# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- TAT_signal PF10518.4 gi|55376580|ref|YP_134431.1| - 0.044 13.7 0.3 0.057 13.4 0.2 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Big_3_4 PF13754.1 gi|55376581|ref|YP_134432.1| - 6.4e-05 23.2 11.5 6.4e-05 23.2 8.0 4.3 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) Beta_helix PF13229.1 gi|55376581|ref|YP_134432.1| - 0.00034 20.3 6.5 0.0014 18.3 4.6 2.1 1 1 1 2 2 2 1 Right handed beta helix region Big_3_2 PF12245.3 gi|55376581|ref|YP_134432.1| - 0.0009 18.7 0.1 0.003 17.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|55376581|ref|YP_134432.1| - 0.012 15.7 0.1 0.038 14.1 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Sulfatase PF00884.18 gi|55376582|ref|YP_134433.1| - 7.5e-42 143.5 0.1 1e-41 143.1 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55376582|ref|YP_134433.1| - 2.8e-07 30.2 0.5 6.1e-06 25.7 0.1 2.5 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|55376582|ref|YP_134433.1| - 0.0027 17.1 0.0 0.0044 16.4 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Glycos_transf_2 PF00535.21 gi|55376584|ref|YP_134435.1| - 2.2e-30 105.5 0.0 3.3e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55376584|ref|YP_134435.1| - 2.6e-17 63.4 0.1 4.4e-17 62.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55376584|ref|YP_134435.1| - 5.4e-09 35.5 0.0 8.7e-09 34.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|55376584|ref|YP_134435.1| - 0.12 11.6 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family Beta_helix PF13229.1 gi|55376585|ref|YP_134436.1| - 1.5e-06 28.0 15.7 2.8e-05 23.9 6.8 2.2 2 0 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|55376585|ref|YP_134436.1| - 2.3e-05 24.6 6.2 2.3e-05 24.6 4.3 2.4 1 1 0 2 2 2 1 Pectate lyase superfamily protein EI24 PF07264.6 gi|55376586|ref|YP_134437.1| - 0.0051 16.2 11.1 0.0069 15.8 7.7 1.1 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) DUF4395 PF14340.1 gi|55376586|ref|YP_134437.1| - 0.018 15.1 4.0 0.025 14.6 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4395) Phtf-FEM1B_bdg PF12129.3 gi|55376586|ref|YP_134437.1| - 0.063 12.6 6.6 0.075 12.3 4.6 1.1 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor DUF4481 PF14800.1 gi|55376586|ref|YP_134437.1| - 0.26 10.1 4.2 0.35 9.7 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) DUF3043 PF11241.3 gi|55376586|ref|YP_134437.1| - 1.1 8.8 3.1 1.3 8.5 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) Ni_hydr_CYTB PF01292.15 gi|55376586|ref|YP_134437.1| - 1.4 8.3 12.8 0.79 9.0 3.9 2.0 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 DUF2868 PF11067.3 gi|55376586|ref|YP_134437.1| - 5.8 5.9 8.4 7.2 5.6 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) DUF4229 PF14012.1 gi|55376586|ref|YP_134437.1| - 8.7 6.3 14.5 1.8 8.5 7.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) DUF3810 PF12725.2 gi|55376586|ref|YP_134437.1| - 9 5.0 10.0 11 4.7 6.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) Glycos_transf_1 PF00534.15 gi|55376587|ref|YP_134438.1| - 1.7e-33 115.4 0.0 4.9e-33 113.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55376587|ref|YP_134438.1| - 1.3e-14 54.5 0.0 2.3e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55376587|ref|YP_134438.1| - 2.1e-09 37.5 0.0 4.3e-09 36.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|55376587|ref|YP_134438.1| - 0.087 12.5 0.0 0.59 9.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|55376588|ref|YP_134439.1| - 5.8e-36 123.4 0.0 9.7e-36 122.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55376588|ref|YP_134439.1| - 9.1e-20 71.1 0.0 1.6e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|55376588|ref|YP_134439.1| - 1.1e-19 70.8 0.0 2e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|55376588|ref|YP_134439.1| - 1.4e-11 44.8 0.2 2.7e-11 43.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|55376588|ref|YP_134439.1| - 2.5e-08 34.0 0.0 3.1e-07 30.5 0.0 2.6 3 0 0 3 3 3 1 Glycosyl transferases group 1 DUF1616 PF07760.6 gi|55376589|ref|YP_134440.1| - 2e-77 260.1 0.1 2.3e-77 259.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) TMEM125 PF15109.1 gi|55376589|ref|YP_134440.1| - 1.2 9.3 4.9 2.4 8.3 2.7 2.1 1 1 1 2 2 2 0 TMEM125 protein family DUF2910 PF11139.3 gi|55376589|ref|YP_134440.1| - 1.2 8.1 11.8 0.15 11.1 2.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2910) Epimerase_2 PF02350.14 gi|55376590|ref|YP_134441.1| - 1.3e-100 336.5 0.0 1.5e-100 336.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|55376590|ref|YP_134441.1| - 0.0075 16.4 0.6 0.075 13.1 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain DUF354 PF04007.7 gi|55376590|ref|YP_134441.1| - 0.046 12.5 0.0 0.074 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.1 gi|55376590|ref|YP_134441.1| - 0.09 12.4 0.0 0.28 10.8 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 UDPG_MGDP_dh PF00984.14 gi|55376591|ref|YP_134442.1| - 2.5e-21 75.7 0.0 4.1e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_N PF03721.9 gi|55376591|ref|YP_134442.1| - 3e-21 75.6 0.0 5.4e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|55376591|ref|YP_134442.1| - 5.4e-16 58.6 0.0 1.8e-15 57.0 0.0 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Glycos_transf_2 PF00535.21 gi|55376592|ref|YP_134443.1| - 4e-26 91.7 0.0 5.9e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55376592|ref|YP_134443.1| - 6.6e-10 39.1 0.0 1.2e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|55376592|ref|YP_134443.1| - 5.2e-06 26.6 0.1 0.00016 21.9 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|55376592|ref|YP_134443.1| - 0.0016 18.5 0.0 0.0057 16.7 0.0 1.8 2 0 0 2 2 2 1 MobA-like NTP transferase domain Epimerase PF01370.16 gi|55376593|ref|YP_134444.1| - 1.7e-62 210.9 0.0 2e-62 210.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55376593|ref|YP_134444.1| - 2.5e-22 78.9 0.0 3.3e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|55376593|ref|YP_134444.1| - 5e-21 74.8 0.2 3.4e-19 68.8 0.1 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|55376593|ref|YP_134444.1| - 2e-18 66.3 0.0 2.4e-18 66.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|55376593|ref|YP_134444.1| - 2.6e-13 49.5 0.1 7.6e-11 41.4 0.0 2.1 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|55376593|ref|YP_134444.1| - 2.5e-12 47.1 1.2 2.5e-12 47.1 0.9 1.7 2 1 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|55376593|ref|YP_134444.1| - 4.8e-09 36.3 0.7 1e-08 35.2 0.5 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|55376593|ref|YP_134444.1| - 2e-06 27.2 0.1 4.8e-06 26.0 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family Ldh_1_N PF00056.18 gi|55376593|ref|YP_134444.1| - 0.0012 18.7 0.1 0.036 13.8 0.1 2.2 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|55376593|ref|YP_134444.1| - 0.0021 18.0 0.5 0.0065 16.4 0.1 1.9 2 0 0 2 2 2 1 TrkA-N domain Epimerase_Csub PF13950.1 gi|55376593|ref|YP_134444.1| - 0.0043 16.9 0.0 0.008 16.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|55376593|ref|YP_134444.1| - 0.054 13.1 3.7 1.4 8.5 2.6 2.8 1 1 0 1 1 1 0 KR domain Varsurf_PPLC PF03490.8 gi|55376593|ref|YP_134444.1| - 0.33 10.6 2.3 0.37 10.4 0.1 2.1 2 0 0 2 2 2 0 Variant-surface-glycoprotein phospholipase C DUF4147 PF13660.1 gi|55376594|ref|YP_134445.1| - 9.4e-75 250.7 0.8 1.6e-74 250.0 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|55376594|ref|YP_134445.1| - 3.5e-24 84.9 4.2 1e-23 83.4 2.9 1.8 1 0 0 1 1 1 1 MOFRL family DUF2088 PF09861.4 gi|55376595|ref|YP_134446.1| - 2.5e-05 23.3 0.0 4.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF162 PF02589.10 gi|55376596|ref|YP_134447.1| - 1.2e-40 139.0 1.4 2.4e-40 138.0 1.0 1.5 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|55376596|ref|YP_134447.1| - 3.4e-09 36.5 4.0 6.7e-09 35.6 2.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55376596|ref|YP_134447.1| - 3.8e-08 33.6 5.6 5.7e-06 26.6 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|55376596|ref|YP_134447.1| - 6.7e-07 29.5 2.5 1.3e-06 28.6 1.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55376596|ref|YP_134447.1| - 1.8e-06 28.2 6.1 4.1e-06 27.0 4.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55376596|ref|YP_134447.1| - 1.3e-05 24.9 9.2 0.00072 19.3 7.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|55376596|ref|YP_134447.1| - 3.7e-05 23.3 12.4 5.7e-05 22.8 1.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|55376596|ref|YP_134447.1| - 7.7e-05 22.1 13.5 0.0001 21.7 2.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|55376596|ref|YP_134447.1| - 0.00014 22.0 10.3 0.0014 18.8 7.4 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55376596|ref|YP_134447.1| - 0.00028 20.6 9.4 0.0016 18.2 6.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55376596|ref|YP_134447.1| - 0.00065 19.4 11.8 0.0082 16.0 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain UL40 PF10682.4 gi|55376596|ref|YP_134447.1| - 0.0018 17.8 0.1 0.0031 17.0 0.1 1.3 1 0 0 1 1 1 1 Glycoprotein of human cytomegalovirus HHV-5 Fer4_4 PF12800.2 gi|55376596|ref|YP_134447.1| - 0.017 15.4 14.4 0.04 14.2 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|55376596|ref|YP_134447.1| - 0.04 13.5 2.8 0.13 11.8 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|55376596|ref|YP_134447.1| - 0.055 14.0 18.2 0.038 14.5 4.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55376596|ref|YP_134447.1| - 1.8 9.2 7.9 0.39 11.3 0.2 3.5 3 0 0 3 3 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|55376596|ref|YP_134447.1| - 2.4 8.9 12.3 0.75 10.5 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF162 PF02589.10 gi|55376597|ref|YP_134448.1| - 4.1e-23 81.8 1.9 1.5e-22 80.0 1.3 1.7 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 TraT PF05818.7 gi|55376597|ref|YP_134448.1| - 0.37 10.1 2.2 0.55 9.6 0.2 2.0 1 1 1 2 2 2 0 Enterobacterial TraT complement resistance protein HEAT_2 PF13646.1 gi|55376598|ref|YP_134449.1| - 9.7e-07 28.9 1.3 0.00088 19.5 0.0 2.2 1 1 1 2 2 2 2 HEAT repeats HEAT_EZ PF13513.1 gi|55376598|ref|YP_134449.1| - 2e-06 28.1 1.1 0.089 13.3 0.0 2.6 2 1 1 3 3 3 2 HEAT-like repeat HEAT PF02985.17 gi|55376598|ref|YP_134449.1| - 0.05 13.6 0.5 1 9.6 0.0 2.9 3 1 0 3 3 3 0 HEAT repeat Utp21 PF04192.7 gi|55376598|ref|YP_134449.1| - 0.064 12.3 0.0 0.086 11.9 0.0 1.2 1 0 0 1 1 1 0 Utp21 specific WD40 associated putative domain TPR_16 PF13432.1 gi|55376598|ref|YP_134449.1| - 0.59 10.8 4.9 4.5 8.0 0.8 2.6 2 1 1 3 3 3 0 Tetratricopeptide repeat IclR PF01614.13 gi|55376599|ref|YP_134450.1| - 1.9e-31 108.4 0.0 7.8e-30 103.2 0.0 2.2 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55376599|ref|YP_134450.1| - 1.4e-10 40.5 0.2 4.2e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|55376599|ref|YP_134450.1| - 1.6e-06 27.6 0.0 3.3e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55376599|ref|YP_134450.1| - 3.3e-05 23.4 0.1 7.9e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55376599|ref|YP_134450.1| - 3.4e-05 23.4 0.1 7.5e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|55376599|ref|YP_134450.1| - 0.00012 21.6 0.1 0.00058 19.4 0.0 2.1 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.2 gi|55376599|ref|YP_134450.1| - 0.00019 21.1 0.0 0.0005 19.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55376599|ref|YP_134450.1| - 0.0054 16.1 0.0 0.015 14.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|55376599|ref|YP_134450.1| - 0.0063 16.6 0.1 0.013 15.6 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|55376599|ref|YP_134450.1| - 0.01 15.7 0.2 0.032 14.1 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|55376599|ref|YP_134450.1| - 0.011 15.8 0.1 0.053 13.6 0.0 1.9 2 0 0 2 2 2 0 FaeA-like protein ANT PF03374.9 gi|55376599|ref|YP_134450.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_27 PF13463.1 gi|55376599|ref|YP_134450.1| - 0.045 14.0 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|55376599|ref|YP_134450.1| - 0.067 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|55376599|ref|YP_134450.1| - 0.12 11.9 0.0 0.38 10.3 0.0 1.8 2 0 0 2 2 2 0 LexA DNA binding domain ADH_N PF08240.7 gi|55376600|ref|YP_134451.1| - 3.4e-34 116.9 2.6 3.4e-34 116.9 1.8 2.1 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55376600|ref|YP_134451.1| - 5.1e-22 77.8 0.0 7.3e-22 77.2 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase F420_oxidored PF03807.12 gi|55376600|ref|YP_134451.1| - 0.00019 21.7 0.0 0.00036 20.8 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N_2 PF13602.1 gi|55376600|ref|YP_134451.1| - 0.0019 19.1 0.0 0.0039 18.0 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|55376600|ref|YP_134451.1| - 0.012 15.5 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain EF-hand_7 PF13499.1 gi|55376600|ref|YP_134451.1| - 0.052 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 EF-hand domain pair Pyr_redox PF00070.22 gi|55376600|ref|YP_134451.1| - 0.13 12.7 0.2 0.69 10.3 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SBP_bac_1 PF01547.20 gi|55376601|ref|YP_134452.1| - 5.2e-24 85.5 4.0 7.8e-24 84.9 2.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|55376601|ref|YP_134452.1| - 0.018 14.6 0.1 1.8 8.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55376601|ref|YP_134452.1| - 0.038 14.0 0.4 0.082 12.9 0.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|55376602|ref|YP_134453.1| - 1.8e-18 66.7 21.4 1.8e-18 66.7 14.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55376603|ref|YP_134454.1| - 2.7e-17 62.8 19.3 2.7e-17 62.8 13.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|55376604|ref|YP_134455.1| - 5.4e-32 110.9 0.0 1.1e-31 109.8 0.0 1.5 2 0 0 2 2 1 1 ABC transporter TOBE_2 PF08402.5 gi|55376604|ref|YP_134455.1| - 1.1e-10 41.3 0.2 3.5e-10 39.7 0.1 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|55376604|ref|YP_134455.1| - 2.1e-10 41.0 0.0 0.00048 20.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|55376604|ref|YP_134455.1| - 5.8e-05 23.1 0.4 0.0025 17.8 0.0 3.1 3 0 0 3 3 2 1 TOBE domain SMC_N PF02463.14 gi|55376604|ref|YP_134455.1| - 0.00021 20.5 0.1 0.00043 19.5 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|55376604|ref|YP_134455.1| - 0.00024 20.2 0.0 0.00048 19.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|55376604|ref|YP_134455.1| - 0.00028 21.7 0.0 0.00093 20.0 0.0 1.9 1 1 1 2 2 1 1 AAA domain AAA_15 PF13175.1 gi|55376604|ref|YP_134455.1| - 0.00032 19.8 0.0 0.02 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|55376604|ref|YP_134455.1| - 0.00037 19.9 0.0 0.00077 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|55376604|ref|YP_134455.1| - 0.00045 20.1 0.0 0.0022 17.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|55376604|ref|YP_134455.1| - 0.0022 18.0 0.0 0.0055 16.6 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55376604|ref|YP_134455.1| - 0.0033 17.5 0.0 0.0086 16.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain MobB PF03205.9 gi|55376604|ref|YP_134455.1| - 0.0043 16.7 0.0 0.0085 15.8 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|55376604|ref|YP_134455.1| - 0.0053 16.1 0.6 0.042 13.2 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|55376604|ref|YP_134455.1| - 0.0067 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_23 PF13476.1 gi|55376604|ref|YP_134455.1| - 0.015 15.5 0.0 0.031 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|55376604|ref|YP_134455.1| - 0.016 15.4 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|55376604|ref|YP_134455.1| - 0.024 14.8 0.0 0.11 12.7 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|55376604|ref|YP_134455.1| - 0.029 13.4 0.0 0.46 9.5 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.1 gi|55376604|ref|YP_134455.1| - 0.033 14.1 0.0 0.084 12.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain PQQ_2 PF13360.1 gi|55376604|ref|YP_134455.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 PQQ-like domain RNA_helicase PF00910.17 gi|55376604|ref|YP_134455.1| - 0.12 12.5 0.1 0.33 11.1 0.0 1.8 1 1 0 1 1 1 0 RNA helicase Aldolase_II PF00596.16 gi|55376605|ref|YP_134456.1| - 1.4e-48 164.9 0.2 1.7e-48 164.6 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain FGGY_C PF02782.11 gi|55376606|ref|YP_134457.1| - 8e-27 94.1 0.0 1.2e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.16 gi|55376606|ref|YP_134457.1| - 6.4e-18 64.9 0.0 9.1e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain adh_short PF00106.20 gi|55376607|ref|YP_134458.1| - 9.6e-35 119.9 1.6 1.3e-34 119.5 1.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55376607|ref|YP_134458.1| - 2.3e-34 119.2 0.1 2.8e-34 118.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55376607|ref|YP_134458.1| - 1.8e-13 50.5 1.1 2.8e-13 49.9 0.8 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|55376607|ref|YP_134458.1| - 0.00021 21.3 0.8 0.00035 20.6 0.6 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|55376607|ref|YP_134458.1| - 0.00069 19.1 0.2 0.0009 18.7 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|55376607|ref|YP_134458.1| - 0.032 12.9 0.4 0.041 12.5 0.3 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Choline_kin_N PF04428.9 gi|55376607|ref|YP_134458.1| - 0.06 12.8 0.0 0.3 10.5 0.0 2.1 2 0 0 2 2 2 0 Choline kinase N terminus MR_MLE_C PF13378.1 gi|55376608|ref|YP_134459.1| - 5.5e-32 110.0 0.0 1.1e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55376608|ref|YP_134459.1| - 1.9e-21 76.1 0.0 4.1e-21 75.1 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|55376608|ref|YP_134459.1| - 2.1e-13 50.5 0.1 5.3e-13 49.2 0.1 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ADH_zinc_N PF00107.21 gi|55376609|ref|YP_134460.1| - 2.4e-32 111.1 0.7 3.5e-32 110.6 0.5 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|55376609|ref|YP_134460.1| - 4.3e-32 110.1 0.2 7.8e-32 109.2 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|55376609|ref|YP_134460.1| - 0.00013 22.8 1.0 0.00025 21.9 0.7 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.11 gi|55376609|ref|YP_134460.1| - 0.012 15.9 1.3 0.021 15.2 0.9 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|55376609|ref|YP_134460.1| - 0.019 14.1 0.0 0.033 13.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Tsp45I PF06300.7 gi|55376609|ref|YP_134460.1| - 0.13 11.6 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Tsp45I type II restriction enzyme Bac_luciferase PF00296.15 gi|55376610|ref|YP_134461.1| - 7e-33 114.0 3.4 8e-33 113.8 2.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF2309 PF10070.4 gi|55376611|ref|YP_134462.1| - 1.7e-256 853.2 0.0 3.4e-256 852.2 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Oxidored_q1 PF00361.15 gi|55376612|ref|YP_134463.1| - 5.4e-31 107.8 11.3 5.4e-31 107.8 7.9 1.9 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|55376612|ref|YP_134463.1| - 0.00023 20.6 0.1 0.00063 19.2 0.1 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HTH_24 PF13412.1 gi|55376613|ref|YP_134464.1| - 1.9e-13 49.5 0.2 2.8e-13 49.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|55376613|ref|YP_134464.1| - 5.7e-11 41.7 0.8 1.2e-10 40.7 0.6 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|55376613|ref|YP_134464.1| - 8.4e-06 25.4 0.0 1.9e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|55376613|ref|YP_134464.1| - 1e-05 25.0 0.0 2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|55376613|ref|YP_134464.1| - 0.0001 21.7 0.1 0.0042 16.5 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|55376613|ref|YP_134464.1| - 0.00018 21.0 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|55376613|ref|YP_134464.1| - 0.00021 20.8 0.0 0.00038 19.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|55376613|ref|YP_134464.1| - 0.00046 20.2 0.0 0.0011 19.0 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|55376613|ref|YP_134464.1| - 0.00057 19.4 0.0 0.00098 18.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|55376613|ref|YP_134464.1| - 0.0012 18.7 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|55376613|ref|YP_134464.1| - 0.0014 18.8 0.1 0.0087 16.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|55376613|ref|YP_134464.1| - 0.0026 17.1 0.0 0.0048 16.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.6 gi|55376613|ref|YP_134464.1| - 0.024 14.3 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.1 gi|55376613|ref|YP_134464.1| - 0.037 13.1 0.1 0.082 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|55376613|ref|YP_134464.1| - 0.057 13.1 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.1 gi|55376613|ref|YP_134464.1| - 0.15 11.7 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Peripla_BP_2 PF01497.13 gi|55376614|ref|YP_134465.1| - 1.4e-13 50.5 0.0 2e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|55376614|ref|YP_134465.1| - 0.023 14.6 0.0 0.057 13.4 0.0 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.13 gi|55376615|ref|YP_134466.1| - 1.4e-19 70.2 0.0 2.5e-19 69.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein YqgF PF14639.1 gi|55376615|ref|YP_134466.1| - 0.038 13.5 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 Peripla_BP_2 PF01497.13 gi|55376616|ref|YP_134467.1| - 3.3e-17 62.4 0.0 1.2e-16 60.5 0.0 1.8 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|55376616|ref|YP_134467.1| - 0.024 14.6 0.7 0.048 13.6 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Sugar_tr PF00083.19 gi|55376617|ref|YP_134468.1| - 9.6e-125 416.6 25.1 1.1e-124 416.4 17.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|55376617|ref|YP_134468.1| - 1.6e-38 132.3 66.7 1.3e-29 103.0 22.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|55376617|ref|YP_134468.1| - 2.1e-07 29.5 3.4 2.1e-07 29.5 2.4 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_2 PF13347.1 gi|55376617|ref|YP_134468.1| - 0.011 14.1 35.9 0.013 13.9 2.9 3.9 3 1 1 4 4 4 0 MFS/sugar transport protein MFS_3 PF05977.8 gi|55376617|ref|YP_134468.1| - 0.05 11.7 18.9 0.0073 14.4 5.4 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector Bac_export_3 PF01313.14 gi|55376617|ref|YP_134468.1| - 0.09 12.4 7.9 0.065 12.9 1.4 3.8 2 1 0 2 2 2 0 Bacterial export proteins, family 3 MFS_1_like PF12832.2 gi|55376617|ref|YP_134468.1| - 0.14 11.9 4.6 2.4 7.9 0.1 3.3 3 0 0 3 3 3 0 MFS_1 like family Fructosamin_kin PF03881.9 gi|55376618|ref|YP_134469.1| - 4.4e-43 147.3 0.0 5.9e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.18 gi|55376618|ref|YP_134469.1| - 1.2e-13 51.4 6.4 1.6e-13 50.9 4.4 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.9 gi|55376618|ref|YP_134469.1| - 0.034 13.2 0.3 0.083 12.0 0.0 1.7 2 0 0 2 2 2 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase HTH_20 PF12840.2 gi|55376619|ref|YP_134470.1| - 2.7e-11 43.1 0.1 3.7e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|55376619|ref|YP_134470.1| - 1.7e-07 30.8 0.0 3.1e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|55376619|ref|YP_134470.1| - 7.3e-07 28.4 0.0 1.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55376619|ref|YP_134470.1| - 1.3e-06 27.9 0.0 2.8e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|55376619|ref|YP_134470.1| - 8.2e-05 22.8 0.0 0.00014 22.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|55376619|ref|YP_134470.1| - 0.00098 18.9 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|55376619|ref|YP_134470.1| - 0.0026 17.8 0.0 0.0035 17.4 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) TrmB PF01978.14 gi|55376619|ref|YP_134470.1| - 0.0049 16.5 0.0 0.0086 15.7 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|55376619|ref|YP_134470.1| - 0.0099 15.5 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|55376620|ref|YP_134471.1| - 7.9e-07 28.6 0.5 2.3e-06 27.1 0.0 2.0 2 1 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|55376620|ref|YP_134471.1| - 4e-06 26.3 0.0 1.1e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|55376620|ref|YP_134471.1| - 0.00027 20.5 0.0 0.00056 19.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|55376620|ref|YP_134471.1| - 0.00064 19.3 0.0 0.0014 18.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55376620|ref|YP_134471.1| - 0.0012 19.1 0.0 0.0059 16.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain RP-C PF03428.8 gi|55376620|ref|YP_134471.1| - 0.0063 15.9 0.4 0.034 13.5 0.0 2.2 3 0 0 3 3 3 1 Replication protein C N-terminal domain Sulfolobus_pRN PF05584.6 gi|55376620|ref|YP_134471.1| - 0.0097 15.8 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_20 PF12840.2 gi|55376620|ref|YP_134471.1| - 0.01 15.6 0.0 0.026 14.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3398 PF11878.3 gi|55376620|ref|YP_134471.1| - 0.011 15.4 0.2 0.018 14.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3398) Rrf2 PF02082.15 gi|55376620|ref|YP_134471.1| - 0.036 14.1 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.16 gi|55376620|ref|YP_134471.1| - 0.043 13.2 0.0 0.21 11.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|55376620|ref|YP_134471.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF2842 PF11003.3 gi|55376623|ref|YP_134474.1| - 0.0013 18.5 2.0 0.014 15.2 1.4 2.8 1 0 0 1 1 1 1 Protein of unknown function (DUF2842) TcpE PF12648.2 gi|55376623|ref|YP_134474.1| - 5.5 7.1 6.6 0.52 10.4 0.2 2.5 3 0 0 3 3 3 0 TcpE family ABC_tran PF00005.22 gi|55376624|ref|YP_134475.1| - 2.1e-24 86.3 0.0 3e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376624|ref|YP_134475.1| - 4.5e-14 53.0 0.0 4.8e-09 36.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|55376624|ref|YP_134475.1| - 4.1e-06 26.1 0.0 0.00012 21.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|55376624|ref|YP_134475.1| - 0.001 17.9 0.1 0.0015 17.3 0.1 1.2 1 0 0 1 1 1 1 ArgK protein SMC_N PF02463.14 gi|55376624|ref|YP_134475.1| - 0.0011 18.1 0.2 0.62 9.2 0.0 2.4 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|55376624|ref|YP_134475.1| - 0.0055 16.1 0.0 0.96 8.8 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|55376624|ref|YP_134475.1| - 0.0061 16.9 0.1 0.0091 16.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|55376624|ref|YP_134475.1| - 0.015 15.4 0.4 1 9.5 0.1 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF148 PF02520.12 gi|55376624|ref|YP_134475.1| - 0.025 14.3 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 AAA_30 PF13604.1 gi|55376624|ref|YP_134475.1| - 0.026 14.1 0.1 0.17 11.4 0.0 2.1 2 1 1 3 3 3 0 AAA domain AAA_29 PF13555.1 gi|55376624|ref|YP_134475.1| - 0.027 13.9 0.2 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|55376624|ref|YP_134475.1| - 0.051 12.0 0.0 2.7 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|55376624|ref|YP_134475.1| - 0.068 13.1 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|55376624|ref|YP_134475.1| - 0.075 12.4 0.3 3 7.2 0.1 2.5 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.17 gi|55376624|ref|YP_134475.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|55376624|ref|YP_134475.1| - 0.13 11.7 0.1 0.32 10.4 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein zf-C2HC5 PF06221.8 gi|55376625|ref|YP_134476.1| - 0.24 11.1 1.1 0.45 10.3 0.8 1.4 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Nitroreductase PF00881.19 gi|55376626|ref|YP_134477.1| - 1e-21 77.4 0.0 1.2e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family PepSY PF03413.14 gi|55376628|ref|YP_134479.1| - 0.01 16.4 2.0 0.088 13.4 0.0 2.8 3 0 0 3 3 3 1 Peptidase propeptide and YPEB domain Aurora-A_bind PF09041.5 gi|55376628|ref|YP_134479.1| - 0.11 12.2 0.5 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Aurora-A binding DAP_C PF07932.7 gi|55376629|ref|YP_134480.1| - 0.059 13.5 0.0 6.2 7.0 0.0 2.5 1 1 1 2 2 2 0 D-aminopeptidase, domain C DsbD PF02683.10 gi|55376630|ref|YP_134481.1| - 3.4e-12 46.4 15.2 4.8e-12 45.9 10.6 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.5 gi|55376631|ref|YP_134482.1| - 5.8e-08 32.4 0.0 6.9e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|55376631|ref|YP_134482.1| - 6.9e-08 32.5 0.0 9.7e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|55376631|ref|YP_134482.1| - 2e-06 27.4 0.0 2.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|55376631|ref|YP_134482.1| - 6.1e-05 22.6 0.0 0.0008 19.0 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|55376631|ref|YP_134482.1| - 0.001 19.2 0.0 0.0014 18.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain SCO1-SenC PF02630.9 gi|55376632|ref|YP_134483.1| - 5e-12 45.7 0.0 6.7e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.4 gi|55376632|ref|YP_134483.1| - 0.032 14.2 3.5 0.058 13.4 2.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AhpC-TSA PF00578.16 gi|55376632|ref|YP_134483.1| - 0.042 13.5 0.0 0.48 10.1 0.0 2.4 1 1 0 1 1 1 0 AhpC/TSA family FmdA_AmdA PF03069.10 gi|161723228|ref|YP_134484.2| - 2.9e-132 440.8 0.0 4.5e-132 440.2 0.0 1.2 1 0 0 1 1 1 1 Acetamidase/Formamidase family Cpn60_TCP1 PF00118.19 gi|55376634|ref|YP_134485.1| - 5.4e-135 450.7 0.0 6.1e-135 450.5 0.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.12 gi|55376634|ref|YP_134485.1| - 0.032 14.2 1.2 0.073 13.1 0.2 2.1 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Usp PF00582.21 gi|55376635|ref|YP_134486.1| - 1.6e-08 34.8 0.7 4.9e-06 26.7 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family AA_permease_2 PF13520.1 gi|55376636|ref|YP_134487.1| - 1.1e-45 156.0 40.1 1.3e-45 155.7 27.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|55376636|ref|YP_134487.1| - 2.7e-44 151.2 41.0 3.4e-44 150.9 28.5 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|55376636|ref|YP_134487.1| - 0.21 10.1 17.9 0.13 10.9 10.0 2.3 2 1 0 2 2 2 0 Spore germination protein AA_permease_C PF13906.1 gi|55376636|ref|YP_134487.1| - 7.6 6.4 15.2 0.095 12.5 3.8 3.0 3 0 0 3 3 3 0 C-terminus of AA_permease Prok-JAB PF14464.1 gi|55376637|ref|YP_134488.1| - 1.1e-07 31.3 0.2 1.9e-07 30.6 0.2 1.3 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain SSF PF00474.12 gi|55376638|ref|YP_134489.1| - 1e-27 96.8 36.4 1.5e-26 92.9 19.2 2.4 2 1 0 2 2 2 2 Sodium:solute symporter family Antitoxin-MazE PF04014.13 gi|55376639|ref|YP_134490.1| - 4.9e-10 38.9 0.4 9.8e-10 37.9 0.0 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|55376639|ref|YP_134490.1| - 4.3e-09 36.6 0.6 3.4e-06 27.3 0.0 2.6 2 0 0 2 2 2 2 PhoU domain Arginase PF00491.16 gi|55376640|ref|YP_134491.1| - 3.3e-72 243.1 0.2 4.1e-72 242.7 0.2 1.0 1 0 0 1 1 1 1 Arginase family Methyltransf_11 PF08241.7 gi|55376641|ref|YP_134492.1| - 8.3e-09 35.8 0.0 1.6e-08 34.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55376641|ref|YP_134492.1| - 7.6e-05 22.4 0.0 9.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55376641|ref|YP_134492.1| - 0.0015 18.9 0.0 0.0025 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|55376641|ref|YP_134492.1| - 0.012 15.0 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.1 gi|55376641|ref|YP_134492.1| - 0.012 15.2 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55376641|ref|YP_134492.1| - 0.024 14.9 0.1 0.055 13.8 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55376641|ref|YP_134492.1| - 0.026 15.1 0.1 0.043 14.3 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|55376641|ref|YP_134492.1| - 0.038 12.3 0.0 0.047 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase DUF429 PF04250.8 gi|55376641|ref|YP_134492.1| - 0.069 12.4 0.2 0.16 11.2 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF429) Gly-zipper_OmpA PF13436.1 gi|55376642|ref|YP_134493.1| - 0.0029 17.2 5.5 0.0047 16.5 3.8 1.4 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain TraT PF05818.7 gi|55376642|ref|YP_134493.1| - 0.0046 16.4 0.4 0.0046 16.4 0.3 1.1 1 0 0 1 1 1 1 Enterobacterial TraT complement resistance protein Glug PF07581.7 gi|55376642|ref|YP_134493.1| - 0.31 11.3 10.5 2.4 8.5 1.6 2.7 2 0 0 2 2 2 0 The GLUG motif DUF2076 PF09849.4 gi|55376642|ref|YP_134493.1| - 1.4 8.8 11.5 1.6 8.7 7.9 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Gly-zipper_YMGG PF13441.1 gi|55376642|ref|YP_134493.1| - 1.5 8.4 14.6 6 6.4 10.1 1.9 1 1 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|55376642|ref|YP_134493.1| - 4.3 7.0 17.2 8.2 6.1 10.8 2.2 1 1 1 2 2 2 0 Glycine zipper TRAP_alpha PF03896.11 gi|55376642|ref|YP_134493.1| - 5.9 5.8 7.1 7.3 5.4 4.9 1.2 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Rick_17kDa_Anti PF05433.10 gi|55376642|ref|YP_134493.1| - 7.5 6.3 16.6 1.1e+02 2.6 11.5 2.3 1 1 0 1 1 1 0 Glycine zipper 2TM domain adh_short PF00106.20 gi|55376643|ref|YP_134494.1| - 7.6e-18 64.9 7.0 1.7e-17 63.8 4.9 1.6 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55376643|ref|YP_134494.1| - 8.4e-09 35.3 1.4 1.4e-08 34.6 1.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55376643|ref|YP_134494.1| - 0.00016 21.1 0.0 0.00021 20.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.21 gi|55376643|ref|YP_134494.1| - 0.00025 20.5 0.7 0.17 11.4 0.4 2.7 2 1 0 2 2 2 2 Zinc-binding dehydrogenase adh_short PF00106.20 gi|55376644|ref|YP_134495.1| - 3e-17 63.0 0.3 4.3e-17 62.5 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|55376644|ref|YP_134495.1| - 6.7e-17 62.0 0.0 1.6e-15 57.5 0.0 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|55376644|ref|YP_134495.1| - 4.6e-06 26.4 0.0 6.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55376644|ref|YP_134495.1| - 0.11 11.8 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GSDH PF07995.6 gi|55376645|ref|YP_134496.1| - 1.7e-109 365.9 0.0 2e-109 365.7 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.4 gi|55376645|ref|YP_134496.1| - 0.02 14.8 1.9 0.046 13.7 1.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence RNase_H PF00075.19 gi|55376649|ref|YP_134500.1| - 3.9e-11 43.4 0.0 5.6e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|55376649|ref|YP_134500.1| - 2.7e-06 27.0 0.0 4.1e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like Pyr_redox_2 PF07992.9 gi|55376650|ref|YP_134501.1| - 1.8e-21 76.9 0.0 2.9e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|55376650|ref|YP_134501.1| - 1.9e-08 34.6 0.1 0.00077 19.5 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55376650|ref|YP_134501.1| - 4.9e-08 32.2 3.6 0.0003 19.8 0.7 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|55376650|ref|YP_134501.1| - 8.8e-06 25.0 1.0 5.6e-05 22.4 0.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55376650|ref|YP_134501.1| - 9.7e-06 24.6 3.7 0.00022 20.2 0.5 2.7 2 1 1 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.14 gi|55376650|ref|YP_134501.1| - 5.2e-05 22.4 0.6 8.3e-05 21.7 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|55376650|ref|YP_134501.1| - 0.00013 20.6 0.2 0.0078 14.7 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|55376650|ref|YP_134501.1| - 0.00018 21.8 0.1 0.059 13.7 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|55376650|ref|YP_134501.1| - 0.00059 19.0 0.1 0.0011 18.1 0.1 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|55376650|ref|YP_134501.1| - 0.0007 18.5 1.3 0.0011 17.8 0.5 1.6 1 1 1 2 2 2 1 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|55376650|ref|YP_134501.1| - 0.0013 17.7 0.0 0.0061 15.5 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|55376650|ref|YP_134501.1| - 0.0064 16.4 0.3 0.015 15.3 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|55376650|ref|YP_134501.1| - 0.0093 15.7 1.5 0.21 11.3 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|55376650|ref|YP_134501.1| - 0.12 11.2 0.2 0.31 9.9 0.2 1.6 1 1 1 2 2 2 0 Lycopene cyclase protein NmrA PF05368.8 gi|55376650|ref|YP_134501.1| - 0.16 11.1 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 NmrA-like family PIN_2 PF10130.4 gi|55376651|ref|YP_134502.1| - 0.012 15.6 0.3 0.016 15.2 0.2 1.4 1 1 0 1 1 1 0 PIN domain P16-Arc PF04699.9 gi|55376651|ref|YP_134502.1| - 0.068 13.1 0.1 0.087 12.8 0.0 1.2 1 0 0 1 1 1 0 ARP2/3 complex 16 kDa subunit (p16-Arc) Sulfatase PF00884.18 gi|55376652|ref|YP_134503.1| - 3.5e-32 111.8 0.0 5e-32 111.3 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55376652|ref|YP_134503.1| - 1.5e-09 37.7 1.9 0.00021 20.7 0.1 2.3 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|55376652|ref|YP_134503.1| - 0.00094 17.7 0.0 0.0013 17.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|55376652|ref|YP_134503.1| - 0.0049 15.7 0.0 0.0082 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Phosphoesterase PF04185.9 gi|55376652|ref|YP_134503.1| - 0.016 14.4 0.1 1 8.4 0.0 2.2 2 0 0 2 2 2 0 Phosphoesterase family Alk_phosphatase PF00245.15 gi|55376652|ref|YP_134503.1| - 0.033 12.8 0.0 0.15 10.7 0.0 2.0 2 0 0 2 2 2 0 Alkaline phosphatase Usp PF00582.21 gi|55376653|ref|YP_134504.1| - 4.9e-27 94.8 0.5 5.5e-27 94.6 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family RC-P840_PscD PF10657.4 gi|55376653|ref|YP_134504.1| - 0.017 14.9 0.1 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD Pyr_redox PF00070.22 gi|55376653|ref|YP_134504.1| - 0.039 14.3 0.2 0.25 11.7 0.0 2.2 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase MCPsignal PF00015.16 gi|55376654|ref|YP_134505.1| - 7.6e-44 149.7 69.7 3.9e-42 144.1 24.6 3.7 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|55376654|ref|YP_134505.1| - 6.9e-06 26.1 0.3 6.9e-06 26.1 0.2 4.2 4 1 1 5 5 5 1 HAMP domain DUF2570 PF10828.3 gi|55376654|ref|YP_134505.1| - 0.0081 15.7 4.4 0.0081 15.7 3.1 3.9 3 2 1 4 4 4 1 Protein of unknown function (DUF2570) DUF948 PF06103.6 gi|55376654|ref|YP_134505.1| - 0.41 10.5 35.6 2.2 8.2 1.0 6.1 3 3 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Cauli_AT PF03233.8 gi|55376654|ref|YP_134505.1| - 0.59 9.8 18.4 10 5.8 2.4 4.4 4 1 0 4 4 4 0 Aphid transmission protein IFT57 PF10498.4 gi|55376654|ref|YP_134505.1| - 3.8 6.1 30.4 0.12 11.1 8.7 3.3 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 IncA PF04156.9 gi|55376654|ref|YP_134505.1| - 4.1 6.9 37.5 3 7.3 9.9 4.1 2 2 0 3 3 3 0 IncA protein Laminin_II PF06009.7 gi|55376654|ref|YP_134505.1| - 5.2 6.8 48.0 0.14 11.9 1.3 6.0 3 3 2 6 6 6 0 Laminin Domain II COG2 PF06148.6 gi|55376654|ref|YP_134505.1| - 8.3 6.2 37.4 16 5.3 0.9 5.8 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 NPV_P10 PF05531.7 gi|55376654|ref|YP_134505.1| - 9.6 6.5 34.8 9.2 6.6 1.7 6.6 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein HMA PF00403.21 gi|55376655|ref|YP_134506.1| - 5e-19 68.1 0.5 5.5e-19 68.0 0.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain BOFC_N PF08977.5 gi|55376655|ref|YP_134506.1| - 0.033 14.0 0.5 0.088 12.6 0.0 1.7 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal MTH865 PF07747.6 gi|55376656|ref|YP_134507.1| - 3.6e-16 58.5 0.0 3.9e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 MTH865-like family ANTH PF07651.11 gi|55376657|ref|YP_134508.1| - 0.099 11.3 0.1 0.11 11.2 0.1 1.0 1 0 0 1 1 1 0 ANTH domain DUF2795 PF11387.3 gi|55376657|ref|YP_134508.1| - 0.13 12.1 0.3 0.25 11.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) PQQ_2 PF13360.1 gi|55376658|ref|YP_134509.1| - 2.2e-37 128.8 26.6 1.1e-16 61.0 3.5 3.5 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.1 gi|55376658|ref|YP_134509.1| - 1.6e-13 50.4 40.4 0.00085 19.5 1.1 7.5 8 1 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|55376658|ref|YP_134509.1| - 1.3e-05 24.4 11.7 3.4 7.3 0.0 7.0 7 0 0 7 7 7 2 PQQ enzyme repeat CytB6-F_Fe-S PF08802.5 gi|55376658|ref|YP_134509.1| - 0.026 14.4 0.1 0.11 12.5 0.1 2.1 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit Tetraspannin PF00335.15 gi|55376659|ref|YP_134510.1| - 6.5 5.9 6.5 13 4.9 4.5 1.6 1 1 0 1 1 1 0 Tetraspanin family DUF393 PF04134.7 gi|55376661|ref|YP_134512.1| - 1e-06 29.8 0.0 1.5e-06 29.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF393 Thioredoxin_2 PF13098.1 gi|55376661|ref|YP_134512.1| - 0.15 12.3 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain MarR_2 PF12802.2 gi|55376662|ref|YP_134513.1| - 0.005 16.4 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|55376662|ref|YP_134513.1| - 0.0083 16.2 0.0 0.01 15.9 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.14 gi|55376662|ref|YP_134513.1| - 0.019 14.8 0.0 0.023 14.6 0.0 1.1 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|55376662|ref|YP_134513.1| - 0.061 12.9 0.4 0.17 11.4 0.0 1.8 1 1 1 2 2 2 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|55376662|ref|YP_134513.1| - 0.08 12.6 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pyridox_ox_2 PF12900.2 gi|55376663|ref|YP_134514.1| - 1.8e-16 60.2 0.0 2e-16 60.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|55376663|ref|YP_134514.1| - 0.0026 17.7 0.0 0.0068 16.3 0.0 1.7 2 0 0 2 2 2 1 Pyridoxamine 5'-phosphate oxidase Creatininase PF02633.9 gi|55376664|ref|YP_134515.1| - 4e-66 222.5 1.0 4.5e-66 222.3 0.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF457 PF04307.9 gi|55376665|ref|YP_134516.1| - 0.031 13.6 14.5 0.051 12.9 10.0 1.3 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) CDP-OH_P_transf PF01066.16 gi|55376666|ref|YP_134517.1| - 2.2e-11 43.9 3.8 2.2e-11 43.9 2.7 1.8 3 0 0 3 3 3 1 CDP-alcohol phosphatidyltransferase Aldo_ket_red PF00248.16 gi|55376668|ref|YP_134519.1| - 3.1e-46 157.4 0.0 4.8e-46 156.8 0.0 1.3 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|55376668|ref|YP_134519.1| - 2.2e-16 60.4 0.4 3.1e-15 56.7 0.2 2.7 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|55376668|ref|YP_134519.1| - 5.4e-07 30.0 1.2 1.6e-06 28.5 0.8 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|55376668|ref|YP_134519.1| - 0.0004 20.1 0.0 0.00086 19.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Saccharop_dh PF03435.13 gi|55376668|ref|YP_134519.1| - 0.057 12.3 0.5 0.25 10.2 0.3 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase Sulfatase PF00884.18 gi|55376669|ref|YP_134520.1| - 0.0022 17.2 0.0 0.0034 16.6 0.0 1.3 1 0 0 1 1 1 1 Sulfatase ADH_zinc_N PF00107.21 gi|55376670|ref|YP_134521.1| - 8.8e-06 25.2 0.0 3.7e-05 23.2 0.0 2.0 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|55376670|ref|YP_134521.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|55376670|ref|YP_134521.1| - 0.025 15.4 0.3 0.053 14.4 0.0 1.6 2 0 0 2 2 2 0 Zinc-binding dehydrogenase PTPS PF01242.14 gi|55376671|ref|YP_134522.1| - 6.3e-09 35.5 0.2 6.6e-09 35.4 0.1 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Glycos_transf_1 PF00534.15 gi|55376672|ref|YP_134523.1| - 2.1e-34 118.3 0.0 3.1e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55376672|ref|YP_134523.1| - 1e-18 67.8 0.1 1.9e-18 66.8 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55376672|ref|YP_134523.1| - 1.6e-10 41.1 0.1 3.6e-10 39.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55376672|ref|YP_134523.1| - 9e-09 35.6 3.1 9e-09 35.6 2.2 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55376672|ref|YP_134523.1| - 2.8e-06 27.1 0.0 6.7e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Phage_T7_Capsid PF05396.6 gi|55376672|ref|YP_134523.1| - 0.075 13.1 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Phage T7 capsid assembly protein Methyltransf_18 PF12847.2 gi|55376673|ref|YP_134524.1| - 9.9e-07 29.3 0.0 2e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55376673|ref|YP_134524.1| - 2.8e-05 24.3 0.0 9.2e-05 22.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55376673|ref|YP_134524.1| - 0.00012 21.8 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55376673|ref|YP_134524.1| - 0.00059 19.8 1.3 0.0029 17.6 0.1 2.2 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55376673|ref|YP_134524.1| - 0.0018 18.7 0.0 0.012 16.0 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55376673|ref|YP_134524.1| - 0.075 12.6 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain MaoC_dehydratas PF01575.14 gi|55376674|ref|YP_134525.1| - 1.5e-16 59.8 0.0 1.9e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|55376674|ref|YP_134525.1| - 7.2e-08 32.2 0.0 1.9e-07 30.9 0.0 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase FUR PF01475.14 gi|55376675|ref|YP_134526.1| - 0.053 13.4 0.0 0.053 13.4 0.0 1.0 1 0 0 1 1 1 0 Ferric uptake regulator family Ribosomal_L36 PF00444.13 gi|55376675|ref|YP_134526.1| - 0.087 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L36 Laps PF10169.4 gi|55376675|ref|YP_134526.1| - 0.11 12.6 0.1 0.12 12.5 0.0 1.0 1 0 0 1 1 1 0 Learning-associated protein TOMM6 PF15184.1 gi|55376677|ref|YP_134528.1| - 0.0073 15.6 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 Mitochondrial import receptor subunit TOM6 homolog MreB_Mbl PF06723.8 gi|55376678|ref|YP_134529.1| - 2.8e-06 26.1 0.0 0.0092 14.6 0.0 2.2 2 0 0 2 2 2 2 MreB/Mbl protein DUF2387 PF09526.5 gi|55376679|ref|YP_134530.1| - 0.013 15.4 1.0 0.017 15.0 0.1 1.7 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|55376679|ref|YP_134530.1| - 0.016 14.5 0.9 0.045 13.0 0.6 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|55376679|ref|YP_134530.1| - 0.048 13.4 0.5 0.097 12.4 0.4 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|55376679|ref|YP_134530.1| - 0.057 12.6 1.3 0.11 11.7 0.9 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|55376679|ref|YP_134530.1| - 0.083 13.2 0.3 0.21 11.9 0.2 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|55376679|ref|YP_134530.1| - 0.13 12.0 0.6 0.25 11.1 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon DUF1657 PF07870.6 gi|55376679|ref|YP_134530.1| - 0.82 9.3 0.1 0.82 9.3 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1657) zinc_ribbon_2 PF13240.1 gi|55376681|ref|YP_134532.1| - 0.016 14.6 5.3 0.04 13.4 1.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Utp14 PF04615.8 gi|55376681|ref|YP_134532.1| - 0.052 11.7 5.5 0.057 11.5 3.8 1.0 1 0 0 1 1 1 0 Utp14 protein HypA PF01155.14 gi|55376681|ref|YP_134532.1| - 0.094 12.4 1.2 0.69 9.6 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1660 PF07874.6 gi|55376681|ref|YP_134532.1| - 0.19 12.0 4.5 1.1 9.6 0.6 3.1 2 1 0 2 2 2 0 Prophage protein (DUF1660) DUF2367 PF10164.4 gi|55376681|ref|YP_134532.1| - 0.26 11.1 1.0 0.46 10.3 0.1 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2367) zf-RING_3 PF14369.1 gi|55376681|ref|YP_134532.1| - 0.56 10.2 7.3 1.1 9.2 0.1 3.2 3 0 0 3 3 3 0 zinc-finger DZR PF12773.2 gi|55376681|ref|YP_134532.1| - 0.74 9.6 4.4 12 5.8 1.4 2.7 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55376681|ref|YP_134532.1| - 1.1 8.6 5.2 33 3.8 2.7 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|55376681|ref|YP_134532.1| - 3.4 7.4 7.7 39 4.0 0.1 3.5 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|55376681|ref|YP_134532.1| - 4.4 6.5 8.7 0.23 10.6 1.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|55376681|ref|YP_134532.1| - 6.6 6.7 9.2 8.6 6.3 2.7 2.7 2 1 0 2 2 2 0 Zinc ribbon domain DUF2387 PF09526.5 gi|55376681|ref|YP_134532.1| - 6.7 6.7 11.3 11 6.0 0.7 3.8 2 2 1 3 3 3 0 Probable metal-binding protein (DUF2387) RRN7 PF11781.3 gi|55376681|ref|YP_134532.1| - 8.7 5.9 11.2 2.4 7.7 0.0 3.0 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 HhH-GPD PF00730.20 gi|55376682|ref|YP_134533.1| - 1.2e-16 60.9 0.0 2.1e-16 60.1 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|55376682|ref|YP_134533.1| - 6.3e-05 23.0 0.6 0.35 11.0 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|55376682|ref|YP_134533.1| - 9.3e-05 21.9 0.0 0.00059 19.4 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|55376682|ref|YP_134533.1| - 0.02 14.7 0.1 3.9 7.4 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|55376682|ref|YP_134533.1| - 0.12 12.5 0.1 0.81 9.9 0.1 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain SNF PF00209.13 gi|55376683|ref|YP_134534.1| - 2.7e-47 161.4 31.7 5.8e-27 94.3 11.0 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family ABC_tran PF00005.22 gi|55376684|ref|YP_134535.1| - 8.1e-35 120.0 0.0 1.3e-34 119.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376684|ref|YP_134535.1| - 1.8e-08 34.7 0.0 0.0028 17.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|55376684|ref|YP_134535.1| - 1.1e-05 25.4 0.0 1.6e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|55376684|ref|YP_134535.1| - 0.0022 17.4 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|55376684|ref|YP_134535.1| - 0.0028 16.5 0.0 0.0046 15.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DUF258 PF03193.11 gi|55376684|ref|YP_134535.1| - 0.0051 16.0 0.0 0.0085 15.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|55376684|ref|YP_134535.1| - 0.0054 17.2 0.1 0.012 16.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein NTPase_1 PF03266.10 gi|55376684|ref|YP_134535.1| - 0.0077 15.9 0.3 0.022 14.5 0.0 2.0 2 1 1 3 3 3 1 NTPase AAA_22 PF13401.1 gi|55376684|ref|YP_134535.1| - 0.015 15.4 0.3 0.04 14.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|55376684|ref|YP_134535.1| - 0.017 14.7 0.4 0.033 13.8 0.3 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|55376684|ref|YP_134535.1| - 0.02 14.0 0.2 2.2 7.3 0.1 2.1 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|55376684|ref|YP_134535.1| - 0.027 14.1 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|55376684|ref|YP_134535.1| - 0.029 14.0 0.1 0.047 13.3 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|55376684|ref|YP_134535.1| - 0.032 13.8 0.3 0.053 13.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|55376684|ref|YP_134535.1| - 0.042 14.1 0.0 0.047 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|55376684|ref|YP_134535.1| - 0.066 12.1 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|55376684|ref|YP_134535.1| - 0.093 12.3 0.1 0.29 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|55376684|ref|YP_134535.1| - 0.097 12.8 0.3 0.15 12.2 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|55376684|ref|YP_134535.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain SMC_N PF02463.14 gi|55376684|ref|YP_134535.1| - 0.17 11.0 0.5 0.89 8.7 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|55376684|ref|YP_134535.1| - 0.17 11.7 0.7 1.3 9.0 0.5 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|55376685|ref|YP_134536.1| - 2.1e-31 109.0 0.0 3e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376685|ref|YP_134536.1| - 1.1e-09 38.6 0.4 9.2e-07 29.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|55376685|ref|YP_134536.1| - 1.3e-07 31.1 0.2 0.0011 18.1 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|55376685|ref|YP_134536.1| - 1.4e-05 25.4 0.1 2.7e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55376685|ref|YP_134536.1| - 0.00018 20.7 0.0 0.00028 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|55376685|ref|YP_134536.1| - 0.00034 20.0 0.1 0.00065 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|55376685|ref|YP_134536.1| - 0.0048 17.0 0.2 0.022 14.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|55376685|ref|YP_134536.1| - 0.0048 16.5 0.2 0.012 15.2 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.1 gi|55376685|ref|YP_134536.1| - 0.0076 16.2 2.6 0.05 13.5 1.8 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|55376685|ref|YP_134536.1| - 0.0089 15.6 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|55376685|ref|YP_134536.1| - 0.014 14.8 0.1 0.031 13.7 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|55376685|ref|YP_134536.1| - 0.019 14.8 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|55376685|ref|YP_134536.1| - 0.022 14.1 0.0 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|55376685|ref|YP_134536.1| - 0.028 14.3 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55376685|ref|YP_134536.1| - 0.041 14.7 1.0 0.19 12.5 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|55376685|ref|YP_134536.1| - 0.041 13.8 1.4 2.4 8.0 0.0 2.6 2 1 1 3 3 3 0 AAA domain GTP_EFTU PF00009.22 gi|55376685|ref|YP_134536.1| - 0.043 13.2 0.0 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_15 PF13175.1 gi|55376685|ref|YP_134536.1| - 0.051 12.6 0.0 0.5 9.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|55376685|ref|YP_134536.1| - 0.11 11.9 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.1 gi|55376685|ref|YP_134536.1| - 0.17 10.2 0.0 0.67 8.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|55376686|ref|YP_134537.1| - 2e-34 118.7 40.1 5.4e-34 117.3 27.8 1.6 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55376687|ref|YP_134538.1| - 3.9e-33 114.5 40.2 6.7e-33 113.7 27.9 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|55376688|ref|YP_134539.1| - 9.4e-76 255.3 1.2 1.1e-75 255.1 0.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|55376688|ref|YP_134539.1| - 1.6e-69 234.3 0.1 2e-69 234.0 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|55376688|ref|YP_134539.1| - 0.013 15.4 3.8 0.03 14.2 2.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Urease_beta PF00699.15 gi|55376689|ref|YP_134540.1| - 5e-45 151.4 0.3 6.2e-45 151.1 0.2 1.1 1 0 0 1 1 1 1 Urease beta subunit Amidohydro_1 PF01979.15 gi|55376690|ref|YP_134541.1| - 1.8e-53 182.3 2.5 2.7e-53 181.7 1.7 1.3 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|55376690|ref|YP_134541.1| - 3.6e-49 165.9 1.5 7.9e-49 164.8 1.0 1.6 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_4 PF13147.1 gi|55376690|ref|YP_134541.1| - 1.7e-06 28.2 0.4 0.0023 18.0 0.4 2.6 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|55376690|ref|YP_134541.1| - 3.5e-06 26.7 3.0 1.1e-05 25.1 2.1 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55376690|ref|YP_134541.1| - 3.6e-05 23.1 2.4 0.00027 20.2 0.4 2.9 3 1 0 3 3 3 1 Amidohydrolase family Urease_gamma PF00547.13 gi|55376691|ref|YP_134542.1| - 4.9e-43 145.1 0.0 5.8e-43 144.9 0.0 1.1 1 0 0 1 1 1 1 Urease, gamma subunit KCl_Cotrans_1 PF03522.10 gi|55376691|ref|YP_134542.1| - 0.24 10.9 1.6 0.51 9.8 1.1 1.6 1 0 0 1 1 1 0 K-Cl Co-transporter type 1 (KCC1) cobW PF02492.14 gi|55376692|ref|YP_134543.1| - 1.9e-34 118.6 0.0 2.2e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|55376692|ref|YP_134543.1| - 4.4e-08 32.2 1.6 3e-07 29.5 1.1 1.9 1 1 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|55376692|ref|YP_134543.1| - 7.7e-06 25.6 0.0 1.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|55376692|ref|YP_134543.1| - 0.0017 18.6 0.0 0.0025 18.0 0.0 1.4 2 0 0 2 2 2 1 ABC transporter AAA_18 PF13238.1 gi|55376692|ref|YP_134543.1| - 0.0033 17.7 0.1 0.0049 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|55376692|ref|YP_134543.1| - 0.013 15.4 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|55376692|ref|YP_134543.1| - 0.015 14.8 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|55376692|ref|YP_134543.1| - 0.018 15.8 0.1 0.034 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|55376692|ref|YP_134543.1| - 0.018 13.9 0.1 0.032 13.1 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase KAP_NTPase PF07693.9 gi|55376692|ref|YP_134543.1| - 0.033 13.1 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|55376692|ref|YP_134543.1| - 0.035 13.8 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 NTPase LysR_substrate PF03466.15 gi|55376692|ref|YP_134543.1| - 0.04 13.0 0.4 6.2 5.8 0.1 2.3 2 0 0 2 2 2 0 LysR substrate binding domain GTP_EFTU PF00009.22 gi|55376692|ref|YP_134543.1| - 0.06 12.7 0.0 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_19 PF13245.1 gi|55376692|ref|YP_134543.1| - 0.073 12.8 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|55376692|ref|YP_134543.1| - 0.093 12.3 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|55376692|ref|YP_134543.1| - 0.11 11.8 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|55376692|ref|YP_134543.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|55376692|ref|YP_134543.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|55376692|ref|YP_134543.1| - 0.23 11.7 0.4 0.35 11.1 0.3 1.2 1 0 0 1 1 1 0 AAA domain UreD PF01774.12 gi|55376693|ref|YP_134544.1| - 1.3e-51 175.0 0.3 1.7e-51 174.7 0.2 1.1 1 0 0 1 1 1 1 UreD urease accessory protein UreE_N PF02814.10 gi|55376694|ref|YP_134545.1| - 3.3e-14 52.1 1.0 3.3e-14 52.1 0.7 1.7 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.7 gi|55376694|ref|YP_134545.1| - 0.00019 21.4 7.8 0.00055 19.9 5.4 1.8 1 1 0 1 1 1 1 UreE urease accessory protein, C-terminal domain SAF PF08666.7 gi|55376694|ref|YP_134545.1| - 0.093 13.1 0.1 0.29 11.5 0.1 1.8 2 0 0 2 2 2 0 SAF domain UreF PF01730.11 gi|55376695|ref|YP_134546.1| - 3.6e-34 117.9 3.3 4.8e-34 117.5 2.3 1.1 1 0 0 1 1 1 1 UreF Methyltransf_11 PF08241.7 gi|55376696|ref|YP_134547.1| - 7.1e-19 68.1 0.0 1.2e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55376696|ref|YP_134547.1| - 7.6e-11 42.2 0.0 2.1e-10 40.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55376696|ref|YP_134547.1| - 6.5e-10 38.7 0.0 2.3e-09 37.0 0.0 1.6 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55376696|ref|YP_134547.1| - 1.9e-09 37.4 0.0 3.8e-09 36.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55376696|ref|YP_134547.1| - 1.3e-07 30.9 0.0 1.7e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|55376696|ref|YP_134547.1| - 1.8e-07 31.7 0.0 2.9e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55376696|ref|YP_134547.1| - 9.3e-07 28.8 0.2 1.8e-06 27.9 0.1 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55376696|ref|YP_134547.1| - 4e-06 27.2 0.0 7.2e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|55376696|ref|YP_134547.1| - 7.1e-06 25.0 0.0 8.3e-06 24.8 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase FtsJ PF01728.14 gi|55376696|ref|YP_134547.1| - 4.9e-05 23.3 0.0 0.00012 22.1 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|55376696|ref|YP_134547.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|55376696|ref|YP_134547.1| - 0.0043 16.1 0.0 0.0052 15.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|55376696|ref|YP_134547.1| - 0.011 16.5 0.3 0.019 15.7 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.11 gi|55376696|ref|YP_134547.1| - 0.065 11.5 0.0 0.14 10.5 0.0 1.5 1 1 1 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|55376696|ref|YP_134547.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain DUF302 PF03625.9 gi|55376697|ref|YP_134548.1| - 1.4e-17 63.0 0.0 2e-17 62.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 MgtE PF01769.11 gi|55376698|ref|YP_134549.1| - 0.068 13.4 0.0 5.6 7.2 0.0 2.3 1 1 1 2 2 2 0 Divalent cation transporter TrmB PF01978.14 gi|55376699|ref|YP_134550.1| - 6.3e-17 61.0 0.0 8.9e-17 60.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|55376699|ref|YP_134550.1| - 1.3e-07 31.1 0.0 2.5e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|55376699|ref|YP_134550.1| - 1.4e-06 27.8 0.0 3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|55376699|ref|YP_134550.1| - 1.1e-05 24.9 0.0 1.9e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain Penicillinase_R PF03965.11 gi|55376699|ref|YP_134550.1| - 6.9e-05 22.9 0.0 0.0001 22.3 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.2 gi|55376699|ref|YP_134550.1| - 8.3e-05 22.1 0.0 0.00023 20.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|55376699|ref|YP_134550.1| - 0.00017 21.2 0.1 0.00038 20.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|55376699|ref|YP_134550.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_24 PF13412.1 gi|55376699|ref|YP_134550.1| - 0.0028 16.9 0.0 0.0049 16.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|55376699|ref|YP_134550.1| - 0.011 15.9 0.0 0.021 15.1 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|55376699|ref|YP_134550.1| - 0.012 15.4 0.0 0.027 14.2 0.0 1.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain UMPH-1 PF05822.7 gi|55376699|ref|YP_134550.1| - 0.021 14.1 0.2 0.034 13.4 0.1 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_23 PF13384.1 gi|55376699|ref|YP_134550.1| - 0.022 14.4 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|55376699|ref|YP_134550.1| - 0.022 14.1 0.2 0.047 13.1 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma54_DBD PF04552.8 gi|55376699|ref|YP_134550.1| - 0.03 13.8 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_38 PF13936.1 gi|55376699|ref|YP_134550.1| - 0.035 13.6 0.0 0.092 12.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF387 PF04079.11 gi|55376699|ref|YP_134550.1| - 0.046 13.0 0.3 1.6 8.1 0.0 2.4 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HTH_29 PF13551.1 gi|55376699|ref|YP_134550.1| - 0.055 13.6 0.0 0.07 13.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Dimerisation PF08100.6 gi|55376699|ref|YP_134550.1| - 0.14 12.0 0.0 0.38 10.6 0.0 1.7 2 0 0 2 2 2 0 Dimerisation domain Thioredoxin PF00085.15 gi|55376700|ref|YP_134551.1| - 2.5e-27 94.5 0.0 3e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|55376700|ref|YP_134551.1| - 5.4e-10 39.4 0.1 4.6e-09 36.4 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|55376700|ref|YP_134551.1| - 2.5e-06 27.2 0.7 4e-06 26.5 0.2 1.5 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.1 gi|55376700|ref|YP_134551.1| - 1.2e-05 25.2 0.0 0.026 14.6 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_7 PF13899.1 gi|55376700|ref|YP_134551.1| - 2.8e-05 24.0 0.0 4.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|55376700|ref|YP_134551.1| - 4.7e-05 23.1 0.0 7.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|55376700|ref|YP_134551.1| - 0.00012 21.6 0.0 0.00015 21.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|55376700|ref|YP_134551.1| - 0.00033 20.1 0.0 0.00036 20.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.6 gi|55376700|ref|YP_134551.1| - 0.0018 18.1 0.1 0.0032 17.3 0.0 1.4 2 0 0 2 2 2 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|55376700|ref|YP_134551.1| - 0.002 18.3 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_4 PF13462.1 gi|55376700|ref|YP_134551.1| - 0.015 15.3 0.0 0.02 14.8 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_5 PF13743.1 gi|55376700|ref|YP_134551.1| - 0.021 14.3 0.0 0.038 13.5 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin Glutaredoxin PF00462.19 gi|55376700|ref|YP_134551.1| - 0.026 14.5 0.0 0.04 13.9 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin AhpC-TSA PF00578.16 gi|55376700|ref|YP_134551.1| - 0.038 13.6 0.1 2.8 7.6 0.1 2.1 1 1 1 2 2 2 0 AhpC/TSA family Redoxin PF08534.5 gi|55376700|ref|YP_134551.1| - 0.06 12.8 0.2 3.4 7.2 0.1 1.9 1 1 1 2 2 2 0 Redoxin Phosducin PF02114.11 gi|55376700|ref|YP_134551.1| - 0.085 11.5 0.0 0.097 11.3 0.0 1.0 1 0 0 1 1 1 0 Phosducin TrbC_Ftype PF09673.5 gi|55376700|ref|YP_134551.1| - 0.099 12.2 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein DUF953 PF06110.6 gi|55376700|ref|YP_134551.1| - 0.16 11.4 0.2 1.4 8.3 0.1 2.0 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Pyr_redox_2 PF07992.9 gi|55376701|ref|YP_134552.1| - 2.2e-29 102.7 3.6 1.5e-15 57.6 0.0 3.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|55376701|ref|YP_134552.1| - 1e-23 83.4 1.4 1.4e-18 67.0 0.2 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|55376701|ref|YP_134552.1| - 6.2e-13 48.7 0.0 6.2e-12 45.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|55376701|ref|YP_134552.1| - 5.9e-08 32.0 6.4 0.43 9.4 0.0 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|55376701|ref|YP_134552.1| - 4.1e-06 25.5 0.2 0.072 11.5 0.0 3.5 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|55376701|ref|YP_134552.1| - 1.2e-05 25.2 0.8 0.025 14.5 0.0 2.9 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|55376701|ref|YP_134552.1| - 0.00014 22.0 0.2 0.064 13.3 0.0 3.0 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|55376701|ref|YP_134552.1| - 0.0015 18.5 1.5 15 5.6 0.1 4.2 4 0 0 4 4 4 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|55376701|ref|YP_134552.1| - 0.0034 16.7 0.1 0.16 11.3 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|55376701|ref|YP_134552.1| - 0.013 15.2 1.2 0.014 15.0 0.1 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|55376701|ref|YP_134552.1| - 0.029 13.2 9.4 0.19 10.5 3.1 3.6 2 1 0 2 2 2 0 FAD binding domain GIDA PF01134.17 gi|55376701|ref|YP_134552.1| - 0.039 12.8 0.2 2.3 6.9 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|55376701|ref|YP_134552.1| - 0.085 11.7 0.1 9 5.0 0.0 2.9 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|55376701|ref|YP_134552.1| - 0.19 11.5 5.2 43 3.8 0.0 4.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding E1-E2_ATPase PF00122.15 gi|55376702|ref|YP_134553.1| - 9.4e-74 247.3 2.9 2.5e-73 245.9 1.2 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|55376702|ref|YP_134553.1| - 1.8e-35 122.1 1.8 1.8e-35 122.1 1.2 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|55376702|ref|YP_134553.1| - 1.8e-35 123.3 6.2 3.9e-35 122.2 4.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|55376702|ref|YP_134553.1| - 6.3e-20 70.9 0.0 1.8e-19 69.5 0.0 1.8 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|55376702|ref|YP_134553.1| - 1.4e-17 64.4 0.3 2.6e-17 63.6 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|55376702|ref|YP_134553.1| - 7.3e-15 54.1 0.0 1.5e-14 53.1 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|55376702|ref|YP_134553.1| - 9.6e-06 25.3 0.5 9.7e-05 22.0 0.4 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_24 PF13412.1 gi|55376702|ref|YP_134553.1| - 0.16 11.4 0.0 12 5.3 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Pyridox_ox_2 PF12900.2 gi|55376703|ref|YP_134554.1| - 2.1e-17 63.2 0.0 2.4e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|55376703|ref|YP_134554.1| - 6.5e-06 26.0 0.0 8.1e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Usp PF00582.21 gi|55376704|ref|YP_134555.1| - 1.8e-66 222.6 3.0 4.1e-33 114.5 0.1 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF2267 PF10025.4 gi|55376705|ref|YP_134556.1| - 2.1e-35 121.4 0.3 2.5e-35 121.2 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Pyridox_ox_2 PF12900.2 gi|55376706|ref|YP_134557.1| - 1.4e-16 60.6 0.0 1.6e-16 60.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|55376706|ref|YP_134557.1| - 0.00071 19.5 0.0 0.00094 19.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Usp PF00582.21 gi|55376707|ref|YP_134558.1| - 2.1e-31 109.0 2.5 2.3e-31 108.8 1.7 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|55376707|ref|YP_134558.1| - 0.0054 16.8 0.1 0.0097 16.0 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain DNA_photolyase PF00875.13 gi|55376707|ref|YP_134558.1| - 0.019 14.6 0.0 0.025 14.3 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase Histidinol_dh PF00815.15 gi|55376707|ref|YP_134558.1| - 0.08 11.5 0.9 0.097 11.2 0.6 1.2 1 0 0 1 1 1 0 Histidinol dehydrogenase Glucan_synthase PF02364.10 gi|55376708|ref|YP_134559.1| - 0.049 11.5 0.2 0.061 11.2 0.1 1.0 1 0 0 1 1 1 0 1,3-beta-glucan synthase component 7TMR-DISM_7TM PF07695.6 gi|55376708|ref|YP_134559.1| - 0.051 13.2 7.3 0.059 13.0 5.1 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling COX15-CtaA PF02628.10 gi|55376708|ref|YP_134559.1| - 0.13 11.1 6.9 0.16 10.8 4.8 1.1 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein DUF1772 PF08592.6 gi|55376708|ref|YP_134559.1| - 1.4 8.6 5.2 1.1 9.0 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) MARVEL PF01284.18 gi|55376708|ref|YP_134559.1| - 1.9 8.3 7.2 12 5.7 5.2 1.8 1 1 0 1 1 1 0 Membrane-associating domain NosL PF05573.7 gi|55376709|ref|YP_134560.1| - 2.1e-44 150.8 0.0 2.6e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 NosL RRM_1 PF00076.17 gi|55376709|ref|YP_134560.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) zf-FCS PF06467.9 gi|55376709|ref|YP_134560.1| - 0.75 9.4 3.7 3.1 7.5 2.6 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif HTH_20 PF12840.2 gi|55376710|ref|YP_134561.1| - 2.9e-16 59.0 2.1 4e-09 36.1 0.6 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.1 gi|55376710|ref|YP_134561.1| - 1.3e-11 43.7 0.1 8.2e-07 28.3 0.1 3.1 4 0 0 4 4 3 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55376710|ref|YP_134561.1| - 3.7e-10 39.3 0.2 2.4e-05 23.9 0.1 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55376710|ref|YP_134561.1| - 7.2e-08 32.0 0.0 0.00021 20.9 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55376710|ref|YP_134561.1| - 3.7e-07 29.7 4.8 7e-05 22.4 0.7 3.1 3 2 0 3 3 3 2 MarR family HTH_11 PF08279.7 gi|55376710|ref|YP_134561.1| - 6.5e-07 28.9 0.1 1.1e-05 24.9 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.7 gi|55376710|ref|YP_134561.1| - 4.3e-06 26.2 0.0 0.11 12.0 0.0 2.8 2 1 0 2 2 2 2 HTH DNA binding domain HTH_34 PF13601.1 gi|55376710|ref|YP_134561.1| - 5.7e-06 26.2 0.0 0.13 12.3 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|55376710|ref|YP_134561.1| - 0.00011 22.2 0.1 0.0078 16.3 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|55376710|ref|YP_134561.1| - 0.00024 20.6 0.5 0.0074 15.8 0.4 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|55376710|ref|YP_134561.1| - 0.00039 20.0 0.0 0.0032 17.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|55376710|ref|YP_134561.1| - 0.00064 19.2 0.4 0.0048 16.4 0.2 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|55376710|ref|YP_134561.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|55376710|ref|YP_134561.1| - 0.0022 17.5 0.7 0.0074 15.9 0.2 2.1 2 1 0 2 2 2 1 Homeodomain-like domain HTH_17 PF12728.2 gi|55376710|ref|YP_134561.1| - 0.0023 18.1 0.2 0.15 12.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|55376710|ref|YP_134561.1| - 0.0031 17.0 0.0 0.0068 15.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|55376710|ref|YP_134561.1| - 0.005 16.7 0.0 0.26 11.2 0.0 2.5 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|55376710|ref|YP_134561.1| - 0.0057 16.7 0.1 1.4 9.0 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein HTH_27 PF13463.1 gi|55376710|ref|YP_134561.1| - 0.0058 16.9 0.4 0.21 11.9 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain Phage_CI_repr PF07022.8 gi|55376710|ref|YP_134561.1| - 0.0059 16.6 0.2 0.02 14.9 0.0 1.8 2 0 0 2 2 2 1 Bacteriophage CI repressor helix-turn-helix domain HTH_CodY PF08222.6 gi|55376710|ref|YP_134561.1| - 0.008 15.4 0.0 0.051 12.9 0.0 2.0 2 0 0 2 2 2 1 CodY helix-turn-helix domain TetR_N PF00440.18 gi|55376710|ref|YP_134561.1| - 0.0097 15.5 0.1 0.03 13.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_3 PF01381.17 gi|55376710|ref|YP_134561.1| - 0.013 15.3 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_DeoR PF08220.7 gi|55376710|ref|YP_134561.1| - 0.028 13.9 0.0 0.098 12.2 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|55376710|ref|YP_134561.1| - 0.029 14.3 0.0 1.3 9.0 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|55376710|ref|YP_134561.1| - 0.035 14.3 0.1 0.24 11.6 0.0 2.2 2 1 1 3 3 3 0 Helix-turn-helix domain GerE PF00196.14 gi|55376710|ref|YP_134561.1| - 0.048 12.9 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|55376710|ref|YP_134561.1| - 0.049 12.9 0.0 0.16 11.2 0.0 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 DUF2513 PF10711.4 gi|55376710|ref|YP_134561.1| - 0.049 13.7 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_Mga PF08280.6 gi|55376710|ref|YP_134561.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_31 PF13560.1 gi|55376710|ref|YP_134561.1| - 0.28 11.4 8.0 1.3 9.2 5.5 2.4 1 1 0 1 1 1 0 Helix-turn-helix domain ABC2_membrane_2 PF12679.2 gi|55376711|ref|YP_134562.1| - 2e-05 23.5 18.6 0.00014 20.8 12.9 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein HrcA_DNA-bdg PF03444.10 gi|55376711|ref|YP_134562.1| - 0.17 11.3 0.2 0.37 10.2 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ABC2_membrane_3 PF12698.2 gi|55376711|ref|YP_134562.1| - 0.52 9.2 19.3 0.16 11.0 11.3 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|55376712|ref|YP_134563.1| - 1.9e-27 96.2 0.0 2.5e-27 95.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376712|ref|YP_134563.1| - 2.9e-19 70.1 0.0 1.8e-10 41.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55376712|ref|YP_134563.1| - 2.9e-05 23.3 0.0 0.14 11.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|55376712|ref|YP_134563.1| - 0.00089 17.8 0.0 0.089 11.2 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|55376712|ref|YP_134563.1| - 0.00098 19.5 0.1 0.0014 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|55376712|ref|YP_134563.1| - 0.0026 17.2 0.1 0.0049 16.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|55376712|ref|YP_134563.1| - 0.0086 15.9 0.0 0.015 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|55376712|ref|YP_134563.1| - 0.018 14.7 0.1 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|55376712|ref|YP_134563.1| - 0.027 13.5 0.0 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.14 gi|55376712|ref|YP_134563.1| - 0.027 13.8 0.7 0.055 12.9 0.3 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|55376712|ref|YP_134563.1| - 0.031 14.2 0.0 0.12 12.2 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|55376712|ref|YP_134563.1| - 0.064 12.4 0.0 0.099 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|55376712|ref|YP_134563.1| - 0.068 13.9 0.3 0.21 12.3 0.2 1.9 2 1 0 2 2 2 0 AAA domain NosD PF05048.8 gi|55376713|ref|YP_134564.1| - 8e-27 93.9 3.1 2.8e-26 92.1 1.0 2.0 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) NosL PF05573.7 gi|55376713|ref|YP_134564.1| - 2.4e-13 50.0 0.0 4.3e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 NosL Beta_helix PF13229.1 gi|55376713|ref|YP_134564.1| - 3e-13 49.8 18.6 4.5e-11 42.7 7.8 3.2 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|55376713|ref|YP_134564.1| - 0.0013 17.9 15.3 0.25 10.4 10.6 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) PsaM PF07465.8 gi|55376713|ref|YP_134564.1| - 2.9 7.5 5.6 5.1 6.7 3.9 1.4 1 0 0 1 1 1 0 Photosystem I protein M (PsaM) Molybdopterin PF00384.17 gi|55376714|ref|YP_134565.1| - 3.4e-80 269.9 0.0 4.1e-80 269.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|55376714|ref|YP_134565.1| - 8.9e-33 112.3 0.0 1.7e-32 111.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|55376714|ref|YP_134565.1| - 1.1e-06 28.3 2.2 3.5e-06 26.7 1.5 1.9 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain DUF969 PF06149.7 gi|55376715|ref|YP_134566.1| - 0.012 14.8 0.7 0.013 14.7 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF969) IMPDH PF00478.20 gi|55376716|ref|YP_134567.1| - 2.7e-110 368.5 4.9 4e-110 368.0 3.4 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|55376716|ref|YP_134567.1| - 1.6e-08 34.1 14.8 5e-07 29.1 10.3 2.1 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|55376716|ref|YP_134567.1| - 4.7e-06 25.7 8.1 9.6e-06 24.6 5.5 1.5 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|55376716|ref|YP_134567.1| - 1.9e-05 24.0 1.2 0.00027 20.3 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|55376716|ref|YP_134567.1| - 0.00099 18.1 6.7 0.0099 14.8 4.5 2.5 2 1 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|55376716|ref|YP_134567.1| - 0.0068 15.4 0.6 0.0068 15.4 0.4 1.8 2 1 0 2 2 2 1 Dihydroorotate dehydrogenase Aldolase PF01081.14 gi|55376716|ref|YP_134567.1| - 0.011 14.9 5.2 0.018 14.1 0.5 2.8 1 1 1 3 3 3 0 KDPG and KHG aldolase TMP-TENI PF02581.12 gi|55376716|ref|YP_134567.1| - 0.014 14.5 5.5 0.027 13.5 3.7 1.6 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|55376716|ref|YP_134567.1| - 0.06 12.5 0.4 0.06 12.5 0.3 2.0 2 1 0 2 2 2 0 PcrB family ThiG PF05690.9 gi|55376716|ref|YP_134567.1| - 1.3 8.0 10.7 0.063 12.3 0.8 2.9 2 1 1 3 3 3 0 Thiazole biosynthesis protein ThiG Response_reg PF00072.19 gi|55376718|ref|YP_134569.1| - 6.9e-20 71.1 0.0 2e-19 69.6 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|55376718|ref|YP_134569.1| - 3.1e-19 68.7 0.1 1.3e-18 66.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|55376718|ref|YP_134569.1| - 1.5e-18 66.8 0.1 3.2e-18 65.7 0.1 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|55376718|ref|YP_134569.1| - 5.9e-16 59.2 1.8 1.5e-14 54.7 0.0 2.9 3 1 0 3 3 3 1 GAF domain HisKA PF00512.20 gi|55376718|ref|YP_134569.1| - 6.8e-16 58.0 4.5 1.4e-15 57.0 1.2 2.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|55376718|ref|YP_134569.1| - 3.2e-14 53.1 0.1 1.2e-13 51.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|55376718|ref|YP_134569.1| - 1.6e-10 40.7 0.0 4.1e-10 39.4 0.0 1.8 1 0 0 1 1 1 1 PAS fold GAF PF01590.21 gi|55376718|ref|YP_134569.1| - 3e-10 40.4 0.2 3.1e-09 37.1 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|55376718|ref|YP_134569.1| - 9.2e-08 32.2 0.2 3.3e-07 30.4 0.0 2.1 2 1 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|55376718|ref|YP_134569.1| - 0.00011 22.2 0.0 0.00043 20.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|55376718|ref|YP_134569.1| - 0.00011 21.8 0.0 0.00044 20.0 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|55376718|ref|YP_134569.1| - 0.00027 20.5 0.0 0.00066 19.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ING PF12998.2 gi|55376718|ref|YP_134569.1| - 0.15 12.3 3.1 2.1 8.6 0.1 2.9 3 0 0 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding PAS_4 PF08448.5 gi|55376719|ref|YP_134570.1| - 1.5e-50 169.7 19.1 4e-14 52.5 0.0 6.7 6 1 0 6 6 6 4 PAS fold PAS_9 PF13426.1 gi|55376719|ref|YP_134570.1| - 2.5e-48 162.7 6.6 3.8e-15 56.1 0.0 5.6 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|55376719|ref|YP_134570.1| - 1.7e-33 114.7 4.4 1.2e-13 50.8 0.0 6.0 5 1 0 5 5 5 5 PAS fold PAS_8 PF13188.1 gi|55376719|ref|YP_134570.1| - 2.8e-21 74.5 0.2 7.1e-07 28.8 0.0 5.4 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|55376719|ref|YP_134570.1| - 6e-19 67.9 0.4 1.5e-10 41.0 0.1 3.9 4 0 0 4 4 4 2 PAS fold GAF_3 PF13492.1 gi|55376719|ref|YP_134570.1| - 1.3e-18 67.3 2.8 4.1e-09 36.6 0.1 3.6 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.21 gi|55376719|ref|YP_134570.1| - 1.4e-18 66.6 0.1 3e-18 65.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|55376719|ref|YP_134570.1| - 1.6e-15 57.9 7.4 6.6e-08 33.1 0.6 3.9 3 0 0 3 3 3 2 GAF domain Response_reg PF00072.19 gi|55376719|ref|YP_134570.1| - 6.2e-13 48.7 0.1 2.3e-12 46.9 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|55376719|ref|YP_134570.1| - 1.1e-12 47.6 0.8 1.1e-12 47.6 0.6 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|55376719|ref|YP_134570.1| - 0.00039 20.6 0.0 0.017 15.3 0.0 3.3 3 0 0 3 3 3 1 PAS domain ELFV_dehydrog PF00208.16 gi|55376720|ref|YP_134571.1| - 9.3e-72 241.5 0.2 1.1e-71 241.2 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|55376720|ref|YP_134571.1| - 1e-52 177.1 0.0 1.6e-52 176.5 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|55376720|ref|YP_134571.1| - 0.0039 16.3 0.0 0.0072 15.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|55376720|ref|YP_134571.1| - 0.016 14.6 0.0 0.03 13.6 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|55376720|ref|YP_134571.1| - 0.049 13.1 1.2 0.25 10.8 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|55376720|ref|YP_134571.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain zf-C2HC5 PF06221.8 gi|55376721|ref|YP_134572.1| - 0.0015 18.2 0.5 0.0017 18.0 0.3 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.5 gi|55376721|ref|YP_134572.1| - 0.0059 16.5 2.3 0.011 15.6 1.6 1.5 1 1 0 1 1 1 1 Zinc ribbon domain DUF1272 PF06906.6 gi|55376721|ref|YP_134572.1| - 0.017 14.9 0.7 0.02 14.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) C1_1 PF00130.17 gi|55376721|ref|YP_134572.1| - 0.033 13.9 0.9 0.04 13.6 0.6 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) YhfH PF14149.1 gi|55376721|ref|YP_134572.1| - 0.036 13.8 4.2 2.4 8.0 0.1 2.2 1 1 1 2 2 2 0 YhfH-like protein DZR PF12773.2 gi|55376721|ref|YP_134572.1| - 0.052 13.3 1.4 0.061 13.1 0.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon XPA_N PF01286.13 gi|55376721|ref|YP_134572.1| - 0.052 13.2 1.9 3.8 7.2 0.2 2.1 2 0 0 2 2 2 0 XPA protein N-terminal zf-H2C2_2 PF13465.1 gi|55376721|ref|YP_134572.1| - 0.061 13.6 0.2 0.061 13.6 0.1 1.7 2 0 0 2 2 2 0 Zinc-finger double domain RNA_pol_N PF01194.12 gi|55376721|ref|YP_134572.1| - 0.13 12.2 1.8 0.22 11.5 1.3 1.5 1 1 0 1 1 1 0 RNA polymerases N / 8 kDa subunit HypA PF01155.14 gi|55376721|ref|YP_134572.1| - 0.14 11.8 1.1 0.15 11.7 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|55376721|ref|YP_134572.1| - 0.14 12.1 2.3 0.18 11.8 0.2 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 NOB1_Zn_bind PF08772.6 gi|55376721|ref|YP_134572.1| - 0.15 11.9 0.8 0.18 11.6 0.6 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Prim_Zn_Ribbon PF08273.7 gi|55376721|ref|YP_134572.1| - 0.15 12.1 1.7 1.8 8.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|55376721|ref|YP_134572.1| - 0.3 10.5 3.1 0.4 10.1 0.3 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|55376721|ref|YP_134572.1| - 0.59 9.8 3.2 1.7 8.3 0.1 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) GAF_2 PF13185.1 gi|55376722|ref|YP_134573.1| - 6e-27 94.9 2.3 1.1e-15 58.3 0.0 3.0 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|55376722|ref|YP_134573.1| - 1.6e-18 67.0 0.2 2.6e-10 40.4 0.1 2.8 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|55376722|ref|YP_134573.1| - 4.6e-17 61.3 0.0 1.7e-16 59.5 0.0 2.1 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|55376722|ref|YP_134573.1| - 1.4e-14 54.2 0.7 2.8e-08 34.0 0.0 3.1 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|55376722|ref|YP_134573.1| - 4.2e-12 46.0 4.7 1.4e-09 37.9 0.3 3.8 3 1 0 3 3 3 2 PAS fold Response_reg PF00072.19 gi|55376722|ref|YP_134573.1| - 1.9e-11 43.9 0.1 1.6e-10 41.0 0.0 2.7 3 0 0 3 3 3 1 Response regulator receiver domain GAF PF01590.21 gi|55376722|ref|YP_134573.1| - 1.3e-09 38.3 5.0 5.8e-05 23.2 0.0 3.5 4 0 0 4 4 4 2 GAF domain PAS PF00989.19 gi|55376722|ref|YP_134573.1| - 5e-06 26.2 6.1 0.00071 19.3 0.0 3.9 5 0 0 5 5 5 2 PAS fold PAS_7 PF12860.2 gi|55376722|ref|YP_134573.1| - 0.002 18.0 2.6 1 9.3 0.0 4.1 3 2 0 3 3 3 2 PAS fold HTH_22 PF13309.1 gi|55376722|ref|YP_134573.1| - 0.08 12.7 0.1 0.63 9.8 0.0 2.7 2 1 0 2 2 2 0 HTH domain RHH_1 PF01402.16 gi|55376723|ref|YP_134574.1| - 5.6e-10 38.6 0.9 1.4e-09 37.4 0.0 2.2 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|55376723|ref|YP_134574.1| - 0.0012 18.5 0.3 0.0043 16.7 0.0 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix domain TraY PF05509.6 gi|55376723|ref|YP_134574.1| - 0.015 15.0 0.2 0.081 12.7 0.0 2.1 2 0 0 2 2 2 0 TraY domain PUB PF09409.5 gi|55376723|ref|YP_134574.1| - 0.016 14.9 0.0 0.041 13.6 0.0 1.7 1 0 0 1 1 1 0 PUB domain RTTN_N PF14726.1 gi|55376723|ref|YP_134574.1| - 0.025 15.1 0.1 0.042 14.4 0.1 1.4 1 0 0 1 1 1 0 Rotatin, an armadillo repeat protein, centriole functioning RepB-RCR_reg PF10723.4 gi|55376723|ref|YP_134574.1| - 0.036 13.8 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 Replication regulatory protein RepB Imm16 PF15565.1 gi|55376723|ref|YP_134574.1| - 0.072 12.9 0.5 0.15 11.9 0.4 1.5 1 0 0 1 1 1 0 Immunity protein 16 Nramp PF01566.13 gi|55376724|ref|YP_134575.1| - 1e-100 337.0 24.7 1.2e-100 336.7 17.1 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Hydantoinase_A PF01968.13 gi|55376725|ref|YP_134576.1| - 2.4e-91 305.8 12.4 4.2e-90 301.7 4.1 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|55376725|ref|YP_134576.1| - 2.6e-51 173.6 2.3 2e-50 170.7 0.2 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|55376725|ref|YP_134576.1| - 0.00088 17.7 4.5 0.0064 14.8 0.2 2.5 3 0 0 3 3 3 2 MutL protein Hydantoinase_B PF02538.9 gi|55376726|ref|YP_134577.1| - 1.3e-152 508.6 0.0 1.6e-152 508.4 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF1702 PF08012.6 gi|55376726|ref|YP_134577.1| - 0.068 11.7 0.4 5.2 5.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1702) DUF3592 PF12158.3 gi|55376727|ref|YP_134578.1| - 8.2e-21 74.3 3.7 1.1e-20 73.9 1.4 2.0 2 1 0 2 2 2 1 Protein of unknown function (DUF3592) SUR7 PF06687.7 gi|55376727|ref|YP_134578.1| - 0.056 13.0 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 SUR7/PalI family DUF4064 PF13273.1 gi|55376727|ref|YP_134578.1| - 0.11 12.6 0.2 0.46 10.6 0.0 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) PAS_9 PF13426.1 gi|55376728|ref|YP_134579.1| - 8.6e-14 51.7 0.0 1.4e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|55376728|ref|YP_134579.1| - 0.00039 20.1 0.0 0.00058 19.6 0.0 1.3 1 0 0 1 1 1 1 PAS fold Na_H_antiporter PF03553.9 gi|55376730|ref|YP_134581.1| - 2.6e-51 174.4 47.7 3.4e-51 174.0 18.4 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.13 gi|55376732|ref|YP_134583.1| - 4.5e-35 120.1 0.1 3.1e-34 117.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55376732|ref|YP_134583.1| - 1.1e-07 31.3 0.4 2.5e-07 30.1 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55376732|ref|YP_134583.1| - 4.8e-05 22.6 0.0 0.00014 21.1 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|55376732|ref|YP_134583.1| - 0.00022 20.7 0.0 0.00042 19.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|55376732|ref|YP_134583.1| - 0.00028 20.6 0.0 0.0009 19.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|55376732|ref|YP_134583.1| - 0.0012 18.5 0.0 0.003 17.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55376732|ref|YP_134583.1| - 0.0012 19.0 0.5 0.011 16.0 0.0 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|55376732|ref|YP_134583.1| - 0.0021 17.8 0.0 0.0047 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|55376732|ref|YP_134583.1| - 0.0039 16.8 0.0 0.0099 15.5 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|55376732|ref|YP_134583.1| - 0.013 15.2 0.0 0.041 13.5 0.0 1.9 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB APC2 PF08672.6 gi|55376732|ref|YP_134583.1| - 0.039 14.2 0.0 0.085 13.1 0.0 1.6 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 HTH_Crp_2 PF13545.1 gi|55376732|ref|YP_134583.1| - 0.071 12.9 0.1 4.7 7.0 0.0 2.9 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain Tn7_Tnp_TnsA_C PF08721.6 gi|55376732|ref|YP_134583.1| - 0.078 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 TnsA endonuclease C terminal Laminin_G_3 PF13385.1 gi|55376732|ref|YP_134583.1| - 0.22 11.7 0.5 0.84 9.8 0.4 1.8 1 1 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily NAD_binding_8 PF13450.1 gi|55376733|ref|YP_134584.1| - 2.7e-05 24.0 0.6 5.7e-05 23.0 0.4 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|55376733|ref|YP_134584.1| - 0.0032 17.0 0.0 0.008 15.7 0.0 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|55376733|ref|YP_134584.1| - 0.0077 16.1 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|55376733|ref|YP_134584.1| - 0.0099 14.3 0.0 0.015 13.7 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|55376733|ref|YP_134584.1| - 0.015 14.1 0.1 0.03 13.1 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.19 gi|55376733|ref|YP_134584.1| - 0.018 13.9 0.6 0.04 12.8 0.2 1.6 1 1 1 2 2 2 0 FAD dependent oxidoreductase CbiG_C PF01890.11 gi|55376733|ref|YP_134584.1| - 0.076 13.2 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 Cobalamin synthesis G C-terminus Pyr_redox PF00070.22 gi|55376733|ref|YP_134584.1| - 0.092 13.1 0.2 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|55376733|ref|YP_134584.1| - 0.13 11.1 0.1 0.19 10.5 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A DDE_Tnp_IS240 PF13610.1 gi|55376734|ref|YP_134585.1| - 3.8e-20 72.2 0.2 5.4e-20 71.7 0.2 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|55376734|ref|YP_134585.1| - 6.1e-08 32.0 3.0 1.2e-07 31.1 2.0 1.5 1 0 0 1 1 1 1 Integrase core domain rve PF00665.21 gi|55376734|ref|YP_134585.1| - 0.00043 20.3 0.2 0.00082 19.4 0.1 1.6 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|55376734|ref|YP_134585.1| - 0.0011 18.7 2.8 0.16 11.8 0.1 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF2384) DDE_Tnp_IS66 PF03050.9 gi|55376734|ref|YP_134585.1| - 0.039 13.1 0.2 0.079 12.1 0.1 1.7 1 1 0 1 1 1 0 Transposase IS66 family DUF2999 PF11212.3 gi|55376735|ref|YP_134586.1| - 0.14 12.1 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2999) CbiA PF01656.18 gi|55376736|ref|YP_134587.1| - 5.1e-25 88.0 0.0 8.5e-25 87.3 0.0 1.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55376736|ref|YP_134587.1| - 8.8e-11 41.9 0.0 6.4e-09 35.9 0.0 2.6 3 0 0 3 3 3 1 AAA domain MipZ PF09140.6 gi|55376736|ref|YP_134587.1| - 4.7e-07 29.1 0.0 8.5e-05 21.7 0.0 2.5 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|55376736|ref|YP_134587.1| - 1.1e-06 27.9 0.1 8.6e-06 25.0 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|55376736|ref|YP_134587.1| - 0.00012 21.5 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|55376736|ref|YP_134587.1| - 0.00071 18.8 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|55376736|ref|YP_134587.1| - 0.021 14.2 0.1 0.058 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain NHase_alpha PF02979.11 gi|55376736|ref|YP_134587.1| - 0.022 14.0 0.0 0.043 13.0 0.0 1.5 1 0 0 1 1 1 0 Nitrile hydratase, alpha chain AAA_10 PF12846.2 gi|55376736|ref|YP_134587.1| - 0.04 13.3 0.1 0.22 10.8 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|55376736|ref|YP_134587.1| - 0.05 13.5 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.1 gi|55376736|ref|YP_134587.1| - 0.16 11.5 0.1 1 8.9 0.1 2.2 2 1 0 2 2 2 0 AAA domain Phage_integrase PF00589.17 gi|55376737|ref|YP_134588.1| - 9.3e-10 38.4 0.0 1.7e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|55376737|ref|YP_134588.1| - 0.006 16.8 0.2 0.071 13.4 0.0 2.6 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Peptidase_M13_N PF05649.8 gi|55376737|ref|YP_134588.1| - 0.02 13.9 0.0 0.034 13.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M13 DUF1932 PF09130.6 gi|55376737|ref|YP_134588.1| - 0.3 10.8 2.6 18 5.1 0.0 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF1932) DUF2937 PF11157.3 gi|55376737|ref|YP_134588.1| - 1.8 7.8 4.3 13 5.1 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) Bac_export_3 PF01313.14 gi|55376738|ref|YP_134589.1| - 0.13 11.9 0.2 0.15 11.7 0.1 1.0 1 0 0 1 1 1 0 Bacterial export proteins, family 3 SBF PF01758.11 gi|55376739|ref|YP_134590.1| - 2.5e-38 131.3 9.9 3.9e-38 130.7 6.9 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|55376739|ref|YP_134590.1| - 3.4e-14 52.6 11.6 3.8e-14 52.4 8.0 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|55376739|ref|YP_134590.1| - 0.019 13.2 10.5 0.033 12.4 1.7 2.3 2 1 0 2 2 2 0 Membrane transport protein DUF162 PF02589.10 gi|55376740|ref|YP_134591.1| - 1.8e-34 118.9 0.2 2e-34 118.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Secretin_N PF03958.12 gi|55376740|ref|YP_134591.1| - 0.0087 16.2 0.4 0.029 14.5 0.1 2.0 1 1 1 2 2 2 1 Bacterial type II/III secretion system short domain OKR_DC_1_N PF03709.10 gi|55376740|ref|YP_134591.1| - 0.01 15.8 0.1 0.027 14.5 0.1 1.7 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain BOFC_N PF08977.5 gi|55376740|ref|YP_134591.1| - 0.55 10.0 2.8 19 5.1 0.4 2.4 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal TetR_C_6 PF13977.1 gi|55376741|ref|YP_134592.1| - 7.6e-12 45.2 0.1 1.2e-11 44.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|55376741|ref|YP_134592.1| - 3.9e-10 39.1 0.1 8.7e-10 38.0 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|55376741|ref|YP_134592.1| - 0.026 14.0 0.0 0.062 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_7 PF14246.1 gi|55376741|ref|YP_134592.1| - 0.11 12.6 0.1 0.44 10.8 0.0 1.9 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal region MMPL PF03176.10 gi|55376742|ref|YP_134593.1| - 1.5e-28 99.4 25.5 6.8e-21 74.3 1.6 2.6 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|55376742|ref|YP_134593.1| - 3.1e-10 39.7 3.3 1.7e-07 30.8 0.1 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|55376742|ref|YP_134593.1| - 1.9e-09 36.0 13.6 4.6e-09 34.7 3.6 2.2 2 0 0 2 2 2 2 Patched family CARDB PF07705.6 gi|55376743|ref|YP_134594.1| - 4.7e-12 45.8 22.2 0.0089 16.0 0.3 5.6 5 1 0 5 5 5 4 CARDB NPCBM_assoc PF10633.4 gi|55376743|ref|YP_134594.1| - 1.8e-09 37.4 24.8 0.00042 20.2 0.3 8.2 6 4 2 8 8 8 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|55376743|ref|YP_134594.1| - 4.5e-06 26.6 0.6 4.2 7.4 0.0 5.0 6 0 0 6 6 6 2 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.13 gi|55376743|ref|YP_134594.1| - 4.3e-05 23.4 29.2 0.19 11.8 0.8 5.6 5 0 0 5 5 5 4 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|55376743|ref|YP_134594.1| - 0.00021 20.8 5.4 1.1 8.7 0.1 4.8 5 1 0 5 5 5 2 Protein of unknown function (DUF2393) AP3B1_C PF14796.1 gi|55376743|ref|YP_134594.1| - 0.18 11.4 4.5 0.26 10.9 0.0 3.2 4 0 0 4 4 4 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal DUF1573 PF07610.6 gi|55376743|ref|YP_134594.1| - 2.3 7.8 5.9 26 4.4 0.6 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1573) TRAP_beta PF05753.9 gi|55376743|ref|YP_134594.1| - 2.7 7.1 7.1 2.3 7.3 0.1 3.6 4 1 0 4 4 4 0 Translocon-associated protein beta (TRAPB) TetR_C_6 PF13977.1 gi|55376744|ref|YP_134595.1| - 4.2e-12 46.0 0.2 6.2e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|55376744|ref|YP_134595.1| - 1.6e-10 40.4 0.3 3e-10 39.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.11 gi|55376744|ref|YP_134595.1| - 0.033 13.5 0.0 0.08 12.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3139 PF11337.3 gi|55376744|ref|YP_134595.1| - 0.077 13.2 0.1 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) HTH_5 PF01022.15 gi|55376744|ref|YP_134595.1| - 0.086 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|55376744|ref|YP_134595.1| - 0.13 11.8 0.0 0.44 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Hemopexin PF00045.14 gi|55376745|ref|YP_134596.1| - 0.016 14.9 0.7 0.16 11.7 0.2 2.4 2 0 0 2 2 2 0 Hemopexin Cdc6_C PF09079.6 gi|55376747|ref|YP_134598.1| - 1.1e-23 82.7 0.0 4.2e-23 80.8 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|55376747|ref|YP_134598.1| - 4.9e-10 39.6 0.0 3.6e-09 36.8 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55376747|ref|YP_134598.1| - 6.1e-09 36.1 0.0 1.6e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|55376747|ref|YP_134598.1| - 0.002 17.0 0.0 0.0034 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|55376747|ref|YP_134598.1| - 0.0026 17.5 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|55376747|ref|YP_134598.1| - 0.0047 17.1 0.0 0.013 15.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|55376747|ref|YP_134598.1| - 0.0097 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain RNA_helicase PF00910.17 gi|55376747|ref|YP_134598.1| - 0.029 14.5 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|55376747|ref|YP_134598.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein DEAD PF00270.24 gi|55376747|ref|YP_134598.1| - 0.15 11.4 0.4 15 4.9 0.1 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase HTH_10 PF04967.7 gi|55376748|ref|YP_134599.1| - 7.1e-17 60.7 0.0 1.1e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.1 gi|55376748|ref|YP_134599.1| - 0.0019 17.7 0.0 0.0041 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|55376748|ref|YP_134599.1| - 0.0019 17.9 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.2 gi|55376748|ref|YP_134599.1| - 0.0025 17.4 0.0 0.0055 16.3 0.0 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|55376748|ref|YP_134599.1| - 0.0026 17.1 0.0 0.014 14.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|55376748|ref|YP_134599.1| - 0.0041 16.8 0.0 0.0099 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55376748|ref|YP_134599.1| - 0.0096 15.5 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|55376748|ref|YP_134599.1| - 0.011 15.3 0.0 0.025 14.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_30 PF13556.1 gi|55376748|ref|YP_134599.1| - 0.032 13.8 0.0 0.064 12.8 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain CENP-B_N PF04218.8 gi|55376748|ref|YP_134599.1| - 0.032 13.6 0.0 0.057 12.8 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain GerE PF00196.14 gi|55376748|ref|YP_134599.1| - 0.064 12.5 0.0 0.21 10.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.1 gi|55376748|ref|YP_134599.1| - 0.085 12.0 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Oxidored_q6 PF01058.17 gi|55376749|ref|YP_134600.1| - 6.9e-22 77.4 0.1 1e-21 76.9 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Peripla_BP_2 PF01497.13 gi|55376750|ref|YP_134601.1| - 6.1e-13 48.4 0.0 1.4e-12 47.2 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein GFO_IDH_MocA PF01408.17 gi|55376751|ref|YP_134602.1| - 4e-22 78.9 0.0 1e-21 77.6 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|55376751|ref|YP_134602.1| - 0.02 14.6 0.0 0.054 13.3 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain ADH_zinc_N PF00107.21 gi|55376751|ref|YP_134602.1| - 0.088 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Amidohydro_4 PF13147.1 gi|55376752|ref|YP_134603.1| - 2.7e-30 106.3 3.3 3.1e-30 106.1 2.3 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|55376752|ref|YP_134603.1| - 4.1e-10 39.3 0.1 1.1e-09 37.9 0.1 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55376752|ref|YP_134603.1| - 0.0034 16.6 3.5 0.025 13.8 0.8 2.6 2 1 1 3 3 3 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|55376752|ref|YP_134603.1| - 0.035 13.7 0.6 0.26 10.9 0.0 2.3 1 1 0 2 2 2 0 Amidohydrolase family DUF3040 PF11239.3 gi|55376753|ref|YP_134604.1| - 0.0046 16.9 0.1 0.0099 15.9 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) HTH_20 PF12840.2 gi|55376753|ref|YP_134604.1| - 0.024 14.4 0.1 0.059 13.1 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain DUF4191 PF13829.1 gi|55376753|ref|YP_134604.1| - 0.025 13.6 0.0 0.35 9.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) Mrr_N PF14338.1 gi|55376753|ref|YP_134604.1| - 0.032 14.3 0.0 0.077 13.0 0.0 1.7 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_11 PF08279.7 gi|55376753|ref|YP_134604.1| - 0.052 13.1 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF2892 PF11127.3 gi|55376753|ref|YP_134604.1| - 0.92 9.3 6.1 1.7 8.5 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) HTH_45 PF14947.1 gi|55376754|ref|YP_134605.1| - 1.4e-05 24.7 0.0 1.8e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|55376754|ref|YP_134605.1| - 7.9e-05 22.3 0.3 0.0001 22.0 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|55376754|ref|YP_134605.1| - 0.00013 22.2 0.2 0.00016 21.9 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|55376754|ref|YP_134605.1| - 0.001 18.7 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Replic_Relax PF13814.1 gi|55376754|ref|YP_134605.1| - 0.0063 16.3 0.0 0.0082 16.0 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation MarR_2 PF12802.2 gi|55376754|ref|YP_134605.1| - 0.01 15.5 0.5 0.014 15.0 0.3 1.2 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|55376754|ref|YP_134605.1| - 0.022 14.5 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4364 PF14277.1 gi|55376754|ref|YP_134605.1| - 0.033 13.8 0.0 0.042 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|55376754|ref|YP_134605.1| - 0.045 13.4 0.1 0.1 12.3 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|55376754|ref|YP_134605.1| - 0.092 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Ribosomal_L21e PF01157.13 gi|55376754|ref|YP_134605.1| - 0.11 12.2 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L21e HTH_34 PF13601.1 gi|55376754|ref|YP_134605.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain E2F_TDP PF02319.15 gi|55376754|ref|YP_134605.1| - 0.12 11.9 0.3 0.15 11.6 0.2 1.4 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain CARDB PF07705.6 gi|55376755|ref|YP_134606.1| - 2.9e-14 52.9 24.5 0.0048 16.9 0.2 4.6 5 0 0 5 5 5 4 CARDB Fn3-like PF14310.1 gi|55376755|ref|YP_134606.1| - 0.00023 21.0 9.2 0.74 9.7 0.0 5.6 5 3 1 6 6 6 2 Fibronectin type III-like domain DUF3872 PF12988.2 gi|55376755|ref|YP_134606.1| - 0.0008 18.9 0.2 0.25 10.8 0.0 3.1 3 0 0 3 3 3 1 Domain of unknown function, B. Theta Gene description (DUF3872) Transglut_C PF00927.17 gi|55376755|ref|YP_134606.1| - 0.0021 18.0 2.8 1.1 9.3 0.1 3.8 3 0 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain BsuPI PF12690.2 gi|55376755|ref|YP_134606.1| - 0.0056 16.3 2.8 3.7 7.3 0.0 4.7 5 0 0 5 5 5 1 Intracellular proteinase inhibitor FixG_C PF11614.3 gi|55376755|ref|YP_134606.1| - 0.022 14.8 11.4 3 7.9 0.8 4.7 3 2 2 5 5 5 0 IG-like fold at C-terminal of FixG, putative oxidoreductase TMEM171 PF15471.1 gi|55376755|ref|YP_134606.1| - 0.039 12.7 0.3 0.079 11.7 0.2 1.5 1 0 0 1 1 1 0 Transmembrane protein family 171 A2M PF00207.17 gi|55376755|ref|YP_134606.1| - 0.078 12.5 2.6 1.9 8.1 0.1 3.3 4 0 0 4 4 4 0 Alpha-2-macroglobulin family Glycos_transf_2 PF00535.21 gi|55376756|ref|YP_134607.1| - 0.0018 17.9 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 BTG PF07742.7 gi|55376756|ref|YP_134607.1| - 0.0081 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 BTG family DUF1616 PF07760.6 gi|55376757|ref|YP_134608.1| - 1.2e-76 257.5 1.4 1.4e-76 257.4 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Glycos_transf_1 PF00534.15 gi|55376758|ref|YP_134609.1| - 2.5e-34 118.1 0.0 4.3e-34 117.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55376758|ref|YP_134609.1| - 2.7e-22 79.3 0.0 7e-22 78.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|55376758|ref|YP_134609.1| - 5.6e-18 65.2 0.0 8.7e-18 64.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|55376758|ref|YP_134609.1| - 7.5e-18 65.1 0.3 4.5e-17 62.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|55376758|ref|YP_134609.1| - 1e-06 28.9 0.0 2.4e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|55376758|ref|YP_134609.1| - 0.04 13.7 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|55376759|ref|YP_134610.1| - 5.6e-32 110.5 0.0 8.3e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55376759|ref|YP_134610.1| - 2.5e-22 79.7 2.2 2.5e-22 79.7 0.6 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55376759|ref|YP_134610.1| - 4.7e-18 65.5 0.3 7.4e-18 64.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|55376759|ref|YP_134610.1| - 1.3e-16 61.0 0.0 4.7e-16 59.1 0.0 1.9 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55376759|ref|YP_134610.1| - 1.9e-09 37.6 0.3 4.3e-09 36.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|55376759|ref|YP_134610.1| - 1.6e-07 31.2 0.0 3.3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|55376759|ref|YP_134610.1| - 3e-05 23.6 0.1 0.011 15.3 0.0 2.3 1 1 1 2 2 2 2 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|55376760|ref|YP_134611.1| - 1.3e-37 128.8 0.0 2.3e-36 124.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55376760|ref|YP_134611.1| - 2e-21 76.5 0.1 1.5e-20 73.7 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|55376760|ref|YP_134611.1| - 1.8e-09 37.7 0.1 4.4e-09 36.5 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55376760|ref|YP_134611.1| - 5.1e-09 36.4 0.5 2.2e-08 34.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|55376760|ref|YP_134611.1| - 8.7e-07 28.8 0.0 1.6e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|55376760|ref|YP_134611.1| - 0.0034 17.2 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Sulfatase PF00884.18 gi|55376763|ref|YP_134614.1| - 5.3e-43 147.3 0.2 6.8e-43 147.0 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55376763|ref|YP_134614.1| - 1e-05 25.0 2.7 0.014 14.7 0.2 2.5 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|55376763|ref|YP_134614.1| - 0.076 12.3 0.5 0.36 10.1 0.3 2.0 2 0 0 2 2 2 0 Metalloenzyme superfamily Sulfatase PF00884.18 gi|55376764|ref|YP_134615.1| - 2.6e-40 138.5 0.1 3.3e-40 138.1 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|55376764|ref|YP_134615.1| - 3e-15 56.4 1.1 1.1e-08 34.8 0.2 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|55376764|ref|YP_134615.1| - 0.0056 15.1 0.0 0.0082 14.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|55376764|ref|YP_134615.1| - 0.1 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.21 gi|55376765|ref|YP_134616.1| - 1.4e-30 106.2 0.0 2.1e-30 105.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|55376765|ref|YP_134616.1| - 1.6e-20 73.9 0.1 2.3e-20 73.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|55376765|ref|YP_134616.1| - 4.1e-10 39.2 0.0 7e-10 38.4 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 TPR_2 PF07719.12 gi|55376765|ref|YP_134616.1| - 0.00038 20.1 1.2 0.0008 19.1 0.8 1.5 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_16 PF13432.1 gi|55376765|ref|YP_134616.1| - 0.0062 17.1 2.4 0.012 16.3 1.7 1.4 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_11 PF13414.1 gi|55376765|ref|YP_134616.1| - 0.038 13.6 0.6 0.065 12.8 0.4 1.4 1 0 0 1 1 1 0 TPR repeat Rhamno_transf PF11316.3 gi|55376765|ref|YP_134616.1| - 0.041 13.0 0.0 0.061 12.5 0.0 1.2 1 0 0 1 1 1 0 Putative rhamnosyl transferase TPR_8 PF13181.1 gi|55376765|ref|YP_134616.1| - 0.053 13.3 1.7 0.077 12.8 0.4 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Sulfatase PF00884.18 gi|55376766|ref|YP_134617.1| - 2e-17 63.3 0.8 2e-16 60.0 0.0 2.1 1 1 1 2 2 2 1 Sulfatase Phosphodiest PF01663.17 gi|55376766|ref|YP_134617.1| - 0.00065 19.1 0.4 0.93 8.7 0.0 2.2 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|55376766|ref|YP_134617.1| - 0.19 10.1 0.0 0.21 9.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) CBM_6 PF03422.10 gi|55376769|ref|YP_134620.1| - 9.6e-52 174.3 21.6 1.5e-19 70.4 2.2 4.1 3 1 0 3 3 3 3 Carbohydrate binding module (family 6) PRCC PF10253.4 gi|55376769|ref|YP_134620.1| - 3.3 8.3 6.9 8.1 7.0 2.2 2.3 2 0 0 2 2 2 0 Mitotic checkpoint regulator, MAD2B-interacting Polysacc_synt PF01943.12 gi|55376772|ref|YP_134623.1| - 4.8e-28 98.1 7.9 4.8e-28 98.1 5.5 2.8 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|55376772|ref|YP_134623.1| - 2.3e-16 60.0 13.9 2.3e-16 60.0 9.6 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|55376772|ref|YP_134623.1| - 1.2e-12 47.8 18.0 1.2e-12 47.8 12.5 3.8 4 2 2 6 6 6 1 Polysaccharide biosynthesis C-terminal domain FUSC-like PF12805.2 gi|55376772|ref|YP_134623.1| - 0.65 8.8 5.1 0.75 8.6 2.0 2.1 2 0 0 2 2 2 0 FUSC-like inner membrane protein yccS GFO_IDH_MocA PF01408.17 gi|55376773|ref|YP_134624.1| - 1.9e-21 76.7 0.0 3.4e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.1 gi|55376773|ref|YP_134624.1| - 0.021 14.9 0.0 0.053 13.6 0.0 1.7 1 1 0 1 1 1 0 CoA binding domain DUF1349 PF07081.6 gi|55376773|ref|YP_134624.1| - 0.086 12.1 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) SepZ PF06066.6 gi|55376774|ref|YP_134625.1| - 0.076 13.0 0.0 0.086 12.8 0.0 1.1 1 0 0 1 1 1 0 SepZ Glyco_tranf_2_3 PF13641.1 gi|55376775|ref|YP_134626.1| - 1e-11 45.1 0.5 4.1e-11 43.1 0.4 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|55376775|ref|YP_134626.1| - 7.9e-11 41.9 3.1 2.2e-08 33.9 0.0 2.6 2 1 1 3 3 3 2 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|55376775|ref|YP_134626.1| - 6.8e-08 31.9 0.2 0.0058 15.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|55376775|ref|YP_134626.1| - 1.7e-07 31.1 0.1 2.4e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|55376775|ref|YP_134626.1| - 2.4e-05 23.7 2.6 4.4e-05 22.8 1.8 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Tox-HNH-HHH PF15637.1 gi|55376775|ref|YP_134626.1| - 0.16 11.7 0.5 3.3 7.5 0.0 2.5 2 1 0 2 2 2 0 HNH/Endo VII superfamily nuclease toxin with a HHH motif NTP_transferase PF00483.18 gi|55376776|ref|YP_134627.1| - 7.4e-40 136.8 0.0 8.2e-40 136.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|55376776|ref|YP_134627.1| - 3.5e-15 56.4 0.0 4.4e-15 56.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|55376776|ref|YP_134627.1| - 1.2e-06 28.2 0.0 2.6e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|55376776|ref|YP_134627.1| - 0.071 12.7 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 IncA PF04156.9 gi|55376779|ref|YP_134630.1| - 1.2 8.7 6.6 0.34 10.4 2.4 1.6 2 0 0 2 2 2 0 IncA protein GAF_2 PF13185.1 gi|55376781|ref|YP_134632.1| - 6e-38 130.6 1.5 1.9e-14 54.4 0.0 4.4 4 0 0 4 4 4 4 GAF domain GAF_3 PF13492.1 gi|55376781|ref|YP_134632.1| - 1.6e-24 86.4 0.0 2.5e-07 30.8 0.0 4.4 4 0 0 4 4 4 4 GAF domain GAF PF01590.21 gi|55376781|ref|YP_134632.1| - 1.5e-20 73.8 0.1 2.2e-06 27.8 0.0 4.1 4 0 0 4 4 4 3 GAF domain Response_reg PF00072.19 gi|55376781|ref|YP_134632.1| - 4.6e-19 68.4 0.0 1.6e-18 66.7 0.0 2.0 2 0 0 2 2 1 1 Response regulator receiver domain HTH_10 PF04967.7 gi|55376781|ref|YP_134632.1| - 1.8e-16 59.4 0.0 7.1e-16 57.5 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain OKR_DC_1_N PF03709.10 gi|55376781|ref|YP_134632.1| - 6.9e-07 29.3 0.3 1.4e-05 25.1 0.0 3.1 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Sigma70_r4 PF04545.11 gi|55376781|ref|YP_134632.1| - 0.00035 19.8 0.0 0.0018 17.5 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|55376781|ref|YP_134632.1| - 0.0017 17.7 0.2 0.17 11.3 0.0 3.6 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|55376781|ref|YP_134632.1| - 0.0029 17.2 0.0 0.0075 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|55376781|ref|YP_134632.1| - 0.0051 16.0 0.0 0.028 13.7 0.0 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|55376781|ref|YP_134632.1| - 0.0052 16.5 0.1 0.044 13.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain DUF1492 PF07374.6 gi|55376781|ref|YP_134632.1| - 0.36 10.9 1.8 26 4.9 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF1492) DUF4250 PF14056.1 gi|55376782|ref|YP_134633.1| - 0.15 11.7 0.1 0.33 10.7 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) AAA_13 PF13166.1 gi|55376783|ref|YP_134634.1| - 3.7e-08 32.3 34.1 1.5e-05 23.7 23.7 3.3 1 1 0 1 1 1 1 AAA domain IncA PF04156.9 gi|55376783|ref|YP_134634.1| - 4.5e-07 29.6 62.9 0.0012 18.5 6.4 4.2 1 1 3 4 4 4 2 IncA protein FliJ PF02050.11 gi|55376783|ref|YP_134634.1| - 2.3e-06 27.6 39.0 0.00044 20.3 5.3 5.6 4 2 2 6 6 6 3 Flagellar FliJ protein CENP-F_leu_zip PF10473.4 gi|55376783|ref|YP_134634.1| - 3.8e-06 26.8 56.2 0.0081 16.0 6.1 4.9 2 2 2 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SMC_N PF02463.14 gi|55376783|ref|YP_134634.1| - 2.1e-05 23.8 1.3 0.016 14.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF869 PF05911.6 gi|55376783|ref|YP_134634.1| - 6.3e-05 21.4 26.9 9.1e-05 20.8 18.6 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) WEMBL PF05701.6 gi|55376783|ref|YP_134634.1| - 7.1e-05 21.4 50.1 0.011 14.2 10.9 3.1 2 1 1 3 3 3 2 Weak chloroplast movement under blue light AAA_23 PF13476.1 gi|55376783|ref|YP_134634.1| - 7.7e-05 23.1 38.1 4.3 7.5 26.4 4.0 1 1 0 1 1 1 0 AAA domain Cast PF10174.4 gi|55376783|ref|YP_134634.1| - 8.7e-05 20.7 59.3 0.012 13.7 18.2 2.1 1 1 0 2 2 2 2 RIM-binding protein of the cytomatrix active zone AAA_21 PF13304.1 gi|55376783|ref|YP_134634.1| - 0.00012 22.1 0.0 0.0036 17.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain Atg14 PF10186.4 gi|55376783|ref|YP_134634.1| - 0.00013 20.9 10.5 0.00013 20.9 7.3 3.5 2 2 1 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 DUF3584 PF12128.3 gi|55376783|ref|YP_134634.1| - 0.00056 17.4 51.9 0.00058 17.3 33.5 2.3 2 1 0 2 2 2 1 Protein of unknown function (DUF3584) Spc7 PF08317.6 gi|55376783|ref|YP_134634.1| - 0.0012 17.6 47.2 0.018 13.7 3.6 3.2 1 1 1 3 3 3 3 Spc7 kinetochore protein Laminin_II PF06009.7 gi|55376783|ref|YP_134634.1| - 0.0018 18.0 33.7 0.42 10.3 5.5 4.2 1 1 3 4 4 4 3 Laminin Domain II DUF1664 PF07889.7 gi|55376783|ref|YP_134634.1| - 0.0037 17.0 27.5 0.099 12.4 1.5 4.6 3 1 1 4 4 4 1 Protein of unknown function (DUF1664) GAS PF13851.1 gi|55376783|ref|YP_134634.1| - 0.0042 16.3 44.5 0.036 13.2 4.6 4.1 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|55376783|ref|YP_134634.1| - 0.0054 16.5 60.2 0.23 11.3 15.1 4.3 2 2 1 3 3 3 3 Tropomyosin like YscO PF07321.7 gi|55376783|ref|YP_134634.1| - 0.01 15.6 12.6 0.01 15.6 8.7 4.7 2 2 1 4 4 4 0 Type III secretion protein YscO Filament PF00038.16 gi|55376783|ref|YP_134634.1| - 0.011 15.2 5.7 0.011 15.2 4.0 4.2 1 1 1 3 3 3 0 Intermediate filament protein NPV_P10 PF05531.7 gi|55376783|ref|YP_134634.1| - 0.012 15.7 27.4 0.24 11.6 1.3 6.0 3 1 2 5 5 5 0 Nucleopolyhedrovirus P10 protein PspA_IM30 PF04012.7 gi|55376783|ref|YP_134634.1| - 0.014 14.8 52.8 0.69 9.2 15.7 3.7 2 2 1 3 3 3 0 PspA/IM30 family Baculo_PEP_C PF04513.7 gi|55376783|ref|YP_134634.1| - 0.021 14.6 24.6 0.075 12.8 0.6 4.4 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus TPR_MLP1_2 PF07926.7 gi|55376783|ref|YP_134634.1| - 0.058 13.1 51.4 0.2 11.4 9.8 5.3 1 1 4 5 5 5 0 TPR/MLP1/MLP2-like protein FlaC_arch PF05377.6 gi|55376783|ref|YP_134634.1| - 0.07 13.0 26.2 14 5.6 0.1 7.3 3 2 5 8 8 8 0 Flagella accessory protein C (FlaC) Med14 PF08638.6 gi|55376783|ref|YP_134634.1| - 0.075 12.2 1.8 0.31 10.2 0.0 2.7 3 1 0 4 4 3 0 Mediator complex subunit MED14 AAA_27 PF13514.1 gi|55376783|ref|YP_134634.1| - 0.085 10.5 55.7 1.1 6.8 20.7 2.3 1 1 1 2 2 2 0 AAA domain Seryl_tRNA_N PF02403.17 gi|55376783|ref|YP_134634.1| - 0.085 12.8 46.0 0.079 12.9 5.2 4.9 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain MscS_porin PF12795.2 gi|55376783|ref|YP_134634.1| - 0.13 11.5 59.7 0.084 12.1 14.4 3.9 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain Reo_sigmaC PF04582.7 gi|55376783|ref|YP_134634.1| - 0.16 11.0 22.0 0.034 13.3 4.3 3.6 1 1 3 4 4 4 0 Reovirus sigma C capsid protein COG2 PF06148.6 gi|55376783|ref|YP_134634.1| - 0.18 11.6 35.8 0.62 9.9 1.4 5.5 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Prefoldin_2 PF01920.15 gi|55376783|ref|YP_134634.1| - 0.67 9.7 51.1 1.9 8.2 2.9 7.8 3 3 4 7 7 7 0 Prefoldin subunit HALZ PF02183.13 gi|55376783|ref|YP_134634.1| - 0.71 9.6 15.9 3.9 7.2 0.5 5.5 5 0 0 5 5 5 0 Homeobox associated leucine zipper ISG65-75 PF11727.3 gi|55376783|ref|YP_134634.1| - 1.2 8.1 28.4 0.021 13.9 5.0 3.4 2 2 1 3 3 3 0 Invariant surface glycoprotein ATG16 PF08614.6 gi|55376783|ref|YP_134634.1| - 1.2 8.9 53.0 2.2 8.0 13.8 4.4 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) HR1 PF02185.11 gi|55376783|ref|YP_134634.1| - 1.3 8.7 42.0 0.45 10.2 3.0 5.8 5 2 0 5 5 5 0 Hr1 repeat TMF_DNA_bd PF12329.3 gi|55376783|ref|YP_134634.1| - 1.7 8.4 57.1 0.79 9.5 3.6 6.6 3 2 1 5 5 5 0 TATA element modulatory factor 1 DNA binding Syntaxin_2 PF14523.1 gi|55376783|ref|YP_134634.1| - 1.7 8.6 28.5 7.1 6.7 2.7 4.1 2 2 2 4 4 4 0 Syntaxin-like protein DUF4200 PF13863.1 gi|55376783|ref|YP_134634.1| - 2.1 8.3 49.4 0.79 9.6 8.8 5.0 3 2 1 4 4 4 0 Domain of unknown function (DUF4200) TMF_TATA_bd PF12325.3 gi|55376783|ref|YP_134634.1| - 2.7 7.7 58.5 0.057 13.1 4.9 6.0 2 2 3 6 6 5 0 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|55376783|ref|YP_134634.1| - 3.8 6.4 52.0 0.28 10.1 11.3 4.0 1 1 3 4 4 4 0 Autophagy protein Apg6 KaiC PF06745.8 gi|55376783|ref|YP_134634.1| - 5.2 6.1 11.0 0.88 8.6 1.0 2.7 2 1 1 3 3 3 0 KaiC PEARLI-4 PF05278.7 gi|55376783|ref|YP_134634.1| - 5.5 6.2 31.2 0.55 9.5 0.5 4.1 2 2 2 4 4 4 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF2353 PF09789.4 gi|55376783|ref|YP_134634.1| - 5.8 6.0 43.9 77 2.3 22.7 3.5 1 1 1 2 2 1 0 Uncharacterized coiled-coil protein (DUF2353) MCPsignal PF00015.16 gi|55376783|ref|YP_134634.1| - 5.9 6.3 28.1 1.9 7.9 7.6 3.3 1 1 2 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.1 gi|55376783|ref|YP_134634.1| - 8.5 6.7 32.4 2.8 8.3 0.9 4.7 3 1 2 5 5 5 0 Snapin/Pallidin DUF904 PF06005.7 gi|55376783|ref|YP_134634.1| - 9.5 6.6 36.8 0.58 10.4 5.7 5.2 3 2 2 5 5 5 0 Protein of unknown function (DUF904) zinc_ribbon_2 PF13240.1 gi|55376784|ref|YP_134635.1| - 0.47 10.0 2.4 0.4 10.2 0.3 1.7 2 0 0 2 2 2 0 zinc-ribbon domain NAD_synthase PF02540.12 gi|55376785|ref|YP_134636.1| - 1.2e-31 109.4 0.0 1.4e-31 109.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase S-methyl_trans PF02574.11 gi|55376785|ref|YP_134636.1| - 0.022 14.0 0.0 0.031 13.5 0.0 1.1 1 0 0 1 1 1 0 Homocysteine S-methyltransferase HTH_23 PF13384.1 gi|55376785|ref|YP_134636.1| - 0.083 12.5 0.0 0.19 11.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Ribosomal_S17e PF00833.13 gi|55376786|ref|YP_134637.1| - 0.0093 15.7 0.0 0.0096 15.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal S17 DegS PF05384.6 gi|55376786|ref|YP_134637.1| - 0.099 11.8 0.1 0.1 11.7 0.0 1.0 1 0 0 1 1 1 0 Sensor protein DegS Amidohydro_1 PF01979.15 gi|55376787|ref|YP_134638.1| - 3.8e-50 171.4 0.2 4.8e-50 171.1 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|55376787|ref|YP_134638.1| - 3.2e-14 53.6 1.1 4.9e-13 49.7 0.7 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|55376787|ref|YP_134638.1| - 4.2e-05 23.2 0.6 0.0002 21.1 0.0 2.5 3 0 0 3 3 3 1 Amidohydrolase A_deaminase PF00962.17 gi|55376787|ref|YP_134638.1| - 0.017 14.0 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase DisA_N PF02457.11 gi|55376787|ref|YP_134638.1| - 0.058 12.5 0.0 0.16 11.1 0.0 1.7 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding BPD_transp_1 PF00528.17 gi|55376788|ref|YP_134639.1| - 2.5e-16 59.7 6.0 2.5e-16 59.7 4.2 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AAA_21 PF13304.1 gi|55376789|ref|YP_134640.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain Phosphonate-bd PF12974.2 gi|55376790|ref|YP_134641.1| - 6.2e-54 182.9 4.2 7.4e-54 182.7 2.9 1.0 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|55376790|ref|YP_134641.1| - 0.019 14.1 0.0 0.084 12.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 DUF1543 PF07566.7 gi|55376790|ref|YP_134641.1| - 0.089 12.3 0.1 16 5.1 0.0 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1543) Varsurf_PPLC PF03490.8 gi|55376790|ref|YP_134641.1| - 0.14 11.8 2.3 0.16 11.6 0.1 2.3 3 0 0 3 3 3 0 Variant-surface-glycoprotein phospholipase C TAT_signal PF10518.4 gi|55376790|ref|YP_134641.1| - 1 9.5 4.1 0.58 10.3 0.8 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Ribonuc_L-PSP PF01042.16 gi|55376791|ref|YP_134642.1| - 7.2e-39 132.2 0.1 8e-39 132.1 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP NTP_transf_3 PF12804.2 gi|55376792|ref|YP_134643.1| - 2.2e-37 128.6 0.2 2.7e-37 128.3 0.2 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|55376792|ref|YP_134643.1| - 0.003 17.1 0.3 0.0043 16.6 0.2 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TusA PF01206.12 gi|55376794|ref|YP_134645.1| - 1e-14 53.8 0.0 1.1e-14 53.7 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|55376794|ref|YP_134645.1| - 0.015 14.8 0.1 0.018 14.6 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DUF1930 PF09122.5 gi|55376794|ref|YP_134645.1| - 0.14 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) AIRS_C PF02769.17 gi|55376795|ref|YP_134646.1| - 9.8e-18 64.6 0.0 1.5e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain XdhC_C PF13478.1 gi|55376796|ref|YP_134647.1| - 1e-34 119.7 1.7 1.1e-32 113.1 0.1 2.2 2 0 0 2 2 2 2 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|55376796|ref|YP_134647.1| - 8.3e-22 76.5 2.0 2.6e-21 75.0 0.1 2.8 2 0 0 2 2 2 1 XdhC and CoxI family Pyr_redox PF00070.22 gi|55376796|ref|YP_134647.1| - 0.0016 18.8 1.8 0.0053 17.1 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|55376796|ref|YP_134647.1| - 0.0054 16.5 1.3 0.014 15.2 0.1 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|55376796|ref|YP_134647.1| - 0.0055 16.6 1.0 2.1 8.3 0.1 2.6 2 0 0 2 2 2 2 TrkA-N domain 3HCDH_N PF02737.13 gi|55376796|ref|YP_134647.1| - 0.011 15.4 1.9 0.34 10.5 0.2 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DRTGG PF07085.7 gi|55376796|ref|YP_134647.1| - 0.037 13.6 0.0 0.45 10.1 0.0 2.5 2 0 0 2 2 2 0 DRTGG domain 2-Hacid_dh_C PF02826.14 gi|55376796|ref|YP_134647.1| - 0.07 12.2 0.6 5.7 6.0 0.0 2.6 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DsrH PF04077.7 gi|55376797|ref|YP_134648.1| - 3e-05 23.6 0.5 0.00049 19.7 0.3 2.0 1 1 0 1 1 1 1 DsrH like protein SurA_N PF09312.6 gi|55376797|ref|YP_134648.1| - 0.0072 16.1 0.1 0.0088 15.8 0.1 1.1 1 0 0 1 1 1 1 SurA N-terminal domain DrsE PF02635.10 gi|55376798|ref|YP_134649.1| - 2.2e-14 53.5 0.1 2.4e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.10 gi|55376799|ref|YP_134650.1| - 1.9e-26 92.4 0.0 2.2e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Ald_Xan_dh_C2 PF02738.13 gi|55376800|ref|YP_134651.1| - 8.7e-131 436.9 0.0 1.1e-130 436.5 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|55376800|ref|YP_134651.1| - 1.6e-11 44.2 0.1 3.9e-11 43.0 0.0 1.7 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF1846 PF08903.6 gi|55376800|ref|YP_134651.1| - 0.053 11.9 0.0 0.077 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) Fer2_2 PF01799.15 gi|55376801|ref|YP_134652.1| - 1.2e-36 124.4 0.6 1.8e-35 120.6 0.0 2.2 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|55376801|ref|YP_134652.1| - 1.7e-09 37.2 0.9 1.7e-09 37.2 0.6 2.9 3 1 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|55376801|ref|YP_134652.1| - 1.1e-05 25.1 0.6 3.5e-05 23.5 0.2 1.9 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|55376801|ref|YP_134652.1| - 3.4e-05 23.5 1.1 0.00015 21.4 0.8 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|55376802|ref|YP_134653.1| - 1.2e-131 439.7 0.6 1.7e-131 439.2 0.4 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|55376802|ref|YP_134653.1| - 1.6e-24 86.0 1.1 3.1e-24 85.2 0.8 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|55376803|ref|YP_134654.1| - 4.7e-31 106.5 0.0 9e-31 105.6 0.0 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|55376803|ref|YP_134654.1| - 1.2e-05 25.0 1.1 1.2e-05 25.0 0.8 3.1 3 1 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|55376803|ref|YP_134654.1| - 0.0012 18.6 0.5 0.0022 17.7 0.4 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF4186 PF13811.1 gi|55376803|ref|YP_134654.1| - 0.15 11.7 0.8 0.23 11.1 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4186) Peptidase_M20 PF01546.23 gi|55376804|ref|YP_134655.1| - 1e-24 87.1 0.4 1.5e-24 86.5 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|55376804|ref|YP_134655.1| - 1.2e-07 31.4 0.0 2.5e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|55376804|ref|YP_134655.1| - 0.0027 17.4 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 D-aminoacyl_C PF07908.7 gi|55376805|ref|YP_134656.1| - 4.4e-16 57.9 0.4 1.4e-15 56.2 0.0 2.1 2 0 0 2 2 2 1 D-aminoacylase, C-terminal region Amidohydro_5 PF13594.1 gi|55376805|ref|YP_134656.1| - 4.5e-13 48.7 0.0 2.3e-12 46.5 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|55376805|ref|YP_134656.1| - 8.8e-11 42.3 9.6 6.3e-08 32.9 6.7 2.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55376805|ref|YP_134656.1| - 7.8e-09 35.2 1.7 5.1e-08 32.5 1.2 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|55376805|ref|YP_134656.1| - 2e-07 30.9 0.0 0.00027 20.7 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Bmp PF02608.9 gi|55376806|ref|YP_134657.1| - 1.2e-40 139.1 0.0 1.5e-40 138.8 0.0 1.0 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|55376806|ref|YP_134657.1| - 0.023 14.6 2.3 0.056 13.4 1.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Bmp PF02608.9 gi|55376807|ref|YP_134658.1| - 8.1e-40 136.4 0.0 1e-39 136.0 0.0 1.0 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|55376807|ref|YP_134658.1| - 0.49 10.5 2.9 1.7 8.8 2.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|55376808|ref|YP_134659.1| - 3.9e-47 160.0 0.0 4.6e-29 101.4 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|55376808|ref|YP_134659.1| - 1.4e-10 41.6 2.7 5.4e-09 36.4 0.5 2.5 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|55376808|ref|YP_134659.1| - 6.2e-05 22.5 0.3 1.5 8.1 0.0 3.2 3 0 0 3 3 3 2 AAA-like domain AAA_15 PF13175.1 gi|55376808|ref|YP_134659.1| - 0.0013 17.9 0.1 0.46 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|55376808|ref|YP_134659.1| - 0.0066 15.9 0.0 0.021 14.3 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|55376808|ref|YP_134659.1| - 0.019 14.1 0.1 0.1 11.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|55376808|ref|YP_134659.1| - 0.062 13.6 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|55376808|ref|YP_134659.1| - 0.16 12.1 0.2 8.1 6.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|55376808|ref|YP_134659.1| - 0.16 11.8 2.6 13 5.7 0.0 3.1 3 0 0 3 3 3 0 AAA ATPase domain Bac_DnaA PF00308.13 gi|55376808|ref|YP_134659.1| - 0.18 11.4 0.0 0.31 10.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_13 PF13166.1 gi|55376808|ref|YP_134659.1| - 0.38 9.1 0.0 0.6 8.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|55376809|ref|YP_134660.1| - 4.2e-39 134.1 31.3 4.2e-39 134.1 21.7 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|55376810|ref|YP_134661.1| - 1.6e-38 132.2 31.2 1.6e-38 132.2 21.6 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Bac_luciferase PF00296.15 gi|55376811|ref|YP_134662.1| - 7.2e-54 182.9 0.1 9e-54 182.6 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Xan_ur_permease PF00860.15 gi|55376812|ref|YP_134663.1| - 3.6e-90 302.2 44.8 4.8e-90 301.8 31.1 1.2 1 0 0 1 1 1 1 Permease family PALP PF00291.20 gi|55376813|ref|YP_134664.1| - 5e-63 213.1 0.8 6.1e-63 212.8 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|55376813|ref|YP_134664.1| - 0.016 14.7 1.3 1.4 8.4 0.0 2.4 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Amidohydro_4 PF13147.1 gi|55376814|ref|YP_134665.1| - 1.6e-23 84.1 6.1 1.6e-23 84.1 4.2 1.6 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|55376814|ref|YP_134665.1| - 2.8e-12 46.9 0.0 4.5e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|55376814|ref|YP_134665.1| - 5.5e-10 38.9 2.2 5.5e-10 38.9 1.5 2.5 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55376814|ref|YP_134665.1| - 0.12 11.5 3.2 0.34 10.0 0.0 2.5 2 1 0 2 2 2 0 Amidohydrolase family Amidohydro_1 PF01979.15 gi|55376815|ref|YP_134666.1| - 1.9e-37 129.6 1.1 2.6e-37 129.2 0.8 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|55376815|ref|YP_134666.1| - 4.5e-14 52.0 0.1 3.7e-13 49.0 0.0 2.5 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|55376815|ref|YP_134666.1| - 1.2e-11 44.5 4.1 2.8e-09 36.6 0.7 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|55376815|ref|YP_134666.1| - 1.7e-10 41.3 0.0 6.4e-09 36.2 0.0 2.5 1 1 0 1 1 1 1 Amidohydrolase HTH_IclR PF09339.5 gi|55376816|ref|YP_134667.1| - 0.06 12.9 1.5 0.66 9.6 0.6 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|55376816|ref|YP_134667.1| - 0.095 12.8 0.2 0.26 11.4 0.2 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|55376816|ref|YP_134667.1| - 0.21 11.1 3.5 1.5 8.4 0.9 2.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain zinc_ribbon_2 PF13240.1 gi|55376817|ref|YP_134668.1| - 0.15 11.6 0.7 0.34 10.4 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|55376818|ref|YP_134669.1| - 0.1 12.4 0.6 0.18 11.6 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|55376818|ref|YP_134669.1| - 0.26 10.5 2.8 1.2 8.4 0.4 2.1 1 1 2 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55376818|ref|YP_134669.1| - 1 9.2 4.6 4.2 7.2 3.2 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|55376818|ref|YP_134669.1| - 3.6 7.6 6.9 1.3 9.0 0.5 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Peptidase_A24 PF01478.13 gi|55376819|ref|YP_134670.1| - 0.054 13.6 9.0 0.12 12.4 6.3 1.8 1 1 0 1 1 1 0 Type IV leader peptidase family AMP-binding PF00501.23 gi|55376820|ref|YP_134671.1| - 6.5e-51 173.0 0.1 9.3e-51 172.5 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Hemerythrin PF01814.18 gi|55376820|ref|YP_134671.1| - 6e-11 42.6 7.8 6e-11 42.6 5.4 2.3 3 0 0 3 3 3 1 Hemerythrin HHE cation binding domain Pyridox_ox_2 PF12900.2 gi|55376821|ref|YP_134672.1| - 3.2e-13 49.6 0.0 3.8e-13 49.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|55376821|ref|YP_134672.1| - 8.7e-06 25.6 0.0 1.3e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF756 PF05506.7 gi|55376821|ref|YP_134672.1| - 0.1 13.0 0.0 0.2 12.1 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF756) SHOCT PF09851.4 gi|55376822|ref|YP_134673.1| - 1.1e-05 24.6 0.7 1.5e-05 24.3 0.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|55376822|ref|YP_134673.1| - 0.0064 16.2 1.1 0.0096 15.7 0.8 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF4381 PF14316.1 gi|55376822|ref|YP_134673.1| - 0.009 16.1 0.1 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) DUF1707 PF08044.6 gi|55376822|ref|YP_134673.1| - 0.019 14.7 0.2 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF2231 PF09990.4 gi|55376822|ref|YP_134673.1| - 0.036 14.4 0.1 0.045 14.1 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) CSF-1 PF05337.6 gi|55376822|ref|YP_134673.1| - 0.1 11.9 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 Macrophage colony stimulating factor-1 (CSF-1) Methyltransf_11 PF08241.7 gi|55376823|ref|YP_134674.1| - 4.4e-14 52.7 0.0 7.3e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55376823|ref|YP_134674.1| - 7.3e-12 45.2 0.1 9.3e-12 44.9 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55376823|ref|YP_134674.1| - 1.3e-10 41.5 0.0 2.2e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55376823|ref|YP_134674.1| - 3.5e-09 37.2 0.1 5.4e-09 36.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55376823|ref|YP_134674.1| - 6.6e-09 35.5 0.0 7.6e-09 35.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55376823|ref|YP_134674.1| - 1.5e-08 34.6 0.0 2.3e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|55376823|ref|YP_134674.1| - 3.2e-08 33.1 0.0 4.7e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|55376823|ref|YP_134674.1| - 5.3e-08 33.2 0.0 7.9e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|55376823|ref|YP_134674.1| - 0.0017 17.7 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|55376823|ref|YP_134674.1| - 0.0022 17.1 0.0 0.0029 16.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB DUF938 PF06080.7 gi|55376823|ref|YP_134674.1| - 0.0056 16.2 0.0 0.0079 15.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_24 PF13578.1 gi|55376823|ref|YP_134674.1| - 0.0063 17.3 0.1 0.017 15.9 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|55376823|ref|YP_134674.1| - 0.02 13.5 0.0 0.027 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.11 gi|55376823|ref|YP_134674.1| - 0.062 12.1 0.0 0.078 11.8 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_4 PF02390.12 gi|55376823|ref|YP_134674.1| - 0.14 11.1 0.0 0.21 10.6 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase DUF3939 PF13075.1 gi|55376824|ref|YP_134675.1| - 0.13 11.9 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) DZR PF12773.2 gi|55376824|ref|YP_134675.1| - 0.22 11.3 12.3 17 5.2 8.5 2.8 1 1 0 1 1 1 0 Double zinc ribbon RNHCP PF12647.2 gi|55376824|ref|YP_134675.1| - 2.2 8.1 8.7 0.18 11.6 1.8 2.1 2 1 0 2 2 2 0 RNHCP domain zf-MYND PF01753.13 gi|55376824|ref|YP_134675.1| - 6.2 6.7 7.8 36 4.3 3.1 2.7 2 1 0 2 2 2 0 MYND finger EamA PF00892.15 gi|55376825|ref|YP_134676.1| - 9.1e-35 119.4 28.0 8.1e-18 64.6 10.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|55376825|ref|YP_134676.1| - 6.3e-09 36.0 2.5 6.3e-09 36.0 1.7 3.4 1 1 1 3 3 3 1 Multidrug resistance efflux transporter Leu_leader PF08054.6 gi|55376825|ref|YP_134676.1| - 0.12 11.9 0.4 0.48 10.1 0.3 2.1 1 0 0 1 1 1 0 Leucine operon leader peptide DUF914 PF06027.7 gi|55376825|ref|YP_134676.1| - 0.49 9.1 7.1 8.1 5.1 5.2 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF914) ATP1G1_PLM_MAT8 PF02038.11 gi|55376825|ref|YP_134676.1| - 1.2 8.2 5.0 0.7 8.9 0.1 2.8 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family RPE65 PF03055.10 gi|55376826|ref|YP_134677.1| - 1.5e-112 376.6 0.0 1.7e-112 376.5 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein Pyr_redox_2 PF07992.9 gi|55376827|ref|YP_134678.1| - 9.6e-09 35.4 0.0 1.4e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55376827|ref|YP_134678.1| - 1e-08 34.5 8.4 5.9e-05 22.1 0.4 3.5 2 1 2 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|55376827|ref|YP_134678.1| - 1.2e-05 24.4 0.3 3e-05 23.0 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|55376827|ref|YP_134678.1| - 1.3e-05 24.2 2.0 4.7e-05 22.4 0.2 2.0 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|55376827|ref|YP_134678.1| - 2.4e-05 23.5 0.7 5e-05 22.5 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|55376827|ref|YP_134678.1| - 9.7e-05 21.6 1.2 9.7e-05 21.6 0.8 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55376827|ref|YP_134678.1| - 0.0005 20.0 0.1 0.0012 18.7 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|55376827|ref|YP_134678.1| - 0.0007 18.1 0.1 0.0026 16.3 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|55376827|ref|YP_134678.1| - 0.0009 18.4 0.0 0.0019 17.3 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|55376827|ref|YP_134678.1| - 0.002 18.2 1.6 1.3 9.0 0.1 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|55376827|ref|YP_134678.1| - 0.094 12.3 0.1 0.26 10.9 0.0 1.9 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|55376827|ref|YP_134678.1| - 2.3 7.9 9.9 3.1 7.5 0.1 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding FecCD PF01032.13 gi|55376828|ref|YP_134679.1| - 2.4e-89 299.2 37.3 3e-89 298.9 25.8 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|55376828|ref|YP_134679.1| - 0.00044 19.6 12.0 0.00044 19.6 8.3 2.5 2 1 1 3 3 3 1 ABC 3 transport family ABC_tran PF00005.22 gi|55376829|ref|YP_134680.1| - 1.8e-30 106.0 0.0 2.7e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|55376829|ref|YP_134680.1| - 5.5e-13 49.5 0.7 1e-05 25.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|55376829|ref|YP_134680.1| - 2.1e-11 43.4 0.1 5.1e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|55376829|ref|YP_134680.1| - 1.1e-06 28.8 2.4 1.4e-05 25.2 1.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|55376829|ref|YP_134680.1| - 6.3e-06 25.4 0.6 0.017 14.1 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|55376829|ref|YP_134680.1| - 6.8e-06 25.5 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55376829|ref|YP_134680.1| - 1.6e-05 24.9 4.0 0.00011 22.2 2.8 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|55376829|ref|YP_134680.1| - 3.1e-05 23.8 0.2 0.00017 21.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|55376829|ref|YP_134680.1| - 0.00012 20.8 0.6 0.29 9.6 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|55376829|ref|YP_134680.1| - 0.00037 21.2 0.2 0.0012 19.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|55376829|ref|YP_134680.1| - 0.00048 20.5 0.1 0.00086 19.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|55376829|ref|YP_134680.1| - 0.0006 19.2 3.4 0.0067 15.8 2.3 2.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|55376829|ref|YP_134680.1| - 0.0018 17.9 0.1 0.004 16.8 0.0 1.6 2 0 0 2 2 1 1 NACHT domain SRP54 PF00448.17 gi|55376829|ref|YP_134680.1| - 0.0021 17.5 0.0 0.0037 16.7 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|55376829|ref|YP_134680.1| - 0.0025 17.5 0.0 0.0073 16.0 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|55376829|ref|YP_134680.1| - 0.0039 16.7 0.1 0.0091 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|55376829|ref|YP_134680.1| - 0.005 16.5 0.0 0.0079 15.9 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|55376829|ref|YP_134680.1| - 0.0051 16.7 0.0 0.012 15.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain DUF258 PF03193.11 gi|55376829|ref|YP_134680.1| - 0.0055 15.8 0.3 0.0095 15.1 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|55376829|ref|YP_134680.1| - 0.0063 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|55376829|ref|YP_134680.1| - 0.0068 16.3 0.2 0.03 14.2 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|55376829|ref|YP_134680.1| - 0.0099 15.3 0.1 0.022 14.2 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA PF00004.24 gi|55376829|ref|YP_134680.1| - 0.014 15.6 0.1 0.028 14.6 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|55376829|ref|YP_134680.1| - 0.017 14.2 0.1 0.039 13.0 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin KAP_NTPase PF07693.9 gi|55376829|ref|YP_134680.1| - 0.023 13.6 0.6 0.34 9.8 0.4 2.0 1 1 0 1 1 1 0 KAP family P-loop domain ATP_bind_1 PF03029.12 gi|55376829|ref|YP_134680.1| - 0.028 13.9 0.2 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|55376829|ref|YP_134680.1| - 0.03 14.0 0.3 0.14 11.9 0.1 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|55376829|ref|YP_134680.1| - 0.032 14.5 0.2 0.065 13.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain cobW PF02492.14 gi|55376829|ref|YP_134680.1| - 0.033 13.6 0.3 0.08 12.3 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|55376829|ref|YP_134680.1| - 0.033 13.3 0.1 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|55376829|ref|YP_134680.1| - 0.046 13.9 0.0 0.08 13.1 0.0 1.5 1 1 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|55376829|ref|YP_134680.1| - 0.063 12.9 0.4 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 NTPase SbcCD_C PF13558.1 gi|55376829|ref|YP_134680.1| - 0.068 13.0 0.3 0.85 9.5 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit APS_kinase PF01583.15 gi|55376829|ref|YP_134680.1| - 0.083 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CobA_CobO_BtuR PF02572.10 gi|55376829|ref|YP_134680.1| - 0.088 12.4 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_28 PF13521.1 gi|55376829|ref|YP_134680.1| - 0.1 12.5 0.1 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|55376829|ref|YP_134680.1| - 0.23 10.2 0.6 1.5 7.5 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain Peripla_BP_2 PF01497.13 gi|55376830|ref|YP_134681.1| - 1.7e-16 60.0 0.0 2.3e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ADH_N PF08240.7 gi|55376832|ref|YP_134682.1| - 5e-27 93.8 1.0 1.3e-26 92.4 0.7 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55376832|ref|YP_134682.1| - 1.4e-23 82.8 0.9 2.4e-23 82.1 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|55376832|ref|YP_134682.1| - 1.1e-06 28.2 0.1 2.5e-06 27.0 0.1 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated NADH_4Fe-4S PF10589.4 gi|55376832|ref|YP_134682.1| - 0.37 9.9 3.6 1.8 7.8 2.5 2.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Pyr_redox_2 PF07992.9 gi|55376831|ref|YP_134683.1| - 6.8e-19 68.5 0.8 1e-14 54.8 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|55376831|ref|YP_134683.1| - 5.6e-13 48.5 0.5 1.9e-05 23.7 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|55376831|ref|YP_134683.1| - 7.1e-11 41.2 0.1 1.8e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|55376831|ref|YP_134683.1| - 1.1e-09 38.7 2.0 6.3e-05 23.1 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|55376831|ref|YP_134683.1| - 1.7e-09 37.2 0.7 6.2e-06 25.5 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|55376831|ref|YP_134683.1| - 1.1e-07 31.1 2.0 6.3e-07 28.5 0.1 2.1 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|55376831|ref|YP_134683.1| - 1.4e-06 27.6 2.8 2.8e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|55376831|ref|YP_134683.1| - 4.3e-06 26.6 0.0 1.1e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|55376831|ref|YP_134683.1| - 7.8e-06 25.7 0.2 0.036 13.8 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|55376831|ref|YP_134683.1| - 1.6e-05 23.9 0.2 0.00029 19.8 0.1 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|55376831|ref|YP_134683.1| - 6.9e-05 22.0 0.1 0.00014 21.0 0.0 1.6 1 1 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|55376831|ref|YP_134683.1| - 0.00029 21.1 0.4 0.0054 17.1 0.2 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|55376831|ref|YP_134683.1| - 0.0024 16.8 0.2 0.92 8.3 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|55376831|ref|YP_134683.1| - 0.0094 14.9 0.1 0.026 13.4 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|55376831|ref|YP_134683.1| - 0.018 15.1 0.0 2.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|55376831|ref|YP_134683.1| - 0.02 14.4 0.5 0.055 13.0 0.0 1.8 1 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|55376831|ref|YP_134683.1| - 0.067 13.4 0.0 0.17 12.1 0.0 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|55376831|ref|YP_134683.1| - 0.1 12.8 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding PALP PF00291.20 gi|55376831|ref|YP_134683.1| - 0.47 9.6 3.0 9.4 5.3 0.1 2.1 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme ThuA PF06283.6 gi|55376834|ref|YP_134685.1| - 1e-48 165.9 0.5 1.2e-48 165.7 0.4 1.0 1 0 0 1 1 1 1 Trehalose utilisation Lactate_perm PF02652.9 gi|55376835|ref|YP_134686.1| - 1.4e-101 340.6 45.8 3.5e-53 180.9 17.0 2.1 2 0 0 2 2 2 2 L-lactate permease FAD-oxidase_C PF02913.14 gi|55376836|ref|YP_134687.1| - 4.7e-66 222.6 0.0 8.8e-66 221.7 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|55376836|ref|YP_134687.1| - 1.9e-39 134.2 0.1 4.1e-39 133.2 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|55376836|ref|YP_134687.1| - 1.6e-07 31.5 3.2 3.2e-07 30.5 2.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|55376836|ref|YP_134687.1| - 2.5e-07 30.6 4.7 4.8e-07 29.6 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|55376836|ref|YP_134687.1| - 1.4e-06 28.1 0.0 0.0016 18.4 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_9 PF13187.1 gi|55376836|ref|YP_134687.1| - 0.00099 19.3 2.3 0.0078 16.4 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|55376836|ref|YP_134687.1| - 0.0011 19.2 0.3 0.0011 19.2 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain PP2C_C PF07830.8 gi|55376836|ref|YP_134687.1| - 0.014 15.4 0.1 0.096 12.8 0.0 2.2 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Fer4_21 PF14697.1 gi|55376836|ref|YP_134687.1| - 0.033 14.0 4.5 0.23 11.3 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|55376836|ref|YP_134687.1| - 0.14 11.2 0.2 0.25 10.4 0.2 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_10 PF13237.1 gi|55376836|ref|YP_134687.1| - 0.22 11.3 9.5 0.056 13.2 1.2 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|55376836|ref|YP_134687.1| - 0.25 11.7 7.0 4.3 7.7 5.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55376836|ref|YP_134687.1| - 9.8 5.9 13.2 0.18 11.4 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2101 PF09874.4 gi|55376838|ref|YP_134689.1| - 0.16 11.4 2.3 0.42 10.0 1.6 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) DUF2839 PF10999.3 gi|55376838|ref|YP_134689.1| - 7.7 6.6 6.3 8.2 6.5 0.7 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2839) HTH_20 PF12840.2 gi|55376839|ref|YP_134690.1| - 3.3e-05 23.5 0.0 5.2e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|55376839|ref|YP_134690.1| - 0.0044 16.5 0.0 0.0086 15.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|55376839|ref|YP_134690.1| - 0.0064 16.1 0.0 0.011 15.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|55376839|ref|YP_134690.1| - 0.01 15.4 0.2 0.023 14.3 0.1 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|55376839|ref|YP_134690.1| - 0.067 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.2 gi|55376839|ref|YP_134690.1| - 0.075 13.2 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Metallophos_2 PF12850.2 gi|55376840|ref|YP_134691.1| - 1.8e-12 47.3 0.2 2.5e-11 43.6 0.2 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|55376840|ref|YP_134691.1| - 0.007 15.7 3.7 1.3 8.3 1.9 2.9 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase PBC PF03792.8 gi|55376840|ref|YP_134691.1| - 0.014 15.1 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 PBC domain RadC PF04002.10 gi|55376840|ref|YP_134691.1| - 0.024 14.3 0.0 0.064 12.9 0.0 1.6 1 0 0 1 1 1 0 RadC-like JAB domain ADH_N PF08240.7 gi|55376841|ref|YP_134692.1| - 3.6e-32 110.3 3.0 8.4e-32 109.1 2.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55376841|ref|YP_134692.1| - 1.8e-22 79.2 0.4 2.8e-22 78.6 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|55376841|ref|YP_134692.1| - 3.9e-07 31.0 0.9 1.7e-06 28.9 0.1 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase TOBE_2 PF08402.5 gi|55376841|ref|YP_134692.1| - 0.074 13.0 1.7 0.26 11.3 0.2 2.7 2 0 0 2 2 2 0 TOBE domain DUF2318 PF10080.4 gi|55376841|ref|YP_134692.1| - 0.11 12.2 1.3 0.34 10.7 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) XPA_N PF01286.13 gi|55376841|ref|YP_134692.1| - 1.3 8.7 4.6 0.91 9.2 0.8 2.1 2 0 0 2 2 2 0 XPA protein N-terminal Peptidase_M48 PF01435.13 gi|55376842|ref|YP_134693.1| - 4.9e-40 137.4 0.0 5.9e-40 137.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|55376842|ref|YP_134693.1| - 3e-06 26.4 0.3 6e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|55376842|ref|YP_134693.1| - 0.012 15.6 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|55376842|ref|YP_134693.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_M19 PF01244.16 gi|55376843|ref|YP_134694.1| - 0.11 11.3 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) Aldo_ket_red PF00248.16 gi|55376844|ref|YP_134695.1| - 5.4e-60 202.6 0.0 6.7e-60 202.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family EamA PF00892.15 gi|55376845|ref|YP_134696.1| - 2e-34 118.3 30.1 3.7e-17 62.5 8.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|55376845|ref|YP_134696.1| - 4e-07 29.8 17.7 0.0012 18.4 1.0 2.7 3 0 0 3 3 3 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|55376845|ref|YP_134696.1| - 0.0012 18.9 13.7 0.0012 18.9 9.5 3.8 1 1 2 3 3 3 2 Multidrug resistance efflux transporter RseC_MucC PF04246.7 gi|55376845|ref|YP_134696.1| - 0.011 15.2 1.0 0.011 15.2 0.7 3.5 3 2 3 6 6 6 0 Positive regulator of sigma(E), RseC/MucC NAD_binding_10 PF13460.1 gi|55376846|ref|YP_134697.1| - 1.5e-25 90.2 5.1 2e-25 89.8 3.5 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|55376846|ref|YP_134697.1| - 6.1e-10 38.7 0.0 1.1e-09 37.9 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|55376846|ref|YP_134697.1| - 1.4e-07 30.4 0.0 2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|55376846|ref|YP_134697.1| - 1.7e-07 30.9 0.0 2.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.19 gi|55376846|ref|YP_134697.1| - 1.6e-05 25.1 0.1 2.5e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|55376846|ref|YP_134697.1| - 0.037 13.9 5.1 0.12 12.2 1.3 2.4 1 1 1 2 2 2 0 short chain dehydrogenase KR PF08659.5 gi|55376846|ref|YP_134697.1| - 0.05 13.2 0.7 0.19 11.3 0.2 2.0 1 1 1 2 2 2 0 KR domain Bac_luciferase PF00296.15 gi|55376847|ref|YP_134698.1| - 4.7e-49 167.1 2.1 4.7e-49 167.1 1.4 1.8 1 1 1 2 2 2 1 Luciferase-like monooxygenase DUF2761 PF10959.3 gi|55376847|ref|YP_134698.1| - 0.067 12.8 0.7 0.35 10.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2761) Methyltransf_18 PF12847.2 gi|55376848|ref|YP_134699.1| - 8.2e-15 55.3 0.0 1.2e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55376848|ref|YP_134699.1| - 2.3e-09 37.1 0.0 5.8e-09 35.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|55376848|ref|YP_134699.1| - 5.2e-09 35.5 0.0 6.6e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_26 PF13659.1 gi|55376848|ref|YP_134699.1| - 2e-08 34.2 0.5 4.3e-08 33.1 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|55376848|ref|YP_134699.1| - 2.1e-08 34.5 0.0 3.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|55376848|ref|YP_134699.1| - 2.6e-08 33.6 0.0 3.1e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55376848|ref|YP_134699.1| - 3.3e-08 33.8 0.0 5e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55376848|ref|YP_134699.1| - 9.5e-08 31.4 0.0 1.3e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|55376848|ref|YP_134699.1| - 3.6e-06 26.4 0.0 6.4e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|55376848|ref|YP_134699.1| - 1.4e-05 24.7 0.0 1.8e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.13 gi|55376848|ref|YP_134699.1| - 0.00027 20.5 0.0 0.00038 20.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|55376848|ref|YP_134699.1| - 0.00043 20.6 0.0 0.00088 19.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|55376848|ref|YP_134699.1| - 0.048 13.1 0.0 0.068 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|55376848|ref|YP_134699.1| - 0.051 12.6 0.0 0.066 12.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|55376848|ref|YP_134699.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_3 PF01596.12 gi|55376848|ref|YP_134699.1| - 0.14 11.1 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase DUF726 PF05277.7 gi|55376849|ref|YP_134700.1| - 2.6e-13 49.5 0.0 3.3e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF726) DUF900 PF05990.7 gi|55376849|ref|YP_134700.1| - 7.7e-12 45.0 0.0 9.7e-12 44.6 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_5 PF12695.2 gi|55376849|ref|YP_134700.1| - 5.3e-05 22.9 1.3 8.2e-05 22.3 0.9 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|55376849|ref|YP_134700.1| - 0.00056 19.8 5.1 0.00086 19.2 3.5 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Lipase PF00151.14 gi|55376849|ref|YP_134700.1| - 0.00079 18.7 0.0 0.0011 18.2 0.0 1.1 1 0 0 1 1 1 1 Lipase Lipase_2 PF01674.13 gi|55376849|ref|YP_134700.1| - 0.0061 15.8 0.0 0.0098 15.2 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 2) Wzy_C PF04932.10 gi|55376850|ref|YP_134701.1| - 0.48 10.1 2.7 0.49 10.1 1.9 1.1 1 0 0 1 1 1 0 O-Antigen ligase ATPase_gene1 PF09527.5 gi|55376850|ref|YP_134701.1| - 0.6 9.9 10.9 8 6.3 0.0 2.1 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) PepSY_TM_2 PF13703.1 gi|55376850|ref|YP_134701.1| - 2.5 8.3 7.1 1.7 8.8 3.8 1.7 1 1 0 1 1 1 0 PepSY-associated TM helix DUF2929 PF11151.3 gi|55376850|ref|YP_134701.1| - 4.5 7.4 6.8 3.4 7.8 3.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2929) DUF3487 PF11990.3 gi|55376850|ref|YP_134701.1| - 7.4 5.9 7.0 11 5.4 4.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF3267 PF11667.3 gi|55376851|ref|YP_134702.1| - 5.6e-22 78.0 1.3 5.6e-22 78.0 0.9 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) Metallophos PF00149.23 gi|55376852|ref|YP_134703.1| - 9.3e-09 34.9 0.4 1.9e-08 33.9 0.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|55376852|ref|YP_134703.1| - 3.3e-08 33.5 0.0 4.4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PP_kinase_C PF13090.1 gi|55376853|ref|YP_134704.1| - 1.2e-152 507.5 0.0 1.6e-152 507.1 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|55376853|ref|YP_134704.1| - 2.8e-60 203.3 1.4 5.2e-60 202.4 1.0 1.5 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|55376853|ref|YP_134704.1| - 1.6e-36 124.6 0.1 4.8e-36 123.1 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|55376853|ref|YP_134704.1| - 2.7e-10 40.0 0.0 1.3e-05 24.9 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain AIM24 PF01987.12 gi|55376854|ref|YP_134705.1| - 1.6e-44 151.9 2.4 1.9e-44 151.7 1.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Methyltransf_11 PF08241.7 gi|55376855|ref|YP_134706.1| - 1e-15 57.9 0.0 1.1e-14 54.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|55376855|ref|YP_134706.1| - 9.3e-11 41.7 0.0 1.1e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|55376855|ref|YP_134706.1| - 1.9e-09 37.0 0.0 3.3e-09 36.1 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|55376855|ref|YP_134706.1| - 1.9e-09 37.2 0.0 2.3e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|55376855|ref|YP_134706.1| - 1.2e-08 35.3 0.0 2.9e-08 34.0 0.0 1.6 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|55376855|ref|YP_134706.1| - 5.3e-08 33.1 0.0 1e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55376855|ref|YP_134706.1| - 8.8e-06 26.2 0.0 1.9e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|55376855|ref|YP_134706.1| - 9.6e-05 22.3 0.0 0.0002 21.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|55376855|ref|YP_134706.1| - 0.0085 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase MatE PF01554.13 gi|55376856|ref|YP_134707.1| - 1.3e-62 210.1 33.7 1.3e-34 119.1 11.0 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|55376856|ref|YP_134707.1| - 9.7e-07 28.6 40.0 5.6e-05 22.9 11.2 4.7 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|55376856|ref|YP_134707.1| - 0.31 10.4 48.2 0.049 13.0 3.1 3.4 1 1 2 3 3 3 0 Polysaccharide biosynthesis protein Presenilin PF01080.12 gi|55376856|ref|YP_134707.1| - 1.9 7.1 10.4 0.95 8.2 1.9 2.3 2 0 0 2 2 2 0 Presenilin TetR_N PF00440.18 gi|55376857|ref|YP_134708.1| - 2.4e-13 49.5 0.7 4.1e-13 48.7 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|55376857|ref|YP_134708.1| - 2.2e-11 43.7 1.4 2.2e-11 43.7 1.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_C_6 PF13977.1 gi|55376858|ref|YP_134709.1| - 5.5e-21 74.7 3.0 7.2e-21 74.3 0.6 2.0 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|55376858|ref|YP_134709.1| - 2e-10 40.1 0.4 3.5e-10 39.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.6 gi|55376858|ref|YP_134709.1| - 0.0055 16.6 0.0 0.0095 15.8 0.0 1.3 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region Sigma70_r4 PF04545.11 gi|55376858|ref|YP_134709.1| - 0.051 12.9 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 PRC PF05239.11 gi|55376860|ref|YP_134711.1| - 3.8e-08 33.0 0.0 4.6e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Ribosomal_L21p PF00829.16 gi|55376861|ref|YP_134712.1| - 0.022 14.8 0.1 0.25 11.5 0.0 2.4 2 0 0 2 2 2 0 Ribosomal prokaryotic L21 protein YpM PF09144.5 gi|55376861|ref|YP_134712.1| - 0.037 13.9 0.1 0.45 10.4 0.1 2.2 2 0 0 2 2 2 0 Yersinia pseudotuberculosis mitogen HTH_20 PF12840.2 gi|55376862|ref|YP_134713.1| - 6.3e-14 51.5 0.0 1e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55376862|ref|YP_134713.1| - 1.1e-05 24.6 0.0 1.8e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55376862|ref|YP_134713.1| - 1.4e-05 24.6 0.0 2.4e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|55376862|ref|YP_134713.1| - 0.044 13.4 0.0 0.083 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|55376862|ref|YP_134713.1| - 0.14 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|55376862|ref|YP_134713.1| - 0.14 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Reticulon PF02453.12 gi|55376862|ref|YP_134713.1| - 0.15 11.6 0.3 0.26 10.9 0.2 1.3 1 0 0 1 1 1 0 Reticulon Abi PF02517.11 gi|55376863|ref|YP_134714.1| - 1.1e-12 47.9 18.2 3e-11 43.3 12.6 2.7 1 1 0 1 1 1 1 CAAX protease self-immunity DUF1212 PF06738.7 gi|55376863|ref|YP_134714.1| - 1.2 8.5 15.8 0.4 10.1 3.1 2.5 2 2 0 2 2 2 0 Protein of unknown function (DUF1212) ADH_N PF08240.7 gi|55376864|ref|YP_134715.1| - 1.5e-27 95.4 0.7 9e-27 92.9 0.5 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55376864|ref|YP_134715.1| - 3.1e-09 36.4 0.0 5.6e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|55376864|ref|YP_134715.1| - 3.8e-09 36.0 2.1 9.2e-09 34.8 1.4 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|55376864|ref|YP_134715.1| - 0.00073 20.0 0.0 0.0019 18.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain HI0933_like PF03486.9 gi|55376864|ref|YP_134715.1| - 0.059 11.8 0.2 0.19 10.1 0.1 1.7 2 0 0 2 2 2 0 HI0933-like protein Shikimate_DH PF01488.15 gi|55376864|ref|YP_134715.1| - 0.14 12.2 0.0 2.5 8.2 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase zf-DBF PF07535.7 gi|55376864|ref|YP_134715.1| - 0.88 9.3 3.3 1.6 8.4 2.3 1.4 1 0 0 1 1 1 0 DBF zinc finger cobW PF02492.14 gi|55376866|ref|YP_134717.1| - 2.4e-47 160.7 0.0 3.1e-47 160.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|55376866|ref|YP_134717.1| - 2.5e-24 84.8 0.0 4.4e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain AAA_16 PF13191.1 gi|55376866|ref|YP_134717.1| - 0.0014 18.6 0.1 0.006 16.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|55376866|ref|YP_134717.1| - 0.0022 16.9 0.0 0.0033 16.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|55376866|ref|YP_134717.1| - 0.0036 17.0 0.2 0.01 15.5 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|55376866|ref|YP_134717.1| - 0.0049 16.3 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|55376866|ref|YP_134717.1| - 0.0064 16.3 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|55376866|ref|YP_134717.1| - 0.0067 15.8 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.1 gi|55376866|ref|YP_134717.1| - 0.0086 16.2 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55376866|ref|YP_134717.1| - 0.013 14.6 0.0 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|55376866|ref|YP_134717.1| - 0.027 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|55376866|ref|YP_134717.1| - 0.028 14.3 0.2 0.06 13.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.1 gi|55376866|ref|YP_134717.1| - 0.035 14.9 0.2 0.065 14.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|55376866|ref|YP_134717.1| - 0.04 13.6 0.0 0.068 12.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|55376866|ref|YP_134717.1| - 0.05 13.9 0.0 0.12 12.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.1 gi|55376866|ref|YP_134717.1| - 0.069 13.4 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|55376866|ref|YP_134717.1| - 0.07 12.6 0.2 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|55376866|ref|YP_134717.1| - 0.078 12.0 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|55376866|ref|YP_134717.1| - 0.088 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|55376866|ref|YP_134717.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|55376866|ref|YP_134717.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|55376866|ref|YP_134717.1| - 0.13 11.0 0.8 2.1 7.0 0.1 2.7 3 0 0 3 3 3 0 ArgK protein Guanylate_kin PF00625.16 gi|55376866|ref|YP_134717.1| - 0.16 11.4 0.0 0.33 10.3 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase Creatininase PF02633.9 gi|55376867|ref|YP_134718.1| - 3.9e-70 235.6 4.2 4.5e-70 235.4 2.9 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Molybdopterin PF00384.17 gi|55376868|ref|YP_134719.1| - 2.3e-84 283.6 0.0 3e-84 283.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|55376868|ref|YP_134719.1| - 3.6e-34 116.8 0.0 6.5e-34 116.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|55376868|ref|YP_134719.1| - 1e-26 92.5 0.2 2.4e-26 91.3 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|55376868|ref|YP_134719.1| - 1.5e-14 52.9 0.6 1.5e-14 52.9 0.4 2.3 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|55376868|ref|YP_134719.1| - 5.6e-10 38.8 0.1 1.8e-09 37.2 0.0 2.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.2 gi|55376868|ref|YP_134719.1| - 2e-08 34.4 15.9 3.1e-08 33.8 6.3 3.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|55376868|ref|YP_134719.1| - 3.1e-08 33.3 8.8 3.1e-08 33.3 6.1 3.0 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|55376868|ref|YP_134719.1| - 1.3e-07 31.2 9.3 1.3e-07 31.2 6.4 3.2 4 1 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|55376868|ref|YP_134719.1| - 3.2e-07 29.6 20.7 0.00015 21.2 0.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|55376868|ref|YP_134719.1| - 1.8e-06 27.8 8.1 1.8e-06 27.8 5.6 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|55376868|ref|YP_134719.1| - 3.3e-06 26.7 12.3 2.1e-05 24.1 2.0 4.2 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|55376868|ref|YP_134719.1| - 3.7e-06 27.5 6.7 0.0038 17.9 0.2 4.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|55376868|ref|YP_134719.1| - 8.2e-05 22.7 20.3 0.00028 21.1 9.5 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|55376868|ref|YP_134719.1| - 0.00076 19.2 3.1 0.00076 19.2 2.1 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|55376868|ref|YP_134719.1| - 0.00081 19.9 11.9 0.026 15.1 0.6 4.3 5 0 0 5 5 3 2 4Fe-4S single cluster domain NIPSNAP PF07978.8 gi|55376868|ref|YP_134719.1| - 0.031 14.2 0.0 0.093 12.7 0.0 1.8 1 0 0 1 1 1 0 NIPSNAP CDC48_N PF02359.13 gi|55376868|ref|YP_134719.1| - 0.064 13.2 0.0 0.18 11.7 0.0 1.8 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_18 PF13746.1 gi|55376868|ref|YP_134719.1| - 0.47 10.9 23.1 0.088 13.2 2.5 3.2 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|55376868|ref|YP_134719.1| - 0.84 10.0 15.3 2.3 8.6 2.7 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Complex1_51K PF01512.12 gi|55376869|ref|YP_134720.1| - 1.4e-16 60.6 0.0 2.1e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|55376869|ref|YP_134720.1| - 3.3e-09 35.7 0.0 9.1e-09 34.3 0.0 1.8 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DrsE PF02635.10 gi|55376869|ref|YP_134720.1| - 0.03 14.3 0.0 0.061 13.3 0.0 1.5 1 0 0 1 1 1 0 DsrE/DsrF-like family Ribonuc_L-PSP PF01042.16 gi|55376871|ref|YP_134722.1| - 8.9e-38 128.7 0.0 1e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|55376871|ref|YP_134722.1| - 0.02 14.8 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease EamA PF00892.15 gi|55376872|ref|YP_134723.1| - 1.1e-10 41.6 16.8 1.3e-10 41.4 11.7 1.1 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|55376872|ref|YP_134723.1| - 0.27 10.8 15.6 0.45 10.1 10.8 1.5 1 1 0 1 1 1 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|55376872|ref|YP_134723.1| - 2.2 8.5 20.2 6.5 6.9 14.0 1.8 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF1129 PF06570.6 gi|55376872|ref|YP_134723.1| - 5.1 6.3 7.7 6.8 5.9 0.7 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1129) TrkA_N PF02254.13 gi|55376873|ref|YP_134724.1| - 6.5e-27 93.8 1.7 1e-26 93.1 1.1 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|55376873|ref|YP_134724.1| - 1.3e-13 50.4 7.5 1.3e-13 50.4 5.2 3.0 4 1 0 4 4 4 1 Ion channel ADH_zinc_N PF00107.21 gi|55376873|ref|YP_134724.1| - 0.0074 15.8 0.3 0.059 12.9 0.1 2.3 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Ion_trans PF00520.26 gi|55376873|ref|YP_134724.1| - 0.047 12.9 0.6 0.09 12.0 0.5 1.4 1 0 0 1 1 1 0 Ion transport protein NmrA PF05368.8 gi|55376873|ref|YP_134724.1| - 0.11 11.7 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family NAD_binding_7 PF13241.1 gi|55376873|ref|YP_134724.1| - 0.55 10.5 3.1 0.18 12.0 0.2 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding BCCT PF02028.12 gi|55376874|ref|YP_134725.1| - 2.7e-130 434.8 44.9 3.4e-130 434.5 31.1 1.1 1 0 0 1 1 1 1 BCCT family transporter Pox_A9 PF04835.7 gi|55376874|ref|YP_134725.1| - 0.0087 15.9 1.2 0.086 12.7 0.0 2.6 2 0 0 2 2 2 1 A9 protein conserved region GATase PF00117.23 gi|55376875|ref|YP_134726.1| - 2.9e-47 160.6 0.0 3.2e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|55376875|ref|YP_134726.1| - 1e-07 31.6 0.4 2.4e-07 30.4 0.3 1.5 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.13 gi|55376875|ref|YP_134726.1| - 0.14 11.2 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Chorismate_bind PF00425.13 gi|55376876|ref|YP_134727.1| - 1.1e-97 326.3 0.0 3.9e-97 324.6 0.0 1.9 3 0 0 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|55376876|ref|YP_134727.1| - 9.4e-16 58.0 0.0 2.7e-15 56.6 0.0 1.8 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region THF_DHG_CYH_C PF02882.14 gi|55376877|ref|YP_134728.1| - 1.1e-65 219.5 1.8 1.1e-65 219.5 1.2 1.4 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|55376877|ref|YP_134728.1| - 7.3e-37 125.9 0.0 1.1e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Zn-ribbon_8 PF09723.5 gi|55376878|ref|YP_134729.1| - 0.0081 16.0 0.9 0.042 13.7 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DUF3268 PF11672.3 gi|55376878|ref|YP_134729.1| - 0.02 14.9 1.7 0.022 14.8 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zf-ribbon_3 PF13248.1 gi|55376878|ref|YP_134729.1| - 0.074 12.2 0.1 0.074 12.2 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|55376878|ref|YP_134729.1| - 0.087 12.1 0.9 0.4 10.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|55376878|ref|YP_134729.1| - 0.14 12.1 3.7 13 5.8 2.6 2.7 1 1 0 1 1 1 0 zinc-finger Cytochrome_C7 PF14522.1 gi|55376878|ref|YP_134729.1| - 0.17 11.5 1.3 0.26 10.9 0.9 1.3 1 0 0 1 1 1 0 Cytochrome c7 A2L_zn_ribbon PF08792.5 gi|55376878|ref|YP_134729.1| - 0.32 10.4 0.1 0.32 10.4 0.1 2.2 3 0 0 3 3 3 0 A2L zinc ribbon domain Hexapep PF00132.19 gi|55376879|ref|YP_134730.1| - 2.3e-11 42.6 7.6 6.7e-07 28.5 2.1 3.3 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|55376879|ref|YP_134730.1| - 0.00023 21.3 0.0 0.0004 20.5 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|55376879|ref|YP_134730.1| - 0.00056 19.4 1.3 0.00056 19.4 0.9 2.7 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SDF PF00375.13 gi|55376880|ref|YP_134731.1| - 8.2e-114 380.3 37.9 9.3e-114 380.2 26.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family EMP70 PF02990.11 gi|55376880|ref|YP_134731.1| - 0.24 9.8 9.0 0.35 9.2 2.3 2.3 2 0 0 2 2 2 0 Endomembrane protein 70 EamA PF00892.15 gi|55376881|ref|YP_134732.1| - 5.4e-30 104.0 27.0 1.6e-15 57.2 9.8 2.4 2 1 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.7 gi|55376881|ref|YP_134732.1| - 0.0054 16.3 1.3 0.0054 16.3 0.9 4.1 2 2 3 5 5 5 1 Positive regulator of sigma(E), RseC/MucC EmrE PF13536.1 gi|55376881|ref|YP_134732.1| - 0.0092 16.1 5.9 0.0092 16.1 4.1 3.8 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|55376881|ref|YP_134732.1| - 1.5 8.4 21.5 0.33 10.5 7.1 2.4 2 0 0 2 2 2 0 Triose-phosphate Transporter family HAD PF12710.2 gi|55376882|ref|YP_134733.1| - 3.6e-11 43.5 0.0 5.1e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|55376882|ref|YP_134733.1| - 7e-08 33.1 0.2 0.00025 21.5 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|55376882|ref|YP_134733.1| - 2.2e-06 28.0 0.0 3.1e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|55376882|ref|YP_134733.1| - 0.0068 15.6 0.0 0.11 11.5 0.0 2.1 2 0 0 2 2 2 1 Putative Phosphatase UMPH-1 PF05822.7 gi|55376882|ref|YP_134733.1| - 0.046 13.0 0.0 0.063 12.5 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) CoA_binding PF02629.14 gi|55376882|ref|YP_134733.1| - 0.14 12.6 0.1 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain Ribonuc_L-PSP PF01042.16 gi|55376883|ref|YP_134734.1| - 3.7e-40 136.4 0.0 4.1e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP adh_short_C2 PF13561.1 gi|55376884|ref|YP_134735.1| - 3.5e-34 118.6 0.0 4.3e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|55376884|ref|YP_134735.1| - 1.5e-32 112.8 0.5 1.9e-32 112.4 0.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|55376884|ref|YP_134735.1| - 2.1e-12 47.1 0.7 3.1e-12 46.5 0.5 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|55376884|ref|YP_134735.1| - 2.9e-05 23.6 0.9 8.8e-05 22.0 0.6 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|55376884|ref|YP_134735.1| - 9.5e-05 22.4 1.2 0.00016 21.7 0.7 1.5 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|55376884|ref|YP_134735.1| - 0.021 14.5 0.5 0.039 13.5 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|55376884|ref|YP_134735.1| - 0.027 13.4 0.1 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|55376884|ref|YP_134735.1| - 0.027 14.5 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase RmlD_sub_bind PF04321.12 gi|55376884|ref|YP_134735.1| - 0.028 13.3 0.0 0.055 12.3 0.0 1.5 1 0 0 1 1 1 0 RmlD substrate binding domain F420_oxidored PF03807.12 gi|55376884|ref|YP_134735.1| - 0.031 14.6 0.2 0.073 13.5 0.0 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Polysacc_synt_2 PF02719.10 gi|55376884|ref|YP_134735.1| - 0.035 12.9 0.0 0.064 12.1 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein MR_MLE_C PF13378.1 gi|55376885|ref|YP_134736.1| - 3.5e-21 75.2 0.1 1.5e-18 66.7 0.0 2.4 2 0 0 2 2 2 2 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|55376885|ref|YP_134736.1| - 2.2e-16 59.8 0.0 5.8e-16 58.5 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|55376885|ref|YP_134736.1| - 2.8e-15 56.6 0.8 6.9e-15 55.3 0.4 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF187 PF02638.10 gi|55376886|ref|YP_134737.1| - 0.13 11.1 0.0 0.23 10.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 BPD_transp_1 PF00528.17 gi|55376887|ref|YP_134738.1| - 2.8e-16 59.5 17.5 2.8e-16 59.5 12.1 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|55376888|ref|YP_134739.1| - 2.1e-20 73.0 15.1 2.1e-20 73.0 10.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|55376889|ref|YP_134740.1| - 2e-40 139.4 0.1 2.9e-40 138.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|55376889|ref|YP_134740.1| - 2.7e-35 122.4 0.0 4e-35 121.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|55376889|ref|YP_134740.1| - 0.00011 21.9 0.0 0.00023 20.8 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|55376889|ref|YP_134740.1| - 0.00014 21.3 0.0 0.35 10.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Creatininase PF02633.9 gi|55376890|ref|YP_134741.1| - 2.9e-64 216.4 0.3 3.3e-64 216.2 0.2 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.22 gi|55376891|ref|YP_134742.1| - 3.7e-32 111.4 0.0 6.6e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|55376891|ref|YP_134742.1| - 8.3e-11 41.7 0.1 2.6e-10 40.1 0.0 1.9 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.1 gi|55376891|ref|YP_134742.1| - 1.4e-08 35.0 0.0 0.00044 20.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|55376891|ref|YP_134742.1| - 1.6e-07 31.3 0.1 4.8e-06 26.5 0.0 2.9 3 0 0 3 3 2 1 TOBE domain SMC_N PF02463.14 gi|55376891|ref|YP_134742.1| - 5.1e-05 22.6 1.2 0.00033 19.9 0.8 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55376891|ref|YP_134742.1| - 0.00037 20.5 0.1 0.00085 19.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|55376891|ref|YP_134742.1| - 0.0013 18.8 0.4 0.0033 17.5 0.3 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|55376891|ref|YP_134742.1| - 0.0013 17.9 0.1 0.0029 16.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|55376891|ref|YP_134742.1| - 0.0015 17.6 0.0 0.01 14.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|55376891|ref|YP_134742.1| - 0.0063 15.2 0.0 0.013 14.2 0.0 1.5 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|55376891|ref|YP_134742.1| - 0.0072 16.2 0.9 0.016 15.0 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|55376891|ref|YP_134742.1| - 0.011 16.5 0.6 0.027 15.2 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55376891|ref|YP_134742.1| - 0.013 14.9 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|55376891|ref|YP_134742.1| - 0.016 15.3 0.8 0.1 12.8 0.5 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|55376891|ref|YP_134742.1| - 0.02 14.6 0.6 0.13 11.9 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|55376891|ref|YP_134742.1| - 0.022 14.7 0.4 0.15 12.0 0.1 2.4 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|55376891|ref|YP_134742.1| - 0.022 15.0 0.0 0.17 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|55376891|ref|YP_134742.1| - 0.024 14.0 0.0 0.25 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|55376891|ref|YP_134742.1| - 0.026 14.0 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|55376891|ref|YP_134742.1| - 0.029 14.8 0.3 0.14 12.6 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein MobB PF03205.9 gi|55376891|ref|YP_134742.1| - 0.055 13.1 0.2 0.18 11.5 0.1 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|55376891|ref|YP_134742.1| - 0.066 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|55376891|ref|YP_134742.1| - 0.074 12.7 0.1 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|55376891|ref|YP_134742.1| - 0.092 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|55376891|ref|YP_134742.1| - 0.1 12.5 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|55376891|ref|YP_134742.1| - 0.12 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|55376891|ref|YP_134742.1| - 0.12 12.7 0.1 0.2 11.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|55376891|ref|YP_134742.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.7 gi|55376891|ref|YP_134742.1| - 0.13 11.2 0.3 0.34 9.9 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_19 PF13245.1 gi|55376891|ref|YP_134742.1| - 0.16 11.7 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain IclR PF01614.13 gi|55376892|ref|YP_134743.1| - 4.2e-32 110.5 0.0 5e-31 107.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55376892|ref|YP_134743.1| - 1.1e-09 37.7 0.0 5.8e-09 35.4 0.0 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|55376892|ref|YP_134743.1| - 5.4e-05 22.7 0.2 0.0003 20.4 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|55376892|ref|YP_134743.1| - 0.00027 20.5 0.1 0.0016 18.0 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|55376892|ref|YP_134743.1| - 0.00067 19.4 0.0 0.0022 17.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|55376892|ref|YP_134743.1| - 0.0008 19.0 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|55376892|ref|YP_134743.1| - 0.002 17.7 0.0 0.007 16.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Bombolitin PF08096.6 gi|55376892|ref|YP_134743.1| - 0.032 14.2 1.4 0.69 10.1 0.1 2.4 2 0 0 2 2 2 0 Bombolitin family Diacid_rec PF05651.8 gi|55376892|ref|YP_134743.1| - 0.038 13.4 0.0 0.062 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative sugar diacid recognition Rrf2 PF02082.15 gi|55376892|ref|YP_134743.1| - 0.046 13.8 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_34 PF13601.1 gi|55376892|ref|YP_134743.1| - 0.051 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF742 PF05331.6 gi|55376892|ref|YP_134743.1| - 0.067 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_24 PF13412.1 gi|55376892|ref|YP_134743.1| - 0.079 12.3 0.0 0.22 10.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding IclR PF01614.13 gi|55376893|ref|YP_134744.1| - 6.2e-30 103.5 0.1 2.1e-29 101.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|55376893|ref|YP_134744.1| - 2.1e-07 30.4 0.0 5.5e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|55376893|ref|YP_134744.1| - 0.00019 21.1 0.0 0.00065 19.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|55376893|ref|YP_134744.1| - 0.00023 20.7 0.0 0.00046 19.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|55376893|ref|YP_134744.1| - 0.002 17.8 0.0 0.027 14.1 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|55376893|ref|YP_134744.1| - 0.002 17.7 0.1 0.01 15.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|55376893|ref|YP_134744.1| - 0.0022 18.2 0.1 0.047 14.0 0.1 2.8 3 0 0 3 3 3 1 Winged helix DNA-binding domain MarR PF01047.17 gi|55376893|ref|YP_134744.1| - 0.018 14.7 0.0 0.04 13.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.7 gi|55376893|ref|YP_134744.1| - 0.02 14.4 0.2 0.08 12.4 0.1 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|55376893|ref|YP_134744.1| - 0.044 13.1 0.0 0.081 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SBP_bac_8 PF13416.1 gi|55376895|ref|YP_134746.1| - 1.1e-18 68.0 2.9 1.6e-18 67.4 2.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|55376895|ref|YP_134746.1| - 5.6e-07 29.1 2.8 1.6e-06 27.6 1.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|55376895|ref|YP_134746.1| - 0.00061 18.9 0.6 0.00061 18.9 0.5 2.1 2 0 0 2 2 2 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SBP_bac_11 PF13531.1 gi|55376895|ref|YP_134746.1| - 0.0019 17.8 0.0 0.019 14.6 0.0 2.5 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|55376895|ref|YP_134746.1| - 0.042 13.8 8.1 0.094 12.7 5.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Orbi_VP6 PF01516.11 gi|55376895|ref|YP_134746.1| - 4.9 6.1 5.5 7.1 5.5 3.8 1.1 1 0 0 1 1 1 0 Orbivirus helicase VP6 ABC_tran PF00005.22 gi|55376896|ref|YP_134747.1| - 3.8e-33 114.6 0.0 6.9e-33 113.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|55376896|ref|YP_134747.1| - 2.7e-24 84.9 0.5 1.3e-23 82.8 0.1 2.4 3 0 0 3 3 2 1 TOBE domain AAA_21 PF13304.1 gi|55376896|ref|YP_134747.1| - 1e-06 28.9 0.1 0.0076 16.2 0.0 2.5 2 1 0 3 3 3 2 AAA domain Rad17 PF03215.10 gi|55376896|ref|YP_134747.1| - 0.0014 17.3 0.0 0.0021 16.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|55376896|ref|YP_134747.1| - 0.0015 17.8 0.0 0.08 12.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|55376896|ref|YP_134747.1| - 0.0023 17.9 0.2 0.004 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|55376896|ref|YP_134747.1| - 0.011 15.2 0.0 0.013 14.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|55376896|ref|YP_134747.1| - 0.011 15.8 0.0 0.027 14.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|55376896|ref|YP_134747.1| - 0.012 14.8 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|55376896|ref|YP_134747.1| - 0.019 15.1 0.5 0.048 13.8 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|55376896|ref|YP_134747.1| - 0.022 14.1 0.3 0.091 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|55376896|ref|YP_134747.1| - 0.026 14.0 0.1 0.057 12.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|55376896|ref|YP_134747.1| - 0.029 14.0 0.0 0.074 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|55376896|ref|YP_134747.1| - 0.032 14.4 0.3 0.51 10.5 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|55376896|ref|YP_134747.1| - 0.039 14.2 0.0 0.49 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|55376896|ref|YP_134747.1| - 0.055 12.1 0.0 0.074 11.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_17 PF13207.1 gi|55376896|ref|YP_134747.1| - 0.074 13.8 0.7 0.37 11.6 0.5 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|55376896|ref|YP_134747.1| - 0.078 12.1 0.0 1.6 7.8 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|55376896|ref|YP_134747.1| - 0.11 11.9 0.1 0.28 10.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|55376896|ref|YP_134747.1| - 0.11 12.3 0.5 0.57 10.0 0.3 2.1 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|55376896|ref|YP_134747.1| - 0.35 10.8 1.7 2.1 8.3 0.2 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit BPD_transp_1 PF00528.17 gi|55376898|ref|YP_134749.1| - 1.4e-14 54.0 7.0 1.7e-14 53.7 4.8 1.0 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF4149 PF13664.1 gi|55376898|ref|YP_134749.1| - 0.057 13.4 1.6 0.11 12.5 1.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) PalH PF08733.5 gi|55376898|ref|YP_134749.1| - 0.16 10.7 0.1 0.16 10.7 0.1 1.8 2 1 0 2 2 2 0 PalH/RIM21 BPD_transp_1 PF00528.17 gi|55376899|ref|YP_134750.1| - 2.6e-17 62.9 19.9 2.6e-17 62.9 13.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ADH_N PF08240.7 gi|55376900|ref|YP_134751.1| - 7.4e-28 96.4 0.9 1.4e-27 95.6 0.3 1.6 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|55376900|ref|YP_134751.1| - 1.4e-27 95.8 0.1 2.1e-27 95.2 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|55376900|ref|YP_134751.1| - 0.0038 16.4 0.2 0.006 15.7 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|55376900|ref|YP_134751.1| - 0.0045 16.5 0.3 0.0077 15.8 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ELFV_dehydrog PF00208.16 gi|55376900|ref|YP_134751.1| - 0.014 14.9 0.4 0.024 14.2 0.3 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Methyltransf_11 PF08241.7 gi|55376900|ref|YP_134751.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|55376900|ref|YP_134751.1| - 0.12 12.9 0.1 0.41 11.2 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase domain Aldedh PF00171.17 gi|55376901|ref|YP_134752.1| - 1.8e-163 544.2 0.0 2.2e-163 543.9 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DFP PF04127.10 gi|55376901|ref|YP_134752.1| - 0.099 12.2 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein MFS_1 PF07690.11 gi|55376902|ref|YP_134753.1| - 3.1e-45 154.4 69.2 3.1e-37 128.0 30.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|55376902|ref|YP_134753.1| - 0.0015 18.3 2.5 0.88 9.4 0.0 3.7 3 0 0 3 3 3 1 MFS_1 like family EutH PF04346.7 gi|55376902|ref|YP_134753.1| - 0.012 14.5 9.4 0.072 12.0 0.8 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation protein, EutH Sugar_tr PF00083.19 gi|55376902|ref|YP_134753.1| - 0.047 12.2 33.1 0.021 13.4 8.9 2.3 2 0 0 2 2 2 0 Sugar (and other) transporter CN_hydrolase PF00795.17 gi|55376903|ref|YP_134754.1| - 6.4e-33 113.6 0.0 1e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase HTH_10 PF04967.7 gi|55376905|ref|YP_134756.1| - 2e-15 56.0 0.0 3.3e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|55376905|ref|YP_134756.1| - 0.0063 15.8 0.0 0.013 14.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|55376905|ref|YP_134756.1| - 0.057 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|55376905|ref|YP_134756.1| - 0.072 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TctA PF01970.11 gi|55376906|ref|YP_134757.1| - 0.0027 16.2 1.3 0.0031 15.9 0.9 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DHFR_1 PF00186.14 gi|55376907|ref|YP_134758.1| - 3e-51 173.1 0.0 3.7e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase GCV_T PF01571.16 gi|55376909|ref|YP_134760.1| - 4.1e-41 140.6 0.0 5.9e-41 140.1 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|55376909|ref|YP_134760.1| - 2.6e-09 36.9 0.0 6.6e-09 35.6 0.0 1.7 1 1 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain MTHFR PF02219.12 gi|55376910|ref|YP_134761.1| - 1.1e-13 50.9 0.0 2.8e-13 49.5 0.0 1.6 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase AstE_AspA PF04952.9 gi|55376912|ref|YP_134763.1| - 1.8e-42 145.2 0.1 2.3e-42 144.9 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|55376912|ref|YP_134763.1| - 0.037 13.6 0.0 0.053 13.1 0.0 1.4 1 1 0 1 1 1 0 Zinc carboxypeptidase Amidohydro_2 PF04909.9 gi|55376912|ref|YP_134763.1| - 0.055 13.0 0.1 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 Amidohydrolase DAO PF01266.19 gi|55376913|ref|YP_134764.1| - 2.7e-70 237.0 0.2 4.9e-70 236.2 0.1 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|55376913|ref|YP_134764.1| - 8.3e-66 221.3 0.0 1.4e-65 220.5 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|55376913|ref|YP_134764.1| - 1.3e-15 57.1 0.0 3.6e-15 55.7 0.0 1.8 2 0 0 2 2 1 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|55376913|ref|YP_134764.1| - 1.3e-07 31.9 0.2 7.8e-06 26.0 0.1 2.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SoxG PF04268.7 gi|55376913|ref|YP_134764.1| - 3.5e-07 30.1 0.0 6.6e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family FAD_binding_2 PF00890.19 gi|55376913|ref|YP_134764.1| - 1.4e-06 27.3 0.1 3.3e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|55376913|ref|YP_134764.1| - 3.7e-05 23.6 0.0 0.00012 22.0 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|55376913|ref|YP_134764.1| - 0.00019 21.7 0.5 0.0057 17.0 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|55376913|ref|YP_134764.1| - 0.0019 17.9 0.2 0.26 11.0 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding ThiF PF00899.16 gi|55376913|ref|YP_134764.1| - 0.004 16.9 0.1 0.01 15.6 0.1 1.7 1 0 0 1 1 1 1 ThiF family GMC_oxred_N PF00732.14 gi|55376913|ref|YP_134764.1| - 0.0082 15.3 0.2 0.021 13.9 0.0 1.7 2 0 0 2 2 2 1 GMC oxidoreductase TrkA_N PF02254.13 gi|55376913|ref|YP_134764.1| - 0.0089 16.0 0.0 0.027 14.4 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain HI0933_like PF03486.9 gi|55376913|ref|YP_134764.1| - 0.012 14.1 0.2 0.13 10.7 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein Lycopene_cycl PF05834.7 gi|55376913|ref|YP_134764.1| - 0.014 14.3 1.5 0.05 12.5 0.1 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.11 gi|55376913|ref|YP_134764.1| - 0.019 14.3 0.1 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|55376913|ref|YP_134764.1| - 0.04 13.8 0.1 0.16 11.8 0.0 2.0 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|55376913|ref|YP_134764.1| - 0.041 12.9 1.3 0.12 11.4 0.4 2.1 2 1 0 2 2 2 0 FAD dependent oxidoreductase Thi4 PF01946.12 gi|55376913|ref|YP_134764.1| - 0.12 11.4 0.5 1.6 7.7 0.0 2.3 2 0 0 2 2 2 0 Thi4 family Ring_hydroxyl_A PF00848.14 gi|55376914|ref|YP_134765.1| - 1.5e-27 96.6 8.4 2.3e-27 96.0 5.8 1.3 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.21 gi|55376914|ref|YP_134765.1| - 9.9e-19 66.7 0.0 1.9e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|55376914|ref|YP_134765.1| - 0.022 14.4 0.0 0.054 13.2 0.0 1.6 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain RAMP PF04901.8 gi|55376914|ref|YP_134765.1| - 2.6 7.8 4.4 5 6.9 0.7 2.6 2 1 1 3 3 3 0 Receptor activity modifying family GCV_T PF01571.16 gi|55376916|ref|YP_134767.1| - 1.2e-59 201.2 0.0 1.9e-59 200.6 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.19 gi|55376916|ref|YP_134767.1| - 5.7e-53 180.0 1.5 1.2e-52 179.0 1.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.6 gi|55376916|ref|YP_134767.1| - 2.6e-19 69.0 0.0 1.3e-18 66.7 0.0 2.2 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|55376916|ref|YP_134767.1| - 4.6e-07 30.1 0.1 4.3e-06 26.9 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|55376916|ref|YP_134767.1| - 9.5e-06 25.5 0.1 4e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain SoxG PF04268.7 gi|55376916|ref|YP_134767.1| - 1.3e-05 25.0 0.0 0.0004 20.2 0.0 2.3 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family FAD_binding_2 PF00890.19 gi|55376916|ref|YP_134767.1| - 3.6e-05 22.7 0.7 0.00015 20.7 0.4 2.0 1 1 1 2 2 2 1 FAD binding domain ApbA PF02558.11 gi|55376916|ref|YP_134767.1| - 0.00045 19.6 0.0 0.00088 18.7 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|55376916|ref|YP_134767.1| - 0.00052 19.8 0.2 0.001 18.9 0.1 1.5 1 0 0 1 1 1 1 ThiF family Pyr_redox_2 PF07992.9 gi|55376916|ref|YP_134767.1| - 0.00055 19.8 0.2 0.011 15.6 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|55376916|ref|YP_134767.1| - 0.0017 18.4 0.0 0.0035 17.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GMC_oxred_N PF00732.14 gi|55376916|ref|YP_134767.1| - 0.0022 17.2 0.0 0.0036 16.4 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase Pyr_redox PF00070.22 gi|55376916|ref|YP_134767.1| - 0.0023 18.2 1.4 0.0044 17.3 0.2 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|55376916|ref|YP_134767.1| - 0.0075 15.2 0.3 0.012 14.5 0.2 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein TrkA_N PF02254.13 gi|55376916|ref|YP_134767.1| - 0.014 15.3 0.1 0.03 14.3 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_9 PF13454.1 gi|55376916|ref|YP_134767.1| - 0.037 13.8 0.1 0.87 9.3 0.0 2.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|55376916|ref|YP_134767.1| - 0.11 10.9 0.2 1.7 6.9 0.2 2.1 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.12 gi|55376916|ref|YP_134767.1| - 0.12 11.4 0.1 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Thi4 family PALP PF00291.20 gi|55376917|ref|YP_134768.1| - 1.3e-78 264.3 4.7 1.8e-78 263.8 3.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|55376917|ref|YP_134768.1| - 1.5e-08 33.9 0.3 1.5e-08 33.9 0.2 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|55376917|ref|YP_134768.1| - 9.2e-06 25.9 0.1 2.7e-05 24.4 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|55376917|ref|YP_134768.1| - 0.011 15.4 0.0 0.028 14.1 0.0 1.8 1 0 0 1 1 1 0 ACT domain Usp PF00582.21 gi|55376918|ref|YP_134769.1| - 2.2e-29 102.4 0.1 2.6e-29 102.2 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|55376918|ref|YP_134769.1| - 0.0006 19.1 0.5 0.00078 18.7 0.4 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel BCCT PF02028.12 gi|55376920|ref|YP_134771.1| - 3.5e-179 596.0 47.6 4.1e-179 595.8 33.0 1.0 1 0 0 1 1 1 1 BCCT family transporter DUF21 PF01595.15 gi|55376921|ref|YP_134772.1| - 0.21 10.8 11.3 0.089 12.0 6.1 1.5 1 1 0 2 2 2 0 Domain of unknown function DUF21 OrfB_Zn_ribbon PF07282.6 gi|55376922|ref|YP_134773.1| - 0.0076 15.8 7.5 0.23 11.1 0.1 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|55376922|ref|YP_134773.1| - 0.0095 15.7 7.1 0.16 11.8 0.4 2.6 2 1 0 2 2 2 1 zinc-ribbons HypA PF01155.14 gi|55376922|ref|YP_134773.1| - 0.017 14.8 8.8 1.8 8.2 3.3 2.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|55376922|ref|YP_134773.1| - 0.035 13.6 8.7 8.4 6.0 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|55376922|ref|YP_134773.1| - 0.038 13.5 14.1 0.45 10.0 0.2 3.8 3 1 0 3 3 3 0 InsA N-terminal domain zf-piccolo PF05715.8 gi|55376922|ref|YP_134773.1| - 0.069 13.1 0.1 0.069 13.1 0.1 2.3 2 1 0 2 2 2 0 Piccolo Zn-finger Zn-ribbon_8 PF09723.5 gi|55376922|ref|YP_134773.1| - 0.08 12.9 11.9 4.7 7.2 3.7 3.9 3 1 1 4 4 4 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|55376922|ref|YP_134773.1| - 0.11 12.8 11.3 0.36 11.1 1.0 2.9 1 1 2 3 3 3 0 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|55376922|ref|YP_134773.1| - 0.17 11.6 9.3 13 5.6 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain GCC2_GCC3 PF07699.8 gi|55376922|ref|YP_134773.1| - 0.24 11.0 3.6 0.27 10.8 0.7 2.2 2 0 0 2 2 2 0 GCC2 and GCC3 DZR PF12773.2 gi|55376922|ref|YP_134773.1| - 0.35 10.7 10.0 0.77 9.6 1.1 2.7 1 1 1 2 2 2 0 Double zinc ribbon TerY-C PF15616.1 gi|55376922|ref|YP_134773.1| - 0.38 10.6 5.7 2 8.3 1.9 2.7 1 1 1 2 2 2 0 TerY-C metal binding domain IBR PF01485.16 gi|55376922|ref|YP_134773.1| - 0.46 10.3 10.7 3.8 7.4 1.5 2.4 1 1 1 2 2 2 0 IBR domain zf-CHY PF05495.7 gi|55376922|ref|YP_134773.1| - 0.48 10.6 7.7 5.6 7.1 4.9 2.2 1 1 1 2 2 2 0 CHY zinc finger DnaJ_CXXCXGXG PF00684.14 gi|55376922|ref|YP_134773.1| - 0.75 9.8 5.6 13 5.9 4.1 2.3 1 1 0 1 1 1 0 DnaJ central domain TF_Zn_Ribbon PF08271.7 gi|55376922|ref|YP_134773.1| - 0.8 9.0 8.9 3.3 7.1 1.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|55376922|ref|YP_134773.1| - 0.9 9.4 17.4 2.9 7.7 3.2 3.1 1 1 2 3 3 3 0 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|55376922|ref|YP_134773.1| - 1.5 8.3 8.1 4.1 6.9 0.0 3.4 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger YdjO PF14169.1 gi|55376922|ref|YP_134773.1| - 1.6 8.2 9.3 0.31 10.5 0.2 2.9 1 1 2 3 3 3 0 Cold-inducible protein YdjO zf-DNA_Pol PF08996.5 gi|55376922|ref|YP_134773.1| - 1.8 7.8 4.5 1.2 8.4 0.1 2.4 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger Mu-like_Com PF10122.4 gi|55376922|ref|YP_134773.1| - 2 7.5 5.9 11 5.1 0.2 3.0 3 0 0 3 3 3 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|55376922|ref|YP_134773.1| - 2.9 7.6 14.1 23 4.6 1.7 4.1 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) zf-C3HC4_4 PF15227.1 gi|55376922|ref|YP_134773.1| - 3 7.7 6.5 9.4 6.2 0.8 2.9 3 0 0 3 3 3 0 zinc finger of C3HC4-type, RING Elf1 PF05129.8 gi|55376922|ref|YP_134773.1| - 3.2 7.5 8.4 8.3 6.1 0.6 2.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DNA_ligase_ZBD PF03119.11 gi|55376922|ref|YP_134773.1| - 4.5 7.0 9.3 3.7 7.3 0.2 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Opy2 PF09463.5 gi|55376922|ref|YP_134773.1| - 7.5 6.7 13.1 18 5.5 0.5 4.0 4 0 0 4 4 4 0 Opy2 protein zf-TFIIB PF13453.1 gi|55376922|ref|YP_134773.1| - 7.6 5.8 16.6 3.3 6.9 2.9 3.1 2 2 1 3 3 3 0 Transcription factor zinc-finger Sgf11 PF08209.6 gi|55376922|ref|YP_134773.1| - 8 5.8 8.4 12 5.3 0.0 3.5 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) FixQ PF05545.6 gi|55376923|ref|YP_134774.1| - 0.1 12.2 0.4 0.14 11.8 0.3 1.2 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ PMP1_2 PF08114.6 gi|55376923|ref|YP_134774.1| - 0.27 10.7 1.5 0.36 10.3 1.1 1.2 1 0 0 1 1 1 0 ATPase proteolipid family Pterin_bind PF00809.17 gi|55376924|ref|YP_134775.1| - 3.5e-72 242.1 0.2 7.3e-72 241.1 0.1 1.6 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|55376924|ref|YP_134775.1| - 1.3e-15 57.9 0.1 2.5e-15 57.0 0.1 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|55376924|ref|YP_134775.1| - 2e-06 27.7 0.0 6e-06 26.2 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain FTHFS PF01268.14 gi|55376925|ref|YP_134776.1| - 9.8e-241 799.5 0.0 1.1e-240 799.3 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase CTX_RstB PF07459.6 gi|55376925|ref|YP_134776.1| - 0.093 12.5 0.0 0.29 10.9 0.0 1.8 2 0 0 2 2 2 0 CTX phage RstB protein FTCD_C PF04961.7 gi|55376926|ref|YP_134777.1| - 2e-44 151.2 9.3 2.5e-44 150.9 6.5 1.1 1 0 0 1 1 1 1 Formiminotransferase-cyclodeaminase FBPase PF00316.15 gi|55376926|ref|YP_134777.1| - 0.083 11.7 1.5 0.13 11.0 1.1 1.4 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase Rifin_STEVOR PF02009.11 gi|55376926|ref|YP_134777.1| - 0.17 11.5 1.3 0.18 11.4 0.9 1.2 1 0 0 1 1 1 0 Rifin/stevor family GTP_cyclohydroI PF01227.17 gi|55376927|ref|YP_134778.1| - 1.6e-50 170.8 0.0 2.1e-50 170.5 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I RNA_pol_Rpb2_4 PF04566.8 gi|55376929|ref|YP_134780.1| - 0.13 12.0 0.0 0.43 10.4 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 zf-C2H2_3 PF13878.1 gi|55376930|ref|YP_134781.1| - 0.031 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO DUF4358 PF14270.1 gi|55376930|ref|YP_134781.1| - 0.051 13.4 0.0 0.073 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4358) IncA PF04156.9 gi|55376931|ref|YP_134782.1| - 1.4e-08 34.5 61.8 0.0012 18.4 6.0 4.2 2 2 2 4 4 4 3 IncA protein EzrA PF06160.7 gi|55376931|ref|YP_134782.1| - 7.4e-07 27.7 30.2 0.00054 18.2 9.4 2.2 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA Seryl_tRNA_N PF02403.17 gi|55376931|ref|YP_134782.1| - 1e-06 28.7 44.2 0.00065 19.6 6.1 5.9 2 2 4 6 6 6 3 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.1 gi|55376931|ref|YP_134782.1| - 1.3e-05 23.9 31.0 0.0004 18.9 19.1 2.7 1 1 1 2 2 2 2 AAA domain DUF342 PF03961.8 gi|55376931|ref|YP_134782.1| - 5.4e-05 21.7 25.1 0.0012 17.3 2.5 3.7 1 1 1 3 3 3 2 Protein of unknown function (DUF342) Reo_sigmaC PF04582.7 gi|55376931|ref|YP_134782.1| - 5.8e-05 22.4 14.7 0.038 13.1 4.1 3.4 1 1 1 3 3 3 2 Reovirus sigma C capsid protein COG2 PF06148.6 gi|55376931|ref|YP_134782.1| - 0.00012 21.9 30.6 0.43 10.4 0.4 5.7 2 2 3 5 5 5 3 COG (conserved oligomeric Golgi) complex component, COG2 FliD_N PF02465.13 gi|55376931|ref|YP_134782.1| - 0.00066 19.9 7.2 1.8 8.9 0.4 4.9 2 2 2 5 5 4 1 Flagellar hook-associated protein 2 N-terminus Myosin_tail_1 PF01576.14 gi|55376931|ref|YP_134782.1| - 0.00074 17.3 49.3 0.0012 16.7 34.2 1.2 1 0 0 1 1 1 1 Myosin tail GAS PF13851.1 gi|55376931|ref|YP_134782.1| - 0.00075 18.7 37.1 0.072 12.2 8.5 3.5 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding MAD PF05557.8 gi|55376931|ref|YP_134782.1| - 0.00088 17.5 47.9 0.14 10.1 4.9 3.6 2 2 1 3 3 3 2 Mitotic checkpoint protein Fib_alpha PF08702.5 gi|55376931|ref|YP_134782.1| - 0.002 18.2 27.1 0.4 10.8 2.7 4.2 4 0 0 4 4 4 2 Fibrinogen alpha/beta chain family ERM PF00769.14 gi|55376931|ref|YP_134782.1| - 0.0029 17.1 12.5 0.0029 17.1 8.7 3.5 2 1 1 3 3 3 1 Ezrin/radixin/moesin family WEMBL PF05701.6 gi|55376931|ref|YP_134782.1| - 0.003 16.1 41.1 0.011 14.2 28.6 1.8 1 1 0 1 1 1 1 Weak chloroplast movement under blue light DUF3584 PF12128.3 gi|55376931|ref|YP_134782.1| - 0.0032 14.8 43.0 0.037 11.3 7.6 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) TMF_DNA_bd PF12329.3 gi|55376931|ref|YP_134782.1| - 0.0036 17.0 40.5 0.27 11.0 1.8 6.3 3 3 3 6 6 6 2 TATA element modulatory factor 1 DNA binding Filament PF00038.16 gi|55376931|ref|YP_134782.1| - 0.0038 16.7 50.2 0.04 13.3 9.8 3.9 2 2 2 4 4 4 3 Intermediate filament protein AAA_23 PF13476.1 gi|55376931|ref|YP_134782.1| - 0.0053 17.0 31.2 4.6e+03 -2.3 21.5 4.3 1 1 0 1 1 0 0 AAA domain TPR_MLP1_2 PF07926.7 gi|55376931|ref|YP_134782.1| - 0.0057 16.4 40.0 0.0079 15.9 6.7 4.7 2 2 2 4 4 4 2 TPR/MLP1/MLP2-like protein DivIC PF04977.10 gi|55376931|ref|YP_134782.1| - 0.011 15.2 53.4 0.057 12.9 0.9 8.2 3 2 5 8 8 8 0 Septum formation initiator NPV_P10 PF05531.7 gi|55376931|ref|YP_134782.1| - 0.011 15.9 30.1 0.92 9.8 0.7 7.1 3 3 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|55376931|ref|YP_134782.1| - 0.012 14.2 46.7 0.035 12.7 5.0 4.3 2 2 1 4 4 4 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|55376931|ref|YP_134782.1| - 0.015 15.0 23.5 1.9 8.3 3.6 5.3 1 1 4 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.4 gi|55376931|ref|YP_134782.1| - 0.017 14.9 54.5 0.12 12.1 7.6 4.9 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FUSC PF04632.7 gi|55376931|ref|YP_134782.1| - 0.018 13.5 25.0 0.28 9.5 7.4 2.4 2 0 0 2 2 2 0 Fusaric acid resistance protein family BLOC1_2 PF10046.4 gi|55376931|ref|YP_134782.1| - 0.021 14.9 32.2 5.6 7.1 1.0 6.4 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.16 gi|55376931|ref|YP_134782.1| - 0.024 14.1 21.4 0.11 12.0 3.0 3.5 2 2 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain TMF_TATA_bd PF12325.3 gi|55376931|ref|YP_134782.1| - 0.029 14.0 54.3 0.039 13.6 8.1 4.5 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding CALCOCO1 PF07888.6 gi|55376931|ref|YP_134782.1| - 0.036 12.3 45.1 0.013 13.7 11.7 3.0 1 1 2 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like Atg14 PF10186.4 gi|55376931|ref|YP_134782.1| - 0.065 12.1 45.8 0.026 13.4 8.9 4.0 1 1 1 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Spectrin PF00435.16 gi|55376931|ref|YP_134782.1| - 0.076 13.3 38.4 0.28 11.4 3.3 5.7 2 2 3 5 5 5 0 Spectrin repeat Mnd1 PF03962.10 gi|55376931|ref|YP_134782.1| - 0.15 11.7 45.0 1.2 8.7 3.7 5.2 1 1 3 4 4 4 0 Mnd1 family Prefoldin PF02996.12 gi|55376931|ref|YP_134782.1| - 0.17 11.5 36.4 0.93 9.1 0.3 7.5 3 2 5 8 8 8 0 Prefoldin subunit Phage_GP20 PF06810.6 gi|55376931|ref|YP_134782.1| - 0.26 10.7 33.3 0.082 12.3 2.9 4.3 3 2 1 4 4 3 0 Phage minor structural protein GP20 Laminin_I PF06008.9 gi|55376931|ref|YP_134782.1| - 0.29 10.4 31.9 0.28 10.4 10.0 3.1 2 1 1 3 3 3 0 Laminin Domain I ATG16 PF08614.6 gi|55376931|ref|YP_134782.1| - 0.31 10.8 53.6 1.1 9.0 12.9 4.1 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) Prefoldin_2 PF01920.15 gi|55376931|ref|YP_134782.1| - 0.35 10.6 43.7 2 8.2 4.4 6.8 2 2 2 5 5 5 0 Prefoldin subunit DUF4200 PF13863.1 gi|55376931|ref|YP_134782.1| - 0.36 10.7 49.7 0.95 9.4 4.8 5.6 2 2 1 4 4 4 0 Domain of unknown function (DUF4200) FlxA PF14282.1 gi|55376931|ref|YP_134782.1| - 0.41 10.6 27.3 0.37 10.7 1.3 4.8 2 2 2 4 4 4 0 FlxA-like protein Laminin_II PF06009.7 gi|55376931|ref|YP_134782.1| - 0.49 10.1 30.0 0.16 11.7 3.2 4.0 2 2 1 3 3 3 0 Laminin Domain II OmpH PF03938.9 gi|55376931|ref|YP_134782.1| - 0.69 9.8 35.9 0.95 9.3 3.6 3.7 1 1 1 2 2 1 0 Outer membrane protein (OmpH-like) Peptidase_C6 PF00851.13 gi|55376931|ref|YP_134782.1| - 0.92 8.0 9.7 0.049 12.2 1.8 2.2 2 1 0 2 2 2 0 Helper component proteinase CCDC155 PF14662.1 gi|55376931|ref|YP_134782.1| - 0.99 8.9 49.3 0.67 9.5 12.5 4.3 2 2 2 4 4 4 0 Coiled-coil region of CCDC155 DUF972 PF06156.8 gi|55376931|ref|YP_134782.1| - 1.4 9.3 33.8 2.7 8.3 2.6 5.5 2 2 3 5 5 5 0 Protein of unknown function (DUF972) Cluap1 PF10234.4 gi|55376931|ref|YP_134782.1| - 1.6 7.8 34.2 0.02 14.0 2.0 4.0 2 2 2 4 4 4 0 Clusterin-associated protein-1 APG6 PF04111.7 gi|55376931|ref|YP_134782.1| - 1.6 7.6 50.0 0.28 10.1 10.6 4.1 1 1 2 4 4 4 0 Autophagy protein Apg6 Fez1 PF06818.10 gi|55376931|ref|YP_134782.1| - 1.8 8.5 42.1 6.9 6.6 13.2 3.1 2 2 0 2 2 2 0 Fez1 Occludin_ELL PF07303.8 gi|55376931|ref|YP_134782.1| - 2.9 8.6 22.1 2 9.1 0.3 4.8 3 2 1 4 4 3 0 Occludin homology domain DUF2730 PF10805.3 gi|55376931|ref|YP_134782.1| - 3.4 7.4 28.1 0.45 10.2 0.8 5.0 2 2 3 5 5 5 0 Protein of unknown function (DUF2730) DUF812 PF05667.6 gi|55376931|ref|YP_134782.1| - 3.9 5.8 41.1 4.3 5.7 9.3 3.7 1 1 0 2 2 2 0 Protein of unknown function (DUF812) COG5 PF10392.4 gi|55376931|ref|YP_134782.1| - 4.6 7.2 26.5 0.061 13.2 4.3 4.4 2 2 3 5 5 5 0 Golgi transport complex subunit 5 DUF1993 PF09351.5 gi|55376931|ref|YP_134782.1| - 4.7 7.1 8.4 2.5 8.0 0.8 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF1993) Spc24 PF08286.6 gi|55376931|ref|YP_134782.1| - 5.6 6.6 44.8 1.2 8.8 2.5 6.4 2 2 5 7 7 7 0 Spc24 subunit of Ndc80 FlaC_arch PF05377.6 gi|55376931|ref|YP_134782.1| - 6.2 6.8 34.8 3.7 7.5 1.9 7.5 5 3 4 9 9 8 0 Flagella accessory protein C (FlaC) Zw10 PF06248.8 gi|55376931|ref|YP_134782.1| - 6.6 4.7 19.4 0.22 9.6 3.7 2.5 2 1 0 2 2 2 0 Centromere/kinetochore Zw10 DUF869 PF05911.6 gi|55376931|ref|YP_134782.1| - 7.8 4.5 36.9 3.1 5.9 11.7 2.3 1 1 0 2 2 2 0 Plant protein of unknown function (DUF869) Bacillus_HBL PF05791.6 gi|55376931|ref|YP_134782.1| - 8.3 5.7 22.8 3.8 6.8 2.7 4.5 3 1 1 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) STAT_alpha PF01017.15 gi|55376931|ref|YP_134782.1| - 8.9 5.9 26.0 5.9 6.5 7.5 3.7 2 2 0 2 2 2 0 STAT protein, all-alpha domain Tropomyosin_1 PF12718.2 gi|55376931|ref|YP_134782.1| - 9.9 6.0 61.2 0.041 13.7 8.7 4.4 2 2 2 4 4 4 0 Tropomyosin like PTS_EIIC PF02378.13 gi|55376932|ref|YP_134783.1| - 5.2e-23 81.3 40.0 5.2e-23 81.3 27.7 1.9 2 0 0 2 2 2 2 Phosphotransferase system, EIIC PTS_EIIA_2 PF00359.17 gi|55376933|ref|YP_134784.1| - 2.3e-35 121.4 0.0 2.7e-35 121.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS-HPr PF00381.14 gi|55376934|ref|YP_134785.1| - 2.7e-23 81.6 0.1 3.3e-23 81.3 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site DUF1902 PF08972.6 gi|55376934|ref|YP_134785.1| - 0.064 12.8 0.7 8.9 5.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) PEP-utilizers_C PF02896.13 gi|55376935|ref|YP_134786.1| - 6.9e-104 346.8 0.0 9e-104 346.4 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.8 gi|55376935|ref|YP_134786.1| - 1.1e-27 96.2 0.2 3.7e-27 94.5 0.2 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.18 gi|55376935|ref|YP_134786.1| - 8.4e-25 86.1 0.6 1.9e-24 85.0 0.4 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|55376935|ref|YP_134786.1| - 0.001 18.0 1.1 0.0028 16.5 0.5 1.9 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family PTS_IIB PF02302.12 gi|55376936|ref|YP_134787.1| - 8.5e-17 61.4 1.4 1.2e-16 61.0 0.9 1.2 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit Hepar_II_III PF07940.8 gi|55376938|ref|YP_134789.1| - 2.7e-25 88.8 0.3 6.2e-25 87.6 0.2 1.6 1 0 0 1 1 1 1 Heparinase II/III-like protein Glycos_transf_1 PF00534.15 gi|55376939|ref|YP_134790.1| - 8.7e-22 77.3 0.0 1.2e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|55376939|ref|YP_134790.1| - 2.8e-19 69.6 0.0 8.6e-19 68.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|55376939|ref|YP_134790.1| - 4.3e-17 62.7 1.4 8e-17 61.8 1.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|55376939|ref|YP_134790.1| - 1.8e-08 34.4 0.0 3.6e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|55376939|ref|YP_134790.1| - 5.4e-08 32.7 0.0 1e-07 31.8 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF3515 PF12028.3 gi|55376940|ref|YP_134791.1| - 0.06 12.5 0.3 0.057 12.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3515) DDE_Tnp_1 PF01609.16 gi|55376941|ref|YP_134792.1| - 3.4e-23 82.3 2.2 8e-23 81.0 1.5 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|55376941|ref|YP_134792.1| - 0.00047 19.9 0.0 0.00073 19.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|55376941|ref|YP_134792.1| - 0.0032 17.4 0.8 0.0071 16.3 0.0 1.9 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|55376941|ref|YP_134792.1| - 0.01 15.9 0.1 0.022 14.9 0.1 1.6 1 0 0 1 1 1 0 Transposase DDE domain DUF1989 PF09347.5 gi|55376941|ref|YP_134792.1| - 0.075 12.4 0.3 0.14 11.6 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1989) rve PF00665.21 gi|55376941|ref|YP_134792.1| - 0.12 12.5 0.4 0.57 10.2 0.3 2.1 1 1 0 1 1 1 0 Integrase core domain