#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
TAT_signal	PF10518.4	gi|55376580|ref|YP_134431.1|	-	0.044	13.7	0.3	0.057	13.4	0.2	1.2	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Big_3_4	PF13754.1	gi|55376581|ref|YP_134432.1|	-	6.4e-05	23.2	11.5	6.4e-05	23.2	8.0	4.3	3	0	0	3	3	3	1	Bacterial	Ig-like	domain	(group	3)
Beta_helix	PF13229.1	gi|55376581|ref|YP_134432.1|	-	0.00034	20.3	6.5	0.0014	18.3	4.6	2.1	1	1	1	2	2	2	1	Right	handed	beta	helix	region
Big_3_2	PF12245.3	gi|55376581|ref|YP_134432.1|	-	0.0009	18.7	0.1	0.003	17.0	0.0	1.9	1	0	0	1	1	1	1	Bacterial	Ig-like	domain	(group	3)
DUF4625	PF15418.1	gi|55376581|ref|YP_134432.1|	-	0.012	15.7	0.1	0.038	14.1	0.0	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4625)
Sulfatase	PF00884.18	gi|55376582|ref|YP_134433.1|	-	7.5e-42	143.5	0.1	1e-41	143.1	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|55376582|ref|YP_134433.1|	-	2.8e-07	30.2	0.5	6.1e-06	25.7	0.1	2.5	2	1	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.13	gi|55376582|ref|YP_134433.1|	-	0.0027	17.1	0.0	0.0044	16.4	0.0	1.3	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Glycos_transf_2	PF00535.21	gi|55376584|ref|YP_134435.1|	-	2.2e-30	105.5	0.0	3.3e-30	104.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|55376584|ref|YP_134435.1|	-	2.6e-17	63.4	0.1	4.4e-17	62.6	0.0	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|55376584|ref|YP_134435.1|	-	5.4e-09	35.5	0.0	8.7e-09	34.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_5	PF13712.1	gi|55376584|ref|YP_134435.1|	-	0.12	11.6	0.0	0.16	11.1	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family
Beta_helix	PF13229.1	gi|55376585|ref|YP_134436.1|	-	1.5e-06	28.0	15.7	2.8e-05	23.9	6.8	2.2	2	0	0	2	2	2	2	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.2	gi|55376585|ref|YP_134436.1|	-	2.3e-05	24.6	6.2	2.3e-05	24.6	4.3	2.4	1	1	0	2	2	2	1	Pectate	lyase	superfamily	protein
EI24	PF07264.6	gi|55376586|ref|YP_134437.1|	-	0.0051	16.2	11.1	0.0069	15.8	7.7	1.1	1	0	0	1	1	1	1	Etoposide-induced	protein	2.4	(EI24)
DUF4395	PF14340.1	gi|55376586|ref|YP_134437.1|	-	0.018	15.1	4.0	0.025	14.6	2.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
Phtf-FEM1B_bdg	PF12129.3	gi|55376586|ref|YP_134437.1|	-	0.063	12.6	6.6	0.075	12.3	4.6	1.1	1	0	0	1	1	1	0	Male	germ-cell	putative	homeodomain	transcription	factor
DUF4481	PF14800.1	gi|55376586|ref|YP_134437.1|	-	0.26	10.1	4.2	0.35	9.7	2.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4481)
DUF3043	PF11241.3	gi|55376586|ref|YP_134437.1|	-	1.1	8.8	3.1	1.3	8.5	2.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
Ni_hydr_CYTB	PF01292.15	gi|55376586|ref|YP_134437.1|	-	1.4	8.3	12.8	0.79	9.0	3.9	2.0	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
DUF2868	PF11067.3	gi|55376586|ref|YP_134437.1|	-	5.8	5.9	8.4	7.2	5.6	5.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2868)
DUF4229	PF14012.1	gi|55376586|ref|YP_134437.1|	-	8.7	6.3	14.5	1.8	8.5	7.6	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
DUF3810	PF12725.2	gi|55376586|ref|YP_134437.1|	-	9	5.0	10.0	11	4.7	6.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3810)
Glycos_transf_1	PF00534.15	gi|55376587|ref|YP_134438.1|	-	1.7e-33	115.4	0.0	4.9e-33	113.9	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|55376587|ref|YP_134438.1|	-	1.3e-14	54.5	0.0	2.3e-14	53.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|55376587|ref|YP_134438.1|	-	2.1e-09	37.5	0.0	4.3e-09	36.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|55376587|ref|YP_134438.1|	-	0.087	12.5	0.0	0.59	9.8	0.0	2.1	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.15	gi|55376588|ref|YP_134439.1|	-	5.8e-36	123.4	0.0	9.7e-36	122.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|55376588|ref|YP_134439.1|	-	9.1e-20	71.1	0.0	1.6e-19	70.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|55376588|ref|YP_134439.1|	-	1.1e-19	70.8	0.0	2e-19	69.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|55376588|ref|YP_134439.1|	-	1.4e-11	44.8	0.2	2.7e-11	43.8	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|55376588|ref|YP_134439.1|	-	2.5e-08	34.0	0.0	3.1e-07	30.5	0.0	2.6	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
DUF1616	PF07760.6	gi|55376589|ref|YP_134440.1|	-	2e-77	260.1	0.1	2.3e-77	259.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
TMEM125	PF15109.1	gi|55376589|ref|YP_134440.1|	-	1.2	9.3	4.9	2.4	8.3	2.7	2.1	1	1	1	2	2	2	0	TMEM125	protein	family
DUF2910	PF11139.3	gi|55376589|ref|YP_134440.1|	-	1.2	8.1	11.8	0.15	11.1	2.2	2.6	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2910)
Epimerase_2	PF02350.14	gi|55376590|ref|YP_134441.1|	-	1.3e-100	336.5	0.0	1.5e-100	336.3	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.1	gi|55376590|ref|YP_134441.1|	-	0.0075	16.4	0.6	0.075	13.1	0.0	2.6	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
DUF354	PF04007.7	gi|55376590|ref|YP_134441.1|	-	0.046	12.5	0.0	0.074	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF354)
Glyco_transf_4	PF13439.1	gi|55376590|ref|YP_134441.1|	-	0.09	12.4	0.0	0.28	10.8	0.0	1.9	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
UDPG_MGDP_dh	PF00984.14	gi|55376591|ref|YP_134442.1|	-	2.5e-21	75.7	0.0	4.1e-21	74.9	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_N	PF03721.9	gi|55376591|ref|YP_134442.1|	-	3e-21	75.6	0.0	5.4e-21	74.8	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh_C	PF03720.10	gi|55376591|ref|YP_134442.1|	-	5.4e-16	58.6	0.0	1.8e-15	57.0	0.0	1.9	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Glycos_transf_2	PF00535.21	gi|55376592|ref|YP_134443.1|	-	4e-26	91.7	0.0	5.9e-26	91.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|55376592|ref|YP_134443.1|	-	6.6e-10	39.1	0.0	1.2e-09	38.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|55376592|ref|YP_134443.1|	-	5.2e-06	26.6	0.1	0.00016	21.9	0.0	2.6	2	1	0	2	2	2	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.2	gi|55376592|ref|YP_134443.1|	-	0.0016	18.5	0.0	0.0057	16.7	0.0	1.8	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Epimerase	PF01370.16	gi|55376593|ref|YP_134444.1|	-	1.7e-62	210.9	0.0	2e-62	210.6	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|55376593|ref|YP_134444.1|	-	2.5e-22	78.9	0.0	3.3e-22	78.4	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|55376593|ref|YP_134444.1|	-	5e-21	74.8	0.2	3.4e-19	68.8	0.1	2.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.12	gi|55376593|ref|YP_134444.1|	-	2e-18	66.3	0.0	2.4e-18	66.0	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|55376593|ref|YP_134444.1|	-	2.6e-13	49.5	0.1	7.6e-11	41.4	0.0	2.1	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|55376593|ref|YP_134444.1|	-	2.5e-12	47.1	1.2	2.5e-12	47.1	0.9	1.7	2	1	0	2	2	2	1	NADH(P)-binding
adh_short	PF00106.20	gi|55376593|ref|YP_134444.1|	-	4.8e-09	36.3	0.7	1e-08	35.2	0.5	1.5	1	0	0	1	1	1	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|55376593|ref|YP_134444.1|	-	2e-06	27.2	0.1	4.8e-06	26.0	0.0	1.6	2	0	0	2	2	2	1	NmrA-like	family
Ldh_1_N	PF00056.18	gi|55376593|ref|YP_134444.1|	-	0.0012	18.7	0.1	0.036	13.8	0.1	2.2	2	0	0	2	2	2	1	lactate/malate	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|55376593|ref|YP_134444.1|	-	0.0021	18.0	0.5	0.0065	16.4	0.1	1.9	2	0	0	2	2	2	1	TrkA-N	domain
Epimerase_Csub	PF13950.1	gi|55376593|ref|YP_134444.1|	-	0.0043	16.9	0.0	0.008	16.1	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose	4-epimerase	C-term	subunit
KR	PF08659.5	gi|55376593|ref|YP_134444.1|	-	0.054	13.1	3.7	1.4	8.5	2.6	2.8	1	1	0	1	1	1	0	KR	domain
Varsurf_PPLC	PF03490.8	gi|55376593|ref|YP_134444.1|	-	0.33	10.6	2.3	0.37	10.4	0.1	2.1	2	0	0	2	2	2	0	Variant-surface-glycoprotein	phospholipase	C
DUF4147	PF13660.1	gi|55376594|ref|YP_134445.1|	-	9.4e-75	250.7	0.8	1.6e-74	250.0	0.5	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|55376594|ref|YP_134445.1|	-	3.5e-24	84.9	4.2	1e-23	83.4	2.9	1.8	1	0	0	1	1	1	1	MOFRL	family
DUF2088	PF09861.4	gi|55376595|ref|YP_134446.1|	-	2.5e-05	23.3	0.0	4.4e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2088)
DUF162	PF02589.10	gi|55376596|ref|YP_134447.1|	-	1.2e-40	139.0	1.4	2.4e-40	138.0	1.0	1.5	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|55376596|ref|YP_134447.1|	-	3.4e-09	36.5	4.0	6.7e-09	35.6	2.8	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|55376596|ref|YP_134447.1|	-	3.8e-08	33.6	5.6	5.7e-06	26.6	0.5	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|55376596|ref|YP_134447.1|	-	6.7e-07	29.5	2.5	1.3e-06	28.6	1.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|55376596|ref|YP_134447.1|	-	1.8e-06	28.2	6.1	4.1e-06	27.0	4.2	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|55376596|ref|YP_134447.1|	-	1.3e-05	24.9	9.2	0.00072	19.3	7.7	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|55376596|ref|YP_134447.1|	-	3.7e-05	23.3	12.4	5.7e-05	22.8	1.9	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|55376596|ref|YP_134447.1|	-	7.7e-05	22.1	13.5	0.0001	21.7	2.2	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|55376596|ref|YP_134447.1|	-	0.00014	22.0	10.3	0.0014	18.8	7.4	2.2	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|55376596|ref|YP_134447.1|	-	0.00028	20.6	9.4	0.0016	18.2	6.5	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|55376596|ref|YP_134447.1|	-	0.00065	19.4	11.8	0.0082	16.0	2.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
UL40	PF10682.4	gi|55376596|ref|YP_134447.1|	-	0.0018	17.8	0.1	0.0031	17.0	0.1	1.3	1	0	0	1	1	1	1	Glycoprotein	of	human	cytomegalovirus	HHV-5
Fer4_4	PF12800.2	gi|55376596|ref|YP_134447.1|	-	0.017	15.4	14.4	0.04	14.2	2.5	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|55376596|ref|YP_134447.1|	-	0.04	13.5	2.8	0.13	11.8	0.1	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.2	gi|55376596|ref|YP_134447.1|	-	0.055	14.0	18.2	0.038	14.5	4.5	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|55376596|ref|YP_134447.1|	-	1.8	9.2	7.9	0.39	11.3	0.2	3.5	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|55376596|ref|YP_134447.1|	-	2.4	8.9	12.3	0.75	10.5	1.9	2.3	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
DUF162	PF02589.10	gi|55376597|ref|YP_134448.1|	-	4.1e-23	81.8	1.9	1.5e-22	80.0	1.3	1.7	1	1	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
TraT	PF05818.7	gi|55376597|ref|YP_134448.1|	-	0.37	10.1	2.2	0.55	9.6	0.2	2.0	1	1	1	2	2	2	0	Enterobacterial	TraT	complement	resistance	protein
HEAT_2	PF13646.1	gi|55376598|ref|YP_134449.1|	-	9.7e-07	28.9	1.3	0.00088	19.5	0.0	2.2	1	1	1	2	2	2	2	HEAT	repeats
HEAT_EZ	PF13513.1	gi|55376598|ref|YP_134449.1|	-	2e-06	28.1	1.1	0.089	13.3	0.0	2.6	2	1	1	3	3	3	2	HEAT-like	repeat
HEAT	PF02985.17	gi|55376598|ref|YP_134449.1|	-	0.05	13.6	0.5	1	9.6	0.0	2.9	3	1	0	3	3	3	0	HEAT	repeat
Utp21	PF04192.7	gi|55376598|ref|YP_134449.1|	-	0.064	12.3	0.0	0.086	11.9	0.0	1.2	1	0	0	1	1	1	0	Utp21	specific	WD40	associated	putative	domain
TPR_16	PF13432.1	gi|55376598|ref|YP_134449.1|	-	0.59	10.8	4.9	4.5	8.0	0.8	2.6	2	1	1	3	3	3	0	Tetratricopeptide	repeat
IclR	PF01614.13	gi|55376599|ref|YP_134450.1|	-	1.9e-31	108.4	0.0	7.8e-30	103.2	0.0	2.2	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|55376599|ref|YP_134450.1|	-	1.4e-10	40.5	0.2	4.2e-10	39.0	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376599|ref|YP_134450.1|	-	1.6e-06	27.6	0.0	3.3e-06	26.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|55376599|ref|YP_134450.1|	-	3.3e-05	23.4	0.1	7.9e-05	22.2	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|55376599|ref|YP_134450.1|	-	3.4e-05	23.4	0.1	7.5e-05	22.3	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|55376599|ref|YP_134450.1|	-	0.00012	21.6	0.1	0.00058	19.4	0.0	2.1	3	0	0	3	3	3	1	HTH	domain
HTH_20	PF12840.2	gi|55376599|ref|YP_134450.1|	-	0.00019	21.1	0.0	0.0005	19.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376599|ref|YP_134450.1|	-	0.0054	16.1	0.0	0.015	14.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|55376599|ref|YP_134450.1|	-	0.0063	16.6	0.1	0.013	15.6	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|55376599|ref|YP_134450.1|	-	0.01	15.7	0.2	0.032	14.1	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FaeA	PF04703.7	gi|55376599|ref|YP_134450.1|	-	0.011	15.8	0.1	0.053	13.6	0.0	1.9	2	0	0	2	2	2	0	FaeA-like	protein
ANT	PF03374.9	gi|55376599|ref|YP_134450.1|	-	0.012	15.6	0.0	0.022	14.7	0.0	1.3	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
HTH_27	PF13463.1	gi|55376599|ref|YP_134450.1|	-	0.045	14.0	0.0	0.11	12.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|55376599|ref|YP_134450.1|	-	0.067	13.2	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|55376599|ref|YP_134450.1|	-	0.12	11.9	0.0	0.38	10.3	0.0	1.8	2	0	0	2	2	2	0	LexA	DNA	binding	domain
ADH_N	PF08240.7	gi|55376600|ref|YP_134451.1|	-	3.4e-34	116.9	2.6	3.4e-34	116.9	1.8	2.1	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|55376600|ref|YP_134451.1|	-	5.1e-22	77.8	0.0	7.3e-22	77.2	0.0	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
F420_oxidored	PF03807.12	gi|55376600|ref|YP_134451.1|	-	0.00019	21.7	0.0	0.00036	20.8	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ADH_zinc_N_2	PF13602.1	gi|55376600|ref|YP_134451.1|	-	0.0019	19.1	0.0	0.0039	18.0	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
TrkA_N	PF02254.13	gi|55376600|ref|YP_134451.1|	-	0.012	15.5	0.0	0.026	14.5	0.0	1.5	1	0	0	1	1	1	0	TrkA-N	domain
EF-hand_7	PF13499.1	gi|55376600|ref|YP_134451.1|	-	0.052	13.6	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	EF-hand	domain	pair
Pyr_redox	PF00070.22	gi|55376600|ref|YP_134451.1|	-	0.13	12.7	0.2	0.69	10.3	0.1	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
SBP_bac_1	PF01547.20	gi|55376601|ref|YP_134452.1|	-	5.2e-24	85.5	4.0	7.8e-24	84.9	2.7	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|55376601|ref|YP_134452.1|	-	0.018	14.6	0.1	1.8	8.1	0.0	2.9	3	0	0	3	3	3	0	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|55376601|ref|YP_134452.1|	-	0.038	14.0	0.4	0.082	12.9	0.3	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.17	gi|55376602|ref|YP_134453.1|	-	1.8e-18	66.7	21.4	1.8e-18	66.7	14.9	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|55376603|ref|YP_134454.1|	-	2.7e-17	62.8	19.3	2.7e-17	62.8	13.4	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|55376604|ref|YP_134455.1|	-	5.4e-32	110.9	0.0	1.1e-31	109.8	0.0	1.5	2	0	0	2	2	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|55376604|ref|YP_134455.1|	-	1.1e-10	41.3	0.2	3.5e-10	39.7	0.1	1.9	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.1	gi|55376604|ref|YP_134455.1|	-	2.1e-10	41.0	0.0	0.00048	20.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|55376604|ref|YP_134455.1|	-	5.8e-05	23.1	0.4	0.0025	17.8	0.0	3.1	3	0	0	3	3	2	1	TOBE	domain
SMC_N	PF02463.14	gi|55376604|ref|YP_134455.1|	-	0.00021	20.5	0.1	0.00043	19.5	0.1	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|55376604|ref|YP_134455.1|	-	0.00024	20.2	0.0	0.00048	19.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|55376604|ref|YP_134455.1|	-	0.00028	21.7	0.0	0.00093	20.0	0.0	1.9	1	1	1	2	2	1	1	AAA	domain
AAA_15	PF13175.1	gi|55376604|ref|YP_134455.1|	-	0.00032	19.8	0.0	0.02	13.9	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|55376604|ref|YP_134455.1|	-	0.00037	19.9	0.0	0.00077	18.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|55376604|ref|YP_134455.1|	-	0.00045	20.1	0.0	0.0022	17.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|55376604|ref|YP_134455.1|	-	0.0022	18.0	0.0	0.0055	16.6	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55376604|ref|YP_134455.1|	-	0.0033	17.5	0.0	0.0086	16.2	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
MobB	PF03205.9	gi|55376604|ref|YP_134455.1|	-	0.0043	16.7	0.0	0.0085	15.8	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_25	PF13481.1	gi|55376604|ref|YP_134455.1|	-	0.0053	16.1	0.6	0.042	13.2	0.4	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|55376604|ref|YP_134455.1|	-	0.0067	15.9	0.0	0.012	15.0	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
AAA_23	PF13476.1	gi|55376604|ref|YP_134455.1|	-	0.015	15.5	0.0	0.031	14.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|55376604|ref|YP_134455.1|	-	0.016	15.4	0.0	0.036	14.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|55376604|ref|YP_134455.1|	-	0.024	14.8	0.0	0.11	12.7	0.0	2.0	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|55376604|ref|YP_134455.1|	-	0.029	13.4	0.0	0.46	9.5	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
AAA_28	PF13521.1	gi|55376604|ref|YP_134455.1|	-	0.033	14.1	0.0	0.084	12.8	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
PQQ_2	PF13360.1	gi|55376604|ref|YP_134455.1|	-	0.071	12.5	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	PQQ-like	domain
RNA_helicase	PF00910.17	gi|55376604|ref|YP_134455.1|	-	0.12	12.5	0.1	0.33	11.1	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
Aldolase_II	PF00596.16	gi|55376605|ref|YP_134456.1|	-	1.4e-48	164.9	0.2	1.7e-48	164.6	0.2	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_C	PF02782.11	gi|55376606|ref|YP_134457.1|	-	8e-27	94.1	0.0	1.2e-26	93.5	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FGGY_N	PF00370.16	gi|55376606|ref|YP_134457.1|	-	6.4e-18	64.9	0.0	9.1e-18	64.4	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
adh_short	PF00106.20	gi|55376607|ref|YP_134458.1|	-	9.6e-35	119.9	1.6	1.3e-34	119.5	1.1	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|55376607|ref|YP_134458.1|	-	2.3e-34	119.2	0.1	2.8e-34	118.9	0.1	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|55376607|ref|YP_134458.1|	-	1.8e-13	50.5	1.1	2.8e-13	49.9	0.8	1.2	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|55376607|ref|YP_134458.1|	-	0.00021	21.3	0.8	0.00035	20.6	0.6	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Epimerase	PF01370.16	gi|55376607|ref|YP_134458.1|	-	0.00069	19.1	0.2	0.0009	18.7	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.14	gi|55376607|ref|YP_134458.1|	-	0.032	12.9	0.4	0.041	12.5	0.3	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Choline_kin_N	PF04428.9	gi|55376607|ref|YP_134458.1|	-	0.06	12.8	0.0	0.3	10.5	0.0	2.1	2	0	0	2	2	2	0	Choline	kinase	N	terminus
MR_MLE_C	PF13378.1	gi|55376608|ref|YP_134459.1|	-	5.5e-32	110.0	0.0	1.1e-31	109.0	0.0	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|55376608|ref|YP_134459.1|	-	1.9e-21	76.1	0.0	4.1e-21	75.1	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MR_MLE	PF01188.16	gi|55376608|ref|YP_134459.1|	-	2.1e-13	50.5	0.1	5.3e-13	49.2	0.1	1.7	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
ADH_zinc_N	PF00107.21	gi|55376609|ref|YP_134460.1|	-	2.4e-32	111.1	0.7	3.5e-32	110.6	0.5	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|55376609|ref|YP_134460.1|	-	4.3e-32	110.1	0.2	7.8e-32	109.2	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|55376609|ref|YP_134460.1|	-	0.00013	22.8	1.0	0.00025	21.9	0.7	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_3	PF03447.11	gi|55376609|ref|YP_134460.1|	-	0.012	15.9	1.3	0.021	15.2	0.9	1.4	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|55376609|ref|YP_134460.1|	-	0.019	14.1	0.0	0.033	13.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Tsp45I	PF06300.7	gi|55376609|ref|YP_134460.1|	-	0.13	11.6	0.0	0.19	11.1	0.0	1.2	1	0	0	1	1	1	0	Tsp45I	type	II	restriction	enzyme
Bac_luciferase	PF00296.15	gi|55376610|ref|YP_134461.1|	-	7e-33	114.0	3.4	8e-33	113.8	2.4	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF2309	PF10070.4	gi|55376611|ref|YP_134462.1|	-	1.7e-256	853.2	0.0	3.4e-256	852.2	0.0	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Oxidored_q1	PF00361.15	gi|55376612|ref|YP_134463.1|	-	5.4e-31	107.8	11.3	5.4e-31	107.8	7.9	1.9	3	0	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|55376612|ref|YP_134463.1|	-	0.00023	20.6	0.1	0.00063	19.2	0.1	1.7	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
HTH_24	PF13412.1	gi|55376613|ref|YP_134464.1|	-	1.9e-13	49.5	0.2	2.8e-13	49.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|55376613|ref|YP_134464.1|	-	5.7e-11	41.7	0.8	1.2e-10	40.7	0.6	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|55376613|ref|YP_134464.1|	-	8.4e-06	25.4	0.0	1.9e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|55376613|ref|YP_134464.1|	-	1e-05	25.0	0.0	2e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.7	gi|55376613|ref|YP_134464.1|	-	0.0001	21.7	0.1	0.0042	16.5	0.0	2.2	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376613|ref|YP_134464.1|	-	0.00018	21.0	0.0	0.00037	20.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|55376613|ref|YP_134464.1|	-	0.00021	20.8	0.0	0.00038	19.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|55376613|ref|YP_134464.1|	-	0.00046	20.2	0.0	0.0011	19.0	0.0	1.6	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|55376613|ref|YP_134464.1|	-	0.00057	19.4	0.0	0.00098	18.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.14	gi|55376613|ref|YP_134464.1|	-	0.0012	18.7	0.0	0.0024	17.7	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.1	gi|55376613|ref|YP_134464.1|	-	0.0014	18.8	0.1	0.0087	16.3	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Sigma70_r4_2	PF08281.7	gi|55376613|ref|YP_134464.1|	-	0.0026	17.1	0.0	0.0048	16.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Mga	PF08280.6	gi|55376613|ref|YP_134464.1|	-	0.024	14.3	0.0	0.039	13.7	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Tnp_ISL3	PF13542.1	gi|55376613|ref|YP_134464.1|	-	0.037	13.1	0.1	0.082	12.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR	PF01047.17	gi|55376613|ref|YP_134464.1|	-	0.057	13.1	0.0	0.17	11.6	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_23	PF13384.1	gi|55376613|ref|YP_134464.1|	-	0.15	11.7	0.0	0.33	10.6	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
Peripla_BP_2	PF01497.13	gi|55376614|ref|YP_134465.1|	-	1.4e-13	50.5	0.0	2e-13	50.0	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|55376614|ref|YP_134465.1|	-	0.023	14.6	0.0	0.057	13.4	0.0	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peripla_BP_2	PF01497.13	gi|55376615|ref|YP_134466.1|	-	1.4e-19	70.2	0.0	2.5e-19	69.3	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
YqgF	PF14639.1	gi|55376615|ref|YP_134466.1|	-	0.038	13.5	0.0	0.067	12.7	0.0	1.4	1	0	0	1	1	1	0	Holliday-junction	resolvase-like	of	SPT6
Peripla_BP_2	PF01497.13	gi|55376616|ref|YP_134467.1|	-	3.3e-17	62.4	0.0	1.2e-16	60.5	0.0	1.8	1	1	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.4	gi|55376616|ref|YP_134467.1|	-	0.024	14.6	0.7	0.048	13.6	0.5	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Sugar_tr	PF00083.19	gi|55376617|ref|YP_134468.1|	-	9.6e-125	416.6	25.1	1.1e-124	416.4	17.4	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|55376617|ref|YP_134468.1|	-	1.6e-38	132.3	66.7	1.3e-29	103.0	22.0	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TRI12	PF06609.8	gi|55376617|ref|YP_134468.1|	-	2.1e-07	29.5	3.4	2.1e-07	29.5	2.4	2.1	2	0	0	2	2	2	1	Fungal	trichothecene	efflux	pump	(TRI12)
MFS_2	PF13347.1	gi|55376617|ref|YP_134468.1|	-	0.011	14.1	35.9	0.013	13.9	2.9	3.9	3	1	1	4	4	4	0	MFS/sugar	transport	protein
MFS_3	PF05977.8	gi|55376617|ref|YP_134468.1|	-	0.05	11.7	18.9	0.0073	14.4	5.4	2.2	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Bac_export_3	PF01313.14	gi|55376617|ref|YP_134468.1|	-	0.09	12.4	7.9	0.065	12.9	1.4	3.8	2	1	0	2	2	2	0	Bacterial	export	proteins,	family	3
MFS_1_like	PF12832.2	gi|55376617|ref|YP_134468.1|	-	0.14	11.9	4.6	2.4	7.9	0.1	3.3	3	0	0	3	3	3	0	MFS_1	like	family
Fructosamin_kin	PF03881.9	gi|55376618|ref|YP_134469.1|	-	4.4e-43	147.3	0.0	5.9e-43	146.9	0.0	1.0	1	0	0	1	1	1	1	Fructosamine	kinase
APH	PF01636.18	gi|55376618|ref|YP_134469.1|	-	1.2e-13	51.4	6.4	1.6e-13	50.9	4.4	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
APH_6_hur	PF04655.9	gi|55376618|ref|YP_134469.1|	-	0.034	13.2	0.3	0.083	12.0	0.0	1.7	2	0	0	2	2	2	0	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
HTH_20	PF12840.2	gi|55376619|ref|YP_134470.1|	-	2.7e-11	43.1	0.1	3.7e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376619|ref|YP_134470.1|	-	1.7e-07	30.8	0.0	3.1e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|55376619|ref|YP_134470.1|	-	7.3e-07	28.4	0.0	1.1e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55376619|ref|YP_134470.1|	-	1.3e-06	27.9	0.0	2.8e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|55376619|ref|YP_134470.1|	-	8.2e-05	22.8	0.0	0.00014	22.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
B-block_TFIIIC	PF04182.7	gi|55376619|ref|YP_134470.1|	-	0.00098	18.9	0.0	0.0013	18.5	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
DUF2513	PF10711.4	gi|55376619|ref|YP_134470.1|	-	0.0026	17.8	0.0	0.0035	17.4	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
TrmB	PF01978.14	gi|55376619|ref|YP_134470.1|	-	0.0049	16.5	0.0	0.0086	15.7	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|55376619|ref|YP_134470.1|	-	0.0099	15.5	0.0	0.02	14.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|55376620|ref|YP_134471.1|	-	7.9e-07	28.6	0.5	2.3e-06	27.1	0.0	2.0	2	1	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|55376620|ref|YP_134471.1|	-	4e-06	26.3	0.0	1.1e-05	24.8	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|55376620|ref|YP_134471.1|	-	0.00027	20.5	0.0	0.00056	19.5	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|55376620|ref|YP_134471.1|	-	0.00064	19.3	0.0	0.0014	18.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|55376620|ref|YP_134471.1|	-	0.0012	19.1	0.0	0.0059	16.9	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
RP-C	PF03428.8	gi|55376620|ref|YP_134471.1|	-	0.0063	15.9	0.4	0.034	13.5	0.0	2.2	3	0	0	3	3	3	1	Replication	protein	C	N-terminal	domain
Sulfolobus_pRN	PF05584.6	gi|55376620|ref|YP_134471.1|	-	0.0097	15.8	0.0	0.019	14.9	0.0	1.4	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
HTH_20	PF12840.2	gi|55376620|ref|YP_134471.1|	-	0.01	15.6	0.0	0.026	14.3	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF3398	PF11878.3	gi|55376620|ref|YP_134471.1|	-	0.011	15.4	0.2	0.018	14.8	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3398)
Rrf2	PF02082.15	gi|55376620|ref|YP_134471.1|	-	0.036	14.1	0.0	0.075	13.1	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
GntR	PF00392.16	gi|55376620|ref|YP_134471.1|	-	0.043	13.2	0.0	0.21	11.0	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.15	gi|55376620|ref|YP_134471.1|	-	0.1	12.2	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF2842	PF11003.3	gi|55376623|ref|YP_134474.1|	-	0.0013	18.5	2.0	0.014	15.2	1.4	2.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2842)
TcpE	PF12648.2	gi|55376623|ref|YP_134474.1|	-	5.5	7.1	6.6	0.52	10.4	0.2	2.5	3	0	0	3	3	3	0	TcpE	family
ABC_tran	PF00005.22	gi|55376624|ref|YP_134475.1|	-	2.1e-24	86.3	0.0	3e-24	85.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376624|ref|YP_134475.1|	-	4.5e-14	53.0	0.0	4.8e-09	36.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|55376624|ref|YP_134475.1|	-	4.1e-06	26.1	0.0	0.00012	21.2	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
ArgK	PF03308.11	gi|55376624|ref|YP_134475.1|	-	0.001	17.9	0.1	0.0015	17.3	0.1	1.2	1	0	0	1	1	1	1	ArgK	protein
SMC_N	PF02463.14	gi|55376624|ref|YP_134475.1|	-	0.0011	18.1	0.2	0.62	9.2	0.0	2.4	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|55376624|ref|YP_134475.1|	-	0.0055	16.1	0.0	0.96	8.8	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
AAA_23	PF13476.1	gi|55376624|ref|YP_134475.1|	-	0.0061	16.9	0.1	0.0091	16.3	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|55376624|ref|YP_134475.1|	-	0.015	15.4	0.4	1	9.5	0.1	2.7	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF148	PF02520.12	gi|55376624|ref|YP_134475.1|	-	0.025	14.3	0.0	0.041	13.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF148
AAA_30	PF13604.1	gi|55376624|ref|YP_134475.1|	-	0.026	14.1	0.1	0.17	11.4	0.0	2.1	2	1	1	3	3	3	0	AAA	domain
AAA_29	PF13555.1	gi|55376624|ref|YP_134475.1|	-	0.027	13.9	0.2	0.052	13.0	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_13	PF13166.1	gi|55376624|ref|YP_134475.1|	-	0.051	12.0	0.0	2.7	6.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|55376624|ref|YP_134475.1|	-	0.068	13.1	0.0	0.13	12.1	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.1	gi|55376624|ref|YP_134475.1|	-	0.075	12.4	0.3	3	7.2	0.1	2.5	1	1	1	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|55376624|ref|YP_134475.1|	-	0.13	11.7	0.0	0.26	10.7	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.12	gi|55376624|ref|YP_134475.1|	-	0.13	11.7	0.1	0.32	10.4	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
zf-C2HC5	PF06221.8	gi|55376625|ref|YP_134476.1|	-	0.24	11.1	1.1	0.45	10.3	0.8	1.4	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
Nitroreductase	PF00881.19	gi|55376626|ref|YP_134477.1|	-	1e-21	77.4	0.0	1.2e-21	77.1	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
PepSY	PF03413.14	gi|55376628|ref|YP_134479.1|	-	0.01	16.4	2.0	0.088	13.4	0.0	2.8	3	0	0	3	3	3	1	Peptidase	propeptide	and	YPEB	domain
Aurora-A_bind	PF09041.5	gi|55376628|ref|YP_134479.1|	-	0.11	12.2	0.5	0.38	10.5	0.0	2.1	2	0	0	2	2	2	0	Aurora-A	binding
DAP_C	PF07932.7	gi|55376629|ref|YP_134480.1|	-	0.059	13.5	0.0	6.2	7.0	0.0	2.5	1	1	1	2	2	2	0	D-aminopeptidase,	domain	C
DsbD	PF02683.10	gi|55376630|ref|YP_134481.1|	-	3.4e-12	46.4	15.2	4.8e-12	45.9	10.6	1.2	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Redoxin	PF08534.5	gi|55376631|ref|YP_134482.1|	-	5.8e-08	32.4	0.0	6.9e-08	32.1	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|55376631|ref|YP_134482.1|	-	6.9e-08	32.5	0.0	9.7e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|55376631|ref|YP_134482.1|	-	2e-06	27.4	0.0	2.7e-06	27.0	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin	PF00085.15	gi|55376631|ref|YP_134482.1|	-	6.1e-05	22.6	0.0	0.0008	19.0	0.0	2.0	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|55376631|ref|YP_134482.1|	-	0.001	19.2	0.0	0.0014	18.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
SCO1-SenC	PF02630.9	gi|55376632|ref|YP_134483.1|	-	5e-12	45.7	0.0	6.7e-12	45.3	0.0	1.1	1	0	0	1	1	1	1	SCO1/SenC
TAT_signal	PF10518.4	gi|55376632|ref|YP_134483.1|	-	0.032	14.2	3.5	0.058	13.4	2.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
AhpC-TSA	PF00578.16	gi|55376632|ref|YP_134483.1|	-	0.042	13.5	0.0	0.48	10.1	0.0	2.4	1	1	0	1	1	1	0	AhpC/TSA	family
FmdA_AmdA	PF03069.10	gi|161723228|ref|YP_134484.2|	-	2.9e-132	440.8	0.0	4.5e-132	440.2	0.0	1.2	1	0	0	1	1	1	1	Acetamidase/Formamidase	family
Cpn60_TCP1	PF00118.19	gi|55376634|ref|YP_134485.1|	-	5.4e-135	450.7	0.0	6.1e-135	450.5	0.0	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Nitro_FeMo-Co	PF02579.12	gi|55376634|ref|YP_134485.1|	-	0.032	14.2	1.2	0.073	13.1	0.2	2.1	2	0	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
Usp	PF00582.21	gi|55376635|ref|YP_134486.1|	-	1.6e-08	34.8	0.7	4.9e-06	26.7	0.0	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
AA_permease_2	PF13520.1	gi|55376636|ref|YP_134487.1|	-	1.1e-45	156.0	40.1	1.3e-45	155.7	27.8	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|55376636|ref|YP_134487.1|	-	2.7e-44	151.2	41.0	3.4e-44	150.9	28.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.8	gi|55376636|ref|YP_134487.1|	-	0.21	10.1	17.9	0.13	10.9	10.0	2.3	2	1	0	2	2	2	0	Spore	germination	protein
AA_permease_C	PF13906.1	gi|55376636|ref|YP_134487.1|	-	7.6	6.4	15.2	0.095	12.5	3.8	3.0	3	0	0	3	3	3	0	C-terminus	of	AA_permease
Prok-JAB	PF14464.1	gi|55376637|ref|YP_134488.1|	-	1.1e-07	31.3	0.2	1.9e-07	30.6	0.2	1.3	1	1	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
SSF	PF00474.12	gi|55376638|ref|YP_134489.1|	-	1e-27	96.8	36.4	1.5e-26	92.9	19.2	2.4	2	1	0	2	2	2	2	Sodium:solute	symporter	family
Antitoxin-MazE	PF04014.13	gi|55376639|ref|YP_134490.1|	-	4.9e-10	38.9	0.4	9.8e-10	37.9	0.0	1.7	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
PhoU	PF01895.14	gi|55376639|ref|YP_134490.1|	-	4.3e-09	36.6	0.6	3.4e-06	27.3	0.0	2.6	2	0	0	2	2	2	2	PhoU	domain
Arginase	PF00491.16	gi|55376640|ref|YP_134491.1|	-	3.3e-72	243.1	0.2	4.1e-72	242.7	0.2	1.0	1	0	0	1	1	1	1	Arginase	family
Methyltransf_11	PF08241.7	gi|55376641|ref|YP_134492.1|	-	8.3e-09	35.8	0.0	1.6e-08	34.8	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376641|ref|YP_134492.1|	-	7.6e-05	22.4	0.0	9.5e-05	22.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|55376641|ref|YP_134492.1|	-	0.0015	18.9	0.0	0.0025	18.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|55376641|ref|YP_134492.1|	-	0.012	15.0	0.0	0.014	14.7	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_31	PF13847.1	gi|55376641|ref|YP_134492.1|	-	0.012	15.2	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376641|ref|YP_134492.1|	-	0.024	14.9	0.1	0.055	13.8	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|55376641|ref|YP_134492.1|	-	0.026	15.1	0.1	0.043	14.3	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|55376641|ref|YP_134492.1|	-	0.038	12.3	0.0	0.047	12.0	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DUF429	PF04250.8	gi|55376641|ref|YP_134492.1|	-	0.069	12.4	0.2	0.16	11.2	0.1	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF429)
Gly-zipper_OmpA	PF13436.1	gi|55376642|ref|YP_134493.1|	-	0.0029	17.2	5.5	0.0047	16.5	3.8	1.4	1	0	0	1	1	1	1	Glycine-zipper	containing	OmpA-like	membrane	domain
TraT	PF05818.7	gi|55376642|ref|YP_134493.1|	-	0.0046	16.4	0.4	0.0046	16.4	0.3	1.1	1	0	0	1	1	1	1	Enterobacterial	TraT	complement	resistance	protein
Glug	PF07581.7	gi|55376642|ref|YP_134493.1|	-	0.31	11.3	10.5	2.4	8.5	1.6	2.7	2	0	0	2	2	2	0	The	GLUG	motif
DUF2076	PF09849.4	gi|55376642|ref|YP_134493.1|	-	1.4	8.8	11.5	1.6	8.7	7.9	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2076)
Gly-zipper_YMGG	PF13441.1	gi|55376642|ref|YP_134493.1|	-	1.5	8.4	14.6	6	6.4	10.1	1.9	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
Gly-zipper_Omp	PF13488.1	gi|55376642|ref|YP_134493.1|	-	4.3	7.0	17.2	8.2	6.1	10.8	2.2	1	1	1	2	2	2	0	Glycine	zipper
TRAP_alpha	PF03896.11	gi|55376642|ref|YP_134493.1|	-	5.9	5.8	7.1	7.3	5.4	4.9	1.2	1	0	0	1	1	1	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Rick_17kDa_Anti	PF05433.10	gi|55376642|ref|YP_134493.1|	-	7.5	6.3	16.6	1.1e+02	2.6	11.5	2.3	1	1	0	1	1	1	0	Glycine	zipper	2TM	domain
adh_short	PF00106.20	gi|55376643|ref|YP_134494.1|	-	7.6e-18	64.9	7.0	1.7e-17	63.8	4.9	1.6	1	1	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|55376643|ref|YP_134494.1|	-	8.4e-09	35.3	1.4	1.4e-08	34.6	1.0	1.4	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|55376643|ref|YP_134494.1|	-	0.00016	21.1	0.0	0.00021	20.8	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ADH_zinc_N	PF00107.21	gi|55376643|ref|YP_134494.1|	-	0.00025	20.5	0.7	0.17	11.4	0.4	2.7	2	1	0	2	2	2	2	Zinc-binding	dehydrogenase
adh_short	PF00106.20	gi|55376644|ref|YP_134495.1|	-	3e-17	63.0	0.3	4.3e-17	62.5	0.2	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|55376644|ref|YP_134495.1|	-	6.7e-17	62.0	0.0	1.6e-15	57.5	0.0	2.0	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|55376644|ref|YP_134495.1|	-	4.6e-06	26.4	0.0	6.7e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|55376644|ref|YP_134495.1|	-	0.11	11.8	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
GSDH	PF07995.6	gi|55376645|ref|YP_134496.1|	-	1.7e-109	365.9	0.0	2e-109	365.7	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
TAT_signal	PF10518.4	gi|55376645|ref|YP_134496.1|	-	0.02	14.8	1.9	0.046	13.7	1.3	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RNase_H	PF00075.19	gi|55376649|ref|YP_134500.1|	-	3.9e-11	43.4	0.0	5.6e-11	42.9	0.0	1.3	1	0	0	1	1	1	1	RNase	H
RVT_3	PF13456.1	gi|55376649|ref|YP_134500.1|	-	2.7e-06	27.0	0.0	4.1e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	Reverse	transcriptase-like
Pyr_redox_2	PF07992.9	gi|55376650|ref|YP_134501.1|	-	1.8e-21	76.9	0.0	2.9e-21	76.2	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|55376650|ref|YP_134501.1|	-	1.9e-08	34.6	0.1	0.00077	19.5	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|55376650|ref|YP_134501.1|	-	4.9e-08	32.2	3.6	0.0003	19.8	0.7	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|55376650|ref|YP_134501.1|	-	8.8e-06	25.0	1.0	5.6e-05	22.4	0.3	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|55376650|ref|YP_134501.1|	-	9.7e-06	24.6	3.7	0.00022	20.2	0.5	2.7	2	1	1	3	3	3	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|55376650|ref|YP_134501.1|	-	5.2e-05	22.4	0.6	8.3e-05	21.7	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|55376650|ref|YP_134501.1|	-	0.00013	20.6	0.2	0.0078	14.7	0.4	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.22	gi|55376650|ref|YP_134501.1|	-	0.00018	21.8	0.1	0.059	13.7	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|55376650|ref|YP_134501.1|	-	0.00059	19.0	0.1	0.0011	18.1	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
GIDA	PF01134.17	gi|55376650|ref|YP_134501.1|	-	0.0007	18.5	1.3	0.0011	17.8	0.5	1.6	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
K_oxygenase	PF13434.1	gi|55376650|ref|YP_134501.1|	-	0.0013	17.7	0.0	0.0061	15.5	0.0	1.8	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.1	gi|55376650|ref|YP_134501.1|	-	0.0064	16.4	0.3	0.015	15.3	0.2	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|55376650|ref|YP_134501.1|	-	0.0093	15.7	1.5	0.21	11.3	0.0	2.4	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|55376650|ref|YP_134501.1|	-	0.12	11.2	0.2	0.31	9.9	0.2	1.6	1	1	1	2	2	2	0	Lycopene	cyclase	protein
NmrA	PF05368.8	gi|55376650|ref|YP_134501.1|	-	0.16	11.1	0.0	0.25	10.5	0.0	1.2	1	0	0	1	1	1	0	NmrA-like	family
PIN_2	PF10130.4	gi|55376651|ref|YP_134502.1|	-	0.012	15.6	0.3	0.016	15.2	0.2	1.4	1	1	0	1	1	1	0	PIN	domain
P16-Arc	PF04699.9	gi|55376651|ref|YP_134502.1|	-	0.068	13.1	0.1	0.087	12.8	0.0	1.2	1	0	0	1	1	1	0	ARP2/3	complex	16	kDa	subunit	(p16-Arc)
Sulfatase	PF00884.18	gi|55376652|ref|YP_134503.1|	-	3.5e-32	111.8	0.0	5e-32	111.3	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|55376652|ref|YP_134503.1|	-	1.5e-09	37.7	1.9	0.00021	20.7	0.1	2.3	1	1	1	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|55376652|ref|YP_134503.1|	-	0.00094	17.7	0.0	0.0013	17.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.7	gi|55376652|ref|YP_134503.1|	-	0.0049	15.7	0.0	0.0082	15.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
Phosphoesterase	PF04185.9	gi|55376652|ref|YP_134503.1|	-	0.016	14.4	0.1	1	8.4	0.0	2.2	2	0	0	2	2	2	0	Phosphoesterase	family
Alk_phosphatase	PF00245.15	gi|55376652|ref|YP_134503.1|	-	0.033	12.8	0.0	0.15	10.7	0.0	2.0	2	0	0	2	2	2	0	Alkaline	phosphatase
Usp	PF00582.21	gi|55376653|ref|YP_134504.1|	-	4.9e-27	94.8	0.5	5.5e-27	94.6	0.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
RC-P840_PscD	PF10657.4	gi|55376653|ref|YP_134504.1|	-	0.017	14.9	0.1	0.026	14.3	0.0	1.3	1	0	0	1	1	1	0	Photosystem	P840	reaction	centre	protein	PscD
Pyr_redox	PF00070.22	gi|55376653|ref|YP_134504.1|	-	0.039	14.3	0.2	0.25	11.7	0.0	2.2	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
MCPsignal	PF00015.16	gi|55376654|ref|YP_134505.1|	-	7.6e-44	149.7	69.7	3.9e-42	144.1	24.6	3.7	1	1	1	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.20	gi|55376654|ref|YP_134505.1|	-	6.9e-06	26.1	0.3	6.9e-06	26.1	0.2	4.2	4	1	1	5	5	5	1	HAMP	domain
DUF2570	PF10828.3	gi|55376654|ref|YP_134505.1|	-	0.0081	15.7	4.4	0.0081	15.7	3.1	3.9	3	2	1	4	4	4	1	Protein	of	unknown	function	(DUF2570)
DUF948	PF06103.6	gi|55376654|ref|YP_134505.1|	-	0.41	10.5	35.6	2.2	8.2	1.0	6.1	3	3	2	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
Cauli_AT	PF03233.8	gi|55376654|ref|YP_134505.1|	-	0.59	9.8	18.4	10	5.8	2.4	4.4	4	1	0	4	4	4	0	Aphid	transmission	protein
IFT57	PF10498.4	gi|55376654|ref|YP_134505.1|	-	3.8	6.1	30.4	0.12	11.1	8.7	3.3	2	1	1	3	3	3	0	Intra-flagellar	transport	protein	57
IncA	PF04156.9	gi|55376654|ref|YP_134505.1|	-	4.1	6.9	37.5	3	7.3	9.9	4.1	2	2	0	3	3	3	0	IncA	protein
Laminin_II	PF06009.7	gi|55376654|ref|YP_134505.1|	-	5.2	6.8	48.0	0.14	11.9	1.3	6.0	3	3	2	6	6	6	0	Laminin	Domain	II
COG2	PF06148.6	gi|55376654|ref|YP_134505.1|	-	8.3	6.2	37.4	16	5.3	0.9	5.8	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
NPV_P10	PF05531.7	gi|55376654|ref|YP_134505.1|	-	9.6	6.5	34.8	9.2	6.6	1.7	6.6	3	2	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
HMA	PF00403.21	gi|55376655|ref|YP_134506.1|	-	5e-19	68.1	0.5	5.5e-19	68.0	0.3	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
BOFC_N	PF08977.5	gi|55376655|ref|YP_134506.1|	-	0.033	14.0	0.5	0.088	12.6	0.0	1.7	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
MTH865	PF07747.6	gi|55376656|ref|YP_134507.1|	-	3.6e-16	58.5	0.0	3.9e-16	58.4	0.0	1.0	1	0	0	1	1	1	1	MTH865-like	family
ANTH	PF07651.11	gi|55376657|ref|YP_134508.1|	-	0.099	11.3	0.1	0.11	11.2	0.1	1.0	1	0	0	1	1	1	0	ANTH	domain
DUF2795	PF11387.3	gi|55376657|ref|YP_134508.1|	-	0.13	12.1	0.3	0.25	11.2	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2795)
PQQ_2	PF13360.1	gi|55376658|ref|YP_134509.1|	-	2.2e-37	128.8	26.6	1.1e-16	61.0	3.5	3.5	1	1	3	4	4	4	4	PQQ-like	domain
PQQ_3	PF13570.1	gi|55376658|ref|YP_134509.1|	-	1.6e-13	50.4	40.4	0.00085	19.5	1.1	7.5	8	1	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.16	gi|55376658|ref|YP_134509.1|	-	1.3e-05	24.4	11.7	3.4	7.3	0.0	7.0	7	0	0	7	7	7	2	PQQ	enzyme	repeat
CytB6-F_Fe-S	PF08802.5	gi|55376658|ref|YP_134509.1|	-	0.026	14.4	0.1	0.11	12.5	0.1	2.1	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	Fe-S	subunit
Tetraspannin	PF00335.15	gi|55376659|ref|YP_134510.1|	-	6.5	5.9	6.5	13	4.9	4.5	1.6	1	1	0	1	1	1	0	Tetraspanin	family
DUF393	PF04134.7	gi|55376661|ref|YP_134512.1|	-	1e-06	29.8	0.0	1.5e-06	29.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
Thioredoxin_2	PF13098.1	gi|55376661|ref|YP_134512.1|	-	0.15	12.3	0.0	0.21	11.8	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
MarR_2	PF12802.2	gi|55376662|ref|YP_134513.1|	-	0.005	16.4	0.0	0.0061	16.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.15	gi|55376662|ref|YP_134513.1|	-	0.0083	16.2	0.0	0.01	15.9	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|55376662|ref|YP_134513.1|	-	0.019	14.8	0.0	0.023	14.6	0.0	1.1	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.5	gi|55376662|ref|YP_134513.1|	-	0.061	12.9	0.4	0.17	11.4	0.0	1.8	1	1	1	2	2	2	0	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|55376662|ref|YP_134513.1|	-	0.08	12.6	0.0	0.11	12.2	0.0	1.3	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Pyridox_ox_2	PF12900.2	gi|55376663|ref|YP_134514.1|	-	1.8e-16	60.2	0.0	2e-16	60.1	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|55376663|ref|YP_134514.1|	-	0.0026	17.7	0.0	0.0068	16.3	0.0	1.7	2	0	0	2	2	2	1	Pyridoxamine	5'-phosphate	oxidase
Creatininase	PF02633.9	gi|55376664|ref|YP_134515.1|	-	4e-66	222.5	1.0	4.5e-66	222.3	0.7	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF457	PF04307.9	gi|55376665|ref|YP_134516.1|	-	0.031	13.6	14.5	0.051	12.9	10.0	1.3	1	0	0	1	1	1	0	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
CDP-OH_P_transf	PF01066.16	gi|55376666|ref|YP_134517.1|	-	2.2e-11	43.9	3.8	2.2e-11	43.9	2.7	1.8	3	0	0	3	3	3	1	CDP-alcohol	phosphatidyltransferase
Aldo_ket_red	PF00248.16	gi|55376668|ref|YP_134519.1|	-	3.1e-46	157.4	0.0	4.8e-46	156.8	0.0	1.3	1	0	0	1	1	1	1	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.17	gi|55376668|ref|YP_134519.1|	-	2.2e-16	60.4	0.4	3.1e-15	56.7	0.2	2.7	3	0	0	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.11	gi|55376668|ref|YP_134519.1|	-	5.4e-07	30.0	1.2	1.6e-06	28.5	0.8	1.8	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA_C	PF02894.12	gi|55376668|ref|YP_134519.1|	-	0.0004	20.1	0.0	0.00086	19.0	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Saccharop_dh	PF03435.13	gi|55376668|ref|YP_134519.1|	-	0.057	12.3	0.5	0.25	10.2	0.3	2.0	2	0	0	2	2	2	0	Saccharopine	dehydrogenase
Sulfatase	PF00884.18	gi|55376669|ref|YP_134520.1|	-	0.0022	17.2	0.0	0.0034	16.6	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
ADH_zinc_N	PF00107.21	gi|55376670|ref|YP_134521.1|	-	8.8e-06	25.2	0.0	3.7e-05	23.2	0.0	2.0	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.7	gi|55376670|ref|YP_134521.1|	-	0.011	15.4	0.0	0.02	14.6	0.0	1.4	1	0	0	1	1	1	0	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.1	gi|55376670|ref|YP_134521.1|	-	0.025	15.4	0.3	0.053	14.4	0.0	1.6	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
PTPS	PF01242.14	gi|55376671|ref|YP_134522.1|	-	6.3e-09	35.5	0.2	6.6e-09	35.4	0.1	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Glycos_transf_1	PF00534.15	gi|55376672|ref|YP_134523.1|	-	2.1e-34	118.3	0.0	3.1e-34	117.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|55376672|ref|YP_134523.1|	-	1e-18	67.8	0.1	1.9e-18	66.8	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|55376672|ref|YP_134523.1|	-	1.6e-10	41.1	0.1	3.6e-10	39.9	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|55376672|ref|YP_134523.1|	-	9e-09	35.6	3.1	9e-09	35.6	2.2	2.5	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|55376672|ref|YP_134523.1|	-	2.8e-06	27.1	0.0	6.7e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Phage_T7_Capsid	PF05396.6	gi|55376672|ref|YP_134523.1|	-	0.075	13.1	0.0	0.15	12.2	0.0	1.4	1	0	0	1	1	1	0	Phage	T7	capsid	assembly	protein
Methyltransf_18	PF12847.2	gi|55376673|ref|YP_134524.1|	-	9.9e-07	29.3	0.0	2e-06	28.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376673|ref|YP_134524.1|	-	2.8e-05	24.3	0.0	9.2e-05	22.7	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376673|ref|YP_134524.1|	-	0.00012	21.8	0.0	0.00017	21.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|55376673|ref|YP_134524.1|	-	0.00059	19.8	1.3	0.0029	17.6	0.1	2.2	1	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|55376673|ref|YP_134524.1|	-	0.0018	18.7	0.0	0.012	16.0	0.0	2.4	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|55376673|ref|YP_134524.1|	-	0.075	12.6	0.0	0.18	11.3	0.0	1.6	2	0	0	2	2	2	0	Methyltransferase	domain
MaoC_dehydratas	PF01575.14	gi|55376674|ref|YP_134525.1|	-	1.5e-16	59.8	0.0	1.9e-16	59.5	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|55376674|ref|YP_134525.1|	-	7.2e-08	32.2	0.0	1.9e-07	30.9	0.0	1.6	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
FUR	PF01475.14	gi|55376675|ref|YP_134526.1|	-	0.053	13.4	0.0	0.053	13.4	0.0	1.0	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Ribosomal_L36	PF00444.13	gi|55376675|ref|YP_134526.1|	-	0.087	12.8	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L36
Laps	PF10169.4	gi|55376675|ref|YP_134526.1|	-	0.11	12.6	0.1	0.12	12.5	0.0	1.0	1	0	0	1	1	1	0	Learning-associated	protein
TOMM6	PF15184.1	gi|55376677|ref|YP_134528.1|	-	0.0073	15.6	0.0	0.017	14.4	0.0	1.5	1	0	0	1	1	1	1	Mitochondrial	import	receptor	subunit	TOM6	homolog
MreB_Mbl	PF06723.8	gi|55376678|ref|YP_134529.1|	-	2.8e-06	26.1	0.0	0.0092	14.6	0.0	2.2	2	0	0	2	2	2	2	MreB/Mbl	protein
DUF2387	PF09526.5	gi|55376679|ref|YP_134530.1|	-	0.013	15.4	1.0	0.017	15.0	0.1	1.7	2	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.7	gi|55376679|ref|YP_134530.1|	-	0.016	14.5	0.9	0.045	13.0	0.6	1.8	1	0	0	1	1	1	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|55376679|ref|YP_134530.1|	-	0.048	13.4	0.5	0.097	12.4	0.4	1.5	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|55376679|ref|YP_134530.1|	-	0.057	12.6	1.3	0.11	11.7	0.9	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
Lar_restr_allev	PF14354.1	gi|55376679|ref|YP_134530.1|	-	0.083	13.2	0.3	0.21	11.9	0.2	1.8	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DZR	PF12773.2	gi|55376679|ref|YP_134530.1|	-	0.13	12.0	0.6	0.25	11.1	0.4	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
DUF1657	PF07870.6	gi|55376679|ref|YP_134530.1|	-	0.82	9.3	0.1	0.82	9.3	0.1	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1657)
zinc_ribbon_2	PF13240.1	gi|55376681|ref|YP_134532.1|	-	0.016	14.6	5.3	0.04	13.4	1.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Utp14	PF04615.8	gi|55376681|ref|YP_134532.1|	-	0.052	11.7	5.5	0.057	11.5	3.8	1.0	1	0	0	1	1	1	0	Utp14	protein
HypA	PF01155.14	gi|55376681|ref|YP_134532.1|	-	0.094	12.4	1.2	0.69	9.6	0.1	2.1	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
DUF1660	PF07874.6	gi|55376681|ref|YP_134532.1|	-	0.19	12.0	4.5	1.1	9.6	0.6	3.1	2	1	0	2	2	2	0	Prophage	protein	(DUF1660)
DUF2367	PF10164.4	gi|55376681|ref|YP_134532.1|	-	0.26	11.1	1.0	0.46	10.3	0.1	1.9	2	0	0	2	2	1	0	Uncharacterized	conserved	protein	(DUF2367)
zf-RING_3	PF14369.1	gi|55376681|ref|YP_134532.1|	-	0.56	10.2	7.3	1.1	9.2	0.1	3.2	3	0	0	3	3	3	0	zinc-finger
DZR	PF12773.2	gi|55376681|ref|YP_134532.1|	-	0.74	9.6	4.4	12	5.8	1.4	2.7	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|55376681|ref|YP_134532.1|	-	1.1	8.6	5.2	33	3.8	2.7	2.8	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|55376681|ref|YP_134532.1|	-	3.4	7.4	7.7	39	4.0	0.1	3.5	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
zf-TFIIB	PF13453.1	gi|55376681|ref|YP_134532.1|	-	4.4	6.5	8.7	0.23	10.6	1.0	2.3	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
Zn-ribbon_8	PF09723.5	gi|55376681|ref|YP_134532.1|	-	6.6	6.7	9.2	8.6	6.3	2.7	2.7	2	1	0	2	2	2	0	Zinc	ribbon	domain
DUF2387	PF09526.5	gi|55376681|ref|YP_134532.1|	-	6.7	6.7	11.3	11	6.0	0.7	3.8	2	2	1	3	3	3	0	Probable	metal-binding	protein	(DUF2387)
RRN7	PF11781.3	gi|55376681|ref|YP_134532.1|	-	8.7	5.9	11.2	2.4	7.7	0.0	3.0	3	0	0	3	3	3	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
HhH-GPD	PF00730.20	gi|55376682|ref|YP_134533.1|	-	1.2e-16	60.9	0.0	2.1e-16	60.1	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.1	gi|55376682|ref|YP_134533.1|	-	6.3e-05	23.0	0.6	0.35	11.0	0.0	2.4	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|55376682|ref|YP_134533.1|	-	9.3e-05	21.9	0.0	0.00059	19.4	0.0	2.3	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_2	PF12826.2	gi|55376682|ref|YP_134533.1|	-	0.02	14.7	0.1	3.9	7.4	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HHH_8	PF14716.1	gi|55376682|ref|YP_134533.1|	-	0.12	12.5	0.1	0.81	9.9	0.1	2.3	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
SNF	PF00209.13	gi|55376683|ref|YP_134534.1|	-	2.7e-47	161.4	31.7	5.8e-27	94.3	11.0	2.1	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
ABC_tran	PF00005.22	gi|55376684|ref|YP_134535.1|	-	8.1e-35	120.0	0.0	1.3e-34	119.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376684|ref|YP_134535.1|	-	1.8e-08	34.7	0.0	0.0028	17.6	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|55376684|ref|YP_134535.1|	-	1.1e-05	25.4	0.0	1.6e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|55376684|ref|YP_134535.1|	-	0.0022	17.4	0.0	0.0043	16.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.17	gi|55376684|ref|YP_134535.1|	-	0.0028	16.5	0.0	0.0046	15.8	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DUF258	PF03193.11	gi|55376684|ref|YP_134535.1|	-	0.0051	16.0	0.0	0.0085	15.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|55376684|ref|YP_134535.1|	-	0.0054	17.2	0.1	0.012	16.1	0.0	1.5	1	0	0	1	1	1	1	Miro-like	protein
NTPase_1	PF03266.10	gi|55376684|ref|YP_134535.1|	-	0.0077	15.9	0.3	0.022	14.5	0.0	2.0	2	1	1	3	3	3	1	NTPase
AAA_22	PF13401.1	gi|55376684|ref|YP_134535.1|	-	0.015	15.4	0.3	0.04	14.0	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|55376684|ref|YP_134535.1|	-	0.017	14.7	0.4	0.033	13.8	0.3	1.4	1	0	0	1	1	1	0	NACHT	domain
Mg_chelatase	PF01078.16	gi|55376684|ref|YP_134535.1|	-	0.02	14.0	0.2	2.2	7.3	0.1	2.1	1	1	1	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Arch_ATPase	PF01637.13	gi|55376684|ref|YP_134535.1|	-	0.027	14.1	0.0	0.033	13.8	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
MobB	PF03205.9	gi|55376684|ref|YP_134535.1|	-	0.029	14.0	0.1	0.047	13.3	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.1	gi|55376684|ref|YP_134535.1|	-	0.032	13.8	0.3	0.053	13.1	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|55376684|ref|YP_134535.1|	-	0.042	14.1	0.0	0.047	14.0	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|55376684|ref|YP_134535.1|	-	0.066	12.1	0.0	0.1	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.1	gi|55376684|ref|YP_134535.1|	-	0.093	12.3	0.1	0.29	10.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|55376684|ref|YP_134535.1|	-	0.097	12.8	0.3	0.15	12.2	0.2	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.1	gi|55376684|ref|YP_134535.1|	-	0.13	12.1	0.0	0.27	11.1	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
SMC_N	PF02463.14	gi|55376684|ref|YP_134535.1|	-	0.17	11.0	0.5	0.89	8.7	0.3	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.1	gi|55376684|ref|YP_134535.1|	-	0.17	11.7	0.7	1.3	9.0	0.5	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_tran	PF00005.22	gi|55376685|ref|YP_134536.1|	-	2.1e-31	109.0	0.0	3e-31	108.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376685|ref|YP_134536.1|	-	1.1e-09	38.6	0.4	9.2e-07	29.1	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|55376685|ref|YP_134536.1|	-	1.3e-07	31.1	0.2	0.0011	18.1	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|55376685|ref|YP_134536.1|	-	1.4e-05	25.4	0.1	2.7e-05	24.6	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|55376685|ref|YP_134536.1|	-	0.00018	20.7	0.0	0.00028	20.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|55376685|ref|YP_134536.1|	-	0.00034	20.0	0.1	0.00065	19.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|55376685|ref|YP_134536.1|	-	0.0048	17.0	0.2	0.022	14.8	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|55376685|ref|YP_134536.1|	-	0.0048	16.5	0.2	0.012	15.2	0.1	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_16	PF13191.1	gi|55376685|ref|YP_134536.1|	-	0.0076	16.2	2.6	0.05	13.5	1.8	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|55376685|ref|YP_134536.1|	-	0.0089	15.6	0.0	0.018	14.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|55376685|ref|YP_134536.1|	-	0.014	14.8	0.1	0.031	13.7	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
MMR_HSR1	PF01926.18	gi|55376685|ref|YP_134536.1|	-	0.019	14.8	0.0	0.041	13.8	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.1	gi|55376685|ref|YP_134536.1|	-	0.022	14.1	0.0	0.62	9.4	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|55376685|ref|YP_134536.1|	-	0.028	14.3	0.0	0.055	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|55376685|ref|YP_134536.1|	-	0.041	14.7	1.0	0.19	12.5	0.6	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|55376685|ref|YP_134536.1|	-	0.041	13.8	1.4	2.4	8.0	0.0	2.6	2	1	1	3	3	3	0	AAA	domain
GTP_EFTU	PF00009.22	gi|55376685|ref|YP_134536.1|	-	0.043	13.2	0.0	0.064	12.6	0.0	1.2	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_15	PF13175.1	gi|55376685|ref|YP_134536.1|	-	0.051	12.6	0.0	0.5	9.3	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
ATP-synt_ab	PF00006.20	gi|55376685|ref|YP_134536.1|	-	0.11	11.9	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_13	PF13166.1	gi|55376685|ref|YP_134536.1|	-	0.17	10.2	0.0	0.67	8.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
BPD_transp_2	PF02653.11	gi|55376686|ref|YP_134537.1|	-	2e-34	118.7	40.1	5.4e-34	117.3	27.8	1.6	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|55376687|ref|YP_134538.1|	-	3.9e-33	114.5	40.2	6.7e-33	113.7	27.9	1.4	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.1	gi|55376688|ref|YP_134539.1|	-	9.4e-76	255.3	1.2	1.1e-75	255.1	0.8	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|55376688|ref|YP_134539.1|	-	1.6e-69	234.3	0.1	2e-69	234.0	0.1	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.4	gi|55376688|ref|YP_134539.1|	-	0.013	15.4	3.8	0.03	14.2	2.6	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Urease_beta	PF00699.15	gi|55376689|ref|YP_134540.1|	-	5e-45	151.4	0.3	6.2e-45	151.1	0.2	1.1	1	0	0	1	1	1	1	Urease	beta	subunit
Amidohydro_1	PF01979.15	gi|55376690|ref|YP_134541.1|	-	1.8e-53	182.3	2.5	2.7e-53	181.7	1.7	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|55376690|ref|YP_134541.1|	-	3.6e-49	165.9	1.5	7.9e-49	164.8	1.0	1.6	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_4	PF13147.1	gi|55376690|ref|YP_134541.1|	-	1.7e-06	28.2	0.4	0.0023	18.0	0.4	2.6	2	1	0	2	2	2	2	Amidohydrolase
Amidohydro_5	PF13594.1	gi|55376690|ref|YP_134541.1|	-	3.5e-06	26.7	3.0	1.1e-05	25.1	2.1	1.9	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|55376690|ref|YP_134541.1|	-	3.6e-05	23.1	2.4	0.00027	20.2	0.4	2.9	3	1	0	3	3	3	1	Amidohydrolase	family
Urease_gamma	PF00547.13	gi|55376691|ref|YP_134542.1|	-	4.9e-43	145.1	0.0	5.8e-43	144.9	0.0	1.1	1	0	0	1	1	1	1	Urease,	gamma	subunit
KCl_Cotrans_1	PF03522.10	gi|55376691|ref|YP_134542.1|	-	0.24	10.9	1.6	0.51	9.8	1.1	1.6	1	0	0	1	1	1	0	K-Cl	Co-transporter	type	1	(KCC1)
cobW	PF02492.14	gi|55376692|ref|YP_134543.1|	-	1.9e-34	118.6	0.0	2.2e-34	118.4	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|55376692|ref|YP_134543.1|	-	4.4e-08	32.2	1.6	3e-07	29.5	1.1	1.9	1	1	0	1	1	1	1	ArgK	protein
MobB	PF03205.9	gi|55376692|ref|YP_134543.1|	-	7.7e-06	25.6	0.0	1.3e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ABC_tran	PF00005.22	gi|55376692|ref|YP_134543.1|	-	0.0017	18.6	0.0	0.0025	18.0	0.0	1.4	2	0	0	2	2	2	1	ABC	transporter
AAA_18	PF13238.1	gi|55376692|ref|YP_134543.1|	-	0.0033	17.7	0.1	0.0049	17.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|55376692|ref|YP_134543.1|	-	0.013	15.4	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.1	gi|55376692|ref|YP_134543.1|	-	0.015	14.8	0.0	0.019	14.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|55376692|ref|YP_134543.1|	-	0.018	15.8	0.1	0.034	14.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
LpxK	PF02606.9	gi|55376692|ref|YP_134543.1|	-	0.018	13.9	0.1	0.032	13.1	0.1	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
KAP_NTPase	PF07693.9	gi|55376692|ref|YP_134543.1|	-	0.033	13.1	0.0	0.033	13.1	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
NTPase_1	PF03266.10	gi|55376692|ref|YP_134543.1|	-	0.035	13.8	0.0	0.055	13.1	0.0	1.3	1	0	0	1	1	1	0	NTPase
LysR_substrate	PF03466.15	gi|55376692|ref|YP_134543.1|	-	0.04	13.0	0.4	6.2	5.8	0.1	2.3	2	0	0	2	2	2	0	LysR	substrate	binding	domain
GTP_EFTU	PF00009.22	gi|55376692|ref|YP_134543.1|	-	0.06	12.7	0.0	3.6	6.9	0.0	2.3	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_19	PF13245.1	gi|55376692|ref|YP_134543.1|	-	0.073	12.8	0.2	0.14	11.9	0.2	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
NACHT	PF05729.7	gi|55376692|ref|YP_134543.1|	-	0.093	12.3	0.1	0.15	11.7	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_10	PF12846.2	gi|55376692|ref|YP_134543.1|	-	0.11	11.8	0.0	0.15	11.4	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
SRP54	PF00448.17	gi|55376692|ref|YP_134543.1|	-	0.12	11.8	0.0	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.7	gi|55376692|ref|YP_134543.1|	-	0.17	10.9	0.0	0.26	10.3	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_23	PF13476.1	gi|55376692|ref|YP_134543.1|	-	0.23	11.7	0.4	0.35	11.1	0.3	1.2	1	0	0	1	1	1	0	AAA	domain
UreD	PF01774.12	gi|55376693|ref|YP_134544.1|	-	1.3e-51	175.0	0.3	1.7e-51	174.7	0.2	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
UreE_N	PF02814.10	gi|55376694|ref|YP_134545.1|	-	3.3e-14	52.1	1.0	3.3e-14	52.1	0.7	1.7	2	0	0	2	2	2	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.7	gi|55376694|ref|YP_134545.1|	-	0.00019	21.4	7.8	0.00055	19.9	5.4	1.8	1	1	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
SAF	PF08666.7	gi|55376694|ref|YP_134545.1|	-	0.093	13.1	0.1	0.29	11.5	0.1	1.8	2	0	0	2	2	2	0	SAF	domain
UreF	PF01730.11	gi|55376695|ref|YP_134546.1|	-	3.6e-34	117.9	3.3	4.8e-34	117.5	2.3	1.1	1	0	0	1	1	1	1	UreF
Methyltransf_11	PF08241.7	gi|55376696|ref|YP_134547.1|	-	7.1e-19	68.1	0.0	1.2e-18	67.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376696|ref|YP_134547.1|	-	7.6e-11	42.2	0.0	2.1e-10	40.8	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|55376696|ref|YP_134547.1|	-	6.5e-10	38.7	0.0	2.3e-09	37.0	0.0	1.6	1	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376696|ref|YP_134547.1|	-	1.9e-09	37.4	0.0	3.8e-09	36.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|55376696|ref|YP_134547.1|	-	1.3e-07	30.9	0.0	1.7e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.2	gi|55376696|ref|YP_134547.1|	-	1.8e-07	31.7	0.0	2.9e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|55376696|ref|YP_134547.1|	-	9.3e-07	28.8	0.2	1.8e-06	27.9	0.1	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|55376696|ref|YP_134547.1|	-	4e-06	27.2	0.0	7.2e-06	26.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.7	gi|55376696|ref|YP_134547.1|	-	7.1e-06	25.0	0.0	8.3e-06	24.8	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
FtsJ	PF01728.14	gi|55376696|ref|YP_134547.1|	-	4.9e-05	23.3	0.0	0.00012	22.1	0.0	1.6	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_8	PF05148.10	gi|55376696|ref|YP_134547.1|	-	0.0018	17.9	0.0	0.0034	17.0	0.0	1.6	1	1	0	1	1	1	1	Hypothetical	methyltransferase
RrnaAD	PF00398.15	gi|55376696|ref|YP_134547.1|	-	0.0043	16.1	0.0	0.0052	15.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_24	PF13578.1	gi|55376696|ref|YP_134547.1|	-	0.011	16.5	0.3	0.019	15.7	0.2	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|55376696|ref|YP_134547.1|	-	0.065	11.5	0.0	0.14	10.5	0.0	1.5	1	1	1	2	2	2	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.9	gi|55376696|ref|YP_134547.1|	-	0.1	11.9	0.0	0.17	11.2	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	small	domain
DUF302	PF03625.9	gi|55376697|ref|YP_134548.1|	-	1.4e-17	63.0	0.0	2e-17	62.4	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
MgtE	PF01769.11	gi|55376698|ref|YP_134549.1|	-	0.068	13.4	0.0	5.6	7.2	0.0	2.3	1	1	1	2	2	2	0	Divalent	cation	transporter
TrmB	PF01978.14	gi|55376699|ref|YP_134550.1|	-	6.3e-17	61.0	0.0	8.9e-17	60.5	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|55376699|ref|YP_134550.1|	-	1.3e-07	31.1	0.0	2.5e-07	30.1	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|55376699|ref|YP_134550.1|	-	1.4e-06	27.8	0.0	3e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|55376699|ref|YP_134550.1|	-	1.1e-05	24.9	0.0	1.9e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.11	gi|55376699|ref|YP_134550.1|	-	6.9e-05	22.9	0.0	0.0001	22.3	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.2	gi|55376699|ref|YP_134550.1|	-	8.3e-05	22.1	0.0	0.00023	20.7	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|55376699|ref|YP_134550.1|	-	0.00017	21.2	0.1	0.00038	20.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.8	gi|55376699|ref|YP_134550.1|	-	0.0014	18.2	0.0	0.0025	17.4	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_24	PF13412.1	gi|55376699|ref|YP_134550.1|	-	0.0028	16.9	0.0	0.0049	16.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|55376699|ref|YP_134550.1|	-	0.011	15.9	0.0	0.021	15.1	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|55376699|ref|YP_134550.1|	-	0.012	15.4	0.0	0.027	14.2	0.0	1.7	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
UMPH-1	PF05822.7	gi|55376699|ref|YP_134550.1|	-	0.021	14.1	0.2	0.034	13.4	0.1	1.3	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_23	PF13384.1	gi|55376699|ref|YP_134550.1|	-	0.022	14.4	0.0	0.047	13.3	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
GntR	PF00392.16	gi|55376699|ref|YP_134550.1|	-	0.022	14.1	0.2	0.047	13.1	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Sigma54_DBD	PF04552.8	gi|55376699|ref|YP_134550.1|	-	0.03	13.8	0.0	0.044	13.2	0.0	1.2	1	0	0	1	1	1	0	Sigma-54,	DNA	binding	domain
HTH_38	PF13936.1	gi|55376699|ref|YP_134550.1|	-	0.035	13.6	0.0	0.092	12.3	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF387	PF04079.11	gi|55376699|ref|YP_134550.1|	-	0.046	13.0	0.3	1.6	8.1	0.0	2.4	1	1	1	2	2	2	0	Putative	transcriptional	regulators	(Ypuh-like)
HTH_29	PF13551.1	gi|55376699|ref|YP_134550.1|	-	0.055	13.6	0.0	0.07	13.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
Dimerisation	PF08100.6	gi|55376699|ref|YP_134550.1|	-	0.14	12.0	0.0	0.38	10.6	0.0	1.7	2	0	0	2	2	2	0	Dimerisation	domain
Thioredoxin	PF00085.15	gi|55376700|ref|YP_134551.1|	-	2.5e-27	94.5	0.0	3e-27	94.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|55376700|ref|YP_134551.1|	-	5.4e-10	39.4	0.1	4.6e-09	36.4	0.1	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.15	gi|55376700|ref|YP_134551.1|	-	2.5e-06	27.2	0.7	4e-06	26.5	0.2	1.5	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.1	gi|55376700|ref|YP_134551.1|	-	1.2e-05	25.2	0.0	0.026	14.6	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.1	gi|55376700|ref|YP_134551.1|	-	2.8e-05	24.0	0.0	4.1e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_3	PF13192.1	gi|55376700|ref|YP_134551.1|	-	4.7e-05	23.1	0.0	7.2e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.1	gi|55376700|ref|YP_134551.1|	-	0.00012	21.6	0.0	0.00015	21.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
TraF	PF13728.1	gi|55376700|ref|YP_134551.1|	-	0.00033	20.1	0.0	0.00036	20.0	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
HyaE	PF07449.6	gi|55376700|ref|YP_134551.1|	-	0.0018	18.1	0.1	0.0032	17.3	0.0	1.4	2	0	0	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
DUF836	PF05768.9	gi|55376700|ref|YP_134551.1|	-	0.002	18.3	0.0	0.0025	18.0	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_4	PF13462.1	gi|55376700|ref|YP_134551.1|	-	0.015	15.3	0.0	0.02	14.8	0.0	1.3	1	1	0	1	1	1	0	Thioredoxin
Thioredoxin_5	PF13743.1	gi|55376700|ref|YP_134551.1|	-	0.021	14.3	0.0	0.038	13.5	0.0	1.4	1	1	0	1	1	1	0	Thioredoxin
Glutaredoxin	PF00462.19	gi|55376700|ref|YP_134551.1|	-	0.026	14.5	0.0	0.04	13.9	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin
AhpC-TSA	PF00578.16	gi|55376700|ref|YP_134551.1|	-	0.038	13.6	0.1	2.8	7.6	0.1	2.1	1	1	1	2	2	2	0	AhpC/TSA	family
Redoxin	PF08534.5	gi|55376700|ref|YP_134551.1|	-	0.06	12.8	0.2	3.4	7.2	0.1	1.9	1	1	1	2	2	2	0	Redoxin
Phosducin	PF02114.11	gi|55376700|ref|YP_134551.1|	-	0.085	11.5	0.0	0.097	11.3	0.0	1.0	1	0	0	1	1	1	0	Phosducin
TrbC_Ftype	PF09673.5	gi|55376700|ref|YP_134551.1|	-	0.099	12.2	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
DUF953	PF06110.6	gi|55376700|ref|YP_134551.1|	-	0.16	11.4	0.2	1.4	8.3	0.1	2.0	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
Pyr_redox_2	PF07992.9	gi|55376701|ref|YP_134552.1|	-	2.2e-29	102.7	3.6	1.5e-15	57.6	0.0	3.1	2	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|55376701|ref|YP_134552.1|	-	1e-23	83.4	1.4	1.4e-18	67.0	0.2	3.3	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|55376701|ref|YP_134552.1|	-	6.2e-13	48.7	0.0	6.2e-12	45.5	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
DAO	PF01266.19	gi|55376701|ref|YP_134552.1|	-	5.9e-08	32.0	6.4	0.43	9.4	0.0	4.2	4	0	0	4	4	4	4	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|55376701|ref|YP_134552.1|	-	4.1e-06	25.5	0.2	0.072	11.5	0.0	3.5	3	1	1	4	4	4	2	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|55376701|ref|YP_134552.1|	-	1.2e-05	25.2	0.8	0.025	14.5	0.0	2.9	3	0	0	3	3	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|55376701|ref|YP_134552.1|	-	0.00014	22.0	0.2	0.064	13.3	0.0	3.0	2	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.13	gi|55376701|ref|YP_134552.1|	-	0.0015	18.5	1.5	15	5.6	0.1	4.2	4	0	0	4	4	4	0	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|55376701|ref|YP_134552.1|	-	0.0034	16.7	0.1	0.16	11.3	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|55376701|ref|YP_134552.1|	-	0.013	15.2	1.2	0.014	15.0	0.1	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.19	gi|55376701|ref|YP_134552.1|	-	0.029	13.2	9.4	0.19	10.5	3.1	3.6	2	1	0	2	2	2	0	FAD	binding	domain
GIDA	PF01134.17	gi|55376701|ref|YP_134552.1|	-	0.039	12.8	0.2	2.3	6.9	0.0	2.2	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|55376701|ref|YP_134552.1|	-	0.085	11.7	0.1	9	5.0	0.0	2.9	3	0	0	3	3	3	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|55376701|ref|YP_134552.1|	-	0.19	11.5	5.2	43	3.8	0.0	4.0	3	1	1	4	4	4	0	FAD-NAD(P)-binding
E1-E2_ATPase	PF00122.15	gi|55376702|ref|YP_134553.1|	-	9.4e-74	247.3	2.9	2.5e-73	245.9	1.2	2.1	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.16	gi|55376702|ref|YP_134553.1|	-	1.8e-35	122.1	1.8	1.8e-35	122.1	1.2	1.9	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.21	gi|55376702|ref|YP_134553.1|	-	1.8e-35	123.3	6.2	3.9e-35	122.2	4.3	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like2	PF13246.1	gi|55376702|ref|YP_134553.1|	-	6.3e-20	70.9	0.0	1.8e-19	69.5	0.0	1.8	2	0	0	2	2	2	1	Putative	hydrolase	of	sodium-potassium	ATPase	alpha	subunit
HAD	PF12710.2	gi|55376702|ref|YP_134553.1|	-	1.4e-17	64.4	0.3	2.6e-17	63.6	0.2	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.21	gi|55376702|ref|YP_134553.1|	-	7.3e-15	54.1	0.0	1.5e-14	53.1	0.0	1.6	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.7	gi|55376702|ref|YP_134553.1|	-	9.6e-06	25.3	0.5	9.7e-05	22.0	0.4	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HTH_24	PF13412.1	gi|55376702|ref|YP_134553.1|	-	0.16	11.4	0.0	12	5.3	0.0	2.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Pyridox_ox_2	PF12900.2	gi|55376703|ref|YP_134554.1|	-	2.1e-17	63.2	0.0	2.4e-17	63.0	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|55376703|ref|YP_134554.1|	-	6.5e-06	26.0	0.0	8.1e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.21	gi|55376704|ref|YP_134555.1|	-	1.8e-66	222.6	3.0	4.1e-33	114.5	0.1	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF2267	PF10025.4	gi|55376705|ref|YP_134556.1|	-	2.1e-35	121.4	0.3	2.5e-35	121.2	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Pyridox_ox_2	PF12900.2	gi|55376706|ref|YP_134557.1|	-	1.4e-16	60.6	0.0	1.6e-16	60.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|55376706|ref|YP_134557.1|	-	0.00071	19.5	0.0	0.00094	19.1	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.21	gi|55376707|ref|YP_134558.1|	-	2.1e-31	109.0	2.5	2.3e-31	108.8	1.7	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
VWA_2	PF13519.1	gi|55376707|ref|YP_134558.1|	-	0.0054	16.8	0.1	0.0097	16.0	0.1	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DNA_photolyase	PF00875.13	gi|55376707|ref|YP_134558.1|	-	0.019	14.6	0.0	0.025	14.3	0.0	1.1	1	0	0	1	1	1	0	DNA	photolyase
Histidinol_dh	PF00815.15	gi|55376707|ref|YP_134558.1|	-	0.08	11.5	0.9	0.097	11.2	0.6	1.2	1	0	0	1	1	1	0	Histidinol	dehydrogenase
Glucan_synthase	PF02364.10	gi|55376708|ref|YP_134559.1|	-	0.049	11.5	0.2	0.061	11.2	0.1	1.0	1	0	0	1	1	1	0	1,3-beta-glucan	synthase	component
7TMR-DISM_7TM	PF07695.6	gi|55376708|ref|YP_134559.1|	-	0.051	13.2	7.3	0.059	13.0	5.1	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
COX15-CtaA	PF02628.10	gi|55376708|ref|YP_134559.1|	-	0.13	11.1	6.9	0.16	10.8	4.8	1.1	1	0	0	1	1	1	0	Cytochrome	oxidase	assembly	protein
DUF1772	PF08592.6	gi|55376708|ref|YP_134559.1|	-	1.4	8.6	5.2	1.1	9.0	2.6	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
MARVEL	PF01284.18	gi|55376708|ref|YP_134559.1|	-	1.9	8.3	7.2	12	5.7	5.2	1.8	1	1	0	1	1	1	0	Membrane-associating	domain
NosL	PF05573.7	gi|55376709|ref|YP_134560.1|	-	2.1e-44	150.8	0.0	2.6e-44	150.5	0.0	1.1	1	0	0	1	1	1	1	NosL
RRM_1	PF00076.17	gi|55376709|ref|YP_134560.1|	-	0.14	11.8	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
zf-FCS	PF06467.9	gi|55376709|ref|YP_134560.1|	-	0.75	9.4	3.7	3.1	7.5	2.6	2.0	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_20	PF12840.2	gi|55376710|ref|YP_134561.1|	-	2.9e-16	59.0	2.1	4e-09	36.1	0.6	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376710|ref|YP_134561.1|	-	1.3e-11	43.7	0.1	8.2e-07	28.3	0.1	3.1	4	0	0	4	4	3	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55376710|ref|YP_134561.1|	-	3.7e-10	39.3	0.2	2.4e-05	23.9	0.1	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|55376710|ref|YP_134561.1|	-	7.2e-08	32.0	0.0	0.00021	20.9	0.0	2.4	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|55376710|ref|YP_134561.1|	-	3.7e-07	29.7	4.8	7e-05	22.4	0.7	3.1	3	2	0	3	3	3	2	MarR	family
HTH_11	PF08279.7	gi|55376710|ref|YP_134561.1|	-	6.5e-07	28.9	0.1	1.1e-05	24.9	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
HTH_10	PF04967.7	gi|55376710|ref|YP_134561.1|	-	4.3e-06	26.2	0.0	0.11	12.0	0.0	2.8	2	1	0	2	2	2	2	HTH	DNA	binding	domain
HTH_34	PF13601.1	gi|55376710|ref|YP_134561.1|	-	5.7e-06	26.2	0.0	0.13	12.3	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|55376710|ref|YP_134561.1|	-	0.00011	22.2	0.1	0.0078	16.3	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|55376710|ref|YP_134561.1|	-	0.00024	20.6	0.5	0.0074	15.8	0.4	2.5	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|55376710|ref|YP_134561.1|	-	0.00039	20.0	0.0	0.0032	17.1	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|55376710|ref|YP_134561.1|	-	0.00064	19.2	0.4	0.0048	16.4	0.2	2.3	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|55376710|ref|YP_134561.1|	-	0.0011	18.7	0.0	0.0025	17.5	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|55376710|ref|YP_134561.1|	-	0.0022	17.5	0.7	0.0074	15.9	0.2	2.1	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_17	PF12728.2	gi|55376710|ref|YP_134561.1|	-	0.0023	18.1	0.2	0.15	12.2	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|55376710|ref|YP_134561.1|	-	0.0031	17.0	0.0	0.0068	15.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|55376710|ref|YP_134561.1|	-	0.005	16.7	0.0	0.26	11.2	0.0	2.5	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FaeA	PF04703.7	gi|55376710|ref|YP_134561.1|	-	0.0057	16.7	0.1	1.4	9.0	0.0	2.2	2	0	0	2	2	2	1	FaeA-like	protein
HTH_27	PF13463.1	gi|55376710|ref|YP_134561.1|	-	0.0058	16.9	0.4	0.21	11.9	0.1	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Phage_CI_repr	PF07022.8	gi|55376710|ref|YP_134561.1|	-	0.0059	16.6	0.2	0.02	14.9	0.0	1.8	2	0	0	2	2	2	1	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_CodY	PF08222.6	gi|55376710|ref|YP_134561.1|	-	0.008	15.4	0.0	0.051	12.9	0.0	2.0	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
TetR_N	PF00440.18	gi|55376710|ref|YP_134561.1|	-	0.0097	15.5	0.1	0.03	13.9	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
HTH_3	PF01381.17	gi|55376710|ref|YP_134561.1|	-	0.013	15.3	0.0	0.025	14.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
HTH_DeoR	PF08220.7	gi|55376710|ref|YP_134561.1|	-	0.028	13.9	0.0	0.098	12.2	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.1	gi|55376710|ref|YP_134561.1|	-	0.029	14.3	0.0	1.3	9.0	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_40	PF14493.1	gi|55376710|ref|YP_134561.1|	-	0.035	14.3	0.1	0.24	11.6	0.0	2.2	2	1	1	3	3	3	0	Helix-turn-helix	domain
GerE	PF00196.14	gi|55376710|ref|YP_134561.1|	-	0.048	12.9	0.0	0.15	11.4	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.11	gi|55376710|ref|YP_134561.1|	-	0.049	12.9	0.0	0.16	11.2	0.0	2.0	1	1	0	1	1	1	0	Sigma-70,	region	4
DUF2513	PF10711.4	gi|55376710|ref|YP_134561.1|	-	0.049	13.7	0.0	1.6	8.8	0.0	2.2	2	0	0	2	2	2	0	Hypothetical	protein	(DUF2513)
HTH_Mga	PF08280.6	gi|55376710|ref|YP_134561.1|	-	0.12	12.1	0.0	0.18	11.5	0.0	1.2	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_31	PF13560.1	gi|55376710|ref|YP_134561.1|	-	0.28	11.4	8.0	1.3	9.2	5.5	2.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
ABC2_membrane_2	PF12679.2	gi|55376711|ref|YP_134562.1|	-	2e-05	23.5	18.6	0.00014	20.8	12.9	2.2	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
HrcA_DNA-bdg	PF03444.10	gi|55376711|ref|YP_134562.1|	-	0.17	11.3	0.2	0.37	10.2	0.2	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
ABC2_membrane_3	PF12698.2	gi|55376711|ref|YP_134562.1|	-	0.52	9.2	19.3	0.16	11.0	11.3	1.7	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|55376712|ref|YP_134563.1|	-	1.9e-27	96.2	0.0	2.5e-27	95.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376712|ref|YP_134563.1|	-	2.9e-19	70.1	0.0	1.8e-10	41.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|55376712|ref|YP_134563.1|	-	2.9e-05	23.3	0.0	0.14	11.4	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.1	gi|55376712|ref|YP_134563.1|	-	0.00089	17.8	0.0	0.089	11.2	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|55376712|ref|YP_134563.1|	-	0.00098	19.5	0.1	0.0014	19.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|55376712|ref|YP_134563.1|	-	0.0026	17.2	0.1	0.0049	16.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|55376712|ref|YP_134563.1|	-	0.0086	15.9	0.0	0.015	15.2	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|55376712|ref|YP_134563.1|	-	0.018	14.7	0.1	0.034	13.8	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_15	PF13175.1	gi|55376712|ref|YP_134563.1|	-	0.027	13.5	0.0	1.2	8.1	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
cobW	PF02492.14	gi|55376712|ref|YP_134563.1|	-	0.027	13.8	0.7	0.055	12.9	0.3	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
SbcCD_C	PF13558.1	gi|55376712|ref|YP_134563.1|	-	0.031	14.2	0.0	0.12	12.2	0.0	1.9	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
DUF258	PF03193.11	gi|55376712|ref|YP_134563.1|	-	0.064	12.4	0.0	0.099	11.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|55376712|ref|YP_134563.1|	-	0.068	13.9	0.3	0.21	12.3	0.2	1.9	2	1	0	2	2	2	0	AAA	domain
NosD	PF05048.8	gi|55376713|ref|YP_134564.1|	-	8e-27	93.9	3.1	2.8e-26	92.1	1.0	2.0	1	1	1	2	2	2	1	Periplasmic	copper-binding	protein	(NosD)
NosL	PF05573.7	gi|55376713|ref|YP_134564.1|	-	2.4e-13	50.0	0.0	4.3e-13	49.2	0.0	1.3	1	0	0	1	1	1	1	NosL
Beta_helix	PF13229.1	gi|55376713|ref|YP_134564.1|	-	3e-13	49.8	18.6	4.5e-11	42.7	7.8	3.2	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF1565	PF07602.6	gi|55376713|ref|YP_134564.1|	-	0.0013	17.9	15.3	0.25	10.4	10.6	2.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1565)
PsaM	PF07465.8	gi|55376713|ref|YP_134564.1|	-	2.9	7.5	5.6	5.1	6.7	3.9	1.4	1	0	0	1	1	1	0	Photosystem	I	protein	M	(PsaM)
Molybdopterin	PF00384.17	gi|55376714|ref|YP_134565.1|	-	3.4e-80	269.9	0.0	4.1e-80	269.6	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|55376714|ref|YP_134565.1|	-	8.9e-33	112.3	0.0	1.7e-32	111.4	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|55376714|ref|YP_134565.1|	-	1.1e-06	28.3	2.2	3.5e-06	26.7	1.5	1.9	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
DUF969	PF06149.7	gi|55376715|ref|YP_134566.1|	-	0.012	14.8	0.7	0.013	14.7	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
IMPDH	PF00478.20	gi|55376716|ref|YP_134567.1|	-	2.7e-110	368.5	4.9	4e-110	368.0	3.4	1.2	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.10	gi|55376716|ref|YP_134567.1|	-	1.6e-08	34.1	14.8	5e-07	29.1	10.3	2.1	1	1	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.13	gi|55376716|ref|YP_134567.1|	-	4.7e-06	25.7	8.1	9.6e-06	24.6	5.5	1.5	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.16	gi|55376716|ref|YP_134567.1|	-	1.9e-05	24.0	1.2	0.00027	20.3	0.0	2.4	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
Glu_synthase	PF01645.12	gi|55376716|ref|YP_134567.1|	-	0.00099	18.1	6.7	0.0099	14.8	4.5	2.5	2	1	0	2	2	2	1	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.16	gi|55376716|ref|YP_134567.1|	-	0.0068	15.4	0.6	0.0068	15.4	0.4	1.8	2	1	0	2	2	2	1	Dihydroorotate	dehydrogenase
Aldolase	PF01081.14	gi|55376716|ref|YP_134567.1|	-	0.011	14.9	5.2	0.018	14.1	0.5	2.8	1	1	1	3	3	3	0	KDPG	and	KHG	aldolase
TMP-TENI	PF02581.12	gi|55376716|ref|YP_134567.1|	-	0.014	14.5	5.5	0.027	13.5	3.7	1.6	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase/TENI
PcrB	PF01884.12	gi|55376716|ref|YP_134567.1|	-	0.06	12.5	0.4	0.06	12.5	0.3	2.0	2	1	0	2	2	2	0	PcrB	family
ThiG	PF05690.9	gi|55376716|ref|YP_134567.1|	-	1.3	8.0	10.7	0.063	12.3	0.8	2.9	2	1	1	3	3	3	0	Thiazole	biosynthesis	protein	ThiG
Response_reg	PF00072.19	gi|55376718|ref|YP_134569.1|	-	6.9e-20	71.1	0.0	2e-19	69.6	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.21	gi|55376718|ref|YP_134569.1|	-	3.1e-19	68.7	0.1	1.3e-18	66.7	0.0	2.1	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.5	gi|55376718|ref|YP_134569.1|	-	1.5e-18	66.8	0.1	3.2e-18	65.7	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
GAF_2	PF13185.1	gi|55376718|ref|YP_134569.1|	-	5.9e-16	59.2	1.8	1.5e-14	54.7	0.0	2.9	3	1	0	3	3	3	1	GAF	domain
HisKA	PF00512.20	gi|55376718|ref|YP_134569.1|	-	6.8e-16	58.0	4.5	1.4e-15	57.0	1.2	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.1	gi|55376718|ref|YP_134569.1|	-	3.2e-14	53.1	0.1	1.2e-13	51.3	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.19	gi|55376718|ref|YP_134569.1|	-	1.6e-10	40.7	0.0	4.1e-10	39.4	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.21	gi|55376718|ref|YP_134569.1|	-	3e-10	40.4	0.2	3.1e-09	37.1	0.0	2.4	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.1	gi|55376718|ref|YP_134569.1|	-	9.2e-08	32.2	0.2	3.3e-07	30.4	0.0	2.1	2	1	0	2	2	2	1	GAF	domain
PAS_3	PF08447.6	gi|55376718|ref|YP_134569.1|	-	0.00011	22.2	0.0	0.00043	20.3	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.1	gi|55376718|ref|YP_134569.1|	-	0.00011	21.8	0.0	0.00044	20.0	0.0	2.0	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.1	gi|55376718|ref|YP_134569.1|	-	0.00027	20.5	0.0	0.00066	19.3	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
ING	PF12998.2	gi|55376718|ref|YP_134569.1|	-	0.15	12.3	3.1	2.1	8.6	0.1	2.9	3	0	0	3	3	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
PAS_4	PF08448.5	gi|55376719|ref|YP_134570.1|	-	1.5e-50	169.7	19.1	4e-14	52.5	0.0	6.7	6	1	0	6	6	6	4	PAS	fold
PAS_9	PF13426.1	gi|55376719|ref|YP_134570.1|	-	2.5e-48	162.7	6.6	3.8e-15	56.1	0.0	5.6	5	0	0	5	5	5	5	PAS	domain
PAS	PF00989.19	gi|55376719|ref|YP_134570.1|	-	1.7e-33	114.7	4.4	1.2e-13	50.8	0.0	6.0	5	1	0	5	5	5	5	PAS	fold
PAS_8	PF13188.1	gi|55376719|ref|YP_134570.1|	-	2.8e-21	74.5	0.2	7.1e-07	28.8	0.0	5.4	4	0	0	4	4	4	4	PAS	domain
PAS_3	PF08447.6	gi|55376719|ref|YP_134570.1|	-	6e-19	67.9	0.4	1.5e-10	41.0	0.1	3.9	4	0	0	4	4	4	2	PAS	fold
GAF_3	PF13492.1	gi|55376719|ref|YP_134570.1|	-	1.3e-18	67.3	2.8	4.1e-09	36.6	0.1	3.6	3	0	0	3	3	3	2	GAF	domain
HATPase_c	PF02518.21	gi|55376719|ref|YP_134570.1|	-	1.4e-18	66.6	0.1	3e-18	65.5	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.1	gi|55376719|ref|YP_134570.1|	-	1.6e-15	57.9	7.4	6.6e-08	33.1	0.6	3.9	3	0	0	3	3	3	2	GAF	domain
Response_reg	PF00072.19	gi|55376719|ref|YP_134570.1|	-	6.2e-13	48.7	0.1	2.3e-12	46.9	0.0	2.0	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HisKA	PF00512.20	gi|55376719|ref|YP_134570.1|	-	1.1e-12	47.6	0.8	1.1e-12	47.6	0.6	3.5	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.1	gi|55376719|ref|YP_134570.1|	-	0.00039	20.6	0.0	0.017	15.3	0.0	3.3	3	0	0	3	3	3	1	PAS	domain
ELFV_dehydrog	PF00208.16	gi|55376720|ref|YP_134571.1|	-	9.3e-72	241.5	0.2	1.1e-71	241.2	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|55376720|ref|YP_134571.1|	-	1e-52	177.1	0.0	1.6e-52	176.5	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.14	gi|55376720|ref|YP_134571.1|	-	0.0039	16.3	0.0	0.0072	15.4	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|55376720|ref|YP_134571.1|	-	0.016	14.6	0.0	0.03	13.6	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
AlaDh_PNT_C	PF01262.16	gi|55376720|ref|YP_134571.1|	-	0.049	13.1	1.2	0.25	10.8	0.0	2.1	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
AdoHcyase_NAD	PF00670.16	gi|55376720|ref|YP_134571.1|	-	0.1	12.4	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
zf-C2HC5	PF06221.8	gi|55376721|ref|YP_134572.1|	-	0.0015	18.2	0.5	0.0017	18.0	0.3	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
Zn-ribbon_8	PF09723.5	gi|55376721|ref|YP_134572.1|	-	0.0059	16.5	2.3	0.011	15.6	1.6	1.5	1	1	0	1	1	1	1	Zinc	ribbon	domain
DUF1272	PF06906.6	gi|55376721|ref|YP_134572.1|	-	0.017	14.9	0.7	0.02	14.7	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
C1_1	PF00130.17	gi|55376721|ref|YP_134572.1|	-	0.033	13.9	0.9	0.04	13.6	0.6	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
YhfH	PF14149.1	gi|55376721|ref|YP_134572.1|	-	0.036	13.8	4.2	2.4	8.0	0.1	2.2	1	1	1	2	2	2	0	YhfH-like	protein
DZR	PF12773.2	gi|55376721|ref|YP_134572.1|	-	0.052	13.3	1.4	0.061	13.1	0.9	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
XPA_N	PF01286.13	gi|55376721|ref|YP_134572.1|	-	0.052	13.2	1.9	3.8	7.2	0.2	2.1	2	0	0	2	2	2	0	XPA	protein	N-terminal
zf-H2C2_2	PF13465.1	gi|55376721|ref|YP_134572.1|	-	0.061	13.6	0.2	0.061	13.6	0.1	1.7	2	0	0	2	2	2	0	Zinc-finger	double	domain
RNA_pol_N	PF01194.12	gi|55376721|ref|YP_134572.1|	-	0.13	12.2	1.8	0.22	11.5	1.3	1.5	1	1	0	1	1	1	0	RNA	polymerases	N	/	8	kDa	subunit
HypA	PF01155.14	gi|55376721|ref|YP_134572.1|	-	0.14	11.8	1.1	0.15	11.7	0.8	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-IS66	PF13005.2	gi|55376721|ref|YP_134572.1|	-	0.14	12.1	2.3	0.18	11.8	0.2	1.9	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
NOB1_Zn_bind	PF08772.6	gi|55376721|ref|YP_134572.1|	-	0.15	11.9	0.8	0.18	11.6	0.6	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
Prim_Zn_Ribbon	PF08273.7	gi|55376721|ref|YP_134572.1|	-	0.15	12.1	1.7	1.8	8.7	0.1	2.1	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
A2L_zn_ribbon	PF08792.5	gi|55376721|ref|YP_134572.1|	-	0.3	10.5	3.1	0.4	10.1	0.3	2.0	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|55376721|ref|YP_134572.1|	-	0.59	9.8	3.2	1.7	8.3	0.1	2.0	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
GAF_2	PF13185.1	gi|55376722|ref|YP_134573.1|	-	6e-27	94.9	2.3	1.1e-15	58.3	0.0	3.0	2	0	0	2	2	2	2	GAF	domain
GAF_3	PF13492.1	gi|55376722|ref|YP_134573.1|	-	1.6e-18	67.0	0.2	2.6e-10	40.4	0.1	2.8	2	0	0	2	2	2	2	GAF	domain
HTH_10	PF04967.7	gi|55376722|ref|YP_134573.1|	-	4.6e-17	61.3	0.0	1.7e-16	59.5	0.0	2.1	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_9	PF13426.1	gi|55376722|ref|YP_134573.1|	-	1.4e-14	54.2	0.7	2.8e-08	34.0	0.0	3.1	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.5	gi|55376722|ref|YP_134573.1|	-	4.2e-12	46.0	4.7	1.4e-09	37.9	0.3	3.8	3	1	0	3	3	3	2	PAS	fold
Response_reg	PF00072.19	gi|55376722|ref|YP_134573.1|	-	1.9e-11	43.9	0.1	1.6e-10	41.0	0.0	2.7	3	0	0	3	3	3	1	Response	regulator	receiver	domain
GAF	PF01590.21	gi|55376722|ref|YP_134573.1|	-	1.3e-09	38.3	5.0	5.8e-05	23.2	0.0	3.5	4	0	0	4	4	4	2	GAF	domain
PAS	PF00989.19	gi|55376722|ref|YP_134573.1|	-	5e-06	26.2	6.1	0.00071	19.3	0.0	3.9	5	0	0	5	5	5	2	PAS	fold
PAS_7	PF12860.2	gi|55376722|ref|YP_134573.1|	-	0.002	18.0	2.6	1	9.3	0.0	4.1	3	2	0	3	3	3	2	PAS	fold
HTH_22	PF13309.1	gi|55376722|ref|YP_134573.1|	-	0.08	12.7	0.1	0.63	9.8	0.0	2.7	2	1	0	2	2	2	0	HTH	domain
RHH_1	PF01402.16	gi|55376723|ref|YP_134574.1|	-	5.6e-10	38.6	0.9	1.4e-09	37.4	0.0	2.2	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|55376723|ref|YP_134574.1|	-	0.0012	18.5	0.3	0.0043	16.7	0.0	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	domain
TraY	PF05509.6	gi|55376723|ref|YP_134574.1|	-	0.015	15.0	0.2	0.081	12.7	0.0	2.1	2	0	0	2	2	2	0	TraY	domain
PUB	PF09409.5	gi|55376723|ref|YP_134574.1|	-	0.016	14.9	0.0	0.041	13.6	0.0	1.7	1	0	0	1	1	1	0	PUB	domain
RTTN_N	PF14726.1	gi|55376723|ref|YP_134574.1|	-	0.025	15.1	0.1	0.042	14.4	0.1	1.4	1	0	0	1	1	1	0	Rotatin,	an	armadillo	repeat	protein,	centriole	functioning
RepB-RCR_reg	PF10723.4	gi|55376723|ref|YP_134574.1|	-	0.036	13.8	0.0	0.065	12.9	0.0	1.3	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
Imm16	PF15565.1	gi|55376723|ref|YP_134574.1|	-	0.072	12.9	0.5	0.15	11.9	0.4	1.5	1	0	0	1	1	1	0	Immunity	protein	16
Nramp	PF01566.13	gi|55376724|ref|YP_134575.1|	-	1e-100	337.0	24.7	1.2e-100	336.7	17.1	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
Hydantoinase_A	PF01968.13	gi|55376725|ref|YP_134576.1|	-	2.4e-91	305.8	12.4	4.2e-90	301.7	4.1	2.4	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|55376725|ref|YP_134576.1|	-	2.6e-51	173.6	2.3	2e-50	170.7	0.2	2.5	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.1	gi|55376725|ref|YP_134576.1|	-	0.00088	17.7	4.5	0.0064	14.8	0.2	2.5	3	0	0	3	3	3	2	MutL	protein
Hydantoinase_B	PF02538.9	gi|55376726|ref|YP_134577.1|	-	1.3e-152	508.6	0.0	1.6e-152	508.4	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
DUF1702	PF08012.6	gi|55376726|ref|YP_134577.1|	-	0.068	11.7	0.4	5.2	5.5	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1702)
DUF3592	PF12158.3	gi|55376727|ref|YP_134578.1|	-	8.2e-21	74.3	3.7	1.1e-20	73.9	1.4	2.0	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3592)
SUR7	PF06687.7	gi|55376727|ref|YP_134578.1|	-	0.056	13.0	0.0	0.15	11.5	0.0	1.7	2	0	0	2	2	2	0	SUR7/PalI	family
DUF4064	PF13273.1	gi|55376727|ref|YP_134578.1|	-	0.11	12.6	0.2	0.46	10.6	0.0	2.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4064)
PAS_9	PF13426.1	gi|55376728|ref|YP_134579.1|	-	8.6e-14	51.7	0.0	1.4e-13	51.1	0.0	1.3	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.19	gi|55376728|ref|YP_134579.1|	-	0.00039	20.1	0.0	0.00058	19.6	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
Na_H_antiporter	PF03553.9	gi|55376730|ref|YP_134581.1|	-	2.6e-51	174.4	47.7	3.4e-51	174.0	18.4	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
IclR	PF01614.13	gi|55376732|ref|YP_134583.1|	-	4.5e-35	120.1	0.1	3.1e-34	117.4	0.0	2.1	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|55376732|ref|YP_134583.1|	-	1.1e-07	31.3	0.4	2.5e-07	30.1	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376732|ref|YP_134583.1|	-	4.8e-05	22.6	0.0	0.00014	21.1	0.0	1.9	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|55376732|ref|YP_134583.1|	-	0.00022	20.7	0.0	0.00042	19.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|55376732|ref|YP_134583.1|	-	0.00028	20.6	0.0	0.0009	19.0	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix
MarR_2	PF12802.2	gi|55376732|ref|YP_134583.1|	-	0.0012	18.5	0.0	0.003	17.1	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|55376732|ref|YP_134583.1|	-	0.0012	19.0	0.5	0.011	16.0	0.0	2.7	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|55376732|ref|YP_134583.1|	-	0.0021	17.8	0.0	0.0047	16.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|55376732|ref|YP_134583.1|	-	0.0039	16.8	0.0	0.0099	15.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|55376732|ref|YP_134583.1|	-	0.013	15.2	0.0	0.041	13.5	0.0	1.9	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
APC2	PF08672.6	gi|55376732|ref|YP_134583.1|	-	0.039	14.2	0.0	0.085	13.1	0.0	1.6	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
HTH_Crp_2	PF13545.1	gi|55376732|ref|YP_134583.1|	-	0.071	12.9	0.1	4.7	7.0	0.0	2.9	2	1	1	3	3	3	0	Crp-like	helix-turn-helix	domain
Tn7_Tnp_TnsA_C	PF08721.6	gi|55376732|ref|YP_134583.1|	-	0.078	13.0	0.0	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	TnsA	endonuclease	C	terminal
Laminin_G_3	PF13385.1	gi|55376732|ref|YP_134583.1|	-	0.22	11.7	0.5	0.84	9.8	0.4	1.8	1	1	0	1	1	1	0	Concanavalin	A-like	lectin/glucanases	superfamily
NAD_binding_8	PF13450.1	gi|55376733|ref|YP_134584.1|	-	2.7e-05	24.0	0.6	5.7e-05	23.0	0.4	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.16	gi|55376733|ref|YP_134584.1|	-	0.0032	17.0	0.0	0.008	15.7	0.0	1.5	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.9	gi|55376733|ref|YP_134584.1|	-	0.0077	16.1	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|55376733|ref|YP_134584.1|	-	0.0099	14.3	0.0	0.015	13.7	0.0	1.2	1	0	0	1	1	1	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|55376733|ref|YP_134584.1|	-	0.015	14.1	0.1	0.03	13.1	0.1	1.4	1	0	0	1	1	1	0	FAD	binding	domain
DAO	PF01266.19	gi|55376733|ref|YP_134584.1|	-	0.018	13.9	0.6	0.04	12.8	0.2	1.6	1	1	1	2	2	2	0	FAD	dependent	oxidoreductase
CbiG_C	PF01890.11	gi|55376733|ref|YP_134584.1|	-	0.076	13.2	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	Cobalamin	synthesis	G	C-terminus
Pyr_redox	PF00070.22	gi|55376733|ref|YP_134584.1|	-	0.092	13.1	0.2	0.17	12.2	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|55376733|ref|YP_134584.1|	-	0.13	11.1	0.1	0.19	10.5	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
DDE_Tnp_IS240	PF13610.1	gi|55376734|ref|YP_134585.1|	-	3.8e-20	72.2	0.2	5.4e-20	71.7	0.2	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.1	gi|55376734|ref|YP_134585.1|	-	6.1e-08	32.0	3.0	1.2e-07	31.1	2.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|55376734|ref|YP_134585.1|	-	0.00043	20.3	0.2	0.00082	19.4	0.1	1.6	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.5	gi|55376734|ref|YP_134585.1|	-	0.0011	18.7	2.8	0.16	11.8	0.1	2.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2384)
DDE_Tnp_IS66	PF03050.9	gi|55376734|ref|YP_134585.1|	-	0.039	13.1	0.2	0.079	12.1	0.1	1.7	1	1	0	1	1	1	0	Transposase	IS66	family
DUF2999	PF11212.3	gi|55376735|ref|YP_134586.1|	-	0.14	12.1	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2999)
CbiA	PF01656.18	gi|55376736|ref|YP_134587.1|	-	5.1e-25	88.0	0.0	8.5e-25	87.3	0.0	1.3	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55376736|ref|YP_134587.1|	-	8.8e-11	41.9	0.0	6.4e-09	35.9	0.0	2.6	3	0	0	3	3	3	1	AAA	domain
MipZ	PF09140.6	gi|55376736|ref|YP_134587.1|	-	4.7e-07	29.1	0.0	8.5e-05	21.7	0.0	2.5	2	0	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|55376736|ref|YP_134587.1|	-	1.1e-06	27.9	0.1	8.6e-06	25.0	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|55376736|ref|YP_134587.1|	-	0.00012	21.5	0.0	0.00019	20.8	0.0	1.3	1	0	0	1	1	1	1	YhjQ	protein
Fer4_NifH	PF00142.13	gi|55376736|ref|YP_134587.1|	-	0.00071	18.8	0.0	0.0012	18.0	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|55376736|ref|YP_134587.1|	-	0.021	14.2	0.1	0.058	12.7	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
NHase_alpha	PF02979.11	gi|55376736|ref|YP_134587.1|	-	0.022	14.0	0.0	0.043	13.0	0.0	1.5	1	0	0	1	1	1	0	Nitrile	hydratase,	alpha	chain
AAA_10	PF12846.2	gi|55376736|ref|YP_134587.1|	-	0.04	13.3	0.1	0.22	10.8	0.0	2.0	1	1	1	2	2	2	0	AAA-like	domain
AAA_16	PF13191.1	gi|55376736|ref|YP_134587.1|	-	0.05	13.5	0.1	0.11	12.4	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_24	PF13479.1	gi|55376736|ref|YP_134587.1|	-	0.16	11.5	0.1	1	8.9	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
Phage_integrase	PF00589.17	gi|55376737|ref|YP_134588.1|	-	9.3e-10	38.4	0.0	1.7e-09	37.6	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|55376737|ref|YP_134588.1|	-	0.006	16.8	0.2	0.071	13.4	0.0	2.6	2	1	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Peptidase_M13_N	PF05649.8	gi|55376737|ref|YP_134588.1|	-	0.02	13.9	0.0	0.034	13.1	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	M13
DUF1932	PF09130.6	gi|55376737|ref|YP_134588.1|	-	0.3	10.8	2.6	18	5.1	0.0	3.3	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF1932)
DUF2937	PF11157.3	gi|55376737|ref|YP_134588.1|	-	1.8	7.8	4.3	13	5.1	0.3	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
Bac_export_3	PF01313.14	gi|55376738|ref|YP_134589.1|	-	0.13	11.9	0.2	0.15	11.7	0.1	1.0	1	0	0	1	1	1	0	Bacterial	export	proteins,	family	3
SBF	PF01758.11	gi|55376739|ref|YP_134590.1|	-	2.5e-38	131.3	9.9	3.9e-38	130.7	6.9	1.3	1	0	0	1	1	1	1	Sodium	Bile	acid	symporter	family
DUF4137	PF13593.1	gi|55376739|ref|YP_134590.1|	-	3.4e-14	52.6	11.6	3.8e-14	52.4	8.0	1.1	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
Mem_trans	PF03547.13	gi|55376739|ref|YP_134590.1|	-	0.019	13.2	10.5	0.033	12.4	1.7	2.3	2	1	0	2	2	2	0	Membrane	transport	protein
DUF162	PF02589.10	gi|55376740|ref|YP_134591.1|	-	1.8e-34	118.9	0.2	2e-34	118.7	0.1	1.1	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Secretin_N	PF03958.12	gi|55376740|ref|YP_134591.1|	-	0.0087	16.2	0.4	0.029	14.5	0.1	2.0	1	1	1	2	2	2	1	Bacterial	type	II/III	secretion	system	short	domain
OKR_DC_1_N	PF03709.10	gi|55376740|ref|YP_134591.1|	-	0.01	15.8	0.1	0.027	14.5	0.1	1.7	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
BOFC_N	PF08977.5	gi|55376740|ref|YP_134591.1|	-	0.55	10.0	2.8	19	5.1	0.4	2.4	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
TetR_C_6	PF13977.1	gi|55376741|ref|YP_134592.1|	-	7.6e-12	45.2	0.1	1.2e-11	44.6	0.1	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|55376741|ref|YP_134592.1|	-	3.9e-10	39.1	0.1	8.7e-10	38.0	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
HTH_38	PF13936.1	gi|55376741|ref|YP_134592.1|	-	0.026	14.0	0.0	0.062	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
TetR_C_7	PF14246.1	gi|55376741|ref|YP_134592.1|	-	0.11	12.6	0.1	0.44	10.8	0.0	1.9	2	0	0	2	2	2	0	AefR-like	transcriptional	repressor,	C-terminal	region
MMPL	PF03176.10	gi|55376742|ref|YP_134593.1|	-	1.5e-28	99.4	25.5	6.8e-21	74.3	1.6	2.6	2	1	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|55376742|ref|YP_134593.1|	-	3.1e-10	39.7	3.3	1.7e-07	30.8	0.1	2.8	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|55376742|ref|YP_134593.1|	-	1.9e-09	36.0	13.6	4.6e-09	34.7	3.6	2.2	2	0	0	2	2	2	2	Patched	family
CARDB	PF07705.6	gi|55376743|ref|YP_134594.1|	-	4.7e-12	45.8	22.2	0.0089	16.0	0.3	5.6	5	1	0	5	5	5	4	CARDB
NPCBM_assoc	PF10633.4	gi|55376743|ref|YP_134594.1|	-	1.8e-09	37.4	24.8	0.00042	20.2	0.3	8.2	6	4	2	8	8	8	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Transglut_C	PF00927.17	gi|55376743|ref|YP_134594.1|	-	4.5e-06	26.6	0.6	4.2	7.4	0.0	5.0	6	0	0	6	6	6	2	Transglutaminase	family,	C-terminal	ig	like	domain
DUF11	PF01345.13	gi|55376743|ref|YP_134594.1|	-	4.3e-05	23.4	29.2	0.19	11.8	0.8	5.6	5	0	0	5	5	5	4	Domain	of	unknown	function	DUF11
DUF2393	PF09624.5	gi|55376743|ref|YP_134594.1|	-	0.00021	20.8	5.4	1.1	8.7	0.1	4.8	5	1	0	5	5	5	2	Protein	of	unknown	function	(DUF2393)
AP3B1_C	PF14796.1	gi|55376743|ref|YP_134594.1|	-	0.18	11.4	4.5	0.26	10.9	0.0	3.2	4	0	0	4	4	4	0	Clathrin-adaptor	complex-3	beta-1	subunit	C-terminal
DUF1573	PF07610.6	gi|55376743|ref|YP_134594.1|	-	2.3	7.8	5.9	26	4.4	0.6	4.0	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1573)
TRAP_beta	PF05753.9	gi|55376743|ref|YP_134594.1|	-	2.7	7.1	7.1	2.3	7.3	0.1	3.6	4	1	0	4	4	4	0	Translocon-associated	protein	beta	(TRAPB)
TetR_C_6	PF13977.1	gi|55376744|ref|YP_134595.1|	-	4.2e-12	46.0	0.2	6.2e-12	45.5	0.1	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|55376744|ref|YP_134595.1|	-	1.6e-10	40.4	0.3	3e-10	39.5	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4	PF04545.11	gi|55376744|ref|YP_134595.1|	-	0.033	13.5	0.0	0.08	12.2	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF3139	PF11337.3	gi|55376744|ref|YP_134595.1|	-	0.077	13.2	0.1	0.14	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3139)
HTH_5	PF01022.15	gi|55376744|ref|YP_134595.1|	-	0.086	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.1	gi|55376744|ref|YP_134595.1|	-	0.13	11.8	0.0	0.44	10.1	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Hemopexin	PF00045.14	gi|55376745|ref|YP_134596.1|	-	0.016	14.9	0.7	0.16	11.7	0.2	2.4	2	0	0	2	2	2	0	Hemopexin
Cdc6_C	PF09079.6	gi|55376747|ref|YP_134598.1|	-	1.1e-23	82.7	0.0	4.2e-23	80.8	0.0	2.0	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|55376747|ref|YP_134598.1|	-	4.9e-10	39.6	0.0	3.6e-09	36.8	0.0	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55376747|ref|YP_134598.1|	-	6.1e-09	36.1	0.0	1.6e-08	34.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|55376747|ref|YP_134598.1|	-	0.002	17.0	0.0	0.0034	16.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|55376747|ref|YP_134598.1|	-	0.0026	17.5	0.0	0.004	16.8	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
AAA	PF00004.24	gi|55376747|ref|YP_134598.1|	-	0.0047	17.1	0.0	0.013	15.7	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|55376747|ref|YP_134598.1|	-	0.0097	15.5	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
RNA_helicase	PF00910.17	gi|55376747|ref|YP_134598.1|	-	0.029	14.5	0.0	0.06	13.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Bac_DnaA	PF00308.13	gi|55376747|ref|YP_134598.1|	-	0.14	11.8	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
DEAD	PF00270.24	gi|55376747|ref|YP_134598.1|	-	0.15	11.4	0.4	15	4.9	0.1	2.3	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
HTH_10	PF04967.7	gi|55376748|ref|YP_134599.1|	-	7.1e-17	60.7	0.0	1.1e-16	60.0	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_38	PF13936.1	gi|55376748|ref|YP_134599.1|	-	0.0019	17.7	0.0	0.0041	16.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|55376748|ref|YP_134599.1|	-	0.0019	17.9	0.0	0.0031	17.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR_2	PF12802.2	gi|55376748|ref|YP_134599.1|	-	0.0025	17.4	0.0	0.0055	16.3	0.0	1.6	1	0	0	1	1	1	1	MarR	family
Sigma70_r4_2	PF08281.7	gi|55376748|ref|YP_134599.1|	-	0.0026	17.1	0.0	0.014	14.8	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_20	PF12840.2	gi|55376748|ref|YP_134599.1|	-	0.0041	16.8	0.0	0.0099	15.6	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376748|ref|YP_134599.1|	-	0.0096	15.5	0.0	0.02	14.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.1	gi|55376748|ref|YP_134599.1|	-	0.011	15.3	0.0	0.025	14.2	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_30	PF13556.1	gi|55376748|ref|YP_134599.1|	-	0.032	13.8	0.0	0.064	12.8	0.0	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
CENP-B_N	PF04218.8	gi|55376748|ref|YP_134599.1|	-	0.032	13.6	0.0	0.057	12.8	0.0	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
GerE	PF00196.14	gi|55376748|ref|YP_134599.1|	-	0.064	12.5	0.0	0.21	10.8	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Tnp_ISL3	PF13542.1	gi|55376748|ref|YP_134599.1|	-	0.085	12.0	0.0	0.17	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Oxidored_q6	PF01058.17	gi|55376749|ref|YP_134600.1|	-	6.9e-22	77.4	0.1	1e-21	76.9	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Peripla_BP_2	PF01497.13	gi|55376750|ref|YP_134601.1|	-	6.1e-13	48.4	0.0	1.4e-12	47.2	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
GFO_IDH_MocA	PF01408.17	gi|55376751|ref|YP_134602.1|	-	4e-22	78.9	0.0	1e-21	77.6	0.0	1.7	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|55376751|ref|YP_134602.1|	-	0.02	14.6	0.0	0.054	13.3	0.0	1.8	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
ADH_zinc_N	PF00107.21	gi|55376751|ref|YP_134602.1|	-	0.088	12.3	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
Amidohydro_4	PF13147.1	gi|55376752|ref|YP_134603.1|	-	2.7e-30	106.3	3.3	3.1e-30	106.1	2.3	1.1	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|55376752|ref|YP_134603.1|	-	4.1e-10	39.3	0.1	1.1e-09	37.9	0.1	1.8	1	0	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|55376752|ref|YP_134603.1|	-	0.0034	16.6	3.5	0.025	13.8	0.8	2.6	2	1	1	3	3	3	1	Amidohydrolase	family
Amidohydro_1	PF01979.15	gi|55376752|ref|YP_134603.1|	-	0.035	13.7	0.6	0.26	10.9	0.0	2.3	1	1	0	2	2	2	0	Amidohydrolase	family
DUF3040	PF11239.3	gi|55376753|ref|YP_134604.1|	-	0.0046	16.9	0.1	0.0099	15.9	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3040)
HTH_20	PF12840.2	gi|55376753|ref|YP_134604.1|	-	0.024	14.4	0.1	0.059	13.1	0.0	1.6	1	1	1	2	2	2	0	Helix-turn-helix	domain
DUF4191	PF13829.1	gi|55376753|ref|YP_134604.1|	-	0.025	13.6	0.0	0.35	9.9	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4191)
Mrr_N	PF14338.1	gi|55376753|ref|YP_134604.1|	-	0.032	14.3	0.0	0.077	13.0	0.0	1.7	1	1	0	1	1	1	0	Mrr	N-terminal	domain
HTH_11	PF08279.7	gi|55376753|ref|YP_134604.1|	-	0.052	13.1	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
DUF2892	PF11127.3	gi|55376753|ref|YP_134604.1|	-	0.92	9.3	6.1	1.7	8.5	4.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
HTH_45	PF14947.1	gi|55376754|ref|YP_134605.1|	-	1.4e-05	24.7	0.0	1.8e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.2	gi|55376754|ref|YP_134605.1|	-	7.9e-05	22.3	0.3	0.0001	22.0	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|55376754|ref|YP_134605.1|	-	0.00013	22.2	0.2	0.00016	21.9	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|55376754|ref|YP_134605.1|	-	0.001	18.7	0.0	0.0016	18.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Replic_Relax	PF13814.1	gi|55376754|ref|YP_134605.1|	-	0.0063	16.3	0.0	0.0082	16.0	0.0	1.2	1	0	0	1	1	1	1	Replication-relaxation
MarR_2	PF12802.2	gi|55376754|ref|YP_134605.1|	-	0.01	15.5	0.5	0.014	15.0	0.3	1.2	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.1	gi|55376754|ref|YP_134605.1|	-	0.022	14.5	0.0	0.026	14.2	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF4364	PF14277.1	gi|55376754|ref|YP_134605.1|	-	0.033	13.8	0.0	0.042	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.14	gi|55376754|ref|YP_134605.1|	-	0.045	13.4	0.1	0.1	12.3	0.0	1.6	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.14	gi|55376754|ref|YP_134605.1|	-	0.092	12.6	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Ribosomal_L21e	PF01157.13	gi|55376754|ref|YP_134605.1|	-	0.11	12.2	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L21e
HTH_34	PF13601.1	gi|55376754|ref|YP_134605.1|	-	0.11	12.4	0.0	0.13	12.2	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
E2F_TDP	PF02319.15	gi|55376754|ref|YP_134605.1|	-	0.12	11.9	0.3	0.15	11.6	0.2	1.4	1	1	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
CARDB	PF07705.6	gi|55376755|ref|YP_134606.1|	-	2.9e-14	52.9	24.5	0.0048	16.9	0.2	4.6	5	0	0	5	5	5	4	CARDB
Fn3-like	PF14310.1	gi|55376755|ref|YP_134606.1|	-	0.00023	21.0	9.2	0.74	9.7	0.0	5.6	5	3	1	6	6	6	2	Fibronectin	type	III-like	domain
DUF3872	PF12988.2	gi|55376755|ref|YP_134606.1|	-	0.0008	18.9	0.2	0.25	10.8	0.0	3.1	3	0	0	3	3	3	1	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3872)
Transglut_C	PF00927.17	gi|55376755|ref|YP_134606.1|	-	0.0021	18.0	2.8	1.1	9.3	0.1	3.8	3	0	0	3	3	3	1	Transglutaminase	family,	C-terminal	ig	like	domain
BsuPI	PF12690.2	gi|55376755|ref|YP_134606.1|	-	0.0056	16.3	2.8	3.7	7.3	0.0	4.7	5	0	0	5	5	5	1	Intracellular	proteinase	inhibitor
FixG_C	PF11614.3	gi|55376755|ref|YP_134606.1|	-	0.022	14.8	11.4	3	7.9	0.8	4.7	3	2	2	5	5	5	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
TMEM171	PF15471.1	gi|55376755|ref|YP_134606.1|	-	0.039	12.7	0.3	0.079	11.7	0.2	1.5	1	0	0	1	1	1	0	Transmembrane	protein	family	171
A2M	PF00207.17	gi|55376755|ref|YP_134606.1|	-	0.078	12.5	2.6	1.9	8.1	0.1	3.3	4	0	0	4	4	4	0	Alpha-2-macroglobulin	family
Glycos_transf_2	PF00535.21	gi|55376756|ref|YP_134607.1|	-	0.0018	17.9	0.0	0.0024	17.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
BTG	PF07742.7	gi|55376756|ref|YP_134607.1|	-	0.0081	15.6	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	BTG	family
DUF1616	PF07760.6	gi|55376757|ref|YP_134608.1|	-	1.2e-76	257.5	1.4	1.4e-76	257.4	1.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Glycos_transf_1	PF00534.15	gi|55376758|ref|YP_134609.1|	-	2.5e-34	118.1	0.0	4.3e-34	117.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|55376758|ref|YP_134609.1|	-	2.7e-22	79.3	0.0	7e-22	78.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|55376758|ref|YP_134609.1|	-	5.6e-18	65.2	0.0	8.7e-18	64.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|55376758|ref|YP_134609.1|	-	7.5e-18	65.1	0.3	4.5e-17	62.6	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|55376758|ref|YP_134609.1|	-	1e-06	28.9	0.0	2.4e-06	27.7	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|55376758|ref|YP_134609.1|	-	0.04	13.7	0.0	0.061	13.1	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Glycos_transf_1	PF00534.15	gi|55376759|ref|YP_134610.1|	-	5.6e-32	110.5	0.0	8.3e-32	109.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|55376759|ref|YP_134610.1|	-	2.5e-22	79.7	2.2	2.5e-22	79.7	0.6	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|55376759|ref|YP_134610.1|	-	4.7e-18	65.5	0.3	7.4e-18	64.8	0.2	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|55376759|ref|YP_134610.1|	-	1.3e-16	61.0	0.0	4.7e-16	59.1	0.0	1.9	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|55376759|ref|YP_134610.1|	-	1.9e-09	37.6	0.3	4.3e-09	36.5	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|55376759|ref|YP_134610.1|	-	1.6e-07	31.2	0.0	3.3e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.6	gi|55376759|ref|YP_134610.1|	-	3e-05	23.6	0.1	0.011	15.3	0.0	2.3	1	1	1	2	2	2	2	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.15	gi|55376760|ref|YP_134611.1|	-	1.3e-37	128.8	0.0	2.3e-36	124.7	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|55376760|ref|YP_134611.1|	-	2e-21	76.5	0.1	1.5e-20	73.7	0.1	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|55376760|ref|YP_134611.1|	-	1.8e-09	37.7	0.1	4.4e-09	36.5	0.1	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|55376760|ref|YP_134611.1|	-	5.1e-09	36.4	0.5	2.2e-08	34.3	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|55376760|ref|YP_134611.1|	-	8.7e-07	28.8	0.0	1.6e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.1	gi|55376760|ref|YP_134611.1|	-	0.0034	17.2	0.0	0.0051	16.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Sulfatase	PF00884.18	gi|55376763|ref|YP_134614.1|	-	5.3e-43	147.3	0.2	6.8e-43	147.0	0.1	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|55376763|ref|YP_134614.1|	-	1e-05	25.0	2.7	0.014	14.7	0.2	2.5	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.13	gi|55376763|ref|YP_134614.1|	-	0.076	12.3	0.5	0.36	10.1	0.3	2.0	2	0	0	2	2	2	0	Metalloenzyme	superfamily
Sulfatase	PF00884.18	gi|55376764|ref|YP_134615.1|	-	2.6e-40	138.5	0.1	3.3e-40	138.1	0.0	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.17	gi|55376764|ref|YP_134615.1|	-	3e-15	56.4	1.1	1.1e-08	34.8	0.2	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|55376764|ref|YP_134615.1|	-	0.0056	15.1	0.0	0.0082	14.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.13	gi|55376764|ref|YP_134615.1|	-	0.1	11.9	0.0	0.19	11.0	0.0	1.4	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Glycos_transf_2	PF00535.21	gi|55376765|ref|YP_134616.1|	-	1.4e-30	106.2	0.0	2.1e-30	105.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|55376765|ref|YP_134616.1|	-	1.6e-20	73.9	0.1	2.3e-20	73.4	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|55376765|ref|YP_134616.1|	-	4.1e-10	39.2	0.0	7e-10	38.4	0.0	1.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
TPR_2	PF07719.12	gi|55376765|ref|YP_134616.1|	-	0.00038	20.1	1.2	0.0008	19.1	0.8	1.5	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|55376765|ref|YP_134616.1|	-	0.0062	17.1	2.4	0.012	16.3	1.7	1.4	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_11	PF13414.1	gi|55376765|ref|YP_134616.1|	-	0.038	13.6	0.6	0.065	12.8	0.4	1.4	1	0	0	1	1	1	0	TPR	repeat
Rhamno_transf	PF11316.3	gi|55376765|ref|YP_134616.1|	-	0.041	13.0	0.0	0.061	12.5	0.0	1.2	1	0	0	1	1	1	0	Putative	rhamnosyl	transferase
TPR_8	PF13181.1	gi|55376765|ref|YP_134616.1|	-	0.053	13.3	1.7	0.077	12.8	0.4	1.8	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Sulfatase	PF00884.18	gi|55376766|ref|YP_134617.1|	-	2e-17	63.3	0.8	2e-16	60.0	0.0	2.1	1	1	1	2	2	2	1	Sulfatase
Phosphodiest	PF01663.17	gi|55376766|ref|YP_134617.1|	-	0.00065	19.1	0.4	0.93	8.7	0.0	2.2	1	1	1	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.12	gi|55376766|ref|YP_134617.1|	-	0.19	10.1	0.0	0.21	9.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
CBM_6	PF03422.10	gi|55376769|ref|YP_134620.1|	-	9.6e-52	174.3	21.6	1.5e-19	70.4	2.2	4.1	3	1	0	3	3	3	3	Carbohydrate	binding	module	(family	6)
PRCC	PF10253.4	gi|55376769|ref|YP_134620.1|	-	3.3	8.3	6.9	8.1	7.0	2.2	2.3	2	0	0	2	2	2	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
Polysacc_synt	PF01943.12	gi|55376772|ref|YP_134623.1|	-	4.8e-28	98.1	7.9	4.8e-28	98.1	5.5	2.8	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.1	gi|55376772|ref|YP_134623.1|	-	2.3e-16	60.0	13.9	2.3e-16	60.0	9.6	2.7	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.1	gi|55376772|ref|YP_134623.1|	-	1.2e-12	47.8	18.0	1.2e-12	47.8	12.5	3.8	4	2	2	6	6	6	1	Polysaccharide	biosynthesis	C-terminal	domain
FUSC-like	PF12805.2	gi|55376772|ref|YP_134623.1|	-	0.65	8.8	5.1	0.75	8.6	2.0	2.1	2	0	0	2	2	2	0	FUSC-like	inner	membrane	protein	yccS
GFO_IDH_MocA	PF01408.17	gi|55376773|ref|YP_134624.1|	-	1.9e-21	76.7	0.0	3.4e-21	75.9	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
CoA_binding_2	PF13380.1	gi|55376773|ref|YP_134624.1|	-	0.021	14.9	0.0	0.053	13.6	0.0	1.7	1	1	0	1	1	1	0	CoA	binding	domain
DUF1349	PF07081.6	gi|55376773|ref|YP_134624.1|	-	0.086	12.1	0.1	0.16	11.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1349)
SepZ	PF06066.6	gi|55376774|ref|YP_134625.1|	-	0.076	13.0	0.0	0.086	12.8	0.0	1.1	1	0	0	1	1	1	0	SepZ
Glyco_tranf_2_3	PF13641.1	gi|55376775|ref|YP_134626.1|	-	1e-11	45.1	0.5	4.1e-11	43.1	0.4	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|55376775|ref|YP_134626.1|	-	7.9e-11	41.9	3.1	2.2e-08	33.9	0.0	2.6	2	1	1	3	3	3	2	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.4	gi|55376775|ref|YP_134626.1|	-	6.8e-08	31.9	0.2	0.0058	15.7	0.0	2.2	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|55376775|ref|YP_134626.1|	-	1.7e-07	31.1	0.1	2.4e-07	30.6	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.9	gi|55376775|ref|YP_134626.1|	-	2.4e-05	23.7	2.6	4.4e-05	22.8	1.8	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Tox-HNH-HHH	PF15637.1	gi|55376775|ref|YP_134626.1|	-	0.16	11.7	0.5	3.3	7.5	0.0	2.5	2	1	0	2	2	2	0	HNH/Endo	VII	superfamily	nuclease	toxin	with	a	HHH	motif
NTP_transferase	PF00483.18	gi|55376776|ref|YP_134627.1|	-	7.4e-40	136.8	0.0	8.2e-40	136.6	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|55376776|ref|YP_134627.1|	-	3.5e-15	56.4	0.0	4.4e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|55376776|ref|YP_134627.1|	-	1.2e-06	28.2	0.0	2.6e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.21	gi|55376776|ref|YP_134627.1|	-	0.071	12.7	0.0	0.095	12.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
IncA	PF04156.9	gi|55376779|ref|YP_134630.1|	-	1.2	8.7	6.6	0.34	10.4	2.4	1.6	2	0	0	2	2	2	0	IncA	protein
GAF_2	PF13185.1	gi|55376781|ref|YP_134632.1|	-	6e-38	130.6	1.5	1.9e-14	54.4	0.0	4.4	4	0	0	4	4	4	4	GAF	domain
GAF_3	PF13492.1	gi|55376781|ref|YP_134632.1|	-	1.6e-24	86.4	0.0	2.5e-07	30.8	0.0	4.4	4	0	0	4	4	4	4	GAF	domain
GAF	PF01590.21	gi|55376781|ref|YP_134632.1|	-	1.5e-20	73.8	0.1	2.2e-06	27.8	0.0	4.1	4	0	0	4	4	4	3	GAF	domain
Response_reg	PF00072.19	gi|55376781|ref|YP_134632.1|	-	4.6e-19	68.4	0.0	1.6e-18	66.7	0.0	2.0	2	0	0	2	2	1	1	Response	regulator	receiver	domain
HTH_10	PF04967.7	gi|55376781|ref|YP_134632.1|	-	1.8e-16	59.4	0.0	7.1e-16	57.5	0.0	2.1	2	0	0	2	2	2	1	HTH	DNA	binding	domain
OKR_DC_1_N	PF03709.10	gi|55376781|ref|YP_134632.1|	-	6.9e-07	29.3	0.3	1.4e-05	25.1	0.0	3.1	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Sigma70_r4	PF04545.11	gi|55376781|ref|YP_134632.1|	-	0.00035	19.8	0.0	0.0018	17.5	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.7	gi|55376781|ref|YP_134632.1|	-	0.0017	17.7	0.2	0.17	11.3	0.0	3.6	2	1	0	2	2	2	1	Sigma-70,	region	4
HTH_5	PF01022.15	gi|55376781|ref|YP_134632.1|	-	0.0029	17.2	0.0	0.0075	15.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.14	gi|55376781|ref|YP_134632.1|	-	0.0051	16.0	0.0	0.028	13.7	0.0	2.3	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_20	PF12840.2	gi|55376781|ref|YP_134632.1|	-	0.0052	16.5	0.1	0.044	13.6	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
DUF1492	PF07374.6	gi|55376781|ref|YP_134632.1|	-	0.36	10.9	1.8	26	4.9	0.0	3.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1492)
DUF4250	PF14056.1	gi|55376782|ref|YP_134633.1|	-	0.15	11.7	0.1	0.33	10.7	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
AAA_13	PF13166.1	gi|55376783|ref|YP_134634.1|	-	3.7e-08	32.3	34.1	1.5e-05	23.7	23.7	3.3	1	1	0	1	1	1	1	AAA	domain
IncA	PF04156.9	gi|55376783|ref|YP_134634.1|	-	4.5e-07	29.6	62.9	0.0012	18.5	6.4	4.2	1	1	3	4	4	4	2	IncA	protein
FliJ	PF02050.11	gi|55376783|ref|YP_134634.1|	-	2.3e-06	27.6	39.0	0.00044	20.3	5.3	5.6	4	2	2	6	6	6	3	Flagellar	FliJ	protein
CENP-F_leu_zip	PF10473.4	gi|55376783|ref|YP_134634.1|	-	3.8e-06	26.8	56.2	0.0081	16.0	6.1	4.9	2	2	2	4	4	4	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
SMC_N	PF02463.14	gi|55376783|ref|YP_134634.1|	-	2.1e-05	23.8	1.3	0.016	14.4	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
DUF869	PF05911.6	gi|55376783|ref|YP_134634.1|	-	6.3e-05	21.4	26.9	9.1e-05	20.8	18.6	1.2	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
WEMBL	PF05701.6	gi|55376783|ref|YP_134634.1|	-	7.1e-05	21.4	50.1	0.011	14.2	10.9	3.1	2	1	1	3	3	3	2	Weak	chloroplast	movement	under	blue	light
AAA_23	PF13476.1	gi|55376783|ref|YP_134634.1|	-	7.7e-05	23.1	38.1	4.3	7.5	26.4	4.0	1	1	0	1	1	1	0	AAA	domain
Cast	PF10174.4	gi|55376783|ref|YP_134634.1|	-	8.7e-05	20.7	59.3	0.012	13.7	18.2	2.1	1	1	0	2	2	2	2	RIM-binding	protein	of	the	cytomatrix	active	zone
AAA_21	PF13304.1	gi|55376783|ref|YP_134634.1|	-	0.00012	22.1	0.0	0.0036	17.3	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
Atg14	PF10186.4	gi|55376783|ref|YP_134634.1|	-	0.00013	20.9	10.5	0.00013	20.9	7.3	3.5	2	2	1	3	3	3	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF3584	PF12128.3	gi|55376783|ref|YP_134634.1|	-	0.00056	17.4	51.9	0.00058	17.3	33.5	2.3	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3584)
Spc7	PF08317.6	gi|55376783|ref|YP_134634.1|	-	0.0012	17.6	47.2	0.018	13.7	3.6	3.2	1	1	1	3	3	3	3	Spc7	kinetochore	protein
Laminin_II	PF06009.7	gi|55376783|ref|YP_134634.1|	-	0.0018	18.0	33.7	0.42	10.3	5.5	4.2	1	1	3	4	4	4	3	Laminin	Domain	II
DUF1664	PF07889.7	gi|55376783|ref|YP_134634.1|	-	0.0037	17.0	27.5	0.099	12.4	1.5	4.6	3	1	1	4	4	4	1	Protein	of	unknown	function	(DUF1664)
GAS	PF13851.1	gi|55376783|ref|YP_134634.1|	-	0.0042	16.3	44.5	0.036	13.2	4.6	4.1	2	2	1	3	3	3	3	Growth-arrest	specific	micro-tubule	binding
Tropomyosin_1	PF12718.2	gi|55376783|ref|YP_134634.1|	-	0.0054	16.5	60.2	0.23	11.3	15.1	4.3	2	2	1	3	3	3	3	Tropomyosin	like
YscO	PF07321.7	gi|55376783|ref|YP_134634.1|	-	0.01	15.6	12.6	0.01	15.6	8.7	4.7	2	2	1	4	4	4	0	Type	III	secretion	protein	YscO
Filament	PF00038.16	gi|55376783|ref|YP_134634.1|	-	0.011	15.2	5.7	0.011	15.2	4.0	4.2	1	1	1	3	3	3	0	Intermediate	filament	protein
NPV_P10	PF05531.7	gi|55376783|ref|YP_134634.1|	-	0.012	15.7	27.4	0.24	11.6	1.3	6.0	3	1	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
PspA_IM30	PF04012.7	gi|55376783|ref|YP_134634.1|	-	0.014	14.8	52.8	0.69	9.2	15.7	3.7	2	2	1	3	3	3	0	PspA/IM30	family
Baculo_PEP_C	PF04513.7	gi|55376783|ref|YP_134634.1|	-	0.021	14.6	24.6	0.075	12.8	0.6	4.4	2	2	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
TPR_MLP1_2	PF07926.7	gi|55376783|ref|YP_134634.1|	-	0.058	13.1	51.4	0.2	11.4	9.8	5.3	1	1	4	5	5	5	0	TPR/MLP1/MLP2-like	protein
FlaC_arch	PF05377.6	gi|55376783|ref|YP_134634.1|	-	0.07	13.0	26.2	14	5.6	0.1	7.3	3	2	5	8	8	8	0	Flagella	accessory	protein	C	(FlaC)
Med14	PF08638.6	gi|55376783|ref|YP_134634.1|	-	0.075	12.2	1.8	0.31	10.2	0.0	2.7	3	1	0	4	4	3	0	Mediator	complex	subunit	MED14
AAA_27	PF13514.1	gi|55376783|ref|YP_134634.1|	-	0.085	10.5	55.7	1.1	6.8	20.7	2.3	1	1	1	2	2	2	0	AAA	domain
Seryl_tRNA_N	PF02403.17	gi|55376783|ref|YP_134634.1|	-	0.085	12.8	46.0	0.079	12.9	5.2	4.9	2	2	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
MscS_porin	PF12795.2	gi|55376783|ref|YP_134634.1|	-	0.13	11.5	59.7	0.084	12.1	14.4	3.9	2	2	1	3	3	3	0	Mechanosensitive	ion	channel	porin	domain
Reo_sigmaC	PF04582.7	gi|55376783|ref|YP_134634.1|	-	0.16	11.0	22.0	0.034	13.3	4.3	3.6	1	1	3	4	4	4	0	Reovirus	sigma	C	capsid	protein
COG2	PF06148.6	gi|55376783|ref|YP_134634.1|	-	0.18	11.6	35.8	0.62	9.9	1.4	5.5	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Prefoldin_2	PF01920.15	gi|55376783|ref|YP_134634.1|	-	0.67	9.7	51.1	1.9	8.2	2.9	7.8	3	3	4	7	7	7	0	Prefoldin	subunit
HALZ	PF02183.13	gi|55376783|ref|YP_134634.1|	-	0.71	9.6	15.9	3.9	7.2	0.5	5.5	5	0	0	5	5	5	0	Homeobox	associated	leucine	zipper
ISG65-75	PF11727.3	gi|55376783|ref|YP_134634.1|	-	1.2	8.1	28.4	0.021	13.9	5.0	3.4	2	2	1	3	3	3	0	Invariant	surface	glycoprotein
ATG16	PF08614.6	gi|55376783|ref|YP_134634.1|	-	1.2	8.9	53.0	2.2	8.0	13.8	4.4	1	1	1	3	3	3	0	Autophagy	protein	16	(ATG16)
HR1	PF02185.11	gi|55376783|ref|YP_134634.1|	-	1.3	8.7	42.0	0.45	10.2	3.0	5.8	5	2	0	5	5	5	0	Hr1	repeat
TMF_DNA_bd	PF12329.3	gi|55376783|ref|YP_134634.1|	-	1.7	8.4	57.1	0.79	9.5	3.6	6.6	3	2	1	5	5	5	0	TATA	element	modulatory	factor	1	DNA	binding
Syntaxin_2	PF14523.1	gi|55376783|ref|YP_134634.1|	-	1.7	8.6	28.5	7.1	6.7	2.7	4.1	2	2	2	4	4	4	0	Syntaxin-like	protein
DUF4200	PF13863.1	gi|55376783|ref|YP_134634.1|	-	2.1	8.3	49.4	0.79	9.6	8.8	5.0	3	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4200)
TMF_TATA_bd	PF12325.3	gi|55376783|ref|YP_134634.1|	-	2.7	7.7	58.5	0.057	13.1	4.9	6.0	2	2	3	6	6	5	0	TATA	element	modulatory	factor	1	TATA	binding
APG6	PF04111.7	gi|55376783|ref|YP_134634.1|	-	3.8	6.4	52.0	0.28	10.1	11.3	4.0	1	1	3	4	4	4	0	Autophagy	protein	Apg6
KaiC	PF06745.8	gi|55376783|ref|YP_134634.1|	-	5.2	6.1	11.0	0.88	8.6	1.0	2.7	2	1	1	3	3	3	0	KaiC
PEARLI-4	PF05278.7	gi|55376783|ref|YP_134634.1|	-	5.5	6.2	31.2	0.55	9.5	0.5	4.1	2	2	2	4	4	4	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
DUF2353	PF09789.4	gi|55376783|ref|YP_134634.1|	-	5.8	6.0	43.9	77	2.3	22.7	3.5	1	1	1	2	2	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
MCPsignal	PF00015.16	gi|55376783|ref|YP_134634.1|	-	5.9	6.3	28.1	1.9	7.9	7.6	3.3	1	1	2	3	3	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Snapin_Pallidin	PF14712.1	gi|55376783|ref|YP_134634.1|	-	8.5	6.7	32.4	2.8	8.3	0.9	4.7	3	1	2	5	5	5	0	Snapin/Pallidin
DUF904	PF06005.7	gi|55376783|ref|YP_134634.1|	-	9.5	6.6	36.8	0.58	10.4	5.7	5.2	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF904)
zinc_ribbon_2	PF13240.1	gi|55376784|ref|YP_134635.1|	-	0.47	10.0	2.4	0.4	10.2	0.3	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
NAD_synthase	PF02540.12	gi|55376785|ref|YP_134636.1|	-	1.2e-31	109.4	0.0	1.4e-31	109.2	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
S-methyl_trans	PF02574.11	gi|55376785|ref|YP_134636.1|	-	0.022	14.0	0.0	0.031	13.5	0.0	1.1	1	0	0	1	1	1	0	Homocysteine	S-methyltransferase
HTH_23	PF13384.1	gi|55376785|ref|YP_134636.1|	-	0.083	12.5	0.0	0.19	11.4	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
Ribosomal_S17e	PF00833.13	gi|55376786|ref|YP_134637.1|	-	0.0093	15.7	0.0	0.0096	15.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	S17
DegS	PF05384.6	gi|55376786|ref|YP_134637.1|	-	0.099	11.8	0.1	0.1	11.7	0.0	1.0	1	0	0	1	1	1	0	Sensor	protein	DegS
Amidohydro_1	PF01979.15	gi|55376787|ref|YP_134638.1|	-	3.8e-50	171.4	0.2	4.8e-50	171.1	0.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|55376787|ref|YP_134638.1|	-	3.2e-14	53.6	1.1	4.9e-13	49.7	0.7	2.3	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|55376787|ref|YP_134638.1|	-	4.2e-05	23.2	0.6	0.0002	21.1	0.0	2.5	3	0	0	3	3	3	1	Amidohydrolase
A_deaminase	PF00962.17	gi|55376787|ref|YP_134638.1|	-	0.017	14.0	0.0	0.029	13.2	0.0	1.3	1	0	0	1	1	1	0	Adenosine/AMP	deaminase
DisA_N	PF02457.11	gi|55376787|ref|YP_134638.1|	-	0.058	12.5	0.0	0.16	11.1	0.0	1.7	1	0	0	1	1	1	0	DisA	bacterial	checkpoint	controller	nucleotide-binding
BPD_transp_1	PF00528.17	gi|55376788|ref|YP_134639.1|	-	2.5e-16	59.7	6.0	2.5e-16	59.7	4.2	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
AAA_21	PF13304.1	gi|55376789|ref|YP_134640.1|	-	0.14	12.0	0.0	0.19	11.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
Phosphonate-bd	PF12974.2	gi|55376790|ref|YP_134641.1|	-	6.2e-54	182.9	4.2	7.4e-54	182.7	2.9	1.0	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_3	PF00497.15	gi|55376790|ref|YP_134641.1|	-	0.019	14.1	0.0	0.084	12.1	0.0	1.9	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	proteins,	family	3
DUF1543	PF07566.7	gi|55376790|ref|YP_134641.1|	-	0.089	12.3	0.1	16	5.1	0.0	2.6	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1543)
Varsurf_PPLC	PF03490.8	gi|55376790|ref|YP_134641.1|	-	0.14	11.8	2.3	0.16	11.6	0.1	2.3	3	0	0	3	3	3	0	Variant-surface-glycoprotein	phospholipase	C
TAT_signal	PF10518.4	gi|55376790|ref|YP_134641.1|	-	1	9.5	4.1	0.58	10.3	0.8	2.3	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Ribonuc_L-PSP	PF01042.16	gi|55376791|ref|YP_134642.1|	-	7.2e-39	132.2	0.1	8e-39	132.1	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
NTP_transf_3	PF12804.2	gi|55376792|ref|YP_134643.1|	-	2.2e-37	128.6	0.2	2.7e-37	128.3	0.2	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|55376792|ref|YP_134643.1|	-	0.003	17.1	0.3	0.0043	16.6	0.2	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
TusA	PF01206.12	gi|55376794|ref|YP_134645.1|	-	1e-14	53.8	0.0	1.1e-14	53.7	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|55376794|ref|YP_134645.1|	-	0.015	14.8	0.1	0.018	14.6	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
DUF1930	PF09122.5	gi|55376794|ref|YP_134645.1|	-	0.14	11.9	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1930)
AIRS_C	PF02769.17	gi|55376795|ref|YP_134646.1|	-	9.8e-18	64.6	0.0	1.5e-17	64.0	0.0	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
XdhC_C	PF13478.1	gi|55376796|ref|YP_134647.1|	-	1e-34	119.7	1.7	1.1e-32	113.1	0.1	2.2	2	0	0	2	2	2	2	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.11	gi|55376796|ref|YP_134647.1|	-	8.3e-22	76.5	2.0	2.6e-21	75.0	0.1	2.8	2	0	0	2	2	2	1	XdhC	and	CoxI	family
Pyr_redox	PF00070.22	gi|55376796|ref|YP_134647.1|	-	0.0016	18.8	1.8	0.0053	17.1	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.16	gi|55376796|ref|YP_134647.1|	-	0.0054	16.5	1.3	0.014	15.2	0.1	2.1	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|55376796|ref|YP_134647.1|	-	0.0055	16.6	1.0	2.1	8.3	0.1	2.6	2	0	0	2	2	2	2	TrkA-N	domain
3HCDH_N	PF02737.13	gi|55376796|ref|YP_134647.1|	-	0.011	15.4	1.9	0.34	10.5	0.2	2.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DRTGG	PF07085.7	gi|55376796|ref|YP_134647.1|	-	0.037	13.6	0.0	0.45	10.1	0.0	2.5	2	0	0	2	2	2	0	DRTGG	domain
2-Hacid_dh_C	PF02826.14	gi|55376796|ref|YP_134647.1|	-	0.07	12.2	0.6	5.7	6.0	0.0	2.6	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DsrH	PF04077.7	gi|55376797|ref|YP_134648.1|	-	3e-05	23.6	0.5	0.00049	19.7	0.3	2.0	1	1	0	1	1	1	1	DsrH	like	protein
SurA_N	PF09312.6	gi|55376797|ref|YP_134648.1|	-	0.0072	16.1	0.1	0.0088	15.8	0.1	1.1	1	0	0	1	1	1	1	SurA	N-terminal	domain
DrsE	PF02635.10	gi|55376798|ref|YP_134649.1|	-	2.2e-14	53.5	0.1	2.4e-14	53.4	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE	PF02635.10	gi|55376799|ref|YP_134650.1|	-	1.9e-26	92.4	0.0	2.2e-26	92.3	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Ald_Xan_dh_C2	PF02738.13	gi|55376800|ref|YP_134651.1|	-	8.7e-131	436.9	0.0	1.1e-130	436.5	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|55376800|ref|YP_134651.1|	-	1.6e-11	44.2	0.1	3.9e-11	43.0	0.0	1.7	2	0	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF1846	PF08903.6	gi|55376800|ref|YP_134651.1|	-	0.053	11.9	0.0	0.077	11.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1846)
Fer2_2	PF01799.15	gi|55376801|ref|YP_134652.1|	-	1.2e-36	124.4	0.6	1.8e-35	120.6	0.0	2.2	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|55376801|ref|YP_134652.1|	-	1.7e-09	37.2	0.9	1.7e-09	37.2	0.6	2.9	3	1	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|55376801|ref|YP_134652.1|	-	1.1e-05	25.1	0.6	3.5e-05	23.5	0.2	1.9	2	1	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|55376801|ref|YP_134652.1|	-	3.4e-05	23.5	1.1	0.00015	21.4	0.8	2.1	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.13	gi|55376802|ref|YP_134653.1|	-	1.2e-131	439.7	0.6	1.7e-131	439.2	0.4	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|55376802|ref|YP_134653.1|	-	1.6e-24	86.0	1.1	3.1e-24	85.2	0.8	1.5	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Fer2_2	PF01799.15	gi|55376803|ref|YP_134654.1|	-	4.7e-31	106.5	0.0	9e-31	105.6	0.0	1.5	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|55376803|ref|YP_134654.1|	-	1.2e-05	25.0	1.1	1.2e-05	25.0	0.8	3.1	3	1	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|55376803|ref|YP_134654.1|	-	0.0012	18.6	0.5	0.0022	17.7	0.4	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DUF4186	PF13811.1	gi|55376803|ref|YP_134654.1|	-	0.15	11.7	0.8	0.23	11.1	0.6	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4186)
Peptidase_M20	PF01546.23	gi|55376804|ref|YP_134655.1|	-	1e-24	87.1	0.4	1.5e-24	86.5	0.3	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|55376804|ref|YP_134655.1|	-	1.2e-07	31.4	0.0	2.5e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|55376804|ref|YP_134655.1|	-	0.0027	17.4	0.0	0.0045	16.7	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
D-aminoacyl_C	PF07908.7	gi|55376805|ref|YP_134656.1|	-	4.4e-16	57.9	0.4	1.4e-15	56.2	0.0	2.1	2	0	0	2	2	2	1	D-aminoacylase,	C-terminal	region
Amidohydro_5	PF13594.1	gi|55376805|ref|YP_134656.1|	-	4.5e-13	48.7	0.0	2.3e-12	46.5	0.0	2.2	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|55376805|ref|YP_134656.1|	-	8.8e-11	42.3	9.6	6.3e-08	32.9	6.7	2.9	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|55376805|ref|YP_134656.1|	-	7.8e-09	35.2	1.7	5.1e-08	32.5	1.2	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.15	gi|55376805|ref|YP_134656.1|	-	2e-07	30.9	0.0	0.00027	20.7	0.0	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
Bmp	PF02608.9	gi|55376806|ref|YP_134657.1|	-	1.2e-40	139.1	0.0	1.5e-40	138.8	0.0	1.0	1	0	0	1	1	1	1	Basic	membrane	protein
TAT_signal	PF10518.4	gi|55376806|ref|YP_134657.1|	-	0.023	14.6	2.3	0.056	13.4	1.6	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Bmp	PF02608.9	gi|55376807|ref|YP_134658.1|	-	8.1e-40	136.4	0.0	1e-39	136.0	0.0	1.0	1	0	0	1	1	1	1	Basic	membrane	protein
TAT_signal	PF10518.4	gi|55376807|ref|YP_134658.1|	-	0.49	10.5	2.9	1.7	8.8	2.0	1.9	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.22	gi|55376808|ref|YP_134659.1|	-	3.9e-47	160.0	0.0	4.6e-29	101.4	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|55376808|ref|YP_134659.1|	-	1.4e-10	41.6	2.7	5.4e-09	36.4	0.5	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|55376808|ref|YP_134659.1|	-	6.2e-05	22.5	0.3	1.5	8.1	0.0	3.2	3	0	0	3	3	3	2	AAA-like	domain
AAA_15	PF13175.1	gi|55376808|ref|YP_134659.1|	-	0.0013	17.9	0.1	0.46	9.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|55376808|ref|YP_134659.1|	-	0.0066	15.9	0.0	0.021	14.3	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|55376808|ref|YP_134659.1|	-	0.019	14.1	0.1	0.1	11.8	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|55376808|ref|YP_134659.1|	-	0.062	13.6	0.0	0.11	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|55376808|ref|YP_134659.1|	-	0.16	12.1	0.2	8.1	6.5	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|55376808|ref|YP_134659.1|	-	0.16	11.8	2.6	13	5.7	0.0	3.1	3	0	0	3	3	3	0	AAA	ATPase	domain
Bac_DnaA	PF00308.13	gi|55376808|ref|YP_134659.1|	-	0.18	11.4	0.0	0.31	10.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	dnaA	protein
AAA_13	PF13166.1	gi|55376808|ref|YP_134659.1|	-	0.38	9.1	0.0	0.6	8.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.11	gi|55376809|ref|YP_134660.1|	-	4.2e-39	134.1	31.3	4.2e-39	134.1	21.7	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|55376810|ref|YP_134661.1|	-	1.6e-38	132.2	31.2	1.6e-38	132.2	21.6	1.3	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Bac_luciferase	PF00296.15	gi|55376811|ref|YP_134662.1|	-	7.2e-54	182.9	0.1	9e-54	182.6	0.1	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Xan_ur_permease	PF00860.15	gi|55376812|ref|YP_134663.1|	-	3.6e-90	302.2	44.8	4.8e-90	301.8	31.1	1.2	1	0	0	1	1	1	1	Permease	family
PALP	PF00291.20	gi|55376813|ref|YP_134664.1|	-	5e-63	213.1	0.8	6.1e-63	212.8	0.5	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PK_C	PF02887.11	gi|55376813|ref|YP_134664.1|	-	0.016	14.7	1.3	1.4	8.4	0.0	2.4	2	0	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
Amidohydro_4	PF13147.1	gi|55376814|ref|YP_134665.1|	-	1.6e-23	84.1	6.1	1.6e-23	84.1	4.2	1.6	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_1	PF01979.15	gi|55376814|ref|YP_134665.1|	-	2.8e-12	46.9	0.0	4.5e-12	46.2	0.0	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|55376814|ref|YP_134665.1|	-	5.5e-10	38.9	2.2	5.5e-10	38.9	1.5	2.5	3	0	0	3	3	3	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|55376814|ref|YP_134665.1|	-	0.12	11.5	3.2	0.34	10.0	0.0	2.5	2	1	0	2	2	2	0	Amidohydrolase	family
Amidohydro_1	PF01979.15	gi|55376815|ref|YP_134666.1|	-	1.9e-37	129.6	1.1	2.6e-37	129.2	0.8	1.2	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|55376815|ref|YP_134666.1|	-	4.5e-14	52.0	0.1	3.7e-13	49.0	0.0	2.5	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|55376815|ref|YP_134666.1|	-	1.2e-11	44.5	4.1	2.8e-09	36.6	0.7	2.2	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|55376815|ref|YP_134666.1|	-	1.7e-10	41.3	0.0	6.4e-09	36.2	0.0	2.5	1	1	0	1	1	1	1	Amidohydrolase
HTH_IclR	PF09339.5	gi|55376816|ref|YP_134667.1|	-	0.06	12.9	1.5	0.66	9.6	0.6	2.9	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|55376816|ref|YP_134667.1|	-	0.095	12.8	0.2	0.26	11.4	0.2	1.8	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_DeoR	PF08220.7	gi|55376816|ref|YP_134667.1|	-	0.21	11.1	3.5	1.5	8.4	0.9	2.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
zinc_ribbon_2	PF13240.1	gi|55376817|ref|YP_134668.1|	-	0.15	11.6	0.7	0.34	10.4	0.1	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|55376818|ref|YP_134669.1|	-	0.1	12.4	0.6	0.18	11.6	0.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|55376818|ref|YP_134669.1|	-	0.26	10.5	2.8	1.2	8.4	0.4	2.1	1	1	2	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|55376818|ref|YP_134669.1|	-	1	9.2	4.6	4.2	7.2	3.2	2.0	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|55376818|ref|YP_134669.1|	-	3.6	7.6	6.9	1.3	9.0	0.5	2.8	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Peptidase_A24	PF01478.13	gi|55376819|ref|YP_134670.1|	-	0.054	13.6	9.0	0.12	12.4	6.3	1.8	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
AMP-binding	PF00501.23	gi|55376820|ref|YP_134671.1|	-	6.5e-51	173.0	0.1	9.3e-51	172.5	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
Hemerythrin	PF01814.18	gi|55376820|ref|YP_134671.1|	-	6e-11	42.6	7.8	6e-11	42.6	5.4	2.3	3	0	0	3	3	3	1	Hemerythrin	HHE	cation	binding	domain
Pyridox_ox_2	PF12900.2	gi|55376821|ref|YP_134672.1|	-	3.2e-13	49.6	0.0	3.8e-13	49.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_oxidase	PF01243.15	gi|55376821|ref|YP_134672.1|	-	8.7e-06	25.6	0.0	1.3e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
DUF756	PF05506.7	gi|55376821|ref|YP_134672.1|	-	0.1	13.0	0.0	0.2	12.1	0.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF756)
SHOCT	PF09851.4	gi|55376822|ref|YP_134673.1|	-	1.1e-05	24.6	0.7	1.5e-05	24.3	0.5	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
GvpG	PF05120.7	gi|55376822|ref|YP_134673.1|	-	0.0064	16.2	1.1	0.0096	15.7	0.8	1.3	1	0	0	1	1	1	1	Gas	vesicle	protein	G
DUF4381	PF14316.1	gi|55376822|ref|YP_134673.1|	-	0.009	16.1	0.1	0.011	15.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4381)
DUF1707	PF08044.6	gi|55376822|ref|YP_134673.1|	-	0.019	14.7	0.2	0.028	14.1	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1707)
DUF2231	PF09990.4	gi|55376822|ref|YP_134673.1|	-	0.036	14.4	0.1	0.045	14.1	0.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2231)
CSF-1	PF05337.6	gi|55376822|ref|YP_134673.1|	-	0.1	11.9	0.0	0.11	11.8	0.0	1.1	1	0	0	1	1	1	0	Macrophage	colony	stimulating	factor-1	(CSF-1)
Methyltransf_11	PF08241.7	gi|55376823|ref|YP_134674.1|	-	4.4e-14	52.7	0.0	7.3e-14	52.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376823|ref|YP_134674.1|	-	7.3e-12	45.2	0.1	9.3e-12	44.9	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376823|ref|YP_134674.1|	-	1.3e-10	41.5	0.0	2.2e-10	40.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|55376823|ref|YP_134674.1|	-	3.5e-09	37.2	0.1	5.4e-09	36.6	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|55376823|ref|YP_134674.1|	-	6.6e-09	35.5	0.0	7.6e-09	35.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|55376823|ref|YP_134674.1|	-	1.5e-08	34.6	0.0	2.3e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|55376823|ref|YP_134674.1|	-	3.2e-08	33.1	0.0	4.7e-08	32.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.7	gi|55376823|ref|YP_134674.1|	-	5.3e-08	33.2	0.0	7.9e-08	32.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|55376823|ref|YP_134674.1|	-	0.0017	17.7	0.0	0.0022	17.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
TehB	PF03848.9	gi|55376823|ref|YP_134674.1|	-	0.0022	17.1	0.0	0.0029	16.8	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
DUF938	PF06080.7	gi|55376823|ref|YP_134674.1|	-	0.0056	16.2	0.0	0.0079	15.7	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF938)
Methyltransf_24	PF13578.1	gi|55376823|ref|YP_134674.1|	-	0.0063	17.3	0.1	0.017	15.9	0.0	1.8	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|55376823|ref|YP_134674.1|	-	0.02	13.5	0.0	0.027	13.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Pox_MCEL	PF03291.11	gi|55376823|ref|YP_134674.1|	-	0.062	12.1	0.0	0.078	11.8	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
Methyltransf_4	PF02390.12	gi|55376823|ref|YP_134674.1|	-	0.14	11.1	0.0	0.21	10.6	0.0	1.4	1	0	0	1	1	1	0	Putative	methyltransferase
DUF3939	PF13075.1	gi|55376824|ref|YP_134675.1|	-	0.13	11.9	0.1	0.15	11.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3939)
DZR	PF12773.2	gi|55376824|ref|YP_134675.1|	-	0.22	11.3	12.3	17	5.2	8.5	2.8	1	1	0	1	1	1	0	Double	zinc	ribbon
RNHCP	PF12647.2	gi|55376824|ref|YP_134675.1|	-	2.2	8.1	8.7	0.18	11.6	1.8	2.1	2	1	0	2	2	2	0	RNHCP	domain
zf-MYND	PF01753.13	gi|55376824|ref|YP_134675.1|	-	6.2	6.7	7.8	36	4.3	3.1	2.7	2	1	0	2	2	2	0	MYND	finger
EamA	PF00892.15	gi|55376825|ref|YP_134676.1|	-	9.1e-35	119.4	28.0	8.1e-18	64.6	10.6	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|55376825|ref|YP_134676.1|	-	6.3e-09	36.0	2.5	6.3e-09	36.0	1.7	3.4	1	1	1	3	3	3	1	Multidrug	resistance	efflux	transporter
Leu_leader	PF08054.6	gi|55376825|ref|YP_134676.1|	-	0.12	11.9	0.4	0.48	10.1	0.3	2.1	1	0	0	1	1	1	0	Leucine	operon	leader	peptide
DUF914	PF06027.7	gi|55376825|ref|YP_134676.1|	-	0.49	9.1	7.1	8.1	5.1	5.2	2.0	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF914)
ATP1G1_PLM_MAT8	PF02038.11	gi|55376825|ref|YP_134676.1|	-	1.2	8.2	5.0	0.7	8.9	0.1	2.8	2	0	0	2	2	2	0	ATP1G1/PLM/MAT8	family
RPE65	PF03055.10	gi|55376826|ref|YP_134677.1|	-	1.5e-112	376.6	0.0	1.7e-112	376.5	0.0	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
Pyr_redox_2	PF07992.9	gi|55376827|ref|YP_134678.1|	-	9.6e-09	35.4	0.0	1.4e-08	34.8	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|55376827|ref|YP_134678.1|	-	1e-08	34.5	8.4	5.9e-05	22.1	0.4	3.5	2	1	2	4	4	4	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|55376827|ref|YP_134678.1|	-	1.2e-05	24.4	0.3	3e-05	23.0	0.2	1.6	1	0	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.17	gi|55376827|ref|YP_134678.1|	-	1.3e-05	24.2	2.0	4.7e-05	22.4	0.2	2.0	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|55376827|ref|YP_134678.1|	-	2.4e-05	23.5	0.7	5e-05	22.5	0.1	1.8	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|55376827|ref|YP_134678.1|	-	9.7e-05	21.6	1.2	9.7e-05	21.6	0.8	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|55376827|ref|YP_134678.1|	-	0.0005	20.0	0.1	0.0012	18.7	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|55376827|ref|YP_134678.1|	-	0.0007	18.1	0.1	0.0026	16.3	0.0	1.8	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.12	gi|55376827|ref|YP_134678.1|	-	0.0009	18.4	0.0	0.0019	17.3	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
Pyr_redox_3	PF13738.1	gi|55376827|ref|YP_134678.1|	-	0.002	18.2	1.6	1.3	9.0	0.1	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|55376827|ref|YP_134678.1|	-	0.094	12.3	0.1	0.26	10.9	0.0	1.9	2	1	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.1	gi|55376827|ref|YP_134678.1|	-	2.3	7.9	9.9	3.1	7.5	0.1	3.2	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FecCD	PF01032.13	gi|55376828|ref|YP_134679.1|	-	2.4e-89	299.2	37.3	3e-89	298.9	25.8	1.1	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.12	gi|55376828|ref|YP_134679.1|	-	0.00044	19.6	12.0	0.00044	19.6	8.3	2.5	2	1	1	3	3	3	1	ABC	3	transport	family
ABC_tran	PF00005.22	gi|55376829|ref|YP_134680.1|	-	1.8e-30	106.0	0.0	2.7e-30	105.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376829|ref|YP_134680.1|	-	5.5e-13	49.5	0.7	1e-05	25.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|55376829|ref|YP_134680.1|	-	2.1e-11	43.4	0.1	5.1e-06	25.8	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|55376829|ref|YP_134680.1|	-	1.1e-06	28.8	2.4	1.4e-05	25.2	1.6	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|55376829|ref|YP_134680.1|	-	6.3e-06	25.4	0.6	0.017	14.1	0.1	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|55376829|ref|YP_134680.1|	-	6.8e-06	25.5	0.0	1.3e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|55376829|ref|YP_134680.1|	-	1.6e-05	24.9	4.0	0.00011	22.2	2.8	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|55376829|ref|YP_134680.1|	-	3.1e-05	23.8	0.2	0.00017	21.5	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.4	gi|55376829|ref|YP_134680.1|	-	0.00012	20.8	0.6	0.29	9.6	0.0	2.8	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_17	PF13207.1	gi|55376829|ref|YP_134680.1|	-	0.00037	21.2	0.2	0.0012	19.6	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|55376829|ref|YP_134680.1|	-	0.00048	20.5	0.1	0.00086	19.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|55376829|ref|YP_134680.1|	-	0.0006	19.2	3.4	0.0067	15.8	2.3	2.3	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|55376829|ref|YP_134680.1|	-	0.0018	17.9	0.1	0.004	16.8	0.0	1.6	2	0	0	2	2	1	1	NACHT	domain
SRP54	PF00448.17	gi|55376829|ref|YP_134680.1|	-	0.0021	17.5	0.0	0.0037	16.7	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|55376829|ref|YP_134680.1|	-	0.0025	17.5	0.0	0.0073	16.0	0.0	1.8	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|55376829|ref|YP_134680.1|	-	0.0039	16.7	0.1	0.0091	15.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|55376829|ref|YP_134680.1|	-	0.005	16.5	0.0	0.0079	15.9	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_14	PF13173.1	gi|55376829|ref|YP_134680.1|	-	0.0051	16.7	0.0	0.012	15.5	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
DUF258	PF03193.11	gi|55376829|ref|YP_134680.1|	-	0.0055	15.8	0.3	0.0095	15.1	0.0	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
UPF0079	PF02367.12	gi|55376829|ref|YP_134680.1|	-	0.0063	16.1	0.0	0.013	15.1	0.0	1.5	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
MMR_HSR1	PF01926.18	gi|55376829|ref|YP_134680.1|	-	0.0068	16.3	0.2	0.03	14.2	0.1	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_10	PF12846.2	gi|55376829|ref|YP_134680.1|	-	0.0099	15.3	0.1	0.022	14.2	0.0	1.6	2	0	0	2	2	2	1	AAA-like	domain
AAA	PF00004.24	gi|55376829|ref|YP_134680.1|	-	0.014	15.6	0.1	0.028	14.6	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|55376829|ref|YP_134680.1|	-	0.017	14.2	0.1	0.039	13.0	0.1	1.5	1	0	0	1	1	1	0	Zeta	toxin
KAP_NTPase	PF07693.9	gi|55376829|ref|YP_134680.1|	-	0.023	13.6	0.6	0.34	9.8	0.4	2.0	1	1	0	1	1	1	0	KAP	family	P-loop	domain
ATP_bind_1	PF03029.12	gi|55376829|ref|YP_134680.1|	-	0.028	13.9	0.2	1.2	8.5	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_19	PF13245.1	gi|55376829|ref|YP_134680.1|	-	0.03	14.0	0.3	0.14	11.9	0.1	2.1	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|55376829|ref|YP_134680.1|	-	0.032	14.5	0.2	0.065	13.5	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
cobW	PF02492.14	gi|55376829|ref|YP_134680.1|	-	0.033	13.6	0.3	0.08	12.3	0.0	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Mg_chelatase	PF01078.16	gi|55376829|ref|YP_134680.1|	-	0.033	13.3	0.1	0.15	11.1	0.0	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|55376829|ref|YP_134680.1|	-	0.046	13.9	0.0	0.08	13.1	0.0	1.5	1	1	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.10	gi|55376829|ref|YP_134680.1|	-	0.063	12.9	0.4	1.1	8.9	0.0	2.2	2	0	0	2	2	2	0	NTPase
SbcCD_C	PF13558.1	gi|55376829|ref|YP_134680.1|	-	0.068	13.0	0.3	0.85	9.5	0.2	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
APS_kinase	PF01583.15	gi|55376829|ref|YP_134680.1|	-	0.083	12.5	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
CobA_CobO_BtuR	PF02572.10	gi|55376829|ref|YP_134680.1|	-	0.088	12.4	0.2	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
AAA_28	PF13521.1	gi|55376829|ref|YP_134680.1|	-	0.1	12.5	0.1	0.21	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|55376829|ref|YP_134680.1|	-	0.23	10.2	0.6	1.5	7.5	0.0	2.0	2	0	0	2	2	2	0	NB-ARC	domain
Peripla_BP_2	PF01497.13	gi|55376830|ref|YP_134681.1|	-	1.7e-16	60.0	0.0	2.3e-16	59.6	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
ADH_N	PF08240.7	gi|55376832|ref|YP_134682.1|	-	5e-27	93.8	1.0	1.3e-26	92.4	0.7	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|55376832|ref|YP_134682.1|	-	1.4e-23	82.8	0.9	2.4e-23	82.1	0.6	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.1	gi|55376832|ref|YP_134682.1|	-	1.1e-06	28.2	0.1	2.5e-06	27.0	0.1	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
NADH_4Fe-4S	PF10589.4	gi|55376832|ref|YP_134682.1|	-	0.37	9.9	3.6	1.8	7.8	2.5	2.3	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Pyr_redox_2	PF07992.9	gi|55376831|ref|YP_134683.1|	-	6.8e-19	68.5	0.8	1e-14	54.8	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|55376831|ref|YP_134683.1|	-	5.6e-13	48.5	0.5	1.9e-05	23.7	0.0	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|55376831|ref|YP_134683.1|	-	7.1e-11	41.2	0.1	1.8e-05	23.4	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|55376831|ref|YP_134683.1|	-	1.1e-09	38.7	2.0	6.3e-05	23.1	0.1	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|55376831|ref|YP_134683.1|	-	1.7e-09	37.2	0.7	6.2e-06	25.5	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_2	PF00890.19	gi|55376831|ref|YP_134683.1|	-	1.1e-07	31.1	2.0	6.3e-07	28.5	0.1	2.1	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|55376831|ref|YP_134683.1|	-	1.4e-06	27.6	2.8	2.8e-05	23.3	0.0	2.1	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|55376831|ref|YP_134683.1|	-	4.3e-06	26.6	0.0	1.1e-05	25.3	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|55376831|ref|YP_134683.1|	-	7.8e-06	25.7	0.2	0.036	13.8	0.1	2.5	2	0	0	2	2	2	2	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|55376831|ref|YP_134683.1|	-	1.6e-05	23.9	0.2	0.00029	19.8	0.1	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|55376831|ref|YP_134683.1|	-	6.9e-05	22.0	0.1	0.00014	21.0	0.0	1.6	1	1	0	1	1	1	1	Thi4	family
Pyr_redox	PF00070.22	gi|55376831|ref|YP_134683.1|	-	0.00029	21.1	0.4	0.0054	17.1	0.2	2.6	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.1	gi|55376831|ref|YP_134683.1|	-	0.0024	16.8	0.2	0.92	8.3	0.0	2.1	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.7	gi|55376831|ref|YP_134683.1|	-	0.0094	14.9	0.1	0.026	13.4	0.0	1.7	2	0	0	2	2	2	1	Lycopene	cyclase	protein
CPSase_L_chain	PF00289.17	gi|55376831|ref|YP_134683.1|	-	0.018	15.1	0.0	2.1	8.4	0.0	2.3	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
AlaDh_PNT_C	PF01262.16	gi|55376831|ref|YP_134683.1|	-	0.02	14.4	0.5	0.055	13.0	0.0	1.8	1	1	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.1	gi|55376831|ref|YP_134683.1|	-	0.067	13.4	0.0	0.17	12.1	0.0	1.8	1	1	0	1	1	1	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.1	gi|55376831|ref|YP_134683.1|	-	0.1	12.8	0.0	0.16	12.2	0.0	1.7	1	1	0	1	1	1	0	Putative	NAD(P)-binding
PALP	PF00291.20	gi|55376831|ref|YP_134683.1|	-	0.47	9.6	3.0	9.4	5.3	0.1	2.1	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
ThuA	PF06283.6	gi|55376834|ref|YP_134685.1|	-	1e-48	165.9	0.5	1.2e-48	165.7	0.4	1.0	1	0	0	1	1	1	1	Trehalose	utilisation
Lactate_perm	PF02652.9	gi|55376835|ref|YP_134686.1|	-	1.4e-101	340.6	45.8	3.5e-53	180.9	17.0	2.1	2	0	0	2	2	2	2	L-lactate	permease
FAD-oxidase_C	PF02913.14	gi|55376836|ref|YP_134687.1|	-	4.7e-66	222.6	0.0	8.8e-66	221.7	0.0	1.5	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|55376836|ref|YP_134687.1|	-	1.9e-39	134.2	0.1	4.1e-39	133.2	0.0	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.1	gi|55376836|ref|YP_134687.1|	-	1.6e-07	31.5	3.2	3.2e-07	30.5	2.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|55376836|ref|YP_134687.1|	-	2.5e-07	30.6	4.7	4.8e-07	29.6	3.3	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.11	gi|55376836|ref|YP_134687.1|	-	1.4e-06	28.1	0.0	0.0016	18.4	0.0	2.7	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_9	PF13187.1	gi|55376836|ref|YP_134687.1|	-	0.00099	19.3	2.3	0.0078	16.4	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|55376836|ref|YP_134687.1|	-	0.0011	19.2	0.3	0.0011	19.2	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
PP2C_C	PF07830.8	gi|55376836|ref|YP_134687.1|	-	0.014	15.4	0.1	0.096	12.8	0.0	2.2	2	0	0	2	2	2	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
Fer4_21	PF14697.1	gi|55376836|ref|YP_134687.1|	-	0.033	14.0	4.5	0.23	11.3	0.4	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.5	gi|55376836|ref|YP_134687.1|	-	0.14	11.2	0.2	0.25	10.4	0.2	1.2	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_10	PF13237.1	gi|55376836|ref|YP_134687.1|	-	0.22	11.3	9.5	0.056	13.2	1.2	2.4	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|55376836|ref|YP_134687.1|	-	0.25	11.7	7.0	4.3	7.7	5.3	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|55376836|ref|YP_134687.1|	-	9.8	5.9	13.2	0.18	11.4	2.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF2101	PF09874.4	gi|55376838|ref|YP_134689.1|	-	0.16	11.4	2.3	0.42	10.0	1.6	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2101)
DUF2839	PF10999.3	gi|55376838|ref|YP_134689.1|	-	7.7	6.6	6.3	8.2	6.5	0.7	3.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2839)
HTH_20	PF12840.2	gi|55376839|ref|YP_134690.1|	-	3.3e-05	23.5	0.0	5.2e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|55376839|ref|YP_134690.1|	-	0.0044	16.5	0.0	0.0086	15.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|55376839|ref|YP_134690.1|	-	0.0064	16.1	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|55376839|ref|YP_134690.1|	-	0.01	15.4	0.2	0.023	14.3	0.1	1.6	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.14	gi|55376839|ref|YP_134690.1|	-	0.067	12.9	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.2	gi|55376839|ref|YP_134690.1|	-	0.075	13.2	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Metallophos_2	PF12850.2	gi|55376840|ref|YP_134691.1|	-	1.8e-12	47.3	0.2	2.5e-11	43.6	0.2	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|55376840|ref|YP_134691.1|	-	0.007	15.7	3.7	1.3	8.3	1.9	2.9	2	1	0	2	2	2	2	Calcineurin-like	phosphoesterase
PBC	PF03792.8	gi|55376840|ref|YP_134691.1|	-	0.014	15.1	0.0	0.021	14.4	0.0	1.2	1	0	0	1	1	1	0	PBC	domain
RadC	PF04002.10	gi|55376840|ref|YP_134691.1|	-	0.024	14.3	0.0	0.064	12.9	0.0	1.6	1	0	0	1	1	1	0	RadC-like	JAB	domain
ADH_N	PF08240.7	gi|55376841|ref|YP_134692.1|	-	3.6e-32	110.3	3.0	8.4e-32	109.1	2.1	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|55376841|ref|YP_134692.1|	-	1.8e-22	79.2	0.4	2.8e-22	78.6	0.3	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|55376841|ref|YP_134692.1|	-	3.9e-07	31.0	0.9	1.7e-06	28.9	0.1	2.2	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
TOBE_2	PF08402.5	gi|55376841|ref|YP_134692.1|	-	0.074	13.0	1.7	0.26	11.3	0.2	2.7	2	0	0	2	2	2	0	TOBE	domain
DUF2318	PF10080.4	gi|55376841|ref|YP_134692.1|	-	0.11	12.2	1.3	0.34	10.7	0.0	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2318)
XPA_N	PF01286.13	gi|55376841|ref|YP_134692.1|	-	1.3	8.7	4.6	0.91	9.2	0.8	2.1	2	0	0	2	2	2	0	XPA	protein	N-terminal
Peptidase_M48	PF01435.13	gi|55376842|ref|YP_134693.1|	-	4.9e-40	137.4	0.0	5.9e-40	137.2	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|55376842|ref|YP_134693.1|	-	3e-06	26.4	0.3	6e-06	25.4	0.0	1.7	2	0	0	2	2	2	1	BlaR1	peptidase	M56
Peptidase_MA_2	PF13485.1	gi|55376842|ref|YP_134693.1|	-	0.012	15.6	0.0	0.019	15.0	0.0	1.4	1	0	0	1	1	1	0	Peptidase	MA	superfamily
SprT-like	PF10263.4	gi|55376842|ref|YP_134693.1|	-	0.16	11.6	0.0	0.24	11.0	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
Peptidase_M19	PF01244.16	gi|55376843|ref|YP_134694.1|	-	0.11	11.3	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	Membrane	dipeptidase	(Peptidase	family	M19)
Aldo_ket_red	PF00248.16	gi|55376844|ref|YP_134695.1|	-	5.4e-60	202.6	0.0	6.7e-60	202.3	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
EamA	PF00892.15	gi|55376845|ref|YP_134696.1|	-	2e-34	118.3	30.1	3.7e-17	62.5	8.6	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.11	gi|55376845|ref|YP_134696.1|	-	4e-07	29.8	17.7	0.0012	18.4	1.0	2.7	3	0	0	3	3	3	2	Triose-phosphate	Transporter	family
EmrE	PF13536.1	gi|55376845|ref|YP_134696.1|	-	0.0012	18.9	13.7	0.0012	18.9	9.5	3.8	1	1	2	3	3	3	2	Multidrug	resistance	efflux	transporter
RseC_MucC	PF04246.7	gi|55376845|ref|YP_134696.1|	-	0.011	15.2	1.0	0.011	15.2	0.7	3.5	3	2	3	6	6	6	0	Positive	regulator	of	sigma(E),	RseC/MucC
NAD_binding_10	PF13460.1	gi|55376846|ref|YP_134697.1|	-	1.5e-25	90.2	5.1	2e-25	89.8	3.5	1.1	1	0	0	1	1	1	1	NADH(P)-binding
NmrA	PF05368.8	gi|55376846|ref|YP_134697.1|	-	6.1e-10	38.7	0.0	1.1e-09	37.9	0.0	1.5	1	1	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.14	gi|55376846|ref|YP_134697.1|	-	1.4e-07	30.4	0.0	2e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.16	gi|55376846|ref|YP_134697.1|	-	1.7e-07	30.9	0.0	2.2e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Semialdhyde_dh	PF01118.19	gi|55376846|ref|YP_134697.1|	-	1.6e-05	25.1	0.1	2.5e-05	24.5	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.20	gi|55376846|ref|YP_134697.1|	-	0.037	13.9	5.1	0.12	12.2	1.3	2.4	1	1	1	2	2	2	0	short	chain	dehydrogenase
KR	PF08659.5	gi|55376846|ref|YP_134697.1|	-	0.05	13.2	0.7	0.19	11.3	0.2	2.0	1	1	1	2	2	2	0	KR	domain
Bac_luciferase	PF00296.15	gi|55376847|ref|YP_134698.1|	-	4.7e-49	167.1	2.1	4.7e-49	167.1	1.4	1.8	1	1	1	2	2	2	1	Luciferase-like	monooxygenase
DUF2761	PF10959.3	gi|55376847|ref|YP_134698.1|	-	0.067	12.8	0.7	0.35	10.5	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2761)
Methyltransf_18	PF12847.2	gi|55376848|ref|YP_134699.1|	-	8.2e-15	55.3	0.0	1.2e-14	54.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376848|ref|YP_134699.1|	-	2.3e-09	37.1	0.0	5.8e-09	35.8	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.9	gi|55376848|ref|YP_134699.1|	-	5.2e-09	35.5	0.0	6.6e-09	35.2	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_26	PF13659.1	gi|55376848|ref|YP_134699.1|	-	2e-08	34.2	0.5	4.3e-08	33.1	0.2	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|55376848|ref|YP_134699.1|	-	2.1e-08	34.5	0.0	3.5e-08	33.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|55376848|ref|YP_134699.1|	-	2.6e-08	33.6	0.0	3.1e-08	33.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376848|ref|YP_134699.1|	-	3.3e-08	33.8	0.0	5e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|55376848|ref|YP_134699.1|	-	9.5e-08	31.4	0.0	1.3e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|55376848|ref|YP_134699.1|	-	3.6e-06	26.4	0.0	6.4e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|55376848|ref|YP_134699.1|	-	1.4e-05	24.7	0.0	1.8e-05	24.3	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
UPF0020	PF01170.13	gi|55376848|ref|YP_134699.1|	-	0.00027	20.5	0.0	0.00038	20.0	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_12	PF08242.7	gi|55376848|ref|YP_134699.1|	-	0.00043	20.6	0.0	0.00088	19.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|55376848|ref|YP_134699.1|	-	0.048	13.1	0.0	0.068	12.6	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.8	gi|55376848|ref|YP_134699.1|	-	0.051	12.6	0.0	0.066	12.3	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Met_10	PF02475.11	gi|55376848|ref|YP_134699.1|	-	0.11	12.0	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_3	PF01596.12	gi|55376848|ref|YP_134699.1|	-	0.14	11.1	0.0	0.2	10.7	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
DUF726	PF05277.7	gi|55376849|ref|YP_134700.1|	-	2.6e-13	49.5	0.0	3.3e-13	49.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF726)
DUF900	PF05990.7	gi|55376849|ref|YP_134700.1|	-	7.7e-12	45.0	0.0	9.7e-12	44.6	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
Abhydrolase_5	PF12695.2	gi|55376849|ref|YP_134700.1|	-	5.3e-05	22.9	1.3	8.2e-05	22.3	0.9	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|55376849|ref|YP_134700.1|	-	0.00056	19.8	5.1	0.00086	19.2	3.5	1.4	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Lipase	PF00151.14	gi|55376849|ref|YP_134700.1|	-	0.00079	18.7	0.0	0.0011	18.2	0.0	1.1	1	0	0	1	1	1	1	Lipase
Lipase_2	PF01674.13	gi|55376849|ref|YP_134700.1|	-	0.0061	15.8	0.0	0.0098	15.2	0.0	1.3	1	0	0	1	1	1	1	Lipase	(class	2)
Wzy_C	PF04932.10	gi|55376850|ref|YP_134701.1|	-	0.48	10.1	2.7	0.49	10.1	1.9	1.1	1	0	0	1	1	1	0	O-Antigen	ligase
ATPase_gene1	PF09527.5	gi|55376850|ref|YP_134701.1|	-	0.6	9.9	10.9	8	6.3	0.0	2.1	2	0	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
PepSY_TM_2	PF13703.1	gi|55376850|ref|YP_134701.1|	-	2.5	8.3	7.1	1.7	8.8	3.8	1.7	1	1	0	1	1	1	0	PepSY-associated	TM	helix
DUF2929	PF11151.3	gi|55376850|ref|YP_134701.1|	-	4.5	7.4	6.8	3.4	7.8	3.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2929)
DUF3487	PF11990.3	gi|55376850|ref|YP_134701.1|	-	7.4	5.9	7.0	11	5.4	4.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF3267	PF11667.3	gi|55376851|ref|YP_134702.1|	-	5.6e-22	78.0	1.3	5.6e-22	78.0	0.9	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3267)
Metallophos	PF00149.23	gi|55376852|ref|YP_134703.1|	-	9.3e-09	34.9	0.4	1.9e-08	33.9	0.3	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|55376852|ref|YP_134703.1|	-	3.3e-08	33.5	0.0	4.4e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
PP_kinase_C	PF13090.1	gi|55376853|ref|YP_134704.1|	-	1.2e-152	507.5	0.0	1.6e-152	507.1	0.0	1.2	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain
PP_kinase	PF02503.12	gi|55376853|ref|YP_134704.1|	-	2.8e-60	203.3	1.4	5.2e-60	202.4	1.0	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.1	gi|55376853|ref|YP_134704.1|	-	1.6e-36	124.6	0.1	4.8e-36	123.1	0.0	1.9	2	0	0	2	2	2	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.1	gi|55376853|ref|YP_134704.1|	-	2.7e-10	40.0	0.0	1.3e-05	24.9	0.0	2.4	2	0	0	2	2	2	2	PLD-like	domain
AIM24	PF01987.12	gi|55376854|ref|YP_134705.1|	-	1.6e-44	151.9	2.4	1.9e-44	151.7	1.6	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Methyltransf_11	PF08241.7	gi|55376855|ref|YP_134706.1|	-	1e-15	57.9	0.0	1.1e-14	54.6	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376855|ref|YP_134706.1|	-	9.3e-11	41.7	0.0	1.1e-10	41.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|55376855|ref|YP_134706.1|	-	1.9e-09	37.0	0.0	3.3e-09	36.1	0.0	1.3	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.1	gi|55376855|ref|YP_134706.1|	-	1.9e-09	37.2	0.0	2.3e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|55376855|ref|YP_134706.1|	-	1.2e-08	35.3	0.0	2.9e-08	34.0	0.0	1.6	2	1	1	3	3	3	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376855|ref|YP_134706.1|	-	5.3e-08	33.1	0.0	1e-07	32.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|55376855|ref|YP_134706.1|	-	8.8e-06	26.2	0.0	1.9e-05	25.1	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|55376855|ref|YP_134706.1|	-	9.6e-05	22.3	0.0	0.0002	21.3	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|55376855|ref|YP_134706.1|	-	0.0085	15.7	0.0	0.014	15.0	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
MatE	PF01554.13	gi|55376856|ref|YP_134707.1|	-	1.3e-62	210.1	33.7	1.3e-34	119.1	11.0	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.1	gi|55376856|ref|YP_134707.1|	-	9.7e-07	28.6	40.0	5.6e-05	22.9	11.2	4.7	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.1	gi|55376856|ref|YP_134707.1|	-	0.31	10.4	48.2	0.049	13.0	3.1	3.4	1	1	2	3	3	3	0	Polysaccharide	biosynthesis	protein
Presenilin	PF01080.12	gi|55376856|ref|YP_134707.1|	-	1.9	7.1	10.4	0.95	8.2	1.9	2.3	2	0	0	2	2	2	0	Presenilin
TetR_N	PF00440.18	gi|55376857|ref|YP_134708.1|	-	2.4e-13	49.5	0.7	4.1e-13	48.7	0.5	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.1	gi|55376857|ref|YP_134708.1|	-	2.2e-11	43.7	1.4	2.2e-11	43.7	1.0	1.8	2	0	0	2	2	2	1	Bacterial	transcriptional	repressor
TetR_C_6	PF13977.1	gi|55376858|ref|YP_134709.1|	-	5.5e-21	74.7	3.0	7.2e-21	74.3	0.6	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|55376858|ref|YP_134709.1|	-	2e-10	40.1	0.4	3.5e-10	39.3	0.3	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_4	PF08359.6	gi|55376858|ref|YP_134709.1|	-	0.0055	16.6	0.0	0.0095	15.8	0.0	1.3	1	0	0	1	1	1	1	YsiA-like	protein,	C-terminal	region
Sigma70_r4	PF04545.11	gi|55376858|ref|YP_134709.1|	-	0.051	12.9	0.0	0.11	11.8	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
PRC	PF05239.11	gi|55376860|ref|YP_134711.1|	-	3.8e-08	33.0	0.0	4.6e-08	32.8	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
Ribosomal_L21p	PF00829.16	gi|55376861|ref|YP_134712.1|	-	0.022	14.8	0.1	0.25	11.5	0.0	2.4	2	0	0	2	2	2	0	Ribosomal	prokaryotic	L21	protein
YpM	PF09144.5	gi|55376861|ref|YP_134712.1|	-	0.037	13.9	0.1	0.45	10.4	0.1	2.2	2	0	0	2	2	2	0	Yersinia	pseudotuberculosis	mitogen
HTH_20	PF12840.2	gi|55376862|ref|YP_134713.1|	-	6.3e-14	51.5	0.0	1e-13	50.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376862|ref|YP_134713.1|	-	1.1e-05	24.6	0.0	1.8e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|55376862|ref|YP_134713.1|	-	1.4e-05	24.6	0.0	2.4e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|55376862|ref|YP_134713.1|	-	0.044	13.4	0.0	0.083	12.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.14	gi|55376862|ref|YP_134713.1|	-	0.14	11.4	0.0	0.25	10.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.7	gi|55376862|ref|YP_134713.1|	-	0.14	11.5	0.0	0.26	10.7	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
Reticulon	PF02453.12	gi|55376862|ref|YP_134713.1|	-	0.15	11.6	0.3	0.26	10.9	0.2	1.3	1	0	0	1	1	1	0	Reticulon
Abi	PF02517.11	gi|55376863|ref|YP_134714.1|	-	1.1e-12	47.9	18.2	3e-11	43.3	12.6	2.7	1	1	0	1	1	1	1	CAAX	protease	self-immunity
DUF1212	PF06738.7	gi|55376863|ref|YP_134714.1|	-	1.2	8.5	15.8	0.4	10.1	3.1	2.5	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF1212)
ADH_N	PF08240.7	gi|55376864|ref|YP_134715.1|	-	1.5e-27	95.4	0.7	9e-27	92.9	0.5	2.0	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|55376864|ref|YP_134715.1|	-	3.1e-09	36.4	0.0	5.6e-09	35.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.1	gi|55376864|ref|YP_134715.1|	-	3.8e-09	36.0	2.1	9.2e-09	34.8	1.4	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
Methyltransf_18	PF12847.2	gi|55376864|ref|YP_134715.1|	-	0.00073	20.0	0.0	0.0019	18.7	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
HI0933_like	PF03486.9	gi|55376864|ref|YP_134715.1|	-	0.059	11.8	0.2	0.19	10.1	0.1	1.7	2	0	0	2	2	2	0	HI0933-like	protein
Shikimate_DH	PF01488.15	gi|55376864|ref|YP_134715.1|	-	0.14	12.2	0.0	2.5	8.2	0.0	2.1	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
zf-DBF	PF07535.7	gi|55376864|ref|YP_134715.1|	-	0.88	9.3	3.3	1.6	8.4	2.3	1.4	1	0	0	1	1	1	0	DBF	zinc	finger
cobW	PF02492.14	gi|55376866|ref|YP_134717.1|	-	2.4e-47	160.7	0.0	3.1e-47	160.3	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.9	gi|55376866|ref|YP_134717.1|	-	2.5e-24	84.8	0.0	4.4e-24	84.0	0.0	1.4	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
AAA_16	PF13191.1	gi|55376866|ref|YP_134717.1|	-	0.0014	18.6	0.1	0.006	16.5	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
T2SE	PF00437.15	gi|55376866|ref|YP_134717.1|	-	0.0022	16.9	0.0	0.0033	16.3	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|55376866|ref|YP_134717.1|	-	0.0036	17.0	0.2	0.01	15.5	0.1	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_10	PF12846.2	gi|55376866|ref|YP_134717.1|	-	0.0049	16.3	0.0	0.0079	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
AAA_33	PF13671.1	gi|55376866|ref|YP_134717.1|	-	0.0064	16.3	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
GTP_EFTU	PF00009.22	gi|55376866|ref|YP_134717.1|	-	0.0067	15.8	0.0	1	8.7	0.0	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
AAA_22	PF13401.1	gi|55376866|ref|YP_134717.1|	-	0.0086	16.2	0.0	0.015	15.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|55376866|ref|YP_134717.1|	-	0.013	14.6	0.0	0.022	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
UPF0079	PF02367.12	gi|55376866|ref|YP_134717.1|	-	0.027	14.0	0.0	0.047	13.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|55376866|ref|YP_134717.1|	-	0.028	14.3	0.2	0.06	13.3	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
AAA_17	PF13207.1	gi|55376866|ref|YP_134717.1|	-	0.035	14.9	0.2	0.065	14.0	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|55376866|ref|YP_134717.1|	-	0.04	13.6	0.0	0.068	12.8	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|55376866|ref|YP_134717.1|	-	0.05	13.9	0.0	0.12	12.6	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_23	PF13476.1	gi|55376866|ref|YP_134717.1|	-	0.069	13.4	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|55376866|ref|YP_134717.1|	-	0.07	12.6	0.2	0.16	11.5	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.7	gi|55376866|ref|YP_134717.1|	-	0.078	12.0	0.0	0.13	11.3	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_14	PF13173.1	gi|55376866|ref|YP_134717.1|	-	0.088	12.7	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|55376866|ref|YP_134717.1|	-	0.11	12.1	0.0	0.17	11.5	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
ABC_tran	PF00005.22	gi|55376866|ref|YP_134717.1|	-	0.12	12.6	0.0	0.2	11.9	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
ArgK	PF03308.11	gi|55376866|ref|YP_134717.1|	-	0.13	11.0	0.8	2.1	7.0	0.1	2.7	3	0	0	3	3	3	0	ArgK	protein
Guanylate_kin	PF00625.16	gi|55376866|ref|YP_134717.1|	-	0.16	11.4	0.0	0.33	10.3	0.0	1.4	1	0	0	1	1	1	0	Guanylate	kinase
Creatininase	PF02633.9	gi|55376867|ref|YP_134718.1|	-	3.9e-70	235.6	4.2	4.5e-70	235.4	2.9	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Molybdopterin	PF00384.17	gi|55376868|ref|YP_134719.1|	-	2.3e-84	283.6	0.0	3e-84	283.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|55376868|ref|YP_134719.1|	-	3.6e-34	116.8	0.0	6.5e-34	116.0	0.0	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.1	gi|55376868|ref|YP_134719.1|	-	1e-26	92.5	0.2	2.4e-26	91.3	0.1	1.7	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.4	gi|55376868|ref|YP_134719.1|	-	1.5e-14	52.9	0.6	1.5e-14	52.9	0.4	2.3	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdop_Fe4S4	PF04879.11	gi|55376868|ref|YP_134719.1|	-	5.6e-10	38.8	0.1	1.8e-09	37.2	0.0	2.0	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_7	PF12838.2	gi|55376868|ref|YP_134719.1|	-	2e-08	34.4	15.9	3.1e-08	33.8	6.3	3.6	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|55376868|ref|YP_134719.1|	-	3.1e-08	33.3	8.8	3.1e-08	33.3	6.1	3.0	4	0	0	4	4	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|55376868|ref|YP_134719.1|	-	1.3e-07	31.2	9.3	1.3e-07	31.2	6.4	3.2	4	1	0	4	4	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|55376868|ref|YP_134719.1|	-	3.2e-07	29.6	20.7	0.00015	21.2	0.7	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|55376868|ref|YP_134719.1|	-	1.8e-06	27.8	8.1	1.8e-06	27.8	5.6	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|55376868|ref|YP_134719.1|	-	3.3e-06	26.7	12.3	2.1e-05	24.1	2.0	4.2	5	0	0	5	5	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|55376868|ref|YP_134719.1|	-	3.7e-06	27.5	6.7	0.0038	17.9	0.2	4.1	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|55376868|ref|YP_134719.1|	-	8.2e-05	22.7	20.3	0.00028	21.1	9.5	3.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|55376868|ref|YP_134719.1|	-	0.00076	19.2	3.1	0.00076	19.2	2.1	4.9	5	0	0	5	5	5	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|55376868|ref|YP_134719.1|	-	0.00081	19.9	11.9	0.026	15.1	0.6	4.3	5	0	0	5	5	3	2	4Fe-4S	single	cluster	domain
NIPSNAP	PF07978.8	gi|55376868|ref|YP_134719.1|	-	0.031	14.2	0.0	0.093	12.7	0.0	1.8	1	0	0	1	1	1	0	NIPSNAP
CDC48_N	PF02359.13	gi|55376868|ref|YP_134719.1|	-	0.064	13.2	0.0	0.18	11.7	0.0	1.8	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Fer4_18	PF13746.1	gi|55376868|ref|YP_134719.1|	-	0.47	10.9	23.1	0.088	13.2	2.5	3.2	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|55376868|ref|YP_134719.1|	-	0.84	10.0	15.3	2.3	8.6	2.7	3.1	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Complex1_51K	PF01512.12	gi|55376869|ref|YP_134720.1|	-	1.4e-16	60.6	0.0	2.1e-16	60.0	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
NADH_4Fe-4S	PF10589.4	gi|55376869|ref|YP_134720.1|	-	3.3e-09	35.7	0.0	9.1e-09	34.3	0.0	1.8	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
DrsE	PF02635.10	gi|55376869|ref|YP_134720.1|	-	0.03	14.3	0.0	0.061	13.3	0.0	1.5	1	0	0	1	1	1	0	DsrE/DsrF-like	family
Ribonuc_L-PSP	PF01042.16	gi|55376871|ref|YP_134722.1|	-	8.9e-38	128.7	0.0	1e-37	128.5	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.1	gi|55376871|ref|YP_134722.1|	-	0.02	14.8	0.0	0.025	14.4	0.0	1.3	1	0	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
EamA	PF00892.15	gi|55376872|ref|YP_134723.1|	-	1.1e-10	41.6	16.8	1.3e-10	41.4	11.7	1.1	1	0	0	1	1	1	1	EamA-like	transporter	family
TPT	PF03151.11	gi|55376872|ref|YP_134723.1|	-	0.27	10.8	15.6	0.45	10.1	10.8	1.5	1	1	0	1	1	1	0	Triose-phosphate	Transporter	family
EmrE	PF13536.1	gi|55376872|ref|YP_134723.1|	-	2.2	8.5	20.2	6.5	6.9	14.0	1.8	1	1	0	1	1	1	0	Multidrug	resistance	efflux	transporter
DUF1129	PF06570.6	gi|55376872|ref|YP_134723.1|	-	5.1	6.3	7.7	6.8	5.9	0.7	2.1	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
TrkA_N	PF02254.13	gi|55376873|ref|YP_134724.1|	-	6.5e-27	93.8	1.7	1e-26	93.1	1.1	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.11	gi|55376873|ref|YP_134724.1|	-	1.3e-13	50.4	7.5	1.3e-13	50.4	5.2	3.0	4	1	0	4	4	4	1	Ion	channel
ADH_zinc_N	PF00107.21	gi|55376873|ref|YP_134724.1|	-	0.0074	15.8	0.3	0.059	12.9	0.1	2.3	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Ion_trans	PF00520.26	gi|55376873|ref|YP_134724.1|	-	0.047	12.9	0.6	0.09	12.0	0.5	1.4	1	0	0	1	1	1	0	Ion	transport	protein
NmrA	PF05368.8	gi|55376873|ref|YP_134724.1|	-	0.11	11.7	0.1	0.16	11.1	0.1	1.2	1	0	0	1	1	1	0	NmrA-like	family
NAD_binding_7	PF13241.1	gi|55376873|ref|YP_134724.1|	-	0.55	10.5	3.1	0.18	12.0	0.2	1.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
BCCT	PF02028.12	gi|55376874|ref|YP_134725.1|	-	2.7e-130	434.8	44.9	3.4e-130	434.5	31.1	1.1	1	0	0	1	1	1	1	BCCT	family	transporter
Pox_A9	PF04835.7	gi|55376874|ref|YP_134725.1|	-	0.0087	15.9	1.2	0.086	12.7	0.0	2.6	2	0	0	2	2	2	1	A9	protein	conserved	region
GATase	PF00117.23	gi|55376875|ref|YP_134726.1|	-	2.9e-47	160.6	0.0	3.2e-47	160.4	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|55376875|ref|YP_134726.1|	-	1e-07	31.6	0.4	2.4e-07	30.4	0.3	1.5	1	1	0	1	1	1	1	Peptidase	C26
Peripla_BP_2	PF01497.13	gi|55376875|ref|YP_134726.1|	-	0.14	11.2	0.0	0.2	10.7	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
Chorismate_bind	PF00425.13	gi|55376876|ref|YP_134727.1|	-	1.1e-97	326.3	0.0	3.9e-97	324.6	0.0	1.9	3	0	0	3	3	3	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|55376876|ref|YP_134727.1|	-	9.4e-16	58.0	0.0	2.7e-15	56.6	0.0	1.8	1	0	0	1	1	1	1	Anthranilate	synthase	component	I,	N	terminal	region
THF_DHG_CYH_C	PF02882.14	gi|55376877|ref|YP_134728.1|	-	1.1e-65	219.5	1.8	1.1e-65	219.5	1.2	1.4	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.18	gi|55376877|ref|YP_134728.1|	-	7.3e-37	125.9	0.0	1.1e-36	125.4	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
Zn-ribbon_8	PF09723.5	gi|55376878|ref|YP_134729.1|	-	0.0081	16.0	0.9	0.042	13.7	0.1	2.1	2	0	0	2	2	2	1	Zinc	ribbon	domain
DUF3268	PF11672.3	gi|55376878|ref|YP_134729.1|	-	0.02	14.9	1.7	0.022	14.8	0.1	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3268)
zf-ribbon_3	PF13248.1	gi|55376878|ref|YP_134729.1|	-	0.074	12.2	0.1	0.074	12.2	0.1	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|55376878|ref|YP_134729.1|	-	0.087	12.1	0.9	0.4	10.0	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-RING_3	PF14369.1	gi|55376878|ref|YP_134729.1|	-	0.14	12.1	3.7	13	5.8	2.6	2.7	1	1	0	1	1	1	0	zinc-finger
Cytochrome_C7	PF14522.1	gi|55376878|ref|YP_134729.1|	-	0.17	11.5	1.3	0.26	10.9	0.9	1.3	1	0	0	1	1	1	0	Cytochrome	c7
A2L_zn_ribbon	PF08792.5	gi|55376878|ref|YP_134729.1|	-	0.32	10.4	0.1	0.32	10.4	0.1	2.2	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
Hexapep	PF00132.19	gi|55376879|ref|YP_134730.1|	-	2.3e-11	42.6	7.6	6.7e-07	28.5	2.1	3.3	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.9	gi|55376879|ref|YP_134730.1|	-	0.00023	21.3	0.0	0.0004	20.5	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.1	gi|55376879|ref|YP_134730.1|	-	0.00056	19.4	1.3	0.00056	19.4	0.9	2.7	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
SDF	PF00375.13	gi|55376880|ref|YP_134731.1|	-	8.2e-114	380.3	37.9	9.3e-114	380.2	26.3	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
EMP70	PF02990.11	gi|55376880|ref|YP_134731.1|	-	0.24	9.8	9.0	0.35	9.2	2.3	2.3	2	0	0	2	2	2	0	Endomembrane	protein	70
EamA	PF00892.15	gi|55376881|ref|YP_134732.1|	-	5.4e-30	104.0	27.0	1.6e-15	57.2	9.8	2.4	2	1	0	2	2	2	2	EamA-like	transporter	family
RseC_MucC	PF04246.7	gi|55376881|ref|YP_134732.1|	-	0.0054	16.3	1.3	0.0054	16.3	0.9	4.1	2	2	3	5	5	5	1	Positive	regulator	of	sigma(E),	RseC/MucC
EmrE	PF13536.1	gi|55376881|ref|YP_134732.1|	-	0.0092	16.1	5.9	0.0092	16.1	4.1	3.8	2	2	2	4	4	4	2	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|55376881|ref|YP_134732.1|	-	1.5	8.4	21.5	0.33	10.5	7.1	2.4	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
HAD	PF12710.2	gi|55376882|ref|YP_134733.1|	-	3.6e-11	43.5	0.0	5.1e-11	43.0	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|55376882|ref|YP_134733.1|	-	7e-08	33.1	0.2	0.00025	21.5	0.0	2.1	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|55376882|ref|YP_134733.1|	-	2.2e-06	28.0	0.0	3.1e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.7	gi|55376882|ref|YP_134733.1|	-	0.0068	15.6	0.0	0.11	11.5	0.0	2.1	2	0	0	2	2	2	1	Putative	Phosphatase
UMPH-1	PF05822.7	gi|55376882|ref|YP_134733.1|	-	0.046	13.0	0.0	0.063	12.5	0.0	1.3	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
CoA_binding	PF02629.14	gi|55376882|ref|YP_134733.1|	-	0.14	12.6	0.1	0.26	11.8	0.0	1.4	1	0	0	1	1	1	0	CoA	binding	domain
Ribonuc_L-PSP	PF01042.16	gi|55376883|ref|YP_134734.1|	-	3.7e-40	136.4	0.0	4.1e-40	136.3	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
adh_short_C2	PF13561.1	gi|55376884|ref|YP_134735.1|	-	3.5e-34	118.6	0.0	4.3e-34	118.3	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|55376884|ref|YP_134735.1|	-	1.5e-32	112.8	0.5	1.9e-32	112.4	0.4	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|55376884|ref|YP_134735.1|	-	2.1e-12	47.1	0.7	3.1e-12	46.5	0.5	1.3	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|55376884|ref|YP_134735.1|	-	2.9e-05	23.6	0.9	8.8e-05	22.0	0.6	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|55376884|ref|YP_134735.1|	-	9.5e-05	22.4	1.2	0.00016	21.7	0.7	1.5	1	1	0	1	1	1	1	NADH(P)-binding
3HCDH_N	PF02737.13	gi|55376884|ref|YP_134735.1|	-	0.021	14.5	0.5	0.039	13.5	0.0	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|55376884|ref|YP_134735.1|	-	0.027	13.4	0.1	0.037	13.0	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
Shikimate_DH	PF01488.15	gi|55376884|ref|YP_134735.1|	-	0.027	14.5	0.0	0.05	13.6	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
RmlD_sub_bind	PF04321.12	gi|55376884|ref|YP_134735.1|	-	0.028	13.3	0.0	0.055	12.3	0.0	1.5	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
F420_oxidored	PF03807.12	gi|55376884|ref|YP_134735.1|	-	0.031	14.6	0.2	0.073	13.5	0.0	1.7	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Polysacc_synt_2	PF02719.10	gi|55376884|ref|YP_134735.1|	-	0.035	12.9	0.0	0.064	12.1	0.0	1.4	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
MR_MLE_C	PF13378.1	gi|55376885|ref|YP_134736.1|	-	3.5e-21	75.2	0.1	1.5e-18	66.7	0.0	2.4	2	0	0	2	2	2	2	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|55376885|ref|YP_134736.1|	-	2.2e-16	59.8	0.0	5.8e-16	58.5	0.0	1.7	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MR_MLE	PF01188.16	gi|55376885|ref|YP_134736.1|	-	2.8e-15	56.6	0.8	6.9e-15	55.3	0.4	1.9	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
DUF187	PF02638.10	gi|55376886|ref|YP_134737.1|	-	0.13	11.1	0.0	0.23	10.2	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	like	GH101
BPD_transp_1	PF00528.17	gi|55376887|ref|YP_134738.1|	-	2.8e-16	59.5	17.5	2.8e-16	59.5	12.1	1.8	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|55376888|ref|YP_134739.1|	-	2.1e-20	73.0	15.1	2.1e-20	73.0	10.4	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.20	gi|55376889|ref|YP_134740.1|	-	2e-40	139.4	0.1	2.9e-40	138.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|55376889|ref|YP_134740.1|	-	2.7e-35	122.4	0.0	4e-35	121.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|55376889|ref|YP_134740.1|	-	0.00011	21.9	0.0	0.00023	20.8	0.0	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|55376889|ref|YP_134740.1|	-	0.00014	21.3	0.0	0.35	10.1	0.0	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
Creatininase	PF02633.9	gi|55376890|ref|YP_134741.1|	-	2.9e-64	216.4	0.3	3.3e-64	216.2	0.2	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
ABC_tran	PF00005.22	gi|55376891|ref|YP_134742.1|	-	3.7e-32	111.4	0.0	6.6e-32	110.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|55376891|ref|YP_134742.1|	-	8.3e-11	41.7	0.1	2.6e-10	40.1	0.0	1.9	2	0	0	2	2	1	1	TOBE	domain
AAA_21	PF13304.1	gi|55376891|ref|YP_134742.1|	-	1.4e-08	35.0	0.0	0.00044	20.3	0.0	2.3	1	1	0	2	2	2	2	AAA	domain
TOBE	PF03459.12	gi|55376891|ref|YP_134742.1|	-	1.6e-07	31.3	0.1	4.8e-06	26.5	0.0	2.9	3	0	0	3	3	2	1	TOBE	domain
SMC_N	PF02463.14	gi|55376891|ref|YP_134742.1|	-	5.1e-05	22.6	1.2	0.00033	19.9	0.8	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|55376891|ref|YP_134742.1|	-	0.00037	20.5	0.1	0.00085	19.3	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55376891|ref|YP_134742.1|	-	0.0013	18.8	0.4	0.0033	17.5	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|55376891|ref|YP_134742.1|	-	0.0013	17.9	0.1	0.0029	16.7	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|55376891|ref|YP_134742.1|	-	0.0015	17.6	0.0	0.01	14.9	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
Rad17	PF03215.10	gi|55376891|ref|YP_134742.1|	-	0.0063	15.2	0.0	0.013	14.2	0.0	1.5	1	1	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
AAA_33	PF13671.1	gi|55376891|ref|YP_134742.1|	-	0.0072	16.2	0.9	0.016	15.0	0.6	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|55376891|ref|YP_134742.1|	-	0.011	16.5	0.6	0.027	15.2	0.4	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|55376891|ref|YP_134742.1|	-	0.013	14.9	0.0	0.025	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
AAA	PF00004.24	gi|55376891|ref|YP_134742.1|	-	0.016	15.3	0.8	0.1	12.8	0.5	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|55376891|ref|YP_134742.1|	-	0.02	14.6	0.6	0.13	11.9	0.0	2.2	2	0	0	2	2	2	0	NTPase
AAA_28	PF13521.1	gi|55376891|ref|YP_134742.1|	-	0.022	14.7	0.4	0.15	12.0	0.1	2.4	3	0	0	3	3	3	0	AAA	domain
AAA_23	PF13476.1	gi|55376891|ref|YP_134742.1|	-	0.022	15.0	0.0	0.17	12.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|55376891|ref|YP_134742.1|	-	0.024	14.0	0.0	0.25	10.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|55376891|ref|YP_134742.1|	-	0.026	14.0	0.0	0.058	12.9	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Miro	PF08477.8	gi|55376891|ref|YP_134742.1|	-	0.029	14.8	0.3	0.14	12.6	0.0	2.0	2	0	0	2	2	2	0	Miro-like	protein
MobB	PF03205.9	gi|55376891|ref|YP_134742.1|	-	0.055	13.1	0.2	0.18	11.5	0.1	1.9	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|55376891|ref|YP_134742.1|	-	0.066	12.7	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|55376891|ref|YP_134742.1|	-	0.074	12.7	0.1	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Arch_ATPase	PF01637.13	gi|55376891|ref|YP_134742.1|	-	0.092	12.4	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_14	PF13173.1	gi|55376891|ref|YP_134742.1|	-	0.1	12.5	0.0	0.25	11.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|55376891|ref|YP_134742.1|	-	0.12	11.2	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|55376891|ref|YP_134742.1|	-	0.12	12.7	0.1	0.2	11.9	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|55376891|ref|YP_134742.1|	-	0.12	11.8	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Zeta_toxin	PF06414.7	gi|55376891|ref|YP_134742.1|	-	0.13	11.2	0.3	0.34	9.9	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
AAA_19	PF13245.1	gi|55376891|ref|YP_134742.1|	-	0.16	11.7	0.1	0.35	10.6	0.1	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
IclR	PF01614.13	gi|55376892|ref|YP_134743.1|	-	4.2e-32	110.5	0.0	5e-31	107.0	0.0	2.1	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|55376892|ref|YP_134743.1|	-	1.1e-09	37.7	0.0	5.8e-09	35.4	0.0	2.2	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376892|ref|YP_134743.1|	-	5.4e-05	22.7	0.2	0.0003	20.4	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.15	gi|55376892|ref|YP_134743.1|	-	0.00027	20.5	0.1	0.0016	18.0	0.0	2.3	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|55376892|ref|YP_134743.1|	-	0.00067	19.4	0.0	0.0022	17.7	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|55376892|ref|YP_134743.1|	-	0.0008	19.0	0.0	0.0015	18.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|55376892|ref|YP_134743.1|	-	0.002	17.7	0.0	0.007	16.0	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Bombolitin	PF08096.6	gi|55376892|ref|YP_134743.1|	-	0.032	14.2	1.4	0.69	10.1	0.1	2.4	2	0	0	2	2	2	0	Bombolitin	family
Diacid_rec	PF05651.8	gi|55376892|ref|YP_134743.1|	-	0.038	13.4	0.0	0.062	12.7	0.0	1.3	1	0	0	1	1	1	0	Putative	sugar	diacid	recognition
Rrf2	PF02082.15	gi|55376892|ref|YP_134743.1|	-	0.046	13.8	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_34	PF13601.1	gi|55376892|ref|YP_134743.1|	-	0.051	13.6	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF742	PF05331.6	gi|55376892|ref|YP_134743.1|	-	0.067	12.7	0.0	0.13	11.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_24	PF13412.1	gi|55376892|ref|YP_134743.1|	-	0.079	12.3	0.0	0.22	10.9	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
IclR	PF01614.13	gi|55376893|ref|YP_134744.1|	-	6.2e-30	103.5	0.1	2.1e-29	101.8	0.0	1.8	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.5	gi|55376893|ref|YP_134744.1|	-	2.1e-07	30.4	0.0	5.5e-07	29.0	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|55376893|ref|YP_134744.1|	-	0.00019	21.1	0.0	0.00065	19.4	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376893|ref|YP_134744.1|	-	0.00023	20.7	0.0	0.00046	19.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|55376893|ref|YP_134744.1|	-	0.002	17.8	0.0	0.027	14.1	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|55376893|ref|YP_134744.1|	-	0.002	17.7	0.1	0.01	15.4	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|55376893|ref|YP_134744.1|	-	0.0022	18.2	0.1	0.047	14.0	0.1	2.8	3	0	0	3	3	3	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|55376893|ref|YP_134744.1|	-	0.018	14.7	0.0	0.04	13.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_DeoR	PF08220.7	gi|55376893|ref|YP_134744.1|	-	0.02	14.4	0.2	0.08	12.4	0.1	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376893|ref|YP_134744.1|	-	0.044	13.1	0.0	0.081	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
SBP_bac_8	PF13416.1	gi|55376895|ref|YP_134746.1|	-	1.1e-18	68.0	2.9	1.6e-18	67.4	2.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|55376895|ref|YP_134746.1|	-	5.6e-07	29.1	2.8	1.6e-06	27.6	1.9	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
UCR_Fe-S_N	PF10399.4	gi|55376895|ref|YP_134746.1|	-	0.00061	18.9	0.6	0.00061	18.9	0.5	2.1	2	0	0	2	2	2	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
SBP_bac_11	PF13531.1	gi|55376895|ref|YP_134746.1|	-	0.0019	17.8	0.0	0.019	14.6	0.0	2.5	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.4	gi|55376895|ref|YP_134746.1|	-	0.042	13.8	8.1	0.094	12.7	5.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Orbi_VP6	PF01516.11	gi|55376895|ref|YP_134746.1|	-	4.9	6.1	5.5	7.1	5.5	3.8	1.1	1	0	0	1	1	1	0	Orbivirus	helicase	VP6
ABC_tran	PF00005.22	gi|55376896|ref|YP_134747.1|	-	3.8e-33	114.6	0.0	6.9e-33	113.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|55376896|ref|YP_134747.1|	-	2.7e-24	84.9	0.5	1.3e-23	82.8	0.1	2.4	3	0	0	3	3	2	1	TOBE	domain
AAA_21	PF13304.1	gi|55376896|ref|YP_134747.1|	-	1e-06	28.9	0.1	0.0076	16.2	0.0	2.5	2	1	0	3	3	3	2	AAA	domain
Rad17	PF03215.10	gi|55376896|ref|YP_134747.1|	-	0.0014	17.3	0.0	0.0021	16.8	0.0	1.2	1	0	0	1	1	1	1	Rad17	cell	cycle	checkpoint	protein
SMC_N	PF02463.14	gi|55376896|ref|YP_134747.1|	-	0.0015	17.8	0.0	0.08	12.1	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|55376896|ref|YP_134747.1|	-	0.0023	17.9	0.2	0.004	17.1	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
ATP-synt_ab	PF00006.20	gi|55376896|ref|YP_134747.1|	-	0.011	15.2	0.0	0.013	14.9	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
RNA_helicase	PF00910.17	gi|55376896|ref|YP_134747.1|	-	0.011	15.8	0.0	0.027	14.6	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
DUF258	PF03193.11	gi|55376896|ref|YP_134747.1|	-	0.012	14.8	0.0	0.024	13.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|55376896|ref|YP_134747.1|	-	0.019	15.1	0.5	0.048	13.8	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|55376896|ref|YP_134747.1|	-	0.022	14.1	0.3	0.091	12.1	0.0	1.9	2	0	0	2	2	2	0	AAA-like	domain
AAA_29	PF13555.1	gi|55376896|ref|YP_134747.1|	-	0.026	14.0	0.1	0.057	12.9	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.9	gi|55376896|ref|YP_134747.1|	-	0.029	14.0	0.0	0.074	12.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|55376896|ref|YP_134747.1|	-	0.032	14.4	0.3	0.51	10.5	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.1	gi|55376896|ref|YP_134747.1|	-	0.039	14.2	0.0	0.49	10.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
G-alpha	PF00503.15	gi|55376896|ref|YP_134747.1|	-	0.055	12.1	0.0	0.074	11.7	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_17	PF13207.1	gi|55376896|ref|YP_134747.1|	-	0.074	13.8	0.7	0.37	11.6	0.5	2.2	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|55376896|ref|YP_134747.1|	-	0.078	12.1	0.0	1.6	7.8	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.1	gi|55376896|ref|YP_134747.1|	-	0.11	11.9	0.1	0.28	10.5	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|55376896|ref|YP_134747.1|	-	0.11	12.3	0.5	0.57	10.0	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|55376896|ref|YP_134747.1|	-	0.35	10.8	1.7	2.1	8.3	0.2	2.6	2	1	0	2	2	1	0	Putative	exonuclease	SbcCD,	C	subunit
BPD_transp_1	PF00528.17	gi|55376898|ref|YP_134749.1|	-	1.4e-14	54.0	7.0	1.7e-14	53.7	4.8	1.0	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4149	PF13664.1	gi|55376898|ref|YP_134749.1|	-	0.057	13.4	1.6	0.11	12.5	1.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
PalH	PF08733.5	gi|55376898|ref|YP_134749.1|	-	0.16	10.7	0.1	0.16	10.7	0.1	1.8	2	1	0	2	2	2	0	PalH/RIM21
BPD_transp_1	PF00528.17	gi|55376899|ref|YP_134750.1|	-	2.6e-17	62.9	19.9	2.6e-17	62.9	13.8	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ADH_N	PF08240.7	gi|55376900|ref|YP_134751.1|	-	7.4e-28	96.4	0.9	1.4e-27	95.6	0.3	1.6	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|55376900|ref|YP_134751.1|	-	1.4e-27	95.8	0.1	2.1e-27	95.2	0.1	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|55376900|ref|YP_134751.1|	-	0.0038	16.4	0.2	0.006	15.7	0.1	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|55376900|ref|YP_134751.1|	-	0.0045	16.5	0.3	0.0077	15.8	0.2	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ELFV_dehydrog	PF00208.16	gi|55376900|ref|YP_134751.1|	-	0.014	14.9	0.4	0.024	14.2	0.3	1.3	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Methyltransf_11	PF08241.7	gi|55376900|ref|YP_134751.1|	-	0.11	13.0	0.0	0.22	12.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|55376900|ref|YP_134751.1|	-	0.12	12.9	0.1	0.41	11.2	0.1	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
Aldedh	PF00171.17	gi|55376901|ref|YP_134752.1|	-	1.8e-163	544.2	0.0	2.2e-163	543.9	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
DFP	PF04127.10	gi|55376901|ref|YP_134752.1|	-	0.099	12.2	0.1	0.18	11.4	0.1	1.4	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
MFS_1	PF07690.11	gi|55376902|ref|YP_134753.1|	-	3.1e-45	154.4	69.2	3.1e-37	128.0	30.5	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.2	gi|55376902|ref|YP_134753.1|	-	0.0015	18.3	2.5	0.88	9.4	0.0	3.7	3	0	0	3	3	3	1	MFS_1	like	family
EutH	PF04346.7	gi|55376902|ref|YP_134753.1|	-	0.012	14.5	9.4	0.072	12.0	0.8	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	protein,	EutH
Sugar_tr	PF00083.19	gi|55376902|ref|YP_134753.1|	-	0.047	12.2	33.1	0.021	13.4	8.9	2.3	2	0	0	2	2	2	0	Sugar	(and	other)	transporter
CN_hydrolase	PF00795.17	gi|55376903|ref|YP_134754.1|	-	6.4e-33	113.6	0.0	1e-32	112.9	0.0	1.3	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
HTH_10	PF04967.7	gi|55376905|ref|YP_134756.1|	-	2e-15	56.0	0.0	3.3e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|55376905|ref|YP_134756.1|	-	0.0063	15.8	0.0	0.013	14.8	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|55376905|ref|YP_134756.1|	-	0.057	13.0	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_AsnC-type	PF13404.1	gi|55376905|ref|YP_134756.1|	-	0.072	12.6	0.1	0.13	11.7	0.1	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
TctA	PF01970.11	gi|55376906|ref|YP_134757.1|	-	0.0027	16.2	1.3	0.0031	15.9	0.9	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
DHFR_1	PF00186.14	gi|55376907|ref|YP_134758.1|	-	3e-51	173.1	0.0	3.7e-51	172.9	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
GCV_T	PF01571.16	gi|55376909|ref|YP_134760.1|	-	4.1e-41	140.6	0.0	5.9e-41	140.1	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|55376909|ref|YP_134760.1|	-	2.6e-09	36.9	0.0	6.6e-09	35.6	0.0	1.7	1	1	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
MTHFR	PF02219.12	gi|55376910|ref|YP_134761.1|	-	1.1e-13	50.9	0.0	2.8e-13	49.5	0.0	1.6	1	1	0	1	1	1	1	Methylenetetrahydrofolate	reductase
AstE_AspA	PF04952.9	gi|55376912|ref|YP_134763.1|	-	1.8e-42	145.2	0.1	2.3e-42	144.9	0.1	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.19	gi|55376912|ref|YP_134763.1|	-	0.037	13.6	0.0	0.053	13.1	0.0	1.4	1	1	0	1	1	1	0	Zinc	carboxypeptidase
Amidohydro_2	PF04909.9	gi|55376912|ref|YP_134763.1|	-	0.055	13.0	0.1	0.12	11.9	0.0	1.5	1	1	0	1	1	1	0	Amidohydrolase
DAO	PF01266.19	gi|55376913|ref|YP_134764.1|	-	2.7e-70	237.0	0.2	4.9e-70	236.2	0.1	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GCV_T	PF01571.16	gi|55376913|ref|YP_134764.1|	-	8.3e-66	221.3	0.0	1.4e-65	220.5	0.0	1.4	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|55376913|ref|YP_134764.1|	-	1.3e-15	57.1	0.0	3.6e-15	55.7	0.0	1.8	2	0	0	2	2	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
Pyr_redox_3	PF13738.1	gi|55376913|ref|YP_134764.1|	-	1.3e-07	31.9	0.2	7.8e-06	26.0	0.1	2.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
SoxG	PF04268.7	gi|55376913|ref|YP_134764.1|	-	3.5e-07	30.1	0.0	6.6e-07	29.2	0.0	1.5	1	0	0	1	1	1	1	Sarcosine	oxidase,	gamma	subunit	family
FAD_binding_2	PF00890.19	gi|55376913|ref|YP_134764.1|	-	1.4e-06	27.3	0.1	3.3e-06	26.2	0.1	1.6	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|55376913|ref|YP_134764.1|	-	3.7e-05	23.6	0.0	0.00012	22.0	0.0	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|55376913|ref|YP_134764.1|	-	0.00019	21.7	0.5	0.0057	17.0	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|55376913|ref|YP_134764.1|	-	0.0019	17.9	0.2	0.26	11.0	0.0	2.9	3	0	0	3	3	3	1	FAD-NAD(P)-binding
ThiF	PF00899.16	gi|55376913|ref|YP_134764.1|	-	0.004	16.9	0.1	0.01	15.6	0.1	1.7	1	0	0	1	1	1	1	ThiF	family
GMC_oxred_N	PF00732.14	gi|55376913|ref|YP_134764.1|	-	0.0082	15.3	0.2	0.021	13.9	0.0	1.7	2	0	0	2	2	2	1	GMC	oxidoreductase
TrkA_N	PF02254.13	gi|55376913|ref|YP_134764.1|	-	0.0089	16.0	0.0	0.027	14.4	0.0	1.9	1	0	0	1	1	1	1	TrkA-N	domain
HI0933_like	PF03486.9	gi|55376913|ref|YP_134764.1|	-	0.012	14.1	0.2	0.13	10.7	0.0	2.0	2	0	0	2	2	2	0	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|55376913|ref|YP_134764.1|	-	0.014	14.3	1.5	0.05	12.5	0.1	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
ApbA	PF02558.11	gi|55376913|ref|YP_134764.1|	-	0.019	14.3	0.1	0.036	13.4	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_2	PF07992.9	gi|55376913|ref|YP_134764.1|	-	0.04	13.8	0.1	0.16	11.8	0.0	2.0	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|55376913|ref|YP_134764.1|	-	0.041	12.9	1.3	0.12	11.4	0.4	2.1	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|55376913|ref|YP_134764.1|	-	0.12	11.4	0.5	1.6	7.7	0.0	2.3	2	0	0	2	2	2	0	Thi4	family
Ring_hydroxyl_A	PF00848.14	gi|55376914|ref|YP_134765.1|	-	1.5e-27	96.6	8.4	2.3e-27	96.0	5.8	1.3	1	0	0	1	1	1	1	Ring	hydroxylating	alpha	subunit	(catalytic	domain)
Rieske	PF00355.21	gi|55376914|ref|YP_134765.1|	-	9.9e-19	66.7	0.0	1.9e-18	65.8	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|55376914|ref|YP_134765.1|	-	0.022	14.4	0.0	0.054	13.2	0.0	1.6	2	0	0	2	2	2	0	Rieske-like	[2Fe-2S]	domain
RAMP	PF04901.8	gi|55376914|ref|YP_134765.1|	-	2.6	7.8	4.4	5	6.9	0.7	2.6	2	1	1	3	3	3	0	Receptor	activity	modifying	family
GCV_T	PF01571.16	gi|55376916|ref|YP_134767.1|	-	1.2e-59	201.2	0.0	1.9e-59	200.6	0.0	1.3	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.19	gi|55376916|ref|YP_134767.1|	-	5.7e-53	180.0	1.5	1.2e-52	179.0	1.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.6	gi|55376916|ref|YP_134767.1|	-	2.6e-19	69.0	0.0	1.3e-18	66.7	0.0	2.2	2	0	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
Pyr_redox_3	PF13738.1	gi|55376916|ref|YP_134767.1|	-	4.6e-07	30.1	0.1	4.3e-06	26.9	0.1	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|55376916|ref|YP_134767.1|	-	9.5e-06	25.5	0.1	4e-05	23.5	0.0	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
SoxG	PF04268.7	gi|55376916|ref|YP_134767.1|	-	1.3e-05	25.0	0.0	0.0004	20.2	0.0	2.3	1	1	1	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
FAD_binding_2	PF00890.19	gi|55376916|ref|YP_134767.1|	-	3.6e-05	22.7	0.7	0.00015	20.7	0.4	2.0	1	1	1	2	2	2	1	FAD	binding	domain
ApbA	PF02558.11	gi|55376916|ref|YP_134767.1|	-	0.00045	19.6	0.0	0.00088	18.7	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ThiF	PF00899.16	gi|55376916|ref|YP_134767.1|	-	0.00052	19.8	0.2	0.001	18.9	0.1	1.5	1	0	0	1	1	1	1	ThiF	family
Pyr_redox_2	PF07992.9	gi|55376916|ref|YP_134767.1|	-	0.00055	19.8	0.2	0.011	15.6	0.1	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|55376916|ref|YP_134767.1|	-	0.0017	18.4	0.0	0.0035	17.4	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
GMC_oxred_N	PF00732.14	gi|55376916|ref|YP_134767.1|	-	0.0022	17.2	0.0	0.0036	16.4	0.0	1.3	1	0	0	1	1	1	1	GMC	oxidoreductase
Pyr_redox	PF00070.22	gi|55376916|ref|YP_134767.1|	-	0.0023	18.2	1.4	0.0044	17.3	0.2	2.1	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|55376916|ref|YP_134767.1|	-	0.0075	15.2	0.3	0.012	14.5	0.2	1.3	1	0	0	1	1	1	1	Lycopene	cyclase	protein
TrkA_N	PF02254.13	gi|55376916|ref|YP_134767.1|	-	0.014	15.3	0.1	0.03	14.3	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_9	PF13454.1	gi|55376916|ref|YP_134767.1|	-	0.037	13.8	0.1	0.87	9.3	0.0	2.7	2	0	0	2	2	2	0	FAD-NAD(P)-binding
HI0933_like	PF03486.9	gi|55376916|ref|YP_134767.1|	-	0.11	10.9	0.2	1.7	6.9	0.2	2.1	2	0	0	2	2	2	0	HI0933-like	protein
Thi4	PF01946.12	gi|55376916|ref|YP_134767.1|	-	0.12	11.4	0.1	0.23	10.5	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
PALP	PF00291.20	gi|55376917|ref|YP_134768.1|	-	1.3e-78	264.3	4.7	1.8e-78	263.8	3.2	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.20	gi|55376917|ref|YP_134768.1|	-	1.5e-08	33.9	0.3	1.5e-08	33.9	0.2	2.2	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|55376917|ref|YP_134768.1|	-	9.2e-06	25.9	0.1	2.7e-05	24.4	0.1	1.9	1	0	0	1	1	1	1	ACT	domain
ACT_6	PF13740.1	gi|55376917|ref|YP_134768.1|	-	0.011	15.4	0.0	0.028	14.1	0.0	1.8	1	0	0	1	1	1	0	ACT	domain
Usp	PF00582.21	gi|55376918|ref|YP_134769.1|	-	2.2e-29	102.4	0.1	2.6e-29	102.2	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.19	gi|55376918|ref|YP_134769.1|	-	0.0006	19.1	0.5	0.00078	18.7	0.4	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
BCCT	PF02028.12	gi|55376920|ref|YP_134771.1|	-	3.5e-179	596.0	47.6	4.1e-179	595.8	33.0	1.0	1	0	0	1	1	1	1	BCCT	family	transporter
DUF21	PF01595.15	gi|55376921|ref|YP_134772.1|	-	0.21	10.8	11.3	0.089	12.0	6.1	1.5	1	1	0	2	2	2	0	Domain	of	unknown	function	DUF21
OrfB_Zn_ribbon	PF07282.6	gi|55376922|ref|YP_134773.1|	-	0.0076	15.8	7.5	0.23	11.1	0.1	2.5	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.7	gi|55376922|ref|YP_134773.1|	-	0.0095	15.7	7.1	0.16	11.8	0.4	2.6	2	1	0	2	2	2	1	zinc-ribbons
HypA	PF01155.14	gi|55376922|ref|YP_134773.1|	-	0.017	14.8	8.8	1.8	8.2	3.3	2.8	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_5	PF13719.1	gi|55376922|ref|YP_134773.1|	-	0.035	13.6	8.7	8.4	6.0	0.1	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|55376922|ref|YP_134773.1|	-	0.038	13.5	14.1	0.45	10.0	0.2	3.8	3	1	0	3	3	3	0	InsA	N-terminal	domain
zf-piccolo	PF05715.8	gi|55376922|ref|YP_134773.1|	-	0.069	13.1	0.1	0.069	13.1	0.1	2.3	2	1	0	2	2	2	0	Piccolo	Zn-finger
Zn-ribbon_8	PF09723.5	gi|55376922|ref|YP_134773.1|	-	0.08	12.9	11.9	4.7	7.2	3.7	3.9	3	1	1	4	4	4	0	Zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|55376922|ref|YP_134773.1|	-	0.11	12.8	11.3	0.36	11.1	1.0	2.9	1	1	2	3	3	3	0	Restriction	alleviation	protein	Lar
zinc_ribbon_4	PF13717.1	gi|55376922|ref|YP_134773.1|	-	0.17	11.6	9.3	13	5.6	0.1	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
GCC2_GCC3	PF07699.8	gi|55376922|ref|YP_134773.1|	-	0.24	11.0	3.6	0.27	10.8	0.7	2.2	2	0	0	2	2	2	0	GCC2	and	GCC3
DZR	PF12773.2	gi|55376922|ref|YP_134773.1|	-	0.35	10.7	10.0	0.77	9.6	1.1	2.7	1	1	1	2	2	2	0	Double	zinc	ribbon
TerY-C	PF15616.1	gi|55376922|ref|YP_134773.1|	-	0.38	10.6	5.7	2	8.3	1.9	2.7	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
IBR	PF01485.16	gi|55376922|ref|YP_134773.1|	-	0.46	10.3	10.7	3.8	7.4	1.5	2.4	1	1	1	2	2	2	0	IBR	domain
zf-CHY	PF05495.7	gi|55376922|ref|YP_134773.1|	-	0.48	10.6	7.7	5.6	7.1	4.9	2.2	1	1	1	2	2	2	0	CHY	zinc	finger
DnaJ_CXXCXGXG	PF00684.14	gi|55376922|ref|YP_134773.1|	-	0.75	9.8	5.6	13	5.9	4.1	2.3	1	1	0	1	1	1	0	DnaJ	central	domain
TF_Zn_Ribbon	PF08271.7	gi|55376922|ref|YP_134773.1|	-	0.8	9.0	8.9	3.3	7.1	1.1	3.1	3	0	0	3	3	3	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|55376922|ref|YP_134773.1|	-	0.9	9.4	17.4	2.9	7.7	3.2	3.1	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|55376922|ref|YP_134773.1|	-	1.5	8.3	8.1	4.1	6.9	0.0	3.4	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
YdjO	PF14169.1	gi|55376922|ref|YP_134773.1|	-	1.6	8.2	9.3	0.31	10.5	0.2	2.9	1	1	2	3	3	3	0	Cold-inducible	protein	YdjO
zf-DNA_Pol	PF08996.5	gi|55376922|ref|YP_134773.1|	-	1.8	7.8	4.5	1.2	8.4	0.1	2.4	1	1	1	2	2	2	0	DNA	Polymerase	alpha	zinc	finger
Mu-like_Com	PF10122.4	gi|55376922|ref|YP_134773.1|	-	2	7.5	5.9	11	5.1	0.2	3.0	3	0	0	3	3	3	0	Mu-like	prophage	protein	Com
TFIIS_C	PF01096.13	gi|55376922|ref|YP_134773.1|	-	2.9	7.6	14.1	23	4.6	1.7	4.1	4	0	0	4	4	4	0	Transcription	factor	S-II	(TFIIS)
zf-C3HC4_4	PF15227.1	gi|55376922|ref|YP_134773.1|	-	3	7.7	6.5	9.4	6.2	0.8	2.9	3	0	0	3	3	3	0	zinc	finger	of	C3HC4-type,	RING
Elf1	PF05129.8	gi|55376922|ref|YP_134773.1|	-	3.2	7.5	8.4	8.3	6.1	0.6	2.9	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
DNA_ligase_ZBD	PF03119.11	gi|55376922|ref|YP_134773.1|	-	4.5	7.0	9.3	3.7	7.3	0.2	2.9	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Opy2	PF09463.5	gi|55376922|ref|YP_134773.1|	-	7.5	6.7	13.1	18	5.5	0.5	4.0	4	0	0	4	4	4	0	Opy2	protein
zf-TFIIB	PF13453.1	gi|55376922|ref|YP_134773.1|	-	7.6	5.8	16.6	3.3	6.9	2.9	3.1	2	2	1	3	3	3	0	Transcription	factor	zinc-finger
Sgf11	PF08209.6	gi|55376922|ref|YP_134773.1|	-	8	5.8	8.4	12	5.3	0.0	3.5	4	0	0	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
FixQ	PF05545.6	gi|55376923|ref|YP_134774.1|	-	0.1	12.2	0.4	0.14	11.8	0.3	1.2	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
PMP1_2	PF08114.6	gi|55376923|ref|YP_134774.1|	-	0.27	10.7	1.5	0.36	10.3	1.1	1.2	1	0	0	1	1	1	0	ATPase	proteolipid	family
Pterin_bind	PF00809.17	gi|55376924|ref|YP_134775.1|	-	3.5e-72	242.1	0.2	7.3e-72	241.1	0.1	1.6	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.7	gi|55376924|ref|YP_134775.1|	-	1.3e-15	57.9	0.1	2.5e-15	57.0	0.1	1.5	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.16	gi|55376924|ref|YP_134775.1|	-	2e-06	27.7	0.0	6e-06	26.2	0.0	1.9	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
FTHFS	PF01268.14	gi|55376925|ref|YP_134776.1|	-	9.8e-241	799.5	0.0	1.1e-240	799.3	0.0	1.0	1	0	0	1	1	1	1	Formate--tetrahydrofolate	ligase
CTX_RstB	PF07459.6	gi|55376925|ref|YP_134776.1|	-	0.093	12.5	0.0	0.29	10.9	0.0	1.8	2	0	0	2	2	2	0	CTX	phage	RstB	protein
FTCD_C	PF04961.7	gi|55376926|ref|YP_134777.1|	-	2e-44	151.2	9.3	2.5e-44	150.9	6.5	1.1	1	0	0	1	1	1	1	Formiminotransferase-cyclodeaminase
FBPase	PF00316.15	gi|55376926|ref|YP_134777.1|	-	0.083	11.7	1.5	0.13	11.0	1.1	1.4	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase
Rifin_STEVOR	PF02009.11	gi|55376926|ref|YP_134777.1|	-	0.17	11.5	1.3	0.18	11.4	0.9	1.2	1	0	0	1	1	1	0	Rifin/stevor	family
GTP_cyclohydroI	PF01227.17	gi|55376927|ref|YP_134778.1|	-	1.6e-50	170.8	0.0	2.1e-50	170.5	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
RNA_pol_Rpb2_4	PF04566.8	gi|55376929|ref|YP_134780.1|	-	0.13	12.0	0.0	0.43	10.4	0.0	1.8	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
zf-C2H2_3	PF13878.1	gi|55376930|ref|YP_134781.1|	-	0.031	13.8	0.0	0.052	13.1	0.0	1.3	1	0	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
DUF4358	PF14270.1	gi|55376930|ref|YP_134781.1|	-	0.051	13.4	0.0	0.073	12.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
IncA	PF04156.9	gi|55376931|ref|YP_134782.1|	-	1.4e-08	34.5	61.8	0.0012	18.4	6.0	4.2	2	2	2	4	4	4	3	IncA	protein
EzrA	PF06160.7	gi|55376931|ref|YP_134782.1|	-	7.4e-07	27.7	30.2	0.00054	18.2	9.4	2.2	2	0	0	2	2	2	2	Septation	ring	formation	regulator,	EzrA
Seryl_tRNA_N	PF02403.17	gi|55376931|ref|YP_134782.1|	-	1e-06	28.7	44.2	0.00065	19.6	6.1	5.9	2	2	4	6	6	6	3	Seryl-tRNA	synthetase	N-terminal	domain
AAA_13	PF13166.1	gi|55376931|ref|YP_134782.1|	-	1.3e-05	23.9	31.0	0.0004	18.9	19.1	2.7	1	1	1	2	2	2	2	AAA	domain
DUF342	PF03961.8	gi|55376931|ref|YP_134782.1|	-	5.4e-05	21.7	25.1	0.0012	17.3	2.5	3.7	1	1	1	3	3	3	2	Protein	of	unknown	function	(DUF342)
Reo_sigmaC	PF04582.7	gi|55376931|ref|YP_134782.1|	-	5.8e-05	22.4	14.7	0.038	13.1	4.1	3.4	1	1	1	3	3	3	2	Reovirus	sigma	C	capsid	protein
COG2	PF06148.6	gi|55376931|ref|YP_134782.1|	-	0.00012	21.9	30.6	0.43	10.4	0.4	5.7	2	2	3	5	5	5	3	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
FliD_N	PF02465.13	gi|55376931|ref|YP_134782.1|	-	0.00066	19.9	7.2	1.8	8.9	0.4	4.9	2	2	2	5	5	4	1	Flagellar	hook-associated	protein	2	N-terminus
Myosin_tail_1	PF01576.14	gi|55376931|ref|YP_134782.1|	-	0.00074	17.3	49.3	0.0012	16.7	34.2	1.2	1	0	0	1	1	1	1	Myosin	tail
GAS	PF13851.1	gi|55376931|ref|YP_134782.1|	-	0.00075	18.7	37.1	0.072	12.2	8.5	3.5	2	2	1	3	3	3	3	Growth-arrest	specific	micro-tubule	binding
MAD	PF05557.8	gi|55376931|ref|YP_134782.1|	-	0.00088	17.5	47.9	0.14	10.1	4.9	3.6	2	2	1	3	3	3	2	Mitotic	checkpoint	protein
Fib_alpha	PF08702.5	gi|55376931|ref|YP_134782.1|	-	0.002	18.2	27.1	0.4	10.8	2.7	4.2	4	0	0	4	4	4	2	Fibrinogen	alpha/beta	chain	family
ERM	PF00769.14	gi|55376931|ref|YP_134782.1|	-	0.0029	17.1	12.5	0.0029	17.1	8.7	3.5	2	1	1	3	3	3	1	Ezrin/radixin/moesin	family
WEMBL	PF05701.6	gi|55376931|ref|YP_134782.1|	-	0.003	16.1	41.1	0.011	14.2	28.6	1.8	1	1	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
DUF3584	PF12128.3	gi|55376931|ref|YP_134782.1|	-	0.0032	14.8	43.0	0.037	11.3	7.6	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3584)
TMF_DNA_bd	PF12329.3	gi|55376931|ref|YP_134782.1|	-	0.0036	17.0	40.5	0.27	11.0	1.8	6.3	3	3	3	6	6	6	2	TATA	element	modulatory	factor	1	DNA	binding
Filament	PF00038.16	gi|55376931|ref|YP_134782.1|	-	0.0038	16.7	50.2	0.04	13.3	9.8	3.9	2	2	2	4	4	4	3	Intermediate	filament	protein
AAA_23	PF13476.1	gi|55376931|ref|YP_134782.1|	-	0.0053	17.0	31.2	4.6e+03	-2.3	21.5	4.3	1	1	0	1	1	0	0	AAA	domain
TPR_MLP1_2	PF07926.7	gi|55376931|ref|YP_134782.1|	-	0.0057	16.4	40.0	0.0079	15.9	6.7	4.7	2	2	2	4	4	4	2	TPR/MLP1/MLP2-like	protein
DivIC	PF04977.10	gi|55376931|ref|YP_134782.1|	-	0.011	15.2	53.4	0.057	12.9	0.9	8.2	3	2	5	8	8	8	0	Septum	formation	initiator
NPV_P10	PF05531.7	gi|55376931|ref|YP_134782.1|	-	0.011	15.9	30.1	0.92	9.8	0.7	7.1	3	3	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.6	gi|55376931|ref|YP_134782.1|	-	0.012	14.2	46.7	0.035	12.7	5.0	4.3	2	2	1	4	4	4	0	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.7	gi|55376931|ref|YP_134782.1|	-	0.015	15.0	23.5	1.9	8.3	3.6	5.3	1	1	4	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
CENP-F_leu_zip	PF10473.4	gi|55376931|ref|YP_134782.1|	-	0.017	14.9	54.5	0.12	12.1	7.6	4.9	2	2	2	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FUSC	PF04632.7	gi|55376931|ref|YP_134782.1|	-	0.018	13.5	25.0	0.28	9.5	7.4	2.4	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
BLOC1_2	PF10046.4	gi|55376931|ref|YP_134782.1|	-	0.021	14.9	32.2	5.6	7.1	1.0	6.4	2	2	3	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
MCPsignal	PF00015.16	gi|55376931|ref|YP_134782.1|	-	0.024	14.1	21.4	0.11	12.0	3.0	3.5	2	2	1	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
TMF_TATA_bd	PF12325.3	gi|55376931|ref|YP_134782.1|	-	0.029	14.0	54.3	0.039	13.6	8.1	4.5	2	2	2	4	4	4	0	TATA	element	modulatory	factor	1	TATA	binding
CALCOCO1	PF07888.6	gi|55376931|ref|YP_134782.1|	-	0.036	12.3	45.1	0.013	13.7	11.7	3.0	1	1	2	3	3	3	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Atg14	PF10186.4	gi|55376931|ref|YP_134782.1|	-	0.065	12.1	45.8	0.026	13.4	8.9	4.0	1	1	1	4	4	4	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Spectrin	PF00435.16	gi|55376931|ref|YP_134782.1|	-	0.076	13.3	38.4	0.28	11.4	3.3	5.7	2	2	3	5	5	5	0	Spectrin	repeat
Mnd1	PF03962.10	gi|55376931|ref|YP_134782.1|	-	0.15	11.7	45.0	1.2	8.7	3.7	5.2	1	1	3	4	4	4	0	Mnd1	family
Prefoldin	PF02996.12	gi|55376931|ref|YP_134782.1|	-	0.17	11.5	36.4	0.93	9.1	0.3	7.5	3	2	5	8	8	8	0	Prefoldin	subunit
Phage_GP20	PF06810.6	gi|55376931|ref|YP_134782.1|	-	0.26	10.7	33.3	0.082	12.3	2.9	4.3	3	2	1	4	4	3	0	Phage	minor	structural	protein	GP20
Laminin_I	PF06008.9	gi|55376931|ref|YP_134782.1|	-	0.29	10.4	31.9	0.28	10.4	10.0	3.1	2	1	1	3	3	3	0	Laminin	Domain	I
ATG16	PF08614.6	gi|55376931|ref|YP_134782.1|	-	0.31	10.8	53.6	1.1	9.0	12.9	4.1	1	1	3	4	4	4	0	Autophagy	protein	16	(ATG16)
Prefoldin_2	PF01920.15	gi|55376931|ref|YP_134782.1|	-	0.35	10.6	43.7	2	8.2	4.4	6.8	2	2	2	5	5	5	0	Prefoldin	subunit
DUF4200	PF13863.1	gi|55376931|ref|YP_134782.1|	-	0.36	10.7	49.7	0.95	9.4	4.8	5.6	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4200)
FlxA	PF14282.1	gi|55376931|ref|YP_134782.1|	-	0.41	10.6	27.3	0.37	10.7	1.3	4.8	2	2	2	4	4	4	0	FlxA-like	protein
Laminin_II	PF06009.7	gi|55376931|ref|YP_134782.1|	-	0.49	10.1	30.0	0.16	11.7	3.2	4.0	2	2	1	3	3	3	0	Laminin	Domain	II
OmpH	PF03938.9	gi|55376931|ref|YP_134782.1|	-	0.69	9.8	35.9	0.95	9.3	3.6	3.7	1	1	1	2	2	1	0	Outer	membrane	protein	(OmpH-like)
Peptidase_C6	PF00851.13	gi|55376931|ref|YP_134782.1|	-	0.92	8.0	9.7	0.049	12.2	1.8	2.2	2	1	0	2	2	2	0	Helper	component	proteinase
CCDC155	PF14662.1	gi|55376931|ref|YP_134782.1|	-	0.99	8.9	49.3	0.67	9.5	12.5	4.3	2	2	2	4	4	4	0	Coiled-coil	region	of	CCDC155
DUF972	PF06156.8	gi|55376931|ref|YP_134782.1|	-	1.4	9.3	33.8	2.7	8.3	2.6	5.5	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF972)
Cluap1	PF10234.4	gi|55376931|ref|YP_134782.1|	-	1.6	7.8	34.2	0.02	14.0	2.0	4.0	2	2	2	4	4	4	0	Clusterin-associated	protein-1
APG6	PF04111.7	gi|55376931|ref|YP_134782.1|	-	1.6	7.6	50.0	0.28	10.1	10.6	4.1	1	1	2	4	4	4	0	Autophagy	protein	Apg6
Fez1	PF06818.10	gi|55376931|ref|YP_134782.1|	-	1.8	8.5	42.1	6.9	6.6	13.2	3.1	2	2	0	2	2	2	0	Fez1
Occludin_ELL	PF07303.8	gi|55376931|ref|YP_134782.1|	-	2.9	8.6	22.1	2	9.1	0.3	4.8	3	2	1	4	4	3	0	Occludin	homology	domain
DUF2730	PF10805.3	gi|55376931|ref|YP_134782.1|	-	3.4	7.4	28.1	0.45	10.2	0.8	5.0	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF2730)
DUF812	PF05667.6	gi|55376931|ref|YP_134782.1|	-	3.9	5.8	41.1	4.3	5.7	9.3	3.7	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
COG5	PF10392.4	gi|55376931|ref|YP_134782.1|	-	4.6	7.2	26.5	0.061	13.2	4.3	4.4	2	2	3	5	5	5	0	Golgi	transport	complex	subunit	5
DUF1993	PF09351.5	gi|55376931|ref|YP_134782.1|	-	4.7	7.1	8.4	2.5	8.0	0.8	2.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1993)
Spc24	PF08286.6	gi|55376931|ref|YP_134782.1|	-	5.6	6.6	44.8	1.2	8.8	2.5	6.4	2	2	5	7	7	7	0	Spc24	subunit	of	Ndc80
FlaC_arch	PF05377.6	gi|55376931|ref|YP_134782.1|	-	6.2	6.8	34.8	3.7	7.5	1.9	7.5	5	3	4	9	9	8	0	Flagella	accessory	protein	C	(FlaC)
Zw10	PF06248.8	gi|55376931|ref|YP_134782.1|	-	6.6	4.7	19.4	0.22	9.6	3.7	2.5	2	1	0	2	2	2	0	Centromere/kinetochore	Zw10
DUF869	PF05911.6	gi|55376931|ref|YP_134782.1|	-	7.8	4.5	36.9	3.1	5.9	11.7	2.3	1	1	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF869)
Bacillus_HBL	PF05791.6	gi|55376931|ref|YP_134782.1|	-	8.3	5.7	22.8	3.8	6.8	2.7	4.5	3	1	1	4	4	4	0	Bacillus	haemolytic	enterotoxin	(HBL)
STAT_alpha	PF01017.15	gi|55376931|ref|YP_134782.1|	-	8.9	5.9	26.0	5.9	6.5	7.5	3.7	2	2	0	2	2	2	0	STAT	protein,	all-alpha	domain
Tropomyosin_1	PF12718.2	gi|55376931|ref|YP_134782.1|	-	9.9	6.0	61.2	0.041	13.7	8.7	4.4	2	2	2	4	4	4	0	Tropomyosin	like
PTS_EIIC	PF02378.13	gi|55376932|ref|YP_134783.1|	-	5.2e-23	81.3	40.0	5.2e-23	81.3	27.7	1.9	2	0	0	2	2	2	2	Phosphotransferase	system,	EIIC
PTS_EIIA_2	PF00359.17	gi|55376933|ref|YP_134784.1|	-	2.3e-35	121.4	0.0	2.7e-35	121.2	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
PTS-HPr	PF00381.14	gi|55376934|ref|YP_134785.1|	-	2.7e-23	81.6	0.1	3.3e-23	81.3	0.1	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
DUF1902	PF08972.6	gi|55376934|ref|YP_134785.1|	-	0.064	12.8	0.7	8.9	5.9	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1902)
PEP-utilizers_C	PF02896.13	gi|55376935|ref|YP_134786.1|	-	6.9e-104	346.8	0.0	9e-104	346.4	0.0	1.1	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilisers_N	PF05524.8	gi|55376935|ref|YP_134786.1|	-	1.1e-27	96.2	0.2	3.7e-27	94.5	0.2	2.0	1	0	0	1	1	1	1	PEP-utilising	enzyme,	N-terminal
PEP-utilizers	PF00391.18	gi|55376935|ref|YP_134786.1|	-	8.4e-25	86.1	0.6	1.9e-24	85.0	0.4	1.6	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.9	gi|55376935|ref|YP_134786.1|	-	0.001	18.0	1.1	0.0028	16.5	0.5	1.9	1	1	1	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
PTS_IIB	PF02302.12	gi|55376936|ref|YP_134787.1|	-	8.5e-17	61.4	1.4	1.2e-16	61.0	0.9	1.2	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Hepar_II_III	PF07940.8	gi|55376938|ref|YP_134789.1|	-	2.7e-25	88.8	0.3	6.2e-25	87.6	0.2	1.6	1	0	0	1	1	1	1	Heparinase	II/III-like	protein
Glycos_transf_1	PF00534.15	gi|55376939|ref|YP_134790.1|	-	8.7e-22	77.3	0.0	1.2e-21	76.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|55376939|ref|YP_134790.1|	-	2.8e-19	69.6	0.0	8.6e-19	68.0	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|55376939|ref|YP_134790.1|	-	4.3e-17	62.7	1.4	8e-17	61.8	1.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|55376939|ref|YP_134790.1|	-	1.8e-08	34.4	0.0	3.6e-08	33.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|55376939|ref|YP_134790.1|	-	5.4e-08	32.7	0.0	1e-07	31.8	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
DUF3515	PF12028.3	gi|55376940|ref|YP_134791.1|	-	0.06	12.5	0.3	0.057	12.6	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3515)
DDE_Tnp_1	PF01609.16	gi|55376941|ref|YP_134792.1|	-	3.4e-23	82.3	2.2	8e-23	81.0	1.5	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|55376941|ref|YP_134792.1|	-	0.00047	19.9	0.0	0.00073	19.3	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55376941|ref|YP_134792.1|	-	0.0032	17.4	0.8	0.0071	16.3	0.0	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|55376941|ref|YP_134792.1|	-	0.01	15.9	0.1	0.022	14.9	0.1	1.6	1	0	0	1	1	1	0	Transposase	DDE	domain
DUF1989	PF09347.5	gi|55376941|ref|YP_134792.1|	-	0.075	12.4	0.3	0.14	11.6	0.1	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1989)
rve	PF00665.21	gi|55376941|ref|YP_134792.1|	-	0.12	12.5	0.4	0.57	10.2	0.3	2.1	1	1	0	1	1	1	0	Integrase	core	domain