0.0 11 6.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin2 PF13189.6 gi|55378303|ref|YP_136153.1| - 0.1 12.8 0.3 7.1 6.7 0.0 2.6 3 0 0 3 3 2 0 Cytidylate kinase-like family Usp PF00582.26 gi|55378304|ref|YP_136154.1| - 1.2e-08 35.6 1.0 1.6e-08 35.2 1.0 1.2 1 0 0 1 1 1 1 Universal stress protein family GAD PF02938.14 gi|55378304|ref|YP_136154.1| - 0.07 13.4 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 GAD domain DUF111 PF01969.17 gi|55378305|ref|YP_136155.1| - 5.2e-131 437.2 1.5 6e-131 437.0 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.20 gi|55378305|ref|YP_136155.1| - 0.11 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Phage_TAC_7 PF10109.9 gi|55378306|ref|YP_136156.1| - 0.01 15.9 1.5 0.16 12.1 0.2 2.3 2 1 0 2 2 2 0 Phage tail assembly chaperone proteins, E, or 41 or 14 DUF348 PF03990.14 gi|55378306|ref|YP_136156.1| - 0.028 14.2 0.1 3.3 7.5 0.1 2.6 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain bPH_6 PF10756.9 gi|55378307|ref|YP_136157.1| - 0.0077 16.3 0.4 0.0077 16.3 0.4 2.0 2 0 0 2 2 2 1 Bacterial PH domain MGS PF02142.22 gi|55378307|ref|YP_136157.1| - 0.2 11.8 0.0 0.35 11.1 0.0 1.3 1 0 0 1 1 1 0 MGS-like domain DUF2207 PF09972.9 gi|55378307|ref|YP_136157.1| - 5.5 5.6 8.2 1 8.0 4.0 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Rad51 PF08423.11 gi|55378308|ref|YP_136158.1| - 8.7e-15 54.7 0.0 1e-14 54.5 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|55378308|ref|YP_136158.1| - 2e-05 24.3 1.8 2.8e-05 23.8 1.8 1.1 1 0 0 1 1 1 1 AAA domain Isochorismatase PF00857.20 gi|55378308|ref|YP_136158.1| - 0.033 14.4 0.0 0.048 13.9 0.0 1.2 1 0 0 1 1 1 0 Isochorismatase family AAA_24 PF13479.6 gi|55378308|ref|YP_136158.1| - 0.041 13.6 0.1 0.066 12.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Zot PF05707.12 gi|55378308|ref|YP_136158.1| - 0.074 12.7 0.0 0.092 12.4 0.0 1.1 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) MPTase-PolyVal PF18818.1 gi|55378308|ref|YP_136158.1| - 0.08 13.0 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 Metallopeptidase superfamily domain PhoU PF01895.19 gi|55378309|ref|YP_136159.1| - 6.4e-35 119.5 16.4 5e-21 75.0 1.3 2.1 2 0 0 2 2 2 2 PhoU domain ATP-synt_D PF01813.17 gi|55378309|ref|YP_136159.1| - 0.017 15.0 0.1 0.037 13.9 0.1 1.6 1 1 0 1 1 1 0 ATP synthase subunit D Trigger_N PF05697.13 gi|55378309|ref|YP_136159.1| - 0.055 13.8 0.5 0.15 12.4 0.1 1.9 1 1 1 2 2 2 0 Bacterial trigger factor protein (TF) TrkA_N PF02254.18 gi|55378311|ref|YP_136161.1| - 9.6e-52 174.2 12.7 1.2e-25 90.0 0.6 3.3 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|55378311|ref|YP_136161.1| - 3.5e-31 106.8 8.8 2.6e-16 59.2 0.7 3.5 3 1 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|55378311|ref|YP_136161.1| - 7.7e-11 42.4 2.4 0.00011 22.6 0.1 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|55378311|ref|YP_136161.1| - 3.4e-10 40.1 0.1 1.4e-05 25.2 0.0 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|55378311|ref|YP_136161.1| - 9.2e-07 29.2 1.9 0.00047 20.4 0.2 2.7 2 1 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|55378311|ref|YP_136161.1| - 8.8e-06 25.2 2.5 0.028 13.7 0.0 2.5 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|55378311|ref|YP_136161.1| - 1e-05 25.0 0.4 0.0013 18.0 0.0 2.4 3 0 0 3 3 3 1 FAD binding domain F420_oxidored PF03807.17 gi|55378311|ref|YP_136161.1| - 1.3e-05 25.7 0.5 0.015 15.9 0.1 3.5 3 2 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|55378311|ref|YP_136161.1| - 7.9e-05 22.6 0.3 0.0054 16.6 0.1 2.5 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|55378311|ref|YP_136161.1| - 0.0001 21.7 2.0 0.05 12.8 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.26 gi|55378311|ref|YP_136161.1| - 0.0002 21.4 4.3 0.00066 19.7 0.1 3.6 3 1 2 5 5 5 1 Zinc-binding dehydrogenase Castor_Poll_mid PF06241.12 gi|55378311|ref|YP_136161.1| - 0.00032 20.6 0.0 0.23 11.4 0.0 2.6 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel XdhC_C PF13478.6 gi|55378311|ref|YP_136161.1| - 0.00032 21.2 2.4 0.63 10.5 0.2 3.2 2 2 1 3 3 3 2 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|55378311|ref|YP_136161.1| - 0.00033 20.3 0.2 0.0029 17.2 0.2 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|55378311|ref|YP_136161.1| - 0.00034 21.1 0.3 1.2 9.8 0.0 3.3 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.22 gi|55378311|ref|YP_136161.1| - 0.00036 21.3 0.5 0.072 13.9 0.2 2.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold ThiF PF00899.21 gi|55378311|ref|YP_136161.1| - 0.00051 19.5 1.6 0.018 14.4 0.1 2.6 2 1 0 2 2 2 1 ThiF family DAO PF01266.24 gi|55378311|ref|YP_136161.1| - 0.0015 18.2 1.7 0.035 13.7 0.1 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase adh_short PF00106.25 gi|55378311|ref|YP_136161.1| - 0.0025 17.3 0.7 0.68 9.3 0.0 2.5 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|55378311|ref|YP_136161.1| - 0.0027 17.9 0.4 0.057 13.6 0.0 2.8 2 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase HEM4 PF02602.15 gi|55378311|ref|YP_136161.1| - 0.0028 17.0 0.0 0.0087 15.4 0.0 1.8 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF1188 PF06690.11 gi|55378311|ref|YP_136161.1| - 0.0034 17.0 0.0 0.0091 15.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) ApbA PF02558.16 gi|55378311|ref|YP_136161.1| - 0.0052 16.4 0.0 0.03 14.0 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|55378311|ref|YP_136161.1| - 0.0055 16.1 0.1 0.79 9.1 0.1 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|55378311|ref|YP_136161.1| - 0.0074 16.4 1.0 0.32 11.1 1.7 2.5 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_8 PF13450.6 gi|55378311|ref|YP_136161.1| - 0.017 15.4 0.0 3.3 8.0 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Nitro_FeMo-Co PF02579.17 gi|55378311|ref|YP_136161.1| - 0.046 14.0 0.2 41 4.6 0.0 3.5 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor CbiA PF01656.23 gi|55378311|ref|YP_136161.1| - 0.059 13.4 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PglD_N PF17836.1 gi|55378311|ref|YP_136161.1| - 0.075 13.7 0.5 0.96 10.1 0.3 2.6 2 0 0 2 2 2 0 PglD N-terminal domain DUF5096 PF17019.5 gi|55378311|ref|YP_136161.1| - 0.087 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5096) NAD_Gly3P_dh_N PF01210.23 gi|55378311|ref|YP_136161.1| - 0.12 12.4 0.1 4.9 7.1 0.0 2.6 3 0 0 3 3 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HAS-barrel PF09378.10 gi|55378311|ref|YP_136161.1| - 0.12 12.5 6.0 3.2 8.0 0.2 3.5 2 1 0 2 2 2 0 HAS barrel domain MRP-S31 PF15433.6 gi|55378311|ref|YP_136161.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 UvrB PF12344.8 gi|55378312|ref|YP_136162.1| - 0.13 12.1 0.4 0.19 11.6 0.4 1.3 1 0 0 1 1 1 0 Ultra-violet resistance protein B HTH_IclR PF09339.10 gi|55378315|ref|YP_136165.1| - 0.0013 18.5 0.0 0.0037 17.0 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55378315|ref|YP_136165.1| - 0.0062 16.1 0.1 0.025 14.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55378315|ref|YP_136165.1| - 0.01 15.7 0.3 0.04 13.8 0.1 2.1 2 0 0 2 2 2 0 MarR family TrmB PF01978.19 gi|55378315|ref|YP_136165.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4680 PF15730.5 gi|55378315|ref|YP_136165.1| - 1.8 8.9 3.9 2.7 8.3 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4680) HTH_10 PF04967.12 gi|55378316|ref|YP_136166.1| - 4.6e-15 55.2 0.0 7.7e-15 54.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|55378316|ref|YP_136166.1| - 2.4e-06 27.0 0.1 4.7e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55378316|ref|YP_136166.1| - 9.4e-05 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|55378316|ref|YP_136166.1| - 0.00031 20.2 0.1 0.00097 18.6 0.0 1.8 1 1 1 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|55378316|ref|YP_136166.1| - 0.00046 20.2 0.0 0.0014 18.7 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|55378316|ref|YP_136166.1| - 0.0015 18.3 2.6 0.0025 17.6 0.1 2.6 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|55378316|ref|YP_136166.1| - 0.0022 17.7 0.0 0.0048 16.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|55378316|ref|YP_136166.1| - 0.012 15.7 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain MarR PF01047.22 gi|55378316|ref|YP_136166.1| - 0.018 15.0 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 gi|55378316|ref|YP_136166.1| - 0.03 14.7 0.3 0.17 12.3 0.1 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|55378316|ref|YP_136166.1| - 0.043 13.8 0.0 0.22 11.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family YdaS_antitoxin PF15943.5 gi|55378316|ref|YP_136166.1| - 0.067 13.1 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF3804 PF12707.7 gi|55378316|ref|YP_136166.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3804) DUF4330 PF14221.6 gi|55378317|ref|YP_136167.1| - 8.6e-27 94.4 11.8 2.7e-10 40.7 0.0 5.3 4 1 0 4 4 4 4 Domain of unknown function (DUF4330) HlyD_3 PF13437.6 gi|55378317|ref|YP_136167.1| - 0.12 13.1 6.0 0.43 11.3 0.2 3.9 3 1 2 5 5 5 0 HlyD family secretion protein CbiG_N PF11760.8 gi|55378318|ref|YP_136168.1| - 0.14 12.2 0.0 26 4.9 0.0 2.5 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal MazE_antitoxin PF04014.18 gi|55378319|ref|YP_136169.1| - 4.8e-10 39.1 0.1 6.9e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|55378319|ref|YP_136169.1| - 2.7e-05 24.5 0.0 4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DDE_3 PF13358.6 gi|55378321|ref|YP_136171.1| - 4.3e-13 49.2 0.0 1e-12 48.0 0.0 1.6 2 0 0 2 2 2 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|55378321|ref|YP_136171.1| - 4.5e-09 36.8 2.6 5.9e-09 36.4 0.0 2.6 4 0 0 4 4 4 1 Homeodomain-like domain HTH_23 PF13384.6 gi|55378321|ref|YP_136171.1| - 9.3e-08 31.7 0.8 4.7e-06 26.2 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|55378321|ref|YP_136171.1| - 2.2e-05 24.4 0.0 6.2e-05 22.9 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|55378321|ref|YP_136171.1| - 0.0002 21.4 0.2 0.00092 19.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_33 PF13592.6 gi|55378321|ref|YP_136171.1| - 0.0051 16.4 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix DDE_1 PF03184.19 gi|55378321|ref|YP_136171.1| - 0.043 13.5 0.0 0.068 12.8 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease PRiA4_ORF3 PF07929.11 gi|55378322|ref|YP_136172.1| - 4.5e-17 62.3 0.0 6.7e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 Plasmid pRiA4b ORF-3-like protein DUF111 PF01969.17 gi|55378322|ref|YP_136172.1| - 0.21 10.6 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF111 Zn-ribbon_8 PF09723.10 gi|55378323|ref|YP_136173.1| - 0.23 11.6 0.4 0.46 10.6 0.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain SMC_ScpB PF04079.16 gi|55378325|ref|YP_136175.1| - 0.096 12.3 0.1 0.41 10.3 0.0 1.9 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB Peripla_BP_4 PF13407.6 gi|55378327|ref|YP_136177.1| - 0.13 11.8 0.1 0.18 11.3 0.1 1.4 1 1 0 1 1 1 0 Periplasmic binding protein domain SWIM PF04434.17 gi|55378329|ref|YP_136179.1| - 6.8e-09 35.2 0.3 1.1e-08 34.5 0.3 1.3 1 0 0 1 1 1 1 SWIM zinc finger Cut8 PF08559.10 gi|55378329|ref|YP_136179.1| - 0.0076 15.9 0.0 0.0097 15.5 0.0 1.1 1 0 0 1 1 1 1 Cut8, nuclear proteasome tether protein FaeA PF04703.12 gi|55378331|ref|YP_136181.1| - 0.0061 16.9 0.0 0.03 14.7 0.0 1.9 2 0 0 2 2 2 1 FaeA-like protein TrmB PF01978.19 gi|55378331|ref|YP_136181.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB OrfB_Zn_ribbon PF07282.11 gi|55378333|ref|YP_136183.1| - 2.7e-23 81.7 1.5 2.7e-23 81.7 1.5 1.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|55378333|ref|YP_136183.1| - 7.2e-09 35.9 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Probable transposase HypA PF01155.19 gi|55378333|ref|YP_136183.1| - 0.0087 16.1 0.2 0.017 15.1 0.2 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_2 PF03107.16 gi|55378333|ref|YP_136183.1| - 0.083 13.2 1.4 0.16 12.3 1.4 1.4 1 0 0 1 1 1 0 C1 domain RNA_POL_M_15KD PF02150.16 gi|55378333|ref|YP_136183.1| - 0.32 10.9 3.1 1.1 9.2 3.1 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-C2H2_11 PF16622.5 gi|55378333|ref|YP_136183.1| - 0.79 9.5 4.5 11 5.9 0.3 2.6 2 0 0 2 2 2 0 zinc-finger C2H2-type DNA_RNApol_7kD PF03604.13 gi|55378333|ref|YP_136183.1| - 4.5 7.0 6.7 3.8 7.3 2.7 2.7 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|55378333|ref|YP_136183.1| - 5.4 6.8 10.9 0.84 9.4 1.5 3.1 3 0 0 3 3 3 0 Rubredoxin metal binding domain DDE_Tnp_1 PF01609.21 gi|55378334|ref|YP_136184.1| - 1.5e-21 77.1 2.9 3.4e-21 75.9 2.9 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|55378334|ref|YP_136184.1| - 0.0019 18.2 0.0 0.0032 17.5 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF1989 PF09347.10 gi|55378334|ref|YP_136184.1| - 0.0025 17.5 0.2 0.0038 16.9 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1989) DUF772 PF05598.11 gi|55378334|ref|YP_136184.1| - 0.0054 16.7 0.0 0.015 15.3 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_6 PF13751.6 gi|55378334|ref|YP_136184.1| - 0.046 13.9 0.8 0.094 13.0 0.0 1.9 2 1 0 2 2 2 0 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|55378334|ref|YP_136184.1| - 0.076 13.4 0.2 0.19 12.1 0.2 1.7 1 0 0 1 1 1 0 Transposase DDE domain rve PF00665.26 gi|55378334|ref|YP_136184.1| - 0.11 12.7 0.5 0.48 10.6 0.5 2.0 1 1 0 1 1 1 0 Integrase core domain HTH_29 PF13551.6 gi|55378335|ref|YP_136185.1| - 1.4e-11 44.3 0.1 3.2e-11 43.1 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.6 gi|55378335|ref|YP_136185.1| - 5.6e-10 39.7 0.2 2.6e-09 37.6 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.6 gi|55378335|ref|YP_136185.1| - 1.5e-08 34.2 1.8 2.6e-08 33.4 0.2 2.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.6 gi|55378335|ref|YP_136185.1| - 1.9e-08 34.3 1.6 3.6e-08 33.4 0.7 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_33 PF13592.6 gi|55378335|ref|YP_136185.1| - 1.6e-06 27.6 0.0 0.013 15.1 0.0 3.4 3 0 0 3 3 3 2 Winged helix-turn helix CENP-T_N PF16171.5 gi|55378335|ref|YP_136185.1| - 0.0024 16.8 0.0 0.0034 16.3 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T N-terminus LZ_Tnp_IS481 PF13011.6 gi|55378335|ref|YP_136185.1| - 0.014 15.9 0.1 0.025 15.1 0.1 1.5 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 RRM PF10378.9 gi|55378335|ref|YP_136185.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 Putative RRM domain BAMBI PF06211.12 gi|55378336|ref|YP_136186.1| - 0.12 12.6 0.8 0.52 10.6 0.3 2.0 2 0 0 2 2 2 0 BMP and activin membrane-bound inhibitor (BAMBI) N-terminal domain PGF-CTERM PF18204.1 gi|55378338|ref|YP_136188.1| - 8.9 6.4 9.7 0.28 11.2 2.2 2.1 2 0 0 2 2 2 0 PGF-CTERM motif OrfB_IS605 PF01385.19 gi|55378339|ref|YP_136189.1| - 1.1e-21 77.2 0.2 3e-21 75.9 0.0 1.8 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|55378339|ref|YP_136189.1| - 3.2e-21 75.0 2.3 3.2e-21 75.0 2.3 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|55378339|ref|YP_136189.1| - 0.016 15.6 1.2 0.057 13.7 1.2 2.0 1 0 0 1 1 1 0 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|55378339|ref|YP_136189.1| - 0.041 13.9 3.3 0.11 12.5 3.3 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|55378339|ref|YP_136189.1| - 0.083 12.6 4.2 0.19 11.5 4.2 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|55378339|ref|YP_136189.1| - 4.3 6.9 8.1 17 5.0 8.1 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding UPF0175 PF03683.13 gi|55378341|ref|YP_136191.1| - 6.2e-08 32.2 0.3 1.6e-07 30.9 0.3 1.7 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|55378341|ref|YP_136191.1| - 0.022 14.7 0.7 0.022 14.7 0.7 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family FoP_duplication PF13865.6 gi|55378341|ref|YP_136191.1| - 3.1 8.4 6.5 3 8.5 0.1 2.9 3 0 0 3 3 3 0 C-terminal duplication domain of Friend of PRMT1 Cdc6_C PF09079.11 gi|55378342|ref|YP_136192.1| - 2.8e-18 65.7 0.0 8.8e-18 64.1 0.0 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|55378342|ref|YP_136192.1| - 1.1e-10 41.9 0.0 3.1e-10 40.5 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|55378342|ref|YP_136192.1| - 3.2e-09 37.4 0.3 1.5e-08 35.3 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|55378342|ref|YP_136192.1| - 1.4e-06 27.7 0.0 1.5e-05 24.3 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain NACHT PF05729.12 gi|55378342|ref|YP_136192.1| - 5e-06 26.5 0.0 9.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TniB PF05621.11 gi|55378342|ref|YP_136192.1| - 0.00021 20.7 0.0 0.00036 20.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|55378342|ref|YP_136192.1| - 0.00025 21.5 0.0 0.00061 20.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|55378342|ref|YP_136192.1| - 0.003 18.1 0.0 0.012 16.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|55378342|ref|YP_136192.1| - 0.0089 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|55378342|ref|YP_136192.1| - 0.011 15.0 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_32 PF13654.6 gi|55378342|ref|YP_136192.1| - 0.011 14.6 0.4 0.52 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|55378342|ref|YP_136192.1| - 0.012 15.6 0.0 0.03 14.2 0.0 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|55378342|ref|YP_136192.1| - 0.015 15.1 0.3 3.2 7.5 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|55378342|ref|YP_136192.1| - 0.016 15.6 0.0 0.027 14.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|55378342|ref|YP_136192.1| - 0.02 14.2 0.0 0.063 12.6 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|55378342|ref|YP_136192.1| - 0.022 13.7 0.0 0.048 12.6 0.0 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activat PF00158.26 gi|55378342|ref|YP_136192.1| - 0.023 14.4 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain TsaE PF02367.17 gi|55378342|ref|YP_136192.1| - 0.027 14.5 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|55378342|ref|YP_136192.1| - 0.027 14.5 0.1 0.15 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.6 gi|55378342|ref|YP_136192.1| - 0.13 12.4 0.0 0.35 11.0 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain PIF1 PF05970.14 gi|55378342|ref|YP_136192.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase RsgA_GTPase PF03193.16 gi|55378342|ref|YP_136192.1| - 0.17 11.8 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ResIII PF04851.15 gi|55378342|ref|YP_136192.1| - 0.17 11.9 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|55378342|ref|YP_136192.1| - 0.17 11.5 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|55378342|ref|YP_136192.1| - 0.24 10.0 0.1 0.43 9.2 0.0 1.4 2 0 0 2 2 2 0 AAA domain Cdc6_C PF09079.11 gi|55378343|ref|YP_136193.1| - 1.3e-16 60.4 0.0 2.5e-16 59.4 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain ABC_tran PF00005.27 gi|55378344|ref|YP_136194.1| - 6.3e-32 110.9 0.0 1.1e-31 110.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|55378344|ref|YP_136194.1| - 1.6e-07 31.3 7.8 2.3e-07 30.7 7.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|55378344|ref|YP_136194.1| - 3.1e-06 26.8 0.4 3e-05 23.6 1.2 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|55378344|ref|YP_136194.1| - 0.00011 22.2 0.0 0.00027 20.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase DUF4386 PF14329.6 gi|55378344|ref|YP_136194.1| - 0.00055 19.9 1.7 0.00055 19.9 1.7 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4386) AAA_25 PF13481.6 gi|55378344|ref|YP_136194.1| - 0.0057 16.2 0.2 0.031 13.8 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55378344|ref|YP_136194.1| - 0.0074 16.0 0.0 0.015 15.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|55378344|ref|YP_136194.1| - 0.016 15.5 0.3 0.12 12.6 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|55378344|ref|YP_136194.1| - 0.046 13.4 1.0 1.7 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|55378344|ref|YP_136194.1| - 0.091 13.2 0.1 0.25 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|55378344|ref|YP_136194.1| - 0.11 12.3 0.7 1 9.1 0.0 2.7 3 1 1 4 4 4 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|55378344|ref|YP_136194.1| - 0.18 12.2 1.8 0.61 10.4 0.9 2.5 2 1 0 2 2 2 0 AAA ATPase domain NUDIX PF00293.28 gi|55378345|ref|YP_136195.1| - 2e-12 47.3 0.0 3.3e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Phage_XkdX PF09693.10 gi|55378345|ref|YP_136195.1| - 0.11 12.5 0.1 0.3 11.1 0.1 1.7 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) GDP_Man_Dehyd PF16363.5 gi|55378346|ref|YP_136196.1| - 1.2e-69 235.3 0.0 1.7e-69 234.8 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|55378346|ref|YP_136196.1| - 9.5e-50 169.3 0.1 1.2e-49 168.9 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|55378346|ref|YP_136196.1| - 1.4e-16 60.5 0.0 8.4e-12 44.8 0.0 2.5 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|55378346|ref|YP_136196.1| - 5.7e-12 45.2 0.1 7.4e-12 44.8 0.1 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|55378346|ref|YP_136196.1| - 1.6e-11 43.9 0.1 1.3e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|55378346|ref|YP_136196.1| - 2e-08 33.9 0.2 1e-05 25.1 0.1 2.5 2 1 0 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|55378346|ref|YP_136196.1| - 3.2e-07 30.4 0.1 4.8e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|55378346|ref|YP_136196.1| - 1.9e-06 27.2 0.0 1.8e-05 24.0 0.0 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|55378346|ref|YP_136196.1| - 0.00022 20.9 0.1 0.0003 20.4 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|55378346|ref|YP_136196.1| - 0.00034 20.6 0.0 0.00054 19.9 0.0 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.6 gi|55378346|ref|YP_136196.1| - 0.021 14.4 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|55378347|ref|YP_136197.1| - 3.1e-59 200.4 0.0 3.8e-59 200.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55378347|ref|YP_136197.1| - 1.9e-33 116.3 0.0 1.6e-27 96.8 0.0 2.8 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|55378347|ref|YP_136197.1| - 1.3e-08 34.3 0.0 9.7e-08 31.4 0.0 2.0 2 0 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|55378347|ref|YP_136197.1| - 1.6e-08 34.0 0.0 0.0067 15.6 0.0 3.1 2 1 1 3 3 3 3 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|55378347|ref|YP_136197.1| - 6.4e-06 25.4 0.0 0.0012 17.9 0.0 2.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|55378347|ref|YP_136197.1| - 8.5e-05 21.8 0.1 0.00068 18.9 0.0 2.0 1 1 1 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|55378347|ref|YP_136197.1| - 0.0019 18.1 0.0 0.014 15.3 0.0 2.0 1 1 0 1 1 1 1 NAD(P)H-binding DDE_3 PF13358.6 gi|55378348|ref|YP_136198.1| - 2.2e-36 124.8 0.0 2.7e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 DDE superfamily endonuclease HTH_32 PF13565.6 gi|55378349|ref|YP_136199.1| - 4.4e-10 40.0 0.9 7.7e-10 39.3 0.1 1.7 2 1 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|55378349|ref|YP_136199.1| - 3.5e-07 30.2 0.0 5.1e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|55378349|ref|YP_136199.1| - 0.00033 20.4 0.0 0.00076 19.2 0.0 1.6 1 1 0 1 1 1 1 Homeodomain-like domain HTH_33 PF13592.6 gi|55378349|ref|YP_136199.1| - 0.0042 16.7 0.1 0.011 15.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_1 PF01527.20 gi|55378349|ref|YP_136199.1| - 0.057 13.7 0.0 0.11 12.9 0.0 1.6 1 1 0 1 1 1 0 Transposase HTH_28 PF13518.6 gi|55378349|ref|YP_136199.1| - 0.061 13.5 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain FANC_SAP PF18081.1 gi|55378349|ref|YP_136199.1| - 0.16 12.1 1.2 0.7 10.1 0.0 2.4 3 0 0 3 3 3 0 Fanconi anemia-associated nuclease SAP domain Glyco_transf_10 PF00852.19 gi|55378350|ref|YP_136200.1| - 2.4e-12 46.9 0.0 6.1e-12 45.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase family 10 (fucosyltransferase) C-term FAIM1 PF06905.13 gi|55378350|ref|YP_136200.1| - 0.0044 16.8 0.1 0.0084 15.8 0.1 1.4 1 0 0 1 1 1 1 Fas apoptotic inhibitory molecule (FAIM1) DDE_Tnp_1 PF01609.21 gi|55378351|ref|YP_136201.1| - 5.2e-12 45.9 1.7 2.6e-11 43.6 1.7 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|55378351|ref|YP_136201.1| - 0.002 18.1 0.3 0.0044 17.0 0.3 1.5 1 0 0 1 1 1 1 Transposase domain (DUF772) Vmethyltransf_C PF08456.10 gi|55378351|ref|YP_136201.1| - 0.071 12.7 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Viral methyltransferase C-terminal DDE_Tnp_1 PF01609.21 gi|55378354|ref|YP_136204.1| - 2.1e-07 30.8 0.2 2.5e-07 30.6 0.2 1.0 1 0 0 1 1 1 1 Transposase DDE domain DUF3377 PF11857.8 gi|55378356|ref|YP_136206.1| - 0.31 11.0 6.6 5 7.1 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3377) Glycos_transf_1 PF00534.20 gi|55378357|ref|YP_136207.1| - 1.1e-17 64.1 0.0 1.7e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55378357|ref|YP_136207.1| - 6.4e-17 62.2 0.0 1.3e-16 61.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|55378357|ref|YP_136207.1| - 3.1e-06 27.3 0.0 1.4e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|55378357|ref|YP_136207.1| - 0.00019 21.8 0.0 0.00039 20.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|55378357|ref|YP_136207.1| - 0.019 15.4 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|55378358|ref|YP_136208.1| - 3.6e-32 111.3 0.0 6e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|55378358|ref|YP_136208.1| - 3.2e-29 102.1 0.3 4.9e-29 101.5 0.3 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|55378358|ref|YP_136208.1| - 8.1e-29 100.8 0.1 1.5e-28 99.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|55378358|ref|YP_136208.1| - 6.5e-23 81.9 0.9 1.3e-22 80.9 0.7 1.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|55378358|ref|YP_136208.1| - 1.2e-07 31.8 0.0 2.1e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|55378358|ref|YP_136208.1| - 0.00021 21.6 0.0 0.00062 20.1 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_N PF04413.16 gi|55378358|ref|YP_136208.1| - 0.017 14.8 0.0 0.036 13.7 0.0 1.5 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Glyco_transf_5 PF08323.11 gi|55378358|ref|YP_136208.1| - 0.14 11.8 0.3 3.6 7.2 0.3 2.3 1 1 1 2 2 2 0 Starch synthase catalytic domain NTP_transferase PF00483.23 gi|55378359|ref|YP_136209.1| - 0.015 14.9 0.0 0.015 14.8 0.0 1.0 1 0 0 1 1 1 0 Nucleotidyl transferase DUF3863 PF12979.7 gi|55378359|ref|YP_136209.1| - 0.03 13.2 0.2 2.9 6.6 0.0 2.0 1 1 1 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3863) Bac_transf PF02397.16 gi|55378360|ref|YP_136210.1| - 2.6e-58 196.7 0.0 4.4e-58 195.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|55378360|ref|YP_136210.1| - 2.4e-13 50.3 0.9 3.9e-13 49.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1970) GPI2 PF06432.11 gi|55378360|ref|YP_136210.1| - 0.63 9.4 5.9 0.77 9.1 4.1 1.9 2 0 0 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase SIS PF01380.22 gi|55378361|ref|YP_136211.1| - 7.3e-53 177.9 1.1 1.5e-26 92.8 0.0 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|55378361|ref|YP_136211.1| - 0.023 14.7 1.3 0.3 11.1 0.0 2.8 2 2 1 4 4 4 0 SIS domain OrfB_Zn_ribbon PF07282.11 gi|55378362|ref|YP_136212.1| - 5e-20 71.2 0.1 1.1e-19 70.1 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|55378362|ref|YP_136212.1| - 0.035 14.3 0.0 0.067 13.4 0.0 1.4 1 0 0 1 1 1 0 Probable transposase SecY PF00344.20 gi|55378363|ref|YP_136213.1| - 8e-71 238.8 15.8 9.6e-71 238.5 15.8 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|55378363|ref|YP_136213.1| - 2.9e-09 36.6 0.9 7.6e-09 35.3 0.9 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|55378364|ref|YP_136214.1| - 9.8e-18 65.1 0.3 1.6e-17 64.4 0.3 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|55378365|ref|YP_136215.1| - 2.4e-09 36.9 0.0 3.6e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|55378366|ref|YP_136216.1| - 8e-25 86.1 0.0 1.2e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|55378366|ref|YP_136216.1| - 4.1e-22 77.9 0.1 9.5e-22 76.8 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|55378367|ref|YP_136217.1| - 1e-27 97.1 0.0 1.8e-17 63.8 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|55378367|ref|YP_136217.1| - 1.3e-07 32.0 0.0 1.8e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|55378368|ref|YP_136218.1| - 1.9e-56 190.1 6.1 2.1e-56 190.0 6.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.9 gi|55378368|ref|YP_136218.1| - 0.031 14.0 1.1 0.53 10.1 0.3 3.0 2 1 0 2 2 2 0 Short C-terminal domain SAND PF01342.21 gi|55378368|ref|YP_136218.1| - 0.15 11.8 0.2 0.24 11.1 0.2 1.3 1 0 0 1 1 1 0 SAND domain Ribosomal_L32e PF01655.18 gi|55378369|ref|YP_136219.1| - 2.2e-35 121.4 0.4 7.7e-35 119.6 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|55378369|ref|YP_136219.1| - 1.1e-14 54.7 1.4 1.1e-13 51.5 0.1 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|55378369|ref|YP_136219.1| - 7.6e-07 28.9 0.0 5e-06 26.3 0.0 2.3 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|55378369|ref|YP_136219.1| - 5.9e-06 25.9 0.2 0.012 15.5 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|55378369|ref|YP_136219.1| - 1.6e-05 25.1 0.0 0.00035 20.7 0.0 2.8 2 2 1 3 3 3 1 Pathogenicity locus HHH_2 PF12826.7 gi|55378369|ref|YP_136219.1| - 0.00015 21.8 0.1 0.0014 18.7 0.1 2.2 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|55378369|ref|YP_136219.1| - 0.0034 17.7 0.2 0.81 10.1 0.1 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|55378369|ref|YP_136219.1| - 0.0039 17.4 0.1 1 9.6 0.1 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif BAF PF02961.14 gi|55378369|ref|YP_136219.1| - 0.061 13.8 0.0 1.3 9.5 0.0 2.5 2 0 0 2 2 2 0 Barrier to autointegration factor IMS_HHH PF11798.8 gi|55378369|ref|YP_136219.1| - 0.12 12.7 0.0 6.5 7.3 0.0 2.5 2 0 0 2 2 2 0 IMS family HHH motif Ribosomal_L6 PF00347.23 gi|55378370|ref|YP_136220.1| - 2.2e-31 108.4 0.6 6.7e-15 55.5 0.0 2.0 2 0 0 2 2 2 2 Ribosomal protein L6 Cpn10 PF00166.21 gi|55378370|ref|YP_136220.1| - 0.095 12.8 0.1 0.25 11.4 0.1 1.8 1 1 0 1 1 1 0 Chaperonin 10 Kd subunit ArsA_HSP20 PF17886.1 gi|55378370|ref|YP_136220.1| - 0.12 12.0 1.4 22 4.7 0.0 3.6 4 0 0 4 4 4 0 HSP20-like domain found in ArsA Ribosomal_S8 PF00410.19 gi|55378371|ref|YP_136221.1| - 3e-23 82.2 0.0 3.9e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|297616204|ref|YP_003710345.1| - 4.1e-10 39.3 1.3 4.5e-10 39.1 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|297616204|ref|YP_003710345.1| - 0.0014 18.5 0.1 0.0018 18.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L5 PF00281.19 gi|55378372|ref|YP_136222.1| - 1e-19 70.6 0.0 1.7e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_L5_C PF00673.21 gi|55378372|ref|YP_136222.1| - 2.2e-19 69.4 0.0 3.5e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_S4e PF00900.20 gi|55378373|ref|YP_136223.1| - 1.2e-19 70.0 0.0 2.1e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|55378373|ref|YP_136223.1| - 1.5e-09 37.8 0.1 2.5e-09 37.1 0.1 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|55378373|ref|YP_136223.1| - 1.9e-05 24.3 0.3 4.4e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|55378373|ref|YP_136223.1| - 0.0023 17.8 0.2 0.0073 16.2 0.2 1.9 1 0 0 1 1 1 1 KOW motif Peptidase_S24 PF00717.23 gi|55378373|ref|YP_136223.1| - 0.0068 16.3 0.1 0.019 14.9 0.1 1.8 1 0 0 1 1 1 1 Peptidase S24-like Nha1_C PF08619.10 gi|55378373|ref|YP_136223.1| - 0.59 9.3 1.4 0.95 8.6 0.4 1.4 1 1 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus Ribosomal_L26 PF16906.5 gi|55378374|ref|YP_136224.1| - 2.6e-23 82.3 0.1 3e-23 82.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|55378374|ref|YP_136224.1| - 3.9e-08 33.0 2.7 4.1e-08 32.9 1.0 1.9 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.19 gi|55378375|ref|YP_136225.1| - 4.2e-36 123.7 0.2 5e-36 123.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|55378376|ref|YP_136226.1| - 1.5e-26 92.3 0.5 1.9e-26 92.0 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|55378376|ref|YP_136226.1| - 0.0055 17.1 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L29 PF00831.23 gi|55378377|ref|YP_136227.1| - 6.3e-20 70.9 0.2 8.3e-20 70.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|55378378|ref|YP_136228.1| - 5.9e-21 74.8 0.8 1.2e-20 73.8 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|55378378|ref|YP_136228.1| - 6.4e-17 61.2 0.0 1.7e-16 59.8 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|55378378|ref|YP_136228.1| - 0.00055 19.7 0.4 0.0058 16.4 0.1 2.8 3 0 0 3 3 3 1 KH domain KH_5 PF13184.6 gi|55378378|ref|YP_136228.1| - 0.068 13.3 0.0 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.6 gi|55378378|ref|YP_136228.1| - 3.5 7.6 5.2 0.54 10.2 0.2 2.3 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|55378379|ref|YP_136229.1| - 4.1e-21 75.2 0.0 5.1e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|55378380|ref|YP_136230.1| - 8.4e-30 102.5 0.0 1.5e-29 101.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|55378380|ref|YP_136230.1| - 0.13 11.3 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L2_C PF03947.18 gi|55378381|ref|YP_136231.1| - 4e-46 156.3 2.0 6e-46 155.7 2.0 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|55378381|ref|YP_136231.1| - 8.9e-18 64.0 0.0 3.6e-17 62.1 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|55378382|ref|YP_136232.1| - 1.7e-16 60.3 1.2 1.4e-15 57.4 1.2 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 Fusion_F0 PF13044.6 gi|55378382|ref|YP_136232.1| - 0.12 11.0 0.2 0.12 11.0 0.2 1.0 1 0 0 1 1 1 0 Fusion glycoprotein F0, Isavirus TusA PF01206.17 gi|55378382|ref|YP_136232.1| - 0.14 12.0 0.2 0.19 11.6 0.2 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L4 PF00573.22 gi|55378383|ref|YP_136233.1| - 1.3e-40 139.2 0.1 1.5e-40 139.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family GKAP PF03359.13 gi|55378383|ref|YP_136233.1| - 0.13 11.8 0.6 0.2 11.2 0.6 1.2 1 0 0 1 1 1 0 Guanylate-kinase-associated protein (GKAP) protein Ribosomal_L3 PF00297.22 gi|55378384|ref|YP_136234.1| - 1.5e-110 369.6 0.0 3.7e-110 368.4 0.0 1.6 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|55378385|ref|YP_136235.1| - 1.4e-67 228.3 0.0 1.5e-67 228.1 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF1508 PF07411.12 gi|55378386|ref|YP_136236.1| - 1.3e-43 146.6 3.1 1.3e-21 76.2 0.5 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) Tombus_P19 PF03220.13 gi|55378386|ref|YP_136236.1| - 0.00013 21.7 0.1 0.078 12.7 0.0 2.2 2 0 0 2 2 2 2 Tombusvirus P19 core protein CBM9_1 PF06452.11 gi|55378386|ref|YP_136236.1| - 0.0053 16.7 1.6 0.008 16.1 1.1 1.3 1 1 0 1 1 1 1 Carbohydrate family 9 binding domain-like DUF4097 PF13349.6 gi|55378386|ref|YP_136236.1| - 0.05 12.9 0.8 0.51 9.6 0.1 2.4 2 1 1 3 3 3 0 Putative adhesin DUF406 PF04175.12 gi|55378386|ref|YP_136236.1| - 0.094 13.2 1.1 16 6.1 0.0 3.4 2 2 3 5 5 5 0 Protein of unknown function (DUF406) IMP2_C PF18591.1 gi|55378386|ref|YP_136236.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Immune Mapped Protein 2 (IMP2) C-terminal domain Inhibitor_I42 PF09394.10 gi|55378386|ref|YP_136236.1| - 0.15 12.5 1.3 1 9.8 0.1 2.2 1 1 1 2 2 2 0 Chagasin family peptidase inhibitor I42 Thiamine_BP PF01910.17 gi|55378387|ref|YP_136237.1| - 1.8e-25 88.6 0.3 2.2e-25 88.4 0.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein MCH PF02289.16 gi|55378388|ref|YP_136238.1| - 1.1e-113 379.6 1.3 1.3e-113 379.4 1.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GTP_EFTU PF00009.27 gi|55378390|ref|YP_136240.1| - 1.7e-33 115.8 0.1 2.6e-33 115.2 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|55378390|ref|YP_136240.1| - 2.3e-12 47.1 0.5 6.9e-12 45.6 0.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|55378390|ref|YP_136240.1| - 2.5e-06 27.8 0.0 6.9e-06 26.3 0.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain ATP_bind_1 PF03029.17 gi|55378390|ref|YP_136240.1| - 0.035 13.9 1.0 0.14 11.9 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|55378390|ref|YP_136240.1| - 0.074 13.1 0.0 0.47 10.5 0.0 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase Hydrolase_3 PF08282.12 gi|55378391|ref|YP_136241.1| - 3.2e-27 95.9 0.0 1.3e-17 64.4 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55378391|ref|YP_136241.1| - 3.1e-09 37.4 1.2 9.3e-05 22.8 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|55378391|ref|YP_136241.1| - 2.2e-08 33.9 0.0 2.1e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|55378391|ref|YP_136241.1| - 0.0063 16.9 2.6 2.3 8.6 0.0 3.2 2 1 1 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|55378391|ref|YP_136241.1| - 0.02 15.0 0.3 0.49 10.5 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DnaJ PF00226.31 gi|55378392|ref|YP_136242.1| - 1.6e-15 57.0 0.1 2.3e-15 56.5 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|55378392|ref|YP_136242.1| - 0.0056 16.6 0.1 0.012 15.5 0.0 1.6 1 1 0 1 1 1 1 A repeated domain in UCH-protein eIF-3_zeta PF05091.12 gi|55378392|ref|YP_136242.1| - 0.22 10.5 3.3 0.24 10.3 3.3 1.1 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Ribonuc_red_lgC PF02867.15 gi|55378393|ref|YP_136243.1| - 2.1e-158 528.2 0.0 2.5e-158 527.9 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|55378393|ref|YP_136243.1| - 1.7e-25 88.8 0.0 6.5e-25 86.9 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TraG-D_C PF12696.7 gi|55378393|ref|YP_136243.1| - 0.08 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG Oxidored_molyb PF00174.19 gi|55378396|ref|YP_136245.1| - 2.5e-36 124.9 0.0 4.1e-36 124.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|55378396|ref|YP_136245.1| - 2.2e-09 37.5 0.0 5.1e-09 36.3 0.0 1.6 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.20 gi|55378396|ref|YP_136245.1| - 0.062 13.3 0.2 0.18 11.9 0.2 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat CHB_HEX_C PF03174.13 gi|55378396|ref|YP_136245.1| - 0.18 11.8 0.2 9 6.4 0.0 2.7 1 1 1 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain PAS_4 PF08448.10 gi|55378395|ref|YP_136246.1| - 3.7e-44 149.5 5.2 9.2e-17 61.3 0.3 4.5 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|55378395|ref|YP_136246.1| - 1.3e-43 147.4 1.9 2e-13 50.5 0.1 4.4 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|55378395|ref|YP_136246.1| - 6.9e-39 132.0 0.1 3.9e-14 52.7 0.1 4.4 4 0 0 4 4 4 4 PAS fold PAS PF00989.25 gi|55378395|ref|YP_136246.1| - 6.4e-36 122.8 1.8 7.4e-14 51.7 0.1 3.8 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|55378395|ref|YP_136246.1| - 2.6e-22 78.4 2.2 5.5e-08 32.7 0.1 4.8 5 0 0 5 5 5 3 PAS domain Response_reg PF00072.24 gi|55378395|ref|YP_136246.1| - 4.3e-19 68.7 0.0 1e-18 67.5 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|55378395|ref|YP_136246.1| - 5.3e-17 62.3 0.0 1.3e-16 61.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55378395|ref|YP_136246.1| - 7.7e-11 41.9 0.6 7.7e-11 41.9 0.6 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|55378395|ref|YP_136246.1| - 7.8e-06 25.9 0.1 2.2e-05 24.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|55378395|ref|YP_136246.1| - 0.14 11.8 0.0 4.7 6.8 0.0 2.8 3 0 0 3 3 3 0 UPF0242 C-terminal PAS-like domain SNARE_assoc PF09335.11 gi|55378397|ref|YP_136247.1| - 3.4e-18 66.3 5.2 8.7e-18 64.9 5.2 1.7 1 0 0 1 1 1 1 SNARE associated Golgi protein SlyX PF04102.12 gi|55378399|ref|YP_136249.1| - 0.0014 19.2 4.5 0.0034 18.0 4.5 1.7 1 0 0 1 1 1 1 SlyX DUF16 PF01519.16 gi|55378399|ref|YP_136249.1| - 0.0061 17.0 0.6 0.014 15.8 0.6 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 GrpE PF01025.19 gi|55378399|ref|YP_136249.1| - 0.081 12.6 1.0 0.23 11.1 1.0 1.7 2 0 0 2 2 2 0 GrpE DUF2218 PF09981.9 gi|55378399|ref|YP_136249.1| - 0.088 13.2 0.6 0.45 10.9 0.3 2.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2218) COG2 PF06148.11 gi|55378399|ref|YP_136249.1| - 0.13 12.4 0.9 0.22 11.6 0.9 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF5089 PF17002.5 gi|55378399|ref|YP_136249.1| - 0.3 10.9 4.9 0.48 10.3 4.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5089) HalX PF08663.10 gi|55378400|ref|YP_136250.1| - 5e-22 78.0 5.0 5e-22 78.0 5.0 1.5 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.24 gi|55378400|ref|YP_136250.1| - 5.6e-06 26.5 0.0 1.3e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain DUF496 PF04363.12 gi|55378400|ref|YP_136250.1| - 0.038 14.0 0.1 0.095 12.7 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF496) HOCHOB PF17943.1 gi|55378400|ref|YP_136250.1| - 0.11 13.2 0.3 0.61 10.8 0.1 1.9 1 1 1 2 2 2 0 Homeobox-cysteine loop-homeobox GYF PF02213.16 gi|55378401|ref|YP_136251.1| - 0.059 13.1 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 GYF domain DUF4349 PF14257.6 gi|55378403|ref|YP_136253.1| - 0.18 11.2 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Peptidase_M50 PF02163.22 gi|55378407|ref|YP_136257.1| - 3.3e-10 39.7 9.7 2.8e-05 23.5 0.3 2.5 1 1 1 2 2 2 2 Peptidase family M50 SMC_ScpA PF02616.14 gi|55378408|ref|YP_136258.1| - 1.5e-12 48.0 0.0 2e-09 37.7 0.0 2.2 2 0 0 2 2 2 2 Segregation and condensation protein ScpA XkdW PF09636.10 gi|55378408|ref|YP_136258.1| - 0.12 12.5 0.8 13 6.0 0.1 2.8 2 1 1 3 3 3 0 XkdW protein SMC_N PF02463.19 gi|55378409|ref|YP_136259.1| - 3.8e-43 147.5 70.2 5.1e-42 143.8 70.2 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|55378409|ref|YP_136259.1| - 7.3e-29 100.5 0.0 2e-28 99.1 0.0 1.8 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|55378409|ref|YP_136259.1| - 6.1e-11 42.6 58.2 7.6e-11 42.3 0.5 4.8 2 2 2 4 4 4 1 AAA ATPase domain Spc7 PF08317.11 gi|55378409|ref|YP_136259.1| - 3.1e-10 39.4 149.9 0.0018 17.2 17.0 7.9 2 2 5 7 7 7 6 Spc7 kinetochore protein AAA_21 PF13304.6 gi|55378409|ref|YP_136259.1| - 6.7e-08 32.7 13.3 3.5e-05 23.8 0.0 5.5 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|55378409|ref|YP_136259.1| - 1.1e-06 28.3 0.0 2.6e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|55378409|ref|YP_136259.1| - 1.1e-06 27.6 108.8 0.00077 18.2 23.9 5.9 3 2 1 5 5 5 2 AAA domain Fib_alpha PF08702.10 gi|55378409|ref|YP_136259.1| - 1.6e-05 25.1 81.4 5.1e-05 23.5 7.7 7.3 3 2 4 7 7 7 3 Fibrinogen alpha/beta chain family DUF745 PF05335.13 gi|55378409|ref|YP_136259.1| - 6.6e-05 22.7 9.1 6.6e-05 22.7 9.1 6.7 3 2 5 8 8 8 1 Protein of unknown function (DUF745) ATG16 PF08614.11 gi|55378409|ref|YP_136259.1| - 0.00012 22.3 157.3 0.28 11.4 12.9 8.2 3 2 4 7 7 7 4 Autophagy protein 16 (ATG16) EzrA PF06160.12 gi|55378409|ref|YP_136259.1| - 0.00017 20.0 23.1 0.00017 20.0 23.1 5.4 2 2 1 3 3 3 2 Septation ring formation regulator, EzrA DUF948 PF06103.11 gi|55378409|ref|YP_136259.1| - 0.00057 20.1 2.2 0.00057 20.1 2.2 8.9 4 3 6 10 10 9 1 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|55378409|ref|YP_136259.1| - 0.00073 19.2 124.4 0.0047 16.5 11.6 6.3 2 2 4 6 6 6 3 Mechanosensitive ion channel porin domain TMF_DNA_bd PF12329.8 gi|55378409|ref|YP_136259.1| - 0.0012 18.8 10.9 0.0012 18.8 10.9 12.0 3 2 9 13 13 11 2 TATA element modulatory factor 1 DNA binding DUF724 PF05266.14 gi|55378409|ref|YP_136259.1| - 0.0012 18.7 116.7 0.0057 16.5 11.2 8.5 2 2 7 9 9 9 3 Protein of unknown function (DUF724) Lebercilin PF15619.6 gi|55378409|ref|YP_136259.1| - 0.0068 16.1 22.4 0.0068 16.1 22.4 6.5 2 2 3 5 5 4 1 Ciliary protein causing Leber congenital amaurosis disease Baculo_PEP_C PF04513.12 gi|55378409|ref|YP_136259.1| - 0.034 14.2 45.3 0.5 10.4 0.5 8.1 3 2 5 9 9 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.6 gi|55378409|ref|YP_136259.1| - 0.035 13.5 118.6 0.12 11.6 19.3 6.9 2 2 4 6 6 6 0 Domain of unknown function (DUF4407) ABC_tran_CTD PF16326.5 gi|55378409|ref|YP_136259.1| - 0.041 14.1 179.8 0.065 13.5 11.4 13.0 5 5 8 13 13 12 0 ABC transporter C-terminal domain APG6_N PF17675.1 gi|55378409|ref|YP_136259.1| - 0.072 13.6 192.5 0.16 12.5 21.3 10.0 2 2 7 9 9 9 0 Apg6 coiled-coil region DUF3584 PF12128.8 gi|55378409|ref|YP_136259.1| - 0.13 9.8 148.6 0.0068 14.0 58.8 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|55378409|ref|YP_136259.1| - 0.24 11.0 77.4 0.44 10.1 9.1 6.0 2 2 2 4 4 4 0 Exonuclease VII, large subunit DUF1664 PF07889.12 gi|55378409|ref|YP_136259.1| - 0.3 11.1 88.8 0.38 10.8 4.0 10.1 2 2 12 14 14 14 0 Protein of unknown function (DUF1664) Fez1 PF06818.15 gi|55378409|ref|YP_136259.1| - 0.33 11.4 130.8 0.52 10.7 27.1 7.2 2 2 5 7 7 7 0 Fez1 FPP PF05911.11 gi|55378409|ref|YP_136259.1| - 0.39 8.8 119.8 0.052 11.7 12.1 5.3 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil DUF3450 PF11932.8 gi|55378409|ref|YP_136259.1| - 0.96 8.7 125.3 0.59 9.4 7.6 9.3 2 2 7 9 9 9 0 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|55378409|ref|YP_136259.1| - 0.96 9.5 159.1 0.32 11.0 13.1 8.8 3 2 5 8 8 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|55378409|ref|YP_136259.1| - 1 9.9 155.7 28 5.1 74.1 9.1 2 2 1 3 3 1 0 AAA domain MukB PF04310.12 gi|55378409|ref|YP_136259.1| - 1.5 8.6 0.0 1.5 8.6 0.0 5.3 6 1 0 6 6 5 0 MukB N-terminal Atg14 PF10186.9 gi|55378409|ref|YP_136259.1| - 2.2 7.3 99.0 0.068 12.2 8.8 6.6 2 2 5 7 7 6 0 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|55378409|ref|YP_136259.1| - 5.1 6.4 130.2 0.56 9.5 14.0 7.4 2 2 5 7 7 6 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|55378409|ref|YP_136259.1| - 7.8 6.5 84.4 0.45 10.5 3.4 9.2 3 2 7 12 12 12 0 Laminin Domain II Spc7 PF08317.11 gi|55378410|ref|YP_136260.1| - 0.0031 16.4 1.0 0.0034 16.3 0.2 1.4 1 1 0 1 1 1 1 Spc7 kinetochore protein SlyX PF04102.12 gi|55378410|ref|YP_136260.1| - 0.0058 17.2 2.6 0.011 16.3 2.6 1.7 1 1 0 1 1 1 1 SlyX FlaC_arch PF05377.11 gi|55378410|ref|YP_136260.1| - 0.0059 17.0 1.4 0.011 16.1 1.4 1.4 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) HSBP1 PF06825.12 gi|55378410|ref|YP_136260.1| - 0.014 15.3 0.3 0.14 12.1 0.0 2.1 1 1 1 2 2 2 0 Heat shock factor binding protein 1 CobT PF06213.12 gi|55378410|ref|YP_136260.1| - 0.02 14.3 7.7 0.025 14.0 7.7 1.0 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF4200 PF13863.6 gi|55378410|ref|YP_136260.1| - 0.032 14.6 0.8 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) JIP_LZII PF16471.5 gi|55378410|ref|YP_136260.1| - 0.036 14.2 1.1 0.036 14.2 1.1 1.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II bZIP_1 PF00170.21 gi|55378410|ref|YP_136260.1| - 0.038 14.1 0.2 0.064 13.4 0.2 1.4 1 0 0 1 1 1 0 bZIP transcription factor PKcGMP_CC PF16808.5 gi|55378410|ref|YP_136260.1| - 0.05 13.5 2.9 5.8 6.8 0.4 2.4 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Bcr-Abl_Oligo PF09036.10 gi|55378410|ref|YP_136260.1| - 0.079 13.0 0.4 0.16 12.0 0.4 1.5 1 1 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain CCDC53 PF10152.9 gi|55378410|ref|YP_136260.1| - 0.17 12.3 5.5 0.25 11.8 5.5 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex RP-C_C PF11800.8 gi|55378410|ref|YP_136260.1| - 0.49 10.4 3.8 0.6 10.2 3.8 1.1 1 0 0 1 1 1 0 Replication protein C C-terminal region Autophagy_N PF03986.13 gi|55378410|ref|YP_136260.1| - 4.5 7.2 8.6 5.2 7.0 8.2 1.4 1 1 0 1 1 1 0 Autophagocytosis associated protein (Atg3), N-terminal domain DICT PF10069.9 gi|55378411|ref|YP_136261.1| - 2.5e-05 24.0 0.0 3.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system GatB_N PF02934.15 gi|55378412|ref|YP_136262.1| - 1.2e-96 323.3 0.0 1.6e-96 322.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|55378412|ref|YP_136262.1| - 3.6e-40 137.3 0.0 5.6e-40 136.6 0.0 1.3 1 0 0 1 1 1 1 GatB domain Microtub_bind PF13931.6 gi|55378412|ref|YP_136262.1| - 0.19 12.1 1.5 16 5.9 0.1 2.5 2 0 0 2 2 2 0 Kinesin-associated microtubule-binding ATP_synt_H PF05493.13 gi|55378415|ref|YP_136264.1| - 3.9 8.0 6.4 0.5 10.9 1.8 1.9 2 0 0 2 2 2 0 ATP synthase subunit H Topoisom_bac PF01131.20 gi|55378414|ref|YP_136265.1| - 2.6e-118 395.6 0.0 2.6e-103 346.2 0.0 2.2 2 0 0 2 2 2 2 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|55378414|ref|YP_136265.1| - 1e-21 76.4 13.9 7.1e-14 51.3 2.1 3.1 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|55378414|ref|YP_136265.1| - 8.9e-18 64.4 0.0 2.5e-17 63.0 0.0 1.8 1 0 0 1 1 1 1 Toprim domain LAGLIDADG_3 PF14528.6 gi|55378414|ref|YP_136265.1| - 6.7e-12 45.6 0.0 2.2e-06 27.9 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain HHH_5 PF14520.6 gi|55378414|ref|YP_136265.1| - 1.5e-09 38.3 1.5 7.3e-09 36.1 0.2 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Intein_splicing PF14890.6 gi|55378414|ref|YP_136265.1| - 4e-09 36.5 0.0 9e-09 35.4 0.0 1.7 1 0 0 1 1 1 1 Intein splicing domain MarR_2 PF12802.7 gi|55378414|ref|YP_136265.1| - 1.8e-07 30.9 0.0 8.1e-06 25.6 0.1 3.5 4 0 0 4 4 2 1 MarR family HTH_11 PF08279.12 gi|55378414|ref|YP_136265.1| - 4.2e-05 23.4 0.3 0.00012 22.0 0.3 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|55378414|ref|YP_136265.1| - 0.00017 21.4 0.9 0.0029 17.5 0.1 3.3 4 0 0 4 4 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|55378414|ref|YP_136265.1| - 0.00027 20.4 0.1 0.001 18.6 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|55378414|ref|YP_136265.1| - 0.00077 19.4 2.0 0.0015 18.5 0.2 2.5 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|55378414|ref|YP_136265.1| - 0.0012 18.7 0.0 0.0033 17.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|55378414|ref|YP_136265.1| - 0.0013 19.2 0.6 0.029 14.9 0.1 3.2 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_3 PF01381.22 gi|55378414|ref|YP_136265.1| - 0.0014 18.7 0.8 0.63 10.2 0.2 2.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_20 PF12840.7 gi|55378414|ref|YP_136265.1| - 0.0019 18.2 0.0 0.013 15.6 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Cdd1 PF11731.8 gi|55378414|ref|YP_136265.1| - 0.0046 17.2 0.0 0.012 15.8 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus HTH_IclR PF09339.10 gi|55378414|ref|YP_136265.1| - 0.0072 16.1 0.3 0.041 13.7 0.2 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HRDC PF00570.23 gi|55378414|ref|YP_136265.1| - 0.012 15.6 0.3 0.66 10.0 0.0 3.1 3 0 0 3 3 3 0 HRDC domain DNA_pol_lambd_f PF10391.9 gi|55378414|ref|YP_136265.1| - 0.02 14.7 0.2 0.11 12.4 0.1 2.4 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Fe_dep_repress PF01325.19 gi|55378414|ref|YP_136265.1| - 0.03 14.5 0.0 1.4 9.2 0.0 2.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|55378414|ref|YP_136265.1| - 0.055 13.5 0.1 0.64 10.1 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix WhiA_N PF10298.9 gi|55378414|ref|YP_136265.1| - 0.06 13.4 0.0 0.33 11.0 0.0 2.2 2 0 0 2 2 2 0 WhiA N-terminal LAGLIDADG-like domain HHH PF00633.23 gi|55378414|ref|YP_136265.1| - 0.061 13.2 0.0 0.23 11.4 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif HTH_23 PF13384.6 gi|55378414|ref|YP_136265.1| - 0.065 13.1 0.1 0.9 9.4 0.1 2.8 3 0 0 3 3 2 0 Homeodomain-like domain MarR PF01047.22 gi|55378414|ref|YP_136265.1| - 0.087 12.8 0.4 0.6 10.1 0.1 2.5 3 0 0 3 3 2 0 MarR family FaeA PF04703.12 gi|55378414|ref|YP_136265.1| - 0.11 12.9 0.0 1.4 9.4 0.0 2.7 3 0 0 3 3 2 0 FaeA-like protein DUF416 PF04222.12 gi|55378414|ref|YP_136265.1| - 0.13 11.7 0.0 0.33 10.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF416) Sigma70_r4 PF04545.16 gi|55378414|ref|YP_136265.1| - 0.14 11.7 1.5 3.5 7.2 0.1 3.1 3 0 0 3 3 2 0 Sigma-70, region 4 DUF4332 PF14229.6 gi|55378414|ref|YP_136265.1| - 0.18 12.0 0.1 1.1 9.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4332) HTH_31 PF13560.6 gi|55378414|ref|YP_136265.1| - 0.2 12.0 0.1 0.2 12.0 0.1 3.5 3 0 0 3 3 2 0 Helix-turn-helix domain Lar_restr_allev PF14354.6 gi|55378414|ref|YP_136265.1| - 4.1 7.9 15.1 0.13 12.7 3.0 3.2 2 1 1 3 3 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|55378414|ref|YP_136265.1| - 7.8 6.1 9.6 7.5 6.2 0.0 3.7 3 1 0 3 3 3 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|55378416|ref|YP_136266.1| - 0.0073 16.2 0.1 0.33 11.0 0.0 2.1 2 0 0 2 2 2 1 Tryptophan RNA-binding attenuator protein inhibitory protein Prok-RING_4 PF14447.6 gi|55378416|ref|YP_136266.1| - 0.0084 16.0 0.5 0.82 9.6 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 Rad50_zn_hook PF04423.14 gi|55378416|ref|YP_136266.1| - 0.017 14.9 2.2 1.3 8.9 0.3 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-LSD1 PF06943.12 gi|55378416|ref|YP_136266.1| - 0.019 14.8 0.7 1.8 8.5 0.1 2.3 2 0 0 2 2 2 0 LSD1 zinc finger Sgf11 PF08209.11 gi|55378416|ref|YP_136266.1| - 0.025 14.2 2.5 0.22 11.1 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-H2C2_2 PF13465.6 gi|55378416|ref|YP_136266.1| - 0.026 15.0 0.1 5.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-WRNIP1_ubi PF18279.1 gi|55378416|ref|YP_136266.1| - 0.028 15.1 2.6 4.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain zf-CHCC PF10276.9 gi|55378416|ref|YP_136266.1| - 0.037 14.1 0.3 3.2 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger domain TRAF6_Z2 PF18048.1 gi|55378416|ref|YP_136266.1| - 0.041 14.0 4.6 2.6 8.2 0.2 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zinc_ribbon_9 PF14369.6 gi|55378416|ref|YP_136266.1| - 0.05 13.9 1.1 0.61 10.4 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon zf-Di19 PF05605.12 gi|55378416|ref|YP_136266.1| - 0.06 13.7 3.2 3.4 8.1 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn-C2H2_12 PF18112.1 gi|55378416|ref|YP_136266.1| - 0.069 13.6 4.7 2.4 8.7 0.6 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DUF1178 PF06676.11 gi|55378416|ref|YP_136266.1| - 0.08 13.3 2.4 2.6 8.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) zf-C6H2 PF15801.5 gi|55378416|ref|YP_136266.1| - 0.15 12.4 0.4 17 5.8 0.0 2.1 2 0 0 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding DUF2614 PF11023.8 gi|55378416|ref|YP_136266.1| - 0.27 11.3 0.7 9.3 6.4 0.0 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain Prim_Zn_Ribbon PF08273.12 gi|55378416|ref|YP_136266.1| - 0.57 10.5 3.4 3.8 7.9 0.3 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-Nse PF11789.8 gi|55378416|ref|YP_136266.1| - 0.8 9.6 3.8 24 4.8 3.8 2.2 1 1 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit UPF0547 PF10571.9 gi|55378416|ref|YP_136266.1| - 2.1 8.5 8.2 3.3 7.9 1.9 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.6 gi|55378416|ref|YP_136266.1| - 2.4 8.2 6.5 59 3.7 6.6 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Rieske PF00355.26 gi|55378417|ref|YP_136267.1| - 0.1 12.6 0.1 0.14 12.2 0.1 1.4 1 1 0 1 1 1 0 Rieske [2Fe-2S] domain PcrB PF01884.17 gi|55378419|ref|YP_136269.1| - 1.4e-57 194.8 1.6 1.7e-57 194.5 1.6 1.0 1 0 0 1 1 1 1 PcrB family Sun2_CC2 PF18580.1 gi|55378419|ref|YP_136269.1| - 0.14 12.4 2.6 0.33 11.2 0.3 2.3 2 0 0 2 2 2 0 SUN2 coiled coil domain 2 AA_permease_2 PF13520.6 gi|55378420|ref|YP_136270.1| - 3.1e-45 154.8 37.8 4e-45 154.4 37.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|55378420|ref|YP_136270.1| - 1e-43 149.7 38.1 1.5e-43 149.1 38.1 1.2 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|55378420|ref|YP_136270.1| - 4.3e-05 24.1 0.6 0.00012 22.6 0.6 1.8 1 0 0 1 1 1 1 Universal stress protein family AA_permease_C PF13906.6 gi|55378420|ref|YP_136270.1| - 0.0016 18.4 4.4 0.0016 18.4 4.4 2.6 2 0 0 2 2 2 1 C-terminus of AA_permease TrkA_N PF02254.18 gi|55378421|ref|YP_136271.1| - 3.3e-11 43.5 0.3 4.3e-11 43.1 0.3 1.2 1 0 0 1 1 1 1 TrkA-N domain HTH_24 PF13412.6 gi|55378422|ref|YP_136272.1| - 3.1e-12 45.9 0.3 4.5e-12 45.3 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55378422|ref|YP_136272.1| - 7.9e-12 44.8 1.4 1.5e-11 43.9 1.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|55378422|ref|YP_136272.1| - 7.5e-10 38.6 0.0 1.5e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|55378422|ref|YP_136272.1| - 1.6e-06 28.1 0.0 3.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|55378422|ref|YP_136272.1| - 2.4e-05 24.0 0.1 6.9e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|55378422|ref|YP_136272.1| - 5.3e-05 23.3 0.0 0.0001 22.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|55378422|ref|YP_136272.1| - 0.00022 21.0 0.0 0.00038 20.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55378422|ref|YP_136272.1| - 0.00049 19.9 0.1 0.00069 19.4 0.1 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|55378422|ref|YP_136272.1| - 0.00054 20.3 0.1 0.0013 19.0 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|55378422|ref|YP_136272.1| - 0.0014 18.4 0.1 0.0026 17.5 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|55378422|ref|YP_136272.1| - 0.0021 17.7 0.1 0.0038 16.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|55378422|ref|YP_136272.1| - 0.0043 17.1 0.6 0.023 14.8 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|55378422|ref|YP_136272.1| - 0.005 16.7 0.0 0.0079 16.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.6 gi|55378422|ref|YP_136272.1| - 0.0069 16.2 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_Mga PF08280.11 gi|55378422|ref|YP_136272.1| - 0.007 16.4 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|55378422|ref|YP_136272.1| - 0.0071 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|55378422|ref|YP_136272.1| - 0.0084 16.1 0.0 0.025 14.5 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GerE PF00196.19 gi|55378422|ref|YP_136272.1| - 0.014 14.9 0.1 0.025 14.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FUR PF01475.19 gi|55378422|ref|YP_136272.1| - 0.018 15.2 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.6 gi|55378422|ref|YP_136272.1| - 0.018 15.0 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|55378422|ref|YP_136272.1| - 0.022 14.1 0.2 0.043 13.2 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 GntR PF00392.21 gi|55378422|ref|YP_136272.1| - 0.041 13.5 0.1 0.089 12.5 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|55378422|ref|YP_136272.1| - 0.042 13.6 0.2 0.071 12.9 0.2 1.4 1 0 0 1 1 1 0 HTH DNA binding domain TrmB PF01978.19 gi|55378422|ref|YP_136272.1| - 0.045 13.6 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_Tc3_2 PF01498.18 gi|55378422|ref|YP_136272.1| - 0.045 14.0 0.3 0.077 13.3 0.3 1.3 1 0 0 1 1 1 0 Transposase HrcA_DNA-bdg PF03444.15 gi|55378422|ref|YP_136272.1| - 0.069 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_CodY PF08222.11 gi|55378422|ref|YP_136272.1| - 0.076 12.6 0.6 0.15 11.6 0.2 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain RPA_C PF08784.11 gi|55378422|ref|YP_136272.1| - 0.076 13.7 0.1 0.34 11.6 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal Sigma70_r3 PF04539.16 gi|55378422|ref|YP_136272.1| - 0.087 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_12 PF08461.10 gi|55378422|ref|YP_136272.1| - 0.088 12.8 0.2 0.24 11.4 0.1 1.8 2 0 0 2 2 1 0 Ribonuclease R winged-helix domain HTH_1 PF00126.27 gi|55378422|ref|YP_136272.1| - 0.11 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Put_DNA-bind_N PF06971.13 gi|55378422|ref|YP_136272.1| - 0.14 12.2 0.1 0.27 11.3 0.1 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_38 PF13936.6 gi|55378422|ref|YP_136272.1| - 0.2 11.5 0.3 0.2 11.5 0.3 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|55378424|ref|YP_136274.1| - 3.1e-25 89.3 0.0 4.2e-25 88.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378424|ref|YP_136274.1| - 1.6e-13 51.1 0.1 2e-09 37.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|55378424|ref|YP_136274.1| - 0.019 15.4 0.1 0.038 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|55378424|ref|YP_136274.1| - 0.039 13.8 0.1 0.059 13.3 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|55378424|ref|YP_136274.1| - 0.068 13.7 0.1 0.1 13.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|55378424|ref|YP_136274.1| - 0.074 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|55378424|ref|YP_136274.1| - 0.1 12.8 0.0 0.48 10.7 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.17 gi|55378424|ref|YP_136274.1| - 0.16 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane_2 PF12679.7 gi|55378425|ref|YP_136275.1| - 1.7e-28 99.7 17.1 2.7e-27 95.8 14.5 2.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|55378425|ref|YP_136275.1| - 4.9e-09 35.8 12.4 5.7e-09 35.5 12.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|55378425|ref|YP_136275.1| - 9.6e-07 28.9 8.4 3.5e-06 27.1 8.6 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|55378425|ref|YP_136275.1| - 2.5e-06 27.1 12.1 3.5e-06 26.6 12.1 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|55378425|ref|YP_136275.1| - 0.00013 21.6 6.6 0.00019 21.1 6.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein tRNA-synt_2 PF00152.20 gi|55378426|ref|YP_136276.1| - 3.5e-85 285.9 0.0 4.1e-85 285.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|55378426|ref|YP_136276.1| - 2.1e-15 56.5 0.3 3.5e-15 55.7 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|55378426|ref|YP_136276.1| - 0.005 16.4 0.2 0.073 12.5 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|55378426|ref|YP_136276.1| - 0.075 13.1 0.1 0.25 11.4 0.1 1.9 2 0 0 2 2 2 0 Bacterial OB fold (BOF) protein DUF3742 PF12553.8 gi|55378427|ref|YP_136277.1| - 0.11 12.6 0.9 0.12 12.5 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) Bac_rhodopsin PF01036.18 gi|55378428|ref|YP_136278.1| - 2.5e-55 187.5 20.9 2.9e-55 187.3 20.9 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Aldo_ket_red PF00248.21 gi|55378429|ref|YP_136279.1| - 3.8e-48 164.2 0.0 7.6e-46 156.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Methyltransf_28 PF02636.17 gi|55378429|ref|YP_136279.1| - 0.059 13.0 0.0 0.077 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HTH_20 PF12840.7 gi|55378430|ref|YP_136280.1| - 0.047 13.7 0.0 0.18 11.9 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain PAS_3 PF08447.12 gi|55378431|ref|YP_136281.1| - 1.7e-35 121.2 0.0 1.8e-25 89.0 0.4 2.6 2 0 0 2 2 2 2 PAS fold BAT PF15915.5 gi|55378431|ref|YP_136281.1| - 9.6e-28 97.0 2.0 9.6e-28 97.0 2.0 3.0 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|55378431|ref|YP_136281.1| - 2.3e-20 72.9 7.8 4.6e-13 49.4 0.1 4.2 4 0 0 4 4 4 3 PAS fold HTH_10 PF04967.12 gi|55378431|ref|YP_136281.1| - 1.4e-19 69.6 0.1 3.5e-19 68.3 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|55378431|ref|YP_136281.1| - 1.3e-18 67.1 0.0 4.4e-10 39.7 0.0 3.6 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|55378431|ref|YP_136281.1| - 5e-16 58.7 0.0 1e-11 44.8 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|55378431|ref|YP_136281.1| - 1.4e-11 44.9 0.3 5.2e-11 43.0 0.1 2.2 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|55378431|ref|YP_136281.1| - 4.8e-05 23.3 0.0 0.00033 20.6 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.6 gi|55378431|ref|YP_136281.1| - 8e-05 22.7 0.0 0.00027 21.0 0.0 1.9 2 0 0 2 2 1 1 PAS domain GAF_3 PF13492.6 gi|55378431|ref|YP_136281.1| - 0.011 16.1 0.0 0.035 14.4 0.0 2.0 1 0 0 1 1 1 0 GAF domain Sigma70_r4 PF04545.16 gi|55378431|ref|YP_136281.1| - 0.013 15.0 0.1 0.12 11.9 0.1 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_7 PF12860.7 gi|55378431|ref|YP_136281.1| - 0.033 14.3 0.0 0.36 11.0 0.0 2.8 2 0 0 2 2 2 0 PAS fold GAF PF01590.26 gi|55378431|ref|YP_136281.1| - 0.035 14.7 0.0 0.15 12.7 0.0 2.1 1 0 0 1 1 1 0 GAF domain HTH_20 PF12840.7 gi|55378431|ref|YP_136281.1| - 0.053 13.6 1.3 0.11 12.6 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2238 PF09997.9 gi|55378432|ref|YP_136282.1| - 0.0014 18.4 3.8 0.032 14.0 3.8 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) TPPK_C PF12555.8 gi|55378434|ref|YP_136283.1| - 1.4 9.0 0.1 1.4 9.0 0.1 4.3 4 1 0 4 4 4 0 Thiamine pyrophosphokinase C terminal O-antigen_lig PF13425.6 gi|55378434|ref|YP_136283.1| - 3 6.5 4.9 3.7 6.2 4.9 1.3 1 0 0 1 1 1 0 O-antigen ligase like membrane protein YdjM PF04307.14 gi|55378433|ref|YP_136284.1| - 0.0003 20.1 18.7 0.0019 17.6 16.9 2.6 1 1 1 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase Pcc1 PF09341.10 gi|55378435|ref|YP_136285.1| - 8.5e-09 35.4 0.2 9.4e-09 35.3 0.2 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|55378436|ref|YP_136286.1| - 1.8e-10 40.3 6.3 2.1e-10 40.1 6.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|55378436|ref|YP_136286.1| - 6.3e-05 22.2 0.4 0.0046 16.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|55378436|ref|YP_136286.1| - 0.0011 19.0 0.3 0.0011 19.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|55378436|ref|YP_136286.1| - 0.0016 18.0 1.6 0.33 10.6 0.3 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|55378436|ref|YP_136286.1| - 0.0052 16.7 4.6 0.1 12.6 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.9 gi|55378436|ref|YP_136286.1| - 0.0052 16.8 0.4 0.0092 16.0 0.4 1.4 1 0 0 1 1 1 1 Zinc-finger domain A2L_zn_ribbon PF08792.10 gi|55378436|ref|YP_136286.1| - 0.0054 16.4 0.8 0.25 11.1 2.2 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain DZR PF12773.7 gi|55378436|ref|YP_136286.1| - 0.009 16.0 0.9 0.019 14.9 0.9 1.6 1 1 0 1 1 1 1 Double zinc ribbon YacG PF03884.14 gi|55378436|ref|YP_136286.1| - 0.011 15.5 0.3 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zinc_ribbon_2 PF13240.6 gi|55378436|ref|YP_136286.1| - 0.013 15.2 2.1 0.17 11.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|55378436|ref|YP_136286.1| - 0.019 15.0 0.2 0.023 14.7 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons RNHCP PF12647.7 gi|55378436|ref|YP_136286.1| - 0.021 14.8 0.2 0.023 14.7 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|55378436|ref|YP_136286.1| - 0.027 14.0 1.9 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.6 gi|55378436|ref|YP_136286.1| - 0.032 14.6 0.6 0.27 11.6 0.0 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.6 gi|55378436|ref|YP_136286.1| - 0.041 13.8 0.7 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF951 PF06107.11 gi|55378436|ref|YP_136286.1| - 0.05 13.5 1.0 3.8 7.5 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.12 gi|55378436|ref|YP_136286.1| - 0.057 13.7 0.3 0.63 10.4 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|55378436|ref|YP_136286.1| - 0.06 12.9 4.0 0.11 12.1 4.0 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|55378436|ref|YP_136286.1| - 0.076 13.0 0.1 0.094 12.7 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Mu-like_Com PF10122.9 gi|55378436|ref|YP_136286.1| - 0.12 11.9 2.6 0.47 10.0 2.6 1.8 1 1 0 1 1 1 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.11 gi|55378436|ref|YP_136286.1| - 0.12 12.3 2.5 0.21 11.6 2.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|55378436|ref|YP_136286.1| - 0.14 12.5 1.1 0.5 10.7 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain Thioredoxin_4 PF13462.6 gi|55378436|ref|YP_136286.1| - 0.16 12.1 1.8 0.2 11.8 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin CpXC PF14353.6 gi|55378436|ref|YP_136286.1| - 0.17 12.0 1.3 0.55 10.3 0.3 1.9 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|55378436|ref|YP_136286.1| - 0.17 12.0 4.0 0.43 10.7 4.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|55378436|ref|YP_136286.1| - 0.37 10.8 5.5 15 5.6 5.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|55378437|ref|YP_136287.1| - 2.7e-31 107.5 1.2 3.2e-31 107.2 1.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|55378437|ref|YP_136287.1| - 0.0021 18.0 1.1 0.0021 18.0 1.1 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|55378437|ref|YP_136287.1| - 0.0027 18.1 0.7 0.11 12.9 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Rep_fac-A_C PF08646.10 gi|55378437|ref|YP_136287.1| - 0.016 14.9 0.3 0.021 14.6 0.3 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain DUF1610 PF07754.11 gi|55378437|ref|YP_136287.1| - 0.019 15.0 1.3 0.035 14.1 1.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.10 gi|55378437|ref|YP_136287.1| - 0.033 14.3 0.9 0.14 12.3 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|55378437|ref|YP_136287.1| - 0.11 12.0 2.4 0.41 10.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55378437|ref|YP_136287.1| - 0.12 12.3 0.8 0.2 11.6 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|55378437|ref|YP_136287.1| - 0.21 11.6 3.3 3 8.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Prim_Zn_Ribbon PF08273.12 gi|55378437|ref|YP_136287.1| - 0.48 10.8 8.2 1.9 8.8 8.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 gi|55378437|ref|YP_136287.1| - 0.65 9.8 4.1 1.3 8.9 0.5 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|55378437|ref|YP_136287.1| - 2.2 8.9 3.9 6.3 7.5 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2103 PF09876.9 gi|55378439|ref|YP_136289.1| - 2.5e-39 133.2 0.3 5.2e-39 132.2 0.3 1.5 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Candida_ALS PF05792.13 gi|55378439|ref|YP_136289.1| - 0.062 13.9 4.6 0.14 12.8 4.6 1.6 1 0 0 1 1 1 0 Candida agglutinin-like (ALS) acVLRF1 PF18859.1 gi|55378439|ref|YP_136289.1| - 0.14 12.5 11.7 0.1 12.9 1.4 2.8 2 2 1 3 3 3 0 Actinobacteria/chloroflexi VLRF1 release factor Auto_anti-p27 PF06677.12 gi|55378439|ref|YP_136289.1| - 1.2 9.3 2.8 2 8.6 2.8 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GHMP_kinases_N PF00288.26 gi|55378440|ref|YP_136290.1| - 6.4e-07 29.5 4.6 6.4e-07 29.5 4.6 2.3 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|55378440|ref|YP_136290.1| - 0.00065 20.0 0.8 0.018 15.4 0.0 2.9 3 0 0 3 3 3 1 GHMP kinases C terminal UPF0175 PF03683.13 gi|55378441|ref|YP_136291.1| - 6e-10 38.7 1.9 8.5e-10 38.2 1.9 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|55378441|ref|YP_136291.1| - 0.013 15.4 1.3 0.013 15.4 1.3 2.5 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HTH_psq PF05225.16 gi|55378441|ref|YP_136291.1| - 0.1 12.4 1.6 0.38 10.5 0.5 2.1 1 1 1 2 2 2 0 helix-turn-helix, Psq domain NYN_YacP PF05991.11 gi|55378442|ref|YP_136292.1| - 0.023 14.7 0.1 0.031 14.2 0.1 1.2 1 0 0 1 1 1 0 YacP-like NYN domain PIN_4 PF13638.6 gi|55378442|ref|YP_136292.1| - 0.027 14.8 0.3 1.1 9.6 0.3 2.2 1 1 0 1 1 1 0 PIN domain AA_kinase PF00696.28 gi|55378442|ref|YP_136292.1| - 0.038 13.6 0.2 0.052 13.1 0.2 1.2 1 0 0 1 1 1 0 Amino acid kinase family OrfB_IS605 PF01385.19 gi|55378443|ref|YP_136293.1| - 2.7e-32 111.5 0.2 5.6e-32 110.5 0.2 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|55378443|ref|YP_136293.1| - 3.2e-20 71.8 0.6 7.6e-20 70.6 0.6 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2408 PF10303.9 gi|55378443|ref|YP_136293.1| - 0.023 15.3 0.0 8.1 7.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) RPA_interact_C PF14768.6 gi|55378443|ref|YP_136293.1| - 0.068 13.7 0.5 0.16 12.6 0.5 1.6 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF2985 PF11204.8 gi|55378444|ref|YP_136294.1| - 0.23 11.7 0.0 0.32 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2985) Prefoldin_2 PF01920.20 gi|55378445|ref|YP_136295.1| - 3.5e-27 94.4 23.3 3.9e-27 94.3 23.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit CLZ PF16526.5 gi|55378445|ref|YP_136295.1| - 0.00045 20.5 4.0 0.00045 20.5 4.0 2.3 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FlaC_arch PF05377.11 gi|55378445|ref|YP_136295.1| - 0.00047 20.5 5.9 0.00047 20.5 5.9 2.4 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|55378445|ref|YP_136295.1| - 0.0018 18.5 10.5 0.0024 18.1 10.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) XhlA PF10779.9 gi|55378445|ref|YP_136295.1| - 0.0031 17.7 1.4 0.0031 17.7 1.4 2.3 2 0 0 2 2 2 1 Haemolysin XhlA TraF_2 PF13729.6 gi|55378445|ref|YP_136295.1| - 0.0056 16.1 6.6 0.075 12.4 0.2 2.0 1 1 1 2 2 2 1 F plasmid transfer operon, TraF, protein ERM PF00769.19 gi|55378445|ref|YP_136295.1| - 0.0062 16.4 18.7 0.0099 15.7 18.7 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family DUF3584 PF12128.8 gi|55378445|ref|YP_136295.1| - 0.0068 14.0 11.6 0.0082 13.7 11.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) ALIX_LYPXL_bnd PF13949.6 gi|55378445|ref|YP_136295.1| - 0.0085 15.4 9.8 0.011 15.0 9.8 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV BLOC1_2 PF10046.9 gi|55378445|ref|YP_136295.1| - 0.014 15.7 11.9 0.26 11.6 1.7 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.12 gi|55378445|ref|YP_136295.1| - 0.018 15.1 24.0 0.031 14.3 24.0 1.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|55378445|ref|YP_136295.1| - 0.02 15.5 0.1 0.02 15.5 0.1 2.3 2 0 0 2 2 2 0 SlyX DUF724 PF05266.14 gi|55378445|ref|YP_136295.1| - 0.022 14.6 12.2 0.03 14.1 12.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Leu_zip PF15294.6 gi|55378445|ref|YP_136295.1| - 0.022 14.3 13.1 0.027 14.0 13.1 1.0 1 0 0 1 1 1 0 Leucine zipper PRP1_N PF06424.12 gi|55378445|ref|YP_136295.1| - 0.025 15.0 7.0 0.033 14.6 7.0 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Fib_alpha PF08702.10 gi|55378445|ref|YP_136295.1| - 0.028 14.6 9.1 0.23 11.7 9.1 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF4988 PF16378.5 gi|55378445|ref|YP_136295.1| - 0.031 14.0 0.9 0.031 14.0 0.9 1.9 2 0 0 2 2 2 0 Domain of unknown function Prefoldin PF02996.17 gi|55378445|ref|YP_136295.1| - 0.075 12.9 19.3 3.4 7.6 19.2 2.5 1 1 0 1 1 1 0 Prefoldin subunit DUF1826 PF08856.11 gi|55378445|ref|YP_136295.1| - 0.078 12.9 2.5 0.088 12.7 1.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1826) EzrA PF06160.12 gi|55378445|ref|YP_136295.1| - 0.12 10.5 16.2 0.18 10.0 16.2 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Glyco_hyd_65N_2 PF14498.6 gi|55378445|ref|YP_136295.1| - 0.12 12.2 1.9 0.13 12.1 1.2 1.4 1 1 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain BRI3BP PF14965.6 gi|55378445|ref|YP_136295.1| - 0.13 11.8 0.3 0.18 11.3 0.3 1.3 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Sigma70_ner PF04546.13 gi|55378445|ref|YP_136295.1| - 0.15 11.9 15.6 0.052 13.4 2.9 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region Cep57_CLD PF14073.6 gi|55378445|ref|YP_136295.1| - 0.18 11.8 16.7 1.3 9.0 2.7 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 DUF4407 PF14362.6 gi|55378445|ref|YP_136295.1| - 0.19 11.1 11.9 0.64 9.3 0.4 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) RasGAP_C PF03836.15 gi|55378445|ref|YP_136295.1| - 0.21 11.7 7.3 3.6 7.7 0.3 2.1 2 0 0 2 2 2 0 RasGAP C-terminus Baculo_PEP_C PF04513.12 gi|55378445|ref|YP_136295.1| - 0.23 11.5 9.9 0.4 10.7 9.9 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Exonuc_VII_L PF02601.15 gi|55378445|ref|YP_136295.1| - 0.26 10.8 6.5 0.33 10.5 6.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit GCN5L1 PF06320.13 gi|55378445|ref|YP_136295.1| - 0.27 11.4 14.1 0.38 10.9 3.7 2.1 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) FAM184 PF15665.5 gi|55378445|ref|YP_136295.1| - 0.28 10.9 18.7 0.38 10.5 18.7 1.1 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B CENP-F_leu_zip PF10473.9 gi|55378445|ref|YP_136295.1| - 0.32 11.0 23.4 0.98 9.4 6.4 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 WXG100 PF06013.12 gi|55378445|ref|YP_136295.1| - 0.33 11.2 15.1 1.9 8.8 5.9 2.9 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Seryl_tRNA_N PF02403.22 gi|55378445|ref|YP_136295.1| - 0.38 11.0 16.0 0.38 11.0 2.5 2.1 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ZapB PF06005.12 gi|55378445|ref|YP_136295.1| - 0.43 11.1 19.8 0.52 10.8 6.4 2.2 2 0 0 2 2 2 0 Cell division protein ZapB Spc24 PF08286.11 gi|55378445|ref|YP_136295.1| - 0.43 10.8 20.7 0.52 10.6 5.6 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Laminin_I PF06008.14 gi|55378445|ref|YP_136295.1| - 0.51 10.0 19.0 0.8 9.4 4.3 2.1 1 1 0 2 2 2 0 Laminin Domain I ING PF12998.7 gi|55378445|ref|YP_136295.1| - 0.68 10.6 10.2 2.1 9.0 9.8 2.1 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding MutS_III PF05192.18 gi|55378445|ref|YP_136295.1| - 0.71 10.1 6.0 0.91 9.7 6.0 1.1 1 0 0 1 1 1 0 MutS domain III FUSC PF04632.12 gi|55378445|ref|YP_136295.1| - 0.86 8.1 4.9 1.2 7.6 4.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Laminin_II PF06009.12 gi|55378445|ref|YP_136295.1| - 1.1 9.3 11.8 2 8.4 11.8 1.5 1 1 0 1 1 1 0 Laminin Domain II DUF1664 PF07889.12 gi|55378445|ref|YP_136295.1| - 1.2 9.2 12.3 0.59 10.2 2.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|55378445|ref|YP_136295.1| - 1.8 9.1 10.3 2.2 8.8 1.3 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein LMBR1 PF04791.16 gi|55378445|ref|YP_136295.1| - 2.1 7.1 6.8 2.7 6.8 6.8 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein HemX PF04375.14 gi|55378445|ref|YP_136295.1| - 2.2 7.5 22.3 27 3.9 22.3 1.9 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase bZIP_1 PF00170.21 gi|55378445|ref|YP_136295.1| - 2.2 8.5 15.0 0.065 13.3 3.5 2.2 2 0 0 2 2 2 0 bZIP transcription factor Snapin_Pallidin PF14712.6 gi|55378445|ref|YP_136295.1| - 2.4 8.6 14.5 2.7 8.5 2.9 2.3 2 0 0 2 2 2 0 Snapin/Pallidin DUF4164 PF13747.6 gi|55378445|ref|YP_136295.1| - 2.5 8.5 13.7 0.12 12.7 1.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Fzo_mitofusin PF04799.13 gi|55378445|ref|YP_136295.1| - 2.5 7.6 14.1 3.3 7.2 3.9 2.1 1 1 1 2 2 2 0 fzo-like conserved region APG6_N PF17675.1 gi|55378445|ref|YP_136295.1| - 2.6 8.6 31.7 2.9 8.4 13.0 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Tropomyosin_1 PF12718.7 gi|55378445|ref|YP_136295.1| - 3 8.0 24.8 8.8 6.5 24.2 1.8 1 1 0 1 1 1 0 Tropomyosin like eIF3_N PF09440.10 gi|55378445|ref|YP_136295.1| - 3 8.3 15.7 0.38 11.2 4.4 2.0 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain DUF4446 PF14584.6 gi|55378445|ref|YP_136295.1| - 3.4 7.6 11.5 0.85 9.6 2.5 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) Spc7 PF08317.11 gi|55378445|ref|YP_136295.1| - 3.8 6.3 22.0 4.2 6.2 7.3 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein Com_YlbF PF06133.11 gi|55378445|ref|YP_136295.1| - 3.8 8.2 23.2 0.42 11.3 9.7 2.1 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA DUF3376 PF11856.8 gi|55378445|ref|YP_136295.1| - 4 6.3 8.0 4.8 6.1 8.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3376) Vps51 PF08700.11 gi|55378445|ref|YP_136295.1| - 4 7.6 12.6 0.55 10.4 1.2 2.2 2 0 0 2 2 2 0 Vps51/Vps67 DUF3450 PF11932.8 gi|55378445|ref|YP_136295.1| - 4.2 6.6 23.7 1.6 8.0 6.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) GIT_CC PF16559.5 gi|55378445|ref|YP_136295.1| - 4.4 7.3 17.0 0.099 12.5 3.0 2.5 2 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Sec34 PF04136.15 gi|55378445|ref|YP_136295.1| - 5.6 6.8 14.7 1.9 8.3 2.6 2.1 1 1 1 2 2 2 0 Sec34-like family OmpH PF03938.14 gi|55378445|ref|YP_136295.1| - 6.2 7.2 28.8 4.2e+03 -2.0 29.0 2.1 1 1 0 1 1 0 0 Outer membrane protein (OmpH-like) Occludin_ELL PF07303.13 gi|55378445|ref|YP_136295.1| - 6.2 7.6 12.0 8.2 7.2 2.3 2.1 1 1 1 2 2 2 0 Occludin homology domain DUF2408 PF10303.9 gi|55378445|ref|YP_136295.1| - 7.6 7.1 11.4 19 5.8 11.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Herpes_UL6 PF01763.16 gi|55378445|ref|YP_136295.1| - 8 4.8 13.7 3.8 5.9 2.9 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like DUF4795 PF16043.5 gi|55378445|ref|YP_136295.1| - 8.4 5.9 19.6 46 3.5 19.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) HMMR_N PF15905.5 gi|55378445|ref|YP_136295.1| - 8.8 5.7 23.7 18 4.7 23.7 1.4 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal FapA PF03961.13 gi|55378445|ref|YP_136295.1| - 9.7 4.7 11.2 19 3.7 11.2 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF3194 PF11419.8 gi|55378446|ref|YP_136296.1| - 0.0036 17.6 3.6 0.0048 17.2 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) MucB_RseB_C PF17188.4 gi|55378446|ref|YP_136296.1| - 0.13 12.6 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 MucB/RseB C-terminal domain PepSY_TM PF03929.16 gi|55378448|ref|YP_136298.1| - 0.012 15.3 0.2 0.018 14.7 0.1 1.3 1 1 0 1 1 1 0 PepSY-associated TM region DNase-RNase PF02577.14 gi|55378449|ref|YP_136299.1| - 4e-38 130.0 0.0 4.4e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HAD_2 PF13419.6 gi|55378450|ref|YP_136300.1| - 1.4e-19 70.9 0.0 1.9e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55378450|ref|YP_136300.1| - 1.9e-09 37.5 0.0 3.6e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|55378450|ref|YP_136300.1| - 5.3e-08 33.4 0.0 6.2e-07 29.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55378450|ref|YP_136300.1| - 0.011 16.1 0.8 0.025 15.0 0.8 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase BAT PF15915.5 gi|55378451|ref|YP_136301.1| - 1.4e-29 103.0 10.4 1.4e-29 103.0 10.4 3.4 4 0 0 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|55378451|ref|YP_136301.1| - 3.8e-19 68.2 0.0 7.9e-19 67.2 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|55378451|ref|YP_136301.1| - 2.8e-18 66.5 5.3 1e-14 55.0 0.5 2.7 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.7 gi|55378451|ref|YP_136301.1| - 1.5e-17 63.8 0.0 4.1e-08 33.4 0.1 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|55378451|ref|YP_136301.1| - 4.4e-14 52.4 0.6 9.4e-09 35.3 0.1 3.3 3 0 0 3 3 3 2 PAS fold PAS_4 PF08448.10 gi|55378451|ref|YP_136301.1| - 3e-09 37.1 11.0 1.9e-05 24.8 0.1 4.6 5 1 0 5 5 4 2 PAS fold PAS_8 PF13188.7 gi|55378451|ref|YP_136301.1| - 1.8e-08 34.2 0.1 0.0028 17.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 gi|55378451|ref|YP_136301.1| - 2.1e-05 24.9 0.4 0.00049 20.5 0.1 2.6 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|55378451|ref|YP_136301.1| - 0.0014 18.1 0.0 0.0044 16.5 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|55378451|ref|YP_136301.1| - 0.0014 18.4 0.0 0.0039 17.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PAS_3 PF08447.12 gi|55378451|ref|YP_136301.1| - 0.011 16.0 0.0 0.21 11.9 0.0 2.8 2 0 0 2 2 2 0 PAS fold GAF PF01590.26 gi|55378451|ref|YP_136301.1| - 0.017 15.7 0.1 0.092 13.4 0.0 2.3 2 0 0 2 2 2 0 GAF domain GerE PF00196.19 gi|55378451|ref|YP_136301.1| - 0.022 14.3 0.0 0.11 12.1 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|55378451|ref|YP_136301.1| - 0.035 13.7 0.0 0.081 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|55378451|ref|YP_136301.1| - 0.061 13.0 0.3 0.34 10.6 0.0 2.5 2 1 0 2 2 2 0 Sigma-70, region 4 Exonuc_VII_S PF02609.16 gi|55378451|ref|YP_136301.1| - 0.08 13.0 0.5 0.57 10.3 0.1 2.5 2 0 0 2 2 2 0 Exonuclease VII small subunit L31 PF09784.9 gi|55378451|ref|YP_136301.1| - 0.16 12.4 0.9 18 5.8 0.5 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 DUF4078 PF13300.6 gi|55378451|ref|YP_136301.1| - 0.26 11.6 8.5 0.06 13.7 3.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4078) MAT1 PF06391.13 gi|55378451|ref|YP_136301.1| - 0.35 10.7 5.2 0.45 10.3 0.2 2.4 2 0 0 2 2 2 0 CDK-activating kinase assembly factor MAT1 DASH_Duo1 PF08651.10 gi|55378451|ref|YP_136301.1| - 3.3 7.5 4.9 13 5.6 0.3 3.2 3 0 0 3 3 3 0 DASH complex subunit Duo1 HalOD1 PF18545.1 gi|55378452|ref|YP_136302.1| - 1.1e-22 80.1 0.2 1.2e-22 79.9 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Terpene_synth_C PF03936.16 gi|55378453|ref|YP_136303.1| - 0.0035 16.7 0.0 0.017 14.5 0.0 1.8 1 1 0 1 1 1 1 Terpene synthase family, metal binding domain HMGL-like PF00682.19 gi|55378454|ref|YP_136304.1| - 1.9e-65 221.1 0.4 4.1e-65 220.0 0.4 1.6 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|55378454|ref|YP_136304.1| - 7.4e-30 103.6 3.4 1.7e-29 102.4 3.4 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain GDPD_2 PF13653.6 gi|55378454|ref|YP_136304.1| - 0.045 14.2 0.3 20 5.8 0.0 3.5 3 0 0 3 3 3 0 Glycerophosphoryl diester phosphodiesterase family F_bP_aldolase PF01116.20 gi|55378454|ref|YP_136304.1| - 0.047 13.2 0.2 0.33 10.4 0.0 2.1 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II DUF192 PF02643.15 gi|55378456|ref|YP_136305.1| - 1.6e-21 76.3 0.0 1.9e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HNH PF01844.23 gi|55378455|ref|YP_136306.1| - 0.032 14.4 1.9 0.066 13.4 1.9 1.6 1 0 0 1 1 1 0 HNH endonuclease RecA_dep_nuc PF16786.5 gi|55378455|ref|YP_136306.1| - 0.056 13.6 0.4 0.094 12.9 0.4 1.4 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease HisKA_4TM PF16926.5 gi|55378457|ref|YP_136307.1| - 1.2e-11 44.5 0.5 2e-10 40.5 0.4 2.2 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|55378457|ref|YP_136307.1| - 1.5e-05 25.4 0.0 2.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|55378457|ref|YP_136307.1| - 2e-05 24.4 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|55378457|ref|YP_136307.1| - 0.0025 17.8 0.2 0.0046 17.0 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DPBB_1 PF03330.18 gi|55378457|ref|YP_136307.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Lytic transglycolase HATPase_c_2 PF13581.6 gi|55378457|ref|YP_136307.1| - 0.12 12.3 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GATase PF00117.28 gi|55378458|ref|YP_136308.1| - 4.8e-36 124.3 0.0 5.4e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|55378458|ref|YP_136308.1| - 1.1e-14 54.7 1.7 7.6e-13 48.7 0.3 2.9 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|55378458|ref|YP_136308.1| - 0.15 11.7 0.6 2.3 7.8 0.6 2.1 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF2070 PF09843.9 gi|55378459|ref|YP_136309.1| - 1.3e-211 703.8 0.1 1.5e-211 703.6 0.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) PsaM PF07465.13 gi|55378459|ref|YP_136309.1| - 2 8.2 12.0 3.3 7.5 0.6 3.7 3 0 0 3 3 3 0 Photosystem I protein M (PsaM) DUF3087 PF11286.8 gi|55378459|ref|YP_136309.1| - 5.9 6.3 10.3 0.63 9.5 4.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) AAA_3 PF07726.11 gi|55378460|ref|YP_136310.1| - 2.4e-65 218.3 0.1 4.3e-65 217.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|55378460|ref|YP_136310.1| - 1e-18 66.9 1.2 2.3e-18 65.8 1.2 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|55378460|ref|YP_136310.1| - 1.1e-15 57.8 0.0 4.7e-15 55.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|55378460|ref|YP_136310.1| - 4.1e-07 30.5 0.0 1e-06 29.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|55378460|ref|YP_136310.1| - 8.7e-05 22.3 0.0 0.0023 17.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55378460|ref|YP_136310.1| - 0.00078 19.2 0.1 0.012 15.3 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|55378460|ref|YP_136310.1| - 0.00091 18.7 0.1 1.1 8.5 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|55378460|ref|YP_136310.1| - 0.0067 15.5 0.0 0.012 14.7 0.0 1.5 1 1 0 1 1 1 1 MCM P-loop domain DUF3071 PF11268.8 gi|55378460|ref|YP_136310.1| - 0.057 13.5 0.3 0.13 12.3 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3071) AAA_2 PF07724.14 gi|55378460|ref|YP_136310.1| - 0.076 13.1 0.0 0.41 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) SsgA PF04686.12 gi|55378460|ref|YP_136310.1| - 0.076 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Streptomyces sporulation and cell division protein, SsgA GtrA PF04138.14 gi|55378461|ref|YP_136311.1| - 6.3e-21 74.8 7.9 7.3e-21 74.6 7.9 1.0 1 0 0 1 1 1 1 GtrA-like protein Sulfatase PF00884.23 gi|55378462|ref|YP_136312.1| - 4.2e-35 121.6 0.1 5.7e-35 121.2 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|55378462|ref|YP_136312.1| - 2.8e-08 33.8 0.2 1.3e-05 25.0 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|55378462|ref|YP_136312.1| - 0.0095 16.2 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF1501 PF07394.12 gi|55378462|ref|YP_136312.1| - 0.046 12.8 0.1 0.088 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|55378462|ref|YP_136312.1| - 0.31 9.6 0.0 0.37 9.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Acetyltransf_1 PF00583.25 gi|55378463|ref|YP_136313.1| - 3.3e-12 46.7 0.0 3.6e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55378463|ref|YP_136313.1| - 1.7e-11 44.1 0.1 2.4e-11 43.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55378463|ref|YP_136313.1| - 6e-08 32.5 0.0 9.5e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|55378463|ref|YP_136313.1| - 6.4e-08 32.9 0.0 8e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55378463|ref|YP_136313.1| - 0.0015 18.6 0.2 0.0019 18.2 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55378463|ref|YP_136313.1| - 0.0062 16.7 0.0 0.0092 16.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AHJR-like PF18743.1 gi|55378463|ref|YP_136313.1| - 0.12 11.9 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 REase_AHJR-like ABC1 PF03109.16 gi|55378464|ref|YP_136314.1| - 1.4e-07 31.7 0.0 3.9e-07 30.3 0.0 1.8 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|55378464|ref|YP_136314.1| - 0.0013 18.1 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|55378464|ref|YP_136314.1| - 0.0059 16.6 0.3 0.023 14.6 0.2 1.9 1 1 1 2 2 2 1 Phosphotransferase enzyme family HSP20 PF00011.21 gi|55378465|ref|YP_136315.1| - 1.8e-11 44.0 0.0 2.1e-11 43.9 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|55378465|ref|YP_136315.1| - 3.6e-05 23.2 0.5 0.00013 21.5 0.4 1.9 1 1 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|55378465|ref|YP_136315.1| - 9.2e-05 22.6 0.3 0.0019 18.3 0.3 2.0 2 0 0 2 2 2 1 GvpH CysA_C_terminal PF17850.1 gi|55378465|ref|YP_136315.1| - 0.012 16.2 1.8 1.4 9.5 0.1 3.1 1 1 2 3 3 3 0 CysA C-terminal regulatory domain TubC_N PF18563.1 gi|55378465|ref|YP_136315.1| - 0.19 11.7 0.0 6.2 6.9 0.0 2.3 2 0 0 2 2 2 0 TubC N-terminal docking domain GIDE PF12483.8 gi|55378466|ref|YP_136316.1| - 1.4e-07 31.1 1.3 1.7e-06 27.5 1.3 2.5 1 1 0 1 1 1 1 E3 Ubiquitin ligase MoCF_biosynth PF00994.24 gi|55378467|ref|YP_136317.1| - 1.6e-11 44.1 0.0 2.9e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_N PF03453.17 gi|55378467|ref|YP_136317.1| - 3.1e-06 27.0 0.7 0.016 15.0 0.1 2.5 1 1 1 2 2 2 2 MoeA N-terminal region (domain I and II) MoeA_C PF03454.15 gi|55378467|ref|YP_136317.1| - 0.00014 22.0 0.1 0.00039 20.5 0.1 1.8 1 1 0 1 1 1 1 MoeA C-terminal region (domain IV) HAD_2 PF13419.6 gi|55378468|ref|YP_136318.1| - 3.2e-19 69.7 0.0 4.1e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55378468|ref|YP_136318.1| - 3.1e-08 34.3 0.4 4.3e-08 33.8 0.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55378468|ref|YP_136318.1| - 5.4e-08 33.4 0.0 1.7e-06 28.5 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55378468|ref|YP_136318.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like Pterin_4a PF01329.19 gi|55378469|ref|YP_136319.1| - 7e-26 90.2 0.0 7.7e-26 90.1 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.8 gi|55378469|ref|YP_136319.1| - 0.027 14.6 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 Translation-initiation factor 2 GlutR_N PF05201.15 gi|161723235|ref|YP_136320.2| - 6e-34 116.9 1.0 8.7e-34 116.4 0.1 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|161723235|ref|YP_136320.2| - 2.4e-25 89.2 1.1 4.6e-25 88.3 0.1 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|161723235|ref|YP_136320.2| - 1.4e-20 73.5 2.0 3.2e-20 72.4 2.0 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|161723235|ref|YP_136320.2| - 2.7e-07 30.3 2.4 3.4e-07 30.0 1.3 1.8 1 1 1 2 2 2 1 Glucose dehydrogenase C-terminus NAD_binding_2 PF03446.15 gi|161723235|ref|YP_136320.2| - 0.0011 19.2 4.1 0.0014 18.8 0.1 2.6 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase zf-C4H2 PF10146.9 gi|161723235|ref|YP_136320.2| - 0.0014 19.0 0.3 0.0035 17.7 0.2 1.7 2 0 0 2 2 2 1 Zinc finger-containing protein Sacchrp_dh_NADP PF03435.18 gi|161723235|ref|YP_136320.2| - 0.0077 16.5 0.6 0.0077 16.5 0.6 2.7 2 1 1 3 3 3 1 Saccharopine dehydrogenase NADP binding domain DUF4476 PF14771.6 gi|161723235|ref|YP_136320.2| - 0.011 16.0 0.2 0.023 15.0 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4476) DNA_gyraseB PF00204.25 gi|161723235|ref|YP_136320.2| - 0.078 12.4 1.0 0.18 11.2 1.0 1.6 1 0 0 1 1 1 0 DNA gyrase B NAD_binding_7 PF13241.6 gi|161723235|ref|YP_136320.2| - 0.18 12.2 2.3 0.2 12.1 0.2 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding DUF2939 PF11159.8 gi|161723235|ref|YP_136320.2| - 1.4 9.4 6.0 2.9 8.4 0.0 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2939) NAD_binding_7 PF13241.6 gi|55378471|ref|YP_136321.1| - 3.5e-22 78.8 0.0 5e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|55378471|ref|YP_136321.1| - 0.00012 21.4 0.0 0.00019 20.8 0.0 1.4 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|55378471|ref|YP_136321.1| - 0.1 12.4 0.6 0.26 11.1 0.6 1.8 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region AsnC_trans_reg2 PF17805.1 gi|55378472|ref|YP_136322.1| - 4.4e-51 171.0 0.3 3.9e-25 87.8 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain zinc_ribbon_15 PF17032.5 gi|55378473|ref|YP_136323.1| - 0.0039 17.9 0.5 0.004 17.9 0.5 1.1 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|55378473|ref|YP_136323.1| - 0.0045 17.0 1.0 0.0064 16.5 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55378473|ref|YP_136323.1| - 0.017 14.8 3.5 0.024 14.4 3.5 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CSD PF00313.22 gi|55378475|ref|YP_136325.1| - 1.9e-20 72.5 0.1 2.1e-20 72.3 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|55378475|ref|YP_136325.1| - 0.017 15.0 1.7 0.025 14.5 1.7 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|55378475|ref|YP_136325.1| - 0.018 14.7 2.5 0.028 14.1 2.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|55378475|ref|YP_136325.1| - 0.03 14.2 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain CusF_Ec PF11604.8 gi|55378475|ref|YP_136325.1| - 0.11 12.4 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF CSD PF00313.22 gi|55378476|ref|YP_136326.1| - 1.7e-21 75.8 0.1 1.9e-21 75.7 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|55378476|ref|YP_136326.1| - 0.0019 18.0 0.0 0.0021 17.9 0.0 1.1 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|55378476|ref|YP_136326.1| - 0.023 14.6 3.4 0.051 13.5 3.4 1.6 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.8 gi|55378476|ref|YP_136326.1| - 0.043 13.8 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.11 gi|55378476|ref|YP_136326.1| - 0.054 13.2 2.6 0.058 13.1 2.6 1.4 1 1 0 1 1 1 0 Ribonuclease B OB domain Prenyltransf PF01255.19 gi|55378477|ref|YP_136327.1| - 8.4e-68 228.2 0.0 1.1e-67 227.9 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|55378478|ref|YP_136328.1| - 3.2e-11 43.2 0.6 3.4e-11 43.1 0.6 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.16 gi|55378479|ref|YP_136329.1| - 2.3e-50 171.3 14.6 2.3e-50 171.3 14.6 2.5 2 1 0 2 2 2 1 Integral membrane protein DUF92 Acetyltransf_1 PF00583.25 gi|55378480|ref|YP_136330.1| - 4e-15 56.1 0.0 4.5e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55378480|ref|YP_136330.1| - 3.2e-10 40.0 0.0 3.4e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55378480|ref|YP_136330.1| - 7.9e-09 35.8 0.0 1.1e-08 35.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55378480|ref|YP_136330.1| - 1.2e-05 25.2 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|55378480|ref|YP_136330.1| - 0.00016 21.7 0.0 0.00026 21.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55378480|ref|YP_136330.1| - 0.14 12.3 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Toprim_4 PF13662.6 gi|55378481|ref|YP_136331.1| - 3.1e-11 43.6 0.7 2.6e-10 40.6 0.2 2.5 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|55378481|ref|YP_136331.1| - 1.7e-05 25.2 0.1 4.4e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|55378481|ref|YP_136331.1| - 0.054 13.7 0.4 0.92 9.8 0.5 2.7 1 1 0 1 1 1 0 Toprim domain Nitro_FeMo-Co PF02579.17 gi|55378481|ref|YP_136331.1| - 0.86 10.0 5.2 2.2 8.6 0.2 3.5 4 0 0 4 4 4 0 Dinitrogenase iron-molybdenum cofactor DUF3367 PF11847.8 gi|55378481|ref|YP_136331.1| - 1.7 6.4 9.7 3.5 5.4 4.3 2.1 2 0 0 2 2 2 0 Alpha-(1->3)-arabinofuranosyltransferase AP_endonuc_2 PF01261.24 gi|55378482|ref|YP_136332.1| - 3.6e-15 56.0 1.5 6.2e-14 51.9 1.0 2.5 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel tRNA_bind PF01588.20 gi|55378483|ref|YP_136333.1| - 5.6e-19 68.1 0.0 6.4e-19 67.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3311 PF11755.8 gi|55378484|ref|YP_136334.1| - 5.1e-15 55.2 16.9 5.6e-15 55.0 16.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) GTA_holin_3TM PF11351.8 gi|55378484|ref|YP_136334.1| - 5.3 7.6 9.1 6.4 7.3 9.1 1.1 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release SSF PF00474.17 gi|55378485|ref|YP_136335.1| - 1.4e-41 142.7 26.7 1.9e-41 142.3 26.7 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2892 PF11127.8 gi|55378486|ref|YP_136336.1| - 5.7e-10 39.1 0.1 7.2e-10 38.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3567 PF12091.8 gi|55378487|ref|YP_136337.1| - 0.035 14.2 0.1 0.1 12.7 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) tRNA-synt_1 PF00133.22 gi|55378488|ref|YP_136338.1| - 1.3e-128 429.9 0.2 2.9e-127 425.4 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|55378488|ref|YP_136338.1| - 1.7e-37 128.7 0.0 4.2e-37 127.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|55378488|ref|YP_136338.1| - 4.4e-20 71.8 0.4 1.7e-09 37.0 0.0 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|55378488|ref|YP_136338.1| - 5.9e-06 25.9 0.0 1.4e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|55378488|ref|YP_136338.1| - 0.00011 21.2 0.0 0.0028 16.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|55378488|ref|YP_136338.1| - 0.00048 19.6 0.0 0.24 10.7 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|55378488|ref|YP_136338.1| - 0.001 19.0 0.3 0.032 14.2 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|55378488|ref|YP_136338.1| - 0.0026 17.8 2.5 0.066 13.3 0.6 2.9 2 0 0 2 2 2 1 Zinc ribbon domain zf-dskA_traR PF01258.17 gi|55378488|ref|YP_136338.1| - 0.014 15.3 0.2 0.014 15.3 0.2 2.8 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger HypA PF01155.19 gi|55378488|ref|YP_136338.1| - 0.15 12.1 0.2 4 7.5 0.1 2.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|55378488|ref|YP_136338.1| - 0.15 12.4 2.2 17 5.9 0.0 3.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|55378488|ref|YP_136338.1| - 0.6 9.6 4.2 1.4 8.4 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Apolipoprotein PF01442.18 gi|55378488|ref|YP_136338.1| - 2.5 7.9 7.0 0.16 11.8 0.3 2.3 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain DUF1405 PF07187.11 gi|55378490|ref|YP_136340.1| - 3e-49 167.0 12.5 3.7e-49 166.7 12.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) SOR_SNZ PF01680.17 gi|55378491|ref|YP_136341.1| - 3.1e-97 324.4 6.0 4e-97 324.0 6.0 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|55378491|ref|YP_136341.1| - 5.5e-12 45.5 2.0 3.2e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|55378491|ref|YP_136341.1| - 0.0014 17.8 0.4 0.4 9.8 0.0 2.4 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|55378491|ref|YP_136341.1| - 0.0032 16.7 0.1 0.27 10.4 0.0 2.3 2 1 0 2 2 2 2 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|55378491|ref|YP_136341.1| - 0.038 13.6 0.4 0.67 9.5 0.0 2.6 2 1 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family MS_channel PF00924.18 gi|55378492|ref|YP_136342.1| - 6.9e-49 166.2 0.0 1.4e-48 165.2 0.0 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF2150 PF09920.9 gi|55378494|ref|YP_136344.1| - 4.1e-72 242.1 7.6 4.7e-72 241.9 7.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.16 gi|55378495|ref|YP_136345.1| - 3.6e-06 26.9 4.2 3.6e-06 26.9 4.2 5.7 7 1 1 8 8 8 1 Bacterial Ig-like domain (group 1) PKD PF00801.20 gi|55378495|ref|YP_136345.1| - 0.0036 17.1 5.9 0.066 13.1 0.1 3.9 4 0 0 4 4 4 2 PKD domain Invasin_D3 PF09134.10 gi|55378495|ref|YP_136345.1| - 0.0042 17.4 3.5 0.0042 17.4 3.5 5.5 6 1 0 6 6 6 2 Invasin, domain 3 MG4 PF17789.1 gi|55378495|ref|YP_136345.1| - 0.025 14.7 0.2 0.025 14.7 0.2 3.2 4 0 0 4 4 4 0 Macroglobulin domain MG4 CAP PF00188.26 gi|55378496|ref|YP_136346.1| - 0.00039 21.2 0.1 0.00098 20.0 0.0 1.7 1 1 1 2 2 2 1 Cysteine-rich secretory protein family Med13_C PF06333.12 gi|55378496|ref|YP_136346.1| - 0.074 12.3 6.1 0.081 12.2 6.1 1.1 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain PepSY_TM PF03929.16 gi|55378496|ref|YP_136346.1| - 0.083 12.6 0.0 0.096 12.3 0.0 1.2 1 0 0 1 1 1 0 PepSY-associated TM region Radial_spoke_3 PF06098.11 gi|55378497|ref|YP_136347.1| - 0.2 10.9 5.4 0.29 10.4 5.4 1.2 1 0 0 1 1 1 0 Radial spoke protein 3 CCD PF07860.11 gi|55378497|ref|YP_136347.1| - 2.8 8.0 7.0 0.47 10.5 2.8 1.8 1 1 1 2 2 2 0 WisP family C-Terminal Region MGC-24 PF05283.11 gi|55378497|ref|YP_136347.1| - 4.9 7.6 9.2 8.1 6.9 9.2 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin HMG_CoA_synt_N PF01154.17 gi|55378498|ref|YP_136348.1| - 2.6e-26 92.5 0.0 3.7e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|55378498|ref|YP_136348.1| - 6.6e-17 62.0 0.0 1.6e-16 60.8 0.0 1.5 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HTH_31 PF13560.6 gi|55378499|ref|YP_136349.1| - 3.8e-09 36.7 0.1 2.6e-08 34.1 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|55378499|ref|YP_136349.1| - 2.2e-08 34.0 0.0 4.6e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|55378499|ref|YP_136349.1| - 5.2e-05 23.2 0.0 0.00021 21.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55378499|ref|YP_136349.1| - 0.025 14.4 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family IspD PF01128.19 gi|55378499|ref|YP_136349.1| - 0.057 13.2 0.0 0.084 12.6 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Phage_CI_repr PF07022.13 gi|55378499|ref|YP_136349.1| - 0.14 12.3 0.0 0.79 9.9 0.0 2.1 2 1 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|55378499|ref|YP_136349.1| - 0.15 12.0 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Pilin_N PF07790.11 gi|55378500|ref|YP_136350.1| - 1.2e-08 35.7 0.0 2.9e-08 34.5 0.0 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal AAA PF00004.29 gi|55378501|ref|YP_136351.1| - 2.8e-11 44.0 0.0 9.2e-11 42.3 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|55378501|ref|YP_136351.1| - 5e-06 26.4 0.0 1.2e-05 25.1 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|55378501|ref|YP_136351.1| - 0.00028 21.3 0.0 0.0085 16.5 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|55378501|ref|YP_136351.1| - 0.00088 19.6 0.0 0.21 11.8 0.0 2.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|55378501|ref|YP_136351.1| - 0.0012 18.9 0.1 0.0082 16.1 0.0 2.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|55378501|ref|YP_136351.1| - 0.0025 18.2 0.0 0.037 14.4 0.0 2.4 2 0 0 2 2 2 1 RNA helicase DUF815 PF05673.13 gi|55378501|ref|YP_136351.1| - 0.0034 16.6 0.0 0.007 15.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|55378501|ref|YP_136351.1| - 0.0043 16.8 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|55378501|ref|YP_136351.1| - 0.0082 15.7 0.4 0.12 12.0 0.0 2.5 1 1 1 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|55378501|ref|YP_136351.1| - 0.017 15.0 0.0 0.073 12.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_28 PF13521.6 gi|55378501|ref|YP_136351.1| - 0.022 15.0 0.0 0.062 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|55378501|ref|YP_136351.1| - 0.027 13.7 0.0 0.053 12.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|55378501|ref|YP_136351.1| - 0.044 13.7 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase Rad17 PF03215.15 gi|55378501|ref|YP_136351.1| - 0.047 13.6 0.0 0.086 12.8 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|55378501|ref|YP_136351.1| - 0.051 13.0 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|55378501|ref|YP_136351.1| - 0.12 12.5 0.0 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|55378501|ref|YP_136351.1| - 0.14 12.1 0.0 0.48 10.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|55378501|ref|YP_136351.1| - 0.18 11.9 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|55378502|ref|YP_136352.1| - 1.4e-18 67.3 9.0 1.4e-18 67.3 9.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TatC PF00902.18 gi|55378502|ref|YP_136352.1| - 1.9 8.2 11.6 0.092 12.6 4.2 2.4 3 0 0 3 3 3 0 Sec-independent protein translocase protein (TatC) ABC_tran PF00005.27 gi|55378503|ref|YP_136353.1| - 1.1e-31 110.1 0.0 1.5e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378503|ref|YP_136353.1| - 8.9e-12 45.4 0.0 3.4e-07 30.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55378503|ref|YP_136353.1| - 1.3e-08 34.6 0.0 1.4e-07 31.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|55378503|ref|YP_136353.1| - 0.00025 20.8 0.0 0.00031 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55378503|ref|YP_136353.1| - 0.00027 20.6 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55378503|ref|YP_136353.1| - 0.0037 17.6 0.0 0.0049 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|55378503|ref|YP_136353.1| - 0.0042 17.6 0.0 0.0084 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|55378503|ref|YP_136353.1| - 0.014 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|55378503|ref|YP_136353.1| - 0.02 15.2 0.1 0.029 14.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|55378503|ref|YP_136353.1| - 0.045 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|55378503|ref|YP_136353.1| - 0.046 12.5 0.0 1.4 7.6 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class ATP_bind_1 PF03029.17 gi|55378503|ref|YP_136353.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|55378503|ref|YP_136353.1| - 0.098 12.8 0.1 0.13 12.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|55378503|ref|YP_136353.1| - 0.1 12.8 0.6 1.6 9.0 0.3 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|55378503|ref|YP_136353.1| - 0.12 12.3 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|55378503|ref|YP_136353.1| - 0.13 12.6 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|55378503|ref|YP_136353.1| - 0.18 12.3 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|55378503|ref|YP_136353.1| - 0.25 11.0 0.0 2.5 7.7 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|55378504|ref|YP_136354.1| - 5e-23 81.8 9.4 6.2e-23 81.5 9.4 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|55378505|ref|YP_136355.1| - 6.3e-56 189.3 0.1 7.2e-56 189.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|55378505|ref|YP_136355.1| - 3.3e-08 33.7 0.1 3.9e-07 30.3 0.1 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|55378505|ref|YP_136355.1| - 0.0017 18.4 0.1 0.006 16.6 0.0 1.8 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|55378505|ref|YP_136355.1| - 0.016 14.8 0.1 0.02 14.5 0.1 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|55378505|ref|YP_136355.1| - 0.089 12.7 0.5 0.2 11.6 0.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence COX15-CtaA PF02628.15 gi|55378506|ref|YP_136356.1| - 4.2e-10 39.2 15.4 0.00072 18.7 2.4 2.0 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein MCPsignal PF00015.21 gi|55378507|ref|YP_136357.1| - 2.3e-42 144.7 52.7 2.9e-40 137.9 22.8 3.7 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_4 PF08448.10 gi|55378507|ref|YP_136357.1| - 5.6e-12 45.9 0.1 2.1e-10 40.8 0.1 3.1 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|55378507|ref|YP_136357.1| - 1.6e-10 40.9 0.0 6.6e-10 39.0 0.0 2.1 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55378507|ref|YP_136357.1| - 4.1e-08 33.4 0.1 2.3e-07 31.0 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|55378507|ref|YP_136357.1| - 0.00031 20.7 0.1 0.0024 17.8 0.0 2.5 2 0 0 2 2 2 1 PAS domain DUF948 PF06103.11 gi|55378507|ref|YP_136357.1| - 0.00071 19.8 45.9 0.011 16.0 6.5 5.4 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) MLTR_LBD PF17765.1 gi|55378507|ref|YP_136357.1| - 0.0011 19.1 3.1 0.0028 17.8 0.0 3.2 3 1 1 4 4 3 1 MmyB-like transcription regulator ligand binding domain DUF1664 PF07889.12 gi|55378507|ref|YP_136357.1| - 0.007 16.4 35.2 0.043 13.9 4.7 4.8 3 2 2 5 5 4 2 Protein of unknown function (DUF1664) HAMP PF00672.25 gi|55378507|ref|YP_136357.1| - 0.028 14.8 0.1 0.028 14.8 0.1 4.1 5 0 0 5 5 2 0 HAMP domain PAS_3 PF08447.12 gi|55378507|ref|YP_136357.1| - 0.064 13.6 0.0 2 8.7 0.0 3.0 1 1 0 1 1 1 0 PAS fold ERM PF00769.19 gi|55378507|ref|YP_136357.1| - 0.075 12.8 29.2 0.81 9.4 13.1 3.2 3 0 0 3 3 3 0 Ezrin/radixin/moesin family Spc7 PF08317.11 gi|55378507|ref|YP_136357.1| - 0.098 11.5 34.2 0.18 10.7 11.6 3.2 1 1 2 3 3 3 0 Spc7 kinetochore protein CheZ PF04344.13 gi|55378507|ref|YP_136357.1| - 0.13 12.2 29.3 1.1 9.1 5.9 3.7 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ Baculo_PEP_C PF04513.12 gi|55378507|ref|YP_136357.1| - 0.14 12.2 29.9 0.63 10.1 6.0 4.3 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus HD_2 PF12917.7 gi|55378507|ref|YP_136357.1| - 0.15 11.8 11.1 0.64 9.7 2.1 2.9 2 1 0 2 2 2 0 HD containing hydrolase-like enzyme SF1-HH PF16275.5 gi|55378507|ref|YP_136357.1| - 0.16 12.3 0.2 0.72 10.2 0.0 2.2 2 0 0 2 2 1 0 Splicing factor 1 helix-hairpin domain IFT20 PF14931.6 gi|55378507|ref|YP_136357.1| - 0.17 12.0 19.5 0.31 11.2 0.0 4.4 3 1 1 4 4 4 0 Intraflagellar transport complex B, subunit 20 MscS_porin PF12795.7 gi|55378507|ref|YP_136357.1| - 0.38 10.3 32.1 0.094 12.3 11.9 2.9 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF745 PF05335.13 gi|55378507|ref|YP_136357.1| - 0.43 10.3 46.5 0.19 11.5 10.2 4.4 4 1 1 5 5 5 0 Protein of unknown function (DUF745) DUF3450 PF11932.8 gi|55378507|ref|YP_136357.1| - 0.64 9.3 38.9 0.13 11.5 12.6 4.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DUF489 PF04356.12 gi|55378507|ref|YP_136357.1| - 0.66 10.0 6.2 7.5 6.5 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF489) IFT57 PF10498.9 gi|55378507|ref|YP_136357.1| - 0.8 8.6 27.8 0.23 10.4 4.3 3.9 3 1 1 4 4 4 0 Intra-flagellar transport protein 57 DASH_Hsk3 PF08227.11 gi|55378507|ref|YP_136357.1| - 0.9 10.0 4.3 4.3 7.8 4.3 2.2 1 0 0 1 1 1 0 DASH complex subunit Hsk3 like Sec34 PF04136.15 gi|55378507|ref|YP_136357.1| - 0.97 9.3 21.6 4.9 7.0 3.6 4.4 2 2 3 5 5 5 0 Sec34-like family AIP3 PF03915.13 gi|55378507|ref|YP_136357.1| - 1.5 7.8 29.6 0.94 8.5 10.4 2.6 1 1 1 2 2 2 0 Actin interacting protein 3 Atg14 PF10186.9 gi|55378507|ref|YP_136357.1| - 2 7.4 9.1 11 4.9 4.5 2.3 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Golgin_A5 PF09787.9 gi|55378507|ref|YP_136357.1| - 2.1 7.8 31.7 2.4 7.5 13.1 2.8 1 1 1 2 2 2 0 Golgin subfamily A member 5 Folliculin PF11704.8 gi|55378507|ref|YP_136357.1| - 3 7.7 12.4 15 5.4 0.4 3.0 2 1 0 2 2 2 0 Vesicle coat protein involved in Golgi to plasma membrane transport TolA_bind_tri PF16331.5 gi|55378507|ref|YP_136357.1| - 3.1 7.9 13.2 1.5 8.9 4.8 3.5 2 1 1 3 3 3 0 TolA binding protein trimerisation Laminin_II PF06009.12 gi|55378507|ref|YP_136357.1| - 3.2 7.8 39.7 1.6 8.8 4.2 4.7 2 2 2 4 4 4 0 Laminin Domain II SKA1 PF07160.12 gi|55378507|ref|YP_136357.1| - 3.8 7.3 19.5 5 6.9 7.8 2.7 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Snapin_Pallidin PF14712.6 gi|55378507|ref|YP_136357.1| - 3.9 8.0 13.5 3.8 8.0 1.3 4.2 3 1 0 3 3 3 0 Snapin/Pallidin Jnk-SapK_ap_N PF09744.9 gi|55378507|ref|YP_136357.1| - 4 7.6 25.5 6.8 6.9 5.6 3.3 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 DASH_Dam1 PF08653.10 gi|55378507|ref|YP_136357.1| - 4.2 7.2 8.1 4.9 7.0 0.3 4.7 6 0 0 6 6 4 0 DASH complex subunit Dam1 CENP-K PF11802.8 gi|55378507|ref|YP_136357.1| - 4.8 6.7 9.5 2 8.0 3.1 2.6 3 0 0 3 3 3 0 Centromere-associated protein K Prominin PF05478.11 gi|55378507|ref|YP_136357.1| - 5.5 4.8 20.8 0.3 9.0 2.8 2.4 1 1 0 2 2 2 0 Prominin CREPT PF16566.5 gi|55378507|ref|YP_136357.1| - 5.6 7.1 18.8 1.3 9.2 2.1 4.1 2 2 2 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour DUF1759 PF03564.15 gi|55378507|ref|YP_136357.1| - 5.6 6.9 10.2 1.8 8.5 0.9 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1759) ATG16 PF08614.11 gi|55378507|ref|YP_136357.1| - 7.7 6.7 32.6 2.9 8.1 10.8 2.6 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) FlgN PF05130.12 gi|55378507|ref|YP_136357.1| - 8.6 6.9 26.7 1.5 9.3 7.1 3.9 2 1 3 5 5 4 0 FlgN protein BLOC1_2 PF10046.9 gi|55378507|ref|YP_136357.1| - 9.1 6.7 27.0 14 6.1 0.3 5.4 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.18 gi|55378507|ref|YP_136357.1| - 9.4 5.5 19.8 6 6.1 6.4 3.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein PTA_PTB PF01515.19 gi|55378508|ref|YP_136358.1| - 5.5e-95 318.3 0.0 7.8e-95 317.8 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|55378508|ref|YP_136358.1| - 4.6e-31 108.0 0.3 2e-28 99.4 0.1 2.8 2 1 0 2 2 2 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|55378508|ref|YP_136358.1| - 1.8e-22 79.9 0.3 4.5e-22 78.5 0.3 1.6 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain RVT_3 PF13456.6 gi|55378509|ref|YP_136359.1| - 0.00031 20.5 0.0 0.00049 19.9 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like Pribosyltran PF00156.27 gi|55378511|ref|YP_136361.1| - 4.2e-16 58.9 0.0 7.7e-16 58.0 0.0 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|55378511|ref|YP_136361.1| - 0.0088 16.1 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain DEK_C PF08766.11 gi|55378511|ref|YP_136361.1| - 0.17 11.9 0.2 0.38 10.7 0.1 1.6 2 0 0 2 2 2 0 DEK C terminal domain TruD PF01142.18 gi|55378512|ref|YP_136362.1| - 7.7e-163 542.1 0.0 8.7e-163 542.0 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2138 PF09909.9 gi|55378512|ref|YP_136362.1| - 0.24 9.7 0.0 0.36 9.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) MFS_1 PF07690.16 gi|55378514|ref|YP_136364.1| - 5.9e-12 45.2 60.0 1.2e-08 34.3 30.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily SCFA_trans PF02667.14 gi|55378515|ref|YP_136365.1| - 4e-125 418.4 20.0 4.6e-125 418.2 20.0 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter DcuC PF03606.15 gi|55378515|ref|YP_136365.1| - 8.1e-05 21.2 8.7 8.1e-05 21.2 8.7 1.8 2 0 0 2 2 2 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.13 gi|55378515|ref|YP_136365.1| - 0.00023 19.5 6.0 0.00023 19.5 6.0 1.6 2 0 0 2 2 2 1 AbgT putative transporter family 2-Hacid_dh_C PF02826.19 gi|55378516|ref|YP_136366.1| - 2.2e-56 190.1 0.0 4e-56 189.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|55378516|ref|YP_136366.1| - 4.7e-29 100.7 0.1 5.3e-29 100.6 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|55378516|ref|YP_136366.1| - 0.083 13.3 0.2 1.3 9.5 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ThiP_synth PF10120.9 gi|55378517|ref|YP_136367.1| - 3.4e-51 173.1 0.3 5.4e-51 172.5 0.3 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|55378517|ref|YP_136367.1| - 1.8e-05 24.7 0.1 4.5e-05 23.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|55378517|ref|YP_136367.1| - 4.8e-05 22.8 0.0 0.00014 21.3 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|55378517|ref|YP_136367.1| - 9.3e-05 22.1 0.1 0.00035 20.3 0.1 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_37 PF13744.6 gi|55378517|ref|YP_136367.1| - 0.00032 20.6 0.1 0.0011 18.9 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|55378517|ref|YP_136367.1| - 0.0011 19.2 1.0 0.003 17.8 0.3 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|55378517|ref|YP_136367.1| - 0.0019 17.8 0.0 0.0043 16.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|55378517|ref|YP_136367.1| - 0.012 15.5 0.0 0.041 13.8 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|55378517|ref|YP_136367.1| - 0.026 14.5 0.0 0.062 13.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_38 PF13936.6 gi|55378517|ref|YP_136367.1| - 0.032 14.0 0.0 0.099 12.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain RepB PF07506.11 gi|55378517|ref|YP_136367.1| - 0.057 13.5 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_19 PF12844.7 gi|55378517|ref|YP_136367.1| - 0.062 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|55378517|ref|YP_136367.1| - 0.068 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|55378517|ref|YP_136367.1| - 0.091 12.3 0.0 0.21 11.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding KorB PF08535.10 gi|55378517|ref|YP_136367.1| - 0.11 12.5 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 KorB domain P22_Cro PF14549.6 gi|55378517|ref|YP_136367.1| - 0.12 12.3 0.1 0.35 10.8 0.1 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro TENA_THI-4 PF03070.16 gi|55378518|ref|YP_136368.1| - 6.6e-46 156.8 1.1 8.1e-46 156.5 1.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|55378519|ref|YP_136369.1| - 5.6e-23 81.9 0.0 8e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.17 gi|55378520|ref|YP_136370.1| - 1.3e-23 83.6 33.1 2.2e-23 82.8 33.1 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family DUF997 PF06196.12 gi|55378520|ref|YP_136370.1| - 4 7.5 9.4 23 5.1 3.1 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF997) DUF3742 PF12553.8 gi|55378521|ref|YP_136371.1| - 1.4 9.0 5.9 1.6 8.9 5.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) DUF3649 PF12365.8 gi|55378521|ref|YP_136371.1| - 8.5 6.2 17.9 11 5.9 11.3 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF3649) Usp PF00582.26 gi|55378522|ref|YP_136372.1| - 5.1e-12 46.5 0.0 6.1e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family Proteasome PF00227.26 gi|55378523|ref|YP_136373.1| - 3.7e-45 153.7 0.3 4.3e-45 153.5 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.26 gi|55378524|ref|YP_136374.1| - 1.8e-60 203.7 0.0 2.2e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|55378524|ref|YP_136374.1| - 7.5e-14 51.1 0.1 1.5e-13 50.2 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Phage_FRD3 PF05798.11 gi|55378524|ref|YP_136374.1| - 0.057 13.7 0.2 0.17 12.2 0.1 1.9 1 1 0 2 2 2 0 Bacteriophage FRD3 protein PTH2 PF01981.16 gi|55378525|ref|YP_136375.1| - 1.6e-38 131.6 0.0 1.8e-38 131.4 0.0 1.1 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Yip1 PF04893.17 gi|55378526|ref|YP_136376.1| - 4.9e-31 107.8 10.8 5.9e-31 107.5 10.8 1.0 1 0 0 1 1 1 1 Yip1 domain DCD PF06559.11 gi|161723234|ref|YP_136377.2| - 6.1e-25 87.8 0.0 2.6e-13 49.5 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|161723234|ref|YP_136377.2| - 4.7e-14 52.2 0.0 6.4e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase ThiP_synth PF10120.9 gi|55378528|ref|YP_136378.1| - 2.7e-53 180.0 0.8 3.7e-53 179.5 0.8 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|55378528|ref|YP_136378.1| - 1.5e-07 31.3 0.0 3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|55378528|ref|YP_136378.1| - 1.8e-05 25.0 0.4 1.8e-05 25.0 0.4 2.4 3 1 0 3 3 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|55378528|ref|YP_136378.1| - 2.5e-05 24.2 0.0 5.6e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|55378528|ref|YP_136378.1| - 7e-05 22.7 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|55378528|ref|YP_136378.1| - 0.0001 22.0 0.0 0.00022 20.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|55378528|ref|YP_136378.1| - 0.00016 21.1 0.0 0.0006 19.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_26 PF13443.6 gi|55378528|ref|YP_136378.1| - 0.0003 21.2 0.0 0.00059 20.2 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|55378528|ref|YP_136378.1| - 0.00036 20.0 0.2 0.0011 18.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55378528|ref|YP_136378.1| - 0.00091 19.1 0.0 0.0038 17.1 0.0 2.1 1 0 0 1 1 1 1 MarR family PALP PF00291.25 gi|55378528|ref|YP_136378.1| - 0.0043 16.5 0.8 0.0081 15.6 0.8 1.4 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_20 PF12840.7 gi|55378528|ref|YP_136378.1| - 0.0096 16.0 1.6 0.17 12.0 0.0 3.4 4 1 0 4 4 2 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|55378528|ref|YP_136378.1| - 0.012 15.4 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_5 PF01022.20 gi|55378528|ref|YP_136378.1| - 0.013 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|55378528|ref|YP_136378.1| - 0.013 15.6 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|55378528|ref|YP_136378.1| - 0.014 15.3 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 gi|55378528|ref|YP_136378.1| - 0.014 15.1 0.0 0.037 13.7 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|55378528|ref|YP_136378.1| - 0.021 14.7 0.0 0.078 12.9 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|55378528|ref|YP_136378.1| - 0.022 14.5 0.0 0.051 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain P22_Cro PF14549.6 gi|55378528|ref|YP_136378.1| - 0.034 14.0 0.3 0.12 12.2 0.0 2.0 2 0 0 2 2 1 0 DNA-binding transcriptional regulator Cro HTH_35 PF13693.6 gi|55378528|ref|YP_136378.1| - 0.042 13.9 0.1 0.15 12.1 0.0 1.9 2 0 0 2 2 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|55378528|ref|YP_136378.1| - 0.064 13.1 2.4 0.15 11.9 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|55378528|ref|YP_136378.1| - 0.081 12.7 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease DUF1670 PF07900.11 gi|55378528|ref|YP_136378.1| - 0.085 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_Tnp_ISL3 PF13542.6 gi|55378528|ref|YP_136378.1| - 0.087 12.3 0.0 0.36 10.3 0.0 2.1 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 KORA PF16509.5 gi|55378528|ref|YP_136378.1| - 0.092 13.0 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor RepB PF07506.11 gi|55378528|ref|YP_136378.1| - 0.1 12.7 0.1 0.27 11.3 0.0 1.7 2 0 0 2 2 2 0 RepB plasmid partitioning protein HTH_10 PF04967.12 gi|55378528|ref|YP_136378.1| - 0.11 12.3 0.1 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain HNF-1_N PF04814.13 gi|55378528|ref|YP_136378.1| - 0.17 12.5 0.0 0.33 11.6 0.0 1.3 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Methyltransf_11 PF08241.12 gi|55378529|ref|YP_136379.1| - 3.5e-13 50.0 0.0 5.7e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378529|ref|YP_136379.1| - 4e-13 49.9 0.2 6.6e-13 49.2 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378529|ref|YP_136379.1| - 1.9e-09 37.5 0.0 2.2e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55378529|ref|YP_136379.1| - 8.1e-09 36.1 0.0 1.3e-08 35.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55378529|ref|YP_136379.1| - 1.4e-08 34.7 0.0 1.7e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55378529|ref|YP_136379.1| - 7.8e-08 31.9 0.0 9.9e-08 31.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|55378529|ref|YP_136379.1| - 0.004 16.9 0.0 0.0045 16.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Thi4 PF01946.17 gi|55378532|ref|YP_136382.1| - 2.1e-59 200.6 0.6 2.9e-48 164.2 0.3 2.2 1 1 1 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|55378532|ref|YP_136382.1| - 5e-12 45.9 0.4 8.2e-12 45.2 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|55378532|ref|YP_136382.1| - 7.3e-11 41.8 1.0 3.4e-08 33.0 0.5 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|55378532|ref|YP_136382.1| - 1.2e-10 41.2 0.1 2.2e-10 40.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|55378532|ref|YP_136382.1| - 1.3e-10 41.4 1.2 2.9e-06 27.1 0.3 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|55378532|ref|YP_136382.1| - 2.4e-09 36.4 0.0 3.2e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|55378532|ref|YP_136382.1| - 1.5e-08 34.8 0.1 3.5e-08 33.5 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|55378532|ref|YP_136382.1| - 2.6e-08 33.5 0.1 5.1e-08 32.5 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|55378532|ref|YP_136382.1| - 5.9e-06 25.4 0.3 0.0013 17.7 0.2 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|55378532|ref|YP_136382.1| - 9.3e-06 26.1 0.3 2.6e-05 24.7 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55378532|ref|YP_136382.1| - 1.8e-05 24.2 0.1 3.3e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|55378532|ref|YP_136382.1| - 3.4e-05 23.1 0.3 0.0012 18.0 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|55378532|ref|YP_136382.1| - 4.5e-05 23.5 0.4 0.00013 22.0 0.1 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|55378532|ref|YP_136382.1| - 0.00024 20.5 0.0 0.00086 18.7 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|55378532|ref|YP_136382.1| - 0.00073 18.7 0.2 0.0012 18.0 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Glu_dehyd_C PF16912.5 gi|55378532|ref|YP_136382.1| - 0.00097 18.7 0.5 1.6 8.2 0.0 2.7 3 0 0 3 3 3 2 Glucose dehydrogenase C-terminus Shikimate_DH PF01488.20 gi|55378532|ref|YP_136382.1| - 0.0016 18.5 0.0 0.081 13.0 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|55378532|ref|YP_136382.1| - 0.0018 18.7 0.1 0.0038 17.7 0.1 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding YjeF_N PF03853.15 gi|55378532|ref|YP_136382.1| - 0.0097 15.8 0.1 0.36 10.7 0.0 2.3 2 0 0 2 2 2 1 YjeF-related protein N-terminus TrkA_N PF02254.18 gi|55378532|ref|YP_136382.1| - 0.03 14.6 1.0 0.042 14.1 0.1 1.7 2 0 0 2 2 1 0 TrkA-N domain Ribosomal_S2 PF00318.20 gi|55378532|ref|YP_136382.1| - 0.04 13.2 0.0 0.054 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S2 AlaDh_PNT_C PF01262.21 gi|55378532|ref|YP_136382.1| - 0.058 12.7 0.3 0.15 11.4 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1188 PF06690.11 gi|55378532|ref|YP_136382.1| - 0.097 12.2 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DUF1654 PF07867.11 gi|55378534|ref|YP_136384.1| - 0.17 11.6 0.1 0.32 10.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) HTH_10 PF04967.12 gi|55378535|ref|YP_136385.1| - 2.1e-16 59.5 0.3 4.7e-16 58.3 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|55378535|ref|YP_136385.1| - 8.9e-07 28.5 0.1 0.045 13.4 0.1 2.6 2 0 0 2 2 2 2 Sigma-70, region 4 GerE PF00196.19 gi|55378535|ref|YP_136385.1| - 0.0053 16.3 0.0 0.057 13.0 0.0 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|55378535|ref|YP_136385.1| - 0.0084 15.6 0.3 0.02 14.4 0.3 1.7 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|55378535|ref|YP_136385.1| - 0.02 14.7 0.1 0.05 13.4 0.1 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|55378535|ref|YP_136385.1| - 0.034 14.2 0.3 0.21 11.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.6 gi|55378535|ref|YP_136385.1| - 0.066 12.8 0.2 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|55378535|ref|YP_136385.1| - 0.12 12.1 0.5 0.56 10.0 0.2 2.2 2 1 0 2 2 2 0 LexA DNA binding domain TetR_N PF00440.23 gi|55378535|ref|YP_136385.1| - 0.13 12.1 0.0 0.41 10.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_28 PF13518.6 gi|55378535|ref|YP_136385.1| - 0.16 12.1 0.4 0.71 10.0 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Urocanase_C PF17392.2 gi|55378536|ref|YP_136386.1| - 4.9e-87 290.4 0.1 7.9e-87 289.8 0.1 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|55378536|ref|YP_136386.1| - 4.8e-82 274.7 0.1 6.7e-82 274.2 0.1 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|55378536|ref|YP_136386.1| - 5.6e-58 194.1 0.0 1e-57 193.3 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain Arginase PF00491.21 gi|55378537|ref|YP_136387.1| - 1.8e-57 195.0 1.6 2e-57 194.8 1.6 1.0 1 0 0 1 1 1 1 Arginase family GCH_III PF05165.12 gi|55378537|ref|YP_136387.1| - 0.023 13.9 0.0 0.15 11.3 0.0 2.0 2 0 0 2 2 2 0 GTP cyclohydrolase III Amidohydro_1 PF01979.20 gi|55378538|ref|YP_136388.1| - 4.5e-13 49.2 1.2 3e-10 40.0 1.2 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|55378538|ref|YP_136388.1| - 1.1e-10 41.6 16.2 4.3e-05 23.2 8.4 2.2 1 1 1 2 2 2 2 Amidohydrolase family Lyase_aromatic PF00221.19 gi|55378539|ref|YP_136389.1| - 6.3e-185 615.3 13.0 7.3e-185 615.0 13.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase AAA PF00004.29 gi|55378540|ref|YP_136390.1| - 4.9e-81 269.7 0.0 8.7e-40 136.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55378540|ref|YP_136390.1| - 2.9e-13 49.4 2.6 1.3e-06 28.1 0.2 2.6 2 0 0 2 2 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|55378540|ref|YP_136390.1| - 1.7e-11 44.1 0.0 5.2e-05 23.0 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|55378540|ref|YP_136390.1| - 1.4e-10 41.3 0.3 9.6e-05 22.4 0.0 3.4 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|55378540|ref|YP_136390.1| - 5e-10 40.0 5.7 0.0059 17.0 0.1 4.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|55378540|ref|YP_136390.1| - 1.2e-09 38.6 0.0 0.00095 19.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|55378540|ref|YP_136390.1| - 4.4e-08 33.4 0.0 0.034 14.3 0.0 4.0 4 0 0 4 4 4 2 AAA domain IstB_IS21 PF01695.17 gi|55378540|ref|YP_136390.1| - 4.9e-08 32.9 0.4 0.0065 16.2 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|55378540|ref|YP_136390.1| - 2.2e-07 31.2 0.3 0.05 13.9 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|55378540|ref|YP_136390.1| - 2.3e-07 31.4 0.0 0.039 14.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|55378540|ref|YP_136390.1| - 2.3e-07 31.2 0.0 0.018 15.4 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_14 PF13173.6 gi|55378540|ref|YP_136390.1| - 2.6e-07 30.7 0.0 0.023 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|55378540|ref|YP_136390.1| - 7.5e-07 29.1 0.0 0.059 13.1 0.0 2.9 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|55378540|ref|YP_136390.1| - 9.9e-07 28.8 1.0 0.7 9.8 0.0 4.3 2 2 2 4 4 4 2 NACHT domain TIP49 PF06068.13 gi|55378540|ref|YP_136390.1| - 1.7e-05 24.2 0.0 0.14 11.3 0.0 2.7 2 1 0 2 2 2 2 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|55378540|ref|YP_136390.1| - 5.4e-05 22.7 0.3 0.18 11.2 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|55378540|ref|YP_136390.1| - 6.4e-05 23.0 0.0 0.17 11.8 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_28 PF13521.6 gi|55378540|ref|YP_136390.1| - 6.7e-05 23.2 2.5 0.23 11.7 0.0 3.6 4 1 0 4 4 2 2 AAA domain Zeta_toxin PF06414.12 gi|55378540|ref|YP_136390.1| - 7.4e-05 22.1 0.3 0.25 10.6 0.0 2.8 3 0 0 3 3 3 2 Zeta toxin Bac_DnaA PF00308.18 gi|55378540|ref|YP_136390.1| - 8.6e-05 22.5 0.0 0.43 10.4 0.0 2.9 2 2 0 2 2 2 2 Bacterial dnaA protein AAA_25 PF13481.6 gi|55378540|ref|YP_136390.1| - 0.00018 21.2 3.9 1.4 8.4 0.2 3.9 2 2 1 3 3 3 1 AAA domain Cytidylate_kin2 PF13189.6 gi|55378540|ref|YP_136390.1| - 0.00026 21.2 0.0 0.66 10.1 0.0 2.5 2 0 0 2 2 2 2 Cytidylate kinase-like family ABC_tran PF00005.27 gi|55378540|ref|YP_136390.1| - 0.00037 21.0 0.0 1.4 9.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|55378540|ref|YP_136390.1| - 0.00046 20.0 0.0 0.3 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|55378540|ref|YP_136390.1| - 0.00053 20.0 0.0 0.42 10.6 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|55378540|ref|YP_136390.1| - 0.00066 19.6 0.0 0.77 9.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|55378540|ref|YP_136390.1| - 0.00077 19.9 0.6 0.73 10.3 0.1 2.8 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|55378540|ref|YP_136390.1| - 0.0035 17.1 0.1 1.1 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|55378540|ref|YP_136390.1| - 0.0065 16.6 0.1 3.4 7.8 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|55378540|ref|YP_136390.1| - 0.0078 15.7 0.0 1.3 8.5 0.0 2.6 2 1 0 2 2 2 1 P-loop containing dynein motor region SKI PF01202.22 gi|55378540|ref|YP_136390.1| - 0.01 15.9 0.0 4.4 7.4 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.6 gi|55378540|ref|YP_136390.1| - 0.036 13.8 0.0 6.4 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|55378540|ref|YP_136390.1| - 0.04 13.6 0.0 11 5.7 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain Guanylate_kin PF00625.21 gi|55378540|ref|YP_136390.1| - 0.045 13.4 0.1 24 4.6 0.0 3.6 3 2 2 5 5 5 0 Guanylate kinase AAA_19 PF13245.6 gi|55378540|ref|YP_136390.1| - 0.049 14.0 0.1 17 5.7 0.0 3.2 3 0 0 3 3 3 0 AAA domain Parvo_NS1 PF01057.17 gi|55378540|ref|YP_136390.1| - 0.051 12.7 0.1 8.1 5.4 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|55378540|ref|YP_136390.1| - 0.091 12.2 0.8 8.4 5.8 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein ATPase_2 PF01637.18 gi|55378540|ref|YP_136390.1| - 0.1 12.5 0.3 4.7 7.1 0.0 3.0 3 1 1 4 4 3 0 ATPase domain predominantly from Archaea Lipoprotein_Ltp PF07553.11 gi|55378540|ref|YP_136390.1| - 0.11 12.8 0.1 23 5.3 0.0 2.6 2 0 0 2 2 2 0 Host cell surface-exposed lipoprotein DUF815 PF05673.13 gi|55378540|ref|YP_136390.1| - 0.12 11.6 0.0 8.3 5.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) ATPase PF06745.13 gi|55378540|ref|YP_136390.1| - 0.14 11.5 0.2 15 4.8 0.0 2.6 2 1 0 2 2 2 0 KaiC PPS_PS PF02006.16 gi|55378541|ref|YP_136391.1| - 1.5e-70 236.3 0.7 1.8e-70 236.1 0.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase PhzC-PhzF PF02567.16 gi|55378542|ref|YP_136392.1| - 5.5e-39 134.3 0.7 6.3e-39 134.1 0.7 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|55378542|ref|YP_136392.1| - 0.0026 17.9 0.9 0.0051 17.0 0.1 1.8 2 1 0 2 2 2 1 Diaminopimelate epimerase PPDK_N PF01326.19 gi|55378543|ref|YP_136393.1| - 2.4e-106 355.7 0.1 3.6e-106 355.2 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|55378543|ref|YP_136393.1| - 1.6e-79 267.1 0.0 2.4e-79 266.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|55378543|ref|YP_136393.1| - 3.9e-30 103.4 2.5 1.5e-29 101.5 1.7 2.5 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain RdRP PF05183.12 gi|55378543|ref|YP_136393.1| - 0.12 11.0 0.0 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 RNA dependent RNA polymerase ATPase PF06745.13 gi|55378544|ref|YP_136394.1| - 2.6e-06 27.0 0.5 0.022 14.1 0.3 2.5 3 0 0 3 3 3 2 KaiC MtrD PF04207.12 gi|55378544|ref|YP_136394.1| - 0.15 11.8 0.4 0.23 11.1 0.4 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit D Pyridoxal_deC PF00282.19 gi|55378545|ref|YP_136395.1| - 5.5e-24 84.6 0.0 1.5e-23 83.1 0.0 1.6 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|55378545|ref|YP_136395.1| - 9.6e-09 34.7 0.0 1.2e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V THB PF18362.1 gi|55378545|ref|YP_136395.1| - 0.17 11.5 0.0 1.5 8.5 0.0 2.5 3 0 0 3 3 3 0 Tri-helix bundle domain tRNA-synt_1g PF09334.11 gi|55378546|ref|YP_136396.1| - 2e-134 448.2 0.1 7e-133 443.1 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|55378546|ref|YP_136396.1| - 5.8e-22 77.6 0.0 9.6e-22 76.9 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|55378546|ref|YP_136396.1| - 2.1e-09 36.2 0.3 4e-06 25.4 0.1 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|55378546|ref|YP_136396.1| - 1e-07 32.0 0.0 1.8e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|55378546|ref|YP_136396.1| - 4.2e-06 26.3 0.0 0.00061 19.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.19 gi|55378546|ref|YP_136396.1| - 0.035 13.0 0.0 0.085 11.8 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (R) tRNA-synt_1f PF01921.18 gi|55378546|ref|YP_136396.1| - 0.072 12.0 0.0 0.34 9.8 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) HSCB_C PF07743.13 gi|55378546|ref|YP_136396.1| - 0.14 12.6 5.7 13 6.4 0.1 3.2 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain NfeD PF01957.18 gi|55378548|ref|YP_136398.1| - 1.2e-07 31.9 0.0 2.8e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Band_7 PF01145.25 gi|55378549|ref|YP_136399.1| - 5.8e-41 140.4 3.0 1.1e-40 139.5 3.0 1.5 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|55378549|ref|YP_136399.1| - 0.0069 16.1 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family SNN_transmemb PF09049.10 gi|55378549|ref|YP_136399.1| - 1.3 9.0 3.4 3 7.9 3.4 1.5 1 0 0 1 1 1 0 Stannin transmembrane MarR_2 PF12802.7 gi|55378550|ref|YP_136400.1| - 1e-10 41.3 0.6 1.7e-09 37.4 0.2 2.6 2 1 0 2 2 2 1 MarR family MarR PF01047.22 gi|55378550|ref|YP_136400.1| - 6.3e-08 32.4 0.0 5.9e-07 29.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|55378550|ref|YP_136400.1| - 6.4e-08 32.3 0.2 1.4e-05 24.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|55378550|ref|YP_136400.1| - 9.1e-08 31.9 0.0 1.7e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|55378550|ref|YP_136400.1| - 1.3e-07 31.4 0.0 2.4e-05 24.1 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|55378550|ref|YP_136400.1| - 3.2e-06 27.1 2.0 4.3e-05 23.5 0.4 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55378550|ref|YP_136400.1| - 8.8e-06 25.4 4.4 0.00034 20.3 0.1 2.9 2 1 1 3 3 3 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55378550|ref|YP_136400.1| - 1.6e-05 24.8 0.0 4e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|55378550|ref|YP_136400.1| - 2.5e-05 23.7 0.0 5.5e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|55378550|ref|YP_136400.1| - 0.00014 21.9 0.0 0.36 11.0 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain GntR PF00392.21 gi|55378550|ref|YP_136400.1| - 0.00016 21.3 0.1 0.0018 17.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|55378550|ref|YP_136400.1| - 0.002 18.3 0.0 0.0066 16.6 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|55378550|ref|YP_136400.1| - 0.0049 17.2 0.0 0.023 15.0 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_29 PF13551.6 gi|55378550|ref|YP_136400.1| - 0.008 16.2 0.0 0.039 14.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|55378550|ref|YP_136400.1| - 0.018 14.8 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 gi|55378550|ref|YP_136400.1| - 0.037 14.0 0.0 0.09 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|55378550|ref|YP_136400.1| - 0.057 13.2 0.1 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_3 PF01381.22 gi|55378550|ref|YP_136400.1| - 0.061 13.4 0.0 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_CodY PF08222.11 gi|55378550|ref|YP_136400.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain PAS_3 PF08447.12 gi|55378551|ref|YP_136401.1| - 3.6e-24 84.9 0.8 2.7e-13 50.0 0.0 3.1 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|55378551|ref|YP_136401.1| - 3.9e-19 68.9 0.0 1e-18 67.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|55378551|ref|YP_136401.1| - 2.5e-17 63.0 0.5 3.6e-12 46.4 0.2 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|55378551|ref|YP_136401.1| - 1.5e-15 57.4 3.7 6.1e-12 45.8 0.1 3.0 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|55378551|ref|YP_136401.1| - 1.4e-14 54.5 0.2 1.5e-13 51.2 0.1 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55378551|ref|YP_136401.1| - 1.9e-09 37.4 0.7 4.9e-09 36.1 0.7 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|55378551|ref|YP_136401.1| - 1.8e-08 34.3 0.2 3.4e-06 27.0 0.1 2.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|55378551|ref|YP_136401.1| - 0.00022 21.2 0.0 0.00072 19.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain LexA_DNA_bind PF01726.16 gi|55378552|ref|YP_136402.1| - 0.0036 17.1 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Sigma54_CBD PF04963.13 gi|55378552|ref|YP_136402.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain HTH_6 PF01418.17 gi|55378552|ref|YP_136402.1| - 0.13 12.3 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.6 gi|55378552|ref|YP_136402.1| - 0.14 11.8 1.0 0.7 9.5 0.1 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding TRAM PF01938.20 gi|55378553|ref|YP_136403.1| - 2.5e-14 53.0 1.9 9.5e-14 51.1 2.5 1.7 2 0 0 2 2 2 1 TRAM domain DUF4249 PF14054.6 gi|55378553|ref|YP_136403.1| - 0.08 12.6 0.2 0.086 12.4 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) CxxCxxCC PF03692.15 gi|55378554|ref|YP_136404.1| - 4.2e-07 30.6 0.0 7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.17 gi|55378554|ref|YP_136404.1| - 0.035 14.4 0.1 0.069 13.5 0.1 1.4 1 0 0 1 1 1 0 High potential iron-sulfur protein Lactamase_B PF00753.27 gi|55378555|ref|YP_136405.1| - 1.9e-16 60.6 9.6 2.8e-16 60.1 9.6 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|55378555|ref|YP_136405.1| - 0.00093 19.1 0.4 0.002 18.0 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain Gluconate_2-dh3 PF13618.6 gi|55378555|ref|YP_136405.1| - 0.017 15.4 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 PQQ_3 PF13570.6 gi|55378555|ref|YP_136405.1| - 6.1 7.5 8.5 3.5 8.2 5.0 2.6 2 1 0 2 2 2 0 PQQ-like domain HTH_24 PF13412.6 gi|55378556|ref|YP_136406.1| - 1.4e-07 30.9 0.0 2.1e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55378556|ref|YP_136406.1| - 8.5e-06 25.6 0.1 1.1e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|55378556|ref|YP_136406.1| - 0.00017 21.6 0.4 0.00038 20.5 0.4 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|55378556|ref|YP_136406.1| - 0.0007 19.5 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|55378556|ref|YP_136406.1| - 0.0021 17.7 0.0 0.0031 17.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|55378556|ref|YP_136406.1| - 0.0047 16.9 0.0 0.024 14.6 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55378556|ref|YP_136406.1| - 0.005 16.8 0.0 0.0059 16.5 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|55378556|ref|YP_136406.1| - 0.0068 16.3 0.1 0.029 14.3 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|55378556|ref|YP_136406.1| - 0.0095 15.8 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|55378556|ref|YP_136406.1| - 0.014 15.7 0.0 0.019 15.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|55378556|ref|YP_136406.1| - 0.015 15.2 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|55378556|ref|YP_136406.1| - 0.034 14.7 0.0 0.044 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|55378556|ref|YP_136406.1| - 0.036 13.9 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|55378556|ref|YP_136406.1| - 0.036 13.9 0.0 0.049 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|55378556|ref|YP_136406.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Methyltransf_11 PF08241.12 gi|55378557|ref|YP_136407.1| - 4.5e-17 62.5 0.0 6.3e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378557|ref|YP_136407.1| - 1.5e-16 60.9 0.0 2.1e-16 60.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378557|ref|YP_136407.1| - 8.1e-11 41.9 0.0 1.1e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55378557|ref|YP_136407.1| - 2.4e-09 36.9 0.0 2.9e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|55378557|ref|YP_136407.1| - 5.2e-07 30.3 0.0 6.9e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55378557|ref|YP_136407.1| - 1e-05 25.5 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|55378557|ref|YP_136407.1| - 2.6e-05 24.0 0.0 5.8e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Glycos_transf_2 PF00535.26 gi|55378558|ref|YP_136408.1| - 2.8e-12 46.8 0.1 5.3e-12 45.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55378558|ref|YP_136408.1| - 0.00055 19.9 2.6 0.013 15.3 2.3 2.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|55378558|ref|YP_136408.1| - 0.044 13.2 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Amidohydro_2 PF04909.14 gi|55378559|ref|YP_136409.1| - 2.4e-14 53.8 0.8 3.1e-14 53.5 0.8 1.1 1 0 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.24 gi|55378560|ref|YP_136410.1| - 9.9e-144 479.6 19.7 1.1e-143 479.4 19.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF371 PF04027.13 gi|55378561|ref|YP_136411.1| - 2.5e-54 182.9 1.2 2.8e-54 182.7 1.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PRP4 PF08799.11 gi|55378562|ref|YP_136412.1| - 0.054 13.1 0.1 0.097 12.2 0.1 1.4 1 1 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like Glyco_hydro_2 PF00703.21 gi|55378563|ref|YP_136413.1| - 8.3e-07 29.7 0.0 2e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.18 gi|55378563|ref|YP_136413.1| - 0.084 12.8 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, sugar binding domain Laminin_II PF06009.12 gi|55378564|ref|YP_136414.1| - 0.42 10.6 37.3 0.79 9.7 12.9 3.6 1 1 1 3 3 3 0 Laminin Domain II Fez1 PF06818.15 gi|55378564|ref|YP_136414.1| - 0.96 9.9 60.7 0.8 10.1 29.2 2.2 1 1 1 2 2 2 0 Fez1 DUF3800 PF12686.7 gi|55378564|ref|YP_136414.1| - 1.4 9.6 6.3 6.5 7.4 6.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) T3SSipB PF16535.5 gi|55378564|ref|YP_136414.1| - 3.3 8.2 39.1 0.12 12.8 16.7 3.3 1 1 1 2 2 2 0 Type III cell invasion protein SipB Syntaxin_2 PF14523.6 gi|55378564|ref|YP_136414.1| - 5.1 7.5 35.7 0.055 13.8 5.7 4.1 1 1 1 3 3 3 0 Syntaxin-like protein LysE PF01810.18 gi|55378565|ref|YP_136415.1| - 3.6e-25 88.6 10.9 1.9e-23 82.9 10.9 2.1 1 1 0 1 1 1 1 LysE type translocator HD PF01966.22 gi|55378566|ref|YP_136416.1| - 1.6e-16 60.6 1.3 1.6e-16 60.6 1.3 1.7 2 0 0 2 2 2 1 HD domain Acetyltransf_10 PF13673.7 gi|55378568|ref|YP_136418.1| - 5e-11 42.6 0.0 7.7e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55378568|ref|YP_136418.1| - 5.6e-10 39.5 0.0 1.4e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55378568|ref|YP_136418.1| - 1e-09 38.6 0.0 1.8e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Zn-ribbon_8 PF09723.10 gi|55378568|ref|YP_136418.1| - 0.017 15.2 1.1 0.037 14.1 1.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain FR47 PF08445.10 gi|55378568|ref|YP_136418.1| - 0.025 14.5 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_4 PF13420.7 gi|55378568|ref|YP_136418.1| - 0.056 13.6 0.0 0.085 13.0 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain WW PF00397.26 gi|55378568|ref|YP_136418.1| - 0.082 13.0 0.2 0.23 11.6 0.2 1.8 1 0 0 1 1 1 0 WW domain Acetyltransf_9 PF13527.7 gi|55378568|ref|YP_136418.1| - 0.084 13.0 0.0 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TF_Zn_Ribbon PF08271.12 gi|55378568|ref|YP_136418.1| - 6.3 6.4 6.1 37 3.9 3.4 3.0 2 1 1 3 3 3 0 TFIIB zinc-binding Fe_dep_repress PF01325.19 gi|55378569|ref|YP_136419.1| - 4.9e-17 61.9 0.0 7.4e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|55378569|ref|YP_136419.1| - 1.4e-10 41.1 0.1 2.8e-10 40.1 0.0 1.5 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.6 gi|55378569|ref|YP_136419.1| - 7.7e-06 26.3 0.0 2.8e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|55378569|ref|YP_136419.1| - 7.5e-05 22.5 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55378569|ref|YP_136419.1| - 0.00011 22.2 0.0 0.00024 21.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|55378569|ref|YP_136419.1| - 0.00011 21.6 0.0 0.0002 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|55378569|ref|YP_136419.1| - 0.0015 18.4 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|55378569|ref|YP_136419.1| - 0.002 18.0 0.0 0.0034 17.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|55378569|ref|YP_136419.1| - 0.0021 18.4 0.0 0.0032 17.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|55378569|ref|YP_136419.1| - 0.028 14.5 0.0 0.067 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55378569|ref|YP_136419.1| - 0.031 14.1 0.0 0.083 12.7 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FeoC PF09012.10 gi|55378569|ref|YP_136419.1| - 0.049 13.7 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_13 PF11972.8 gi|55378569|ref|YP_136419.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|55378569|ref|YP_136419.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Glutaredoxin PF00462.24 gi|55378569|ref|YP_136419.1| - 0.42 10.9 2.2 40 4.5 0.1 3.0 2 1 1 3 3 3 0 Glutaredoxin Acetyltransf_3 PF13302.7 gi|55378571|ref|YP_136421.1| - 0.00017 22.2 0.3 0.00022 21.9 0.3 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain UPF0051 PF01458.17 gi|55378572|ref|YP_136422.1| - 1.4e-62 211.3 1.0 1.7e-62 210.9 1.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|55378573|ref|YP_136423.1| - 6.6e-73 245.0 0.4 8.4e-73 244.7 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.14 gi|55378573|ref|YP_136423.1| - 0.12 13.1 0.0 0.25 12.1 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase ABC_tran PF00005.27 gi|55378574|ref|YP_136424.1| - 5.1e-15 56.2 0.1 2.8e-14 53.8 0.1 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|55378574|ref|YP_136424.1| - 7.1e-06 25.6 0.2 0.032 13.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|55378574|ref|YP_136424.1| - 0.00017 22.0 0.1 0.18 12.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|55378574|ref|YP_136424.1| - 0.00017 21.5 0.0 0.075 12.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|55378574|ref|YP_136424.1| - 0.0044 16.7 0.1 0.0082 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|55378574|ref|YP_136424.1| - 0.0055 17.2 1.9 0.27 11.7 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|55378574|ref|YP_136424.1| - 0.0085 16.1 0.6 3.5 7.6 0.0 2.6 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|55378574|ref|YP_136424.1| - 0.013 15.7 0.5 0.23 11.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|55378574|ref|YP_136424.1| - 0.031 14.5 0.1 0.93 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|55378574|ref|YP_136424.1| - 0.062 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|55378574|ref|YP_136424.1| - 0.1 13.1 1.1 0.26 11.8 0.2 2.3 2 2 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|55378574|ref|YP_136424.1| - 0.12 12.0 1.4 0.43 10.2 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|55378574|ref|YP_136424.1| - 0.19 11.9 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DNA_pol_B PF00136.21 gi|55378575|ref|YP_136425.1| - 6.4e-41 140.5 0.0 9.3e-24 83.9 0.1 2.2 2 0 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|55378575|ref|YP_136425.1| - 2.2e-30 105.9 0.0 5.7e-30 104.6 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.6 gi|55378575|ref|YP_136425.1| - 9.7e-07 29.2 0.0 7.5e-06 26.3 0.0 2.3 1 1 0 1 1 1 1 Hint domain Hint PF01079.20 gi|55378575|ref|YP_136425.1| - 4.7e-06 26.3 0.0 7.7e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Hint module Intein_splicing PF14890.6 gi|55378575|ref|YP_136425.1| - 3.1e-05 24.0 0.0 0.00024 21.1 0.0 2.5 2 1 0 2 2 2 1 Intein splicing domain LAGLIDADG_3 PF14528.6 gi|55378575|ref|YP_136425.1| - 5.9e-05 23.3 0.1 0.00019 21.7 0.0 1.9 2 0 0 2 2 2 1 LAGLIDADG-like domain YolD PF08863.10 gi|55378575|ref|YP_136425.1| - 0.062 13.4 0.4 0.18 11.9 0.4 1.8 1 0 0 1 1 1 0 YolD-like protein PT-HINT PF07591.11 gi|55378575|ref|YP_136425.1| - 0.11 12.8 0.0 0.74 10.1 0.0 2.4 2 0 0 2 2 2 0 Pretoxin HINT domain DUF2120 PF09893.9 gi|55378575|ref|YP_136425.1| - 0.38 10.9 2.0 1 9.4 1.1 2.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Phage_integrase PF00589.22 gi|55378579|ref|YP_136429.1| - 3e-13 49.9 0.0 1.7e-12 47.5 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55378579|ref|YP_136429.1| - 7.2e-05 23.0 0.2 7.2e-05 23.0 0.2 2.4 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF202 PF02656.15 gi|55378580|ref|YP_136430.1| - 0.23 11.9 0.8 0.34 11.4 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF202) MarR_2 PF12802.7 gi|55378581|ref|YP_136431.1| - 0.025 14.5 0.3 0.043 13.7 0.3 1.4 1 0 0 1 1 1 0 MarR family AAA_23 PF13476.6 gi|55378582|ref|YP_136432.1| - 7e-23 82.2 5.9 7e-23 82.2 5.9 5.8 1 1 3 4 4 2 1 AAA domain AAA_29 PF13555.6 gi|55378582|ref|YP_136432.1| - 1.3e-07 31.2 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|55378582|ref|YP_136432.1| - 1.8e-07 30.3 68.3 0.0063 15.2 10.6 4.7 2 1 2 4 4 4 3 AAA domain AAA_21 PF13304.6 gi|55378582|ref|YP_136432.1| - 2.2e-07 31.0 13.5 1.6e-05 24.9 0.8 3.4 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Spc7 PF08317.11 gi|55378582|ref|YP_136432.1| - 3.2e-07 29.5 113.5 0.0061 15.5 25.7 5.9 1 1 3 5 5 5 4 Spc7 kinetochore protein AAA_15 PF13175.6 gi|55378582|ref|YP_136432.1| - 3.7e-06 26.9 46.5 7.8 6.1 46.5 4.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|55378582|ref|YP_136432.1| - 1.9e-05 24.3 0.0 1.9e-05 24.3 0.0 5.4 4 1 0 5 5 4 1 AAA domain SMC_N PF02463.19 gi|55378582|ref|YP_136432.1| - 2.5e-05 23.8 62.4 0.0012 18.3 62.4 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain zf-C4H2 PF10146.9 gi|55378582|ref|YP_136432.1| - 9.3e-05 22.8 20.9 9.3e-05 22.8 20.9 5.5 3 2 2 5 5 4 1 Zinc finger-containing protein CENP-F_leu_zip PF10473.9 gi|55378582|ref|YP_136432.1| - 0.00012 22.1 14.6 0.00012 22.1 14.6 6.5 3 2 2 6 6 5 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|55378582|ref|YP_136432.1| - 0.00025 20.3 83.5 0.0097 15.0 14.0 5.5 1 1 3 4 4 4 2 Vacuolar sorting 38 and autophagy-related subunit 14 TMF_TATA_bd PF12325.8 gi|55378582|ref|YP_136432.1| - 0.0018 18.5 5.9 0.0018 18.5 5.9 8.2 2 2 7 9 9 8 2 TATA element modulatory factor 1 TATA binding MukB PF04310.12 gi|55378582|ref|YP_136432.1| - 0.012 15.4 7.2 0.061 13.1 0.0 4.0 2 1 1 3 3 3 0 MukB N-terminal ABC_tran PF00005.27 gi|55378582|ref|YP_136432.1| - 0.22 12.0 0.0 0.22 12.0 0.0 5.4 2 1 1 3 3 1 0 ABC transporter GAS PF13851.6 gi|55378582|ref|YP_136432.1| - 1.2 8.4 94.2 0.037 13.4 20.4 5.4 2 2 2 5 5 5 0 Growth-arrest specific micro-tubule binding IFT57 PF10498.9 gi|55378582|ref|YP_136432.1| - 1.6 7.6 75.9 0.053 12.5 3.2 5.1 4 1 1 5 5 5 0 Intra-flagellar transport protein 57 DUF4201 PF13870.6 gi|55378582|ref|YP_136432.1| - 2.8 7.6 82.8 0.38 10.5 6.6 7.1 2 2 4 7 7 7 0 Domain of unknown function (DUF4201) DUF3584 PF12128.8 gi|55378582|ref|YP_136432.1| - 4.8 4.6 105.3 0.035 11.6 43.3 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF3584) DUF3450 PF11932.8 gi|55378582|ref|YP_136432.1| - 6.6 6.0 98.0 0.28 10.4 7.8 7.0 1 1 5 7 7 7 0 Protein of unknown function (DUF3450) Metallophos_2 PF12850.7 gi|55378583|ref|YP_136433.1| - 2.8e-11 43.9 0.1 6.1e-11 42.8 0.1 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55378583|ref|YP_136433.1| - 1.2e-10 42.2 1.1 1.2e-10 42.2 1.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase T3SSipB PF16535.5 gi|55378584|ref|YP_136434.1| - 0.16 12.4 2.1 0.21 12.1 0.2 1.8 2 0 0 2 2 2 0 Type III cell invasion protein SipB SCAB_CC PF16712.5 gi|55378584|ref|YP_136434.1| - 0.17 11.7 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil regions of plant-specific actin-binding protein OppC_N PF12911.7 gi|55378585|ref|YP_136435.1| - 7 6.7 6.9 11 6.1 6.9 1.5 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C NPV_P10 PF05531.12 gi|55378586|ref|YP_136436.1| - 0.0091 16.4 0.1 0.092 13.2 0.1 2.3 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein XhlA PF10779.9 gi|55378586|ref|YP_136436.1| - 0.016 15.4 2.7 0.13 12.5 0.1 2.8 2 1 1 3 3 3 0 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|55378586|ref|YP_136436.1| - 0.043 14.1 5.2 0.15 12.3 0.9 3.2 1 1 3 4 4 4 0 ABC transporter C-terminal domain BLOC1_2 PF10046.9 gi|55378586|ref|YP_136436.1| - 0.063 13.6 0.1 0.15 12.4 0.0 1.7 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2730 PF10805.8 gi|55378586|ref|YP_136436.1| - 0.079 13.1 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) CCDC53 PF10152.9 gi|55378586|ref|YP_136436.1| - 0.08 13.4 0.6 0.11 13.0 0.6 1.2 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex SKA1 PF07160.12 gi|55378586|ref|YP_136436.1| - 0.098 12.5 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 Osmo_CC PF08946.10 gi|55378586|ref|YP_136436.1| - 0.12 12.6 0.1 0.4 11.0 0.1 1.9 1 0 0 1 1 1 0 Osmosensory transporter coiled coil Baculo_PEP_C PF04513.12 gi|55378586|ref|YP_136436.1| - 0.15 12.1 0.6 0.54 10.3 0.2 1.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus CK2S PF15011.6 gi|55378586|ref|YP_136436.1| - 0.16 11.8 0.4 0.21 11.4 0.4 1.2 1 0 0 1 1 1 0 Casein Kinase 2 substrate TBK1_CCD1 PF18394.1 gi|55378586|ref|YP_136436.1| - 0.17 11.4 0.0 0.22 11.1 0.0 1.1 1 0 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 DUF1515 PF07439.11 gi|55378586|ref|YP_136436.1| - 0.21 11.6 1.8 2.7 8.0 1.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Spc7 PF08317.11 gi|55378586|ref|YP_136436.1| - 0.21 10.4 0.4 0.28 10.0 0.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4407 PF14362.6 gi|55378586|ref|YP_136436.1| - 3.5 6.9 7.1 5.1 6.4 7.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) UPF0184 PF03670.13 gi|55378586|ref|YP_136436.1| - 4.3 7.8 6.6 1.9 8.9 0.1 2.9 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0184) ABM PF03992.16 gi|55378587|ref|YP_136437.1| - 0.0019 18.3 0.0 0.0034 17.4 0.0 1.5 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase T2SSE PF00437.20 gi|55378589|ref|YP_136439.1| - 3.9e-19 68.8 0.1 5.8e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|55378589|ref|YP_136439.1| - 4.2e-06 27.2 0.4 8.3e-06 26.3 0.4 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|55378589|ref|YP_136439.1| - 0.022 14.5 0.0 0.065 13.0 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|55378589|ref|YP_136439.1| - 0.027 14.7 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55378589|ref|YP_136439.1| - 0.031 14.8 0.0 0.041 14.4 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|55378589|ref|YP_136439.1| - 0.05 13.3 0.5 0.12 12.1 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|55378589|ref|YP_136439.1| - 0.063 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_27 PF13514.6 gi|55378589|ref|YP_136439.1| - 0.082 12.5 0.0 0.27 10.8 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|55378589|ref|YP_136439.1| - 0.1 12.1 0.4 0.19 11.3 0.4 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|55378589|ref|YP_136439.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|55378589|ref|YP_136439.1| - 0.17 11.9 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Hexapep_loop PF18776.1 gi|55378590|ref|YP_136440.1| - 2.6 7.7 5.0 0.34 10.6 0.3 1.9 2 0 0 2 2 2 0 Hexapeptide repeat including loop DUF2850 PF11012.8 gi|55378591|ref|YP_136441.1| - 0.0014 18.9 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2850) PsaM PF07465.13 gi|55378592|ref|YP_136442.1| - 0.16 11.7 0.9 0.28 10.9 0.9 1.4 1 0 0 1 1 1 0 Photosystem I protein M (PsaM) SBP_bac_3 PF00497.20 gi|55378593|ref|YP_136443.1| - 0.017 14.6 0.8 0.017 14.5 0.8 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DUF1731 PF08338.11 gi|55378596|ref|YP_136446.1| - 0.00017 21.4 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) DHH PF01368.20 gi|55378597|ref|YP_136447.1| - 1e-11 45.0 0.0 1.6e-11 44.4 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|55378597|ref|YP_136447.1| - 1.2e-09 38.7 0.6 2.1e-09 37.9 0.6 1.4 1 0 0 1 1 1 1 DHHA1 domain Aldo_ket_red PF00248.21 gi|55378598|ref|YP_136448.1| - 2.8e-31 108.8 0.0 3.6e-24 85.5 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family DUF2322 PF10084.9 gi|55378598|ref|YP_136448.1| - 0.055 13.5 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) DUF1451 PF07295.11 gi|55378599|ref|YP_136449.1| - 0.0074 16.3 0.1 0.0084 16.2 0.1 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain FYVE PF01363.21 gi|55378599|ref|YP_136449.1| - 0.0075 16.4 0.2 0.0092 16.1 0.2 1.1 1 0 0 1 1 1 1 FYVE zinc finger zf-TFIIB PF13453.6 gi|55378599|ref|YP_136449.1| - 0.031 13.6 2.9 0.06 12.7 2.9 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|55378599|ref|YP_136449.1| - 0.032 14.2 0.2 0.039 13.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|55378599|ref|YP_136449.1| - 0.057 13.3 1.2 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_9 PF14369.6 gi|55378599|ref|YP_136449.1| - 0.083 13.2 3.5 0.3 11.4 3.7 1.7 1 1 1 2 2 2 0 zinc-ribbon Prok-RING_1 PF14446.6 gi|55378599|ref|YP_136449.1| - 0.2 11.6 3.8 0.34 10.9 3.8 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Anti-TRAP PF15777.5 gi|55378599|ref|YP_136449.1| - 0.23 11.5 2.3 2.2 8.3 2.8 1.9 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-ACC PF17848.1 gi|55378599|ref|YP_136449.1| - 7.9 6.7 8.5 18 5.5 0.1 2.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain MFS_1 PF07690.16 gi|55378600|ref|YP_136450.1| - 1.9e-26 92.8 52.0 1.5e-23 83.3 34.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|55378600|ref|YP_136450.1| - 0.005 15.7 12.6 0.0044 15.9 5.3 2.1 1 1 1 2 2 2 2 MFS_1 like family Phage-tail_1 PF09097.10 gi|55378600|ref|YP_136450.1| - 0.023 14.5 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Baseplate structural protein, domain 1 DUF1616 PF07760.11 gi|55378600|ref|YP_136450.1| - 0.72 9.2 4.9 0.1 12.0 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) MFS_4 PF06779.14 gi|55378600|ref|YP_136450.1| - 6.8 5.9 38.8 8.4 5.6 38.8 1.1 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB PALP PF00291.25 gi|55378601|ref|YP_136451.1| - 0.11 11.9 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme NUDIX PF00293.28 gi|55378602|ref|YP_136452.1| - 2e-13 50.5 0.0 3.2e-13 49.9 0.0 1.4 1 0 0 1 1 1 1 NUDIX domain DUF1569 PF07606.11 gi|55378602|ref|YP_136452.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1569) Ribosomal_L3 PF00297.22 gi|55378602|ref|YP_136452.1| - 0.24 10.4 0.0 8.3 5.3 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein L3 Bac_luciferase PF00296.20 gi|55378603|ref|YP_136453.1| - 0.0024 17.3 1.1 0.0067 15.9 1.1 1.8 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.24 gi|55378604|ref|YP_136454.1| - 1.7e-53 182.5 11.0 2.1e-53 182.2 11.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55378604|ref|YP_136454.1| - 4e-05 23.0 4.3 0.0028 17.0 1.2 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|55378604|ref|YP_136454.1| - 0.00013 22.1 7.3 0.00014 22.0 4.7 2.4 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|55378604|ref|YP_136454.1| - 0.00015 20.6 1.6 0.0045 15.7 0.9 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|55378604|ref|YP_136454.1| - 0.00018 22.0 2.0 0.00018 22.0 2.0 2.9 2 2 2 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|55378604|ref|YP_136454.1| - 0.00023 20.6 1.4 0.00023 20.6 1.4 1.8 3 0 0 3 3 3 1 FAD binding domain NAD_binding_7 PF13241.6 gi|55378604|ref|YP_136454.1| - 0.00036 20.9 0.6 0.0007 20.0 0.1 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|55378604|ref|YP_136454.1| - 0.0025 17.0 8.6 0.0039 16.3 8.6 1.4 1 1 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|55378604|ref|YP_136454.1| - 0.0062 16.5 2.4 0.026 14.5 0.4 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|55378604|ref|YP_136454.1| - 0.01 15.1 1.4 0.021 14.1 0.4 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|55378604|ref|YP_136454.1| - 0.012 15.5 1.4 0.018 14.9 0.5 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|55378604|ref|YP_136454.1| - 0.018 14.4 2.6 0.024 14.0 2.6 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|55378604|ref|YP_136454.1| - 0.021 14.1 0.2 0.035 13.4 0.2 1.4 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|55378604|ref|YP_136454.1| - 0.04 13.0 1.3 0.055 12.5 0.6 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|55378604|ref|YP_136454.1| - 0.046 13.0 1.3 2.8 7.1 0.1 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|55378604|ref|YP_136454.1| - 0.062 12.6 1.4 0.13 11.5 1.4 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|55378604|ref|YP_136454.1| - 0.095 12.3 0.2 0.2 11.2 0.2 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HTH_Tnp_IS1 PF12759.7 gi|55378604|ref|YP_136454.1| - 0.18 11.4 0.0 0.45 10.2 0.0 1.6 1 0 0 1 1 1 0 InsA C-terminal domain Trp_halogenase PF04820.14 gi|55378604|ref|YP_136454.1| - 0.23 10.3 1.8 0.39 9.5 1.8 1.3 1 0 0 1 1 1 0 Tryptophan halogenase ApbA PF02558.16 gi|55378604|ref|YP_136454.1| - 0.25 11.0 3.5 0.72 9.5 2.1 2.6 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HSP20 PF00011.21 gi|55378605|ref|YP_136455.1| - 2.6e-08 33.9 0.0 4.7e-08 33.1 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|55378605|ref|YP_136455.1| - 0.084 12.4 0.1 0.37 10.4 0.1 2.1 1 1 0 1 1 1 0 HSP20-like domain found in ArsA DUF429 PF04250.13 gi|55378606|ref|YP_136456.1| - 1.3e-08 34.9 0.6 2e-08 34.3 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF429) ABC_membrane PF00664.23 gi|55378607|ref|YP_136457.1| - 2.4e-39 135.7 1.5 3e-39 135.3 1.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|55378607|ref|YP_136457.1| - 1.7e-32 112.8 0.0 3.2e-32 111.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|55378607|ref|YP_136457.1| - 0.00018 21.0 0.0 0.00052 19.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|55378607|ref|YP_136457.1| - 0.00023 20.5 0.4 0.00062 19.1 0.1 1.8 2 0 0 2 2 2 1 Zeta toxin SLATT_1 PF18181.1 gi|55378607|ref|YP_136457.1| - 0.0061 16.5 0.1 0.5 10.3 0.0 2.6 2 0 0 2 2 2 1 SMODS and SLOG-associating 2TM effector domain 1 AAA_24 PF13479.6 gi|55378607|ref|YP_136457.1| - 0.034 13.9 0.1 0.099 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|55378607|ref|YP_136457.1| - 0.082 12.5 2.4 0.22 11.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|55378607|ref|YP_136457.1| - 0.091 12.5 0.1 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.14 gi|55378607|ref|YP_136457.1| - 0.11 11.7 0.0 1.7 7.8 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain RsgA_GTPase PF03193.16 gi|55378607|ref|YP_136457.1| - 0.13 12.1 0.0 0.47 10.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_22 PF13401.6 gi|55378607|ref|YP_136457.1| - 0.2 11.9 0.2 1.5 9.1 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55378607|ref|YP_136457.1| - 0.81 10.0 4.6 1.7 9.0 2.9 2.4 2 1 0 2 2 2 0 AAA ATPase domain Na_H_antiporter PF03553.14 gi|55378608|ref|YP_136458.1| - 7.1e-61 206.1 36.4 5.7e-55 186.7 18.1 2.0 1 1 1 2 2 2 2 Na+/H+ antiporter family Radical_SAM PF04055.21 gi|55378610|ref|YP_136460.1| - 2.1e-15 57.5 0.0 3.3e-14 53.6 0.0 2.7 2 1 0 2 2 2 1 Radical SAM superfamily HHH PF00633.23 gi|55378610|ref|YP_136460.1| - 4.6e-05 23.1 0.0 0.00016 21.4 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|55378610|ref|YP_136460.1| - 9.3e-05 22.6 0.0 0.00023 21.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|55378610|ref|YP_136460.1| - 0.00092 19.2 0.1 0.0033 17.4 0.0 2.0 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.6 gi|55378610|ref|YP_136460.1| - 0.036 14.7 0.0 0.1 13.2 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|55378610|ref|YP_136460.1| - 0.057 13.5 0.0 0.27 11.3 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|55378610|ref|YP_136460.1| - 0.08 13.2 0.0 1.2 9.5 0.0 2.7 3 0 0 3 3 3 0 Pathogenicity locus LPG_synthase_TM PF03706.13 gi|55378611|ref|YP_136461.1| - 3.1e-34 118.9 33.4 4.3e-34 118.4 33.4 1.2 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|55378611|ref|YP_136461.1| - 4.4e-26 91.7 0.1 6.2e-26 91.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|55378611|ref|YP_136461.1| - 1.6e-08 34.7 0.0 2.8e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|55378611|ref|YP_136461.1| - 0.0022 17.5 0.1 0.0032 17.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|55378611|ref|YP_136461.1| - 0.0037 17.7 0.2 0.0068 16.9 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 TFIIB PF00382.19 gi|55378612|ref|YP_136462.1| - 6e-39 131.9 0.7 1.2e-18 66.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55378612|ref|YP_136462.1| - 1.7e-15 56.2 4.5 2.2e-15 55.9 3.5 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|55378612|ref|YP_136462.1| - 0.054 13.0 2.8 0.31 10.6 0.0 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 Anti-TRAP PF15777.5 gi|55378612|ref|YP_136462.1| - 0.061 13.3 0.4 0.11 12.5 0.4 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Cyclin_C PF02984.19 gi|55378612|ref|YP_136462.1| - 0.063 13.4 0.0 0.82 9.8 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|55378612|ref|YP_136462.1| - 0.13 11.7 1.1 0.29 10.6 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 A2L_zn_ribbon PF08792.10 gi|55378612|ref|YP_136462.1| - 0.15 11.8 0.7 0.28 10.9 0.7 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55378612|ref|YP_136462.1| - 0.21 11.6 1.3 0.44 10.5 1.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nop25 PF09805.9 gi|55378612|ref|YP_136462.1| - 1.8 9.0 8.3 2.2 8.8 0.2 2.7 3 0 0 3 3 3 0 Nucleolar protein 12 (25kDa) Zn-ribbon_8 PF09723.10 gi|55378612|ref|YP_136462.1| - 2.5 8.3 6.0 6.3 7.0 1.1 2.4 1 1 2 3 3 3 0 Zinc ribbon domain N6_N4_Mtase PF01555.18 gi|55378613|ref|YP_136463.1| - 1.6e-31 109.8 0.0 2.1e-31 109.4 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|55378613|ref|YP_136463.1| - 3.6e-06 27.5 0.0 0.81 10.4 0.0 3.4 3 1 0 3 3 3 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378613|ref|YP_136463.1| - 0.00012 22.7 0.1 0.52 11.1 0.0 3.8 3 1 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.18 gi|55378613|ref|YP_136463.1| - 0.0019 17.9 0.1 1.2 8.8 0.0 2.4 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|55378613|ref|YP_136463.1| - 0.049 13.4 0.0 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain DHquinase_I PF01487.15 gi|55378614|ref|YP_136464.1| - 1.8e-43 149.4 0.0 2e-43 149.3 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase zinc_ribbon_2 PF13240.6 gi|55378615|ref|YP_136465.1| - 1.3e-05 24.7 1.0 2e-05 24.1 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|55378615|ref|YP_136465.1| - 2e-05 24.5 1.7 2.8e-05 24.1 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.16 gi|55378615|ref|YP_136465.1| - 4.6e-05 23.7 5.3 6.9e-05 23.1 5.3 1.3 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.6 gi|55378615|ref|YP_136465.1| - 0.00095 18.5 1.0 0.0015 17.8 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|55378615|ref|YP_136465.1| - 0.0021 18.8 0.2 0.0029 18.3 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbon family DUF4131 PF13567.6 gi|55378615|ref|YP_136465.1| - 0.0071 16.0 0.3 0.009 15.7 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF2614 PF11023.8 gi|55378615|ref|YP_136465.1| - 0.0081 16.2 1.2 0.45 10.6 0.0 2.1 2 0 0 2 2 2 1 Zinc-ribbon containing domain DUF2628 PF10947.8 gi|55378615|ref|YP_136465.1| - 0.0092 16.3 4.7 0.013 15.8 4.7 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2628) NinF PF05810.12 gi|55378615|ref|YP_136465.1| - 0.057 13.3 0.2 0.12 12.2 0.2 1.6 1 1 0 1 1 1 0 NinF protein UPF0547 PF10571.9 gi|55378615|ref|YP_136465.1| - 0.061 13.4 0.4 0.1 12.7 0.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|55378615|ref|YP_136465.1| - 0.083 12.9 1.0 0.12 12.4 1.0 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|55378615|ref|YP_136465.1| - 0.11 12.5 1.3 0.16 11.9 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbons DHQS PF01959.16 gi|55378616|ref|YP_136466.1| - 1.1e-142 475.1 3.3 1.3e-142 474.9 3.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|55378616|ref|YP_136466.1| - 0.00043 19.9 0.0 0.019 14.5 0.0 2.2 2 0 0 2 2 2 1 Hint module Hint_2 PF13403.6 gi|55378616|ref|YP_136466.1| - 0.0017 18.6 0.5 0.77 10.1 0.1 2.7 2 0 0 2 2 2 2 Hint domain QRPTase_C PF01729.19 gi|55378616|ref|YP_136466.1| - 0.011 15.5 1.2 0.03 14.1 0.2 2.2 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Peptidase_S31 PF05578.12 gi|55378616|ref|YP_136466.1| - 0.063 12.8 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Pestivirus NS3 polyprotein peptidase S31 ParA PF10609.9 gi|55378617|ref|YP_136467.1| - 1e-19 70.9 0.3 6.1e-19 68.4 0.3 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|55378617|ref|YP_136467.1| - 2.3e-17 63.5 0.0 3.9e-17 62.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55378617|ref|YP_136467.1| - 3.4e-15 56.2 0.0 7e-15 55.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|55378617|ref|YP_136467.1| - 4.2e-11 42.8 0.0 7.4e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|55378617|ref|YP_136467.1| - 9.7e-07 28.3 0.6 1.9e-06 27.3 0.6 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|55378617|ref|YP_136467.1| - 2.2e-05 23.9 0.2 5.2e-05 22.6 0.2 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|55378617|ref|YP_136467.1| - 7.6e-05 22.3 0.0 0.074 12.5 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|55378617|ref|YP_136467.1| - 0.00014 21.7 0.3 0.00092 19.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|55378617|ref|YP_136467.1| - 0.042 13.5 0.3 0.31 10.6 0.1 2.2 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|55378617|ref|YP_136467.1| - 0.062 13.1 0.1 0.094 12.5 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DeoC PF01791.9 gi|55378618|ref|YP_136468.1| - 3.2e-49 167.7 0.2 4e-49 167.4 0.2 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|55378618|ref|YP_136468.1| - 2.5e-05 23.8 0.1 4.3e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.24 gi|55378618|ref|YP_136468.1| - 0.012 15.2 0.3 0.012 15.2 0.3 1.6 2 0 0 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|55378618|ref|YP_136468.1| - 0.014 14.7 0.1 1.1 8.5 0.0 2.6 2 1 0 2 2 2 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|55378618|ref|YP_136468.1| - 0.021 14.0 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) PucR PF07905.11 gi|55378618|ref|YP_136468.1| - 0.031 14.5 0.0 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family ThiG PF05690.14 gi|55378618|ref|YP_136468.1| - 0.05 12.9 1.0 0.079 12.3 0.3 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG RuvA_C PF07499.13 gi|55378618|ref|YP_136468.1| - 0.31 11.5 4.5 0.28 11.6 0.8 2.7 3 0 0 3 3 3 0 RuvA, C-terminal domain Trp_syntA PF00290.20 gi|55378619|ref|YP_136469.1| - 5.9e-85 284.2 0.1 2.5e-84 282.2 0.1 1.7 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|55378619|ref|YP_136469.1| - 0.0002 20.9 0.3 0.016 14.6 0.3 2.2 2 0 0 2 2 2 2 PcrB family His_biosynth PF00977.21 gi|55378619|ref|YP_136469.1| - 0.0012 18.4 0.1 0.0024 17.4 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PALP PF00291.25 gi|55378620|ref|YP_136470.1| - 2.8e-38 132.0 0.2 3.5e-38 131.7 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|55378621|ref|YP_136471.1| - 9e-69 231.5 0.0 1e-68 231.3 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|55378621|ref|YP_136471.1| - 9.4e-06 25.5 0.6 1.8e-05 24.6 0.3 1.6 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain FMN_dh PF01070.18 gi|55378621|ref|YP_136471.1| - 2.2e-05 23.6 3.7 3.9e-05 22.8 2.5 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|55378621|ref|YP_136471.1| - 0.00032 20.2 0.1 0.017 14.6 0.1 2.6 2 1 1 3 3 3 1 Histidine biosynthesis protein NMO PF03060.15 gi|55378621|ref|YP_136471.1| - 0.00047 19.6 7.4 0.0022 17.5 4.2 2.1 1 1 1 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|55378621|ref|YP_136471.1| - 0.00093 18.4 1.3 0.0028 16.9 1.3 2.0 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|55378621|ref|YP_136471.1| - 0.003 16.8 0.1 0.0045 16.2 0.1 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Trp_syntA PF00290.20 gi|55378621|ref|YP_136471.1| - 0.017 14.0 0.0 0.038 12.8 0.0 1.6 1 0 0 1 1 1 0 Tryptophan synthase alpha chain ThiG PF05690.14 gi|55378621|ref|YP_136471.1| - 0.018 14.4 7.3 0.093 12.0 3.1 3.4 1 1 2 3 3 3 0 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|55378621|ref|YP_136471.1| - 0.051 12.6 2.3 0.077 12.0 0.2 1.9 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain BKACE PF05853.12 gi|55378621|ref|YP_136471.1| - 0.057 12.7 0.8 0.1 11.9 0.8 1.5 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme PDZ PF00595.24 gi|55378621|ref|YP_136471.1| - 0.065 13.6 0.1 0.25 11.7 0.0 2.0 2 0 0 2 2 2 0 PDZ domain CoatB PF10389.9 gi|55378621|ref|YP_136471.1| - 0.68 9.8 2.8 7.5 6.5 0.2 2.9 2 0 0 2 2 2 0 Bacteriophage coat protein B Acetyltransf_1 PF00583.25 gi|55378622|ref|YP_136472.1| - 1.4e-09 38.2 0.0 1.8e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55378622|ref|YP_136472.1| - 1.9e-07 31.1 0.0 2.6e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55378622|ref|YP_136472.1| - 8.4e-07 29.3 0.0 1.4e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55378622|ref|YP_136472.1| - 5.4e-05 23.9 0.0 7e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55378622|ref|YP_136472.1| - 0.13 12.4 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MMR_HSR1_C PF08438.10 gi|55378623|ref|YP_136473.1| - 8.2e-28 97.2 0.0 1.4e-27 96.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|55378623|ref|YP_136473.1| - 3.1e-20 72.4 0.0 1.2e-18 67.3 0.0 2.4 1 1 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|55378623|ref|YP_136473.1| - 7.9e-10 38.6 0.0 1.9e-09 37.4 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|55378623|ref|YP_136473.1| - 2.8e-05 23.7 0.0 0.00017 21.2 0.0 2.2 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|55378623|ref|YP_136473.1| - 0.12 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF933) MeaB PF03308.16 gi|55378623|ref|YP_136473.1| - 0.15 11.0 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|55378623|ref|YP_136473.1| - 0.21 11.6 0.0 1 9.4 0.0 2.0 2 0 0 2 2 2 0 Dynamin family Thioredoxin_4 PF13462.6 gi|55378626|ref|YP_136476.1| - 5.3e-15 56.0 0.0 6.7e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55378626|ref|YP_136476.1| - 1.1e-06 29.0 0.0 3.8e-05 24.1 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|55378626|ref|YP_136476.1| - 2.1e-05 24.4 1.2 2.1e-05 24.4 0.5 1.4 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 gi|55378626|ref|YP_136476.1| - 0.012 15.2 1.0 0.024 14.3 0.1 1.7 2 0 0 2 2 2 0 Thioredoxin TAT_signal PF10518.9 gi|55378626|ref|YP_136476.1| - 0.049 13.5 0.2 0.098 12.5 0.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S66 PF02016.15 gi|55378627|ref|YP_136477.1| - 1.6e-25 89.5 0.0 2.4e-25 89.0 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|55378627|ref|YP_136477.1| - 6.7e-25 88.0 0.0 1.3e-24 87.1 0.0 1.5 2 0 0 2 2 2 1 LD-carboxypeptidase C-terminal domain HTH_10 PF04967.12 gi|55378628|ref|YP_136478.1| - 2.8e-12 46.2 0.1 4.3e-12 45.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55378628|ref|YP_136478.1| - 1.2e-09 38.2 5.0 1.2e-09 38.2 5.0 1.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MCRA PF06100.11 gi|55378629|ref|YP_136479.1| - 1e-209 697.4 0.0 1.2e-209 697.3 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 gi|55378629|ref|YP_136479.1| - 1.4e-06 28.4 0.1 3.2e-06 27.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55378629|ref|YP_136479.1| - 0.0015 18.2 0.1 0.011 15.3 0.1 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase DUF21 PF01595.20 gi|55378630|ref|YP_136480.1| - 9.4e-47 159.0 0.9 1.3e-46 158.5 0.9 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|55378630|ref|YP_136480.1| - 7.8e-21 73.9 0.1 2.7e-20 72.2 0.1 2.0 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|55378630|ref|YP_136480.1| - 8.7e-14 51.7 4.7 1.2e-08 35.2 1.8 2.5 2 0 0 2 2 2 2 CBS domain Acetyltransf_17 PF17668.1 gi|55378631|ref|YP_136481.1| - 2e-26 93.1 0.4 4.2e-26 92.0 0.4 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55378631|ref|YP_136481.1| - 2.9e-25 88.8 0.0 8.5e-25 87.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|55378631|ref|YP_136481.1| - 9.6e-14 51.7 0.0 2e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_1 PF00583.25 gi|55378631|ref|YP_136481.1| - 2.4e-06 27.8 0.0 0.0076 16.5 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55378631|ref|YP_136481.1| - 0.00011 22.6 0.1 0.0015 18.9 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|55378631|ref|YP_136481.1| - 0.00027 20.9 0.0 0.0012 18.7 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55378631|ref|YP_136481.1| - 0.0023 18.0 0.1 0.0056 16.8 0.0 1.6 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|55378631|ref|YP_136481.1| - 0.0097 15.9 0.0 0.025 14.6 0.0 1.7 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|55378631|ref|YP_136481.1| - 0.19 11.8 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain BCD PF15461.6 gi|55378632|ref|YP_136482.1| - 1.1e-74 251.3 16.6 1.1e-74 251.3 16.6 1.3 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase Amino_oxidase PF01593.24 gi|55378633|ref|YP_136483.1| - 2.1e-32 113.0 0.1 2.5e-32 112.7 0.1 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|55378633|ref|YP_136483.1| - 9.1e-16 57.9 0.2 2.7e-15 56.4 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55378633|ref|YP_136483.1| - 2.5e-10 40.5 8.6 1.5e-09 37.9 8.6 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|55378633|ref|YP_136483.1| - 6.3e-08 33.1 0.9 2.6e-05 24.7 0.4 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|55378633|ref|YP_136483.1| - 1.3e-07 31.3 0.0 9.6e-07 28.5 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55378633|ref|YP_136483.1| - 3.2e-07 29.9 2.4 0.00011 21.6 0.5 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|55378633|ref|YP_136483.1| - 3e-05 22.9 0.1 0.031 13.0 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|55378633|ref|YP_136483.1| - 0.00011 21.6 0.0 0.5 9.6 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55378633|ref|YP_136483.1| - 0.00012 21.3 2.6 0.00028 20.1 1.6 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|55378633|ref|YP_136483.1| - 0.00029 20.2 0.6 0.00055 19.3 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|55378633|ref|YP_136483.1| - 0.00057 19.1 1.1 0.0009 18.4 1.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|55378633|ref|YP_136483.1| - 0.01 15.1 0.2 0.022 14.0 0.2 1.5 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|55378633|ref|YP_136483.1| - 0.13 11.5 0.1 0.23 10.8 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MCRA PF06100.11 gi|55378633|ref|YP_136483.1| - 0.17 10.7 0.0 0.3 9.8 0.0 1.3 1 0 0 1 1 1 0 MCRA family 3HCDH_N PF02737.18 gi|55378633|ref|YP_136483.1| - 0.18 11.6 0.3 0.33 10.8 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|55378633|ref|YP_136483.1| - 0.19 11.4 0.0 0.99 9.0 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pribosyltran PF00156.27 gi|55378634|ref|YP_136484.1| - 1.3e-16 60.5 1.1 1.9e-16 60.0 1.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|55378634|ref|YP_136484.1| - 0.0012 18.3 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|55378634|ref|YP_136484.1| - 0.017 14.7 0.3 0.036 13.6 0.3 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase DsbB PF02600.16 gi|55378636|ref|YP_136486.1| - 2.7e-07 31.1 3.7 1.2e-06 29.0 3.7 1.8 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Aldo_ket_red PF00248.21 gi|55378637|ref|YP_136487.1| - 1.2e-70 238.1 0.0 1.4e-70 237.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|55378637|ref|YP_136487.1| - 0.026 13.1 0.0 0.039 12.5 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase MFS_1 PF07690.16 gi|55378638|ref|YP_136488.1| - 1.9e-13 50.1 28.1 1.9e-13 50.1 28.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|55378638|ref|YP_136488.1| - 8.1e-05 21.6 0.0 0.00077 18.4 0.0 2.7 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|55378638|ref|YP_136488.1| - 0.004 16.1 2.5 0.004 16.1 2.5 2.9 3 0 0 3 3 3 2 Sugar (and other) transporter HhH-GPD PF00730.25 gi|55378639|ref|YP_136489.1| - 4.9e-20 72.0 0.0 6.6e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|55378639|ref|YP_136489.1| - 0.0003 21.0 7.2 0.00069 19.9 7.2 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|55378639|ref|YP_136489.1| - 0.005 16.7 0.0 0.015 15.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|55378639|ref|YP_136489.1| - 0.016 15.8 0.2 0.42 11.2 0.0 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain DUF732 PF05305.14 gi|55378639|ref|YP_136489.1| - 0.031 14.6 0.7 0.16 12.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF732) DUF2400 PF09674.10 gi|55378639|ref|YP_136489.1| - 0.072 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF5059 PF16502.5 gi|55378640|ref|YP_136490.1| - 1.7e-281 935.5 102.9 1.7e-281 935.5 102.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|55378640|ref|YP_136490.1| - 6.7e-16 58.6 0.1 1.8e-15 57.2 0.1 1.8 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PRTP PF01366.18 gi|55378640|ref|YP_136490.1| - 0.1 10.6 0.3 6.6 4.6 0.2 2.6 3 0 0 3 3 3 0 Herpesvirus processing and transport protein Cytochrom_B562 PF07361.11 gi|55378640|ref|YP_136490.1| - 0.47 11.1 7.7 16 6.2 0.0 4.8 4 0 0 4 4 4 0 Cytochrome b562 SAM_adeno_trans PF01887.16 gi|55378641|ref|YP_136491.1| - 4e-75 252.3 1.6 4.5e-75 252.1 1.6 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|55378642|ref|YP_136492.1| - 4.3e-15 56.1 0.0 9.1e-15 55.1 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|55378642|ref|YP_136492.1| - 0.019 14.6 0.0 0.046 13.4 0.0 1.6 1 1 0 1 1 1 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.13 gi|55378643|ref|YP_136493.1| - 4.4e-35 121.1 4.6 6.8e-35 120.5 4.6 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|55378643|ref|YP_136493.1| - 4.9e-30 104.8 0.0 3.4e-23 82.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|55378643|ref|YP_136493.1| - 6.1e-18 65.0 0.1 7.9e-11 41.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|55378643|ref|YP_136493.1| - 4.3e-16 59.1 0.0 6.9e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|55378643|ref|YP_136493.1| - 6.8e-10 39.1 0.0 0.00093 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|55378643|ref|YP_136493.1| - 5.6e-09 35.9 0.6 1.4e-08 34.7 0.6 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|55378643|ref|YP_136493.1| - 9e-08 31.5 0.1 0.013 14.6 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|55378643|ref|YP_136493.1| - 1.1e-06 29.1 0.0 0.042 14.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|55378643|ref|YP_136493.1| - 1.7e-05 24.9 0.0 0.15 12.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55378643|ref|YP_136493.1| - 3.8e-05 23.5 0.1 0.02 14.7 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|55378643|ref|YP_136493.1| - 0.00014 21.5 0.1 0.00037 20.1 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|55378643|ref|YP_136493.1| - 0.00026 21.3 0.0 0.0045 17.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|55378643|ref|YP_136493.1| - 0.00028 20.8 0.1 0.42 10.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|55378643|ref|YP_136493.1| - 0.00042 19.6 1.7 0.1 11.8 0.0 2.9 4 0 0 4 4 4 1 TIP49 P-loop domain AAA_19 PF13245.6 gi|55378643|ref|YP_136493.1| - 0.00046 20.5 0.0 0.65 10.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|55378643|ref|YP_136493.1| - 0.00097 18.9 0.0 0.073 12.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|55378643|ref|YP_136493.1| - 0.0039 16.2 0.0 0.22 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain T2SSE PF00437.20 gi|55378643|ref|YP_136493.1| - 0.012 14.7 0.0 0.11 11.5 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein PhoH PF02562.16 gi|55378643|ref|YP_136493.1| - 0.014 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|55378643|ref|YP_136493.1| - 0.016 15.3 0.0 0.054 13.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|55378643|ref|YP_136493.1| - 0.02 14.6 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF815 PF05673.13 gi|55378643|ref|YP_136493.1| - 0.021 14.0 0.0 0.044 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|55378643|ref|YP_136493.1| - 0.021 14.9 0.4 6.1 6.9 0.0 3.2 3 0 0 3 3 3 0 AAA domain (Cdc48 subfamily) MCM_lid PF17855.1 gi|55378643|ref|YP_136493.1| - 0.022 15.2 0.4 0.11 12.9 0.0 2.2 1 1 1 2 2 2 0 MCM AAA-lid domain AAA_10 PF12846.7 gi|55378643|ref|YP_136493.1| - 0.022 13.7 0.0 0.089 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain ABC_tran PF00005.27 gi|55378643|ref|YP_136493.1| - 0.03 14.8 0.0 0.086 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|55378643|ref|YP_136493.1| - 0.052 13.9 0.0 0.24 11.8 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain RHH_6 PF16762.5 gi|55378643|ref|YP_136493.1| - 0.085 13.5 0.7 0.92 10.2 0.0 3.0 2 1 1 3 3 2 0 Ribbon-helix-helix domain NACHT PF05729.12 gi|55378643|ref|YP_136493.1| - 0.088 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|55378643|ref|YP_136493.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TrwB_AAD_bind PF10412.9 gi|55378643|ref|YP_136493.1| - 0.14 11.1 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF5345 PF17280.2 gi|55378643|ref|YP_136493.1| - 0.26 11.3 1.7 0.81 9.7 1.7 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5345) CPBP PF02517.16 gi|55378644|ref|YP_136494.1| - 7.8e-09 35.8 7.4 7.8e-09 35.8 7.4 2.3 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease DUF5118 PF17162.4 gi|55378644|ref|YP_136494.1| - 0.0035 17.1 0.0 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5118) DNA_binding_1 PF01035.20 gi|55378645|ref|YP_136495.1| - 1.7e-08 34.5 0.0 2.8e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain GDPD PF03009.17 gi|55378646|ref|YP_136496.1| - 5e-20 72.3 0.3 1.2e-19 71.1 0.3 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|55378646|ref|YP_136496.1| - 0.0078 16.6 0.1 0.026 15.0 0.1 2.0 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family DS PF01916.17 gi|55378647|ref|YP_136497.1| - 2.8e-99 332.0 0.0 3.2e-99 331.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Peptidase_M22 PF00814.25 gi|55378647|ref|YP_136497.1| - 0.14 11.9 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycoprotease family AzlC PF03591.14 gi|55378648|ref|YP_136498.1| - 1.2e-37 129.4 12.8 1.2e-37 129.4 12.8 1.9 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.12 gi|55378649|ref|YP_136499.1| - 1.5e-21 76.4 8.2 1.7e-21 76.2 8.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) SprT-like PF10263.9 gi|55378650|ref|YP_136500.1| - 2.3e-05 24.2 0.1 3.3e-05 23.7 0.1 1.3 1 1 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|55378650|ref|YP_136500.1| - 0.0037 17.5 0.4 0.12 12.6 0.1 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4157) USP7_C2 PF14533.6 gi|55378650|ref|YP_136500.1| - 0.015 15.0 0.0 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-specific protease C-terminal NIF3 PF01784.18 gi|55378651|ref|YP_136501.1| - 6.7e-54 183.1 0.0 7.8e-54 182.9 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 gi|55378651|ref|YP_136501.1| - 0.0064 16.0 0.0 0.014 14.8 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel SelB-wing_2 PF09106.11 gi|55378652|ref|YP_136502.1| - 0.039 14.2 0.0 0.082 13.1 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HNH_5 PF14279.6 gi|55378652|ref|YP_136502.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 HNH endonuclease SWI-SNF_Ssr4 PF08549.10 gi|55378652|ref|YP_136502.1| - 2.5 6.6 12.9 3.1 6.3 12.9 1.1 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) Abhydrolase_6 PF12697.7 gi|55378653|ref|YP_136503.1| - 9.2e-21 75.5 10.1 9.2e-21 75.5 10.1 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|55378653|ref|YP_136503.1| - 1e-17 64.6 0.1 6e-16 58.9 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|55378653|ref|YP_136503.1| - 2.4e-08 33.5 0.0 1.6e-07 30.9 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Amidohydro_1 PF01979.20 gi|55378654|ref|YP_136504.1| - 8.1e-31 107.6 1.7 6.7e-28 98.0 1.7 2.7 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|55378654|ref|YP_136504.1| - 6.3e-10 38.9 0.0 9e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|55378654|ref|YP_136504.1| - 3.6e-07 30.0 7.8 1.7e-05 24.5 3.4 2.3 2 0 0 2 2 2 2 Amidohydrolase family Arginase PF00491.21 gi|55378655|ref|YP_136505.1| - 3.6e-57 194.0 1.9 4.6e-57 193.7 1.9 1.1 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|55378656|ref|YP_136506.1| - 0.00076 19.5 0.0 0.0047 16.9 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain CobD_Cbib PF03186.13 gi|55378657|ref|YP_136507.1| - 4.7e-29 101.5 0.7 5.6e-29 101.2 0.7 1.2 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|55378658|ref|YP_136508.1| - 1.4e-16 61.3 9.7 1.7e-16 61.0 9.7 1.1 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|55378659|ref|YP_136509.1| - 3.2e-18 66.6 0.2 6.2e-18 65.7 0.2 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|55378659|ref|YP_136509.1| - 0.00045 20.2 0.0 0.0018 18.3 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|55378659|ref|YP_136509.1| - 0.00088 19.1 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CofC PF01983.16 gi|55378659|ref|YP_136509.1| - 0.038 13.2 0.0 0.047 12.9 0.0 1.1 1 0 0 1 1 1 0 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|55378659|ref|YP_136509.1| - 0.056 13.0 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase Aminotran_1_2 PF00155.21 gi|55378660|ref|YP_136510.1| - 8.1e-38 130.5 0.0 9.4e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II TerB PF05099.13 gi|55378660|ref|YP_136510.1| - 0.0039 17.2 1.4 0.21 11.5 0.4 2.3 2 0 0 2 2 2 2 Tellurite resistance protein TerB CbiZ PF01955.18 gi|55378661|ref|YP_136511.1| - 4.1e-43 147.7 3.8 4.8e-43 147.5 3.8 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CobA_CobO_BtuR PF02572.15 gi|55378662|ref|YP_136512.1| - 5.5e-52 176.5 0.0 6.3e-52 176.3 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|55378662|ref|YP_136512.1| - 0.15 12.1 0.1 0.19 11.8 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|55378663|ref|YP_136513.1| - 7.1e-45 153.0 0.0 1e-44 152.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|55378663|ref|YP_136513.1| - 4.3e-21 75.3 0.0 7.1e-21 74.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|55378663|ref|YP_136513.1| - 4.2e-18 65.9 0.0 3.7e-17 62.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55378664|ref|YP_136514.1| - 1.7e-17 63.7 0.0 2.7e-17 63.0 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|55378664|ref|YP_136514.1| - 3e-14 53.3 0.0 5.5e-14 52.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|55378664|ref|YP_136514.1| - 3.8e-14 52.7 1.0 3e-07 30.1 0.2 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|55378664|ref|YP_136514.1| - 7.5e-08 32.1 0.0 6.5e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|55378664|ref|YP_136514.1| - 2.2e-07 30.6 0.0 3.5e-07 30.0 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|55378664|ref|YP_136514.1| - 0.00025 20.4 2.1 0.0015 17.9 2.1 1.9 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|55378664|ref|YP_136514.1| - 0.0015 17.8 1.0 0.0028 16.9 0.4 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|55378664|ref|YP_136514.1| - 0.005 16.7 0.2 0.02 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|55378664|ref|YP_136514.1| - 0.017 14.4 0.2 0.037 13.3 0.2 1.5 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.14 gi|55378664|ref|YP_136514.1| - 0.02 14.1 0.1 0.031 13.4 0.1 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_30 PF13604.6 gi|55378664|ref|YP_136514.1| - 0.11 12.3 0.1 0.11 12.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|55378664|ref|YP_136514.1| - 0.41 10.2 2.8 0.76 9.3 2.8 1.6 1 1 0 1 1 1 0 AAA domain HTH_11 PF08279.12 gi|55378666|ref|YP_136516.1| - 1.4e-06 28.1 0.0 1.8e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.11 gi|55378666|ref|YP_136516.1| - 3.4e-05 23.3 0.0 4.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_20 PF12840.7 gi|55378666|ref|YP_136516.1| - 7.9e-05 22.6 0.0 9.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|55378666|ref|YP_136516.1| - 0.0012 18.9 0.0 0.0055 16.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|55378666|ref|YP_136516.1| - 0.0037 16.8 0.0 0.0064 16.0 0.0 1.5 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|55378666|ref|YP_136516.1| - 0.0085 15.9 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain SgrR_N PF12793.7 gi|55378666|ref|YP_136516.1| - 0.011 15.9 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_Crp_2 PF13545.6 gi|55378666|ref|YP_136516.1| - 0.013 15.5 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55378666|ref|YP_136516.1| - 0.057 13.3 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_7 PF02796.15 gi|55378666|ref|YP_136516.1| - 0.057 13.5 0.0 0.09 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.11 gi|55378666|ref|YP_136516.1| - 0.068 13.2 0.1 0.19 11.8 0.0 1.6 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.7 gi|55378666|ref|YP_136516.1| - 0.072 13.0 0.0 0.093 12.6 0.0 1.2 1 0 0 1 1 1 0 MarR family SelB-wing_3 PF09107.11 gi|55378666|ref|YP_136516.1| - 0.078 12.6 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_30 PF13556.6 gi|55378666|ref|YP_136516.1| - 0.083 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 gi|55378666|ref|YP_136516.1| - 0.12 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dimerisation PF08100.11 gi|55378666|ref|YP_136516.1| - 0.18 11.9 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain TrmB PF01978.19 gi|55378666|ref|YP_136516.1| - 0.18 11.7 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55378667|ref|YP_136517.1| - 1.7e-06 27.8 0.1 3.9e-06 26.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|55378667|ref|YP_136517.1| - 0.0044 17.5 0.0 0.0097 16.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|55378667|ref|YP_136517.1| - 0.007 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|55378667|ref|YP_136517.1| - 0.05 13.5 0.0 0.51 10.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|55378667|ref|YP_136517.1| - 0.072 12.9 0.0 0.22 11.3 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain FAD_binding_7 PF03441.14 gi|55378668|ref|YP_136518.1| - 3.7e-60 202.9 0.9 5.3e-60 202.4 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|55378668|ref|YP_136518.1| - 5.1e-21 75.4 0.1 2.5e-20 73.1 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase TAT_signal PF10518.9 gi|55378669|ref|YP_136519.1| - 0.15 12.0 0.6 0.15 12.0 0.6 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF4244 PF14029.6 gi|55378672|ref|YP_136522.1| - 0.88 9.1 6.8 0.24 10.8 3.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) T2SSF PF00482.23 gi|55378674|ref|YP_136524.1| - 1.8e-21 76.4 6.8 2.8e-12 46.7 0.2 2.5 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|55378675|ref|YP_136525.1| - 2.2e-28 99.1 0.1 4.3e-28 98.1 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|55378675|ref|YP_136525.1| - 0.00023 21.7 0.0 0.00039 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55378675|ref|YP_136525.1| - 0.002 17.8 0.0 0.0043 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|55378675|ref|YP_136525.1| - 0.044 13.7 0.0 0.083 12.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|55378675|ref|YP_136525.1| - 0.052 13.1 0.0 0.087 12.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|55378675|ref|YP_136525.1| - 0.077 13.2 0.2 0.28 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55378675|ref|YP_136525.1| - 0.13 12.8 0.0 0.33 11.5 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|55378675|ref|YP_136525.1| - 0.14 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|55378675|ref|YP_136525.1| - 0.17 11.8 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase TsaE PF02367.17 gi|55378675|ref|YP_136525.1| - 0.19 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE UDPG_MGDP_dh PF00984.19 gi|55378675|ref|YP_136525.1| - 0.22 11.8 0.0 0.58 10.4 0.0 1.7 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain TAT_signal PF10518.9 gi|55378676|ref|YP_136526.1| - 0.0021 17.8 2.9 0.0021 17.8 2.9 1.5 1 1 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF5420 PF17457.2 gi|55378676|ref|YP_136526.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5420) HTH_10 PF04967.12 gi|55378677|ref|YP_136527.1| - 7.8e-19 67.2 0.1 1.3e-18 66.6 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55378677|ref|YP_136527.1| - 0.00024 21.0 0.4 0.0004 20.3 0.4 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|55378677|ref|YP_136527.1| - 0.0015 18.4 0.1 0.0039 17.1 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|55378677|ref|YP_136527.1| - 0.018 14.6 0.0 0.039 13.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|55378677|ref|YP_136527.1| - 0.037 14.3 0.0 0.075 13.3 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like adh_short PF00106.25 gi|55378678|ref|YP_136528.1| - 2e-60 203.6 1.1 2.4e-60 203.4 1.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55378678|ref|YP_136528.1| - 7.3e-49 166.4 1.2 9.1e-49 166.1 1.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55378678|ref|YP_136528.1| - 2.7e-19 69.8 1.0 3.6e-19 69.4 1.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55378678|ref|YP_136528.1| - 3.9e-05 23.2 1.0 0.00025 20.6 0.4 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family PSK_trans_fac PF07704.11 gi|55378678|ref|YP_136528.1| - 0.0088 16.8 1.9 0.0088 16.8 1.9 2.0 2 0 0 2 2 2 1 Rv0623-like transcription factor HEM4 PF02602.15 gi|55378678|ref|YP_136528.1| - 0.013 14.9 0.1 0.025 13.9 0.1 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD THF_DHG_CYH_C PF02882.19 gi|55378678|ref|YP_136528.1| - 0.018 14.4 0.1 0.035 13.4 0.1 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GDP_Man_Dehyd PF16363.5 gi|55378678|ref|YP_136528.1| - 0.11 11.8 0.1 0.24 10.8 0.1 1.7 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase DAO PF01266.24 gi|55378679|ref|YP_136529.1| - 3.1e-57 194.8 6.4 3.5e-57 194.6 6.4 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|55378679|ref|YP_136529.1| - 7.1e-13 48.5 0.3 9.9e-13 48.0 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|55378679|ref|YP_136529.1| - 1.4e-11 44.1 5.5 2e-11 43.6 5.5 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55378679|ref|YP_136529.1| - 3.1e-07 29.9 2.0 0.00061 19.1 0.4 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|55378679|ref|YP_136529.1| - 8.8e-05 21.9 1.9 0.036 13.3 0.7 3.2 3 1 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.7 gi|55378679|ref|YP_136529.1| - 0.00025 20.5 10.2 0.001 18.5 10.2 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|55378679|ref|YP_136529.1| - 0.00044 20.8 0.3 0.0096 16.5 0.6 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|55378679|ref|YP_136529.1| - 0.0017 17.1 0.5 0.38 9.4 0.4 2.1 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|55378679|ref|YP_136529.1| - 0.0026 17.9 2.8 0.014 15.6 2.7 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|55378679|ref|YP_136529.1| - 0.0041 17.5 0.1 0.017 15.5 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|55378679|ref|YP_136529.1| - 0.0051 16.1 0.6 0.24 10.6 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|55378679|ref|YP_136529.1| - 0.0052 15.9 5.1 0.7 8.9 0.9 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|55378679|ref|YP_136529.1| - 0.0061 16.5 0.2 0.014 15.3 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|55378679|ref|YP_136529.1| - 0.01 15.0 1.8 0.4 9.7 0.6 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A ApbA PF02558.16 gi|55378679|ref|YP_136529.1| - 0.026 14.2 0.4 0.046 13.4 0.4 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.14 gi|55378679|ref|YP_136529.1| - 0.082 11.7 2.9 4 6.2 0.6 2.1 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 gi|55378679|ref|YP_136529.1| - 0.11 12.7 0.3 0.3 11.4 0.3 1.7 1 0 0 1 1 1 0 TrkA-N domain PALP PF00291.25 gi|55378679|ref|YP_136529.1| - 0.27 10.6 3.1 0.31 10.4 0.5 2.0 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme NAD_binding_9 PF13454.6 gi|55378679|ref|YP_136529.1| - 0.73 9.8 4.1 2.9 7.8 0.6 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding IF-2B PF01008.17 gi|55378680|ref|YP_136530.1| - 5.3e-44 150.5 0.0 7.5e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.22 gi|55378680|ref|YP_136530.1| - 0.031 14.2 0.1 0.16 11.9 0.1 2.1 1 1 1 2 2 2 0 DeoR C terminal sensor domain eIF-3_zeta PF05091.12 gi|55378680|ref|YP_136530.1| - 0.034 13.1 0.4 0.045 12.7 0.4 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Baculo_F PF12259.8 gi|55378680|ref|YP_136530.1| - 0.052 12.1 0.2 0.066 11.7 0.2 1.1 1 0 0 1 1 1 0 Baculovirus F protein INCA1 PF15142.6 gi|55378680|ref|YP_136530.1| - 0.084 12.9 0.2 0.13 12.2 0.2 1.3 1 0 0 1 1 1 0 INCA1 Syntaxin_2 PF14523.6 gi|55378680|ref|YP_136530.1| - 0.11 12.8 1.0 0.7 10.3 1.0 2.0 1 1 1 2 2 2 0 Syntaxin-like protein PSK_trans_fac PF07704.11 gi|55378680|ref|YP_136530.1| - 2.7 8.8 9.5 5.5 7.8 0.0 3.2 2 1 1 3 3 3 0 Rv0623-like transcription factor DUF883 PF05957.13 gi|55378680|ref|YP_136530.1| - 5.6 7.6 7.8 1.8 9.2 2.0 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Glyco_hydro_77 PF02446.17 gi|55378681|ref|YP_136531.1| - 1.2e-149 499.2 0.0 1.4e-149 498.9 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Glycos_transf_1 PF00534.20 gi|55378682|ref|YP_136532.1| - 3.2e-26 91.9 0.0 5.4e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|55378682|ref|YP_136532.1| - 8e-24 84.6 0.0 1.5e-23 83.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|55378682|ref|YP_136532.1| - 1.2e-14 54.7 0.0 2.3e-14 53.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|55378682|ref|YP_136532.1| - 5.5e-10 39.9 0.0 9.2e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|55378682|ref|YP_136532.1| - 0.001 18.8 0.0 0.29 10.8 0.0 2.8 1 1 1 2 2 2 2 Starch synthase catalytic domain NTP_transferase PF00483.23 gi|55378684|ref|YP_136534.1| - 4.2e-37 128.1 0.0 5.3e-37 127.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55378684|ref|YP_136534.1| - 3.2e-08 34.1 0.0 4e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|55378684|ref|YP_136534.1| - 0.095 12.5 3.9 0.2 11.4 0.0 2.8 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Glucodextran_N PF09137.11 gi|55378685|ref|YP_136535.1| - 7.7e-74 248.6 1.0 1.6e-73 247.5 1.0 1.5 1 0 0 1 1 1 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.21 gi|55378685|ref|YP_136535.1| - 9.3e-36 123.6 4.4 1.5e-22 80.1 0.0 5.3 3 3 1 4 4 4 4 Glycosyl hydrolases family 15 TED_complement PF07678.14 gi|55378685|ref|YP_136535.1| - 0.11 11.5 0.0 1.8 7.5 0.0 2.2 2 0 0 2 2 2 0 A-macroglobulin TED domain SBBP PF06739.11 gi|55378685|ref|YP_136535.1| - 0.4 10.7 3.2 23 5.1 0.0 3.3 3 0 0 3 3 3 0 Beta-propeller repeat Alpha-amylase PF00128.24 gi|55378686|ref|YP_136536.1| - 3.4e-45 155.1 0.1 9.7e-34 117.4 0.1 2.6 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.18 gi|55378686|ref|YP_136536.1| - 9.3e-06 26.0 0.0 3.3e-05 24.3 0.0 2.0 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Malt_amylase_C PF16657.5 gi|55378686|ref|YP_136536.1| - 1.7e-05 24.8 0.0 3.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|55378686|ref|YP_136536.1| - 0.00053 20.3 0.2 0.0032 17.7 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Radical_SAM PF04055.21 gi|55378686|ref|YP_136536.1| - 0.013 15.9 0.0 0.85 10.0 0.0 2.6 2 1 0 2 2 2 0 Radical SAM superfamily Glyco_hydro_42C PF08533.10 gi|55378686|ref|YP_136536.1| - 0.066 12.9 0.0 0.26 11.0 0.0 2.2 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain IclR PF01614.18 gi|55378688|ref|YP_136538.1| - 6.5e-31 106.8 0.1 9e-31 106.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55378688|ref|YP_136538.1| - 9.6e-06 25.3 0.1 3.5e-05 23.5 0.1 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|55378688|ref|YP_136538.1| - 0.0004 20.2 0.1 0.00079 19.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55378688|ref|YP_136538.1| - 0.00072 19.6 0.1 0.0018 18.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|55378688|ref|YP_136538.1| - 0.0013 18.6 0.3 0.0077 16.1 0.0 2.4 3 0 0 3 3 3 1 MarR family TrmB PF01978.19 gi|55378688|ref|YP_136538.1| - 0.0023 17.8 0.0 0.0053 16.6 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|55378688|ref|YP_136538.1| - 0.018 15.0 0.0 0.045 13.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family BLACT_WH PF17778.1 gi|55378688|ref|YP_136538.1| - 0.021 14.8 0.0 0.058 13.4 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain MarR_2 PF12802.7 gi|55378688|ref|YP_136538.1| - 0.07 13.0 0.0 0.28 11.1 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|55378688|ref|YP_136538.1| - 0.13 12.2 0.0 0.36 10.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain HpcH_HpaI PF03328.14 gi|55378689|ref|YP_136539.1| - 2e-08 33.7 0.0 4.8e-08 32.4 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Glyoxalase PF00903.25 gi|55378690|ref|YP_136540.1| - 2.2e-17 63.4 0.4 2.6e-17 63.2 0.4 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|55378690|ref|YP_136540.1| - 1.8e-12 47.5 0.2 2.2e-10 40.8 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|55378690|ref|YP_136540.1| - 4.2e-08 33.9 0.8 5e-08 33.7 0.8 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|55378690|ref|YP_136540.1| - 0.00011 22.3 0.4 0.02 15.0 0.5 2.1 1 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|55378690|ref|YP_136540.1| - 0.0038 17.2 0.0 0.006 16.5 0.0 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Acetyltransf_7 PF13508.7 gi|55378690|ref|YP_136540.1| - 0.15 12.5 0.0 0.46 11.0 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FAD-oxidase_C PF02913.19 gi|55378691|ref|YP_136541.1| - 8e-60 202.6 0.9 1.6e-59 201.6 0.3 1.8 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|55378691|ref|YP_136541.1| - 1.6e-37 128.4 0.5 3.5e-37 127.2 0.2 1.8 2 0 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.6 gi|55378691|ref|YP_136541.1| - 1.6e-10 41.4 4.0 2.9e-10 40.5 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|55378691|ref|YP_136541.1| - 2.6e-10 40.6 4.5 5.3e-10 39.6 4.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|55378691|ref|YP_136541.1| - 9.5e-08 32.2 0.0 2.3e-05 24.5 0.0 2.9 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|55378691|ref|YP_136541.1| - 7.5e-05 22.8 4.8 0.029 14.5 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55378691|ref|YP_136541.1| - 0.0009 19.8 4.8 0.0019 18.7 4.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55378691|ref|YP_136541.1| - 0.004 17.3 5.9 0.016 15.3 6.2 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|55378691|ref|YP_136541.1| - 0.021 15.0 4.2 0.059 13.5 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|55378691|ref|YP_136541.1| - 0.04 13.7 13.1 0.26 11.2 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|55378691|ref|YP_136541.1| - 0.1 12.8 0.2 0.33 11.2 0.2 1.8 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|55378691|ref|YP_136541.1| - 0.1 13.5 3.4 0.25 12.3 3.4 1.7 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|55378691|ref|YP_136541.1| - 0.13 12.8 12.6 0.2 12.2 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|55378691|ref|YP_136541.1| - 0.14 12.3 12.1 1.1 9.5 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|55378691|ref|YP_136541.1| - 3.7 7.8 13.0 1.3 9.2 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF362 PF04015.12 gi|55378692|ref|YP_136542.1| - 3.4e-06 27.5 0.0 4.9e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|55378692|ref|YP_136542.1| - 3.9e-05 22.9 0.5 6.5e-05 22.2 0.5 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain AraC_binding_2 PF14525.6 gi|55378692|ref|YP_136542.1| - 0.0067 16.1 0.1 0.019 14.6 0.1 1.8 1 0 0 1 1 1 1 AraC-binding-like domain Beta-lactamase PF00144.24 gi|55378693|ref|YP_136543.1| - 6.2e-73 245.9 1.9 7.6e-73 245.6 1.9 1.0 1 0 0 1 1 1 1 Beta-lactamase IclR PF01614.18 gi|55378694|ref|YP_136544.1| - 1.5e-33 115.4 0.0 2.7e-33 114.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|55378694|ref|YP_136544.1| - 1.2e-09 37.8 0.0 3e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55378694|ref|YP_136544.1| - 1.5e-08 34.1 0.0 3.7e-08 32.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55378694|ref|YP_136544.1| - 9.8e-08 32.0 0.1 3.4e-06 27.0 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55378694|ref|YP_136544.1| - 3.3e-07 30.1 0.0 1.4e-06 28.0 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|55378694|ref|YP_136544.1| - 4.2e-07 29.7 0.0 1.7e-06 27.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|55378694|ref|YP_136544.1| - 3.2e-05 23.8 0.0 6.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55378694|ref|YP_136544.1| - 0.00076 19.3 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|55378694|ref|YP_136544.1| - 0.00098 19.3 0.0 0.018 15.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|55378694|ref|YP_136544.1| - 0.0016 18.2 0.0 0.0044 16.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.6 gi|55378694|ref|YP_136544.1| - 0.0023 18.4 0.2 0.012 16.1 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|55378694|ref|YP_136544.1| - 0.0083 16.0 0.0 0.04 13.9 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.15 gi|55378694|ref|YP_136544.1| - 0.0091 16.1 0.0 0.024 14.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_40 PF14493.6 gi|55378694|ref|YP_136544.1| - 0.012 16.1 0.0 0.034 14.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|55378694|ref|YP_136544.1| - 0.017 15.1 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|55378694|ref|YP_136544.1| - 0.018 15.1 0.0 0.047 13.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix TetR_N PF00440.23 gi|55378694|ref|YP_136544.1| - 0.018 14.8 0.6 0.061 13.1 0.2 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF3489 PF11994.8 gi|55378694|ref|YP_136544.1| - 0.019 15.0 0.2 0.13 12.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3489) Acyl-CoA_dh_1 PF00441.24 gi|55378695|ref|YP_136545.1| - 1.5e-31 109.6 0.6 2.1e-31 109.1 0.6 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|55378695|ref|YP_136545.1| - 2.7e-25 89.2 0.0 5.9e-25 88.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55378695|ref|YP_136545.1| - 6.3e-24 84.0 0.0 1.1e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|55378695|ref|YP_136545.1| - 2.9e-08 34.1 0.3 4.9e-08 33.3 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|55378695|ref|YP_136545.1| - 0.0016 18.2 0.0 0.0025 17.5 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Aldedh PF00171.22 gi|55378696|ref|YP_136546.1| - 6.6e-159 529.3 0.3 7.5e-159 529.1 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|55378696|ref|YP_136546.1| - 0.18 11.8 0.5 0.72 9.9 0.5 2.0 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Antibiotic_NAT PF02522.14 gi|55378697|ref|YP_136547.1| - 5.7e-77 258.5 0.0 6.6e-77 258.3 0.0 1.0 1 0 0 1 1 1 1 Aminoglycoside 3-N-acetyltransferase ADH_N PF08240.12 gi|55378698|ref|YP_136548.1| - 1.1e-26 92.8 1.3 1.3e-26 92.6 0.2 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|55378698|ref|YP_136548.1| - 5.6e-24 84.6 0.1 8.9e-24 83.9 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|55378698|ref|YP_136548.1| - 0.00016 22.7 0.0 0.0003 21.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|55378698|ref|YP_136548.1| - 0.00022 20.6 1.7 0.00042 19.7 1.5 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|55378698|ref|YP_136548.1| - 0.01 15.4 0.9 0.016 14.7 0.9 1.2 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|55378698|ref|YP_136548.1| - 0.042 13.2 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|55378698|ref|YP_136548.1| - 0.059 13.1 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMP-binding PF00501.28 gi|55378699|ref|YP_136549.1| - 9.1e-94 314.4 0.0 1.1e-93 314.2 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55378699|ref|YP_136549.1| - 8.7e-19 68.3 0.6 1.9e-18 67.2 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|55378699|ref|YP_136549.1| - 0.0016 18.7 0.1 0.0076 16.5 0.0 2.1 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain ECH_1 PF00378.20 gi|55378701|ref|YP_136551.1| - 2.7e-29 102.2 0.0 3e-29 102.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|55378701|ref|YP_136551.1| - 1.1e-15 58.0 0.1 1.4e-12 47.8 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase APH PF01636.23 gi|55378702|ref|YP_136552.1| - 3.7e-43 148.2 5.0 5.2e-43 147.7 5.0 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|55378702|ref|YP_136552.1| - 0.00025 20.5 0.0 0.00037 19.9 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.11 gi|55378702|ref|YP_136552.1| - 0.029 13.3 0.0 0.044 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) 3HCDH_N PF02737.18 gi|55378703|ref|YP_136553.1| - 1.4e-64 217.2 0.1 2.5e-64 216.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|55378703|ref|YP_136553.1| - 6.4e-54 182.9 0.0 9.8e-54 182.3 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|55378703|ref|YP_136553.1| - 4.6e-43 145.8 1.7 8e-22 77.7 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|55378703|ref|YP_136553.1| - 1.4e-30 107.0 0.0 1.1e-26 94.2 0.0 2.4 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|55378703|ref|YP_136553.1| - 0.0013 19.0 0.0 0.0038 17.4 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|55378703|ref|YP_136553.1| - 0.0021 18.1 0.1 0.0045 17.0 0.1 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|55378703|ref|YP_136553.1| - 0.019 14.3 1.0 0.019 14.3 1.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|55378703|ref|YP_136553.1| - 0.029 13.9 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|55378703|ref|YP_136553.1| - 0.04 14.5 1.0 0.15 12.7 1.0 2.0 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Acyl-CoA_dh_1 PF00441.24 gi|55378704|ref|YP_136554.1| - 3.7e-36 124.6 4.7 3.7e-36 124.6 4.7 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55378704|ref|YP_136554.1| - 2e-21 76.0 0.0 4.7e-21 74.8 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|55378704|ref|YP_136554.1| - 2.1e-15 57.2 7.1 2.1e-15 57.2 7.1 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|55378704|ref|YP_136554.1| - 9.3e-12 45.6 0.1 9.3e-12 45.6 0.1 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 gi|55378704|ref|YP_136554.1| - 0.024 14.3 0.0 0.082 12.6 0.0 1.9 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal DUF3660 PF12398.8 gi|55378704|ref|YP_136554.1| - 0.027 14.5 0.0 3.7 7.7 0.0 2.7 2 0 0 2 2 2 0 Receptor serine/threonine kinase AFG1_ATPase PF03969.16 gi|55378704|ref|YP_136554.1| - 0.05 12.5 0.0 0.075 11.9 0.0 1.1 1 0 0 1 1 1 0 AFG1-like ATPase adh_short_C2 PF13561.6 gi|55378705|ref|YP_136555.1| - 3.3e-62 210.1 2.9 3.9e-62 209.9 2.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55378705|ref|YP_136555.1| - 1.4e-59 200.9 0.3 1.7e-59 200.5 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|55378705|ref|YP_136555.1| - 1.8e-14 54.1 0.3 2.5e-14 53.6 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55378705|ref|YP_136555.1| - 1.6e-06 27.8 0.1 2.3e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|55378705|ref|YP_136555.1| - 0.0002 21.6 0.1 0.0031 17.8 0.1 2.3 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|55378705|ref|YP_136555.1| - 0.0012 18.8 1.0 0.0017 18.3 0.7 1.4 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|55378705|ref|YP_136555.1| - 0.0013 17.8 0.1 0.0025 16.9 0.1 1.5 1 1 1 2 2 2 1 RmlD substrate binding domain FTR PF01913.18 gi|55378705|ref|YP_136555.1| - 0.0064 16.4 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase F420_oxidored PF03807.17 gi|55378705|ref|YP_136555.1| - 0.011 16.3 0.1 0.02 15.4 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Polysacc_synt_2 PF02719.15 gi|55378705|ref|YP_136555.1| - 0.022 13.9 0.0 0.032 13.4 0.0 1.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein THF_DHG_CYH_C PF02882.19 gi|55378705|ref|YP_136555.1| - 0.023 14.0 0.0 0.06 12.7 0.0 1.6 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GDP_Man_Dehyd PF16363.5 gi|55378705|ref|YP_136555.1| - 0.062 12.7 0.4 0.081 12.3 0.0 1.4 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase DFP PF04127.15 gi|55378705|ref|YP_136555.1| - 0.09 12.6 0.3 0.19 11.6 0.3 1.6 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein MaoC_dehydratas PF01575.19 gi|55378706|ref|YP_136556.1| - 2.2e-26 91.8 0.6 2.7e-26 91.6 0.6 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|55378706|ref|YP_136556.1| - 4.7e-06 26.8 0.6 8.9e-06 25.9 0.6 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|55378706|ref|YP_136556.1| - 0.025 14.9 0.1 0.051 13.9 0.1 1.7 1 1 0 1 1 1 0 Thioesterase superfamily FabA PF07977.13 gi|55378706|ref|YP_136556.1| - 0.095 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain Acyl-CoA_dh_1 PF00441.24 gi|55378707|ref|YP_136557.1| - 2.7e-55 186.7 2.1 4.9e-55 185.9 2.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|55378707|ref|YP_136557.1| - 1.2e-28 100.0 0.3 3.6e-28 98.5 0.3 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|55378707|ref|YP_136557.1| - 1.2e-27 95.9 0.0 2.2e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|55378707|ref|YP_136557.1| - 1.4e-27 96.6 6.2 2.4e-27 95.9 6.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|55378707|ref|YP_136557.1| - 1.8e-06 27.9 2.3 5.3e-06 26.3 0.5 2.5 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|55378707|ref|YP_136557.1| - 0.01 15.0 0.7 0.034 13.2 0.1 1.9 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Peripla_BP_6 PF13458.6 gi|55378708|ref|YP_136558.1| - 2.6e-40 139.1 9.8 3.4e-40 138.8 9.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|55378708|ref|YP_136558.1| - 4.5e-25 88.5 0.5 7.1e-25 87.9 0.5 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|55378708|ref|YP_136558.1| - 1.4e-14 53.9 1.7 2.3e-13 49.9 1.7 2.1 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|55378708|ref|YP_136558.1| - 0.00042 20.0 4.2 0.0012 18.6 4.2 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UPF0020 PF01170.18 gi|55378708|ref|YP_136558.1| - 0.07 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 BPD_transp_2 PF02653.16 gi|55378709|ref|YP_136559.1| - 5.9e-32 110.9 46.6 6.9e-32 110.7 46.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component IRK PF01007.20 gi|55378709|ref|YP_136559.1| - 0.12 12.2 0.1 0.12 12.2 0.1 2.7 3 0 0 3 3 3 0 Inward rectifier potassium channel transmembrane domain BPD_transp_2 PF02653.16 gi|55378710|ref|YP_136560.1| - 3e-34 118.4 26.8 4.7e-34 117.8 26.8 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|55378711|ref|YP_136561.1| - 6.5e-13 49.4 0.0 9.4e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|55378711|ref|YP_136561.1| - 4.3e-07 29.7 0.2 8.6e-07 28.7 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter ABC_tran PF00005.27 gi|55378712|ref|YP_136562.1| - 2.1e-29 102.8 0.0 3.1e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378712|ref|YP_136562.1| - 2.5e-12 47.3 0.7 8e-06 25.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|55378712|ref|YP_136562.1| - 4.1e-07 29.6 0.1 9.7e-07 28.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|55378712|ref|YP_136562.1| - 4.8e-05 24.0 0.4 9.9e-05 22.9 0.2 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|55378712|ref|YP_136562.1| - 6e-05 22.6 0.2 0.0018 17.8 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55378712|ref|YP_136562.1| - 0.0022 18.3 0.1 0.011 16.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|55378712|ref|YP_136562.1| - 0.012 15.2 0.0 0.071 12.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|55378712|ref|YP_136562.1| - 0.022 15.2 0.1 0.04 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|55378712|ref|YP_136562.1| - 0.024 14.3 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|55378712|ref|YP_136562.1| - 0.032 13.9 0.3 0.083 12.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|55378712|ref|YP_136562.1| - 0.059 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Lum_binding PF00677.17 gi|55378712|ref|YP_136562.1| - 0.075 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Lumazine binding domain Zeta_toxin PF06414.12 gi|55378712|ref|YP_136562.1| - 0.077 12.3 0.1 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin ABC_ATPase PF09818.9 gi|55378712|ref|YP_136562.1| - 0.16 10.7 0.3 0.97 8.2 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|55378712|ref|YP_136562.1| - 0.26 11.2 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain HTH_10 PF04967.12 gi|55378715|ref|YP_136565.1| - 3.7e-17 61.9 0.2 6.3e-17 61.1 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55378715|ref|YP_136565.1| - 4.6e-13 49.3 0.7 6.1e-12 45.7 0.0 2.0 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|55378715|ref|YP_136565.1| - 1.8e-05 24.5 0.2 7.7e-05 22.5 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|55378715|ref|YP_136565.1| - 0.026 14.1 0.1 0.077 12.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55378715|ref|YP_136565.1| - 0.049 13.5 0.3 0.12 12.2 0.3 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|55378715|ref|YP_136565.1| - 0.083 12.4 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Virul_fac_BrkB PF03631.15 gi|55378716|ref|YP_136566.1| - 1.8e-37 129.3 30.6 2.1e-37 129.2 30.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Aldo_ket_red PF00248.21 gi|55378717|ref|YP_136567.1| - 1.2e-18 67.4 0.0 1.4e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Aminotran_5 PF00266.19 gi|55378718|ref|YP_136568.1| - 4.4e-35 121.3 0.0 5.1e-35 121.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|55378718|ref|YP_136568.1| - 3.4e-05 23.3 0.1 5.3e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|55378718|ref|YP_136568.1| - 0.00032 19.3 0.0 0.00047 18.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Usp PF00582.26 gi|55378719|ref|YP_136569.1| - 1.2e-33 116.6 8.5 3.8e-17 63.1 0.4 2.2 2 0 0 2 2 2 2 Universal stress protein family ADP_PFK_GK PF04587.15 gi|55378719|ref|YP_136569.1| - 0.049 12.2 0.1 1.6 7.2 0.0 2.1 2 0 0 2 2 2 0 ADP-specific Phosphofructokinase/Glucokinase conserved region RraB PF06877.11 gi|55378719|ref|YP_136569.1| - 0.12 13.1 0.2 13 6.6 0.0 2.3 2 0 0 2 2 2 0 Regulator of ribonuclease activity B DZR PF12773.7 gi|55378720|ref|YP_136570.1| - 7.8e-07 29.0 8.8 1.8e-06 27.9 8.8 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55378720|ref|YP_136570.1| - 1.8e-05 24.3 15.6 0.0028 17.3 5.4 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|55378720|ref|YP_136570.1| - 4.4e-05 24.1 9.4 0.00041 21.0 2.0 2.3 2 0 0 2 2 2 2 zinc-ribbon family RHH_1 PF01402.21 gi|55378720|ref|YP_136570.1| - 6.8e-05 22.7 5.0 0.0038 17.1 1.5 3.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-ribbon_3 PF13248.6 gi|55378720|ref|YP_136570.1| - 7.9e-05 21.9 13.8 0.0011 18.3 4.6 2.9 1 1 2 3 3 3 3 zinc-ribbon domain DUF1902 PF08972.11 gi|55378720|ref|YP_136570.1| - 0.0034 17.3 0.0 0.008 16.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1902) Nudix_N_2 PF14803.6 gi|55378720|ref|YP_136570.1| - 0.023 14.6 15.4 0.86 9.6 0.9 3.6 3 1 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|55378720|ref|YP_136570.1| - 0.043 13.8 4.6 0.097 12.7 4.6 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|55378720|ref|YP_136570.1| - 0.067 13.3 11.3 0.38 10.9 2.8 3.5 2 1 1 3 3 3 0 Zinc ribbon domain Band_3_cyto PF07565.13 gi|55378720|ref|YP_136570.1| - 0.098 12.4 0.9 0.14 11.9 0.9 1.2 1 0 0 1 1 1 0 Band 3 cytoplasmic domain zf_UBZ PF18439.1 gi|55378720|ref|YP_136570.1| - 0.13 11.9 3.1 36 4.1 0.2 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger VapB_antitoxin PF09957.9 gi|55378720|ref|YP_136570.1| - 0.16 11.9 2.5 0.2 11.6 0.6 2.2 2 1 0 2 2 1 0 Bacterial antitoxin of type II TA system, VapB DUF1610 PF07754.11 gi|55378720|ref|YP_136570.1| - 0.16 12.0 0.6 0.16 12.0 0.6 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.12 gi|55378720|ref|YP_136570.1| - 0.22 11.5 8.9 0.19 11.8 5.2 2.2 1 1 1 2 2 2 0 zinc-ribbons zf-NADH-PPase PF09297.11 gi|55378720|ref|YP_136570.1| - 0.26 11.0 13.3 1 9.1 0.1 3.8 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|55378720|ref|YP_136570.1| - 0.27 11.1 5.8 0.26 11.2 1.0 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.13 gi|55378720|ref|YP_136570.1| - 0.29 8.9 4.0 0.37 8.6 4.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Cys_rich_KTR PF14205.6 gi|55378720|ref|YP_136570.1| - 0.51 10.2 3.5 5.2 6.9 3.6 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR Prok-RING_1 PF14446.6 gi|55378720|ref|YP_136570.1| - 0.52 10.3 9.1 0.79 9.7 5.2 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Metallothio_PEC PF02068.16 gi|55378720|ref|YP_136570.1| - 1 9.8 12.3 1.5 9.3 11.9 1.6 1 1 0 1 1 1 0 Plant PEC family metallothionein HypA PF01155.19 gi|55378720|ref|YP_136570.1| - 1.9 8.5 9.6 1.1 9.3 2.7 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|55378720|ref|YP_136570.1| - 2.9 7.9 8.3 1.2 9.1 4.9 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) NOB1_Zn_bind PF08772.11 gi|55378720|ref|YP_136570.1| - 4.8 7.4 13.0 5.6 7.2 5.5 2.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_7 PF02591.15 gi|55378720|ref|YP_136570.1| - 8.2 6.7 9.1 8.1 6.7 0.3 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain RHH_1 PF01402.21 gi|55378721|ref|YP_136571.1| - 1.4e-08 34.4 0.2 2e-08 33.8 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|55378721|ref|YP_136571.1| - 1.7e-05 25.0 0.0 1.8e-05 24.9 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|55378721|ref|YP_136571.1| - 0.02 14.8 0.2 0.026 14.4 0.2 1.3 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PSK_trans_fac PF07704.11 gi|55378721|ref|YP_136571.1| - 0.022 15.5 0.8 0.027 15.2 0.8 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor Tubulin PF00091.25 gi|55378722|ref|YP_136572.1| - 1.6e-37 129.6 3.4 4.5e-37 128.2 3.4 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|55378722|ref|YP_136572.1| - 3.7e-36 123.3 4.9 3.8e-36 123.3 0.8 2.9 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|55378722|ref|YP_136572.1| - 0.059 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 ThiF family ATP_bind_3 PF01171.20 gi|55378723|ref|YP_136573.1| - 2e-14 53.7 0.0 2.9e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|55378723|ref|YP_136573.1| - 0.00013 20.9 0.0 0.00017 20.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|55378723|ref|YP_136573.1| - 0.0006 19.3 1.2 0.0006 19.3 1.2 3.3 5 0 0 5 5 5 1 Zinc-ribbon NAD_synthase PF02540.17 gi|55378723|ref|YP_136573.1| - 0.00099 18.3 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 NAD synthase Lar_restr_allev PF14354.6 gi|55378723|ref|YP_136573.1| - 0.001 19.4 2.6 0.4 11.1 0.1 3.4 3 0 0 3 3 3 1 Restriction alleviation protein Lar PAPS_reduct PF01507.19 gi|55378723|ref|YP_136573.1| - 0.0011 19.1 0.0 0.0023 18.0 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|55378723|ref|YP_136573.1| - 0.038 13.5 0.4 0.42 10.1 0.0 2.6 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC QueH PF02677.14 gi|55378723|ref|YP_136573.1| - 0.05 13.7 0.0 0.074 13.1 0.0 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH DUF3181 PF11378.8 gi|55378723|ref|YP_136573.1| - 0.14 12.4 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3181) zf-ribbon_3 PF13248.6 gi|55378723|ref|YP_136573.1| - 0.48 9.9 14.1 3.8 7.0 0.2 3.7 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|55378723|ref|YP_136573.1| - 2.1 8.4 8.9 1.4 9.0 0.8 3.2 3 0 0 3 3 3 0 Double zinc ribbon Abhydrolase_6 PF12697.7 gi|55378724|ref|YP_136574.1| - 1.2e-06 29.3 7.3 1.6e-06 28.9 7.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|55378724|ref|YP_136574.1| - 0.024 14.5 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase Abhydrolase_5 PF12695.7 gi|55378724|ref|YP_136574.1| - 0.25 11.1 0.0 0.38 10.5 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family DUF2332 PF10094.9 gi|55378725|ref|YP_136575.1| - 1.1e-117 393.3 4.8 1.2e-117 393.2 4.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) Reo_sigmaC_M PF17750.1 gi|55378727|ref|YP_136577.1| - 0.07 13.0 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Reovirus sigma C capsid protein triple beta spiral CopD PF05425.13 gi|55378728|ref|YP_136578.1| - 5.5e-11 42.8 2.9 5.5e-11 42.8 2.9 1.9 1 1 1 2 2 2 1 Copper resistance protein D DUF2214 PF09980.9 gi|55378728|ref|YP_136578.1| - 4.2e-05 23.4 3.2 9.1e-05 22.3 3.2 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2214) Methyltransf_11 PF08241.12 gi|55378730|ref|YP_136580.1| - 3e-18 66.3 0.3 1.1e-17 64.4 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378730|ref|YP_136580.1| - 9.5e-16 58.3 2.6 3.4e-15 56.5 0.4 2.8 2 2 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378730|ref|YP_136580.1| - 4.8e-13 49.2 0.7 4e-12 46.2 0.7 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55378730|ref|YP_136580.1| - 6.2e-11 42.4 0.0 1.3e-10 41.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55378730|ref|YP_136580.1| - 4.1e-09 37.1 0.5 2.1e-08 34.8 0.3 2.3 2 1 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|55378730|ref|YP_136580.1| - 7e-09 35.5 0.1 1.4e-08 34.6 0.1 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|55378730|ref|YP_136580.1| - 5.7e-08 32.4 0.1 2.5e-07 30.3 0.1 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|55378730|ref|YP_136580.1| - 5.8e-05 23.1 0.0 0.00018 21.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|55378730|ref|YP_136580.1| - 0.00045 20.1 0.2 0.00061 19.7 0.2 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 gi|55378730|ref|YP_136580.1| - 0.00076 19.3 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|55378730|ref|YP_136580.1| - 0.0012 18.2 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|55378730|ref|YP_136580.1| - 0.0045 17.1 0.2 0.0086 16.2 0.2 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.14 gi|55378730|ref|YP_136580.1| - 0.0054 16.3 0.1 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|55378730|ref|YP_136580.1| - 0.023 13.8 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase AP_endonuc_2 PF01261.24 gi|55378731|ref|YP_136581.1| - 3.1e-31 108.5 1.5 6.1e-31 107.5 1.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel YtpI PF14007.6 gi|55378732|ref|YP_136582.1| - 0.1 12.7 4.2 0.14 12.3 4.2 1.2 1 0 0 1 1 1 0 YtpI-like protein HTH_10 PF04967.12 gi|55378733|ref|YP_136583.1| - 1.3e-12 47.4 0.0 2.1e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|55378733|ref|YP_136583.1| - 0.0038 17.1 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 MarR family peroxidase PF00141.23 gi|55378734|ref|YP_136584.1| - 7.1e-90 300.7 0.0 4.6e-51 173.7 0.0 2.3 2 0 0 2 2 2 2 Peroxidase STI1 PF17830.1 gi|55378734|ref|YP_136584.1| - 0.16 11.9 0.2 0.45 10.5 0.0 1.8 2 0 0 2 2 2 0 STI1 domain BPL_LplA_LipB PF03099.19 gi|55378735|ref|YP_136585.1| - 5e-05 23.2 0.0 8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Cupin_2 PF07883.11 gi|55378736|ref|YP_136586.1| - 8.7e-11 41.4 0.9 1.8e-10 40.4 0.9 1.5 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|55378736|ref|YP_136586.1| - 0.00048 20.0 0.5 0.00091 19.1 0.5 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain TF_Zn_Ribbon PF08271.12 gi|55378736|ref|YP_136586.1| - 0.0011 18.4 1.8 0.0026 17.2 1.8 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cupin_3 PF05899.12 gi|55378736|ref|YP_136586.1| - 0.012 15.3 0.5 0.04 13.6 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF861) Nudix_N_2 PF14803.6 gi|55378736|ref|YP_136586.1| - 0.02 14.8 1.5 0.04 13.8 1.5 1.5 1 0 0 1 1 1 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|55378736|ref|YP_136586.1| - 0.04 13.9 1.1 0.13 12.2 1.1 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|55378736|ref|YP_136586.1| - 0.047 13.7 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|55378736|ref|YP_136586.1| - 0.071 13.1 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55378736|ref|YP_136586.1| - 0.97 9.6 4.0 18 5.5 0.6 2.0 1 1 0 2 2 2 0 Zinc ribbon domain HTH_10 PF04967.12 gi|55378737|ref|YP_136587.1| - 6.7e-14 51.4 0.0 1e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Complex1_49kDa PF00346.19 gi|55378738|ref|YP_136588.1| - 1.1e-83 280.5 0.0 2.2e-82 276.2 0.0 2.0 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|55378738|ref|YP_136588.1| - 9.3e-35 119.9 0.1 1.8e-34 119.0 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PMSR PF01625.21 gi|55378739|ref|YP_136589.1| - 8.5e-64 214.4 3.8 9.9e-64 214.1 3.8 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4191 PF13829.6 gi|55378741|ref|YP_136591.1| - 0.39 10.0 2.2 0.44 9.9 2.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4781 PF16013.5 gi|55378741|ref|YP_136591.1| - 1.1 8.0 3.9 1.2 7.8 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) AAA PF00004.29 gi|55378742|ref|YP_136592.1| - 2.2e-56 189.9 0.0 6.9e-46 156.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55378742|ref|YP_136592.1| - 7.8e-15 54.4 4.0 3.3e-12 46.0 0.2 2.8 2 0 0 2 2 2 2 AAA+ lid domain AAA_5 PF07728.14 gi|55378742|ref|YP_136592.1| - 1.4e-10 41.3 0.3 8.4e-05 22.6 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) CDC48_2 PF02933.17 gi|55378742|ref|YP_136592.1| - 2.8e-10 39.8 0.3 1.2e-09 37.8 0.3 2.2 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|55378742|ref|YP_136592.1| - 1.7e-08 35.1 7.4 0.00026 21.4 0.1 3.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|55378742|ref|YP_136592.1| - 2.6e-08 34.2 0.0 0.00014 22.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|55378742|ref|YP_136592.1| - 7.4e-08 32.5 1.2 0.16 11.9 0.0 4.1 4 0 0 4 4 4 2 NACHT domain AAA_22 PF13401.6 gi|55378742|ref|YP_136592.1| - 1.6e-07 31.7 0.5 0.0031 17.8 0.0 3.7 2 2 0 2 2 2 2 AAA domain RuvB_N PF05496.12 gi|55378742|ref|YP_136592.1| - 8.2e-07 28.9 0.0 0.00052 19.8 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|55378742|ref|YP_136592.1| - 8.8e-07 29.2 0.2 0.0026 17.9 0.1 3.1 2 1 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|55378742|ref|YP_136592.1| - 8.8e-07 29.3 0.0 0.022 15.0 0.0 3.3 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|55378742|ref|YP_136592.1| - 4e-06 26.7 0.0 0.037 13.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|55378742|ref|YP_136592.1| - 5.6e-06 26.9 0.0 0.029 14.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|55378742|ref|YP_136592.1| - 2.2e-05 24.1 0.0 0.33 10.5 0.0 2.7 3 0 0 3 3 3 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|55378742|ref|YP_136592.1| - 2.7e-05 23.8 7.4 0.3 10.6 0.1 4.0 2 2 1 4 4 4 2 AAA domain AAA_14 PF13173.6 gi|55378742|ref|YP_136592.1| - 3.8e-05 23.7 0.0 0.016 15.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|55378742|ref|YP_136592.1| - 3.8e-05 23.7 0.0 0.078 13.0 0.0 2.3 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|55378742|ref|YP_136592.1| - 5e-05 23.1 0.0 0.05 13.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|55378742|ref|YP_136592.1| - 0.00017 21.4 0.0 0.029 14.1 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|55378742|ref|YP_136592.1| - 0.00021 20.7 0.2 0.0091 15.4 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Molydop_binding PF01568.21 gi|55378742|ref|YP_136592.1| - 0.00024 21.1 0.1 0.0016 18.4 0.1 2.4 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain DUF815 PF05673.13 gi|55378742|ref|YP_136592.1| - 0.00046 19.4 0.0 0.19 10.9 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|55378742|ref|YP_136592.1| - 0.00048 20.0 0.0 0.067 13.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial dnaA protein ABC_tran PF00005.27 gi|55378742|ref|YP_136592.1| - 0.00048 20.7 0.0 0.69 10.4 0.0 2.5 2 0 0 2 2 2 1 ABC transporter RNA_helicase PF00910.22 gi|55378742|ref|YP_136592.1| - 0.00068 20.0 0.0 0.23 11.8 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_30 PF13604.6 gi|55378742|ref|YP_136592.1| - 0.00079 19.2 1.5 0.27 10.9 0.0 3.1 3 1 0 3 3 2 1 AAA domain AAA_3 PF07726.11 gi|55378742|ref|YP_136592.1| - 0.002 18.0 0.0 0.29 11.0 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|55378742|ref|YP_136592.1| - 0.002 17.4 0.0 0.96 8.7 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin MCM PF00493.23 gi|55378742|ref|YP_136592.1| - 0.0021 17.2 0.0 0.12 11.5 0.1 2.5 2 1 0 2 2 2 1 MCM P-loop domain AAA_19 PF13245.6 gi|55378742|ref|YP_136592.1| - 0.003 17.9 0.0 2.4 8.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|55378742|ref|YP_136592.1| - 0.0052 16.5 0.0 4.4 7.1 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain TIP49 PF06068.13 gi|55378742|ref|YP_136592.1| - 0.01 15.1 0.0 0.055 12.7 0.0 2.0 2 0 0 2 2 2 0 TIP49 P-loop domain NB-ARC PF00931.22 gi|55378742|ref|YP_136592.1| - 0.013 14.6 0.0 1.9 7.6 0.0 2.7 3 0 0 3 3 3 0 NB-ARC domain Roc PF08477.13 gi|55378742|ref|YP_136592.1| - 0.034 14.4 0.0 3.3 8.0 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|55378742|ref|YP_136592.1| - 0.045 13.7 0.0 8 6.3 0.0 2.5 2 0 0 2 2 2 0 NTPase TniB PF05621.11 gi|55378742|ref|YP_136592.1| - 0.047 13.1 0.0 5.1 6.5 0.0 2.5 2 1 0 2 2 2 0 Bacterial TniB protein AAA_17 PF13207.6 gi|55378742|ref|YP_136592.1| - 0.047 14.1 0.0 14 6.2 0.0 2.7 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|55378742|ref|YP_136592.1| - 0.073 13.2 0.0 0.44 10.7 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|55378742|ref|YP_136592.1| - 0.077 12.9 0.0 3.2 7.6 0.0 2.4 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|55378742|ref|YP_136592.1| - 0.095 12.4 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.16 gi|55378742|ref|YP_136592.1| - 0.1 11.4 0.4 7.9 5.2 0.2 2.8 2 1 0 2 2 2 0 AFG1-like ATPase Parvo_NS1 PF01057.17 gi|55378742|ref|YP_136592.1| - 0.1 11.6 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 cobW PF02492.19 gi|55378742|ref|YP_136592.1| - 0.18 11.4 0.2 19 4.8 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain BRI3BP PF14965.6 gi|55378743|ref|YP_136593.1| - 0.033 13.7 0.9 0.036 13.6 0.9 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Bac_rhodopsin PF01036.18 gi|55378744|ref|YP_136594.1| - 2.7e-67 226.6 20.1 3.1e-67 226.4 20.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Phage_holin_5_2 PF16079.5 gi|55378744|ref|YP_136594.1| - 0.98 9.8 5.3 0.33 11.3 0.2 2.5 2 1 1 3 3 3 0 Phage holin family Hol44, in holin superfamily V IncE PF17627.2 gi|55378744|ref|YP_136594.1| - 1.1 9.3 0.1 1.1 9.3 0.1 2.6 2 2 1 3 3 3 0 Inclusion membrane protein E Mut7-C PF01927.16 gi|55378745|ref|YP_136595.1| - 0.0043 17.2 2.0 0.11 12.7 2.0 2.0 1 1 0 1 1 1 1 Mut7-C RNAse domain Zn-ribbon_8 PF09723.10 gi|55378745|ref|YP_136595.1| - 0.0068 16.5 1.6 2.4 8.3 0.0 2.5 2 0 0 2 2 2 2 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|55378745|ref|YP_136595.1| - 0.0071 15.8 1.5 0.16 11.5 1.6 2.4 1 1 1 2 2 2 2 TFIIB zinc-binding C1_1 PF00130.22 gi|55378745|ref|YP_136595.1| - 0.014 15.2 0.3 0.02 14.8 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Fib_alpha PF08702.10 gi|55378745|ref|YP_136595.1| - 0.023 14.9 0.7 0.028 14.6 0.7 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family SlyX PF04102.12 gi|55378745|ref|YP_136595.1| - 0.029 15.0 0.5 0.029 15.0 0.5 1.6 2 0 0 2 2 2 0 SlyX ADK_lid PF05191.14 gi|55378745|ref|YP_136595.1| - 0.03 14.3 2.4 1.3 9.1 0.2 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid IBR PF01485.21 gi|55378745|ref|YP_136595.1| - 0.056 13.7 0.0 0.088 13.0 0.0 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DUF35_N PF12172.8 gi|55378745|ref|YP_136595.1| - 0.088 12.7 4.2 0.45 10.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0242 PF06785.11 gi|55378745|ref|YP_136595.1| - 0.12 12.4 5.2 0.17 11.9 5.2 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CHDCT2 PF08074.11 gi|55378745|ref|YP_136595.1| - 0.35 11.0 2.1 0.42 10.8 2.1 1.1 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain Rubredoxin_2 PF18073.1 gi|55378745|ref|YP_136595.1| - 0.69 9.7 3.7 3.7 7.4 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|55378745|ref|YP_136595.1| - 1.1 9.2 5.1 0.45 10.5 0.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|55378745|ref|YP_136595.1| - 2 9.0 5.8 2 9.1 0.4 2.5 3 0 0 3 3 2 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.6 gi|55378745|ref|YP_136595.1| - 5.5 6.8 6.3 48 3.8 6.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain 4HBT_2 PF13279.6 gi|55378746|ref|YP_136596.1| - 1e-19 71.2 0.0 1.2e-19 71.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|55378746|ref|YP_136596.1| - 1.8e-16 60.2 0.1 4.5e-16 59.0 0.1 1.7 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|55378746|ref|YP_136596.1| - 5.8e-11 42.2 0.3 2.5e-06 27.0 0.2 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase Lipase3_N PF03893.16 gi|55378746|ref|YP_136596.1| - 0.046 13.7 0.1 0.075 13.1 0.1 1.3 1 0 0 1 1 1 0 Lipase 3 N-terminal region AI-2E_transport PF01594.16 gi|55378747|ref|YP_136597.1| - 4.8e-20 72.0 38.2 2.1e-19 69.8 38.2 2.0 1 1 0 1 1 1 1 AI-2E family transporter Mannosyl_trans4 PF15971.5 gi|55378748|ref|YP_136598.1| - 3.4e-75 251.4 10.0 3.4e-75 251.4 10.0 1.9 2 0 0 2 2 2 1 DolP-mannose mannosyltransferase Imp-YgjV PF10688.9 gi|55378748|ref|YP_136598.1| - 1.8 8.4 10.5 0.51 10.1 1.4 2.5 2 0 0 2 2 2 0 Bacterial inner membrane protein RIO1 PF01163.22 gi|55378749|ref|YP_136599.1| - 9.1e-50 168.9 1.0 1.3e-49 168.4 1.0 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|55378749|ref|YP_136599.1| - 1.8e-29 101.7 0.1 3.8e-29 100.7 0.1 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|55378749|ref|YP_136599.1| - 5e-05 23.3 0.2 0.023 14.6 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|55378749|ref|YP_136599.1| - 0.0067 15.8 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain DUF5642 PF18702.1 gi|55378749|ref|YP_136599.1| - 0.099 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5642) Fe_dep_repress PF01325.19 gi|55378750|ref|YP_136600.1| - 2e-14 53.5 0.0 3.3e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|55378750|ref|YP_136600.1| - 3.2e-07 30.1 0.0 7e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55378750|ref|YP_136600.1| - 0.00039 20.3 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|55378750|ref|YP_136600.1| - 0.0006 19.3 0.0 0.00099 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|55378750|ref|YP_136600.1| - 0.00065 19.6 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repr_C PF02742.15 gi|55378750|ref|YP_136600.1| - 0.014 15.4 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, metal binding and dimerisation domain Rrf2 PF02082.20 gi|55378750|ref|YP_136600.1| - 0.016 15.5 0.0 0.029 14.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|55378750|ref|YP_136600.1| - 0.017 14.9 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|55378750|ref|YP_136600.1| - 0.018 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain NifU PF01106.17 gi|55378751|ref|YP_136601.1| - 1.5e-13 50.7 0.1 2.1e-13 50.2 0.1 1.2 1 0 0 1 1 1 1 NifU-like domain SBP_bac_5 PF00496.22 gi|55378752|ref|YP_136602.1| - 3.9e-47 161.0 3.9 5.3e-47 160.6 3.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|55378752|ref|YP_136602.1| - 0.024 14.5 3.7 0.042 13.7 3.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|55378753|ref|YP_136603.1| - 3e-39 134.7 12.7 3e-39 134.7 12.7 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55378754|ref|YP_136604.1| - 6.3e-31 107.6 7.1 6.3e-31 107.6 7.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|55378754|ref|YP_136604.1| - 4.1e-09 36.3 0.1 4.1e-09 36.3 0.1 3.2 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|55378755|ref|YP_136605.1| - 2.8e-27 95.9 0.0 3.9e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|55378755|ref|YP_136605.1| - 5.1e-19 68.5 0.1 8.8e-19 67.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|55378755|ref|YP_136605.1| - 7.5e-05 22.7 0.1 0.00014 21.8 0.0 1.5 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|55378755|ref|YP_136605.1| - 0.025 14.8 0.3 0.41 10.9 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55378755|ref|YP_136605.1| - 0.068 13.5 0.1 0.12 12.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|55378756|ref|YP_136606.1| - 1.4e-34 119.5 0.0 2.5e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|55378756|ref|YP_136606.1| - 7.5e-16 58.4 0.0 1.5e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|55378756|ref|YP_136606.1| - 3.1e-06 27.7 1.3 4.8e-06 27.1 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|55378756|ref|YP_136606.1| - 3.2e-05 23.5 0.0 5.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55378756|ref|YP_136606.1| - 5e-05 23.6 0.2 0.00065 20.0 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|55378756|ref|YP_136606.1| - 0.00019 21.3 0.1 0.34 10.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|55378756|ref|YP_136606.1| - 0.0045 17.4 0.0 0.037 14.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|55378756|ref|YP_136606.1| - 0.007 16.3 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|55378756|ref|YP_136606.1| - 0.0098 15.9 0.1 0.034 14.1 0.1 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|55378756|ref|YP_136606.1| - 0.012 15.3 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.14 gi|55378756|ref|YP_136606.1| - 0.026 14.4 0.1 0.047 13.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|55378756|ref|YP_136606.1| - 0.037 13.9 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase PRK PF00485.18 gi|55378756|ref|YP_136606.1| - 0.042 13.6 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.22 gi|55378756|ref|YP_136606.1| - 0.049 12.8 0.0 0.085 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|55378756|ref|YP_136606.1| - 0.067 13.6 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|55378756|ref|YP_136606.1| - 0.089 12.5 0.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.6 gi|55378756|ref|YP_136606.1| - 0.098 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|55378756|ref|YP_136606.1| - 0.11 12.3 0.1 0.27 11.0 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TniB PF05621.11 gi|55378756|ref|YP_136606.1| - 0.12 11.8 0.0 17 4.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_33 PF13671.6 gi|55378756|ref|YP_136606.1| - 0.14 12.3 0.4 0.48 10.6 0.2 2.0 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|55378756|ref|YP_136606.1| - 0.17 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|55378756|ref|YP_136606.1| - 0.17 12.3 0.0 0.38 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain PAS_4 PF08448.10 gi|55378757|ref|YP_136607.1| - 2.9e-37 127.3 3.3 2.3e-13 50.3 0.1 3.7 3 0 0 3 3 3 3 PAS fold PAS PF00989.25 gi|55378757|ref|YP_136607.1| - 4e-35 120.2 0.6 2e-11 43.9 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|55378757|ref|YP_136607.1| - 7.2e-28 96.7 0.0 2.7e-18 66.0 0.0 4.6 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|55378757|ref|YP_136607.1| - 3.8e-27 94.6 0.1 1.1e-08 35.3 0.0 4.0 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.24 gi|55378757|ref|YP_136607.1| - 1.8e-23 82.8 0.0 7.6e-23 80.8 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|55378757|ref|YP_136607.1| - 5.1e-14 52.7 0.0 2.6e-12 47.3 0.0 2.9 2 1 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|55378757|ref|YP_136607.1| - 2e-13 50.0 0.5 1.2e-05 25.2 0.0 3.9 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|55378757|ref|YP_136607.1| - 2.5e-10 40.2 0.6 2.5e-10 40.2 0.6 3.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.7 gi|55378757|ref|YP_136607.1| - 3.1e-08 33.8 2.4 0.00098 19.3 0.0 4.6 5 1 0 5 5 5 1 PAS fold Methyltransf_24 PF13578.6 gi|55378757|ref|YP_136607.1| - 0.0055 17.7 0.5 0.057 14.4 0.0 3.0 3 0 0 3 3 2 1 Methyltransferase domain PAS_10 PF13596.6 gi|55378757|ref|YP_136607.1| - 0.0081 16.7 0.0 1.5 9.4 0.0 3.6 3 1 0 3 3 3 1 PAS domain OKR_DC_1_N PF03709.15 gi|55378757|ref|YP_136607.1| - 0.026 14.8 0.1 0.36 11.1 0.0 2.5 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_5 PF14501.6 gi|55378757|ref|YP_136607.1| - 0.049 13.5 0.0 19 5.2 0.0 3.0 2 1 0 2 2 2 0 GHKL domain HATPase_c_2 PF13581.6 gi|55378757|ref|YP_136607.1| - 0.074 13.0 0.2 0.28 11.2 0.2 2.0 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_12 PF18095.1 gi|55378757|ref|YP_136607.1| - 0.097 12.3 0.0 2.6 7.7 0.0 2.3 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain Psb28 PF03912.14 gi|55378757|ref|YP_136607.1| - 0.22 11.8 0.8 5.2 7.4 0.1 2.9 2 1 1 3 3 3 0 Psb28 protein ABC_transp_aux PF09822.9 gi|55378759|ref|YP_136609.1| - 4.6e-06 26.3 0.0 8.7e-06 25.4 0.0 1.5 1 1 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|55378759|ref|YP_136609.1| - 0.00047 20.5 0.4 0.0019 18.6 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ThuA PF06283.11 gi|55378759|ref|YP_136609.1| - 0.028 14.6 0.1 0.033 14.4 0.1 1.3 1 0 0 1 1 1 0 Trehalose utilisation Peptidase_S49 PF01343.18 gi|55378760|ref|YP_136610.1| - 8.5e-20 71.3 2.0 2.3e-18 66.6 2.0 2.3 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.23 gi|55378760|ref|YP_136610.1| - 0.00054 19.9 0.1 0.0024 17.8 0.0 1.9 2 0 0 2 2 2 1 Clp protease OKR_DC_1_N PF03709.15 gi|55378760|ref|YP_136610.1| - 0.0014 18.8 0.0 0.0079 16.5 0.0 2.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain SDH_sah PF01972.16 gi|55378760|ref|YP_136610.1| - 0.083 11.9 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase ECH_1 PF00378.20 gi|55378760|ref|YP_136610.1| - 0.11 11.8 0.4 0.71 9.1 0.4 2.1 1 1 0 1 1 1 0 Enoyl-CoA hydratase/isomerase Aldo_ket_red PF00248.21 gi|55378761|ref|YP_136611.1| - 1.2e-21 77.2 0.0 1.6e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_11 PF08241.12 gi|55378762|ref|YP_136612.1| - 3.3e-12 46.9 0.1 5.9e-12 46.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378762|ref|YP_136612.1| - 2.8e-11 44.0 0.1 5e-11 43.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55378762|ref|YP_136612.1| - 2.2e-05 25.1 0.0 3.5e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|55378762|ref|YP_136612.1| - 0.0014 19.6 0.4 0.004 18.2 0.2 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_PK PF05891.12 gi|55378762|ref|YP_136612.1| - 0.0056 16.2 0.0 0.008 15.7 0.0 1.2 1 0 0 1 1 1 1 AdoMet dependent proline di-methyltransferase Methyltransf_31 PF13847.6 gi|55378762|ref|YP_136612.1| - 0.014 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55378762|ref|YP_136612.1| - 0.026 14.3 0.0 0.068 13.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|55378762|ref|YP_136612.1| - 0.048 12.7 0.0 0.067 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DUF2321 PF10083.9 gi|55378762|ref|YP_136612.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) Cupin_2 PF07883.11 gi|55378763|ref|YP_136613.1| - 6.4e-08 32.2 5.8 8.6e-08 31.8 2.8 2.0 1 1 1 2 2 2 1 Cupin domain AraC_binding_2 PF14525.6 gi|55378763|ref|YP_136613.1| - 0.04 13.6 0.2 0.044 13.5 0.2 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_1 PF00190.22 gi|55378763|ref|YP_136613.1| - 0.047 13.3 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 Cupin PCO_ADO PF07847.12 gi|55378763|ref|YP_136613.1| - 0.05 13.1 0.0 0.053 13.0 0.0 1.1 1 0 0 1 1 1 0 PCO_ADO AraC_binding PF02311.19 gi|55378763|ref|YP_136613.1| - 0.059 13.3 0.1 0.073 13.0 0.1 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|55378763|ref|YP_136613.1| - 0.067 12.9 0.1 0.27 10.9 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF861) TFIIB PF00382.19 gi|55378764|ref|YP_136614.1| - 6.6e-27 93.4 0.2 2.5e-13 49.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55378764|ref|YP_136614.1| - 3.7e-17 61.5 2.5 7.7e-17 60.5 2.5 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|55378764|ref|YP_136614.1| - 0.00016 21.8 0.0 0.0073 16.4 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|55378764|ref|YP_136614.1| - 0.00034 20.5 0.9 0.00067 19.5 0.9 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Sigma70_r4 PF04545.16 gi|55378764|ref|YP_136614.1| - 0.041 13.4 4.4 0.071 12.6 0.2 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Auto_anti-p27 PF06677.12 gi|55378764|ref|YP_136614.1| - 0.066 13.4 1.1 0.14 12.3 1.1 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|55378764|ref|YP_136614.1| - 0.083 12.9 0.4 0.14 12.2 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon HTH_Tnp_ISL3 PF13542.6 gi|55378764|ref|YP_136614.1| - 0.096 12.1 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF1610 PF07754.11 gi|55378764|ref|YP_136614.1| - 0.26 11.3 1.8 0.59 10.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RRN7 PF11781.8 gi|55378764|ref|YP_136614.1| - 0.29 10.8 1.8 0.51 10.1 1.8 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|55378764|ref|YP_136614.1| - 0.6 10.1 2.4 2.4 8.1 2.4 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|55378764|ref|YP_136614.1| - 0.96 9.0 3.9 8 6.0 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|55378764|ref|YP_136614.1| - 7.7 6.9 6.9 45 4.4 6.9 2.2 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase HTH_10 PF04967.12 gi|55378765|ref|YP_136615.1| - 5.4e-14 51.7 0.0 8.4e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|55378765|ref|YP_136615.1| - 2.7e-05 23.7 0.1 0.00052 19.6 0.1 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|55378765|ref|YP_136615.1| - 9.5e-05 22.1 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|55378765|ref|YP_136615.1| - 0.001 18.9 0.1 0.0024 17.7 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|55378765|ref|YP_136615.1| - 0.0028 17.2 0.0 0.0048 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_8 PF02954.19 gi|55378765|ref|YP_136615.1| - 0.0038 17.0 0.1 0.0081 15.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.6 gi|55378765|ref|YP_136615.1| - 0.0058 16.4 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|55378765|ref|YP_136615.1| - 0.0087 16.0 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_WhiA PF02650.14 gi|55378765|ref|YP_136615.1| - 0.011 16.0 0.0 0.045 14.1 0.0 2.0 2 0 0 2 2 2 0 WhiA C-terminal HTH domain HTH_20 PF12840.7 gi|55378765|ref|YP_136615.1| - 0.012 15.6 0.2 0.068 13.2 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|55378765|ref|YP_136615.1| - 0.018 14.5 0.1 0.053 13.1 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|55378765|ref|YP_136615.1| - 0.043 13.9 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_1_2 PF13022.6 gi|55378765|ref|YP_136615.1| - 0.047 13.8 0.0 0.083 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_psq PF05225.16 gi|55378765|ref|YP_136615.1| - 0.064 13.0 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Sigma70_ECF PF07638.11 gi|55378765|ref|YP_136615.1| - 0.086 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor Peptidase_A2E PF12382.8 gi|55378766|ref|YP_136616.1| - 0.11 12.5 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon peptidase DUF677 PF05055.12 gi|55378766|ref|YP_136616.1| - 0.2 10.5 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) CBM_2 PF00553.19 gi|55378767|ref|YP_136617.1| - 0.038 14.3 1.2 1.7 9.0 0.3 2.3 2 0 0 2 2 2 0 Cellulose binding domain 2-Hacid_dh_C PF02826.19 gi|55378768|ref|YP_136618.1| - 5.4e-57 192.0 0.0 7.5e-57 191.5 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|55378768|ref|YP_136618.1| - 8.8e-32 109.6 1.0 1e-31 109.4 1.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|55378768|ref|YP_136618.1| - 0.23 11.9 1.7 0.81 10.1 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ThiS PF02597.20 gi|55378769|ref|YP_136619.1| - 1.3e-16 60.9 0.0 1.5e-16 60.8 0.0 1.0 1 0 0 1 1 1 1 ThiS family TrkA_C PF02080.21 gi|55378769|ref|YP_136619.1| - 0.014 15.2 0.1 2 8.3 0.1 2.1 2 0 0 2 2 2 0 TrkA-C domain ThiS PF02597.20 gi|55378770|ref|YP_136620.1| - 1.2e-05 25.8 0.0 0.00012 22.6 0.0 2.1 1 1 0 1 1 1 1 ThiS family DUF1889 PF08986.10 gi|55378770|ref|YP_136620.1| - 0.13 12.6 0.0 5.8 7.3 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1889) AFOR_C PF01314.18 gi|55378775|ref|YP_136625.1| - 2e-117 392.4 4.8 2.5e-117 392.2 4.8 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|55378775|ref|YP_136625.1| - 4.1e-71 239.0 0.1 6.1e-71 238.4 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ribosomal_L15e PF00827.17 gi|55378776|ref|YP_136626.1| - 1.2e-78 263.3 7.8 1.3e-78 263.1 7.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 BCD PF15461.6 gi|55378777|ref|YP_136627.1| - 8e-87 291.1 19.7 1.1e-86 290.7 19.7 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase SQS_PSY PF00494.19 gi|55378779|ref|YP_136629.1| - 2.1e-64 217.6 8.0 2.6e-64 217.3 8.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase BAT PF15915.5 gi|55378780|ref|YP_136630.1| - 6.9e-41 139.7 6.7 6.9e-41 139.7 6.7 2.6 3 1 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|55378780|ref|YP_136630.1| - 8.9e-17 60.6 0.0 1.9e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|55378780|ref|YP_136630.1| - 2.2e-15 57.2 1.1 5.2e-15 56.0 1.1 1.7 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|55378780|ref|YP_136630.1| - 7.5e-12 45.5 0.1 2.3e-11 43.9 0.1 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|55378780|ref|YP_136630.1| - 1.1e-06 29.1 1.1 3e-06 27.6 0.4 2.1 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|55378780|ref|YP_136630.1| - 4.4e-06 27.3 0.1 1.4e-05 25.7 0.1 1.9 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|55378780|ref|YP_136630.1| - 1.5e-05 25.2 0.0 3.6e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|55378780|ref|YP_136630.1| - 0.0032 17.4 0.0 0.0095 15.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|55378780|ref|YP_136630.1| - 0.015 15.4 0.0 0.039 14.0 0.0 1.7 1 0 0 1 1 1 0 PAS domain DUF2116 PF09889.9 gi|55378781|ref|YP_136631.1| - 0.081 12.9 0.4 0.12 12.4 0.4 1.4 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RNB PF00773.19 gi|55378782|ref|YP_136632.1| - 7.9e-80 268.6 0.0 1.4e-78 264.6 0.0 2.0 1 1 0 1 1 1 1 RNB domain ABC_tran PF00005.27 gi|55378783|ref|YP_136633.1| - 4.5e-29 101.7 0.0 5.9e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378783|ref|YP_136633.1| - 3.3e-17 63.3 1.1 1.6e-12 47.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|55378783|ref|YP_136633.1| - 0.0026 17.5 0.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|55378783|ref|YP_136633.1| - 0.0065 17.0 0.0 0.0076 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55378783|ref|YP_136633.1| - 0.064 13.7 0.0 0.24 11.8 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|55378783|ref|YP_136633.1| - 0.39 9.3 0.3 4.4 5.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF885 PF05960.11 gi|55378785|ref|YP_136635.1| - 0.0059 16.3 5.0 0.0075 16.0 5.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) Lactamase_B PF00753.27 gi|55378786|ref|YP_136636.1| - 3.5e-11 43.5 10.7 1e-09 38.7 10.7 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|55378786|ref|YP_136636.1| - 2.7e-06 27.8 0.0 4.7e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|55378786|ref|YP_136636.1| - 0.0089 15.6 1.1 0.018 14.6 1.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|55378786|ref|YP_136636.1| - 0.0092 15.9 0.0 0.051 13.5 0.0 2.1 3 0 0 3 3 3 1 Beta-lactamase superfamily domain HTH_20 PF12840.7 gi|55378787|ref|YP_136637.1| - 0.0075 16.3 0.2 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3107 PF11305.8 gi|55378787|ref|YP_136637.1| - 0.02 15.1 0.5 0.049 13.9 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3107) GGDEF_2 PF17853.1 gi|55378787|ref|YP_136637.1| - 0.022 15.0 0.2 0.03 14.6 0.2 1.3 1 1 0 1 1 1 0 GGDEF-like domain CspB_prodomain PF18425.1 gi|55378788|ref|YP_136638.1| - 0.047 13.7 0.1 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 Csp protease B prodomain TALPID3 PF15324.6 gi|55378788|ref|YP_136638.1| - 1.6 6.3 9.0 2 6.0 9.0 1.0 1 0 0 1 1 1 0 Hedgehog signalling target PKD PF00801.20 gi|55378789|ref|YP_136639.1| - 1.3e-07 31.3 9.2 0.00033 20.4 1.1 2.8 2 0 0 2 2 2 2 PKD domain ChitinaseA_N PF08329.10 gi|55378789|ref|YP_136639.1| - 0.0022 17.6 6.4 0.082 12.5 0.1 2.7 3 0 0 3 3 3 2 Chitinase A, N-terminal domain He_PIG PF05345.12 gi|55378789|ref|YP_136639.1| - 0.0093 16.1 7.3 0.29 11.4 1.4 3.3 2 1 0 2 2 2 2 Putative Ig domain Y_Y_Y PF07495.13 gi|55378789|ref|YP_136639.1| - 0.043 13.8 0.0 0.23 11.4 0.0 2.2 2 0 0 2 2 2 0 Y_Y_Y domain Cadherin PF00028.17 gi|55378789|ref|YP_136639.1| - 0.28 11.6 1.6 3 8.4 0.1 2.8 2 1 1 3 3 3 0 Cadherin domain Ig_3 PF13927.6 gi|55378789|ref|YP_136639.1| - 0.38 11.4 3.6 0.45 11.2 0.0 2.8 3 0 0 3 3 3 0 Immunoglobulin domain DUF11 PF01345.18 gi|55378789|ref|YP_136639.1| - 0.44 10.9 6.8 34 4.8 7.1 2.9 1 1 2 3 3 3 0 Domain of unknown function DUF11 Anti-TRAP PF15777.5 gi|55378790|ref|YP_136640.1| - 0.00043 20.2 4.2 0.0019 18.1 0.9 3.1 3 0 0 3 3 3 1 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|55378790|ref|YP_136640.1| - 0.003 17.6 1.2 0.11 12.6 0.3 2.3 2 0 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|55378790|ref|YP_136640.1| - 0.0034 17.5 5.1 0.028 14.5 1.8 2.4 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|55378790|ref|YP_136640.1| - 0.016 15.2 4.1 0.051 13.6 0.3 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNHCP PF12647.7 gi|55378790|ref|YP_136640.1| - 0.099 12.6 1.0 0.73 9.9 0.3 2.2 2 0 0 2 2 2 0 RNHCP domain zf_UBZ PF18439.1 gi|55378790|ref|YP_136640.1| - 0.14 11.8 5.3 27 4.4 0.2 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|55378790|ref|YP_136640.1| - 0.15 12.0 0.2 0.15 12.0 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF1660 PF07874.11 gi|55378790|ref|YP_136640.1| - 0.23 12.0 0.5 1.4 9.5 0.5 2.1 1 1 0 1 1 1 0 Prophage protein (DUF1660) zf-ISL3 PF14690.6 gi|55378790|ref|YP_136640.1| - 0.51 11.0 3.0 55 4.5 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.16 gi|55378790|ref|YP_136640.1| - 0.57 10.1 4.0 59 3.7 0.1 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|55378790|ref|YP_136640.1| - 0.88 9.1 9.2 2.2 7.9 0.1 4.0 4 0 0 4 4 3 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|55378790|ref|YP_136640.1| - 0.99 9.3 7.3 3.2 7.7 0.5 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.10 gi|55378790|ref|YP_136640.1| - 1.6 8.5 5.7 7.3 6.4 0.3 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|55378790|ref|YP_136640.1| - 1.6 8.5 5.1 43 4.0 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger PADR1 PF08063.12 gi|55378790|ref|YP_136640.1| - 1.6 8.5 4.2 7.5 6.4 0.1 3.0 3 0 0 3 3 3 0 PADR1 (NUC008) domain Zn_Tnp_IS1595 PF12760.7 gi|55378790|ref|YP_136640.1| - 3.1 7.8 6.5 89 3.2 4.3 3.0 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|55378790|ref|YP_136640.1| - 3.3 7.7 5.9 67 3.5 2.2 3.1 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|55378790|ref|YP_136640.1| - 4.5 7.6 7.9 32 4.9 0.5 3.5 2 1 1 3 3 3 0 zinc-ribbon DUF5611 PF18446.1 gi|55378791|ref|YP_136641.1| - 2.5e-28 98.9 0.3 2.9e-28 98.8 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) ComR_TPR PF18710.1 gi|55378791|ref|YP_136641.1| - 0.0064 16.1 0.0 0.0097 15.5 0.0 1.2 1 0 0 1 1 1 1 ComR tetratricopeptide ABC2_membrane PF01061.24 gi|55378792|ref|YP_136642.1| - 6.5e-26 91.1 20.8 8e-26 90.8 20.8 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|55378792|ref|YP_136642.1| - 0.091 11.9 19.4 0.053 12.6 17.7 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|55378793|ref|YP_136643.1| - 7.5e-32 110.7 0.0 1.2e-31 110.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378793|ref|YP_136643.1| - 4.9e-13 49.6 0.8 1.2e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|55378793|ref|YP_136643.1| - 7.4e-07 29.8 0.0 2e-06 28.4 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) DLIC PF05783.11 gi|55378793|ref|YP_136643.1| - 0.0015 17.5 0.0 0.0022 16.9 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|55378793|ref|YP_136643.1| - 0.002 17.9 0.1 0.037 13.7 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|55378793|ref|YP_136643.1| - 0.0062 17.1 0.1 0.01 16.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|55378793|ref|YP_136643.1| - 0.0074 16.0 0.0 0.09 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|55378793|ref|YP_136643.1| - 0.008 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase NTPase_1 PF03266.15 gi|55378793|ref|YP_136643.1| - 0.03 14.2 0.1 0.3 11.0 0.0 2.2 2 1 0 2 2 2 0 NTPase IstB_IS21 PF01695.17 gi|55378793|ref|YP_136643.1| - 0.033 13.9 0.1 9.2 6.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|55378793|ref|YP_136643.1| - 0.033 13.9 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|55378793|ref|YP_136643.1| - 0.065 13.3 0.0 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|55378793|ref|YP_136643.1| - 0.071 12.5 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IIGP PF05049.13 gi|55378793|ref|YP_136643.1| - 0.094 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_27 PF13514.6 gi|55378793|ref|YP_136643.1| - 0.11 12.1 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|55378793|ref|YP_136643.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|55378793|ref|YP_136643.1| - 0.15 11.8 0.0 0.63 9.8 0.0 2.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 gi|55378793|ref|YP_136643.1| - 0.29 10.8 0.0 4.3 6.9 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain SepF PF04472.12 gi|55378795|ref|YP_136644.1| - 1.3e-13 51.0 1.6 2.3e-13 50.2 1.6 1.4 1 0 0 1 1 1 1 Cell division protein SepF PUA PF01472.20 gi|55378796|ref|YP_136646.1| - 6.5e-18 64.5 0.9 1.1e-17 63.7 0.9 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|55378796|ref|YP_136646.1| - 0.017 15.4 0.1 0.027 14.7 0.1 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain Peripla_BP_2 PF01497.18 gi|55378797|ref|YP_136647.1| - 5.7e-25 88.3 0.1 7.7e-25 87.8 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein UBM PF14377.6 gi|55378797|ref|YP_136647.1| - 0.14 11.6 0.8 4.3 6.9 0.0 2.7 2 0 0 2 2 2 0 Ubiquitin binding region CPP1-like PF11833.8 gi|55378798|ref|YP_136648.1| - 0.014 15.1 0.7 0.023 14.4 0.7 1.3 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF3094 PF11293.8 gi|55378798|ref|YP_136648.1| - 0.056 13.2 2.4 0.056 13.2 2.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3094) DUF2897 PF11446.8 gi|55378798|ref|YP_136648.1| - 2.6 8.0 4.6 0.6 10.0 1.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) ThiF PF00899.21 gi|55378799|ref|YP_136649.1| - 3.5e-67 226.3 0.0 4.5e-67 226.0 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|55378799|ref|YP_136649.1| - 0.002 18.4 1.9 0.01 16.1 1.9 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PglD_N PF17836.1 gi|55378799|ref|YP_136649.1| - 0.0035 17.9 0.2 0.0061 17.2 0.2 1.4 1 0 0 1 1 1 1 PglD N-terminal domain Shikimate_DH PF01488.20 gi|55378799|ref|YP_136649.1| - 0.033 14.3 0.1 0.075 13.1 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|55378799|ref|YP_136649.1| - 0.078 13.4 0.1 0.2 12.1 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding MCPsignal PF00015.21 gi|55378800|ref|YP_136650.1| - 3.9e-50 170.0 48.6 2.2e-47 161.1 29.7 3.7 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|55378800|ref|YP_136650.1| - 2.9e-07 30.6 33.2 0.0012 19.0 3.8 4.6 2 2 1 4 4 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|55378800|ref|YP_136650.1| - 2.3e-06 27.7 34.7 0.0017 18.4 3.6 4.3 2 2 2 4 4 4 4 Laminin Domain II Spc7 PF08317.11 gi|55378800|ref|YP_136650.1| - 0.0019 17.2 27.8 0.028 13.3 10.6 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein Syntaxin_2 PF14523.6 gi|55378800|ref|YP_136650.1| - 0.0025 18.1 18.6 0.29 11.5 0.2 4.4 2 2 1 3 3 3 2 Syntaxin-like protein LPP PF04728.13 gi|55378800|ref|YP_136650.1| - 0.0032 17.8 3.6 0.0032 17.8 3.6 5.8 4 2 2 6 6 4 1 Lipoprotein leucine-zipper WXG100 PF06013.12 gi|55378800|ref|YP_136650.1| - 0.0044 17.2 30.2 3.7 7.8 4.5 6.3 2 2 2 5 5 5 0 Proteins of 100 residues with WXG CorA PF01544.18 gi|55378800|ref|YP_136650.1| - 0.0059 16.0 20.2 0.019 14.3 7.2 2.5 2 1 0 2 2 2 2 CorA-like Mg2+ transporter protein TMPIT PF07851.13 gi|55378800|ref|YP_136650.1| - 0.0062 15.8 11.3 0.12 11.6 2.6 2.6 2 1 0 2 2 2 2 TMPIT-like protein DUF1664 PF07889.12 gi|55378800|ref|YP_136650.1| - 0.0085 16.1 29.8 0.038 14.0 6.5 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|55378800|ref|YP_136650.1| - 0.0095 16.1 22.8 0.028 14.6 6.2 3.5 2 2 2 4 4 4 2 Fibrinogen alpha/beta chain family DASH_Duo1 PF08651.10 gi|55378800|ref|YP_136650.1| - 0.01 15.6 20.5 0.08 12.7 0.9 5.2 4 1 1 5 5 5 1 DASH complex subunit Duo1 ATG16 PF08614.11 gi|55378800|ref|YP_136650.1| - 0.012 15.8 20.7 0.037 14.3 4.9 2.4 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) BLOC1_2 PF10046.9 gi|55378800|ref|YP_136650.1| - 0.014 15.6 29.4 0.26 11.6 2.5 4.7 2 2 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF745 PF05335.13 gi|55378800|ref|YP_136650.1| - 0.017 14.9 32.1 0.13 12.0 0.8 4.0 1 1 2 4 4 4 0 Protein of unknown function (DUF745) T3SSipB PF16535.5 gi|55378800|ref|YP_136650.1| - 0.032 14.7 31.4 0.78 10.2 10.1 3.3 1 1 2 3 3 3 0 Type III cell invasion protein SipB COG5 PF10392.9 gi|55378800|ref|YP_136650.1| - 0.035 14.3 12.2 0.037 14.2 2.6 3.4 2 2 2 4 4 4 0 Golgi transport complex subunit 5 Gp-FAR-1 PF05823.12 gi|55378800|ref|YP_136650.1| - 0.04 14.3 5.7 0.32 11.3 0.3 3.0 2 1 1 3 3 3 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) TPR_MLP1_2 PF07926.12 gi|55378800|ref|YP_136650.1| - 0.047 13.8 29.2 0.73 9.9 13.3 2.7 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein KxDL PF10241.9 gi|55378800|ref|YP_136650.1| - 0.052 13.8 4.7 0.73 10.1 0.6 3.4 2 2 1 3 3 3 0 Uncharacterized conserved protein Sec34 PF04136.15 gi|55378800|ref|YP_136650.1| - 0.054 13.4 18.6 1.1 9.2 1.7 4.3 2 2 3 5 5 5 0 Sec34-like family FUSC PF04632.12 gi|55378800|ref|YP_136650.1| - 0.091 11.3 13.7 0.25 9.8 5.4 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family UPF0242 PF06785.11 gi|55378800|ref|YP_136650.1| - 0.093 12.8 21.5 0.78 9.8 6.5 2.9 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Gene66 PF02053.15 gi|55378800|ref|YP_136650.1| - 0.13 11.9 0.3 0.34 10.5 0.1 1.8 2 1 0 2 2 1 0 Gene 66 (IR5) protein CENP-K PF11802.8 gi|55378800|ref|YP_136650.1| - 0.23 11.0 8.4 7.3 6.1 8.3 2.2 1 1 0 1 1 1 0 Centromere-associated protein K YkyA PF10368.9 gi|55378800|ref|YP_136650.1| - 0.24 11.1 35.5 0.77 9.4 2.9 3.8 1 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Mod_r PF07200.13 gi|55378800|ref|YP_136650.1| - 0.28 11.3 18.7 1.8 8.7 4.1 3.1 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein APG17 PF04108.12 gi|55378800|ref|YP_136650.1| - 0.34 10.0 25.7 0.37 9.9 0.8 3.9 1 1 2 3 3 3 0 Autophagy protein Apg17 HMMR_N PF15905.5 gi|55378800|ref|YP_136650.1| - 0.43 10.0 20.0 0.94 8.9 7.4 2.5 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Vps51 PF08700.11 gi|55378800|ref|YP_136650.1| - 0.45 10.6 12.8 0.39 10.8 0.6 4.5 4 1 0 5 5 4 0 Vps51/Vps67 Prominin PF05478.11 gi|55378800|ref|YP_136650.1| - 0.47 8.4 19.5 0.27 9.1 13.0 2.1 1 1 1 2 2 2 0 Prominin DASH_Dam1 PF08653.10 gi|55378800|ref|YP_136650.1| - 0.48 10.3 6.2 36 4.2 0.0 4.5 4 1 0 4 4 4 0 DASH complex subunit Dam1 Mce4_CUP1 PF11887.8 gi|55378800|ref|YP_136650.1| - 0.49 9.8 21.2 0.46 9.9 4.9 3.6 1 1 3 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative AIP3 PF03915.13 gi|55378800|ref|YP_136650.1| - 0.53 9.3 25.7 0.36 9.9 12.3 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 TRPM_tetra PF16519.5 gi|55378800|ref|YP_136650.1| - 0.58 10.3 10.7 0.06 13.5 2.2 3.2 3 1 0 3 3 2 0 Tetramerisation domain of TRPM NPV_P10 PF05531.12 gi|55378800|ref|YP_136650.1| - 0.59 10.6 34.2 2.4 8.7 4.9 5.4 2 2 3 5 5 5 0 Nucleopolyhedrovirus P10 protein ERM PF00769.19 gi|55378800|ref|YP_136650.1| - 0.86 9.4 24.8 4.1 7.2 11.2 2.3 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Occludin_ELL PF07303.13 gi|55378800|ref|YP_136650.1| - 1.1 10.1 8.2 21 5.9 0.2 4.2 1 1 2 4 4 4 0 Occludin homology domain FlgN PF05130.12 gi|55378800|ref|YP_136650.1| - 1.1 9.8 23.5 4.1 7.9 4.1 3.7 1 1 2 4 4 4 0 FlgN protein Syntaxin-6_N PF09177.11 gi|55378800|ref|YP_136650.1| - 1.1 9.9 25.3 5.4 7.6 4.7 4.2 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|55378800|ref|YP_136650.1| - 1.1 9.5 24.8 0.45 10.8 3.0 3.8 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain BORCS7 PF16088.5 gi|55378800|ref|YP_136650.1| - 1.6 9.1 14.7 0.61 10.4 5.0 3.1 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 7 ING PF12998.7 gi|55378800|ref|YP_136650.1| - 1.7 9.3 13.5 17 6.1 2.1 4.0 1 1 2 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Cauli_AT PF03233.13 gi|55378800|ref|YP_136650.1| - 1.7 8.5 19.2 0.74 9.7 2.5 3.5 2 1 2 4 4 3 0 Aphid transmission protein DUF2913 PF11140.8 gi|55378800|ref|YP_136650.1| - 1.9 8.2 5.8 1.7 8.4 1.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2913) AATF-Che1 PF13339.6 gi|55378800|ref|YP_136650.1| - 2 9.1 14.1 1.3 9.7 4.4 2.8 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Fez1 PF06818.15 gi|55378800|ref|YP_136650.1| - 2.2 8.7 20.6 1.5 9.3 5.5 2.2 1 1 0 2 2 2 0 Fez1 DUF2203 PF09969.9 gi|55378800|ref|YP_136650.1| - 2.3 9.0 21.8 9.3 7.0 1.7 3.8 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF489 PF04356.12 gi|55378800|ref|YP_136650.1| - 2.6 8.0 9.3 1.6 8.7 1.7 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF489) COG2 PF06148.11 gi|55378800|ref|YP_136650.1| - 3.1 7.9 21.4 5.8 7.0 1.4 4.4 1 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 RAC_head PF16717.5 gi|55378800|ref|YP_136650.1| - 3.2 8.8 21.7 0.35 11.9 3.0 3.7 2 1 1 3 3 3 0 Ribosome-associated complex head domain DUF4200 PF13863.6 gi|55378800|ref|YP_136650.1| - 3.2 8.2 16.5 2.7 8.4 2.2 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Barstar PF01337.18 gi|55378800|ref|YP_136650.1| - 3.2 7.8 6.1 5.8 7.0 0.3 3.7 3 1 1 4 4 3 0 Barstar (barnase inhibitor) FH2 PF02181.23 gi|55378800|ref|YP_136650.1| - 3.7 6.6 11.5 3 6.9 2.2 2.5 1 1 0 2 2 2 0 Formin Homology 2 Domain SpecificRecomb PF10136.9 gi|55378800|ref|YP_136650.1| - 3.7 5.7 11.1 2.5 6.3 5.9 2.0 1 1 1 2 2 2 0 Site-specific recombinase TMF_TATA_bd PF12325.8 gi|55378800|ref|YP_136650.1| - 4 7.7 26.0 2.7 8.2 5.6 3.6 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding zf-C4H2 PF10146.9 gi|55378800|ref|YP_136650.1| - 4.9 7.4 22.4 1.1 9.6 6.6 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein DUF3958 PF13125.6 gi|55378800|ref|YP_136650.1| - 5.4 7.3 12.4 3.3 8.0 0.4 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF3958) DUF2205 PF10224.9 gi|55378800|ref|YP_136650.1| - 5.7 7.0 15.7 8.7 6.4 1.4 4.3 2 1 2 4 4 4 0 Short coiled-coil protein Sec20 PF03908.13 gi|55378800|ref|YP_136650.1| - 6.2 6.8 17.3 0.64 10.0 0.7 4.4 2 2 2 4 4 4 0 Sec20 DUF1759 PF03564.15 gi|55378800|ref|YP_136650.1| - 6.4 6.7 13.5 4.9 7.1 0.4 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF1759) MAD PF05557.13 gi|55378800|ref|YP_136650.1| - 6.6 5.0 22.8 1.9 6.7 13.1 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein BAR_2 PF10455.9 gi|55378800|ref|YP_136650.1| - 7 5.7 17.6 8.9 5.4 7.5 2.6 1 1 1 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking ISG65-75 PF11727.8 gi|55378800|ref|YP_136650.1| - 7.5 5.7 30.2 1.7 7.8 7.9 3.1 1 1 2 3 3 3 0 Invariant surface glycoprotein YtxH PF12732.7 gi|55378800|ref|YP_136650.1| - 7.9 7.1 31.9 12 6.6 0.5 5.4 1 1 1 2 2 1 0 YtxH-like protein DUF4795 PF16043.5 gi|55378800|ref|YP_136650.1| - 8.4 5.9 21.5 4.3 6.9 17.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) SKA1 PF07160.12 gi|55378800|ref|YP_136650.1| - 9.3 6.0 18.1 6 6.6 0.1 3.8 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 1 Peptidase_M32 PF02074.15 gi|55378801|ref|YP_136651.1| - 3.3e-172 573.7 0.0 3.7e-172 573.5 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase FmdA_AmdA PF03069.15 gi|55378802|ref|YP_136652.1| - 5.6e-28 97.8 0.2 1.2e-18 67.1 0.0 2.5 1 1 1 2 2 2 2 Acetamidase/Formamidase family ANTAR PF03861.14 gi|55378802|ref|YP_136652.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 ANTAR domain TAT_signal PF10518.9 gi|55378802|ref|YP_136652.1| - 0.16 11.8 3.7 0.29 11.0 3.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_M20 PF01546.28 gi|55378803|ref|YP_136653.1| - 2.6e-26 92.6 4.9 3.2e-26 92.3 4.9 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|55378803|ref|YP_136653.1| - 4.1e-15 55.6 0.1 8e-15 54.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain UvdE PF03851.14 gi|55378804|ref|YP_136654.1| - 2.9e-54 184.2 0.0 3.4e-54 184.0 0.0 1.0 1 0 0 1 1 1 1 UV-endonuclease UvdE T2SSE PF00437.20 gi|55378805|ref|YP_136655.1| - 1.1e-10 41.1 0.0 1.8e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|55378805|ref|YP_136655.1| - 0.00033 20.4 0.0 0.00061 19.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein PIN PF01850.21 gi|55378805|ref|YP_136655.1| - 0.0024 18.4 0.0 0.0052 17.3 0.0 1.6 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|55378805|ref|YP_136655.1| - 0.0032 17.2 0.1 0.013 15.3 0.1 2.1 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.6 gi|55378805|ref|YP_136655.1| - 0.0051 17.2 0.1 0.029 14.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|55378805|ref|YP_136655.1| - 0.0065 16.6 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55378805|ref|YP_136655.1| - 0.012 15.3 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Thymidylate_kin PF02223.17 gi|55378805|ref|YP_136655.1| - 0.028 14.1 0.0 0.11 12.2 0.0 1.8 1 1 1 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.15 gi|55378805|ref|YP_136655.1| - 0.039 13.9 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 NTPase ATPase PF06745.13 gi|55378805|ref|YP_136655.1| - 0.051 12.9 0.0 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 KaiC FliMN_C PF01052.20 gi|55378805|ref|YP_136655.1| - 0.054 13.5 0.1 5.4 7.1 0.0 2.7 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term Zeta_toxin PF06414.12 gi|55378805|ref|YP_136655.1| - 0.077 12.3 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|55378805|ref|YP_136655.1| - 0.1 12.9 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|55378805|ref|YP_136655.1| - 0.12 13.0 0.0 0.28 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|55378805|ref|YP_136655.1| - 0.18 11.3 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region YqcI_YcgG PF08892.11 gi|55378806|ref|YP_136656.1| - 3.2e-77 259.1 0.0 3.7e-77 258.9 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|55378807|ref|YP_136657.1| - 9.4e-38 130.1 0.0 1.1e-37 129.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family HTH_24 PF13412.6 gi|55378808|ref|YP_136658.1| - 0.00068 19.1 0.0 0.00099 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|55378808|ref|YP_136658.1| - 0.002 17.9 0.1 0.0027 17.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55378808|ref|YP_136658.1| - 0.015 15.1 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|55378808|ref|YP_136658.1| - 0.017 15.1 0.1 0.037 14.0 0.1 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|55378808|ref|YP_136658.1| - 0.036 14.0 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|55378808|ref|YP_136658.1| - 0.05 13.3 0.1 0.076 12.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|55378808|ref|YP_136658.1| - 0.13 12.8 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.27 gi|55378810|ref|YP_136660.1| - 3.1e-38 131.4 0.0 2e-20 73.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|55378810|ref|YP_136660.1| - 7.9e-13 48.3 3.0 0.0029 17.1 0.0 4.2 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|55378810|ref|YP_136660.1| - 7.4e-12 45.7 0.3 0.031 14.1 0.0 4.2 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|55378810|ref|YP_136660.1| - 7.1e-11 41.7 0.7 1.5e-10 40.7 0.7 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_16 PF13191.6 gi|55378810|ref|YP_136660.1| - 7.8e-07 29.6 0.1 0.044 14.2 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|55378810|ref|YP_136660.1| - 1.9e-06 28.3 0.0 0.064 13.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|55378810|ref|YP_136660.1| - 2.4e-06 27.6 0.0 0.19 11.6 0.0 3.2 2 1 1 3 3 3 2 Rad17 P-loop domain AAA_22 PF13401.6 gi|55378810|ref|YP_136660.1| - 5.9e-06 26.6 0.0 0.0071 16.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|55378810|ref|YP_136660.1| - 8e-06 26.2 0.0 0.17 12.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 gi|55378810|ref|YP_136660.1| - 2.9e-05 24.6 0.0 0.083 13.4 0.0 3.1 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|55378810|ref|YP_136660.1| - 4.6e-05 23.2 0.0 0.056 13.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|55378810|ref|YP_136660.1| - 4.7e-05 23.4 0.0 0.088 12.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|55378810|ref|YP_136660.1| - 4.7e-05 24.0 0.2 0.21 12.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.12 gi|55378810|ref|YP_136660.1| - 0.00027 20.7 0.1 0.33 10.7 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Fer4_6 PF12837.7 gi|55378810|ref|YP_136660.1| - 0.00034 20.5 12.6 0.0051 16.8 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_33 PF13671.6 gi|55378810|ref|YP_136660.1| - 0.00035 20.8 0.0 0.15 12.3 0.1 2.8 2 1 0 2 2 2 1 AAA domain Fer4 PF00037.27 gi|55378810|ref|YP_136660.1| - 0.00065 19.4 1.3 0.00065 19.4 1.3 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain NACHT PF05729.12 gi|55378810|ref|YP_136660.1| - 0.0007 19.5 0.2 1.5 8.7 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_15 PF13175.6 gi|55378810|ref|YP_136660.1| - 0.002 17.9 0.1 1.2 8.8 0.0 2.9 2 1 0 3 3 3 1 AAA ATPase domain NB-ARC PF00931.22 gi|55378810|ref|YP_136660.1| - 0.0028 16.9 0.0 0.19 10.9 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.6 gi|55378810|ref|YP_136660.1| - 0.0055 17.0 0.4 2.2 8.5 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|55378810|ref|YP_136660.1| - 0.0056 16.7 0.0 7 6.7 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|55378810|ref|YP_136660.1| - 0.0057 16.4 0.2 3.6 7.4 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|55378810|ref|YP_136660.1| - 0.0069 16.0 0.0 1.7 8.3 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|55378810|ref|YP_136660.1| - 0.0093 16.2 0.0 6.4 7.1 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|55378810|ref|YP_136660.1| - 0.015 15.3 0.1 5.8 6.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|55378810|ref|YP_136660.1| - 0.023 14.4 0.0 8.6 6.0 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase Fer4_10 PF13237.6 gi|55378810|ref|YP_136660.1| - 0.028 14.5 11.2 0.4 10.8 0.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|55378810|ref|YP_136660.1| - 0.047 13.6 0.9 16 5.3 0.0 3.1 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|55378810|ref|YP_136660.1| - 0.062 13.4 0.0 0.74 9.9 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|55378810|ref|YP_136660.1| - 0.071 12.8 0.1 3.7 7.2 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Fer4_7 PF12838.7 gi|55378810|ref|YP_136660.1| - 0.072 13.7 10.3 0.19 12.3 10.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|55378810|ref|YP_136660.1| - 0.083 12.5 2.0 5.5 6.5 0.0 3.3 4 0 0 4 4 3 0 AAA domain CLP1_P PF16575.5 gi|55378810|ref|YP_136660.1| - 0.087 12.6 0.0 4.6 7.0 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF87 PF01935.17 gi|55378810|ref|YP_136660.1| - 0.094 12.8 0.1 23 5.0 0.0 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain TsaE PF02367.17 gi|55378810|ref|YP_136660.1| - 0.11 12.5 0.0 27 4.8 0.0 2.9 2 1 1 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|55378810|ref|YP_136660.1| - 0.14 11.8 0.6 7.6 6.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain Fer4_9 PF13187.6 gi|55378810|ref|YP_136660.1| - 0.2 11.9 8.8 0.42 10.8 8.8 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55378810|ref|YP_136660.1| - 0.39 10.9 11.1 0.11 12.7 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|55378810|ref|YP_136660.1| - 0.68 10.1 7.7 1.3 9.2 7.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|55378810|ref|YP_136660.1| - 6 7.9 11.1 16 6.6 11.1 1.8 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Peptidase_M54 PF07998.11 gi|161723233|ref|YP_136662.2| - 7.3e-21 75.0 0.0 9.2e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|161723233|ref|YP_136662.2| - 8.1e-05 22.5 0.0 8.1e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Matrixin DUF4953 PF16313.5 gi|161723233|ref|YP_136662.2| - 0.00022 20.5 0.1 0.00032 20.0 0.1 1.2 1 0 0 1 1 1 1 Met-zincin Reprolysin_4 PF13583.6 gi|161723233|ref|YP_136662.2| - 0.00038 20.2 0.0 0.00044 20.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|161723233|ref|YP_136662.2| - 0.00062 20.3 0.0 0.00084 19.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|161723233|ref|YP_136662.2| - 0.00084 19.3 0.0 0.00084 19.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|161723233|ref|YP_136662.2| - 0.0012 17.8 0.1 0.0016 17.4 0.1 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_5 PF13688.6 gi|161723233|ref|YP_136662.2| - 0.0029 17.8 0.0 0.0034 17.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Metallopep PF12044.8 gi|161723233|ref|YP_136662.2| - 0.053 12.1 0.1 0.076 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Zincin_1 PF06262.11 gi|161723233|ref|YP_136662.2| - 0.062 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Zincin-like metallopeptidase Peptidase_M43 PF05572.13 gi|161723233|ref|YP_136662.2| - 0.084 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M57 PF12388.8 gi|161723233|ref|YP_136662.2| - 0.1 12.2 0.0 0.26 10.9 0.0 1.7 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Hydrolase PF00702.26 gi|55378812|ref|YP_136663.1| - 2e-10 41.3 3.1 2.1e-09 38.0 3.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|55378812|ref|YP_136663.1| - 2.9e-09 37.3 0.0 9.7e-08 32.3 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55378812|ref|YP_136663.1| - 0.00032 20.7 3.0 0.00036 20.5 0.6 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like Yip1 PF04893.17 gi|55378814|ref|YP_136664.1| - 0.47 10.2 14.6 0.62 9.8 2.9 2.2 1 1 1 2 2 2 0 Yip1 domain F420_oxidored PF03807.17 gi|55378815|ref|YP_136665.1| - 1.7e-17 63.8 0.3 2.9e-17 63.0 0.3 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|55378815|ref|YP_136665.1| - 0.0007 19.3 0.1 0.0011 18.6 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 gi|55378815|ref|YP_136665.1| - 0.0009 19.7 0.1 0.0014 19.1 0.1 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|55378815|ref|YP_136665.1| - 0.0016 18.7 0.4 0.0039 17.5 0.2 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|55378815|ref|YP_136665.1| - 0.0034 17.4 0.0 0.0053 16.7 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KR PF08659.10 gi|55378815|ref|YP_136665.1| - 0.0047 16.9 0.1 0.0082 16.1 0.1 1.4 1 0 0 1 1 1 1 KR domain DUF2184 PF09950.9 gi|55378815|ref|YP_136665.1| - 0.011 15.2 0.2 0.015 14.7 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) Rossmann-like PF10727.9 gi|55378815|ref|YP_136665.1| - 0.056 13.3 0.2 0.1 12.5 0.2 1.5 1 0 0 1 1 1 0 Rossmann-like domain Response_reg PF00072.24 gi|55378816|ref|YP_136666.1| - 5.3e-21 74.9 0.0 8.1e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|55378816|ref|YP_136666.1| - 1.2e-06 28.8 0.0 3.1e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold OKR_DC_1_N PF03709.15 gi|55378816|ref|YP_136666.1| - 0.00096 19.4 0.1 0.0023 18.2 0.0 1.7 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.12 gi|55378816|ref|YP_136666.1| - 0.0024 18.1 0.1 0.0057 16.9 0.0 1.7 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|55378816|ref|YP_136666.1| - 0.0082 16.4 0.0 0.021 15.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF4772 PF15997.5 gi|55378816|ref|YP_136666.1| - 0.12 13.0 0.1 0.2 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4772) Thioredoxin PF00085.20 gi|55378817|ref|YP_136667.1| - 5.2e-21 74.6 0.0 6.2e-21 74.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55378817|ref|YP_136667.1| - 7.8e-08 32.7 0.4 8.8e-07 29.4 0.4 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|55378817|ref|YP_136667.1| - 6.3e-06 26.0 0.1 7.3e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|55378817|ref|YP_136667.1| - 1.8e-05 25.0 0.1 0.035 14.4 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like AhpC-TSA PF00578.21 gi|55378817|ref|YP_136667.1| - 0.00035 20.5 0.2 0.0016 18.3 0.2 1.7 1 1 0 1 1 1 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|55378817|ref|YP_136667.1| - 0.00061 20.0 0.1 0.0012 19.1 0.0 1.5 1 1 1 2 2 2 1 Glutaredoxin Redoxin PF08534.10 gi|55378817|ref|YP_136667.1| - 0.00076 19.2 0.4 0.041 13.6 0.0 2.0 1 1 1 2 2 2 1 Redoxin Thioredoxin_3 PF13192.6 gi|55378817|ref|YP_136667.1| - 0.00094 19.2 0.0 0.0011 19.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 gi|55378817|ref|YP_136667.1| - 0.0015 18.3 0.3 0.18 11.6 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain TraF PF13728.6 gi|55378817|ref|YP_136667.1| - 0.0015 18.4 0.0 0.0017 18.2 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF836 PF05768.14 gi|55378817|ref|YP_136667.1| - 0.011 16.1 0.1 0.013 15.9 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|55378817|ref|YP_136667.1| - 0.043 13.5 0.1 0.046 13.4 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin Sec61_beta PF03911.16 gi|55378818|ref|YP_136668.1| - 7.4e-15 54.7 0.0 8.7e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Sec61beta family DUF402 PF04167.13 gi|55378820|ref|YP_136670.1| - 1.1e-15 57.5 2.2 2.8e-15 56.2 2.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.23 gi|55378820|ref|YP_136670.1| - 2.5e-05 24.5 1.2 0.00012 22.3 0.1 2.7 2 1 0 2 2 2 1 S1 RNA binding domain S1_2 PF13509.6 gi|55378820|ref|YP_136670.1| - 0.058 13.5 0.2 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 S1 domain LVIVD PF08309.11 gi|55378821|ref|YP_136671.1| - 3.3e-12 45.5 2.2 2.8e-06 26.5 0.1 6.0 6 1 0 6 6 6 3 LVIVD repeat Beta_propel PF09826.9 gi|55378821|ref|YP_136671.1| - 0.00081 18.4 0.0 0.13 11.1 0.0 2.3 2 0 0 2 2 2 2 Beta propeller domain LOR PF04525.12 gi|55378822|ref|YP_136672.1| - 8e-07 28.8 1.0 0.0014 18.3 0.3 3.2 1 1 2 3 3 3 3 LURP-one-related Scramblase PF03803.15 gi|55378822|ref|YP_136672.1| - 0.072 12.4 0.0 10 5.4 0.0 2.3 1 1 1 2 2 2 0 Scramblase UvrA_inter PF17760.1 gi|55378823|ref|YP_136673.1| - 5.7e-32 110.0 0.0 2.2e-31 108.2 0.0 2.1 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|55378823|ref|YP_136673.1| - 8.6e-30 103.3 0.2 3.1e-27 95.1 0.0 3.3 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|55378823|ref|YP_136673.1| - 1.5e-21 77.4 0.0 1.9e-10 41.4 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|55378823|ref|YP_136673.1| - 8.4e-12 45.0 0.0 0.036 13.5 0.1 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55378823|ref|YP_136673.1| - 7.4e-09 35.2 0.0 0.0024 17.6 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55378823|ref|YP_136673.1| - 9.6e-07 29.3 0.6 0.026 14.9 0.0 3.6 4 0 0 4 4 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|55378823|ref|YP_136673.1| - 2.2e-06 27.7 7.1 0.016 15.0 0.0 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|55378823|ref|YP_136673.1| - 3.1e-06 27.1 0.1 0.011 15.4 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|55378823|ref|YP_136673.1| - 2.4e-05 24.6 0.2 0.25 11.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|55378823|ref|YP_136673.1| - 6.9e-05 22.3 0.1 0.094 12.1 0.0 3.2 3 0 0 3 3 3 1 KaiC AAA_25 PF13481.6 gi|55378823|ref|YP_136673.1| - 8.7e-05 22.2 0.0 0.78 9.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain RsgA_GTPase PF03193.16 gi|55378823|ref|YP_136673.1| - 0.00018 21.4 0.0 0.77 9.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|55378823|ref|YP_136673.1| - 0.00019 22.0 0.0 0.24 11.9 0.0 2.8 3 0 0 3 3 2 1 AAA domain Zn-ribbon_8 PF09723.10 gi|55378823|ref|YP_136673.1| - 0.0005 20.1 14.9 1.3 9.2 0.5 4.5 4 0 0 4 4 4 2 Zinc ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|55378823|ref|YP_136673.1| - 0.00056 20.2 12.0 0.066 13.6 1.6 3.8 4 0 0 4 4 3 1 DnaJ central domain AAA_33 PF13671.6 gi|55378823|ref|YP_136673.1| - 0.00074 19.7 0.0 2.2 8.4 0.0 3.3 4 0 0 4 4 3 2 AAA domain AAA_18 PF13238.6 gi|55378823|ref|YP_136673.1| - 0.0017 18.9 0.0 2.9 8.4 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|55378823|ref|YP_136673.1| - 0.0055 16.8 0.0 1.5 8.9 0.0 2.9 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.20 gi|55378823|ref|YP_136673.1| - 0.0059 16.5 0.1 5.3 6.9 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase cobW PF02492.19 gi|55378823|ref|YP_136673.1| - 0.01 15.4 0.2 1.3 8.6 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|55378823|ref|YP_136673.1| - 0.013 15.4 0.1 1.6 8.6 0.0 2.7 3 0 0 3 3 2 0 NACHT domain DUF2075 PF09848.9 gi|55378823|ref|YP_136673.1| - 0.02 14.2 0.0 3.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|55378823|ref|YP_136673.1| - 0.036 13.8 0.0 9.4 5.9 0.0 3.7 4 0 0 4 4 4 0 AAA domain Viral_helicase1 PF01443.18 gi|55378823|ref|YP_136673.1| - 0.043 13.5 0.0 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|55378823|ref|YP_136673.1| - 0.068 12.9 0.1 5.4 6.7 0.1 2.7 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|55378823|ref|YP_136673.1| - 0.11 12.4 0.0 21 4.9 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|55378823|ref|YP_136673.1| - 0.13 11.4 0.0 1.5 8.0 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain NMDAR2_C PF10565.9 gi|55378823|ref|YP_136673.1| - 0.23 10.3 0.0 0.39 9.5 0.0 1.3 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus DZR PF12773.7 gi|55378823|ref|YP_136673.1| - 0.3 11.1 9.2 5.2 7.2 0.3 4.1 4 0 0 4 4 4 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|55378823|ref|YP_136673.1| - 0.32 11.1 5.5 1.5 8.9 0.0 3.2 4 0 0 4 4 3 0 Transposase zinc-binding domain SLATT_2 PF18183.1 gi|55378824|ref|YP_136674.1| - 0.033 14.0 0.4 0.033 14.0 0.4 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 2 DUF1772 PF08592.11 gi|55378824|ref|YP_136674.1| - 3.8 7.8 19.2 0.081 13.2 1.2 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF1772) Peptidase_S9 PF00326.21 gi|55378825|ref|YP_136675.1| - 2.8e-44 151.1 0.1 4.2e-44 150.5 0.1 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|55378825|ref|YP_136675.1| - 1.1e-06 28.4 0.1 0.024 14.2 0.4 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9_N PF02897.15 gi|55378825|ref|YP_136675.1| - 5e-05 22.3 0.2 0.009 14.8 0.1 2.1 1 1 1 2 2 2 2 Prolyl oligopeptidase, N-terminal beta-propeller domain Peptidase_S28 PF05577.12 gi|55378825|ref|YP_136675.1| - 5.5e-05 22.1 0.0 8.4e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 Serine carboxypeptidase S28 Hydrolase_4 PF12146.8 gi|55378825|ref|YP_136675.1| - 8e-05 22.0 0.2 0.0096 15.2 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|55378825|ref|YP_136675.1| - 9.9e-05 22.1 0.3 0.0041 16.8 0.5 2.2 1 1 0 2 2 2 1 alpha/beta hydrolase fold PD40 PF07676.12 gi|55378825|ref|YP_136675.1| - 0.003 17.5 2.6 0.75 9.8 0.0 5.0 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat mRNA_cap_enzyme PF01331.19 gi|55378825|ref|YP_136675.1| - 0.0033 17.3 0.0 0.0061 16.4 0.0 1.3 1 0 0 1 1 1 1 mRNA capping enzyme, catalytic domain DLH PF01738.18 gi|55378825|ref|YP_136675.1| - 0.004 16.7 0.0 0.0094 15.5 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family DPPIV_N PF00930.21 gi|55378825|ref|YP_136675.1| - 0.015 14.1 0.0 7.3 5.2 0.0 3.0 2 1 1 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Pectate_lyase22 PF14583.6 gi|55378825|ref|YP_136675.1| - 0.048 12.3 0.4 0.19 10.4 0.2 2.0 2 0 0 2 2 2 0 Oligogalacturonate lyase Pentapeptide_4 PF13599.6 gi|55378826|ref|YP_136676.1| - 2.1e-23 82.3 0.9 2.2e-07 30.9 0.1 5.9 2 1 3 6 6 6 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|55378826|ref|YP_136676.1| - 1.5e-19 69.8 50.0 1.5e-06 28.3 10.0 9.9 3 3 8 11 11 11 9 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|55378826|ref|YP_136676.1| - 3.3e-12 45.8 14.4 0.013 15.2 0.3 8.0 4 2 4 9 9 9 6 Pentapeptide repeats (8 copies) Sortilin-Vps10 PF15902.5 gi|55378827|ref|YP_136677.1| - 5.3e-14 51.9 0.0 1.5e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 gi|55378827|ref|YP_136677.1| - 5.3e-07 29.2 0.3 0.0029 16.9 0.1 3.0 2 1 1 3 3 3 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 gi|55378827|ref|YP_136677.1| - 4.7e-06 25.8 16.7 0.16 12.1 0.2 5.9 6 0 0 6 6 6 3 BNR/Asp-box repeat DUF4185 PF13810.6 gi|55378827|ref|YP_136677.1| - 0.048 12.9 6.1 0.58 9.3 0.1 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4185) BNR_2 PF13088.6 gi|55378827|ref|YP_136677.1| - 1.5 8.1 7.6 3.3 6.9 0.1 3.8 3 2 1 5 5 5 0 BNR repeat-like domain DUF3040 PF11239.8 gi|55378828|ref|YP_136678.1| - 0.3 11.4 5.7 1.7 9.0 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) ETRAMP PF09716.10 gi|55378828|ref|YP_136678.1| - 0.39 10.8 1.2 5.3 7.2 0.1 2.1 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) SLATT_1 PF18181.1 gi|55378828|ref|YP_136678.1| - 0.68 9.9 3.5 0.4 10.6 0.3 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 RskA PF10099.9 gi|55378828|ref|YP_136678.1| - 8.4 6.6 7.3 8 6.7 0.5 2.0 2 0 0 2 2 2 0 Anti-sigma-K factor rskA DUF5518 PF17647.1 gi|55378829|ref|YP_136679.1| - 1.1e-20 73.9 22.9 1.5e-20 73.5 22.9 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Spo7_2_N PF15407.6 gi|55378829|ref|YP_136679.1| - 0.027 14.1 0.5 11 5.8 0.1 2.7 3 0 0 3 3 3 0 Sporulation protein family 7 YbgT_YccB PF08173.11 gi|55378829|ref|YP_136679.1| - 7.3 6.8 6.7 11 6.3 4.2 2.4 1 1 1 2 2 2 0 Membrane bound YbgT-like protein FAD_binding_3 PF01494.19 gi|55378830|ref|YP_136680.1| - 5.2e-18 65.4 2.3 5.5e-11 42.3 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|55378830|ref|YP_136680.1| - 1.2e-09 37.7 0.2 2e-06 27.1 0.2 2.1 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|55378830|ref|YP_136680.1| - 5e-09 36.2 2.2 6.7e-05 22.6 0.1 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|55378830|ref|YP_136680.1| - 1.4e-06 27.9 1.0 2.1e-06 27.4 1.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|55378830|ref|YP_136680.1| - 1.9e-06 26.9 0.0 5e-06 25.5 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|55378830|ref|YP_136680.1| - 1.9e-06 27.3 0.1 4.1e-06 26.3 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55378830|ref|YP_136680.1| - 1.5e-05 24.3 0.6 1.5e-05 24.3 0.6 1.7 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|55378830|ref|YP_136680.1| - 0.00034 20.8 1.2 0.00056 20.1 0.1 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|55378830|ref|YP_136680.1| - 0.0009 18.6 0.3 0.0028 16.9 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55378830|ref|YP_136680.1| - 0.0017 17.5 0.1 0.0024 17.0 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|55378830|ref|YP_136680.1| - 0.0037 16.5 0.1 0.0058 15.9 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|55378830|ref|YP_136680.1| - 0.015 14.2 1.7 1.3 7.8 0.2 2.3 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.27 gi|55378830|ref|YP_136680.1| - 0.037 14.6 0.4 0.81 10.3 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|55378830|ref|YP_136680.1| - 0.056 13.3 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|55378830|ref|YP_136680.1| - 0.091 12.0 0.1 0.17 11.2 0.0 1.5 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|55378830|ref|YP_136680.1| - 0.095 13.1 0.1 0.19 12.2 0.1 1.4 1 1 0 1 1 1 0 Putative NAD(P)-binding AI-2E_transport PF01594.16 gi|55378831|ref|YP_136681.1| - 5.9e-31 107.8 22.2 7.2e-31 107.5 22.2 1.0 1 0 0 1 1 1 1 AI-2E family transporter Rhodanese PF00581.20 gi|55378832|ref|YP_136682.1| - 4.3e-35 120.5 0.0 6.9e-18 65.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|55378833|ref|YP_136683.1| - 2.8e-35 121.1 0.3 7.9e-18 64.9 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Beta-Casp PF10996.8 gi|55378835|ref|YP_136685.1| - 6.6e-13 48.9 0.0 1.2e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|55378835|ref|YP_136685.1| - 3.6e-12 46.0 0.0 1.1e-11 44.5 0.0 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|55378835|ref|YP_136685.1| - 1.3e-07 31.3 1.5 2.6e-07 30.4 1.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|55378835|ref|YP_136685.1| - 2.6e-07 30.9 6.8 2.6e-07 30.9 6.8 2.1 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|55378835|ref|YP_136685.1| - 2.2e-05 24.0 0.0 4.8e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|55378835|ref|YP_136685.1| - 0.0078 16.1 0.0 0.019 14.9 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Rhodanese PF00581.20 gi|55378835|ref|YP_136685.1| - 0.11 13.1 0.0 0.36 11.4 0.0 1.8 2 0 0 2 2 2 0 Rhodanese-like domain RHH_1 PF01402.21 gi|55378836|ref|YP_136686.1| - 0.00053 19.8 1.0 0.0008 19.3 1.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RsbRD_N PF14361.6 gi|55378836|ref|YP_136686.1| - 0.018 15.7 0.8 0.019 15.6 0.8 1.0 1 0 0 1 1 1 0 RsbT co-antagonist protein rsbRD N-terminal domain DUF2238 PF09997.9 gi|55378837|ref|YP_136687.1| - 0.00052 19.8 10.2 0.00085 19.1 2.7 3.1 2 1 0 2 2 2 2 Predicted membrane protein (DUF2238) Cupin_2 PF07883.11 gi|55378838|ref|YP_136688.1| - 4e-20 71.3 1.1 4.7e-20 71.1 1.1 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|55378838|ref|YP_136688.1| - 2e-08 34.2 0.1 2.5e-08 33.9 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|55378838|ref|YP_136688.1| - 9.4e-07 28.8 0.0 1.1e-06 28.6 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|55378838|ref|YP_136688.1| - 4.3e-06 26.3 0.1 7.1e-06 25.6 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.12 gi|55378838|ref|YP_136688.1| - 0.01 16.0 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase Cupin_1 PF00190.22 gi|55378838|ref|YP_136688.1| - 0.13 11.8 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Cupin Lyx_isomer PF07385.12 gi|55378838|ref|YP_136688.1| - 0.18 11.0 0.1 0.52 9.5 0.1 1.7 1 1 1 2 2 2 0 D-lyxose isomerase DUF21 PF01595.20 gi|55378839|ref|YP_136689.1| - 1.2e-26 93.5 0.0 1.6e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|55378839|ref|YP_136689.1| - 5.3e-10 39.6 1.3 1.8e-07 31.5 0.1 2.4 2 0 0 2 2 2 2 CBS domain adh_short PF00106.25 gi|55378840|ref|YP_136690.1| - 1.4e-28 99.7 0.0 1.1e-27 96.8 0.0 2.1 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55378840|ref|YP_136690.1| - 2.4e-16 60.0 0.5 3.9e-16 59.3 0.3 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55378840|ref|YP_136690.1| - 1.6e-06 28.2 0.1 2.4e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55378840|ref|YP_136690.1| - 0.084 12.3 0.0 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF836 PF05768.14 gi|55378841|ref|YP_136691.1| - 6e-15 55.4 0.0 6.8e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|55378841|ref|YP_136691.1| - 2.8e-07 30.6 0.2 5.9e-07 29.6 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|55378841|ref|YP_136691.1| - 3.8e-05 23.6 0.0 4.4e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|55378841|ref|YP_136691.1| - 0.01 15.7 0.0 0.099 12.4 0.0 1.8 1 1 1 2 2 2 0 F plasmid transfer operon protein KaiB PF07689.12 gi|55378841|ref|YP_136691.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 KaiB domain DUF485 PF04341.12 gi|55378842|ref|YP_136692.1| - 0.18 11.8 2.0 1.3 9.0 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function, DUF485 MNHE PF01899.16 gi|55378842|ref|YP_136692.1| - 0.21 11.3 3.7 0.27 11.0 3.7 1.1 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit TMP-TENI PF02581.17 gi|55378843|ref|YP_136693.1| - 4.1e-58 195.7 4.6 4.9e-58 195.4 4.6 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|55378843|ref|YP_136693.1| - 2.6e-07 30.3 8.0 3e-07 30.1 8.0 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|55378843|ref|YP_136693.1| - 4.7e-06 26.1 6.4 4.7e-06 26.1 6.4 1.6 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|55378843|ref|YP_136693.1| - 0.0091 15.2 6.8 0.078 12.2 1.5 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Arm-DNA-bind_1 PF09003.10 gi|55378843|ref|YP_136693.1| - 0.14 12.3 0.1 1 9.5 0.0 2.3 2 1 0 2 2 2 0 Bacteriophage lambda integrase, Arm DNA-binding domain OMPdecase PF00215.24 gi|55378843|ref|YP_136693.1| - 0.14 11.7 5.8 1.8 8.1 2.0 2.1 1 1 1 2 2 2 0 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF561 PF04481.12 gi|55378843|ref|YP_136693.1| - 0.17 11.0 0.4 0.4 9.8 0.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF561) PhoU PF01895.19 gi|55378844|ref|YP_136694.1| - 1.1e-12 48.2 1.8 4.4e-10 39.9 0.0 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|55378844|ref|YP_136694.1| - 7.3e-07 29.0 0.0 1.6e-06 27.9 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Tnp_DNA_bind PF14706.6 gi|55378844|ref|YP_136694.1| - 0.048 13.5 0.1 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 Transposase DNA-binding PhoU PF01895.19 gi|55378845|ref|YP_136695.1| - 9.5e-38 128.5 14.4 1.7e-21 76.5 2.9 2.1 2 0 0 2 2 2 2 PhoU domain Kre28 PF17097.5 gi|55378845|ref|YP_136695.1| - 0.05 12.5 1.1 0.45 9.4 0.2 2.0 2 0 0 2 2 2 0 Spindle pole body component DUF1484 PF07363.11 gi|55378845|ref|YP_136695.1| - 0.051 14.6 2.5 8.7 7.4 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1484) DUF148 PF02520.17 gi|55378845|ref|YP_136695.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF148 Cob_adeno_trans PF01923.18 gi|55378845|ref|YP_136695.1| - 0.1 12.7 3.5 3.5 7.8 0.1 2.2 1 1 0 2 2 2 0 Cobalamin adenosyltransferase ABC_tran PF00005.27 gi|55378846|ref|YP_136696.1| - 2.4e-31 109.1 0.0 4.7e-31 108.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55378846|ref|YP_136696.1| - 3e-10 40.4 0.0 3.4e-05 23.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55378846|ref|YP_136696.1| - 3e-08 33.4 0.2 3.8e-05 23.2 0.1 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|55378846|ref|YP_136696.1| - 1.2e-05 25.3 0.0 8e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|55378846|ref|YP_136696.1| - 0.00022 21.7 0.1 0.00062 20.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55378846|ref|YP_136696.1| - 0.00037 20.8 0.0 0.0012 19.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|55378846|ref|YP_136696.1| - 0.0014 18.6 0.0 0.0032 17.4 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|55378846|ref|YP_136696.1| - 0.0015 18.3 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|55378846|ref|YP_136696.1| - 0.0081 16.1 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|55378846|ref|YP_136696.1| - 0.0088 16.6 0.0 0.027 15.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|55378846|ref|YP_136696.1| - 0.013 15.1 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DeoRC PF00455.22 gi|55378846|ref|YP_136696.1| - 0.016 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|55378846|ref|YP_136696.1| - 0.025 14.3 0.1 0.98 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|55378846|ref|YP_136696.1| - 0.05 13.8 0.0 0.087 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NYN_YacP PF05991.11 gi|55378846|ref|YP_136696.1| - 0.11 12.5 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 YacP-like NYN domain PRK PF00485.18 gi|55378846|ref|YP_136696.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family BPD_transp_1 PF00528.22 gi|55378847|ref|YP_136697.1| - 3.8e-16 59.4 20.2 3.8e-16 59.4 20.2 7.2 2 2 3 6 6 6 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55378848|ref|YP_136698.1| - 2.2e-19 69.9 10.5 2.2e-19 69.9 10.5 3.0 2 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|55378849|ref|YP_136699.1| - 1.3e-16 61.1 5.5 1.6e-16 60.8 3.1 2.1 1 1 1 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|55378849|ref|YP_136699.1| - 3.2e-10 39.4 0.0 7.6e-10 38.2 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|55378849|ref|YP_136699.1| - 0.25 11.3 1.2 0.48 10.4 1.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.19 gi|55378850|ref|YP_136700.1| - 1.1e-21 77.1 3.9 5.1e-18 65.3 0.6 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|55378850|ref|YP_136700.1| - 3.5e-09 36.4 0.0 6.9e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF948 PF06103.11 gi|55378850|ref|YP_136700.1| - 0.016 15.4 3.2 4.6 7.6 0.4 3.2 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Bep_C_terminal PF17841.1 gi|55378850|ref|YP_136700.1| - 0.026 14.7 0.0 0.06 13.6 0.0 1.7 1 0 0 1 1 1 0 BID domain of Bartonella effector protein (Bep) FAM184 PF15665.5 gi|55378850|ref|YP_136700.1| - 0.12 12.2 0.3 0.24 11.2 0.3 1.4 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B Rhodanese PF00581.20 gi|55378852|ref|YP_136702.1| - 5.4e-12 46.2 0.0 7.1e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.28 gi|55378853|ref|YP_136703.1| - 7.2e-13 48.7 0.4 1e-12 48.2 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain DUF3290 PF11694.8 gi|55378854|ref|YP_136704.1| - 0.3 11.1 0.4 4.3 7.3 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3290) Thioredoxin_5 PF13743.6 gi|55378855|ref|YP_136705.1| - 0.29 10.8 0.6 0.4 10.3 0.1 1.4 2 0 0 2 2 2 0 Thioredoxin zf-C2H2_9 PF16293.5 gi|55378856|ref|YP_136706.1| - 0.00042 20.1 0.0 0.00089 19.1 0.0 1.4 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) Acetyltransf_1 PF00583.25 gi|55378857|ref|YP_136707.1| - 3.2e-18 66.1 0.0 4.1e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55378857|ref|YP_136707.1| - 1.6e-12 47.4 0.0 2e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55378857|ref|YP_136707.1| - 1.4e-11 44.6 0.0 2.1e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55378857|ref|YP_136707.1| - 3.2e-08 33.7 0.0 4.9e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55378857|ref|YP_136707.1| - 7.5e-07 29.0 0.0 1.4e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|55378857|ref|YP_136707.1| - 5.3e-05 23.9 0.0 6.4e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|55378857|ref|YP_136707.1| - 0.00049 19.8 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55378857|ref|YP_136707.1| - 0.0011 19.0 0.0 0.0018 18.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|55378857|ref|YP_136707.1| - 0.015 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|55378857|ref|YP_136707.1| - 0.15 12.0 0.0 0.37 10.8 0.0 1.6 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_15 PF17013.5 gi|55378857|ref|YP_136707.1| - 0.26 10.7 0.0 0.35 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase Aconitase PF00330.20 gi|55378859|ref|YP_136708.1| - 5.7e-106 355.3 0.4 4.2e-104 349.1 0.4 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|55378859|ref|YP_136708.1| - 1.6e-20 73.8 0.0 3.1e-20 72.8 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|55378859|ref|YP_136708.1| - 0.012 14.3 0.0 0.019 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Barwin PF00967.17 gi|55378859|ref|YP_136708.1| - 0.08 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Barwin family dUTPase PF00692.19 gi|55378858|ref|YP_136709.1| - 8.6e-10 38.4 0.0 1.4e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 dUTPase HTH_10 PF04967.12 gi|55378860|ref|YP_136710.1| - 8.3e-16 57.5 0.0 1.4e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55378860|ref|YP_136710.1| - 0.00015 21.7 0.5 0.00025 20.9 0.5 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|55378860|ref|YP_136710.1| - 0.00078 19.3 0.2 0.0046 16.8 0.1 2.1 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|55378860|ref|YP_136710.1| - 0.0068 15.9 0.1 0.017 14.7 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|55378860|ref|YP_136710.1| - 0.011 15.3 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55378860|ref|YP_136710.1| - 0.012 15.4 1.3 0.016 15.0 0.2 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HalOD1 PF18545.1 gi|55378861|ref|YP_136711.1| - 7.4e-11 42.2 3.9 8.9e-11 41.9 3.9 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MGS PF02142.22 gi|55378862|ref|YP_136712.1| - 3.7e-15 55.9 0.0 4.4e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain QueC PF06508.13 gi|55378863|ref|YP_136713.1| - 4.1e-68 229.0 0.0 4.7e-68 228.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|55378863|ref|YP_136713.1| - 0.00063 19.4 0.0 0.0017 17.9 0.0 1.7 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|55378863|ref|YP_136713.1| - 0.0026 16.6 0.0 0.0035 16.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|55378863|ref|YP_136713.1| - 0.096 11.8 0.0 0.15 11.1 0.0 1.4 1 1 0 1 1 1 0 NAD synthase Radical_SAM PF04055.21 gi|55378864|ref|YP_136714.1| - 1.2e-23 84.3 3.1 2e-23 83.6 3.1 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|55378864|ref|YP_136714.1| - 3.5e-13 49.7 0.0 7.7e-13 48.6 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|55378864|ref|YP_136714.1| - 1.9e-08 34.7 0.0 6e-08 33.1 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|55378864|ref|YP_136714.1| - 0.023 14.6 0.4 0.097 12.6 0.4 1.9 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases PTPS PF01242.19 gi|55378865|ref|YP_136715.1| - 1.3e-23 83.3 0.0 1.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase baeRF_family10 PF18854.1 gi|55378865|ref|YP_136715.1| - 0.014 15.6 0.2 0.045 14.0 0.1 1.7 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Response_reg PF00072.24 gi|55378867|ref|YP_136717.1| - 6.3e-16 58.5 0.1 7.5e-16 58.3 0.1 1.1 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|55378867|ref|YP_136717.1| - 0.00023 21.4 0.0 0.00032 21.0 0.0 1.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain DUF3088 PF11287.8 gi|55378867|ref|YP_136717.1| - 0.16 11.8 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3088) Peptidase_M28 PF04389.17 gi|55378869|ref|YP_136719.1| - 6.4e-35 120.7 0.3 9e-35 120.2 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|55378869|ref|YP_136719.1| - 5.2e-15 55.2 0.0 1.3e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.14 gi|55378869|ref|YP_136719.1| - 5e-05 22.5 0.3 8.3e-05 21.7 0.3 1.2 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|55378869|ref|YP_136719.1| - 0.0002 21.1 1.7 0.00055 19.7 1.6 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Nicastrin PF05450.15 gi|55378869|ref|YP_136719.1| - 0.083 12.3 0.1 0.16 11.4 0.1 1.4 1 0 0 1 1 1 0 Nicastrin DUF3311 PF11755.8 gi|55378870|ref|YP_136720.1| - 0.093 12.7 2.3 3.1 7.8 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3311) Yip1 PF04893.17 gi|55378870|ref|YP_136720.1| - 0.14 11.8 10.5 0.17 11.6 10.5 1.0 1 0 0 1 1 1 0 Yip1 domain DUF3464 PF11947.8 gi|55378870|ref|YP_136720.1| - 0.59 9.9 4.7 1.6 8.4 3.5 2.0 1 1 1 2 2 2 0 Photosynthesis affected mutant 68 ADH_N PF08240.12 gi|55378871|ref|YP_136721.1| - 8.7e-28 96.4 0.9 8.7e-28 96.4 0.9 2.0 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|55378871|ref|YP_136721.1| - 1.1e-24 86.9 1.1 4.4e-24 84.9 0.0 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|55378871|ref|YP_136721.1| - 0.00038 19.8 3.0 0.00057 19.2 3.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.21 gi|55378871|ref|YP_136721.1| - 0.0011 18.8 0.2 0.0017 18.2 0.2 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 gi|55378871|ref|YP_136721.1| - 0.0012 18.2 0.1 0.0021 17.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|55378871|ref|YP_136721.1| - 0.0042 17.6 1.1 0.17 12.5 0.7 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N_2 PF13602.6 gi|55378871|ref|YP_136721.1| - 0.0047 18.0 0.0 0.0086 17.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 gi|55378871|ref|YP_136721.1| - 0.36 10.7 1.1 0.7 9.8 1.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer2 PF00111.27 gi|55378873|ref|YP_136723.1| - 1.4e-17 63.4 0.1 1.8e-17 63.0 0.1 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|55378873|ref|YP_136723.1| - 0.016 15.2 0.2 0.028 14.5 0.2 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.11 gi|55378874|ref|YP_136724.1| - 7.3e-199 661.3 0.4 8.3e-199 661.1 0.4 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|55378874|ref|YP_136724.1| - 0.0084 15.4 0.0 0.089 12.0 0.0 2.2 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Epimerase PF01370.21 gi|55378875|ref|YP_136725.1| - 3.1e-19 69.4 0.2 7.1e-19 68.2 0.2 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55378875|ref|YP_136725.1| - 2e-16 60.3 0.3 1.1e-11 44.7 0.1 2.4 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|55378875|ref|YP_136725.1| - 7.8e-07 28.4 0.0 1.2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55378875|ref|YP_136725.1| - 2.7e-05 23.4 0.0 4.3e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|55378875|ref|YP_136725.1| - 6.2e-05 23.0 0.1 0.00022 21.2 0.0 1.9 1 1 1 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|55378875|ref|YP_136725.1| - 0.005 16.0 0.0 0.26 10.4 0.0 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein LpxI_N PF17930.1 gi|55378875|ref|YP_136725.1| - 0.0084 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 LpxI N-terminal domain NmrA PF05368.13 gi|55378875|ref|YP_136725.1| - 0.012 15.1 0.1 0.046 13.3 0.0 1.8 2 0 0 2 2 2 0 NmrA-like family KR PF08659.10 gi|55378875|ref|YP_136725.1| - 0.023 14.6 0.1 0.087 12.7 0.0 1.9 2 0 0 2 2 2 0 KR domain NAD_binding_10 PF13460.6 gi|55378876|ref|YP_136726.1| - 2.5e-17 63.4 0.0 4.5e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|55378876|ref|YP_136726.1| - 1.9e-12 47.2 0.0 2.7e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|55378876|ref|YP_136726.1| - 5.1e-12 45.8 0.0 1.7e-11 44.1 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|55378876|ref|YP_136726.1| - 1.2e-05 24.4 0.0 2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55378876|ref|YP_136726.1| - 1.8e-05 24.0 0.0 0.00025 20.2 0.0 2.0 2 0 0 2 2 2 1 RmlD substrate binding domain Glyco_trans_4_4 PF13579.6 gi|55378876|ref|YP_136726.1| - 0.008 16.6 0.4 0.6 10.5 0.0 2.7 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain GDP_Man_Dehyd PF16363.5 gi|55378876|ref|YP_136726.1| - 0.014 14.8 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|55378876|ref|YP_136726.1| - 0.029 13.8 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Semialdhyde_dh PF01118.24 gi|55378876|ref|YP_136726.1| - 0.033 14.6 0.0 0.098 13.1 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain PAC2 PF09754.9 gi|55378876|ref|YP_136726.1| - 0.039 14.0 0.0 0.075 13.0 0.0 1.5 1 1 0 1 1 1 0 PAC2 family DapB_N PF01113.20 gi|55378876|ref|YP_136726.1| - 0.041 14.0 0.0 0.07 13.3 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Glyco_transf_4 PF13439.6 gi|55378876|ref|YP_136726.1| - 0.1 12.6 0.1 0.43 10.6 0.1 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 KR PF08659.10 gi|55378876|ref|YP_136726.1| - 0.14 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 KR domain Fer2 PF00111.27 gi|55378877|ref|YP_136727.1| - 6.1e-13 48.5 0.5 1.2e-12 47.6 0.5 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|55378877|ref|YP_136727.1| - 0.04 14.0 0.0 0.081 13.0 0.0 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain NAD_binding_2 PF03446.15 gi|55378878|ref|YP_136728.1| - 9.9e-38 129.8 0.0 1.4e-37 129.3 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|55378878|ref|YP_136728.1| - 1.9e-24 86.6 0.0 2.6e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain TrkA_N PF02254.18 gi|55378878|ref|YP_136728.1| - 8.9e-06 26.0 0.1 2e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|55378878|ref|YP_136728.1| - 1.3e-05 25.7 0.1 2.2e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|55378878|ref|YP_136728.1| - 2.7e-05 24.1 0.1 3.8e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|55378878|ref|YP_136728.1| - 0.0011 18.4 0.1 0.0016 17.8 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|55378878|ref|YP_136728.1| - 0.0014 18.3 0.0 0.0052 16.4 0.1 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|55378878|ref|YP_136728.1| - 0.01 16.1 0.7 0.12 12.6 0.7 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_11 PF14833.6 gi|55378878|ref|YP_136728.1| - 0.012 15.9 0.0 0.076 13.3 0.0 2.1 1 1 1 2 2 2 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DapB_N PF01113.20 gi|55378878|ref|YP_136728.1| - 0.023 14.8 1.2 0.055 13.6 1.2 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|55378878|ref|YP_136728.1| - 0.029 14.7 0.0 0.051 13.9 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|55378878|ref|YP_136728.1| - 0.051 13.5 0.1 1.4 8.7 0.1 2.3 2 0 0 2 2 2 0 NAD(P)H-binding ApbA PF02558.16 gi|55378878|ref|YP_136728.1| - 0.22 11.2 0.0 1.1 8.9 0.1 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Peptidase_M29 PF02073.15 gi|55378879|ref|YP_136729.1| - 1.5e-61 208.4 0.0 1.9e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Peptidase_S24 PF00717.23 gi|55378879|ref|YP_136729.1| - 0.021 14.8 0.2 0.097 12.6 0.0 2.1 2 0 0 2 2 2 0 Peptidase S24-like T2SSF PF00482.23 gi|55378880|ref|YP_136730.1| - 1.6e-16 60.4 1.9 1.1e-10 41.5 0.3 4.0 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.6 gi|55378880|ref|YP_136730.1| - 0.012 14.5 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|55378881|ref|YP_136731.1| - 5.7e-42 143.6 0.0 1.3e-41 142.5 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|55378881|ref|YP_136731.1| - 0.0015 18.9 0.0 0.026 14.9 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|55378881|ref|YP_136731.1| - 0.003 18.1 0.0 0.016 15.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.6 gi|55378881|ref|YP_136731.1| - 0.01 16.1 0.0 0.04 14.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|55378881|ref|YP_136731.1| - 0.018 14.8 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_7 PF12775.7 gi|55378881|ref|YP_136731.1| - 0.031 13.8 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|55378881|ref|YP_136731.1| - 0.044 14.3 0.1 0.16 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sigma70_r1_1 PF03979.14 gi|55378881|ref|YP_136731.1| - 0.05 13.7 0.7 0.57 10.3 0.0 2.7 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 AAA_29 PF13555.6 gi|55378881|ref|YP_136731.1| - 0.054 13.2 0.1 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|55378881|ref|YP_136731.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|55378882|ref|YP_136732.1| - 3.5e-17 62.5 0.1 6.9e-17 61.6 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|55378882|ref|YP_136732.1| - 4.8e-08 32.8 0.0 6.9e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|55378882|ref|YP_136732.1| - 6.8e-05 23.2 0.0 0.0001 22.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|55378882|ref|YP_136732.1| - 0.0013 18.7 0.0 0.01 15.8 0.0 2.0 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|55378882|ref|YP_136732.1| - 0.0046 17.3 0.0 0.0068 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.11 gi|55378882|ref|YP_136732.1| - 0.024 13.9 0.1 0.046 13.0 0.1 1.6 1 1 0 1 1 1 0 Rad51 TsaE PF02367.17 gi|55378882|ref|YP_136732.1| - 0.032 14.2 0.0 0.078 13.0 0.0 1.7 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|55378882|ref|YP_136732.1| - 0.034 13.9 0.0 0.068 12.9 0.0 1.4 1 1 0 1 1 1 0 IstB-like ATP binding protein PAXNEB PF05625.11 gi|55378882|ref|YP_136732.1| - 0.084 12.0 0.1 1.6 7.8 0.1 2.0 2 0 0 2 2 2 0 PAXNEB protein FF PF01846.19 gi|55378882|ref|YP_136732.1| - 0.1 12.8 0.1 0.41 10.9 0.0 1.9 2 0 0 2 2 2 0 FF domain APS_kinase PF01583.20 gi|55378882|ref|YP_136732.1| - 0.14 12.1 0.1 1.5 8.7 0.0 2.4 1 1 0 2 2 2 0 Adenylylsulphate kinase DUF3843 PF12954.7 gi|55378882|ref|YP_136732.1| - 0.2 10.6 0.0 0.41 9.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3843) Arch_flagellin PF01917.16 gi|55378883|ref|YP_136733.1| - 9.3e-21 74.7 2.7 1.1e-20 74.5 2.7 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|55378883|ref|YP_136733.1| - 1.1e-07 32.0 0.8 1.4e-07 31.7 0.8 1.3 1 0 0 1 1 1 1 CARDB RskA PF10099.9 gi|55378883|ref|YP_136733.1| - 0.11 12.8 0.1 7.9 6.7 0.0 2.0 1 1 0 2 2 2 0 Anti-sigma-K factor rskA Hormone_2 PF00123.20 gi|55378883|ref|YP_136733.1| - 0.37 10.7 1.2 1.1 9.2 0.1 2.1 2 0 0 2 2 2 0 Peptide hormone Arch_flagellin PF01917.16 gi|55378884|ref|YP_136734.1| - 1.5e-12 48.0 3.4 1.7e-12 47.8 3.4 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|55378885|ref|YP_136735.1| - 3.3e-28 97.4 0.0 6.6e-28 96.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|55378885|ref|YP_136735.1| - 1.1e-21 76.9 1.9 2.5e-21 75.8 1.9 1.6 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Trypan_PARP PF05887.11 gi|55378885|ref|YP_136735.1| - 4.5e-06 26.7 44.6 4.5e-06 26.7 44.6 3.1 2 2 0 3 3 2 1 Procyclic acidic repetitive protein (PARP) Dynamitin PF04912.14 gi|55378885|ref|YP_136735.1| - 0.0057 16.0 0.3 0.011 15.1 0.3 1.4 1 0 0 1 1 1 1 Dynamitin CENP-F_leu_zip PF10473.9 gi|55378885|ref|YP_136735.1| - 0.073 13.1 0.6 0.13 12.3 0.6 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EzrA PF06160.12 gi|55378885|ref|YP_136735.1| - 0.093 10.9 0.1 0.14 10.3 0.1 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Sec34 PF04136.15 gi|55378885|ref|YP_136735.1| - 0.1 12.5 0.0 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Sec34-like family ZapB PF06005.12 gi|55378885|ref|YP_136735.1| - 0.14 12.7 1.4 0.26 11.7 1.4 1.3 1 0 0 1 1 1 0 Cell division protein ZapB bZIP_1 PF00170.21 gi|55378885|ref|YP_136735.1| - 0.42 10.8 2.0 1.2 9.3 0.4 1.9 1 1 1 2 2 2 0 bZIP transcription factor JIP_LZII PF16471.5 gi|55378885|ref|YP_136735.1| - 0.42 10.8 3.6 0.69 10.1 3.6 1.3 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II DUF3391 PF11871.8 gi|55378885|ref|YP_136735.1| - 0.88 10.1 2.5 1.1 9.8 0.8 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) CheD PF03975.13 gi|55378886|ref|YP_136736.1| - 3.7e-29 101.0 0.1 5e-29 100.6 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|55378887|ref|YP_136737.1| - 3.3e-22 78.1 0.0 1.8e-10 40.5 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|55378887|ref|YP_136737.1| - 3.7e-19 68.7 0.5 5.5e-10 39.3 0.1 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX DUF3334 PF11813.8 gi|55378887|ref|YP_136737.1| - 0.1 12.3 2.8 0.19 11.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3334) Response_reg PF00072.24 gi|55378888|ref|YP_136738.1| - 1.2e-31 109.1 0.6 1.4e-31 109.0 0.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain QRPTase_C PF01729.19 gi|55378888|ref|YP_136738.1| - 0.054 13.3 2.1 0.25 11.1 1.6 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain IMPDH PF00478.25 gi|55378888|ref|YP_136738.1| - 0.064 12.2 0.3 0.083 11.9 0.3 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Trypan_PARP PF05887.11 gi|55378889|ref|YP_136739.1| - 2.6 8.1 6.7 0.57 10.2 2.9 1.8 1 1 1 2 2 2 0 Procyclic acidic repetitive protein (PARP) Arch_flagellin PF01917.16 gi|55378891|ref|YP_136741.1| - 1.7e-27 96.6 55.7 3.4e-19 69.6 26.6 3.7 1 1 2 3 3 3 2 Archaebacterial flagellin Motile_Sperm PF00635.26 gi|55378891|ref|YP_136741.1| - 0.18 11.6 0.3 4.1 7.3 0.0 2.8 3 0 0 3 3 3 0 MSP (Major sperm protein) domain DUF202 PF02656.15 gi|55378892|ref|YP_136742.1| - 5.2 7.6 9.5 2.8 8.5 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) HTH_20 PF12840.7 gi|55378893|ref|YP_136743.1| - 9.3e-11 41.6 0.0 1.9e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|55378893|ref|YP_136743.1| - 8.9e-06 25.2 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|55378893|ref|YP_136743.1| - 3.1e-05 23.7 0.0 5.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|55378893|ref|YP_136743.1| - 8e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|55378893|ref|YP_136743.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55378893|ref|YP_136743.1| - 0.0027 17.7 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55378893|ref|YP_136743.1| - 0.0067 16.2 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|55378893|ref|YP_136743.1| - 0.0068 16.3 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|55378893|ref|YP_136743.1| - 0.018 15.1 0.1 0.037 14.1 0.0 1.5 2 0 0 2 2 2 0 HemN C-terminal domain DUF99 PF01949.16 gi|55378893|ref|YP_136743.1| - 0.099 12.0 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF99 RDV-p3 PF09231.10 gi|55378893|ref|YP_136743.1| - 0.099 10.3 0.1 0.1 10.3 0.1 1.0 1 0 0 1 1 1 0 Rice dwarf virus p3 ATPase PF06745.13 gi|55378894|ref|YP_136744.1| - 3.6e-49 167.2 0.0 4.2e-49 167.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|55378894|ref|YP_136744.1| - 4.3e-08 33.0 0.0 6.1e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|55378894|ref|YP_136744.1| - 0.00017 21.0 0.0 0.00021 20.6 0.0 1.4 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|55378894|ref|YP_136744.1| - 0.0011 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|55378894|ref|YP_136744.1| - 0.018 14.3 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|55378894|ref|YP_136744.1| - 0.026 14.2 0.1 0.066 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|55378894|ref|YP_136744.1| - 0.032 14.3 0.1 0.07 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|55378894|ref|YP_136744.1| - 0.11 12.7 0.0 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|55378894|ref|YP_136744.1| - 0.14 12.5 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain CheW PF01584.19 gi|55378895|ref|YP_136745.1| - 3.9e-27 94.6 0.4 4.5e-27 94.4 0.4 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 gi|55378896|ref|YP_136746.1| - 5.9e-55 185.6 0.4 1.2e-54 184.6 0.1 1.6 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|55378896|ref|YP_136746.1| - 3.1e-25 88.5 0.9 1.8e-24 86.1 0.3 2.3 2 0 0 2 2 2 1 Response regulator receiver domain Hpt PF01627.23 gi|55378897|ref|YP_136747.1| - 3.2e-19 69.0 3.0 5.5e-19 68.2 1.4 2.3 2 1 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 gi|55378897|ref|YP_136747.1| - 3.5e-19 69.4 0.1 8.5e-19 68.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|55378897|ref|YP_136747.1| - 3.9e-19 68.6 1.4 6e-19 68.1 0.5 1.8 2 0 0 2 2 2 1 CheW-like domain P2 PF07194.11 gi|55378897|ref|YP_136747.1| - 1.7e-08 34.4 0.0 1.7e-08 34.4 0.0 2.3 3 0 0 3 3 3 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|55378897|ref|YP_136747.1| - 0.0002 21.6 4.4 0.00026 21.3 2.6 2.2 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_5 PF14501.6 gi|55378897|ref|YP_136747.1| - 0.023 14.6 0.1 0.14 12.1 0.0 2.3 2 1 0 2 2 2 0 GHKL domain HATPase_c_3 PF13589.6 gi|55378897|ref|YP_136747.1| - 0.059 13.2 0.1 0.13 12.0 0.1 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheR PF01739.18 gi|55378898|ref|YP_136748.1| - 3.9e-48 163.5 0.0 4.9e-48 163.2 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|55378898|ref|YP_136748.1| - 2.1e-07 30.6 1.8 2.1e-07 30.6 1.8 2.3 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|55378898|ref|YP_136748.1| - 2.9e-05 24.7 0.0 0.0019 18.9 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378898|ref|YP_136748.1| - 0.00032 21.4 0.0 0.043 14.5 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378898|ref|YP_136748.1| - 0.00033 20.5 0.1 0.0016 18.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain APAF1_C PF17908.1 gi|55378898|ref|YP_136748.1| - 0.014 15.4 0.0 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 APAF-1 helical domain Methyltransf_23 PF13489.6 gi|55378898|ref|YP_136748.1| - 0.026 14.4 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|55378898|ref|YP_136748.1| - 0.039 14.6 0.1 0.39 11.4 0.0 2.3 1 1 1 2 2 2 0 Methyltransferase domain HEAT_2 PF13646.6 gi|55378899|ref|YP_136749.1| - 7.1e-60 199.4 36.4 2.7e-18 66.1 0.4 5.8 1 1 5 6 6 6 6 HEAT repeats HEAT PF02985.22 gi|55378899|ref|YP_136749.1| - 2.5e-28 95.7 3.0 0.0027 17.8 0.1 11.2 10 1 1 11 11 11 6 HEAT repeat HEAT_PBS PF03130.16 gi|55378899|ref|YP_136749.1| - 8.9e-23 78.6 12.0 9.6e-05 22.7 0.4 10.2 10 0 0 10 10 10 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|55378899|ref|YP_136749.1| - 1.5e-20 73.3 18.9 4.2e-05 24.0 0.1 9.2 8 3 1 9 9 9 6 HEAT-like repeat Arm PF00514.23 gi|55378899|ref|YP_136749.1| - 2.2e-14 52.9 0.6 0.023 14.7 0.0 8.4 9 0 0 9 9 9 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|55378899|ref|YP_136749.1| - 6.4e-13 49.1 4.8 0.0049 16.9 0.1 6.0 2 1 4 6 6 6 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|55378899|ref|YP_136749.1| - 5.5e-10 38.4 0.4 0.00077 18.1 0.2 4.7 2 1 3 5 5 5 2 Adaptin N terminal region ERAP1_C PF11838.8 gi|55378899|ref|YP_136749.1| - 5.9e-07 29.3 3.8 0.0027 17.3 0.0 3.3 1 1 1 2 2 2 2 ERAP1-like C-terminal domain ThylakoidFormat PF11264.8 gi|55378899|ref|YP_136749.1| - 0.00075 19.3 0.0 0.51 10.0 0.0 2.7 3 0 0 3 3 3 2 Thylakoid formation protein Vac14_Fab1_bd PF12755.7 gi|55378899|ref|YP_136749.1| - 0.00082 19.9 0.5 5.8 7.6 0.0 4.9 4 1 0 5 5 5 1 Vacuolar 14 Fab1-binding region API5 PF05918.11 gi|55378899|ref|YP_136749.1| - 0.0011 17.8 6.2 0.13 11.0 1.1 3.0 3 1 1 4 4 4 2 Apoptosis inhibitory protein 5 (API5) Vitellogenin_N PF01347.22 gi|55378899|ref|YP_136749.1| - 0.0027 16.2 0.0 0.33 9.3 0.0 2.9 2 1 1 3 3 3 1 Lipoprotein amino terminal region RTP1_C1 PF10363.9 gi|55378899|ref|YP_136749.1| - 0.012 15.7 0.7 1.4 9.1 0.2 4.0 3 2 0 3 3 3 0 Required for nuclear transport of RNA pol II C-terminus 1 CLASP_N PF12348.8 gi|55378899|ref|YP_136749.1| - 0.063 12.8 0.5 9.7 5.7 0.0 3.4 3 1 0 4 4 4 0 CLASP N terminal GlutR_dimer PF00745.20 gi|55378899|ref|YP_136749.1| - 0.091 13.2 4.0 6.6 7.3 0.4 3.9 3 1 1 4 4 4 0 Glutamyl-tRNAGlu reductase, dimerisation domain Cohesin_HEAT PF12765.7 gi|55378899|ref|YP_136749.1| - 0.68 10.3 8.9 16 5.9 0.9 4.2 3 1 1 4 4 4 0 HEAT repeat associated with sister chromatid cohesion CheF-arch PF04283.12 gi|55378900|ref|YP_136750.1| - 2e-69 233.7 0.5 2.7e-69 233.3 0.5 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_2 PF03703.14 gi|55378900|ref|YP_136750.1| - 0.02 15.1 0.1 0.19 11.9 0.0 2.5 3 0 0 3 3 3 0 Bacterial PH domain Response_reg PF00072.24 gi|55378901|ref|YP_136751.1| - 2.4e-21 76.0 0.0 4.3e-21 75.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|55378901|ref|YP_136751.1| - 2e-12 47.9 0.0 3.3e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|55378901|ref|YP_136751.1| - 2.1e-11 44.0 0.0 1.6e-10 41.2 0.0 2.5 3 0 0 3 3 3 1 PAS fold GAF_2 PF13185.6 gi|55378901|ref|YP_136751.1| - 3.8e-11 43.4 0.2 3.8e-10 40.2 0.1 2.3 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|55378901|ref|YP_136751.1| - 5.7e-09 36.4 0.0 1.2e-08 35.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|55378901|ref|YP_136751.1| - 0.01 16.1 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.25 gi|55378901|ref|YP_136751.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 PAS fold Ribosomal_S6e PF01092.19 gi|55378902|ref|YP_136752.1| - 3.6e-40 136.8 0.1 4.1e-40 136.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e CheF-arch PF04283.12 gi|55378903|ref|YP_136753.1| - 2.9e-69 233.1 0.2 6.6e-69 232.0 0.1 1.5 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea TrmB PF01978.19 gi|55378903|ref|YP_136753.1| - 0.0046 16.8 0.0 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3553 PF12073.8 gi|55378903|ref|YP_136753.1| - 0.042 13.6 0.1 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) MarR_2 PF12802.7 gi|55378903|ref|YP_136753.1| - 0.086 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family DHH PF01368.20 gi|55378907|ref|YP_136757.1| - 0.0026 18.0 0.1 0.0054 16.9 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|55378907|ref|YP_136757.1| - 0.014 15.8 0.0 0.031 14.7 0.0 1.6 1 0 0 1 1 1 0 DHHA1 domain DUF3364 PF11844.8 gi|55378907|ref|YP_136757.1| - 0.071 13.4 1.0 0.64 10.3 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3364) DUF2795 PF11387.8 gi|55378907|ref|YP_136757.1| - 0.22 11.8 4.7 3.3 8.0 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2795) HATPase_c PF02518.26 gi|55378908|ref|YP_136758.1| - 5.9e-19 68.6 0.0 1.2e-18 67.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55378908|ref|YP_136758.1| - 1.9e-14 53.8 0.3 4.3e-14 52.7 0.1 1.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|55378908|ref|YP_136758.1| - 1.9e-10 40.7 2.1 2.8e-10 40.1 0.4 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|55378908|ref|YP_136758.1| - 4.2e-05 23.7 0.0 9.5e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|55378908|ref|YP_136758.1| - 0.00032 20.7 0.9 0.00068 19.6 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain sCache_3_3 PF17202.4 gi|55378908|ref|YP_136758.1| - 0.012 16.1 0.0 0.029 14.8 0.0 1.6 1 0 0 1 1 1 0 Single cache domain 3 PAS_6 PF08348.11 gi|55378908|ref|YP_136758.1| - 0.054 13.4 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 YheO-like PAS domain Cache_3-Cache_2 PF17201.4 gi|55378908|ref|YP_136758.1| - 0.09 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Cache 3/Cache 2 fusion domain Usp PF00582.26 gi|55378910|ref|YP_136759.1| - 8e-35 120.4 2.7 9.1e-35 120.2 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family GGDEF_2 PF17853.1 gi|55378910|ref|YP_136759.1| - 0.034 14.4 0.8 0.051 13.8 0.8 1.5 1 1 0 1 1 1 0 GGDEF-like domain DNA_photolyase PF00875.18 gi|55378910|ref|YP_136759.1| - 0.048 13.7 0.0 0.092 12.8 0.0 1.4 1 1 0 1 1 1 0 DNA photolyase Acetyltransf_6 PF13480.7 gi|55378910|ref|YP_136759.1| - 0.088 13.0 1.4 0.12 12.5 0.9 1.5 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain DUF1778 PF08681.11 gi|55378910|ref|YP_136759.1| - 0.093 12.7 0.3 0.19 11.6 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) PvlArgDC PF01862.16 gi|55378910|ref|YP_136759.1| - 0.12 12.2 0.3 0.2 11.4 0.3 1.3 1 1 0 1 1 1 0 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Usp PF00582.26 gi|55378909|ref|YP_136760.1| - 6.3e-16 59.2 1.9 1.2e-15 58.2 1.9 1.4 1 1 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.25 gi|55378911|ref|YP_136761.1| - 3.1e-19 69.3 0.0 4e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|55378911|ref|YP_136761.1| - 9.6e-14 51.4 0.0 1.3e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55378911|ref|YP_136761.1| - 9e-13 48.5 0.0 1.3e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55378911|ref|YP_136761.1| - 1.5e-08 35.4 0.0 1.9e-08 35.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55378911|ref|YP_136761.1| - 1.4e-06 28.2 0.0 2.5e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|55378911|ref|YP_136761.1| - 0.013 15.6 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55378911|ref|YP_136761.1| - 0.022 14.8 0.0 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|55378911|ref|YP_136761.1| - 0.08 12.5 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|55378911|ref|YP_136761.1| - 0.13 12.4 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Usp PF00582.26 gi|55378912|ref|YP_136762.1| - 9e-14 52.2 0.0 4.2e-12 46.8 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|55378912|ref|YP_136762.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain ABC_tran PF00005.27 gi|55378916|ref|YP_136766.1| - 6e-57 192.0 0.0 6.5e-32 110.9 0.0 3.4 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|55378916|ref|YP_136766.1| - 6.7e-37 125.8 0.6 3.6e-19 69.0 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|55378916|ref|YP_136766.1| - 1.1e-11 45.1 1.5 1.1e-05 25.4 0.0 3.9 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|55378916|ref|YP_136766.1| - 1.6e-06 28.6 0.0 0.018 15.4 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|55378916|ref|YP_136766.1| - 3e-05 23.6 0.2 0.16 11.4 0.0 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55378916|ref|YP_136766.1| - 3.4e-05 24.1 1.1 0.032 14.5 0.0 3.3 3 1 0 3 3 3 2 AAA domain AAA_29 PF13555.6 gi|55378916|ref|YP_136766.1| - 0.00019 21.1 1.1 0.64 9.8 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AIG1 PF04548.16 gi|55378916|ref|YP_136766.1| - 0.00042 19.7 1.4 0.36 10.1 0.1 3.2 3 0 0 3 3 3 1 AIG1 family AAA_7 PF12775.7 gi|55378916|ref|YP_136766.1| - 0.0016 18.0 0.3 0.53 9.8 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|55378916|ref|YP_136766.1| - 0.003 17.1 1.0 5.3 6.6 0.0 4.3 5 0 0 5 5 5 1 AAA domain ATP-synt_ab PF00006.25 gi|55378916|ref|YP_136766.1| - 0.0057 16.3 0.0 0.41 10.3 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.29 gi|55378916|ref|YP_136766.1| - 0.0064 16.9 0.1 0.32 11.4 0.0 3.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|55378916|ref|YP_136766.1| - 0.0089 16.0 0.3 0.54 10.3 0.0 2.8 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|55378916|ref|YP_136766.1| - 0.029 14.3 0.4 4 7.3 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase PRK PF00485.18 gi|55378916|ref|YP_136766.1| - 0.046 13.5 0.3 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.26 gi|55378916|ref|YP_136766.1| - 0.066 12.9 0.3 17 5.1 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|55378916|ref|YP_136766.1| - 0.16 11.7 0.1 21 4.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|55378916|ref|YP_136766.1| - 0.17 12.3 0.2 7.8 6.9 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Hpr_kinase_C PF07475.12 gi|55378916|ref|YP_136766.1| - 0.2 11.2 2.1 2.8 7.4 0.1 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain ATPase PF06745.13 gi|55378916|ref|YP_136766.1| - 0.22 10.9 0.5 16 4.7 0.0 2.4 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|55378916|ref|YP_136766.1| - 0.38 9.9 0.9 15 4.6 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain DUF87 PF01935.17 gi|55378916|ref|YP_136766.1| - 0.44 10.6 1.3 12 5.9 0.1 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain SBP_bac_5 PF00496.22 gi|55378917|ref|YP_136767.1| - 6e-77 259.1 3.4 8e-77 258.7 3.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|55378917|ref|YP_136767.1| - 4.8e-06 26.2 5.0 9e-06 25.3 5.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|55378917|ref|YP_136767.1| - 0.11 11.9 0.5 0.19 11.1 0.5 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal B1 PF02246.15 gi|55378917|ref|YP_136767.1| - 0.13 12.3 0.3 5.6 7.1 0.1 2.7 2 0 0 2 2 2 0 Protein L b1 domain BPD_transp_1 PF00528.22 gi|55378918|ref|YP_136768.1| - 1.6e-38 132.3 12.8 1.6e-38 132.3 12.8 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55378919|ref|YP_136769.1| - 2.8e-34 118.5 7.7 2.8e-34 118.5 7.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|55378919|ref|YP_136769.1| - 5.2e-05 23.1 0.1 5.2e-05 23.1 0.1 3.0 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C CbtB PF09489.10 gi|55378920|ref|YP_136770.1| - 1.7 8.8 3.6 1.4 9.1 0.2 2.3 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Amidohydro_1 PF01979.20 gi|55378921|ref|YP_136771.1| - 1.2e-24 87.3 0.0 2.8e-24 86.1 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|55378921|ref|YP_136771.1| - 2.7e-15 56.8 7.2 5.6e-06 26.1 0.1 3.3 2 1 0 3 3 3 3 Amidohydrolase family Usp PF00582.26 gi|55378921|ref|YP_136771.1| - 0.0024 18.4 3.6 0.0025 18.3 0.2 2.5 3 0 0 3 3 3 1 Universal stress protein family TatD_DNase PF01026.21 gi|55378921|ref|YP_136771.1| - 0.006 16.0 0.4 0.49 9.7 0.0 3.0 1 1 1 2 2 2 1 TatD related DNase BPL_LplA_LipB PF03099.19 gi|55378922|ref|YP_136772.1| - 0.0033 17.3 0.0 0.0058 16.5 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.22 gi|55378923|ref|YP_136773.1| - 0.0027 17.9 0.0 0.0077 16.4 0.0 1.7 1 0 0 1 1 1 1 Peptidase family M23 Isochorismatase PF00857.20 gi|55378924|ref|YP_136774.1| - 4.1e-51 173.6 0.0 4.7e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M78 PF06114.13 gi|55378925|ref|YP_136775.1| - 0.021 14.7 0.0 0.039 13.9 0.0 1.3 1 0 0 1 1 1 0 IrrE N-terminal-like domain Peptidase_M78 PF06114.13 gi|55378926|ref|YP_136776.1| - 0.0068 16.3 0.0 0.028 14.4 0.0 1.9 2 0 0 2 2 2 1 IrrE N-terminal-like domain HalOD1 PF18545.1 gi|55378927|ref|YP_136777.1| - 3.1e-20 72.2 0.6 3.6e-20 72.0 0.6 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 QRPTase_C PF01729.19 gi|55378928|ref|YP_136778.1| - 2e-16 60.2 0.0 2.8e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|55378928|ref|YP_136778.1| - 0.0007 19.6 0.0 0.0022 18.0 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Glycos_transf_3 PF00591.21 gi|55378929|ref|YP_136779.1| - 0.062 12.9 0.3 0.064 12.8 0.3 1.0 1 0 0 1 1 1 0 Glycosyl transferase family, a/b domain Cys_rich_CPCC PF14206.6 gi|55378930|ref|YP_136780.1| - 1e-27 95.8 1.2 1.2e-27 95.6 1.2 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC Zip PF02535.22 gi|55378931|ref|YP_136781.1| - 6.4e-17 61.8 13.4 6.5e-12 45.3 7.1 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter GtrA PF04138.14 gi|55378931|ref|YP_136781.1| - 0.2 11.9 0.1 0.2 11.9 0.1 2.4 3 1 0 3 3 3 0 GtrA-like protein YhhN PF07947.14 gi|55378931|ref|YP_136781.1| - 1.1 8.9 8.0 0.21 11.2 0.5 2.8 1 1 0 3 3 3 0 YhhN family Peptidase_M50 PF02163.22 gi|55378932|ref|YP_136782.1| - 4.2e-10 39.3 2.4 8.8e-09 35.0 0.4 2.3 1 1 1 2 2 2 2 Peptidase family M50 CBS PF00571.28 gi|55378932|ref|YP_136782.1| - 0.0027 18.1 1.1 0.0091 16.4 0.3 2.1 2 0 0 2 2 2 1 CBS domain Lactamase_B_3 PF13483.6 gi|55378933|ref|YP_136783.1| - 2.8e-25 89.1 0.0 3.6e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|55378933|ref|YP_136783.1| - 0.011 15.3 0.1 0.017 14.7 0.1 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain IF-2B PF01008.17 gi|55378934|ref|YP_136784.1| - 2.2e-54 184.6 1.4 2.8e-54 184.2 1.4 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|55378934|ref|YP_136784.1| - 3.5e-11 43.3 1.2 8.2e-11 42.1 1.2 1.6 1 0 0 1 1 1 1 NUDIX domain Aminotran_5 PF00266.19 gi|55378935|ref|YP_136785.1| - 5.3e-56 190.2 0.0 7.9e-56 189.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|55378935|ref|YP_136785.1| - 0.026 13.1 0.0 0.038 12.5 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Relaxase PF03432.14 gi|55378936|ref|YP_136786.1| - 0.075 12.6 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain SCAB-ABD PF16711.5 gi|55378936|ref|YP_136786.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein Jas PF16135.5 gi|55378936|ref|YP_136786.1| - 0.13 12.5 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 TPL-binding domain in jasmonate signalling SHE3 PF17078.5 gi|55378937|ref|YP_136787.1| - 1.3e-06 28.3 48.8 1e-05 25.4 22.6 2.4 2 0 0 2 2 2 2 SWI5-dependent HO expression protein 3 Spc7 PF08317.11 gi|55378937|ref|YP_136787.1| - 2.8e-06 26.5 69.6 0.0016 17.4 12.5 4.8 2 2 2 4 4 4 4 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|55378937|ref|YP_136787.1| - 0.00045 20.4 60.2 0.00048 20.3 5.3 5.3 2 2 2 4 4 4 2 Seryl-tRNA synthetase N-terminal domain DUF4407 PF14362.6 gi|55378937|ref|YP_136787.1| - 0.00073 19.0 44.6 0.0077 15.6 6.4 3.4 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) FliJ PF02050.16 gi|55378937|ref|YP_136787.1| - 0.003 17.8 2.4 0.003 17.8 2.4 5.6 4 2 2 6 6 5 1 Flagellar FliJ protein Laminin_II PF06009.12 gi|55378937|ref|YP_136787.1| - 0.0053 16.8 9.1 0.0053 16.8 9.1 5.1 3 2 3 6 6 6 1 Laminin Domain II Baculo_PEP_C PF04513.12 gi|55378937|ref|YP_136787.1| - 0.0062 16.6 22.2 0.33 11.0 2.3 4.8 4 1 1 5 5 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus DivIC PF04977.15 gi|55378937|ref|YP_136787.1| - 0.0069 16.1 0.5 0.0069 16.1 0.5 8.6 4 2 3 8 8 7 3 Septum formation initiator BRE1 PF08647.11 gi|55378937|ref|YP_136787.1| - 0.0078 16.3 11.1 0.0078 16.3 11.1 5.9 5 1 1 6 6 6 1 BRE1 E3 ubiquitin ligase Golgin_A5 PF09787.9 gi|55378937|ref|YP_136787.1| - 0.01 15.4 78.1 0.023 14.1 5.6 4.2 1 1 1 3 3 3 0 Golgin subfamily A member 5 Atg14 PF10186.9 gi|55378937|ref|YP_136787.1| - 0.019 14.1 54.6 0.71 8.9 11.0 4.3 2 2 2 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|55378937|ref|YP_136787.1| - 0.023 12.3 59.9 0.096 10.2 23.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DUF5082 PF16888.5 gi|55378937|ref|YP_136787.1| - 0.023 15.0 54.5 0.11 12.8 12.2 7.2 2 2 3 6 6 6 0 Domain of unknown function (DUF5082) GAS PF13851.6 gi|55378937|ref|YP_136787.1| - 0.031 13.6 61.1 0.078 12.3 23.2 4.4 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding ATG16 PF08614.11 gi|55378937|ref|YP_136787.1| - 0.038 14.2 70.0 0.35 11.1 13.7 4.5 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) HsbA PF12296.8 gi|55378937|ref|YP_136787.1| - 0.07 13.6 0.3 0.49 10.8 0.0 2.5 2 0 0 2 2 2 0 Hydrophobic surface binding protein A HMMR_N PF15905.5 gi|55378937|ref|YP_136787.1| - 0.12 11.9 61.7 0.12 11.9 22.8 2.9 2 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal ERM PF00769.19 gi|55378937|ref|YP_136787.1| - 0.17 11.7 63.7 0.48 10.2 22.1 3.0 1 1 1 2 2 2 0 Ezrin/radixin/moesin family WEMBL PF05701.11 gi|55378937|ref|YP_136787.1| - 0.17 10.5 48.8 0.43 9.2 20.1 2.4 2 0 0 2 2 2 0 Weak chloroplast movement under blue light HemX PF04375.14 gi|55378937|ref|YP_136787.1| - 0.34 10.2 39.5 1.5 8.1 8.1 4.3 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase KASH_CCD PF14662.6 gi|55378937|ref|YP_136787.1| - 0.35 10.7 62.6 0.15 11.9 21.0 3.7 2 2 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH NPV_P10 PF05531.12 gi|55378937|ref|YP_136787.1| - 0.4 11.2 41.7 0.25 11.9 1.1 7.2 2 2 3 5 5 4 0 Nucleopolyhedrovirus P10 protein Lectin_N PF03954.14 gi|55378937|ref|YP_136787.1| - 0.49 10.1 20.2 0.069 12.9 0.6 4.7 2 2 3 5 5 5 0 Hepatic lectin, N-terminal domain Tropomyosin_1 PF12718.7 gi|55378937|ref|YP_136787.1| - 0.68 10.1 89.5 0.11 12.7 24.6 5.0 2 2 2 4 4 4 0 Tropomyosin like Spectrin PF00435.21 gi|55378937|ref|YP_136787.1| - 0.72 10.4 53.6 3.6 8.1 6.1 5.9 3 1 2 5 5 5 0 Spectrin repeat OmpH PF03938.14 gi|55378937|ref|YP_136787.1| - 0.77 10.1 53.1 5 7.4 14.4 4.4 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) Fez1 PF06818.15 gi|55378937|ref|YP_136787.1| - 0.81 10.1 59.4 11 6.4 25.5 3.7 1 1 1 2 2 1 0 Fez1 MAD PF05557.13 gi|55378937|ref|YP_136787.1| - 0.9 7.8 65.1 0.16 10.3 28.6 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF4200 PF13863.6 gi|55378937|ref|YP_136787.1| - 1.1 9.7 64.7 0.65 10.4 15.2 6.2 3 2 3 6 6 6 0 Domain of unknown function (DUF4200) AAA_23 PF13476.6 gi|55378937|ref|YP_136787.1| - 1.3 9.5 66.1 1.2e+03 -0.1 14.0 4.6 1 1 1 2 2 1 0 AAA domain Med9 PF07544.13 gi|55378937|ref|YP_136787.1| - 1.3 9.2 54.8 0.43 10.7 6.1 5.8 2 2 3 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 TPR_MLP1_2 PF07926.12 gi|55378937|ref|YP_136787.1| - 1.3 9.1 65.4 1 9.4 15.5 5.9 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein DUF1664 PF07889.12 gi|55378937|ref|YP_136787.1| - 1.6 8.7 44.6 0.51 10.4 2.6 5.8 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|55378937|ref|YP_136787.1| - 1.9 8.7 46.2 0.75 10.0 12.7 4.6 3 1 0 4 4 4 0 Fibrinogen alpha/beta chain family FapA PF03961.13 gi|55378937|ref|YP_136787.1| - 1.9 7.0 47.7 1.8 7.1 7.9 4.2 1 1 2 4 4 4 0 Flagellar Assembly Protein A Occludin_ELL PF07303.13 gi|55378937|ref|YP_136787.1| - 2.1 9.1 29.8 15 6.4 0.1 4.8 2 2 2 4 4 4 0 Occludin homology domain FlaC_arch PF05377.11 gi|55378937|ref|YP_136787.1| - 2.4 8.6 56.2 0.11 13.0 1.1 8.7 6 3 3 9 9 6 0 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|55378937|ref|YP_136787.1| - 2.9 7.9 77.6 2.2 8.3 12.4 5.5 1 1 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|55378937|ref|YP_136787.1| - 3.6 6.8 60.1 0.083 12.2 4.4 5.8 3 2 3 6 6 5 0 Protein of unknown function (DUF3450) FAM76 PF16046.5 gi|55378937|ref|YP_136787.1| - 3.8 6.8 31.4 1 8.7 6.2 2.8 2 1 1 3 3 3 0 FAM76 protein DUF724 PF05266.14 gi|55378937|ref|YP_136787.1| - 4.3 7.1 54.3 0.69 9.7 17.6 4.4 2 2 3 5 5 5 0 Protein of unknown function (DUF724) CEP63 PF17045.5 gi|55378937|ref|YP_136787.1| - 4.4 7.1 55.9 6.3 6.6 23.4 2.7 2 1 0 2 2 2 0 Centrosomal protein of 63 kDa APG6_N PF17675.1 gi|55378937|ref|YP_136787.1| - 7.2 7.1 89.9 2.5 8.7 20.1 6.3 1 1 3 5 5 5 0 Apg6 coiled-coil region CRCB PF02537.15 gi|55378939|ref|YP_136789.1| - 1.7e-16 60.3 12.3 3e-16 59.5 12.3 1.4 1 1 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|55378940|ref|YP_136790.1| - 1.5e-21 76.5 11.8 1.8e-21 76.3 11.8 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF853 PF05872.12 gi|55378941|ref|YP_136791.1| - 1.9e-07 30.1 0.5 0.0022 16.7 0.1 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|55378941|ref|YP_136791.1| - 0.00012 22.3 0.0 0.00023 21.3 0.0 1.4 2 0 0 2 2 2 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|55378941|ref|YP_136791.1| - 0.002 17.5 0.1 0.64 9.3 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|55378941|ref|YP_136791.1| - 0.0028 16.6 0.0 1.2 7.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|55378941|ref|YP_136791.1| - 0.0055 17.1 0.2 0.012 16.0 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|55378941|ref|YP_136791.1| - 0.012 15.4 2.7 0.15 11.8 2.5 2.3 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|55378941|ref|YP_136791.1| - 0.021 14.1 0.1 0.04 13.2 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|55378941|ref|YP_136791.1| - 0.031 14.6 0.1 0.28 11.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|55378941|ref|YP_136791.1| - 0.059 13.6 0.0 2.4 8.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|55378941|ref|YP_136791.1| - 0.11 12.5 0.0 2.7 8.1 0.0 2.2 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Big_1 PF02369.16 gi|55378942|ref|YP_136792.1| - 6.2e-05 22.9 10.4 6.6e-05 22.8 8.0 2.0 1 1 0 2 2 2 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|55378942|ref|YP_136792.1| - 0.00062 20.0 6.7 0.00062 20.0 6.7 1.8 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|55378942|ref|YP_136792.1| - 0.0028 17.8 0.9 0.013 15.7 0.9 2.0 1 1 0 1 1 1 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|55378942|ref|YP_136792.1| - 0.006 16.9 6.9 0.0097 16.2 6.4 1.7 1 1 0 1 1 1 1 Invasin, domain 3 YtkA PF13115.6 gi|55378942|ref|YP_136792.1| - 0.018 15.6 2.6 0.06 14.0 2.3 1.9 1 1 1 2 2 2 0 YtkA-like DUF1735 PF08522.10 gi|55378942|ref|YP_136792.1| - 0.058 14.0 1.4 0.14 12.8 0.1 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF1735) PCMT PF01135.19 gi|55378943|ref|YP_136793.1| - 2.3e-37 128.8 0.0 3e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|55378943|ref|YP_136793.1| - 9.4e-09 35.2 0.0 1.3e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55378943|ref|YP_136793.1| - 4.9e-07 30.4 0.0 1.1e-06 29.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|55378943|ref|YP_136793.1| - 3.8e-06 26.6 0.2 9.1e-06 25.3 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|55378943|ref|YP_136793.1| - 0.00031 21.4 0.0 0.00056 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|55378943|ref|YP_136793.1| - 0.0038 16.3 0.0 0.0056 15.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|55378943|ref|YP_136793.1| - 0.0059 17.2 0.0 0.014 16.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|55378943|ref|YP_136793.1| - 0.0084 16.1 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|55378943|ref|YP_136793.1| - 0.016 14.9 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|55378943|ref|YP_136793.1| - 0.016 14.6 0.2 0.073 12.4 0.1 1.8 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) FAD_binding_2 PF00890.24 gi|55378943|ref|YP_136793.1| - 0.022 13.8 0.8 0.034 13.2 0.6 1.4 1 1 0 1 1 1 0 FAD binding domain Methyltransf_18 PF12847.7 gi|55378943|ref|YP_136793.1| - 0.033 14.1 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55378943|ref|YP_136793.1| - 0.048 13.5 0.0 0.069 13.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain AlaDh_PNT_C PF01262.21 gi|55378943|ref|YP_136793.1| - 0.081 12.2 0.1 0.13 11.5 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PCMT PF01135.19 gi|55378944|ref|YP_136794.1| - 2.4e-45 154.9 0.0 2.6e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|55378944|ref|YP_136794.1| - 8.1e-06 25.7 0.0 8.6e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|55378944|ref|YP_136794.1| - 1.7e-05 25.4 0.0 2.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55378944|ref|YP_136794.1| - 0.00011 22.1 0.0 0.00011 22.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|55378944|ref|YP_136794.1| - 0.0036 16.4 0.0 0.0046 16.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|55378944|ref|YP_136794.1| - 0.0048 16.2 0.0 0.0065 15.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|55378944|ref|YP_136794.1| - 0.0055 16.3 0.0 0.0073 15.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain DUF938 PF06080.12 gi|55378944|ref|YP_136794.1| - 0.018 14.8 0.0 0.021 14.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|55378944|ref|YP_136794.1| - 0.22 11.0 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.17 gi|55378944|ref|YP_136794.1| - 0.24 10.5 0.0 0.3 10.2 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin zinc_ribbon_5 PF13719.6 gi|55378945|ref|YP_136795.1| - 0.13 12.1 0.2 0.23 11.3 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|55378945|ref|YP_136795.1| - 0.14 12.1 2.8 1.1 9.3 3.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|55378945|ref|YP_136795.1| - 0.84 9.6 3.6 3.3 7.7 2.6 2.3 1 1 1 2 2 2 0 Nudix N-terminal DUF1648 PF07853.11 gi|55378946|ref|YP_136796.1| - 4.4e-17 61.5 0.8 4.4e-17 61.5 0.8 2.0 3 0 0 3 3 3 1 Protein of unknown function (DUF1648) DUF3995 PF13160.6 gi|55378946|ref|YP_136796.1| - 0.0086 16.4 5.9 0.0086 16.4 5.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3995) FUSC_2 PF13515.6 gi|55378946|ref|YP_136796.1| - 0.21 11.7 10.2 0.033 14.3 5.6 1.9 1 1 1 2 2 2 0 Fusaric acid resistance protein-like DUF5337 PF17272.2 gi|55378946|ref|YP_136796.1| - 2.3 8.1 8.5 1.3 8.9 4.9 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5337) Peptidase_M29 PF02073.15 gi|55378947|ref|YP_136797.1| - 4.2e-12 45.6 0.1 1.2e-09 37.5 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.20 gi|55378948|ref|YP_136798.1| - 8.9e-20 70.9 0.0 1.8e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|55378948|ref|YP_136798.1| - 7.1e-08 32.6 0.1 1.4e-07 31.7 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|55378948|ref|YP_136798.1| - 0.00011 22.5 0.0 0.0004 20.7 0.0 2.0 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|55378948|ref|YP_136798.1| - 0.0042 16.5 0.2 0.046 13.1 0.1 2.3 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|55378948|ref|YP_136798.1| - 0.0089 16.7 0.0 0.059 14.0 0.0 2.3 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Metallophos_2 PF12850.7 gi|55378949|ref|YP_136799.1| - 1.5e-34 119.6 0.0 1.6e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55378949|ref|YP_136799.1| - 4e-06 27.5 5.3 9.7e-05 22.9 0.3 2.5 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF5603 PF18231.1 gi|55378949|ref|YP_136799.1| - 0.094 13.0 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5603) PIN_5 PF08745.11 gi|55378950|ref|YP_136800.1| - 3.7e-80 268.2 0.2 4.2e-80 268.1 0.2 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease CorA PF01544.18 gi|55378950|ref|YP_136800.1| - 0.023 14.0 1.0 0.031 13.6 1.0 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Trigger_C PF05698.14 gi|55378950|ref|YP_136800.1| - 0.049 13.7 0.1 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus Lig_C PF18330.1 gi|55378951|ref|YP_136801.1| - 4.2e-43 146.3 0.0 6.2e-43 145.8 0.0 1.3 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|55378951|ref|YP_136801.1| - 4.3e-14 53.1 0.0 6.6e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|55378951|ref|YP_136801.1| - 0.0052 16.5 0.0 0.26 10.9 0.0 2.1 2 0 0 2 2 2 2 ATP dependent DNA ligase domain UvrD-helicase PF00580.21 gi|55378952|ref|YP_136802.1| - 3e-25 89.4 0.0 1.5e-11 44.4 0.0 2.5 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|55378952|ref|YP_136802.1| - 4.2e-24 85.5 0.0 9.5e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|55378952|ref|YP_136802.1| - 1.3e-17 64.3 0.1 2.3e-10 40.4 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|55378952|ref|YP_136802.1| - 6.7e-10 38.6 0.5 0.0014 18.4 0.0 2.9 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|55378952|ref|YP_136802.1| - 4.9e-07 29.7 0.0 0.00085 19.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|55378952|ref|YP_136802.1| - 2.1e-06 27.7 0.0 2.1 8.0 0.0 4.0 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.15 gi|55378952|ref|YP_136802.1| - 0.0013 16.9 0.0 0.0022 16.2 0.0 1.3 1 0 0 1 1 1 1 Origin of replication binding protein AAA_25 PF13481.6 gi|55378952|ref|YP_136802.1| - 0.0014 18.3 0.4 0.38 10.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|55378952|ref|YP_136802.1| - 0.0026 18.1 0.0 0.34 11.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|55378952|ref|YP_136802.1| - 0.042 13.6 0.0 0.21 11.3 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_12 PF13087.6 gi|55378952|ref|YP_136802.1| - 0.095 12.3 0.0 0.34 10.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|55378952|ref|YP_136802.1| - 0.11 11.7 0.0 1.6 7.9 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|55378952|ref|YP_136802.1| - 1.3 9.4 4.7 3.8 7.9 0.4 3.4 4 1 0 4 4 4 0 AAA domain DUF2269 PF10027.9 gi|55378953|ref|YP_136803.1| - 0.01 15.9 3.9 0.012 15.7 3.9 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) SafA PF17073.5 gi|55378953|ref|YP_136803.1| - 0.58 10.2 3.0 1.6 8.8 0.2 2.1 2 0 0 2 2 2 0 Two-component-system connector protein PadR PF03551.14 gi|55378954|ref|YP_136804.1| - 8.6e-09 35.2 0.0 1.5e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family PBP PF01161.20 gi|55378955|ref|YP_136805.1| - 7.7e-13 48.9 0.0 9.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein COX1 PF00115.20 gi|55378956|ref|YP_136806.1| - 6.5e-57 193.3 54.8 6.5e-57 193.3 54.8 2.2 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|55378956|ref|YP_136806.1| - 0.0046 17.2 1.0 0.0046 17.2 1.0 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) Hydrolase_4 PF12146.8 gi|55378957|ref|YP_136807.1| - 2.2e-11 43.5 0.1 5.1e-11 42.3 0.1 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|55378957|ref|YP_136807.1| - 7e-10 39.0 0.0 1.1e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|55378957|ref|YP_136807.1| - 6.3e-09 34.9 0.0 6.6e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|55378957|ref|YP_136807.1| - 6.1e-07 30.3 0.5 1.4e-06 29.1 0.2 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|55378957|ref|YP_136807.1| - 2.3e-06 27.2 0.1 9.6e-06 25.2 0.1 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|55378957|ref|YP_136807.1| - 2.6e-05 23.9 0.1 4.3e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|55378957|ref|YP_136807.1| - 0.0043 16.7 0.1 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 Putative esterase PAF-AH_p_II PF03403.13 gi|55378957|ref|YP_136807.1| - 0.028 13.0 0.0 4.5 5.7 0.0 2.1 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II BAAT_C PF08840.11 gi|55378957|ref|YP_136807.1| - 0.028 14.4 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|55378957|ref|YP_136807.1| - 0.041 13.4 0.0 1 8.9 0.0 2.1 1 1 0 1 1 1 0 Dienelactone hydrolase family DUF4231 PF14015.6 gi|55378957|ref|YP_136807.1| - 4 8.0 5.4 4.6 7.7 0.4 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) tRNA-synt_His PF13393.6 gi|55378958|ref|YP_136808.1| - 0.094 12.0 0.8 0.8 8.9 0.4 1.8 1 1 1 2 2 2 0 Histidyl-tRNA synthetase Glyoxalase PF00903.25 gi|55378959|ref|YP_136809.1| - 8e-26 90.7 0.0 2.2e-25 89.3 0.0 2.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|55378959|ref|YP_136809.1| - 1.5e-07 31.7 0.1 0.0011 19.3 0.0 3.2 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|55378959|ref|YP_136809.1| - 0.22 11.6 2.0 11 6.1 0.0 2.9 2 1 1 3 3 3 0 Glyoxalase-like domain CTP_transf_like PF01467.26 gi|55378960|ref|YP_136810.1| - 5.1e-08 33.2 0.6 3.2e-07 30.6 0.6 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|55378960|ref|YP_136810.1| - 0.023 14.6 0.1 0.042 13.8 0.1 1.5 2 0 0 2 2 2 0 FAD synthetase CbiQ PF02361.16 gi|55378961|ref|YP_136811.1| - 8.5e-29 100.7 9.1 1.1e-28 100.3 9.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein DsrH PF04077.12 gi|55378961|ref|YP_136811.1| - 0.052 13.7 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 DsrH like protein PDGLE PF13190.6 gi|55378962|ref|YP_136812.1| - 7.1e-10 38.7 1.9 1.1e-09 38.0 1.9 1.4 1 1 0 1 1 1 1 PDGLE domain Yip1 PF04893.17 gi|55378962|ref|YP_136812.1| - 0.0058 16.4 0.8 0.0075 16.0 0.8 1.2 1 0 0 1 1 1 1 Yip1 domain DUF441 PF04284.13 gi|55378962|ref|YP_136812.1| - 0.064 13.3 1.3 0.078 13.0 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF441) CbiM PF01891.16 gi|55378963|ref|YP_136813.1| - 7.1e-63 212.2 19.4 7.9e-63 212.0 19.4 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|55378963|ref|YP_136813.1| - 1.5 8.9 19.0 1.7 8.7 17.8 1.7 1 1 0 1 1 1 0 ECF transporter, substrate-specific component NikR_C PF08753.11 gi|55378964|ref|YP_136814.1| - 2.1e-25 88.7 8.7 2.8e-25 88.3 8.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|55378964|ref|YP_136814.1| - 4.2e-06 26.5 0.7 7.4e-06 25.7 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RNA_GG_bind PF10258.9 gi|55378964|ref|YP_136814.1| - 0.043 13.9 0.1 0.066 13.3 0.1 1.2 1 0 0 1 1 1 0 PHAX RNA-binding domain Rx_N PF18052.1 gi|55378964|ref|YP_136814.1| - 0.057 13.7 0.4 0.43 10.9 0.1 2.2 1 1 1 2 2 2 0 Rx N-terminal domain Phage_integrase PF00589.22 gi|55378965|ref|YP_136815.1| - 6.5e-09 35.8 0.0 5.2e-08 32.9 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55378965|ref|YP_136815.1| - 7.2e-08 32.6 0.0 1.8e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain MarR PF01047.22 gi|55378966|ref|YP_136816.1| - 6.4e-05 22.8 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|55378966|ref|YP_136816.1| - 0.00031 20.6 0.3 0.00052 19.9 0.3 1.4 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_20 PF12840.7 gi|55378966|ref|YP_136816.1| - 0.00037 20.5 0.0 0.00053 20.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55378966|ref|YP_136816.1| - 0.00041 20.2 0.0 0.00055 19.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|55378966|ref|YP_136816.1| - 0.007 15.9 0.6 0.041 13.5 0.6 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|55378966|ref|YP_136816.1| - 0.0087 15.8 0.0 0.011 15.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|55378966|ref|YP_136816.1| - 0.012 15.6 0.0 0.02 14.9 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix RepL PF05732.11 gi|55378966|ref|YP_136816.1| - 0.021 14.3 0.0 0.042 13.3 0.0 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Mrr_N PF14338.6 gi|55378966|ref|YP_136816.1| - 0.034 14.3 0.0 0.16 12.1 0.0 2.0 1 1 0 1 1 1 0 Mrr N-terminal domain Fe_dep_repress PF01325.19 gi|55378966|ref|YP_136816.1| - 0.039 14.1 0.1 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|55378966|ref|YP_136816.1| - 0.08 13.5 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|55378966|ref|YP_136816.1| - 0.084 12.8 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_WhiA PF02650.14 gi|55378966|ref|YP_136816.1| - 0.086 13.2 0.1 0.12 12.7 0.1 1.2 1 0 0 1 1 1 0 WhiA C-terminal HTH domain HTH_Crp_2 PF13545.6 gi|55378966|ref|YP_136816.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.14 gi|55378966|ref|YP_136816.1| - 0.11 12.4 0.1 0.4 10.7 0.1 1.9 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Replic_Relax PF13814.6 gi|55378966|ref|YP_136816.1| - 0.13 12.3 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_IclR PF09339.10 gi|55378966|ref|YP_136816.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 1 0 1 1 1 0 IclR helix-turn-helix domain Arg_repressor PF01316.21 gi|55378966|ref|YP_136816.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Tmemb_170 PF10190.9 gi|55378967|ref|YP_136817.1| - 0.08 13.3 0.5 0.08 13.3 0.5 2.6 3 0 0 3 3 3 0 Putative transmembrane protein 170 Pho86 PF11124.8 gi|55378969|ref|YP_136819.1| - 3.8 6.9 10.7 0.08 12.4 4.0 1.6 2 0 0 2 2 2 0 Inorganic phosphate transporter Pho86 DUF2027 PF09640.10 gi|55378972|ref|YP_136822.1| - 0.013 15.1 0.2 0.024 14.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2027) YnfE PF17452.2 gi|55378972|ref|YP_136822.1| - 0.014 15.7 0.4 0.066 13.5 0.6 1.9 2 0 0 2 2 2 0 Uncharacterized YnfE-like DUF4140 PF13600.6 gi|55378972|ref|YP_136822.1| - 0.11 13.0 0.7 0.18 12.3 0.7 1.3 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) TrbC PF04956.13 gi|55378973|ref|YP_136823.1| - 0.15 12.3 1.7 12 6.2 0.1 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family Tmemb_14 PF03647.13 gi|55378974|ref|YP_136824.1| - 0.069 13.9 0.0 0.1 13.3 0.0 1.2 1 0 0 1 1 1 0 Transmembrane proteins 14C DUF4381 PF14316.6 gi|55378974|ref|YP_136824.1| - 0.078 13.2 1.8 0.16 12.2 1.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) CoatB PF10389.9 gi|55378974|ref|YP_136824.1| - 8 6.4 7.4 1.1 9.1 1.9 2.2 2 0 0 2 2 2 0 Bacteriophage coat protein B AAA_30 PF13604.6 gi|55378975|ref|YP_136825.1| - 0.095 12.4 0.0 0.34 10.6 0.0 1.8 1 1 1 2 2 2 0 AAA domain SIR2_2 PF13289.6 gi|55378976|ref|YP_136826.1| - 6.8e-25 87.8 0.3 1.1e-22 80.7 0.1 2.9 2 0 0 2 2 2 2 SIR2-like domain OST-HTH PF12872.7 gi|55378976|ref|YP_136826.1| - 0.1 12.4 0.0 1.5 8.7 0.0 2.5 2 0 0 2 2 2 0 OST-HTH/LOTUS domain HTH_29 PF13551.6 gi|55378977|ref|YP_136827.1| - 0.012 15.6 0.1 0.05 13.6 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.6 gi|55378977|ref|YP_136827.1| - 0.016 15.3 0.7 0.12 12.6 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain tRNA_NucTransf2 PF09249.11 gi|55378979|ref|YP_136829.1| - 7.8e-43 145.3 0.0 1.4e-42 144.5 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|55378979|ref|YP_136829.1| - 6.9e-14 51.9 0.0 1.3e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain TAL_effector PF03377.13 gi|55378979|ref|YP_136829.1| - 0.056 13.8 0.3 10 6.5 0.0 3.5 3 0 0 3 3 3 0 TAL effector repeat Hist_deacetyl PF00850.19 gi|55378980|ref|YP_136830.1| - 9.8e-80 268.3 0.0 1.4e-79 267.8 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.23 gi|55378981|ref|YP_136831.1| - 8.5e-22 77.2 0.1 1.1e-12 48.0 0.2 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|55378981|ref|YP_136831.1| - 3.2e-12 46.9 0.6 4.9e-08 33.4 0.2 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|55378981|ref|YP_136831.1| - 0.00072 19.7 0.2 0.0018 18.3 0.1 1.6 2 0 0 2 2 2 1 Centromere kinetochore component CENP-T histone fold DUF1931 PF09123.11 gi|55378981|ref|YP_136831.1| - 0.0062 16.7 0.7 0.03 14.4 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1931) CENP-S PF15630.6 gi|55378981|ref|YP_136831.1| - 0.022 15.1 0.4 0.037 14.4 0.4 1.4 1 0 0 1 1 1 0 CENP-S protein tRNA_anti-codon PF01336.25 gi|55378982|ref|YP_136832.1| - 1.7e-29 101.6 9.5 3.4e-12 46.2 0.1 4.2 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|55378982|ref|YP_136832.1| - 3.4e-12 46.1 2.0 5.2e-06 26.3 0.2 3.3 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|55378982|ref|YP_136832.1| - 2.1e-08 34.2 0.0 0.089 12.5 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 DUF4131 PF13567.6 gi|55378982|ref|YP_136832.1| - 0.073 12.7 0.1 36 4.0 0.0 3.7 4 1 0 4 4 4 0 Domain of unknown function (DUF4131) tRNA_anti_2 PF13742.6 gi|55378982|ref|YP_136832.1| - 0.083 13.1 0.2 18 5.6 0.0 3.5 4 0 0 4 4 4 0 OB-fold nucleic acid binding domain KcnmB2_inactiv PF09303.10 gi|55378984|ref|YP_136834.1| - 0.029 14.2 0.2 0.039 13.7 0.2 1.3 1 0 0 1 1 1 0 KCNMB2, ball and chain domain Epimerase PF01370.21 gi|55378985|ref|YP_136835.1| - 8.4e-21 74.5 0.0 1.5e-20 73.7 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|55378985|ref|YP_136835.1| - 1.2e-12 47.4 0.0 2.3e-12 46.5 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|55378985|ref|YP_136835.1| - 2.9e-11 43.0 0.0 2.3e-10 40.1 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|55378985|ref|YP_136835.1| - 8.2e-11 41.6 0.2 2.8e-07 30.0 0.2 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|55378985|ref|YP_136835.1| - 5.5e-09 35.9 0.0 1.7e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|55378985|ref|YP_136835.1| - 1.9e-08 34.4 0.0 2.5e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|55378985|ref|YP_136835.1| - 0.029 13.5 0.2 0.065 12.3 0.2 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 gi|55378985|ref|YP_136835.1| - 0.036 13.6 0.1 0.07 12.7 0.1 1.5 1 1 0 1 1 1 0 NmrA-like family KR PF08659.10 gi|55378985|ref|YP_136835.1| - 0.095 12.6 0.1 1.9 8.4 0.1 2.2 1 1 0 1 1 1 0 KR domain DHNA PF04038.12 gi|55378986|ref|YP_136836.1| - 1.3e-39 135.1 0.1 1.4e-39 134.9 0.1 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Laminin_II PF06009.12 gi|55378988|ref|YP_136838.1| - 0.011 15.7 0.4 0.058 13.4 0.0 2.0 1 1 1 2 2 2 0 Laminin Domain II Phe_tRNA-synt_N PF02912.18 gi|55378988|ref|YP_136838.1| - 0.014 15.3 0.0 0.042 13.8 0.0 1.8 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain COX2 PF00116.20 gi|55378990|ref|YP_136840.1| - 1.7e-18 66.7 0.0 3e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|55378990|ref|YP_136840.1| - 0.00027 21.0 0.0 0.00042 20.4 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX14 PF14880.6 gi|55378990|ref|YP_136840.1| - 0.045 13.6 2.9 0.058 13.2 0.7 2.2 2 0 0 2 2 2 0 Cytochrome oxidase c assembly COX1 PF00115.20 gi|55378991|ref|YP_136841.1| - 4.6e-123 411.3 66.9 4.6e-123 411.3 66.9 3.1 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|55378991|ref|YP_136841.1| - 4.2e-16 59.6 15.8 4.2e-16 59.6 15.8 2.8 2 0 0 2 2 2 1 Cytochrome c oxidase subunit III Spore_YhaL PF14147.6 gi|55378991|ref|YP_136841.1| - 0.059 13.1 0.0 0.059 13.1 0.0 2.5 3 0 0 3 3 3 0 Sporulation protein YhaL COX4_pro PF03626.14 gi|55378992|ref|YP_136842.1| - 1.1e-09 38.6 7.1 2.4e-09 37.4 7.2 1.5 1 1 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF3487 PF11990.8 gi|55378993|ref|YP_136843.1| - 3.9 7.4 8.9 0.22 11.4 2.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3487) ABC_membrane PF00664.23 gi|55378994|ref|YP_136844.1| - 7.3e-41 140.6 0.7 9.7e-41 140.2 0.7 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|55378994|ref|YP_136844.1| - 8.3e-38 130.0 0.1 1.9e-37 128.8 0.0 1.7 2 0 0 2 2 1 1 ABC transporter AAA_16 PF13191.6 gi|55378994|ref|YP_136844.1| - 5.3e-05 23.7 0.1 0.00012 22.6 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55378994|ref|YP_136844.1| - 0.00016 21.9 0.2 0.0028 17.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|55378994|ref|YP_136844.1| - 0.00026 20.5 0.0 0.013 14.9 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|55378994|ref|YP_136844.1| - 0.0013 18.6 0.0 0.0034 17.3 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|55378994|ref|YP_136844.1| - 0.0017 18.1 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|55378994|ref|YP_136844.1| - 0.0043 16.9 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|55378994|ref|YP_136844.1| - 0.0089 15.8 0.7 0.025 14.3 0.7 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|55378994|ref|YP_136844.1| - 0.011 15.8 0.1 0.2 11.7 0.0 2.7 3 0 0 3 3 3 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|55378994|ref|YP_136844.1| - 0.013 15.3 0.1 0.038 13.7 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|55378994|ref|YP_136844.1| - 0.018 14.3 0.1 0.035 13.4 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|55378994|ref|YP_136844.1| - 0.027 15.0 0.0 0.067 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|55378994|ref|YP_136844.1| - 0.028 14.6 0.0 0.099 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|55378994|ref|YP_136844.1| - 0.031 14.8 0.0 0.057 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|55378994|ref|YP_136844.1| - 0.04 13.9 0.5 0.31 11.0 0.3 2.6 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|55378994|ref|YP_136844.1| - 0.053 13.9 0.1 0.48 10.9 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF3080 PF11279.8 gi|55378994|ref|YP_136844.1| - 0.13 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) AAA_7 PF12775.7 gi|55378994|ref|YP_136844.1| - 0.16 11.5 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Cuticle_1 PF08140.11 gi|55378994|ref|YP_136844.1| - 0.31 11.1 2.2 11 6.1 0.3 2.7 2 0 0 2 2 2 0 Crustacean cuticle protein repeat DUF192 PF02643.15 gi|55378995|ref|YP_136845.1| - 3.7e-31 107.1 0.0 5.1e-31 106.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.11 gi|55378995|ref|YP_136845.1| - 0.057 13.5 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Zn-ribbon_8 PF09723.10 gi|55378996|ref|YP_136846.1| - 0.00015 21.8 4.1 0.011 15.8 0.8 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|55378996|ref|YP_136846.1| - 0.00075 19.4 0.4 0.00084 19.3 0.4 1.0 1 0 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|55378996|ref|YP_136846.1| - 0.001 19.0 1.2 0.0012 18.7 1.2 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-C2H2_4 PF13894.6 gi|55378996|ref|YP_136846.1| - 0.0029 18.3 1.2 0.18 12.7 0.1 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger DZR PF12773.7 gi|55378996|ref|YP_136846.1| - 0.004 17.2 0.4 0.0043 17.1 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|55378996|ref|YP_136846.1| - 0.0048 16.5 1.3 0.049 13.2 0.1 2.0 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|55378996|ref|YP_136846.1| - 0.0056 16.6 0.2 0.0071 16.3 0.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 gi|55378996|ref|YP_136846.1| - 0.0071 16.7 1.4 0.018 15.5 0.1 1.9 2 0 0 2 2 2 1 Zinc finger, C2H2 type HalOD2 PF18547.1 gi|55378996|ref|YP_136846.1| - 0.012 15.5 1.1 2.4 8.1 0.0 2.0 1 1 1 2 2 2 0 Halobacterial output domain 2 C1_2 PF03107.16 gi|55378996|ref|YP_136846.1| - 0.013 15.8 1.3 0.015 15.6 1.3 1.1 1 0 0 1 1 1 0 C1 domain zf-Mss51 PF13824.6 gi|55378996|ref|YP_136846.1| - 0.014 15.5 1.4 0.016 15.3 1.4 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.12 gi|55378996|ref|YP_136846.1| - 0.019 14.4 4.5 0.022 14.3 4.5 1.1 1 0 0 1 1 1 0 TFIIB zinc-binding zf-H2C2_2 PF13465.6 gi|55378996|ref|YP_136846.1| - 0.034 14.6 4.6 0.084 13.3 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger double domain zf-TFIIB PF13453.6 gi|55378996|ref|YP_136846.1| - 0.053 12.9 2.4 0.074 12.4 2.4 1.2 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.6 gi|55378996|ref|YP_136846.1| - 0.11 12.4 0.9 3.8 7.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_6 PF13912.6 gi|55378996|ref|YP_136846.1| - 0.2 11.7 0.1 0.2 11.7 0.1 1.6 2 0 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.18 gi|55378996|ref|YP_136846.1| - 0.34 10.8 3.6 1.5 8.7 0.2 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|55378996|ref|YP_136846.1| - 0.48 10.2 4.7 0.79 9.5 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain HypA PF01155.19 gi|55378996|ref|YP_136846.1| - 0.52 10.4 2.5 0.86 9.7 2.5 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF983 PF06170.12 gi|55378996|ref|YP_136846.1| - 1.4 9.4 2.7 6.3 7.3 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) MCM PF00493.23 gi|55378998|ref|YP_136848.1| - 2.6e-78 262.2 0.0 3.6e-78 261.7 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|55378998|ref|YP_136848.1| - 1.1e-24 86.6 0.0 2e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|55378998|ref|YP_136848.1| - 1.6e-21 76.5 0.2 4.5e-21 75.1 0.2 1.8 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|55378998|ref|YP_136848.1| - 3.9e-10 39.5 0.0 1.1e-05 25.0 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|55378998|ref|YP_136848.1| - 1e-09 38.5 0.0 2.6e-09 37.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM_N PF14551.6 gi|55378998|ref|YP_136848.1| - 6.9e-08 33.0 3.1 1.1e-07 32.3 1.2 2.2 2 0 0 2 2 2 1 MCM N-terminal domain Sigma54_activat PF00158.26 gi|55378998|ref|YP_136848.1| - 0.00016 21.4 0.0 0.00083 19.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|55378998|ref|YP_136848.1| - 0.0012 19.3 0.1 0.0056 17.1 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|55378998|ref|YP_136848.1| - 0.0051 17.2 0.0 0.017 15.5 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|55378998|ref|YP_136848.1| - 0.024 14.4 0.1 0.069 12.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55378998|ref|YP_136848.1| - 0.082 13.4 0.0 0.5 10.9 0.0 2.4 1 1 0 1 1 1 0 ABC transporter AAA_3 PF07726.11 gi|55378998|ref|YP_136848.1| - 0.089 12.7 0.0 0.4 10.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|55378998|ref|YP_136848.1| - 0.089 11.9 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|55378998|ref|YP_136848.1| - 0.1 13.1 2.1 1.2 9.7 0.0 3.5 3 1 1 4 4 4 0 AAA domain AAA_22 PF13401.6 gi|55378998|ref|YP_136848.1| - 0.11 12.7 0.1 0.49 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|55378998|ref|YP_136848.1| - 0.14 12.1 0.0 0.4 10.6 0.0 1.7 1 0 0 1 1 1 0 NACHT domain Zn-ribbon_8 PF09723.10 gi|55378998|ref|YP_136848.1| - 1 9.6 3.4 2.9 8.1 3.4 1.8 1 0 0 1 1 1 0 Zinc ribbon domain DUF4065 PF13274.6 gi|55378999|ref|YP_136849.1| - 5.9e-13 49.7 0.3 9.7e-13 49.0 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) PSD5 PF07637.11 gi|55378999|ref|YP_136849.1| - 0.14 12.5 0.0 7 7.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) GIY-YIG PF01541.24 gi|55379000|ref|YP_136850.1| - 6.7e-08 32.7 0.4 0.0015 18.7 0.0 2.6 2 0 0 2 2 2 2 GIY-YIG catalytic domain Phage_integrase PF00589.22 gi|55379001|ref|YP_136851.1| - 5.3e-13 49.1 0.0 9.1e-13 48.3 0.0 1.3 1 1 0 1 1 1 1 Phage integrase family HTH_24 PF13412.6 gi|55379002|ref|YP_136852.1| - 0.19 11.3 0.0 0.34 10.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MazG-like PF12643.7 gi|55379004|ref|YP_136854.1| - 5.2e-12 45.9 0.5 7.5e-12 45.3 0.5 1.3 1 0 0 1 1 1 1 MazG-like family MazG PF03819.17 gi|55379004|ref|YP_136854.1| - 7.5e-09 35.7 0.8 7.5e-09 35.7 0.8 1.7 2 1 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.17 gi|55379004|ref|YP_136854.1| - 0.0002 21.8 0.1 0.00029 21.2 0.1 1.4 1 1 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase dUTPase_2 PF08761.11 gi|55379004|ref|YP_136854.1| - 0.019 15.1 0.7 0.028 14.6 0.7 1.3 1 0 0 1 1 1 0 dUTPase P3A PF08727.11 gi|55379004|ref|YP_136854.1| - 0.12 11.8 0.0 0.26 10.7 0.0 1.6 1 0 0 1 1 1 0 Poliovirus 3A protein like DUF550 PF04447.12 gi|55379004|ref|YP_136854.1| - 0.13 12.4 0.1 0.28 11.3 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF550) DUF2075 PF09848.9 gi|55379005|ref|YP_136855.1| - 4.2e-102 342.1 0.0 5.4e-102 341.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|55379005|ref|YP_136855.1| - 3.2e-07 30.7 0.2 4.7e-06 26.9 0.2 2.7 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|55379005|ref|YP_136855.1| - 7.7e-07 29.3 0.1 0.0057 16.7 0.0 2.6 1 1 1 2 2 2 2 Type III restriction enzyme, res subunit AAA PF00004.29 gi|55379005|ref|YP_136855.1| - 8.6e-06 26.2 0.2 5.4e-05 23.6 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|55379005|ref|YP_136855.1| - 2.3e-05 24.9 0.0 5e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|55379005|ref|YP_136855.1| - 0.00016 21.1 0.2 0.0003 20.2 0.2 1.3 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|55379005|ref|YP_136855.1| - 0.00023 19.9 0.0 0.00034 19.4 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.6 gi|55379005|ref|YP_136855.1| - 0.0021 18.4 0.0 0.0045 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55379005|ref|YP_136855.1| - 0.0042 16.8 0.0 0.0076 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|55379005|ref|YP_136855.1| - 0.0067 16.1 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_11 PF13086.6 gi|55379005|ref|YP_136855.1| - 0.0075 16.1 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain Torsin PF06309.11 gi|55379005|ref|YP_136855.1| - 0.0088 16.1 0.0 0.032 14.3 0.0 1.9 2 0 0 2 2 2 1 Torsin TIP49 PF06068.13 gi|55379005|ref|YP_136855.1| - 0.034 13.3 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_7 PF12775.7 gi|55379005|ref|YP_136855.1| - 0.04 13.4 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|55379005|ref|YP_136855.1| - 0.051 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_25 PF13481.6 gi|55379005|ref|YP_136855.1| - 0.06 12.9 0.0 0.13 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|55379005|ref|YP_136855.1| - 0.068 12.9 0.0 4.7 6.9 0.0 2.7 2 1 1 3 3 3 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|55379005|ref|YP_136855.1| - 0.072 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|55379005|ref|YP_136855.1| - 0.078 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|55379005|ref|YP_136855.1| - 0.08 13.0 0.1 5.7 7.0 0.0 2.5 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|55379005|ref|YP_136855.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_33 PF13671.6 gi|55379005|ref|YP_136855.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF5446 PF17522.2 gi|55379006|ref|YP_136856.1| - 0.16 12.1 4.5 0.22 11.7 4.5 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5446) HEAT_2 PF13646.6 gi|55379008|ref|YP_136858.1| - 0.026 14.9 0.0 0.028 14.8 0.0 1.1 1 0 0 1 1 1 0 HEAT repeats Phage_integrase PF00589.22 gi|55379009|ref|YP_136859.1| - 2.1e-16 60.2 0.0 4.5e-16 59.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Ead_Ea22 PF13935.6 gi|55379009|ref|YP_136859.1| - 0.0036 18.0 3.0 1.5 9.5 0.2 2.6 2 0 0 2 2 2 2 Ead/Ea22-like protein DZR PF12773.7 gi|55379009|ref|YP_136859.1| - 0.035 14.1 0.4 0.081 13.0 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon FYDLN_acid PF09538.10 gi|55379009|ref|YP_136859.1| - 1 10.1 4.3 0.49 11.1 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) SecD-TM1 PF13721.6 gi|55379010|ref|YP_136860.1| - 0.086 13.3 0.1 0.13 12.8 0.1 1.3 1 0 0 1 1 1 0 SecD export protein N-terminal TM region Phage_Gp23 PF10669.9 gi|55379010|ref|YP_136860.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) PRC PF05239.16 gi|55379011|ref|YP_136861.1| - 0.027 14.5 0.3 0.064 13.3 0.3 1.8 1 1 0 1 1 1 0 PRC-barrel domain HSP20 PF00011.21 gi|55379013|ref|YP_136862.1| - 2.8e-17 62.7 0.0 4.5e-17 62.1 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|55379013|ref|YP_136862.1| - 1.3e-09 37.4 0.0 2.4e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA FAD-oxidase_C PF02913.19 gi|55379012|ref|YP_136863.1| - 2.6e-64 217.3 0.0 6.9e-64 215.9 0.0 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|55379012|ref|YP_136863.1| - 4.8e-39 133.3 0.1 1e-38 132.2 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|55379012|ref|YP_136863.1| - 2.5e-09 37.6 4.8 5e-09 36.6 4.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|55379012|ref|YP_136863.1| - 1.9e-08 34.6 5.3 4.2e-08 33.5 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|55379012|ref|YP_136863.1| - 1.2e-07 31.9 0.0 3.4e-05 24.0 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|55379012|ref|YP_136863.1| - 0.00022 21.3 3.6 0.0087 16.2 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55379012|ref|YP_136863.1| - 0.00052 20.1 1.8 0.028 14.6 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|55379012|ref|YP_136863.1| - 0.00061 19.3 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.6 gi|55379012|ref|YP_136863.1| - 0.011 15.8 1.9 0.16 12.1 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55379012|ref|YP_136863.1| - 0.3 11.7 7.9 2 9.1 8.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|55379012|ref|YP_136863.1| - 0.53 10.2 14.5 0.12 12.3 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|55379012|ref|YP_136863.1| - 7.7 6.8 12.1 0.68 10.1 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HisKA_4TM PF16926.5 gi|55379015|ref|YP_136865.1| - 6.3e-81 269.8 7.2 1.1e-80 269.0 7.2 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|55379015|ref|YP_136865.1| - 1.3e-09 38.5 0.0 3.1e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|55379015|ref|YP_136865.1| - 0.0032 17.4 0.2 0.0088 16.0 0.2 1.7 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain adh_short PF00106.25 gi|55379015|ref|YP_136865.1| - 0.077 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase CSD PF00313.22 gi|55379016|ref|YP_136866.1| - 3.2e-20 71.7 0.1 3.5e-20 71.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|55379016|ref|YP_136866.1| - 0.074 12.7 2.5 0.096 12.4 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|55379016|ref|YP_136866.1| - 0.22 11.5 1.9 0.48 10.4 1.9 1.7 1 1 0 1 1 1 0 S1-like CSD PF00313.22 gi|55379017|ref|YP_136867.1| - 1.2e-20 73.1 0.1 1.3e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|55379017|ref|YP_136867.1| - 0.0088 15.9 0.0 0.0099 15.7 0.0 1.1 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|55379017|ref|YP_136867.1| - 0.016 15.1 1.0 0.024 14.5 1.0 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|55379017|ref|YP_136867.1| - 0.018 14.7 2.5 0.028 14.1 2.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.8 gi|55379017|ref|YP_136867.1| - 0.047 13.7 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF DUF429 PF04250.13 gi|55379018|ref|YP_136868.1| - 7.2e-46 156.6 4.0 8.4e-46 156.4 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) Lar_restr_allev PF14354.6 gi|55379020|ref|YP_136870.1| - 0.0047 17.3 0.5 0.0054 17.1 0.5 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-HYPF PF07503.12 gi|55379020|ref|YP_136870.1| - 0.02 14.7 0.7 0.02 14.7 0.7 2.0 2 0 0 2 2 2 0 HypF finger Zn-ribbon_8 PF09723.10 gi|55379020|ref|YP_136870.1| - 0.069 13.3 3.1 0.18 11.9 3.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|55379020|ref|YP_136870.1| - 0.14 11.7 1.9 4.1 7.1 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger VP_N-CPKC PF11475.8 gi|55379020|ref|YP_136870.1| - 0.6 10.1 3.5 1.4 8.9 0.2 2.3 2 0 0 2 2 2 0 Virion protein N terminal domain NTP_transferase PF00483.23 gi|55379021|ref|YP_136871.1| - 3.5e-38 131.6 0.0 4.3e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55379021|ref|YP_136871.1| - 2.2e-16 60.6 0.3 2.6e-16 60.4 0.3 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|55379021|ref|YP_136871.1| - 3.1e-05 23.8 0.0 5.5e-05 23.0 0.0 1.6 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|55379021|ref|YP_136871.1| - 0.12 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF4864 PF16156.5 gi|55379022|ref|YP_136872.1| - 3.5e-10 40.5 0.0 5.8e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4864) BPD_transp_1 PF00528.22 gi|55379023|ref|YP_136873.1| - 2.4e-13 50.2 17.7 2.4e-13 50.2 17.7 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55379024|ref|YP_136874.1| - 3.9e-14 52.8 17.4 3.9e-14 52.8 17.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|55379025|ref|YP_136875.1| - 5.8e-31 108.3 7.3 8.3e-31 107.8 7.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55379025|ref|YP_136875.1| - 3.2e-18 66.8 9.2 5.4e-18 66.0 9.2 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55379025|ref|YP_136875.1| - 0.0023 17.7 0.4 0.0062 16.3 0.4 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Vta1_C PF18097.1 gi|55379025|ref|YP_136875.1| - 0.71 9.6 4.7 8.2 6.2 0.2 2.5 2 0 0 2 2 2 0 Vta1 C-terminal domain Alpha-amylase PF00128.24 gi|55379026|ref|YP_136876.1| - 9e-47 160.3 0.0 1.4e-46 159.7 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|55379026|ref|YP_136876.1| - 9.2e-07 29.1 0.0 3.6e-06 27.2 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|55379026|ref|YP_136876.1| - 0.00045 20.3 0.0 0.0013 18.8 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain Alpha-amylase_C PF02806.18 gi|55379026|ref|YP_136876.1| - 0.00057 20.3 0.1 0.019 15.4 0.0 3.3 3 1 1 4 4 4 1 Alpha amylase, C-terminal all-beta domain AMPK1_CBM PF16561.5 gi|55379026|ref|YP_136876.1| - 0.00074 19.7 0.0 0.0019 18.3 0.0 1.7 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase Glyco_hydro_42C PF08533.10 gi|55379026|ref|YP_136876.1| - 0.024 14.3 0.7 0.083 12.6 0.1 2.3 3 0 0 3 3 3 0 Beta-galactosidase C-terminal domain hDGE_amylase PF14701.6 gi|55379026|ref|YP_136876.1| - 0.22 10.6 0.0 0.33 10.0 0.0 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain ABC_tran PF00005.27 gi|55379027|ref|YP_136877.1| - 7.5e-33 113.9 0.0 1.3e-32 113.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|55379027|ref|YP_136877.1| - 1.2e-11 44.7 0.5 2.4e-10 40.4 0.2 2.9 2 1 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|55379027|ref|YP_136877.1| - 3.3e-08 34.2 0.0 3e-07 31.2 0.0 2.7 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|55379027|ref|YP_136877.1| - 6.8e-08 32.7 0.0 0.0004 20.3 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|55379027|ref|YP_136877.1| - 1.5e-07 31.6 0.0 6.1e-07 29.6 0.0 2.1 1 1 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|55379027|ref|YP_136877.1| - 0.00028 20.4 0.2 0.002 17.6 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|55379027|ref|YP_136877.1| - 0.003 18.0 0.1 0.0048 17.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379027|ref|YP_136877.1| - 0.005 17.1 0.0 0.0095 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|55379027|ref|YP_136877.1| - 0.019 14.9 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|55379027|ref|YP_136877.1| - 0.041 13.8 0.0 0.083 12.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|55379027|ref|YP_136877.1| - 0.057 13.2 0.1 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA PF00004.29 gi|55379027|ref|YP_136877.1| - 0.069 13.6 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|55379027|ref|YP_136877.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|55379027|ref|YP_136877.1| - 0.15 12.7 0.0 0.25 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55379027|ref|YP_136877.1| - 0.15 12.3 0.1 0.39 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|55379027|ref|YP_136877.1| - 0.15 12.5 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_15 PF13175.6 gi|55379027|ref|YP_136877.1| - 0.19 11.4 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Regulator_TrmB PF11495.8 gi|55379029|ref|YP_136879.1| - 1.1e-70 237.5 0.1 1.6e-70 236.9 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|55379029|ref|YP_136879.1| - 3.8e-16 58.7 0.0 7.7e-16 57.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55379029|ref|YP_136879.1| - 0.00022 21.0 0.0 0.0011 18.8 0.0 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|55379029|ref|YP_136879.1| - 0.0047 16.8 0.0 0.015 15.2 0.0 1.9 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|55379029|ref|YP_136879.1| - 0.006 16.4 0.0 0.023 14.5 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|55379029|ref|YP_136879.1| - 0.011 16.0 0.0 0.027 14.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|55379029|ref|YP_136879.1| - 0.018 14.9 0.0 0.085 12.7 0.0 2.2 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|55379029|ref|YP_136879.1| - 0.022 14.8 0.0 0.13 12.3 0.0 2.2 1 1 1 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.6 gi|55379029|ref|YP_136879.1| - 0.077 12.6 0.0 0.24 11.0 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|55379029|ref|YP_136879.1| - 0.09 12.7 0.4 0.47 10.4 0.0 2.3 2 1 0 2 2 2 0 HTH domain HTH_36 PF13730.6 gi|55379029|ref|YP_136879.1| - 0.15 12.1 0.0 0.79 9.7 0.0 2.1 1 1 1 2 2 2 0 Helix-turn-helix domain Pilin_N PF07790.11 gi|55379030|ref|YP_136880.1| - 3.8e-21 75.8 2.5 5e-21 75.4 1.2 1.7 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal GST_N_2 PF13409.6 gi|55379032|ref|YP_136881.1| - 3.5e-22 78.5 0.3 1.4e-20 73.4 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|55379032|ref|YP_136881.1| - 8.7e-13 48.1 0.4 1.6e-12 47.2 0.4 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|55379032|ref|YP_136881.1| - 1.7e-08 34.6 0.0 4.8e-08 33.1 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|55379032|ref|YP_136881.1| - 7.5e-06 26.1 0.0 1.4e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|55379032|ref|YP_136881.1| - 1.2e-05 25.6 0.0 0.15 12.5 0.0 2.5 2 0 0 2 2 2 2 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|55379032|ref|YP_136881.1| - 0.00016 21.4 0.3 0.0003 20.5 0.3 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain SANT_DAMP1_like PF16282.5 gi|55379032|ref|YP_136881.1| - 0.05 13.8 0.1 0.14 12.4 0.1 1.7 1 0 0 1 1 1 0 SANT/Myb-like domain of DAMP1 Ribosomal_L16 PF00252.18 gi|55379031|ref|YP_136882.1| - 1.4e-29 102.8 0.2 1.6e-29 102.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e GcnA_N PF18229.1 gi|55379031|ref|YP_136882.1| - 0.025 14.6 0.0 0.053 13.6 0.0 1.6 1 0 0 1 1 1 0 N-acetyl-beta-D-glucosaminidase N-terminal domain Usp PF00582.26 gi|55379034|ref|YP_136884.1| - 8.2e-21 75.0 0.0 8.9e-21 74.9 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family RimK PF08443.11 gi|55379035|ref|YP_136885.1| - 2.6e-23 82.6 0.0 3.5e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|55379035|ref|YP_136885.1| - 3.4e-10 39.6 0.0 4.7e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|55379035|ref|YP_136885.1| - 1.5e-07 30.9 0.0 0.00061 19.1 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|55379035|ref|YP_136885.1| - 1.5e-07 31.6 0.0 2.3e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain TTL PF03133.15 gi|55379035|ref|YP_136885.1| - 0.00074 18.7 0.0 0.01 15.0 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATP-grasp PF02222.22 gi|55379035|ref|YP_136885.1| - 0.0023 17.5 0.0 0.0034 17.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|55379035|ref|YP_136885.1| - 0.0036 16.9 0.0 0.019 14.5 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus R2K_3 PF14243.6 gi|55379035|ref|YP_136885.1| - 0.026 14.5 0.4 0.035 14.1 0.4 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 CPSase_L_D2 PF02786.17 gi|55379035|ref|YP_136885.1| - 0.034 13.6 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Rbsn PF11464.8 gi|55379035|ref|YP_136885.1| - 0.061 13.1 0.2 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 Rabenosyn Rab binding domain ATP-grasp_4 PF13535.6 gi|55379035|ref|YP_136885.1| - 0.16 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ArsA_HSP20 PF17886.1 gi|55379036|ref|YP_136886.1| - 1.1e-14 53.8 0.0 1.6e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|55379036|ref|YP_136886.1| - 8.5e-11 41.9 0.1 2.4e-09 37.3 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|55379036|ref|YP_136886.1| - 0.00013 22.1 2.5 0.00017 21.7 2.5 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|55379036|ref|YP_136886.1| - 0.046 14.1 0.0 0.063 13.7 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain Frataxin_Cyay PF01491.16 gi|55379036|ref|YP_136886.1| - 0.19 11.8 0.0 5.3 7.2 0.0 2.5 1 1 1 2 2 2 0 Frataxin-like domain Gp_dh_C PF02800.20 gi|55379037|ref|YP_136887.1| - 1e-58 197.4 0.0 1.4e-58 196.9 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|55379037|ref|YP_136887.1| - 1.7e-28 98.9 0.1 3e-28 98.1 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|55379037|ref|YP_136887.1| - 0.006 16.7 0.0 0.018 15.2 0.0 1.9 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus PGK PF00162.19 gi|55379038|ref|YP_136888.1| - 9.3e-100 334.2 0.1 1.1e-99 334.0 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase MT0933_antitox PF14013.6 gi|55379038|ref|YP_136888.1| - 0.13 12.6 1.0 3.4 8.1 0.2 2.9 2 0 0 2 2 2 0 MT0933-like antitoxin protein Lum_binding PF00677.17 gi|55379040|ref|YP_136890.1| - 1.2e-46 156.6 0.4 2e-24 85.4 0.1 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.6 gi|55379041|ref|YP_136891.1| - 2.4e-47 160.9 13.1 2.4e-47 160.9 13.1 1.9 2 1 0 2 2 2 1 PrsW family intramembrane metalloprotease SNO PF01174.19 gi|55379042|ref|YP_136892.1| - 9.4e-53 178.9 0.0 1e-52 178.7 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|55379042|ref|YP_136892.1| - 7.7e-10 38.7 0.0 1.4e-09 37.8 0.0 1.4 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|55379042|ref|YP_136892.1| - 0.00032 20.5 0.2 0.00078 19.3 0.0 1.7 2 0 0 2 2 2 1 DJ-1/PfpI family GATase PF00117.28 gi|55379042|ref|YP_136892.1| - 0.00038 20.3 0.0 0.00085 19.1 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|55379042|ref|YP_136892.1| - 0.00088 19.0 0.0 0.0011 18.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 BPL_N PF09825.9 gi|55379042|ref|YP_136892.1| - 0.055 12.5 0.0 0.23 10.5 0.0 1.9 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal ThiJ_like PF17124.5 gi|55379042|ref|YP_136892.1| - 0.098 12.3 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 ThiJ/PfpI family-like PRA-PH PF01503.17 gi|55379043|ref|YP_136893.1| - 3.7e-17 62.5 2.2 4.1e-17 62.4 2.2 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|55379043|ref|YP_136893.1| - 0.00018 21.6 2.7 0.00018 21.6 2.7 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Response_reg PF00072.24 gi|55379044|ref|YP_136894.1| - 1.3e-22 80.1 0.0 7.3e-22 77.7 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|55379044|ref|YP_136894.1| - 3.4e-19 69.4 0.3 1.2e-17 64.4 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55379044|ref|YP_136894.1| - 5.3e-13 48.8 0.4 5.3e-13 48.8 0.4 3.3 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|55379044|ref|YP_136894.1| - 4.2e-08 33.6 4.3 6.4e-08 33.0 2.3 2.3 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.15 gi|55379044|ref|YP_136894.1| - 6.8e-06 26.3 0.1 3.6e-05 24.0 0.0 2.3 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.25 gi|55379044|ref|YP_136894.1| - 1.8e-05 24.7 0.0 5e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55379044|ref|YP_136894.1| - 2.1e-05 24.7 0.0 0.00014 22.0 0.0 2.4 3 0 0 3 3 3 1 PAS domain PAS_8 PF13188.7 gi|55379044|ref|YP_136894.1| - 2.6e-05 24.1 0.1 0.00013 21.9 0.1 2.2 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|55379044|ref|YP_136894.1| - 0.00083 19.6 1.4 0.0052 17.0 0.1 2.9 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.6 gi|55379044|ref|YP_136894.1| - 0.0036 17.6 0.1 0.017 15.4 0.1 2.2 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.6 gi|55379044|ref|YP_136894.1| - 0.0041 17.0 0.1 0.42 10.4 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|55379044|ref|YP_136894.1| - 0.041 13.8 0.1 0.99 9.3 0.0 3.0 2 1 0 2 2 2 0 GHKL domain GramPos_pilinD1 PF16555.5 gi|55379045|ref|YP_136895.1| - 0.00068 19.8 0.3 0.00075 19.7 0.3 1.1 1 0 0 1 1 1 1 Gram-positive pilin subunit D1, N-terminal domain ASCH PF04266.14 gi|55379045|ref|YP_136895.1| - 0.017 15.7 0.1 0.031 14.8 0.0 1.5 2 0 0 2 2 2 0 ASCH domain CAML PF14963.6 gi|55379045|ref|YP_136895.1| - 0.13 12.4 0.1 0.16 12.0 0.1 1.1 1 0 0 1 1 1 0 Calcium signal-modulating cyclophilin ligand NOG1_N PF17835.1 gi|55379046|ref|YP_136896.1| - 4.1e-36 124.4 0.0 8.9e-36 123.3 0.0 1.6 1 1 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|55379046|ref|YP_136896.1| - 8.7e-23 79.9 0.0 1.8e-22 78.9 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|55379046|ref|YP_136896.1| - 5e-20 71.7 0.0 9.9e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|55379046|ref|YP_136896.1| - 4.3e-11 42.6 0.0 7.8e-11 41.7 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|55379046|ref|YP_136896.1| - 2.1e-05 24.6 0.2 0.37 10.8 0.0 3.1 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|55379046|ref|YP_136896.1| - 0.0095 15.9 0.0 0.11 12.4 0.0 2.5 2 1 0 2 2 2 1 RsgA GTPase Ras PF00071.22 gi|55379046|ref|YP_136896.1| - 0.016 14.8 0.0 0.07 12.7 0.0 2.0 1 1 0 1 1 1 0 Ras family AAA_16 PF13191.6 gi|55379046|ref|YP_136896.1| - 0.018 15.5 0.0 0.05 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.16 gi|55379046|ref|YP_136896.1| - 0.036 13.4 0.0 0.067 12.5 0.0 1.5 1 1 0 1 1 1 0 AIG1 family SIMPL PF04402.14 gi|55379047|ref|YP_136897.1| - 4.8e-34 118.6 17.1 5.6e-34 118.4 17.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) FlgT_N PF16548.5 gi|55379047|ref|YP_136897.1| - 0.2 12.3 5.7 2 9.0 0.9 2.5 2 0 0 2 2 2 0 Flagellar assembly protein T, N-terminal domain DUF389 PF04087.14 gi|55379048|ref|YP_136898.1| - 2.9e-35 121.4 17.7 7.8e-35 120.0 17.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF389) HPP PF04982.13 gi|55379048|ref|YP_136898.1| - 0.44 10.8 19.4 4.6 7.5 10.3 2.4 1 1 1 2 2 2 0 HPP family MMR_HSR1 PF01926.23 gi|55379049|ref|YP_136899.1| - 2.1e-17 63.3 0.0 3.6e-17 62.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|55379049|ref|YP_136899.1| - 1.2e-12 47.6 0.0 1.9e-11 43.8 0.0 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|55379049|ref|YP_136899.1| - 4.9e-07 29.5 0.0 0.00023 20.7 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|55379049|ref|YP_136899.1| - 1.2e-05 25.3 0.1 0.027 14.4 0.1 2.4 2 1 0 2 2 2 2 RsgA GTPase Roc PF08477.13 gi|55379049|ref|YP_136899.1| - 0.0016 18.7 0.0 0.003 17.8 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 gi|55379049|ref|YP_136899.1| - 0.0049 16.2 0.0 0.011 15.1 0.0 1.5 1 1 1 2 2 2 1 AIG1 family Ras PF00071.22 gi|55379049|ref|YP_136899.1| - 0.011 15.4 0.0 0.029 13.9 0.0 1.7 2 0 0 2 2 2 0 Ras family MeaB PF03308.16 gi|55379049|ref|YP_136899.1| - 0.022 13.8 0.1 3.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB TIP49 PF06068.13 gi|55379049|ref|YP_136899.1| - 0.024 13.8 0.3 0.042 13.0 0.3 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain ABC_tran PF00005.27 gi|55379049|ref|YP_136899.1| - 0.036 14.6 0.1 0.049 14.1 0.1 1.5 1 1 0 1 1 1 0 ABC transporter PduV-EutP PF10662.9 gi|55379049|ref|YP_136899.1| - 0.037 13.8 0.0 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.23 gi|55379049|ref|YP_136899.1| - 0.043 13.9 0.1 0.11 12.5 0.0 1.7 1 1 0 1 1 1 0 Dynamin family AAA_22 PF13401.6 gi|55379049|ref|YP_136899.1| - 0.044 14.1 0.1 0.42 10.9 0.1 2.5 1 1 1 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|55379049|ref|YP_136899.1| - 0.082 12.7 0.1 0.17 11.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|55379049|ref|YP_136899.1| - 0.09 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|55379049|ref|YP_136899.1| - 0.14 12.7 0.0 0.25 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain Metallophos PF00149.28 gi|55379051|ref|YP_136901.1| - 1.3e-08 35.6 0.7 2.2e-08 34.9 0.7 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Dockerin_1 PF00404.18 gi|55379051|ref|YP_136901.1| - 0.12 12.6 15.7 0.27 11.4 15.7 1.6 1 0 0 1 1 1 0 Dockerin type I domain TAT_signal PF10518.9 gi|55379051|ref|YP_136901.1| - 0.35 10.8 6.1 0.68 9.9 6.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence VCBS PF13517.6 gi|55379051|ref|YP_136901.1| - 0.79 10.4 19.8 0.68 10.6 3.8 3.5 3 0 0 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Cohesin PF00963.18 gi|55379052|ref|YP_136902.1| - 3.8e-11 43.4 0.9 3.8e-11 43.4 0.9 3.0 2 2 0 2 2 2 1 Cohesin domain Phage_int_SAM_1 PF02899.17 gi|55379053|ref|YP_136903.1| - 1.4e-07 31.7 0.8 6.9e-07 29.5 0.3 2.3 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|55379053|ref|YP_136903.1| - 2.4e-07 30.7 0.0 1e-06 28.6 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|55379053|ref|YP_136903.1| - 0.017 15.4 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|55379053|ref|YP_136903.1| - 0.092 13.2 0.0 0.63 10.5 0.0 1.9 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Mrr_N PF14338.6 gi|55379054|ref|YP_136904.1| - 2.7e-05 24.2 0.1 5e-05 23.3 0.1 1.5 1 1 0 1 1 1 1 Mrr N-terminal domain AbiEi_4 PF13338.6 gi|55379054|ref|YP_136904.1| - 8.3e-05 22.7 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_27 PF13463.6 gi|55379054|ref|YP_136904.1| - 0.00013 22.4 0.1 0.00017 22.0 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|55379054|ref|YP_136904.1| - 0.00013 21.9 0.1 0.00028 20.9 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF2161 PF09929.9 gi|55379054|ref|YP_136904.1| - 0.007 16.5 0.0 0.0087 16.2 0.0 1.2 1 0 0 1 1 1 1 Putative PD-(D/E)XK phosphodiesterase (DUF2161) HTH_45 PF14947.6 gi|55379054|ref|YP_136904.1| - 0.0082 16.1 0.0 0.014 15.4 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.6 gi|55379054|ref|YP_136904.1| - 0.009 15.6 0.1 0.057 13.0 0.1 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.16 gi|55379054|ref|YP_136904.1| - 0.0096 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain Ribosomal_S19e PF01090.19 gi|55379054|ref|YP_136904.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.6 1 1 1 2 2 2 0 Ribosomal protein S19e AAA_22 PF13401.6 gi|55379056|ref|YP_136906.1| - 7.5e-10 39.2 0.1 2.6e-09 37.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|55379056|ref|YP_136906.1| - 4.3e-09 37.0 7.2 1.4e-07 32.0 7.2 3.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|55379056|ref|YP_136906.1| - 3.9e-06 27.3 0.0 1.7e-05 25.2 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|55379056|ref|YP_136906.1| - 0.0013 18.7 0.1 0.041 13.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|55379056|ref|YP_136906.1| - 0.0027 18.2 0.1 0.02 15.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|55379056|ref|YP_136906.1| - 0.003 17.1 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|55379056|ref|YP_136906.1| - 0.0055 16.9 2.2 0.032 14.4 0.2 2.8 2 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|55379056|ref|YP_136906.1| - 0.013 15.8 0.1 0.037 14.3 0.1 1.7 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|55379056|ref|YP_136906.1| - 0.014 15.2 0.1 3 7.6 0.0 2.6 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|55379056|ref|YP_136906.1| - 0.033 13.9 0.0 0.095 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|55379056|ref|YP_136906.1| - 0.036 14.0 0.0 0.08 12.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|55379056|ref|YP_136906.1| - 0.037 13.4 0.1 0.076 12.4 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|55379056|ref|YP_136906.1| - 0.053 13.4 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|55379056|ref|YP_136906.1| - 0.055 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|55379056|ref|YP_136906.1| - 0.06 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|55379056|ref|YP_136906.1| - 0.07 12.9 0.2 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|55379056|ref|YP_136906.1| - 0.077 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase GvpD PF07088.11 gi|55379056|ref|YP_136906.1| - 0.097 11.3 0.4 0.35 9.4 0.0 1.8 2 0 0 2 2 2 0 GvpD gas vesicle protein RNA_helicase PF00910.22 gi|55379056|ref|YP_136906.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase MMR_HSR1 PF01926.23 gi|55379056|ref|YP_136906.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|55379056|ref|YP_136906.1| - 0.15 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF1887 PF09002.11 gi|55379057|ref|YP_136907.1| - 0.0002 20.2 0.0 0.00028 19.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|55379057|ref|YP_136907.1| - 0.00062 18.7 0.1 0.00096 18.0 0.1 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF4364 PF14277.6 gi|55379057|ref|YP_136907.1| - 0.019 14.7 0.6 0.075 12.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) Fe-ADH_2 PF13685.6 gi|55379057|ref|YP_136907.1| - 0.095 12.4 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase HU-CCDC81_euk_1 PF14908.6 gi|55379057|ref|YP_136907.1| - 0.15 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 CCDC81 eukaryotic HU domain 1 HTH_24 PF13412.6 gi|55379058|ref|YP_136908.1| - 0.0062 16.1 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding EcoR124_C PF12008.8 gi|55379058|ref|YP_136908.1| - 0.019 14.6 0.3 3.1 7.4 0.1 2.0 2 0 0 2 2 2 0 Type I restriction and modification enzyme - subunit R C terminal DUF4185 PF13810.6 gi|55379058|ref|YP_136908.1| - 0.048 12.9 0.0 0.056 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4185) AAA_lid_9 PF17871.1 gi|55379059|ref|YP_136909.1| - 0.04 13.9 0.2 0.054 13.4 0.2 1.1 1 0 0 1 1 1 0 AAA lid domain EVE PF01878.18 gi|55379060|ref|YP_136910.1| - 6.9e-05 22.9 0.3 0.024 14.6 0.0 3.0 3 0 0 3 3 3 2 EVE domain RE_AspBHI_N PF18062.1 gi|55379060|ref|YP_136910.1| - 0.0019 17.8 0.3 0.0038 16.8 0.3 1.4 1 0 0 1 1 1 1 Restriction endonuclease AspBHI N-terminal AAA_5 PF07728.14 gi|55379062|ref|YP_136912.1| - 8.5e-16 58.2 0.0 1.4e-15 57.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|55379062|ref|YP_136912.1| - 6.3e-06 26.5 0.0 1.9e-05 24.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379062|ref|YP_136912.1| - 9.5e-06 26.1 0.0 2.8e-05 24.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|55379062|ref|YP_136912.1| - 0.0088 16.0 0.0 0.03 14.3 0.0 1.8 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_16 PF13191.6 gi|55379062|ref|YP_136912.1| - 0.019 15.3 0.0 0.1 13.0 0.0 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|55379062|ref|YP_136912.1| - 0.021 14.6 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|55379062|ref|YP_136912.1| - 0.022 14.5 0.0 0.94 9.2 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|55379062|ref|YP_136912.1| - 0.024 15.0 0.0 0.046 14.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|55379062|ref|YP_136912.1| - 0.064 13.6 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|55379062|ref|YP_136912.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein McrBC PF10117.9 gi|55379063|ref|YP_136913.1| - 6.8e-21 74.7 0.0 8.2e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component DDE_Tnp_1 PF01609.21 gi|55379064|ref|YP_136914.1| - 7.8e-31 107.4 0.3 1e-30 107.0 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|55379064|ref|YP_136914.1| - 0.011 14.0 0.1 0.024 12.9 0.0 1.5 1 1 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_2 PF04693.12 gi|55379064|ref|YP_136914.1| - 0.091 12.0 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 McrBC PF10117.9 gi|55379065|ref|YP_136915.1| - 1.2e-08 34.5 0.0 1.4e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 McrBC 5-methylcytosine restriction system component Alpha_E1_glycop PF01589.16 gi|55379065|ref|YP_136915.1| - 0.16 10.6 0.1 0.35 9.5 0.0 1.5 1 1 1 2 2 2 0 Alphavirus E1 glycoprotein DUF4140 PF13600.6 gi|55379069|ref|YP_136919.1| - 0.91 10.0 5.0 1 9.8 0.9 2.7 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF4407 PF14362.6 gi|55379069|ref|YP_136919.1| - 8 5.7 10.9 2.5 7.4 4.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4407) TrbC PF04956.13 gi|55379070|ref|YP_136920.1| - 0.16 12.2 1.7 13 6.0 0.1 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF4381 PF14316.6 gi|55379071|ref|YP_136921.1| - 0.066 13.4 1.8 0.14 12.4 1.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Tmemb_14 PF03647.13 gi|55379071|ref|YP_136921.1| - 0.11 13.2 0.0 0.17 12.7 0.0 1.2 1 0 0 1 1 1 0 Transmembrane proteins 14C CoatB PF10389.9 gi|55379071|ref|YP_136921.1| - 4.7 7.1 6.2 1 9.2 2.1 2.0 2 0 0 2 2 2 0 Bacteriophage coat protein B HTH_15 PF12324.8 gi|55379074|ref|YP_136924.1| - 0.0022 17.9 0.0 0.0069 16.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase MarR_2 PF12802.7 gi|55379074|ref|YP_136924.1| - 0.0059 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|55379074|ref|YP_136924.1| - 0.09 12.6 0.2 1.6 8.7 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain Ribosomal_S10 PF00338.22 gi|55379075|ref|YP_136925.1| - 1.6e-25 89.2 0.0 1.8e-25 89.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|55379076|ref|YP_136926.1| - 2.7e-58 196.7 0.1 3.3e-58 196.5 0.1 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|55379076|ref|YP_136926.1| - 3.9e-37 127.0 0.0 1e-36 125.7 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|55379076|ref|YP_136926.1| - 4.3e-16 59.1 2.8 1.9e-15 57.0 0.7 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|55379076|ref|YP_136926.1| - 3.2e-07 30.4 0.2 2.6e-06 27.5 0.2 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|55379076|ref|YP_136926.1| - 0.00026 20.9 0.7 0.025 14.5 0.1 2.4 1 1 1 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|55379076|ref|YP_136926.1| - 0.0053 16.1 0.0 0.073 12.4 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region GTP_EFTU_D4 PF14578.6 gi|55379076|ref|YP_136926.1| - 0.0074 16.2 0.3 0.021 14.7 0.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 SRPRB PF09439.10 gi|55379076|ref|YP_136926.1| - 0.0088 15.5 0.0 0.48 9.8 0.0 2.4 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|55379076|ref|YP_136926.1| - 0.012 15.6 0.0 5.3 7.1 0.0 2.5 1 1 1 2 2 2 0 Dynamin family FeoB_N PF02421.18 gi|55379076|ref|YP_136926.1| - 0.024 14.2 0.1 0.49 9.9 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B ATP_bind_1 PF03029.17 gi|55379076|ref|YP_136926.1| - 0.099 12.4 0.4 1 9.1 0.2 2.3 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Septin PF00735.18 gi|55379076|ref|YP_136926.1| - 0.17 11.2 0.0 0.44 9.8 0.0 1.5 1 1 0 1 1 1 0 Septin DUF4870 PF09685.10 gi|55379077|ref|YP_136927.1| - 6.3e-05 23.0 5.9 0.0001 22.3 6.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4870) YqzE PF14038.6 gi|55379077|ref|YP_136927.1| - 0.61 10.1 2.4 10 6.2 0.1 2.4 2 0 0 2 2 2 0 YqzE-like protein Homoserine_dh PF00742.19 gi|55379078|ref|YP_136928.1| - 7.1e-49 166.0 0.2 1.1e-48 165.5 0.2 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|55379078|ref|YP_136928.1| - 7.9e-08 32.3 0.4 2.2e-07 30.9 0.2 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|55379078|ref|YP_136928.1| - 1e-05 26.2 0.3 2.5e-05 24.9 0.3 1.7 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|55379078|ref|YP_136928.1| - 0.0025 17.7 0.7 0.0065 16.4 0.6 1.7 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|55379078|ref|YP_136928.1| - 0.0091 16.8 0.0 0.019 15.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold PglD_N PF17836.1 gi|55379078|ref|YP_136928.1| - 0.021 15.4 0.1 0.067 13.8 0.1 1.9 1 0 0 1 1 1 0 PglD N-terminal domain Pyr_redox PF00070.27 gi|55379078|ref|YP_136928.1| - 0.038 14.6 0.2 0.091 13.3 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|55379078|ref|YP_136928.1| - 0.055 13.7 0.1 0.27 11.5 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|55379078|ref|YP_136928.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|55379078|ref|YP_136928.1| - 0.073 13.3 0.4 0.16 12.3 0.4 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_8 PF13450.6 gi|55379078|ref|YP_136928.1| - 0.081 13.2 0.5 0.25 11.6 0.5 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_Gly3P_dh_N PF01210.23 gi|55379078|ref|YP_136928.1| - 0.094 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|55379078|ref|YP_136928.1| - 0.096 12.0 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACT PF01842.25 gi|55379079|ref|YP_136929.1| - 0.0012 18.6 0.8 0.12 12.1 0.0 2.7 3 1 0 3 3 3 2 ACT domain Sigma70_r1_1 PF03979.14 gi|55379079|ref|YP_136929.1| - 0.11 12.5 0.1 0.34 11.0 0.0 1.8 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 HTH_31 PF13560.6 gi|55379081|ref|YP_136931.1| - 5.3 7.5 8.9 0.88 10.0 0.4 3.5 4 0 0 4 4 4 0 Helix-turn-helix domain GTP_EFTU PF00009.27 gi|55379082|ref|YP_136932.1| - 1.6e-64 217.0 0.5 2.7e-64 216.3 0.5 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|55379082|ref|YP_136932.1| - 2.5e-24 85.1 0.0 3.4e-23 81.5 0.0 2.7 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|55379082|ref|YP_136932.1| - 1.1e-22 80.0 0.0 3.3e-22 78.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|55379082|ref|YP_136932.1| - 1.3e-21 76.5 0.3 1.3e-21 76.5 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|55379082|ref|YP_136932.1| - 7.8e-17 61.4 1.9 6.3e-16 58.5 1.1 2.8 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|55379082|ref|YP_136932.1| - 3.3e-05 23.9 0.6 9.3e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|55379082|ref|YP_136932.1| - 0.065 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|55379082|ref|YP_136932.1| - 0.081 12.4 0.2 0.22 10.9 0.2 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|55379082|ref|YP_136932.1| - 0.17 11.5 0.0 0.37 10.4 0.0 1.5 1 0 0 1 1 1 0 Ras family Cys_Met_Meta_PP PF01053.20 gi|55379083|ref|YP_136933.1| - 1.2e-139 465.1 0.0 1.4e-139 464.9 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|55379083|ref|YP_136933.1| - 7.6e-11 41.9 0.9 1.3e-10 41.1 0.7 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|55379083|ref|YP_136933.1| - 4.7e-05 22.7 0.0 7.2e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|55379083|ref|YP_136933.1| - 0.0026 16.8 0.0 0.0044 16.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|55379083|ref|YP_136933.1| - 0.0073 15.6 0.1 0.029 13.7 0.1 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|55379083|ref|YP_136933.1| - 0.014 13.9 0.0 0.069 11.7 0.0 1.9 1 1 0 1 1 1 0 Methionine gamma-lyase PAS_3 PF08447.12 gi|55379085|ref|YP_136935.1| - 2.2e-50 168.9 0.5 2e-12 47.2 0.1 5.0 4 0 0 4 4 4 4 PAS fold PAS_4 PF08448.10 gi|55379085|ref|YP_136935.1| - 1.8e-34 118.3 8.5 3.2e-15 56.3 0.1 4.7 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|55379085|ref|YP_136935.1| - 4.7e-23 81.4 1.3 2.3e-12 47.1 0.0 5.0 6 0 0 6 6 4 3 PAS domain Response_reg PF00072.24 gi|55379085|ref|YP_136935.1| - 2.2e-22 79.3 0.0 7.1e-22 77.7 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|55379085|ref|YP_136935.1| - 2.7e-20 72.4 0.7 1.2e-08 34.9 0.0 4.6 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|55379085|ref|YP_136935.1| - 1.3e-14 54.7 1.1 4e-14 53.1 0.1 2.4 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55379085|ref|YP_136935.1| - 5.8e-10 39.1 1.3 5.8e-10 39.1 1.3 3.2 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|55379085|ref|YP_136935.1| - 5.2e-05 23.6 0.0 0.00016 22.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|55379085|ref|YP_136935.1| - 0.00011 22.5 0.0 0.0014 18.9 0.0 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_8 PF13188.7 gi|55379085|ref|YP_136935.1| - 0.00017 21.5 1.8 0.97 9.5 0.0 4.5 4 0 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.6 gi|55379085|ref|YP_136935.1| - 0.0003 20.7 0.2 0.0011 18.9 0.2 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|55379085|ref|YP_136935.1| - 0.04 13.7 0.1 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Fes1 PF08609.10 gi|55379085|ref|YP_136935.1| - 3.9 8.4 8.2 0.68 10.8 0.4 3.8 3 2 0 3 3 3 0 Nucleotide exchange factor Fes1 CbiQ PF02361.16 gi|55379086|ref|YP_136936.1| - 3.8e-17 62.6 5.8 6.3e-17 61.9 5.8 1.3 1 1 0 1 1 1 1 Cobalt transport protein DUF1275 PF06912.11 gi|55379086|ref|YP_136936.1| - 0.14 12.1 5.6 0.21 11.5 5.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) ABC_tran PF00005.27 gi|55379087|ref|YP_136937.1| - 4.4e-30 105.0 0.0 5.6e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55379087|ref|YP_136937.1| - 1.8e-08 34.6 0.0 0.0034 17.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|55379087|ref|YP_136937.1| - 5.3e-07 30.2 1.0 8.5e-07 29.5 1.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|55379087|ref|YP_136937.1| - 1.5e-06 27.9 0.0 3.5e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55379087|ref|YP_136937.1| - 2e-06 27.4 0.1 4.3e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|55379087|ref|YP_136937.1| - 8.3e-05 22.6 0.0 0.00018 21.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|55379087|ref|YP_136937.1| - 0.00016 22.2 0.0 0.00019 22.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|55379087|ref|YP_136937.1| - 0.0013 19.3 0.1 0.069 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|55379087|ref|YP_136937.1| - 0.0015 18.8 0.0 0.0022 18.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|55379087|ref|YP_136937.1| - 0.0017 18.5 0.2 0.0046 17.1 0.2 1.7 2 1 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|55379087|ref|YP_136937.1| - 0.0017 18.1 0.0 0.0053 16.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|55379087|ref|YP_136937.1| - 0.0026 17.5 0.0 0.0059 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|55379087|ref|YP_136937.1| - 0.0038 16.6 0.0 0.0053 16.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|55379087|ref|YP_136937.1| - 0.0048 17.3 0.0 0.0093 16.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|55379087|ref|YP_136937.1| - 0.0052 16.7 0.0 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.6 gi|55379087|ref|YP_136937.1| - 0.0065 16.1 0.9 0.031 13.8 0.9 2.3 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|55379087|ref|YP_136937.1| - 0.0073 16.0 0.7 0.0099 15.5 0.1 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|55379087|ref|YP_136937.1| - 0.0089 15.8 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|55379087|ref|YP_136937.1| - 0.013 15.8 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|55379087|ref|YP_136937.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|55379087|ref|YP_136937.1| - 0.023 14.0 0.1 0.055 12.7 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_7 PF12775.7 gi|55379087|ref|YP_136937.1| - 0.025 14.1 0.0 0.037 13.5 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_27 PF13514.6 gi|55379087|ref|YP_136937.1| - 0.068 12.8 0.0 0.2 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|55379087|ref|YP_136937.1| - 0.08 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Polyoma_lg_T_C PF06431.11 gi|55379087|ref|YP_136937.1| - 0.081 11.8 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus AAA_PrkA PF08298.11 gi|55379087|ref|YP_136937.1| - 0.085 11.8 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain RsgA_GTPase PF03193.16 gi|55379087|ref|YP_136937.1| - 0.099 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|55379087|ref|YP_136937.1| - 0.1 12.8 0.1 1.1 9.5 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|55379087|ref|YP_136937.1| - 0.11 11.2 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|55379087|ref|YP_136937.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.6 gi|55379087|ref|YP_136937.1| - 0.15 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|55379087|ref|YP_136937.1| - 0.15 11.9 0.1 0.33 10.9 0.1 1.6 2 0 0 2 2 2 0 NTPase PduV-EutP PF10662.9 gi|55379087|ref|YP_136937.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DLIC PF05783.11 gi|55379087|ref|YP_136937.1| - 0.18 10.6 0.0 0.24 10.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_14 PF13173.6 gi|55379087|ref|YP_136937.1| - 0.23 11.5 0.0 0.53 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain BioY PF02632.14 gi|55379088|ref|YP_136938.1| - 8.4e-28 97.1 23.5 8.4e-28 97.1 23.5 1.5 2 0 0 2 2 2 1 BioY family GSDH PF07995.11 gi|55379089|ref|YP_136939.1| - 1.5e-87 294.0 0.1 1.9e-87 293.7 0.1 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Ribosomal_S7 PF00177.21 gi|55379090|ref|YP_136940.1| - 1.7e-38 131.6 2.0 2.3e-38 131.2 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e PBECR3 PF18812.1 gi|55379090|ref|YP_136940.1| - 0.035 14.0 0.1 0.051 13.5 0.1 1.3 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 Ribosom_S12_S23 PF00164.25 gi|55379091|ref|YP_136941.1| - 3.3e-50 168.5 0.4 4.1e-50 168.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MCPsignal PF00015.21 gi|55379092|ref|YP_136942.1| - 5.1e-45 153.4 61.4 1.5e-43 148.6 21.4 4.8 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|55379092|ref|YP_136942.1| - 6e-13 49.0 15.9 6.4e-07 29.7 0.0 6.2 5 2 2 7 7 6 2 HAMP domain DUF948 PF06103.11 gi|55379092|ref|YP_136942.1| - 5.7e-07 29.7 42.2 0.00053 20.2 0.6 7.8 4 1 2 7 7 7 3 Bacterial protein of unknown function (DUF948) dCache_1 PF02743.18 gi|55379092|ref|YP_136942.1| - 3.6e-06 26.9 1.7 3.6e-06 26.9 1.7 4.4 3 2 1 4 4 3 1 Cache domain Laminin_II PF06009.12 gi|55379092|ref|YP_136942.1| - 2.5e-05 24.3 29.1 0.065 13.3 0.4 5.6 3 2 2 5 5 5 3 Laminin Domain II BLOC1_2 PF10046.9 gi|55379092|ref|YP_136942.1| - 0.00046 20.4 25.3 0.9 9.9 0.5 6.0 3 2 2 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 DHC_N1 PF08385.12 gi|55379092|ref|YP_136942.1| - 0.0023 16.7 0.0 0.075 11.7 0.0 2.2 1 1 1 2 2 2 1 Dynein heavy chain, N-terminal region 1 Spc7 PF08317.11 gi|55379092|ref|YP_136942.1| - 0.0087 15.0 22.0 0.14 11.0 2.3 3.6 1 1 1 3 3 3 3 Spc7 kinetochore protein LXG PF04740.12 gi|55379092|ref|YP_136942.1| - 0.014 15.1 0.8 0.014 15.1 0.8 5.1 1 1 3 4 4 4 0 LXG domain of WXG superfamily CENP-F_leu_zip PF10473.9 gi|55379092|ref|YP_136942.1| - 0.028 14.5 0.7 0.028 14.5 0.7 5.0 2 1 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.11 gi|55379092|ref|YP_136942.1| - 0.036 12.0 12.2 0.28 9.1 2.9 2.5 1 1 1 2 2 2 0 Prominin COG2 PF06148.11 gi|55379092|ref|YP_136942.1| - 0.11 12.6 21.8 0.32 11.1 0.8 5.9 1 1 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 RecG_N PF17190.4 gi|55379092|ref|YP_136942.1| - 0.21 12.4 3.6 9.5 7.0 0.3 4.2 4 0 0 4 4 4 0 RecG N-terminal helical domain DUF1664 PF07889.12 gi|55379092|ref|YP_136942.1| - 0.25 11.4 31.6 0.46 10.5 1.1 6.2 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.10 gi|55379092|ref|YP_136942.1| - 0.27 11.4 16.6 1.1 9.4 0.1 4.7 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family CALCOCO1 PF07888.11 gi|55379092|ref|YP_136942.1| - 0.34 9.7 23.0 1.3 7.8 1.1 2.7 3 0 0 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like Seryl_tRNA_N PF02403.22 gi|55379092|ref|YP_136942.1| - 0.41 10.9 27.4 0.18 12.1 3.9 5.3 3 1 1 5 5 5 0 Seryl-tRNA synthetase N-terminal domain SKA1 PF07160.12 gi|55379092|ref|YP_136942.1| - 0.68 9.7 8.1 4.8 7.0 0.1 3.4 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 1 Tup_N PF08581.10 gi|55379092|ref|YP_136942.1| - 0.72 10.2 7.7 8.7 6.7 1.0 4.0 3 0 0 3 3 3 0 Tup N-terminal Med28 PF11594.8 gi|55379092|ref|YP_136942.1| - 0.95 9.5 5.8 3.6 7.7 0.3 3.4 2 1 1 3 3 3 0 Mediator complex subunit 28 KxDL PF10241.9 gi|55379092|ref|YP_136942.1| - 2.6 8.4 4.8 12 6.3 0.1 4.1 3 2 2 5 5 5 0 Uncharacterized conserved protein Fzo_mitofusin PF04799.13 gi|55379092|ref|YP_136942.1| - 2.7 7.5 10.3 21 4.6 0.1 4.7 3 2 2 5 5 5 0 fzo-like conserved region TBCC_N PF16752.5 gi|55379092|ref|YP_136942.1| - 3.4 8.2 21.9 6.1 7.3 0.6 4.9 4 2 1 5 5 4 0 Tubulin-specific chaperone C N-terminal domain DUF2203 PF09969.9 gi|55379092|ref|YP_136942.1| - 3.4 8.4 26.2 2.9 8.6 1.2 5.5 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) APG17 PF04108.12 gi|55379092|ref|YP_136942.1| - 4.5 6.3 33.2 0.54 9.3 6.0 3.6 1 1 2 3 3 3 0 Autophagy protein Apg17 Sec34 PF04136.15 gi|55379092|ref|YP_136942.1| - 5.6 6.8 17.1 18 5.2 0.0 5.3 3 2 3 6 6 5 0 Sec34-like family Hrs_helical PF12210.8 gi|55379092|ref|YP_136942.1| - 5.8 7.5 9.9 44 4.7 0.1 4.4 5 0 0 5 5 3 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DASH_Dam1 PF08653.10 gi|55379092|ref|YP_136942.1| - 6.8 6.6 8.5 46 3.9 0.0 5.1 7 0 0 7 7 6 0 DASH complex subunit Dam1 Tweety PF04906.13 gi|55379092|ref|YP_136942.1| - 8.5 4.9 10.7 8.1 5.0 1.1 3.3 2 1 1 3 3 3 0 Tweety Cauli_AT PF03233.13 gi|55379092|ref|YP_136942.1| - 9.8 6.1 10.8 6.2 6.7 0.2 4.1 2 2 2 4 4 4 0 Aphid transmission protein KH_2 PF07650.17 gi|55379093|ref|YP_136943.1| - 9.6e-16 57.4 0.2 4.2e-09 36.1 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|55379093|ref|YP_136943.1| - 2e-10 40.4 0.1 2.4e-07 30.5 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|55379093|ref|YP_136943.1| - 2.5e-10 40.3 0.1 4.4e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|55379093|ref|YP_136943.1| - 0.00022 21.0 0.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 2 KH domain GGDEF_2 PF17853.1 gi|55379093|ref|YP_136943.1| - 0.043 14.1 2.7 0.15 12.3 0.3 2.0 1 1 1 2 2 2 0 GGDEF-like domain RNA_pol_Rpb1_5 PF04998.17 gi|55379094|ref|YP_136944.1| - 1.7e-53 181.8 0.1 2.4e-53 181.3 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|55379094|ref|YP_136944.1| - 0.023 14.6 0.0 1.4 9.0 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix containing domain RNA_pol_Rpb1_1 PF04997.12 gi|55379095|ref|YP_136945.1| - 6.8e-113 377.1 0.0 1.1e-112 376.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|55379095|ref|YP_136945.1| - 3.3e-68 229.1 0.3 5.5e-68 228.4 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|55379095|ref|YP_136945.1| - 4.2e-33 113.5 0.0 1e-32 112.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|55379095|ref|YP_136945.1| - 6.4e-26 91.4 0.0 1.3e-25 90.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.18 gi|55379095|ref|YP_136945.1| - 4e-25 88.6 0.0 6.9e-25 87.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.22 gi|55379095|ref|YP_136945.1| - 0.00051 20.0 0.1 0.0014 18.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix RNA_pol_Rpb2_6 PF00562.28 gi|55379096|ref|YP_136946.1| - 5.1e-128 427.5 0.2 1.8e-127 425.7 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|55379096|ref|YP_136946.1| - 9.7e-31 106.0 0.3 1.7e-30 105.3 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|55379096|ref|YP_136946.1| - 1.8e-21 76.2 0.3 3.2e-21 75.4 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|55379096|ref|YP_136946.1| - 8e-07 29.5 5.4 4.1e-06 27.3 5.4 2.3 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|55379096|ref|YP_136946.1| - 0.024 14.5 1.3 0.05 13.5 1.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|55379096|ref|YP_136946.1| - 0.045 13.9 0.2 0.091 12.9 0.2 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|55379096|ref|YP_136946.1| - 0.13 12.4 0.6 0.23 11.5 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|55379096|ref|YP_136946.1| - 1.2 8.9 2.9 1 9.1 1.3 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_pol_Rpb2_1 PF04563.15 gi|55379097|ref|YP_136947.1| - 2e-49 167.9 0.1 2.4e-49 167.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|55379097|ref|YP_136947.1| - 2.4e-27 95.8 0.1 4.2e-27 95.0 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|55379097|ref|YP_136947.1| - 1.6e-24 85.9 0.0 3.1e-24 84.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|55379098|ref|YP_136948.1| - 1.5e-23 82.4 0.8 1.8e-23 82.2 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain SKA2 PF16740.5 gi|55379099|ref|YP_136949.1| - 0.00059 19.6 0.1 0.44 10.3 0.2 2.4 2 1 1 3 3 3 2 Spindle and kinetochore-associated protein 2 Spectrin PF00435.21 gi|55379099|ref|YP_136949.1| - 0.012 16.1 0.7 0.1 13.1 0.2 2.2 2 0 0 2 2 2 0 Spectrin repeat LRRFIP PF09738.9 gi|55379099|ref|YP_136949.1| - 0.016 14.7 1.7 0.096 12.1 0.5 2.0 2 0 0 2 2 2 0 LRRFIP family DUF4140 PF13600.6 gi|55379099|ref|YP_136949.1| - 0.037 14.4 2.2 0.12 12.8 0.4 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) PmrD PF11183.8 gi|55379099|ref|YP_136949.1| - 0.066 13.3 0.0 9.5 6.4 0.0 2.9 2 1 0 3 3 3 0 Polymyxin resistance protein PmrD Phage_GP20 PF06810.11 gi|55379099|ref|YP_136949.1| - 0.1 12.4 0.2 5.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 HEPN PF05168.14 gi|55379099|ref|YP_136949.1| - 0.12 12.5 0.6 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 HEPN domain Syntaxin-6_N PF09177.11 gi|55379099|ref|YP_136949.1| - 0.29 11.7 2.8 0.89 10.1 0.5 2.5 2 1 1 3 3 3 0 Syntaxin 6, N-terminal DivIC PF04977.15 gi|55379099|ref|YP_136949.1| - 0.48 10.2 3.3 0.91 9.3 0.8 2.2 2 0 0 2 2 2 0 Septum formation initiator PP-binding_2 PF14573.6 gi|55379099|ref|YP_136949.1| - 0.5 10.6 2.8 1.2 9.4 0.7 2.5 2 1 0 2 2 2 0 Acyl-carrier HalX PF08663.10 gi|55379099|ref|YP_136949.1| - 0.95 9.8 19.1 0.29 11.5 6.2 3.2 3 0 0 3 3 3 0 HalX domain HTH_24 PF13412.6 gi|55379100|ref|YP_136950.1| - 6.6e-07 28.8 0.1 1.2e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|55379100|ref|YP_136950.1| - 0.00024 20.9 0.0 0.00033 20.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|55379100|ref|YP_136950.1| - 0.0044 16.9 0.0 0.0074 16.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55379100|ref|YP_136950.1| - 0.0079 16.1 0.0 0.017 15.0 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|55379100|ref|YP_136950.1| - 0.0092 16.0 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|55379100|ref|YP_136950.1| - 0.0096 15.8 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_12 PF08461.10 gi|55379100|ref|YP_136950.1| - 0.022 14.7 0.3 0.073 13.0 0.1 1.9 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain GntR PF00392.21 gi|55379100|ref|YP_136950.1| - 0.023 14.3 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|55379100|ref|YP_136950.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|55379100|ref|YP_136950.1| - 0.064 13.6 0.0 0.19 12.1 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator HTH_IclR PF09339.10 gi|55379100|ref|YP_136950.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Metallophos_2 PF12850.7 gi|55379101|ref|YP_136951.1| - 2.9e-29 102.4 0.4 3.3e-29 102.2 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55379101|ref|YP_136951.1| - 0.062 13.8 0.3 1.1 9.7 0.0 2.0 1 1 1 2 2 2 0 Calcineurin-like phosphoesterase F420_ligase PF01996.16 gi|55379102|ref|YP_136952.1| - 3e-59 200.3 0.1 3.7e-59 200.0 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.20 gi|55379103|ref|YP_136953.1| - 3.9e-60 203.9 13.0 5.2e-60 203.5 13.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Beta_elim_lyase PF01212.21 gi|55379104|ref|YP_136954.1| - 8.6e-70 235.3 0.1 1.2e-69 234.9 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Methyltransf_11 PF08241.12 gi|55379105|ref|YP_136955.1| - 2.1e-21 76.4 0.0 3.7e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55379105|ref|YP_136955.1| - 3.2e-19 69.4 0.0 6.2e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379105|ref|YP_136955.1| - 6.3e-18 65.0 0.0 9.1e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55379105|ref|YP_136955.1| - 6.7e-13 48.8 0.0 9.1e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55379105|ref|YP_136955.1| - 3.7e-10 40.4 0.0 5.7e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55379105|ref|YP_136955.1| - 7.7e-10 38.5 0.0 1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|55379105|ref|YP_136955.1| - 0.00012 21.2 0.0 0.00016 20.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|55379105|ref|YP_136955.1| - 0.00029 20.5 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|55379105|ref|YP_136955.1| - 0.0018 17.6 0.0 0.0026 17.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|55379105|ref|YP_136955.1| - 0.0038 16.5 0.0 0.0055 16.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|55379105|ref|YP_136955.1| - 0.049 12.7 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin PCMT PF01135.19 gi|55379105|ref|YP_136955.1| - 0.071 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|55379105|ref|YP_136955.1| - 0.18 11.5 0.0 3.1 7.4 0.0 2.1 2 0 0 2 2 2 0 DNA methylase Methyltransf_32 PF13679.6 gi|55379105|ref|YP_136955.1| - 0.21 11.6 0.0 0.39 10.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Nudix_N_2 PF14803.6 gi|55379106|ref|YP_136956.1| - 0.16 11.9 1.5 0.46 10.5 1.5 1.8 1 1 0 1 1 1 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|55379106|ref|YP_136956.1| - 0.69 9.5 4.9 2.1 7.9 0.8 2.5 1 1 0 1 1 1 0 TFIIB zinc-binding AAA_3 PF07726.11 gi|55379107|ref|YP_136957.1| - 6.1e-61 204.0 0.2 9.9e-61 203.4 0.2 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|55379107|ref|YP_136957.1| - 6.4e-21 74.0 1.4 6.4e-21 74.0 1.4 2.4 3 0 0 3 3 3 1 AAA lid domain AAA_5 PF07728.14 gi|55379107|ref|YP_136957.1| - 4.9e-14 52.5 0.0 8.2e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|55379107|ref|YP_136957.1| - 1.1e-06 28.1 0.3 3.3e-05 23.4 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|55379107|ref|YP_136957.1| - 1.5e-06 28.6 0.0 4.1e-06 27.3 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|55379107|ref|YP_136957.1| - 4.2e-06 26.0 0.0 6.6e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|55379107|ref|YP_136957.1| - 1.8e-05 24.5 0.1 0.0038 16.9 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55379107|ref|YP_136957.1| - 0.00018 21.3 0.0 0.0017 18.1 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DUF58 PF01882.18 gi|55379108|ref|YP_136958.1| - 3.3e-16 59.3 0.9 8.1e-16 58.1 0.9 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 Ycf4 PF02392.16 gi|55379108|ref|YP_136958.1| - 0.012 15.2 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 Ycf4 DUF4179 PF13786.6 gi|55379108|ref|YP_136958.1| - 0.32 11.5 1.5 15 6.1 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) DUF1541 PF07563.11 gi|55379108|ref|YP_136958.1| - 0.49 10.3 2.1 20 5.2 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1541) Transglut_core PF01841.19 gi|55379109|ref|YP_136959.1| - 3.2e-25 88.7 0.1 9.9e-25 87.2 0.1 1.9 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 gi|55379109|ref|YP_136959.1| - 1.1e-05 25.3 0.0 5.7e-05 23.0 0.0 2.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|55379109|ref|YP_136959.1| - 0.00076 19.7 5.6 0.00076 19.7 5.6 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF3488 PF11992.8 gi|55379109|ref|YP_136959.1| - 0.0016 17.5 0.2 0.0016 17.5 0.2 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF3488) SUI1 PF01253.22 gi|55379110|ref|YP_136960.1| - 9.8e-23 80.5 0.0 1.2e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|55379110|ref|YP_136960.1| - 0.0016 18.7 0.0 0.0023 18.2 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|55379110|ref|YP_136960.1| - 0.0074 16.0 0.5 0.0093 15.7 0.5 1.1 1 0 0 1 1 1 1 DTW domain PhnJ PF06007.11 gi|55379111|ref|YP_136961.1| - 0.0066 15.5 0.1 0.68 8.9 0.1 2.3 2 0 0 2 2 2 2 Phosphonate metabolism protein PhnJ A2M PF00207.22 gi|55379111|ref|YP_136961.1| - 0.026 14.4 0.1 0.85 9.5 0.1 3.0 2 0 0 2 2 2 0 Alpha-2-macroglobulin family Peptidase_M61 PF05299.12 gi|55379111|ref|YP_136961.1| - 0.67 10.4 3.8 2.8 8.4 3.2 2.4 1 1 0 1 1 1 0 M61 glycyl aminopeptidase RcpC PF16976.5 gi|55379111|ref|YP_136961.1| - 5.5 7.1 11.7 2.8 8.0 1.7 4.2 2 1 2 4 4 4 0 Flp pilus assembly protein RcpC/CpaB EamA PF00892.20 gi|55379112|ref|YP_136962.1| - 3.5e-18 66.1 24.9 1.9e-10 41.0 7.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family Phos_pyr_kin PF08543.12 gi|55379113|ref|YP_136963.1| - 3.2e-81 272.3 6.7 4.7e-81 271.8 6.7 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|55379113|ref|YP_136963.1| - 9.2e-45 152.2 1.1 2.1e-44 151.1 1.1 1.6 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|55379113|ref|YP_136963.1| - 2.3e-07 30.4 2.5 3.9e-07 29.7 2.5 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DSBA PF01323.20 gi|55379114|ref|YP_136964.1| - 4.9e-39 134.1 0.0 5.6e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|55379114|ref|YP_136964.1| - 4.5e-09 36.7 0.0 2.9e-07 30.8 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55379114|ref|YP_136964.1| - 3.2e-05 24.3 0.5 0.0056 17.1 0.5 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|55379114|ref|YP_136964.1| - 0.0094 15.7 0.0 0.054 13.2 0.0 2.1 3 0 0 3 3 3 1 Thioredoxin 2-Hacid_dh_C PF02826.19 gi|55379115|ref|YP_136965.1| - 7e-54 181.9 0.0 9.7e-54 181.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|55379115|ref|YP_136965.1| - 1e-07 31.7 0.1 1.4e-07 31.3 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|55379115|ref|YP_136965.1| - 1.9e-05 24.9 0.1 3.2e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|55379115|ref|YP_136965.1| - 0.00025 21.5 0.0 0.00063 20.3 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|55379115|ref|YP_136965.1| - 0.0065 16.9 0.0 0.015 15.7 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|55379115|ref|YP_136965.1| - 0.014 15.3 0.1 0.027 14.4 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|55379115|ref|YP_136965.1| - 0.025 14.8 0.3 0.064 13.5 0.3 1.8 1 1 0 1 1 1 0 TrkA-N domain AdoHcyase_NAD PF00670.21 gi|55379115|ref|YP_136965.1| - 0.026 14.6 0.5 0.1 12.7 0.2 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|55379115|ref|YP_136965.1| - 0.048 13.2 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TauE PF01925.19 gi|55379117|ref|YP_136967.1| - 9.8e-30 103.9 19.8 9.8e-30 103.9 19.8 1.7 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE Usp PF00582.26 gi|55379118|ref|YP_136968.1| - 9.1e-33 113.7 0.7 1e-32 113.6 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF5619 PF18505.1 gi|55379118|ref|YP_136968.1| - 0.19 11.7 0.0 0.27 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5619) HPP PF04982.13 gi|55379119|ref|YP_136969.1| - 4.2e-13 49.5 11.9 6.7e-13 48.9 11.9 1.3 1 0 0 1 1 1 1 HPP family DUF2162 PF09930.9 gi|55379119|ref|YP_136969.1| - 2.3 7.6 14.7 0.31 10.4 10.3 1.9 2 1 0 2 2 2 0 Predicted transporter (DUF2162) GPDPase_memb PF10110.9 gi|55379120|ref|YP_136970.1| - 1.5e-08 33.8 2.7 1.5e-08 33.8 2.7 2.1 2 1 0 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.11 gi|55379120|ref|YP_136970.1| - 0.00081 19.3 4.5 0.00081 19.3 4.5 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF975) UPF0259 PF06790.11 gi|55379120|ref|YP_136970.1| - 0.013 15.3 2.7 0.013 15.3 2.7 2.2 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0259) Thioredoxin PF00085.20 gi|55379121|ref|YP_136971.1| - 6.3e-11 42.2 0.0 7.5e-11 41.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55379121|ref|YP_136971.1| - 1e-06 29.1 0.0 3.3e-05 24.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|55379121|ref|YP_136971.1| - 0.00042 20.3 0.0 0.00059 19.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Disulph_isomer PF06491.11 gi|55379121|ref|YP_136971.1| - 0.0073 16.4 0.2 0.011 15.9 0.2 1.3 1 1 0 1 1 1 1 Disulphide isomerase HyaE PF07449.11 gi|55379121|ref|YP_136971.1| - 0.025 14.6 0.4 0.082 12.9 0.4 1.7 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE TraF PF13728.6 gi|55379121|ref|YP_136971.1| - 0.12 12.1 0.0 0.2 11.5 0.0 1.4 1 1 0 1 1 1 0 F plasmid transfer operon protein Mac PF12464.8 gi|55379122|ref|YP_136972.1| - 1.8e-19 69.7 0.1 3.8e-19 68.7 0.0 1.5 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.24 gi|55379122|ref|YP_136972.1| - 8.3e-13 47.5 16.8 8.8e-11 41.1 4.4 3.8 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55379122|ref|YP_136972.1| - 6e-11 41.9 20.1 1.6e-09 37.3 4.0 4.1 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF460 PF04312.13 gi|55379123|ref|YP_136973.1| - 1.3e-47 161.0 1.0 3.3e-47 159.7 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) FAM76 PF16046.5 gi|55379123|ref|YP_136973.1| - 0.00011 21.7 6.5 0.00019 20.9 6.5 1.4 1 0 0 1 1 1 1 FAM76 protein acVLRF1 PF18859.1 gi|55379123|ref|YP_136973.1| - 0.00066 20.0 3.5 0.00066 20.0 3.5 4.2 4 2 1 5 5 5 1 Actinobacteria/chloroflexi VLRF1 release factor ADIP PF11559.8 gi|55379123|ref|YP_136973.1| - 0.045 13.8 20.4 0.078 13.1 12.0 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding BtrH_N PF14399.6 gi|55379123|ref|YP_136973.1| - 0.14 12.4 0.1 11 6.3 0.0 3.0 3 0 0 3 3 3 0 Butirosin biosynthesis protein H, N-terminal DUF4407 PF14362.6 gi|55379123|ref|YP_136973.1| - 0.19 11.0 19.0 0.018 14.4 13.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) COG5 PF10392.9 gi|55379123|ref|YP_136973.1| - 0.25 11.5 4.7 0.32 11.2 3.6 1.7 1 1 0 1 1 1 0 Golgi transport complex subunit 5 MbeD_MobD PF04899.12 gi|55379123|ref|YP_136973.1| - 0.48 10.6 2.4 9.7 6.4 0.0 2.6 2 0 0 2 2 2 0 MbeD/MobD like TMF_DNA_bd PF12329.8 gi|55379123|ref|YP_136973.1| - 0.88 9.6 21.7 0.69 9.9 1.3 2.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding ZapB PF06005.12 gi|55379123|ref|YP_136973.1| - 1.5 9.3 15.2 0.74 10.3 2.1 2.8 2 0 0 2 2 2 0 Cell division protein ZapB PI3K_P85_iSH2 PF16454.5 gi|55379123|ref|YP_136973.1| - 1.6 8.3 14.8 0.66 9.6 9.3 2.3 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TRAF_BIRC3_bd PF16673.5 gi|55379123|ref|YP_136973.1| - 1.9 8.4 10.5 0.53 10.1 3.1 3.1 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain FUSC PF04632.12 gi|55379123|ref|YP_136973.1| - 2.1 6.8 5.1 5.2 5.5 5.1 1.6 1 0 0 1 1 1 0 Fusaric acid resistance protein family ABC_tran_CTD PF16326.5 gi|55379123|ref|YP_136973.1| - 2.4 8.5 21.5 0.36 11.1 4.6 4.3 4 0 0 4 4 4 0 ABC transporter C-terminal domain DUF812 PF05667.11 gi|55379123|ref|YP_136973.1| - 3.3 6.5 22.8 2 7.2 21.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) V_ATPase_I PF01496.19 gi|55379123|ref|YP_136973.1| - 3.5 5.4 7.3 5.2 4.9 7.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.12 gi|55379123|ref|YP_136973.1| - 7.2 7.3 14.9 1.6 9.4 1.3 3.4 2 1 1 3 3 2 0 SlyX NPV_P10 PF05531.12 gi|55379123|ref|YP_136973.1| - 9.5 6.8 8.0 6.6 7.3 0.5 3.0 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein HATPase_c PF02518.26 gi|55379124|ref|YP_136974.1| - 1.5e-16 60.9 0.0 4.5e-16 59.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55379124|ref|YP_136974.1| - 1.8e-14 53.9 1.4 2.5e-14 53.5 0.2 1.9 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|55379124|ref|YP_136974.1| - 6e-13 48.8 0.1 2.1e-12 47.0 0.0 1.9 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|55379124|ref|YP_136974.1| - 1e-09 38.3 1.0 1e-09 38.3 1.0 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|55379124|ref|YP_136974.1| - 4.6e-09 36.5 0.0 1e-08 35.3 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|55379124|ref|YP_136974.1| - 5.9e-07 29.7 0.0 1.5e-06 28.4 0.0 1.7 2 0 0 2 2 1 1 PAS fold PAS_7 PF12860.7 gi|55379124|ref|YP_136974.1| - 0.00019 21.6 0.1 0.00072 19.7 0.1 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|55379124|ref|YP_136974.1| - 0.0046 16.9 0.6 0.012 15.6 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|55379124|ref|YP_136974.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|55379124|ref|YP_136974.1| - 0.024 14.7 0.4 0.11 12.6 0.1 2.3 2 0 0 2 2 2 0 PAS domain PAS_5 PF07310.13 gi|55379124|ref|YP_136974.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.6 1 1 0 1 1 1 0 PAS domain DUF4418 PF14387.6 gi|55379125|ref|YP_136975.1| - 0.58 10.4 4.9 0.71 10.1 4.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) SCP2 PF02036.17 gi|55379126|ref|YP_136976.1| - 1.7e-10 41.3 0.0 3.2e-10 40.4 0.0 1.4 1 1 0 1 1 1 1 SCP-2 sterol transfer family ABC_tran PF00005.27 gi|55379127|ref|YP_136977.1| - 1.6e-30 106.4 0.0 2.2e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55379127|ref|YP_136977.1| - 6.9e-12 45.8 0.0 6.5e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55379127|ref|YP_136977.1| - 0.00062 19.3 0.0 0.038 13.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55379127|ref|YP_136977.1| - 0.0018 18.6 0.1 0.02 15.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|55379127|ref|YP_136977.1| - 0.0023 17.8 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|55379127|ref|YP_136977.1| - 0.0024 17.7 0.0 0.043 13.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|55379127|ref|YP_136977.1| - 0.0032 17.2 0.1 0.0059 16.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|55379127|ref|YP_136977.1| - 0.0045 17.5 0.0 0.0064 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55379127|ref|YP_136977.1| - 0.0049 16.6 0.3 0.011 15.4 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379127|ref|YP_136977.1| - 0.0052 17.2 0.1 0.72 10.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|55379127|ref|YP_136977.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55379127|ref|YP_136977.1| - 0.021 15.2 0.1 0.043 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|55379127|ref|YP_136977.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|55379127|ref|YP_136977.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55379128|ref|YP_136978.1| - 2.3e-30 105.9 0.0 3e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55379128|ref|YP_136978.1| - 1.6e-12 47.9 1.7 3.6e-06 27.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|55379128|ref|YP_136978.1| - 3.1e-09 36.5 0.2 6.6e-09 35.5 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|55379128|ref|YP_136978.1| - 0.00013 21.5 0.4 0.0025 17.3 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55379128|ref|YP_136978.1| - 0.00042 20.0 0.0 0.001 18.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|55379128|ref|YP_136978.1| - 0.001 19.6 0.4 0.001 19.6 0.4 1.5 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|55379128|ref|YP_136978.1| - 0.013 15.4 0.1 0.025 14.5 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|55379128|ref|YP_136978.1| - 0.051 13.3 0.1 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|55379128|ref|YP_136978.1| - 0.11 12.6 0.2 0.27 11.3 0.2 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|55379128|ref|YP_136978.1| - 0.14 10.9 0.4 5.8 5.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NRho PF16733.5 gi|55379128|ref|YP_136978.1| - 0.15 12.2 0.1 10 6.2 0.0 2.4 2 0 0 2 2 2 0 Rhomboid N-terminal domain AAA_22 PF13401.6 gi|55379128|ref|YP_136978.1| - 0.17 12.2 0.1 0.29 11.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|55379129|ref|YP_136979.1| - 4.8e-48 163.6 33.9 4.8e-48 163.6 33.9 1.9 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|55379129|ref|YP_136979.1| - 0.028 14.2 0.1 0.058 13.1 0.1 1.5 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 DUF3341 PF11821.8 gi|55379129|ref|YP_136979.1| - 0.082 12.5 0.2 0.082 12.5 0.2 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3341) BPD_transp_2 PF02653.16 gi|55379130|ref|YP_136980.1| - 9.8e-45 152.8 37.3 1.1e-44 152.6 37.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF997 PF06196.12 gi|55379130|ref|YP_136980.1| - 0.18 11.9 0.1 0.18 11.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF997) Peripla_BP_6 PF13458.6 gi|55379131|ref|YP_136981.1| - 6.1e-42 144.5 6.0 9.2e-42 143.9 6.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|55379131|ref|YP_136981.1| - 4.4e-28 98.4 0.0 6e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|55379131|ref|YP_136981.1| - 9.3e-08 31.4 2.3 1.4e-05 24.3 0.5 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|55379131|ref|YP_136981.1| - 0.0048 16.7 1.3 0.011 15.5 1.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pro_racemase PF05544.11 gi|55379132|ref|YP_136982.1| - 2.3e-75 253.6 2.6 2.9e-75 253.3 2.6 1.0 1 0 0 1 1 1 1 Proline racemase DAP_epimerase PF01678.19 gi|55379132|ref|YP_136982.1| - 4.5e-07 30.1 2.3 0.00013 22.2 0.0 2.5 2 1 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 gi|55379132|ref|YP_136982.1| - 0.0008 18.9 0.0 0.0015 18.0 0.0 1.5 1 1 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_dh PF01619.18 gi|55379133|ref|YP_136983.1| - 8.4e-28 97.7 0.0 1.6e-27 96.9 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.12 gi|55379134|ref|YP_136984.1| - 3e-16 59.0 0.1 4.8e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|55379134|ref|YP_136984.1| - 7.7e-05 22.2 0.1 0.0002 20.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|55379134|ref|YP_136984.1| - 9.4e-05 22.6 0.1 0.00021 21.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_psq PF05225.16 gi|55379134|ref|YP_136984.1| - 0.0006 19.5 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_50 PF18024.1 gi|55379134|ref|YP_136984.1| - 0.00077 19.0 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|55379134|ref|YP_136984.1| - 0.0009 18.9 2.3 0.013 15.2 2.3 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|55379134|ref|YP_136984.1| - 0.0083 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|55379134|ref|YP_136984.1| - 0.016 15.1 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|55379134|ref|YP_136984.1| - 0.036 13.9 0.1 0.089 12.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TetR_N PF00440.23 gi|55379134|ref|YP_136984.1| - 0.039 13.8 0.0 0.32 10.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family GntR PF00392.21 gi|55379134|ref|YP_136984.1| - 0.048 13.3 0.1 0.1 12.2 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|55379134|ref|YP_136984.1| - 0.06 13.4 0.2 0.22 11.6 0.2 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|55379134|ref|YP_136984.1| - 0.063 13.1 0.4 0.29 10.9 0.4 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55379134|ref|YP_136984.1| - 0.076 12.9 1.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Big_8 PF17961.1 gi|55379134|ref|YP_136984.1| - 0.16 12.1 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig domain Aldedh PF00171.22 gi|55379135|ref|YP_136985.1| - 1.3e-143 478.8 0.0 1.7e-143 478.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|55379135|ref|YP_136985.1| - 0.066 13.2 0.4 0.16 12.0 0.4 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.14 gi|55379135|ref|YP_136985.1| - 0.19 10.8 0.0 0.36 9.8 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) eIF-1a PF01176.19 gi|55379137|ref|YP_136987.1| - 1.9e-24 85.3 0.8 2.5e-24 84.9 0.8 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|55379138|ref|YP_136988.1| - 1e-50 172.0 0.0 1.2e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|55379138|ref|YP_136988.1| - 2.2e-07 31.1 0.4 6.5e-06 26.3 0.1 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|55379138|ref|YP_136988.1| - 1.3e-05 24.6 0.1 0.00013 21.4 0.1 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|55379138|ref|YP_136988.1| - 0.00046 19.6 0.0 0.00052 19.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|55379138|ref|YP_136988.1| - 0.0019 17.0 0.0 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase HATPase_c PF02518.26 gi|55379139|ref|YP_136989.1| - 7.6e-15 55.4 0.1 1.6e-14 54.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|55379139|ref|YP_136989.1| - 2.4e-12 47.0 0.0 5.2e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|55379139|ref|YP_136989.1| - 6.5e-10 38.9 0.8 1.5e-09 37.8 0.3 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|55379139|ref|YP_136989.1| - 3.1e-08 33.8 0.1 6.2e-08 32.9 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|55379139|ref|YP_136989.1| - 1.4e-06 28.2 0.0 3e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 PAS fold Borrelia_lipo_1 PF05714.11 gi|55379139|ref|YP_136989.1| - 0.052 13.3 0.0 0.088 12.6 0.0 1.3 1 0 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein PMC2NT PF08066.12 gi|55379139|ref|YP_136989.1| - 0.21 12.3 3.5 0.55 11.0 0.1 3.0 3 1 1 4 4 4 0 PMC2NT (NUC016) domain KH_1 PF00013.29 gi|55379140|ref|YP_136990.1| - 6.6e-14 51.5 1.3 1.3e-07 31.4 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|55379140|ref|YP_136990.1| - 0.00015 21.5 4.8 0.0042 16.9 0.2 2.7 2 1 1 3 3 3 2 KH domain KH_8 PF17903.1 gi|55379140|ref|YP_136990.1| - 0.0008 19.5 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain KH_4 PF13083.6 gi|55379140|ref|YP_136990.1| - 0.096 12.6 8.0 2 8.4 0.4 3.3 2 1 1 3 3 3 0 KH domain FHA_2 PF17913.1 gi|55379140|ref|YP_136990.1| - 0.14 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 FHA domain 4HBT PF03061.22 gi|55379141|ref|YP_136991.1| - 6.2e-16 58.5 0.1 8.9e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|55379141|ref|YP_136991.1| - 0.16 11.2 0.0 0.18 11.1 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase DUF4345 PF14248.6 gi|55379143|ref|YP_136993.1| - 0.0064 16.4 0.8 0.0072 16.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) ECH_1 PF00378.20 gi|55379145|ref|YP_136995.1| - 9.8e-37 126.6 0.9 1.1e-36 126.4 0.9 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|55379145|ref|YP_136995.1| - 2.1e-25 89.9 0.4 2.5e-25 89.7 0.4 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF3105 PF11303.8 gi|55379146|ref|YP_136996.1| - 2.2e-29 102.2 0.1 3e-29 101.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) zf-HC2 PF13490.6 gi|55379146|ref|YP_136996.1| - 0.011 15.9 0.9 0.011 15.9 0.9 2.3 2 0 0 2 2 2 0 Putative zinc-finger zf-C2H2_4 PF13894.6 gi|55379146|ref|YP_136996.1| - 0.1 13.5 0.0 0.23 12.4 0.0 1.6 1 0 0 1 1 1 0 C2H2-type zinc finger NAD_synthase PF02540.17 gi|55379147|ref|YP_136997.1| - 8e-76 254.3 0.0 1e-75 254.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|55379147|ref|YP_136997.1| - 1.7e-05 23.8 0.0 0.031 13.1 0.0 2.7 3 0 0 3 3 3 2 tRNA methyl transferase LPD22 PF18834.1 gi|55379147|ref|YP_136997.1| - 0.00035 20.7 0.3 3.1 8.1 0.0 3.1 3 0 0 3 3 3 2 Large polyvalent protein associated domain 22 Asn_synthase PF00733.21 gi|55379147|ref|YP_136997.1| - 0.0046 16.7 0.0 0.0067 16.1 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|55379147|ref|YP_136997.1| - 0.025 14.1 0.0 0.18 11.3 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Rep_fac_C PF08542.11 gi|55379148|ref|YP_136998.1| - 1.8e-15 57.1 0.1 4.2e-15 55.9 0.1 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|55379148|ref|YP_136998.1| - 1.1e-13 51.3 0.0 1.8e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|55379148|ref|YP_136998.1| - 1.4e-09 38.5 0.0 3.4e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|55379148|ref|YP_136998.1| - 2.2e-07 31.4 0.2 4.1e-06 27.3 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379148|ref|YP_136998.1| - 2.4e-07 31.1 0.0 6.7e-07 29.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|55379148|ref|YP_136998.1| - 0.00013 21.7 0.1 0.0035 17.0 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_14 PF13173.6 gi|55379148|ref|YP_136998.1| - 0.00044 20.3 0.0 0.0026 17.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|55379148|ref|YP_136998.1| - 0.0013 17.8 0.0 0.0032 16.6 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein TniB PF05621.11 gi|55379148|ref|YP_136998.1| - 0.0032 16.9 0.0 0.0075 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein AAA_11 PF13086.6 gi|55379148|ref|YP_136998.1| - 0.007 16.2 0.0 0.031 14.1 0.0 1.8 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|55379148|ref|YP_136998.1| - 0.009 15.2 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|55379148|ref|YP_136998.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Tnp_P_element_C PF12596.8 gi|55379148|ref|YP_136998.1| - 0.016 15.8 0.2 0.049 14.2 0.0 2.0 1 1 1 2 2 2 0 87kDa Transposase FtsK_SpoIIIE PF01580.18 gi|55379148|ref|YP_136998.1| - 0.016 14.6 0.0 0.055 12.8 0.0 1.8 3 0 0 3 3 3 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|55379148|ref|YP_136998.1| - 0.021 14.8 0.0 0.047 13.6 0.0 1.6 1 1 0 1 1 1 0 NACHT domain DEAD PF00270.29 gi|55379148|ref|YP_136998.1| - 0.023 14.5 0.0 3.5 7.4 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|55379148|ref|YP_136998.1| - 0.025 14.3 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|55379148|ref|YP_136998.1| - 0.049 13.5 0.0 0.081 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|55379148|ref|YP_136998.1| - 0.078 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|55379148|ref|YP_136998.1| - 0.078 12.2 0.0 0.29 10.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|55379148|ref|YP_136998.1| - 0.079 13.3 0.7 0.2 12.0 0.7 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Rad17 PF03215.15 gi|55379148|ref|YP_136998.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|55379148|ref|YP_136998.1| - 0.14 12.7 0.0 1.4 9.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain Ribosomal_S24e PF01282.19 gi|55379149|ref|YP_136999.1| - 4.1e-27 93.9 0.2 5.3e-27 93.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Baculo_E25 PF05274.11 gi|55379149|ref|YP_136999.1| - 0.13 12.1 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein E25 Ribosomal_S27 PF01599.19 gi|55379150|ref|YP_137000.1| - 9e-11 41.8 3.8 1.1e-10 41.5 3.8 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|55379150|ref|YP_137000.1| - 0.0017 18.5 0.7 0.0021 18.2 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|55379150|ref|YP_137000.1| - 0.0023 17.9 0.6 0.003 17.6 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|55379150|ref|YP_137000.1| - 0.019 14.8 8.3 0.65 10.0 0.9 2.1 1 1 1 2 2 2 0 Nudix N-terminal RNHCP PF12647.7 gi|55379150|ref|YP_137000.1| - 0.021 14.8 1.1 0.027 14.5 1.1 1.2 1 0 0 1 1 1 0 RNHCP domain RNA_POL_M_15KD PF02150.16 gi|55379150|ref|YP_137000.1| - 0.021 14.7 1.3 0.039 13.8 1.3 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|55379150|ref|YP_137000.1| - 0.029 13.8 5.4 0.13 11.8 5.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|55379150|ref|YP_137000.1| - 0.052 13.7 1.4 0.074 13.2 1.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.13 gi|55379150|ref|YP_137000.1| - 0.069 12.8 2.8 0.092 12.4 2.8 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|55379150|ref|YP_137000.1| - 0.07 13.1 2.8 0.096 12.6 2.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain CpXC PF14353.6 gi|55379150|ref|YP_137000.1| - 0.11 12.6 2.7 0.15 12.1 0.1 1.9 1 1 1 2 2 2 0 CpXC protein zf-NADH-PPase PF09297.11 gi|55379150|ref|YP_137000.1| - 0.12 12.1 5.3 2.4 7.9 5.3 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Fer4_2 PF12797.7 gi|55379150|ref|YP_137000.1| - 0.13 12.4 3.3 2.8 8.2 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain HypA PF01155.19 gi|55379150|ref|YP_137000.1| - 0.14 12.2 1.4 0.15 12.1 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|55379150|ref|YP_137000.1| - 0.14 12.1 4.8 0.32 11.0 4.8 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|55379150|ref|YP_137000.1| - 0.2 11.9 3.2 5.2 7.3 3.6 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|55379150|ref|YP_137000.1| - 0.46 10.3 7.3 5.6 6.8 7.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|55379150|ref|YP_137000.1| - 1 9.0 8.0 0.16 11.5 1.8 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|55379150|ref|YP_137000.1| - 2.5 8.3 7.5 1.6 8.9 1.1 2.2 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|55379150|ref|YP_137000.1| - 4.5 7.5 7.7 40 4.4 7.7 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF1936 PF09151.10 gi|55379150|ref|YP_137000.1| - 5.5 7.0 9.0 14 5.7 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF1936) Peptidase_M22 PF00814.25 gi|55379151|ref|YP_137001.1| - 1.2e-71 241.6 0.0 1.7e-71 241.1 0.0 1.2 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|55379151|ref|YP_137001.1| - 4.1e-05 23.0 0.0 0.00012 21.5 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Ham1p_like PF01725.16 gi|55379153|ref|YP_137003.1| - 5.3e-53 179.7 0.1 1e-52 178.8 0.1 1.4 1 1 0 1 1 1 1 Ham1 family adh_short PF00106.25 gi|55379154|ref|YP_137004.1| - 5e-30 104.4 0.0 7e-30 103.9 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55379154|ref|YP_137004.1| - 6.6e-22 78.2 0.0 8e-22 77.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Glyco_transf_4 PF13439.6 gi|55379154|ref|YP_137004.1| - 0.065 13.2 0.2 0.27 11.2 0.0 2.0 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|55379154|ref|YP_137004.1| - 0.14 12.6 5.6 0.7 10.3 3.1 2.7 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|55379154|ref|YP_137004.1| - 0.21 11.6 0.0 1.1 9.3 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like MCPsignal PF00015.21 gi|55379155|ref|YP_137005.1| - 1.5e-44 151.8 60.8 7e-43 146.4 25.7 4.9 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|55379155|ref|YP_137005.1| - 1.2e-07 31.9 0.1 1.2e-07 31.9 0.1 5.9 4 2 1 5 5 4 1 HAMP domain Syntaxin-6_N PF09177.11 gi|55379155|ref|YP_137005.1| - 1.9e-05 25.1 34.2 0.0084 16.6 3.0 5.3 2 2 3 5 5 5 1 Syntaxin 6, N-terminal DUF1664 PF07889.12 gi|55379155|ref|YP_137005.1| - 3.6e-05 23.8 34.9 0.0065 16.5 0.6 5.8 4 1 3 7 7 7 3 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|55379155|ref|YP_137005.1| - 0.00015 22.0 11.6 1.2 9.4 1.1 4.9 3 2 3 6 6 6 1 Uncharacterized conserved protein DUF948 PF06103.11 gi|55379155|ref|YP_137005.1| - 0.00025 21.2 56.6 0.09 13.0 4.7 6.7 4 2 4 8 8 7 5 Bacterial protein of unknown function (DUF948) CALCOCO1 PF07888.11 gi|55379155|ref|YP_137005.1| - 0.0017 17.3 27.7 0.016 14.1 8.3 2.9 2 1 1 3 3 3 2 Calcium binding and coiled-coil domain (CALCOCO1) like Seryl_tRNA_N PF02403.22 gi|55379155|ref|YP_137005.1| - 0.0018 18.5 26.5 1.1 9.5 1.4 5.8 1 1 4 6 6 6 2 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.9 gi|55379155|ref|YP_137005.1| - 0.0034 17.6 30.7 1.7 9.0 2.5 6.0 3 2 3 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATG16 PF08614.11 gi|55379155|ref|YP_137005.1| - 0.0052 17.0 32.0 0.027 14.7 10.5 3.3 2 1 1 3 3 3 2 Autophagy protein 16 (ATG16) DUF2203 PF09969.9 gi|55379155|ref|YP_137005.1| - 0.0076 17.0 30.1 0.074 13.8 4.6 5.2 1 1 4 5 5 5 1 Uncharacterized conserved protein (DUF2203) Alanine_zipper PF11839.8 gi|55379155|ref|YP_137005.1| - 0.013 15.8 11.6 0.013 15.8 11.6 5.2 3 2 4 7 7 5 0 Alanine-zipper, major outer membrane lipoprotein CorA PF01544.18 gi|55379155|ref|YP_137005.1| - 0.023 14.0 22.8 0.013 14.8 6.3 3.3 1 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Occludin_ELL PF07303.13 gi|55379155|ref|YP_137005.1| - 0.035 14.8 5.3 3.7 8.3 0.0 4.9 4 2 2 7 7 6 0 Occludin homology domain Syntaxin_2 PF14523.6 gi|55379155|ref|YP_137005.1| - 0.048 14.0 17.4 0.062 13.7 0.1 5.3 3 2 2 5 5 4 0 Syntaxin-like protein DUF4200 PF13863.6 gi|55379155|ref|YP_137005.1| - 0.061 13.7 20.2 2.6 8.4 1.4 5.1 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.12 gi|55379155|ref|YP_137005.1| - 0.07 13.2 33.8 0.038 14.1 5.6 4.5 3 2 2 5 5 5 0 TPR/MLP1/MLP2-like protein HAUS-augmin3 PF14932.6 gi|55379155|ref|YP_137005.1| - 0.083 12.5 23.2 0.49 9.9 0.3 3.3 2 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 Laminin_II PF06009.12 gi|55379155|ref|YP_137005.1| - 0.092 12.8 47.8 0.38 10.8 5.2 5.8 2 2 2 5 5 5 0 Laminin Domain II COG2 PF06148.11 gi|55379155|ref|YP_137005.1| - 0.17 12.0 30.6 0.9 9.6 0.6 6.1 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc7 PF08317.11 gi|55379155|ref|YP_137005.1| - 0.24 10.3 33.4 0.22 10.4 6.5 3.6 2 2 3 5 5 5 0 Spc7 kinetochore protein TACC_C PF05010.14 gi|55379155|ref|YP_137005.1| - 0.27 11.0 22.2 0.053 13.3 1.4 4.4 2 2 2 4 4 4 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Cauli_AT PF03233.13 gi|55379155|ref|YP_137005.1| - 0.41 10.6 13.1 0.55 10.1 0.2 4.2 3 2 2 5 5 5 0 Aphid transmission protein Laminin_I PF06008.14 gi|55379155|ref|YP_137005.1| - 0.6 9.8 38.9 0.18 11.5 5.8 4.8 2 2 3 5 5 5 0 Laminin Domain I Sec34 PF04136.15 gi|55379155|ref|YP_137005.1| - 0.6 10.0 26.6 0.63 9.9 1.6 5.9 3 2 3 7 7 7 0 Sec34-like family RmuC PF02646.16 gi|55379155|ref|YP_137005.1| - 0.74 8.9 26.3 1.5 7.9 0.7 5.4 4 2 1 6 6 5 0 RmuC family CENP-F_leu_zip PF10473.9 gi|55379155|ref|YP_137005.1| - 0.89 9.6 29.2 5 7.1 6.4 4.5 3 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Vip3A_N PF12495.8 gi|55379155|ref|YP_137005.1| - 1.4 8.8 5.6 1.7 8.5 0.2 3.2 2 2 3 5 5 5 0 Vegetative insecticide protein 3A N terminal NPV_P10 PF05531.12 gi|55379155|ref|YP_137005.1| - 2 8.9 39.3 3.2 8.3 2.3 6.7 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein ERM PF00769.19 gi|55379155|ref|YP_137005.1| - 2.7 7.7 33.4 0.061 13.1 9.0 3.4 1 1 2 3 3 3 0 Ezrin/radixin/moesin family Med30 PF11315.8 gi|55379155|ref|YP_137005.1| - 3 8.0 9.5 5.8 7.1 3.9 3.7 1 1 3 4 4 4 0 Mediator complex subunit 30 Med15_fungi PF05397.12 gi|55379155|ref|YP_137005.1| - 3.8 7.8 6.4 9.9 6.5 0.4 3.8 2 1 2 5 5 4 0 Mediator complex subunit 15 DUF3450 PF11932.8 gi|55379155|ref|YP_137005.1| - 4.8 6.4 43.1 0.79 9.0 2.9 5.0 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) TMPIT PF07851.13 gi|55379155|ref|YP_137005.1| - 5.7 6.1 18.5 2.7 7.2 0.3 4.1 2 2 3 5 5 5 0 TMPIT-like protein TRAF_BIRC3_bd PF16673.5 gi|55379155|ref|YP_137005.1| - 6.7 6.6 9.6 0.84 9.5 1.1 3.8 2 2 1 3 3 3 0 TNF receptor-associated factor BIRC3 binding domain Ferritin PF00210.24 gi|55379155|ref|YP_137005.1| - 6.7 6.6 19.7 0.31 11.0 1.4 3.8 2 1 2 4 4 4 0 Ferritin-like domain DUF5082 PF16888.5 gi|55379155|ref|YP_137005.1| - 6.8 7.0 18.5 1.4 9.2 2.7 4.3 3 1 1 4 4 4 0 Domain of unknown function (DUF5082) Fib_alpha PF08702.10 gi|55379155|ref|YP_137005.1| - 7.2 6.8 26.2 0.75 10.0 1.3 4.9 2 2 4 6 6 6 0 Fibrinogen alpha/beta chain family Goodbye PF17109.5 gi|55379155|ref|YP_137005.1| - 8.9 6.8 15.2 15 6.0 0.4 5.0 2 2 3 5 5 5 0 fungal STAND N-terminal Goodbye domain DASH_Dam1 PF08653.10 gi|55379155|ref|YP_137005.1| - 9 6.2 13.9 47 3.9 0.0 6.5 8 0 0 8 8 8 0 DASH complex subunit Dam1 RHH_4 PF13467.6 gi|55379157|ref|YP_137007.1| - 0.0041 17.0 0.1 0.0041 17.0 0.1 1.0 1 0 0 1 1 1 1 Ribbon-helix-helix domain TrkA_N PF02254.18 gi|55379158|ref|YP_137008.1| - 7.2e-26 90.7 0.2 1e-25 90.2 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|55379158|ref|YP_137008.1| - 9e-14 51.1 0.1 1.8e-13 50.1 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|55379158|ref|YP_137008.1| - 1.9e-06 27.6 0.2 2.9e-06 27.0 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.21 gi|55379158|ref|YP_137008.1| - 0.00033 20.8 0.2 0.00045 20.3 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|55379158|ref|YP_137008.1| - 0.00081 18.8 0.1 0.0014 18.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|55379158|ref|YP_137008.1| - 0.0015 18.2 0.1 0.0025 17.5 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|55379158|ref|YP_137008.1| - 0.0025 17.4 0.1 0.0062 16.1 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|55379158|ref|YP_137008.1| - 0.0027 18.1 0.1 0.0038 17.6 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|55379158|ref|YP_137008.1| - 0.0027 17.6 0.1 0.0037 17.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|55379158|ref|YP_137008.1| - 0.0052 17.0 0.2 0.0078 16.5 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|55379158|ref|YP_137008.1| - 0.018 15.6 0.0 0.032 14.8 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|55379158|ref|YP_137008.1| - 0.019 15.1 0.1 0.039 14.1 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.19 gi|55379158|ref|YP_137008.1| - 0.032 13.5 0.0 0.037 13.3 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.21 gi|55379158|ref|YP_137008.1| - 0.04 13.2 0.1 0.047 13.0 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|55379158|ref|YP_137008.1| - 0.051 14.1 0.0 0.08 13.4 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Pyr_redox_2 PF07992.14 gi|55379158|ref|YP_137008.1| - 0.052 12.8 0.1 0.06 12.6 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55379158|ref|YP_137008.1| - 0.11 13.0 0.4 0.25 11.9 0.4 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|55379158|ref|YP_137008.1| - 0.16 11.4 0.1 0.22 10.9 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Big_3_5 PF16640.5 gi|55379159|ref|YP_137009.1| - 7.9e-06 26.0 21.6 0.00044 20.4 6.8 2.5 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) Fn3-like PF14310.6 gi|55379159|ref|YP_137009.1| - 0.0004 20.4 1.2 1.3 9.2 0.0 3.0 3 0 0 3 3 3 2 Fibronectin type III-like domain BsuPI PF12690.7 gi|55379159|ref|YP_137009.1| - 0.0014 18.6 5.0 0.86 9.7 0.0 4.1 2 2 1 3 3 3 2 Intracellular proteinase inhibitor A2M PF00207.22 gi|55379159|ref|YP_137009.1| - 0.0019 18.0 0.5 0.89 9.5 0.0 2.5 2 0 0 2 2 2 2 Alpha-2-macroglobulin family DUF3324 PF11797.8 gi|55379159|ref|YP_137009.1| - 0.02 14.9 0.1 1 9.4 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function C-terminal (DUF3324) fn3_5 PF06280.12 gi|55379159|ref|YP_137009.1| - 0.19 12.4 12.8 0.46 11.2 1.4 3.9 1 1 1 3 3 3 0 Fn3-like domain DUF1616 PF07760.11 gi|55379159|ref|YP_137009.1| - 0.27 10.6 4.1 3.3 7.0 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) Lactamase_B_2 PF12706.7 gi|55379160|ref|YP_137010.1| - 5.4e-24 84.8 0.7 5.3e-11 42.4 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|55379160|ref|YP_137010.1| - 3e-18 66.5 2.8 2.3e-16 60.4 2.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|55379160|ref|YP_137010.1| - 0.0018 17.9 0.0 0.0036 17.0 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease GFO_IDH_MocA PF01408.22 gi|55379161|ref|YP_137011.1| - 5.7e-24 85.3 0.1 1e-23 84.4 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|55379161|ref|YP_137011.1| - 6.1e-07 29.5 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.12 gi|55379161|ref|YP_137011.1| - 0.066 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DJ-1_PfpI PF01965.24 gi|55379162|ref|YP_137012.1| - 5.3e-23 81.6 0.1 7.5e-23 81.1 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Lipase_GDSL_2 PF13472.6 gi|55379162|ref|YP_137012.1| - 0.0076 16.7 0.4 0.012 16.0 0.4 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Fer2_2 PF01799.20 gi|55379162|ref|YP_137012.1| - 0.028 14.4 0.0 0.08 13.0 0.0 1.8 1 1 0 1 1 1 0 [2Fe-2S] binding domain GATase_3 PF07685.14 gi|55379162|ref|YP_137012.1| - 0.12 12.0 0.0 0.25 10.9 0.0 1.5 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Pyr_redox_3 PF13738.6 gi|55379162|ref|YP_137012.1| - 0.23 10.7 0.0 0.31 10.2 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PhzC-PhzF PF02567.16 gi|55379163|ref|YP_137013.1| - 5.5e-63 213.1 0.0 6.2e-63 212.9 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|55379163|ref|YP_137013.1| - 0.055 12.5 0.0 0.093 11.8 0.0 1.3 1 0 0 1 1 1 0 Proline racemase Glyoxalase PF00903.25 gi|55379164|ref|YP_137014.1| - 3.5e-13 49.9 0.3 3.9e-13 49.7 0.3 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|55379164|ref|YP_137014.1| - 9.7e-12 45.1 0.1 1.2e-11 44.9 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|55379164|ref|YP_137014.1| - 1e-08 35.9 1.5 1.3e-08 35.6 1.5 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|55379164|ref|YP_137014.1| - 0.00052 20.2 0.4 0.0057 16.8 0.4 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_5 PF14696.6 gi|55379164|ref|YP_137014.1| - 0.0033 17.6 0.0 0.0042 17.3 0.0 1.1 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal tRNA_int_endo_N PF02778.14 gi|55379164|ref|YP_137014.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 tRNA intron endonuclease, N-terminal domain Polysacc_synt_C PF14667.6 gi|55379165|ref|YP_137015.1| - 0.011 15.8 14.0 0.011 15.8 14.0 4.0 2 1 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF1328 PF07043.13 gi|55379167|ref|YP_137017.1| - 1.7e-09 37.8 18.0 2.3e-09 37.3 18.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Rab5ip PF07019.12 gi|55379167|ref|YP_137017.1| - 0.45 11.2 9.1 0.65 10.6 5.1 2.0 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) Phage_holin_3_6 PF07332.11 gi|55379167|ref|YP_137017.1| - 3.3 7.8 14.7 4 7.5 14.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Tetraspanin PF00335.20 gi|55379167|ref|YP_137017.1| - 6.6 6.4 9.3 7.3 6.2 9.3 1.0 1 0 0 1 1 1 0 Tetraspanin family PALP PF00291.25 gi|55379168|ref|YP_137018.1| - 6.9e-85 285.0 6.9 9e-85 284.6 6.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|55379168|ref|YP_137018.1| - 1e-06 29.2 0.1 3.8e-06 27.4 0.1 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|55379168|ref|YP_137018.1| - 0.00024 20.8 1.9 0.00042 20.0 0.1 2.4 2 0 0 2 2 2 1 ACT domain CagE_TrbE_VirB PF03135.14 gi|55379168|ref|YP_137018.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.3 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system ACT_6 PF13740.6 gi|55379168|ref|YP_137018.1| - 0.063 13.3 0.3 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 ACT domain Pep_deformylase PF01327.21 gi|55379168|ref|YP_137018.1| - 0.32 10.6 2.1 2.4 7.7 0.1 2.5 2 1 1 3 3 3 0 Polypeptide deformylase FtsA PF14450.6 gi|55379168|ref|YP_137018.1| - 1.4 9.4 5.9 9.8 6.7 3.4 2.6 2 1 0 2 2 2 0 Cell division protein FtsA TrkA_N PF02254.18 gi|55379169|ref|YP_137019.1| - 7.7e-42 142.2 7.2 6.1e-21 74.8 1.0 3.5 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|55379169|ref|YP_137019.1| - 9.4e-25 86.2 1.2 2.7e-11 43.1 0.0 3.0 3 0 0 3 3 3 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|55379169|ref|YP_137019.1| - 0.0014 18.5 2.4 0.0039 17.1 2.4 1.7 1 1 0 1 1 1 1 Ion channel FAD_binding_3 PF01494.19 gi|55379169|ref|YP_137019.1| - 0.0093 15.2 0.2 0.014 14.6 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|55379169|ref|YP_137019.1| - 0.021 15.0 0.2 0.14 12.4 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 gi|55379169|ref|YP_137019.1| - 0.041 14.4 0.5 0.14 12.7 0.1 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain F420_oxidored PF03807.17 gi|55379169|ref|YP_137019.1| - 0.043 14.4 0.1 0.24 12.0 0.0 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.21 gi|55379169|ref|YP_137019.1| - 0.11 11.8 1.1 1.5 8.1 0.0 2.5 3 0 0 3 3 3 0 ThiF family 3HCDH_N PF02737.18 gi|55379169|ref|YP_137019.1| - 1.1 9.1 3.6 0.99 9.3 0.1 2.5 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Citrate_synt PF00285.21 gi|55379170|ref|YP_137020.1| - 3.9e-124 414.4 0.0 4.5e-124 414.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TrkA_C PF02080.21 gi|55379171|ref|YP_137021.1| - 1.1e-29 102.1 0.8 4.9e-16 58.3 0.0 3.1 2 1 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|55379171|ref|YP_137021.1| - 1.3e-17 64.1 6.7 4.3e-08 33.5 1.7 2.6 2 0 0 2 2 2 2 PhoU domain Cupin_6 PF12852.7 gi|55379171|ref|YP_137021.1| - 0.00041 20.1 0.2 0.0064 16.2 0.0 2.4 2 0 0 2 2 2 1 Cupin Castor_Poll_mid PF06241.12 gi|55379171|ref|YP_137021.1| - 0.045 13.7 0.0 0.86 9.6 0.0 2.5 3 0 0 3 3 3 0 Castor and Pollux, part of voltage-gated ion channel CLZ PF16526.5 gi|55379171|ref|YP_137021.1| - 0.053 13.9 0.9 4 7.9 0.0 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KfrA_N PF11740.8 gi|55379171|ref|YP_137021.1| - 0.52 11.0 6.4 1.1 10.0 0.1 3.3 3 1 0 4 4 4 0 Plasmid replication region DNA-binding N-term AstE_AspA PF04952.14 gi|55379173|ref|YP_137023.1| - 3.2e-55 187.3 0.0 3.7e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.25 gi|55379174|ref|YP_137024.1| - 6.8e-66 222.7 4.1 7.7e-66 222.5 4.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme US6 PF17616.2 gi|55379175|ref|YP_137025.1| - 0.062 13.3 0.1 0.095 12.7 0.0 1.3 1 1 0 1 1 1 0 Viral unique short region 6 DUF1743 PF08489.11 gi|55379177|ref|YP_137027.1| - 1.8e-40 137.6 0.0 3e-40 136.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti_2 PF13742.6 gi|55379177|ref|YP_137027.1| - 9.8e-05 22.5 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|55379177|ref|YP_137027.1| - 0.00011 22.1 0.0 0.00023 21.1 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn-ribbon_8 PF09723.10 gi|55379177|ref|YP_137027.1| - 0.007 16.5 1.4 2.8 8.1 0.1 2.8 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55379177|ref|YP_137027.1| - 0.0093 15.9 0.7 0.02 14.8 0.7 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|55379177|ref|YP_137027.1| - 0.019 14.8 0.1 0.037 13.9 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.21 gi|55379177|ref|YP_137027.1| - 0.065 13.5 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain DZR PF12773.7 gi|55379177|ref|YP_137027.1| - 0.089 12.8 1.6 0.21 11.6 1.6 1.5 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|55379177|ref|YP_137027.1| - 0.12 12.4 1.3 0.3 11.1 1.3 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|55379177|ref|YP_137027.1| - 0.13 12.3 0.4 0.28 11.2 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_recom PF13408.6 gi|55379177|ref|YP_137027.1| - 0.83 10.2 5.0 1.9 9.1 5.0 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HTH_3 PF01381.22 gi|55379178|ref|YP_137028.1| - 2.9e-08 33.6 0.0 5e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|55379178|ref|YP_137028.1| - 1.5e-05 25.2 0.1 3.4e-05 24.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|55379178|ref|YP_137028.1| - 0.00013 21.8 0.0 0.00032 20.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_19 PF12844.7 gi|55379178|ref|YP_137028.1| - 0.00015 21.7 0.0 0.00039 20.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|55379178|ref|YP_137028.1| - 0.00085 19.0 0.2 0.0021 17.8 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|55379178|ref|YP_137028.1| - 0.0072 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_8 PF02954.19 gi|55379178|ref|YP_137028.1| - 0.017 14.9 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_25 PF13413.6 gi|55379178|ref|YP_137028.1| - 0.022 14.6 0.7 0.041 13.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|55379178|ref|YP_137028.1| - 0.042 13.7 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_32 PF13565.6 gi|55379178|ref|YP_137028.1| - 0.11 13.2 0.0 0.26 11.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.6 gi|55379178|ref|YP_137028.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|55379178|ref|YP_137028.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT NUMOD1 PF07453.13 gi|55379178|ref|YP_137028.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_36 PF13730.6 gi|55379178|ref|YP_137028.1| - 0.16 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|55379178|ref|YP_137028.1| - 0.17 12.1 0.1 0.65 10.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.23 gi|55379178|ref|YP_137028.1| - 0.17 12.0 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family GST_N_3 PF13417.6 gi|55379179|ref|YP_137029.1| - 8.5e-15 54.9 0.0 9.5e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|55379179|ref|YP_137029.1| - 1.1e-11 44.7 0.0 1.6e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|55379179|ref|YP_137029.1| - 9.2e-11 41.9 0.0 1.1e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|55379179|ref|YP_137029.1| - 0.023 15.1 0.2 0.028 14.8 0.2 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|55379179|ref|YP_137029.1| - 0.052 13.9 0.0 0.078 13.3 0.0 1.3 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|55379179|ref|YP_137029.1| - 0.14 12.6 0.0 0.17 12.3 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain Pribosyltran PF00156.27 gi|55379180|ref|YP_137030.1| - 7.8e-15 54.7 0.8 1.1e-14 54.3 0.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|55379180|ref|YP_137030.1| - 0.00018 21.0 0.1 0.00022 20.7 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|55379180|ref|YP_137030.1| - 0.017 15.2 0.2 0.022 14.8 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain PGM_PMM_I PF02878.16 gi|55379181|ref|YP_137031.1| - 4.6e-36 123.6 0.0 9e-36 122.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|55379181|ref|YP_137031.1| - 3.5e-29 101.4 0.5 2.1e-28 98.9 0.2 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|55379181|ref|YP_137031.1| - 1e-16 61.1 0.0 2.1e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|55379181|ref|YP_137031.1| - 5.4e-15 55.3 0.5 1.7e-14 53.7 0.5 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain FliT PF05400.13 gi|55379182|ref|YP_137032.1| - 0.018 15.8 2.0 0.018 15.8 2.0 3.9 4 0 0 4 4 4 0 Flagellar protein FliT Seryl_tRNA_N PF02403.22 gi|55379182|ref|YP_137032.1| - 0.093 13.0 2.5 0.13 12.5 0.2 2.4 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HSBP1 PF06825.12 gi|55379182|ref|YP_137032.1| - 0.6 10.0 3.6 4.5 7.2 1.1 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 PRA-CH PF01502.18 gi|55379183|ref|YP_137033.1| - 4.2e-35 119.4 0.4 5.7e-35 119.0 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.11 gi|55379184|ref|YP_137034.1| - 1.3e-12 48.0 0.0 3.1e-09 37.2 0.0 2.1 2 0 0 2 2 2 2 Archaeal Peptidase A24 C-terminus Type II Fer2 PF00111.27 gi|55379185|ref|YP_137035.1| - 9e-15 54.4 0.2 1.4e-14 53.8 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|55379185|ref|YP_137035.1| - 0.05 13.7 0.1 0.11 12.5 0.1 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|55379186|ref|YP_137036.1| - 1.8e-37 129.1 34.0 4.9e-37 127.7 33.9 1.6 1 1 0 1 1 1 1 Phosphate transporter family DUF948 PF06103.11 gi|55379188|ref|YP_137037.1| - 1.3e-06 28.5 27.0 0.00015 21.9 9.8 4.4 2 1 3 5 5 3 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|55379188|ref|YP_137037.1| - 0.00025 21.3 33.7 0.00049 20.3 8.3 4.2 1 1 3 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.21 gi|55379188|ref|YP_137037.1| - 0.0004 20.2 44.8 0.0083 16.0 8.2 3.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain UPF0242 PF06785.11 gi|55379188|ref|YP_137037.1| - 0.00057 20.1 9.7 0.00057 20.1 9.7 2.1 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus DUF3540 PF12059.8 gi|55379188|ref|YP_137037.1| - 0.00085 19.2 11.3 0.00085 19.2 11.3 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3540) Laminin_II PF06009.12 gi|55379188|ref|YP_137037.1| - 0.00088 19.3 42.6 0.33 11.0 13.2 3.6 1 1 2 3 3 3 3 Laminin Domain II Spc7 PF08317.11 gi|55379188|ref|YP_137037.1| - 0.00095 18.1 43.6 0.0095 14.8 30.2 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein TMPIT PF07851.13 gi|55379188|ref|YP_137037.1| - 0.0016 17.7 29.5 0.029 13.6 9.6 2.2 1 1 1 2 2 2 2 TMPIT-like protein Alanine_zipper PF11839.8 gi|55379188|ref|YP_137037.1| - 0.0018 18.6 52.5 0.087 13.2 10.9 4.2 1 1 3 4 4 4 3 Alanine-zipper, major outer membrane lipoprotein WXG100 PF06013.12 gi|55379188|ref|YP_137037.1| - 0.0063 16.7 25.1 0.05 13.8 10.0 4.3 1 1 1 3 3 3 2 Proteins of 100 residues with WXG DUF1664 PF07889.12 gi|55379188|ref|YP_137037.1| - 0.0066 16.5 30.9 0.015 15.3 9.7 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) Sec34 PF04136.15 gi|55379188|ref|YP_137037.1| - 0.012 15.5 29.1 0.63 9.9 1.7 3.9 1 1 1 3 3 3 0 Sec34-like family DUF4201 PF13870.6 gi|55379188|ref|YP_137037.1| - 0.027 14.2 21.1 0.31 10.7 8.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Snapin_Pallidin PF14712.6 gi|55379188|ref|YP_137037.1| - 0.029 14.8 4.3 0.029 14.8 4.3 3.2 1 1 2 3 3 3 0 Snapin/Pallidin Tropomyosin PF00261.20 gi|55379188|ref|YP_137037.1| - 0.034 13.5 53.3 0.064 12.6 24.9 2.1 2 0 0 2 2 2 0 Tropomyosin CorA PF01544.18 gi|55379188|ref|YP_137037.1| - 0.034 13.5 17.8 0.26 10.6 10.7 2.5 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Fib_alpha PF08702.10 gi|55379188|ref|YP_137037.1| - 0.035 14.3 27.2 0.079 13.1 7.6 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family LMBR1 PF04791.16 gi|55379188|ref|YP_137037.1| - 0.035 13.0 12.3 0.078 11.9 12.4 1.6 1 1 0 1 1 1 0 LMBR1-like membrane protein Atg14 PF10186.9 gi|55379188|ref|YP_137037.1| - 0.039 13.0 20.7 0.24 10.5 11.0 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|55379188|ref|YP_137037.1| - 0.05 11.8 33.6 0.12 10.5 25.5 1.8 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA Oleosin PF01277.17 gi|55379188|ref|YP_137037.1| - 0.06 13.1 0.3 0.06 13.1 0.3 5.5 1 1 3 4 4 3 0 Oleosin ERM PF00769.19 gi|55379188|ref|YP_137037.1| - 0.067 13.0 50.7 0.66 9.7 50.8 2.0 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF3450 PF11932.8 gi|55379188|ref|YP_137037.1| - 0.084 12.2 40.4 0.1 11.9 18.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DUF724 PF05266.14 gi|55379188|ref|YP_137037.1| - 0.19 11.6 33.3 0.14 11.9 13.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Synaptobrevin PF00957.21 gi|55379188|ref|YP_137037.1| - 0.29 10.9 28.5 1.4 8.8 6.4 4.1 1 1 2 3 3 3 0 Synaptobrevin DUF3584 PF12128.8 gi|55379188|ref|YP_137037.1| - 0.39 8.2 37.8 0.52 7.8 37.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1772 PF08592.11 gi|55379188|ref|YP_137037.1| - 0.63 10.4 4.9 1.5 9.1 4.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) GldM_N PF12081.8 gi|55379188|ref|YP_137037.1| - 0.63 10.1 39.8 15 5.6 23.6 3.1 1 1 1 2 2 2 0 GldM N-terminal domain ISG65-75 PF11727.8 gi|55379188|ref|YP_137037.1| - 0.67 9.1 48.0 2 7.6 18.4 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein Uso1_p115_C PF04871.13 gi|55379188|ref|YP_137037.1| - 0.87 10.0 52.6 0.8 10.1 21.8 2.5 1 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region YtxH PF12732.7 gi|55379188|ref|YP_137037.1| - 0.91 10.1 57.3 1.8e+04 -34.5 57.4 4.7 1 1 0 1 1 0 0 YtxH-like protein Serine_rich PF08824.10 gi|55379188|ref|YP_137037.1| - 1 9.4 15.6 0.58 10.2 3.7 2.9 1 1 2 3 3 3 0 Serine rich protein interaction domain DUF4229 PF14012.6 gi|55379188|ref|YP_137037.1| - 1.1 9.4 6.6 2.8 8.1 6.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF2203 PF09969.9 gi|55379188|ref|YP_137037.1| - 1.2 9.9 34.0 0.49 11.1 9.5 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF3552 PF12072.8 gi|55379188|ref|YP_137037.1| - 1.2 8.5 45.9 3 7.2 26.6 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) HMMR_N PF15905.5 gi|55379188|ref|YP_137037.1| - 1.3 8.4 44.0 0.11 12.0 19.0 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Exonuc_VII_L PF02601.15 gi|55379188|ref|YP_137037.1| - 1.8 8.0 19.4 1e+02 2.3 19.4 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit PilJ PF13675.6 gi|55379188|ref|YP_137037.1| - 1.9 8.6 20.9 0.99 9.4 6.3 3.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term ATP-synt_B PF00430.18 gi|55379188|ref|YP_137037.1| - 2 8.5 41.7 0.78 9.8 10.6 3.2 1 1 2 3 3 3 0 ATP synthase B/B' CF(0) Fez1 PF06818.15 gi|55379188|ref|YP_137037.1| - 2.3 8.6 40.0 6.5 7.2 19.4 2.1 1 1 1 2 2 2 0 Fez1 DUF812 PF05667.11 gi|55379188|ref|YP_137037.1| - 2.3 7.0 42.6 3.9 6.2 41.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) HOOK PF05622.12 gi|55379188|ref|YP_137037.1| - 2.9 5.9 34.8 5.8 4.9 34.8 1.4 1 0 0 1 1 1 0 HOOK protein ApoLp-III PF07464.11 gi|55379188|ref|YP_137037.1| - 3.1 7.9 51.2 2.7 8.1 29.0 3.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF4200 PF13863.6 gi|55379188|ref|YP_137037.1| - 3.5 8.1 41.3 0.29 11.5 17.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) RmuC PF02646.16 gi|55379188|ref|YP_137037.1| - 4 6.5 31.5 1.5 7.9 5.7 3.4 1 1 2 3 3 3 0 RmuC family Syntaxin-6_N PF09177.11 gi|55379188|ref|YP_137037.1| - 4.3 8.0 37.1 0.38 11.3 9.8 3.3 1 1 2 3 3 2 0 Syntaxin 6, N-terminal FlgN PF05130.12 gi|55379188|ref|YP_137037.1| - 4.6 7.7 26.0 0.19 12.3 6.4 3.0 1 1 2 3 3 3 0 FlgN protein TPR_MLP1_2 PF07926.12 gi|55379188|ref|YP_137037.1| - 5.4 7.1 50.0 10 6.2 20.3 2.6 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2959 PF11172.8 gi|55379188|ref|YP_137037.1| - 5.7 7.0 32.7 1.3 9.1 5.6 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) LXG PF04740.12 gi|55379188|ref|YP_137037.1| - 6.1 6.5 32.4 5.1 6.8 18.1 2.4 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF2232 PF09991.9 gi|55379188|ref|YP_137037.1| - 6.3 5.9 8.9 1.4 8.0 2.1 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2232) AF-4 PF05110.13 gi|55379188|ref|YP_137037.1| - 7.6 4.5 25.1 9.2 4.2 25.1 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Laminin_I PF06008.14 gi|55379188|ref|YP_137037.1| - 8 6.1 40.3 1.2e+03 -1.1 40.3 2.8 1 1 0 1 1 1 0 Laminin Domain I Spectrin PF00435.21 gi|55379188|ref|YP_137037.1| - 8.2 7.0 31.9 9.9 6.7 14.9 2.9 1 1 2 3 3 3 0 Spectrin repeat DUF4446 PF14584.6 gi|55379188|ref|YP_137037.1| - 8.3 6.4 24.2 2.6 8.0 5.7 3.9 1 1 2 3 3 2 0 Protein of unknown function (DUF4446) COG2 PF06148.11 gi|55379188|ref|YP_137037.1| - 9.8 6.3 32.0 5.2 7.2 4.9 4.1 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 His_biosynth PF00977.21 gi|229269504|ref|YP_137038.2| - 7.9e-71 238.1 4.8 8.9e-71 238.0 4.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|229269504|ref|YP_137038.2| - 4.1e-11 42.6 1.1 5.2e-08 32.4 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|229269504|ref|YP_137038.2| - 3.7e-08 32.8 0.2 0.0049 16.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|229269504|ref|YP_137038.2| - 4.3e-07 29.6 7.3 1.3e-06 28.0 0.8 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|229269504|ref|YP_137038.2| - 1.3e-05 24.4 4.0 0.0038 16.3 0.5 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain ThiG PF05690.14 gi|229269504|ref|YP_137038.2| - 2e-05 24.0 4.8 0.022 14.0 0.3 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|229269504|ref|YP_137038.2| - 0.00023 20.4 0.1 0.0046 16.2 0.0 2.6 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|229269504|ref|YP_137038.2| - 0.00029 20.4 2.0 0.043 13.3 0.2 2.2 2 0 0 2 2 2 2 PcrB family NanE PF04131.14 gi|229269504|ref|YP_137038.2| - 0.00059 19.1 0.4 0.36 10.0 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|229269504|ref|YP_137038.2| - 0.0011 18.1 14.1 0.062 12.3 3.2 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Trp_syntA PF00290.20 gi|229269504|ref|YP_137038.2| - 0.0017 17.2 1.9 0.15 10.9 0.2 2.1 2 0 0 2 2 2 2 Tryptophan synthase alpha chain G3P_antiterm PF04309.12 gi|229269504|ref|YP_137038.2| - 0.0064 15.9 0.8 0.039 13.4 0.1 2.0 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|229269504|ref|YP_137038.2| - 0.028 13.8 1.0 0.045 13.1 0.1 1.7 2 0 0 2 2 2 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|229269504|ref|YP_137038.2| - 0.075 12.2 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF561) DNA_pol_lambd_f PF10391.9 gi|229269504|ref|YP_137038.2| - 0.13 12.1 0.0 1.7 8.5 0.0 2.5 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda Ribul_P_3_epim PF00834.19 gi|229269504|ref|YP_137038.2| - 0.25 10.7 3.3 0.43 9.9 0.2 2.2 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Methyltransf_11 PF08241.12 gi|55379189|ref|YP_137039.1| - 5.7e-17 62.1 0.0 1e-16 61.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55379189|ref|YP_137039.1| - 1.9e-16 60.5 0.0 3.5e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379189|ref|YP_137039.1| - 1.2e-09 38.2 0.0 1.5e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55379189|ref|YP_137039.1| - 1.4e-08 34.7 0.0 1.9e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55379189|ref|YP_137039.1| - 8e-08 32.9 0.0 1.5e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|55379189|ref|YP_137039.1| - 8.6e-05 22.5 0.0 0.00012 22.0 0.0 1.1 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|55379189|ref|YP_137039.1| - 0.00065 19.1 0.0 0.0013 18.1 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|55379189|ref|YP_137039.1| - 0.0025 17.2 0.0 0.0046 16.3 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|55379189|ref|YP_137039.1| - 0.0064 16.1 0.0 0.0098 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Pox_MCEL PF03291.16 gi|55379189|ref|YP_137039.1| - 0.0067 15.6 0.0 0.073 12.2 0.0 2.0 2 0 0 2 2 2 1 mRNA capping enzyme CP12 PF02672.15 gi|55379189|ref|YP_137039.1| - 0.062 14.1 0.0 0.17 12.7 0.0 1.7 2 0 0 2 2 2 0 CP12 domain MetW PF07021.12 gi|55379189|ref|YP_137039.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MutS_V PF00488.21 gi|55379190|ref|YP_137040.1| - 4.9e-82 274.5 0.0 8.4e-82 273.8 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|55379190|ref|YP_137040.1| - 1e-35 123.7 5.3 1.7e-35 123.0 5.3 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|55379190|ref|YP_137040.1| - 1.9e-26 92.5 0.0 3.5e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|55379190|ref|YP_137040.1| - 1.7e-24 86.0 0.8 3.6e-24 84.9 0.8 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|55379190|ref|YP_137040.1| - 1.3e-21 77.3 0.0 3.1e-21 76.1 0.0 1.6 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.6 gi|55379190|ref|YP_137040.1| - 0.11 12.6 0.0 0.42 10.7 0.0 2.0 1 1 0 1 1 1 0 AAA domain Rnk_N PF14760.6 gi|55379190|ref|YP_137040.1| - 2.2 8.8 11.8 0.41 11.2 5.5 3.0 2 0 0 2 2 2 0 Rnk N-terminus HATPase_c PF02518.26 gi|55379191|ref|YP_137041.1| - 2.4e-18 66.7 0.0 7.1e-18 65.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|55379191|ref|YP_137041.1| - 4.2e-18 66.0 0.3 1.7e-17 64.0 0.3 2.1 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|55379191|ref|YP_137041.1| - 1.5e-15 57.3 0.0 4.4e-15 55.8 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|55379191|ref|YP_137041.1| - 1.4e-13 51.1 0.1 4.5e-13 49.4 0.1 2.0 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|55379191|ref|YP_137041.1| - 2.2e-12 46.8 0.5 2.2e-12 46.8 0.5 2.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|55379191|ref|YP_137041.1| - 3.3e-10 40.1 0.0 7.8e-10 38.9 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|55379191|ref|YP_137041.1| - 2.9e-07 30.7 0.0 1.6e-06 28.3 0.0 2.3 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 gi|55379191|ref|YP_137041.1| - 2.9e-07 30.5 0.0 3.5e-06 27.0 0.0 2.7 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.6 gi|55379191|ref|YP_137041.1| - 3.3e-05 24.2 0.0 7.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|55379191|ref|YP_137041.1| - 0.053 13.8 0.1 0.35 11.2 0.0 2.2 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|55379191|ref|YP_137041.1| - 0.11 12.5 0.1 0.11 12.5 0.1 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain ABC_tran PF00005.27 gi|55379192|ref|YP_137042.1| - 2.8e-29 102.4 0.0 4.3e-29 101.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55379192|ref|YP_137042.1| - 6e-11 42.7 3.3 1.6e-06 28.1 0.1 2.8 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system MukB PF04310.12 gi|55379192|ref|YP_137042.1| - 0.00051 19.9 0.0 0.00076 19.4 0.0 1.2 1 0 0 1 1 1 1 MukB N-terminal SMC_N PF02463.19 gi|55379192|ref|YP_137042.1| - 0.0039 16.7 0.6 1 8.7 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|55379192|ref|YP_137042.1| - 0.0062 17.2 0.0 0.013 16.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|55379192|ref|YP_137042.1| - 0.0069 16.1 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain CarboxypepD_reg PF13620.6 gi|55379192|ref|YP_137042.1| - 0.0079 16.4 0.1 0.017 15.3 0.1 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain AAA_23 PF13476.6 gi|55379192|ref|YP_137042.1| - 0.024 15.2 0.0 0.034 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|55379192|ref|YP_137042.1| - 0.025 15.0 0.0 0.043 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|55379192|ref|YP_137042.1| - 0.066 13.1 0.7 0.73 9.7 0.0 2.6 2 1 1 3 3 3 0 NTPase ATG_C PF09333.11 gi|55379192|ref|YP_137042.1| - 0.081 13.3 0.0 0.46 10.9 0.0 2.0 2 0 0 2 2 2 0 Autophagy-related protein C terminal domain AAA PF00004.29 gi|55379192|ref|YP_137042.1| - 0.082 13.3 0.1 0.2 12.1 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|55379192|ref|YP_137042.1| - 0.097 12.4 0.0 0.24 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|55379192|ref|YP_137042.1| - 0.1 12.9 0.1 0.18 12.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|55379192|ref|YP_137042.1| - 0.15 12.4 0.4 0.6 10.4 0.4 2.0 1 1 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.7 gi|55379193|ref|YP_137043.1| - 0.093 11.8 18.7 0.22 10.6 18.7 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein LolA_like PF17131.4 gi|55379194|ref|YP_137044.1| - 2.4e-07 30.7 1.0 3e-05 23.8 0.3 3.1 2 1 1 3 3 3 2 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|55379194|ref|YP_137044.1| - 0.0047 16.5 0.1 0.021 14.4 0.1 2.1 1 1 0 1 1 1 1 MucB/RseB N-terminal domain LolA_like PF17131.4 gi|55379195|ref|YP_137045.1| - 2.1e-09 37.4 2.0 9.4e-06 25.5 0.1 3.4 2 1 1 3 3 3 3 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|55379195|ref|YP_137045.1| - 0.00086 18.9 0.1 0.0025 17.4 0.0 1.9 2 0 0 2 2 2 1 MucB/RseB N-terminal domain HTH_24 PF13412.6 gi|55379196|ref|YP_137046.1| - 2.6e-05 23.7 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55379196|ref|YP_137046.1| - 3.9e-05 23.6 0.0 7.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55379196|ref|YP_137046.1| - 0.00013 21.7 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|55379196|ref|YP_137046.1| - 0.0002 21.2 0.0 0.00029 20.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|55379196|ref|YP_137046.1| - 0.0014 18.5 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|55379196|ref|YP_137046.1| - 0.0018 18.2 0.0 0.0025 17.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|55379196|ref|YP_137046.1| - 0.0022 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|55379196|ref|YP_137046.1| - 0.0025 17.7 0.0 0.0032 17.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|55379196|ref|YP_137046.1| - 0.0035 17.3 0.0 0.0054 16.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FUR PF01475.19 gi|55379196|ref|YP_137046.1| - 0.0044 17.2 0.0 0.0056 16.8 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_5 PF01022.20 gi|55379196|ref|YP_137046.1| - 0.0059 16.4 0.0 0.0082 16.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|55379196|ref|YP_137046.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain B-block_TFIIIC PF04182.12 gi|55379196|ref|YP_137046.1| - 0.051 13.7 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR PF01047.22 gi|55379196|ref|YP_137046.1| - 0.069 13.1 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family Pro-kuma_activ PF09286.11 gi|55379196|ref|YP_137046.1| - 0.084 13.2 0.0 0.098 13.0 0.0 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain PadR PF03551.14 gi|55379196|ref|YP_137046.1| - 0.12 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|55379196|ref|YP_137046.1| - 0.21 11.7 0.0 0.36 11.0 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MscS_TM PF12794.7 gi|55379197|ref|YP_137047.1| - 0.036 12.9 2.3 0.042 12.7 2.3 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF5353 PF17304.2 gi|55379197|ref|YP_137047.1| - 0.07 12.9 1.4 0.13 12.0 0.7 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5353) Tetraspanin PF00335.20 gi|55379197|ref|YP_137047.1| - 0.085 12.6 3.1 0.091 12.5 3.1 1.1 1 0 0 1 1 1 0 Tetraspanin family QCR10 PF09796.9 gi|55379197|ref|YP_137047.1| - 0.21 11.7 1.8 13 6.0 0.1 2.3 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) DUF202 PF02656.15 gi|55379197|ref|YP_137047.1| - 0.79 10.2 7.6 1.6 9.2 3.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Oxidored_molyb PF00174.19 gi|55379198|ref|YP_137048.1| - 0.0019 17.9 0.0 0.0067 16.1 0.0 2.0 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain RNA_pol_N PF01194.17 gi|55379199|ref|YP_137049.1| - 0.11 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA polymerases N / 8 kDa subunit DUF1676 PF07898.13 gi|55379201|ref|YP_137051.1| - 0.54 10.3 2.7 0.97 9.5 2.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1676) Hydrolase_3 PF08282.12 gi|55379202|ref|YP_137052.1| - 1.5e-09 38.0 0.0 0.00063 19.6 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55379202|ref|YP_137052.1| - 0.0052 17.2 0.3 3.7 7.9 0.0 2.8 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|55379202|ref|YP_137052.1| - 0.14 11.7 0.1 0.7 9.4 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase MutL_C PF08676.11 gi|55379204|ref|YP_137054.1| - 7.1e-36 123.2 0.0 1.1e-35 122.6 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|55379204|ref|YP_137054.1| - 7.7e-31 106.2 0.0 1.4e-30 105.4 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|55379204|ref|YP_137054.1| - 6.8e-12 45.4 0.1 1.6e-11 44.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|55379204|ref|YP_137054.1| - 7.2e-07 29.7 0.1 1.9e-06 28.4 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPX PF03105.19 gi|55379204|ref|YP_137054.1| - 5.3 6.8 8.5 7.6 6.3 8.5 1.2 1 0 0 1 1 1 0 SPX domain PfkB PF00294.24 gi|55379205|ref|YP_137055.1| - 5.8e-29 101.3 0.2 6.6e-29 101.2 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Oxidored_nitro PF00148.19 gi|55379205|ref|YP_137055.1| - 0.083 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase GCV_T PF01571.21 gi|55379206|ref|YP_137056.1| - 3.2e-39 134.8 0.0 4.3e-39 134.4 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|55379206|ref|YP_137056.1| - 1.3e-12 47.5 0.0 2.6e-12 46.5 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Fer2 PF00111.27 gi|55379207|ref|YP_137057.1| - 5.8e-08 32.6 0.0 8.7e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|55379207|ref|YP_137057.1| - 0.003 17.6 0.3 0.014 15.4 0.3 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain LodA_N PF17990.1 gi|55379207|ref|YP_137057.1| - 0.18 11.7 0.0 0.18 11.7 0.0 1.1 1 0 0 1 1 1 0 L-Lysine epsilon oxidase N-terminal ACT PF01842.25 gi|55379208|ref|YP_137058.1| - 2.2e-08 33.7 0.8 4.8e-08 32.6 0.2 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|55379208|ref|YP_137058.1| - 7.9e-05 23.2 0.9 0.001 19.6 0.2 2.6 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|55379208|ref|YP_137058.1| - 0.002 17.9 0.2 0.0046 16.7 0.1 1.6 2 0 0 2 2 2 1 ACT domain IGPD PF00475.18 gi|55379209|ref|YP_137059.1| - 6.4e-61 204.9 1.3 6.4e-61 204.9 1.3 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Abhydrolase_1 PF00561.20 gi|55379210|ref|YP_137060.1| - 2.5e-14 53.5 0.3 3.8e-12 46.4 0.3 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|55379210|ref|YP_137060.1| - 3.6e-10 40.8 13.7 4.2e-10 40.6 13.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|55379210|ref|YP_137060.1| - 7.9e-08 31.9 0.5 2.9e-07 30.0 0.5 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 TrkA_N PF02254.18 gi|55379211|ref|YP_137061.1| - 1.3e-27 96.3 3.9 1.3e-27 96.3 3.9 1.9 2 0 0 2 2 1 1 TrkA-N domain Na_H_Exchanger PF00999.21 gi|55379211|ref|YP_137061.1| - 1.4e-17 63.6 25.3 2e-17 63.1 25.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|55379211|ref|YP_137061.1| - 8.5e-10 38.3 0.8 3.7e-09 36.3 0.0 2.5 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|55379211|ref|YP_137061.1| - 3.5e-06 27.4 0.7 1e-05 25.9 0.7 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|55379211|ref|YP_137061.1| - 0.00036 19.9 1.5 0.00068 19.0 1.5 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|55379211|ref|YP_137061.1| - 0.00046 19.8 0.1 0.00082 19.0 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|55379211|ref|YP_137061.1| - 0.00057 19.4 0.4 0.00095 18.7 0.4 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|55379211|ref|YP_137061.1| - 0.0016 17.7 0.1 0.0028 17.0 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.15 gi|55379211|ref|YP_137061.1| - 0.002 18.3 0.5 0.0077 16.4 0.4 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|55379211|ref|YP_137061.1| - 0.0043 16.9 0.2 0.0043 16.9 0.2 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|55379211|ref|YP_137061.1| - 0.0061 16.4 1.5 0.0061 16.4 1.5 1.7 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein ApbA PF02558.16 gi|55379211|ref|YP_137061.1| - 0.012 15.2 0.1 0.026 14.2 0.1 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|55379211|ref|YP_137061.1| - 0.022 15.2 1.2 0.066 13.7 0.9 2.0 1 1 1 2 2 2 0 XdhC Rossmann domain Sacchrp_dh_NADP PF03435.18 gi|55379211|ref|YP_137061.1| - 0.035 14.4 1.2 0.13 12.5 1.2 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|55379211|ref|YP_137061.1| - 0.05 13.5 10.9 0.047 13.6 5.2 2.5 1 1 1 2 2 2 0 NAD(P)H-binding 2-Hacid_dh_C PF02826.19 gi|55379211|ref|YP_137061.1| - 0.06 12.7 0.3 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|55379211|ref|YP_137061.1| - 0.16 11.3 5.7 0.072 12.4 1.4 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain tRNA-synt_2c PF01411.19 gi|55379213|ref|YP_137063.1| - 4.7e-118 395.1 0.0 6e-118 394.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|55379213|ref|YP_137063.1| - 1.7e-16 60.9 2.0 3.9e-16 59.7 2.0 1.7 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|55379213|ref|YP_137063.1| - 1.1e-13 51.1 0.4 2.5e-13 49.9 0.4 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain VGPC1_C PF16799.5 gi|55379213|ref|YP_137063.1| - 0.18 11.8 0.0 4.4 7.4 0.0 2.4 2 0 0 2 2 2 0 C-terminal membrane-localisation domain of ion-channel, VCN1 Rep_fac_C PF08542.11 gi|55379214|ref|YP_137064.1| - 1.7e-23 82.8 0.0 4.4e-23 81.5 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|55379214|ref|YP_137064.1| - 3.7e-20 72.7 0.0 7.8e-19 68.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|55379214|ref|YP_137064.1| - 3e-16 59.6 0.0 7.4e-12 45.3 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|55379214|ref|YP_137064.1| - 8.2e-08 32.2 0.0 9.6e-07 28.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|55379214|ref|YP_137064.1| - 4.9e-07 30.3 1.2 0.00029 21.3 0.0 2.8 2 2 1 3 3 3 1 AAA ATPase domain Rad17 PF03215.15 gi|55379214|ref|YP_137064.1| - 1.3e-06 28.5 0.0 2.2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|55379214|ref|YP_137064.1| - 2.4e-06 27.6 0.0 4.8e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|55379214|ref|YP_137064.1| - 1.1e-05 25.7 0.2 3.8e-05 23.9 0.2 2.0 1 0 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|55379214|ref|YP_137064.1| - 2.7e-05 24.5 0.5 0.15 12.3 0.1 2.9 2 1 1 3 3 3 2 AAA domain AAA_3 PF07726.11 gi|55379214|ref|YP_137064.1| - 0.00012 22.0 0.0 0.00037 20.4 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|55379214|ref|YP_137064.1| - 0.00018 21.6 0.0 0.0013 18.8 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|55379214|ref|YP_137064.1| - 0.0004 20.2 0.0 0.0041 16.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|55379214|ref|YP_137064.1| - 0.00065 19.1 0.0 0.11 11.9 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|55379214|ref|YP_137064.1| - 0.0008 19.1 0.0 0.027 14.2 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|55379214|ref|YP_137064.1| - 0.0011 18.6 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DNA_pol3_delta PF06144.13 gi|55379214|ref|YP_137064.1| - 0.0017 18.2 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_18 PF13238.6 gi|55379214|ref|YP_137064.1| - 0.0026 18.3 0.0 0.01 16.4 0.0 2.0 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|55379214|ref|YP_137064.1| - 0.0028 16.9 0.0 0.014 14.7 0.0 1.9 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_5 PF07728.14 gi|55379214|ref|YP_137064.1| - 0.0033 17.4 0.0 0.027 14.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.6 gi|55379214|ref|YP_137064.1| - 0.0074 16.4 0.0 0.023 14.8 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain T2SSE PF00437.20 gi|55379214|ref|YP_137064.1| - 0.0097 15.0 0.0 0.019 14.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|55379214|ref|YP_137064.1| - 0.011 15.5 0.1 0.038 13.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|55379214|ref|YP_137064.1| - 0.013 15.5 0.0 0.5 10.3 0.0 2.3 2 0 0 2 2 2 0 NACHT domain AAA_24 PF13479.6 gi|55379214|ref|YP_137064.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|55379214|ref|YP_137064.1| - 0.018 14.5 0.0 0.091 12.2 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|55379214|ref|YP_137064.1| - 0.031 13.8 1.0 0.3 10.6 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|55379214|ref|YP_137064.1| - 0.041 14.0 0.0 0.089 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.22 gi|55379214|ref|YP_137064.1| - 0.046 14.1 0.0 0.097 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PEPCK_ATP PF01293.20 gi|55379214|ref|YP_137064.1| - 0.05 12.3 0.0 0.084 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Viral_helicase1 PF01443.18 gi|55379214|ref|YP_137064.1| - 0.059 13.1 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|55379214|ref|YP_137064.1| - 0.06 13.1 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|55379214|ref|YP_137064.1| - 0.068 12.1 0.0 0.56 9.1 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 gi|55379214|ref|YP_137064.1| - 0.071 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SNF2_N PF00176.23 gi|55379214|ref|YP_137064.1| - 0.072 11.8 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF3400 PF11880.8 gi|55379214|ref|YP_137064.1| - 0.074 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) NB-ARC PF00931.22 gi|55379214|ref|YP_137064.1| - 0.078 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|55379214|ref|YP_137064.1| - 0.08 13.4 0.0 0.12 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|55379214|ref|YP_137064.1| - 0.094 11.9 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|55379214|ref|YP_137064.1| - 0.098 13.0 0.1 0.25 11.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|55379214|ref|YP_137064.1| - 0.11 12.7 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|55379214|ref|YP_137064.1| - 0.11 12.2 0.5 8.4 6.1 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|55379214|ref|YP_137064.1| - 0.17 11.9 0.0 0.39 10.7 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Glyco_hydro_42C PF08533.10 gi|55379215|ref|YP_137065.1| - 0.046 13.4 0.1 0.081 12.7 0.1 1.6 1 0 0 1 1 1 0 Beta-galactosidase C-terminal domain Acetyltransf_10 PF13673.7 gi|55379216|ref|YP_137066.1| - 2.2e-10 40.6 0.0 3.1e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55379216|ref|YP_137066.1| - 4.1e-09 36.7 0.0 5e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55379216|ref|YP_137066.1| - 3.7e-08 33.6 0.0 4.4e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|55379216|ref|YP_137066.1| - 0.0029 17.7 0.0 0.0047 17.0 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|55379216|ref|YP_137066.1| - 0.027 14.4 0.1 0.22 11.5 0.1 2.0 1 1 0 1 1 1 0 FR47-like protein Pyridox_ox_2 PF12900.7 gi|55379217|ref|YP_137067.1| - 3.6e-19 69.1 0.1 4.1e-19 69.0 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PGM_PMM_I PF02878.16 gi|55379218|ref|YP_137068.1| - 5.4e-33 113.6 0.0 1e-32 112.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|55379218|ref|YP_137068.1| - 2.1e-25 89.1 0.0 3.7e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|55379218|ref|YP_137068.1| - 9.8e-23 80.7 0.3 2.6e-22 79.4 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|55379218|ref|YP_137068.1| - 9e-16 57.8 0.6 3.8e-15 55.8 0.1 2.4 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.24 gi|55379219|ref|YP_137069.1| - 2.4e-18 66.2 0.1 2.9e-18 65.9 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|55379219|ref|YP_137069.1| - 0.011 16.2 0.2 0.015 15.8 0.2 1.2 1 0 0 1 1 1 0 T5orf172 domain AIRC PF00731.20 gi|55379220|ref|YP_137070.1| - 9.2e-14 51.3 2.2 9.2e-14 51.3 2.2 1.8 2 0 0 2 2 2 1 AIR carboxylase DUF1931 PF09123.11 gi|55379221|ref|YP_137071.1| - 0.00024 21.2 0.7 0.00028 21.0 0.7 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|55379221|ref|YP_137071.1| - 0.0004 20.6 0.0 0.00048 20.3 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|55379221|ref|YP_137071.1| - 0.015 15.7 0.1 0.016 15.6 0.1 1.1 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 DctP PF03480.13 gi|55379221|ref|YP_137071.1| - 0.034 13.5 0.1 0.036 13.4 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Rib_5-P_isom_A PF06026.14 gi|55379222|ref|YP_137072.1| - 2.1e-64 216.3 0.0 2.5e-64 216.0 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|55379222|ref|YP_137072.1| - 0.00065 19.7 1.4 0.0036 17.2 0.4 2.1 1 1 0 2 2 2 1 DeoR C terminal sensor domain PGM_PMM_I PF02878.16 gi|55379223|ref|YP_137073.1| - 1.2e-32 112.4 0.0 2.3e-32 111.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|55379223|ref|YP_137073.1| - 3.6e-19 69.3 0.1 1e-18 67.8 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|55379223|ref|YP_137073.1| - 3.7e-17 62.6 0.0 3.2e-16 59.5 0.0 2.4 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|55379223|ref|YP_137073.1| - 3.7e-11 43.0 0.7 1.3e-10 41.3 0.7 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain CinA_KH PF18146.1 gi|55379223|ref|YP_137073.1| - 0.17 12.1 0.1 0.62 10.3 0.1 2.0 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain ATPase PF06745.13 gi|55379224|ref|YP_137074.1| - 0.0091 15.4 0.4 0.012 15.0 0.4 1.1 1 0 0 1 1 1 1 KaiC Type2_restr_D3 PF16902.5 gi|55379224|ref|YP_137074.1| - 0.034 14.1 0.3 0.072 13.0 0.3 1.6 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain DUF2391 PF09622.10 gi|55379225|ref|YP_137075.1| - 2.3e-05 23.9 4.0 3.6e-05 23.2 4.0 1.3 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) FixP_N PF14715.6 gi|55379225|ref|YP_137075.1| - 0.031 14.0 0.5 0.069 12.9 0.5 1.5 1 0 0 1 1 1 0 N-terminal domain of cytochrome oxidase-cbb3, FixP UPRTase PF14681.6 gi|55379226|ref|YP_137076.1| - 7.7e-49 166.0 0.1 9e-49 165.7 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|55379226|ref|YP_137076.1| - 5.2e-08 32.6 0.4 7.2e-08 32.1 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DctM PF06808.12 gi|55379227|ref|YP_137077.1| - 1.6e-83 280.9 49.8 8.1e-53 179.7 23.7 2.5 2 0 0 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 gi|55379228|ref|YP_137078.1| - 6.5e-24 84.1 0.1 1.2e-23 83.2 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1_3 PF16868.5 gi|55379229|ref|YP_137079.1| - 1.3e-66 225.0 4.3 1.6e-66 224.7 4.3 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|55379229|ref|YP_137079.1| - 6.3e-09 36.1 1.1 1.4e-08 34.9 0.3 1.9 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|55379229|ref|YP_137079.1| - 8.5e-08 32.1 5.4 1.5e-07 31.3 5.4 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|55379229|ref|YP_137079.1| - 0.00016 21.4 6.1 0.00039 20.1 6.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_2 PF13379.6 gi|55379229|ref|YP_137079.1| - 0.00023 20.9 0.6 0.01 15.5 0.0 2.2 1 1 1 2 2 2 1 NMT1-like family UCR_Fe-S_N PF10399.9 gi|55379229|ref|YP_137079.1| - 0.086 12.2 0.6 0.23 10.9 0.6 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal P_gingi_FimA PF06321.11 gi|55379229|ref|YP_137079.1| - 0.22 11.6 0.1 0.22 11.6 0.1 2.8 2 1 0 3 3 3 0 Major fimbrial subunit protein (FimA) DJ-1_PfpI PF01965.24 gi|55379230|ref|YP_137080.1| - 3.1e-13 49.9 0.1 1.2e-11 44.7 0.1 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|55379230|ref|YP_137080.1| - 1.9e-07 31.0 0.0 4.8e-07 29.7 0.0 1.7 1 1 0 1 1 1 1 ThiJ/PfpI family-like Tape_meas_lam_C PF09718.10 gi|55379231|ref|YP_137081.1| - 0.06 13.5 0.1 0.19 11.9 0.1 1.8 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) PHO4 PF01384.20 gi|55379233|ref|YP_137083.1| - 2e-42 145.5 31.4 2.5e-42 145.1 31.4 1.1 1 0 0 1 1 1 1 Phosphate transporter family FAA_hydrolase PF01557.18 gi|55379235|ref|YP_137085.1| - 0.058 13.1 0.1 0.084 12.5 0.1 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family LPAM_2 PF13627.6 gi|55379236|ref|YP_137086.1| - 1.7 8.6 4.5 3.4 7.6 4.5 1.5 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site CstA PF02554.14 gi|55379237|ref|YP_137087.1| - 1.3e-104 350.1 21.3 1.3e-104 350.1 21.3 2.5 2 1 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|55379237|ref|YP_137087.1| - 9.4e-30 103.4 2.6 9.4e-30 103.4 2.6 3.7 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA Pox_P21 PF05313.12 gi|55379237|ref|YP_137087.1| - 0.58 9.7 5.0 0.24 11.0 1.0 2.4 3 0 0 3 3 3 0 Poxvirus P21 membrane protein ArsA_ATPase PF02374.15 gi|55379238|ref|YP_137088.1| - 1.1e-66 225.1 0.0 1.3e-66 224.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|55379238|ref|YP_137088.1| - 4.9e-09 36.3 0.0 1.7e-08 34.5 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|55379238|ref|YP_137088.1| - 1.3e-07 31.7 0.0 2.4e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|55379238|ref|YP_137088.1| - 0.00089 18.8 0.7 0.13 11.7 1.4 2.4 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|55379238|ref|YP_137088.1| - 0.04 13.8 0.5 0.091 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|55379238|ref|YP_137088.1| - 0.074 12.8 0.1 0.21 11.3 0.1 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein PhoH PF02562.16 gi|55379238|ref|YP_137088.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Fer4_NifH PF00142.18 gi|55379238|ref|YP_137088.1| - 0.23 10.9 0.0 0.43 10.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family cobW PF02492.19 gi|55379239|ref|YP_137089.1| - 4.5e-49 166.4 0.3 5.8e-49 166.1 0.3 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|55379239|ref|YP_137089.1| - 1.6e-27 95.3 0.0 3.6e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|55379239|ref|YP_137089.1| - 5.3e-07 29.7 0.1 0.036 14.0 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|55379239|ref|YP_137089.1| - 0.00068 19.2 0.0 0.38 10.3 0.1 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|55379239|ref|YP_137089.1| - 0.0047 17.3 0.5 0.013 15.9 0.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|55379239|ref|YP_137089.1| - 0.0066 16.5 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TrwB_AAD_bind PF10412.9 gi|55379239|ref|YP_137089.1| - 0.0069 15.3 0.1 0.012 14.5 0.1 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|55379239|ref|YP_137089.1| - 0.008 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|55379239|ref|YP_137089.1| - 0.011 15.0 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|55379239|ref|YP_137089.1| - 0.019 14.0 0.2 0.036 13.1 0.2 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|55379239|ref|YP_137089.1| - 0.069 13.3 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|55379239|ref|YP_137089.1| - 0.084 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|55379239|ref|YP_137089.1| - 0.092 13.0 0.0 0.24 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|55379239|ref|YP_137089.1| - 0.12 12.9 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DZR PF12773.7 gi|55379240|ref|YP_137090.1| - 0.00078 19.4 0.5 0.0011 19.0 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|55379240|ref|YP_137090.1| - 0.0015 18.6 0.7 0.003 17.6 0.7 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|55379240|ref|YP_137090.1| - 0.002 18.3 1.2 0.0034 17.6 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|55379240|ref|YP_137090.1| - 0.0024 17.8 0.9 0.0028 17.6 0.9 1.2 1 0 0 1 1 1 1 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|55379240|ref|YP_137090.1| - 0.0089 15.5 4.4 0.72 9.4 0.8 2.2 1 1 1 2 2 2 2 TFIIB zinc-binding HypA PF01155.19 gi|55379240|ref|YP_137090.1| - 0.011 15.7 2.8 0.012 15.7 2.2 1.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YhfH PF14149.6 gi|55379240|ref|YP_137090.1| - 0.015 15.2 0.3 1 9.4 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-ribbon_3 PF13248.6 gi|55379240|ref|YP_137090.1| - 0.018 14.5 2.6 0.26 10.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|55379240|ref|YP_137090.1| - 0.019 14.6 0.7 4.2 7.1 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF983 PF06170.12 gi|55379240|ref|YP_137090.1| - 0.36 11.3 2.4 1.1 9.7 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-dskA_traR PF01258.17 gi|55379240|ref|YP_137090.1| - 0.95 9.5 8.1 4.4 7.3 2.2 2.4 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Polyketide_cyc2 PF10604.9 gi|55379241|ref|YP_137091.1| - 2.8e-06 27.7 2.6 1.2e-05 25.6 2.5 1.9 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|55379241|ref|YP_137091.1| - 0.092 13.0 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport CD20 PF04103.15 gi|55379243|ref|YP_137092.1| - 5.1 7.2 8.3 0.36 10.9 3.7 1.4 2 0 0 2 2 2 0 CD20-like family Cupin_2 PF07883.11 gi|55379244|ref|YP_137094.1| - 3.3e-13 49.1 0.1 4.2e-13 48.8 0.1 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|55379244|ref|YP_137094.1| - 0.00077 19.4 0.0 0.00089 19.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|55379244|ref|YP_137094.1| - 0.00096 19.1 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|55379244|ref|YP_137094.1| - 0.0022 17.6 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|55379244|ref|YP_137094.1| - 0.0066 16.3 0.0 0.0089 15.9 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain AraC_binding_2 PF14525.6 gi|55379244|ref|YP_137094.1| - 0.012 15.3 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Ppnp PF06865.11 gi|55379244|ref|YP_137094.1| - 0.019 15.3 0.0 0.024 15.1 0.0 1.1 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase AraC_N PF06719.13 gi|55379244|ref|YP_137094.1| - 0.054 13.2 0.0 0.068 12.8 0.0 1.2 1 0 0 1 1 1 0 AraC-type transcriptional regulator N-terminus Cupin_1 PF00190.22 gi|55379244|ref|YP_137094.1| - 0.068 12.8 0.0 0.079 12.6 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF21 PF01595.20 gi|55379245|ref|YP_137095.1| - 3.3e-49 167.0 2.1 4.7e-49 166.5 2.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|55379245|ref|YP_137095.1| - 3.3e-20 71.9 2.6 3.3e-20 71.9 2.6 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|55379245|ref|YP_137095.1| - 7.5e-13 48.7 5.8 2.1e-06 28.1 0.2 3.1 3 0 0 3 3 3 2 CBS domain PHB_acc_N PF07879.11 gi|55379245|ref|YP_137095.1| - 0.88 9.7 4.5 1.5 9.0 0.1 2.8 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain GST_N_3 PF13417.6 gi|55379246|ref|YP_137096.1| - 2.8e-14 53.3 0.0 3.2e-14 53.1 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|55379246|ref|YP_137096.1| - 7.5e-13 48.5 0.1 1.1e-12 47.9 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|55379246|ref|YP_137096.1| - 1.9e-12 47.3 0.0 2.2e-12 47.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|55379246|ref|YP_137096.1| - 0.00051 20.3 0.0 0.00061 20.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|55379246|ref|YP_137096.1| - 0.044 14.2 0.0 0.057 13.8 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Tom37 PF10568.9 gi|55379246|ref|YP_137096.1| - 0.13 12.6 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein AhpC-TSA PF00578.21 gi|55379247|ref|YP_137097.1| - 3e-14 53.0 0.0 3.6e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55379247|ref|YP_137097.1| - 1.9e-05 24.4 0.0 9.1e-05 22.2 0.0 1.9 1 1 0 1 1 1 1 Redoxin Sua5_yciO_yrdC PF01300.18 gi|55379248|ref|YP_137098.1| - 4.2e-48 163.2 0.0 4.9e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Img2 PF05046.14 gi|55379248|ref|YP_137098.1| - 0.16 12.3 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PDDEXK_1 PF12705.7 gi|55379249|ref|YP_137099.1| - 0.16 11.9 0.2 10 5.9 0.1 2.2 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily CCG PF02754.16 gi|55379251|ref|YP_137101.1| - 1.4e-17 63.7 0.0 8e-12 45.2 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4 PF00037.27 gi|55379251|ref|YP_137101.1| - 4.2e-10 39.0 11.2 4.5e-05 23.1 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|55379251|ref|YP_137101.1| - 9.2e-10 38.5 10.9 1e-07 32.0 10.7 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|55379251|ref|YP_137101.1| - 2.1e-09 37.4 7.4 2.7e-09 37.0 5.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|55379251|ref|YP_137101.1| - 2.6e-09 37.4 4.4 2.6e-09 37.4 4.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|55379251|ref|YP_137101.1| - 3.8e-08 33.8 8.8 3.8e-08 33.8 8.8 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|55379251|ref|YP_137101.1| - 6.4e-07 29.1 12.2 0.00048 20.1 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|55379251|ref|YP_137101.1| - 3.7e-05 24.6 11.5 0.00029 21.7 10.2 2.6 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|55379251|ref|YP_137101.1| - 8.1e-05 22.5 21.5 0.001 19.0 4.1 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|55379251|ref|YP_137101.1| - 0.00012 22.2 11.5 0.012 15.7 0.4 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|55379251|ref|YP_137101.1| - 0.0002 21.8 10.1 0.0002 21.8 10.1 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 gi|55379251|ref|YP_137101.1| - 0.00058 19.5 0.5 0.0011 18.5 0.5 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_4 PF12800.7 gi|55379251|ref|YP_137101.1| - 0.0033 17.8 18.6 0.0063 16.9 1.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|55379251|ref|YP_137101.1| - 0.01 16.6 7.9 0.097 13.5 0.4 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|55379251|ref|YP_137101.1| - 0.013 16.2 4.9 0.42 11.4 0.3 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Rib_5-P_isom_A PF06026.14 gi|55379251|ref|YP_137101.1| - 0.19 11.3 0.0 5.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Fer4_3 PF12798.7 gi|55379251|ref|YP_137101.1| - 0.32 12.0 24.6 0.33 12.0 5.1 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|55379251|ref|YP_137101.1| - 0.44 10.8 11.0 2.8 8.2 2.2 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|55379251|ref|YP_137101.1| - 5.8 7.5 19.3 2.8 8.6 3.1 3.3 4 0 0 4 4 2 0 4Fe-4S single cluster domain of Ferredoxin I TrkA_N PF02254.18 gi|55379252|ref|YP_137102.1| - 1.4e-27 96.3 3.5 2e-27 95.8 3.5 1.2 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|55379252|ref|YP_137102.1| - 7.5e-07 29.5 0.5 1.2e-06 28.9 0.5 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|55379252|ref|YP_137102.1| - 0.00016 21.9 0.6 0.00029 21.1 0.6 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|55379252|ref|YP_137102.1| - 0.0013 18.7 0.4 0.0021 18.0 0.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|55379252|ref|YP_137102.1| - 0.0046 16.5 0.2 0.0079 15.8 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain XdhC_C PF13478.6 gi|55379252|ref|YP_137102.1| - 0.0066 16.9 0.7 0.055 14.0 0.3 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_binding_2 PF03446.15 gi|55379252|ref|YP_137102.1| - 0.0085 16.3 0.2 0.015 15.5 0.2 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|55379252|ref|YP_137102.1| - 0.014 14.7 1.1 0.025 13.9 1.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|55379252|ref|YP_137102.1| - 0.021 14.9 0.6 0.089 12.9 0.2 2.0 1 1 1 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF4307 PF14155.6 gi|55379252|ref|YP_137102.1| - 2.5 8.0 11.2 0.89 9.4 0.6 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4307) MoCF_biosynth PF00994.24 gi|55379254|ref|YP_137104.1| - 6e-31 107.0 0.4 1.6e-30 105.7 0.2 1.7 2 0 0 2 2 2 1 Probable molybdopterin binding domain DUF218 PF02698.17 gi|55379254|ref|YP_137104.1| - 0.0067 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 DUF218 domain ALAD PF00490.21 gi|55379255|ref|YP_137105.1| - 3.8e-142 473.1 0.0 4.4e-142 472.9 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Plectin PF00681.20 gi|55379255|ref|YP_137105.1| - 0.13 12.1 0.1 4 7.4 0.0 2.8 3 0 0 3 3 3 0 Plectin repeat DUF4129 PF13559.6 gi|55379256|ref|YP_137106.1| - 1.1e-08 35.2 8.7 1.1e-08 35.2 8.7 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF58 PF01882.18 gi|55379257|ref|YP_137107.1| - 4.8e-18 65.2 0.5 1.2e-17 64.0 0.5 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|55379257|ref|YP_137107.1| - 1.2e-09 38.4 0.6 1.2e-09 38.4 0.6 3.0 3 1 0 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|55379257|ref|YP_137107.1| - 5.1e-05 23.4 2.5 0.0002 21.6 0.2 2.6 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|55379257|ref|YP_137107.1| - 0.00067 19.9 0.0 0.0017 18.6 0.0 1.6 1 0 0 1 1 1 1 CARDB Glyco_transf_4 PF13439.6 gi|55379257|ref|YP_137107.1| - 0.0014 18.7 1.7 0.81 9.7 0.4 2.7 2 0 0 2 2 2 2 Glycosyltransferase Family 4 TRAP_beta PF05753.14 gi|55379257|ref|YP_137107.1| - 0.079 12.3 0.0 0.18 11.1 0.0 1.5 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) Nepo_coat PF03391.15 gi|55379258|ref|YP_137108.1| - 3.2 7.2 7.9 0.37 10.3 1.7 2.0 1 1 1 2 2 2 0 Nepovirus coat protein, central domain PAS_4 PF08448.10 gi|55379259|ref|YP_137109.1| - 2.5e-14 53.4 1.3 5.5e-06 26.6 0.1 2.6 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|55379259|ref|YP_137109.1| - 5.4e-13 48.9 0.0 6.4e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|55379259|ref|YP_137109.1| - 2.9e-12 47.1 0.0 5.6e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|55379259|ref|YP_137109.1| - 1.8e-09 37.8 0.0 0.00018 21.7 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|55379259|ref|YP_137109.1| - 8.5e-09 35.6 0.0 0.00027 21.2 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|55379259|ref|YP_137109.1| - 1.2e-05 25.2 0.2 7.3e-05 22.7 0.1 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|55379259|ref|YP_137109.1| - 3.7e-05 23.7 0.5 0.00015 21.7 0.5 2.1 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|55379259|ref|YP_137109.1| - 0.069 13.3 0.1 6.8 6.9 0.0 3.4 4 0 0 4 4 4 0 PAS fold MCPsignal PF00015.21 gi|55379260|ref|YP_137110.1| - 8.2e-36 123.4 44.4 1.2e-35 122.9 25.5 4.0 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|55379260|ref|YP_137110.1| - 0.00048 20.4 9.1 2.6 8.4 0.1 5.0 4 1 0 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|55379260|ref|YP_137110.1| - 0.0007 19.6 14.0 0.098 12.7 0.9 4.3 2 2 1 4 4 4 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|55379260|ref|YP_137110.1| - 0.018 15.5 19.3 0.54 10.8 1.3 4.7 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein EcoEI_R_C PF08463.10 gi|55379260|ref|YP_137110.1| - 0.021 15.0 0.1 0.049 13.7 0.1 1.6 1 0 0 1 1 1 0 EcoEI R protein C-terminal Fib_alpha PF08702.10 gi|55379260|ref|YP_137110.1| - 0.04 14.1 4.1 12 6.0 0.2 3.3 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family RmuC PF02646.16 gi|55379260|ref|YP_137110.1| - 0.079 12.1 8.5 3.3 6.8 0.5 3.6 2 2 2 4 4 4 0 RmuC family HMMR_N PF15905.5 gi|55379260|ref|YP_137110.1| - 0.083 12.4 3.7 1 8.7 0.5 2.4 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor N-terminal DUF948 PF06103.11 gi|55379260|ref|YP_137110.1| - 0.11 12.7 20.3 0.13 12.6 3.9 4.1 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) PAXNEB PF05625.11 gi|55379260|ref|YP_137110.1| - 0.14 11.3 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 PAXNEB protein DASH_Dad2 PF08654.10 gi|55379260|ref|YP_137110.1| - 0.2 12.1 15.9 1.9 9.0 1.4 3.7 1 1 2 3 3 3 0 DASH complex subunit Dad2 IFT57 PF10498.9 gi|55379260|ref|YP_137110.1| - 0.23 10.4 3.4 1.3 7.9 0.5 2.5 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|55379260|ref|YP_137110.1| - 0.26 10.1 15.0 1.2 7.9 2.3 2.3 1 1 0 2 2 2 0 Spc7 kinetochore protein Not3 PF04065.15 gi|55379260|ref|YP_137110.1| - 0.48 9.8 8.7 0.4 10.1 1.0 2.3 1 1 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Sec34 PF04136.15 gi|55379260|ref|YP_137110.1| - 0.57 10.1 5.2 5.3 6.9 0.1 3.3 2 2 2 4 4 4 0 Sec34-like family Laminin_II PF06009.12 gi|55379260|ref|YP_137110.1| - 1.1 9.2 24.7 0.55 10.2 0.6 4.3 2 2 1 3 3 3 0 Laminin Domain II COG2 PF06148.11 gi|55379260|ref|YP_137110.1| - 1.8 8.6 9.7 14 5.8 0.3 3.8 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 APG17 PF04108.12 gi|55379260|ref|YP_137110.1| - 2.7 7.0 13.4 1.4 8.0 3.2 2.5 1 1 0 2 2 2 0 Autophagy protein Apg17 ATPase PF06745.13 gi|55379260|ref|YP_137110.1| - 3.3 7.0 11.2 1 8.6 0.1 3.5 3 1 1 5 5 5 0 KaiC Nup54 PF13874.6 gi|55379260|ref|YP_137110.1| - 3.5 7.7 9.4 19 5.3 1.4 3.3 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 Jnk-SapK_ap_N PF09744.9 gi|55379260|ref|YP_137110.1| - 3.9 7.7 9.6 10 6.3 0.3 3.2 2 1 0 3 3 3 0 JNK_SAPK-associated protein-1 CorA PF01544.18 gi|55379260|ref|YP_137110.1| - 4 6.7 12.0 3.5 6.8 1.4 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Seryl_tRNA_N PF02403.22 gi|55379260|ref|YP_137110.1| - 5.1 7.4 14.6 12 6.2 1.5 4.3 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain PRKG1_interact PF15898.5 gi|55379260|ref|YP_137110.1| - 5.2 8.0 5.1 25 5.8 1.1 3.0 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain DUF16 PF01519.16 gi|55379260|ref|YP_137110.1| - 6.1 7.4 8.5 28 5.2 0.3 3.8 2 2 1 3 3 3 0 Protein of unknown function DUF16 YkyA PF10368.9 gi|55379260|ref|YP_137110.1| - 6.4 6.4 14.5 5.8 6.6 0.8 3.2 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein Baculo_PEP_C PF04513.12 gi|55379260|ref|YP_137110.1| - 7.3 6.6 20.9 0.73 9.9 1.8 3.7 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TBCC_N PF16752.5 gi|55379260|ref|YP_137110.1| - 7.7 7.0 14.9 0.73 10.3 1.2 3.8 1 1 1 3 3 3 0 Tubulin-specific chaperone C N-terminal domain DUF3450 PF11932.8 gi|55379260|ref|YP_137110.1| - 9.6 5.4 24.5 5.3 6.3 0.6 3.3 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) Ammonium_transp PF00909.21 gi|55379261|ref|YP_137111.1| - 7.6e-99 331.1 43.8 8.8e-99 330.9 43.8 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|55379261|ref|YP_137111.1| - 0.024 14.5 0.3 0.024 14.5 0.3 2.7 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) P-II PF00543.22 gi|55379262|ref|YP_137112.1| - 8.9e-33 112.9 0.2 1e-32 112.7 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II HisG_C PF08029.11 gi|55379262|ref|YP_137112.1| - 0.096 12.8 0.8 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 HisG, C-terminal domain HTH_24 PF13412.6 gi|55379263|ref|YP_137113.1| - 1.1e-13 50.4 0.1 2.6e-13 49.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|55379263|ref|YP_137113.1| - 6.4e-12 45.1 2.2 1.1e-11 44.4 2.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|55379263|ref|YP_137113.1| - 2.6e-11 43.3 0.2 4.8e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|55379263|ref|YP_137113.1| - 1e-05 25.3 0.6 1.7e-05 24.6 0.6 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55379263|ref|YP_137113.1| - 0.00025 20.9 0.0 0.00045 20.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|55379263|ref|YP_137113.1| - 0.00056 19.8 0.1 0.0014 18.6 0.1 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|55379263|ref|YP_137113.1| - 0.00064 19.7 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55379263|ref|YP_137113.1| - 0.00085 19.1 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|55379263|ref|YP_137113.1| - 0.001 19.2 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|55379263|ref|YP_137113.1| - 0.001 18.5 0.2 0.0018 17.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 gi|55379263|ref|YP_137113.1| - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|55379263|ref|YP_137113.1| - 0.0019 18.7 0.2 0.041 14.4 0.1 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_38 PF13936.6 gi|55379263|ref|YP_137113.1| - 0.0019 17.9 0.1 0.0041 16.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_50 PF18024.1 gi|55379263|ref|YP_137113.1| - 0.0052 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|55379263|ref|YP_137113.1| - 0.0068 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|55379263|ref|YP_137113.1| - 0.011 15.7 0.2 0.041 13.8 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.6 gi|55379263|ref|YP_137113.1| - 0.013 15.3 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Crp PF00325.20 gi|55379263|ref|YP_137113.1| - 0.019 14.6 0.1 0.038 13.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Trp_repressor PF01371.19 gi|55379263|ref|YP_137113.1| - 0.02 15.0 0.1 0.05 13.7 0.0 1.6 2 0 0 2 2 2 0 Trp repressor protein HTH_9 PF08221.11 gi|55379263|ref|YP_137113.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2250 PF10007.9 gi|55379263|ref|YP_137113.1| - 0.09 12.9 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_7 PF02796.15 gi|55379263|ref|YP_137113.1| - 0.1 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_CodY PF08222.11 gi|55379263|ref|YP_137113.1| - 0.12 12.0 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_47 PF16221.5 gi|55379263|ref|YP_137113.1| - 0.14 11.8 0.2 0.24 11.0 0.2 1.4 1 0 0 1 1 1 0 winged helix-turn-helix HTH_36 PF13730.6 gi|55379263|ref|YP_137113.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain CheC PF04509.12 gi|55379264|ref|YP_137114.1| - 4.5e-12 45.7 0.6 8.1e-12 44.9 0.6 1.5 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|55379264|ref|YP_137114.1| - 0.0005 20.2 0.2 0.00076 19.6 0.2 1.3 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX FliM PF02154.15 gi|55379264|ref|YP_137114.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 Flagellar motor switch protein FliM Peripla_BP_6 PF13458.6 gi|55379265|ref|YP_137115.1| - 3.6e-60 204.5 7.5 4.8e-60 204.0 7.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|55379265|ref|YP_137115.1| - 6.5e-18 64.8 3.3 4e-17 62.3 3.3 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|55379265|ref|YP_137115.1| - 4.3e-07 29.3 0.2 5.9e-07 28.9 0.2 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region RNA_pol_Rpb2_45 PF10385.9 gi|55379265|ref|YP_137115.1| - 0.16 12.3 1.0 0.48 10.7 1.0 1.9 1 1 0 1 1 1 0 RNA polymerase beta subunit external 1 domain NIR_SIR PF01077.22 gi|55379266|ref|YP_137116.1| - 6.3e-46 155.8 0.1 1.3e-30 106.0 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|55379266|ref|YP_137116.1| - 1.6e-36 124.0 0.0 1e-16 60.5 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|55379266|ref|YP_137116.1| - 0.0023 18.0 0.0 0.052 13.7 0.0 2.4 2 0 0 2 2 2 1 DGC domain MFS_1 PF07690.16 gi|55379267|ref|YP_137117.1| - 1.7e-30 106.1 45.0 1.7e-30 106.1 45.0 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|55379267|ref|YP_137117.1| - 0.00089 18.2 12.7 0.17 10.7 12.7 3.3 1 1 0 1 1 1 1 MFS_1 like family Molybdopterin PF00384.22 gi|55379268|ref|YP_137118.1| - 4.2e-59 200.6 0.0 5.4e-59 200.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|55379268|ref|YP_137118.1| - 3.1e-18 65.8 0.0 7.1e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|55379268|ref|YP_137118.1| - 2.3e-08 33.9 1.3 3.8e-08 33.2 0.5 1.8 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Aminotran_3 PF00202.21 gi|55379269|ref|YP_137119.1| - 1.8e-68 231.1 0.0 2.3e-68 230.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|55379269|ref|YP_137119.1| - 0.01 15.0 0.0 0.012 14.9 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class I and II PAN_4 PF14295.6 gi|55379269|ref|YP_137119.1| - 0.15 12.0 0.3 0.32 10.9 0.3 1.5 1 0 0 1 1 1 0 PAN domain Neuregulin PF02158.15 gi|55379269|ref|YP_137119.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.1 1 0 0 1 1 1 0 Neuregulin intracellular region Pribosyltran_N PF13793.6 gi|55379271|ref|YP_137121.1| - 2.3e-23 82.3 0.0 3.4e-22 78.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|55379271|ref|YP_137121.1| - 1.1e-11 44.5 0.0 3.2e-11 43.0 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|55379271|ref|YP_137121.1| - 2.5e-07 30.9 0.6 9.4e-07 29.0 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|55379271|ref|YP_137121.1| - 0.00012 21.6 0.0 0.00023 20.7 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|55379271|ref|YP_137121.1| - 0.0024 17.4 0.8 0.081 12.4 0.2 2.4 2 1 1 3 3 3 1 Phosphoribosyl transferase RIO1 PF01163.22 gi|55379271|ref|YP_137121.1| - 0.17 11.5 0.0 0.46 10.1 0.0 1.6 2 0 0 2 2 2 0 RIO1 family Aldedh PF00171.22 gi|55379272|ref|YP_137122.1| - 2.3e-153 511.1 3.0 2.5e-153 510.9 3.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TubC_N PF18563.1 gi|55379272|ref|YP_137122.1| - 0.037 14.0 1.5 0.11 12.5 0.1 2.2 2 0 0 2 2 2 0 TubC N-terminal docking domain DUF4726 PF15855.5 gi|55379272|ref|YP_137122.1| - 0.076 13.2 0.2 0.2 11.9 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4726) Na_sulph_symp PF00939.19 gi|55379273|ref|YP_137123.1| - 7.9e-25 87.8 32.8 9.7e-25 87.5 32.8 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|55379273|ref|YP_137123.1| - 1.5e-14 53.9 32.3 3.5e-14 52.7 32.3 1.6 1 0 0 1 1 1 1 Citrate transporter MCPsignal PF00015.21 gi|55379274|ref|YP_137124.1| - 4.1e-40 137.4 53.6 7e-36 123.6 27.2 3.8 1 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|55379274|ref|YP_137124.1| - 5.7e-06 26.6 32.6 0.46 10.8 1.7 5.3 2 2 3 5 5 5 4 Biogenesis of lysosome-related organelles complex-1 subunit 2 CALCOCO1 PF07888.11 gi|55379274|ref|YP_137124.1| - 2.6e-05 23.3 32.5 0.0051 15.7 14.3 2.9 1 1 1 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like DUF1664 PF07889.12 gi|55379274|ref|YP_137124.1| - 4.5e-05 23.5 31.4 0.26 11.3 4.0 4.2 1 1 2 4 4 4 3 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|55379274|ref|YP_137124.1| - 0.00023 21.2 38.4 0.16 12.0 3.9 4.2 1 1 3 4 4 4 3 Laminin Domain II DUF948 PF06103.11 gi|55379274|ref|YP_137124.1| - 0.0014 18.8 44.2 1.4 9.3 6.9 5.0 2 2 3 5 5 5 4 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.8 gi|55379274|ref|YP_137124.1| - 0.0017 17.7 38.4 0.057 12.7 10.6 3.6 1 1 1 3 3 3 2 Protein of unknown function (DUF3450) Fzo_mitofusin PF04799.13 gi|55379274|ref|YP_137124.1| - 0.0083 15.7 1.3 0.0083 15.7 1.3 4.1 3 1 1 4 4 4 1 fzo-like conserved region Syntaxin_2 PF14523.6 gi|55379274|ref|YP_137124.1| - 0.0086 16.4 21.5 0.12 12.8 2.9 4.7 1 1 3 4 4 4 2 Syntaxin-like protein Spc7 PF08317.11 gi|55379274|ref|YP_137124.1| - 0.018 13.9 33.9 0.022 13.7 13.5 2.6 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF848 PF05852.11 gi|55379274|ref|YP_137124.1| - 0.024 14.7 2.5 0.024 14.7 2.5 4.1 1 1 3 4 4 4 0 Gammaherpesvirus protein of unknown function (DUF848) Shugoshin_N PF07558.11 gi|55379274|ref|YP_137124.1| - 0.029 14.2 1.8 0.25 11.2 0.9 2.6 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region EzrA PF06160.12 gi|55379274|ref|YP_137124.1| - 0.063 11.4 26.0 0.24 9.5 5.8 2.7 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA GAS PF13851.6 gi|55379274|ref|YP_137124.1| - 0.065 12.6 20.1 0.14 11.4 0.9 3.5 2 2 0 3 3 3 0 Growth-arrest specific micro-tubule binding KxDL PF10241.9 gi|55379274|ref|YP_137124.1| - 0.079 13.2 12.4 11 6.4 0.1 4.4 2 2 1 4 4 4 0 Uncharacterized conserved protein Fib_alpha PF08702.10 gi|55379274|ref|YP_137124.1| - 0.11 12.7 24.5 0.8 9.9 2.6 3.7 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family TMPIT PF07851.13 gi|55379274|ref|YP_137124.1| - 0.12 11.6 19.0 0.36 10.0 3.9 2.9 1 1 2 3 3 3 0 TMPIT-like protein FlgN PF05130.12 gi|55379274|ref|YP_137124.1| - 0.13 12.7 29.5 0.11 13.0 12.2 2.9 1 1 2 3 3 3 0 FlgN protein TRPM_tetra PF16519.5 gi|55379274|ref|YP_137124.1| - 0.17 12.0 5.2 0.35 11.0 0.3 3.8 3 1 1 4 4 4 0 Tetramerisation domain of TRPM ZapB PF06005.12 gi|55379274|ref|YP_137124.1| - 0.17 12.3 25.4 6.4 7.3 0.0 4.9 2 2 2 4 4 4 0 Cell division protein ZapB HAP1_N PF04849.13 gi|55379274|ref|YP_137124.1| - 0.2 10.9 27.5 0.012 14.8 7.6 2.8 2 1 0 2 2 2 0 HAP1 N-terminal conserved region CENP-K PF11802.8 gi|55379274|ref|YP_137124.1| - 0.2 11.2 13.9 0.04 13.5 2.5 2.5 1 1 0 2 2 2 0 Centromere-associated protein K CENP-F_leu_zip PF10473.9 gi|55379274|ref|YP_137124.1| - 0.24 11.4 26.5 1.5 8.8 10.2 3.6 1 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Serine_rich PF08824.10 gi|55379274|ref|YP_137124.1| - 0.28 11.2 19.6 0.56 10.2 4.3 3.9 2 2 2 4 4 4 0 Serine rich protein interaction domain RPW8 PF05659.11 gi|55379274|ref|YP_137124.1| - 0.39 10.4 9.8 8.7 6.0 0.8 4.2 2 2 3 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Occludin_ELL PF07303.13 gi|55379274|ref|YP_137124.1| - 0.42 11.4 9.7 13 6.6 0.2 4.7 1 1 4 5 5 5 0 Occludin homology domain ING PF12998.7 gi|55379274|ref|YP_137124.1| - 0.43 11.2 13.2 1.8 9.2 0.8 3.5 1 1 2 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding NPV_P10 PF05531.12 gi|55379274|ref|YP_137124.1| - 0.52 10.8 37.5 0.68 10.4 2.9 5.5 2 2 2 4 4 3 0 Nucleopolyhedrovirus P10 protein DUF713 PF05218.14 gi|55379274|ref|YP_137124.1| - 0.53 10.0 8.9 0.87 9.3 2.1 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF713) DUF4618 PF15397.6 gi|55379274|ref|YP_137124.1| - 0.69 9.3 25.8 0.7 9.3 8.4 3.1 2 2 0 2 2 2 0 Domain of unknown function (DUF4618) HAMP PF00672.25 gi|55379274|ref|YP_137124.1| - 0.79 10.2 14.7 0.19 12.1 0.9 4.8 3 2 0 3 3 3 0 HAMP domain FUSC PF04632.12 gi|55379274|ref|YP_137124.1| - 0.87 8.0 22.8 0.19 10.2 6.8 2.2 1 1 0 1 1 1 0 Fusaric acid resistance protein family Sec5 PF15469.6 gi|55379274|ref|YP_137124.1| - 0.89 9.3 9.4 4.6 7.0 8.0 2.6 1 1 0 1 1 1 0 Exocyst complex component Sec5 AAA_13 PF13166.6 gi|55379274|ref|YP_137124.1| - 0.96 8.0 30.3 66 1.9 30.3 2.5 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|55379274|ref|YP_137124.1| - 0.99 6.8 32.1 0.28 8.6 11.7 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) DUF4559 PF15112.6 gi|55379274|ref|YP_137124.1| - 1.1 8.9 26.5 0.44 10.2 8.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) Snapin_Pallidin PF14712.6 gi|55379274|ref|YP_137124.1| - 1.5 9.3 24.3 1.3 9.5 3.2 5.1 2 2 3 5 5 5 0 Snapin/Pallidin Sec34 PF04136.15 gi|55379274|ref|YP_137124.1| - 2 8.3 24.4 5.1 7.0 1.4 4.5 2 2 1 3 3 3 0 Sec34-like family Golgin_A5 PF09787.9 gi|55379274|ref|YP_137124.1| - 2.2 7.7 33.4 0.61 9.5 8.9 3.1 1 1 2 3 3 3 0 Golgin subfamily A member 5 Syntaxin-6_N PF09177.11 gi|55379274|ref|YP_137124.1| - 2.8 8.6 29.2 1.2e+02 3.4 9.7 4.5 2 2 0 2 2 2 0 Syntaxin 6, N-terminal Fez1 PF06818.15 gi|55379274|ref|YP_137124.1| - 3 8.2 25.6 0.66 10.4 6.0 2.6 1 1 2 3 3 3 0 Fez1 HOOK PF05622.12 gi|55379274|ref|YP_137124.1| - 3.1 5.8 28.0 0.57 8.3 18.0 2.1 1 1 1 2 2 2 0 HOOK protein AIP3 PF03915.13 gi|55379274|ref|YP_137124.1| - 3.7 6.5 28.9 2.1e+03 -2.6 28.9 2.5 1 1 0 1 1 1 0 Actin interacting protein 3 bZIP_1 PF00170.21 gi|55379274|ref|YP_137124.1| - 3.8 7.7 9.9 14 5.8 0.2 4.7 4 1 2 6 6 6 0 bZIP transcription factor FlaC_arch PF05377.11 gi|55379274|ref|YP_137124.1| - 3.8 8.0 26.8 9.6 6.7 0.3 6.5 3 3 2 6 6 6 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.22 gi|55379274|ref|YP_137124.1| - 4.1 7.7 27.0 2.5 8.4 2.0 4.8 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain HMMR_N PF15905.5 gi|55379274|ref|YP_137124.1| - 4.9 6.5 28.7 0.65 9.4 11.8 2.4 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal CorA PF01544.18 gi|55379274|ref|YP_137124.1| - 5 6.3 23.1 4.1 6.6 7.0 3.0 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF812 PF05667.11 gi|55379274|ref|YP_137124.1| - 5.9 5.7 34.8 6.1 5.6 12.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF812) CREPT PF16566.5 gi|55379274|ref|YP_137124.1| - 7.6 6.7 16.4 5.8 7.1 1.9 3.8 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour Goodbye PF17109.5 gi|55379274|ref|YP_137124.1| - 7.6 7.0 15.5 4.7 7.7 1.1 4.0 2 2 1 3 3 3 0 fungal STAND N-terminal Goodbye domain Prominin PF05478.11 gi|55379274|ref|YP_137124.1| - 8.1 4.3 22.2 1.6 6.5 6.8 2.6 1 1 2 3 3 3 0 Prominin FH2 PF02181.23 gi|55379274|ref|YP_137124.1| - 9.1 5.3 15.8 1.7 7.7 4.0 2.7 1 1 0 2 2 2 0 Formin Homology 2 Domain Barstar PF01337.18 gi|55379274|ref|YP_137124.1| - 10 6.3 8.2 4.4 7.4 0.2 3.6 2 1 1 4 4 4 0 Barstar (barnase inhibitor) tRNA-synt_1 PF00133.22 gi|55379275|ref|YP_137125.1| - 8.2e-173 575.9 3.5 1.1e-172 575.5 3.5 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|55379275|ref|YP_137125.1| - 9.6e-30 103.5 0.0 1.9e-29 102.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|55379275|ref|YP_137125.1| - 4.6e-26 91.5 1.1 2e-10 40.0 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|55379275|ref|YP_137125.1| - 0.00042 19.8 0.0 0.14 11.5 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|55379275|ref|YP_137125.1| - 0.0012 18.4 0.0 0.0051 16.3 0.0 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 UDG PF03167.19 gi|55379276|ref|YP_137126.1| - 1.2e-38 132.6 0.0 1.7e-38 132.0 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HIT PF01230.23 gi|55379277|ref|YP_137127.1| - 7.9e-27 93.9 0.0 8.9e-26 90.5 0.0 1.9 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|55379277|ref|YP_137127.1| - 4.8e-13 49.6 0.0 6e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|55379277|ref|YP_137127.1| - 0.013 15.4 0.1 0.022 14.6 0.1 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 AAA_31 PF13614.6 gi|55379278|ref|YP_137128.1| - 6.1e-09 36.0 0.0 8e-09 35.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|55379278|ref|YP_137128.1| - 6.3e-08 32.4 1.3 2.7e-07 30.3 1.3 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|55379278|ref|YP_137128.1| - 4.3e-05 22.9 1.3 0.078 12.2 0.4 2.1 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|55379278|ref|YP_137128.1| - 7.2e-05 22.4 0.1 0.18 11.2 0.6 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|55379278|ref|YP_137128.1| - 0.0002 21.4 0.0 0.00033 20.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Usp PF00582.26 gi|55379279|ref|YP_137129.1| - 0.00024 21.6 2.1 0.0025 18.3 2.1 2.2 1 1 0 1 1 1 1 Universal stress protein family RNase_H_2 PF13482.6 gi|55379280|ref|YP_137130.1| - 4.1e-15 56.1 0.0 4.5e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 RNase_H superfamily UPF0547 PF10571.9 gi|55379281|ref|YP_137131.1| - 0.015 15.4 5.7 0.098 12.8 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|55379281|ref|YP_137131.1| - 0.016 15.3 2.3 1.6 8.9 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|55379281|ref|YP_137131.1| - 0.057 13.1 3.0 0.95 9.2 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|55379281|ref|YP_137131.1| - 0.17 11.9 1.4 9.1 6.4 0.2 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.8 gi|55379281|ref|YP_137131.1| - 0.17 11.8 6.2 0.79 9.7 0.3 2.2 1 1 2 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ACC PF17848.1 gi|55379281|ref|YP_137131.1| - 0.19 11.8 1.0 17 5.6 0.2 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-WRNIP1_ubi PF18279.1 gi|55379281|ref|YP_137131.1| - 0.22 12.3 2.8 0.3 11.8 0.4 2.0 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain zinc_ribbon_5 PF13719.6 gi|55379281|ref|YP_137131.1| - 0.28 11.0 2.2 8.8 6.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF3006 PF11213.8 gi|55379282|ref|YP_137132.1| - 3.2e-14 52.9 2.0 3.8e-14 52.6 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) LTD PF00932.19 gi|55379283|ref|YP_137133.1| - 4.5e-22 78.5 0.6 4.5e-22 78.5 0.6 2.5 2 1 0 2 2 2 1 Lamin Tail Domain Lactamase_B PF00753.27 gi|55379283|ref|YP_137133.1| - 7.6e-13 48.9 2.8 7.6e-13 48.9 2.8 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55379283|ref|YP_137133.1| - 1.7e-06 27.7 0.6 4e-06 26.5 0.2 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|55379283|ref|YP_137133.1| - 0.0061 16.0 0.0 0.0093 15.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Rhomboid PF01694.22 gi|55379284|ref|YP_137134.1| - 1.9e-21 76.7 13.9 2.9e-21 76.0 13.9 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|55379284|ref|YP_137134.1| - 5e-05 23.8 0.4 0.00011 22.7 0.0 1.8 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DUF123 PF01986.16 gi|55379285|ref|YP_137135.1| - 4.1e-31 107.3 0.0 5.6e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA-synt_1 PF00133.22 gi|55379286|ref|YP_137136.1| - 5.2e-62 210.0 0.0 2.2e-26 92.3 0.1 5.0 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|55379286|ref|YP_137136.1| - 3.3e-54 183.2 0.0 5.6e-54 182.5 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|55379286|ref|YP_137136.1| - 5.6e-33 114.2 0.0 7.1e-25 87.6 0.0 3.8 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|55379286|ref|YP_137136.1| - 1.8e-12 47.4 0.0 4.2e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|55379286|ref|YP_137136.1| - 0.0008 18.4 0.0 0.081 11.8 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|55379286|ref|YP_137136.1| - 0.006 16.0 0.0 2.6 7.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-ribbon_3 PF13248.6 gi|55379286|ref|YP_137136.1| - 0.0079 15.6 6.5 5.5 6.5 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain DZR PF12773.7 gi|55379286|ref|YP_137136.1| - 0.014 15.4 2.6 3 8.0 0.2 2.6 2 0 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|55379286|ref|YP_137136.1| - 0.015 15.3 1.1 0.73 9.9 0.0 2.9 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|55379286|ref|YP_137136.1| - 0.22 11.1 9.6 1.7 8.3 0.1 4.1 4 0 0 4 4 4 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|55379286|ref|YP_137136.1| - 0.36 11.0 6.6 0.92 9.7 0.1 3.7 4 0 0 4 4 4 0 Zinc ribbon domain BPD_transp_2 PF02653.16 gi|55379287|ref|YP_137137.1| - 2.5e-34 118.7 33.3 2.5e-34 118.7 33.3 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|55379288|ref|YP_137138.1| - 7.1e-46 156.5 32.1 7.1e-46 156.5 32.1 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|55379289|ref|YP_137139.1| - 1.1e-06 29.2 0.0 1.7e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_tran PF00005.27 gi|55379290|ref|YP_137140.1| - 2e-31 109.3 0.4 3.7e-29 102.0 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|55379290|ref|YP_137140.1| - 3.1e-10 40.4 0.2 0.00013 22.0 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|55379290|ref|YP_137140.1| - 4.1e-05 23.4 0.3 0.015 15.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|55379290|ref|YP_137140.1| - 4.6e-05 23.3 0.0 0.21 11.3 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain Bac_DnaA PF00308.18 gi|55379290|ref|YP_137140.1| - 0.0001 22.2 0.8 0.00035 20.5 0.1 1.9 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_23 PF13476.6 gi|55379290|ref|YP_137140.1| - 0.00095 19.7 0.0 0.0013 19.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|55379290|ref|YP_137140.1| - 0.0018 17.8 0.0 1.7 8.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|55379290|ref|YP_137140.1| - 0.0039 16.9 0.0 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|55379290|ref|YP_137140.1| - 0.0083 16.1 0.1 0.019 14.9 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase IstB_IS21 PF01695.17 gi|55379290|ref|YP_137140.1| - 0.028 14.2 0.4 0.57 9.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|55379290|ref|YP_137140.1| - 0.031 13.9 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|55379290|ref|YP_137140.1| - 0.032 14.5 0.6 0.36 11.1 0.6 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|55379290|ref|YP_137140.1| - 0.039 14.0 0.0 0.081 13.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|55379290|ref|YP_137140.1| - 0.072 12.7 0.2 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|55379290|ref|YP_137140.1| - 0.083 13.3 0.0 0.19 12.1 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|55379290|ref|YP_137140.1| - 0.16 11.7 0.1 2.2 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|55379290|ref|YP_137140.1| - 0.17 10.7 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Bmp PF02608.14 gi|55379291|ref|YP_137141.1| - 4.2e-56 190.1 8.6 7.3e-56 189.4 8.6 1.3 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like PHO4 PF01384.20 gi|55379292|ref|YP_137142.1| - 5.5e-36 124.3 29.7 7.1e-36 123.9 29.7 1.1 1 0 0 1 1 1 1 Phosphate transporter family DUF1206 PF06724.11 gi|55379292|ref|YP_137142.1| - 0.0099 15.9 6.8 0.0099 15.9 6.8 4.9 4 1 0 4 4 4 1 Domain of Unknown Function (DUF1206) L6_membrane PF05805.12 gi|55379292|ref|YP_137142.1| - 0.85 9.2 6.8 0.21 11.1 0.3 2.6 2 1 0 2 2 2 0 L6 membrane protein Usp PF00582.26 gi|55379293|ref|YP_137143.1| - 6e-28 98.1 2.9 6.7e-28 98.0 2.9 1.0 1 0 0 1 1 1 1 Universal stress protein family baeRF_family10 PF18854.1 gi|55379293|ref|YP_137143.1| - 0.026 14.8 0.8 0.038 14.2 0.8 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 MRFAP1 PF15155.6 gi|55379293|ref|YP_137143.1| - 0.037 14.6 0.2 0.055 14.0 0.2 1.3 1 0 0 1 1 1 0 MORF4 family-associated protein1 DAGK_cat PF00781.24 gi|55379293|ref|YP_137143.1| - 0.047 13.3 0.8 0.067 12.8 0.8 1.2 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain IMP_cyclohyd PF07826.11 gi|55379294|ref|YP_137144.1| - 3.1e-65 219.4 0.0 3.6e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.7 gi|55379295|ref|YP_137145.1| - 1.1e-26 93.9 1.0 1.5e-26 93.6 1.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55379295|ref|YP_137145.1| - 2.4e-09 38.0 2.2 7.9e-09 36.3 2.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|55379295|ref|YP_137145.1| - 0.019 14.3 0.1 0.042 13.2 0.1 1.6 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Fer2 PF00111.27 gi|55379296|ref|YP_137146.1| - 6.7e-13 48.4 0.0 1e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|55379296|ref|YP_137146.1| - 0.074 13.1 0.4 0.5 10.5 0.4 2.0 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain AA_kinase PF00696.28 gi|55379297|ref|YP_137147.1| - 1.4e-45 155.8 2.6 2.1e-45 155.2 2.6 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|55379297|ref|YP_137147.1| - 1.3e-16 60.1 0.1 2.9e-07 30.2 0.1 2.8 3 0 0 3 3 3 2 ACT domain ACT PF01842.25 gi|55379297|ref|YP_137147.1| - 4.7e-06 26.3 0.9 2.5e-05 24.0 0.1 2.7 3 0 0 3 3 3 1 ACT domain DUF2007 PF09413.10 gi|55379297|ref|YP_137147.1| - 3.2e-05 24.0 0.4 3.1 8.0 0.0 3.9 3 0 0 3 3 3 3 Putative prokaryotic signal transducing protein ACT_4 PF13291.6 gi|55379297|ref|YP_137147.1| - 0.096 13.3 0.0 0.36 11.5 0.0 2.0 1 0 0 1 1 1 0 ACT domain Acetyltransf_10 PF13673.7 gi|55379298|ref|YP_137148.1| - 0.049 13.6 0.0 0.091 12.7 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain YndJ PF14158.6 gi|55379299|ref|YP_137149.1| - 3.4e-72 242.9 34.9 3.4e-72 242.9 34.9 1.7 1 1 1 2 2 2 1 YndJ-like protein DUF4166 PF13761.6 gi|55379300|ref|YP_137150.1| - 3e-36 124.9 0.1 3.4e-36 124.7 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) PALP PF00291.25 gi|55379301|ref|YP_137151.1| - 5.6e-70 236.1 2.9 7.9e-70 235.6 2.9 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme RNA_pol_Rpb2_4 PF04566.13 gi|55379301|ref|YP_137151.1| - 0.13 12.5 0.0 1.7 9.0 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 Uso1_p115_head PF04869.14 gi|55379301|ref|YP_137151.1| - 0.3 10.2 0.0 0.44 9.6 0.0 1.1 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region TrmB PF01978.19 gi|55379302|ref|YP_137152.1| - 2.1e-14 53.1 0.0 2.7e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55379302|ref|YP_137152.1| - 1.7e-06 27.8 0.3 2.7e-06 27.1 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55379302|ref|YP_137152.1| - 2.2e-05 24.4 0.2 3.1e-05 23.9 0.2 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|55379302|ref|YP_137152.1| - 2.6e-05 23.7 0.1 4.5e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|55379302|ref|YP_137152.1| - 7.2e-05 22.5 1.8 0.00014 21.6 0.4 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|55379302|ref|YP_137152.1| - 0.00012 21.9 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|55379302|ref|YP_137152.1| - 0.00013 21.6 0.3 0.00025 20.6 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|55379302|ref|YP_137152.1| - 0.00015 21.6 0.1 0.00022 21.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|55379302|ref|YP_137152.1| - 0.0013 18.6 0.3 0.0021 18.0 0.3 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|55379302|ref|YP_137152.1| - 0.0022 18.0 0.3 0.0045 17.0 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|55379302|ref|YP_137152.1| - 0.0044 16.9 0.0 0.005 16.7 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|55379302|ref|YP_137152.1| - 0.03 14.8 0.1 0.06 13.9 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|55379302|ref|YP_137152.1| - 0.047 13.7 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|55379302|ref|YP_137152.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Pribosyltran PF00156.27 gi|55379303|ref|YP_137153.1| - 3.9e-07 29.7 0.0 7.9e-07 28.7 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain adh_short PF00106.25 gi|55379304|ref|YP_137154.1| - 1.6e-49 168.1 0.1 2.2e-49 167.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55379304|ref|YP_137154.1| - 9.6e-41 139.9 0.1 1.2e-40 139.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55379304|ref|YP_137154.1| - 2e-18 66.9 0.2 3.1e-18 66.3 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55379304|ref|YP_137154.1| - 3.7e-06 26.6 0.7 1.1e-05 25.1 0.3 1.9 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|55379304|ref|YP_137154.1| - 6.4e-06 26.2 5.4 1.4e-05 25.1 5.4 1.7 1 1 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|55379304|ref|YP_137154.1| - 0.00058 20.1 0.3 0.001 19.4 0.3 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Polysacc_synt_2 PF02719.15 gi|55379304|ref|YP_137154.1| - 0.0019 17.4 0.0 0.0026 16.9 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|55379304|ref|YP_137154.1| - 0.0031 17.0 0.0 0.0045 16.4 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase YjeF_N PF03853.15 gi|55379304|ref|YP_137154.1| - 0.012 15.5 0.1 0.019 14.8 0.1 1.2 1 0 0 1 1 1 0 YjeF-related protein N-terminus ApbA PF02558.16 gi|55379304|ref|YP_137154.1| - 0.017 14.8 0.1 0.03 14.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|55379304|ref|YP_137154.1| - 0.026 15.0 0.5 0.056 13.9 0.5 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Glyco_trans_4_4 PF13579.6 gi|55379304|ref|YP_137154.1| - 0.053 14.0 2.6 0.65 10.4 2.6 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain F420_oxidored PF03807.17 gi|55379304|ref|YP_137154.1| - 0.088 13.4 0.1 0.21 12.2 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 gi|55379304|ref|YP_137154.1| - 0.098 12.2 1.9 0.15 11.6 1.9 1.3 1 0 0 1 1 1 0 NmrA-like family Shikimate_DH PF01488.20 gi|55379304|ref|YP_137154.1| - 0.1 12.7 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|55379304|ref|YP_137154.1| - 0.11 12.4 0.3 0.2 11.5 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|55379304|ref|YP_137154.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus OTCace_N PF02729.21 gi|55379305|ref|YP_137155.1| - 1.1e-50 171.5 0.0 1.7e-50 170.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|55379305|ref|YP_137155.1| - 1.4e-46 158.5 0.0 2.6e-46 157.5 0.0 1.5 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.28 gi|55379306|ref|YP_137156.1| - 5.6e-24 85.0 0.1 7.4e-24 84.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|55379306|ref|YP_137156.1| - 1.7e-05 24.7 0.0 2.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Aminotran_3 PF00202.21 gi|55379307|ref|YP_137157.1| - 9.2e-107 357.2 0.0 1.1e-106 356.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III AA_kinase PF00696.28 gi|55379308|ref|YP_137158.1| - 1.8e-36 125.9 2.1 2.2e-36 125.7 2.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|55379309|ref|YP_137159.1| - 1.1e-26 93.6 0.0 2.1e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|55379309|ref|YP_137159.1| - 3.1e-07 30.6 0.0 5.8e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|55379309|ref|YP_137159.1| - 0.15 12.2 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.11 gi|55379310|ref|YP_137160.1| - 7.4e-19 68.1 0.0 5.7e-17 61.9 0.0 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|55379310|ref|YP_137160.1| - 3.7e-09 36.2 0.0 5.9e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|55379310|ref|YP_137160.1| - 8e-08 32.5 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|55379310|ref|YP_137160.1| - 4.6e-05 23.0 0.0 0.00059 19.4 0.0 2.4 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|55379310|ref|YP_137160.1| - 9.2e-05 22.0 0.0 0.00052 19.6 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|55379310|ref|YP_137160.1| - 0.00083 19.0 0.0 0.0023 17.5 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain V_ATPase_I PF01496.19 gi|55379310|ref|YP_137160.1| - 0.074 11.0 0.1 0.1 10.5 0.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Rimk_N PF18030.1 gi|55379310|ref|YP_137160.1| - 0.14 12.5 0.0 0.44 11.0 0.0 1.9 1 0 0 1 1 1 0 RimK PreATP-grasp domain ATPgrasp_ST PF14397.6 gi|55379310|ref|YP_137160.1| - 0.18 11.0 0.0 0.5 9.6 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp DNA_RNApol_7kD PF03604.13 gi|55379311|ref|YP_137161.1| - 0.0014 18.3 1.9 0.012 15.3 1.8 2.0 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|55379311|ref|YP_137161.1| - 0.0021 18.0 1.2 0.0081 16.1 1.2 1.8 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|55379311|ref|YP_137161.1| - 0.028 14.5 0.3 0.39 10.8 0.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|55379311|ref|YP_137161.1| - 0.031 14.6 0.5 0.042 14.2 0.5 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.19 gi|55379311|ref|YP_137161.1| - 0.039 14.0 0.2 0.042 13.9 0.2 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|55379311|ref|YP_137161.1| - 0.057 13.5 0.1 1.8 8.6 0.0 2.0 2 0 0 2 2 2 0 CpXC protein TackOD1 PF18551.1 gi|55379311|ref|YP_137161.1| - 0.12 12.1 0.1 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 RNA_POL_M_15KD PF02150.16 gi|55379311|ref|YP_137161.1| - 0.12 12.3 1.4 0.52 10.2 1.4 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit ADD_ATRX PF17981.1 gi|55379311|ref|YP_137161.1| - 0.16 11.8 0.5 0.83 9.6 0.1 1.9 1 1 1 2 2 2 0 Cysteine Rich ADD domain Zn-ribbon_8 PF09723.10 gi|55379311|ref|YP_137161.1| - 0.17 12.0 1.1 0.55 10.4 1.2 1.8 1 1 1 2 2 2 0 Zinc ribbon domain Lyase_1 PF00206.20 gi|55379312|ref|YP_137162.1| - 1.4e-52 179.1 0.0 2.2e-52 178.4 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|55379312|ref|YP_137162.1| - 3.2e-15 56.6 0.5 1.2e-14 54.8 0.5 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Arginosuc_synth PF00764.19 gi|55379313|ref|YP_137163.1| - 1.4e-146 488.7 0.0 1.7e-146 488.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|55379313|ref|YP_137163.1| - 1.3e-06 28.1 0.0 2.2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|55379313|ref|YP_137163.1| - 0.00022 21.0 0.0 0.00038 20.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|55379313|ref|YP_137163.1| - 0.00084 18.2 0.0 0.0012 17.7 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|55379313|ref|YP_137163.1| - 0.00087 18.5 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase HTH_Tnp_ISL3 PF13542.6 gi|55379314|ref|YP_137164.1| - 0.072 12.5 0.1 0.15 11.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 UPF0242 PF06785.11 gi|55379314|ref|YP_137164.1| - 0.087 12.9 4.3 0.12 12.4 4.3 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus MukB PF04310.12 gi|55379314|ref|YP_137164.1| - 0.12 12.1 0.2 0.17 11.7 0.2 1.2 1 0 0 1 1 1 0 MukB N-terminal PA26 PF04636.13 gi|55379314|ref|YP_137164.1| - 0.16 10.8 2.3 0.21 10.5 2.3 1.1 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) AAA_13 PF13166.6 gi|55379314|ref|YP_137164.1| - 0.44 9.1 5.6 0.58 8.7 5.6 1.1 1 0 0 1 1 1 0 AAA domain SOSSC PF15925.5 gi|55379314|ref|YP_137164.1| - 2.1 9.7 6.6 1.8 9.9 2.9 2.5 2 1 0 2 2 2 0 SOSS complex subunit C DUF4897 PF16238.5 gi|55379315|ref|YP_137165.1| - 0.014 15.3 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) DUF5362 PF17319.2 gi|55379316|ref|YP_137166.1| - 0.27 11.1 7.3 0.23 11.3 1.2 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5362) DUF2116 PF09889.9 gi|55379316|ref|YP_137166.1| - 1.4 9.0 7.2 3.7 7.6 1.4 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2207 PF09972.9 gi|55379316|ref|YP_137166.1| - 1.4 7.5 4.8 1.4 7.6 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2873 PF11395.8 gi|55379316|ref|YP_137166.1| - 5.2 7.0 12.4 5.8 6.9 2.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2873) DUF4191 PF13829.6 gi|55379316|ref|YP_137166.1| - 8 5.7 7.7 8.5 5.6 7.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Phlebovirus_G2 PF07245.11 gi|55379316|ref|YP_137166.1| - 9.4 4.6 5.6 10 4.5 5.6 1.2 1 0 0 1 1 1 0 Phlebovirus glycoprotein G2 2_5_RNA_ligase2 PF13563.6 gi|55379317|ref|YP_137167.1| - 1.3e-05 25.1 0.0 1.5e-05 24.9 0.0 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|55379317|ref|YP_137167.1| - 0.00099 19.3 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 LigT like Phosphoesterase DUF296 PF03479.15 gi|55379318|ref|YP_137168.1| - 9.5e-20 71.0 0.0 1.1e-19 70.7 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain PolC_DP2 PF03833.13 gi|55379319|ref|YP_137169.1| - 0 1333.8 0.0 0 1333.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|55379319|ref|YP_137169.1| - 3.6e-06 26.9 0.0 8.4e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain zinc-ribbons_6 PF07191.12 gi|55379319|ref|YP_137169.1| - 0.0036 17.3 12.4 0.087 12.8 9.2 2.4 2 0 0 2 2 2 1 zinc-ribbons DUF3268 PF11672.8 gi|55379319|ref|YP_137169.1| - 0.35 11.2 2.0 0.83 10.0 2.0 1.6 1 0 0 1 1 1 0 zinc-finger-containing domain HypA PF01155.19 gi|55379319|ref|YP_137169.1| - 0.41 10.7 19.6 1.5 8.9 0.3 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sigma70_ner PF04546.13 gi|55379319|ref|YP_137169.1| - 0.89 9.4 4.3 3.2 7.6 4.3 1.9 1 0 0 1 1 1 0 Sigma-70, non-essential region DZR PF12773.7 gi|55379319|ref|YP_137169.1| - 1.7 8.8 18.4 16 5.6 0.3 2.9 2 1 0 2 2 2 0 Double zinc ribbon zf-C2H2 PF00096.26 gi|55379319|ref|YP_137169.1| - 2.9 8.5 4.8 16 6.2 0.0 3.6 3 0 0 3 3 3 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|55379319|ref|YP_137169.1| - 5.7 7.1 21.1 0.62 10.2 1.1 3.1 2 1 0 2 2 2 0 Zinc ribbon domain Nop10p PF04135.12 gi|55379319|ref|YP_137169.1| - 6.4 6.9 8.3 18 5.5 0.0 3.5 4 0 0 4 4 4 0 Nucleolar RNA-binding protein, Nop10p family PAS_9 PF13426.7 gi|55379320|ref|YP_137170.1| - 5.4e-17 61.9 0.0 1.1e-15 57.8 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|55379320|ref|YP_137170.1| - 1.4e-16 60.5 0.1 2e-15 56.8 0.0 2.7 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|55379320|ref|YP_137170.1| - 1.3e-14 54.7 0.0 2.4e-14 53.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55379320|ref|YP_137170.1| - 2.3e-14 53.6 0.7 3.1e-13 50.0 0.2 2.8 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|55379320|ref|YP_137170.1| - 2.4e-10 40.9 1.2 6.1e-10 39.5 0.3 2.3 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|55379320|ref|YP_137170.1| - 1.9e-09 37.3 0.0 1.7e-06 27.9 0.0 3.0 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|55379320|ref|YP_137170.1| - 5.3e-08 33.0 0.0 6.9e-07 29.5 0.0 2.6 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|55379320|ref|YP_137170.1| - 7.7e-08 32.3 1.9 1.2e-07 31.7 0.2 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|55379320|ref|YP_137170.1| - 0.00051 20.7 0.0 0.0021 18.7 0.0 2.2 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|55379320|ref|YP_137170.1| - 0.016 15.3 0.0 0.22 11.7 0.0 2.7 1 1 0 1 1 1 0 PAS fold HATPase_c_2 PF13581.6 gi|55379320|ref|YP_137170.1| - 0.02 14.9 1.0 1.2 9.1 0.0 2.9 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain Hemerythrin PF01814.23 gi|55379320|ref|YP_137170.1| - 0.21 12.2 0.1 0.21 12.2 0.1 2.8 4 0 0 4 4 3 0 Hemerythrin HHE cation binding domain KxDL PF10241.9 gi|55379320|ref|YP_137170.1| - 0.24 11.7 1.5 0.47 10.8 1.5 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein HalX PF08663.10 gi|55379320|ref|YP_137170.1| - 0.68 10.3 6.6 0.11 12.9 0.6 2.7 2 0 0 2 2 2 0 HalX domain HATPase_c PF02518.26 gi|55379321|ref|YP_137171.1| - 6.8e-13 49.1 0.0 1.4e-12 48.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|55379321|ref|YP_137171.1| - 3e-09 36.7 0.0 8.7e-09 35.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|55379321|ref|YP_137171.1| - 1.4e-05 25.0 0.1 2.9e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|55379321|ref|YP_137171.1| - 2.8e-05 24.3 0.7 0.00019 21.6 0.1 2.6 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|55379321|ref|YP_137171.1| - 0.0016 18.7 0.0 0.0066 16.7 0.0 2.1 2 1 0 2 2 2 1 PAS domain PAS PF00989.25 gi|55379321|ref|YP_137171.1| - 0.0072 16.3 0.0 0.016 15.2 0.0 1.7 1 1 0 1 1 1 1 PAS fold 2-Hacid_dh_C PF02826.19 gi|55379323|ref|YP_137173.1| - 2.4e-58 196.4 0.0 5e-58 195.4 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|55379323|ref|YP_137173.1| - 2.1e-36 124.6 0.7 4.4e-36 123.5 0.4 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|55379323|ref|YP_137173.1| - 1.2e-07 31.3 0.6 6.6e-06 25.8 0.0 2.9 2 0 0 2 2 2 1 ACT domain UDPG_MGDP_dh_C PF03720.15 gi|55379323|ref|YP_137173.1| - 0.00025 21.4 0.0 0.0023 18.3 0.0 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|55379323|ref|YP_137173.1| - 0.00051 20.3 0.1 0.0029 17.8 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|55379323|ref|YP_137173.1| - 0.0039 16.8 0.0 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|55379323|ref|YP_137173.1| - 0.025 15.2 0.4 0.22 12.1 0.0 2.8 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|55379323|ref|YP_137173.1| - 0.031 14.5 0.4 0.3 11.4 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|55379323|ref|YP_137173.1| - 0.11 12.9 0.0 0.37 11.2 0.0 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding CBS PF00571.28 gi|55379325|ref|YP_137175.1| - 1.9e-30 105.0 11.5 5.9e-09 36.2 0.3 4.1 4 0 0 4 4 4 4 CBS domain HGTP_anticodon PF03129.20 gi|55379326|ref|YP_137176.1| - 7.9e-19 67.6 0.1 4.6e-18 65.2 0.1 2.3 1 1 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|55379326|ref|YP_137176.1| - 3.4e-09 36.9 0.0 7.5e-08 32.5 0.0 2.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zinc_ribbon_4 PF13717.6 gi|55379326|ref|YP_137176.1| - 0.084 12.8 0.6 15 5.6 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain ERCC4 PF02732.15 gi|55379328|ref|YP_137178.1| - 2.7e-23 82.9 0.0 1.1e-22 80.9 0.0 2.1 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|55379328|ref|YP_137178.1| - 1e-22 80.6 0.0 5.9e-22 78.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|55379328|ref|YP_137178.1| - 1.2e-15 57.8 0.0 2.8e-15 56.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|55379328|ref|YP_137178.1| - 1.8e-11 44.5 0.3 1.1e-10 42.0 0.3 2.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|55379328|ref|YP_137178.1| - 2.7e-11 43.4 0.1 7.8e-11 41.9 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif ResIII PF04851.15 gi|55379328|ref|YP_137178.1| - 3.3e-11 43.5 0.0 7.8e-11 42.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.23 gi|55379328|ref|YP_137178.1| - 2.8e-07 30.0 0.4 3.9e-05 23.3 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.6 gi|55379328|ref|YP_137178.1| - 0.018 15.2 1.8 0.055 13.6 0.1 2.6 1 1 2 3 3 3 0 Helicase C-terminal domain RuvB_N PF05496.12 gi|55379328|ref|YP_137178.1| - 0.023 14.5 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain 5_3_exonuc PF01367.20 gi|55379328|ref|YP_137178.1| - 0.075 13.6 0.5 0.57 10.8 0.0 2.6 3 1 1 4 4 3 0 5'-3' exonuclease, C-terminal SAM fold HMG_box_5 PF14887.6 gi|55379328|ref|YP_137178.1| - 0.26 11.3 1.8 0.56 10.2 0.4 2.3 2 0 0 2 2 2 0 HMG (high mobility group) box 5 DLP_helical PF18709.1 gi|55379328|ref|YP_137178.1| - 4.3 6.4 6.8 0.61 9.2 2.5 1.6 2 0 0 2 2 2 0 Dynamin-like helical domain Auto_anti-p27 PF06677.12 gi|55379329|ref|YP_137179.1| - 2e-14 53.5 0.4 2.8e-14 53.0 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|55379329|ref|YP_137179.1| - 0.0024 17.9 1.4 0.0045 17.0 1.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|55379329|ref|YP_137179.1| - 0.0094 15.9 0.7 0.015 15.3 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbons GFA PF04828.14 gi|55379329|ref|YP_137179.1| - 0.029 14.7 1.3 1.5 9.2 0.1 2.4 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.11 gi|55379329|ref|YP_137179.1| - 0.071 13.0 0.3 0.13 12.2 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|55379329|ref|YP_137179.1| - 0.098 12.4 1.1 0.16 11.7 1.1 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|55379329|ref|YP_137179.1| - 0.11 12.3 0.5 0.18 11.7 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FYVE_2 PF02318.16 gi|55379329|ref|YP_137179.1| - 0.13 12.5 0.3 0.23 11.7 0.3 1.3 1 0 0 1 1 1 0 FYVE-type zinc finger zinc_ribbon_15 PF17032.5 gi|55379329|ref|YP_137179.1| - 0.14 12.9 1.0 0.22 12.3 1.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|55379329|ref|YP_137179.1| - 0.14 12.2 0.8 0.24 11.4 0.8 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|55379329|ref|YP_137179.1| - 0.15 11.5 3.7 0.42 10.1 3.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|55379329|ref|YP_137179.1| - 0.19 11.6 2.1 16 5.5 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|55379329|ref|YP_137179.1| - 0.68 9.7 3.5 1.4 8.7 3.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55379329|ref|YP_137179.1| - 0.97 9.6 3.4 3.4 7.9 3.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain SOG2 PF10428.9 gi|55379329|ref|YP_137179.1| - 4 6.5 8.1 4.7 6.3 8.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Ldh_1_N PF00056.23 gi|55379330|ref|YP_137180.1| - 3.7e-39 134.0 0.2 5.3e-39 133.5 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|55379330|ref|YP_137180.1| - 3.2e-28 98.8 0.0 5.3e-28 98.0 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF2072 PF09845.9 gi|55379332|ref|YP_137182.1| - 9.6e-33 113.3 3.3 1e-30 106.7 3.3 2.2 1 1 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|55379332|ref|YP_137182.1| - 0.012 15.7 2.1 0.029 14.5 2.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.11 gi|55379332|ref|YP_137182.1| - 0.15 12.1 2.0 0.17 11.9 0.7 1.7 2 0 0 2 2 2 0 Zinc-ribbon containing domain HypA PF01155.19 gi|55379332|ref|YP_137182.1| - 0.18 11.8 0.4 0.28 11.2 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|55379332|ref|YP_137182.1| - 0.32 11.4 3.7 0.62 10.5 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2073 PF09846.9 gi|55379333|ref|YP_137183.1| - 9.5e-46 154.0 0.7 1.2e-45 153.7 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|55379334|ref|YP_137184.1| - 6.2e-15 55.3 0.0 8.3e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|55379334|ref|YP_137184.1| - 1.3e-10 41.1 0.2 0.00096 18.7 0.0 3.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|55379334|ref|YP_137184.1| - 1.1e-07 31.5 0.0 0.0001 21.8 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|55379334|ref|YP_137184.1| - 1.6e-05 24.5 0.3 0.00014 21.4 0.3 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|55379334|ref|YP_137184.1| - 2.4e-05 24.3 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase Septin PF00735.18 gi|55379334|ref|YP_137184.1| - 0.00022 20.6 0.0 0.00031 20.1 0.0 1.3 1 1 0 1 1 1 1 Septin SRPRB PF09439.10 gi|55379334|ref|YP_137184.1| - 0.00029 20.3 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|55379334|ref|YP_137184.1| - 0.00033 20.9 0.0 0.0076 16.5 0.0 2.1 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|55379334|ref|YP_137184.1| - 0.00037 20.5 0.0 0.00068 19.6 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|55379334|ref|YP_137184.1| - 0.00063 19.4 0.0 0.2 11.3 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_28 PF13521.6 gi|55379334|ref|YP_137184.1| - 0.0012 19.2 0.2 0.094 12.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|55379334|ref|YP_137184.1| - 0.0019 17.4 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_24 PF13479.6 gi|55379334|ref|YP_137184.1| - 0.002 17.9 0.1 0.0077 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|55379334|ref|YP_137184.1| - 0.0023 18.5 0.0 0.01 16.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|55379334|ref|YP_137184.1| - 0.0056 16.8 0.0 0.65 10.0 0.1 2.4 1 1 1 2 2 2 1 Dynamin family AAA PF00004.29 gi|55379334|ref|YP_137184.1| - 0.0064 16.9 0.0 0.024 15.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|55379334|ref|YP_137184.1| - 0.0089 15.6 0.1 2.6 7.6 0.1 2.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|55379334|ref|YP_137184.1| - 0.013 15.8 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|55379334|ref|YP_137184.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|55379334|ref|YP_137184.1| - 0.034 13.9 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|55379334|ref|YP_137184.1| - 0.036 14.4 0.0 0.074 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|55379334|ref|YP_137184.1| - 0.045 14.3 0.0 0.075 13.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|55379334|ref|YP_137184.1| - 0.077 12.6 0.1 0.18 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|55379334|ref|YP_137184.1| - 0.088 11.8 0.1 3.5 6.5 0.0 2.7 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|55379334|ref|YP_137184.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|55379334|ref|YP_137184.1| - 0.17 10.9 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Cdc6_C PF09079.11 gi|55379335|ref|YP_137185.1| - 1.2e-23 82.9 0.0 2.8e-23 81.7 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|55379335|ref|YP_137185.1| - 1.1e-11 45.4 2.3 1.8e-11 44.7 0.0 2.3 3 0 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379335|ref|YP_137185.1| - 1.1e-08 35.5 0.7 5.6e-07 29.9 0.7 2.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379335|ref|YP_137185.1| - 1.7e-08 34.9 0.7 5.1e-06 26.9 0.7 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|55379335|ref|YP_137185.1| - 0.00085 19.5 0.0 0.0087 16.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|55379335|ref|YP_137185.1| - 0.00087 19.3 1.7 0.0019 18.1 0.5 2.1 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|55379335|ref|YP_137185.1| - 0.0013 18.2 0.4 0.0084 15.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein DUF815 PF05673.13 gi|55379335|ref|YP_137185.1| - 0.0024 17.1 0.0 0.0045 16.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|55379335|ref|YP_137185.1| - 0.0032 17.2 0.0 0.0078 15.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55379335|ref|YP_137185.1| - 0.0054 16.5 0.1 0.019 14.7 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|55379335|ref|YP_137185.1| - 0.0054 15.8 0.0 0.0098 15.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|55379335|ref|YP_137185.1| - 0.01 16.4 0.1 0.039 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|55379335|ref|YP_137185.1| - 0.019 14.9 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|55379335|ref|YP_137185.1| - 0.021 14.0 0.0 0.036 13.2 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.14 gi|55379335|ref|YP_137185.1| - 0.026 13.8 0.3 0.18 11.0 0.3 2.1 1 1 0 1 1 1 0 KAP family P-loop domain AAA_13 PF13166.6 gi|55379335|ref|YP_137185.1| - 0.036 12.7 0.1 0.057 12.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain DNA_pol3_delta2 PF13177.6 gi|55379335|ref|YP_137185.1| - 0.058 13.2 0.1 0.28 11.0 0.0 2.0 2 0 0 2 2 2 0 DNA polymerase III, delta subunit AAA_assoc_2 PF16193.5 gi|55379335|ref|YP_137185.1| - 0.059 13.7 0.3 0.21 12.0 0.3 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|55379335|ref|YP_137185.1| - 0.066 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|55379335|ref|YP_137185.1| - 0.068 13.7 0.0 0.18 12.3 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_lid_10 PF17872.1 gi|55379335|ref|YP_137185.1| - 0.077 13.1 0.0 0.87 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA lid domain TsaE PF02367.17 gi|55379335|ref|YP_137185.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AhpC-TSA PF00578.21 gi|55379335|ref|YP_137185.1| - 0.15 12.0 0.2 4 7.4 0.2 2.3 2 0 0 2 2 2 0 AhpC/TSA family NACHT PF05729.12 gi|55379335|ref|YP_137185.1| - 0.15 11.9 0.6 2.6 7.9 0.1 2.9 2 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|55379335|ref|YP_137185.1| - 0.16 12.4 0.0 0.43 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Nnf1 PF03980.14 gi|55379335|ref|YP_137185.1| - 0.3 11.5 3.9 21 5.6 0.0 3.7 3 0 0 3 3 3 0 Nnf1 AAA_24 PF13479.6 gi|55379335|ref|YP_137185.1| - 0.38 10.4 2.1 1.1 8.9 2.1 2.0 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|55379335|ref|YP_137185.1| - 0.47 10.2 4.1 6.2 6.5 2.7 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase DUF3422 PF11902.8 gi|55379335|ref|YP_137185.1| - 1.2 8.1 5.6 7.9 5.5 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) MutS_III PF05192.18 gi|55379335|ref|YP_137185.1| - 2.9 8.1 6.1 9.2 6.4 6.1 1.9 1 1 0 1 1 1 0 MutS domain III Peptidase_S24 PF00717.23 gi|55379336|ref|YP_137186.1| - 2e-05 24.5 0.0 4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_S24 PF00717.23 gi|55379337|ref|YP_137187.1| - 2.8e-07 30.4 0.0 5.8e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|55379338|ref|YP_137188.1| - 3.6e-12 46.1 0.0 5e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos PF00149.28 gi|55379338|ref|YP_137188.1| - 1.1e-11 45.6 0.8 1.7e-11 45.0 0.8 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|55379338|ref|YP_137188.1| - 6.1e-10 39.5 5.6 1.8e-09 38.0 5.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF1249 PF06853.12 gi|55379338|ref|YP_137188.1| - 0.14 12.2 0.1 0.27 11.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) Cys_Met_Meta_PP PF01053.20 gi|55379339|ref|YP_137189.1| - 5.1e-135 449.9 0.0 5.8e-135 449.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|55379339|ref|YP_137189.1| - 7e-07 28.7 0.0 1e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|55379339|ref|YP_137189.1| - 8.3e-06 25.3 0.1 1.6e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|55379339|ref|YP_137189.1| - 0.00056 19.0 0.2 0.0011 18.0 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V SepSecS PF05889.13 gi|55379339|ref|YP_137189.1| - 0.11 11.1 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS RalF_SCD PF18248.1 gi|55379339|ref|YP_137189.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 RalF C-terminal Sec-7 capping domain HAD PF12710.7 gi|55379340|ref|YP_137190.1| - 7.4e-23 81.9 0.2 9.1e-23 81.6 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55379340|ref|YP_137190.1| - 2.2e-13 51.0 8.2 1.4e-11 45.1 8.2 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55379340|ref|YP_137190.1| - 7.5e-09 35.7 0.2 5.9e-05 22.9 0.1 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|55379340|ref|YP_137190.1| - 7.3e-07 29.4 0.1 4.5e-06 26.9 0.0 2.1 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|55379340|ref|YP_137190.1| - 0.0029 17.1 0.0 0.033 13.6 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.6 gi|55379340|ref|YP_137190.1| - 0.029 14.5 0.0 0.13 12.4 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4392 PF14336.6 gi|55379340|ref|YP_137190.1| - 0.064 12.7 1.1 2.6 7.4 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) UMPH-1 PF05822.12 gi|55379340|ref|YP_137190.1| - 0.085 12.3 0.0 0.12 11.9 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Cupin_2 PF07883.11 gi|55379341|ref|YP_137191.1| - 4.9e-10 39.0 0.4 7.1e-10 38.5 0.4 1.3 1 0 0 1 1 1 1 Cupin domain TF_Zn_Ribbon PF08271.12 gi|55379341|ref|YP_137191.1| - 0.0001 21.7 2.5 0.00017 21.0 2.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cupin_3 PF05899.12 gi|55379341|ref|YP_137191.1| - 0.00069 19.3 0.3 0.0011 18.6 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) zf-NADH-PPase PF09297.11 gi|55379341|ref|YP_137191.1| - 0.0012 18.5 0.2 0.15 11.8 0.0 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|55379341|ref|YP_137191.1| - 0.0016 18.3 1.3 0.004 17.1 1.3 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|55379341|ref|YP_137191.1| - 0.017 15.2 2.1 0.072 13.2 2.2 1.8 1 1 1 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|55379341|ref|YP_137191.1| - 0.057 13.0 0.5 3.1 7.5 0.0 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DNA_ligase_ZBD PF03119.16 gi|55379341|ref|YP_137191.1| - 0.083 12.9 5.7 1.7 8.7 1.0 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|55379341|ref|YP_137191.1| - 0.085 12.9 0.3 0.15 12.1 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon Pirin PF02678.16 gi|55379341|ref|YP_137191.1| - 0.17 11.9 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Pirin zinc_ribbon_2 PF13240.6 gi|55379341|ref|YP_137191.1| - 0.25 11.1 3.1 0.38 10.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|55379341|ref|YP_137191.1| - 1.7 8.8 5.0 4.3 7.5 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_9 PF14369.6 gi|55379341|ref|YP_137191.1| - 4.2 7.7 5.6 31 5.0 0.9 2.5 1 1 1 2 2 2 0 zinc-ribbon Helicase_C_2 PF13307.6 gi|55379342|ref|YP_137192.1| - 3e-28 99.1 0.0 6.8e-28 98.0 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|55379342|ref|YP_137192.1| - 3.9e-18 65.7 0.1 4.4e-17 62.2 0.1 2.5 2 1 0 2 2 2 1 DEAD_2 DEAD PF00270.29 gi|55379342|ref|YP_137192.1| - 2.7e-09 37.1 0.1 7.7e-07 29.0 0.0 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|55379342|ref|YP_137192.1| - 8.3e-06 25.9 0.1 0.00055 20.0 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF4456 PF14644.6 gi|55379342|ref|YP_137192.1| - 0.00049 19.8 0.2 0.17 11.6 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4456) HBB PF06777.11 gi|55379342|ref|YP_137192.1| - 0.0018 18.0 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 Helical and beta-bridge domain ATPase PF06745.13 gi|55379342|ref|YP_137192.1| - 0.0022 17.4 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 KaiC Zot PF05707.12 gi|55379342|ref|YP_137192.1| - 0.0073 16.0 0.1 2.2 7.9 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) AAA PF00004.29 gi|55379342|ref|YP_137192.1| - 0.034 14.6 0.1 4.5 7.7 0.1 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_34 PF13872.6 gi|55379342|ref|YP_137192.1| - 0.047 12.6 0.0 0.098 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 TrwB_AAD_bind PF10412.9 gi|55379342|ref|YP_137192.1| - 0.058 12.3 0.1 0.12 11.3 0.1 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|55379342|ref|YP_137192.1| - 0.074 12.3 0.1 3.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|55379342|ref|YP_137192.1| - 0.14 11.6 0.1 0.44 10.0 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein CENP-H PF05837.12 gi|55379342|ref|YP_137192.1| - 0.8 10.1 4.3 0.31 11.5 0.9 2.0 2 0 0 2 2 2 0 Centromere protein H (CENP-H) HCMV_UL139 PF12507.8 gi|55379342|ref|YP_137192.1| - 1.8 8.9 5.9 0.53 10.7 0.4 2.6 2 1 1 3 3 3 0 Human Cytomegalovirus UL139 protein Cation_efflux PF01545.21 gi|55379344|ref|YP_137194.1| - 1.2e-31 110.0 2.8 1.8e-31 109.5 2.8 1.3 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|55379344|ref|YP_137194.1| - 1.3e-05 25.2 0.1 2.1e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Metallophos_2 PF12850.7 gi|55379345|ref|YP_137195.1| - 7.1e-25 88.1 2.2 8.9e-25 87.8 2.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|55379345|ref|YP_137195.1| - 0.00034 21.2 6.4 0.034 14.6 0.5 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|55379345|ref|YP_137195.1| - 0.011 15.1 0.1 0.025 13.9 0.0 1.5 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily HTH_20 PF12840.7 gi|55379346|ref|YP_137196.1| - 2.4e-14 53.1 0.2 5.7e-14 51.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55379346|ref|YP_137196.1| - 4.7e-05 23.2 0.0 7.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|55379346|ref|YP_137196.1| - 5.8e-05 22.6 0.0 9.9e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55379346|ref|YP_137196.1| - 0.00024 20.9 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|55379346|ref|YP_137196.1| - 0.011 15.6 0.0 0.048 13.6 0.0 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|55379346|ref|YP_137196.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.20 gi|55379346|ref|YP_137196.1| - 0.1 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator FtsH_ext PF06480.15 gi|55379347|ref|YP_137197.1| - 0.12 12.8 0.2 0.12 12.8 0.2 1.0 1 0 0 1 1 1 0 FtsH Extracellular Peptidase_M29 PF02073.15 gi|55379348|ref|YP_137198.1| - 1.6e-67 228.1 0.0 1.9e-67 227.9 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) MCPsignal PF00015.21 gi|55379349|ref|YP_137199.1| - 8.6e-41 139.6 18.8 8.6e-41 139.6 18.8 4.5 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|55379349|ref|YP_137199.1| - 3.9e-10 40.0 1.6 3.9e-10 40.0 1.6 4.1 4 0 0 4 4 3 1 HAMP domain DUF948 PF06103.11 gi|55379349|ref|YP_137199.1| - 1.3e-05 25.3 43.6 0.029 14.6 0.4 7.7 4 2 3 7 7 7 3 Bacterial protein of unknown function (DUF948) Mod_r PF07200.13 gi|55379349|ref|YP_137199.1| - 0.0011 19.0 16.5 0.52 10.4 3.9 4.2 2 1 1 4 4 4 2 Modifier of rudimentary (Mod(r)) protein DUF1664 PF07889.12 gi|55379349|ref|YP_137199.1| - 0.0016 18.5 22.9 0.054 13.5 2.9 4.7 3 2 1 4 4 4 2 Protein of unknown function (DUF1664) DASH_Dad2 PF08654.10 gi|55379349|ref|YP_137199.1| - 0.0023 18.3 0.5 0.0023 18.3 0.5 5.2 3 2 2 5 5 5 1 DASH complex subunit Dad2 dCache_1 PF02743.18 gi|55379349|ref|YP_137199.1| - 0.0093 15.8 0.1 0.0093 15.8 0.1 4.0 2 1 1 3 3 3 1 Cache domain Fib_alpha PF08702.10 gi|55379349|ref|YP_137199.1| - 0.02 15.1 0.7 0.02 15.1 0.7 4.3 2 2 1 4 4 4 0 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|55379349|ref|YP_137199.1| - 0.034 13.0 30.3 0.26 10.1 9.0 3.2 2 1 1 3 3 3 0 Spc7 kinetochore protein COG2 PF06148.11 gi|55379349|ref|YP_137199.1| - 0.051 13.7 19.6 0.83 9.7 1.4 5.2 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.12 gi|55379349|ref|YP_137199.1| - 0.068 13.2 35.5 0.19 11.8 0.9 5.3 2 2 3 5 5 5 0 Laminin Domain II IFT57 PF10498.9 gi|55379349|ref|YP_137199.1| - 0.096 11.6 15.7 0.96 8.3 1.6 3.1 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 gi|55379349|ref|YP_137199.1| - 0.2 11.6 14.8 8.8 6.2 0.9 5.1 3 2 4 7 7 7 0 Sec34-like family Bacillus_HBL PF05791.11 gi|55379349|ref|YP_137199.1| - 0.21 11.4 2.7 0.49 10.2 0.1 2.6 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) BLOC1_2 PF10046.9 gi|55379349|ref|YP_137199.1| - 0.24 11.7 22.8 1.1 9.6 0.5 6.0 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 EzrA PF06160.12 gi|55379349|ref|YP_137199.1| - 0.28 9.3 20.5 0.16 10.1 0.3 3.6 2 1 0 3 3 3 0 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.12 gi|55379349|ref|YP_137199.1| - 0.3 11.2 36.5 0.51 10.4 8.1 4.6 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein YkyA PF10368.9 gi|55379349|ref|YP_137199.1| - 0.31 10.7 28.3 0.25 11.0 5.2 4.0 3 2 1 4 4 4 0 Putative cell-wall binding lipoprotein Baculo_PEP_C PF04513.12 gi|55379349|ref|YP_137199.1| - 0.32 11.0 17.1 1 9.4 0.6 4.3 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus OmpH PF03938.14 gi|55379349|ref|YP_137199.1| - 0.41 11.0 18.4 1.2 9.5 2.9 3.4 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) AAA_13 PF13166.6 gi|55379349|ref|YP_137199.1| - 0.88 8.1 25.9 0.11 11.1 13.5 2.3 1 1 1 2 2 2 0 AAA domain CENP-F_leu_zip PF10473.9 gi|55379349|ref|YP_137199.1| - 0.97 9.5 21.8 0.17 11.9 3.7 3.6 3 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin-6_N PF09177.11 gi|55379349|ref|YP_137199.1| - 1.2 9.8 28.3 0.4 11.3 0.6 4.9 3 1 2 5 5 4 0 Syntaxin 6, N-terminal FAA_hydro_N_2 PF18288.1 gi|55379349|ref|YP_137199.1| - 1.2 9.6 6.5 0.92 10.0 0.2 4.1 3 2 1 4 4 2 0 Fumarylacetoacetase N-terminal domain 2 AATF-Che1 PF13339.6 gi|55379349|ref|YP_137199.1| - 1.6 9.4 18.0 4.2 8.1 1.4 3.8 3 1 0 3 3 3 0 Apoptosis antagonizing transcription factor FUSC PF04632.12 gi|55379349|ref|YP_137199.1| - 1.6 7.2 40.6 0.91 8.0 12.6 4.4 2 1 0 3 3 3 0 Fusaric acid resistance protein family Seryl_tRNA_N PF02403.22 gi|55379349|ref|YP_137199.1| - 1.7 8.9 22.0 1.1 9.5 4.1 4.6 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain YabA PF06156.13 gi|55379349|ref|YP_137199.1| - 2 9.1 9.3 10 6.8 0.4 4.2 3 1 1 4 4 4 0 Initiation control protein YabA NPV_P10 PF05531.12 gi|55379349|ref|YP_137199.1| - 2.3 8.7 22.9 1.9 9.0 1.3 5.4 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein Jnk-SapK_ap_N PF09744.9 gi|55379349|ref|YP_137199.1| - 4.4 7.5 25.8 9.3 6.5 6.6 4.2 2 1 2 4 4 4 0 JNK_SAPK-associated protein-1 Filament PF00038.21 gi|55379349|ref|YP_137199.1| - 5.1 6.6 28.4 10 5.6 20.9 2.6 2 1 0 2 2 2 0 Intermediate filament protein DUF724 PF05266.14 gi|55379349|ref|YP_137199.1| - 5.2 6.8 18.5 0.52 10.1 2.6 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF724) DegS PF05384.11 gi|55379349|ref|YP_137199.1| - 5.4 6.5 21.4 1.4 8.4 5.3 3.9 3 1 0 3 3 3 0 Sensor protein DegS LMBR1 PF04791.16 gi|55379349|ref|YP_137199.1| - 6.2 5.6 10.3 11 4.8 6.6 2.2 1 1 0 2 2 2 0 LMBR1-like membrane protein GAS PF13851.6 gi|55379349|ref|YP_137199.1| - 6.7 6.0 18.7 77 2.5 14.1 3.3 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding ApoLp-III PF07464.11 gi|55379349|ref|YP_137199.1| - 7.9 6.6 30.1 2.9 8.0 7.9 4.3 2 2 1 3 3 3 0 Apolipophorin-III precursor (apoLp-III) Med9 PF07544.13 gi|55379349|ref|YP_137199.1| - 7.9 6.6 12.1 8.4 6.6 0.0 4.7 4 1 1 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 DUF2203 PF09969.9 gi|55379349|ref|YP_137199.1| - 8.9 7.1 28.5 2.2 9.0 1.0 5.3 3 2 1 5 5 5 0 Uncharacterized conserved protein (DUF2203) SKA1 PF07160.12 gi|55379349|ref|YP_137199.1| - 9.3 6.0 10.5 9.2 6.0 1.7 3.1 3 0 0 3 3 3 0 Spindle and kinetochore-associated protein 1 Fzo_mitofusin PF04799.13 gi|55379349|ref|YP_137199.1| - 9.6 5.7 20.6 7.3 6.1 0.1 4.8 4 1 1 5 5 5 0 fzo-like conserved region IFT20 PF14931.6 gi|55379349|ref|YP_137199.1| - 9.8 6.4 15.3 4.2 7.6 0.7 4.3 3 1 0 4 4 4 0 Intraflagellar transport complex B, subunit 20 YccF PF03733.13 gi|55379350|ref|YP_137200.1| - 4.2e-09 37.0 27.1 2.7e-05 24.8 10.2 2.1 2 0 0 2 2 2 2 Inner membrane component domain DUF3930 PF13067.6 gi|55379350|ref|YP_137200.1| - 0.17 12.2 1.7 0.91 9.8 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) DUF21 PF01595.20 gi|55379351|ref|YP_137201.1| - 3e-42 144.3 5.5 3.5e-42 144.1 5.5 1.0 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain RTX PF02382.15 gi|55379351|ref|YP_137201.1| - 0.27 10.9 1.2 0.28 10.8 0.6 1.4 1 1 1 2 2 2 0 N-terminal domain in RTX protein DZR PF12773.7 gi|55379352|ref|YP_137202.1| - 0.00027 20.9 1.9 0.00041 20.3 1.9 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55379352|ref|YP_137202.1| - 0.001 18.7 1.2 0.0015 18.2 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain RecR PF02132.15 gi|55379352|ref|YP_137202.1| - 0.033 13.8 0.5 0.064 12.8 0.5 1.5 1 0 0 1 1 1 0 RecR protein Cript PF10235.9 gi|55379352|ref|YP_137202.1| - 0.036 14.6 0.1 0.045 14.3 0.1 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Auto_anti-p27 PF06677.12 gi|55379352|ref|YP_137202.1| - 0.086 13.0 2.5 0.17 12.1 2.5 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RanBP PF00641.18 gi|55379352|ref|YP_137202.1| - 0.37 10.2 3.7 0.6 9.5 3.7 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DUF2157 PF09925.9 gi|55379353|ref|YP_137203.1| - 0.11 12.2 21.2 1.2 8.9 21.2 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF4131 PF13567.6 gi|55379353|ref|YP_137203.1| - 6.7 6.3 15.2 1.2 8.8 1.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Radical_SAM PF04055.21 gi|55379354|ref|YP_137204.1| - 2.6e-05 24.7 0.6 0.0011 19.4 0.5 2.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|55379354|ref|YP_137204.1| - 0.0076 16.4 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|55379354|ref|YP_137204.1| - 0.084 13.1 0.1 0.2 11.9 0.1 1.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain PASTA PF03793.19 gi|55379354|ref|YP_137204.1| - 0.15 11.9 0.0 0.66 9.9 0.0 2.1 2 0 0 2 2 2 0 PASTA domain PsiE PF06146.12 gi|55379355|ref|YP_137205.1| - 1.9e-14 53.8 7.1 1.9e-14 53.8 7.1 2.2 2 1 0 2 2 2 1 Phosphate-starvation-inducible E DUF2177 PF09945.9 gi|55379355|ref|YP_137205.1| - 0.53 10.4 7.2 0.79 9.8 2.9 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2177) DUF202 PF02656.15 gi|55379355|ref|YP_137205.1| - 5 7.7 9.6 85 3.7 9.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF373 PF04123.13 gi|55379356|ref|YP_137206.1| - 1.2e-116 389.8 9.0 1.4e-116 389.6 9.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP-synt_I PF03899.15 gi|55379356|ref|YP_137206.1| - 0.3 11.5 8.6 2.9 8.3 0.2 2.5 2 0 0 2 2 2 0 ATP synthase I chain MctB PF11382.8 gi|55379357|ref|YP_137207.1| - 0.00021 21.1 1.9 0.00026 20.8 1.9 1.2 1 0 0 1 1 1 1 Copper transport outer membrane protein, MctB Bac_globin PF01152.21 gi|55379358|ref|YP_137208.1| - 1.5e-22 80.0 0.0 1.6e-22 79.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|55379358|ref|YP_137208.1| - 0.00047 20.1 0.0 0.0011 18.9 0.0 1.6 1 1 1 2 2 2 1 Protoglobin TRAM PF01938.20 gi|55379360|ref|YP_137210.1| - 9.1e-08 32.0 0.2 1.3e-07 31.5 0.2 1.3 1 0 0 1 1 1 1 TRAM domain EBV-NA3 PF05009.12 gi|55379360|ref|YP_137210.1| - 1 8.8 3.6 1.4 8.4 3.6 1.1 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) DNA_pol_phi PF04931.13 gi|55379360|ref|YP_137210.1| - 1.7 6.6 6.1 2 6.4 6.1 1.0 1 0 0 1 1 1 0 DNA polymerase phi adh_short_C2 PF13561.6 gi|55379361|ref|YP_137211.1| - 3.9e-51 173.9 0.1 5.2e-51 173.4 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55379361|ref|YP_137211.1| - 2.7e-40 137.9 0.0 3.4e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|55379361|ref|YP_137211.1| - 1.6e-10 41.2 0.0 2.2e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|55379361|ref|YP_137211.1| - 0.001 19.0 0.4 0.0019 18.1 0.3 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Adenine_deam_C PF13382.6 gi|55379361|ref|YP_137211.1| - 0.11 11.8 0.3 0.34 10.2 0.5 1.7 2 0 0 2 2 2 0 Adenine deaminase C-terminal domain NTP_transferase PF00483.23 gi|55379362|ref|YP_137212.1| - 4.2e-38 131.3 0.0 7.1e-38 130.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55379362|ref|YP_137212.1| - 3.7e-06 27.4 0.1 7e-06 26.5 0.1 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|55379362|ref|YP_137212.1| - 0.0035 17.2 0.1 0.0052 16.7 0.1 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase OEP PF02321.18 gi|55379363|ref|YP_137213.1| - 0.075 12.8 0.3 0.098 12.5 0.3 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein tRNA_anti-codon PF01336.25 gi|55379364|ref|YP_137214.1| - 0.011 15.7 0.2 0.13 12.3 0.0 2.4 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Glyoxalase PF00903.25 gi|55379367|ref|YP_137216.1| - 2e-14 53.9 0.0 2.3e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|55379367|ref|YP_137216.1| - 3.2e-11 43.5 0.0 4.6e-11 42.9 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|55379367|ref|YP_137216.1| - 5e-06 26.4 0.0 0.03 14.2 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|55379367|ref|YP_137216.1| - 4.5e-05 24.2 0.6 8.4e-05 23.3 0.6 1.5 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|55379367|ref|YP_137216.1| - 0.00021 21.5 0.1 0.00026 21.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain RHH_1 PF01402.21 gi|55379366|ref|YP_137217.1| - 0.0011 18.8 0.2 0.0011 18.8 0.2 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|55379366|ref|YP_137217.1| - 0.0054 16.3 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|55379366|ref|YP_137217.1| - 0.011 16.2 0.0 0.028 15.0 0.0 1.6 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system TetR_C_24 PF17932.1 gi|55379366|ref|YP_137217.1| - 0.18 12.1 3.1 0.29 11.4 1.5 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Histone_HNS PF00816.21 gi|55379366|ref|YP_137217.1| - 0.27 12.1 2.2 30 5.5 1.4 2.2 2 0 0 2 2 2 0 H-NS histone family HNH PF01844.23 gi|55379370|ref|YP_137220.1| - 1.6e-06 28.2 0.1 1.6e-06 28.2 0.1 5.0 5 1 1 6 6 5 2 HNH endonuclease Zn-ribbon_8 PF09723.10 gi|55379370|ref|YP_137220.1| - 0.011 15.8 19.2 0.81 9.9 2.0 5.7 5 1 1 6 6 6 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|55379370|ref|YP_137220.1| - 0.021 15.3 1.4 0.021 15.3 1.4 5.7 7 0 0 7 7 7 0 Zinc finger, C2H2 type HNH_2 PF13391.6 gi|55379370|ref|YP_137220.1| - 0.04 14.0 2.3 0.13 12.4 0.6 2.7 3 1 0 3 3 2 0 HNH endonuclease zf-C2H2_4 PF13894.6 gi|55379370|ref|YP_137220.1| - 0.057 14.3 0.8 0.057 14.3 0.8 6.3 7 0 0 7 7 7 0 C2H2-type zinc finger C1_1 PF00130.22 gi|55379370|ref|YP_137220.1| - 0.18 11.7 0.3 0.18 11.7 0.3 4.6 4 1 1 5 5 5 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rad50_zn_hook PF04423.14 gi|55379370|ref|YP_137220.1| - 0.19 11.6 3.3 0.26 11.2 0.3 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-MYND PF01753.18 gi|55379370|ref|YP_137220.1| - 0.22 11.6 16.4 0.089 12.9 1.6 4.5 4 2 0 4 4 3 0 MYND finger zf-C2H2_6 PF13912.6 gi|55379370|ref|YP_137220.1| - 0.52 10.4 20.6 0.49 10.5 0.3 5.0 5 0 0 5 5 5 0 C2H2-type zinc finger DZR PF12773.7 gi|55379370|ref|YP_137220.1| - 0.6 10.2 0.1 0.6 10.2 0.1 4.9 2 1 0 2 2 1 0 Double zinc ribbon DUF2256 PF10013.9 gi|55379370|ref|YP_137220.1| - 0.85 9.8 0.0 0.85 9.8 0.0 6.9 8 1 0 8 8 8 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF4428 PF14471.6 gi|55379370|ref|YP_137220.1| - 1 9.3 4.9 5.1 7.1 0.1 3.9 4 0 0 4 4 4 0 Domain of unknown function (DUF4428) zf-RING_7 PF02591.15 gi|55379370|ref|YP_137220.1| - 2.1 8.6 0.0 2.1 8.6 0.0 4.5 6 0 0 6 6 4 0 C4-type zinc ribbon domain YhfH PF14149.6 gi|55379370|ref|YP_137220.1| - 6.4 6.8 12.2 0.63 10.1 0.5 3.8 4 0 0 4 4 3 0 YhfH-like protein Pribosyltran PF00156.27 gi|55379372|ref|YP_137222.1| - 1.2e-25 89.9 0.2 1.8e-24 86.0 0.2 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|55379372|ref|YP_137222.1| - 4e-05 23.2 0.0 0.00037 20.1 0.0 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|55379372|ref|YP_137222.1| - 0.00036 20.0 0.0 0.00052 19.5 0.0 1.5 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase CBS PF00571.28 gi|55379374|ref|YP_137223.1| - 1.6e-22 79.7 3.6 2.9e-13 50.0 0.3 2.6 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|55379374|ref|YP_137223.1| - 3.2e-14 52.8 8.4 1.9e-08 33.9 0.1 3.1 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|55379374|ref|YP_137223.1| - 0.00074 19.2 4.4 0.00074 19.2 4.4 1.9 2 0 0 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|55379374|ref|YP_137223.1| - 0.0076 16.5 1.9 0.0076 16.5 1.9 2.2 3 0 0 3 3 3 1 Putative zincin peptidase Cupin_2 PF07883.11 gi|55379373|ref|YP_137224.1| - 4.6e-18 64.7 0.3 6.3e-18 64.3 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|55379373|ref|YP_137224.1| - 6.2e-08 32.4 0.0 1e-07 31.7 0.0 1.3 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|55379373|ref|YP_137224.1| - 4e-05 23.5 0.1 5.4e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|55379373|ref|YP_137224.1| - 0.00031 20.6 0.0 0.00041 20.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|55379373|ref|YP_137224.1| - 0.0012 18.5 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|55379373|ref|YP_137224.1| - 0.0012 19.0 0.0 0.0017 18.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like DEAD PF00270.29 gi|55379375|ref|YP_137225.1| - 1.6e-21 76.9 0.0 5.1e-21 75.2 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|55379375|ref|YP_137225.1| - 4e-14 52.9 0.0 8.6e-14 51.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|55379375|ref|YP_137225.1| - 9.9e-10 38.7 0.0 1.8e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PhnA_Zn_Ribbon PF08274.12 gi|55379375|ref|YP_137225.1| - 0.01 15.8 0.8 0.021 14.7 0.8 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon TackOD1 PF18551.1 gi|55379377|ref|YP_137227.1| - 0.00037 20.2 0.1 0.00037 20.2 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HypA PF01155.19 gi|55379377|ref|YP_137227.1| - 0.00085 19.3 0.3 0.001 19.1 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|55379377|ref|YP_137227.1| - 0.0016 18.4 1.2 0.0023 17.9 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|55379377|ref|YP_137227.1| - 0.0025 18.5 0.6 0.0029 18.3 0.6 1.1 1 0 0 1 1 1 1 zinc-ribbon family Nop10p PF04135.12 gi|55379377|ref|YP_137227.1| - 0.018 15.1 0.6 0.034 14.2 0.6 1.5 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family UPF0547 PF10571.9 gi|55379377|ref|YP_137227.1| - 0.034 14.2 1.1 0.057 13.5 1.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|55379377|ref|YP_137227.1| - 0.1 12.5 2.4 0.19 11.6 2.4 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|55379377|ref|YP_137227.1| - 0.21 11.7 7.8 1.6 8.9 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|55379377|ref|YP_137227.1| - 0.42 10.4 0.3 0.42 10.4 0.3 1.8 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-ISL3 PF14690.6 gi|55379377|ref|YP_137227.1| - 2.2 9.0 5.0 24 5.7 0.2 2.6 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CitMHS PF03600.16 gi|55379378|ref|YP_137228.1| - 3.4e-61 207.1 6.1 3.4e-61 207.1 6.1 1.6 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|55379378|ref|YP_137228.1| - 3.7e-22 79.0 35.8 1.2e-12 47.7 13.1 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|55379378|ref|YP_137228.1| - 1.1e-21 76.4 3.5 6e-13 48.4 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain PepSY_2 PF13670.6 gi|55379378|ref|YP_137228.1| - 0.53 10.3 0.0 0.53 10.3 0.0 2.8 3 0 0 3 3 3 0 Peptidase propeptide and YPEB domain MCPsignal PF00015.21 gi|55379379|ref|YP_137229.1| - 6e-40 136.9 25.5 6e-40 136.9 25.5 5.0 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|55379379|ref|YP_137229.1| - 3.1e-14 53.1 27.6 6.2e-12 45.7 0.2 6.5 8 0 0 8 8 7 2 HAMP domain dCache_1 PF02743.18 gi|55379379|ref|YP_137229.1| - 8.3e-07 29.0 0.1 8.3e-07 29.0 0.1 3.7 3 2 0 4 4 4 1 Cache domain Mce4_CUP1 PF11887.8 gi|55379379|ref|YP_137229.1| - 0.038 13.4 0.3 0.038 13.4 0.3 3.3 1 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF1664 PF07889.12 gi|55379379|ref|YP_137229.1| - 0.052 13.6 33.2 0.14 12.2 1.9 5.8 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) PSDC PF12588.8 gi|55379379|ref|YP_137229.1| - 0.16 11.9 0.5 0.53 10.3 0.1 2.1 2 0 0 2 2 2 0 Phophatidylserine decarboxylase BLOC1_2 PF10046.9 gi|55379379|ref|YP_137229.1| - 0.23 11.8 29.0 0.41 11.0 0.8 5.9 2 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|55379379|ref|YP_137229.1| - 1 9.5 25.4 0.88 9.7 1.1 4.8 3 2 1 5 5 5 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.9 gi|55379379|ref|YP_137229.1| - 1.1 10.0 38.3 0.078 13.7 1.6 5.6 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) DUF948 PF06103.11 gi|55379379|ref|YP_137229.1| - 1.4 9.2 48.3 0.056 13.7 6.1 7.4 2 1 3 5 5 5 0 Bacterial protein of unknown function (DUF948) DUF489 PF04356.12 gi|55379379|ref|YP_137229.1| - 2.6 8.0 5.9 1.9 8.5 2.0 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF489) Mod_r PF07200.13 gi|55379379|ref|YP_137229.1| - 3.3 7.8 34.2 0.5 10.5 7.9 5.0 3 1 2 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Spc7 PF08317.11 gi|55379379|ref|YP_137229.1| - 4.7 6.0 43.5 2.6 6.8 1.2 4.3 1 1 3 4 4 4 0 Spc7 kinetochore protein Bmp PF02608.14 gi|55379380|ref|YP_137230.1| - 2.1e-60 204.2 0.1 2.8e-60 203.9 0.1 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|55379380|ref|YP_137230.1| - 2.4e-05 24.0 1.5 3.5e-05 23.5 1.4 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain MCM PF00493.23 gi|55379381|ref|YP_137231.1| - 2.5e-86 288.4 0.0 1.1e-65 220.8 0.0 2.2 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|55379381|ref|YP_137231.1| - 7.4e-37 126.0 0.1 1.9e-36 124.7 0.1 1.7 1 0 0 1 1 1 1 MCM OB domain LAGLIDADG_3 PF14528.6 gi|55379381|ref|YP_137231.1| - 4.1e-28 97.5 0.0 4.5e-15 55.7 0.0 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain MCM_lid PF17855.1 gi|55379381|ref|YP_137231.1| - 2.9e-27 94.9 0.3 9.8e-27 93.2 0.1 2.1 2 0 0 2 2 1 1 MCM AAA-lid domain Intein_splicing PF14890.6 gi|55379381|ref|YP_137231.1| - 2.4e-25 89.0 0.0 1e-24 87.0 0.0 2.1 2 0 0 2 2 2 1 Intein splicing domain HTH_31 PF13560.6 gi|55379381|ref|YP_137231.1| - 7.2e-10 39.1 0.3 7.2e-10 39.1 0.3 2.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|55379381|ref|YP_137231.1| - 2.1e-09 37.3 0.0 5.1e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix MCM_N PF14551.6 gi|55379381|ref|YP_137231.1| - 3.6e-08 33.9 1.0 1.7e-07 31.7 0.8 2.2 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|55379381|ref|YP_137231.1| - 7.4e-08 32.0 0.0 1.5e-05 24.4 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_19 PF12844.7 gi|55379381|ref|YP_137231.1| - 0.0001 22.2 0.7 0.03 14.4 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain AAA_5 PF07728.14 gi|55379381|ref|YP_137231.1| - 0.0028 17.7 0.0 0.38 10.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|55379381|ref|YP_137231.1| - 0.0067 16.2 0.0 0.2 11.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain RQC PF09382.10 gi|55379381|ref|YP_137231.1| - 0.027 14.3 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 RQC domain Hint PF01079.20 gi|55379381|ref|YP_137231.1| - 0.041 13.4 0.0 0.61 9.6 0.0 2.1 2 0 0 2 2 2 0 Hint module RcpC PF16976.5 gi|55379381|ref|YP_137231.1| - 0.14 12.2 0.3 1.8 8.7 0.1 2.5 2 0 0 2 2 2 0 Flp pilus assembly protein RcpC/CpaB FUSC PF04632.12 gi|55379383|ref|YP_137233.1| - 9 4.7 14.3 26 3.2 12.9 1.8 1 1 0 1 1 1 0 Fusaric acid resistance protein family PRCC PF10253.9 gi|55379384|ref|YP_137234.1| - 0.13 13.0 3.6 0.18 12.6 3.6 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting ParA PF10609.9 gi|55379385|ref|YP_137235.1| - 1.1e-12 47.9 0.3 1.5e-06 27.8 0.1 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|55379385|ref|YP_137235.1| - 1.2e-10 41.2 1.0 0.00012 21.7 0.0 3.0 3 0 0 3 3 3 3 Cellulose biosynthesis protein BcsQ CbiA PF01656.23 gi|55379385|ref|YP_137235.1| - 1.2e-07 31.8 0.0 3.1e-07 30.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|55379385|ref|YP_137235.1| - 3.9e-07 30.2 0.0 2.1e-06 27.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|55379385|ref|YP_137235.1| - 0.00035 20.1 0.0 0.0054 16.2 0.0 2.0 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|55379385|ref|YP_137235.1| - 0.0016 17.8 0.2 0.63 9.3 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|55379385|ref|YP_137235.1| - 0.0043 16.3 0.0 0.013 14.7 0.1 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|55379385|ref|YP_137235.1| - 0.0061 16.2 2.6 0.012 15.2 0.8 2.1 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|55379385|ref|YP_137235.1| - 0.08 12.7 0.0 0.16 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|55379385|ref|YP_137235.1| - 0.11 12.6 0.4 0.32 11.2 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|55379385|ref|YP_137235.1| - 0.12 13.0 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|55379385|ref|YP_137235.1| - 0.12 12.8 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA helicase TFIIB PF00382.19 gi|55379386|ref|YP_137236.1| - 3.7e-32 110.2 2.1 1.6e-16 60.1 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55379386|ref|YP_137236.1| - 4.7e-10 38.8 2.9 1e-09 37.8 2.9 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|55379386|ref|YP_137236.1| - 0.019 15.0 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HTH_28 PF13518.6 gi|55379387|ref|YP_137237.1| - 0.21 11.8 0.5 2.7 8.2 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain FMN_red PF03358.15 gi|55379389|ref|YP_137239.1| - 2.3e-26 92.4 0.0 3e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|55379389|ref|YP_137239.1| - 3.9e-07 30.0 0.0 5.7e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold T2SSL PF05134.13 gi|55379389|ref|YP_137239.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein L Rieske PF00355.26 gi|55379390|ref|YP_137240.1| - 2.1e-07 30.8 0.1 3.7e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain MatE PF01554.18 gi|55379391|ref|YP_137241.1| - 4.7e-46 156.4 25.3 5.7e-25 87.8 9.0 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|55379391|ref|YP_137241.1| - 5.8e-06 26.4 15.4 5.8e-06 26.4 15.4 3.7 4 1 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Tom5 PF10642.9 gi|55379391|ref|YP_137241.1| - 1.5 8.9 5.1 0.54 10.3 0.4 2.5 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase TetR_C_6 PF13977.6 gi|55379392|ref|YP_137242.1| - 1.7e-14 54.0 0.1 4.3e-14 52.7 0.0 1.6 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|55379392|ref|YP_137242.1| - 1.8e-10 40.4 0.0 3e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_25 PF17933.1 gi|55379392|ref|YP_137242.1| - 6.7e-05 23.2 0.1 0.00031 21.0 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|55379392|ref|YP_137242.1| - 6.8e-05 23.1 0.0 0.00015 22.0 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|55379392|ref|YP_137242.1| - 0.0002 21.4 0.0 0.00029 20.9 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|55379392|ref|YP_137242.1| - 0.005 17.1 0.8 0.0068 16.7 0.1 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|55379392|ref|YP_137242.1| - 0.0057 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|55379392|ref|YP_137242.1| - 0.0057 16.7 0.0 0.013 15.5 0.0 1.7 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 gi|55379392|ref|YP_137242.1| - 0.01 16.0 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region TetR_C_31 PF17940.1 gi|55379392|ref|YP_137242.1| - 0.026 14.7 0.2 0.057 13.6 0.2 1.6 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain UPF0122 PF04297.14 gi|55379392|ref|YP_137242.1| - 0.098 12.9 0.1 0.21 11.8 0.1 1.6 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like AsnC_trans_reg PF01037.21 gi|55379393|ref|YP_137243.1| - 2.8e-13 49.6 0.0 4.4e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|55379393|ref|YP_137243.1| - 1.4e-09 37.3 0.1 2.9e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55379393|ref|YP_137243.1| - 9.1e-07 28.7 0.0 1.5e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|55379393|ref|YP_137243.1| - 9.5e-07 28.5 0.2 1.5e-06 27.9 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|55379393|ref|YP_137243.1| - 8e-05 22.5 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|55379393|ref|YP_137243.1| - 0.00047 20.1 0.0 0.0012 18.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55379393|ref|YP_137243.1| - 0.0075 16.2 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|55379393|ref|YP_137243.1| - 0.0084 15.8 0.1 0.019 14.7 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain GntR PF00392.21 gi|55379393|ref|YP_137243.1| - 0.013 15.1 0.0 0.033 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|55379393|ref|YP_137243.1| - 0.016 15.0 0.1 0.055 13.3 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.22 gi|55379393|ref|YP_137243.1| - 0.019 14.9 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|55379393|ref|YP_137243.1| - 0.022 14.7 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pneumo_matrix PF03393.16 gi|55379393|ref|YP_137243.1| - 0.024 13.8 0.0 0.031 13.5 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus matrix protein HTH_28 PF13518.6 gi|55379393|ref|YP_137243.1| - 0.034 14.3 0.0 0.088 13.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain Cdc6_C PF09079.11 gi|55379393|ref|YP_137243.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_50 PF18024.1 gi|55379393|ref|YP_137243.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Gln-synt_C PF00120.24 gi|55379394|ref|YP_137244.1| - 7.3e-141 469.1 0.0 9.2e-141 468.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|55379394|ref|YP_137244.1| - 8.2e-30 102.4 0.1 1.9e-29 101.2 0.1 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|55379394|ref|YP_137244.1| - 0.16 11.8 0.0 0.67 9.8 0.0 2.0 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain PAP2 PF01569.21 gi|55379395|ref|YP_137245.1| - 2.5e-15 56.4 4.1 2.5e-15 56.4 4.1 2.3 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|55379395|ref|YP_137245.1| - 9e-11 41.8 7.0 9e-11 41.8 7.0 1.8 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|55379395|ref|YP_137245.1| - 0.23 12.0 1.1 0.37 11.4 0.3 1.7 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Virul_fac_BrkB PF03631.15 gi|55379396|ref|YP_137246.1| - 9.4e-37 127.0 18.3 9.4e-37 127.0 18.3 2.1 2 0 0 2 2 2 1 Virulence factor BrkB DUF2207 PF09972.9 gi|55379396|ref|YP_137246.1| - 0.16 10.7 0.0 0.16 10.7 0.0 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) MatE PF01554.18 gi|55379397|ref|YP_137247.1| - 2.1e-46 157.5 24.0 9.3e-25 87.2 8.4 2.4 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|55379397|ref|YP_137247.1| - 2.3e-09 37.5 6.0 2.3e-09 37.5 6.0 4.6 4 2 2 6 6 6 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|55379397|ref|YP_137247.1| - 2.2e-05 23.3 4.3 2.2e-05 23.3 4.3 2.5 2 1 0 2 2 2 2 Lipid II flippase MurJ HTH_10 PF04967.12 gi|55379398|ref|YP_137248.1| - 1e-12 47.6 0.0 1.2e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|55379398|ref|YP_137248.1| - 5.1e-05 23.1 0.1 6.3e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55379398|ref|YP_137248.1| - 0.00033 20.5 0.2 0.00052 19.9 0.0 1.4 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|55379398|ref|YP_137248.1| - 0.00061 19.5 0.1 0.00089 19.0 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|55379398|ref|YP_137248.1| - 0.0059 16.3 0.0 0.0079 15.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|55379398|ref|YP_137248.1| - 0.03 14.1 0.0 0.071 12.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Sigma54_DBD PF04552.13 gi|55379398|ref|YP_137248.1| - 0.074 12.7 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 Sigma-54, DNA binding domain Fe_dep_repress PF01325.19 gi|55379398|ref|YP_137248.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|55379398|ref|YP_137248.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55379398|ref|YP_137248.1| - 0.17 11.8 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family SHOCT PF09851.9 gi|55379399|ref|YP_137249.1| - 3.4e-09 36.1 1.6 5e-09 35.6 1.6 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55379399|ref|YP_137249.1| - 5e-06 26.5 0.8 1.1e-05 25.4 0.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|55379399|ref|YP_137249.1| - 0.00047 20.1 0.6 0.00064 19.7 0.6 1.2 1 0 0 1 1 1 1 Gas vesicle protein G DUF3742 PF12553.8 gi|55379399|ref|YP_137249.1| - 0.0057 16.8 2.0 0.0083 16.2 1.7 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3742) CdvA PF18822.1 gi|55379399|ref|YP_137249.1| - 0.023 14.6 0.1 0.03 14.1 0.1 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DUF4191 PF13829.6 gi|55379399|ref|YP_137249.1| - 0.03 13.7 0.0 0.037 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) FA_desaturase PF00487.24 gi|55379399|ref|YP_137249.1| - 0.092 12.6 0.1 0.11 12.3 0.1 1.1 1 0 0 1 1 1 0 Fatty acid desaturase ABC_tran_2 PF16949.5 gi|55379399|ref|YP_137249.1| - 0.87 8.3 3.6 1.3 7.8 3.6 1.2 1 0 0 1 1 1 0 Putative ATP-binding cassette DUF2798 PF11391.8 gi|55379399|ref|YP_137249.1| - 1.1 9.3 6.5 1.7 8.7 6.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2798) TRM PF02005.16 gi|55379401|ref|YP_137251.1| - 4e-93 312.6 0.0 4.7e-93 312.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|55379401|ref|YP_137251.1| - 0.00037 20.1 0.0 0.00075 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|55379401|ref|YP_137251.1| - 0.067 13.9 0.1 0.16 12.7 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|55379401|ref|YP_137251.1| - 0.13 11.6 0.2 0.2 11.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UvrB_inter PF17757.1 gi|55379401|ref|YP_137251.1| - 0.21 11.8 0.1 0.54 10.5 0.0 1.7 2 0 0 2 2 2 0 UvrB interaction domain HisKA_7TM PF16927.5 gi|55379402|ref|YP_137252.1| - 1.8e-29 103.4 16.9 2.4e-29 103.0 16.9 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|55379402|ref|YP_137252.1| - 2.8e-13 50.4 0.0 1.5e-12 48.0 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|55379402|ref|YP_137252.1| - 1.7e-11 44.1 0.2 6.7e-10 39.0 0.2 2.6 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|55379402|ref|YP_137252.1| - 8.9e-09 35.6 0.6 5.2e-07 29.9 0.6 2.6 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|55379402|ref|YP_137252.1| - 2.5e-06 27.4 0.1 6.9e-06 26.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|55379402|ref|YP_137252.1| - 0.00014 21.8 0.2 0.0017 18.3 0.0 2.8 3 0 0 3 3 3 1 PAS domain PAS_9 PF13426.7 gi|55379402|ref|YP_137252.1| - 0.00019 21.6 0.0 0.0034 17.6 0.0 2.7 2 1 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|55379402|ref|YP_137252.1| - 0.0079 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain DUF559 PF04480.12 gi|55379402|ref|YP_137252.1| - 0.11 12.3 0.2 0.25 11.2 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF559) HisKA_4TM PF16926.5 gi|55379402|ref|YP_137252.1| - 0.35 10.4 0.1 0.35 10.4 0.1 2.9 4 1 0 4 4 4 0 Archaeal 4TM region of histidine kinase VEGFR-2_TMD PF17988.1 gi|55379403|ref|YP_137253.1| - 0.13 11.7 1.9 0.29 10.6 1.9 1.6 1 0 0 1 1 1 0 VEGFR-2 Transmembrane domain ADC PF06314.11 gi|55379404|ref|YP_137254.1| - 2e-17 63.5 0.1 2.8e-17 63.1 0.1 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.25 gi|55379405|ref|YP_137255.1| - 9e-45 152.5 0.0 1.2e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55379405|ref|YP_137255.1| - 1.1e-39 136.4 0.1 1.5e-39 135.9 0.1 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55379405|ref|YP_137255.1| - 4.1e-13 49.6 0.2 4.2e-12 46.3 0.2 2.0 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55379405|ref|YP_137255.1| - 9.4e-06 25.3 0.0 1.5e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|55379405|ref|YP_137255.1| - 2.3e-05 23.6 0.1 3.2e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1737 PF08410.10 gi|55379405|ref|YP_137255.1| - 0.0057 16.5 0.0 0.017 15.0 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1737) DUF2827 PF10933.8 gi|55379405|ref|YP_137255.1| - 0.045 12.4 0.0 0.079 11.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2827) P-II PF00543.22 gi|55379405|ref|YP_137255.1| - 0.13 12.9 0.0 6.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Nitrogen regulatory protein P-II PI-PLC-X PF00388.19 gi|55379405|ref|YP_137255.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain GATase PF00117.28 gi|55379406|ref|YP_137256.1| - 1e-19 71.1 0.0 1.4e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|55379406|ref|YP_137256.1| - 3e-08 33.5 0.1 1.8e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|55379406|ref|YP_137256.1| - 1.5e-06 28.2 0.0 0.0043 16.9 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 gi|55379406|ref|YP_137256.1| - 7.5e-05 22.6 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|55379406|ref|YP_137256.1| - 8.3e-05 22.4 0.3 0.015 15.0 0.1 2.4 2 1 0 2 2 2 2 Peptidase C26 UDG PF03167.19 gi|55379408|ref|YP_137258.1| - 6.6e-38 130.1 0.0 8e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Epimerase_2 PF02350.19 gi|55379408|ref|YP_137258.1| - 0.18 10.6 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase Ribonuc_L-PSP PF01042.21 gi|55379409|ref|YP_137259.1| - 2.3e-19 69.6 0.0 3e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Endoribonuclease L-PSP Histone_HNS PF00816.21 gi|55379409|ref|YP_137259.1| - 0.044 14.6 0.0 0.08 13.8 0.0 1.4 1 0 0 1 1 1 0 H-NS histone family DUF99 PF01949.16 gi|55379410|ref|YP_137260.1| - 5.1e-40 136.8 0.0 5.6e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 GvpG PF05120.12 gi|55379411|ref|YP_137261.1| - 0.27 11.3 4.9 0.56 10.3 4.8 1.7 1 1 0 1 1 1 0 Gas vesicle protein G Lactamase_B PF00753.27 gi|55379412|ref|YP_137262.1| - 2.2e-11 44.2 9.8 4.7e-09 36.5 9.8 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55379412|ref|YP_137262.1| - 3.5e-05 23.4 4.2 0.00013 21.6 4.2 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF5616 PF18481.1 gi|55379412|ref|YP_137262.1| - 0.021 15.2 0.0 1.4 9.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5616) Lactamase_B_3 PF13483.6 gi|55379412|ref|YP_137262.1| - 0.041 13.8 0.9 0.057 13.3 0.9 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|55379412|ref|YP_137262.1| - 0.13 12.7 0.1 0.34 11.3 0.0 1.5 1 1 0 2 2 2 0 Radical SAM superfamily HisKA_4TM PF16926.5 gi|55379413|ref|YP_137263.1| - 2.1e-07 30.7 10.8 4.8e-07 29.5 10.8 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase IclR PF01614.18 gi|55379413|ref|YP_137263.1| - 0.043 13.6 1.2 0.084 12.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial transcriptional regulator Acyl_transf_3 PF01757.22 gi|55379413|ref|YP_137263.1| - 0.096 11.7 1.7 0.13 11.3 1.7 1.1 1 0 0 1 1 1 0 Acyltransferase family Ribosomal_L40e PF01020.17 gi|55379414|ref|YP_137264.1| - 5.6e-08 32.5 4.2 6.5e-08 32.3 4.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|55379414|ref|YP_137264.1| - 0.00017 21.2 3.0 0.00023 20.8 3.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|55379414|ref|YP_137264.1| - 0.0005 20.0 1.5 0.0005 20.0 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon DHHC PF01529.20 gi|55379414|ref|YP_137264.1| - 0.046 13.8 1.3 0.055 13.6 1.3 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DNA_RNApol_7kD PF03604.13 gi|55379414|ref|YP_137264.1| - 0.17 11.6 6.1 0.32 10.7 6.1 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|55379414|ref|YP_137264.1| - 0.26 10.7 3.6 0.33 10.4 3.6 1.2 1 0 0 1 1 1 0 zinc-ribbon domain MR_MLE_C PF13378.6 gi|55379415|ref|YP_137265.1| - 0.16 11.5 0.0 0.55 9.8 0.0 1.9 2 0 0 2 2 2 0 Enolase C-terminal domain-like Ribo_biogen_C PF04034.13 gi|55379416|ref|YP_137266.1| - 3.4e-45 152.9 0.0 3.9e-45 152.7 0.0 1.0 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal DTW PF03942.15 gi|55379416|ref|YP_137266.1| - 0.12 12.0 0.0 0.83 9.3 0.0 1.9 1 1 0 1 1 1 0 DTW domain AhpC-TSA PF00578.21 gi|55379417|ref|YP_137267.1| - 3.5e-15 56.0 0.1 6.8e-15 55.1 0.1 1.5 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55379417|ref|YP_137267.1| - 5.9e-09 35.8 0.0 1.4e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Redoxin DUF1771 PF08590.10 gi|55379417|ref|YP_137267.1| - 0.018 15.4 1.5 0.018 15.4 1.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) DUF899 PF05988.12 gi|55379417|ref|YP_137267.1| - 0.059 12.9 0.0 0.14 11.7 0.0 1.6 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF899) HemY_N PF07219.13 gi|55379417|ref|YP_137267.1| - 1.7 8.9 4.0 1.4 9.2 0.2 2.4 2 0 0 2 2 2 0 HemY protein N-terminus TPR_16 PF13432.6 gi|55379417|ref|YP_137267.1| - 9.2 7.0 8.8 3.8 8.2 1.6 3.4 3 1 0 3 3 3 0 Tetratricopeptide repeat Methyltransf_25 PF13649.6 gi|55379419|ref|YP_137269.1| - 2.7e-12 47.2 0.0 4.7e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|55379419|ref|YP_137269.1| - 4.6e-12 46.4 0.0 7.2e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55379419|ref|YP_137269.1| - 1.4e-08 34.7 0.0 2e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379419|ref|YP_137269.1| - 5.4e-06 26.3 0.0 2.8e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55379419|ref|YP_137269.1| - 6.4e-05 23.6 0.0 0.00023 21.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|55379419|ref|YP_137269.1| - 0.0018 17.7 0.0 0.0032 16.9 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB TPMT PF05724.11 gi|55379419|ref|YP_137269.1| - 0.0045 16.7 0.0 0.0067 16.1 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|55379419|ref|YP_137269.1| - 0.0091 15.6 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Seryl_tRNA_N PF02403.22 gi|55379420|ref|YP_137270.1| - 7.1e-30 103.4 4.7 1.1e-29 102.8 4.7 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|55379420|ref|YP_137270.1| - 5.3e-25 88.4 0.0 2e-24 86.6 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) FapA PF03961.13 gi|55379420|ref|YP_137270.1| - 0.042 12.5 2.5 0.06 11.9 2.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Endotoxin_C2 PF18449.1 gi|55379420|ref|YP_137270.1| - 0.061 13.7 1.2 2.1 8.8 1.0 2.2 2 0 0 2 2 2 0 Delta endotoxin KELK PF15796.5 gi|55379420|ref|YP_137270.1| - 0.13 12.7 8.9 0.33 11.4 8.9 1.7 1 1 0 1 1 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Golgin_A5 PF09787.9 gi|55379420|ref|YP_137270.1| - 0.16 11.4 3.9 0.24 10.8 3.9 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 GreA_GreB_N PF03449.15 gi|55379420|ref|YP_137270.1| - 0.21 11.8 11.8 0.61 10.3 11.8 1.8 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal APG6_N PF17675.1 gi|55379420|ref|YP_137270.1| - 0.34 11.4 10.7 0.81 10.2 10.7 1.6 1 0 0 1 1 1 0 Apg6 coiled-coil region ZapB PF06005.12 gi|55379420|ref|YP_137270.1| - 0.66 10.5 15.4 1.6 9.2 0.4 2.9 2 2 2 4 4 3 0 Cell division protein ZapB UPF0242 PF06785.11 gi|55379420|ref|YP_137270.1| - 1.3 9.1 5.4 2 8.5 5.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TPR_MLP1_2 PF07926.12 gi|55379420|ref|YP_137270.1| - 1.6 8.8 9.9 3.1 7.9 9.9 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein HlyD_2 PF12700.7 gi|55379420|ref|YP_137270.1| - 1.8 7.2 3.8 2.6 6.7 3.8 1.1 1 0 0 1 1 1 0 HlyD family secretion protein UPF0184 PF03670.13 gi|55379420|ref|YP_137270.1| - 2.4 8.6 12.1 2.7 8.5 6.9 3.0 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0184) V-SNARE PF05008.15 gi|55379420|ref|YP_137270.1| - 4.2 7.8 9.2 1.3e+02 3.1 0.0 3.1 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Usp PF00582.26 gi|55379421|ref|YP_137271.1| - 7.1e-34 117.3 4.4 8.1e-34 117.1 4.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|55379421|ref|YP_137271.1| - 0.013 15.5 0.1 0.015 15.3 0.1 1.1 1 0 0 1 1 1 0 DNA photolyase Peripla_BP_6 PF13458.6 gi|55379421|ref|YP_137271.1| - 0.041 13.6 0.3 0.053 13.2 0.3 1.2 1 0 0 1 1 1 0 Periplasmic binding protein SRP54 PF00448.22 gi|55379421|ref|YP_137271.1| - 0.09 12.4 0.2 0.21 11.2 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain KicB PF03882.14 gi|55379421|ref|YP_137271.1| - 0.099 12.9 0.2 0.17 12.1 0.2 1.3 1 1 0 1 1 1 0 MukF winged-helix domain DXP_reductoisom PF02670.16 gi|55379421|ref|YP_137271.1| - 0.1 13.3 0.2 0.14 12.9 0.2 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lactamase_B PF00753.27 gi|55379422|ref|YP_137272.1| - 7.3e-24 84.9 10.8 1.2e-23 84.2 10.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55379422|ref|YP_137272.1| - 1.3e-05 24.8 1.0 3e-05 23.6 1.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TrkA_N PF02254.18 gi|55379423|ref|YP_137273.1| - 2.3e-32 111.7 2.1 3.6e-32 111.0 2.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|55379423|ref|YP_137273.1| - 3.1e-08 33.3 0.8 6.7e-08 32.3 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|55379423|ref|YP_137273.1| - 6.4e-07 29.8 0.4 2e-06 28.2 0.4 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|55379423|ref|YP_137273.1| - 4.8e-06 27.1 2.1 6.9e-05 23.4 1.1 2.6 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|55379423|ref|YP_137273.1| - 1.5e-05 24.6 0.1 2.5e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ApbA PF02558.16 gi|55379423|ref|YP_137273.1| - 6.9e-05 22.5 0.7 0.00021 20.9 0.1 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|55379423|ref|YP_137273.1| - 0.00013 21.6 0.1 0.00031 20.3 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain FAD_binding_3 PF01494.19 gi|55379423|ref|YP_137273.1| - 0.00032 20.0 0.4 0.00047 19.5 0.4 1.3 1 1 0 1 1 1 1 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|55379423|ref|YP_137273.1| - 0.002 18.4 0.5 0.0056 16.9 0.4 1.8 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|55379423|ref|YP_137273.1| - 0.0022 18.0 0.1 0.0046 16.9 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|55379423|ref|YP_137273.1| - 0.0029 16.9 0.8 0.0055 16.0 0.4 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55379423|ref|YP_137273.1| - 0.0045 17.5 1.2 0.021 15.4 0.8 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|55379423|ref|YP_137273.1| - 0.005 16.7 0.4 0.0089 15.9 0.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|55379423|ref|YP_137273.1| - 0.0056 15.8 0.6 0.0056 15.8 0.6 1.6 2 1 0 2 2 2 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|55379423|ref|YP_137273.1| - 0.0058 16.2 0.1 0.0086 15.7 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|55379423|ref|YP_137273.1| - 0.01 15.4 1.2 0.013 15.1 0.6 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|55379423|ref|YP_137273.1| - 0.012 15.9 0.1 0.034 14.4 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain XdhC_C PF13478.6 gi|55379423|ref|YP_137273.1| - 0.012 16.1 0.0 0.02 15.4 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_2 PF03446.15 gi|55379423|ref|YP_137273.1| - 0.015 15.4 0.3 0.03 14.5 0.3 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|55379423|ref|YP_137273.1| - 0.021 14.2 0.1 0.05 13.0 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|55379423|ref|YP_137273.1| - 0.023 13.8 0.1 0.031 13.3 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Rossmann-like PF10727.9 gi|55379423|ref|YP_137273.1| - 0.025 14.5 0.3 0.095 12.6 0.3 2.0 1 0 0 1 1 1 0 Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|55379423|ref|YP_137273.1| - 0.026 13.8 1.3 0.099 11.9 1.3 2.0 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|55379423|ref|YP_137273.1| - 0.044 13.9 0.2 0.11 12.5 0.2 1.7 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HI0933_like PF03486.14 gi|55379423|ref|YP_137273.1| - 0.056 12.1 0.1 0.09 11.5 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein CbiJ PF02571.14 gi|55379423|ref|YP_137273.1| - 0.068 12.6 0.7 0.12 11.8 0.6 1.5 1 1 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK Semialdhyde_dh PF01118.24 gi|55379423|ref|YP_137273.1| - 0.094 13.2 0.3 0.21 12.1 0.3 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|55379423|ref|YP_137273.1| - 0.097 11.9 0.2 0.27 10.5 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.13 gi|55379423|ref|YP_137273.1| - 0.2 11.2 2.1 0.67 9.5 0.2 2.1 1 1 1 2 2 2 0 NmrA-like family 4HBT PF03061.22 gi|55379424|ref|YP_137274.1| - 2.1e-14 53.6 0.4 3e-14 53.1 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|55379424|ref|YP_137274.1| - 1.1e-06 28.8 0.0 1.7e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|55379424|ref|YP_137274.1| - 6.2e-05 23.4 0.1 7.4e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily EF-hand_5 PF13202.6 gi|55379425|ref|YP_137275.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 EF hand NUDIX PF00293.28 gi|55379426|ref|YP_137276.1| - 1.2e-11 44.7 0.2 1.5e-11 44.5 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Fungal_trans_2 PF11951.8 gi|55379426|ref|YP_137276.1| - 0.15 10.8 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Fungal specific transcription factor domain Thiolase_N PF00108.23 gi|55379427|ref|YP_137277.1| - 1.4e-75 254.1 1.1 2.1e-75 253.5 1.1 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|55379427|ref|YP_137277.1| - 2.5e-42 143.4 0.0 1.2e-41 141.2 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|55379427|ref|YP_137277.1| - 5.9e-06 26.0 0.3 1.5e-05 24.8 0.3 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain zf-FLZ PF04570.14 gi|55379427|ref|YP_137277.1| - 0.0088 15.5 0.1 0.016 14.7 0.1 1.4 1 0 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 DDE_Tnp_IS66 PF03050.14 gi|55379427|ref|YP_137277.1| - 0.097 12.1 0.1 0.17 11.4 0.0 1.4 1 1 0 1 1 1 0 Transposase IS66 family ACP_syn_III PF08545.10 gi|55379427|ref|YP_137277.1| - 0.12 12.3 2.8 0.7 9.8 0.0 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Pyridox_ox_2 PF12900.7 gi|55379428|ref|YP_137278.1| - 1.7e-17 63.8 0.0 1.9e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|55379428|ref|YP_137278.1| - 4.9e-05 23.4 0.0 7.3e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1508 PF07411.12 gi|55379430|ref|YP_137279.1| - 1.2e-87 287.5 20.0 2e-17 62.7 0.4 5.4 5 0 0 5 5 5 5 Domain of unknown function (DUF1508) Stimulus_sens_1 PF13756.6 gi|55379430|ref|YP_137279.1| - 0.00051 20.6 12.0 0.52 10.9 0.1 6.0 4 2 1 5 5 5 1 Stimulus-sensing domain DUF5110 PF17137.4 gi|55379430|ref|YP_137279.1| - 0.0021 18.3 0.5 9.8 6.5 0.0 4.4 4 1 0 4 4 4 1 Domain of unknown function (DUF5110) DUF2892 PF11127.8 gi|55379430|ref|YP_137279.1| - 0.0048 16.9 10.3 0.054 13.5 0.6 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2892) DUF2157 PF09925.9 gi|55379430|ref|YP_137279.1| - 0.011 15.6 6.2 2.6 7.8 3.5 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) Tombus_P19 PF03220.13 gi|55379430|ref|YP_137279.1| - 0.012 15.4 0.4 5 6.8 0.0 3.1 3 1 1 4 4 4 0 Tombusvirus P19 core protein Spore_III_AF PF09581.10 gi|55379430|ref|YP_137279.1| - 0.019 15.0 0.3 0.044 13.8 0.3 1.5 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) TMEM238 PF15125.6 gi|55379430|ref|YP_137279.1| - 0.065 13.4 0.6 0.065 13.4 0.6 3.0 3 0 0 3 3 3 0 TMEM238 protein family UPF0242 PF06785.11 gi|55379430|ref|YP_137279.1| - 0.12 12.5 0.2 0.69 10.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus ATP-synt_B PF00430.18 gi|55379430|ref|YP_137279.1| - 0.32 11.1 21.2 0.052 13.6 14.6 2.6 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) DUF3185 PF11381.8 gi|55379430|ref|YP_137279.1| - 1 9.4 6.1 0.71 9.9 0.2 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) DUF3748 PF12566.8 gi|55379430|ref|YP_137279.1| - 1.3 9.0 4.2 4.7 7.2 0.1 3.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3748) BAF1_ABF1 PF04684.13 gi|55379430|ref|YP_137279.1| - 3.7 6.5 8.0 5.6 5.9 8.0 1.1 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor YrhK PF14145.6 gi|55379430|ref|YP_137279.1| - 5.1 7.0 8.9 26 4.8 0.4 3.4 2 1 1 3 3 3 0 YrhK-like protein Wzy_C PF04932.15 gi|55379430|ref|YP_137279.1| - 7.7 6.1 7.1 22 4.7 6.8 2.0 1 1 1 2 2 2 0 O-Antigen ligase DUF4131 PF13567.6 gi|55379430|ref|YP_137279.1| - 7.9 6.1 8.0 36 4.0 5.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) AAA PF00004.29 gi|55379429|ref|YP_137280.1| - 1.6e-38 132.1 0.0 3.4e-38 131.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55379429|ref|YP_137280.1| - 3.7e-11 42.6 0.0 1.3e-10 40.9 0.0 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|55379429|ref|YP_137280.1| - 5.5e-06 26.4 0.0 3.1e-05 24.0 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|55379429|ref|YP_137280.1| - 0.00073 19.3 0.0 0.0015 18.3 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|55379429|ref|YP_137280.1| - 0.00076 19.9 4.1 0.0016 18.8 1.0 3.0 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379429|ref|YP_137280.1| - 0.00083 19.6 0.3 0.029 14.6 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|55379429|ref|YP_137280.1| - 0.0009 19.5 0.3 0.011 16.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|55379429|ref|YP_137280.1| - 0.0011 19.1 0.1 0.0038 17.4 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|55379429|ref|YP_137280.1| - 0.0012 19.4 0.1 0.0053 17.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|55379429|ref|YP_137280.1| - 0.0025 17.4 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 gi|55379429|ref|YP_137280.1| - 0.0051 17.0 0.0 0.014 15.6 0.0 1.7 1 0 0 1 1 1 1 Cytidylate kinase-like family IstB_IS21 PF01695.17 gi|55379429|ref|YP_137280.1| - 0.0052 16.5 0.0 0.012 15.3 0.0 1.6 1 1 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|55379429|ref|YP_137280.1| - 0.0054 16.0 0.0 0.0094 15.2 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain DUF815 PF05673.13 gi|55379429|ref|YP_137280.1| - 0.0068 15.6 0.1 0.011 14.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|55379429|ref|YP_137280.1| - 0.0071 16.5 0.9 0.012 15.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Cytidylate_kin PF02224.18 gi|55379429|ref|YP_137280.1| - 0.011 15.5 0.6 0.077 12.7 0.0 2.5 2 1 1 3 3 3 0 Cytidylate kinase AAA_25 PF13481.6 gi|55379429|ref|YP_137280.1| - 0.014 14.9 0.5 0.1 12.2 0.1 2.6 1 1 1 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|55379429|ref|YP_137280.1| - 0.018 14.8 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|55379429|ref|YP_137280.1| - 0.02 14.3 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|55379429|ref|YP_137280.1| - 0.022 15.2 0.0 0.083 13.3 0.0 2.0 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|55379429|ref|YP_137280.1| - 0.024 14.7 0.0 0.063 13.4 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase ABC_tran PF00005.27 gi|55379429|ref|YP_137280.1| - 0.03 14.9 0.0 0.073 13.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|55379429|ref|YP_137280.1| - 0.043 13.9 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_3 PF07726.11 gi|55379429|ref|YP_137280.1| - 0.058 13.3 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|55379429|ref|YP_137280.1| - 0.069 13.5 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|55379429|ref|YP_137280.1| - 0.075 12.1 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.6 gi|55379429|ref|YP_137280.1| - 0.091 12.9 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_8 PF12780.7 gi|55379429|ref|YP_137280.1| - 0.17 11.2 0.0 0.31 10.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 Lactamase_B_2 PF12706.7 gi|55379432|ref|YP_137282.1| - 2.2e-19 69.8 1.6 2.8e-19 69.4 1.6 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|55379432|ref|YP_137282.1| - 0.00039 20.5 3.4 0.00057 19.9 3.4 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_20 PF12840.7 gi|55379436|ref|YP_137286.1| - 1.9e-05 24.6 0.0 5e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|55379436|ref|YP_137286.1| - 0.13 12.3 8.2 0.27 11.2 3.8 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|55379436|ref|YP_137286.1| - 2.8 8.0 6.8 12 6.0 0.1 3.4 3 0 0 3 3 3 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|55379436|ref|YP_137286.1| - 3.2 7.6 6.8 31 4.4 0.0 4.1 4 0 0 4 4 4 0 zinc-ribbon domain eIF2_C PF09173.11 gi|55379437|ref|YP_137287.1| - 1.1e-29 102.5 0.0 2.2e-29 101.5 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|55379437|ref|YP_137287.1| - 3.2e-29 101.9 2.6 1.2e-28 100.0 2.6 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|55379437|ref|YP_137287.1| - 3.1e-06 27.2 0.2 0.00048 20.1 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|55379437|ref|YP_137287.1| - 9.5e-05 22.5 0.0 0.00026 21.0 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 gi|55379437|ref|YP_137287.1| - 0.00033 21.0 1.2 0.00098 19.5 1.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 FeoB_N PF02421.18 gi|55379437|ref|YP_137287.1| - 0.0063 16.0 0.3 2.3 7.8 0.1 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|55379437|ref|YP_137287.1| - 0.022 14.5 0.2 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|55379437|ref|YP_137287.1| - 0.05 13.0 0.1 1.4 8.3 0.1 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|55379437|ref|YP_137287.1| - 0.068 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PIN_9 PF18477.1 gi|55379438|ref|YP_137288.1| - 1.9e-41 141.0 0.5 2.1e-41 140.9 0.5 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|55379438|ref|YP_137288.1| - 4.6e-05 23.1 0.6 6.2e-05 22.7 0.6 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.6 gi|55379438|ref|YP_137288.1| - 0.047 14.0 0.0 0.091 13.1 0.0 1.6 1 1 0 1 1 1 0 PIN domain PIN_3 PF13470.6 gi|55379438|ref|YP_137288.1| - 0.063 14.0 7.9 0.037 14.8 4.4 1.9 1 1 1 2 2 2 0 PIN domain S1 PF00575.23 gi|55379439|ref|YP_137289.1| - 7.5e-15 55.0 0.2 1.4e-14 54.1 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.17 gi|55379439|ref|YP_137289.1| - 4.9e-13 49.2 0.0 8e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 RNA_pol_Rbc25 PF08292.12 gi|55379439|ref|YP_137289.1| - 0.033 14.4 0.0 0.049 13.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 S1_2 PF13509.6 gi|55379439|ref|YP_137289.1| - 0.11 12.6 0.0 2.3 8.3 0.0 2.3 1 1 1 2 2 2 0 S1 domain KH_6 PF15985.5 gi|55379439|ref|YP_137289.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 KH domain PUA_3 PF17785.1 gi|55379439|ref|YP_137289.1| - 0.2 11.5 0.9 0.87 9.4 0.9 2.2 1 1 0 1 1 1 0 PUA-like domain Spt4 PF06093.13 gi|55379440|ref|YP_137290.1| - 2.6e-13 49.9 0.2 3.3e-13 49.5 0.2 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Nudix_N_2 PF14803.6 gi|55379440|ref|YP_137290.1| - 0.66 9.9 6.2 1.8 8.5 1.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF359 PF04019.12 gi|55379441|ref|YP_137291.1| - 7e-40 135.6 0.0 7.9e-40 135.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF359) UBA_4 PF14555.6 gi|55379441|ref|YP_137291.1| - 0.016 15.0 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain Penicil_amidase PF01804.18 gi|55379441|ref|YP_137291.1| - 0.082 11.9 0.1 0.092 11.7 0.1 1.0 1 0 0 1 1 1 0 Penicillin amidase zf-C2HC5 PF06221.13 gi|55379442|ref|YP_137292.1| - 0.014 15.3 1.9 0.018 15.0 1.9 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf_UBZ PF18439.1 gi|55379442|ref|YP_137292.1| - 0.021 14.4 3.6 1.3 8.7 0.9 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|55379442|ref|YP_137292.1| - 0.051 13.6 5.6 0.062 13.3 5.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.16 gi|55379442|ref|YP_137292.1| - 0.07 13.0 1.0 0.07 13.0 1.0 2.1 1 1 1 2 2 2 0 HIT zinc finger HypA PF01155.19 gi|55379442|ref|YP_137292.1| - 0.23 11.5 4.7 0.26 11.3 4.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|55379442|ref|YP_137292.1| - 2.6 8.7 5.2 0.74 10.4 1.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0020 PF01170.18 gi|55379443|ref|YP_137293.1| - 7.7e-20 71.4 0.1 1.1e-18 67.6 0.0 2.6 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|55379443|ref|YP_137293.1| - 2.8e-05 24.7 0.0 0.00013 22.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|55379443|ref|YP_137293.1| - 0.00018 21.1 0.0 0.042 13.3 0.0 2.4 1 1 0 2 2 2 2 RRNA methyltransferase AviRa THUMP PF02926.17 gi|55379443|ref|YP_137293.1| - 0.0051 16.9 0.0 0.0086 16.2 0.0 1.3 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.12 gi|55379443|ref|YP_137293.1| - 0.0075 16.9 0.0 0.02 15.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379443|ref|YP_137293.1| - 0.026 14.3 0.0 0.12 12.1 0.1 1.8 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.16 gi|55379443|ref|YP_137293.1| - 0.092 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DUF4072 PF13284.6 gi|55379443|ref|YP_137293.1| - 0.15 12.6 2.9 0.23 11.9 1.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4072) Cons_hypoth95 PF03602.15 gi|55379443|ref|YP_137293.1| - 0.19 11.3 0.0 0.69 9.5 0.0 1.7 1 1 0 1 1 1 0 Conserved hypothetical protein 95 HisG PF01634.18 gi|55379444|ref|YP_137294.1| - 1.2e-50 171.6 0.4 1.8e-50 171.0 0.4 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|55379444|ref|YP_137294.1| - 2e-26 91.9 0.0 3.6e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 HisG, C-terminal domain MFS_1 PF07690.16 gi|55379446|ref|YP_137295.1| - 2e-40 138.8 52.6 4.6e-30 104.7 29.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|55379446|ref|YP_137295.1| - 0.0012 17.8 5.8 0.0012 17.8 5.8 2.1 1 1 0 2 2 2 1 MFS_1 like family OATP PF03137.20 gi|55379446|ref|YP_137295.1| - 0.016 13.5 1.6 0.044 12.1 0.1 2.0 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family LacY_symp PF01306.19 gi|55379446|ref|YP_137295.1| - 0.2 10.4 7.7 0.31 9.8 0.1 2.5 2 1 0 2 2 2 0 LacY proton/sugar symporter Amidohydro_1 PF01979.20 gi|55379445|ref|YP_137296.1| - 9.5e-72 242.2 4.6 1.1e-71 242.0 4.6 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|55379445|ref|YP_137296.1| - 3.7e-19 69.6 19.7 6e-15 55.7 12.8 2.5 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|55379445|ref|YP_137296.1| - 3.7e-06 26.5 0.0 8.1e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase PMSI1 PF15322.6 gi|55379447|ref|YP_137297.1| - 0.11 11.9 0.9 0.22 10.9 0.9 1.4 1 0 0 1 1 1 0 Protein missing in infertile sperm 1, putative AdoHcyase PF05221.17 gi|55379448|ref|YP_137298.1| - 7e-52 176.4 0.0 6.4e-26 91.2 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|55379448|ref|YP_137298.1| - 3.2e-48 163.8 0.4 3.2e-48 163.8 0.4 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|55379448|ref|YP_137298.1| - 4.2e-10 39.3 0.1 7.4e-10 38.5 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|55379448|ref|YP_137298.1| - 1.2e-05 25.0 0.6 2.3e-05 24.1 0.2 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|55379448|ref|YP_137298.1| - 0.0023 18.0 0.0 0.0042 17.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|55379448|ref|YP_137298.1| - 0.0045 16.7 0.2 0.0073 16.1 0.2 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|55379448|ref|YP_137298.1| - 0.019 15.2 0.1 0.042 14.1 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain Urocanase PF01175.18 gi|55379448|ref|YP_137298.1| - 0.066 12.8 0.2 0.12 12.0 0.2 1.3 1 0 0 1 1 1 0 Urocanase Rossmann-like domain Hexapep PF00132.24 gi|55379449|ref|YP_137299.1| - 2.1e-15 55.7 9.0 2.8e-09 36.3 2.1 3.9 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55379449|ref|YP_137299.1| - 1.4e-08 34.3 11.3 3.8e-07 29.8 3.0 3.7 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|55379449|ref|YP_137299.1| - 0.0086 15.1 0.0 0.017 14.1 0.0 1.5 1 1 0 1 1 1 1 L-fucokinase DUF4954 PF16314.5 gi|55379449|ref|YP_137299.1| - 0.16 10.1 1.8 0.24 9.5 0.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) DUF2613 PF11021.8 gi|55379449|ref|YP_137299.1| - 0.5 10.5 5.9 1.2 9.2 5.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DNA_primase_lrg PF04104.14 gi|55379451|ref|YP_137301.1| - 2.1e-36 125.7 0.0 3.7e-36 124.9 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Siah-Interact_N PF09032.11 gi|55379451|ref|YP_137301.1| - 0.06 13.7 0.7 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 Siah interacting protein, N terminal MMPL PF03176.15 gi|55379452|ref|YP_137302.1| - 0.097 11.6 6.3 0.11 11.4 6.3 1.0 1 0 0 1 1 1 0 MMPL family Tad PF13400.6 gi|55379452|ref|YP_137302.1| - 1.8 8.9 8.7 3.5 8.0 2.2 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF3040 PF11239.8 gi|55379452|ref|YP_137302.1| - 5.9 7.2 7.2 7.9 6.8 7.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) SWIM PF04434.17 gi|55379453|ref|YP_137303.1| - 0.00013 21.6 0.1 0.00026 20.6 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger Nudix_N_2 PF14803.6 gi|55379453|ref|YP_137303.1| - 0.0075 16.2 0.1 0.0075 16.2 0.1 2.4 3 0 0 3 3 3 1 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|55379453|ref|YP_137303.1| - 0.11 12.6 1.7 0.28 11.3 1.7 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-NADH-PPase PF09297.11 gi|55379453|ref|YP_137303.1| - 5.6 6.7 7.2 21 4.9 2.4 3.0 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Hjc PF01870.18 gi|55379454|ref|YP_137304.1| - 7.1e-30 102.9 0.0 9.6e-30 102.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF4382 PF14321.6 gi|55379455|ref|YP_137305.1| - 4.5e-22 78.8 5.2 4.5e-22 78.8 5.2 2.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4382) RR_TM4-6 PF06459.12 gi|55379455|ref|YP_137305.1| - 2.9 7.7 12.5 0.75 9.6 3.4 2.1 2 0 0 2 2 2 0 Ryanodine Receptor TM 4-6 Virul_fac_BrkB PF03631.15 gi|55379456|ref|YP_137306.1| - 0.0013 18.4 4.2 0.0018 17.9 4.2 1.2 1 0 0 1 1 1 1 Virulence factor BrkB DUF2157 PF09925.9 gi|55379456|ref|YP_137306.1| - 0.35 10.6 7.2 0.35 10.7 2.8 2.3 1 1 0 2 2 2 0 Predicted membrane protein (DUF2157) Glucos_trans_II PF14264.6 gi|55379456|ref|YP_137306.1| - 0.38 10.1 3.5 0.3 10.4 1.6 1.8 2 1 0 2 2 2 0 Glucosyl transferase GtrII YtpI PF14007.6 gi|55379456|ref|YP_137306.1| - 3.4 7.9 5.2 11 6.3 0.2 3.0 3 0 0 3 3 3 0 YtpI-like protein Abhydrolase_1 PF00561.20 gi|55379457|ref|YP_137307.1| - 1.6e-13 50.9 0.1 3.2e-12 46.6 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|55379457|ref|YP_137307.1| - 3.7e-12 47.3 11.8 4.6e-12 47.0 11.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|55379457|ref|YP_137307.1| - 5.3e-08 32.4 0.0 7.6e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 PGAP1 PF07819.13 gi|55379457|ref|YP_137307.1| - 0.065 12.9 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein PD40 PF07676.12 gi|55379457|ref|YP_137307.1| - 0.099 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 WD40-like Beta Propeller Repeat Abhydrolase_4 PF08386.10 gi|55379457|ref|YP_137307.1| - 0.13 12.4 0.2 0.26 11.4 0.2 1.5 1 1 0 1 1 1 0 TAP-like protein FSH1 PF03959.13 gi|55379457|ref|YP_137307.1| - 0.14 11.8 0.0 2.1 7.9 0.0 2.0 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PCNA_N PF00705.18 gi|55379458|ref|YP_137308.1| - 2.5e-09 36.9 0.1 4.7e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|55379458|ref|YP_137308.1| - 0.00012 22.3 0.0 0.0003 20.9 0.0 1.9 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|55379458|ref|YP_137308.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad9 Cu-oxidase_3 PF07732.15 gi|55379459|ref|YP_137309.1| - 3.7e-14 52.8 0.1 6.6e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|55379459|ref|YP_137309.1| - 4.4e-09 36.2 0.5 1.3e-05 25.0 0.0 2.9 3 1 0 3 3 3 2 Multicopper oxidase Copper-bind PF00127.20 gi|55379459|ref|YP_137309.1| - 7.7e-05 23.1 0.5 0.0024 18.3 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|55379459|ref|YP_137309.1| - 0.0014 18.7 0.0 0.0043 17.1 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain FtsJ PF01728.19 gi|55379460|ref|YP_137310.1| - 4.4e-54 183.3 0.0 5.2e-54 183.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|55379460|ref|YP_137310.1| - 1.2e-14 54.1 1.6 2.3e-14 53.1 1.6 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|55379460|ref|YP_137310.1| - 0.006 16.4 0.0 0.028 14.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55379460|ref|YP_137310.1| - 0.068 13.9 0.1 0.35 11.6 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain Vut_1 PF02592.15 gi|55379461|ref|YP_137311.1| - 6.1e-51 172.7 6.1 6.1e-51 172.7 6.1 1.7 2 0 0 2 2 2 1 Putative vitamin uptake transporter RHH_1 PF01402.21 gi|55379462|ref|YP_137312.1| - 5.1e-05 23.0 0.5 9.9e-05 22.1 0.1 1.7 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|55379462|ref|YP_137312.1| - 0.011 15.9 0.0 0.012 15.8 0.0 1.0 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family TatC PF00902.18 gi|55379463|ref|YP_137313.1| - 1e-64 218.2 49.4 8.3e-41 140.1 13.1 2.8 3 1 0 3 3 3 2 Sec-independent protein translocase protein (TatC) TatC PF00902.18 gi|55379464|ref|YP_137314.1| - 1.3e-44 152.5 13.7 1.3e-44 152.5 13.7 2.5 3 0 0 3 3 3 1 Sec-independent protein translocase protein (TatC) DHHC PF01529.20 gi|55379464|ref|YP_137314.1| - 0.12 12.5 4.2 0.3 11.2 0.8 2.3 2 0 0 2 2 2 0 DHHC palmitoyltransferase MadM PF03818.13 gi|55379464|ref|YP_137314.1| - 3.3 7.7 6.8 21 5.1 0.3 3.7 3 0 0 3 3 3 0 Malonate/sodium symporter MadM subunit His_Phos_1 PF00300.22 gi|55379465|ref|YP_137315.1| - 6.4e-46 156.5 0.2 7.2e-46 156.3 0.2 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.22 gi|55379465|ref|YP_137315.1| - 0.0051 16.2 0.1 0.0079 15.6 0.1 1.3 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) tRNA_Me_trans PF03054.16 gi|55379466|ref|YP_137316.1| - 2.3e-09 36.5 0.1 8.3e-06 24.8 0.2 2.7 2 1 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|55379466|ref|YP_137316.1| - 3.9e-09 36.7 0.3 6.3e-09 35.9 0.3 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|55379466|ref|YP_137316.1| - 5.8e-09 35.4 0.0 1.1e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|55379466|ref|YP_137316.1| - 0.00014 21.4 0.0 0.00044 19.8 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|55379466|ref|YP_137316.1| - 0.0037 17.0 0.2 0.011 15.6 0.1 1.9 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|55379466|ref|YP_137316.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase QueH PF02677.14 gi|55379466|ref|YP_137316.1| - 0.025 14.7 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH PAPS_reduct PF01507.19 gi|55379466|ref|YP_137316.1| - 0.16 12.0 0.0 0.32 11.0 0.0 1.5 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|55379466|ref|YP_137316.1| - 0.17 11.4 0.0 0.31 10.6 0.0 1.4 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) HHH_5 PF14520.6 gi|55379467|ref|YP_137317.1| - 3.5e-07 30.7 0.4 3.5e-07 30.7 0.4 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain MutS_V PF00488.21 gi|55379467|ref|YP_137317.1| - 2e-05 24.7 0.0 0.00017 21.7 0.0 2.2 2 0 0 2 2 2 1 MutS domain V HHH PF00633.23 gi|55379467|ref|YP_137317.1| - 0.00011 21.9 3.9 0.0045 16.8 0.1 3.4 3 0 0 3 3 3 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|55379467|ref|YP_137317.1| - 0.074 13.4 0.0 0.2 12.0 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif DUF1598 PF07643.11 gi|55379467|ref|YP_137317.1| - 0.14 12.5 0.0 3.6 7.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1598) PCP_red PF08369.10 gi|55379467|ref|YP_137317.1| - 4.5 7.6 6.4 4.1 7.7 0.2 3.7 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit AAA_16 PF13191.6 gi|55379468|ref|YP_137318.1| - 6.1e-12 46.3 0.4 1.1e-09 38.9 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379468|ref|YP_137318.1| - 3.3e-09 37.1 0.0 6.8e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379468|ref|YP_137318.1| - 1.8e-06 28.4 0.0 4.2e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|55379468|ref|YP_137318.1| - 3.5e-05 23.7 0.0 0.00026 20.9 0.0 2.4 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_30 PF13604.6 gi|55379468|ref|YP_137318.1| - 0.0025 17.6 0.1 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|55379468|ref|YP_137318.1| - 0.0032 17.0 0.0 0.024 14.2 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region Rad17 PF03215.15 gi|55379468|ref|YP_137318.1| - 0.0045 16.9 0.0 0.028 14.4 0.0 2.1 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_35 PF14516.6 gi|55379468|ref|YP_137318.1| - 0.0052 15.7 0.1 0.043 12.7 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain Sigma54_activat PF00158.26 gi|55379468|ref|YP_137318.1| - 0.0058 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55379468|ref|YP_137318.1| - 0.0085 15.9 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49_C PF17856.1 gi|55379468|ref|YP_137318.1| - 0.011 15.9 0.0 0.031 14.4 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain Gtr1_RagA PF04670.12 gi|55379468|ref|YP_137318.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_33 PF13671.6 gi|55379468|ref|YP_137318.1| - 0.012 15.8 0.0 0.025 14.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|55379468|ref|YP_137318.1| - 0.012 14.7 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|55379468|ref|YP_137318.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DUF815 PF05673.13 gi|55379468|ref|YP_137318.1| - 0.016 14.4 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|55379468|ref|YP_137318.1| - 0.021 14.1 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|55379468|ref|YP_137318.1| - 0.032 14.0 0.0 0.07 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|55379468|ref|YP_137318.1| - 0.035 14.1 0.1 0.21 11.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|55379468|ref|YP_137318.1| - 0.06 13.7 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RP854 PF17460.2 gi|55379468|ref|YP_137318.1| - 0.068 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein RP854 AAA_5 PF07728.14 gi|55379468|ref|YP_137318.1| - 0.079 13.0 0.0 0.23 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|55379468|ref|YP_137318.1| - 0.089 13.2 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|55379468|ref|YP_137318.1| - 0.09 12.5 0.5 2.2 8.0 0.5 2.4 1 1 0 1 1 1 0 IstB-like ATP binding protein DUF3558 PF12079.8 gi|55379469|ref|YP_137319.1| - 0.27 11.2 4.3 0.46 10.5 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) Ribonuc_L-PSP PF01042.21 gi|55379472|ref|YP_137322.1| - 9e-27 93.5 0.6 9.9e-27 93.4 0.6 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP MatE PF01554.18 gi|55379473|ref|YP_137323.1| - 5.4e-52 175.7 20.8 1.5e-28 99.5 6.3 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|55379473|ref|YP_137323.1| - 5.5e-07 29.7 10.4 5.5e-07 29.7 10.4 4.9 3 2 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|55379473|ref|YP_137323.1| - 9.5e-06 24.5 13.0 7e-05 21.6 8.7 2.2 2 0 0 2 2 2 2 Lipid II flippase MurJ NADH_dh_m_C1 PF15088.6 gi|55379473|ref|YP_137323.1| - 0.29 10.8 1.8 6.6 6.4 0.7 2.6 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial SBP_bac_8 PF13416.6 gi|55379474|ref|YP_137324.1| - 8.4e-22 78.3 0.0 1.1e-21 77.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55379474|ref|YP_137324.1| - 1.8e-11 44.6 0.1 3e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|55379474|ref|YP_137324.1| - 3.2e-11 43.1 0.0 6.9e-11 42.0 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|55379474|ref|YP_137324.1| - 0.0013 18.5 0.1 0.0031 17.3 0.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55379474|ref|YP_137324.1| - 0.017 14.9 6.6 0.017 14.9 6.6 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|55379475|ref|YP_137325.1| - 2.3e-23 83.2 0.0 3.3e-23 82.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|55379475|ref|YP_137325.1| - 8e-11 42.0 3.1 4.1e-09 36.5 0.5 3.7 1 1 1 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|55379475|ref|YP_137325.1| - 0.027 13.9 0.0 0.033 13.6 0.0 1.1 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|55379475|ref|YP_137325.1| - 0.035 13.9 0.0 0.046 13.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|55379475|ref|YP_137325.1| - 0.054 13.8 2.5 7.7 6.9 0.3 2.8 3 0 0 3 3 3 0 TOBE domain BPD_transp_1 PF00528.22 gi|55379476|ref|YP_137326.1| - 3.5e-15 56.2 17.7 9.8e-15 54.8 17.7 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55379477|ref|YP_137327.1| - 2e-13 50.5 19.7 2e-13 50.5 19.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2645 PF10840.8 gi|55379477|ref|YP_137327.1| - 1.6 9.4 4.9 5.3 7.7 0.2 2.7 2 1 0 3 3 3 0 Protein of unknown function (DUF2645) MaoC_dehydratas PF01575.19 gi|55379478|ref|YP_137328.1| - 8.5e-07 28.6 0.0 3.1e-06 26.8 0.0 1.8 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 gi|55379478|ref|YP_137328.1| - 0.0017 18.7 0.2 0.0032 17.8 0.0 1.5 2 0 0 2 2 2 1 Thioesterase superfamily DUF5029 PF16432.5 gi|55379478|ref|YP_137328.1| - 0.035 13.7 0.0 0.041 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5029) Fer4_15 PF13459.6 gi|55379479|ref|YP_137329.1| - 2.1e-21 76.4 5.5 2.5e-21 76.2 5.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|55379479|ref|YP_137329.1| - 1.2e-07 32.2 2.5 2.3e-07 31.2 2.5 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|55379479|ref|YP_137329.1| - 0.054 13.3 1.7 2.8 7.9 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DEAD PF00270.29 gi|55379480|ref|YP_137330.1| - 4.2e-23 82.0 0.0 7.3e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|55379480|ref|YP_137330.1| - 4.1e-07 30.3 0.0 7.2e-06 26.3 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|55379480|ref|YP_137330.1| - 5.3e-05 23.7 1.7 0.00015 22.3 0.2 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|55379480|ref|YP_137330.1| - 0.0036 17.1 0.1 0.012 15.5 0.1 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda CGI-121 PF08617.10 gi|55379481|ref|YP_137331.1| - 3.3e-11 43.6 0.0 3.9e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Rubi_NSP_C PF12601.8 gi|55379481|ref|YP_137331.1| - 0.076 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Rubivirus non-structural protein Oxidored_FMN PF00724.20 gi|55379483|ref|YP_137333.1| - 9.9e-21 74.4 0.0 5.4e-19 68.7 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|55379483|ref|YP_137333.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Abhydrolase_6 PF12697.7 gi|55379484|ref|YP_137334.1| - 2e-27 97.2 8.1 2.4e-27 97.0 8.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|55379484|ref|YP_137334.1| - 2.7e-18 66.5 0.1 7e-17 61.9 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|55379484|ref|YP_137334.1| - 9.7e-14 51.2 0.0 1.9e-12 47.0 0.0 2.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|55379484|ref|YP_137334.1| - 0.0071 16.5 0.0 0.0089 16.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_2 PF02230.16 gi|55379484|ref|YP_137334.1| - 0.0074 16.1 0.0 2 8.1 0.0 3.0 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|55379484|ref|YP_137334.1| - 0.02 15.0 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_5 PF12695.7 gi|55379484|ref|YP_137334.1| - 0.11 12.2 0.0 0.85 9.4 0.0 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase family Ndr PF03096.14 gi|55379484|ref|YP_137334.1| - 0.22 10.2 0.0 0.52 9.0 0.0 1.8 1 1 0 1 1 1 0 Ndr family MaoC_dehydratas PF01575.19 gi|55379485|ref|YP_137335.1| - 4.4e-24 84.4 0.0 7.9e-24 83.6 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|55379485|ref|YP_137335.1| - 4.9e-12 46.1 0.0 1.9e-11 44.2 0.0 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|55379485|ref|YP_137335.1| - 0.0099 16.2 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 Thioesterase superfamily AbrB-like PF14250.6 gi|55379486|ref|YP_137336.1| - 0.028 14.5 0.0 0.04 14.0 0.0 1.3 1 1 0 1 1 1 0 AbrB-like transcriptional regulator MazE_antitoxin PF04014.18 gi|55379486|ref|YP_137336.1| - 0.045 13.7 0.8 0.11 12.4 0.8 1.6 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin FlxA PF14282.6 gi|55379487|ref|YP_137337.1| - 0.00018 21.5 3.3 0.00018 21.5 3.3 2.4 2 1 0 2 2 2 1 FlxA-like protein Apolipoprotein PF01442.18 gi|55379487|ref|YP_137337.1| - 0.00044 20.2 14.6 0.00044 20.2 14.6 2.3 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain CdvA PF18822.1 gi|55379487|ref|YP_137337.1| - 0.00063 19.6 9.8 0.089 12.6 0.1 2.8 2 1 1 3 3 3 2 CdvA-like coiled-coil domain NPV_P10 PF05531.12 gi|55379487|ref|YP_137337.1| - 0.002 18.5 13.0 0.011 16.2 5.5 3.4 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Phage_GP20 PF06810.11 gi|55379487|ref|YP_137337.1| - 0.0036 17.1 6.3 0.0036 17.1 6.3 2.4 1 1 1 2 2 2 1 Phage minor structural protein GP20 Spc7 PF08317.11 gi|55379487|ref|YP_137337.1| - 0.0047 15.9 11.7 0.0047 15.9 11.7 2.0 1 1 1 2 2 2 1 Spc7 kinetochore protein ApoLp-III PF07464.11 gi|55379487|ref|YP_137337.1| - 0.0062 16.6 10.6 0.0062 16.6 10.6 2.5 1 1 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) Erp_C PF06780.11 gi|55379487|ref|YP_137337.1| - 0.0066 16.5 4.2 0.014 15.4 4.0 1.6 1 1 0 1 1 1 1 Erp protein C-terminus Baculo_PEP_C PF04513.12 gi|55379487|ref|YP_137337.1| - 0.013 15.6 8.7 1.5 8.9 0.8 2.9 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cauli_AT PF03233.13 gi|55379487|ref|YP_137337.1| - 0.02 14.8 1.3 0.02 14.8 1.3 1.8 1 1 1 2 2 2 0 Aphid transmission protein DUF148 PF02520.17 gi|55379487|ref|YP_137337.1| - 0.024 14.7 16.1 0.058 13.5 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function DUF148 DASH_Duo1 PF08651.10 gi|55379487|ref|YP_137337.1| - 0.024 14.4 4.2 1.8 8.4 0.3 3.6 3 1 1 4 4 4 0 DASH complex subunit Duo1 P35 PF02331.15 gi|55379487|ref|YP_137337.1| - 0.03 13.7 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Apoptosis preventing protein YtxH PF12732.7 gi|55379487|ref|YP_137337.1| - 0.03 14.8 11.9 6.7 7.3 0.1 3.5 1 1 1 2 2 2 0 YtxH-like protein Prominin PF05478.11 gi|55379487|ref|YP_137337.1| - 0.034 12.1 9.1 0.062 11.3 9.1 1.4 1 1 0 1 1 1 0 Prominin pP_pnuc_1 PF18165.1 gi|55379487|ref|YP_137337.1| - 0.034 14.0 2.3 0.057 13.3 1.0 2.0 1 1 1 2 2 2 0 Predicted pPIWI-associating nuclease DUF3584 PF12128.8 gi|55379487|ref|YP_137337.1| - 0.037 11.6 14.9 0.053 11.1 14.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF883 PF05957.13 gi|55379487|ref|YP_137337.1| - 0.1 13.2 10.4 0.63 10.7 6.1 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF1664 PF07889.12 gi|55379487|ref|YP_137337.1| - 0.1 12.6 14.2 3.4 7.7 8.6 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) WXG100 PF06013.12 gi|55379487|ref|YP_137337.1| - 0.12 12.6 15.4 0.8 10.0 1.8 4.3 1 1 3 4 4 4 0 Proteins of 100 residues with WXG DUF885 PF05960.11 gi|55379487|ref|YP_137337.1| - 0.15 11.7 10.5 0.21 11.2 10.5 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) ISG65-75 PF11727.8 gi|55379487|ref|YP_137337.1| - 0.18 11.0 7.7 0.18 11.0 7.1 1.4 1 1 0 1 1 1 0 Invariant surface glycoprotein ApoO PF09769.9 gi|55379487|ref|YP_137337.1| - 0.25 11.3 6.8 4.8 7.1 0.5 3.2 1 1 1 2 2 2 0 Apolipoprotein O Sec8_exocyst PF04048.14 gi|55379487|ref|YP_137337.1| - 0.26 11.2 7.7 0.058 13.3 1.6 2.5 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain Mod_r PF07200.13 gi|55379487|ref|YP_137337.1| - 0.27 11.3 15.2 0.052 13.7 6.5 2.6 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein UPF0242 PF06785.11 gi|55379487|ref|YP_137337.1| - 0.33 11.0 19.8 2.6 8.1 19.8 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Nmad5 PF18757.1 gi|55379487|ref|YP_137337.1| - 0.35 11.0 6.8 0.3 11.2 5.7 1.5 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 Cytochrom_C_2 PF01322.20 gi|55379487|ref|YP_137337.1| - 0.41 11.6 9.2 0.19 12.7 4.8 2.3 2 1 0 2 2 2 0 Cytochrome C' TMEM173 PF15009.6 gi|55379487|ref|YP_137337.1| - 0.48 9.5 3.6 7.2 5.7 0.2 2.1 2 0 0 2 2 2 0 Transmembrane protein 173 RmuC PF02646.16 gi|55379487|ref|YP_137337.1| - 0.63 9.1 13.9 0.69 9.0 5.7 2.8 1 1 1 3 3 3 0 RmuC family Exonuc_VII_L PF02601.15 gi|55379487|ref|YP_137337.1| - 0.8 9.2 8.3 2 7.9 8.3 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit Fib_alpha PF08702.10 gi|55379487|ref|YP_137337.1| - 0.81 9.9 12.2 1.9 8.7 5.6 2.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF948 PF06103.11 gi|55379487|ref|YP_137337.1| - 0.81 10.0 12.9 36 4.7 9.3 3.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) T2SSF PF00482.23 gi|55379487|ref|YP_137337.1| - 0.86 9.6 4.4 2.8 7.9 3.8 2.1 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F Tweety PF04906.13 gi|55379487|ref|YP_137337.1| - 0.91 8.1 6.5 2 7.0 0.8 2.4 1 1 2 3 3 3 0 Tweety Acetyltransf_14 PF03421.16 gi|55379487|ref|YP_137337.1| - 0.95 9.5 7.9 1.6 8.8 2.1 2.0 1 1 1 2 2 2 0 YopJ Serine/Threonine acetyltransferase Muted PF14942.6 gi|55379487|ref|YP_137337.1| - 1.1 9.6 16.8 3.8 7.9 3.1 2.1 1 1 0 2 2 2 0 Organelle biogenesis, Muted-like protein FlaC_arch PF05377.11 gi|55379487|ref|YP_137337.1| - 1.1 9.7 18.0 2.1 8.8 4.5 4.2 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) Allexi_40kDa PF05549.11 gi|55379487|ref|YP_137337.1| - 1.1 8.7 5.5 1.7 8.1 0.3 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein ANAPC4 PF12896.7 gi|55379487|ref|YP_137337.1| - 1.1 8.7 5.1 5.7 6.4 0.3 2.9 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 DUF4618 PF15397.6 gi|55379487|ref|YP_137337.1| - 1.3 8.4 16.0 0.16 11.3 7.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF2452 PF10504.9 gi|55379487|ref|YP_137337.1| - 1.3 8.4 8.1 0.67 9.4 5.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2452) Syntaxin-6_N PF09177.11 gi|55379487|ref|YP_137337.1| - 1.6 9.4 11.3 53 4.4 9.0 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Mce4_CUP1 PF11887.8 gi|55379487|ref|YP_137337.1| - 1.8 7.9 5.7 8.2 5.8 0.1 2.8 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Spectrin PF00435.21 gi|55379487|ref|YP_137337.1| - 2.1 8.8 14.1 1.4 9.5 9.2 2.6 1 1 1 2 2 2 0 Spectrin repeat AAA_32 PF13654.6 gi|55379487|ref|YP_137337.1| - 2.1 7.0 17.6 3.8 6.2 4.4 2.0 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|55379487|ref|YP_137337.1| - 2.2 8.7 10.7 3.6 8.0 10.7 1.3 1 1 0 1 1 1 0 AAA domain UPF0184 PF03670.13 gi|55379487|ref|YP_137337.1| - 2.9 8.3 8.7 12 6.4 5.7 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) FUSC PF04632.12 gi|55379487|ref|YP_137337.1| - 3 6.3 7.4 4.2 5.8 7.4 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Laminin_II PF06009.12 gi|55379487|ref|YP_137337.1| - 3 7.8 12.6 0.74 9.8 1.6 2.9 1 1 1 3 3 3 0 Laminin Domain II Cor1 PF04803.12 gi|55379487|ref|YP_137337.1| - 3.9 7.7 15.6 0.26 11.5 7.3 2.3 1 1 0 2 2 2 0 Cor1/Xlr/Xmr conserved region SKA2 PF16740.5 gi|55379487|ref|YP_137337.1| - 4 7.3 15.3 0.79 9.5 4.9 3.3 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 2 DUF16 PF01519.16 gi|55379487|ref|YP_137337.1| - 4.4 7.8 19.2 8.9 6.9 9.2 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 TPR_MLP1_2 PF07926.12 gi|55379487|ref|YP_137337.1| - 6 6.9 21.5 0.31 11.1 11.7 2.6 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Sas10_Utp3 PF04000.15 gi|55379487|ref|YP_137337.1| - 6.2 7.5 8.2 8.3 7.1 0.6 3.3 2 1 1 3 3 3 0 Sas10/Utp3/C1D family DUF2524 PF10732.9 gi|55379487|ref|YP_137337.1| - 6.5 7.1 17.1 0.33 11.3 9.3 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2524) Snapin_Pallidin PF14712.6 gi|55379487|ref|YP_137337.1| - 6.8 7.2 12.1 23 5.5 1.1 3.2 1 1 2 3 3 3 0 Snapin/Pallidin CHDCT2 PF08074.11 gi|55379487|ref|YP_137337.1| - 6.9 6.8 9.2 13 5.9 1.6 2.1 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain SurA_N_3 PF13624.6 gi|55379487|ref|YP_137337.1| - 7.2 6.4 13.0 0.48 10.2 2.7 2.3 2 1 0 2 2 2 0 SurA N-terminal domain MtrG PF04210.13 gi|55379487|ref|YP_137337.1| - 7.4 6.5 7.2 1.2 9.1 2.3 2.3 2 1 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G TMPIT PF07851.13 gi|55379487|ref|YP_137337.1| - 7.7 5.7 11.9 0.71 9.1 4.3 2.0 1 1 1 2 2 2 0 TMPIT-like protein PHA_synth_III_E PF09712.10 gi|55379488|ref|YP_137338.1| - 3.8e-15 55.8 12.2 1.1e-13 51.0 1.5 2.0 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.11 gi|55379488|ref|YP_137338.1| - 2.8e-06 27.3 6.7 3e-06 27.2 0.5 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin_2 PF09361.10 gi|55379488|ref|YP_137338.1| - 0.0022 18.2 11.7 0.33 11.2 1.0 3.2 2 1 0 2 2 2 2 Phasin protein FliD_C PF07195.12 gi|55379488|ref|YP_137338.1| - 0.0053 16.2 1.4 0.033 13.6 1.4 2.0 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus TPALS PF18178.1 gi|55379488|ref|YP_137338.1| - 0.041 13.3 0.8 0.12 11.8 0.0 1.9 2 0 0 2 2 2 0 TIR- and PNP-associating SLOG family Snapin_Pallidin PF14712.6 gi|55379488|ref|YP_137338.1| - 0.07 13.6 5.2 4.5 7.8 0.7 3.3 2 2 1 3 3 3 0 Snapin/Pallidin DUF29 PF01724.16 gi|55379488|ref|YP_137338.1| - 0.12 12.5 7.6 1.6 9.0 0.4 2.5 2 1 0 2 2 2 0 Domain of unknown function DUF29 Uds1 PF15456.6 gi|55379488|ref|YP_137338.1| - 0.24 11.6 4.7 0.19 11.9 2.4 2.0 1 1 1 2 2 2 0 Up-regulated During Septation Lant_dehydr_C PF14028.6 gi|55379488|ref|YP_137338.1| - 0.31 10.5 7.2 0.24 10.9 2.4 2.0 1 1 1 2 2 2 0 Lantibiotic biosynthesis dehydratase C-term Tape_meas_lam_C PF09718.10 gi|55379488|ref|YP_137338.1| - 0.44 10.7 14.6 1.6 9.0 1.5 3.1 3 0 0 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) ISG65-75 PF11727.8 gi|55379488|ref|YP_137338.1| - 0.49 9.6 4.3 0.43 9.8 0.7 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein BMFP PF04380.13 gi|55379488|ref|YP_137338.1| - 0.54 10.8 10.6 0.15 12.6 2.9 2.7 3 0 0 3 3 3 0 Membrane fusogenic activity RNase_J_C PF17770.1 gi|55379488|ref|YP_137338.1| - 0.64 11.1 2.5 24 6.1 0.3 3.0 3 1 0 3 3 3 0 Ribonuclease J C-terminal domain DUF883 PF05957.13 gi|55379488|ref|YP_137338.1| - 1.6 9.4 8.9 17 6.1 1.3 2.9 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF948 PF06103.11 gi|55379488|ref|YP_137338.1| - 1.8 8.9 6.4 10 6.5 0.7 3.1 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) TolA_bind_tri PF16331.5 gi|55379488|ref|YP_137338.1| - 4 7.6 12.6 0.71 10.0 8.2 2.1 2 1 0 2 2 2 0 TolA binding protein trimerisation ZapB PF06005.12 gi|55379488|ref|YP_137338.1| - 4.7 7.7 10.6 0.64 10.5 4.7 2.3 2 0 0 2 2 2 0 Cell division protein ZapB Abhydrolase_1 PF00561.20 gi|55379489|ref|YP_137339.1| - 6e-19 68.7 0.0 1.4e-18 67.5 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold HHH_5 PF14520.6 gi|55379489|ref|YP_137339.1| - 3.2e-11 43.7 0.0 6.7e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3141 PF11339.8 gi|55379489|ref|YP_137339.1| - 1.1e-09 37.3 0.0 1.1e-07 30.7 0.2 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) PhaC_N PF07167.13 gi|55379489|ref|YP_137339.1| - 1.3e-08 34.7 0.0 2.3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|55379489|ref|YP_137339.1| - 6.6e-08 32.1 0.0 0.0013 18.0 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|55379489|ref|YP_137339.1| - 5.9e-06 26.0 0.0 0.0038 16.8 0.0 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family PHB_depo_C PF06850.11 gi|55379489|ref|YP_137339.1| - 2e-05 24.1 0.0 3.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DNA_pol_lambd_f PF10391.9 gi|55379489|ref|YP_137339.1| - 0.00043 20.1 0.0 0.0016 18.2 0.0 2.0 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda FSH1 PF03959.13 gi|55379489|ref|YP_137339.1| - 0.00081 19.1 0.0 0.071 12.8 0.0 2.2 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DUF4332 PF14229.6 gi|55379489|ref|YP_137339.1| - 0.00094 19.4 0.0 0.0029 17.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|55379489|ref|YP_137339.1| - 0.0011 19.1 0.0 0.0033 17.6 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus Abhydrolase_5 PF12695.7 gi|55379489|ref|YP_137339.1| - 0.12 12.2 0.0 3.7 7.3 0.0 2.4 2 1 0 2 2 2 0 Alpha/beta hydrolase family TfoX_C PF04994.13 gi|55379489|ref|YP_137339.1| - 0.18 11.9 0.0 0.48 10.6 0.0 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain LDcluster4 PF18306.1 gi|55379490|ref|YP_137340.1| - 1.2e-36 125.7 4.7 1.3e-36 125.6 4.7 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|55379490|ref|YP_137340.1| - 3.8e-08 33.5 0.3 5.2e-08 33.0 0.3 1.3 1 1 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|55379490|ref|YP_137340.1| - 1.6e-05 24.3 2.3 0.00011 21.6 1.3 2.0 1 1 1 2 2 2 1 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.15 gi|55379490|ref|YP_137340.1| - 0.062 13.3 0.1 0.1 12.6 0.1 1.4 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Cpn60_TCP1 PF00118.24 gi|55379492|ref|YP_137342.1| - 5e-175 582.8 18.0 5.7e-175 582.6 18.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 gi|55379492|ref|YP_137342.1| - 0.055 13.8 0.4 0.37 11.2 0.1 2.5 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor CoA_binding_2 PF13380.6 gi|55379492|ref|YP_137342.1| - 0.16 12.5 0.7 1 9.9 0.0 2.4 2 0 0 2 2 2 0 CoA binding domain SCAB_CC PF16712.5 gi|55379492|ref|YP_137342.1| - 3.2 7.5 9.2 0.27 11.0 0.7 2.8 3 0 0 3 3 3 0 Coiled-coil regions of plant-specific actin-binding protein AAA_22 PF13401.6 gi|55379493|ref|YP_137343.1| - 4.1e-08 33.6 0.0 9.1e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379493|ref|YP_137343.1| - 0.0037 17.7 0.0 0.064 13.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|55379493|ref|YP_137343.1| - 0.0055 17.1 0.7 0.017 15.5 0.1 2.1 2 1 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|55379493|ref|YP_137343.1| - 0.16 11.9 0.0 1 9.3 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea WTF PF03303.13 gi|55379496|ref|YP_137346.1| - 0.33 10.6 2.3 0.22 11.2 0.7 1.6 2 0 0 2 2 2 0 WTF protein NAD_binding_10 PF13460.6 gi|55379497|ref|YP_137347.1| - 1.2e-18 67.7 0.1 1.9e-18 67.0 0.1 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|55379497|ref|YP_137347.1| - 3.5e-16 59.5 0.0 5.8e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|55379497|ref|YP_137347.1| - 1.9e-11 43.9 0.1 8.2e-11 41.8 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55379497|ref|YP_137347.1| - 5e-06 26.1 0.0 8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|55379497|ref|YP_137347.1| - 2.6e-05 23.4 0.0 4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|55379497|ref|YP_137347.1| - 0.00025 20.3 0.0 0.00043 19.5 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.17 gi|55379497|ref|YP_137347.1| - 0.0013 17.9 0.0 0.0094 15.1 0.0 2.0 2 0 0 2 2 2 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|55379498|ref|YP_137348.1| - 3.7e-67 227.1 0.0 4.6e-67 226.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|55379498|ref|YP_137348.1| - 2.5e-65 220.3 0.1 3.1e-65 220.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|55379498|ref|YP_137348.1| - 2.4e-29 102.2 0.0 3.1e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55379498|ref|YP_137348.1| - 3.5e-19 69.0 0.1 4.3e-19 68.7 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|55379498|ref|YP_137348.1| - 2.5e-18 66.2 0.0 1.3e-17 63.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|55379498|ref|YP_137348.1| - 3.6e-12 46.6 0.1 2.7e-11 43.7 0.1 2.0 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|55379498|ref|YP_137348.1| - 1.4e-08 34.2 0.0 5.1e-08 32.4 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|55379498|ref|YP_137348.1| - 2.3e-08 33.9 0.0 3.1e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|55379498|ref|YP_137348.1| - 3.4e-08 33.6 0.0 1.8e-07 31.3 0.0 1.9 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|55379498|ref|YP_137348.1| - 4.3e-06 26.3 1.3 6.8e-05 22.4 0.8 2.9 2 1 0 2 2 2 1 short chain dehydrogenase 3HCDH_N PF02737.18 gi|55379498|ref|YP_137348.1| - 0.0067 16.3 0.1 0.014 15.3 0.0 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|55379498|ref|YP_137348.1| - 0.0098 15.5 0.3 0.033 13.7 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short_C2 PF13561.6 gi|55379498|ref|YP_137348.1| - 0.019 14.5 0.0 0.04 13.5 0.0 1.6 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase F420_oxidored PF03807.17 gi|55379498|ref|YP_137348.1| - 0.055 14.1 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CSD PF00313.22 gi|55379499|ref|YP_137349.1| - 2.9e-19 68.7 0.3 3.2e-19 68.5 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|55379499|ref|YP_137349.1| - 0.02 14.8 0.3 0.029 14.3 0.2 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|55379499|ref|YP_137349.1| - 0.053 13.2 2.3 0.081 12.6 2.3 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|55379499|ref|YP_137349.1| - 0.067 13.1 0.0 0.079 12.8 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain Helicase_C_2 PF13307.6 gi|55379500|ref|YP_137350.1| - 1e-21 77.8 0.0 2.1e-21 76.8 0.0 1.5 2 0 0 2 2 2 1 Helicase C-terminal domain DXP_redisom_C PF08436.12 gi|55379500|ref|YP_137350.1| - 0.073 13.2 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Met_10 PF02475.16 gi|55379501|ref|YP_137351.1| - 1.3e-49 168.6 0.0 4.7e-28 98.3 0.0 2.3 2 0 0 2 2 2 2 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|55379501|ref|YP_137351.1| - 1.2e-05 25.9 0.0 3.4e-05 24.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|55379501|ref|YP_137351.1| - 3.5e-05 23.4 0.0 5.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|55379501|ref|YP_137351.1| - 0.00024 20.8 0.0 0.0004 20.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.6 gi|55379501|ref|YP_137351.1| - 0.00083 20.4 0.2 0.0049 17.9 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55379501|ref|YP_137351.1| - 0.0018 18.1 0.0 0.0072 16.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|55379501|ref|YP_137351.1| - 0.0033 17.0 0.0 0.013 15.1 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|55379501|ref|YP_137351.1| - 0.031 14.9 0.0 0.084 13.5 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379501|ref|YP_137351.1| - 0.035 13.9 0.0 0.11 12.3 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain SAM_MT PF04445.13 gi|55379501|ref|YP_137351.1| - 0.04 13.3 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase tRNA_U5-meth_tr PF05958.11 gi|55379501|ref|YP_137351.1| - 0.041 12.9 0.0 0.06 12.3 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|55379501|ref|YP_137351.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase RrnaAD PF00398.20 gi|55379501|ref|YP_137351.1| - 0.13 11.3 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TRM PF02005.16 gi|55379501|ref|YP_137351.1| - 0.15 11.2 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase NMD3 PF04981.13 gi|55379502|ref|YP_137352.1| - 2.3e-63 213.9 0.0 2.8e-63 213.6 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|55379502|ref|YP_137352.1| - 0.0012 19.1 1.3 0.12 12.6 0.0 3.0 2 1 1 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.6 gi|55379502|ref|YP_137352.1| - 0.057 12.8 4.6 10 5.7 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|55379502|ref|YP_137352.1| - 0.069 13.2 5.9 2.7 8.1 3.4 3.1 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55379502|ref|YP_137352.1| - 0.091 12.5 9.7 0.19 11.5 0.3 3.3 3 0 0 3 3 3 0 zinc-ribbon domain FYVE PF01363.21 gi|55379502|ref|YP_137352.1| - 0.11 12.7 3.6 1.5 9.0 0.7 2.5 3 0 0 3 3 3 0 FYVE zinc finger eIF-5_eIF-2B PF01873.17 gi|55379502|ref|YP_137352.1| - 0.26 11.2 2.5 0.3 11.0 0.5 2.0 2 0 0 2 2 2 0 Domain found in IF2B/IF5 GFA PF04828.14 gi|55379502|ref|YP_137352.1| - 0.27 11.6 3.5 36 4.8 0.0 3.4 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|55379502|ref|YP_137352.1| - 0.92 9.2 13.3 0.45 10.1 0.2 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|55379502|ref|YP_137352.1| - 7.9 6.2 12.1 3 7.6 0.3 2.9 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|55379502|ref|YP_137352.1| - 8.9 6.5 7.2 8.1 6.6 0.2 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Epimerase PF01370.21 gi|55379503|ref|YP_137353.1| - 6.6e-29 101.1 0.3 2.2e-27 96.1 0.3 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55379503|ref|YP_137353.1| - 1.6e-18 67.2 0.0 8.9e-17 61.5 0.0 2.4 1 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|55379503|ref|YP_137353.1| - 2.7e-13 49.7 0.1 7.1e-13 48.3 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|55379503|ref|YP_137353.1| - 4.7e-06 26.0 0.0 7.2e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|55379503|ref|YP_137353.1| - 7.5e-06 25.1 0.0 1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|55379503|ref|YP_137353.1| - 5.8e-05 22.4 0.0 0.00016 20.9 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|55379503|ref|YP_137353.1| - 0.018 14.5 0.0 0.19 11.2 0.0 2.3 2 1 0 2 2 2 0 short chain dehydrogenase DHQ_synthase PF01761.20 gi|55379503|ref|YP_137353.1| - 0.058 12.5 0.0 0.078 12.1 0.0 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase Peptidase_M48 PF01435.18 gi|55379504|ref|YP_137354.1| - 3.8e-43 147.6 0.0 6.2e-43 146.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|55379504|ref|YP_137354.1| - 1.5e-07 30.9 0.9 2.2e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|55379504|ref|YP_137354.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF1772 PF08592.11 gi|55379504|ref|YP_137354.1| - 0.67 10.3 4.4 0.24 11.7 0.3 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) DUF2207 PF09972.9 gi|55379504|ref|YP_137354.1| - 3 6.5 11.2 2.3 6.9 1.7 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Pox_E6 PF04656.12 gi|55379505|ref|YP_137355.1| - 0.037 12.5 0.0 0.048 12.1 0.0 1.1 1 0 0 1 1 1 0 Pox virus E6 protein Rad51 PF08423.11 gi|55379507|ref|YP_137357.1| - 3.2e-75 252.7 0.1 1.1e-73 247.7 0.1 2.0 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|55379507|ref|YP_137357.1| - 1.5e-11 44.7 0.1 1.2e-10 41.9 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.21 gi|55379507|ref|YP_137357.1| - 3.7e-08 33.2 0.2 0.0034 16.9 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|55379507|ref|YP_137357.1| - 2.3e-06 27.3 0.3 3.4e-06 26.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|55379507|ref|YP_137357.1| - 7.4e-06 25.6 1.6 0.0012 18.6 0.3 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|55379507|ref|YP_137357.1| - 0.00021 21.3 0.0 0.00059 19.9 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|55379507|ref|YP_137357.1| - 0.00071 19.8 0.0 0.0014 18.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus ATPase PF06745.13 gi|55379507|ref|YP_137357.1| - 0.0017 17.8 0.3 0.0027 17.1 0.3 1.6 1 1 0 1 1 1 1 KaiC IMS_HHH PF11798.8 gi|55379507|ref|YP_137357.1| - 0.0081 16.4 0.0 0.031 14.6 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif AAA_22 PF13401.6 gi|55379507|ref|YP_137357.1| - 0.012 15.9 0.1 0.03 14.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain DNA_pol_lambd_f PF10391.9 gi|55379507|ref|YP_137357.1| - 0.022 14.6 0.0 0.091 12.6 0.0 2.0 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|55379507|ref|YP_137357.1| - 0.033 14.5 0.0 3.3 8.0 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|55379507|ref|YP_137357.1| - 0.038 14.4 0.1 0.34 11.3 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain BAF PF02961.14 gi|55379507|ref|YP_137357.1| - 0.13 12.7 0.0 0.39 11.2 0.0 1.8 1 0 0 1 1 1 0 Barrier to autointegration factor Aldo_ket_red PF00248.21 gi|55379508|ref|YP_137358.1| - 9.4e-49 166.2 0.0 1.1e-48 166.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.21 gi|55379508|ref|YP_137358.1| - 0.21 11.6 3.4 0.4 10.7 0.1 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family CPBP PF02517.16 gi|55379509|ref|YP_137359.1| - 4.9e-12 46.0 6.7 4.9e-12 46.0 6.7 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease FeoB_C PF07664.12 gi|55379509|ref|YP_137359.1| - 0.61 9.8 4.7 2.5 7.8 0.1 3.6 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus Hexapep PF00132.24 gi|55379510|ref|YP_137360.1| - 3.3e-06 26.6 3.4 0.017 14.8 0.0 3.3 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55379510|ref|YP_137360.1| - 0.00043 20.0 0.3 0.068 12.9 0.0 2.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Nmad3 PF18754.1 gi|55379511|ref|YP_137361.1| - 3.9e-55 187.2 0.0 4.4e-55 187.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 ATPase PF06745.13 gi|55379512|ref|YP_137362.1| - 1.4e-42 145.6 0.1 1.6e-42 145.4 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|55379512|ref|YP_137362.1| - 8.3e-07 28.0 0.1 3.1e-06 26.1 0.1 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|55379512|ref|YP_137362.1| - 6.5e-06 25.9 0.0 1.7e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|55379512|ref|YP_137362.1| - 1.2e-05 24.7 0.0 3.9e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|55379512|ref|YP_137362.1| - 6.7e-05 22.8 0.0 0.00018 21.4 0.0 1.7 2 1 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.6 gi|55379512|ref|YP_137362.1| - 0.00022 21.6 0.0 0.00032 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|55379512|ref|YP_137362.1| - 0.00047 20.1 0.0 0.00074 19.5 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|55379512|ref|YP_137362.1| - 0.00068 19.4 0.0 0.0013 18.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|55379512|ref|YP_137362.1| - 0.00083 19.4 0.0 0.0022 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|55379512|ref|YP_137362.1| - 0.00098 19.4 0.2 0.0018 18.6 0.2 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|55379512|ref|YP_137362.1| - 0.0013 18.5 0.0 0.0018 18.1 0.0 1.4 1 1 0 1 1 1 1 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|55379512|ref|YP_137362.1| - 0.0018 18.1 0.1 0.0034 17.2 0.1 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|55379512|ref|YP_137362.1| - 0.0022 18.3 0.0 0.0032 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|55379512|ref|YP_137362.1| - 0.0029 17.1 0.1 0.0085 15.6 0.0 1.8 1 1 0 2 2 2 1 recA bacterial DNA recombination protein AAA_33 PF13671.6 gi|55379512|ref|YP_137362.1| - 0.0037 17.4 0.2 0.0085 16.3 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379512|ref|YP_137362.1| - 0.0052 17.2 0.5 0.042 14.3 0.5 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad51 PF08423.11 gi|55379512|ref|YP_137362.1| - 0.0056 16.0 0.0 0.0075 15.6 0.0 1.4 1 1 0 1 1 1 1 Rad51 AAA_30 PF13604.6 gi|55379512|ref|YP_137362.1| - 0.0067 16.2 0.0 0.0086 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|55379512|ref|YP_137362.1| - 0.0082 16.5 0.1 0.02 15.3 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|55379512|ref|YP_137362.1| - 0.018 14.7 0.1 0.069 12.7 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|55379512|ref|YP_137362.1| - 0.022 13.8 0.0 0.037 13.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|55379512|ref|YP_137362.1| - 0.025 15.0 0.1 0.061 13.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase NACHT PF05729.12 gi|55379512|ref|YP_137362.1| - 0.033 14.1 0.1 0.093 12.6 0.0 1.8 2 1 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|55379512|ref|YP_137362.1| - 0.033 13.4 0.0 0.038 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.6 gi|55379512|ref|YP_137362.1| - 0.034 14.7 0.2 0.054 14.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|55379512|ref|YP_137362.1| - 0.036 13.8 0.2 0.055 13.2 0.2 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase Viral_helicase1 PF01443.18 gi|55379512|ref|YP_137362.1| - 0.046 13.5 0.0 0.082 12.6 0.0 1.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|55379512|ref|YP_137362.1| - 0.055 13.4 0.2 0.082 12.8 0.2 1.4 1 1 0 1 1 1 0 NTPase AAA_11 PF13086.6 gi|55379512|ref|YP_137362.1| - 0.057 13.2 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|55379512|ref|YP_137362.1| - 0.067 12.3 0.1 0.56 9.3 0.0 1.9 1 1 1 2 2 2 0 PAXNEB protein AAA_17 PF13207.6 gi|55379512|ref|YP_137362.1| - 0.096 13.1 0.5 0.23 11.9 0.2 1.8 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.9 gi|55379512|ref|YP_137362.1| - 0.12 11.6 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PHP PF02811.19 gi|55379515|ref|YP_137365.1| - 2.4e-07 31.2 0.0 2.4e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|55379515|ref|YP_137365.1| - 0.0089 15.8 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 PHP-associated Cupin_2 PF07883.11 gi|55379517|ref|YP_137367.1| - 1.1e-15 57.1 1.0 1.6e-15 56.6 1.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|55379517|ref|YP_137367.1| - 2.5e-06 27.5 0.1 3.6e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|55379517|ref|YP_137367.1| - 0.0065 16.2 0.1 0.0069 16.1 0.1 1.3 1 0 0 1 1 1 1 AraC-binding-like domain DUF2072 PF09845.9 gi|55379517|ref|YP_137367.1| - 0.082 13.2 0.1 0.14 12.5 0.1 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein MannoseP_isomer PF01050.18 gi|55379517|ref|YP_137367.1| - 0.095 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Zn-ribbon_8 PF09723.10 gi|55379517|ref|YP_137367.1| - 0.096 12.8 2.0 0.28 11.3 2.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Cupin_3 PF05899.12 gi|55379517|ref|YP_137367.1| - 0.12 12.1 0.3 0.19 11.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) zf-NADH-PPase PF09297.11 gi|55379517|ref|YP_137367.1| - 5.6 6.7 7.6 7.4 6.3 0.9 3.4 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain GATase PF00117.28 gi|55379518|ref|YP_137368.1| - 1.8e-21 76.8 0.0 2.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|55379518|ref|YP_137368.1| - 4.1e-07 30.0 0.1 4e-06 26.7 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 Biotin_carb_C PF02785.19 gi|55379518|ref|YP_137368.1| - 0.074 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Biotin carboxylase C-terminal domain ATP_synt_H PF05493.13 gi|55379519|ref|YP_137369.1| - 0.034 14.6 7.5 0.042 14.3 7.5 1.2 1 0 0 1 1 1 0 ATP synthase subunit H Aldo_ket_red PF00248.21 gi|55379520|ref|YP_137370.1| - 3.6e-55 187.2 0.0 4.9e-53 180.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 gi|55379521|ref|YP_137371.1| - 2.4e-18 67.1 0.0 4e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|55379521|ref|YP_137371.1| - 0.032 14.8 0.1 0.056 14.0 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent IFT57 PF10498.9 gi|55379522|ref|YP_137372.1| - 0.059 12.3 0.1 0.11 11.5 0.1 1.4 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DZR PF12773.7 gi|55379523|ref|YP_137373.1| - 7.4e-05 22.7 3.2 0.0001 22.3 3.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55379523|ref|YP_137373.1| - 0.00016 21.3 2.3 0.00023 20.7 2.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|55379523|ref|YP_137373.1| - 0.0015 17.8 0.9 0.0021 17.3 0.9 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_15 PF17032.5 gi|55379523|ref|YP_137373.1| - 0.0033 18.1 0.5 0.0039 17.9 0.5 1.1 1 0 0 1 1 1 1 zinc-ribbon family OrfB_Zn_ribbon PF07282.11 gi|55379523|ref|YP_137373.1| - 0.014 15.3 1.7 0.021 14.7 1.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain SoxD PF04267.12 gi|55379523|ref|YP_137373.1| - 0.065 13.3 0.1 0.096 12.8 0.1 1.3 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family NucS PF01939.16 gi|161723232|ref|YP_137375.2| - 7.8e-67 225.0 0.0 8.9e-67 224.8 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|161723232|ref|YP_137375.2| - 0.026 14.4 0.0 0.043 13.6 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain BAT PF15915.5 gi|55379527|ref|YP_137377.1| - 1.6e-30 106.0 3.0 2.4e-30 105.5 3.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|55379527|ref|YP_137377.1| - 1.1e-21 76.4 0.1 1.7e-21 75.8 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.7 gi|55379527|ref|YP_137377.1| - 0.00085 19.3 0.1 0.002 18.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55379527|ref|YP_137377.1| - 0.0061 16.4 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|55379527|ref|YP_137377.1| - 0.009 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|55379527|ref|YP_137377.1| - 0.022 14.3 0.0 0.33 10.5 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|55379527|ref|YP_137377.1| - 0.023 14.2 0.0 0.056 13.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|55379527|ref|YP_137377.1| - 0.041 13.8 0.2 0.13 12.2 0.0 1.9 2 1 1 3 3 3 0 MarR family HTH_11 PF08279.12 gi|55379527|ref|YP_137377.1| - 0.068 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 gi|55379527|ref|YP_137377.1| - 0.11 12.1 0.0 0.62 9.8 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 MutS_V PF00488.21 gi|55379528|ref|YP_137378.1| - 1.1e-78 263.6 0.1 1.8e-78 262.9 0.1 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|55379528|ref|YP_137378.1| - 2.8e-37 127.4 0.0 7.8e-37 126.0 0.0 1.7 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.18 gi|55379528|ref|YP_137378.1| - 4.5e-35 121.6 3.7 9.5e-35 120.6 3.7 1.6 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|55379528|ref|YP_137378.1| - 8.5e-31 106.2 0.5 1.8e-30 105.1 0.5 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|55379528|ref|YP_137378.1| - 7.6e-12 45.7 0.0 2.9e-11 43.8 0.0 2.0 1 0 0 1 1 1 1 MutS domain II Cpn60_TCP1 PF00118.24 gi|55379530|ref|YP_137380.1| - 6.4e-163 542.9 15.0 7.2e-163 542.7 15.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 gi|55379530|ref|YP_137380.1| - 0.57 10.5 4.5 0.86 10.0 0.0 3.3 4 1 1 5 5 5 0 Dinitrogenase iron-molybdenum cofactor OCD_Mu_crystall PF02423.15 gi|55379532|ref|YP_137382.1| - 7.6e-89 297.8 2.1 8.5e-89 297.6 2.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|55379532|ref|YP_137382.1| - 0.0018 18.4 0.0 0.0031 17.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase zf-ribbon_3 PF13248.6 gi|55379534|ref|YP_137384.1| - 4.1e-05 22.8 1.5 0.07 12.6 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-HYPF PF07503.12 gi|55379534|ref|YP_137384.1| - 0.00043 20.0 2.6 0.044 13.6 0.7 2.2 2 0 0 2 2 2 2 HypF finger zinc_ribbon_13 PF09855.9 gi|55379534|ref|YP_137384.1| - 0.005 17.0 0.1 0.0072 16.5 0.1 1.3 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Prok-RING_1 PF14446.6 gi|55379534|ref|YP_137384.1| - 0.017 15.1 1.0 2.1 8.4 0.3 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.6 gi|55379534|ref|YP_137384.1| - 0.026 14.4 0.3 4.8 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|55379534|ref|YP_137384.1| - 0.03 14.4 1.1 0.066 13.2 1.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|55379534|ref|YP_137384.1| - 0.036 13.8 1.1 4.9 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|55379534|ref|YP_137384.1| - 0.037 14.2 0.7 3.9 7.7 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|55379534|ref|YP_137384.1| - 0.039 13.5 0.4 5.1 6.7 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.6 gi|55379534|ref|YP_137384.1| - 0.045 14.1 2.7 2.7 8.4 2.7 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|55379534|ref|YP_137384.1| - 0.05 13.2 0.8 3.3 7.4 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S27e PF01667.17 gi|55379534|ref|YP_137384.1| - 0.072 12.8 0.3 9.3 6.0 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 Terminase_GpA PF05876.12 gi|55379534|ref|YP_137384.1| - 0.092 11.3 0.0 0.095 11.2 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) CpXC PF14353.6 gi|55379534|ref|YP_137384.1| - 0.12 12.4 0.9 0.4 10.7 0.9 1.7 1 1 0 1 1 1 0 CpXC protein zf-C4_Topoisom PF01396.19 gi|55379534|ref|YP_137384.1| - 0.13 12.0 2.0 2.1 8.2 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Ogr_Delta PF04606.12 gi|55379534|ref|YP_137384.1| - 0.15 12.0 3.4 1.2 9.1 1.3 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF3624 PF12292.8 gi|55379535|ref|YP_137385.1| - 0.16 12.4 1.6 0.29 11.6 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) PAS_4 PF08448.10 gi|55379536|ref|YP_137386.1| - 4.2e-08 33.4 1.3 1.3e-07 31.8 0.5 2.3 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|55379536|ref|YP_137386.1| - 8.1e-07 29.5 0.0 1.5e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|55379536|ref|YP_137386.1| - 0.044 13.8 1.5 0.12 12.4 0.1 2.4 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|55379536|ref|YP_137386.1| - 0.1 12.6 0.0 0.3 11.0 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain tRNA-synt_1 PF00133.22 gi|55379537|ref|YP_137387.1| - 2.3e-72 244.2 8.2 4.1e-27 94.7 0.2 4.8 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|55379537|ref|YP_137387.1| - 3e-60 202.9 0.0 5.5e-60 202.0 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|55379537|ref|YP_137387.1| - 2.6e-35 121.9 0.0 1.4e-23 83.3 0.0 4.3 3 1 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|55379537|ref|YP_137387.1| - 8.1e-16 58.3 0.1 1.6e-15 57.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|55379537|ref|YP_137387.1| - 0.00032 20.1 0.0 0.044 13.1 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|55379537|ref|YP_137387.1| - 0.0035 16.3 0.0 0.78 8.6 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) zf-ribbon_3 PF13248.6 gi|55379537|ref|YP_137387.1| - 0.046 13.1 5.6 19 4.8 0.1 4.2 4 0 0 4 4 4 0 zinc-ribbon domain DZR PF12773.7 gi|55379537|ref|YP_137387.1| - 0.053 13.5 5.0 1.1 9.3 0.5 3.0 2 1 1 3 3 3 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|55379537|ref|YP_137387.1| - 0.59 10.2 8.8 0.68 10.0 0.0 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|55379537|ref|YP_137387.1| - 1.1 8.8 7.6 12 5.6 0.2 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|55379537|ref|YP_137387.1| - 4.5 7.5 6.0 1.3 9.2 0.2 2.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) AhpC-TSA PF00578.21 gi|55379538|ref|YP_137388.1| - 3.4e-28 98.1 0.0 3.9e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55379538|ref|YP_137388.1| - 1.2e-15 57.5 0.0 1.3e-15 57.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|55379538|ref|YP_137388.1| - 0.00045 20.3 0.0 0.00058 20.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|55379538|ref|YP_137388.1| - 0.077 12.5 0.0 0.093 12.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) HSP20 PF00011.21 gi|55379539|ref|YP_137389.1| - 1.2e-17 63.9 0.1 1.4e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|55379539|ref|YP_137389.1| - 9.6e-10 37.9 0.0 1.4e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|55379539|ref|YP_137389.1| - 0.015 15.4 0.4 0.015 15.4 0.4 1.9 1 1 1 2 2 2 0 GvpH PDT PF00800.18 gi|55379540|ref|YP_137390.1| - 1.2e-49 168.6 0.4 1.5e-49 168.3 0.4 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|55379540|ref|YP_137390.1| - 4.7e-07 29.5 0.0 2e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 ACT domain Aldo_ket_red PF00248.21 gi|55379541|ref|YP_137391.1| - 3e-69 233.4 0.0 3.4e-54 184.0 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family Pyr_redox_2 PF07992.14 gi|55379543|ref|YP_137393.1| - 1.2e-65 221.6 4.0 1.9e-65 221.0 4.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|55379543|ref|YP_137393.1| - 2.8e-36 124.1 2.4 3.6e-36 123.8 0.5 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|55379543|ref|YP_137393.1| - 5.2e-22 78.2 3.3 5.9e-19 68.4 0.3 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55379543|ref|YP_137393.1| - 2.5e-11 43.4 0.5 2.9e-07 30.0 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|55379543|ref|YP_137393.1| - 3.5e-10 39.5 2.9 9e-08 31.6 0.5 2.7 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|55379543|ref|YP_137393.1| - 7.7e-06 25.5 0.5 7.7e-06 25.5 0.5 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|55379543|ref|YP_137393.1| - 2.7e-05 23.4 8.8 0.00036 19.8 0.6 3.7 4 0 0 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.6 gi|55379543|ref|YP_137393.1| - 3.3e-05 24.0 3.0 0.045 14.0 0.7 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|55379543|ref|YP_137393.1| - 7.6e-05 22.1 9.6 0.066 12.5 1.0 3.3 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|55379543|ref|YP_137393.1| - 0.00013 20.8 4.8 0.048 12.4 0.2 3.5 4 0 0 4 4 4 2 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 gi|55379543|ref|YP_137393.1| - 0.00019 21.1 0.7 0.00047 19.8 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|55379543|ref|YP_137393.1| - 0.00074 19.4 1.1 0.0016 18.3 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|55379543|ref|YP_137393.1| - 0.0019 17.5 4.1 0.12 11.7 0.1 2.9 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|55379543|ref|YP_137393.1| - 0.0037 17.7 0.3 0.18 12.2 0.0 2.8 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|55379543|ref|YP_137393.1| - 0.0067 16.9 1.0 0.22 12.0 0.3 3.0 2 1 0 2 2 2 1 XdhC Rossmann domain TetR_C_20 PF17925.1 gi|55379543|ref|YP_137393.1| - 0.04 14.2 4.3 0.92 9.9 0.1 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ThiF PF00899.21 gi|55379543|ref|YP_137393.1| - 0.12 11.8 0.1 0.36 10.1 0.0 1.8 2 0 0 2 2 2 0 ThiF family AIRS PF00586.24 gi|55379543|ref|YP_137393.1| - 9.3 7.0 7.5 1.1 10.0 0.1 3.2 3 2 0 3 3 3 0 AIR synthase related protein, N-terminal domain MatC_N PF07158.11 gi|55379544|ref|YP_137394.1| - 7.3 6.6 11.1 1.8e+02 2.1 10.6 2.5 1 1 0 1 1 1 0 Dicarboxylate carrier protein MatC N-terminus 2-oxoacid_dh PF00198.23 gi|55379545|ref|YP_137395.1| - 7e-83 277.6 0.0 9.8e-83 277.2 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|55379545|ref|YP_137395.1| - 3.7e-24 84.4 0.8 9.3e-24 83.1 0.8 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|55379545|ref|YP_137395.1| - 1.8e-23 82.6 2.0 7.2e-18 64.6 0.7 2.9 2 0 0 2 2 2 2 e3 binding domain HlyD_3 PF13437.6 gi|55379545|ref|YP_137395.1| - 3.2e-07 31.0 2.4 3.9e-05 24.3 0.3 3.0 1 1 1 2 2 2 1 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 gi|55379545|ref|YP_137395.1| - 2e-06 27.5 5.1 0.0017 18.2 0.2 3.3 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|55379545|ref|YP_137395.1| - 9.4e-05 21.7 0.2 0.00037 19.8 0.2 1.9 1 1 0 1 1 1 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|55379545|ref|YP_137395.1| - 0.00049 20.0 0.3 0.0011 18.8 0.3 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|55379545|ref|YP_137395.1| - 0.035 14.0 0.3 0.092 12.7 0.3 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain PYNP_C PF07831.13 gi|55379545|ref|YP_137395.1| - 0.043 13.5 0.2 0.97 9.1 0.0 2.7 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain NQRA PF05896.11 gi|55379545|ref|YP_137395.1| - 0.065 12.7 0.2 0.15 11.4 0.2 1.6 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CAT PF00302.18 gi|55379545|ref|YP_137395.1| - 0.12 12.3 0.0 0.35 10.8 0.0 1.6 2 0 0 2 2 2 0 Chloramphenicol acetyltransferase Transket_pyr PF02779.24 gi|55379546|ref|YP_137396.1| - 2.1e-50 170.9 0.0 2.9e-50 170.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|55379546|ref|YP_137396.1| - 4.7e-39 133.1 0.1 7.8e-39 132.4 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|55379546|ref|YP_137396.1| - 0.00053 20.2 0.0 0.0013 19.0 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|55379547|ref|YP_137397.1| - 1.4e-83 280.3 0.0 1.7e-83 280.0 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|55379547|ref|YP_137397.1| - 1.9e-05 24.0 0.0 2.6e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|55379547|ref|YP_137397.1| - 0.0032 16.5 0.0 0.0078 15.2 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|55379547|ref|YP_137397.1| - 0.023 14.4 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|55379548|ref|YP_137398.1| - 1.8e-11 44.7 0.1 9e-11 42.4 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|55379548|ref|YP_137398.1| - 3.2e-10 40.4 0.1 6e-10 39.5 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|55379548|ref|YP_137398.1| - 0.012 15.7 0.2 2 8.5 0.0 2.8 1 1 2 3 3 3 0 B12 binding domain DEAD PF00270.29 gi|55379550|ref|YP_137400.1| - 2.8e-24 85.9 0.0 5.6e-24 84.8 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|55379550|ref|YP_137400.1| - 2.5e-14 53.1 0.0 4.8e-14 52.2 0.0 1.4 1 1 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|55379550|ref|YP_137400.1| - 9.6e-12 45.2 0.0 1.5e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|55379550|ref|YP_137400.1| - 5.7e-07 29.9 0.0 4e-06 27.1 0.0 2.3 1 1 0 1 1 1 1 Helicase conserved C-terminal domain T2SSE PF00437.20 gi|55379550|ref|YP_137400.1| - 0.1 11.6 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein HAD_2 PF13419.6 gi|55379551|ref|YP_137401.1| - 2e-23 83.4 0.0 2.4e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55379551|ref|YP_137401.1| - 7.5e-16 59.0 0.1 4.8e-14 53.1 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55379551|ref|YP_137401.1| - 1.2e-07 31.6 0.2 4.1e-07 30.0 0.2 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|55379551|ref|YP_137401.1| - 5.4e-05 23.7 0.4 6.7e-05 23.4 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|55379551|ref|YP_137401.1| - 0.0057 16.7 0.0 0.047 13.8 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55379551|ref|YP_137401.1| - 0.01 15.6 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase zf-C4_Topoisom PF01396.19 gi|55379552|ref|YP_137402.1| - 5.2e-07 29.3 8.9 1.1e-05 25.1 0.2 3.2 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger NucS PF01939.16 gi|55379552|ref|YP_137402.1| - 5.4e-07 29.2 0.0 7.5e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS zinc-ribbons_6 PF07191.12 gi|55379552|ref|YP_137402.1| - 0.0008 19.3 2.1 0.13 12.2 0.4 2.5 1 1 1 2 2 2 2 zinc-ribbons zf-TFIIB PF13453.6 gi|55379552|ref|YP_137402.1| - 0.013 14.8 9.6 0.13 11.7 0.1 3.6 3 1 2 5 5 5 0 Transcription factor zinc-finger HypA PF01155.19 gi|55379552|ref|YP_137402.1| - 0.016 15.3 2.6 0.12 12.4 0.8 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1272 PF06906.11 gi|55379552|ref|YP_137402.1| - 0.021 14.9 3.5 3.3 7.9 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) Auto_anti-p27 PF06677.12 gi|55379552|ref|YP_137402.1| - 0.086 13.0 17.8 0.9 9.7 1.9 4.4 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf_Rg PF17915.1 gi|55379552|ref|YP_137402.1| - 0.17 11.3 0.1 0.17 11.3 0.1 3.0 3 0 0 3 3 3 0 Reverse gyrase zinc finger zinc_ribbon_4 PF13717.6 gi|55379552|ref|YP_137402.1| - 0.35 10.8 0.1 0.35 10.8 0.1 3.5 5 0 0 5 5 5 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|55379552|ref|YP_137402.1| - 4.2 7.0 12.2 8 6.1 2.2 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|55379552|ref|YP_137402.1| - 6.4 6.8 13.2 18 5.3 0.8 5.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) tRNA_int_endo PF01974.17 gi|55379553|ref|YP_137403.1| - 5.1e-32 109.8 0.4 1.1e-24 86.2 0.0 3.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|55379553|ref|YP_137403.1| - 9.6e-28 95.7 0.3 1.4e-12 47.1 0.1 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.25 gi|55379554|ref|YP_137404.1| - 1.9e-43 148.9 0.0 9.4e-26 90.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|55379555|ref|YP_137405.1| - 4.8e-77 258.8 0.0 5.9e-77 258.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|55379555|ref|YP_137405.1| - 0.00032 19.9 0.4 0.15 11.1 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|55379555|ref|YP_137405.1| - 0.071 13.0 3.2 0.16 11.9 0.5 2.7 3 0 0 3 3 3 0 MarR family tRNA_synthFbeta PF17759.1 gi|55379555|ref|YP_137405.1| - 0.086 12.3 0.0 7.5 5.9 0.0 2.3 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain MarR PF01047.22 gi|55379555|ref|YP_137405.1| - 0.17 11.9 0.1 4.9 7.1 0.0 2.9 3 0 0 3 3 3 0 MarR family tRNA_synthFbeta PF17759.1 gi|55379556|ref|YP_137406.1| - 3e-39 134.7 0.0 4.8e-39 134.0 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|55379556|ref|YP_137406.1| - 3.1e-13 49.8 0.3 1.8e-12 47.3 0.3 2.2 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|55379556|ref|YP_137406.1| - 1.3e-11 44.5 0.0 2.2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|55379556|ref|YP_137406.1| - 4.6e-06 26.8 0.1 0.00048 20.3 0.0 2.8 2 0 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|55379556|ref|YP_137406.1| - 0.00024 20.6 0.0 0.00037 20.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) RDD PF06271.12 gi|55379557|ref|YP_137407.1| - 4.2e-14 52.9 2.3 5.1e-14 52.7 2.3 1.1 1 0 0 1 1 1 1 RDD family DHO_dh PF01180.21 gi|55379558|ref|YP_137408.1| - 8.9e-82 274.6 0.0 1e-81 274.4 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|55379558|ref|YP_137408.1| - 0.00011 21.7 0.2 0.00018 21.0 0.2 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase NQRA_SLBB PF11973.8 gi|55379558|ref|YP_137408.1| - 0.039 14.6 0.6 2.3 8.9 0.3 2.3 2 0 0 2 2 2 0 NQRA C-terminal domain His_biosynth PF00977.21 gi|55379558|ref|YP_137408.1| - 0.087 12.3 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Histidine biosynthesis protein PucR PF07905.11 gi|55379558|ref|YP_137408.1| - 0.14 12.4 0.0 0.4 11.0 0.0 1.8 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family MazE_antitoxin PF04014.18 gi|55379559|ref|YP_137409.1| - 0.014 15.4 0.2 0.02 14.8 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|55379559|ref|YP_137409.1| - 0.026 14.6 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system MC1 PF05854.11 gi|55379560|ref|YP_137410.1| - 2.1e-45 152.9 0.2 2.6e-45 152.6 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 Arm-DNA-bind_3 PF13356.6 gi|55379561|ref|YP_137411.1| - 0.11 12.9 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Arm DNA-binding domain DUF5305 PF17231.2 gi|55379562|ref|YP_137412.1| - 3e-21 75.8 1.3 1.9e-12 47.1 1.3 2.5 2 0 0 2 2 2 2 Family of unknown function (DUF5305) Tyr_Deacylase PF02580.16 gi|55379562|ref|YP_137412.1| - 0.11 13.0 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 D-Tyr-tRNA(Tyr) deacylase DUF1102 PF06510.11 gi|55379563|ref|YP_137413.1| - 0.034 14.3 0.1 0.099 12.8 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1102) CopD PF05425.13 gi|55379563|ref|YP_137413.1| - 0.044 14.2 3.5 0.43 11.0 0.4 2.6 2 1 1 3 3 3 0 Copper resistance protein D DUF3040 PF11239.8 gi|55379563|ref|YP_137413.1| - 3.4 8.0 9.1 2.2 8.6 1.8 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) DUF2069 PF09842.9 gi|55379566|ref|YP_137416.1| - 0.013 15.6 0.1 0.022 14.9 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) DUF4131 PF13567.6 gi|55379566|ref|YP_137416.1| - 0.16 11.7 1.9 0.2 11.3 1.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PCuAC PF04314.13 gi|55379567|ref|YP_137417.1| - 0.023 14.5 0.0 0.064 13.1 0.0 1.8 1 0 0 1 1 1 0 Copper chaperone PCu(A)C DUF5305 PF17231.2 gi|55379568|ref|YP_137418.1| - 3.3e-50 170.5 0.1 6.4e-50 169.6 0.1 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5305) Peptidase_S24 PF00717.23 gi|55379569|ref|YP_137419.1| - 1e-07 31.8 0.1 2.2e-07 30.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like DUF2231 PF09990.9 gi|55379571|ref|YP_137421.1| - 0.052 14.0 0.1 0.063 13.7 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) Deltameth_res PF16020.5 gi|55379571|ref|YP_137421.1| - 1.1 9.2 2.7 1.2 9.0 0.2 1.9 2 0 0 2 2 2 0 Deltamethrin resistance VirB3 PF05101.13 gi|55379574|ref|YP_137424.1| - 0.06 13.6 3.9 0.086 13.1 3.9 1.3 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DUF2628 PF10947.8 gi|55379574|ref|YP_137424.1| - 0.35 11.2 2.6 0.44 10.9 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF5338 PF17273.2 gi|55379576|ref|YP_137426.1| - 0.17 12.0 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5338) NIR_SIR PF01077.22 gi|55379578|ref|YP_137428.1| - 1.2e-45 154.9 0.2 8.3e-36 122.9 0.0 2.7 3 0 0 3 3 3 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|55379578|ref|YP_137428.1| - 3.4e-37 126.1 0.0 4.8e-18 64.8 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain UvrB_inter PF17757.1 gi|55379581|ref|YP_137431.1| - 1.6e-31 108.3 0.0 5.3e-31 106.7 0.0 2.0 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|55379581|ref|YP_137431.1| - 3.4e-18 65.2 0.9 3.4e-18 65.2 0.9 1.8 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|55379581|ref|YP_137431.1| - 2.8e-17 63.0 0.0 1.2e-16 61.0 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|55379581|ref|YP_137431.1| - 4.8e-11 42.0 9.1 2.1e-10 40.0 9.1 2.2 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.15 gi|55379581|ref|YP_137431.1| - 2.8e-07 30.7 0.0 2.5e-06 27.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|55379581|ref|YP_137431.1| - 0.00071 19.3 0.1 0.062 13.0 0.0 2.8 2 1 1 3 3 3 1 AAA domain DEAD PF00270.29 gi|55379581|ref|YP_137431.1| - 0.0011 18.8 0.5 0.019 14.7 0.0 3.3 4 1 0 4 4 4 1 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|55379581|ref|YP_137431.1| - 0.0049 17.2 0.1 5.4 7.3 0.1 2.9 3 0 0 3 3 3 2 AAA domain AAA PF00004.29 gi|55379581|ref|YP_137431.1| - 0.0087 16.5 0.2 1.6 9.1 0.0 3.8 4 0 0 4 4 4 1 ATPase family associated with various cellular activities (AAA) UB2H PF14814.6 gi|55379581|ref|YP_137431.1| - 0.015 15.3 0.0 0.054 13.5 0.0 1.9 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain AAA_22 PF13401.6 gi|55379581|ref|YP_137431.1| - 0.035 14.4 0.2 5.8 7.2 0.0 3.0 2 0 0 2 2 2 0 AAA domain Met_synt_B12 PF02965.17 gi|55379581|ref|YP_137431.1| - 0.037 13.5 0.9 0.081 12.4 0.1 2.0 2 0 0 2 2 2 0 Vitamin B12 dependent methionine synthase, activation domain DUF87 PF01935.17 gi|55379581|ref|YP_137431.1| - 0.07 13.2 0.0 0.07 13.2 0.0 2.7 4 1 1 5 5 5 0 Helicase HerA, central domain Cofilin_ADF PF00241.20 gi|55379581|ref|YP_137431.1| - 0.12 12.2 0.1 0.34 10.7 0.1 1.7 1 0 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein ZapB PF06005.12 gi|55379581|ref|YP_137431.1| - 5.5 7.5 7.3 41 4.7 1.0 3.2 2 0 0 2 2 2 0 Cell division protein ZapB HATPase_c PF02518.26 gi|55379582|ref|YP_137432.1| - 2.9e-12 47.1 0.0 7.6e-12 45.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|55379582|ref|YP_137432.1| - 1.4e-05 24.7 5.9 6.4e-05 22.6 5.9 2.1 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|55379582|ref|YP_137432.1| - 6.9e-05 22.8 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|55379582|ref|YP_137432.1| - 0.038 13.8 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|55379582|ref|YP_137432.1| - 0.044 13.7 0.0 0.075 13.0 0.0 1.3 1 0 0 1 1 1 0 GHKL domain DUF1440 PF07274.12 gi|55379582|ref|YP_137432.1| - 0.1 12.9 1.3 0.3 11.4 1.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) Methyltransf_25 PF13649.6 gi|55379583|ref|YP_137433.1| - 0.00061 20.4 0.1 0.0011 19.7 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|55379583|ref|YP_137433.1| - 0.0024 17.5 0.2 0.0047 16.5 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|55379583|ref|YP_137433.1| - 0.0045 17.6 0.1 0.01 16.5 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase domain GATase_3 PF07685.14 gi|55379583|ref|YP_137433.1| - 0.0086 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain PCMT PF01135.19 gi|55379583|ref|YP_137433.1| - 0.023 14.4 0.0 0.041 13.6 0.0 1.3 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|55379583|ref|YP_137433.1| - 0.097 12.3 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltrans_RNA PF04452.14 gi|55379583|ref|YP_137433.1| - 0.14 11.4 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase TP_methylase PF00590.20 gi|55379584|ref|YP_137434.1| - 5.8e-39 134.2 0.6 8.3e-39 133.7 0.6 1.3 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|55379585|ref|YP_137435.1| - 2.7e-40 138.6 0.6 3.4e-40 138.3 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|55379585|ref|YP_137435.1| - 0.0012 19.2 0.0 0.0019 18.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily RraB PF06877.11 gi|55379585|ref|YP_137435.1| - 0.057 14.2 0.0 0.24 12.1 0.0 2.0 2 0 0 2 2 2 0 Regulator of ribonuclease activity B CbiG_N PF11760.8 gi|55379586|ref|YP_137436.1| - 1.3e-26 92.4 0.0 3.1e-26 91.2 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|55379586|ref|YP_137436.1| - 8.9e-24 84.3 0.5 4.5e-23 82.0 0.1 2.1 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|55379586|ref|YP_137436.1| - 0.0005 20.7 1.7 0.0065 17.1 1.1 2.6 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain adh_short_C2 PF13561.6 gi|55379587|ref|YP_137437.1| - 1.4e-63 214.6 0.2 1.7e-63 214.3 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|55379587|ref|YP_137437.1| - 4e-55 186.3 0.1 4.9e-55 186.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|55379587|ref|YP_137437.1| - 1.6e-13 51.0 0.0 2.2e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55379587|ref|YP_137437.1| - 4.8e-10 39.3 0.1 7.6e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|55379587|ref|YP_137437.1| - 8.6e-06 25.0 0.5 1.7e-05 24.0 0.3 1.5 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|55379587|ref|YP_137437.1| - 0.0085 16.0 0.3 0.012 15.5 0.3 1.5 1 1 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|55379587|ref|YP_137437.1| - 0.024 14.0 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase HATPase_c PF02518.26 gi|55379587|ref|YP_137437.1| - 0.086 13.4 0.5 1.4 9.5 0.0 2.3 1 1 1 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RmlD_sub_bind PF04321.17 gi|55379587|ref|YP_137437.1| - 0.11 11.6 0.2 0.2 10.7 0.2 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain TP_methylase PF00590.20 gi|55379588|ref|YP_137438.1| - 4.5e-43 147.7 0.1 5.8e-43 147.3 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|55379590|ref|YP_137440.1| - 6.1e-32 111.3 0.3 7.3e-32 111.0 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Fer4_15 PF13459.6 gi|55379591|ref|YP_137441.1| - 1.1e-19 71.0 8.9 1.7e-19 70.3 8.9 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|55379591|ref|YP_137441.1| - 7e-06 26.5 3.7 1.2e-05 25.7 3.7 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I LAGLIDADG_3 PF14528.6 gi|55379592|ref|YP_137442.1| - 0.016 15.5 0.0 0.039 14.3 0.0 1.6 2 0 0 2 2 2 0 LAGLIDADG-like domain Rhabdo_NV PF02484.15 gi|55379592|ref|YP_137442.1| - 0.035 14.3 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 Rhabdovirus Non-virion protein CbiX PF01903.17 gi|55379593|ref|YP_137443.1| - 2.3e-42 143.7 0.0 9.3e-21 74.2 0.2 2.6 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|55379593|ref|YP_137443.1| - 7.2e-08 32.4 0.1 1.2e-07 31.6 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|55379593|ref|YP_137443.1| - 6.2e-05 22.5 0.0 0.033 13.5 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|55379593|ref|YP_137443.1| - 0.0078 16.1 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|55379593|ref|YP_137443.1| - 0.043 14.2 1.1 2.1 8.8 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) DUF3209 PF11483.8 gi|55379594|ref|YP_137444.1| - 1.9e-55 186.6 3.1 2.2e-55 186.4 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) T3SS_needle_E PF08988.10 gi|55379594|ref|YP_137444.1| - 0.011 15.8 0.2 0.026 14.7 0.2 1.5 1 0 0 1 1 1 0 Type III secretion system, cytoplasmic E component of needle PQQ_3 PF13570.6 gi|55379595|ref|YP_137445.1| - 7.2e-06 26.3 32.7 0.31 11.6 0.3 8.8 6 2 2 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|55379595|ref|YP_137445.1| - 0.0016 18.3 12.3 21 5.3 0.2 7.1 6 1 0 7 7 7 4 PQQ enzyme repeat DUF3552 PF12072.8 gi|55379596|ref|YP_137446.1| - 4.4e-12 45.9 38.2 8.9e-09 35.1 15.0 2.4 2 1 1 3 3 2 2 Domain of unknown function (DUF3552) Exonuc_VII_L PF02601.15 gi|55379596|ref|YP_137446.1| - 0.01 15.5 6.5 0.013 15.1 6.5 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4200 PF13863.6 gi|55379596|ref|YP_137446.1| - 0.014 15.8 21.0 0.052 14.0 21.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) V_ATPase_I PF01496.19 gi|55379596|ref|YP_137446.1| - 0.019 12.9 1.4 0.022 12.7 1.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.11 gi|55379596|ref|YP_137446.1| - 0.039 12.8 15.1 0.053 12.4 15.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Fumarate_red_D PF02313.17 gi|55379596|ref|YP_137446.1| - 0.041 14.0 2.6 0.041 14.0 2.6 1.5 1 1 1 2 2 2 0 Fumarate reductase subunit D DUF2207 PF09972.9 gi|55379596|ref|YP_137446.1| - 0.043 12.6 0.0 0.063 12.0 0.0 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF812 PF05667.11 gi|55379596|ref|YP_137446.1| - 0.1 11.5 12.9 0.14 11.0 12.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Atg14 PF10186.9 gi|55379596|ref|YP_137446.1| - 0.14 11.3 8.5 0.19 10.8 8.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|55379596|ref|YP_137446.1| - 0.52 10.4 14.6 0.77 9.8 14.6 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|55379596|ref|YP_137446.1| - 1.5 9.2 19.7 29 5.0 19.8 2.0 1 1 0 1 1 1 0 Fez1 OmpH PF03938.14 gi|55379596|ref|YP_137446.1| - 1.8 8.9 20.5 3.4 8.0 4.8 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF16 PF01519.16 gi|55379596|ref|YP_137446.1| - 1.9 9.0 8.1 91 3.6 8.1 2.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF3450 PF11932.8 gi|55379596|ref|YP_137446.1| - 3.9 6.7 16.0 2.6 7.3 14.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Jnk-SapK_ap_N PF09744.9 gi|55379596|ref|YP_137446.1| - 9.8 6.4 22.0 17 5.6 22.0 1.4 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 CbtA PF09490.10 gi|55379597|ref|YP_137447.1| - 2e-32 112.9 33.8 3.8e-32 112.0 33.8 1.4 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF4064 PF13273.6 gi|55379597|ref|YP_137447.1| - 0.065 13.5 3.4 2.6 8.4 2.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) YqhR PF11085.8 gi|55379597|ref|YP_137447.1| - 0.7 9.8 0.1 0.7 9.8 0.1 2.4 3 1 0 3 3 3 0 Conserved membrane protein YqhR CbtB PF09489.10 gi|55379598|ref|YP_137448.1| - 1.8e-13 50.4 1.9 2.4e-13 50.0 1.9 1.2 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) AAA_lid_2 PF17863.1 gi|55379599|ref|YP_137449.1| - 7.7e-21 73.7 2.3 7.7e-21 73.7 2.3 2.0 2 0 0 2 2 2 1 AAA lid domain VWA_2 PF13519.6 gi|55379599|ref|YP_137449.1| - 6.5e-13 49.3 0.0 1.5e-12 48.1 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|55379599|ref|YP_137449.1| - 1.3e-11 44.3 0.0 3.5e-09 36.3 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.28 gi|55379599|ref|YP_137449.1| - 4.6e-10 40.0 0.0 7.8e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|55379599|ref|YP_137449.1| - 1.8e-09 37.7 0.0 1.3e-05 25.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|55379599|ref|YP_137449.1| - 1.7e-05 24.0 0.1 9.8e-05 21.5 0.0 2.2 3 0 0 3 3 3 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|55379599|ref|YP_137449.1| - 0.0029 17.3 0.0 0.076 12.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|55379599|ref|YP_137449.1| - 0.033 14.6 0.2 0.033 14.6 0.2 3.4 3 2 0 3 3 3 0 AAA ATPase domain AAA_3 PF07726.11 gi|55379599|ref|YP_137449.1| - 0.16 11.8 0.0 3 7.7 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SDA1 PF05285.12 gi|55379599|ref|YP_137449.1| - 3.7 6.9 23.0 6 6.2 23.0 1.4 1 0 0 1 1 1 0 SDA1 CobN-Mg_chel PF02514.16 gi|55379600|ref|YP_137450.1| - 0 1262.9 0.0 0 1262.6 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|55379600|ref|YP_137450.1| - 0.019 14.7 0.0 0.052 13.3 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CbiC PF02570.15 gi|55379601|ref|YP_137451.1| - 8.6e-54 182.2 1.3 1e-53 182.0 1.3 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|55379602|ref|YP_137452.1| - 2.8e-31 109.1 0.3 3.3e-31 108.9 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2062 PF09835.9 gi|55379603|ref|YP_137453.1| - 1.5e-19 70.3 3.7 1.7e-19 70.1 3.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) DUF2755 PF10954.8 gi|55379603|ref|YP_137453.1| - 0.0064 16.4 3.8 1.5 8.8 0.0 2.8 2 1 1 3 3 3 2 Protein of unknown function (DUF2755) FeoB_associated PF12669.7 gi|55379603|ref|YP_137453.1| - 0.33 11.4 1.0 1.4 9.4 0.1 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DUF202 PF02656.15 gi|55379603|ref|YP_137453.1| - 2.4 8.7 5.9 22 5.6 5.9 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Phage_holin_3_6 PF07332.11 gi|55379603|ref|YP_137453.1| - 3.5 7.7 15.7 48 4.0 15.7 2.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III CbiX PF01903.17 gi|55379604|ref|YP_137454.1| - 1.7e-20 73.4 0.1 2.7e-10 40.5 0.0 2.2 2 0 0 2 2 2 2 CbiX SSXRD PF09514.10 gi|55379604|ref|YP_137454.1| - 0.09 12.4 0.6 5.2 6.7 0.1 2.2 2 0 0 2 2 2 0 SSXRD motif TrkA_C PF02080.21 gi|55379605|ref|YP_137455.1| - 3.8e-17 61.9 0.0 1.1e-16 60.4 0.0 1.7 2 0 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.21 gi|55379606|ref|YP_137456.1| - 6.6e-45 153.5 36.2 8e-45 153.2 36.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family ADH_zinc_N PF00107.26 gi|55379607|ref|YP_137457.1| - 3e-39 134.0 0.4 2e-38 131.3 0.2 2.2 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|55379607|ref|YP_137457.1| - 2e-22 80.6 0.0 3.7e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|55379607|ref|YP_137457.1| - 1.2e-17 63.7 0.0 2.7e-17 62.6 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|55379607|ref|YP_137457.1| - 1.2e-05 24.9 0.2 1.7e-05 24.4 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase DapB_N PF01113.20 gi|55379607|ref|YP_137457.1| - 0.00067 19.8 0.4 0.0013 18.8 0.4 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.21 gi|55379607|ref|YP_137457.1| - 0.0011 18.4 3.0 0.0014 18.0 1.5 2.0 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 gi|55379607|ref|YP_137457.1| - 0.0047 17.3 0.3 0.009 16.4 0.3 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|55379607|ref|YP_137457.1| - 0.0094 15.3 0.0 0.56 9.5 0.0 2.3 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|55379607|ref|YP_137457.1| - 0.05 13.5 1.2 0.19 11.6 1.2 1.9 1 1 0 1 1 1 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|55379607|ref|YP_137457.1| - 0.085 11.9 0.1 0.16 11.1 0.1 1.5 1 1 0 1 1 1 0 RmlD substrate binding domain CMAS PF02353.20 gi|55379607|ref|YP_137457.1| - 0.099 11.9 0.1 0.14 11.5 0.1 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Epimerase PF01370.21 gi|55379607|ref|YP_137457.1| - 0.1 12.1 0.3 0.15 11.5 0.3 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ACP_syn_III_C PF08541.10 gi|55379607|ref|YP_137457.1| - 4.4 7.5 5.1 0.64 10.2 0.2 2.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF1427 PF07235.11 gi|55379608|ref|YP_137458.1| - 5.4e-07 29.5 5.7 6e-07 29.3 5.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) Bacillus_PapR PF05968.11 gi|55379608|ref|YP_137458.1| - 0.89 9.5 3.0 0.52 10.2 1.2 1.6 2 0 0 2 2 2 0 Bacillus PapR protein CarboxypepD_reg PF13620.6 gi|55379610|ref|YP_137460.1| - 1.3e-14 54.2 16.3 3.7e-12 46.4 4.8 4.7 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain DDOST_48kD PF03345.14 gi|55379610|ref|YP_137460.1| - 5.4e-10 38.7 0.1 1.4e-09 37.4 0.0 1.6 2 0 0 2 2 2 1 Oligosaccharyltransferase 48 kDa subunit beta ABC_transp_aux PF09822.9 gi|55379610|ref|YP_137460.1| - 3.7e-09 36.5 0.0 7.2e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system PGF-CTERM PF18204.1 gi|55379610|ref|YP_137460.1| - 0.00027 20.8 5.2 0.00053 19.9 5.2 1.5 1 0 0 1 1 1 1 PGF-CTERM motif PEGA PF08308.11 gi|55379610|ref|YP_137460.1| - 0.0011 18.8 1.6 2.3 8.2 0.1 3.9 3 0 0 3 3 3 2 PEGA domain DUF4350 PF14258.6 gi|55379610|ref|YP_137460.1| - 0.0017 18.7 0.1 0.013 16.0 0.0 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) PHP PF02811.19 gi|55379610|ref|YP_137460.1| - 0.14 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 PHP domain IU_nuc_hydro PF01156.19 gi|55379611|ref|YP_137461.1| - 5.5e-73 246.2 4.1 6.3e-73 246.0 4.1 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase MR_MLE_C PF13378.6 gi|55379612|ref|YP_137462.1| - 1.9e-42 145.3 0.5 2.8e-42 144.8 0.5 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|55379612|ref|YP_137462.1| - 5.5e-11 42.7 0.0 9.5e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lactamase_B_2 PF12706.7 gi|55379613|ref|YP_137463.1| - 6.6e-15 55.2 0.2 9.4e-15 54.7 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|55379613|ref|YP_137463.1| - 8e-12 45.3 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TRAM_2 PF18693.1 gi|55379613|ref|YP_137463.1| - 0.024 14.8 0.2 0.06 13.5 0.2 1.6 1 0 0 1 1 1 0 TRAM domain GFO_IDH_MocA PF01408.22 gi|55379614|ref|YP_137464.1| - 8.4e-22 78.2 0.2 1.5e-21 77.4 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|55379614|ref|YP_137464.1| - 0.013 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Peptidase_M78 PF06114.13 gi|55379614|ref|YP_137464.1| - 0.059 13.3 0.1 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 IrrE N-terminal-like domain Aldedh PF00171.22 gi|55379616|ref|YP_137466.1| - 7.1e-164 545.7 1.1 8.2e-164 545.5 1.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family zf-Di19 PF05605.12 gi|55379617|ref|YP_137467.1| - 0.015 15.6 0.9 0.019 15.3 0.9 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Acetyltransf_5 PF13444.6 gi|55379617|ref|YP_137467.1| - 0.063 14.0 0.0 0.063 14.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_M48 PF01435.18 gi|55379618|ref|YP_137468.1| - 4e-27 95.3 0.3 2.7e-25 89.3 0.3 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|55379618|ref|YP_137468.1| - 1e-05 24.9 0.0 1.7e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF4538 PF15061.6 gi|55379618|ref|YP_137468.1| - 0.041 13.6 1.5 0.11 12.3 1.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4538) Phage_holin_3_6 PF07332.11 gi|55379618|ref|YP_137468.1| - 0.16 12.0 15.6 0.2 11.7 5.9 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III FAA_hydrolase PF01557.18 gi|55379619|ref|YP_137469.1| - 9.6e-48 162.7 0.0 1.1e-47 162.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family UvrC_HhH_N PF08459.11 gi|55379620|ref|YP_137470.1| - 5e-43 146.7 0.0 1.1e-42 145.6 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|55379620|ref|YP_137470.1| - 4.6e-12 46.3 0.0 1.1e-11 45.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|55379620|ref|YP_137470.1| - 3.5e-10 39.8 0.0 1e-09 38.3 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif UVR PF02151.19 gi|55379620|ref|YP_137470.1| - 1e-08 34.6 3.9 2.6e-08 33.3 1.5 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif HHH PF00633.23 gi|55379620|ref|YP_137470.1| - 1.8e-08 33.8 0.2 0.00015 21.5 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif GIY-YIG PF01541.24 gi|55379620|ref|YP_137470.1| - 2.4e-07 30.9 0.0 4.1e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|55379620|ref|YP_137470.1| - 0.0012 19.4 0.0 0.024 15.2 0.0 2.8 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|55379620|ref|YP_137470.1| - 0.0025 18.2 0.0 1.1 9.6 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Hairy_orange PF07527.13 gi|55379620|ref|YP_137470.1| - 0.12 12.6 0.0 0.43 10.8 0.0 1.9 2 0 0 2 2 2 0 Hairy Orange HHH_3 PF12836.7 gi|55379620|ref|YP_137470.1| - 0.15 12.3 0.0 1.3 9.3 0.0 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|55379620|ref|YP_137470.1| - 0.17 12.3 0.0 0.69 10.4 0.0 2.1 2 0 0 2 2 2 0 IMS family HHH motif DUF3493 PF11998.8 gi|55379621|ref|YP_137471.1| - 0.048 13.8 2.8 0.049 13.8 1.2 1.8 1 1 1 2 2 2 0 Low psii accumulation1 / Rep27 UPF0547 PF10571.9 gi|55379622|ref|YP_137472.1| - 0.00017 21.6 1.7 0.00028 20.9 1.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|55379622|ref|YP_137472.1| - 0.00062 19.4 0.5 0.00089 18.9 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|55379622|ref|YP_137472.1| - 0.0038 16.6 1.4 0.0061 15.9 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|55379622|ref|YP_137472.1| - 0.004 17.1 1.5 0.0058 16.6 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|55379622|ref|YP_137472.1| - 0.077 12.9 1.9 8.3 6.4 0.1 2.2 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-C2H2_4 PF13894.6 gi|55379622|ref|YP_137472.1| - 0.14 13.1 1.6 9.4 7.4 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 gi|55379622|ref|YP_137472.1| - 0.18 12.5 1.5 0.29 11.9 1.5 1.2 1 0 0 1 1 1 0 zinc-ribbon family DUF588 PF04535.12 gi|55379622|ref|YP_137472.1| - 0.68 9.7 5.2 1.2 9.0 5.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF588) Aminotran_5 PF00266.19 gi|55379623|ref|YP_137473.1| - 9.7e-28 97.2 0.0 1.3e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V EspB PF05802.11 gi|55379623|ref|YP_137473.1| - 0.015 15.3 0.0 0.16 11.9 0.0 2.6 3 1 1 4 4 4 0 Enterobacterial EspB protein TipAS PF07739.13 gi|55379623|ref|YP_137473.1| - 0.24 11.9 3.0 1.6 9.3 2.6 2.5 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain HalOD1 PF18545.1 gi|55379624|ref|YP_137474.1| - 6.1e-19 68.1 0.1 6.6e-19 68.0 0.1 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 DNA_ligase_aden PF01653.18 gi|55379625|ref|YP_137475.1| - 4.1e-109 364.5 0.0 5.4e-109 364.1 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|55379625|ref|YP_137475.1| - 1.2e-28 98.8 2.5 2.3e-28 97.9 2.5 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|55379625|ref|YP_137475.1| - 2.2e-18 66.1 2.9 1.9e-16 59.9 0.1 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|55379625|ref|YP_137475.1| - 2.3e-17 63.3 0.1 1.4e-07 32.0 0.0 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|55379625|ref|YP_137475.1| - 2.9e-11 43.6 0.0 4.9e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 gi|55379625|ref|YP_137475.1| - 7.3e-07 28.7 0.1 0.49 10.4 0.0 4.6 4 0 0 4 4 4 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|55379625|ref|YP_137475.1| - 0.00012 22.6 0.1 0.029 14.9 0.0 3.7 2 2 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold DNA_ligase_ZBD PF03119.16 gi|55379625|ref|YP_137475.1| - 0.00019 21.4 4.8 0.00027 20.9 2.7 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain Response_reg PF00072.24 gi|55379626|ref|YP_137476.1| - 2.4e-20 72.7 0.7 1.9e-19 69.9 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|55379626|ref|YP_137476.1| - 1.4e-16 61.0 0.1 2.9e-16 60.0 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|55379626|ref|YP_137476.1| - 1.7e-14 53.9 0.2 1e-13 51.3 0.1 2.5 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|55379626|ref|YP_137476.1| - 6.2e-13 49.0 9.6 4.6e-08 33.3 0.0 4.2 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|55379626|ref|YP_137476.1| - 5.7e-12 45.4 0.1 4.7e-05 23.3 0.0 3.7 3 0 0 3 3 3 2 PAS domain PAS_9 PF13426.7 gi|55379626|ref|YP_137476.1| - 6.3e-09 36.0 0.2 0.031 14.5 0.0 4.8 5 0 0 5 5 5 2 PAS domain PAS_7 PF12860.7 gi|55379626|ref|YP_137476.1| - 4.8e-08 33.2 0.1 1.1e-05 25.5 0.0 3.1 3 0 0 3 3 3 1 PAS fold PAS PF00989.25 gi|55379626|ref|YP_137476.1| - 6.7e-08 32.5 0.1 0.0059 16.6 0.0 3.5 3 1 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|55379626|ref|YP_137476.1| - 1.6e-06 28.0 3.7 2.5e-06 27.4 1.6 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|55379626|ref|YP_137476.1| - 0.066 13.2 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.15 gi|55379626|ref|YP_137476.1| - 0.13 12.5 0.0 0.32 11.3 0.0 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain ABC2_membrane_2 PF12679.7 gi|55379627|ref|YP_137477.1| - 8.2e-80 268.2 13.2 9.4e-80 268.0 13.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|55379627|ref|YP_137477.1| - 2.5e-09 37.4 7.6 2.5e-09 37.4 7.6 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|55379627|ref|YP_137477.1| - 1.2e-08 34.6 10.7 2.4e-08 33.6 10.7 1.5 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|55379627|ref|YP_137477.1| - 4.3e-08 32.7 9.2 4.3e-08 32.7 9.2 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|55379627|ref|YP_137477.1| - 7.5e-07 28.9 2.9 7.5e-07 28.9 2.9 2.2 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|55379628|ref|YP_137478.1| - 5e-29 101.6 0.0 8.1e-29 100.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55379628|ref|YP_137478.1| - 3.3e-12 46.8 0.3 9.2e-08 32.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|55379628|ref|YP_137478.1| - 5.1e-08 33.5 0.0 1.4e-07 32.1 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|55379628|ref|YP_137478.1| - 0.0037 17.8 0.7 0.0074 16.8 0.7 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|55379628|ref|YP_137478.1| - 0.0041 16.6 0.0 0.8 9.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|55379628|ref|YP_137478.1| - 0.013 15.5 0.0 1.3 9.2 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|55379628|ref|YP_137478.1| - 0.016 15.0 0.0 0.073 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|55379628|ref|YP_137478.1| - 0.016 14.9 0.0 0.53 10.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|55379628|ref|YP_137478.1| - 0.029 14.1 0.1 0.075 12.8 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|55379628|ref|YP_137478.1| - 0.077 12.9 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase Acetyltransf_6 PF13480.7 gi|55379628|ref|YP_137478.1| - 0.088 13.0 1.2 1.1 9.4 0.0 2.7 2 1 1 3 3 3 0 Acetyltransferase (GNAT) domain AAA_10 PF12846.7 gi|55379628|ref|YP_137478.1| - 0.095 11.6 0.0 0.18 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain SbcCD_C PF13558.6 gi|55379628|ref|YP_137478.1| - 0.11 12.8 0.2 0.97 9.7 0.0 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|55379628|ref|YP_137478.1| - 0.16 11.6 0.1 0.53 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Beta_helix PF13229.6 gi|55379630|ref|YP_137480.1| - 4.8e-23 81.7 7.9 4.4e-21 75.4 1.3 3.0 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|55379630|ref|YP_137480.1| - 5.8e-09 35.6 2.1 1.1e-05 24.8 0.1 2.8 1 1 0 2 2 2 2 Periplasmic copper-binding protein (NosD) Transglut_core PF01841.19 gi|55379631|ref|YP_137481.1| - 1.1e-29 103.1 0.9 4e-29 101.3 0.0 2.4 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF3488 PF11992.8 gi|55379631|ref|YP_137481.1| - 5e-05 22.4 0.9 5e-05 22.4 0.9 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF3488) DUF4129 PF13559.6 gi|55379631|ref|YP_137481.1| - 0.00035 20.8 4.8 0.00035 20.8 4.8 3.1 3 1 0 3 3 3 1 Domain of unknown function (DUF4129) YtkA PF13115.6 gi|55379631|ref|YP_137481.1| - 0.00048 20.7 2.7 1.3 9.7 0.0 3.8 3 0 0 3 3 3 2 YtkA-like Transglut_core3 PF13471.6 gi|55379631|ref|YP_137481.1| - 0.0021 18.0 0.1 0.01 15.7 0.0 2.2 2 0 0 2 2 2 1 Transglutaminase-like superfamily FTP PF07504.13 gi|55379631|ref|YP_137481.1| - 0.42 10.5 2.1 15 5.5 0.2 4.0 3 1 0 3 3 3 0 Fungalysin/Thermolysin Propeptide Motif Sporozoite_P67 PF05642.11 gi|55379632|ref|YP_137482.1| - 0.27 9.3 0.8 0.28 9.2 0.8 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF58 PF01882.18 gi|55379633|ref|YP_137483.1| - 8.3e-18 64.5 0.1 3e-17 62.7 0.1 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|55379633|ref|YP_137483.1| - 8.8e-10 38.8 0.8 8.8e-10 38.8 0.8 3.0 2 2 1 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|55379633|ref|YP_137483.1| - 2.3e-07 30.9 0.6 9.9e-07 28.9 0.6 2.2 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|55379633|ref|YP_137483.1| - 3.8e-05 23.2 0.0 6.6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|55379633|ref|YP_137483.1| - 0.022 15.0 0.0 0.053 13.8 0.0 1.6 1 0 0 1 1 1 0 CARDB SHOCT PF09851.9 gi|55379635|ref|YP_137485.1| - 2.3e-08 33.5 2.6 5e-08 32.4 2.6 1.6 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55379635|ref|YP_137485.1| - 2e-05 24.5 4.2 2e-05 24.5 4.2 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) MAPEG PF01124.18 gi|55379635|ref|YP_137485.1| - 0.049 13.5 0.3 0.085 12.8 0.3 1.3 1 0 0 1 1 1 0 MAPEG family GvpG PF05120.12 gi|55379635|ref|YP_137485.1| - 0.31 11.1 8.0 0.33 11.0 6.7 1.8 1 1 1 2 2 2 0 Gas vesicle protein G AAA_3 PF07726.11 gi|55379636|ref|YP_137486.1| - 3.3e-65 217.8 0.1 5.2e-65 217.2 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|55379636|ref|YP_137486.1| - 1.1e-14 54.0 2.0 2e-14 53.2 2.0 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|55379636|ref|YP_137486.1| - 3.6e-14 53.0 0.0 7.2e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|55379636|ref|YP_137486.1| - 0.00024 21.5 0.0 0.00076 19.9 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|55379636|ref|YP_137486.1| - 0.00034 20.4 0.0 0.0017 18.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|55379636|ref|YP_137486.1| - 0.0025 16.9 0.0 0.0048 16.0 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|55379636|ref|YP_137486.1| - 0.042 13.6 0.0 0.48 10.1 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ATPase PF06745.13 gi|55379636|ref|YP_137486.1| - 0.07 12.5 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 KaiC Mg_chelatase PF01078.21 gi|55379636|ref|YP_137486.1| - 0.11 11.9 0.0 3.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Cys_Met_Meta_PP PF01053.20 gi|55379637|ref|YP_137487.1| - 7.6e-130 432.9 0.0 8.6e-130 432.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|55379637|ref|YP_137487.1| - 2.1e-11 43.6 0.0 3e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|55379637|ref|YP_137487.1| - 5.6e-08 32.5 0.2 1.1e-07 31.6 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|55379637|ref|YP_137487.1| - 1.1e-06 27.9 0.0 1.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|55379637|ref|YP_137487.1| - 0.076 12.3 0.1 0.26 10.5 0.1 1.8 1 1 0 1 1 1 0 Beta-eliminating lyase Abhydrolase_1 PF00561.20 gi|55379638|ref|YP_137488.1| - 6.5e-31 107.9 0.3 8.2e-31 107.6 0.3 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|55379638|ref|YP_137488.1| - 0.00039 19.8 0.0 0.0014 17.9 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|55379638|ref|YP_137488.1| - 0.00063 19.3 0.2 1.1 8.6 0.1 2.6 2 1 0 2 2 2 2 Prolyl oligopeptidase family GRA6 PF05084.13 gi|55379638|ref|YP_137488.1| - 0.05 13.6 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Granule antigen protein (GRA6) HypA PF01155.19 gi|55379639|ref|YP_137489.1| - 0.0093 16.0 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|55379639|ref|YP_137489.1| - 0.0096 15.3 2.9 1.3 8.5 1.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|55379639|ref|YP_137489.1| - 0.23 11.2 0.5 0.23 11.2 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Anti-TRAP PF15777.5 gi|55379639|ref|YP_137489.1| - 0.7 9.9 4.0 1.3 9.1 4.0 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein HscB_4_cys PF18256.1 gi|55379639|ref|YP_137489.1| - 2.6 8.0 7.1 19 5.2 7.1 2.3 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif HalOD2 PF18547.1 gi|55379639|ref|YP_137489.1| - 3.4 7.6 9.4 3.1 7.8 0.3 3.1 3 0 0 3 3 3 0 Halobacterial output domain 2 ApbA PF02558.16 gi|55379641|ref|YP_137491.1| - 1.4e-30 106.0 0.1 2.9e-30 104.9 0.1 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 gi|55379641|ref|YP_137491.1| - 2.7e-30 105.1 1.4 2.7e-30 105.1 0.3 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.17 gi|55379641|ref|YP_137491.1| - 0.00047 20.7 0.6 0.0013 19.2 0.0 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|55379641|ref|YP_137491.1| - 0.009 16.3 1.3 0.014 15.7 0.2 2.0 2 0 0 2 2 2 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|55379641|ref|YP_137491.1| - 0.021 15.1 1.4 0.032 14.5 0.4 2.0 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox PF00070.27 gi|55379641|ref|YP_137491.1| - 0.06 13.9 0.4 0.37 11.4 0.1 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|55379641|ref|YP_137491.1| - 0.27 10.8 5.5 0.48 9.9 5.5 1.6 1 1 0 1 1 1 0 FAD dependent oxidoreductase MR_MLE_C PF13378.6 gi|55379642|ref|YP_137492.1| - 2.3e-66 223.5 0.7 3.1e-66 223.1 0.7 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|55379642|ref|YP_137492.1| - 1.7e-26 92.8 0.0 3.2e-26 91.8 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Ku_C PF03730.14 gi|55379642|ref|YP_137492.1| - 0.15 12.7 0.0 0.42 11.3 0.0 1.7 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm DUF502 PF04367.13 gi|55379643|ref|YP_137493.1| - 8.7e-18 64.2 0.4 1.7e-17 63.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Fijivirus_P9-2 PF06837.11 gi|55379643|ref|YP_137493.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Fijivirus P9-2 protein Sigma_reg_N PF13800.6 gi|55379643|ref|YP_137493.1| - 2.7 8.4 4.6 6.3 7.2 0.2 2.8 3 0 0 3 3 3 0 Sigma factor regulator N-terminal ABC2_membrane_3 PF12698.7 gi|55379643|ref|YP_137493.1| - 5.6 6.0 10.2 8.4 5.4 10.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Aminotran_4 PF01063.19 gi|55379645|ref|YP_137494.1| - 1.9e-50 171.8 0.0 2.8e-50 171.3 0.0 1.3 1 0 0 1 1 1 1 Amino-transferase class IV DHBP_synthase PF00926.19 gi|55379646|ref|YP_137496.1| - 2.5e-59 200.0 0.2 2.9e-59 199.8 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|55379647|ref|YP_137497.1| - 2.3e-46 156.8 0.0 3.8e-46 156.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|55379647|ref|YP_137497.1| - 3.1e-07 30.3 0.5 7.6e-07 29.1 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|55379647|ref|YP_137497.1| - 1.6e-06 27.5 0.1 3.1e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55379647|ref|YP_137497.1| - 6.3e-06 26.0 0.4 1.2e-05 25.0 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|55379647|ref|YP_137497.1| - 2.1e-05 24.4 0.1 6.3e-05 22.8 0.1 1.8 1 1 1 2 2 2 1 HTH domain MarR PF01047.22 gi|55379647|ref|YP_137497.1| - 3.9e-05 23.5 0.0 7.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|55379647|ref|YP_137497.1| - 7.2e-05 22.9 0.0 0.00018 21.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|55379647|ref|YP_137497.1| - 8.7e-05 22.4 0.4 0.00023 21.1 0.2 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|55379647|ref|YP_137497.1| - 0.00028 20.5 0.1 0.00084 19.0 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|55379647|ref|YP_137497.1| - 0.00041 20.1 0.7 0.00041 20.1 0.7 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|55379647|ref|YP_137497.1| - 0.0041 17.2 0.1 0.48 10.6 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|55379647|ref|YP_137497.1| - 0.013 16.0 0.1 0.026 15.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|55379647|ref|YP_137497.1| - 0.016 15.0 0.6 0.036 13.9 0.6 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|55379647|ref|YP_137497.1| - 0.022 14.7 0.0 0.046 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|55379647|ref|YP_137497.1| - 0.025 14.4 0.0 0.055 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.27 gi|55379647|ref|YP_137497.1| - 0.039 13.9 0.1 0.078 12.9 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|55379647|ref|YP_137497.1| - 0.041 14.2 0.0 0.084 13.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|55379647|ref|YP_137497.1| - 0.098 12.6 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|55379647|ref|YP_137497.1| - 0.16 12.2 0.0 3.1 8.0 0.0 2.5 3 0 0 3 3 3 0 Winged helix DNA-binding domain Wyosine_form PF08608.12 gi|55379648|ref|YP_137498.1| - 1e-19 70.6 0.1 2.3e-19 69.5 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|55379648|ref|YP_137498.1| - 8.2e-19 68.6 0.4 1.7e-18 67.6 0.4 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Zn-ribbon_8 PF09723.10 gi|55379650|ref|YP_137500.1| - 1.1e-07 31.9 2.2 1.1e-07 31.9 2.2 2.1 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|55379650|ref|YP_137500.1| - 4e-05 23.6 1.3 4e-05 23.6 1.3 1.7 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|55379650|ref|YP_137500.1| - 0.0071 16.4 0.7 0.0071 16.4 0.7 2.0 2 0 0 2 2 2 1 Double zinc ribbon zf-C2H2 PF00096.26 gi|55379650|ref|YP_137500.1| - 0.015 15.7 3.5 0.44 11.1 0.1 3.0 3 0 0 3 3 3 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.6 gi|55379650|ref|YP_137500.1| - 0.021 14.7 7.1 0.098 12.6 0.1 2.9 3 0 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|55379650|ref|YP_137500.1| - 0.048 13.7 0.4 0.048 13.7 0.4 1.6 2 0 0 2 2 2 0 Transposase zinc-binding domain Anti-TRAP PF15777.5 gi|55379650|ref|YP_137500.1| - 0.066 13.2 3.3 0.5 10.4 0.5 2.2 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF2072 PF09845.9 gi|55379650|ref|YP_137500.1| - 0.11 12.8 0.6 0.18 12.1 0.6 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein A2L_zn_ribbon PF08792.10 gi|55379650|ref|YP_137500.1| - 0.22 11.3 5.3 1.5 8.6 0.0 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-Mss51 PF13824.6 gi|55379650|ref|YP_137500.1| - 0.26 11.4 5.5 2.2 8.5 0.9 2.4 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|55379650|ref|YP_137500.1| - 0.27 11.0 8.3 0.62 9.8 0.2 3.0 3 0 0 3 3 3 0 Rubredoxin metal binding domain zf-RRN7 PF11781.8 gi|55379650|ref|YP_137500.1| - 0.3 10.8 8.2 1.6 8.5 0.2 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|55379650|ref|YP_137500.1| - 0.32 11.0 0.2 0.32 11.0 0.2 2.7 3 0 0 3 3 3 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.12 gi|55379650|ref|YP_137500.1| - 0.32 11.0 5.3 10 6.2 0.2 2.9 3 0 0 3 3 3 0 PhnA Zinc-Ribbon Zn_Tnp_IS1 PF03811.13 gi|55379650|ref|YP_137500.1| - 0.35 10.6 14.0 0.35 10.6 1.6 2.9 3 0 0 3 3 3 0 InsA N-terminal domain zf-C2H2_4 PF13894.6 gi|55379650|ref|YP_137500.1| - 0.59 11.1 4.6 7.8 7.6 0.1 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger zf_UBZ PF18439.1 gi|55379650|ref|YP_137500.1| - 0.88 9.2 7.4 2 8.1 0.1 2.8 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|55379650|ref|YP_137500.1| - 0.89 9.6 4.6 9.4 6.3 0.7 2.3 1 1 1 2 2 2 0 CpXC protein zf-trcl PF13451.6 gi|55379650|ref|YP_137500.1| - 1 9.3 10.4 4.1 7.4 0.8 3.8 3 1 1 4 4 4 0 Probable zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|55379650|ref|YP_137500.1| - 1.6 8.3 9.6 1.6 8.3 0.3 2.7 2 1 2 4 4 4 0 TFIIB zinc-binding DUF1451 PF07295.11 gi|55379650|ref|YP_137500.1| - 2.3 8.3 6.5 0.26 11.3 0.7 2.0 2 0 0 2 2 2 0 Zinc-ribbon containing domain Ribosomal_L37ae PF01780.19 gi|55379650|ref|YP_137500.1| - 2.4 8.3 5.1 1.1 9.3 0.6 2.4 2 1 0 2 2 2 0 Ribosomal L37ae protein family zinc_ribbon_4 PF13717.6 gi|55379650|ref|YP_137500.1| - 2.6 8.1 8.2 11 6.1 2.6 3.1 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|55379650|ref|YP_137500.1| - 2.7 7.8 9.6 0.75 9.6 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|55379650|ref|YP_137500.1| - 3.1 7.7 9.6 3.6 7.4 3.1 3.0 2 1 1 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|55379650|ref|YP_137500.1| - 5.8 6.5 11.0 0.78 9.2 0.5 2.7 2 1 1 3 3 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|55379650|ref|YP_137500.1| - 5.8 6.9 10.8 5 7.1 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.7 gi|55379650|ref|YP_137500.1| - 6.1 7.3 10.1 1.8 9.0 0.1 3.0 3 0 0 3 3 2 0 zinc-finger binding domain of transposase IS66 CMD PF02627.20 gi|55379651|ref|YP_137501.1| - 3.2e-11 43.1 0.6 6.6e-11 42.1 0.6 1.6 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1440 PF07274.12 gi|55379652|ref|YP_137502.1| - 0.07 13.5 5.9 0.29 11.5 0.6 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) TrmB PF01978.19 gi|55379653|ref|YP_137503.1| - 2.1e-07 30.7 0.0 3e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|55379653|ref|YP_137503.1| - 1.8e-05 24.4 0.0 3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|55379653|ref|YP_137503.1| - 2.6e-05 24.2 0.1 6.8e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55379653|ref|YP_137503.1| - 2.7e-05 24.0 0.0 4.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|55379653|ref|YP_137503.1| - 3.5e-05 23.6 0.1 0.00012 21.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|55379653|ref|YP_137503.1| - 0.00047 19.6 0.0 0.00074 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|55379653|ref|YP_137503.1| - 0.00049 19.7 0.1 0.0011 18.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 gi|55379653|ref|YP_137503.1| - 0.00068 19.1 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain MarR PF01047.22 gi|55379653|ref|YP_137503.1| - 0.0025 17.7 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55379653|ref|YP_137503.1| - 0.003 17.5 0.0 0.0056 16.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|55379653|ref|YP_137503.1| - 0.016 15.0 0.0 0.027 14.3 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_38 PF13936.6 gi|55379653|ref|YP_137503.1| - 0.031 14.0 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|55379653|ref|YP_137503.1| - 0.033 14.3 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|55379653|ref|YP_137503.1| - 0.068 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.12 gi|55379653|ref|YP_137503.1| - 0.068 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_29 PF13551.6 gi|55379653|ref|YP_137503.1| - 0.089 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix NifU PF01106.17 gi|55379654|ref|YP_137504.1| - 1.3e-14 54.1 0.0 2.3e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 NifU-like domain CarS-like PF01864.17 gi|55379655|ref|YP_137505.1| - 6.9e-45 153.1 0.4 8e-45 152.9 0.4 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|55379655|ref|YP_137505.1| - 0.00016 21.5 3.0 0.00016 21.5 3.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|55379655|ref|YP_137505.1| - 3.4 7.5 11.6 1.3 8.9 2.4 2.8 2 1 0 2 2 2 0 YMGG-like Gly-zipper CrgA PF06781.12 gi|55379656|ref|YP_137506.1| - 0.13 12.3 0.1 0.15 12.1 0.1 1.1 1 0 0 1 1 1 0 Cell division protein CrgA SPC12 PF06645.13 gi|55379656|ref|YP_137506.1| - 0.39 10.8 0.2 0.39 10.8 0.2 2.1 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Porphobil_deam PF01379.20 gi|55379657|ref|YP_137507.1| - 7.3e-66 221.6 1.2 4.3e-52 176.6 0.8 2.3 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|55379657|ref|YP_137507.1| - 1.3e-10 41.5 0.2 3.2e-10 40.2 0.2 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Prothymosin PF03247.14 gi|55379657|ref|YP_137507.1| - 0.016 15.7 5.7 0.016 15.7 5.7 2.3 2 0 0 2 2 2 0 Prothymosin/parathymosin family TP_methylase PF00590.20 gi|55379658|ref|YP_137508.1| - 2.9e-55 187.5 0.7 3.4e-55 187.3 0.7 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RFamide_26RFa PF11109.8 gi|55379658|ref|YP_137508.1| - 0.22 12.1 0.0 0.35 11.4 0.0 1.3 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 HEM4 PF02602.15 gi|55379659|ref|YP_137509.1| - 7.4e-46 156.4 3.1 8.5e-46 156.2 3.1 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD PspA_IM30 PF04012.12 gi|55379660|ref|YP_137510.1| - 5.7e-28 98.0 24.6 7e-28 97.7 24.6 1.0 1 0 0 1 1 1 1 PspA/IM30 family AAA_13 PF13166.6 gi|55379660|ref|YP_137510.1| - 0.00034 19.4 12.0 0.00041 19.1 12.0 1.0 1 0 0 1 1 1 1 AAA domain YabA PF06156.13 gi|55379660|ref|YP_137510.1| - 0.00055 20.5 12.5 0.01 16.4 0.5 3.2 1 1 2 3 3 3 2 Initiation control protein YabA APG6_N PF17675.1 gi|55379660|ref|YP_137510.1| - 0.0029 18.1 22.2 0.36 11.4 11.3 3.2 2 1 1 3 3 3 2 Apg6 coiled-coil region DUF3535 PF12054.8 gi|55379660|ref|YP_137510.1| - 0.007 15.7 4.3 0.0092 15.3 4.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3535) ZapB PF06005.12 gi|55379660|ref|YP_137510.1| - 0.0091 16.4 2.9 0.0091 16.4 2.9 3.8 2 2 1 3 3 3 1 Cell division protein ZapB Filament PF00038.21 gi|55379660|ref|YP_137510.1| - 0.034 13.8 22.2 2 7.9 15.8 2.9 1 1 0 1 1 1 0 Intermediate filament protein FTA4 PF13093.6 gi|55379660|ref|YP_137510.1| - 0.04 13.8 15.9 0.25 11.2 7.4 2.7 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF3450 PF11932.8 gi|55379660|ref|YP_137510.1| - 0.045 13.1 20.5 0.77 9.0 10.4 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4407 PF14362.6 gi|55379660|ref|YP_137510.1| - 0.05 12.9 23.3 0.11 11.8 11.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DivIC PF04977.15 gi|55379660|ref|YP_137510.1| - 0.051 13.4 20.4 0.58 10.0 1.2 4.4 2 1 0 3 3 3 0 Septum formation initiator TMPIT PF07851.13 gi|55379660|ref|YP_137510.1| - 0.1 11.9 9.6 0.044 13.0 2.0 2.1 1 1 1 2 2 2 0 TMPIT-like protein DUF1664 PF07889.12 gi|55379660|ref|YP_137510.1| - 0.1 12.7 9.1 0.12 12.4 1.6 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Prominin PF05478.11 gi|55379660|ref|YP_137510.1| - 0.13 10.2 4.6 0.16 9.9 4.6 1.1 1 0 0 1 1 1 0 Prominin DUF4615 PF15393.6 gi|55379660|ref|YP_137510.1| - 0.13 12.8 5.0 0.062 13.9 2.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4615) Snapin_Pallidin PF14712.6 gi|55379660|ref|YP_137510.1| - 0.15 12.5 8.6 0.078 13.4 1.9 3.2 2 1 1 3 3 3 0 Snapin/Pallidin Spc7 PF08317.11 gi|55379660|ref|YP_137510.1| - 0.16 10.8 21.3 0.015 14.2 11.2 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein Snf7 PF03357.21 gi|55379660|ref|YP_137510.1| - 0.19 11.3 21.5 14 5.2 21.5 2.7 1 1 0 1 1 1 0 Snf7 DUF4391 PF14335.6 gi|55379660|ref|YP_137510.1| - 0.19 11.4 6.7 0.84 9.3 0.2 2.8 2 2 1 3 3 3 0 Domain of unknown function (DUF4391) DUF4665 PF15679.5 gi|55379660|ref|YP_137510.1| - 0.38 11.4 3.7 0.95 10.1 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4665) FapA PF03961.13 gi|55379660|ref|YP_137510.1| - 0.54 8.8 11.6 0.64 8.6 6.5 2.3 1 1 1 2 2 2 0 Flagellar Assembly Protein A TetR_C_33 PF13305.6 gi|55379660|ref|YP_137510.1| - 0.56 11.0 4.5 0.7 10.7 0.9 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain LPP PF04728.13 gi|55379660|ref|YP_137510.1| - 1.3 9.4 8.1 9.9 6.6 1.9 4.2 2 2 1 3 3 3 0 Lipoprotein leucine-zipper Seryl_tRNA_N PF02403.22 gi|55379660|ref|YP_137510.1| - 1.5 9.1 13.7 0.49 10.6 4.2 3.5 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF4349 PF14257.6 gi|55379660|ref|YP_137510.1| - 1.7 8.0 29.1 0.19 11.2 1.3 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Herpes_UL6 PF01763.16 gi|55379660|ref|YP_137510.1| - 2.3 6.6 8.2 3 6.3 8.2 1.4 1 1 0 1 1 1 0 Herpesvirus UL6 like YlqD PF11068.8 gi|55379660|ref|YP_137510.1| - 2.3 8.6 15.2 8.2 6.8 3.6 2.6 1 1 1 2 2 2 0 YlqD protein Phage_GP20 PF06810.11 gi|55379660|ref|YP_137510.1| - 2.3 8.0 14.9 0.051 13.4 2.6 3.0 1 1 2 3 3 3 0 Phage minor structural protein GP20 DUF5082 PF16888.5 gi|55379660|ref|YP_137510.1| - 3.1 8.1 13.7 0.31 11.3 4.6 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) PolyA_pol PF01743.20 gi|55379660|ref|YP_137510.1| - 4.5 7.7 12.0 0.95 9.9 3.2 3.1 1 1 2 3 3 3 0 Poly A polymerase head domain DHHA1 PF02272.19 gi|55379663|ref|YP_137513.1| - 4.8e-20 72.4 0.4 9.2e-20 71.5 0.4 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|55379663|ref|YP_137513.1| - 0.0062 16.8 0.3 0.011 16.0 0.3 1.4 1 0 0 1 1 1 1 DHH family Peptidase_C15 PF01470.17 gi|55379663|ref|YP_137513.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Pyroglutamyl peptidase HTH_43 PF09904.9 gi|55379664|ref|YP_137514.1| - 0.021 14.7 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2892 PF11127.8 gi|55379664|ref|YP_137514.1| - 0.1 12.7 1.4 0.13 12.3 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) ABC_transp_aux PF09822.9 gi|55379666|ref|YP_137516.1| - 9.3e-07 28.6 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|55379666|ref|YP_137516.1| - 0.005 17.3 1.6 0.0082 16.6 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.18 gi|55379667|ref|YP_137517.1| - 1.6e-18 67.1 1.6 4e-11 43.1 0.3 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|55379667|ref|YP_137517.1| - 0.00014 21.9 0.1 0.00058 19.8 0.1 1.9 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|55379667|ref|YP_137517.1| - 0.00097 18.2 0.0 0.0014 17.7 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Chlor_dismutase PF06778.12 gi|161723231|ref|YP_137518.2| - 1.1e-65 220.8 0.2 2.1e-65 219.9 0.2 1.5 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|161723231|ref|YP_137518.2| - 9.4e-09 35.3 0.1 9.4e-09 35.3 0.1 3.1 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase DAPDH_C PF16654.5 gi|161723231|ref|YP_137518.2| - 0.024 14.5 0.4 1.6 8.6 0.1 2.3 2 0 0 2 2 2 0 Diaminopimelic acid dehydrogenase C-terminal domain BKACE PF05853.12 gi|161723231|ref|YP_137518.2| - 3 7.1 6.6 6.8 5.9 6.6 1.5 1 0 0 1 1 1 0 beta-keto acid cleavage enzyme Methyltransf_25 PF13649.6 gi|55379669|ref|YP_137519.1| - 1.7e-21 76.7 0.1 4.6e-21 75.3 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379669|ref|YP_137519.1| - 2.6e-19 69.5 0.0 3.9e-19 69.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|55379669|ref|YP_137519.1| - 2.5e-18 66.5 0.1 4.2e-18 65.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55379669|ref|YP_137519.1| - 3.2e-14 53.1 0.0 4.7e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|55379669|ref|YP_137519.1| - 8.1e-14 52.2 0.1 2.3e-13 50.7 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain CMAS PF02353.20 gi|55379669|ref|YP_137519.1| - 5.8e-09 35.6 0.0 8e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|55379669|ref|YP_137519.1| - 1.1e-08 35.1 0.0 1.5e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|55379669|ref|YP_137519.1| - 3.8e-08 33.1 0.0 5.5e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|55379669|ref|YP_137519.1| - 1.8e-06 28.1 0.0 2.7e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|55379669|ref|YP_137519.1| - 7.9e-05 22.4 0.0 0.00064 19.5 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|55379669|ref|YP_137519.1| - 0.00016 21.4 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.18 gi|55379669|ref|YP_137519.1| - 0.00023 20.6 0.0 0.00033 20.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|55379669|ref|YP_137519.1| - 0.00038 19.6 0.0 0.00052 19.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|55379669|ref|YP_137519.1| - 0.00085 19.0 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|55379669|ref|YP_137519.1| - 0.0013 17.7 0.0 0.002 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) FtsJ PF01728.19 gi|55379669|ref|YP_137519.1| - 0.0069 16.5 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.13 gi|55379669|ref|YP_137519.1| - 0.0072 15.7 0.4 0.0094 15.4 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CheR PF01739.18 gi|55379669|ref|YP_137519.1| - 0.0078 15.7 0.0 0.39 10.2 0.0 2.3 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain TehB PF03848.14 gi|55379669|ref|YP_137519.1| - 0.02 14.3 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_4 PF02390.17 gi|55379669|ref|YP_137519.1| - 0.022 14.2 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltr_RsmB-F PF01189.17 gi|55379669|ref|YP_137519.1| - 0.059 13.0 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F DREV PF05219.12 gi|55379669|ref|YP_137519.1| - 0.14 11.3 0.0 0.19 10.8 0.0 1.1 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_18 PF12847.7 gi|55379669|ref|YP_137519.1| - 0.21 11.5 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NifU_N PF01592.16 gi|55379670|ref|YP_137520.1| - 1.3e-28 99.7 0.1 1.6e-28 99.4 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain Cupin_2 PF07883.11 gi|55379671|ref|YP_137521.1| - 2.9e-08 33.3 0.1 5e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 Cupin domain PCO_ADO PF07847.12 gi|55379671|ref|YP_137521.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 2 0 0 2 2 2 0 PCO_ADO Aminotran_5 PF00266.19 gi|55379672|ref|YP_137522.1| - 9.9e-145 482.1 0.1 1.1e-144 482.0 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|55379672|ref|YP_137522.1| - 7.1e-10 38.7 0.7 1.3e-09 37.9 0.5 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|55379672|ref|YP_137522.1| - 8.8e-09 35.1 0.1 1.2e-08 34.6 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|55379672|ref|YP_137522.1| - 2.6e-05 23.1 0.1 0.00015 20.6 0.1 1.9 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|55379672|ref|YP_137522.1| - 0.0012 17.9 0.1 0.0028 16.7 0.1 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|55379672|ref|YP_137522.1| - 0.012 14.1 0.1 0.024 13.2 0.1 1.4 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme YdjM PF04307.14 gi|55379673|ref|YP_137523.1| - 0.16 11.2 9.5 2.9 7.1 9.5 2.1 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase DUF424 PF04242.13 gi|55379674|ref|YP_137524.1| - 7.1e-31 106.3 0.0 7.8e-31 106.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.28 gi|55379675|ref|YP_137525.1| - 8.8e-23 79.1 6.4 5.7e-06 25.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|55379675|ref|YP_137525.1| - 2.7e-20 70.8 13.8 3.1e-05 23.8 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|55379675|ref|YP_137525.1| - 4.9e-17 62.3 18.0 3.7e-09 37.1 2.0 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|55379675|ref|YP_137525.1| - 3.7e-16 57.9 2.5 0.00039 20.4 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|55379675|ref|YP_137525.1| - 6.6e-14 52.0 15.0 9.3e-10 38.7 3.9 3.7 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|55379675|ref|YP_137525.1| - 2.5e-11 43.1 3.0 0.0029 17.3 0.0 4.5 1 1 3 4 4 4 2 TPR repeat TPR_14 PF13428.6 gi|55379675|ref|YP_137525.1| - 9.9e-11 41.5 20.3 0.00097 19.8 0.1 5.2 1 1 4 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|55379675|ref|YP_137525.1| - 3e-10 39.8 0.3 0.00082 19.6 0.0 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|55379675|ref|YP_137525.1| - 3.6e-09 36.6 8.1 0.00041 20.4 0.5 3.6 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|55379675|ref|YP_137525.1| - 1.2e-08 34.3 13.0 0.0096 15.9 0.2 4.6 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|55379675|ref|YP_137525.1| - 6.9e-08 32.9 11.9 0.00092 19.7 0.0 3.6 1 1 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|55379675|ref|YP_137525.1| - 2.4e-06 27.8 5.9 3.6 8.4 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|55379675|ref|YP_137525.1| - 7.8e-05 22.4 19.1 0.0053 16.6 0.3 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat DUF4192 PF13830.6 gi|55379675|ref|YP_137525.1| - 0.001 19.2 1.7 0.001 19.2 1.7 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4192) TPR_4 PF07721.14 gi|55379675|ref|YP_137525.1| - 0.0015 18.9 0.5 0.0015 18.9 0.5 5.1 6 0 0 6 6 5 2 Tetratricopeptide repeat YfiO PF13525.6 gi|55379675|ref|YP_137525.1| - 0.035 13.8 0.5 0.069 12.9 0.3 1.5 1 1 0 1 1 1 0 Outer membrane lipoprotein ANAPC5 PF12862.7 gi|55379675|ref|YP_137525.1| - 0.048 13.7 1.6 21 5.3 1.2 3.1 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 DUF4810 PF16068.5 gi|55379675|ref|YP_137525.1| - 0.071 13.7 0.0 1.5 9.5 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4810) DUF3856 PF12968.7 gi|55379675|ref|YP_137525.1| - 0.09 12.8 9.7 1.5 8.9 1.7 3.6 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|55379675|ref|YP_137525.1| - 0.42 11.0 8.5 2.1 8.7 0.2 3.0 2 2 1 3 3 3 0 Tetratricopeptide repeat SMBP PF16785.5 gi|55379675|ref|YP_137525.1| - 3.4 7.9 8.8 2.6 8.3 1.8 2.9 2 1 1 3 3 3 0 Small metal-binding protein LigT_PEase PF02834.16 gi|55379676|ref|YP_137526.1| - 8.2e-20 70.8 0.0 2.4e-11 43.7 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|55379676|ref|YP_137526.1| - 1.4e-16 60.8 0.0 1.6e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|55379676|ref|YP_137526.1| - 2.4e-07 30.9 0.0 2.5e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Zip PF02535.22 gi|55379677|ref|YP_137527.1| - 5.3e-13 48.9 20.8 3.8e-10 39.5 5.5 3.1 3 0 0 3 3 3 3 ZIP Zinc transporter TAT_signal PF10518.9 gi|55379678|ref|YP_137528.1| - 0.14 12.0 1.0 0.21 11.5 1.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_L39 PF00832.20 gi|55379679|ref|YP_137529.1| - 4e-20 71.2 7.4 4.7e-20 70.9 7.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|55379680|ref|YP_137530.1| - 8.9e-10 38.7 0.2 1.1e-09 38.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Tom37_C PF11801.8 gi|55379680|ref|YP_137530.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Tom37 C-terminal domain eIF-6 PF01912.18 gi|297616205|ref|YP_003710346.1| - 1e-73 246.9 0.0 1.2e-73 246.8 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family DUF1272 PF06906.11 gi|55379682|ref|YP_137532.1| - 0.00096 19.2 1.0 0.0011 19.0 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) PhnA_Zn_Ribbon PF08274.12 gi|55379682|ref|YP_137532.1| - 0.0018 18.2 1.3 0.24 11.4 0.1 2.1 2 0 0 2 2 2 2 PhnA Zinc-Ribbon RNA_POL_M_15KD PF02150.16 gi|55379682|ref|YP_137532.1| - 0.0038 17.1 1.3 0.33 10.9 0.1 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zf-RING_10 PF16685.5 gi|55379682|ref|YP_137532.1| - 0.0049 17.0 0.2 0.0051 16.9 0.2 1.0 1 0 0 1 1 1 1 zinc RING finger of MSL2 A2L_zn_ribbon PF08792.10 gi|55379682|ref|YP_137532.1| - 0.0091 15.7 1.0 2.3 8.1 0.1 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain zf_Rg PF17915.1 gi|55379682|ref|YP_137532.1| - 0.0093 15.3 0.8 0.033 13.6 0.1 1.9 2 0 0 2 2 2 1 Reverse gyrase zinc finger HypA PF01155.19 gi|55379682|ref|YP_137532.1| - 0.018 15.1 0.3 0.018 15.1 0.3 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C4_Topoisom PF01396.19 gi|55379682|ref|YP_137532.1| - 0.018 14.8 0.3 0.018 14.8 0.3 1.9 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|55379682|ref|YP_137532.1| - 0.02 14.8 1.4 3.7 7.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.8 gi|55379682|ref|YP_137532.1| - 0.022 14.6 1.8 0.038 13.9 1.8 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|55379682|ref|YP_137532.1| - 0.03 14.1 1.8 0.043 13.5 1.8 1.2 1 0 0 1 1 1 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|55379682|ref|YP_137532.1| - 0.035 13.8 1.4 0.14 11.9 1.4 1.8 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|55379682|ref|YP_137532.1| - 0.057 12.9 2.1 0.76 9.3 0.4 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|55379682|ref|YP_137532.1| - 0.13 11.0 0.7 0.14 10.9 0.7 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Anti-TRAP PF15777.5 gi|55379682|ref|YP_137532.1| - 0.17 11.8 3.7 4.8 7.2 0.7 2.0 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_9 PF14369.6 gi|55379682|ref|YP_137532.1| - 0.27 11.5 4.9 10 6.5 4.9 2.1 1 1 0 1 1 1 0 zinc-ribbon Prefoldin PF02996.17 gi|55379683|ref|YP_137533.1| - 6e-24 84.3 7.1 6e-24 84.3 7.1 1.5 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|55379683|ref|YP_137533.1| - 2e-08 34.1 25.5 1.2e-05 25.2 9.8 2.6 1 1 2 3 3 3 2 Prefoldin subunit APG6_N PF17675.1 gi|55379683|ref|YP_137533.1| - 2.5e-05 24.8 26.5 0.0013 19.3 12.3 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region DUF5082 PF16888.5 gi|55379683|ref|YP_137533.1| - 7.4e-05 23.0 20.2 0.00054 20.2 2.8 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF5082) GAS PF13851.6 gi|55379683|ref|YP_137533.1| - 0.00058 19.3 15.4 0.036 13.4 0.6 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Uds1 PF15456.6 gi|55379683|ref|YP_137533.1| - 0.0012 19.0 5.9 0.0021 18.2 5.9 1.4 1 1 0 1 1 1 1 Up-regulated During Septation DivIC PF04977.15 gi|55379683|ref|YP_137533.1| - 0.0014 18.3 0.6 0.0014 18.3 0.6 3.1 2 1 1 3 3 2 1 Septum formation initiator FliD_C PF07195.12 gi|55379683|ref|YP_137533.1| - 0.004 16.6 9.2 0.008 15.6 3.9 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Syntaxin PF00804.25 gi|55379683|ref|YP_137533.1| - 0.0046 16.7 13.1 0.083 12.6 1.4 2.1 2 0 0 2 2 2 2 Syntaxin DUF4795 PF16043.5 gi|55379683|ref|YP_137533.1| - 0.0074 15.9 15.0 0.14 11.7 0.9 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4795) Sipho_Gp157 PF05565.11 gi|55379683|ref|YP_137533.1| - 0.0089 16.1 2.0 0.0089 16.1 2.0 2.2 2 0 0 2 2 2 1 Siphovirus Gp157 BLOC1_2 PF10046.9 gi|55379683|ref|YP_137533.1| - 0.01 16.1 2.3 0.01 16.1 2.3 2.6 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4618 PF15397.6 gi|55379683|ref|YP_137533.1| - 0.013 14.9 23.2 0.13 11.7 2.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Laminin_II PF06009.12 gi|55379683|ref|YP_137533.1| - 0.014 15.4 9.0 0.66 10.0 0.6 2.2 2 0 0 2 2 2 0 Laminin Domain II ZapB PF06005.12 gi|55379683|ref|YP_137533.1| - 0.014 15.8 30.3 0.23 11.9 18.3 2.4 2 0 0 2 2 2 0 Cell division protein ZapB DUF4988 PF16378.5 gi|55379683|ref|YP_137533.1| - 0.02 14.6 4.5 0.21 11.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function GPS2_interact PF15784.5 gi|55379683|ref|YP_137533.1| - 0.024 15.1 18.8 0.12 12.9 7.0 2.1 2 0 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain XhlA PF10779.9 gi|55379683|ref|YP_137533.1| - 0.027 14.7 17.0 0.098 12.9 4.0 2.4 2 0 0 2 2 2 0 Haemolysin XhlA YlqD PF11068.8 gi|55379683|ref|YP_137533.1| - 0.028 14.8 25.0 0.47 10.8 2.9 2.3 2 0 0 2 2 2 0 YlqD protein CENP-F_leu_zip PF10473.9 gi|55379683|ref|YP_137533.1| - 0.029 14.4 24.0 0.13 12.3 1.9 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|55379683|ref|YP_137533.1| - 0.031 14.4 16.0 0.12 12.4 7.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|55379683|ref|YP_137533.1| - 0.031 14.7 19.2 0.62 10.6 5.2 2.8 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.22 gi|55379683|ref|YP_137533.1| - 0.034 14.4 14.2 0.67 10.2 4.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Jnk-SapK_ap_N PF09744.9 gi|55379683|ref|YP_137533.1| - 0.035 14.3 20.8 0.23 11.6 11.3 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF932 PF06067.11 gi|55379683|ref|YP_137533.1| - 0.044 13.6 8.0 0.24 11.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF932) Spc7 PF08317.11 gi|55379683|ref|YP_137533.1| - 0.045 12.6 23.6 0.11 11.3 2.8 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein MscS_porin PF12795.7 gi|55379683|ref|YP_137533.1| - 0.05 13.1 0.9 0.05 13.1 0.9 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain HemX PF04375.14 gi|55379683|ref|YP_137533.1| - 0.063 12.6 17.5 0.46 9.7 0.2 2.0 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase SlyX PF04102.12 gi|55379683|ref|YP_137533.1| - 0.063 13.9 27.5 4.4 8.0 17.2 3.1 3 0 0 3 3 3 0 SlyX DUF3450 PF11932.8 gi|55379683|ref|YP_137533.1| - 0.069 12.4 22.3 0.39 10.0 11.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) UPF0242 PF06785.11 gi|55379683|ref|YP_137533.1| - 0.081 13.0 20.9 0.32 11.1 10.7 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Phage_GP20 PF06810.11 gi|55379683|ref|YP_137533.1| - 0.082 12.7 19.1 0.14 11.9 2.2 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 DUF812 PF05667.11 gi|55379683|ref|YP_137533.1| - 0.087 11.7 22.6 0.41 9.5 2.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Spc24 PF08286.11 gi|55379683|ref|YP_137533.1| - 0.09 13.0 19.8 0.25 11.6 0.3 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 COG2 PF06148.11 gi|55379683|ref|YP_137533.1| - 0.095 12.8 11.2 0.52 10.4 0.9 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Plk4_PB2 PF18409.1 gi|55379683|ref|YP_137533.1| - 0.095 13.4 4.1 9.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 Tektin PF03148.14 gi|55379683|ref|YP_137533.1| - 0.1 11.3 19.0 0.18 10.5 2.4 2.2 2 0 0 2 2 2 0 Tektin family Nsp1_C PF05064.13 gi|55379683|ref|YP_137533.1| - 0.11 12.3 22.0 0.06 13.2 2.4 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Sec34 PF04136.15 gi|55379683|ref|YP_137533.1| - 0.11 12.3 16.0 0.37 10.7 0.7 2.1 2 0 0 2 2 2 0 Sec34-like family Wtap PF17098.5 gi|55379683|ref|YP_137533.1| - 0.12 12.3 16.1 0.63 10.0 8.0 2.3 2 0 0 2 2 2 0 WTAP/Mum2p family Ax_dynein_light PF10211.9 gi|55379683|ref|YP_137533.1| - 0.12 12.3 25.1 0.73 9.8 14.9 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Flagellar_rod PF05149.12 gi|55379683|ref|YP_137533.1| - 0.19 11.2 18.3 0.063 12.7 9.0 2.1 2 0 0 2 2 2 0 Paraflagellar rod protein FlaC_arch PF05377.11 gi|55379683|ref|YP_137533.1| - 0.19 12.1 21.3 0.33 11.4 5.1 3.4 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.7 gi|55379683|ref|YP_137533.1| - 0.19 11.9 28.9 0.1 12.7 3.9 2.1 2 0 0 2 2 2 0 Tropomyosin like BshC PF10079.9 gi|55379683|ref|YP_137533.1| - 0.19 10.4 12.2 0.44 9.2 5.8 2.0 2 0 0 2 2 2 0 Bacillithiol biosynthesis BshC DUF2570 PF10828.8 gi|55379683|ref|YP_137533.1| - 0.22 11.4 21.1 0.35 10.7 11.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) CLZ PF16526.5 gi|55379683|ref|YP_137533.1| - 0.22 11.9 17.1 2.5 8.5 0.5 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Phage_GPO PF05929.11 gi|55379683|ref|YP_137533.1| - 0.23 11.1 11.3 3.2 7.3 0.1 2.1 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase YabA PF06156.13 gi|55379683|ref|YP_137533.1| - 0.27 11.9 19.8 0.72 10.5 1.1 2.1 2 0 0 2 2 2 0 Initiation control protein YabA bZIP_1 PF00170.21 gi|55379683|ref|YP_137533.1| - 0.31 11.2 14.9 0.25 11.4 1.2 2.6 2 1 0 2 2 2 0 bZIP transcription factor Golgin_A5 PF09787.9 gi|55379683|ref|YP_137533.1| - 0.33 10.4 22.9 1.4 8.4 13.6 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 DUF4446 PF14584.6 gi|55379683|ref|YP_137533.1| - 0.35 10.9 10.6 2.2 8.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF2968 PF11180.8 gi|55379683|ref|YP_137533.1| - 0.39 10.3 21.6 0.89 9.2 10.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Prominin PF05478.11 gi|55379683|ref|YP_137533.1| - 0.4 8.6 7.7 3 5.7 0.1 2.0 2 0 0 2 2 2 0 Prominin Sec66 PF09802.9 gi|55379683|ref|YP_137533.1| - 0.45 10.1 10.0 0.37 10.4 3.6 2.1 2 0 0 2 2 2 0 Preprotein translocase subunit Sec66 DUF2203 PF09969.9 gi|55379683|ref|YP_137533.1| - 0.45 11.2 11.1 3.5 8.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF3086 PF11285.8 gi|55379683|ref|YP_137533.1| - 0.48 9.5 11.0 2.8 6.9 5.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF3251 PF11622.8 gi|55379683|ref|YP_137533.1| - 0.52 9.9 10.0 0.34 10.6 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) FapA PF03961.13 gi|55379683|ref|YP_137533.1| - 0.52 8.8 16.0 1.4 7.4 1.8 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DivIVA PF05103.13 gi|55379683|ref|YP_137533.1| - 0.53 10.4 18.3 0.8 9.8 4.7 2.3 2 0 0 2 2 2 0 DivIVA protein DUF1664 PF07889.12 gi|55379683|ref|YP_137533.1| - 0.54 10.3 17.8 0.11 12.6 1.8 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) Nup88 PF10168.9 gi|55379683|ref|YP_137533.1| - 0.57 7.9 14.1 0.59 7.9 1.2 2.0 2 0 0 2 2 2 0 Nuclear pore component EMP24_GP25L PF01105.24 gi|55379683|ref|YP_137533.1| - 0.61 10.0 14.7 2.4 8.1 2.0 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD LRRFIP PF09738.9 gi|55379683|ref|YP_137533.1| - 0.62 9.5 19.4 2.5 7.5 0.9 2.0 1 1 0 2 2 2 0 LRRFIP family Baculo_PEP_C PF04513.12 gi|55379683|ref|YP_137533.1| - 0.65 10.0 11.3 0.61 10.1 0.8 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Hemerythrin PF01814.23 gi|55379683|ref|YP_137533.1| - 0.89 10.2 8.0 0.4 11.3 1.7 2.3 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain MctB PF11382.8 gi|55379683|ref|YP_137533.1| - 1.1 8.9 10.8 8.7 5.9 0.1 2.2 2 1 0 2 2 2 0 Copper transport outer membrane protein, MctB DELLA PF12041.8 gi|55379683|ref|YP_137533.1| - 1.5 8.7 11.2 0.26 11.2 0.6 2.5 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal ERM PF00769.19 gi|55379683|ref|YP_137533.1| - 1.7 8.4 30.2 0.45 10.3 2.4 2.0 2 0 0 2 2 2 0 Ezrin/radixin/moesin family AAA_13 PF13166.6 gi|55379683|ref|YP_137533.1| - 1.7 7.2 19.4 12 4.3 19.4 1.8 1 1 0 1 1 1 0 AAA domain OmpH PF03938.14 gi|55379683|ref|YP_137533.1| - 1.8 8.9 33.7 3.2 8.1 3.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) ABC_tran_CTD PF16326.5 gi|55379683|ref|YP_137533.1| - 1.9 8.8 33.1 6.7 7.0 14.7 2.9 2 1 0 2 2 2 0 ABC transporter C-terminal domain bZIP_Maf PF03131.17 gi|55379683|ref|YP_137533.1| - 2.1 9.0 19.4 2.4 8.8 1.9 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF4337 PF14235.6 gi|55379683|ref|YP_137533.1| - 2.1 8.5 17.7 0.95 9.6 9.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF948 PF06103.11 gi|55379683|ref|YP_137533.1| - 2.3 8.5 11.6 0.39 11.0 0.7 2.5 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) Cep57_CLD_2 PF14197.6 gi|55379683|ref|YP_137533.1| - 2.3 8.4 16.7 2.8 8.1 1.0 2.3 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 LMBR1 PF04791.16 gi|55379683|ref|YP_137533.1| - 2.4 7.0 6.8 2.9 6.7 6.8 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4407 PF14362.6 gi|55379683|ref|YP_137533.1| - 2.4 7.4 16.6 5.7 6.2 16.6 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Fzo_mitofusin PF04799.13 gi|55379683|ref|YP_137533.1| - 2.5 7.7 13.5 0.91 9.1 0.8 2.2 2 0 0 2 2 2 0 fzo-like conserved region Med4 PF10018.9 gi|55379683|ref|YP_137533.1| - 2.7 7.6 18.4 0.45 10.2 1.6 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Helo_like_N PF17111.5 gi|55379683|ref|YP_137533.1| - 2.8 7.2 13.7 2.4 7.5 6.3 2.1 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins AAA_lid_9 PF17871.1 gi|55379683|ref|YP_137533.1| - 2.8 7.9 17.4 4.9 7.1 8.0 2.3 2 0 0 2 2 2 0 AAA lid domain RmuC PF02646.16 gi|55379683|ref|YP_137533.1| - 3.1 6.9 18.8 2.4 7.2 1.1 2.1 2 0 0 2 2 2 0 RmuC family DUF724 PF05266.14 gi|55379683|ref|YP_137533.1| - 3.1 7.6 22.3 3.8 7.3 1.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Osmo_CC PF08946.10 gi|55379683|ref|YP_137533.1| - 3.6 7.9 35.1 0.11 12.8 8.8 4.8 3 2 1 4 4 3 0 Osmosensory transporter coiled coil TMPIT PF07851.13 gi|55379683|ref|YP_137533.1| - 3.6 6.7 13.3 3.3 6.9 0.1 2.0 2 0 0 2 2 2 0 TMPIT-like protein DUF2730 PF10805.8 gi|55379683|ref|YP_137533.1| - 3.7 7.7 12.7 8.8 6.5 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DHR10 PF18595.1 gi|55379683|ref|YP_137533.1| - 3.9 7.6 30.1 1.4 9.0 4.7 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DASH_Dam1 PF08653.10 gi|55379683|ref|YP_137533.1| - 5.8 6.8 10.4 21 5.0 0.3 3.4 2 2 1 3 3 3 0 DASH complex subunit Dam1 zf-CpG_bind_C PF12269.8 gi|55379683|ref|YP_137533.1| - 6.3 6.5 13.4 3.5 7.3 0.5 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain BRI3BP PF14965.6 gi|55379683|ref|YP_137533.1| - 7.2 6.1 5.2 47 3.4 0.1 2.7 2 1 1 3 3 3 0 Negative regulator of p53/TP53 Nup54 PF13874.6 gi|55379683|ref|YP_137533.1| - 7.4 6.7 22.2 7 6.7 2.3 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Allexi_40kDa PF05549.11 gi|55379683|ref|YP_137533.1| - 7.5 6.0 9.7 5.8 6.3 3.1 2.1 1 1 0 2 2 2 0 Allexivirus 40kDa protein Fib_alpha PF08702.10 gi|55379683|ref|YP_137533.1| - 8.2 6.6 18.4 3 8.0 2.1 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF5320 PF17253.2 gi|55379683|ref|YP_137533.1| - 9.1 7.4 15.5 4.2 8.5 0.2 3.1 2 1 0 2 2 1 0 Family of unknown function (DUF5320) LCIB_C_CA PF18599.1 gi|55379683|ref|YP_137533.1| - 9.2 5.5 11.1 1.6 7.9 5.4 1.9 2 0 0 2 2 2 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases Cauli_DNA-bind PF03310.13 gi|55379683|ref|YP_137533.1| - 9.4 6.3 10.2 3.7 7.7 2.1 2.3 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein SRP54 PF00448.22 gi|55379684|ref|YP_137534.1| - 2.1e-68 229.8 0.2 2.9e-68 229.4 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|55379684|ref|YP_137534.1| - 1.1e-10 41.5 0.9 1.1e-10 41.5 0.9 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|55379684|ref|YP_137534.1| - 2e-05 24.0 0.1 3.2e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|55379684|ref|YP_137534.1| - 2.3e-05 24.8 0.1 6.9e-05 23.3 0.1 1.9 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|55379684|ref|YP_137534.1| - 3.2e-05 23.9 0.0 6.7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.6 gi|55379684|ref|YP_137534.1| - 0.00017 21.4 0.6 0.00041 20.1 0.6 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|55379684|ref|YP_137534.1| - 0.00032 21.0 0.5 0.0024 18.1 0.2 2.6 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|55379684|ref|YP_137534.1| - 0.00036 20.6 0.0 0.0008 19.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Thymidylate_kin PF02223.17 gi|55379684|ref|YP_137534.1| - 0.00081 19.1 0.1 0.012 15.3 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase KTI12 PF08433.10 gi|55379684|ref|YP_137534.1| - 0.0018 17.8 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|55379684|ref|YP_137534.1| - 0.0022 18.4 0.0 0.0022 18.4 0.0 2.8 2 2 0 2 2 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|55379684|ref|YP_137534.1| - 0.0038 17.4 0.1 0.025 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|55379684|ref|YP_137534.1| - 0.0098 15.5 1.6 0.013 15.1 0.1 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|55379684|ref|YP_137534.1| - 0.0099 16.2 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55379684|ref|YP_137534.1| - 0.019 14.7 0.2 0.055 13.2 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|55379684|ref|YP_137534.1| - 0.024 14.5 0.1 0.045 13.7 0.1 1.4 1 0 0 1 1 1 0 NTPase MeaB PF03308.16 gi|55379684|ref|YP_137534.1| - 0.027 13.4 0.0 0.047 12.7 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|55379684|ref|YP_137534.1| - 0.041 13.9 0.1 0.13 12.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|55379684|ref|YP_137534.1| - 0.044 14.2 0.1 0.19 12.2 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|55379684|ref|YP_137534.1| - 0.051 13.3 0.2 0.1 12.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|55379684|ref|YP_137534.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein 6PF2K PF01591.18 gi|55379684|ref|YP_137534.1| - 0.089 12.1 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase PPK2 PF03976.14 gi|55379684|ref|YP_137534.1| - 0.12 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.6 gi|55379684|ref|YP_137534.1| - 0.13 12.8 0.1 0.45 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_31 PF13614.6 gi|55379684|ref|YP_137534.1| - 0.17 11.8 0.5 0.67 9.8 0.1 2.1 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 gi|55379684|ref|YP_137534.1| - 0.2 11.6 0.2 0.67 9.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain PRCC PF10253.9 gi|55379684|ref|YP_137534.1| - 2.3 9.0 12.0 4.6 8.0 12.0 1.5 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting TAT_signal PF10518.9 gi|55379685|ref|YP_137535.1| - 0.00024 20.8 0.1 0.00057 19.6 0.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Aldolase PF01081.19 gi|55379686|ref|YP_137536.1| - 2.2e-40 138.2 2.7 2.7e-40 137.9 2.7 1.1 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|55379686|ref|YP_137536.1| - 0.00035 19.9 4.9 0.34 10.1 0.1 3.1 2 1 1 3 3 3 2 Dihydroorotate dehydrogenase PEP_hydrolase PF09370.10 gi|55379686|ref|YP_137536.1| - 0.014 14.6 1.8 0.61 9.2 0.1 2.1 1 1 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like IMPDH PF00478.25 gi|55379686|ref|YP_137536.1| - 0.028 13.4 1.5 0.04 12.9 0.0 2.0 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain SspK PF08176.12 gi|55379686|ref|YP_137536.1| - 0.064 13.5 1.6 0.098 12.9 0.2 2.0 2 0 0 2 2 2 0 Small acid-soluble spore protein K family Mem_trans PF03547.18 gi|55379687|ref|YP_137537.1| - 3.5e-20 71.8 15.8 2.7e-13 49.1 0.8 2.0 1 1 1 2 2 2 2 Membrane transport protein SBF PF01758.16 gi|55379687|ref|YP_137537.1| - 0.018 14.8 6.9 0.018 14.8 6.9 2.6 2 1 0 2 2 2 0 Sodium Bile acid symporter family MVL PF12151.8 gi|55379688|ref|YP_137538.1| - 0.059 13.2 0.2 0.24 11.3 0.1 2.0 2 0 0 2 2 2 0 Mannan-binding protein UCR_Fe-S_N PF10399.9 gi|55379688|ref|YP_137538.1| - 0.065 12.6 2.6 0.12 11.7 2.6 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|55379688|ref|YP_137538.1| - 0.5 10.3 7.3 1.8 8.5 7.3 1.9 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SRP54 PF00448.22 gi|55379689|ref|YP_137539.1| - 7.8e-60 201.9 0.1 1.2e-59 201.2 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|55379689|ref|YP_137539.1| - 1.7e-29 102.4 5.2 1.7e-29 102.4 5.2 3.2 4 0 0 4 4 4 1 Signal peptide binding domain SRP54_N PF02881.19 gi|55379689|ref|YP_137539.1| - 6.5e-17 61.5 2.4 1.6e-16 60.2 0.0 2.8 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|55379689|ref|YP_137539.1| - 2.5e-05 24.3 0.0 7e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.19 gi|55379689|ref|YP_137539.1| - 0.0059 16.2 0.4 0.15 11.7 0.4 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|55379689|ref|YP_137539.1| - 0.013 14.8 0.1 1.7 7.9 0.0 2.6 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.6 gi|55379689|ref|YP_137539.1| - 0.013 15.8 0.0 0.069 13.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|55379689|ref|YP_137539.1| - 0.017 14.6 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain ArsA_ATPase PF02374.15 gi|55379689|ref|YP_137539.1| - 0.017 14.3 8.3 0.11 11.6 0.0 3.2 2 1 1 3 3 3 0 Anion-transporting ATPase CARD PF00619.21 gi|55379689|ref|YP_137539.1| - 0.036 14.1 1.3 0.18 11.8 0.1 2.4 2 0 0 2 2 2 0 Caspase recruitment domain SRPRB PF09439.10 gi|55379689|ref|YP_137539.1| - 0.039 13.4 0.0 6.7 6.1 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_24 PF13479.6 gi|55379689|ref|YP_137539.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|55379689|ref|YP_137539.1| - 0.098 11.5 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain IZUMO PF15005.6 gi|55379689|ref|YP_137539.1| - 0.33 11.5 1.3 11 6.5 0.1 2.9 3 0 0 3 3 3 0 Izumo sperm-egg fusion, Ig domain-associated YppG PF14179.6 gi|55379689|ref|YP_137539.1| - 6.1 7.6 8.8 3.2 8.5 1.5 2.3 2 0 0 2 2 2 0 YppG-like protein DUF2312 PF10073.9 gi|55379689|ref|YP_137539.1| - 6.4 6.5 7.3 13 5.5 0.3 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Usp PF00582.26 gi|55379690|ref|YP_137540.1| - 4.6e-17 62.8 2.8 1.2e-16 61.6 2.8 1.6 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|55379690|ref|YP_137540.1| - 0.0025 17.4 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain HGTP_anticodon PF03129.20 gi|55379690|ref|YP_137540.1| - 0.032 14.4 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 Anticodon binding domain Thioredoxin PF00085.20 gi|55379691|ref|YP_137541.1| - 2.7e-11 43.4 0.0 4.6e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55379691|ref|YP_137541.1| - 0.00026 21.4 0.3 0.0074 16.7 0.3 2.5 1 1 0 1 1 1 1 Thioredoxin-like domain HyaE PF07449.11 gi|55379691|ref|YP_137541.1| - 0.033 14.2 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DUF2397 PF09660.10 gi|55379691|ref|YP_137541.1| - 0.041 12.8 0.2 0.092 11.6 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2397) ABC_tran PF00005.27 gi|55379692|ref|YP_137542.1| - 2.7e-29 102.4 0.0 3.8e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55379692|ref|YP_137542.1| - 3.5e-10 40.2 0.3 0.00014 21.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|55379692|ref|YP_137542.1| - 6.8e-05 23.5 0.0 9.2e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|55379692|ref|YP_137542.1| - 0.00094 18.7 0.1 0.63 9.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|55379692|ref|YP_137542.1| - 0.0014 18.8 0.2 0.012 15.8 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|55379692|ref|YP_137542.1| - 0.017 13.8 0.0 0.092 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|55379692|ref|YP_137542.1| - 0.025 14.3 1.0 0.04 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain DUF155 PF02582.14 gi|55379692|ref|YP_137542.1| - 0.028 14.5 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 AAA_16 PF13191.6 gi|55379692|ref|YP_137542.1| - 0.043 14.2 0.1 0.13 12.7 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|55379692|ref|YP_137542.1| - 0.046 13.5 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF433 PF04255.14 gi|55379692|ref|YP_137542.1| - 0.06 13.2 0.0 0.5 10.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF433) MukB PF04310.12 gi|55379692|ref|YP_137542.1| - 0.16 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal ABC_tran PF00005.27 gi|55379693|ref|YP_137543.1| - 5.8e-28 98.1 0.0 7.5e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|55379693|ref|YP_137543.1| - 5.4e-13 48.5 0.2 1.1e-12 47.6 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|55379693|ref|YP_137543.1| - 3.3e-05 23.8 1.3 0.051 13.4 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|55379693|ref|YP_137543.1| - 0.00035 20.3 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55379693|ref|YP_137543.1| - 0.003 17.9 0.1 0.0054 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|55379693|ref|YP_137543.1| - 0.0057 16.6 0.0 0.0095 15.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|55379693|ref|YP_137543.1| - 0.0071 16.9 0.2 0.0085 16.6 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|55379693|ref|YP_137543.1| - 0.015 15.1 0.0 0.024 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|55379693|ref|YP_137543.1| - 0.018 15.6 0.0 0.038 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|55379693|ref|YP_137543.1| - 0.022 14.8 0.1 0.077 13.1 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|55379693|ref|YP_137543.1| - 0.024 14.9 0.0 0.073 13.4 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|55379693|ref|YP_137543.1| - 0.11 12.0 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 gi|55379693|ref|YP_137543.1| - 0.15 11.7 0.0 0.32 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|55379693|ref|YP_137543.1| - 0.16 11.2 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|55379693|ref|YP_137543.1| - 0.16 12.3 0.0 0.29 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|55379693|ref|YP_137543.1| - 0.18 11.8 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMC_N PF02463.19 gi|55379693|ref|YP_137543.1| - 0.26 10.7 0.7 0.4 10.1 0.7 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.16 gi|55379694|ref|YP_137544.1| - 1.3e-35 122.9 37.5 1.9e-35 122.3 37.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|55379695|ref|YP_137545.1| - 3.1e-24 85.6 15.6 3.9e-24 85.3 15.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|55379696|ref|YP_137546.1| - 6.4e-67 226.6 8.1 8.3e-67 226.3 8.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|55379696|ref|YP_137546.1| - 1.5e-17 63.7 1.8 2.9e-17 62.7 1.8 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|55379696|ref|YP_137546.1| - 1.6e-07 30.8 0.0 2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|55379696|ref|YP_137546.1| - 0.00014 21.6 1.6 0.00034 20.3 1.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_4 PF13407.6 gi|55379696|ref|YP_137546.1| - 0.016 14.8 1.6 2.5 7.6 0.0 2.5 1 1 0 2 2 2 0 Periplasmic binding protein domain MgtE PF01769.16 gi|55379698|ref|YP_137548.1| - 2e-19 70.2 8.3 2e-19 70.2 8.3 1.6 2 0 0 2 2 2 1 Divalent cation transporter DUF2632 PF10943.8 gi|55379698|ref|YP_137548.1| - 0.21 11.2 2.4 0.28 10.8 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2632) MgtE PF01769.16 gi|55379699|ref|YP_137549.1| - 6.9e-22 78.1 13.5 6.9e-22 78.1 13.5 1.5 2 0 0 2 2 2 1 Divalent cation transporter DUF1422 PF07226.11 gi|55379699|ref|YP_137549.1| - 0.5 10.4 5.1 0.26 11.3 2.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1422) LapA_dom PF06305.11 gi|55379699|ref|YP_137549.1| - 0.8 9.6 4.7 1.5 8.7 3.3 2.3 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Acetyltransf_4 PF13420.7 gi|55379701|ref|YP_137551.1| - 2.1e-11 44.2 0.0 2.9e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|55379701|ref|YP_137551.1| - 1.3e-10 41.5 0.0 2.1e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55379701|ref|YP_137551.1| - 1.2e-07 32.0 0.0 2.3e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|55379701|ref|YP_137551.1| - 6.2e-06 26.2 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55379701|ref|YP_137551.1| - 3.3e-05 23.9 0.0 7.8e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|55379701|ref|YP_137551.1| - 0.0031 17.6 0.0 0.0082 16.2 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55379701|ref|YP_137551.1| - 0.0044 17.7 0.1 0.0082 16.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|55379701|ref|YP_137551.1| - 0.069 13.3 0.4 0.3 11.2 0.1 2.2 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain CvfB_WH PF17783.1 gi|55379701|ref|YP_137551.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 CvfB-like winged helix domain CBS PF00571.28 gi|55379702|ref|YP_137552.1| - 3e-27 94.8 7.8 4.7e-14 52.6 0.6 2.9 3 0 0 3 3 3 2 CBS domain MaoC_dehydratas PF01575.19 gi|55379702|ref|YP_137552.1| - 4.9e-20 71.3 0.0 9.4e-20 70.4 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|55379702|ref|YP_137552.1| - 3.4e-05 24.0 0.0 7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase NitrOD1 PF18549.1 gi|55379702|ref|YP_137552.1| - 0.071 13.1 0.0 4.1 7.4 0.0 2.6 2 0 0 2 2 2 0 Nitrosopumilus output domain 1 4HBT_2 PF13279.6 gi|55379702|ref|YP_137552.1| - 0.14 12.6 0.0 0.27 11.7 0.0 1.7 1 1 0 1 1 1 0 Thioesterase-like superfamily LTD PF00932.19 gi|55379703|ref|YP_137553.1| - 2e-22 79.7 4.4 2e-22 79.7 4.4 1.7 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|55379703|ref|YP_137553.1| - 1.1e-17 64.5 0.0 1.9e-17 63.7 0.0 1.4 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Oxidored_molyb PF00174.19 gi|55379704|ref|YP_137554.1| - 6.5e-27 94.2 0.0 1.2e-26 93.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain HAD_2 PF13419.6 gi|55379706|ref|YP_137556.1| - 2.9e-20 73.1 0.0 3.8e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|55379706|ref|YP_137556.1| - 2.3e-11 44.4 0.7 3.5e-11 43.8 0.7 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|55379706|ref|YP_137556.1| - 1.8e-08 34.3 1.0 3e-06 27.2 0.0 2.5 2 1 0 2 2 2 2 HAD-hyrolase-like RNA_binding PF01877.17 gi|55379707|ref|YP_137557.1| - 1.4e-09 38.2 0.1 6.4e-09 36.1 0.1 1.9 1 1 0 1 1 1 1 RNA binding DUF3320 PF11784.8 gi|55379707|ref|YP_137557.1| - 0.015 15.2 0.1 0.029 14.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) GPP34 PF05719.11 gi|55379707|ref|YP_137557.1| - 0.025 14.6 0.1 0.038 14.0 0.1 1.3 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) AAA_17 PF13207.6 gi|55379708|ref|YP_137558.1| - 2.4e-18 66.9 0.1 3.3e-18 66.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|55379708|ref|YP_137558.1| - 2.1e-12 47.7 0.0 2.6e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|55379708|ref|YP_137558.1| - 0.00016 21.9 0.0 0.00024 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|55379708|ref|YP_137558.1| - 0.00023 21.3 0.0 0.00027 21.1 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase PEP-utilizers PF00391.23 gi|55379708|ref|YP_137558.1| - 0.0064 16.2 0.2 0.016 14.9 0.2 1.6 1 1 0 1 1 1 1 PEP-utilising enzyme, mobile domain CoaE PF01121.20 gi|55379708|ref|YP_137558.1| - 0.059 13.0 0.1 0.27 10.9 0.0 2.0 2 1 0 2 2 2 0 Dephospho-CoA kinase ABC_tran PF00005.27 gi|55379708|ref|YP_137558.1| - 0.065 13.7 0.0 0.093 13.2 0.0 1.4 1 1 0 1 1 1 0 ABC transporter polyprenyl_synt PF00348.17 gi|55379709|ref|YP_137559.1| - 4.5e-56 189.7 0.0 5.5e-56 189.5 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DUF4075 PF13294.6 gi|55379709|ref|YP_137559.1| - 0.094 12.9 0.0 0.43 10.8 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4075) ETF_alpha PF00766.19 gi|55379710|ref|YP_137560.1| - 1.9e-35 120.7 0.9 4.7e-35 119.5 0.2 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|55379710|ref|YP_137560.1| - 1.1e-31 110.2 2.7 1.5e-31 109.7 2.7 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|55379711|ref|YP_137561.1| - 7.7e-41 140.0 6.1 7.7e-41 140.0 6.1 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain SBP_bac_1 PF01547.25 gi|55379711|ref|YP_137561.1| - 0.047 13.6 1.0 0.077 12.9 1.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein CoA_binding_2 PF13380.6 gi|55379711|ref|YP_137561.1| - 0.054 14.0 0.6 0.2 12.1 0.2 2.1 2 1 0 2 2 2 0 CoA binding domain DUF1127 PF06568.11 gi|55379711|ref|YP_137561.1| - 0.13 12.0 0.1 0.13 12.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) HTH_IclR PF09339.10 gi|55379712|ref|YP_137562.1| - 0.0041 16.9 0.0 0.01 15.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain BiPBP_C PF06832.12 gi|55379713|ref|YP_137563.1| - 0.012 15.6 0.2 0.067 13.2 0.2 2.3 1 1 1 2 2 2 0 Penicillin-Binding Protein C-terminus Family SHOCT PF09851.9 gi|55379713|ref|YP_137563.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Short C-terminal domain Methyltransf_11 PF08241.12 gi|55379714|ref|YP_137564.1| - 1.4e-25 89.7 0.0 2.4e-25 89.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55379714|ref|YP_137564.1| - 9.1e-23 80.8 0.0 1.7e-22 80.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55379714|ref|YP_137564.1| - 3.4e-17 62.6 0.0 4.2e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|55379714|ref|YP_137564.1| - 4.2e-16 59.0 0.0 6.8e-14 51.8 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|55379714|ref|YP_137564.1| - 1.4e-14 54.7 0.0 2.1e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55379714|ref|YP_137564.1| - 1.7e-14 54.0 0.0 2.1e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|55379714|ref|YP_137564.1| - 2.4e-06 26.8 0.0 3.6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|55379714|ref|YP_137564.1| - 2.7e-05 23.3 0.0 3.6e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|55379714|ref|YP_137564.1| - 9.5e-05 22.1 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|55379714|ref|YP_137564.1| - 9.8e-05 22.2 0.0 0.00013 21.8 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|55379714|ref|YP_137564.1| - 0.0005 19.5 0.0 0.00072 18.9 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|55379714|ref|YP_137564.1| - 0.00075 18.9 0.0 0.0015 17.9 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 gi|55379714|ref|YP_137564.1| - 0.0087 15.7 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|55379714|ref|YP_137564.1| - 0.026 13.1 0.0 0.03 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|55379714|ref|YP_137564.1| - 0.082 12.5 0.0 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain FtsJ PF01728.19 gi|55379714|ref|YP_137564.1| - 0.093 12.8 0.0 0.1 12.7 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|55379714|ref|YP_137564.1| - 0.2 11.6 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|55379714|ref|YP_137564.1| - 0.2 11.1 0.1 0.62 9.5 0.0 1.7 2 0 0 2 2 2 0 MraW methylase family V-ATPase_G_2 PF16999.5 gi|55379715|ref|YP_137565.1| - 1.8e-05 25.1 23.8 2.2e-05 24.8 23.8 1.1 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|55379715|ref|YP_137565.1| - 0.00015 21.8 30.3 0.00033 20.7 30.3 1.7 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.15 gi|55379715|ref|YP_137565.1| - 0.00016 22.2 22.4 0.00043 20.8 22.4 1.7 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF883 PF05957.13 gi|55379715|ref|YP_137565.1| - 0.0014 19.2 17.1 0.085 13.5 12.5 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.8 gi|55379715|ref|YP_137565.1| - 0.0073 15.7 26.0 0.23 10.8 17.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|55379715|ref|YP_137565.1| - 0.034 14.2 19.3 0.48 10.5 8.6 2.2 1 1 1 2 2 2 0 DivIVA protein PIN_8 PF18476.1 gi|55379715|ref|YP_137565.1| - 0.035 14.0 7.3 0.04 13.8 7.3 1.1 1 0 0 1 1 1 0 PIN like domain Apolipoprotein PF01442.18 gi|55379715|ref|YP_137565.1| - 0.043 13.7 21.7 0.058 13.3 21.7 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain kleA_kleC PF17383.2 gi|55379715|ref|YP_137565.1| - 0.044 14.1 2.5 0.044 14.1 2.5 2.8 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A Mitofilin PF09731.9 gi|55379715|ref|YP_137565.1| - 0.094 11.5 17.4 0.11 11.3 17.4 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein YtxH PF12732.7 gi|55379715|ref|YP_137565.1| - 0.095 13.3 14.1 2.6 8.7 8.3 2.3 1 1 1 2 2 2 0 YtxH-like protein HrpE PF06188.12 gi|55379715|ref|YP_137565.1| - 0.17 11.7 14.1 0.32 10.8 14.1 1.4 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Sds3 PF08598.11 gi|55379715|ref|YP_137565.1| - 0.25 11.3 9.2 0.34 10.9 9.2 1.2 1 0 0 1 1 1 0 Sds3-like DUF2514 PF10721.9 gi|55379715|ref|YP_137565.1| - 0.28 11.2 12.9 0.36 10.8 12.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2514) Phasin PF05597.11 gi|55379715|ref|YP_137565.1| - 0.46 10.5 12.0 1.3 9.0 3.7 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Atg14 PF10186.9 gi|55379715|ref|YP_137565.1| - 0.5 9.4 7.5 0.7 8.9 7.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 OmpH PF03938.14 gi|55379715|ref|YP_137565.1| - 0.65 10.3 17.7 0.76 10.1 17.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Remorin_C PF03763.13 gi|55379715|ref|YP_137565.1| - 1.5 8.7 18.0 1.8 8.5 6.3 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region dCache_2 PF08269.11 gi|55379715|ref|YP_137565.1| - 2 7.5 5.9 0.85 8.7 3.6 1.5 1 1 0 1 1 1 0 Cache domain Caudo_TAP PF02413.17 gi|55379715|ref|YP_137565.1| - 2.6 8.2 15.3 8 6.6 2.1 2.3 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK HSP70 PF00012.20 gi|55379715|ref|YP_137565.1| - 5.5 5.1 14.1 6.4 4.8 14.1 1.0 1 0 0 1 1 1 0 Hsp70 protein DUF4407 PF14362.6 gi|55379715|ref|YP_137565.1| - 6.9 5.9 12.4 9 5.5 12.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) V_ATPase_I PF01496.19 gi|55379716|ref|YP_137566.1| - 9.7e-15 53.6 8.7 6.2e-07 27.8 0.1 3.8 3 1 0 3 3 3 3 V-type ATPase 116kDa subunit family UPF0184 PF03670.13 gi|55379716|ref|YP_137566.1| - 0.05 14.0 0.7 0.11 12.9 0.7 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) ATP-synt_C PF00137.21 gi|55379717|ref|YP_137567.1| - 8.4e-14 51.7 10.7 8.4e-14 51.7 10.7 1.6 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|55379718|ref|YP_137568.1| - 1.1e-40 139.2 9.4 1.5e-40 138.8 9.4 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|55379718|ref|YP_137568.1| - 0.005 17.2 17.5 0.01 16.3 17.5 1.6 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|55379718|ref|YP_137568.1| - 0.1 12.7 14.6 0.052 13.6 11.0 2.2 1 1 1 2 2 2 0 DivIVA protein ATP-synt_B PF00430.18 gi|55379718|ref|YP_137568.1| - 0.37 10.9 26.4 1.2 9.2 23.7 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) T4_Rnl2_C PF18043.1 gi|55379718|ref|YP_137568.1| - 2.5 8.3 0.0 2.5 8.3 0.0 3.5 3 1 1 4 4 4 0 T4 RNA ligase 2 C-terminal vATP-synt_AC39 PF01992.16 gi|55379719|ref|YP_137569.1| - 4.8e-83 279.4 2.3 5.4e-83 279.3 2.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.8 gi|55379719|ref|YP_137569.1| - 0.031 14.8 0.9 1.2 9.6 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3209) ATP-synt_F PF01990.17 gi|55379720|ref|YP_137570.1| - 4e-15 55.9 0.0 4.5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|55379721|ref|YP_137571.1| - 3.3e-93 311.2 0.0 4.4e-93 310.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|55379721|ref|YP_137571.1| - 8.1e-41 138.7 0.1 1.3e-40 138.0 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|55379721|ref|YP_137571.1| - 2.2e-12 47.3 3.7 8.3e-12 45.5 3.7 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.22 gi|55379721|ref|YP_137571.1| - 0.015 15.5 0.2 2.7 8.3 0.0 2.7 3 0 0 3 3 3 0 Peptidase family M23 QRPTase_N PF02749.16 gi|55379721|ref|YP_137571.1| - 0.026 14.6 0.2 12 6.0 0.0 2.8 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain AAA_22 PF13401.6 gi|55379721|ref|YP_137571.1| - 0.033 14.4 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Npun_R1517 PF18068.1 gi|55379721|ref|YP_137571.1| - 0.15 12.4 0.2 0.45 10.9 0.0 1.9 2 0 0 2 2 2 0 Npun R1517 ATP-synt_ab PF00006.25 gi|55379722|ref|YP_137572.1| - 1.8e-65 220.6 0.0 2.5e-65 220.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|55379722|ref|YP_137572.1| - 1.5e-15 57.5 0.4 4.5e-15 55.9 0.4 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|55379722|ref|YP_137572.1| - 0.00017 21.7 0.4 0.00072 19.7 0.4 2.2 1 0 0 1 1 1 1 HAS barrel domain Bac_rhodopsin PF01036.18 gi|55379723|ref|YP_137573.1| - 1.8e-74 250.1 18.8 2.1e-74 249.9 18.8 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4149 PF13664.6 gi|55379723|ref|YP_137573.1| - 0.43 10.9 6.6 5.9 7.3 1.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) DUF4131 PF13567.6 gi|55379723|ref|YP_137573.1| - 0.52 10.0 13.9 0.74 9.4 4.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ATP-synt_D PF01813.17 gi|55379724|ref|YP_137574.1| - 2e-54 184.4 10.4 2.4e-54 184.2 10.4 1.1 1 0 0 1 1 1 1 ATP synthase subunit D DUF948 PF06103.11 gi|55379724|ref|YP_137574.1| - 0.23 11.8 1.7 4.6 7.6 0.1 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1272 PF06906.11 gi|55379725|ref|YP_137575.1| - 0.18 11.9 1.4 0.19 11.8 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) eRF1_2 PF03464.15 gi|55379726|ref|YP_137576.1| - 1.4e-42 145.2 0.0 3.6e-42 143.8 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|55379726|ref|YP_137576.1| - 1.2e-28 99.9 0.3 3.2e-28 98.5 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|55379726|ref|YP_137576.1| - 1.9e-17 63.7 0.1 5.2e-17 62.4 0.1 1.7 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|55379726|ref|YP_137576.1| - 6.8e-15 55.5 0.2 6.2e-14 52.4 0.1 2.3 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|55379726|ref|YP_137576.1| - 2.2e-07 30.9 0.0 3.4e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family12 PF18856.1 gi|55379726|ref|YP_137576.1| - 0.003 18.1 0.0 0.0077 16.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 Tir_receptor_M PF03549.14 gi|55379726|ref|YP_137576.1| - 0.14 12.6 0.1 2.7 8.4 0.0 2.8 2 1 1 3 3 3 0 Translocated intimin receptor (Tir) intimin-binding domain Zn-ribbon_8 PF09723.10 gi|55379726|ref|YP_137576.1| - 0.14 12.3 1.1 0.26 11.4 0.3 1.9 2 0 0 2 2 2 0 Zinc ribbon domain PGF-CTERM PF18204.1 gi|55379727|ref|YP_137577.1| - 1.6e-07 31.0 1.2 1.9e-07 30.8 1.2 1.1 1 0 0 1 1 1 1 PGF-CTERM motif AAA_31 PF13614.6 gi|55379728|ref|YP_137578.1| - 2.5e-18 66.6 0.0 4.1e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|55379728|ref|YP_137578.1| - 1e-17 64.4 8.2 8.2e-16 58.2 8.2 2.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|55379728|ref|YP_137578.1| - 7.8e-16 58.3 0.0 1.4e-15 57.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|55379728|ref|YP_137578.1| - 9.1e-09 35.1 0.1 1.6e-08 34.4 0.1 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|55379728|ref|YP_137578.1| - 2.3e-07 30.8 2.8 1.7e-06 28.0 0.2 2.9 2 1 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|55379728|ref|YP_137578.1| - 3e-07 30.0 0.4 6.9e-07 28.8 0.4 1.5 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|55379728|ref|YP_137578.1| - 3.1e-06 26.8 0.3 0.0041 16.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|55379728|ref|YP_137578.1| - 2.5e-05 23.6 1.7 0.0001 21.6 0.6 2.1 1 1 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.22 gi|55379728|ref|YP_137578.1| - 0.00037 20.2 2.0 0.029 14.0 0.4 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|55379728|ref|YP_137578.1| - 0.0024 17.6 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|55379728|ref|YP_137578.1| - 0.012 14.6 1.5 2.3 7.1 0.2 2.1 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|55379728|ref|YP_137578.1| - 0.02 14.7 0.1 0.042 13.7 0.1 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF1611 PF07755.11 gi|55379728|ref|YP_137578.1| - 0.027 13.8 0.6 0.75 9.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain VirC1 PF07015.11 gi|55379728|ref|YP_137578.1| - 0.04 13.2 0.7 0.17 11.1 0.2 1.9 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.6 gi|55379728|ref|YP_137578.1| - 0.047 13.2 2.9 0.13 11.8 1.9 2.1 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|55379728|ref|YP_137578.1| - 0.27 10.6 0.0 0.46 9.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HTH_10 PF04967.12 gi|55379729|ref|YP_137579.1| - 2.2e-20 72.2 0.2 3.7e-20 71.5 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55379729|ref|YP_137579.1| - 6.3e-05 22.9 0.5 0.00018 21.4 0.5 1.7 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_1 PF00126.27 gi|55379729|ref|YP_137579.1| - 0.14 12.2 1.0 0.81 9.7 1.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Fibrinogen_BP PF08017.11 gi|55379729|ref|YP_137579.1| - 0.14 10.6 0.0 0.19 10.1 0.0 1.1 1 0 0 1 1 1 0 Fibrinogen binding protein Abhydrolase_6 PF12697.7 gi|55379730|ref|YP_137580.1| - 2.1e-18 67.7 8.2 2.5e-18 67.5 8.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|55379730|ref|YP_137580.1| - 2.2e-09 37.4 0.1 1.6e-05 24.7 0.0 2.2 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|55379730|ref|YP_137580.1| - 0.0019 17.5 0.0 0.012 14.8 0.0 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|55379730|ref|YP_137580.1| - 0.0056 16.8 0.0 0.0094 16.1 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_8 PF06259.12 gi|55379730|ref|YP_137580.1| - 0.0077 15.9 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase DUF2974 PF11187.8 gi|55379730|ref|YP_137580.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PAF-AH_p_II PF03403.13 gi|55379730|ref|YP_137580.1| - 0.19 10.2 0.0 0.26 9.8 0.0 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II tRNA-synt_1d PF00750.19 gi|55379731|ref|YP_137581.1| - 8.9e-37 126.8 0.0 1.2e-36 126.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|55379731|ref|YP_137581.1| - 8.2e-35 119.6 0.0 2.8e-34 117.8 0.0 2.0 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|55379731|ref|YP_137581.1| - 3e-10 40.5 0.0 9.2e-10 39.0 0.0 1.8 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|55379731|ref|YP_137581.1| - 0.018 14.0 0.0 0.11 11.4 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|55379731|ref|YP_137581.1| - 0.035 13.5 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Peptidase_M50 PF02163.22 gi|55379732|ref|YP_137582.1| - 2.1e-24 86.2 0.4 3.5e-24 85.4 0.4 1.4 1 0 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|55379732|ref|YP_137582.1| - 3.4e-23 81.7 2.3 2e-08 34.4 0.0 3.4 1 1 2 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|55379732|ref|YP_137582.1| - 3.6e-14 52.3 3.2 1.9e-08 34.0 0.9 3.5 3 0 0 3 3 3 3 PDZ domain Tricorn_PDZ PF14685.6 gi|55379732|ref|YP_137582.1| - 3.4e-10 39.7 6.9 3.6e-06 26.8 0.9 3.5 2 1 1 3 3 3 2 Tricorn protease PDZ domain PDZ PF00595.24 gi|55379732|ref|YP_137582.1| - 8.9e-09 35.6 6.7 1.1e-06 28.9 0.6 3.3 3 1 1 4 4 4 2 PDZ domain PDZ_1 PF12812.7 gi|55379732|ref|YP_137582.1| - 0.039 14.0 0.0 5.1 7.2 0.0 3.1 3 0 0 3 3 3 0 PDZ-like domain PDZ_3 PF17815.1 gi|55379732|ref|YP_137582.1| - 0.12 12.3 0.0 0.7 9.7 0.0 2.1 2 0 0 2 2 2 0 PDZ domain Usp PF00582.26 gi|55379733|ref|YP_137583.1| - 1.9e-56 190.5 9.0 4.1e-31 108.4 1.5 2.1 2 0 0 2 2 2 2 Universal stress protein family SnoaL PF07366.12 gi|55379733|ref|YP_137583.1| - 0.066 13.0 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase Erythro_esteras PF05139.14 gi|55379733|ref|YP_137583.1| - 0.085 12.7 1.4 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 Erythromycin esterase DUF4428 PF14471.6 gi|55379734|ref|YP_137584.1| - 0.0043 16.9 0.8 0.015 15.2 0.8 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4428) Endonuclease_7 PF02945.15 gi|55379734|ref|YP_137584.1| - 0.0064 16.4 0.7 0.0068 16.3 0.7 1.1 1 0 0 1 1 1 1 Recombination endonuclease VII LPMO_10 PF03067.15 gi|55379734|ref|YP_137584.1| - 0.068 13.8 0.0 0.068 13.8 0.0 1.1 1 0 0 1 1 1 0 Lytic polysaccharide mono-oxygenase, cellulose-degrading Elf1 PF05129.13 gi|55379734|ref|YP_137584.1| - 0.081 13.0 0.5 0.37 10.9 0.5 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like tRNA-synt_1f PF01921.18 gi|55379735|ref|YP_137585.1| - 1.3e-102 343.4 0.0 1.9e-102 342.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|55379735|ref|YP_137585.1| - 2.6e-07 29.7 0.0 6.6e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|55379735|ref|YP_137585.1| - 0.00052 19.4 0.1 0.0081 15.5 0.0 2.6 4 0 0 4 4 4 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|55379735|ref|YP_137585.1| - 0.051 12.9 0.0 1.9 7.7 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.28 gi|55379736|ref|YP_137586.1| - 1.6e-29 103.2 3.3 4.2e-29 101.8 3.3 1.6 1 1 0 1 1 1 1 Amino acid kinase family Peptidase_M50 PF02163.22 gi|55379738|ref|YP_137588.1| - 1.3e-14 54.1 7.5 2.8e-07 30.1 0.1 2.3 1 1 1 2 2 2 2 Peptidase family M50 AIRS PF00586.24 gi|55379739|ref|YP_137589.1| - 7.8e-19 68.1 4.8 1.6e-18 67.2 4.8 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|55379739|ref|YP_137589.1| - 8.9e-11 42.2 0.0 1.5e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain LPG_synthase_TM PF03706.13 gi|55379740|ref|YP_137590.1| - 1.1e-34 120.3 43.5 1.4e-34 120.0 43.5 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region HHH_5 PF14520.6 gi|55379740|ref|YP_137590.1| - 0.17 12.5 1.2 0.3 11.7 0.2 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S19e PF01090.19 gi|55379741|ref|YP_137591.1| - 5.2e-48 162.2 0.0 5.8e-48 162.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e MarR_2 PF12802.7 gi|55379741|ref|YP_137591.1| - 0.0016 18.3 0.4 0.04 13.8 0.0 2.7 3 0 0 3 3 3 1 MarR family GntR PF00392.21 gi|55379741|ref|YP_137591.1| - 0.011 15.3 0.0 0.17 11.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Mrr_N PF14338.6 gi|55379741|ref|YP_137591.1| - 0.03 14.4 0.2 0.26 11.4 0.1 2.1 2 0 0 2 2 2 0 Mrr N-terminal domain dsDNA_bind PF01984.20 gi|55379742|ref|YP_137592.1| - 6.8e-26 90.7 13.0 7.8e-26 90.5 13.0 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain cwf18 PF08315.12 gi|55379742|ref|YP_137592.1| - 0.018 15.7 8.2 0.022 15.4 8.2 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor Ciart PF15673.5 gi|55379742|ref|YP_137592.1| - 0.16 11.4 2.3 0.18 11.2 2.3 1.0 1 0 0 1 1 1 0 Circadian-associated transcriptional repressor DUF4637 PF15470.6 gi|55379742|ref|YP_137592.1| - 1.4 8.7 5.9 1.8 8.2 5.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4637) Asn_synthase PF00733.21 gi|55379743|ref|YP_137593.1| - 0.0059 16.3 0.1 0.0081 15.9 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase ATPgrasp_N PF18130.1 gi|55379743|ref|YP_137593.1| - 0.03 14.9 0.2 0.054 14.1 0.2 1.4 1 0 0 1 1 1 0 ATP-grasp N-terminal domain Arginosuc_synth PF00764.19 gi|55379743|ref|YP_137593.1| - 0.048 13.0 0.1 3 7.0 0.0 2.1 1 1 1 2 2 2 0 Arginosuccinate synthase QueC PF06508.13 gi|55379743|ref|YP_137593.1| - 0.059 12.9 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF5377 PF17347.2 gi|55379743|ref|YP_137593.1| - 0.1 12.9 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5377) Diphthami_syn_2 PF01902.17 gi|55379743|ref|YP_137593.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Diphthamide synthase ATPase PF06745.13 gi|55379744|ref|YP_137594.1| - 1.6e-11 44.0 0.0 2.9e-06 26.8 0.0 2.0 1 1 0 2 2 2 2 KaiC Rad51 PF08423.11 gi|55379744|ref|YP_137594.1| - 0.037 13.3 0.1 0.092 12.0 0.1 1.6 2 0 0 2 2 2 0 Rad51 GvpD PF07088.11 gi|55379744|ref|YP_137594.1| - 0.07 11.7 0.0 0.37 9.4 0.0 1.9 2 0 0 2 2 2 0 GvpD gas vesicle protein PAXNEB PF05625.11 gi|55379744|ref|YP_137594.1| - 0.11 11.5 0.0 0.96 8.5 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein tRNA-synt_His PF13393.6 gi|55379745|ref|YP_137595.1| - 8.4e-55 186.2 0.0 1.1e-54 185.8 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|55379745|ref|YP_137595.1| - 1.3e-11 44.4 0.0 3.1e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|55379745|ref|YP_137595.1| - 2.4e-09 37.4 0.0 4e-09 36.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Autoind_bind PF03472.15 gi|55379745|ref|YP_137595.1| - 0.091 12.2 0.0 0.41 10.1 0.0 2.0 2 0 0 2 2 2 0 Autoinducer binding domain Nudix_N PF12535.8 gi|55379745|ref|YP_137595.1| - 0.15 11.7 0.2 0.49 10.0 0.2 1.9 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal SHOCT PF09851.9 gi|55379746|ref|YP_137596.1| - 1.5e-09 37.3 0.2 2.2e-09 36.8 0.2 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55379746|ref|YP_137596.1| - 4.9e-05 23.3 0.5 4.9e-05 23.3 0.5 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|55379746|ref|YP_137596.1| - 0.063 13.3 0.9 0.082 12.9 0.9 1.3 1 0 0 1 1 1 0 Gas vesicle protein G TF_Zn_Ribbon PF08271.12 gi|55379747|ref|YP_137597.1| - 0.023 14.2 3.5 0.11 12.1 0.1 2.8 3 0 0 3 3 3 0 TFIIB zinc-binding XPA_N PF01286.18 gi|55379747|ref|YP_137597.1| - 0.043 13.9 2.0 2.9 8.0 0.0 2.3 2 0 0 2 2 2 0 XPA protein N-terminal zf-piccolo PF05715.13 gi|55379747|ref|YP_137597.1| - 0.044 13.9 0.6 1.6 9.0 0.3 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger zf_UBZ PF18439.1 gi|55379747|ref|YP_137597.1| - 0.046 13.3 0.5 0.52 10.0 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger LIM PF00412.22 gi|55379747|ref|YP_137597.1| - 0.048 13.9 0.3 0.11 12.7 0.2 1.7 1 1 0 1 1 1 0 LIM domain ADD_DNMT3 PF17980.1 gi|55379747|ref|YP_137597.1| - 0.06 13.3 0.3 0.21 11.6 0.3 1.8 1 1 1 2 2 2 0 Cysteine rich ADD domain in DNMT3 DZR PF12773.7 gi|55379747|ref|YP_137597.1| - 0.076 13.0 1.1 0.16 12.0 1.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55379747|ref|YP_137597.1| - 0.087 12.3 0.9 10 5.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_2 PF12797.7 gi|55379747|ref|YP_137597.1| - 0.091 12.9 1.7 1.9 8.7 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Rubredoxin_2 PF18073.1 gi|55379747|ref|YP_137597.1| - 0.45 10.3 2.6 6.2 6.6 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Acetyltransf_1 PF00583.25 gi|55379748|ref|YP_137598.1| - 7.2e-16 58.5 0.0 9.6e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55379748|ref|YP_137598.1| - 1.3e-12 48.0 0.0 1.9e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|55379748|ref|YP_137598.1| - 4.3e-11 42.9 0.0 5.9e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55379748|ref|YP_137598.1| - 8.7e-10 39.4 0.0 1.1e-09 39.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55379748|ref|YP_137598.1| - 8.2e-07 29.2 0.0 0.05 13.7 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55379748|ref|YP_137598.1| - 5.4e-06 26.3 0.0 8.4e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|55379748|ref|YP_137598.1| - 0.00024 21.3 0.0 0.00033 20.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|55379748|ref|YP_137598.1| - 0.022 14.9 0.0 0.031 14.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|55379748|ref|YP_137598.1| - 0.055 13.2 0.0 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|55379748|ref|YP_137598.1| - 0.13 12.4 0.0 0.32 11.1 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4222 PF13973.6 gi|55379748|ref|YP_137598.1| - 0.16 11.6 0.0 0.47 10.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4222) PseudoU_synth_1 PF01416.20 gi|55379749|ref|YP_137599.1| - 6.3e-17 62.0 0.0 1.3e-13 51.3 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.20 gi|55379750|ref|YP_137600.1| - 1.2e-68 232.5 1.8 1.2e-68 232.5 1.8 1.8 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|55379750|ref|YP_137600.1| - 1.9e-23 82.5 0.1 1.9e-23 82.5 0.1 2.9 3 0 0 3 3 3 1 Oligopeptidase F Reprolysin_3 PF13582.6 gi|55379750|ref|YP_137600.1| - 0.46 11.0 0.1 0.46 11.0 0.1 2.5 3 0 0 3 3 3 0 Metallo-peptidase family M12B Reprolysin-like AAA PF00004.29 gi|55379751|ref|YP_137601.1| - 4.3e-44 150.1 1.0 8.7e-44 149.1 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55379751|ref|YP_137601.1| - 2.6e-12 46.3 1.2 1.9e-11 43.6 0.4 2.7 2 0 0 2 2 2 1 AAA+ lid domain AAA_2 PF07724.14 gi|55379751|ref|YP_137601.1| - 1.6e-08 34.8 0.0 4e-08 33.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|55379751|ref|YP_137601.1| - 6.6e-08 32.4 0.2 5.6e-07 29.4 0.0 2.4 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|55379751|ref|YP_137601.1| - 2.3e-06 27.7 1.7 6.3e-06 26.2 0.2 2.5 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|55379751|ref|YP_137601.1| - 5.8e-06 26.8 5.9 0.00014 22.3 0.1 3.5 3 1 1 4 4 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379751|ref|YP_137601.1| - 2.9e-05 24.4 3.3 0.00039 20.7 0.2 3.1 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|55379751|ref|YP_137601.1| - 0.00039 19.7 0.0 0.00077 18.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|55379751|ref|YP_137601.1| - 0.0004 19.7 0.0 0.00084 18.6 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_33 PF13671.6 gi|55379751|ref|YP_137601.1| - 0.00068 19.8 0.3 0.0021 18.3 0.0 2.0 2 1 0 2 2 1 1 AAA domain Rootletin PF15035.6 gi|55379751|ref|YP_137601.1| - 0.00099 19.2 2.6 0.002 18.2 2.6 1.4 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion AAA_28 PF13521.6 gi|55379751|ref|YP_137601.1| - 0.0017 18.6 1.2 0.0064 16.8 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|55379751|ref|YP_137601.1| - 0.002 18.1 0.1 0.0054 16.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain Taxilin PF09728.9 gi|55379751|ref|YP_137601.1| - 0.0022 17.2 1.5 0.0037 16.5 1.5 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein AAA_18 PF13238.6 gi|55379751|ref|YP_137601.1| - 0.0024 18.4 0.1 0.016 15.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|55379751|ref|YP_137601.1| - 0.0026 17.2 0.0 0.0056 16.1 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|55379751|ref|YP_137601.1| - 0.003 17.3 0.2 0.041 13.6 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Prot_ATP_ID_OB PF16450.5 gi|55379751|ref|YP_137601.1| - 0.0032 17.4 0.5 0.0075 16.2 0.1 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain IstB_IS21 PF01695.17 gi|55379751|ref|YP_137601.1| - 0.0036 17.1 0.1 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.12 gi|55379751|ref|YP_137601.1| - 0.0048 16.8 0.1 0.042 13.8 0.0 2.3 1 1 1 2 2 2 1 NACHT domain ApoO PF09769.9 gi|55379751|ref|YP_137601.1| - 0.005 16.8 0.0 0.46 10.5 0.0 2.3 2 0 0 2 2 2 1 Apolipoprotein O AAA_17 PF13207.6 gi|55379751|ref|YP_137601.1| - 0.0059 17.0 1.2 0.019 15.4 0.1 2.5 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|55379751|ref|YP_137601.1| - 0.0066 16.4 0.6 0.16 11.9 0.0 2.8 3 0 0 3 3 3 1 NTPase COG6 PF06419.11 gi|55379751|ref|YP_137601.1| - 0.0096 14.2 1.1 0.015 13.6 1.1 1.2 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 AAA_11 PF13086.6 gi|55379751|ref|YP_137601.1| - 0.013 15.3 0.2 0.08 12.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain GAS PF13851.6 gi|55379751|ref|YP_137601.1| - 0.013 14.8 0.6 0.029 13.7 0.6 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding AAA_3 PF07726.11 gi|55379751|ref|YP_137601.1| - 0.016 15.1 0.0 0.042 13.7 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Prot_ATP_OB_N PF17758.1 gi|55379751|ref|YP_137601.1| - 0.016 14.9 0.1 0.054 13.2 0.1 2.0 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain TsaE PF02367.17 gi|55379751|ref|YP_137601.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE HAP1_N PF04849.13 gi|55379751|ref|YP_137601.1| - 0.017 14.4 3.6 0.033 13.4 3.6 1.4 1 0 0 1 1 1 0 HAP1 N-terminal conserved region bZIP_1 PF00170.21 gi|55379751|ref|YP_137601.1| - 0.017 15.2 3.5 0.41 10.8 0.2 2.6 1 1 1 2 2 2 0 bZIP transcription factor NB-ARC PF00931.22 gi|55379751|ref|YP_137601.1| - 0.024 13.9 0.0 0.059 12.5 0.0 1.7 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 gi|55379751|ref|YP_137601.1| - 0.025 14.1 0.0 0.062 12.8 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|55379751|ref|YP_137601.1| - 0.037 14.4 0.0 0.079 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase CPT PF07931.12 gi|55379751|ref|YP_137601.1| - 0.039 13.8 0.0 0.089 12.6 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|55379751|ref|YP_137601.1| - 0.047 13.8 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_24 PF13479.6 gi|55379751|ref|YP_137601.1| - 0.059 13.1 0.5 0.16 11.7 0.1 2.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|55379751|ref|YP_137601.1| - 0.061 13.8 0.5 0.27 11.7 0.0 2.3 3 1 0 3 3 2 0 ABC transporter Laminin_II PF06009.12 gi|55379751|ref|YP_137601.1| - 0.11 12.6 1.1 0.3 11.1 0.9 1.9 2 0 0 2 2 1 0 Laminin Domain II DUF5595 PF18077.1 gi|55379751|ref|YP_137601.1| - 0.11 12.5 2.0 0.26 11.4 2.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) APG6_N PF17675.1 gi|55379751|ref|YP_137601.1| - 0.13 12.7 4.3 0.57 10.7 4.3 2.0 1 0 0 1 1 1 0 Apg6 coiled-coil region ATPase PF06745.13 gi|55379751|ref|YP_137601.1| - 0.14 11.5 2.3 0.28 10.5 0.3 2.4 2 1 0 2 2 2 0 KaiC YabA PF06156.13 gi|55379751|ref|YP_137601.1| - 0.17 12.6 2.5 0.46 11.1 1.9 2.1 2 0 0 2 2 1 0 Initiation control protein YabA Parvo_NS1 PF01057.17 gi|55379751|ref|YP_137601.1| - 0.18 10.9 0.0 0.33 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MEDS PF14417.6 gi|55379751|ref|YP_137601.1| - 0.21 11.4 1.1 3.6 7.4 0.0 2.9 3 0 0 3 3 3 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Nsp1_C PF05064.13 gi|55379751|ref|YP_137601.1| - 0.27 11.0 4.4 0.73 9.7 2.9 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF3450 PF11932.8 gi|55379751|ref|YP_137601.1| - 0.31 10.3 4.0 0.13 11.6 0.9 1.9 3 0 0 3 3 1 0 Protein of unknown function (DUF3450) AAA_23 PF13476.6 gi|55379751|ref|YP_137601.1| - 0.32 11.5 3.3 9 6.7 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|55379751|ref|YP_137601.1| - 0.42 10.2 6.2 0.68 9.5 0.1 3.2 2 1 0 3 3 3 0 AAA domain TSC22 PF01166.18 gi|55379751|ref|YP_137601.1| - 0.5 10.7 8.7 0.17 12.2 0.6 3.1 2 1 1 3 3 2 0 TSC-22/dip/bun family bZIP_2 PF07716.15 gi|55379751|ref|YP_137601.1| - 0.77 9.9 3.5 0.56 10.3 0.5 2.2 1 1 1 2 2 2 0 Basic region leucine zipper DivIC PF04977.15 gi|55379751|ref|YP_137601.1| - 1.1 9.1 4.5 1.1 9.1 2.7 1.9 2 0 0 2 2 1 0 Septum formation initiator TolA_bind_tri PF16331.5 gi|55379751|ref|YP_137601.1| - 5.4 7.2 10.9 0.45 10.6 3.8 2.7 3 0 0 3 3 2 0 TolA binding protein trimerisation ZapB PF06005.12 gi|55379751|ref|YP_137601.1| - 5.8 7.4 11.2 0.99 9.9 5.4 2.6 3 0 0 3 3 2 0 Cell division protein ZapB DeoRC PF00455.22 gi|55379752|ref|YP_137602.1| - 2.1e-42 144.8 0.0 3e-42 144.3 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|55379752|ref|YP_137602.1| - 3.1e-19 68.4 0.1 5.2e-19 67.7 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|55379752|ref|YP_137602.1| - 9.2e-09 35.1 0.2 2.1e-08 34.0 0.2 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|55379752|ref|YP_137602.1| - 8.2e-08 31.8 0.2 2e-07 30.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|55379752|ref|YP_137602.1| - 7e-07 29.0 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55379752|ref|YP_137602.1| - 1.2e-05 25.2 0.4 0.00017 21.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55379752|ref|YP_137602.1| - 0.0001 22.1 0.2 0.00039 20.3 0.1 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|55379752|ref|YP_137602.1| - 0.00021 21.1 0.1 0.0011 18.8 0.0 2.2 3 1 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|55379752|ref|YP_137602.1| - 0.00041 19.8 0.8 0.00058 19.4 0.1 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|55379752|ref|YP_137602.1| - 0.00064 19.5 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|55379752|ref|YP_137602.1| - 0.0017 18.3 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|55379752|ref|YP_137602.1| - 0.0029 17.9 0.0 0.0058 17.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Put_DNA-bind_N PF06971.13 gi|55379752|ref|YP_137602.1| - 0.0056 16.7 0.1 0.011 15.7 0.1 1.5 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_28 PF13518.6 gi|55379752|ref|YP_137602.1| - 0.0058 16.7 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|55379752|ref|YP_137602.1| - 0.0086 15.8 0.1 0.038 13.8 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|55379752|ref|YP_137602.1| - 0.011 15.6 0.1 0.027 14.4 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PaaX PF07848.12 gi|55379752|ref|YP_137602.1| - 0.012 15.8 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein Sigma70_r4 PF04545.16 gi|55379752|ref|YP_137602.1| - 0.033 13.7 1.4 0.12 11.9 1.2 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|55379752|ref|YP_137602.1| - 0.034 14.3 0.0 0.086 13.1 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.13 gi|55379752|ref|YP_137602.1| - 0.045 14.3 0.0 0.092 13.3 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain SpoIIID PF12116.8 gi|55379752|ref|YP_137602.1| - 0.057 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D RP-C PF03428.13 gi|55379752|ref|YP_137602.1| - 0.063 12.9 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_Tnp_Tc3_2 PF01498.18 gi|55379752|ref|YP_137602.1| - 0.068 13.4 0.2 0.13 12.6 0.2 1.4 1 0 0 1 1 1 0 Transposase HTH_32 PF13565.6 gi|55379752|ref|YP_137602.1| - 0.077 13.6 0.1 0.69 10.6 0.1 2.4 2 0 0 2 2 2 0 Homeodomain-like domain DUF977 PF06163.11 gi|55379752|ref|YP_137602.1| - 0.12 12.4 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_10 PF04967.12 gi|55379752|ref|YP_137602.1| - 0.14 12.0 0.0 0.35 10.7 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain AbiEi_4 PF13338.6 gi|55379752|ref|YP_137602.1| - 0.17 12.0 0.1 0.39 10.9 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_6 PF01418.17 gi|55379752|ref|YP_137602.1| - 0.17 11.8 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family ABC_tran PF00005.27 gi|55379754|ref|YP_137604.1| - 2.2e-30 106.0 0.0 4.1e-30 105.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|55379754|ref|YP_137604.1| - 1.3e-14 54.1 0.3 3.8e-14 52.6 0.1 2.0 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|55379754|ref|YP_137604.1| - 1.2e-13 51.7 0.1 2.7e-12 47.3 0.0 3.0 3 0 0 3 3 2 1 MalK OB fold domain TOBE PF03459.17 gi|55379754|ref|YP_137604.1| - 1.2e-08 35.1 0.0 8.2e-08 32.4 0.2 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|55379754|ref|YP_137604.1| - 1.3e-08 35.0 0.1 0.0001 22.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55379754|ref|YP_137604.1| - 2.8e-05 23.7 0.1 9.9e-05 21.9 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|55379754|ref|YP_137604.1| - 6.6e-05 23.4 0.1 0.0016 19.0 0.0 3.1 3 0 0 3 3 2 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 gi|55379754|ref|YP_137604.1| - 0.0013 19.2 0.6 0.0033 17.8 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379754|ref|YP_137604.1| - 0.0016 18.7 0.7 0.0036 17.6 0.7 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379754|ref|YP_137604.1| - 0.005 17.3 0.0 0.012 16.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|55379754|ref|YP_137604.1| - 0.0074 16.0 0.0 0.016 14.9 0.0 1.5 1 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|55379754|ref|YP_137604.1| - 0.0091 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|55379754|ref|YP_137604.1| - 0.012 15.4 0.0 0.024 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|55379754|ref|YP_137604.1| - 0.012 15.5 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|55379754|ref|YP_137604.1| - 0.016 14.8 0.0 0.34 10.5 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|55379754|ref|YP_137604.1| - 0.018 15.6 1.7 0.053 14.0 1.7 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|55379754|ref|YP_137604.1| - 0.03 14.6 0.4 0.055 13.7 0.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|55379754|ref|YP_137604.1| - 0.055 13.0 0.4 0.11 12.0 0.1 1.8 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|55379754|ref|YP_137604.1| - 0.067 12.6 0.1 3.3 7.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.6 gi|55379754|ref|YP_137604.1| - 0.075 13.2 0.2 0.14 12.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|55379754|ref|YP_137604.1| - 0.092 12.7 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|55379754|ref|YP_137604.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|55379755|ref|YP_137605.1| - 2e-24 86.3 12.7 2e-24 86.3 12.7 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|55379756|ref|YP_137606.1| - 1.8e-17 63.7 15.2 1.8e-17 63.7 15.2 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|55379757|ref|YP_137607.1| - 8.4e-27 94.7 1.4 1.1e-26 94.3 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|55379757|ref|YP_137607.1| - 1.3e-17 64.7 3.1 1.3e-17 64.7 3.1 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|55379757|ref|YP_137607.1| - 0.00027 20.6 3.0 0.00052 19.8 3.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence PQQ_3 PF13570.6 gi|55379758|ref|YP_137608.1| - 3.9e-51 170.3 40.0 1.3e-10 41.5 0.1 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|55379758|ref|YP_137608.1| - 6.9e-43 146.9 20.0 2.3e-17 63.4 4.3 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|55379758|ref|YP_137608.1| - 8.8e-39 129.7 19.2 1.1e-08 34.5 0.5 7.7 8 0 0 8 8 8 6 PQQ enzyme repeat TruB_C PF09142.11 gi|55379758|ref|YP_137608.1| - 0.083 12.7 2.0 4.5 7.1 0.3 3.7 3 1 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal SUKH-4 PF14435.6 gi|55379758|ref|YP_137608.1| - 0.25 11.4 7.5 11 6.0 0.2 4.3 3 1 1 4 4 4 0 SUKH-4 immunity protein PvlArgDC PF01862.16 gi|55379759|ref|YP_137609.1| - 7.1e-32 110.5 0.1 8.6e-32 110.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Gram_pos_anchor PF00746.21 gi|55379761|ref|YP_137611.1| - 4.6 7.3 5.7 4.8 7.2 0.0 2.3 1 1 1 2 2 2 0 LPXTG cell wall anchor motif TAT_signal PF10518.9 gi|55379762|ref|YP_137612.1| - 0.39 10.7 2.4 0.71 9.8 2.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GTP_EFTU PF00009.27 gi|55379763|ref|YP_137613.1| - 4e-30 104.8 0.1 8.5e-29 100.5 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|55379763|ref|YP_137613.1| - 1.4e-25 89.0 0.2 6.3e-25 86.9 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|55379763|ref|YP_137613.1| - 5.3e-23 81.2 0.6 1.7e-22 79.6 0.6 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|55379763|ref|YP_137613.1| - 2.8e-13 50.0 4.3 1.2e-08 35.2 0.1 2.9 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|55379763|ref|YP_137613.1| - 1.5e-08 34.7 0.2 7.6e-08 32.4 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|55379763|ref|YP_137613.1| - 0.00055 20.0 0.3 0.11 12.6 0.1 2.7 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|55379763|ref|YP_137613.1| - 0.0016 18.3 0.0 0.0063 16.3 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|55379763|ref|YP_137613.1| - 0.041 14.1 0.0 0.15 12.3 0.0 2.0 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Copper-bind PF00127.20 gi|55379764|ref|YP_137614.1| - 2.8e-16 59.8 0.0 5e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|55379764|ref|YP_137614.1| - 0.0034 17.5 0.0 0.011 15.8 0.0 1.9 1 1 1 2 2 2 1 Cupredoxin-like domain MGC-24 PF05283.11 gi|55379764|ref|YP_137614.1| - 5.4 7.5 12.6 9.3 6.7 12.6 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin PRC PF05239.16 gi|55379765|ref|YP_137615.1| - 2.8e-11 43.3 0.0 3e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain PIN_6 PF17146.4 gi|55379766|ref|YP_137616.1| - 1.7e-14 54.0 0.1 3.1e-14 53.2 0.1 1.4 1 0 0 1 1 1 1 PIN domain of ribonuclease HypA PF01155.19 gi|55379766|ref|YP_137616.1| - 0.00044 20.2 0.2 0.00081 19.4 0.2 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_5 PF08745.11 gi|55379766|ref|YP_137616.1| - 0.001 18.6 1.0 0.0032 16.9 0.5 1.9 1 1 1 2 2 2 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|55379766|ref|YP_137616.1| - 0.0021 18.2 1.9 0.0052 16.9 1.9 1.6 1 0 0 1 1 1 1 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|55379766|ref|YP_137616.1| - 0.0042 17.1 2.4 0.15 12.1 0.2 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DUF4411 PF14367.6 gi|55379766|ref|YP_137616.1| - 0.0047 16.8 0.2 0.24 11.3 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) zf-C3HC4_3 PF13920.6 gi|55379766|ref|YP_137616.1| - 0.0097 15.8 0.4 0.014 15.3 0.4 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Rad50_zn_hook PF04423.14 gi|55379766|ref|YP_137616.1| - 0.01 15.6 1.1 0.13 12.2 0.8 2.7 1 1 1 2 2 2 0 Rad50 zinc hook motif DZR PF12773.7 gi|55379766|ref|YP_137616.1| - 0.032 14.3 1.0 0.05 13.6 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|55379766|ref|YP_137616.1| - 0.033 14.1 0.7 0.063 13.2 0.7 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.11 gi|55379766|ref|YP_137616.1| - 0.035 14.3 0.4 0.072 13.3 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like C1_2 PF03107.16 gi|55379766|ref|YP_137616.1| - 0.037 14.3 0.1 0.058 13.7 0.1 1.3 1 0 0 1 1 1 0 C1 domain zf-C2HC_2 PF13913.6 gi|55379766|ref|YP_137616.1| - 0.043 13.7 5.0 0.11 12.4 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc-ribbons_6 PF07191.12 gi|55379766|ref|YP_137616.1| - 0.056 13.4 0.3 0.092 12.7 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_4 PF14447.6 gi|55379766|ref|YP_137616.1| - 0.058 13.3 1.3 0.11 12.3 1.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zinc_ribbon_15 PF17032.5 gi|55379766|ref|YP_137616.1| - 0.059 14.1 0.1 0.084 13.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family Mut7-C PF01927.16 gi|55379766|ref|YP_137616.1| - 0.091 12.9 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-C2H2 PF00096.26 gi|55379766|ref|YP_137616.1| - 0.17 12.4 2.0 9.3 6.9 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|55379766|ref|YP_137616.1| - 0.4 11.7 1.8 31 5.8 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DprA_WH PF17782.1 gi|55379767|ref|YP_137617.1| - 0.0029 17.7 0.1 0.0044 17.1 0.1 1.3 1 0 0 1 1 1 1 DprA winged helix domain RHH_1 PF01402.21 gi|55379767|ref|YP_137617.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.5 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family IF2_N PF04760.15 gi|55379767|ref|YP_137617.1| - 0.034 14.0 0.0 0.046 13.6 0.0 1.2 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region ANT PF03374.14 gi|55379767|ref|YP_137617.1| - 0.13 12.6 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain CPBP PF02517.16 gi|55379768|ref|YP_137618.1| - 5.7e-14 52.3 3.2 5.7e-14 52.3 3.2 3.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease PGI PF00342.19 gi|55379769|ref|YP_137619.1| - 1e-26 93.6 0.0 2.1e-25 89.3 0.0 2.1 1 1 0 1 1 1 1 Phosphoglucose isomerase DUF2070 PF09843.9 gi|55379770|ref|YP_137620.1| - 5.2 5.2 8.9 6.1 5.0 8.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) YrhC PF14143.6 gi|55379770|ref|YP_137620.1| - 8.5 6.6 9.7 2.1 8.5 0.3 3.1 3 0 0 3 3 3 0 YrhC-like protein TatD_DNase PF01026.21 gi|55379771|ref|YP_137621.1| - 0.039 13.3 0.2 0.057 12.8 0.2 1.3 1 0 0 1 1 1 0 TatD related DNase SecD_SecF PF02355.16 gi|55379773|ref|YP_137623.1| - 1.4e-26 93.0 11.3 2.1e-26 92.5 11.3 1.2 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|55379773|ref|YP_137623.1| - 0.00075 18.9 0.0 0.0017 17.7 0.0 1.7 1 0 0 1 1 1 1 SecD/SecF GG Motif Clc-like PF07062.12 gi|55379773|ref|YP_137623.1| - 0.011 15.2 0.6 0.029 13.9 0.2 1.8 1 1 1 2 2 2 0 Clc-like DUF3188 PF11384.8 gi|55379773|ref|YP_137623.1| - 0.22 11.3 0.1 0.22 11.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) Patched PF02460.18 gi|55379773|ref|YP_137623.1| - 0.66 8.0 13.5 0.86 7.6 13.5 1.1 1 0 0 1 1 1 0 Patched family COX4 PF02936.14 gi|55379773|ref|YP_137623.1| - 3.2 7.8 4.4 7.2 6.6 0.2 2.8 3 0 0 3 3 3 0 Cytochrome c oxidase subunit IV SecD_SecF PF02355.16 gi|55379774|ref|YP_137624.1| - 2e-17 63.2 4.3 4.4e-17 62.1 4.3 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|55379774|ref|YP_137624.1| - 6.7e-05 22.0 10.6 0.00013 21.1 10.6 1.4 1 0 0 1 1 1 1 MMPL family DUF872 PF05915.12 gi|55379774|ref|YP_137624.1| - 0.14 12.3 0.2 1.8 8.8 0.0 2.4 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Podoplanin PF05808.11 gi|55379774|ref|YP_137624.1| - 6 7.0 6.3 6.9 6.7 2.1 2.5 2 0 0 2 2 2 0 Podoplanin RNase_HII PF01351.18 gi|55379775|ref|YP_137625.1| - 3.7e-37 128.1 0.0 4.3e-37 127.9 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII THUMP PF02926.17 gi|55379776|ref|YP_137626.1| - 7.7e-06 26.1 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|55379776|ref|YP_137626.1| - 0.0015 18.9 3.5 0.0035 17.7 0.3 2.6 3 0 0 3 3 3 1 DnaJ central domain Anti-TRAP PF15777.5 gi|55379776|ref|YP_137626.1| - 2.6 8.1 8.9 0.26 11.3 1.4 2.8 3 0 0 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein MS_channel PF00924.18 gi|55379777|ref|YP_137627.1| - 9.4e-47 159.2 0.0 2.1e-46 158.1 0.0 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF948 PF06103.11 gi|55379777|ref|YP_137627.1| - 0.048 13.9 0.8 0.1 12.9 0.3 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) BacA PF02673.18 gi|55379778|ref|YP_137628.1| - 5e-47 160.8 12.8 5.8e-47 160.6 12.8 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF4382 PF14321.6 gi|55379779|ref|YP_137629.1| - 1.2e-23 83.9 1.3 1.4e-23 83.7 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) TAT_signal PF10518.9 gi|55379779|ref|YP_137629.1| - 0.0011 18.7 4.6 0.0021 17.8 4.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|55379779|ref|YP_137629.1| - 0.078 12.3 0.4 0.14 11.5 0.4 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CheF-arch PF04283.12 gi|55379780|ref|YP_137630.1| - 1.3e-57 195.0 0.1 3.1e-57 193.8 0.0 1.6 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea TMEM208_SND2 PF05620.11 gi|55379782|ref|YP_137632.1| - 0.035 13.9 0.4 0.035 13.9 0.4 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 Usp PF00582.26 gi|55379783|ref|YP_137633.1| - 9.3e-41 139.6 2.2 1.1e-40 139.4 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|55379783|ref|YP_137633.1| - 0.0058 16.5 0.6 0.86 9.5 0.0 2.2 1 1 1 2 2 2 2 Electron transfer flavoprotein domain baeRF_family10 PF18854.1 gi|55379783|ref|YP_137633.1| - 0.055 13.7 1.2 0.08 13.2 1.0 1.4 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 DUF3226 PF11536.8 gi|55379783|ref|YP_137633.1| - 0.14 11.8 0.2 2 8.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) SSF PF00474.17 gi|55379784|ref|YP_137634.1| - 1.4e-50 172.3 34.0 1.7e-50 172.1 34.0 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.6 gi|55379785|ref|YP_137635.1| - 2.6e-23 82.2 0.2 3.2e-23 81.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) AMP-binding PF00501.28 gi|55379786|ref|YP_137636.1| - 2.8e-89 299.6 0.0 3.3e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55379786|ref|YP_137636.1| - 5.7e-23 81.7 0.4 1.2e-22 80.7 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|55379786|ref|YP_137636.1| - 7.8e-14 51.3 2.6 7.8e-14 51.3 2.6 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus BAT PF15915.5 gi|55379787|ref|YP_137637.1| - 6.9e-41 139.7 11.8 6.9e-41 139.7 11.8 3.2 3 1 1 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|55379787|ref|YP_137637.1| - 2.6e-21 75.2 0.0 1.1e-20 73.1 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.6 gi|55379787|ref|YP_137637.1| - 2e-06 28.1 3.1 0.00011 22.5 1.4 3.1 2 1 0 2 2 2 1 GAF domain Phage_integrase PF00589.22 gi|55379787|ref|YP_137637.1| - 3.4e-05 23.7 0.0 7.6e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family GAF_3 PF13492.6 gi|55379787|ref|YP_137637.1| - 0.00015 22.1 0.1 0.00041 20.7 0.1 1.8 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.16 gi|55379787|ref|YP_137637.1| - 0.0011 18.4 0.0 0.0074 15.8 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|55379787|ref|YP_137637.1| - 0.0016 18.4 0.3 0.015 15.3 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|55379787|ref|YP_137637.1| - 0.0046 16.5 0.0 0.023 14.2 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|55379787|ref|YP_137637.1| - 0.022 14.6 0.1 0.88 9.5 0.0 2.9 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.12 gi|55379787|ref|YP_137637.1| - 0.049 13.6 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 gi|55379787|ref|YP_137637.1| - 0.11 12.0 0.0 0.29 10.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55379787|ref|YP_137637.1| - 0.15 11.9 0.1 0.48 10.3 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family AMP-binding PF00501.28 gi|55379788|ref|YP_137638.1| - 7.8e-81 271.8 0.2 1.7e-80 270.7 0.2 1.5 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|55379788|ref|YP_137638.1| - 5.7e-19 68.9 0.4 1.3e-18 67.7 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|55379788|ref|YP_137638.1| - 1.1e-14 54.1 0.4 2.7e-14 52.8 0.4 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus CheF-arch PF04283.12 gi|55379789|ref|YP_137639.1| - 1.8e-63 214.2 2.3 1.8e-63 214.2 2.3 1.4 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea NTP_transferase PF00483.23 gi|55379790|ref|YP_137640.1| - 3.9e-37 128.2 0.0 4.8e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55379790|ref|YP_137640.1| - 5.2e-16 59.4 0.2 8.1e-16 58.8 0.2 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|55379790|ref|YP_137640.1| - 9.3e-13 47.4 8.5 3.5e-11 42.3 1.5 3.7 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|55379790|ref|YP_137640.1| - 1.9e-07 31.1 0.2 3.8e-07 30.1 0.2 1.6 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|55379790|ref|YP_137640.1| - 2.5e-07 30.3 7.3 7e-07 28.9 1.4 3.5 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|55379791|ref|YP_137641.1| - 8.2e-55 184.2 0.7 8.7e-27 93.6 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|55379791|ref|YP_137641.1| - 1.9e-22 79.9 0.9 3e-22 79.2 0.1 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|55379791|ref|YP_137641.1| - 5.8e-20 71.4 0.0 1.1e-19 70.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|55379791|ref|YP_137641.1| - 0.031 14.3 0.1 0.24 11.4 0.0 2.4 2 0 0 2 2 2 0 SIS domain GATase_4 PF13230.6 gi|55379791|ref|YP_137641.1| - 0.032 13.1 0.0 0.058 12.3 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Bac_transf PF02397.16 gi|55379792|ref|YP_137642.1| - 7.2e-35 120.3 0.0 7.9e-35 120.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial sugar transferase PapD-like PF14874.6 gi|55379792|ref|YP_137642.1| - 0.1 12.7 0.0 0.24 11.6 0.0 1.6 2 0 0 2 2 2 0 Flagellar-associated PapD-like NTP_transferase PF00483.23 gi|55379793|ref|YP_137643.1| - 2.8e-43 148.3 0.0 3.4e-43 148.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|55379793|ref|YP_137643.1| - 6.7e-15 55.8 0.0 8.1e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|55379793|ref|YP_137643.1| - 1.1e-05 25.3 0.0 5.7e-05 23.0 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRDD PF13597.6 gi|55379793|ref|YP_137643.1| - 0.16 10.7 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase UDPG_MGDP_dh_N PF03721.14 gi|55379794|ref|YP_137644.1| - 4e-53 179.8 0.0 8.2e-53 178.8 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|55379794|ref|YP_137644.1| - 4.9e-36 122.8 0.0 8.6e-36 122.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|55379794|ref|YP_137644.1| - 2.6e-26 92.1 0.1 1.4e-25 89.7 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|55379794|ref|YP_137644.1| - 0.00012 22.0 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|55379794|ref|YP_137644.1| - 0.00026 21.0 0.0 0.00058 19.9 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|55379794|ref|YP_137644.1| - 0.00063 19.4 0.1 0.0014 18.3 0.1 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|55379794|ref|YP_137644.1| - 0.00063 19.1 1.0 0.0086 15.3 0.4 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55379794|ref|YP_137644.1| - 0.0034 17.9 0.2 0.013 16.0 0.2 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|55379794|ref|YP_137644.1| - 0.0047 17.2 1.1 0.034 14.4 0.0 3.0 4 0 0 4 4 4 1 TrkA-N domain NAD_binding_8 PF13450.6 gi|55379794|ref|YP_137644.1| - 0.005 17.1 0.1 0.014 15.6 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|55379794|ref|YP_137644.1| - 0.024 14.0 0.0 0.19 11.1 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|55379794|ref|YP_137644.1| - 0.042 14.4 0.0 0.91 10.0 0.0 2.8 3 0 0 3 3 3 0 XdhC Rossmann domain DUF2795 PF11387.8 gi|55379794|ref|YP_137644.1| - 0.11 12.8 0.4 0.3 11.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) DUF43 PF01861.16 gi|55379794|ref|YP_137644.1| - 0.12 11.6 0.1 0.44 9.7 0.0 1.9 2 0 0 2 2 2 0 Branched-chain polyamine synthase A C-terminal domain Rossmann-like PF10727.9 gi|55379794|ref|YP_137644.1| - 0.12 12.2 0.3 0.45 10.4 0.1 2.1 2 0 0 2 2 2 0 Rossmann-like domain NAD_binding_11 PF14833.6 gi|55379794|ref|YP_137644.1| - 0.27 11.5 1.2 3.7 7.8 0.1 2.7 3 0 0 3 3 3 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YdjM PF04307.14 gi|55379795|ref|YP_137645.1| - 1.7e-06 27.5 5.8 8.6e-06 25.2 5.8 1.8 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Rep_fac-A_3 PF08661.11 gi|55379796|ref|YP_137646.1| - 0.00079 19.7 0.0 0.001 19.4 0.0 1.1 1 0 0 1 1 1 1 Replication factor A protein 3 DUF4131 PF13567.6 gi|55379796|ref|YP_137646.1| - 0.0012 18.5 0.3 0.16 11.6 0.0 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4131) tRNA_anti-codon PF01336.25 gi|55379796|ref|YP_137646.1| - 0.035 14.1 0.2 5.4 7.1 0.0 2.2 1 1 1 2 2 2 0 OB-fold nucleic acid binding domain AglB_L1 PF18079.1 gi|55379797|ref|YP_137647.1| - 7.8e-07 29.3 7.5 2.1e-05 24.7 7.5 2.5 1 1 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|55379797|ref|YP_137647.1| - 4.5e-06 25.9 11.5 1e-05 24.7 11.2 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit CarboxypepD_reg PF13620.6 gi|55379797|ref|YP_137647.1| - 0.003 17.8 11.0 0.0081 16.4 11.0 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|55379797|ref|YP_137647.1| - 0.006 17.0 0.2 0.014 15.8 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) fn3_3 PF14686.6 gi|55379797|ref|YP_137647.1| - 0.015 15.1 0.9 0.036 13.9 0.9 1.6 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain II Dioxygenase_C PF00775.21 gi|55379797|ref|YP_137647.1| - 0.13 11.7 0.1 0.37 10.2 0.1 1.7 2 0 0 2 2 2 0 Dioxygenase Dpy19 PF10034.9 gi|55379797|ref|YP_137647.1| - 0.32 9.1 0.5 0.48 8.6 0.5 1.2 1 0 0 1 1 1 0 Q-cell neuroblast polarisation Epimerase PF01370.21 gi|55379798|ref|YP_137648.1| - 7.4e-41 140.2 0.0 9e-41 139.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55379798|ref|YP_137648.1| - 6.2e-26 91.6 0.0 7.3e-26 91.4 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|55379798|ref|YP_137648.1| - 4e-25 88.5 0.0 5.1e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|55379798|ref|YP_137648.1| - 2.2e-22 79.4 0.0 3.3e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|55379798|ref|YP_137648.1| - 5.3e-14 52.0 0.0 3.1e-13 49.5 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|55379798|ref|YP_137648.1| - 2.3e-09 36.8 0.0 1.2e-06 27.9 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|55379798|ref|YP_137648.1| - 5.1e-06 26.5 0.0 3.3e-05 23.9 0.0 2.2 3 0 0 3 3 3 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|55379798|ref|YP_137648.1| - 0.00031 21.0 0.4 0.00072 19.8 0.1 1.9 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|55379798|ref|YP_137648.1| - 0.0025 17.4 0.1 0.036 13.6 0.1 2.3 2 1 0 2 2 2 1 NmrA-like family DapB_N PF01113.20 gi|55379798|ref|YP_137648.1| - 0.013 15.6 0.1 0.026 14.7 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|55379798|ref|YP_137648.1| - 0.031 14.7 0.0 0.12 12.9 0.0 2.0 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DUF3821 PF12863.7 gi|55379798|ref|YP_137648.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) Ldh_1_N PF00056.23 gi|55379798|ref|YP_137648.1| - 0.11 12.6 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|55379799|ref|YP_137649.1| - 3.9e-48 164.0 0.0 4.6e-48 163.8 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55379799|ref|YP_137649.1| - 1.9e-32 113.0 0.0 3.9e-32 112.0 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|55379799|ref|YP_137649.1| - 7.9e-25 87.4 0.0 1.8e-24 86.2 0.0 1.5 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55379799|ref|YP_137649.1| - 5.9e-14 51.8 0.0 7.1e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|55379799|ref|YP_137649.1| - 4.9e-12 45.6 0.0 1.3e-11 44.1 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|55379799|ref|YP_137649.1| - 1.8e-11 44.3 0.0 2.6e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|55379799|ref|YP_137649.1| - 9.6e-09 34.8 0.1 1.8e-06 27.3 0.1 2.5 2 1 0 2 2 2 1 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|55379799|ref|YP_137649.1| - 0.00021 21.6 0.0 0.00049 20.4 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|55379799|ref|YP_137649.1| - 0.0063 16.1 0.0 0.065 12.8 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family Ldh_1_N PF00056.23 gi|55379799|ref|YP_137649.1| - 0.0069 16.5 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain KR PF08659.10 gi|55379799|ref|YP_137649.1| - 0.062 13.2 0.2 0.34 10.8 0.2 2.0 1 1 0 1 1 1 0 KR domain Semialdhyde_dh PF01118.24 gi|55379799|ref|YP_137649.1| - 0.14 12.6 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|55379800|ref|YP_137650.1| - 3.2e-20 72.6 0.0 8e-20 71.3 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55379800|ref|YP_137650.1| - 1.9e-14 53.8 0.1 1e-13 51.4 0.1 2.1 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|55379800|ref|YP_137650.1| - 0.00048 19.4 0.0 0.015 14.4 0.0 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|55379800|ref|YP_137650.1| - 0.0082 15.3 0.0 0.069 12.2 0.0 2.5 3 1 0 3 3 3 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|55379800|ref|YP_137650.1| - 0.022 13.8 0.0 0.043 12.8 0.0 1.6 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family CBS PF00571.28 gi|55379803|ref|YP_137653.1| - 7.3e-21 74.4 4.2 4.4e-12 46.3 0.2 2.1 2 0 0 2 2 2 2 CBS domain MafB19-deam PF14437.6 gi|55379804|ref|YP_137654.1| - 4.6e-17 62.0 0.0 5.7e-17 61.7 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|55379804|ref|YP_137654.1| - 4.6e-14 52.1 0.0 7.4e-14 51.5 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|55379804|ref|YP_137654.1| - 9.8e-05 22.4 0.0 0.00014 22.0 0.0 1.2 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 NAD2 PF18782.1 gi|55379804|ref|YP_137654.1| - 0.0014 18.8 0.0 0.0018 18.4 0.0 1.1 1 0 0 1 1 1 1 Novel AID APOBEC clade 2 NAD1 PF18778.1 gi|55379804|ref|YP_137654.1| - 0.0023 18.1 0.0 0.0032 17.6 0.0 1.2 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|55379804|ref|YP_137654.1| - 0.0047 17.0 0.0 0.0065 16.5 0.0 1.2 1 0 0 1 1 1 1 APOBEC2 APOBEC_N PF08210.11 gi|55379804|ref|YP_137654.1| - 0.012 15.6 0.0 0.014 15.3 0.0 1.1 1 0 0 1 1 1 0 APOBEC-like N-terminal domain OTT_1508_deam PF14441.6 gi|55379804|ref|YP_137654.1| - 0.02 14.9 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 OTT_1508-like deaminase GFO_IDH_MocA PF01408.22 gi|55379805|ref|YP_137655.1| - 1.8e-26 93.3 0.4 2.9e-26 92.7 0.4 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Tox-MPTase5 PF15641.6 gi|55379805|ref|YP_137655.1| - 0.05 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Metallopeptidase toxin 5 Methyltrn_RNA_2 PF04013.12 gi|55379806|ref|YP_137656.1| - 1e-62 211.4 0.0 1.1e-62 211.2 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase NUDIX PF00293.28 gi|55379808|ref|YP_137658.1| - 3.7e-12 46.4 0.1 5.3e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain AAA_30 PF13604.6 gi|55379808|ref|YP_137658.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RHH_1 PF01402.21 gi|55379809|ref|YP_137659.1| - 0.014 15.3 3.2 0.26 11.3 3.2 2.2 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF3924 PF13062.6 gi|55379809|ref|YP_137659.1| - 0.054 13.4 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3924) TGT PF01702.18 gi|55379810|ref|YP_137660.1| - 1.5e-76 257.9 0.0 1.9e-76 257.5 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|55379810|ref|YP_137660.1| - 0.032 14.5 0.2 0.32 11.3 0.0 2.2 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Amidohydro_1 PF01979.20 gi|55379810|ref|YP_137660.1| - 0.15 11.3 0.0 2.5 7.3 0.0 2.1 2 0 0 2 2 2 0 Amidohydrolase family Epimerase PF01370.21 gi|55379811|ref|YP_137661.1| - 4.5e-21 75.4 0.1 6.6e-20 71.6 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|55379811|ref|YP_137661.1| - 3.4e-14 53.0 0.0 3.5e-11 43.1 0.0 2.5 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|55379811|ref|YP_137661.1| - 1.1e-09 37.8 0.0 1.8e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|55379811|ref|YP_137661.1| - 3.5e-05 23.1 0.0 7.4e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|55379811|ref|YP_137661.1| - 0.0007 18.8 0.1 0.018 14.2 0.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|55379811|ref|YP_137661.1| - 0.0017 18.3 0.2 0.005 16.7 0.2 1.8 1 1 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|55379811|ref|YP_137661.1| - 0.0039 16.3 0.0 0.0074 15.3 0.0 1.5 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family Alginate_lyase PF05426.12 gi|55379812|ref|YP_137662.1| - 1.6e-53 182.0 3.9 2.6e-53 181.3 3.9 1.3 1 0 0 1 1 1 1 Alginate lyase TPR_3 PF07720.12 gi|55379812|ref|YP_137662.1| - 5.5 7.1 10.7 5 7.2 1.6 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF5591 PF17884.1 gi|55379813|ref|YP_137663.1| - 6.8e-60 201.4 0.0 9.7e-60 200.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|55379813|ref|YP_137663.1| - 4.2e-24 84.4 0.0 1.9e-23 82.3 0.1 2.0 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|55379813|ref|YP_137663.1| - 2.2e-15 56.7 0.0 1.7e-14 53.8 0.0 2.2 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|55379813|ref|YP_137663.1| - 2.8e-12 46.4 0.0 7.1e-12 45.1 0.0 1.7 1 0 0 1 1 1 1 PUA domain VanZ PF04892.12 gi|55379814|ref|YP_137664.1| - 2.9e-06 28.0 0.2 3.4e-06 27.7 0.2 1.2 1 0 0 1 1 1 1 VanZ like family DUF2279 PF10043.9 gi|55379814|ref|YP_137664.1| - 0.024 15.4 0.0 0.036 14.8 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) Radical_SAM PF04055.21 gi|55379815|ref|YP_137665.1| - 0.027 14.8 0.0 0.048 14.0 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily TOBE PF03459.17 gi|55379816|ref|YP_137666.1| - 2.8e-13 49.9 0.7 2.8e-13 49.9 0.7 3.6 3 1 0 3 3 3 1 TOBE domain HTH_1 PF00126.27 gi|55379816|ref|YP_137666.1| - 3.7e-11 42.8 0.5 7.8e-11 41.8 0.5 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|55379816|ref|YP_137666.1| - 0.017 15.2 0.1 0.043 14.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1932 PF09130.11 gi|55379816|ref|YP_137666.1| - 0.052 13.5 0.1 0.24 11.4 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1932) TOBE_2 PF08402.10 gi|55379816|ref|YP_137666.1| - 0.34 11.1 4.7 0.4 10.9 0.1 2.9 2 1 1 3 3 3 0 TOBE domain ABC_tran PF00005.27 gi|55379817|ref|YP_137667.1| - 4.7e-32 111.4 0.0 9.5e-32 110.4 0.0 1.5 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|55379817|ref|YP_137667.1| - 4e-12 46.6 0.0 3.3e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55379817|ref|YP_137667.1| - 9.6e-07 28.5 0.0 1.7e-06 27.6 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|55379817|ref|YP_137667.1| - 1.4e-06 28.8 0.7 7.5e-06 26.4 0.7 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|55379817|ref|YP_137667.1| - 0.00025 21.3 0.2 0.00082 19.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|55379817|ref|YP_137667.1| - 0.00036 20.2 0.4 0.00098 18.7 0.3 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|55379817|ref|YP_137667.1| - 0.00069 19.6 0.0 0.0026 17.7 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_18 PF13238.6 gi|55379817|ref|YP_137667.1| - 0.0023 18.5 0.1 0.0082 16.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|55379817|ref|YP_137667.1| - 0.0024 18.2 0.1 0.0097 16.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55379817|ref|YP_137667.1| - 0.0029 17.3 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|55379817|ref|YP_137667.1| - 0.0055 16.9 0.5 0.018 15.2 0.5 2.1 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|55379817|ref|YP_137667.1| - 0.0057 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain SbcCD_C PF13558.6 gi|55379817|ref|YP_137667.1| - 0.0073 16.5 0.5 0.24 11.7 0.5 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|55379817|ref|YP_137667.1| - 0.0078 16.1 0.0 0.76 9.7 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.29 gi|55379817|ref|YP_137667.1| - 0.0081 16.6 0.0 0.036 14.5 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|55379817|ref|YP_137667.1| - 0.0083 15.9 4.6 0.16 11.7 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|55379817|ref|YP_137667.1| - 0.0095 16.2 0.1 0.025 14.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|55379817|ref|YP_137667.1| - 0.0096 15.7 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|55379817|ref|YP_137667.1| - 0.016 15.0 0.0 0.43 10.2 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain TraG-D_C PF12696.7 gi|55379817|ref|YP_137667.1| - 0.017 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG MMR_HSR1 PF01926.23 gi|55379817|ref|YP_137667.1| - 0.021 14.9 0.1 0.048 13.8 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|55379817|ref|YP_137667.1| - 0.024 15.1 0.0 0.039 14.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|55379817|ref|YP_137667.1| - 0.034 13.1 0.0 0.41 9.5 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.22 gi|55379817|ref|YP_137667.1| - 0.036 13.3 0.1 0.043 13.0 0.1 1.5 1 1 0 1 1 1 0 NB-ARC domain CbiA PF01656.23 gi|55379817|ref|YP_137667.1| - 0.039 14.0 0.0 0.058 13.5 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_5 PF07728.14 gi|55379817|ref|YP_137667.1| - 0.048 13.7 0.0 0.14 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|55379817|ref|YP_137667.1| - 0.084 12.9 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|55379817|ref|YP_137667.1| - 0.089 12.7 0.1 0.2 11.5 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea ParA PF10609.9 gi|55379817|ref|YP_137667.1| - 0.098 12.1 0.1 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|55379817|ref|YP_137667.1| - 0.14 11.8 0.0 0.43 10.2 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NPH3 PF03000.14 gi|55379817|ref|YP_137667.1| - 0.15 11.7 0.1 3.3 7.3 0.0 2.0 2 0 0 2 2 2 0 NPH3 family Roc PF08477.13 gi|55379817|ref|YP_137667.1| - 0.19 12.0 0.0 0.49 10.6 0.0 1.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase BPD_transp_1 PF00528.22 gi|55379818|ref|YP_137668.1| - 4.6e-15 55.8 6.0 4.6e-15 55.8 6.0 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|55379819|ref|YP_137669.1| - 2.9e-32 112.5 1.1 4e-32 112.0 1.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|55379819|ref|YP_137669.1| - 1.7e-05 24.7 0.0 2.9e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein RPA_C PF08784.11 gi|55379819|ref|YP_137669.1| - 0.064 13.9 0.1 0.18 12.5 0.1 1.7 1 0 0 1 1 1 0 Replication protein A C terminal TAT_signal PF10518.9 gi|55379819|ref|YP_137669.1| - 0.17 11.8 0.9 0.97 9.4 0.1 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence GATase_5 PF13507.6 gi|55379820|ref|YP_137670.1| - 1.3e-30 106.4 0.0 1.7e-30 106.0 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|55379820|ref|YP_137670.1| - 0.014 15.2 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|55379820|ref|YP_137670.1| - 0.028 14.0 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PurS PF02700.14 gi|55379821|ref|YP_137671.1| - 5.5e-26 90.5 0.0 6.1e-26 90.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase CHAD PF05235.14 gi|55379821|ref|YP_137671.1| - 0.019 14.9 0.9 0.023 14.7 0.9 1.1 1 0 0 1 1 1 0 CHAD domain DUF835 PF05763.12 gi|55379822|ref|YP_137672.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) GAF PF01590.26 gi|55379823|ref|YP_137673.1| - 5.5e-12 46.5 0.3 1.1e-11 45.4 0.1 1.6 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|55379823|ref|YP_137673.1| - 8.3e-05 22.7 0.0 0.00018 21.7 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|55379823|ref|YP_137673.1| - 0.0024 18.2 0.5 0.005 17.1 0.2 1.7 2 0 0 2 2 2 1 GAF domain K_channel_TID PF07941.11 gi|55379823|ref|YP_137673.1| - 0.26 11.7 3.7 12 6.5 0.5 2.5 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain Formyl_trans_N PF00551.19 gi|55379824|ref|YP_137674.1| - 3.6e-42 144.1 0.0 5.2e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase PAP2 PF01569.21 gi|55379825|ref|YP_137675.1| - 1.6e-17 63.5 4.3 1.6e-17 63.5 4.3 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|55379825|ref|YP_137675.1| - 7.3e-10 38.8 12.2 2e-09 37.4 12.2 1.8 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|55379825|ref|YP_137675.1| - 0.011 16.3 1.5 0.011 16.2 0.1 1.7 2 0 0 2 2 2 0 PAP2 superfamily C-terminal SAICAR_synt PF01259.18 gi|55379826|ref|YP_137676.1| - 8.6e-26 91.1 0.0 2.7e-25 89.4 0.0 1.6 1 1 0 1 1 1 1 SAICAR synthetase Na_Ca_ex PF01699.24 gi|55379827|ref|YP_137677.1| - 2.3e-43 147.8 31.1 2.4e-22 79.5 8.6 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Radical_SAM PF04055.21 gi|55379828|ref|YP_137678.1| - 6.9e-13 49.3 0.2 1.4e-12 48.3 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|55379829|ref|YP_137679.1| - 9.7e-15 55.3 0.1 1.5e-14 54.7 0.1 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Bac_rhodopsin PF01036.18 gi|55379830|ref|YP_137680.1| - 4.7e-34 117.9 21.1 5.6e-34 117.6 21.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MCPsignal PF00015.21 gi|55379831|ref|YP_137681.1| - 1.4e-45 155.2 30.7 1.4e-45 155.2 30.7 4.2 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|55379831|ref|YP_137681.1| - 5.1e-06 26.7 51.8 0.0018 18.5 4.8 5.7 3 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|55379831|ref|YP_137681.1| - 5.4e-05 23.2 40.0 0.039 14.0 5.0 5.0 2 2 2 5 5 5 4 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|55379831|ref|YP_137681.1| - 0.00028 21.1 21.0 0.21 11.9 0.5 5.1 4 1 1 5 5 5 3 Uncharacterized conserved protein Laminin_II PF06009.12 gi|55379831|ref|YP_137681.1| - 0.00032 20.7 48.8 0.012 15.6 9.0 5.2 3 2 2 5 5 5 2 Laminin Domain II HAMP PF00672.25 gi|55379831|ref|YP_137681.1| - 0.00075 19.8 0.5 0.00075 19.8 0.5 5.6 5 1 0 5 5 4 1 HAMP domain GAS PF13851.6 gi|55379831|ref|YP_137681.1| - 0.00092 18.6 25.5 0.4 10.0 7.3 3.6 3 1 0 3 3 3 3 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 gi|55379831|ref|YP_137681.1| - 0.0027 17.9 3.1 0.0027 17.9 3.1 5.1 4 1 1 5 5 5 1 TATA element modulatory factor 1 TATA binding Spc7 PF08317.11 gi|55379831|ref|YP_137681.1| - 0.0033 16.3 50.5 0.15 10.9 15.2 4.1 2 2 2 4 4 4 3 Spc7 kinetochore protein EzrA PF06160.12 gi|55379831|ref|YP_137681.1| - 0.0073 14.5 38.1 0.03 12.5 6.4 3.5 3 1 0 3 3 3 2 Septation ring formation regulator, EzrA IFT57 PF10498.9 gi|55379831|ref|YP_137681.1| - 0.01 14.8 5.3 0.01 14.8 5.3 4.3 2 2 1 4 4 4 0 Intra-flagellar transport protein 57 BLOC1_2 PF10046.9 gi|55379831|ref|YP_137681.1| - 0.01 16.1 40.8 1.1 9.7 3.2 6.5 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|55379831|ref|YP_137681.1| - 0.068 11.8 44.8 0.014 14.0 7.5 3.0 2 1 1 3 3 3 0 AAA domain Sec34 PF04136.15 gi|55379831|ref|YP_137681.1| - 0.12 12.3 33.6 0.29 11.0 0.9 5.7 2 2 1 5 5 5 0 Sec34-like family CENP-F_leu_zip PF10473.9 gi|55379831|ref|YP_137681.1| - 0.28 11.2 40.6 1.4 9.0 6.0 4.2 2 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF489 PF04356.12 gi|55379831|ref|YP_137681.1| - 0.36 10.8 20.5 0.057 13.4 3.1 3.6 2 1 0 3 3 3 0 Protein of unknown function (DUF489) DUF3450 PF11932.8 gi|55379831|ref|YP_137681.1| - 0.42 9.9 58.7 0.41 9.9 5.2 5.0 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) T3SSipB PF16535.5 gi|55379831|ref|YP_137681.1| - 0.44 11.0 59.9 1.2 9.6 12.3 4.5 1 1 2 4 4 4 0 Type III cell invasion protein SipB Tweety PF04906.13 gi|55379831|ref|YP_137681.1| - 0.45 9.1 23.0 0.94 8.1 1.2 3.3 2 1 1 3 3 3 0 Tweety Yuri_gagarin PF15934.5 gi|55379831|ref|YP_137681.1| - 0.47 10.3 14.5 1.2 8.9 0.9 3.4 2 1 1 3 3 3 0 Yuri gagarin Filament PF00038.21 gi|55379831|ref|YP_137681.1| - 0.65 9.5 46.3 2.9 7.4 10.6 4.3 2 2 0 2 2 2 0 Intermediate filament protein Atg14 PF10186.9 gi|55379831|ref|YP_137681.1| - 0.66 9.0 26.3 0.043 12.9 3.9 2.9 2 1 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DASH_Hsk3 PF08227.11 gi|55379831|ref|YP_137681.1| - 0.93 9.9 4.5 7.3 7.0 0.5 3.1 2 0 0 2 2 2 0 DASH complex subunit Hsk3 like Fib_alpha PF08702.10 gi|55379831|ref|YP_137681.1| - 1.2 9.4 36.0 0.42 10.8 4.6 4.8 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family TMPIT PF07851.13 gi|55379831|ref|YP_137681.1| - 1.4 8.1 32.6 0.23 10.7 4.6 4.6 2 2 3 5 5 5 0 TMPIT-like protein MscS_porin PF12795.7 gi|55379831|ref|YP_137681.1| - 1.8 8.1 56.2 1.7 8.1 20.6 3.9 2 1 2 4 4 4 0 Mechanosensitive ion channel porin domain MAD PF05557.13 gi|55379831|ref|YP_137681.1| - 2.3 6.5 42.7 2.3 6.5 24.2 2.5 2 1 0 2 2 2 0 Mitotic checkpoint protein DUF2203 PF09969.9 gi|55379831|ref|YP_137681.1| - 2.7 8.7 40.1 3.7 8.3 4.5 5.2 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Prefoldin_2 PF01920.20 gi|55379831|ref|YP_137681.1| - 3.7 7.6 38.9 3.9 7.5 0.5 6.9 5 1 1 6 6 6 0 Prefoldin subunit Occludin_ELL PF07303.13 gi|55379831|ref|YP_137681.1| - 3.9 8.3 16.4 22 5.9 0.4 5.4 2 2 3 5 5 5 0 Occludin homology domain DUF4298 PF14131.6 gi|55379831|ref|YP_137681.1| - 5.4 7.0 14.0 8.9 6.3 0.3 5.5 4 2 1 6 6 6 0 Domain of unknown function (DUF4298) YkyA PF10368.9 gi|55379831|ref|YP_137681.1| - 6.5 6.4 49.1 1 9.0 10.7 4.6 2 2 2 4 4 4 0 Putative cell-wall binding lipoprotein SpoVR PF04293.13 gi|55379831|ref|YP_137681.1| - 7.1 5.2 16.3 0.19 10.4 3.2 2.4 2 0 0 2 2 2 0 SpoVR like protein AIP3 PF03915.13 gi|55379831|ref|YP_137681.1| - 8.3 5.4 41.1 0.12 11.5 8.7 2.7 1 1 0 2 2 2 0 Actin interacting protein 3 COG5 PF10392.9 gi|55379831|ref|YP_137681.1| - 8.4 6.6 21.9 4.4 7.5 2.2 3.8 2 2 1 3 3 3 0 Golgi transport complex subunit 5 Lebercilin PF15619.6 gi|55379831|ref|YP_137681.1| - 9.7 5.8 25.0 0.086 12.5 6.1 3.5 2 2 1 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease CofC PF01983.16 gi|55379832|ref|YP_137682.1| - 4.7e-39 133.8 0.0 5.6e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|55379832|ref|YP_137682.1| - 6.5e-05 23.3 1.1 0.0001 22.7 1.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain CD34_antigen PF06365.12 gi|55379833|ref|YP_137683.1| - 0.031 13.8 0.1 0.074 12.6 0.0 1.7 2 0 0 2 2 2 0 CD34/Podocalyxin family Orthoreo_P10 PF07204.11 gi|55379833|ref|YP_137683.1| - 0.088 12.8 0.3 0.19 11.7 0.1 1.6 1 1 0 1 1 1 0 Orthoreovirus membrane fusion protein p10 DUF4366 PF14283.6 gi|55379833|ref|YP_137683.1| - 0.11 12.5 2.0 0.22 11.6 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) PTS_IIA PF02255.16 gi|55379833|ref|YP_137683.1| - 0.47 10.5 7.5 0.12 12.4 2.8 2.3 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF4398 PF14346.6 gi|55379833|ref|YP_137683.1| - 0.95 10.1 14.6 9.7 6.9 14.6 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) MT0933_antitox PF14013.6 gi|55379833|ref|YP_137683.1| - 7 7.0 8.0 8.8 6.7 1.0 2.7 3 0 0 3 3 3 0 MT0933-like antitoxin protein Tubulin PF00091.25 gi|55379834|ref|YP_137684.1| - 2e-27 96.7 0.0 3.1e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|55379834|ref|YP_137684.1| - 0.016 14.5 0.1 0.032 13.4 0.1 1.6 1 1 0 1 1 1 0 Tubulin like NAD_binding_10 PF13460.6 gi|55379835|ref|YP_137685.1| - 4.3e-31 108.2 0.0 5.8e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|55379835|ref|YP_137685.1| - 9.7e-18 64.5 0.0 5.2e-17 62.1 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|55379835|ref|YP_137685.1| - 1.1e-14 54.6 0.0 1.5e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|55379835|ref|YP_137685.1| - 1e-13 50.9 0.0 4.4e-12 45.6 0.0 2.2 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|55379835|ref|YP_137685.1| - 6.1e-11 42.0 0.0 4.5e-06 26.0 0.0 2.3 3 0 0 3 3 3 2 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|55379835|ref|YP_137685.1| - 6.7e-06 25.7 0.0 1.2e-05 24.8 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|55379835|ref|YP_137685.1| - 1e-05 24.9 0.0 0.00013 21.2 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|55379835|ref|YP_137685.1| - 2.8e-05 23.4 0.0 0.03 13.5 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|55379835|ref|YP_137685.1| - 0.0002 20.9 0.0 0.00032 20.2 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|55379835|ref|YP_137685.1| - 0.0019 18.5 0.0 0.0039 17.4 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|55379835|ref|YP_137685.1| - 0.017 15.0 0.1 0.04 13.8 0.1 1.6 1 1 0 1 1 1 0 KR domain NAD_binding_2 PF03446.15 gi|55379835|ref|YP_137685.1| - 0.018 15.2 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|55379835|ref|YP_137685.1| - 0.058 13.8 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Glyco_transf_4 PF13439.6 gi|55379835|ref|YP_137685.1| - 0.065 13.2 0.0 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 F420_oxidored PF03807.17 gi|55379835|ref|YP_137685.1| - 0.1 13.2 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_4 PF13579.6 gi|55379835|ref|YP_137685.1| - 0.1 13.0 0.1 0.23 11.9 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Thymidylate_kin PF02223.17 gi|55379836|ref|YP_137686.1| - 1.9e-34 119.0 0.0 2.4e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|55379836|ref|YP_137686.1| - 9.8e-07 29.0 0.1 2.7e-06 27.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|55379836|ref|YP_137686.1| - 6.4e-06 26.7 0.0 7.3e-05 23.3 0.0 2.4 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|55379836|ref|YP_137686.1| - 0.00016 21.6 0.0 0.0013 18.6 0.0 2.0 1 1 0 1 1 1 1 Deoxynucleoside kinase Arf PF00025.21 gi|55379836|ref|YP_137686.1| - 0.05 13.1 0.0 0.07 12.6 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|55379836|ref|YP_137686.1| - 0.15 11.5 0.0 0.45 9.9 0.0 1.9 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF2070 PF09843.9 gi|55379837|ref|YP_137687.1| - 0.19 10.0 6.9 0.2 9.9 6.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SBF PF01758.16 gi|55379837|ref|YP_137687.1| - 0.86 9.2 11.5 2.6 7.7 11.5 2.0 1 1 0 1 1 1 0 Sodium Bile acid symporter family DUF3290 PF11694.8 gi|55379837|ref|YP_137687.1| - 0.9 9.5 4.2 1.1 9.2 4.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3290) DUF2207 PF09972.9 gi|55379837|ref|YP_137687.1| - 1.3 7.7 4.8 1.8 7.2 4.8 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YqhR PF11085.8 gi|55379837|ref|YP_137687.1| - 2.5 8.0 8.0 3.2 7.7 8.0 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR AsnC_trans_reg PF01037.21 gi|55379838|ref|YP_137688.1| - 1.4e-09 37.7 0.1 1.6e-09 37.6 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrkA_N PF02254.18 gi|55379839|ref|YP_137689.1| - 4e-26 91.5 0.7 5.8e-26 91.0 0.7 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|55379839|ref|YP_137689.1| - 2.6e-11 43.2 0.2 7.9e-11 41.6 0.0 1.9 2 0 0 2 2 1 1 TrkA-C domain FAD_binding_3 PF01494.19 gi|55379839|ref|YP_137689.1| - 3.3e-06 26.6 0.3 4.7e-06 26.1 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|55379839|ref|YP_137689.1| - 1.3e-05 24.9 0.0 2.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|55379839|ref|YP_137689.1| - 1.6e-05 24.6 0.1 3.5e-05 23.5 0.1 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|55379839|ref|YP_137689.1| - 1.7e-05 24.6 0.6 2.1e-05 24.3 0.6 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|55379839|ref|YP_137689.1| - 3.4e-05 23.8 0.4 5.1e-05 23.2 0.4 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|55379839|ref|YP_137689.1| - 5.5e-05 23.5 0.2 0.0001 22.7 0.2 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|55379839|ref|YP_137689.1| - 0.00018 21.2 0.1 0.00032 20.3 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_2 PF07992.14 gi|55379839|ref|YP_137689.1| - 0.00032 20.0 0.1 0.00038 19.8 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55379839|ref|YP_137689.1| - 0.00039 20.9 0.4 0.00087 19.8 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|55379839|ref|YP_137689.1| - 0.00064 19.9 0.3 0.0014 18.8 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|55379839|ref|YP_137689.1| - 0.00084 18.7 0.1 0.0015 18.0 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|55379839|ref|YP_137689.1| - 0.0027 18.2 0.0 0.0061 17.1 0.0 1.7 2 0 0 2 2 1 1 XdhC Rossmann domain NAD_binding_10 PF13460.6 gi|55379839|ref|YP_137689.1| - 0.003 17.5 0.4 0.0051 16.7 0.4 1.4 1 0 0 1 1 1 1 NAD(P)H-binding FAD_binding_2 PF00890.24 gi|55379839|ref|YP_137689.1| - 0.0032 16.6 0.1 0.0033 16.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|55379839|ref|YP_137689.1| - 0.0037 16.0 0.0 0.0063 15.3 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_2 PF03446.15 gi|55379839|ref|YP_137689.1| - 0.0087 16.2 0.1 0.016 15.4 0.0 1.5 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|55379839|ref|YP_137689.1| - 0.01 16.1 0.1 0.015 15.6 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|55379839|ref|YP_137689.1| - 0.011 15.7 0.0 0.033 14.2 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_3 PF13738.6 gi|55379839|ref|YP_137689.1| - 0.012 14.9 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|55379839|ref|YP_137689.1| - 0.012 16.2 0.2 0.038 14.6 0.2 1.8 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent Epimerase PF01370.21 gi|55379839|ref|YP_137689.1| - 0.015 14.7 0.1 0.02 14.3 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AlaDh_PNT_C PF01262.21 gi|55379839|ref|YP_137689.1| - 0.02 14.2 0.1 0.025 13.9 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|55379839|ref|YP_137689.1| - 0.027 13.7 0.0 0.051 12.8 0.0 1.4 1 0 0 1 1 1 0 Thi4 family AdoHcyase_NAD PF00670.21 gi|55379839|ref|YP_137689.1| - 0.041 13.9 0.2 0.11 12.5 0.2 1.9 1 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|55379839|ref|YP_137689.1| - 0.083 13.7 0.1 0.15 12.9 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|55379839|ref|YP_137689.1| - 0.1 12.5 0.9 11 6.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_31 PF13847.6 gi|55379839|ref|YP_137689.1| - 0.13 12.0 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Glyco_transf_4 PF13439.6 gi|55379839|ref|YP_137689.1| - 0.15 12.0 0.6 0.36 10.8 0.3 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 NmrA PF05368.13 gi|55379839|ref|YP_137689.1| - 0.15 11.6 0.6 0.36 10.3 0.5 1.5 1 1 1 2 2 2 0 NmrA-like family Glyoxalase PF00903.25 gi|55379839|ref|YP_137689.1| - 0.2 11.9 0.1 0.52 10.5 0.1 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AsnC_trans_reg PF01037.21 gi|55379840|ref|YP_137690.1| - 4.4e-14 52.2 0.8 4.9e-14 52.0 0.8 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|55379840|ref|YP_137690.1| - 0.044 13.7 1.4 0.052 13.5 1.4 1.1 1 0 0 1 1 1 0 GYD domain ABC_tran PF00005.27 gi|55379844|ref|YP_137694.1| - 6.1e-34 117.5 0.0 2.5e-33 115.5 0.0 1.8 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|55379844|ref|YP_137694.1| - 5.7e-16 58.8 0.1 1.1e-15 57.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|55379844|ref|YP_137694.1| - 1.7e-05 24.8 3.3 0.0027 17.5 0.1 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55379844|ref|YP_137694.1| - 0.0022 17.5 0.0 0.0073 15.8 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55379844|ref|YP_137694.1| - 0.0022 18.2 0.5 0.015 15.6 0.5 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379844|ref|YP_137694.1| - 0.023 15.1 0.0 0.076 13.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|55379844|ref|YP_137694.1| - 0.037 13.6 1.7 9.1 5.8 0.1 3.0 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.25 gi|55379844|ref|YP_137694.1| - 0.043 13.5 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain YfdX PF10938.8 gi|55379844|ref|YP_137694.1| - 0.053 13.5 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 YfdX protein Sigma54_activat PF00158.26 gi|55379844|ref|YP_137694.1| - 0.069 12.8 0.1 14 5.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|55379844|ref|YP_137694.1| - 0.082 12.8 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|55379844|ref|YP_137694.1| - 0.11 12.8 2.3 0.082 13.3 0.5 1.8 2 1 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|55379844|ref|YP_137694.1| - 0.11 12.5 1.2 1.8 8.5 1.2 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.6 gi|55379844|ref|YP_137694.1| - 0.11 11.1 0.1 3 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|55379844|ref|YP_137694.1| - 0.16 11.3 0.0 0.32 10.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|55379844|ref|YP_137694.1| - 0.19 11.5 0.2 0.33 10.7 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|55379844|ref|YP_137694.1| - 0.19 11.6 0.2 0.35 10.8 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|55379844|ref|YP_137694.1| - 0.26 11.0 0.2 0.57 9.9 0.2 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|55379845|ref|YP_137695.1| - 3.4e-29 102.1 0.0 5.2e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|55379845|ref|YP_137695.1| - 2.9e-18 66.1 0.2 5.9e-18 65.1 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|55379845|ref|YP_137695.1| - 6.1e-07 29.5 0.1 4.6e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55379845|ref|YP_137695.1| - 7.1e-05 22.3 0.0 0.0001 21.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|55379845|ref|YP_137695.1| - 0.031 14.6 0.6 0.28 11.5 0.6 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|55379845|ref|YP_137695.1| - 0.056 13.1 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.26 gi|55379845|ref|YP_137695.1| - 0.059 13.1 0.1 1.3 8.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_29 PF13555.6 gi|55379845|ref|YP_137695.1| - 0.065 13.0 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|55379845|ref|YP_137695.1| - 0.12 12.5 0.3 0.25 11.4 0.3 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_16 PF13191.6 gi|55379845|ref|YP_137695.1| - 0.14 12.5 0.5 0.35 11.2 0.4 1.8 1 1 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|55379846|ref|YP_137696.1| - 5.3e-18 65.4 12.8 5.3e-18 65.4 12.8 2.4 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|55379846|ref|YP_137696.1| - 4.1e-05 23.5 0.0 4.1e-05 23.5 0.0 4.2 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|55379847|ref|YP_137697.1| - 5.5e-34 117.5 10.7 5.5e-34 117.5 10.7 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|55379848|ref|YP_137698.1| - 7.5e-65 219.3 3.6 1.2e-64 218.7 3.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|55379848|ref|YP_137698.1| - 7.5e-08 31.9 3.8 1.2e-07 31.2 3.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence HrpF PF06266.12 gi|55379848|ref|YP_137698.1| - 0.14 12.4 0.2 0.53 10.6 0.2 1.9 1 0 0 1 1 1 0 HrpF protein SHS2_FTSA PF02491.20 gi|55379849|ref|YP_137699.1| - 0.015 15.7 0.1 0.044 14.2 0.1 1.7 1 1 1 2 2 2 0 SHS2 domain inserted in FTSA Fer4_15 PF13459.6 gi|55379849|ref|YP_137699.1| - 0.028 15.1 0.7 0.054 14.2 0.5 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain MOSC_N PF03476.16 gi|55379850|ref|YP_137700.1| - 9.9e-08 31.9 1.6 3e-07 30.4 1.6 1.9 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|55379850|ref|YP_137700.1| - 2.8e-07 30.6 0.0 5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 MOSC domain Pro_isomerase PF00160.21 gi|55379851|ref|YP_137701.1| - 1.6e-46 158.5 0.0 1.9e-46 158.2 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Abhydrolase_1 PF00561.20 gi|55379852|ref|YP_137702.1| - 1.4e-28 100.3 0.2 2.4e-28 99.5 0.2 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|55379852|ref|YP_137702.1| - 4.9e-24 86.2 12.9 6.1e-24 85.8 12.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|55379852|ref|YP_137702.1| - 1.8e-13 50.3 0.1 3.5e-13 49.4 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|55379852|ref|YP_137702.1| - 0.096 12.2 0.0 0.88 9.1 0.0 2.3 2 1 0 2 2 2 0 Dienelactone hydrolase family PGAP1 PF07819.13 gi|55379852|ref|YP_137702.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Glycos_transf_3 PF00591.21 gi|55379853|ref|YP_137703.1| - 3.5e-32 112.0 0.0 4.7e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|55379853|ref|YP_137703.1| - 0.00046 20.0 0.2 0.0046 16.8 0.0 2.6 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain AsnC_trans_reg2 PF17805.1 gi|55379854|ref|YP_137704.1| - 6.1e-44 148.1 0.0 3.7e-21 75.1 0.0 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|55379854|ref|YP_137704.1| - 1.2e-14 53.9 0.7 2.2e-07 30.6 0.0 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|55379854|ref|YP_137704.1| - 5.4e-07 29.1 0.1 0.043 13.4 0.0 3.1 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding Response_reg PF00072.24 gi|55379855|ref|YP_137705.1| - 2.1e-19 69.7 0.3 3.7e-19 69.0 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|55379855|ref|YP_137705.1| - 2.5e-17 62.9 10.8 6.4e-17 61.6 10.8 1.7 1 0 0 1 1 1 1 HalX domain Halo_GVPC PF05465.13 gi|55379855|ref|YP_137705.1| - 0.022 15.0 3.3 0.066 13.5 3.3 1.9 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat ABC_tran_CTD PF16326.5 gi|55379855|ref|YP_137705.1| - 0.061 13.6 5.4 0.09 13.0 2.7 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain UPF0242 PF06785.11 gi|55379855|ref|YP_137705.1| - 0.072 13.2 0.4 0.1 12.7 0.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Syntaxin-6_N PF09177.11 gi|55379855|ref|YP_137705.1| - 0.14 12.8 0.7 1.2 9.8 0.3 2.1 2 0 0 2 2 2 0 Syntaxin 6, N-terminal GCHY-1 PF02649.14 gi|55379856|ref|YP_137706.1| - 9e-75 251.5 1.2 1e-74 251.3 1.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 SfsA PF03749.13 gi|55379856|ref|YP_137706.1| - 0.0086 16.0 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain TrmB PF01978.19 gi|55379857|ref|YP_137707.1| - 1.2e-21 76.4 0.2 2.2e-21 75.5 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|55379857|ref|YP_137707.1| - 0.00029 20.1 0.0 0.00045 19.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.14 gi|55379857|ref|YP_137707.1| - 0.0066 16.4 0.0 0.024 14.6 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family PLDc_2 PF13091.6 gi|55379857|ref|YP_137707.1| - 0.0099 15.8 0.1 0.087 12.7 0.0 2.4 2 1 0 2 2 2 1 PLD-like domain E2F_TDP PF02319.20 gi|55379857|ref|YP_137707.1| - 0.035 14.2 0.0 0.095 12.8 0.0 1.7 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Med2 PF11214.8 gi|55379857|ref|YP_137707.1| - 0.067 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Mediator complex subunit 2 DprA_WH PF17782.1 gi|55379857|ref|YP_137707.1| - 0.07 13.2 0.2 0.24 11.6 0.0 2.0 2 0 0 2 2 2 0 DprA winged helix domain Thioredox_DsbH PF03190.15 gi|55379858|ref|YP_137708.1| - 2.1e-19 70.1 0.0 4e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|55379858|ref|YP_137708.1| - 4.9e-10 39.5 0.0 1.1e-09 38.3 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 gi|55379858|ref|YP_137708.1| - 0.00013 21.1 0.2 0.12 11.5 0.0 2.8 1 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Thioredoxin PF00085.20 gi|55379858|ref|YP_137708.1| - 0.00081 19.3 0.0 0.0016 18.4 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55379858|ref|YP_137708.1| - 0.014 15.8 0.0 0.03 14.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain Pec_lyase PF09492.10 gi|55379858|ref|YP_137708.1| - 0.027 13.8 0.2 0.57 9.4 0.1 2.2 2 0 0 2 2 2 0 Pectic acid lyase Glyco_hydro_127 PF07944.12 gi|55379858|ref|YP_137708.1| - 0.11 11.0 0.1 9.7 4.5 0.0 2.2 2 0 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_76 PF03663.14 gi|55379858|ref|YP_137708.1| - 0.48 9.9 2.4 8.7 5.7 2.6 2.5 2 1 0 2 2 2 0 Glycosyl hydrolase family 76 p450 PF00067.22 gi|55379859|ref|YP_137709.1| - 1.8e-79 267.7 0.0 2e-79 267.5 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 FxsA PF04186.13 gi|55379860|ref|YP_137710.1| - 1.1e-29 102.8 10.3 1.4e-29 102.4 10.3 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein HTH_10 PF04967.12 gi|55379861|ref|YP_137711.1| - 0.019 14.8 0.1 0.49 10.2 0.0 2.6 2 1 0 2 2 2 0 HTH DNA binding domain TAT_signal PF10518.9 gi|55379861|ref|YP_137711.1| - 0.31 11.0 2.8 0.58 10.1 2.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence LMWPc PF01451.21 gi|55379862|ref|YP_137712.1| - 5.8e-24 85.1 0.2 1.3e-23 83.9 0.2 1.5 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF4013 PF13197.6 gi|55379863|ref|YP_137713.1| - 5.5e-24 84.9 16.0 5.5e-24 84.9 16.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Nre_N PF04894.12 gi|55379864|ref|YP_137714.1| - 8.7e-97 324.2 0.0 1.1e-96 323.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|55379864|ref|YP_137714.1| - 5e-41 139.1 0.0 9.3e-41 138.2 0.0 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal LEA_3 PF03242.13 gi|55379864|ref|YP_137714.1| - 0.14 12.9 0.1 0.44 11.3 0.1 1.8 1 0 0 1 1 1 0 Late embryogenesis abundant protein DUF2721 PF11026.8 gi|55379865|ref|YP_137715.1| - 0.043 13.7 0.7 0.043 13.7 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) 7TM-7TMR_HD PF07698.11 gi|55379865|ref|YP_137715.1| - 0.11 12.3 8.3 0.14 11.9 8.3 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase SdpI PF13630.6 gi|55379865|ref|YP_137715.1| - 3.7 7.7 6.6 13 6.0 1.1 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family IncD PF17628.2 gi|55379865|ref|YP_137715.1| - 4.3 7.1 9.5 1.4 8.7 6.3 1.7 1 1 1 2 2 2 0 Inclusion membrane protein D RVT_3 PF13456.6 gi|55379866|ref|YP_137716.1| - 5.6e-28 97.2 0.0 3.6e-27 94.6 0.0 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like RNase_H PF00075.24 gi|55379866|ref|YP_137716.1| - 2.2e-11 44.1 0.0 4.4e-11 43.2 0.0 1.5 1 1 0 1 1 1 1 RNase H ChitinaseA_N PF08329.10 gi|55379866|ref|YP_137716.1| - 0.09 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Chitinase A, N-terminal domain Mac PF12464.8 gi|55379866|ref|YP_137716.1| - 0.14 12.4 0.1 0.34 11.2 0.1 1.6 1 0 0 1 1 1 0 Maltose acetyltransferase Phage_int_SAM_4 PF13495.6 gi|55379867|ref|YP_137717.1| - 0.19 12.3 0.0 0.3 11.6 0.0 1.3 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DnaG_DnaB_bind PF08278.11 gi|55379867|ref|YP_137717.1| - 0.2 12.2 1.2 2.1 9.0 0.1 2.2 2 0 0 2 2 2 0 DNA primase DnaG DnaB-binding PadR PF03551.14 gi|55379868|ref|YP_137718.1| - 3.1e-18 65.5 0.3 4.4e-18 65.0 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|55379868|ref|YP_137718.1| - 3e-05 24.4 0.0 6.7e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|55379868|ref|YP_137718.1| - 0.0021 17.9 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) RTP PF02334.16 gi|55379868|ref|YP_137718.1| - 0.013 16.1 0.1 0.019 15.6 0.1 1.2 1 0 0 1 1 1 0 Replication terminator protein HTH_45 PF14947.6 gi|55379868|ref|YP_137718.1| - 0.02 14.9 0.1 0.03 14.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|55379868|ref|YP_137718.1| - 0.057 13.2 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.19 gi|55379868|ref|YP_137718.1| - 0.075 13.2 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.19 gi|55379869|ref|YP_137719.1| - 2.3e-51 173.7 1.5 2.7e-51 173.6 1.5 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phosphodiest PF01663.22 gi|55379871|ref|YP_137721.1| - 6.7e-59 200.3 0.9 7.7e-59 200.1 0.9 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.9 gi|55379871|ref|YP_137721.1| - 0.12 12.6 0.1 0.24 11.6 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding domain Sulfatase PF00884.23 gi|55379871|ref|YP_137721.1| - 0.5 9.7 4.7 0.45 9.9 1.3 2.3 3 0 0 3 3 3 0 Sulfatase Tubulin PF00091.25 gi|55379872|ref|YP_137722.1| - 4.7e-27 95.5 0.1 8.4e-27 94.6 0.1 1.4 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|55379872|ref|YP_137722.1| - 0.00013 21.3 0.3 0.00046 19.5 0.1 2.0 2 0 0 2 2 2 1 Tubulin like HEM4 PF02602.15 gi|55379872|ref|YP_137722.1| - 0.0037 16.7 0.2 0.0062 15.9 0.2 1.3 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HTH_24 PF13412.6 gi|55379873|ref|YP_137723.1| - 4.9e-07 29.2 0.0 7.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55379873|ref|YP_137723.1| - 5.3e-05 23.0 0.1 7.4e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|55379873|ref|YP_137723.1| - 0.00066 19.3 0.1 0.00091 18.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|55379873|ref|YP_137723.1| - 0.0019 18.2 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|55379873|ref|YP_137723.1| - 0.0029 17.5 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|55379873|ref|YP_137723.1| - 0.0041 17.0 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55379873|ref|YP_137723.1| - 0.0062 16.5 0.0 0.007 16.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|55379873|ref|YP_137723.1| - 0.0097 15.8 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|55379873|ref|YP_137723.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|55379873|ref|YP_137723.1| - 0.024 14.5 0.1 0.031 14.2 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|55379873|ref|YP_137723.1| - 0.043 13.5 0.1 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|55379873|ref|YP_137723.1| - 0.045 13.6 0.1 0.064 13.1 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|55379873|ref|YP_137723.1| - 0.065 13.6 0.0 0.085 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_43 PF09904.9 gi|55379873|ref|YP_137723.1| - 0.17 11.9 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Polyketide_cyc2 PF10604.9 gi|55379874|ref|YP_137724.1| - 1.1e-19 71.2 1.2 1.4e-19 70.7 1.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|55379874|ref|YP_137724.1| - 5.2e-07 29.9 0.2 1.2e-06 28.7 0.2 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|55379874|ref|YP_137724.1| - 0.025 14.8 0.1 0.041 14.1 0.1 1.4 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Copper-bind PF00127.20 gi|55379875|ref|YP_137725.1| - 3.5e-15 56.2 0.1 1.2e-14 54.6 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|55379875|ref|YP_137725.1| - 0.0018 18.1 11.1 0.0018 18.1 11.1 2.8 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|55379875|ref|YP_137725.1| - 0.04 14.0 0.0 0.067 13.3 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain Mem_trans PF03547.18 gi|55379877|ref|YP_137727.1| - 0.027 12.9 3.8 0.031 12.7 3.8 1.0 1 0 0 1 1 1 0 Membrane transport protein B12D PF06522.11 gi|55379877|ref|YP_137727.1| - 0.21 11.4 2.7 0.31 10.8 2.7 1.4 1 0 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit AMP-binding PF00501.28 gi|55379878|ref|YP_137728.1| - 0.00019 20.2 0.0 0.11 11.0 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme MazG PF03819.17 gi|55379879|ref|YP_137729.1| - 6.2e-05 23.1 0.2 0.0065 16.6 0.1 2.1 1 1 1 2 2 2 2 MazG nucleotide pyrophosphohydrolase domain DnaJ_C PF01556.18 gi|55379880|ref|YP_137730.1| - 4.1e-44 150.3 0.0 5.7e-44 149.8 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|55379880|ref|YP_137730.1| - 5.4e-24 84.1 5.1 1e-23 83.2 3.8 2.1 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|55379880|ref|YP_137730.1| - 5.8e-13 49.0 17.9 1.3e-12 47.9 17.9 1.6 1 0 0 1 1 1 1 DnaJ central domain DUF5351 PF17302.2 gi|55379880|ref|YP_137730.1| - 0.00034 20.7 19.6 0.08 13.1 2.0 4.7 4 0 0 4 4 4 2 Family of unknown function (DUF5351) Anti-TRAP PF15777.5 gi|55379880|ref|YP_137730.1| - 0.0019 18.1 16.2 0.023 14.6 6.6 2.6 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein RPT PF13446.6 gi|55379880|ref|YP_137730.1| - 0.01 15.7 0.2 0.023 14.6 0.2 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein Caldesmon PF02029.15 gi|55379880|ref|YP_137730.1| - 0.011 14.5 3.0 0.018 13.8 3.0 1.2 1 0 0 1 1 1 0 Caldesmon A2L_zn_ribbon PF08792.10 gi|55379880|ref|YP_137730.1| - 0.02 14.6 5.9 0.068 12.9 0.1 3.3 2 1 1 3 3 3 0 A2L zinc ribbon domain HypA PF01155.19 gi|55379880|ref|YP_137730.1| - 0.39 10.8 10.0 2 8.5 2.6 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CPP1-like PF11833.8 gi|55379880|ref|YP_137730.1| - 0.5 10.0 1.0 10 5.7 0.6 2.2 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like GRP PF07172.11 gi|55379880|ref|YP_137730.1| - 0.66 10.7 18.1 2.6 8.8 18.1 2.1 1 0 0 1 1 1 0 Glycine rich protein family DZR PF12773.7 gi|55379880|ref|YP_137730.1| - 8.9 6.4 13.1 49 4.1 13.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon Pilin_N PF07790.11 gi|55379881|ref|YP_137731.1| - 0.00013 22.8 0.2 0.0013 19.6 0.1 2.0 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF1521 PF07481.11 gi|55379881|ref|YP_137731.1| - 0.039 14.0 1.0 0.066 13.2 0.2 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1521) HalOD1 PF18545.1 gi|55379882|ref|YP_137732.1| - 1.3e-19 70.2 0.7 1.8e-19 69.8 0.7 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TrmB PF01978.19 gi|55379883|ref|YP_137733.1| - 9.6e-19 67.0 0.1 3.1e-18 65.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55379883|ref|YP_137733.1| - 0.0046 16.8 0.1 0.089 12.7 0.0 2.5 2 0 0 2 2 2 1 MarR family E2F_TDP PF02319.20 gi|55379883|ref|YP_137733.1| - 0.021 14.9 0.0 0.069 13.2 0.0 1.9 1 1 1 2 2 2 0 E2F/DP family winged-helix DNA-binding domain Tup_N PF08581.10 gi|55379883|ref|YP_137733.1| - 0.043 14.1 0.2 0.12 12.7 0.1 1.8 2 0 0 2 2 2 0 Tup N-terminal DUF2250 PF10007.9 gi|55379883|ref|YP_137733.1| - 0.049 13.7 0.0 0.29 11.3 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|55379883|ref|YP_137733.1| - 0.055 14.0 0.2 1.2 9.7 0.0 3.0 3 0 0 3 3 3 0 Winged helix DNA-binding domain GntR PF00392.21 gi|55379883|ref|YP_137733.1| - 0.07 12.8 0.0 0.25 11.0 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family VirB7 PF17413.2 gi|55379884|ref|YP_137734.1| - 0.049 12.9 0.1 0.082 12.2 0.1 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein virB7 HSP70 PF00012.20 gi|55379885|ref|YP_137735.1| - 3.8e-244 811.4 19.9 3.5e-242 804.9 19.9 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|55379885|ref|YP_137735.1| - 2e-20 72.9 0.6 2e-20 72.9 0.6 2.4 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|55379885|ref|YP_137735.1| - 0.00086 18.6 0.1 0.0075 15.6 0.0 2.5 3 0 0 3 3 3 1 StbA protein FGGY_C PF02782.16 gi|55379885|ref|YP_137735.1| - 0.0076 16.0 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FIVAR PF07554.13 gi|55379885|ref|YP_137735.1| - 1.3 9.8 8.5 0.13 13.0 2.0 2.9 2 0 0 2 2 2 0 FIVAR domain DUF4446 PF14584.6 gi|55379885|ref|YP_137735.1| - 5.4 7.0 5.8 1.5 8.8 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Cwf_Cwc_15 PF04889.12 gi|55379885|ref|YP_137735.1| - 9.1 5.9 21.4 33 4.1 21.4 2.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein GrpE PF01025.19 gi|55379886|ref|YP_137736.1| - 8.3e-42 142.7 3.6 1.3e-41 142.0 3.6 1.3 1 0 0 1 1 1 1 GrpE OmpH PF03938.14 gi|55379886|ref|YP_137736.1| - 3.4e-05 24.2 2.7 5.6e-05 23.5 2.7 1.4 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Fez1 PF06818.15 gi|55379886|ref|YP_137736.1| - 0.00022 21.7 2.8 0.00032 21.2 2.8 1.3 1 0 0 1 1 1 1 Fez1 PsbQ PF05757.11 gi|55379886|ref|YP_137736.1| - 0.0007 19.4 3.0 0.0026 17.5 3.0 2.0 1 1 0 1 1 1 1 Oxygen evolving enhancer protein 3 (PsbQ) Spc7 PF08317.11 gi|55379886|ref|YP_137736.1| - 0.00078 18.4 6.4 0.001 18.1 6.4 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF641 PF04859.12 gi|55379886|ref|YP_137736.1| - 0.001 19.4 0.7 0.0024 18.2 0.7 1.6 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) Phage_tail_NK PF16532.5 gi|55379886|ref|YP_137736.1| - 0.0018 17.9 0.1 0.003 17.2 0.1 1.2 1 0 0 1 1 1 1 Sf6-type phage tail needle knob or tip of some Caudovirales FAM76 PF16046.5 gi|55379886|ref|YP_137736.1| - 0.0029 17.0 5.1 0.0037 16.7 5.1 1.1 1 0 0 1 1 1 1 FAM76 protein Bacillus_HBL PF05791.11 gi|55379886|ref|YP_137736.1| - 0.0056 16.5 2.4 0.013 15.4 2.3 1.7 1 1 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) Fmp27_WPPW PF10359.9 gi|55379886|ref|YP_137736.1| - 0.0058 15.5 2.7 0.0065 15.4 2.7 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Exonuc_VII_L PF02601.15 gi|55379886|ref|YP_137736.1| - 0.011 15.3 1.1 0.013 15.1 1.1 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit HMMR_N PF15905.5 gi|55379886|ref|YP_137736.1| - 0.013 15.0 8.1 0.015 14.8 8.1 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal FliJ PF02050.16 gi|55379886|ref|YP_137736.1| - 0.014 15.6 7.9 0.028 14.6 7.9 1.5 1 0 0 1 1 1 0 Flagellar FliJ protein DUF812 PF05667.11 gi|55379886|ref|YP_137736.1| - 0.017 14.1 8.9 0.021 13.7 8.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) YscO PF07321.12 gi|55379886|ref|YP_137736.1| - 0.019 14.9 9.2 0.019 14.9 9.2 1.8 2 0 0 2 2 1 0 Type III secretion protein YscO FliD_C PF07195.12 gi|55379886|ref|YP_137736.1| - 0.022 14.2 1.0 0.032 13.7 0.7 1.4 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Spectrin PF00435.21 gi|55379886|ref|YP_137736.1| - 0.023 15.2 9.6 0.55 10.7 0.5 2.6 1 1 1 2 2 2 0 Spectrin repeat Atg14 PF10186.9 gi|55379886|ref|YP_137736.1| - 0.027 13.6 4.0 0.035 13.2 4.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Med9 PF07544.13 gi|55379886|ref|YP_137736.1| - 0.028 14.5 8.6 0.031 14.4 4.7 2.8 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 OrfB_IS605 PF01385.19 gi|55379886|ref|YP_137736.1| - 0.029 14.6 2.3 0.046 13.9 2.3 1.3 1 0 0 1 1 1 0 Probable transposase UPF0242 PF06785.11 gi|55379886|ref|YP_137736.1| - 0.03 14.4 7.8 0.036 14.2 7.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ISG65-75 PF11727.8 gi|55379886|ref|YP_137736.1| - 0.031 13.5 1.2 0.056 12.7 1.2 1.4 1 0 0 1 1 1 0 Invariant surface glycoprotein Cluap1 PF10234.9 gi|55379886|ref|YP_137736.1| - 0.039 13.4 5.2 0.056 12.8 4.9 1.4 1 1 0 1 1 1 0 Clusterin-associated protein-1 Pox_A_type_inc PF04508.12 gi|55379886|ref|YP_137736.1| - 0.06 13.2 0.5 0.06 13.2 0.5 2.6 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat YabA PF06156.13 gi|55379886|ref|YP_137736.1| - 0.062 13.9 4.3 0.11 13.1 4.3 1.4 1 0 0 1 1 1 0 Initiation control protein YabA DUF16 PF01519.16 gi|55379886|ref|YP_137736.1| - 0.066 13.7 7.5 0.14 12.6 7.6 1.7 1 1 0 1 1 1 0 Protein of unknown function DUF16 HlyD_2 PF12700.7 gi|55379886|ref|YP_137736.1| - 0.092 11.5 2.7 0.12 11.1 2.7 1.1 1 0 0 1 1 1 0 HlyD family secretion protein BshC PF10079.9 gi|55379886|ref|YP_137736.1| - 0.092 11.5 3.1 0.12 11.1 3.1 1.1 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC Golgin_A5 PF09787.9 gi|55379886|ref|YP_137736.1| - 0.11 11.9 8.9 0.14 11.6 8.9 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 NPV_P10 PF05531.12 gi|55379886|ref|YP_137736.1| - 0.14 12.7 2.9 0.74 10.3 2.9 2.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein VitD-bind_III PF09164.10 gi|55379886|ref|YP_137736.1| - 0.15 12.1 1.2 0.36 10.9 1.2 1.6 1 0 0 1 1 1 0 Vitamin D binding protein, domain III Surfac_D-trimer PF09006.11 gi|55379886|ref|YP_137736.1| - 0.16 11.9 1.8 4.7 7.2 1.8 2.3 1 1 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation FlaC_arch PF05377.11 gi|55379886|ref|YP_137736.1| - 0.21 12.0 3.3 0.39 11.1 1.0 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Macoilin PF09726.9 gi|55379886|ref|YP_137736.1| - 0.21 10.1 6.1 0.23 9.9 6.1 1.1 1 0 0 1 1 1 0 Macoilin family SlyX PF04102.12 gi|55379886|ref|YP_137736.1| - 0.35 11.5 11.5 0.098 13.3 7.2 2.4 2 1 0 2 2 1 0 SlyX TMPIT PF07851.13 gi|55379886|ref|YP_137736.1| - 0.38 10.0 1.5 0.5 9.6 1.5 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF3584 PF12128.8 gi|55379886|ref|YP_137736.1| - 0.56 7.7 14.8 0.11 10.0 11.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4250 PF14056.6 gi|55379886|ref|YP_137736.1| - 0.56 10.2 2.4 0.55 10.2 0.4 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF4250) TPR_MLP1_2 PF07926.12 gi|55379886|ref|YP_137736.1| - 0.85 9.7 14.8 0.035 14.2 8.2 1.9 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein XhlA PF10779.9 gi|55379886|ref|YP_137736.1| - 0.9 9.8 3.9 2.4 8.4 3.3 2.1 1 1 1 2 2 2 0 Haemolysin XhlA CENP-Q PF13094.6 gi|55379886|ref|YP_137736.1| - 0.98 9.6 14.8 0.6 10.3 12.9 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Fib_alpha PF08702.10 gi|55379886|ref|YP_137736.1| - 1 9.6 5.2 2.5 8.3 5.1 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family CorA PF01544.18 gi|55379886|ref|YP_137736.1| - 1.6 8.0 8.5 2.3 7.4 8.5 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein LMBR1 PF04791.16 gi|55379886|ref|YP_137736.1| - 1.6 7.5 4.5 2 7.2 4.5 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Spc24 PF08286.11 gi|55379886|ref|YP_137736.1| - 2 8.7 7.7 7 7.0 7.7 2.1 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Phage_GP20 PF06810.11 gi|55379886|ref|YP_137736.1| - 2.8 7.7 14.2 0.07 12.9 6.7 2.1 2 1 1 3 3 3 0 Phage minor structural protein GP20 DivIC PF04977.15 gi|55379886|ref|YP_137736.1| - 4.3 7.2 8.2 7 6.5 0.6 2.5 1 1 1 2 2 2 0 Septum formation initiator DASH_Spc19 PF08287.11 gi|55379886|ref|YP_137736.1| - 5.1 7.0 13.6 0.32 10.9 8.6 1.5 2 0 0 2 2 1 0 Spc19 TruB_C_2 PF16198.5 gi|55379888|ref|YP_137738.1| - 5.5e-22 77.7 0.2 1.2e-21 76.6 0.2 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|55379888|ref|YP_137738.1| - 7.7e-22 78.3 0.1 9.4e-13 48.8 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.12 gi|55379888|ref|YP_137738.1| - 6.4e-08 32.6 0.0 1.4e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|55379888|ref|YP_137738.1| - 0.0084 16.1 0.1 0.019 14.9 0.1 1.6 1 1 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.6 gi|55379889|ref|YP_137739.1| - 6.1e-21 75.4 0.9 7.3e-19 68.6 0.9 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|55379889|ref|YP_137739.1| - 7.1e-20 71.9 0.0 9.3e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|55379889|ref|YP_137739.1| - 1.4e-13 51.4 0.0 1.8e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|55379889|ref|YP_137739.1| - 1.8e-13 50.7 1.5 3.6e-08 33.4 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|55379889|ref|YP_137739.1| - 3.1e-10 40.4 0.2 2.2e-08 34.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|55379889|ref|YP_137739.1| - 3.6e-07 30.5 0.5 1.8e-06 28.1 0.5 1.9 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.22 gi|55379889|ref|YP_137739.1| - 1.8e-05 24.9 0.0 3e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_16 PF13191.6 gi|55379889|ref|YP_137739.1| - 8.7e-05 23.0 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|55379889|ref|YP_137739.1| - 0.00011 22.5 0.0 0.00016 22.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|55379889|ref|YP_137739.1| - 0.00017 21.5 0.0 0.0016 18.3 0.0 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase NACHT PF05729.12 gi|55379889|ref|YP_137739.1| - 0.00026 20.9 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|55379889|ref|YP_137739.1| - 0.00053 19.8 0.6 0.085 12.6 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|55379889|ref|YP_137739.1| - 0.0013 19.1 0.0 0.0018 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55379889|ref|YP_137739.1| - 0.0024 18.3 0.0 0.0036 17.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|55379889|ref|YP_137739.1| - 0.0025 18.2 0.0 0.0044 17.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase PRK PF00485.18 gi|55379889|ref|YP_137739.1| - 0.0069 16.1 0.1 0.024 14.4 0.0 1.9 2 1 1 3 3 3 1 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.27 gi|55379889|ref|YP_137739.1| - 0.011 16.3 0.0 0.014 15.9 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.6 gi|55379889|ref|YP_137739.1| - 0.012 16.2 0.1 0.017 15.6 0.1 1.3 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|55379889|ref|YP_137739.1| - 0.019 15.0 0.0 0.043 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CoaE PF01121.20 gi|55379889|ref|YP_137739.1| - 0.019 14.6 0.1 0.16 11.7 0.0 2.0 1 1 1 2 2 2 0 Dephospho-CoA kinase T2SSE PF00437.20 gi|55379889|ref|YP_137739.1| - 0.031 13.4 0.1 0.049 12.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.17 gi|55379889|ref|YP_137739.1| - 0.033 14.0 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|55379889|ref|YP_137739.1| - 0.038 13.9 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|55379889|ref|YP_137739.1| - 0.04 13.1 0.0 0.061 12.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KTI12 PF08433.10 gi|55379889|ref|YP_137739.1| - 0.043 13.3 0.0 0.064 12.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_29 PF13555.6 gi|55379889|ref|YP_137739.1| - 0.046 13.5 0.1 0.13 12.0 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|55379889|ref|YP_137739.1| - 0.06 13.1 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TsaE PF02367.17 gi|55379889|ref|YP_137739.1| - 0.065 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|55379889|ref|YP_137739.1| - 0.079 12.2 0.1 0.14 11.5 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|55379889|ref|YP_137739.1| - 0.098 12.2 0.8 0.23 11.0 0.8 1.8 1 1 0 1 1 1 0 AAA domain CobU PF02283.16 gi|55379889|ref|YP_137739.1| - 0.1 12.1 0.1 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase APS_kinase PF01583.20 gi|55379889|ref|YP_137739.1| - 0.1 12.5 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|55379889|ref|YP_137739.1| - 0.15 11.8 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|55379889|ref|YP_137739.1| - 0.16 12.1 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Thymidylate_kin PF02223.17 gi|55379889|ref|YP_137739.1| - 0.17 11.5 0.4 2.9 7.5 0.0 2.3 1 1 2 3 3 3 0 Thymidylate kinase DUF87 PF01935.17 gi|55379889|ref|YP_137739.1| - 0.29 11.2 1.3 2 8.4 0.1 2.4 2 1 1 3 3 3 0 Helicase HerA, central domain EMC3_TMCO1 PF01956.16 gi|55379890|ref|YP_137740.1| - 3.2e-46 157.2 0.5 3.8e-46 156.9 0.5 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|55379890|ref|YP_137740.1| - 3.3e-05 23.8 0.1 5.6e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 60Kd inner membrane protein Phage_Gp23 PF10669.9 gi|55379890|ref|YP_137740.1| - 0.014 15.8 0.2 0.021 15.2 0.2 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) SPT6_acidic PF14632.6 gi|55379890|ref|YP_137740.1| - 0.03 14.9 4.2 0.03 14.9 4.2 2.2 2 0 0 2 2 2 0 Acidic N-terminal SPT6 DUF2897 PF11446.8 gi|55379890|ref|YP_137740.1| - 0.28 11.1 0.8 0.91 9.5 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2897) ADK PF00406.22 gi|55379891|ref|YP_137741.1| - 1.1e-41 142.5 0.0 1.4e-41 142.1 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|55379891|ref|YP_137741.1| - 1.9e-22 80.1 0.5 8.3e-22 78.1 0.0 1.9 1 1 1 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|55379891|ref|YP_137741.1| - 1.5e-16 60.1 4.0 2.6e-16 59.3 4.0 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|55379891|ref|YP_137741.1| - 1.2e-08 35.5 0.0 2.3e-08 34.6 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|55379891|ref|YP_137741.1| - 1.7e-07 31.5 0.0 3.2e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain Ploopntkinase3 PF18751.1 gi|55379891|ref|YP_137741.1| - 0.0042 17.0 0.0 0.013 15.4 0.0 1.8 2 1 0 2 2 2 1 P-loop Nucleotide Kinase3 RuvB_N PF05496.12 gi|55379891|ref|YP_137741.1| - 0.016 14.9 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Cytidylate_kin PF02224.18 gi|55379891|ref|YP_137741.1| - 0.022 14.5 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase SRP54 PF00448.22 gi|55379891|ref|YP_137741.1| - 0.037 13.6 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain zf-C4_Topoisom PF01396.19 gi|55379891|ref|YP_137741.1| - 0.042 13.6 0.3 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.7 gi|55379891|ref|YP_137741.1| - 0.042 14.3 0.2 1.8 9.0 0.0 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 AAA_24 PF13479.6 gi|55379891|ref|YP_137741.1| - 0.047 13.4 0.0 0.13 12.0 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|55379891|ref|YP_137741.1| - 0.05 13.9 0.1 0.086 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain DZR PF12773.7 gi|55379891|ref|YP_137741.1| - 0.058 13.4 0.8 0.13 12.3 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|55379891|ref|YP_137741.1| - 0.07 13.3 1.4 0.13 12.4 1.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain AAA_5 PF07728.14 gi|55379891|ref|YP_137741.1| - 0.089 12.8 0.0 0.15 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) HypA PF01155.19 gi|55379891|ref|YP_137741.1| - 0.094 12.7 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1451 PF07295.11 gi|55379891|ref|YP_137741.1| - 0.095 12.7 1.4 0.12 12.4 0.5 1.6 2 0 0 2 2 2 0 Zinc-ribbon containing domain Nudix_N_2 PF14803.6 gi|55379891|ref|YP_137741.1| - 0.27 11.2 2.5 9.6 6.2 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|55379891|ref|YP_137741.1| - 0.55 9.8 6.9 1.3 8.6 6.8 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|55379891|ref|YP_137741.1| - 0.61 9.6 2.6 13 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|55379891|ref|YP_137741.1| - 1.4 8.9 6.7 0.38 10.7 0.5 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 AhpC-TSA PF00578.21 gi|55379892|ref|YP_137742.1| - 4.2e-27 94.5 0.0 5.2e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55379892|ref|YP_137742.1| - 4.2e-14 52.5 0.0 5.3e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|55379892|ref|YP_137742.1| - 2.2e-06 27.8 0.0 2.8e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme HATPase_c PF02518.26 gi|55379893|ref|YP_137743.1| - 2.8e-10 40.7 0.0 5.6e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|55379893|ref|YP_137743.1| - 2.4e-07 30.8 0.0 4.7e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|55379893|ref|YP_137743.1| - 5e-07 29.7 0.0 1.4e-06 28.2 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|55379893|ref|YP_137743.1| - 5.7e-07 29.7 0.0 1.6e-06 28.3 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|55379893|ref|YP_137743.1| - 5.2e-06 26.7 0.0 1e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|55379893|ref|YP_137743.1| - 9.4e-06 25.8 0.0 2.3e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|55379893|ref|YP_137743.1| - 9e-05 22.4 0.0 0.00021 21.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|55379893|ref|YP_137743.1| - 0.037 14.1 0.4 0.11 12.5 0.4 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HisKA_7TM PF16927.5 gi|55379894|ref|YP_137744.1| - 2.6e-33 115.9 13.8 3.8e-33 115.4 13.8 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|55379894|ref|YP_137744.1| - 6.4e-14 52.4 0.0 1.3e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|55379894|ref|YP_137744.1| - 2.5e-06 27.4 0.0 7.6e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|55379894|ref|YP_137744.1| - 6.5e-05 22.8 0.1 0.00077 19.4 0.0 2.7 1 1 1 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|55379894|ref|YP_137744.1| - 0.00019 21.3 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|55379894|ref|YP_137744.1| - 0.00019 21.0 0.2 0.00019 21.0 0.2 2.0 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_4 PF08448.10 gi|55379894|ref|YP_137744.1| - 0.00059 20.1 0.6 0.02 15.2 0.6 3.0 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|55379894|ref|YP_137744.1| - 0.0016 18.5 0.0 0.0056 16.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold Gp_dh_C PF02800.20 gi|55379894|ref|YP_137744.1| - 0.06 12.9 0.1 0.16 11.5 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HATPase_c_5 PF14501.6 gi|55379894|ref|YP_137744.1| - 0.19 11.7 0.0 0.41 10.6 0.0 1.5 1 0 0 1 1 1 0 GHKL domain GHMP_kinases_N PF00288.26 gi|55379895|ref|YP_137745.1| - 3e-12 46.6 1.6 9.6e-12 45.0 1.1 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|55379895|ref|YP_137745.1| - 7.5e-09 35.8 0.0 1.7e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Amino_oxidase PF01593.24 gi|55379896|ref|YP_137746.1| - 9.3e-36 124.1 0.1 1.1e-35 123.8 0.1 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|55379896|ref|YP_137746.1| - 1.9e-14 53.7 0.1 5.9e-14 52.0 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55379896|ref|YP_137746.1| - 4.5e-11 42.9 4.5 1.6e-10 41.1 4.5 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|55379896|ref|YP_137746.1| - 9.8e-07 28.3 0.5 0.00013 21.3 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55379896|ref|YP_137746.1| - 7.4e-06 25.3 1.7 1.4e-05 24.4 1.7 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|55379896|ref|YP_137746.1| - 0.0002 21.9 0.1 0.004 17.7 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|55379896|ref|YP_137746.1| - 0.00047 19.6 1.0 0.00056 19.4 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|55379896|ref|YP_137746.1| - 0.001 18.3 0.2 0.0021 17.2 0.2 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|55379896|ref|YP_137746.1| - 0.0011 17.8 0.4 0.002 16.9 0.4 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|55379896|ref|YP_137746.1| - 0.0032 16.8 0.4 0.022 14.0 0.3 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.6 gi|55379896|ref|YP_137746.1| - 0.004 17.2 1.4 0.14 12.2 0.2 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding FMO-like PF00743.19 gi|55379896|ref|YP_137746.1| - 0.01 14.3 0.0 0.015 13.8 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like 3HCDH_N PF02737.18 gi|55379896|ref|YP_137746.1| - 0.022 14.7 0.3 0.039 13.8 0.0 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|55379896|ref|YP_137746.1| - 0.046 12.8 0.0 0.075 12.1 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|55379896|ref|YP_137746.1| - 0.047 13.0 4.3 0.074 12.3 0.1 2.5 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|55379896|ref|YP_137746.1| - 0.049 12.9 0.6 0.087 12.0 0.6 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|55379896|ref|YP_137746.1| - 0.079 12.2 0.1 0.59 9.3 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|55379896|ref|YP_137746.1| - 0.16 12.1 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|55379896|ref|YP_137746.1| - 0.25 11.9 0.6 3.2 8.4 0.2 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|55379897|ref|YP_137748.1| - 7e-47 160.1 0.2 8.7e-47 159.8 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|55379897|ref|YP_137748.1| - 2.7e-10 40.0 0.0 9.9e-10 38.2 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55379897|ref|YP_137748.1| - 2.5e-09 37.6 0.4 8e-06 26.3 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|55379897|ref|YP_137748.1| - 4.6e-09 36.1 0.1 4.7e-07 29.6 0.0 3.4 4 0 0 4 4 4 1 Rubredoxin NAD+ reductase C-terminal domain HI0933_like PF03486.14 gi|55379897|ref|YP_137748.1| - 0.00025 19.9 0.1 0.071 11.8 0.0 2.6 4 0 0 4 4 4 2 HI0933-like protein Reductase_C PF14759.6 gi|55379897|ref|YP_137748.1| - 0.023 15.3 0.0 0.056 14.0 0.0 1.7 1 0 0 1 1 1 0 Reductase C-terminal NAD_binding_8 PF13450.6 gi|55379897|ref|YP_137748.1| - 0.024 14.9 2.8 0.89 9.8 0.0 3.1 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|55379897|ref|YP_137748.1| - 0.04 13.2 0.0 0.22 10.8 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase DAO PF01266.24 gi|55379897|ref|YP_137748.1| - 0.1 12.1 3.4 6.3 6.3 0.1 3.4 2 1 0 4 4 4 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|55379897|ref|YP_137748.1| - 1 8.3 8.6 1.8 7.5 0.1 3.6 3 1 0 4 4 4 0 FAD binding domain GPDPase_memb PF10110.9 gi|55379901|ref|YP_137751.1| - 0.017 13.9 11.9 0.0076 15.1 9.6 1.5 2 0 0 2 2 2 0 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.11 gi|55379901|ref|YP_137751.1| - 0.21 11.3 13.9 0.37 10.5 13.8 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0259) DUF1218 PF06749.12 gi|55379901|ref|YP_137751.1| - 5.5 7.6 10.3 3.3 8.3 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1218) DUF4191 PF13829.6 gi|55379901|ref|YP_137751.1| - 5.7 6.2 11.2 8.2 5.7 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF4346 PF14251.6 gi|55379904|ref|YP_137754.1| - 0.067 13.2 0.0 0.081 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) DEK_C PF08766.11 gi|55379904|ref|YP_137754.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 DEK C terminal domain CPSase_L_D2 PF02786.17 gi|55379905|ref|YP_137755.1| - 2.9e-93 311.2 0.1 1.1e-57 195.0 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|55379905|ref|YP_137755.1| - 3.1e-27 95.3 0.0 6.8e-27 94.2 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|55379905|ref|YP_137755.1| - 3.4e-13 49.5 0.0 2.7e-06 27.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|55379905|ref|YP_137755.1| - 4.1e-13 49.3 0.0 5.2e-08 32.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|55379905|ref|YP_137755.1| - 5.6e-12 45.6 0.0 6.5e-08 32.3 0.0 2.9 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|55379905|ref|YP_137755.1| - 3.8e-09 36.8 0.3 0.00029 20.9 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|55379905|ref|YP_137755.1| - 0.0047 16.7 0.3 0.026 14.3 0.0 2.4 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|55379905|ref|YP_137755.1| - 0.014 14.9 0.1 0.87 9.0 0.0 3.3 2 1 1 3 3 3 0 ATP-grasp domain B12-binding PF02310.19 gi|55379905|ref|YP_137755.1| - 0.02 14.9 1.0 26 4.9 0.1 4.2 3 0 0 3 3 3 0 B12 binding domain PAS_4 PF08448.10 gi|55379906|ref|YP_137756.1| - 1.9e-50 169.7 13.2 8.3e-20 71.1 0.1 6.1 5 1 1 6 6 6 4 PAS fold PAS_3 PF08447.12 gi|55379906|ref|YP_137756.1| - 1e-35 121.8 1.1 2e-24 85.7 0.2 4.8 4 1 0 4 4 4 4 PAS fold PAS PF00989.25 gi|55379906|ref|YP_137756.1| - 1e-23 83.5 1.9 1.5e-08 34.7 0.0 5.1 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|55379906|ref|YP_137756.1| - 1e-21 77.1 0.6 9e-06 25.9 0.0 5.4 5 0 0 5 5 5 4 PAS domain Response_reg PF00072.24 gi|55379906|ref|YP_137756.1| - 2.7e-20 72.6 0.0 1.5e-19 70.3 0.0 2.3 2 0 0 2 2 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|55379906|ref|YP_137756.1| - 1.1e-17 64.5 0.0 2.7e-17 63.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|55379906|ref|YP_137756.1| - 7.6e-16 57.7 0.1 0.0028 17.6 0.0 5.0 4 0 0 4 4 4 3 PAS domain HisKA PF00512.25 gi|55379906|ref|YP_137756.1| - 1e-12 47.9 1.1 4.5e-12 45.8 0.1 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|55379906|ref|YP_137756.1| - 1e-11 45.3 1.4 4.7e-11 43.1 0.9 2.6 3 0 0 3 3 1 1 GAF domain GAF_3 PF13492.6 gi|55379906|ref|YP_137756.1| - 4e-06 27.2 0.1 1.6e-05 25.3 0.1 2.1 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.6 gi|55379906|ref|YP_137756.1| - 3.1e-05 24.5 0.0 0.0015 19.1 0.0 3.1 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|55379906|ref|YP_137756.1| - 3.5e-05 24.1 1.8 0.00015 22.0 0.0 2.8 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF PF01590.26 gi|55379906|ref|YP_137756.1| - 9.1e-05 23.1 0.3 0.00078 20.1 0.1 2.5 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|55379906|ref|YP_137756.1| - 0.077 13.0 0.0 0.26 11.2 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|55379906|ref|YP_137756.1| - 0.085 13.0 1.6 1.6 8.9 0.1 3.9 3 2 0 3 3 3 0 PAS fold HATPase_c_3 PF13589.6 gi|55379906|ref|YP_137756.1| - 0.13 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Methyltransf_24 PF13578.6 gi|55379906|ref|YP_137756.1| - 0.68 11.0 4.2 0.93 10.5 0.0 3.4 4 1 0 4 4 3 0 Methyltransferase domain bPH_3 PF14470.6 gi|55379907|ref|YP_137757.1| - 0.0013 19.0 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain GATase PF00117.28 gi|55379908|ref|YP_137758.1| - 9e-35 120.2 0.0 1.2e-34 119.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|55379908|ref|YP_137758.1| - 5.2e-34 116.8 0.0 1.6e-33 115.2 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|55379908|ref|YP_137758.1| - 5.5e-05 23.0 0.2 0.031 14.0 0.2 2.3 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|55379908|ref|YP_137758.1| - 0.0072 16.2 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family Pro-kuma_activ PF09286.11 gi|55379908|ref|YP_137758.1| - 0.015 15.6 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_AsnC-type PF13404.6 gi|55379909|ref|YP_137759.1| - 9.7e-19 66.9 1.6 1.2e-17 63.5 1.2 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|55379909|ref|YP_137759.1| - 1.5e-17 62.9 0.1 3.2e-17 61.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|55379909|ref|YP_137759.1| - 1.2e-10 41.1 1.1 2.1e-10 40.4 1.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|55379909|ref|YP_137759.1| - 1.2e-06 28.5 0.2 3e-06 27.2 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55379909|ref|YP_137759.1| - 4.9e-05 23.1 0.2 0.00017 21.4 0.2 1.8 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|55379909|ref|YP_137759.1| - 0.00017 21.2 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|55379909|ref|YP_137759.1| - 0.0002 21.2 0.0 0.00036 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|55379909|ref|YP_137759.1| - 0.00028 20.4 0.1 0.00047 19.6 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 NapD PF03927.13 gi|55379909|ref|YP_137759.1| - 0.00031 20.7 2.1 0.00058 19.9 2.1 1.4 1 0 0 1 1 1 1 NapD protein HTH_IclR PF09339.10 gi|55379909|ref|YP_137759.1| - 0.001 18.8 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|55379909|ref|YP_137759.1| - 0.0024 17.6 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|55379909|ref|YP_137759.1| - 0.0027 17.6 0.0 0.0045 16.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|55379909|ref|YP_137759.1| - 0.003 16.9 1.7 0.0032 16.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|55379909|ref|YP_137759.1| - 0.0044 16.9 0.1 0.058 13.3 0.0 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|55379909|ref|YP_137759.1| - 0.0069 16.1 0.2 0.013 15.3 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_38 PF13936.6 gi|55379909|ref|YP_137759.1| - 0.0082 15.9 0.2 0.014 15.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55379909|ref|YP_137759.1| - 0.0097 15.9 0.1 0.019 15.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|55379909|ref|YP_137759.1| - 0.018 14.7 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF746 PF05344.11 gi|55379909|ref|YP_137759.1| - 0.021 14.6 0.1 0.085 12.7 0.0 2.0 3 0 0 3 3 2 0 Domain of Unknown Function (DUF746) GntR PF00392.21 gi|55379909|ref|YP_137759.1| - 0.023 14.3 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|55379909|ref|YP_137759.1| - 0.024 15.1 0.1 0.053 14.0 0.1 1.6 1 1 1 2 2 2 0 Winged helix DNA-binding domain PaaX PF07848.12 gi|55379909|ref|YP_137759.1| - 0.029 14.6 0.1 0.049 13.9 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.20 gi|55379909|ref|YP_137759.1| - 0.077 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|55379909|ref|YP_137759.1| - 0.083 12.9 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Mga PF08280.11 gi|55379909|ref|YP_137759.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain FaeA PF04703.12 gi|55379909|ref|YP_137759.1| - 0.11 12.9 0.1 0.26 11.7 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_28 PF13518.6 gi|55379909|ref|YP_137759.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|55379909|ref|YP_137759.1| - 0.16 11.8 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain MS_channel PF00924.18 gi|55379911|ref|YP_137761.1| - 6e-38 130.5 0.3 8.2e-38 130.0 0.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel YesK PF14150.6 gi|55379911|ref|YP_137761.1| - 0.022 15.0 1.5 0.04 14.1 1.5 1.4 1 0 0 1 1 1 0 YesK-like protein AI-2E_transport PF01594.16 gi|55379912|ref|YP_137762.1| - 1.7e-22 80.0 31.3 2.2e-22 79.6 31.3 1.1 1 0 0 1 1 1 1 AI-2E family transporter HATPase_c PF02518.26 gi|55379913|ref|YP_137763.1| - 5e-18 65.6 0.0 9e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|55379913|ref|YP_137763.1| - 5e-09 36.2 0.1 1.1e-08 35.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|55379913|ref|YP_137763.1| - 0.00017 21.4 0.0 0.00034 20.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.6 gi|55379913|ref|YP_137763.1| - 0.00018 21.1 0.5 0.0004 20.0 0.5 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|55379913|ref|YP_137763.1| - 0.00049 19.7 0.1 0.00091 18.8 0.1 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|55379913|ref|YP_137763.1| - 0.029 14.4 0.3 0.029 14.4 0.3 2.2 2 1 1 3 3 3 0 His Kinase A (phospho-acceptor) domain 5_3_exonuc PF01367.20 gi|55379913|ref|YP_137763.1| - 0.12 13.0 0.1 0.77 10.4 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DUF1998 PF09369.10 gi|55379914|ref|YP_137764.1| - 1.8e-19 70.3 0.0 5.5e-19 68.7 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|55379914|ref|YP_137764.1| - 1.1e-06 29.0 0.0 1.8e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|55379914|ref|YP_137764.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|55379915|ref|YP_137765.1| - 2.1e-31 109.3 0.0 7.3e-31 107.5 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|55379915|ref|YP_137765.1| - 3.5e-08 33.6 0.8 0.00042 20.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|55379915|ref|YP_137765.1| - 2.2e-06 27.3 0.1 0.00013 21.5 0.1 2.6 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|55379915|ref|YP_137765.1| - 1.7e-05 25.4 0.0 2.9e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55379915|ref|YP_137765.1| - 0.00017 21.3 0.2 0.006 16.3 0.1 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|55379915|ref|YP_137765.1| - 0.00086 19.7 1.5 0.0018 18.7 0.6 2.1 1 1 1 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|55379915|ref|YP_137765.1| - 0.0036 16.6 0.3 0.0098 15.2 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin AAA_27 PF13514.6 gi|55379915|ref|YP_137765.1| - 0.0038 16.8 0.1 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|55379915|ref|YP_137765.1| - 0.0066 16.2 0.4 0.0066 16.2 0.4 2.4 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|55379915|ref|YP_137765.1| - 0.0084 16.5 0.1 0.034 14.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|55379915|ref|YP_137765.1| - 0.011 15.9 1.1 0.096 12.8 0.3 2.5 2 1 1 3 3 3 0 AAA domain AAA_22 PF13401.6 gi|55379915|ref|YP_137765.1| - 0.012 15.9 0.4 0.047 14.0 0.4 2.1 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|55379915|ref|YP_137765.1| - 0.013 15.4 0.0 0.17 11.8 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase MukB PF04310.12 gi|55379915|ref|YP_137765.1| - 0.026 14.3 0.2 0.093 12.5 0.0 1.9 2 0 0 2 2 2 0 MukB N-terminal AAA_18 PF13238.6 gi|55379915|ref|YP_137765.1| - 0.074 13.6 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|55379915|ref|YP_137765.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain Thymidylate_kin PF02223.17 gi|55379915|ref|YP_137765.1| - 0.14 11.8 0.0 0.37 10.4 0.0 1.7 1 1 0 1 1 1 0 Thymidylate kinase NAD_binding_7 PF13241.6 gi|55379915|ref|YP_137765.1| - 4.6 7.7 7.8 2.8 8.4 2.9 2.9 2 2 1 3 3 3 0 Putative NAD(P)-binding FecCD PF01032.18 gi|55379917|ref|YP_137766.1| - 5.3e-90 301.6 32.0 1e-89 300.6 32.0 1.4 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|55379917|ref|YP_137766.1| - 8.7e-06 25.4 16.0 8.7e-06 25.4 16.0 1.8 1 1 0 1 1 1 1 ABC 3 transport family PhrC_PhrF PF11131.8 gi|55379917|ref|YP_137766.1| - 2.2 8.0 7.0 2.2 7.9 2.5 2.8 2 0 0 2 2 2 0 Rap-phr extracellular signalling Peripla_BP_2 PF01497.18 gi|55379916|ref|YP_137767.1| - 3.8e-24 85.6 1.1 5.1e-24 85.1 1.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein 5-FTHF_cyc-lig PF01812.20 gi|55379918|ref|YP_137768.1| - 1.3e-29 103.3 0.0 1.9e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family HATPase_c PF02518.26 gi|55379919|ref|YP_137769.1| - 3.2e-18 66.3 0.8 8.3e-18 64.9 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|55379919|ref|YP_137769.1| - 5.4e-14 52.3 0.1 1.5e-13 50.9 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 gi|55379919|ref|YP_137769.1| - 1.1e-11 44.5 0.1 1.1e-11 44.5 0.1 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|55379919|ref|YP_137769.1| - 2.4e-11 43.8 0.1 1.7e-10 41.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|55379919|ref|YP_137769.1| - 4.2e-09 37.1 0.0 1.1e-08 35.7 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|55379919|ref|YP_137769.1| - 1.5e-07 31.8 1.0 8.6e-07 29.3 0.0 2.8 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|55379919|ref|YP_137769.1| - 3.8e-07 30.5 0.0 1.9e-06 28.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.15 gi|55379919|ref|YP_137769.1| - 0.00041 20.6 0.0 0.001 19.3 0.0 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|55379919|ref|YP_137769.1| - 0.00087 19.3 0.5 0.0045 17.0 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|55379919|ref|YP_137769.1| - 0.017 15.4 0.0 0.16 12.2 0.0 2.6 2 0 0 2 2 2 0 PAS domain PAS_8 PF13188.7 gi|55379919|ref|YP_137769.1| - 0.04 14.0 0.3 0.16 12.0 0.0 2.2 2 0 0 2 2 2 0 PAS domain PAS PF00989.25 gi|55379919|ref|YP_137769.1| - 0.053 13.5 0.0 0.24 11.4 0.0 2.0 1 1 0 1 1 1 0 PAS fold SpoVT_C PF15714.5 gi|55379919|ref|YP_137769.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.7 2 0 0 2 2 1 0 Stage V sporulation protein T C-terminal, transcription factor PMC2NT PF08066.12 gi|55379919|ref|YP_137769.1| - 0.27 12.0 5.7 0.13 13.0 0.7 3.0 3 1 1 4 4 3 0 PMC2NT (NUC016) domain Pyr_redox_2 PF07992.14 gi|55379920|ref|YP_137770.1| - 2.9e-40 138.4 0.4 4e-40 137.9 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|55379920|ref|YP_137770.1| - 2e-14 53.8 0.0 6.2e-14 52.2 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|55379920|ref|YP_137770.1| - 1.5e-07 31.8 2.4 3.5e-07 30.7 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|55379920|ref|YP_137770.1| - 5.8e-05 23.4 0.1 0.33 11.2 0.2 2.5 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|55379920|ref|YP_137770.1| - 0.00012 22.4 1.2 0.039 14.2 0.0 3.3 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_9 PF13454.6 gi|55379920|ref|YP_137770.1| - 0.0004 20.4 0.2 0.7 9.9 0.0 3.1 2 1 1 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|55379920|ref|YP_137770.1| - 0.001 18.4 0.4 0.011 15.0 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|55379920|ref|YP_137770.1| - 0.0057 15.8 0.6 1.9 7.6 0.0 2.4 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|55379920|ref|YP_137770.1| - 0.012 14.7 1.1 0.41 9.7 0.0 2.4 2 1 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|55379920|ref|YP_137770.1| - 0.062 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|55379920|ref|YP_137770.1| - 3.4 7.2 7.7 13 5.3 0.1 2.7 2 1 0 3 3 3 0 FAD dependent oxidoreductase MMPL PF03176.15 gi|55379921|ref|YP_137771.1| - 5.5e-25 88.0 27.3 7.7e-14 51.4 8.0 2.7 3 0 0 3 3 3 2 MMPL family Patched PF02460.18 gi|55379921|ref|YP_137771.1| - 2.4e-15 55.7 21.2 5.7e-10 37.9 8.4 2.1 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|55379921|ref|YP_137771.1| - 2e-12 47.2 9.6 2e-06 27.7 1.9 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|55379921|ref|YP_137771.1| - 9.3e-06 25.2 20.5 0.0027 17.1 6.8 2.4 2 0 0 2 2 2 2 Protein export membrane protein SPATA3 PF15662.5 gi|55379921|ref|YP_137771.1| - 0.019 15.6 1.7 0.032 14.9 1.7 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 3 family CARDB PF07705.11 gi|55379922|ref|YP_137772.1| - 1.3e-14 54.3 33.0 0.004 17.4 0.6 6.6 5 3 1 6 6 6 5 CARDB NPCBM_assoc PF10633.9 gi|55379922|ref|YP_137772.1| - 2.6e-13 50.0 27.1 7.9e-06 26.0 0.2 7.9 5 1 2 7 7 7 4 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|55379922|ref|YP_137772.1| - 2.4e-11 43.8 44.3 7.2e-05 23.0 5.8 6.9 6 2 0 6 6 6 3 Domain of unknown function DUF11 PHTB1_C PF14728.6 gi|55379922|ref|YP_137772.1| - 3.6e-07 29.6 0.2 0.00058 19.1 0.0 3.3 4 0 0 4 4 4 2 PTHB1 C-terminus ASH PF15780.5 gi|55379922|ref|YP_137772.1| - 5e-07 29.9 8.3 3.5 7.9 0.0 6.2 5 2 1 6 6 6 3 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Transglut_C PF00927.22 gi|55379922|ref|YP_137772.1| - 3.2e-05 24.0 0.2 1.1 9.4 0.0 4.4 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain Fn3-like PF14310.6 gi|55379922|ref|YP_137772.1| - 9.5e-05 22.4 8.9 0.82 9.8 0.0 6.9 8 0 0 8 8 8 1 Fibronectin type III-like domain Ig_GlcNase PF18368.1 gi|55379922|ref|YP_137772.1| - 0.00051 20.2 4.7 1.8 8.7 0.0 5.5 5 1 0 5 5 5 1 Exo-beta-D-glucosaminidase Ig-fold domain N_BRCA1_IG PF16158.5 gi|55379922|ref|YP_137772.1| - 0.018 15.8 2.1 8.9 7.1 0.1 3.8 3 1 1 4 4 4 0 Ig-like domain from next to BRCA1 gene DUF2393 PF09624.10 gi|55379922|ref|YP_137772.1| - 0.16 12.0 0.0 31 4.5 0.0 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2393) Regulator_TrmB PF11495.8 gi|55379922|ref|YP_137772.1| - 0.24 10.6 8.2 0.16 11.1 0.8 3.3 4 0 0 4 4 4 0 Archaeal transcriptional regulator TrmB TetR_N PF00440.23 gi|55379923|ref|YP_137773.1| - 7.4e-15 54.5 0.2 1.3e-14 53.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|55379923|ref|YP_137773.1| - 1.3e-13 51.2 0.0 2.5e-13 50.3 0.0 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_24 PF17932.1 gi|55379923|ref|YP_137773.1| - 5e-06 26.8 0.0 1.1e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|55379923|ref|YP_137773.1| - 8.4e-05 22.7 0.0 0.00023 21.3 0.0 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|55379923|ref|YP_137773.1| - 0.00012 22.1 0.1 0.00039 20.4 0.1 1.9 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|55379923|ref|YP_137773.1| - 0.00024 21.1 0.0 0.00047 20.2 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|55379923|ref|YP_137773.1| - 0.021 15.4 0.0 0.043 14.4 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain UPF0122 PF04297.14 gi|55379923|ref|YP_137773.1| - 0.022 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_23 PF13384.6 gi|55379923|ref|YP_137773.1| - 0.025 14.3 0.0 0.064 13.1 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain HTH_40 PF14493.6 gi|55379923|ref|YP_137773.1| - 0.026 15.0 0.0 0.069 13.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|55379923|ref|YP_137773.1| - 0.034 14.2 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Mga PF05043.13 gi|55379923|ref|YP_137773.1| - 0.062 13.9 0.1 0.1 13.2 0.1 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_20 PF12840.7 gi|55379923|ref|YP_137773.1| - 0.11 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|55379923|ref|YP_137773.1| - 0.17 11.6 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HalX PF08663.10 gi|55379924|ref|YP_137774.1| - 3e-14 53.1 8.5 5.6e-14 52.2 8.5 1.6 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|55379924|ref|YP_137774.1| - 2.2e-06 27.8 0.0 4e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PKcGMP_CC PF16808.5 gi|55379924|ref|YP_137774.1| - 0.037 13.9 0.8 0.095 12.6 0.8 1.7 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase RE_NgoFVII PF09565.10 gi|55379924|ref|YP_137774.1| - 0.054 12.8 0.0 0.06 12.6 0.0 1.1 1 0 0 1 1 1 0 NgoFVII restriction endonuclease DDE_Tnp_IS240 PF13610.6 gi|55379925|ref|YP_137775.1| - 4.2e-14 53.0 0.1 5.8e-14 52.5 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|55379925|ref|YP_137775.1| - 1.1e-05 25.6 0.1 3.2e-05 24.1 0.1 1.7 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.14 gi|55379925|ref|YP_137775.1| - 0.019 14.4 0.2 0.091 12.2 0.1 2.0 1 1 0 1 1 1 0 Transposase IS66 family PAS_4 PF08448.10 gi|55379926|ref|YP_137776.1| - 0.092 13.0 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 PAS fold DUF2721 PF11026.8 gi|55379926|ref|YP_137776.1| - 0.11 12.4 0.5 0.16 11.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF3098 PF11297.8 gi|55379927|ref|YP_137777.1| - 0.0038 16.8 0.7 0.24 11.0 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3098) DUF2065 PF09838.9 gi|55379927|ref|YP_137777.1| - 0.052 13.6 1.4 0.052 13.6 1.4 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) NAD_kinase PF01513.21 gi|55379928|ref|YP_137778.1| - 2.7e-36 125.2 0.6 4.1e-36 124.7 0.6 1.2 1 0 0 1 1 1 1 ATP-NAD kinase SCP_3 PF17844.1 gi|55379928|ref|YP_137778.1| - 0.007 16.1 0.2 0.063 13.1 0.1 2.4 2 0 0 2 2 2 1 Bacterial SCP ortholog ATPase PF06745.13 gi|55379929|ref|YP_137779.1| - 7e-55 185.9 0.1 8.4e-55 185.6 0.1 1.1 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|55379929|ref|YP_137779.1| - 4e-06 26.4 0.1 0.0047 16.3 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|55379929|ref|YP_137779.1| - 7.4e-06 25.8 0.0 1.4e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|55379929|ref|YP_137779.1| - 1.3e-05 24.9 0.0 2.1e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|55379929|ref|YP_137779.1| - 0.0002 20.2 0.3 0.00049 18.8 0.3 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein MEDS PF14417.6 gi|55379929|ref|YP_137779.1| - 0.00041 20.2 0.0 0.00071 19.4 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RecA PF00154.21 gi|55379929|ref|YP_137779.1| - 0.0015 18.0 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|55379929|ref|YP_137779.1| - 0.015 14.6 0.2 0.026 13.8 0.2 1.3 1 0 0 1 1 1 0 Rad51 AAA_33 PF13671.6 gi|55379929|ref|YP_137779.1| - 0.055 13.6 0.2 0.1 12.8 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|55379929|ref|YP_137779.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|55379929|ref|YP_137779.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein DUF4013 PF13197.6 gi|55379930|ref|YP_137780.1| - 7.7e-37 126.7 16.0 7.7e-37 126.7 16.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Usp PF00582.26 gi|55379931|ref|YP_137781.1| - 3.4e-11 43.8 0.6 4.3e-11 43.5 0.6 1.2 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|55379931|ref|YP_137781.1| - 0.00019 21.4 0.4 0.51 10.2 0.3 2.1 2 0 0 2 2 2 2 Electron transfer flavoprotein domain GFO_IDH_MocA PF01408.22 gi|55379931|ref|YP_137781.1| - 0.019 15.8 0.1 0.034 15.0 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Usp PF00582.26 gi|55379932|ref|YP_137782.1| - 1.5e-35 122.7 1.7 1.7e-35 122.6 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF87 PF01935.17 gi|55379933|ref|YP_137783.1| - 8.8e-08 32.5 0.0 1.8e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|55379933|ref|YP_137783.1| - 6.6e-07 28.3 0.2 0.00091 17.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|55379933|ref|YP_137783.1| - 0.0002 20.4 0.0 0.0091 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|55379933|ref|YP_137783.1| - 0.025 14.8 0.0 0.11 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|55379933|ref|YP_137783.1| - 0.037 14.0 0.0 9.2 6.2 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|55379933|ref|YP_137783.1| - 0.051 12.5 0.0 0.078 11.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|55379933|ref|YP_137783.1| - 0.1 11.9 0.0 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF4258 PF14076.6 gi|55379933|ref|YP_137783.1| - 0.22 12.0 0.7 0.93 9.9 0.7 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) Exo_endo_phos PF03372.23 gi|55379934|ref|YP_137784.1| - 8.6e-15 54.9 5.4 1.1e-14 54.5 5.4 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|55379934|ref|YP_137784.1| - 1.1e-06 28.5 0.0 1.7e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase HTH_20 PF12840.7 gi|55379936|ref|YP_137786.1| - 1.1e-09 38.2 0.6 1.7e-09 37.6 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|55379936|ref|YP_137786.1| - 1.9e-07 30.7 0.2 5.2e-07 29.4 0.2 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|55379936|ref|YP_137786.1| - 1.9e-06 27.7 0.0 3.2e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55379936|ref|YP_137786.1| - 3.8e-06 26.7 0.1 6e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55379936|ref|YP_137786.1| - 4.5e-06 26.5 0.0 6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|55379936|ref|YP_137786.1| - 1.6e-05 25.0 0.0 2.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_24 PF13412.6 gi|55379936|ref|YP_137786.1| - 3.5e-05 23.3 0.0 5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|55379936|ref|YP_137786.1| - 0.00046 20.1 0.0 0.00072 19.4 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|55379936|ref|YP_137786.1| - 0.00047 20.0 0.0 0.0007 19.5 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|55379936|ref|YP_137786.1| - 0.00099 19.0 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DprA_WH PF17782.1 gi|55379936|ref|YP_137786.1| - 0.0031 17.6 0.3 0.0051 16.9 0.3 1.4 1 0 0 1 1 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|55379936|ref|YP_137786.1| - 0.011 15.8 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_41 PF14502.6 gi|55379936|ref|YP_137786.1| - 0.017 14.8 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|55379936|ref|YP_137786.1| - 0.018 15.2 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.6 gi|55379936|ref|YP_137786.1| - 0.054 13.3 0.1 0.1 12.4 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|55379936|ref|YP_137786.1| - 0.057 13.4 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RP-C PF03428.13 gi|55379936|ref|YP_137786.1| - 0.095 12.4 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain CDKN3 PF05706.12 gi|55379936|ref|YP_137786.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) MrpF_PhaF PF04066.13 gi|55379937|ref|YP_137787.1| - 0.019 15.3 1.9 0.019 15.3 1.9 2.1 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) MerC PF03203.14 gi|55379937|ref|YP_137787.1| - 0.035 14.6 6.5 0.049 14.1 6.5 1.3 1 1 0 1 1 1 0 MerC mercury resistance protein 7TMR-DISM_7TM PF07695.11 gi|55379937|ref|YP_137787.1| - 0.048 13.6 7.1 0.053 13.4 7.1 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF998 PF06197.13 gi|55379937|ref|YP_137787.1| - 0.087 12.4 10.5 0.1 12.2 10.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF1129 PF06570.11 gi|55379937|ref|YP_137787.1| - 0.1 12.1 2.2 0.12 11.8 2.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) MNHE PF01899.16 gi|55379937|ref|YP_137787.1| - 0.19 11.5 5.6 0.11 12.3 4.1 1.3 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit Glucos_trans_II PF14264.6 gi|55379937|ref|YP_137787.1| - 0.19 11.0 5.0 0.22 10.9 5.0 1.2 1 0 0 1 1 1 0 Glucosyl transferase GtrII LptF_LptG PF03739.14 gi|55379937|ref|YP_137787.1| - 0.23 10.2 5.1 0.24 10.2 5.1 1.1 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG FeoB_associated PF12669.7 gi|55379937|ref|YP_137787.1| - 0.24 11.8 1.8 24 5.4 0.0 2.5 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein CAAD PF14159.6 gi|55379937|ref|YP_137787.1| - 3.1 7.7 7.2 1.2 9.0 4.2 1.8 1 1 1 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase TctB PF07331.11 gi|55379937|ref|YP_137787.1| - 3.8 7.8 11.8 0.087 13.1 3.0 2.0 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF4131 PF13567.6 gi|55379937|ref|YP_137787.1| - 3.8 7.1 9.0 0.74 9.4 5.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF202 PF02656.15 gi|55379937|ref|YP_137787.1| - 9.6 6.7 12.0 6.1 7.4 0.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF202) NurA PF09376.10 gi|55379938|ref|YP_137788.1| - 4.9e-18 65.7 0.0 6.8e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 NurA domain AbiTii PF18864.1 gi|55379939|ref|YP_137789.1| - 0.024 14.8 0.1 0.031 14.4 0.1 1.2 1 0 0 1 1 1 0 AbiTii iPGM_N PF06415.13 gi|55379940|ref|YP_137790.1| - 4.1e-77 258.5 0.4 5.6e-77 258.0 0.4 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|55379940|ref|YP_137790.1| - 3.3e-71 239.5 0.1 3.8e-71 239.4 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|55379940|ref|YP_137790.1| - 0.0014 18.1 0.1 0.0048 16.3 0.1 2.0 1 1 0 1 1 1 1 Sulfatase CobD_Cbib PF03186.13 gi|55379940|ref|YP_137790.1| - 0.04 13.1 0.1 0.064 12.5 0.1 1.2 1 0 0 1 1 1 0 CobD/Cbib protein PTS_2-RNA PF01885.16 gi|55379941|ref|YP_137791.1| - 4.9e-25 88.6 0.0 5.9e-25 88.4 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|55379941|ref|YP_137791.1| - 0.21 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 Poly(ADP-ribose) polymerase catalytic domain Acetyltransf_1 PF00583.25 gi|55379942|ref|YP_137792.1| - 9.6e-13 48.4 0.0 1.8e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|55379942|ref|YP_137792.1| - 5.2e-07 30.0 0.0 1e-06 29.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|55379942|ref|YP_137792.1| - 2.8e-06 27.6 0.0 3.4e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|55379942|ref|YP_137792.1| - 0.0016 18.6 1.0 0.0048 17.1 0.5 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|55379942|ref|YP_137792.1| - 0.0027 17.7 0.0 0.0061 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Acetyltransf_10 PF13673.7 gi|55379942|ref|YP_137792.1| - 0.0027 17.6 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|55379942|ref|YP_137792.1| - 0.0045 17.7 0.0 0.0065 17.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Pyridox_ox_2 PF12900.7 gi|55379943|ref|YP_137793.1| - 5.5e-22 78.3 0.0 6.3e-22 78.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|55379943|ref|YP_137793.1| - 0.035 14.3 0.0 0.049 13.8 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase QRPTase_C PF01729.19 gi|55379944|ref|YP_137794.1| - 1.7e-56 190.6 1.3 2.4e-56 190.1 1.3 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|55379944|ref|YP_137794.1| - 1.3e-20 73.2 0.1 2.4e-20 72.4 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Peripla_BP_1 PF00532.21 gi|55379944|ref|YP_137794.1| - 0.053 13.0 0.0 0.086 12.2 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family FAD_binding_2 PF00890.24 gi|55379945|ref|YP_137795.1| - 1.3e-78 265.0 5.2 1.6e-78 264.7 5.2 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55379945|ref|YP_137795.1| - 6.7e-12 45.2 0.2 7.8e-07 28.6 0.1 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|55379945|ref|YP_137795.1| - 8.7e-12 45.3 2.0 1.1e-10 41.7 0.3 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|55379945|ref|YP_137795.1| - 6.2e-07 28.8 0.2 6.4e-05 22.2 0.4 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|55379945|ref|YP_137795.1| - 9.8e-07 28.5 4.6 2.5e-06 27.1 3.6 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|55379945|ref|YP_137795.1| - 2.6e-05 24.2 0.3 6.1e-05 23.0 0.3 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.14 gi|55379945|ref|YP_137795.1| - 0.00022 20.1 0.1 0.0039 15.9 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|55379945|ref|YP_137795.1| - 0.00043 20.5 0.4 0.0011 19.2 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|55379945|ref|YP_137795.1| - 0.0028 17.0 0.1 0.0052 16.1 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|55379945|ref|YP_137795.1| - 0.019 15.5 0.2 0.095 13.3 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|55379945|ref|YP_137795.1| - 0.019 14.2 0.1 0.039 13.2 0.1 1.5 1 0 0 1 1 1 0 FAD binding domain Thi4 PF01946.17 gi|55379945|ref|YP_137795.1| - 0.038 13.2 0.1 0.068 12.4 0.1 1.5 1 0 0 1 1 1 0 Thi4 family DXP_reductoisom PF02670.16 gi|55379945|ref|YP_137795.1| - 0.16 12.7 0.2 0.4 11.4 0.2 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NadA PF02445.16 gi|55379946|ref|YP_137796.1| - 2.2e-103 345.6 0.1 2.5e-103 345.4 0.1 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Thioredox_DsbH PF03190.15 gi|55379946|ref|YP_137796.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF255 DUF4769 PF15992.5 gi|55379946|ref|YP_137796.1| - 0.13 12.1 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4769) Arteri_nsp7a PF16749.5 gi|55379946|ref|YP_137796.1| - 0.13 12.4 0.8 77 3.5 0.1 3.7 3 1 1 4 4 4 0 Arterivirus nonstructural protein 7 alpha Amidohydro_3 PF07969.11 gi|55379947|ref|YP_137797.1| - 3.8e-78 264.1 13.9 4.4e-78 263.9 13.9 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|55379947|ref|YP_137797.1| - 2.7e-13 50.0 0.4 1.6e-08 34.2 0.1 3.1 2 1 0 2 2 2 2 Amidohydrolase family HMG-CoA_red PF00368.18 gi|55379948|ref|YP_137798.1| - 7.4e-129 429.9 8.1 8.4e-129 429.8 8.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF3784 PF12650.7 gi|55379949|ref|YP_137799.1| - 2.3 8.5 6.4 3.6 7.9 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) DUF4337 PF14235.6 gi|55379949|ref|YP_137799.1| - 7.4 6.7 5.9 16 5.5 5.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) zf-UDP PF14569.6 gi|55379950|ref|YP_137800.1| - 0.016 15.3 1.3 0.029 14.5 1.3 1.4 1 0 0 1 1 1 0 Zinc-binding RING-finger Mu-like_Com PF10122.9 gi|55379950|ref|YP_137800.1| - 0.034 13.6 0.7 0.09 12.2 0.7 1.8 1 0 0 1 1 1 0 Mu-like prophage protein Com DUF4776 PF16003.5 gi|55379950|ref|YP_137800.1| - 0.092 11.7 0.2 0.089 11.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) CpXC PF14353.6 gi|55379950|ref|YP_137800.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 CpXC protein Rrf2 PF02082.20 gi|55379950|ref|YP_137800.1| - 0.17 12.2 0.1 0.35 11.2 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator DUF1922 PF09082.10 gi|55379950|ref|YP_137800.1| - 0.21 11.9 1.8 0.19 12.0 0.5 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1922) HypA PF01155.19 gi|55379950|ref|YP_137800.1| - 0.23 11.5 1.0 0.38 10.8 1.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|55379950|ref|YP_137800.1| - 0.75 9.8 3.2 12 5.9 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Cupin_2 PF07883.11 gi|55379951|ref|YP_137801.1| - 2.3e-22 78.5 4.2 3.2e-22 78.0 4.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|55379951|ref|YP_137801.1| - 1.2e-12 48.0 1.0 1.6e-12 47.5 1.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|55379951|ref|YP_137801.1| - 1.1e-07 31.6 0.1 1.3e-07 31.3 0.1 1.1 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|55379951|ref|YP_137801.1| - 4.9e-07 29.9 0.0 6.6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|55379951|ref|YP_137801.1| - 9.3e-06 25.6 0.1 1.1e-05 25.3 0.1 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ectoine_synth PF06339.12 gi|55379951|ref|YP_137801.1| - 0.00026 21.2 0.0 0.00033 20.9 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|55379951|ref|YP_137801.1| - 0.00082 19.0 0.3 0.0011 18.6 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|55379951|ref|YP_137801.1| - 0.0024 17.6 0.2 0.0029 17.3 0.2 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_7 PF12973.7 gi|55379951|ref|YP_137801.1| - 0.0032 17.3 0.6 0.0041 17.0 0.6 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain AraC_N PF06719.13 gi|55379951|ref|YP_137801.1| - 0.007 16.0 0.0 0.0092 15.6 0.0 1.2 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus ARD PF03079.14 gi|55379951|ref|YP_137801.1| - 0.0094 16.1 0.1 0.0094 16.1 0.1 1.1 1 0 0 1 1 1 1 ARD/ARD' family DMSP_lyase PF16867.5 gi|55379951|ref|YP_137801.1| - 0.0095 15.6 1.0 0.012 15.2 1.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_6 PF12852.7 gi|55379951|ref|YP_137801.1| - 0.013 15.3 0.1 0.015 15.1 0.1 1.1 1 0 0 1 1 1 0 Cupin Auxin_BP PF02041.16 gi|55379951|ref|YP_137801.1| - 0.036 13.7 0.2 0.063 12.9 0.2 1.5 1 1 0 1 1 1 0 Auxin binding protein HCV_NS4a PF01006.20 gi|55379953|ref|YP_137803.1| - 0.067 13.0 0.8 0.093 12.5 0.6 1.4 1 1 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a ATP1G1_PLM_MAT8 PF02038.16 gi|55379954|ref|YP_137804.1| - 0.042 13.3 0.1 0.092 12.2 0.1 1.6 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family Iso_dh PF00180.20 gi|55379955|ref|YP_137805.1| - 4e-111 371.5 0.0 5.4e-111 371.1 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.18 gi|55379956|ref|YP_137806.1| - 1.4e-56 191.8 13.7 1.5e-56 191.6 13.7 1.0 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.24 gi|55379957|ref|YP_137807.1| - 3e-43 147.9 0.5 4.1e-43 147.5 0.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 RecR PF02132.15 gi|55379958|ref|YP_137808.1| - 0.068 12.7 1.5 1.8 8.2 0.2 2.2 2 0 0 2 2 2 0 RecR protein HIT PF01230.23 gi|55379959|ref|YP_137809.1| - 1.6e-11 44.8 0.0 3.9e-11 43.6 0.0 1.6 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.15 gi|55379959|ref|YP_137809.1| - 0.00028 20.7 0.0 0.00049 19.9 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|55379959|ref|YP_137809.1| - 0.00033 21.1 0.0 0.00065 20.2 0.0 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding TerD PF02342.18 gi|55379959|ref|YP_137809.1| - 0.19 11.2 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 TerD domain Rieske PF00355.26 gi|55379960|ref|YP_137810.1| - 3.6e-05 23.6 0.4 6.2e-05 22.9 0.4 1.5 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Cation_efflux PF01545.21 gi|55379961|ref|YP_137811.1| - 1.9e-39 135.5 4.8 2.4e-39 135.2 4.8 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|55379961|ref|YP_137811.1| - 4.2e-18 65.3 2.2 6.6e-18 64.6 2.2 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DoxX PF07681.12 gi|55379962|ref|YP_137812.1| - 9.2e-09 35.8 2.1 1.5e-08 35.1 2.1 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.11 gi|55379962|ref|YP_137812.1| - 0.00013 22.1 0.0 0.023 14.9 0.0 2.1 1 1 1 2 2 2 2 HR-like lesion-inducing Radical_SAM PF04055.21 gi|55379963|ref|YP_137813.1| - 7.4e-21 75.2 0.0 1.3e-20 74.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|55379963|ref|YP_137813.1| - 3e-19 68.9 0.0 6.2e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|55379963|ref|YP_137813.1| - 7.8e-06 25.8 0.2 1.6e-05 24.8 0.2 1.5 1 0 0 1 1 1 1 TRAM domain DUF63 PF01889.17 gi|55379965|ref|YP_137815.1| - 5.5e-19 69.4 13.8 7.8e-19 68.9 13.8 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF3309 PF11752.8 gi|55379965|ref|YP_137815.1| - 0.021 14.9 4.1 0.021 14.9 4.1 3.4 2 2 1 3 3 3 0 Protein of unknown function (DUF3309) Phage_Coat_Gp8 PF05371.12 gi|55379967|ref|YP_137817.1| - 0.0019 17.9 0.3 2.5 8.0 0.2 2.6 2 0 0 2 2 2 2 Phage major coat protein, Gp8 LapA_dom PF06305.11 gi|55379967|ref|YP_137817.1| - 0.043 13.6 0.0 0.043 13.6 0.0 3.4 3 1 1 4 4 4 0 Lipopolysaccharide assembly protein A domain Phage_holin_2_1 PF04971.12 gi|55379967|ref|YP_137817.1| - 0.16 12.0 1.7 0.35 10.9 0.1 2.3 2 0 0 2 2 2 0 Bacteriophage P21 holin S ATPase_gene1 PF09527.10 gi|55379968|ref|YP_137818.1| - 0.34 11.1 5.8 0.69 10.1 4.3 1.9 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter PNP_UDP_1 PF01048.20 gi|55379969|ref|YP_137819.1| - 4e-45 153.9 1.9 4.6e-45 153.7 1.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3568 PF12092.8 gi|55379969|ref|YP_137819.1| - 0.12 12.5 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) HPP PF04982.13 gi|55379970|ref|YP_137820.1| - 6.5e-16 58.6 2.0 1.4e-15 57.6 2.0 1.6 1 0 0 1 1 1 1 HPP family Usp PF00582.26 gi|55379970|ref|YP_137820.1| - 3e-05 24.5 1.6 0.014 15.9 0.3 3.9 2 2 0 3 3 3 1 Universal stress protein family UPF0444 PF15475.6 gi|55379970|ref|YP_137820.1| - 0.029 14.6 0.4 0.06 13.6 0.4 1.4 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 TrkA_N PF02254.18 gi|55379971|ref|YP_137821.1| - 1.7e-27 96.0 1.7 2.6e-27 95.4 1.7 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|55379971|ref|YP_137821.1| - 4e-14 52.3 4.8 1.7e-13 50.3 2.0 2.6 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|55379971|ref|YP_137821.1| - 0.00019 20.7 0.0 0.0003 20.1 0.0 1.3 1 0 0 1 1 1 1 Ion transport protein NAD_binding_7 PF13241.6 gi|55379971|ref|YP_137821.1| - 0.0013 19.1 0.3 0.0037 17.7 0.2 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding VKOR PF07884.14 gi|55379971|ref|YP_137821.1| - 8.1 6.7 7.4 5.1 7.3 0.5 2.7 2 1 0 2 2 2 0 Vitamin K epoxide reductase family TrkA_C PF02080.21 gi|55379972|ref|YP_137822.1| - 1.3e-13 50.5 0.2 4.2e-12 45.7 0.0 2.7 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.21 gi|55379973|ref|YP_137823.1| - 3e-05 23.8 0.1 3e-05 23.8 0.1 2.3 3 0 0 3 3 3 1 TrkA-C domain ThiS PF02597.20 gi|55379974|ref|YP_137824.1| - 7.8e-11 42.5 0.2 9.4e-11 42.2 0.2 1.1 1 0 0 1 1 1 1 ThiS family MR_MLE_C PF13378.6 gi|55379974|ref|YP_137824.1| - 0.012 15.1 1.3 0.015 14.9 1.3 1.0 1 0 0 1 1 1 0 Enolase C-terminal domain-like DUF5061 PF16587.5 gi|55379974|ref|YP_137824.1| - 0.043 13.9 0.0 0.055 13.5 0.0 1.2 1 0 0 1 1 1 0 17 kDa common-antigen outer membrane protein DUF1902 PF08972.11 gi|55379974|ref|YP_137824.1| - 0.056 13.4 0.4 0.078 13.0 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) STN PF07660.14 gi|55379974|ref|YP_137824.1| - 0.17 11.7 0.0 0.32 10.8 0.0 1.5 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain HisKA_7TM PF16927.5 gi|55379975|ref|YP_137825.1| - 6e-16 59.2 14.0 9.1e-16 58.6 14.0 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|55379975|ref|YP_137825.1| - 0.00038 20.4 0.5 0.0014 18.6 0.2 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|55379975|ref|YP_137825.1| - 0.024 14.7 0.1 0.084 12.9 0.0 1.9 2 0 0 2 2 2 0 PAS domain SPOB_a PF14689.6 gi|55379975|ref|YP_137825.1| - 0.043 13.5 0.1 0.12 12.1 0.1 1.8 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS PF00989.25 gi|55379975|ref|YP_137825.1| - 0.13 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold Acetyltransf_1 PF00583.25 gi|55379976|ref|YP_137826.1| - 1.9e-10 41.0 0.0 4.6e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.7 gi|55379976|ref|YP_137826.1| - 8.6e-06 26.0 2.3 3.2e-05 24.1 0.5 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|55379976|ref|YP_137826.1| - 3.8e-05 24.0 0.0 6.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|55379976|ref|YP_137826.1| - 0.0019 18.1 0.0 0.0038 17.2 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|55379976|ref|YP_137826.1| - 0.0059 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|55379976|ref|YP_137826.1| - 0.021 14.9 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4821 PF16092.5 gi|55379976|ref|YP_137826.1| - 0.028 14.1 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) Acetyltransf_3 PF13302.7 gi|55379976|ref|YP_137826.1| - 0.047 14.4 0.9 0.12 13.1 0.3 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|55379976|ref|YP_137826.1| - 0.073 13.2 0.0 1.5 8.9 0.0 2.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.20 gi|55379977|ref|YP_137827.1| - 7.6e-61 205.0 0.7 1.3e-60 204.2 0.7 1.4 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|55379977|ref|YP_137827.1| - 2.7e-27 95.2 0.0 2.1e-26 92.3 0.0 2.2 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|55379977|ref|YP_137827.1| - 1.3e-16 59.6 0.0 2.3e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain DUF2285 PF10074.9 gi|55379978|ref|YP_137828.1| - 0.16 12.6 1.8 0.37 11.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Bax1-I PF01027.20 gi|55379979|ref|YP_137829.1| - 0.32 10.8 6.3 0.43 10.4 6.3 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF2244 PF10003.9 gi|55379979|ref|YP_137829.1| - 0.98 9.1 2.5 0.82 9.3 0.1 1.8 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Na_H_antiporter PF03553.14 gi|55379980|ref|YP_137830.1| - 3.8e-68 229.9 30.4 2.4e-66 224.1 14.2 2.5 2 1 1 3 3 3 2 Na+/H+ antiporter family DUF2830 PF11125.8 gi|55379980|ref|YP_137830.1| - 0.17 11.9 0.6 0.49 10.4 0.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2830) CcmD PF04995.14 gi|55379980|ref|YP_137830.1| - 3.1 7.9 6.8 1.2 9.3 1.1 3.3 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) Cytochrom_B_C PF00032.17 gi|55379980|ref|YP_137830.1| - 7.4 6.9 7.8 1.6 9.0 1.0 3.2 3 1 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD HTH_5 PF01022.20 gi|55379981|ref|YP_137831.1| - 1.8e-15 56.5 0.3 3.5e-14 52.4 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55379981|ref|YP_137831.1| - 5.8e-11 42.3 1.6 3.3e-10 39.9 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|55379981|ref|YP_137831.1| - 2.5e-10 40.1 0.0 1.3e-05 25.0 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|55379981|ref|YP_137831.1| - 1e-09 38.1 0.3 5.1e-07 29.5 0.0 2.8 3 0 0 3 3 3 1 MarR family MarR PF01047.22 gi|55379981|ref|YP_137831.1| - 8.4e-08 32.0 0.0 5.4e-06 26.2 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|55379981|ref|YP_137831.1| - 1.1e-06 28.5 0.0 0.00034 20.5 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|55379981|ref|YP_137831.1| - 4.6e-06 26.1 0.1 5.6e-05 22.6 0.1 2.7 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|55379981|ref|YP_137831.1| - 3.4e-05 24.1 0.0 0.008 16.5 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|55379981|ref|YP_137831.1| - 6.1e-05 22.9 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|55379981|ref|YP_137831.1| - 8.2e-05 22.7 0.0 0.0015 18.6 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|55379981|ref|YP_137831.1| - 0.0001 22.3 0.2 0.0034 17.5 0.0 2.5 2 0 0 2 2 2 1 DprA winged helix domain GntR PF00392.21 gi|55379981|ref|YP_137831.1| - 0.00013 21.6 0.1 0.096 12.4 0.0 2.8 3 0 0 3 3 2 1 Bacterial regulatory proteins, gntR family PadR PF03551.14 gi|55379981|ref|YP_137831.1| - 0.00015 21.6 0.8 0.0061 16.5 0.1 3.5 3 2 1 4 4 4 1 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 gi|55379981|ref|YP_137831.1| - 0.0016 17.9 0.0 0.0034 16.9 0.0 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|55379981|ref|YP_137831.1| - 0.0023 17.7 0.0 0.051 13.4 0.0 2.6 2 0 0 2 2 2 1 LexA DNA binding domain Mnd1 PF03962.15 gi|55379981|ref|YP_137831.1| - 0.0049 17.1 0.0 2.8 8.3 0.0 2.4 2 0 0 2 2 2 1 Mnd1 HTH domain DUF4423 PF14394.6 gi|55379981|ref|YP_137831.1| - 0.0057 16.4 0.0 3.1 7.5 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_47 PF16221.5 gi|55379981|ref|YP_137831.1| - 0.016 14.8 0.1 3.6 7.2 0.0 2.6 3 0 0 3 3 3 0 winged helix-turn-helix HTH_AsnC-type PF13404.6 gi|55379981|ref|YP_137831.1| - 0.028 14.2 0.1 0.55 10.1 0.0 3.2 3 1 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|55379981|ref|YP_137831.1| - 0.034 14.6 0.1 0.1 13.1 0.0 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|55379981|ref|YP_137831.1| - 0.035 14.2 0.0 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|55379981|ref|YP_137831.1| - 0.037 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain HTH_IclR PF09339.10 gi|55379981|ref|YP_137831.1| - 0.04 13.7 0.1 0.25 11.2 0.0 2.3 2 1 0 2 2 2 0 IclR helix-turn-helix domain RP-C PF03428.13 gi|55379981|ref|YP_137831.1| - 0.04 13.6 0.1 0.54 9.9 0.0 2.5 3 0 0 3 3 3 0 Replication protein C N-terminal domain DDRGK PF09756.9 gi|55379981|ref|YP_137831.1| - 0.042 13.4 0.1 0.085 12.4 0.0 1.4 2 0 0 2 2 2 0 DDRGK domain Cdc6_C PF09079.11 gi|55379981|ref|YP_137831.1| - 0.047 13.7 0.1 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_36 PF13730.6 gi|55379981|ref|YP_137831.1| - 0.061 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain BLACT_WH PF17778.1 gi|55379981|ref|YP_137831.1| - 0.083 12.9 6.9 0.57 10.2 0.1 3.1 3 0 0 3 3 3 0 Beta-lactamase associated winged helix domain HxlR PF01638.17 gi|55379981|ref|YP_137831.1| - 0.12 12.2 0.0 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix DUF2513 PF10711.9 gi|55379981|ref|YP_137831.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) CdvA PF18822.1 gi|55379982|ref|YP_137832.1| - 4e-05 23.4 0.6 6.7e-05 22.7 0.6 1.3 1 0 0 1 1 1 1 CdvA-like coiled-coil domain CALCOCO1 PF07888.11 gi|55379982|ref|YP_137832.1| - 0.00046 19.2 2.8 0.00065 18.7 2.8 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Spc7 PF08317.11 gi|55379982|ref|YP_137832.1| - 0.011 14.7 1.5 0.014 14.2 1.5 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein GvpG PF05120.12 gi|55379982|ref|YP_137832.1| - 0.016 15.2 0.7 0.03 14.3 0.7 1.5 1 0 0 1 1 1 0 Gas vesicle protein G Leu_zip PF15294.6 gi|55379982|ref|YP_137832.1| - 0.022 14.3 1.1 0.03 13.8 1.1 1.2 1 0 0 1 1 1 0 Leucine zipper DMAP_binding PF06464.11 gi|55379982|ref|YP_137832.1| - 0.035 14.9 1.0 0.082 13.7 1.0 1.6 1 0 0 1 1 1 0 DMAP1-binding Domain Fmp27_WPPW PF10359.9 gi|55379982|ref|YP_137832.1| - 0.11 11.4 0.8 0.16 10.8 0.8 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ABC_tran_CTD PF16326.5 gi|55379982|ref|YP_137832.1| - 0.37 11.1 2.6 0.69 10.2 0.9 2.0 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF1405 PF07187.11 gi|55379983|ref|YP_137833.1| - 9.4e-35 119.9 11.3 9.4e-35 119.9 11.3 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1405) HTH_10 PF04967.12 gi|55379985|ref|YP_137835.1| - 5.7e-16 58.1 0.0 8.7e-16 57.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55379985|ref|YP_137835.1| - 0.00012 22.0 0.0 0.00027 20.8 0.0 1.6 1 1 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|55379985|ref|YP_137835.1| - 0.0074 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Peptidase_S49 PF01343.18 gi|55379985|ref|YP_137835.1| - 0.058 13.3 0.0 0.088 12.8 0.0 1.2 1 0 0 1 1 1 0 Peptidase family S49 Potyvirid-P3 PF13608.6 gi|55379985|ref|YP_137835.1| - 0.064 12.3 0.0 0.18 10.8 0.0 1.6 1 1 1 2 2 2 0 Protein P3 of Potyviral polyprotein MarR_2 PF12802.7 gi|55379985|ref|YP_137835.1| - 0.064 13.1 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|55379985|ref|YP_137835.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain acVLRF1 PF18859.1 gi|55379986|ref|YP_137836.1| - 1.7e-29 102.7 0.8 1.7e-29 102.7 0.8 2.5 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor ERM PF00769.19 gi|55379986|ref|YP_137836.1| - 8.5e-06 25.8 1.2 1.1e-05 25.3 1.2 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family ATG16 PF08614.11 gi|55379986|ref|YP_137836.1| - 0.00076 19.8 11.7 0.0013 19.0 11.7 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HOOK PF05622.12 gi|55379986|ref|YP_137836.1| - 0.0008 17.7 5.3 0.0011 17.3 5.3 1.1 1 0 0 1 1 1 1 HOOK protein eRF1_2 PF03464.15 gi|55379986|ref|YP_137836.1| - 0.00093 19.5 0.2 0.0027 18.0 0.0 1.8 2 0 0 2 2 1 1 eRF1 domain 2 bZIP_1 PF00170.21 gi|55379986|ref|YP_137836.1| - 0.0063 16.6 11.0 0.26 11.4 4.6 2.4 1 1 1 2 2 2 2 bZIP transcription factor CLZ PF16526.5 gi|55379986|ref|YP_137836.1| - 0.0082 16.5 10.3 0.0091 16.3 5.8 2.7 1 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FPP PF05911.11 gi|55379986|ref|YP_137836.1| - 0.016 13.4 6.1 0.022 13.0 6.1 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Jnk-SapK_ap_N PF09744.9 gi|55379986|ref|YP_137836.1| - 0.016 15.4 10.2 0.039 14.2 10.2 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF724 PF05266.14 gi|55379986|ref|YP_137836.1| - 0.024 14.5 4.2 0.046 13.5 4.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TSC22 PF01166.18 gi|55379986|ref|YP_137836.1| - 0.03 14.6 6.9 1.6 9.1 0.4 2.5 2 0 0 2 2 2 0 TSC-22/dip/bun family KASH_CCD PF14662.6 gi|55379986|ref|YP_137836.1| - 0.036 13.9 7.1 0.067 13.0 7.1 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH bZIP_2 PF07716.15 gi|55379986|ref|YP_137836.1| - 0.048 13.8 13.9 0.77 9.9 1.5 2.6 1 1 1 2 2 2 0 Basic region leucine zipper Uso1_p115_C PF04871.13 gi|55379986|ref|YP_137836.1| - 0.07 13.5 9.2 0.14 12.6 9.2 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4407 PF14362.6 gi|55379986|ref|YP_137836.1| - 0.086 12.2 3.4 0.15 11.4 3.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Cgr1 PF03879.14 gi|55379986|ref|YP_137836.1| - 0.13 12.6 7.4 0.31 11.4 7.4 1.6 1 0 0 1 1 1 0 Cgr1 family DUF1664 PF07889.12 gi|55379986|ref|YP_137836.1| - 0.16 12.0 0.5 0.44 10.6 0.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) Fmp27_WPPW PF10359.9 gi|55379986|ref|YP_137836.1| - 0.19 10.6 4.7 0.29 10.0 4.7 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMPIT PF07851.13 gi|55379986|ref|YP_137836.1| - 0.2 10.9 1.6 0.29 10.3 1.6 1.2 1 0 0 1 1 1 0 TMPIT-like protein Snapin_Pallidin PF14712.6 gi|55379986|ref|YP_137836.1| - 0.21 12.0 4.5 4.8 7.7 4.5 2.6 1 1 0 1 1 1 0 Snapin/Pallidin ZapB PF06005.12 gi|55379986|ref|YP_137836.1| - 0.24 11.9 16.8 1.3 9.5 5.3 2.8 1 1 1 2 2 2 0 Cell division protein ZapB OmpH PF03938.14 gi|55379986|ref|YP_137836.1| - 0.28 11.5 3.7 0.67 10.3 3.4 1.7 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) GIT_CC PF16559.5 gi|55379986|ref|YP_137836.1| - 0.32 10.9 1.5 3.1 7.7 0.1 2.5 2 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor CENP-Q PF13094.6 gi|55379986|ref|YP_137836.1| - 0.37 11.0 15.3 0.81 9.9 15.3 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit VSG_B PF13206.6 gi|55379986|ref|YP_137836.1| - 0.37 10.0 3.4 0.54 9.5 3.4 1.2 1 0 0 1 1 1 0 Trypanosomal VSG domain Laminin_II PF06009.12 gi|55379986|ref|YP_137836.1| - 0.4 10.7 4.3 0.86 9.6 4.3 1.6 1 1 0 1 1 1 0 Laminin Domain II ADIP PF11559.8 gi|55379986|ref|YP_137836.1| - 0.43 10.7 7.5 1.1 9.4 7.5 1.7 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Atg14 PF10186.9 gi|55379986|ref|YP_137836.1| - 0.43 9.6 4.9 0.75 8.8 4.9 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|55379986|ref|YP_137836.1| - 0.44 9.9 8.0 0.1 11.9 4.8 1.6 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding Csm1_N PF18504.1 gi|55379986|ref|YP_137836.1| - 0.44 10.9 7.1 5.5 7.4 0.7 2.5 2 0 0 2 2 2 0 Csm1 N-terminal domain DUF1690 PF07956.11 gi|55379986|ref|YP_137836.1| - 0.44 11.0 6.6 0.63 10.5 5.0 2.0 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) DUF2802 PF10975.8 gi|55379986|ref|YP_137836.1| - 0.66 10.1 7.5 6 7.1 0.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) DUF4988 PF16378.5 gi|55379986|ref|YP_137836.1| - 0.75 9.4 2.3 4 7.1 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function CorA PF01544.18 gi|55379986|ref|YP_137836.1| - 0.75 9.1 5.1 0.67 9.2 3.9 1.5 2 0 0 2 2 1 0 CorA-like Mg2+ transporter protein FlxA PF14282.6 gi|55379986|ref|YP_137836.1| - 0.76 9.8 3.5 0.2 11.7 0.4 1.5 2 0 0 2 2 1 0 FlxA-like protein 5_nucleotid PF05761.14 gi|55379986|ref|YP_137836.1| - 0.76 8.6 2.4 1.2 8.0 2.4 1.2 1 0 0 1 1 1 0 5' nucleotidase family DUF5082 PF16888.5 gi|55379986|ref|YP_137836.1| - 0.9 9.8 4.9 0.74 10.1 1.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) FapA PF03961.13 gi|55379986|ref|YP_137836.1| - 0.97 8.0 2.0 1.4 7.5 2.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Mto2_bdg PF12808.7 gi|55379986|ref|YP_137836.1| - 1.3 9.3 12.1 0.073 13.4 4.1 2.6 1 1 1 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region Spc24 PF08286.11 gi|55379986|ref|YP_137836.1| - 1.6 9.0 8.7 1 9.6 4.7 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Ax_dynein_light PF10211.9 gi|55379986|ref|YP_137836.1| - 2.4 8.1 9.9 13 5.7 5.3 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain DivIC PF04977.15 gi|55379986|ref|YP_137836.1| - 3.9 7.3 12.7 1.5 8.6 4.9 3.0 2 1 1 3 3 3 0 Septum formation initiator SlyX PF04102.12 gi|55379986|ref|YP_137836.1| - 4 8.1 12.3 7.6 7.2 11.1 2.1 1 1 1 2 2 2 0 SlyX YabA PF06156.13 gi|55379986|ref|YP_137836.1| - 4.6 7.9 5.4 11 6.8 5.2 1.7 1 1 0 1 1 1 0 Initiation control protein YabA Troponin PF00992.20 gi|55379986|ref|YP_137836.1| - 4.7 7.5 12.2 10 6.4 12.1 1.6 1 1 0 1 1 1 0 Troponin FUSC PF04632.12 gi|55379986|ref|YP_137836.1| - 5 5.5 10.6 0.91 8.0 7.1 1.5 2 0 0 2 2 2 0 Fusaric acid resistance protein family betaPIX_CC PF16523.5 gi|55379986|ref|YP_137836.1| - 5.3 6.9 11.7 4.6 7.1 3.0 2.4 1 1 1 2 2 2 0 betaPIX coiled coil DUF4337 PF14235.6 gi|55379986|ref|YP_137836.1| - 5.3 7.1 8.0 8.4 6.5 8.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) GvpL_GvpF PF06386.11 gi|55379986|ref|YP_137836.1| - 5.4 6.9 12.7 1.1 9.1 9.1 1.6 2 0 0 2 2 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF2203 PF09969.9 gi|55379986|ref|YP_137836.1| - 8.3 7.2 8.9 22 5.8 5.4 2.4 2 1 1 3 3 2 0 Uncharacterized conserved protein (DUF2203) APG6_N PF17675.1 gi|55379986|ref|YP_137836.1| - 9.8 6.7 19.2 3.9 8.0 15.5 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF1611 PF07755.11 gi|55379987|ref|YP_137837.1| - 1.9e-72 242.7 1.3 2.5e-72 242.4 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|55379987|ref|YP_137837.1| - 5.1e-32 110.0 0.1 3.4e-31 107.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|55379988|ref|YP_137838.1| - 3.2e-40 138.0 3.7 4.6e-40 137.5 3.7 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|55379988|ref|YP_137838.1| - 3.1e-08 33.8 1.0 1.5e-07 31.7 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|55379988|ref|YP_137838.1| - 0.0025 17.0 0.2 0.0042 16.3 0.2 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus AhpC-TSA PF00578.21 gi|55379989|ref|YP_137839.1| - 1.4e-31 109.0 0.0 1.6e-31 108.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55379989|ref|YP_137839.1| - 2.1e-24 85.9 0.0 2.3e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|55379989|ref|YP_137839.1| - 0.0028 17.2 0.0 0.0036 16.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|55379989|ref|YP_137839.1| - 0.0039 17.3 0.0 0.45 10.6 0.0 2.1 1 1 0 2 2 2 2 AhpC/TSA antioxidant enzyme Hexapep PF00132.24 gi|55379991|ref|YP_137841.1| - 1.9e-12 46.3 13.8 0.00047 19.8 0.3 4.3 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|55379991|ref|YP_137841.1| - 8.7e-06 25.4 9.5 0.003 17.3 0.7 3.6 2 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|55379991|ref|YP_137841.1| - 0.003 16.6 0.0 0.0031 16.5 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase Usp PF00582.26 gi|55379992|ref|YP_137842.1| - 1.5e-33 116.2 3.4 1.7e-33 116.1 3.4 1.0 1 0 0 1 1 1 1 Universal stress protein family tRNA-synt_2b PF00587.25 gi|55379994|ref|YP_137844.1| - 1.1e-27 97.2 0.0 2e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|55379994|ref|YP_137844.1| - 3.8e-15 55.8 0.4 9.6e-15 54.5 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.21 gi|55379994|ref|YP_137844.1| - 5.3e-14 52.0 0.2 1.4e-13 50.7 0.2 1.8 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|55379994|ref|YP_137844.1| - 3.9e-13 49.3 0.0 7.5e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TrbI PF03743.14 gi|55379995|ref|YP_137845.1| - 0.13 12.1 0.1 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 Bacterial conjugation TrbI-like protein DAGK_cat PF00781.24 gi|55379996|ref|YP_137846.1| - 2.6e-20 72.3 0.6 4.9e-20 71.4 0.6 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain CitMHS PF03600.16 gi|55379997|ref|YP_137847.1| - 2.1e-57 194.6 14.0 2.7e-57 194.3 13.6 1.4 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|55379997|ref|YP_137847.1| - 1.5e-18 66.4 3.6 1.5e-09 37.5 0.3 3.4 3 0 0 3 3 3 3 TrkA-C domain Na_sulph_symp PF00939.19 gi|55379997|ref|YP_137847.1| - 2.5e-14 53.2 35.0 7.9e-10 38.4 15.1 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region PspA_IM30 PF04012.12 gi|55379998|ref|YP_137848.1| - 8.9e-34 117.0 39.4 8.9e-34 117.0 39.4 1.9 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.21 gi|55379998|ref|YP_137848.1| - 0.0014 18.3 22.8 0.0014 18.3 22.8 4.3 1 1 3 4 4 4 1 Snf7 ERM PF00769.19 gi|55379998|ref|YP_137848.1| - 0.0037 17.1 48.3 0.0037 17.1 48.3 1.7 1 1 0 1 1 1 1 Ezrin/radixin/moesin family DUF1664 PF07889.12 gi|55379998|ref|YP_137848.1| - 0.025 14.6 7.5 0.025 14.6 7.5 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) YabA PF06156.13 gi|55379998|ref|YP_137848.1| - 0.2 12.3 34.0 0.24 12.1 6.0 3.8 1 1 2 3 3 3 0 Initiation control protein YabA AAA_13 PF13166.6 gi|55379998|ref|YP_137848.1| - 0.67 8.5 32.6 0.25 9.9 29.4 1.6 1 1 0 1 1 1 0 AAA domain DUF3535 PF12054.8 gi|55379998|ref|YP_137848.1| - 0.7 9.1 15.6 0.83 8.8 15.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3535) FTA4 PF13093.6 gi|55379998|ref|YP_137848.1| - 0.81 9.5 33.0 0.097 12.6 6.7 3.5 1 1 2 3 3 3 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF3450 PF11932.8 gi|55379998|ref|YP_137848.1| - 1.8 7.8 45.7 0.23 10.7 8.3 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) YlqD PF11068.8 gi|55379998|ref|YP_137848.1| - 2.3 8.6 45.1 1.4 9.3 17.3 3.4 1 1 2 3 3 3 0 YlqD protein DUF948 PF06103.11 gi|55379998|ref|YP_137848.1| - 3.4 8.0 15.1 1.4 9.2 0.6 3.6 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|55379998|ref|YP_137848.1| - 4.3 5.2 17.8 19 3.0 17.7 1.8 1 1 0 1 1 1 0 Prominin FliD_N PF02465.18 gi|55379998|ref|YP_137848.1| - 7.6 7.3 23.5 2.5 8.8 8.5 3.9 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus FUSC PF04632.12 gi|55379998|ref|YP_137848.1| - 7.7 4.9 20.4 1.6 7.2 8.8 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family DLH PF01738.18 gi|55379999|ref|YP_137849.1| - 0.0022 17.6 0.1 0.003 17.2 0.1 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Thioesterase PF00975.20 gi|55379999|ref|YP_137849.1| - 0.033 14.3 1.3 0.1 12.7 1.3 1.8 1 1 0 1 1 1 0 Thioesterase domain Hydrolase_4 PF12146.8 gi|55379999|ref|YP_137849.1| - 0.069 12.4 0.6 3.7 6.7 0.2 2.1 1 1 1 2 2 2 0 Serine aminopeptidase, S33 BAAT_C PF08840.11 gi|55379999|ref|YP_137849.1| - 0.22 11.4 0.0 0.34 10.8 0.0 1.4 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|55379999|ref|YP_137849.1| - 0.31 11.6 14.2 0.59 10.7 8.6 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family Tim17 PF02466.19 gi|55380001|ref|YP_137851.1| - 0.054 13.9 0.2 0.065 13.6 0.2 1.2 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family CTP_synth_N PF06418.14 gi|55380002|ref|YP_137852.1| - 2.8e-123 410.4 0.2 3.7e-123 410.0 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|55380002|ref|YP_137852.1| - 7.2e-54 182.4 0.0 1.2e-53 181.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|55380002|ref|YP_137852.1| - 6.6e-05 22.8 0.0 0.00016 21.5 0.0 1.6 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|55380002|ref|YP_137852.1| - 0.0021 18.1 0.0 0.0032 17.5 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|55380002|ref|YP_137852.1| - 0.01 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|55380002|ref|YP_137852.1| - 0.16 11.8 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 0 DJ-1/PfpI family GMP_synt_C PF00958.22 gi|55380003|ref|YP_137853.1| - 7.2e-29 99.7 0.2 8.9e-28 96.2 0.1 2.3 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|55380003|ref|YP_137853.1| - 4.7e-10 39.0 0.0 3.5e-07 29.6 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|55380003|ref|YP_137853.1| - 0.00017 20.5 0.0 0.0026 16.6 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|55380003|ref|YP_137853.1| - 0.0023 17.4 0.0 0.0085 15.6 0.0 1.8 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|55380003|ref|YP_137853.1| - 0.026 14.2 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|55380003|ref|YP_137853.1| - 0.096 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|55380003|ref|YP_137853.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.6 1 1 0 1 1 1 0 PP-loop family TrkA_N PF02254.18 gi|55380004|ref|YP_137854.1| - 2.5e-06 27.7 0.0 2.8e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 TrkA-N domain Lactamase_B PF00753.27 gi|55380005|ref|YP_137855.1| - 2.7e-23 83.0 7.0 3.3e-23 82.7 7.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|55380005|ref|YP_137855.1| - 0.00047 19.7 0.1 0.00056 19.5 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|55380005|ref|YP_137855.1| - 0.022 14.2 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Ad_Cy_reg PF16701.5 gi|55380005|ref|YP_137855.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase regulatory domain Aldo_ket_red PF00248.21 gi|55380007|ref|YP_137857.1| - 4.9e-57 193.4 0.0 2.2e-42 145.3 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family PLAT PF01477.23 gi|55380008|ref|YP_137858.1| - 0.0079 16.8 0.1 0.022 15.3 0.1 1.9 1 1 1 2 2 2 1 PLAT/LH2 domain DHHW PF14286.6 gi|55380009|ref|YP_137859.1| - 0.013 14.8 0.2 0.02 14.2 0.2 1.2 1 0 0 1 1 1 0 DHHW protein EFP_N PF08207.12 gi|55380009|ref|YP_137859.1| - 0.12 12.4 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain ANAPC4_WD40 PF12894.7 gi|55380009|ref|YP_137859.1| - 0.13 12.5 0.0 0.32 11.3 0.0 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain MoCF_biosynth PF00994.24 gi|55380010|ref|YP_137860.1| - 2.3e-17 63.0 1.6 4.2e-17 62.2 1.6 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain LAP1C PF05609.12 gi|55380010|ref|YP_137860.1| - 2.6 7.0 18.6 3.3 6.7 18.6 1.1 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) Ndc1_Nup PF09531.10 gi|55380010|ref|YP_137860.1| - 4.8 5.8 6.1 5.5 5.5 6.1 1.2 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup HisKA_7TM PF16927.5 gi|55380012|ref|YP_137862.1| - 3e-47 161.5 20.5 3.7e-47 161.2 20.5 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|55380012|ref|YP_137862.1| - 1.6e-13 51.2 0.0 4e-13 49.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|55380012|ref|YP_137862.1| - 6.6e-12 45.7 0.6 5.3e-11 42.8 0.6 2.4 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|55380012|ref|YP_137862.1| - 7.4e-08 32.4 0.1 1.3e-07 31.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|55380012|ref|YP_137862.1| - 6.7e-07 29.3 0.0 2.2e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|55380012|ref|YP_137862.1| - 1.4e-06 28.5 0.0 3.8e-06 27.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|55380012|ref|YP_137862.1| - 6e-05 23.0 0.0 0.00025 21.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|55380012|ref|YP_137862.1| - 0.00013 21.9 0.4 0.00035 20.5 0.4 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|55380012|ref|YP_137862.1| - 0.00031 20.3 5.8 0.0013 18.3 0.2 2.7 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|55380012|ref|YP_137862.1| - 0.0071 16.2 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|55380012|ref|YP_137862.1| - 0.0084 15.8 0.5 0.018 14.7 0.5 1.6 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain adh_short PF00106.25 gi|55380013|ref|YP_137863.1| - 4.3e-43 147.0 0.1 5.7e-43 146.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|55380013|ref|YP_137863.1| - 7.7e-37 127.1 0.0 9.3e-37 126.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|55380013|ref|YP_137863.1| - 8.4e-07 29.1 0.5 5.2e-06 26.5 0.5 1.9 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|55380013|ref|YP_137863.1| - 5e-05 22.9 0.1 5.5e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NUDIX PF00293.28 gi|55380014|ref|YP_137864.1| - 1.8e-14 53.9 2.3 2.3e-14 53.5 2.3 1.1 1 0 0 1 1 1 1 NUDIX domain HTH_10 PF04967.12 gi|55380016|ref|YP_137865.1| - 2e-19 69.1 0.0 5.6e-19 67.7 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|55380016|ref|YP_137865.1| - 0.0004 20.1 1.0 0.03 14.1 0.0 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55380016|ref|YP_137865.1| - 0.00059 19.3 0.0 0.0027 17.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding BAT PF15915.5 gi|55380016|ref|YP_137865.1| - 0.0047 16.8 0.2 0.0067 16.3 0.2 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|55380016|ref|YP_137865.1| - 0.0089 15.9 0.0 0.022 14.6 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|55380016|ref|YP_137865.1| - 0.021 14.6 0.1 0.062 13.1 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PuR_N PF09182.10 gi|55380016|ref|YP_137865.1| - 0.022 14.7 0.0 0.071 13.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal HTH_20 PF12840.7 gi|55380016|ref|YP_137865.1| - 0.076 13.1 0.1 0.75 9.9 0.1 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_35 PF13693.6 gi|55380016|ref|YP_137865.1| - 0.097 12.7 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Polyketide_cyc2 PF10604.9 gi|55380015|ref|YP_137866.1| - 4.1e-08 33.6 0.1 7.2e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|55380015|ref|YP_137866.1| - 0.084 13.1 0.0 0.34 11.1 0.0 1.9 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AdoMet_Synthase PF01941.19 gi|55380017|ref|YP_137867.1| - 0.017 14.0 0.0 0.019 13.7 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) Radical_SAM PF04055.21 gi|55380018|ref|YP_137868.1| - 5.7e-20 72.4 0.0 1e-19 71.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|55380018|ref|YP_137868.1| - 2.4e-05 24.6 0.0 3.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|55380018|ref|YP_137868.1| - 0.0004 20.5 0.0 0.00088 19.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|55380018|ref|YP_137868.1| - 0.00072 20.0 0.0 0.0019 18.7 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain HTH_10 PF04967.12 gi|55380019|ref|YP_137869.1| - 1.4e-19 69.6 0.0 2.1e-19 69.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|55380019|ref|YP_137869.1| - 2.5e-13 50.2 6.2 4.7e-13 49.3 6.2 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GerE PF00196.19 gi|55380019|ref|YP_137869.1| - 0.057 13.0 0.1 0.4 10.3 0.1 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|55380019|ref|YP_137869.1| - 0.15 11.8 0.3 1.3 8.8 0.3 2.2 1 1 1 2 2 2 0 LexA DNA binding domain NDUF_B12 PF08122.12 gi|55380021|ref|YP_137871.1| - 0.015 15.3 1.8 0.04 14.0 1.8 1.7 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family HTH_5 PF01022.20 gi|55380022|ref|YP_137872.1| - 1e-09 38.1 0.0 1.6e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|55380022|ref|YP_137872.1| - 1e-09 38.3 0.0 1.4e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|55380022|ref|YP_137872.1| - 0.00025 20.8 0.0 0.00042 20.1 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MazG-like PF12643.7 gi|55380022|ref|YP_137872.1| - 0.0009 19.5 0.1 0.0023 18.1 0.1 1.6 1 1 1 2 2 2 1 MazG-like family HTH_11 PF08279.12 gi|55380022|ref|YP_137872.1| - 0.0013 18.7 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.10 gi|55380022|ref|YP_137872.1| - 0.0023 17.8 0.1 0.0037 17.2 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|55380022|ref|YP_137872.1| - 0.0082 16.0 0.0 0.018 14.9 0.0 1.5 1 1 1 2 2 2 1 MarR family Rrf2 PF02082.20 gi|55380022|ref|YP_137872.1| - 0.01 16.2 0.0 0.015 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|55380022|ref|YP_137872.1| - 0.013 15.1 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|55380022|ref|YP_137872.1| - 0.019 14.5 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|55380022|ref|YP_137872.1| - 0.026 14.3 0.1 0.085 12.6 0.0 1.8 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain FtsK_gamma PF09397.10 gi|55380022|ref|YP_137872.1| - 0.026 14.3 0.0 0.21 11.4 0.0 2.2 1 1 1 2 2 2 0 Ftsk gamma domain DUF2089 PF09862.9 gi|55380022|ref|YP_137872.1| - 0.042 13.9 0.0 0.06 13.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) Phage_rep_org_N PF09681.10 gi|55380022|ref|YP_137872.1| - 0.056 13.4 0.0 0.071 13.0 0.0 1.2 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_Crp_2 PF13545.6 gi|55380022|ref|YP_137872.1| - 0.068 13.2 0.0 0.079 13.0 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|55380022|ref|YP_137872.1| - 0.078 13.3 0.0 0.095 13.1 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor HTH_28 PF13518.6 gi|55380022|ref|YP_137872.1| - 0.087 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|55380022|ref|YP_137872.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_30 PF13556.6 gi|55380022|ref|YP_137872.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Aminotran_1_2 PF00155.21 gi|55380023|ref|YP_137873.1| - 8.2e-64 216.0 0.0 9.2e-64 215.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|55380023|ref|YP_137873.1| - 1.5e-12 47.5 0.1 2.5e-12 46.8 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|55380023|ref|YP_137873.1| - 9.9e-10 38.2 0.0 1.7e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|55380023|ref|YP_137873.1| - 2.1e-05 23.7 0.0 3.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|55380023|ref|YP_137873.1| - 5.6e-05 21.8 0.0 9e-05 21.2 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|55380023|ref|YP_137873.1| - 0.014 14.0 0.0 0.025 13.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Thiolase_N PF00108.23 gi|55380024|ref|YP_137874.1| - 1.1e-81 274.0 0.9 1.3e-81 273.8 0.4 1.3 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|55380024|ref|YP_137874.1| - 1.8e-33 114.8 2.7 3e-33 114.1 0.1 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|55380024|ref|YP_137874.1| - 0.0045 16.6 2.8 0.0076 15.8 0.4 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|55380024|ref|YP_137874.1| - 0.0098 16.0 0.1 0.04 14.1 0.1 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TPR_MLP1_2 PF07926.12 gi|55380024|ref|YP_137874.1| - 0.088 12.9 0.4 0.14 12.2 0.4 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ACP_syn_III PF08545.10 gi|55380024|ref|YP_137874.1| - 0.12 12.2 1.9 8.7 6.3 0.3 3.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Glutaredoxin2_C PF04399.13 gi|55380025|ref|YP_137875.1| - 0.07 13.0 0.1 0.07 13.0 0.1 1.0 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain HTH_24 PF13412.6 gi|55380026|ref|YP_137876.1| - 4.6e-11 42.1 0.0 7.6e-10 38.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55380026|ref|YP_137876.1| - 9.5e-11 41.4 0.3 3.1e-10 39.8 0.3 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55380026|ref|YP_137876.1| - 4.1e-08 33.0 0.0 1.2e-07 31.5 0.0 1.8 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 gi|55380026|ref|YP_137876.1| - 4.5e-07 29.8 0.0 1.2e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|55380026|ref|YP_137876.1| - 2.1e-06 28.1 0.1 4.6e-06 27.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|55380026|ref|YP_137876.1| - 0.0002 21.4 0.1 0.00056 19.9 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|55380026|ref|YP_137876.1| - 0.00031 20.6 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix Mnd1 PF03962.15 gi|55380026|ref|YP_137876.1| - 0.00039 20.7 0.0 0.00074 19.8 0.0 1.4 1 0 0 1 1 1 1 Mnd1 HTH domain HTH_13 PF11972.8 gi|55380026|ref|YP_137876.1| - 0.00058 19.9 1.3 0.00074 19.5 0.1 1.7 2 0 0 2 2 1 1 HTH DNA binding domain TrmB PF01978.19 gi|55380026|ref|YP_137876.1| - 0.0007 19.4 0.1 0.0013 18.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|55380026|ref|YP_137876.1| - 0.00091 19.0 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|55380026|ref|YP_137876.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|55380026|ref|YP_137876.1| - 0.0012 18.8 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain SMC_ScpB PF04079.16 gi|55380026|ref|YP_137876.1| - 0.0018 17.9 0.1 0.0029 17.2 0.1 1.4 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Fe_dep_repress PF01325.19 gi|55380026|ref|YP_137876.1| - 0.0022 18.1 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|55380026|ref|YP_137876.1| - 0.0023 17.7 0.6 0.28 11.0 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF4423 PF14394.6 gi|55380026|ref|YP_137876.1| - 0.0025 17.6 0.0 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) NMD3 PF04981.13 gi|55380026|ref|YP_137876.1| - 0.0046 16.5 0.0 0.0073 15.8 0.0 1.2 1 0 0 1 1 1 1 NMD3 family GntR PF00392.21 gi|55380026|ref|YP_137876.1| - 0.0058 16.2 0.1 0.016 14.8 0.1 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|55380026|ref|YP_137876.1| - 0.0064 16.8 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator TetR_C_7 PF14246.6 gi|55380026|ref|YP_137876.1| - 0.011 15.8 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain HemN_C PF06969.16 gi|55380026|ref|YP_137876.1| - 0.014 15.4 0.0 0.035 14.2 0.0 1.7 1 0 0 1 1 1 0 HemN C-terminal domain HTH_23 PF13384.6 gi|55380026|ref|YP_137876.1| - 0.022 14.5 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF4364 PF14277.6 gi|55380026|ref|YP_137876.1| - 0.032 14.0 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) AbiEi_4 PF13338.6 gi|55380026|ref|YP_137876.1| - 0.049 13.8 0.6 0.12 12.6 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Rio2_N PF09202.11 gi|55380026|ref|YP_137876.1| - 0.074 13.3 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal FaeA PF04703.12 gi|55380026|ref|YP_137876.1| - 0.094 13.1 0.2 0.52 10.7 0.0 2.3 2 0 0 2 2 2 0 FaeA-like protein HTH_1 PF00126.27 gi|55380026|ref|YP_137876.1| - 0.1 12.6 1.0 0.2 11.6 0.0 2.1 2 1 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.22 gi|55380026|ref|YP_137876.1| - 0.1 12.7 0.1 0.46 10.6 0.1 2.0 1 1 1 2 2 2 0 Helix-turn-helix LexA_DNA_bind PF01726.16 gi|55380026|ref|YP_137876.1| - 0.12 12.1 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain Mrr_N PF14338.6 gi|55380026|ref|YP_137876.1| - 0.2 11.8 0.0 0.66 10.1 0.0 1.9 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|55380026|ref|YP_137876.1| - 0.2 11.6 0.1 0.44 10.5 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain LacI PF00356.21 gi|55380026|ref|YP_137876.1| - 0.66 9.8 0.1 0.66 9.8 0.1 2.9 3 0 0 3 3 2 0 Bacterial regulatory proteins, lacI family Metallophos PF00149.28 gi|55380027|ref|YP_137877.1| - 1.8e-07 31.9 0.1 6.1e-07 30.1 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3463 PF11946.8 gi|55380027|ref|YP_137877.1| - 0.25 11.2 0.0 0.41 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) Amino_oxidase PF01593.24 gi|55380029|ref|YP_137879.1| - 8.5e-46 157.2 0.3 1e-45 156.9 0.3 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|55380029|ref|YP_137879.1| - 2.8e-16 59.5 0.3 6.7e-16 58.3 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|55380029|ref|YP_137879.1| - 4.5e-16 59.4 2.0 1.6e-07 31.3 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|55380029|ref|YP_137879.1| - 3.2e-09 36.0 0.4 4.5e-05 22.3 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|55380029|ref|YP_137879.1| - 5.6e-09 35.6 2.0 5.5e-07 29.0 1.1 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|55380029|ref|YP_137879.1| - 5.5e-07 29.1 0.8 8.2e-05 22.0 0.2 2.4 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|55380029|ref|YP_137879.1| - 6.8e-06 25.5 0.2 8.3e-05 22.0 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|55380029|ref|YP_137879.1| - 2.5e-05 24.7 0.8 0.002 18.6 0.4 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|55380029|ref|YP_137879.1| - 4.1e-05 23.1 2.2 4.1e-05 23.1 2.2 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|55380029|ref|YP_137879.1| - 0.00016 21.0 0.1 0.00027 20.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|55380029|ref|YP_137879.1| - 0.0014 18.0 0.2 0.0024 17.2 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|55380029|ref|YP_137879.1| - 0.0024 17.0 0.5 0.0038 16.4 0.5 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|55380029|ref|YP_137879.1| - 0.053 12.8 0.3 1.9 7.7 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase MCRA PF06100.11 gi|55380029|ref|YP_137879.1| - 0.063 12.1 0.0 0.13 11.0 0.0 1.4 2 0 0 2 2 2 0 MCRA family Lycopene_cycl PF05834.12 gi|55380029|ref|YP_137879.1| - 0.077 12.0 0.2 0.077 12.0 0.2 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|55380029|ref|YP_137879.1| - 0.1 11.4 0.2 0.15 10.9 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase YjeF_N PF03853.15 gi|55380029|ref|YP_137879.1| - 0.12 12.2 0.3 0.29 11.0 0.1 1.6 2 0 0 2 2 2 0 YjeF-related protein N-terminus NAD_binding_7 PF13241.6 gi|55380029|ref|YP_137879.1| - 0.13 12.7 0.1 0.34 11.4 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding FMO-like PF00743.19 gi|55380029|ref|YP_137879.1| - 0.16 10.3 0.0 0.21 9.9 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like TrkA_N PF02254.18 gi|55380029|ref|YP_137879.1| - 0.24 11.7 0.6 0.71 10.2 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|55380029|ref|YP_137879.1| - 0.48 10.4 2.8 0.47 10.4 0.3 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding PALP PF00291.25 gi|55380030|ref|YP_137880.1| - 3.3e-58 197.4 4.7 4e-58 197.1 4.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.6 gi|55380030|ref|YP_137880.1| - 0.0079 15.9 1.0 0.014 15.1 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-TFIIB PF13453.6 gi|55380030|ref|YP_137880.1| - 0.019 14.3 2.1 0.054 12.8 2.1 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger DZR PF12773.7 gi|55380030|ref|YP_137880.1| - 0.032 14.2 0.5 0.062 13.3 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|55380030|ref|YP_137880.1| - 0.059 12.8 2.0 0.13 11.7 2.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|55380030|ref|YP_137880.1| - 0.075 12.8 1.0 0.13 12.0 1.0 1.3 1 0 0 1 1 1 0 Rubredoxin metal binding domain DUF1272 PF06906.11 gi|55380030|ref|YP_137880.1| - 0.093 12.8 0.9 0.17 12.0 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zinc_ribbon_15 PF17032.5 gi|55380030|ref|YP_137880.1| - 0.19 12.5 0.6 0.27 12.0 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|55380030|ref|YP_137880.1| - 0.27 11.3 0.4 0.58 10.2 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|55380030|ref|YP_137880.1| - 0.64 9.8 2.8 11 5.8 0.1 2.5 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADH_zinc_N PF00107.26 gi|55380031|ref|YP_137881.1| - 1.7e-23 83.1 0.6 1.7e-23 83.1 0.6 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|55380031|ref|YP_137881.1| - 5.6e-21 74.5 0.4 1.1e-20 73.5 0.4 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|55380031|ref|YP_137881.1| - 2.3e-16 61.1 0.4 5.3e-16 59.9 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|55380031|ref|YP_137881.1| - 0.0065 16.5 0.2 0.015 15.4 0.2 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Usp PF00582.26 gi|55380032|ref|YP_137882.1| - 7.6e-23 81.6 0.7 8.6e-23 81.4 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|55380033|ref|YP_137883.1| - 2.2e-60 203.3 3.5 3.8e-30 105.3 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DnaJ PF00226.31 gi|55380034|ref|YP_137884.1| - 3.6e-09 36.6 0.0 6e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain PAC2 PF09754.9 gi|55380035|ref|YP_137885.1| - 3.2e-52 177.6 0.1 3.7e-52 177.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.6 gi|55380035|ref|YP_137885.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Nop10p PF04135.12 gi|55380036|ref|YP_137886.1| - 3.5e-23 81.4 0.2 3.9e-23 81.2 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family EIF_2_alpha PF07541.12 gi|55380037|ref|YP_137887.1| - 8.5e-29 100.0 0.0 1.5e-28 99.2 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|55380037|ref|YP_137887.1| - 2.3e-14 53.5 0.7 6e-14 52.1 0.7 1.7 1 0 0 1 1 1 1 S1 RNA binding domain cwf21 PF08312.12 gi|55380037|ref|YP_137887.1| - 0.086 13.0 0.1 0.086 13.0 0.1 2.2 3 0 0 3 3 3 0 cwf21 domain DUF1494 PF07379.11 gi|55380037|ref|YP_137887.1| - 0.19 11.5 0.1 0.77 9.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1494) Ribosomal_S27e PF01667.17 gi|55380038|ref|YP_137888.1| - 3.1e-18 65.2 0.4 3.2e-18 65.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|55380038|ref|YP_137888.1| - 0.00087 18.8 0.8 0.0012 18.3 0.8 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|55380038|ref|YP_137888.1| - 0.018 14.9 2.8 0.22 11.5 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|55380038|ref|YP_137888.1| - 0.019 15.0 0.5 0.021 14.8 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4969 PF16339.5 gi|55380038|ref|YP_137888.1| - 0.034 14.5 0.2 0.038 14.3 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) CpXC PF14353.6 gi|55380038|ref|YP_137888.1| - 0.035 14.1 1.1 1.7 8.7 0.1 2.1 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|55380038|ref|YP_137888.1| - 0.044 13.8 0.2 0.064 13.2 0.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55380038|ref|YP_137888.1| - 0.057 13.3 0.3 0.078 12.9 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|55380038|ref|YP_137888.1| - 0.062 12.7 2.1 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|55380038|ref|YP_137888.1| - 0.18 12.0 3.4 0.37 10.9 3.4 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L44 PF00935.19 gi|55380039|ref|YP_137889.1| - 1.5e-26 92.7 1.7 1.8e-26 92.4 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|55380039|ref|YP_137889.1| - 0.00046 19.5 0.6 0.84 9.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|55380039|ref|YP_137889.1| - 0.0037 17.1 4.1 0.4 10.6 0.5 2.3 2 0 0 2 2 2 2 SprT-like zinc ribbon domain WCCH PF03716.14 gi|55380039|ref|YP_137889.1| - 0.015 15.0 2.8 0.026 14.2 2.8 1.4 1 0 0 1 1 1 0 WCCH motif zinc_ribbon_10 PF10058.9 gi|55380039|ref|YP_137889.1| - 0.023 14.4 0.9 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Terminase_GpA PF05876.12 gi|55380039|ref|YP_137889.1| - 0.04 12.5 1.0 0.054 12.1 1.0 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-LITAF-like PF10601.9 gi|55380039|ref|YP_137889.1| - 0.083 13.2 2.8 0.58 10.5 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|55380039|ref|YP_137889.1| - 0.12 12.5 4.6 5.1 7.3 0.4 2.4 2 1 0 2 2 2 0 Zinc ribbon domain F-112 PF09645.10 gi|55380039|ref|YP_137889.1| - 0.17 12.0 0.1 0.23 11.6 0.1 1.2 1 0 0 1 1 1 0 F-112 protein zf-Mss51 PF13824.6 gi|55380039|ref|YP_137889.1| - 0.25 11.5 4.6 0.4 10.8 4.6 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2298 PF10060.9 gi|55380042|ref|YP_137892.1| - 4.2e-142 474.4 29.1 4.2e-142 474.4 29.1 1.6 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.26 gi|55380043|ref|YP_137893.1| - 1.3e-11 44.6 0.0 1.7e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|55380043|ref|YP_137893.1| - 0.13 11.8 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 GtrA PF04138.14 gi|55380044|ref|YP_137894.1| - 5.6e-22 78.2 6.5 7.4e-22 77.8 6.5 1.2 1 0 0 1 1 1 1 GtrA-like protein DUF5134 PF17197.4 gi|55380045|ref|YP_137895.1| - 0.0077 16.1 0.5 0.0091 15.9 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5134) ABC2_membrane_5 PF13346.6 gi|55380045|ref|YP_137895.1| - 0.018 14.6 0.0 0.022 14.3 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Pribosyltran PF00156.27 gi|55380046|ref|YP_137896.1| - 1.6e-12 47.2 1.6 2.1e-12 46.9 1.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|55380046|ref|YP_137896.1| - 0.0012 18.3 0.1 0.0017 17.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pilin_N PF07790.11 gi|55380049|ref|YP_137899.1| - 4.8e-29 101.1 1.8 4.8e-29 101.1 1.8 1.6 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF4834 PF16118.5 gi|55380049|ref|YP_137899.1| - 0.27 12.2 0.6 1.4 10.0 0.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) DUF4229 PF14012.6 gi|55380050|ref|YP_137900.1| - 0.0035 17.4 1.0 0.0066 16.5 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF4229) Pilin_N PF07790.11 gi|55380051|ref|YP_137901.1| - 7.3e-28 97.3 4.6 7.4e-28 97.3 2.2 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Proton_antipo_M PF00361.20 gi|55380052|ref|YP_137902.1| - 1.8e-40 139.0 12.7 5.1e-40 137.5 12.7 1.8 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|55380053|ref|YP_137903.1| - 1.2e-58 198.7 14.3 2.3e-58 197.7 14.3 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|55380053|ref|YP_137903.1| - 2.7e-06 27.3 0.4 9.6e-06 25.6 0.4 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|55380054|ref|YP_137904.1| - 1.1e-59 202.1 24.2 1.1e-59 202.1 24.2 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|55380054|ref|YP_137904.1| - 3.3e-07 29.9 12.7 3.3e-07 29.9 12.7 2.9 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|55380054|ref|YP_137904.1| - 0.3 11.2 0.1 0.3 11.2 0.1 3.6 4 0 0 4 4 4 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|55380055|ref|YP_137905.1| - 4.2e-29 100.2 1.4 5e-29 100.0 1.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2207 PF09972.9 gi|55380055|ref|YP_137905.1| - 0.19 10.5 1.1 0.23 10.2 1.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MnhB PF04039.13 gi|55380056|ref|YP_137906.1| - 4.5e-23 81.9 19.3 8.8e-23 81.0 18.9 1.6 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 gi|55380057|ref|YP_137907.1| - 1.5e-17 63.5 10.6 1.5e-17 63.5 10.6 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|55380057|ref|YP_137907.1| - 0.00023 20.9 8.0 0.00033 20.4 8.0 1.4 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF5536 PF17688.1 gi|55380057|ref|YP_137907.1| - 0.012 15.5 0.2 0.017 15.0 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5536) PhaG_MnhG_YufB PF03334.14 gi|55380058|ref|YP_137908.1| - 8e-26 90.1 8.8 9.2e-26 89.9 8.8 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|161723230|ref|YP_137909.2| - 8.7e-19 67.7 2.4 8.7e-19 67.7 2.4 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2105 PF09878.9 gi|161723230|ref|YP_137909.2| - 0.028 14.2 1.5 0.031 14.0 1.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) 3Beta_HSD PF01073.19 gi|161723230|ref|YP_137909.2| - 0.051 12.6 0.1 0.064 12.3 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family MNHE PF01899.16 gi|161723229|ref|YP_137910.2| - 1.1e-31 109.5 0.4 1.6e-31 109.0 0.4 1.3 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DFP PF04127.15 gi|55380061|ref|YP_137911.1| - 4.3e-48 163.6 4.4 1.1e-47 162.3 0.6 2.4 3 0 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|55380061|ref|YP_137911.1| - 6.4e-33 113.7 0.4 9.9e-33 113.1 0.4 1.3 1 0 0 1 1 1 1 Flavoprotein PALP PF00291.25 gi|55380061|ref|YP_137911.1| - 0.0087 15.5 1.9 0.0087 15.5 1.9 2.5 1 1 1 2 2 2 1 Pyridoxal-phosphate dependent enzyme DUF58 PF01882.18 gi|55380063|ref|YP_137913.1| - 1.1e-12 48.0 0.3 7.7e-12 45.3 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|55380063|ref|YP_137913.1| - 8.2e-11 42.1 0.8 3.5e-10 40.0 0.8 2.2 1 1 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|55380063|ref|YP_137913.1| - 4.1e-06 27.0 1.7 7.2e-06 26.2 0.1 2.2 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|55380063|ref|YP_137913.1| - 0.00079 19.7 0.0 0.0021 18.3 0.0 1.7 1 0 0 1 1 1 1 CARDB TRAP_beta PF05753.14 gi|55380063|ref|YP_137913.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) NrsF PF06532.11 gi|55380064|ref|YP_137914.1| - 0.038 13.7 0.9 0.055 13.2 0.9 1.2 1 0 0 1 1 1 0 Negative regulator of sigma F DUF4129 PF13559.6 gi|55380065|ref|YP_137915.1| - 2.9e-11 43.5 6.5 4.2e-11 42.9 6.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Peptidase_M48 PF01435.18 gi|55380066|ref|YP_137916.1| - 2.3e-28 99.3 0.0 1.6e-16 60.6 0.0 2.2 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.11 gi|55380066|ref|YP_137916.1| - 3.1e-05 23.3 1.0 0.0001 21.6 0.0 2.1 1 1 1 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|55380066|ref|YP_137916.1| - 0.055 13.3 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF4157 PF13699.6 gi|55380066|ref|YP_137916.1| - 0.061 13.6 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Pyr_redox_2 PF07992.14 gi|55380067|ref|YP_137917.1| - 3.7e-14 52.6 0.7 4.5e-07 29.4 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|55380067|ref|YP_137917.1| - 2.2e-10 40.2 3.4 2.5e-05 23.6 1.7 2.5 1 1 2 3 3 3 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|55380067|ref|YP_137917.1| - 8.5e-06 25.2 0.2 3e-05 23.4 0.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|55380067|ref|YP_137917.1| - 9.9e-06 25.4 6.5 0.067 12.8 4.2 2.6 1 1 2 3 3 3 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|55380067|ref|YP_137917.1| - 9.4e-05 21.6 0.0 0.014 14.4 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|55380067|ref|YP_137917.1| - 9.9e-05 21.6 0.1 0.00019 20.7 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|55380067|ref|YP_137917.1| - 0.00014 22.0 0.3 0.0056 16.9 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|55380067|ref|YP_137917.1| - 0.00026 20.5 1.5 0.00041 19.8 1.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|55380067|ref|YP_137917.1| - 0.00028 19.7 0.0 0.0052 15.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|55380067|ref|YP_137917.1| - 0.0013 17.7 0.1 1.3 7.8 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|55380067|ref|YP_137917.1| - 0.0018 17.6 0.1 0.0036 16.6 0.1 1.4 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|55380067|ref|YP_137917.1| - 0.0077 15.5 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|55380067|ref|YP_137917.1| - 0.013 15.4 1.6 0.71 9.9 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|55380067|ref|YP_137917.1| - 0.031 14.8 0.2 0.081 13.5 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|55380067|ref|YP_137917.1| - 0.037 13.3 1.7 0.16 11.2 1.1 1.9 1 1 1 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|55380067|ref|YP_137917.1| - 0.13 12.1 0.1 2.4 8.0 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA PF00004.29 gi|55380068|ref|YP_137918.1| - 2.1e-44 151.2 2.7 2.6e-44 150.9 0.1 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|55380068|ref|YP_137918.1| - 1.4e-12 47.2 0.9 5.3e-12 45.3 0.9 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|55380068|ref|YP_137918.1| - 2.3e-09 37.6 2.2 3.5e-09 37.0 0.0 2.5 3 0 0 3 3 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|55380068|ref|YP_137918.1| - 1.7e-07 31.1 0.1 4.2e-07 29.8 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|55380068|ref|YP_137918.1| - 9.1e-06 25.7 0.3 0.00012 22.0 0.3 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|55380068|ref|YP_137918.1| - 1.4e-05 25.6 4.5 0.022 15.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|55380068|ref|YP_137918.1| - 3.3e-05 24.3 9.4 0.00028 21.3 0.0 3.7 3 2 1 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|55380068|ref|YP_137918.1| - 3.7e-05 24.0 2.2 0.0012 19.1 0.0 2.9 2 1 1 3 3 3 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|55380068|ref|YP_137918.1| - 0.00011 22.0 0.5 0.00027 20.8 0.1 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain GrpE PF01025.19 gi|55380068|ref|YP_137918.1| - 0.00019 21.1 6.6 0.00019 21.1 6.6 2.1 2 0 0 2 2 1 1 GrpE TIP49 PF06068.13 gi|55380068|ref|YP_137918.1| - 0.00026 20.3 1.0 0.00094 18.5 0.0 2.4 2 1 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|55380068|ref|YP_137918.1| - 0.00041 19.6 0.2 0.0013 17.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|55380068|ref|YP_137918.1| - 0.00053 20.2 0.3 0.0023 18.1 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|55380068|ref|YP_137918.1| - 0.00059 19.9 0.3 0.0023 17.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|55380068|ref|YP_137918.1| - 0.00064 19.3 1.6 0.057 12.9 0.0 2.6 2 1 0 2 2 2 1 P-loop containing dynein motor region TUDOR PF00567.24 gi|55380068|ref|YP_137918.1| - 0.001 19.1 0.1 0.0033 17.4 0.1 1.9 1 0 0 1 1 1 1 Tudor domain NACHT PF05729.12 gi|55380068|ref|YP_137918.1| - 0.0013 18.6 0.2 0.042 13.8 0.0 2.5 1 1 0 2 2 2 1 NACHT domain AAA_3 PF07726.11 gi|55380068|ref|YP_137918.1| - 0.0023 17.8 0.1 0.033 14.0 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|55380068|ref|YP_137918.1| - 0.0024 18.4 2.9 0.02 15.5 0.0 2.8 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|55380068|ref|YP_137918.1| - 0.0024 17.6 0.2 0.039 13.7 0.2 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|55380068|ref|YP_137918.1| - 0.0024 17.3 0.0 0.0074 15.7 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|55380068|ref|YP_137918.1| - 0.0052 16.5 0.0 0.014 15.1 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein NB-ARC PF00931.22 gi|55380068|ref|YP_137918.1| - 0.0081 15.4 0.0 0.043 13.0 0.0 2.3 2 1 0 2 2 2 1 NB-ARC domain TsaE PF02367.17 gi|55380068|ref|YP_137918.1| - 0.0097 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|55380068|ref|YP_137918.1| - 0.0097 16.2 1.3 0.03 14.6 0.0 2.5 2 1 1 3 3 3 1 AAA domain Fmp27_WPPW PF10359.9 gi|55380068|ref|YP_137918.1| - 0.016 14.1 6.1 0.028 13.3 6.1 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain RNA_helicase PF00910.22 gi|55380068|ref|YP_137918.1| - 0.017 15.5 0.0 0.053 13.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase DUF2334 PF10096.9 gi|55380068|ref|YP_137918.1| - 0.018 14.7 0.1 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Torsin PF06309.11 gi|55380068|ref|YP_137918.1| - 0.019 15.1 0.1 0.059 13.5 0.0 1.8 2 0 0 2 2 1 0 Torsin Atg14 PF10186.9 gi|55380068|ref|YP_137918.1| - 0.023 13.8 2.2 0.033 13.3 2.2 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CPT PF07931.12 gi|55380068|ref|YP_137918.1| - 0.029 14.2 0.1 0.069 13.0 0.0 1.8 2 0 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|55380068|ref|YP_137918.1| - 0.038 13.7 0.3 0.14 11.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|55380068|ref|YP_137918.1| - 0.039 13.9 3.5 0.79 9.6 0.1 3.0 2 2 1 3 3 3 0 NTPase Cep57_CLD_2 PF14197.6 gi|55380068|ref|YP_137918.1| - 0.041 14.0 9.7 0.11 12.6 9.7 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Fungal_TACC PF12709.7 gi|55380068|ref|YP_137918.1| - 0.049 14.1 4.7 0.18 12.3 4.7 2.0 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins Creatininase PF02633.14 gi|55380068|ref|YP_137918.1| - 0.076 12.5 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Creatinine amidohydrolase bZIP_1 PF00170.21 gi|55380068|ref|YP_137918.1| - 0.087 12.9 13.5 0.18 11.9 2.7 2.8 1 1 1 2 2 2 0 bZIP transcription factor AAA_24 PF13479.6 gi|55380068|ref|YP_137918.1| - 0.088 12.5 0.1 0.088 12.5 0.1 2.6 3 2 0 3 3 2 0 AAA domain ABC_tran PF00005.27 gi|55380068|ref|YP_137918.1| - 0.093 13.2 6.2 0.24 11.9 0.0 3.0 2 1 0 2 2 1 0 ABC transporter DUF4438 PF14505.6 gi|55380068|ref|YP_137918.1| - 0.1 11.5 0.1 0.16 10.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) AAA_11 PF13086.6 gi|55380068|ref|YP_137918.1| - 0.17 11.7 0.2 0.17 11.7 0.2 2.5 1 1 2 3 3 3 0 AAA domain ATPase PF06745.13 gi|55380068|ref|YP_137918.1| - 0.27 10.5 7.5 0.89 8.9 0.0 3.4 2 1 1 3 3 3 0 KaiC DUF2075 PF09848.9 gi|55380068|ref|YP_137918.1| - 0.5 9.5 0.0 0.5 9.5 0.0 2.5 3 0 0 3 3 2 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|55380068|ref|YP_137918.1| - 0.66 9.5 12.0 0.67 9.5 0.1 4.0 3 2 1 4 4 4 0 AAA domain ADIP PF11559.8 gi|55380068|ref|YP_137918.1| - 1.1 9.3 12.3 0.15 12.1 7.6 1.8 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding DUF4407 PF14362.6 gi|55380068|ref|YP_137918.1| - 1.2 8.4 7.5 0.73 9.1 5.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) FlaC_arch PF05377.11 gi|55380068|ref|YP_137918.1| - 1.3 9.5 6.4 43 4.6 0.0 3.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|55380068|ref|YP_137918.1| - 3.8 8.2 12.1 52 4.5 9.5 3.1 1 1 1 2 2 1 0 SlyX ZapB PF06005.12 gi|55380068|ref|YP_137918.1| - 7.9 7.0 17.8 59 4.2 16.2 3.0 2 1 0 2 2 1 0 Cell division protein ZapB Csm1_N PF18504.1 gi|55380068|ref|YP_137918.1| - 8.7 6.8 13.0 3.3 8.1 3.8 3.2 2 1 1 3 3 2 0 Csm1 N-terminal domain DUF420 PF04238.12 gi|55380069|ref|YP_137919.1| - 3.7e-32 111.4 13.0 3.7e-32 111.4 13.0 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|55380069|ref|YP_137919.1| - 0.0052 17.0 4.9 0.0052 17.0 4.9 2.3 1 1 1 2 2 2 2 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.16 gi|55380069|ref|YP_137919.1| - 0.083 13.0 16.5 0.13 12.4 7.4 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 AC_N PF16214.5 gi|55380069|ref|YP_137919.1| - 2 7.5 8.8 2.4 7.2 8.8 1.1 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region HD PF01966.22 gi|55380070|ref|YP_137920.1| - 1.2e-10 41.6 1.3 3.9e-10 40.0 1.3 1.9 1 0 0 1 1 1 1 HD domain Clp_N PF02861.20 gi|55380070|ref|YP_137920.1| - 0.09 12.9 2.5 7.2 6.8 0.0 3.4 4 0 0 4 4 4 0 Clp amino terminal domain, pathogenicity island component Amidohydro_1 PF01979.20 gi|55380071|ref|YP_137921.1| - 2.5e-18 66.5 0.0 5.4e-17 62.1 0.0 2.0 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|55380071|ref|YP_137921.1| - 9.5e-11 41.6 0.0 1.3e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|55380071|ref|YP_137921.1| - 3e-05 23.7 0.1 3.6e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 Amidohydrolase family SHOCT PF09851.9 gi|55380072|ref|YP_137922.1| - 5.8e-07 29.0 0.3 5.8e-07 29.0 0.3 1.7 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.11 gi|55380072|ref|YP_137922.1| - 0.00036 20.5 4.3 0.0027 17.7 4.3 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) VbhA PF18495.1 gi|55380072|ref|YP_137922.1| - 0.0007 19.4 0.5 0.0021 17.9 0.5 1.8 1 0 0 1 1 1 1 Antitoxin VbhA Oleosin PF01277.17 gi|55380072|ref|YP_137922.1| - 0.026 14.3 2.0 0.047 13.4 2.0 1.5 1 1 0 1 1 1 0 Oleosin DUF4834 PF16118.5 gi|55380072|ref|YP_137922.1| - 0.09 13.8 1.5 0.48 11.4 1.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) SHP PF03579.13 gi|55380072|ref|YP_137922.1| - 0.81 9.7 4.9 0.92 9.5 0.5 2.1 1 1 1 2 2 2 0 Small hydrophobic protein Phage_holin_3_6 PF07332.11 gi|55380072|ref|YP_137922.1| - 0.88 9.6 10.6 1.4 9.0 10.6 1.4 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane_3 PF12698.7 gi|55380072|ref|YP_137922.1| - 2.1 7.4 11.9 2.6 7.1 11.9 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein HemY_N PF07219.13 gi|55380072|ref|YP_137922.1| - 2.6 8.3 6.9 1.3 9.3 0.2 2.3 1 1 1 2 2 2 0 HemY protein N-terminus Usp PF00582.26 gi|55380073|ref|YP_137923.1| - 3.2e-37 128.2 0.5 3.7e-37 128.0 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family FlgO PF17680.1 gi|55380073|ref|YP_137923.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 FlgO protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006396.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006396.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006396.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006396.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:38:08 2019 # [ok]