#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
TAT_signal	PF10518.9	gi|55376580|ref|YP_134431.1|	-	0.012	15.4	0.2	0.015	15.1	0.2	1.2	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Big_7	PF17957.1	gi|55376581|ref|YP_134432.1|	-	9.1e-06	26.3	3.8	9.1e-06	26.3	3.8	3.5	1	1	2	3	3	3	1	Bacterial	Ig	domain
Beta_helix	PF13229.6	gi|55376581|ref|YP_134432.1|	-	6e-05	22.9	3.6	0.00018	21.4	3.6	1.8	1	0	0	1	1	1	1	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|55376581|ref|YP_134432.1|	-	0.001	18.9	1.0	0.001	18.9	1.0	2.5	3	1	0	3	3	3	1	Pectate	lyase	superfamily	protein
Big_3_2	PF12245.8	gi|55376581|ref|YP_134432.1|	-	0.024	14.9	0.2	0.076	13.3	0.2	1.9	1	0	0	1	1	1	0	Bacterial	Ig-like	domain
CBM_4_9	PF02018.17	gi|55376581|ref|YP_134432.1|	-	0.056	13.7	3.7	0.5	10.6	0.5	2.7	2	0	0	2	2	2	0	Carbohydrate	binding	domain
DUF4625	PF15418.6	gi|55376581|ref|YP_134432.1|	-	0.077	13.2	0.2	0.3	11.3	0.1	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4625)
DUF5374	PF17344.2	gi|55376581|ref|YP_134432.1|	-	0.2	11.6	0.0	0.39	10.7	0.0	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5374)
Sulfatase	PF00884.23	gi|55376582|ref|YP_134433.1|	-	6e-42	144.1	0.0	8.2e-42	143.7	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|55376582|ref|YP_134433.1|	-	8.5e-07	28.9	1.4	1e-05	25.3	0.4	2.7	2	1	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|55376582|ref|YP_134433.1|	-	0.096	12.0	0.0	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Herpes_UL37_1	PF03970.13	gi|55376583|ref|YP_134434.1|	-	0.025	13.8	1.2	0.051	12.8	1.2	1.4	1	0	0	1	1	1	0	Herpesvirus	UL37	tegument	protein
Glycos_transf_2	PF00535.26	gi|55376584|ref|YP_134435.1|	-	2.1e-28	99.3	0.1	3.1e-28	98.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|55376584|ref|YP_134435.1|	-	1.3e-15	57.9	0.0	2.5e-15	57.0	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|55376584|ref|YP_134435.1|	-	1.2e-11	44.6	0.0	1.7e-11	44.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_5	PF13712.6	gi|55376584|ref|YP_134435.1|	-	0.042	13.5	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family
TORC_C	PF12886.7	gi|55376584|ref|YP_134435.1|	-	0.11	13.1	0.1	2	9.0	0.1	2.3	1	1	0	1	1	1	0	Transducer	of	regulated	CREB	activity,	C	terminus
Beta_helix	PF13229.6	gi|55376585|ref|YP_134436.1|	-	8.7e-06	25.7	9.1	8.7e-06	25.7	9.1	2.2	2	0	0	2	2	2	1	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|55376585|ref|YP_134436.1|	-	0.017	15.0	4.7	0.092	12.6	4.8	2.2	1	1	0	1	1	1	0	Pectate	lyase	superfamily	protein
DUF5374	PF17344.2	gi|55376585|ref|YP_134436.1|	-	0.13	12.2	0.0	0.31	11.0	0.0	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5374)
DUF4395	PF14340.6	gi|55376586|ref|YP_134437.1|	-	0.039	14.3	4.0	0.051	13.9	4.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
Phtf-FEM1B_bdg	PF12129.8	gi|55376586|ref|YP_134437.1|	-	0.11	12.3	4.6	0.15	11.9	4.6	1.2	1	0	0	1	1	1	0	Male	germ-cell	putative	homeodomain	transcription	factor
E1-E2_ATPase	PF00122.20	gi|55376586|ref|YP_134437.1|	-	0.26	10.8	0.9	0.34	10.4	0.9	1.2	1	0	0	1	1	1	0	E1-E2	ATPase
CbiQ	PF02361.16	gi|55376586|ref|YP_134437.1|	-	0.47	10.1	10.1	0.57	9.8	10.1	1.0	1	0	0	1	1	1	0	Cobalt	transport	protein
DUF2207	PF09972.9	gi|55376586|ref|YP_134437.1|	-	1.2	7.8	4.1	1.4	7.6	4.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF3043	PF11241.8	gi|55376586|ref|YP_134437.1|	-	2.4	8.2	4.1	2.9	7.9	4.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
Glycos_transf_1	PF00534.20	gi|55376587|ref|YP_134438.1|	-	8.5e-30	103.5	0.0	1.6e-29	102.7	0.0	1.4	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376587|ref|YP_134438.1|	-	3.4e-24	85.8	0.0	6e-24	85.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|55376587|ref|YP_134438.1|	-	1.7e-08	34.7	0.0	3.2e-08	33.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|55376587|ref|YP_134438.1|	-	2e-08	34.4	0.0	5.1e-08	33.1	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
DUF4555	PF15093.6	gi|55376587|ref|YP_134438.1|	-	0.074	12.3	0.0	0.14	11.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4555)
Glyco_trans_4_4	PF13579.6	gi|55376587|ref|YP_134438.1|	-	0.096	13.1	0.0	0.24	11.8	0.0	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|55376588|ref|YP_134439.1|	-	3.1e-35	121.2	0.0	5.1e-35	120.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376588|ref|YP_134439.1|	-	6.5e-30	104.3	0.0	1.2e-29	103.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|55376588|ref|YP_134439.1|	-	2.2e-19	70.1	0.1	1.4e-18	67.5	0.0	2.0	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|55376588|ref|YP_134439.1|	-	5.3e-11	43.2	0.2	1e-10	42.3	0.2	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|55376588|ref|YP_134439.1|	-	2.9e-07	30.8	0.0	2.9e-06	27.6	0.0	2.5	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
DUF1616	PF07760.11	gi|55376589|ref|YP_134440.1|	-	1.6e-78	264.1	0.1	1.9e-78	263.9	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
TMEM125	PF15109.6	gi|55376589|ref|YP_134440.1|	-	0.37	11.1	5.5	0.59	10.5	4.1	2.2	1	1	1	2	2	2	0	TMEM125	protein	family
SfLAP	PF11139.8	gi|55376589|ref|YP_134440.1|	-	1.6	8.1	10.2	1.1	8.7	4.6	2.6	1	1	1	2	2	2	0	Sap,	sulfolipid-1-addressing	protein
Epimerase_2	PF02350.19	gi|55376590|ref|YP_134441.1|	-	2.3e-105	352.3	0.0	2.6e-105	352.1	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_trans_4_4	PF13579.6	gi|55376590|ref|YP_134441.1|	-	0.033	14.6	0.9	0.17	12.3	0.1	2.5	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|55376590|ref|YP_134441.1|	-	0.04	13.9	0.0	0.22	11.5	0.0	2.2	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
UDPG_MGDP_dh_N	PF03721.14	gi|55376591|ref|YP_134442.1|	-	2.6e-21	76.1	0.0	4.4e-21	75.3	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|55376591|ref|YP_134442.1|	-	6.2e-21	74.4	0.0	1.1e-20	73.6	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|55376591|ref|YP_134442.1|	-	1.3e-15	57.7	0.0	4.5e-15	56.0	0.0	1.9	1	1	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Glycos_transf_2	PF00535.26	gi|55376592|ref|YP_134443.1|	-	7.2e-26	91.0	0.0	1e-25	90.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|55376592|ref|YP_134443.1|	-	3.7e-10	40.1	0.2	8.3e-10	38.9	0.1	1.6	1	1	1	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|55376592|ref|YP_134443.1|	-	7.7e-07	29.5	0.0	1.3e-05	25.6	0.0	2.4	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Epimerase	PF01370.21	gi|55376593|ref|YP_134444.1|	-	2.5e-61	207.2	0.0	3e-61	207.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|55376593|ref|YP_134444.1|	-	2.8e-52	178.2	0.0	7.8e-52	176.7	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|55376593|ref|YP_134444.1|	-	1.3e-21	76.8	0.0	1.9e-21	76.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|55376593|ref|YP_134444.1|	-	4e-21	75.4	0.2	2.9e-19	69.3	0.2	2.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|55376593|ref|YP_134444.1|	-	1.9e-16	60.0	0.0	2.1e-16	59.8	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|55376593|ref|YP_134444.1|	-	7.2e-10	38.5	0.1	1.4e-07	31.0	0.0	2.5	1	1	1	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|55376593|ref|YP_134444.1|	-	1.2e-09	38.3	0.0	2.2e-09	37.5	0.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|55376593|ref|YP_134444.1|	-	1.8e-06	27.7	0.1	3.6e-06	26.7	0.1	1.5	1	0	0	1	1	1	1	NmrA-like	family
Ldh_1_N	PF00056.23	gi|55376593|ref|YP_134444.1|	-	0.0026	17.9	0.1	0.07	13.2	0.1	2.2	2	0	0	2	2	2	1	lactate/malate	dehydrogenase,	NAD	binding	domain
adh_short	PF00106.25	gi|55376593|ref|YP_134444.1|	-	0.0065	15.9	0.1	0.011	15.2	0.1	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|55376593|ref|YP_134444.1|	-	0.016	15.5	0.5	0.055	13.7	0.1	1.9	2	0	0	2	2	2	0	TrkA-N	domain
Methyltransf_11	PF08241.12	gi|55376593|ref|YP_134444.1|	-	0.055	14.1	0.1	1.7	9.3	0.0	2.3	2	0	0	2	2	2	0	Methyltransferase	domain
NAD_binding_7	PF13241.6	gi|55376593|ref|YP_134444.1|	-	0.1	13.0	0.1	0.18	12.3	0.1	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
KR	PF08659.10	gi|55376593|ref|YP_134444.1|	-	0.27	11.1	1.8	3.3	7.6	1.8	2.6	1	1	0	1	1	1	0	KR	domain
DUF4147	PF13660.6	gi|55376594|ref|YP_134445.1|	-	1.3e-69	234.2	0.6	2e-69	233.6	0.6	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|55376594|ref|YP_134445.1|	-	1.9e-27	95.6	6.1	5e-27	94.2	6.1	1.8	1	0	0	1	1	1	1	MOFRL	family
DUF362	PF04015.12	gi|55376595|ref|YP_134446.1|	-	9.5e-05	22.7	0.0	0.00019	21.8	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Lar_N	PF09861.9	gi|55376595|ref|YP_134446.1|	-	0.00032	19.9	0.0	0.00056	19.1	0.0	1.3	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
LUD_dom	PF02589.15	gi|55376596|ref|YP_134447.1|	-	1.1e-43	149.1	0.2	2e-43	148.4	0.2	1.4	1	0	0	1	1	1	1	LUD	domain
Fer4_8	PF13183.6	gi|55376596|ref|YP_134447.1|	-	2.9e-08	34.0	3.1	6.4e-08	32.9	3.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|55376596|ref|YP_134447.1|	-	6.7e-08	32.5	3.8	0.00021	21.3	0.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|55376596|ref|YP_134447.1|	-	4.8e-07	29.8	2.6	1.2e-06	28.6	2.6	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|55376596|ref|YP_134447.1|	-	8.4e-07	29.4	2.1	1.6e-06	28.5	2.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|55376596|ref|YP_134447.1|	-	1.7e-06	28.5	5.6	4e-06	27.3	5.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|55376596|ref|YP_134447.1|	-	7.4e-05	22.8	7.5	0.00038	20.5	7.5	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|55376596|ref|YP_134447.1|	-	9.5e-05	22.1	13.5	0.00012	21.7	3.2	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|55376596|ref|YP_134447.1|	-	0.0001	22.5	1.0	0.012	15.8	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|55376596|ref|YP_134447.1|	-	0.00018	21.5	2.8	0.00018	21.5	2.8	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|55376596|ref|YP_134447.1|	-	0.00061	20.7	2.9	0.032	15.2	0.3	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|55376596|ref|YP_134447.1|	-	0.0097	16.0	15.2	0.038	14.1	4.2	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|55376596|ref|YP_134447.1|	-	0.03	14.8	3.2	0.03	14.8	3.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|55376596|ref|YP_134447.1|	-	0.041	14.8	5.9	0.041	14.8	5.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|55376596|ref|YP_134447.1|	-	0.092	12.5	4.3	0.11	12.3	0.3	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_22	PF17179.4	gi|55376596|ref|YP_134447.1|	-	0.14	13.0	8.3	0.12	13.2	1.3	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|55376596|ref|YP_134447.1|	-	4.9	8.0	7.0	1	10.1	0.3	3.4	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
LUD_dom	PF02589.15	gi|55376597|ref|YP_134448.1|	-	2.7e-15	56.6	0.8	1.3e-14	54.3	0.1	1.9	1	1	1	2	2	2	1	LUD	domain
HEAT_2	PF13646.6	gi|55376598|ref|YP_134449.1|	-	2e-06	28.1	0.8	4.8e-06	26.9	0.5	1.7	1	1	0	1	1	1	1	HEAT	repeats
HEAT_EZ	PF13513.6	gi|55376598|ref|YP_134449.1|	-	5.4e-05	23.6	1.0	0.44	11.1	0.0	2.8	2	1	1	3	3	3	2	HEAT-like	repeat
HEAT	PF02985.22	gi|55376598|ref|YP_134449.1|	-	0.0068	16.6	0.1	0.42	11.0	0.0	3.0	3	0	0	3	3	3	1	HEAT	repeat
TPR_16	PF13432.6	gi|55376598|ref|YP_134449.1|	-	0.091	13.4	3.8	0.44	11.3	0.7	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Repressor_Mnt	PF11423.8	gi|55376598|ref|YP_134449.1|	-	0.1	12.4	0.4	5.4	6.9	0.1	2.4	2	0	0	2	2	2	0	Regulatory	protein	Mnt
Utp21	PF04192.12	gi|55376598|ref|YP_134449.1|	-	0.14	11.7	0.0	0.18	11.3	0.0	1.1	1	0	0	1	1	1	0	Utp21	specific	WD40	associated	putative	domain
TPR_14	PF13428.6	gi|55376598|ref|YP_134449.1|	-	0.74	10.8	3.3	0.52	11.3	0.6	2.2	2	1	0	2	2	2	0	Tetratricopeptide	repeat
IclR	PF01614.18	gi|55376599|ref|YP_134450.1|	-	7.2e-32	109.9	0.0	1.2e-30	106.0	0.0	2.1	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|55376599|ref|YP_134450.1|	-	4e-10	39.3	0.2	1.6e-09	37.4	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|55376599|ref|YP_134450.1|	-	6e-06	26.0	0.0	1.2e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|55376599|ref|YP_134450.1|	-	7.3e-05	22.6	0.1	0.00018	21.3	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|55376599|ref|YP_134450.1|	-	0.00012	21.9	0.0	0.00058	19.7	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|55376599|ref|YP_134450.1|	-	0.00016	21.5	0.1	0.00037	20.3	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|55376599|ref|YP_134450.1|	-	0.00031	20.2	0.0	0.00083	18.9	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|55376599|ref|YP_134450.1|	-	0.00052	20.0	0.0	0.0014	18.7	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|55376599|ref|YP_134450.1|	-	0.007	16.7	0.1	0.014	15.7	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|55376599|ref|YP_134450.1|	-	0.0087	16.2	0.1	0.028	14.6	0.1	1.8	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FaeA	PF04703.12	gi|55376599|ref|YP_134450.1|	-	0.014	15.8	0.1	0.064	13.6	0.0	1.9	2	0	0	2	2	2	0	FaeA-like	protein
HTH_34	PF13601.6	gi|55376599|ref|YP_134450.1|	-	0.12	12.5	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
ANT	PF03374.14	gi|55376599|ref|YP_134450.1|	-	0.13	12.6	0.0	0.21	11.9	0.0	1.4	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
LexA_DNA_bind	PF01726.16	gi|55376599|ref|YP_134450.1|	-	0.15	11.9	0.0	0.46	10.3	0.0	1.8	2	0	0	2	2	2	0	LexA	DNA	binding	domain
ADH_N	PF08240.12	gi|55376600|ref|YP_134451.1|	-	1.8e-33	114.7	2.6	1.8e-33	114.7	2.6	1.9	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|55376600|ref|YP_134451.1|	-	3.7e-21	75.5	0.0	5.8e-21	74.8	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|55376600|ref|YP_134451.1|	-	1.1e-10	41.4	0.0	2.2e-10	40.4	0.0	1.5	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|55376600|ref|YP_134451.1|	-	6.3e-05	24.0	0.0	0.00012	23.2	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
F420_oxidored	PF03807.17	gi|55376600|ref|YP_134451.1|	-	0.00076	20.0	0.0	0.0014	19.1	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|55376600|ref|YP_134451.1|	-	0.029	14.6	0.0	0.062	13.6	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Rossmann-like	PF10727.9	gi|55376600|ref|YP_134451.1|	-	0.053	13.4	0.0	0.15	11.9	0.0	1.8	2	0	0	2	2	2	0	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|55376600|ref|YP_134451.1|	-	0.15	11.2	0.1	0.23	10.7	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
SBP_bac_1	PF01547.25	gi|55376601|ref|YP_134452.1|	-	6.2e-24	85.5	4.0	9.4e-24	84.9	4.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|55376601|ref|YP_134452.1|	-	0.055	13.3	1.1	0.099	12.5	1.1	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|55376602|ref|YP_134453.1|	-	2.3e-18	66.6	21.5	2.3e-18	66.6	21.5	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|55376603|ref|YP_134454.1|	-	3e-17	63.0	18.8	3e-17	63.0	18.8	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PMT_4TMC	PF16192.5	gi|55376603|ref|YP_134454.1|	-	0.5	9.9	10.6	0.36	10.4	5.0	3.0	1	1	1	2	2	2	0	C-terminal	four	TMM	region	of	protein-O-mannosyltransferase
TMEMspv1-c74-12	PF11044.8	gi|55376603|ref|YP_134454.1|	-	2.9	8.0	5.8	0.34	10.9	0.7	2.2	2	0	0	2	2	2	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
ABC_tran	PF00005.27	gi|55376604|ref|YP_134455.1|	-	6.6e-32	110.9	0.0	1.4e-31	109.8	0.0	1.5	2	0	0	2	2	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|55376604|ref|YP_134455.1|	-	2.2e-12	47.6	0.1	2.1e-11	44.5	0.0	2.6	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|55376604|ref|YP_134455.1|	-	2.1e-10	40.6	0.1	6.4e-10	39.1	0.1	1.9	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|55376604|ref|YP_134455.1|	-	3e-08	33.9	0.0	0.0016	18.3	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|55376604|ref|YP_134455.1|	-	4.8e-08	33.4	0.0	1.5e-07	31.8	0.0	2.0	1	0	0	1	1	1	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|55376604|ref|YP_134455.1|	-	0.00024	20.6	0.1	0.00052	19.5	0.1	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.12	gi|55376604|ref|YP_134455.1|	-	0.00027	20.3	0.0	0.029	13.7	0.0	2.3	2	0	0	2	2	2	1	Zeta	toxin
AAA_29	PF13555.6	gi|55376604|ref|YP_134455.1|	-	0.00045	19.9	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|55376604|ref|YP_134455.1|	-	0.0006	19.7	0.0	0.0012	18.7	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_33	PF13671.6	gi|55376604|ref|YP_134455.1|	-	0.00097	19.3	0.0	0.0075	16.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|55376604|ref|YP_134455.1|	-	0.0013	18.5	0.8	0.52	10.0	0.0	2.8	3	0	0	3	3	3	1	Cytidylate	kinase
AAA_22	PF13401.6	gi|55376604|ref|YP_134455.1|	-	0.0044	17.3	0.0	0.014	15.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|55376604|ref|YP_134455.1|	-	0.0087	15.7	0.2	0.64	9.6	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|55376604|ref|YP_134455.1|	-	0.016	15.6	0.0	0.035	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|55376604|ref|YP_134455.1|	-	0.019	14.7	0.1	0.036	13.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|55376604|ref|YP_134455.1|	-	0.029	14.9	0.0	0.056	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|55376604|ref|YP_134455.1|	-	0.033	14.6	0.1	0.15	12.5	0.0	2.0	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|55376604|ref|YP_134455.1|	-	0.054	13.7	0.0	0.11	12.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
TOBE	PF03459.17	gi|55376604|ref|YP_134455.1|	-	0.057	13.7	0.0	0.17	12.2	0.0	1.8	1	0	0	1	1	1	0	TOBE	domain
SAM_LFY	PF01698.16	gi|55376604|ref|YP_134455.1|	-	0.066	13.2	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein	SAM	domain
AAA_18	PF13238.6	gi|55376604|ref|YP_134455.1|	-	0.076	13.6	0.0	0.16	12.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|55376604|ref|YP_134455.1|	-	0.096	12.4	0.0	0.18	11.4	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
DUF3987	PF13148.6	gi|55376604|ref|YP_134455.1|	-	0.11	11.5	0.0	0.53	9.2	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
MMR_HSR1	PF01926.23	gi|55376604|ref|YP_134455.1|	-	0.11	12.5	0.1	0.57	10.3	0.0	2.1	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.22	gi|55376604|ref|YP_134455.1|	-	0.15	12.5	0.1	0.4	11.1	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
Capsid-VNN	PF11729.8	gi|55376604|ref|YP_134455.1|	-	0.15	11.0	0.0	0.31	10.0	0.0	1.4	1	0	0	1	1	1	0	nodavirus	capsid	protein
Aldolase_II	PF00596.21	gi|55376605|ref|YP_134456.1|	-	3e-49	167.5	0.2	3.5e-49	167.3	0.2	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
FGGY_C	PF02782.16	gi|55376606|ref|YP_134457.1|	-	7.6e-26	91.1	0.0	1.1e-25	90.6	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FGGY_N	PF00370.21	gi|55376606|ref|YP_134457.1|	-	1.3e-18	67.5	0.0	1.8e-18	67.0	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
adh_short_C2	PF13561.6	gi|55376607|ref|YP_134458.1|	-	1.4e-73	247.3	0.8	1.6e-73	247.2	0.8	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|55376607|ref|YP_134458.1|	-	2.3e-59	200.1	2.1	2.8e-59	199.9	2.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|55376607|ref|YP_134458.1|	-	5e-13	49.4	0.6	6.8e-13	48.9	0.6	1.2	1	0	0	1	1	1	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|55376607|ref|YP_134458.1|	-	0.0038	17.5	0.1	0.0069	16.7	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Epimerase	PF01370.21	gi|55376607|ref|YP_134458.1|	-	0.067	12.6	0.4	0.1	12.0	0.4	1.4	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
DUF948	PF06103.11	gi|55376607|ref|YP_134458.1|	-	0.13	12.5	0.9	0.31	11.3	0.9	1.6	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
MR_MLE_C	PF13378.6	gi|55376608|ref|YP_134459.1|	-	1.9e-62	210.7	0.3	2.7e-62	210.2	0.3	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|55376608|ref|YP_134459.1|	-	2.3e-21	76.1	0.0	5e-21	75.1	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
ADH_N	PF08240.12	gi|55376609|ref|YP_134460.1|	-	1.3e-31	108.7	0.2	2.4e-31	107.8	0.2	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|55376609|ref|YP_134460.1|	-	7.6e-29	100.3	0.5	1.1e-28	99.8	0.5	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|55376609|ref|YP_134460.1|	-	3.5e-12	46.3	1.9	5.3e-12	45.7	1.9	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|55376609|ref|YP_134460.1|	-	3.8e-06	28.0	0.5	9.4e-06	26.7	0.5	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_3	PF03447.16	gi|55376609|ref|YP_134460.1|	-	0.0015	19.2	1.7	0.0026	18.4	1.7	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|55376609|ref|YP_134460.1|	-	0.025	13.9	0.1	0.045	13.1	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Bac_luciferase	PF00296.20	gi|55376610|ref|YP_134461.1|	-	4.5e-34	118.3	2.1	5e-34	118.2	2.1	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF2309	PF10070.9	gi|55376611|ref|YP_134462.1|	-	1.3e-266	886.7	0.0	1.5e-266	886.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Polyketide_cyc2	PF10604.9	gi|55376611|ref|YP_134462.1|	-	0.016	15.5	0.7	0.051	13.8	0.7	1.9	1	0	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Proton_antipo_M	PF00361.20	gi|55376612|ref|YP_134463.1|	-	3.8e-35	121.5	17.6	3.8e-35	121.5	17.6	2.3	1	1	1	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|55376612|ref|YP_134463.1|	-	4.2e-07	29.9	0.2	4.2e-07	29.9	0.2	2.3	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
HTH_24	PF13412.6	gi|55376613|ref|YP_134464.1|	-	2.9e-12	46.0	0.2	4.4e-12	45.4	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|55376613|ref|YP_134464.1|	-	3.3e-11	42.8	0.9	6.3e-11	41.9	0.9	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|55376613|ref|YP_134464.1|	-	1.2e-05	25.2	0.0	2e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|55376613|ref|YP_134464.1|	-	3.9e-05	23.6	0.0	0.0001	22.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|55376613|ref|YP_134464.1|	-	0.00012	21.7	0.1	0.005	16.6	0.1	2.2	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376613|ref|YP_134464.1|	-	0.00021	21.1	0.0	0.00042	20.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|55376613|ref|YP_134464.1|	-	0.00026	20.8	0.0	0.00052	19.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|55376613|ref|YP_134464.1|	-	0.00035	20.3	0.0	0.00063	19.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|55376613|ref|YP_134464.1|	-	0.00049	20.4	0.0	0.0011	19.2	0.0	1.6	2	0	0	2	2	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|55376613|ref|YP_134464.1|	-	0.0014	18.8	0.0	0.0027	17.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|55376613|ref|YP_134464.1|	-	0.0032	17.1	0.0	0.0058	16.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.6	gi|55376613|ref|YP_134464.1|	-	0.0075	16.7	0.1	0.018	15.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Put_DNA-bind_N	PF06971.13	gi|55376613|ref|YP_134464.1|	-	0.018	15.0	0.1	0.031	14.3	0.1	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_Mga	PF08280.11	gi|55376613|ref|YP_134464.1|	-	0.022	14.8	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_19	PF12844.7	gi|55376613|ref|YP_134464.1|	-	0.03	14.3	0.1	0.076	13.0	0.0	1.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|55376613|ref|YP_134464.1|	-	0.051	13.0	0.2	0.11	11.9	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR	PF01047.22	gi|55376613|ref|YP_134464.1|	-	0.078	12.9	0.0	0.23	11.4	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.6	gi|55376613|ref|YP_134464.1|	-	0.11	12.5	0.1	0.23	11.4	0.0	1.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|55376613|ref|YP_134464.1|	-	0.15	12.0	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Peripla_BP_2	PF01497.18	gi|55376614|ref|YP_134465.1|	-	5.4e-11	42.5	0.0	7.6e-11	42.0	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|55376614|ref|YP_134465.1|	-	0.00038	20.2	0.0	0.00075	19.2	0.0	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peripla_BP_2	PF01497.18	gi|55376615|ref|YP_134466.1|	-	5.5e-22	78.5	0.1	8.9e-22	77.8	0.1	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
YqgF	PF14639.6	gi|55376615|ref|YP_134466.1|	-	0.046	13.5	0.0	0.082	12.7	0.0	1.4	1	0	0	1	1	1	0	Holliday-junction	resolvase-like	of	SPT6
Peripla_BP_2	PF01497.18	gi|55376616|ref|YP_134467.1|	-	1.7e-17	63.8	0.0	2.5e-17	63.2	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|55376616|ref|YP_134467.1|	-	0.013	15.3	0.2	0.024	14.5	0.2	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Sugar_tr	PF00083.24	gi|55376617|ref|YP_134468.1|	-	4.5e-125	418.1	22.5	5.1e-125	417.9	22.5	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|55376617|ref|YP_134468.1|	-	1.6e-38	132.5	62.8	3e-29	102.1	28.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TRI12	PF06609.13	gi|55376617|ref|YP_134468.1|	-	2.5e-07	29.5	3.4	2.5e-07	29.5	3.4	2.1	2	0	0	2	2	2	1	Fungal	trichothecene	efflux	pump	(TRI12)
MFS_1_like	PF12832.7	gi|55376617|ref|YP_134468.1|	-	0.0061	15.5	0.5	0.0061	15.5	0.5	2.8	2	1	1	3	3	3	1	MFS_1	like	family
Bac_export_3	PF01313.19	gi|55376617|ref|YP_134468.1|	-	0.017	15.0	0.2	0.017	15.0	0.2	3.8	3	1	1	4	4	4	0	Bacterial	export	proteins,	family	3
MFS_2	PF13347.6	gi|55376617|ref|YP_134468.1|	-	0.025	13.2	39.6	0.077	11.5	4.8	3.9	3	1	1	4	4	4	0	MFS/sugar	transport	protein
MFS_3	PF05977.13	gi|55376617|ref|YP_134468.1|	-	0.17	10.3	17.6	0.028	12.8	7.0	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Fructosamin_kin	PF03881.14	gi|55376618|ref|YP_134469.1|	-	3.1e-43	148.0	0.0	3.9e-43	147.7	0.0	1.0	1	0	0	1	1	1	1	Fructosamine	kinase
APH	PF01636.23	gi|55376618|ref|YP_134469.1|	-	4.1e-13	49.8	5.3	5.6e-13	49.4	5.3	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
APH_6_hur	PF04655.14	gi|55376618|ref|YP_134469.1|	-	0.044	13.1	0.2	0.11	11.8	0.0	1.7	2	0	0	2	2	2	0	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
HTH_20	PF12840.7	gi|55376619|ref|YP_134470.1|	-	2.5e-11	43.5	0.2	3.3e-11	43.1	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376619|ref|YP_134470.1|	-	4.6e-07	29.6	0.0	9.2e-07	28.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|55376619|ref|YP_134470.1|	-	7.3e-07	29.0	0.0	1.7e-06	27.8	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|55376619|ref|YP_134470.1|	-	9.7e-07	28.3	0.0	2e-06	27.2	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|55376619|ref|YP_134470.1|	-	2e-05	25.0	0.0	3.7e-05	24.1	0.0	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.9	gi|55376619|ref|YP_134470.1|	-	0.0015	18.8	0.0	0.0019	18.5	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
MarR	PF01047.22	gi|55376619|ref|YP_134470.1|	-	0.016	15.1	0.0	0.028	14.3	0.0	1.4	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|55376619|ref|YP_134470.1|	-	0.031	14.2	0.0	0.051	13.5	0.0	1.4	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
B-block_TFIIIC	PF04182.12	gi|55376619|ref|YP_134470.1|	-	0.053	13.7	0.0	0.07	13.3	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_Crp_2	PF13545.6	gi|55376619|ref|YP_134470.1|	-	0.15	12.0	0.0	0.22	11.5	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF123	PF01986.16	gi|55376619|ref|YP_134470.1|	-	0.17	12.4	0.0	0.26	11.8	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF123
HTH_45	PF14947.6	gi|55376619|ref|YP_134470.1|	-	0.22	11.6	0.0	0.29	11.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|55376620|ref|YP_134471.1|	-	3.4e-06	26.8	0.0	8.5e-06	25.5	0.0	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376620|ref|YP_134471.1|	-	3.6e-06	26.8	0.1	1.1e-05	25.3	0.0	1.8	2	0	0	2	2	2	1	MarR	family
RP-C	PF03428.13	gi|55376620|ref|YP_134471.1|	-	0.00031	20.4	0.7	0.0013	18.4	0.0	2.2	3	1	0	3	3	3	1	Replication	protein	C	N-terminal	domain
TrmB	PF01978.19	gi|55376620|ref|YP_134471.1|	-	0.00061	19.6	0.0	0.0012	18.7	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|55376620|ref|YP_134471.1|	-	0.0008	19.3	0.0	0.0018	18.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|55376620|ref|YP_134471.1|	-	0.0012	19.3	0.0	0.0045	17.5	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|55376620|ref|YP_134471.1|	-	0.016	15.3	0.0	0.039	14.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|55376620|ref|YP_134471.1|	-	0.041	13.7	0.0	0.077	12.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|55376620|ref|YP_134471.1|	-	0.047	14.0	0.0	0.1	13.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
GntR	PF00392.21	gi|55376620|ref|YP_134471.1|	-	0.052	13.2	0.0	0.26	11.0	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
DUF1690	PF07956.11	gi|55376620|ref|YP_134471.1|	-	0.11	12.9	1.4	0.18	12.2	1.4	1.4	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
IL2	PF00715.17	gi|55376620|ref|YP_134471.1|	-	0.14	12.1	0.0	0.19	11.6	0.0	1.2	1	0	0	1	1	1	0	Interleukin	2
ABC_tran	PF00005.27	gi|55376624|ref|YP_134475.1|	-	2.5e-24	86.3	0.0	3.7e-24	85.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|55376624|ref|YP_134475.1|	-	2.3e-12	47.4	0.0	7.6e-07	29.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|55376624|ref|YP_134475.1|	-	0.00029	20.7	0.0	0.29	10.8	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
SMC_N	PF02463.19	gi|55376624|ref|YP_134475.1|	-	0.00087	18.8	0.2	0.44	9.9	0.0	2.4	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
MeaB	PF03308.16	gi|55376624|ref|YP_134475.1|	-	0.0022	17.0	0.1	0.0035	16.4	0.1	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_23	PF13476.6	gi|55376624|ref|YP_134475.1|	-	0.0047	17.5	0.1	0.0074	16.8	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|55376624|ref|YP_134475.1|	-	0.01	16.3	0.0	0.018	15.5	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|55376624|ref|YP_134475.1|	-	0.017	14.9	0.0	0.18	11.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|55376624|ref|YP_134475.1|	-	0.019	15.4	0.5	1.3	9.4	0.1	2.7	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|55376624|ref|YP_134475.1|	-	0.057	13.7	0.0	0.095	13.0	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|55376624|ref|YP_134475.1|	-	0.1	12.4	0.1	0.17	11.7	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
SRP54	PF00448.22	gi|55376624|ref|YP_134475.1|	-	0.15	11.7	0.0	0.31	10.6	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.6	gi|55376624|ref|YP_134475.1|	-	0.15	11.8	0.1	0.29	10.9	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.17	gi|55376624|ref|YP_134475.1|	-	0.16	11.7	0.1	0.38	10.5	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_13	PF13166.6	gi|55376624|ref|YP_134475.1|	-	0.17	10.5	0.2	6.8	5.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
zf-C2HC5	PF06221.13	gi|55376625|ref|YP_134476.1|	-	2	8.5	5.9	5.1	7.2	5.9	1.6	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
LtrA	PF06772.11	gi|55376625|ref|YP_134476.1|	-	9.7	5.3	25.5	0.026	13.7	11.1	2.7	1	1	2	3	3	3	0	Bacterial	low	temperature	requirement	A	protein	(LtrA)
Nitroreductase	PF00881.24	gi|55376626|ref|YP_134477.1|	-	2.4e-18	66.7	0.5	3e-15	56.7	0.5	2.1	1	1	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|55376626|ref|YP_134477.1|	-	1.8e-05	24.5	0.0	5.6e-05	22.8	0.0	1.7	2	0	0	2	2	2	1	Putative	TM	nitroreductase
DsbD	PF02683.15	gi|55376630|ref|YP_134481.1|	-	1.4e-11	44.7	15.8	2.8e-11	43.7	15.8	1.4	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Redoxin	PF08534.10	gi|55376631|ref|YP_134482.1|	-	1.2e-07	31.6	0.0	1.4e-07	31.4	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|55376631|ref|YP_134482.1|	-	0.00013	22.2	0.0	0.00022	21.5	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.20	gi|55376631|ref|YP_134482.1|	-	0.00055	19.9	0.0	0.0023	17.9	0.0	1.8	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|55376631|ref|YP_134482.1|	-	0.00056	20.3	0.0	0.00083	19.8	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
NOG1	PF06858.14	gi|55376631|ref|YP_134482.1|	-	0.14	12.0	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	Nucleolar	GTP-binding	protein	1	(NOG1)
SCO1-SenC	PF02630.14	gi|55376632|ref|YP_134483.1|	-	2.1e-19	69.8	0.1	2.6e-19	69.4	0.1	1.1	1	0	0	1	1	1	1	SCO1/SenC
TAT_signal	PF10518.9	gi|55376632|ref|YP_134483.1|	-	0.0067	16.2	3.2	0.011	15.5	3.2	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
AhpC-TSA	PF00578.21	gi|55376632|ref|YP_134483.1|	-	0.11	12.4	0.0	3.7	7.5	0.0	2.5	1	1	1	2	2	2	0	AhpC/TSA	family
FmdA_AmdA	PF03069.15	gi|161723228|ref|YP_134484.2|	-	2.1e-157	523.8	0.0	2.4e-157	523.6	0.0	1.0	1	0	0	1	1	1	1	Acetamidase/Formamidase	family
Cpn60_TCP1	PF00118.24	gi|55376634|ref|YP_134485.1|	-	1.2e-145	485.9	0.2	1.4e-145	485.7	0.2	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Nitro_FeMo-Co	PF02579.17	gi|55376634|ref|YP_134485.1|	-	0.03	14.7	0.9	0.077	13.3	0.2	2.1	2	0	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
Usp	PF00582.26	gi|55376635|ref|YP_134486.1|	-	9.7e-06	26.1	1.4	0.0058	17.1	0.1	2.8	2	1	0	2	2	2	2	Universal	stress	protein	family
Phage_CI_repr	PF07022.13	gi|55376635|ref|YP_134486.1|	-	0.16	12.1	0.0	0.31	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
AA_permease_2	PF13520.6	gi|55376636|ref|YP_134487.1|	-	5.4e-43	147.4	39.7	6.4e-43	147.2	39.7	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|55376636|ref|YP_134487.1|	-	1.8e-41	142.3	38.8	2.2e-41	142.0	38.8	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|55376636|ref|YP_134487.1|	-	0.031	13.1	17.0	0.014	14.3	13.7	2.0	2	1	0	2	2	2	0	Spore	germination	protein
Prok-JAB	PF14464.6	gi|55376637|ref|YP_134488.1|	-	1.8e-07	30.9	0.3	5.7e-07	29.3	0.3	1.7	1	1	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
SSF	PF00474.17	gi|55376638|ref|YP_134489.1|	-	1.3e-27	96.8	36.4	1.8e-26	92.9	27.8	2.4	2	1	0	2	2	2	2	Sodium:solute	symporter	family
PhoU	PF01895.19	gi|55376639|ref|YP_134490.1|	-	6e-12	45.9	0.5	1e-09	38.7	0.0	2.6	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|55376639|ref|YP_134490.1|	-	3.6e-09	36.4	0.4	8.9e-09	35.1	0.0	1.8	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
Arginase	PF00491.21	gi|55376640|ref|YP_134491.1|	-	5.9e-74	249.1	0.1	7.2e-74	248.8	0.1	1.0	1	0	0	1	1	1	1	Arginase	family
OrfB_Zn_ribbon	PF07282.11	gi|55376640|ref|YP_134491.1|	-	0.24	11.4	0.0	0.47	10.4	0.0	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Methyltransf_11	PF08241.12	gi|55376641|ref|YP_134492.1|	-	9.4e-09	35.8	0.0	1.6e-08	35.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|55376641|ref|YP_134492.1|	-	2.9e-05	24.7	0.0	0.00023	21.8	0.0	2.1	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|55376641|ref|YP_134492.1|	-	0.00047	20.0	0.0	0.00063	19.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|55376641|ref|YP_134492.1|	-	0.0015	19.2	0.0	0.0026	18.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|55376641|ref|YP_134492.1|	-	0.0033	17.3	0.0	0.0041	17.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|55376641|ref|YP_134492.1|	-	0.014	15.0	0.0	0.017	14.7	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
DUF429	PF04250.13	gi|55376641|ref|YP_134492.1|	-	0.042	13.6	0.4	0.078	12.8	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF429)
Methyltransf_29	PF03141.16	gi|55376641|ref|YP_134492.1|	-	0.063	11.8	0.0	0.077	11.5	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Gly-zipper_YMGG	PF13441.6	gi|55376642|ref|YP_134493.1|	-	0.086	12.6	12.9	0.19	11.5	12.9	1.6	1	1	0	1	1	1	0	YMGG-like	Gly-zipper
TraT	PF05818.12	gi|55376642|ref|YP_134493.1|	-	0.089	12.5	0.5	0.097	12.4	0.5	1.2	1	0	0	1	1	1	0	Enterobacterial	TraT	complement	resistance	protein
DUF2076	PF09849.9	gi|55376642|ref|YP_134493.1|	-	0.16	12.0	10.6	0.17	11.9	10.6	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2076)
Gly-zipper_Omp	PF13488.6	gi|55376642|ref|YP_134493.1|	-	0.18	11.8	14.1	0.32	11.0	14.1	1.4	1	0	0	1	1	1	0	Glycine	zipper
Glug	PF07581.12	gi|55376642|ref|YP_134493.1|	-	0.37	11.3	10.5	2.9	8.5	2.3	2.7	2	0	0	2	2	2	0	The	GLUG	motif
Bacteriocin_IIc	PF10439.9	gi|55376642|ref|YP_134493.1|	-	5.2	7.3	12.9	8.5	6.6	12.9	1.3	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
COPI_C	PF06957.11	gi|55376642|ref|YP_134493.1|	-	7.1	5.3	5.6	8.4	5.0	5.6	1.0	1	0	0	1	1	1	0	Coatomer	(COPI)	alpha	subunit	C-terminus
adh_short	PF00106.25	gi|55376643|ref|YP_134494.1|	-	1e-29	103.4	0.2	4.9e-29	101.2	0.2	1.8	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|55376643|ref|YP_134494.1|	-	2.1e-18	66.7	0.4	7.7e-18	64.9	0.4	1.7	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|55376643|ref|YP_134494.1|	-	5.2e-07	29.8	0.6	8.2e-07	29.1	0.6	1.3	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|55376643|ref|YP_134494.1|	-	0.00059	19.4	0.0	0.00078	19.0	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
ADH_zinc_N	PF00107.26	gi|55376643|ref|YP_134494.1|	-	0.21	11.6	1.6	10	6.1	1.5	2.6	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
adh_short_C2	PF13561.6	gi|55376644|ref|YP_134495.1|	-	1e-43	149.6	0.2	4.6e-43	147.4	0.2	1.7	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|55376644|ref|YP_134495.1|	-	1.5e-30	106.1	0.0	1.8e-30	105.9	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|55376644|ref|YP_134495.1|	-	4.7e-05	23.4	0.0	7.5e-05	22.7	0.0	1.3	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|55376644|ref|YP_134495.1|	-	0.0016	18.4	0.2	0.0021	18.0	0.2	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
GSDH	PF07995.11	gi|55376645|ref|YP_134496.1|	-	3.3e-112	375.1	0.0	3.8e-112	374.9	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
TAT_signal	PF10518.9	gi|55376645|ref|YP_134496.1|	-	0.007	16.2	2.5	0.014	15.2	2.5	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
GTP-bdg_N	PF13167.6	gi|55376648|ref|YP_134499.1|	-	0.0095	16.6	0.0	0.032	14.9	0.0	1.9	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
PA-IIL	PF07472.11	gi|55376648|ref|YP_134499.1|	-	0.16	12.3	0.0	1.1	9.6	0.0	2.2	2	0	0	2	2	2	0	Fucose-binding	lectin	II	(PA-IIL)
RVT_3	PF13456.6	gi|55376649|ref|YP_134500.1|	-	1.9e-10	40.6	0.0	2.5e-10	40.2	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|55376649|ref|YP_134500.1|	-	1.5e-08	34.9	0.0	2.5e-08	34.2	0.0	1.4	1	0	0	1	1	1	1	RNase	H
SCP_3	PF17844.1	gi|55376649|ref|YP_134500.1|	-	0.035	13.9	0.0	0.12	12.2	0.0	1.9	1	1	1	2	2	2	0	Bacterial	SCP	ortholog
Pyr_redox_2	PF07992.14	gi|55376650|ref|YP_134501.1|	-	4.5e-28	98.3	0.1	5.8e-28	98.0	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|55376650|ref|YP_134501.1|	-	1.8e-15	57.0	0.0	2.8e-10	39.9	0.0	2.5	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|55376650|ref|YP_134501.1|	-	1.5e-05	24.8	3.4	0.012	15.3	1.8	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|55376650|ref|YP_134501.1|	-	1.6e-05	24.2	3.8	0.00032	19.9	0.8	2.6	2	1	1	3	3	3	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|55376650|ref|YP_134501.1|	-	2.1e-05	25.0	0.1	0.071	13.7	0.1	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|55376650|ref|YP_134501.1|	-	4.2e-05	23.0	0.6	6.6e-05	22.3	0.6	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|55376650|ref|YP_134501.1|	-	0.00015	20.6	0.2	0.013	14.3	0.5	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|55376650|ref|YP_134501.1|	-	0.00023	20.7	1.7	0.00047	19.6	0.6	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|55376650|ref|YP_134501.1|	-	0.00046	19.4	0.0	0.0024	17.1	0.0	1.8	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|55376650|ref|YP_134501.1|	-	0.00084	18.5	1.3	0.0014	17.8	0.7	1.6	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|55376650|ref|YP_134501.1|	-	0.0021	17.4	0.1	0.0038	16.5	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|55376650|ref|YP_134501.1|	-	0.011	15.9	0.3	0.028	14.6	0.3	1.8	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|55376650|ref|YP_134501.1|	-	0.014	15.4	0.6	0.47	10.4	0.0	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|55376650|ref|YP_134501.1|	-	0.072	12.1	0.4	0.26	10.3	0.4	1.8	1	1	1	2	2	2	0	Lycopene	cyclase	protein
NmrA	PF05368.13	gi|55376650|ref|YP_134501.1|	-	0.21	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	NmrA-like	family
RHH_8	PF17723.1	gi|55376651|ref|YP_134502.1|	-	0.028	14.6	0.1	0.31	11.2	0.0	2.0	1	1	1	2	2	2	0	Ribbon-Helix-Helix	transcriptional	regulator	family
PIN_2	PF10130.9	gi|55376651|ref|YP_134502.1|	-	0.041	14.1	0.2	0.054	13.7	0.2	1.3	1	0	0	1	1	1	0	PIN	domain
Sulfatase	PF00884.23	gi|55376652|ref|YP_134503.1|	-	2.6e-32	112.5	0.0	3.6e-32	112.0	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|55376652|ref|YP_134503.1|	-	1.4e-08	34.7	0.0	0.002	17.8	0.0	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Phosphoesterase	PF04185.14	gi|55376652|ref|YP_134503.1|	-	0.00038	19.8	0.0	0.013	14.7	0.0	2.3	2	1	0	2	2	2	1	Phosphoesterase	family
DUF229	PF02995.17	gi|55376652|ref|YP_134503.1|	-	0.0011	17.7	0.0	0.0015	17.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|55376652|ref|YP_134503.1|	-	0.0062	15.6	0.0	0.011	14.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
Usp	PF00582.26	gi|55376653|ref|YP_134504.1|	-	1.7e-27	96.6	0.7	1.9e-27	96.5	0.7	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
RC-P840_PscD	PF10657.9	gi|55376653|ref|YP_134504.1|	-	0.028	14.5	0.0	0.042	13.9	0.0	1.3	1	0	0	1	1	1	0	Photosystem	P840	reaction	centre	protein	PscD
DNA_photolyase	PF00875.18	gi|55376653|ref|YP_134504.1|	-	0.028	14.4	0.0	0.045	13.8	0.0	1.4	1	1	0	1	1	1	0	DNA	photolyase
Pyr_redox	PF00070.27	gi|55376653|ref|YP_134504.1|	-	0.034	14.7	0.2	0.26	11.9	0.1	2.3	1	1	2	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
MCPsignal	PF00015.21	gi|55376654|ref|YP_134505.1|	-	1e-38	132.9	66.5	1.3e-38	132.6	24.5	4.8	2	2	3	5	5	5	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|55376654|ref|YP_134505.1|	-	2.3e-06	27.9	0.7	2.3e-06	27.9	0.7	4.6	5	1	0	5	5	4	1	HAMP	domain
HIP1_clath_bdg	PF16515.5	gi|55376654|ref|YP_134505.1|	-	0.0071	16.9	13.4	0.0071	16.9	13.4	5.0	3	2	2	5	5	5	1	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DUF948	PF06103.11	gi|55376654|ref|YP_134505.1|	-	0.015	15.5	3.3	0.015	15.5	3.3	7.0	4	3	2	6	6	5	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF2203	PF09969.9	gi|55376654|ref|YP_134505.1|	-	0.016	15.9	2.1	0.016	15.9	2.1	5.0	2	2	1	4	4	4	0	Uncharacterized	conserved	protein	(DUF2203)
IFT57	PF10498.9	gi|55376654|ref|YP_134505.1|	-	0.018	14.0	34.1	0.2	10.6	13.5	3.9	2	1	1	3	3	3	0	Intra-flagellar	transport	protein	57
DUF1664	PF07889.12	gi|55376654|ref|YP_134505.1|	-	0.086	12.9	0.3	0.086	12.9	0.3	5.6	3	2	4	7	7	7	0	Protein	of	unknown	function	(DUF1664)
Cauli_AT	PF03233.13	gi|55376654|ref|YP_134505.1|	-	0.71	9.8	18.4	12	5.8	3.4	4.4	4	1	0	4	4	4	0	Aphid	transmission	protein
RPW8	PF05659.11	gi|55376654|ref|YP_134505.1|	-	1.4	8.6	13.5	7.9	6.2	0.0	5.1	5	1	0	5	5	5	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
SnoaL_2	PF12680.7	gi|55376654|ref|YP_134505.1|	-	1.8	9.2	5.2	1.7	9.3	0.7	2.8	2	1	0	2	2	2	0	SnoaL-like	domain
Atg14	PF10186.9	gi|55376654|ref|YP_134505.1|	-	2.3	7.2	25.4	9.1	5.3	12.0	3.9	1	1	0	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
BLOC1_2	PF10046.9	gi|55376654|ref|YP_134505.1|	-	2.6	8.4	37.1	0.63	10.4	2.6	6.1	2	2	3	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Fib_alpha	PF08702.10	gi|55376654|ref|YP_134505.1|	-	2.7	8.2	31.0	0.13	12.4	4.6	4.5	2	2	1	4	4	4	0	Fibrinogen	alpha/beta	chain	family
DUF4400	PF14348.6	gi|55376654|ref|YP_134505.1|	-	5.3	6.5	16.8	4.7	6.7	5.7	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4400)
Mod_r	PF07200.13	gi|55376654|ref|YP_134505.1|	-	5.6	7.1	33.3	2.1	8.5	0.6	4.3	2	2	2	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
Laminin_II	PF06009.12	gi|55376654|ref|YP_134505.1|	-	6.5	6.8	49.6	0.16	12.0	2.5	6.1	3	3	2	6	6	6	0	Laminin	Domain	II
COG2	PF06148.11	gi|55376654|ref|YP_134505.1|	-	7.7	6.6	39.4	16	5.5	1.8	5.8	2	2	4	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
HMA	PF00403.26	gi|55376655|ref|YP_134506.1|	-	7.4e-19	68.0	0.5	8.1e-19	67.8	0.5	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
BOFC_N	PF08977.10	gi|55376655|ref|YP_134506.1|	-	0.07	13.1	0.2	0.89	9.6	0.0	2.0	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
MTH865	PF07747.11	gi|55376656|ref|YP_134507.1|	-	2.1e-25	88.3	0.1	2.4e-25	88.1	0.1	1.0	1	0	0	1	1	1	1	MTH865-like	family
Apo-VLDL-II	PF05418.11	gi|55376657|ref|YP_134508.1|	-	0.083	13.5	0.0	0.09	13.4	0.0	1.1	1	0	0	1	1	1	0	Apovitellenin	I	(Apo-VLDL-II)
ANTH	PF07651.16	gi|55376657|ref|YP_134508.1|	-	0.13	11.2	0.1	0.14	11.1	0.1	1.0	1	0	0	1	1	1	0	ANTH	domain
PQQ_2	PF13360.6	gi|55376658|ref|YP_134509.1|	-	4.1e-30	105.1	20.1	4e-17	62.6	5.5	3.1	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|55376658|ref|YP_134509.1|	-	3.1e-13	49.8	41.6	0.0047	17.4	1.6	7.7	7	1	1	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|55376658|ref|YP_134509.1|	-	2.7e-05	23.9	8.6	8.7	6.5	0.1	6.8	6	0	0	6	6	6	2	PQQ	enzyme	repeat
CytB6-F_Fe-S	PF08802.10	gi|55376658|ref|YP_134509.1|	-	0.1	12.7	0.1	0.39	10.8	0.1	2.1	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	Fe-S	subunit
TAT_signal	PF10518.9	gi|55376658|ref|YP_134509.1|	-	4	7.4	10.8	0.86	9.6	1.5	3.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Bax1-I	PF01027.20	gi|55376659|ref|YP_134510.1|	-	0.13	12.0	8.4	0.17	11.7	8.4	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
DUF2273	PF10031.9	gi|55376660|ref|YP_134511.1|	-	0.032	14.2	1.2	0.032	14.2	1.2	3.2	3	0	0	3	3	3	0	Small	integral	membrane	protein	(DUF2273)
DUF393	PF04134.12	gi|55376661|ref|YP_134512.1|	-	1.2e-06	29.8	0.0	1.8e-06	29.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
Thioredoxin_2	PF13098.6	gi|55376661|ref|YP_134512.1|	-	0.13	12.7	0.0	0.22	12.0	0.0	1.5	1	1	0	1	1	1	0	Thioredoxin-like	domain
MarR_2	PF12802.7	gi|55376662|ref|YP_134513.1|	-	0.0022	17.9	0.1	0.0028	17.5	0.1	1.2	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|55376662|ref|YP_134513.1|	-	0.012	16.0	0.0	0.013	15.8	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|55376662|ref|YP_134513.1|	-	0.031	14.5	0.0	0.037	14.2	0.0	1.1	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|55376662|ref|YP_134513.1|	-	0.19	11.6	0.0	0.27	11.2	0.0	1.3	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Pyridox_ox_2	PF12900.7	gi|55376663|ref|YP_134514.1|	-	9.2e-18	64.6	0.0	1e-17	64.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|55376663|ref|YP_134514.1|	-	0.079	13.2	0.0	0.23	11.7	0.0	1.8	1	1	1	2	2	2	0	Pyridoxamine	5'-phosphate	oxidase
Creatininase	PF02633.14	gi|55376664|ref|YP_134515.1|	-	1e-65	221.6	0.8	1.2e-65	221.3	0.8	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Gaa1	PF04114.14	gi|55376665|ref|YP_134516.1|	-	0.21	10.6	1.4	0.29	10.1	0.4	1.6	2	0	0	2	2	2	0	Gaa1-like,	GPI	transamidase	component
CDP-OH_P_transf	PF01066.21	gi|55376666|ref|YP_134517.1|	-	3.2e-06	27.8	0.5	3.2e-06	27.8	0.5	2.3	3	0	0	3	3	3	1	CDP-alcohol	phosphatidyltransferase
Aldo_ket_red	PF00248.21	gi|55376668|ref|YP_134519.1|	-	6.9e-41	140.4	0.0	7.5e-39	133.7	0.0	2.3	1	1	0	1	1	1	1	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.22	gi|55376668|ref|YP_134519.1|	-	6.1e-15	56.1	0.3	6.3e-14	52.8	0.1	2.5	3	0	0	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.16	gi|55376668|ref|YP_134519.1|	-	1.1e-07	32.5	1.2	2.8e-07	31.2	1.2	1.7	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|55376668|ref|YP_134519.1|	-	0.019	15.2	0.1	1	9.6	0.2	3.1	3	1	0	3	3	3	0	Saccharopine	dehydrogenase	NADP	binding	domain
GFO_IDH_MocA_C	PF02894.17	gi|55376668|ref|YP_134519.1|	-	0.077	13.0	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Sulfatase	PF00884.23	gi|55376669|ref|YP_134520.1|	-	0.0042	16.5	0.0	0.0064	15.9	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|55376669|ref|YP_134520.1|	-	0.049	13.7	0.0	0.086	12.9	0.0	1.3	1	0	0	1	1	1	0	PglZ	domain
ADH_zinc_N	PF00107.26	gi|55376670|ref|YP_134521.1|	-	4.1e-06	26.8	0.0	1.1e-05	25.4	0.0	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|55376670|ref|YP_134521.1|	-	6e-05	22.6	0.0	0.00012	21.6	0.0	1.5	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|55376670|ref|YP_134521.1|	-	0.022	15.8	0.0	0.044	14.8	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|55376670|ref|YP_134521.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	Alcohol	dehydrogenase	GroES-like	domain
PTPS	PF01242.19	gi|55376671|ref|YP_134522.1|	-	9.5e-09	35.3	0.2	1e-08	35.2	0.2	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
Glycos_transf_1	PF00534.20	gi|55376672|ref|YP_134523.1|	-	1.7e-33	115.6	0.0	2.5e-33	115.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376672|ref|YP_134523.1|	-	1.2e-24	87.3	0.1	1.8e-24	86.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|55376672|ref|YP_134523.1|	-	2.9e-10	40.4	2.1	1.3e-09	38.3	0.4	2.3	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|55376672|ref|YP_134523.1|	-	1.5e-09	38.1	0.0	3.1e-09	37.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|55376672|ref|YP_134523.1|	-	3.4e-08	34.1	3.4	3.4e-08	34.1	3.4	2.5	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Phage_T7_Capsid	PF05396.11	gi|55376672|ref|YP_134523.1|	-	0.09	13.1	0.0	0.18	12.2	0.0	1.4	1	0	0	1	1	1	0	Phage	T7	capsid	assembly	protein
Transcrip_reg	PF01709.20	gi|55376672|ref|YP_134523.1|	-	0.13	11.6	0.0	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Methyltransf_25	PF13649.6	gi|55376673|ref|YP_134524.1|	-	3.3e-05	24.5	0.0	0.0019	18.9	0.0	2.7	2	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|55376673|ref|YP_134524.1|	-	0.00035	20.4	0.0	0.00051	19.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|55376673|ref|YP_134524.1|	-	0.0021	18.8	0.0	0.013	16.2	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
MaoC_dehydratas	PF01575.19	gi|55376674|ref|YP_134525.1|	-	3.7e-17	62.0	0.0	4.7e-17	61.7	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|55376674|ref|YP_134525.1|	-	1.3e-08	35.0	0.0	3.3e-08	33.7	0.0	1.6	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
COE1_HLH	PF16423.5	gi|55376674|ref|YP_134525.1|	-	0.085	12.6	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	Transcription	factor	COE1	helix-loop-helix	domain
FUR	PF01475.19	gi|55376675|ref|YP_134526.1|	-	0.063	13.4	0.0	0.063	13.4	0.0	1.0	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
FixG_C	PF11614.8	gi|55376676|ref|YP_134527.1|	-	0.041	14.1	0.0	0.054	13.7	0.0	1.1	1	0	0	1	1	1	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
TOM6p	PF15184.6	gi|55376677|ref|YP_134528.1|	-	0.0039	16.9	0.0	0.0089	15.8	0.0	1.6	1	0	0	1	1	1	1	Mitochondrial	import	receptor	subunit	TOM6	homolog
KCT2	PF17818.1	gi|55376677|ref|YP_134528.1|	-	8.5	6.5	7.5	7.7	6.6	6.4	1.5	1	1	0	1	1	1	0	Keratinocyte-associated	gene	product
MreB_Mbl	PF06723.13	gi|55376678|ref|YP_134529.1|	-	3.3e-06	26.1	0.0	0.011	14.6	0.0	2.2	2	0	0	2	2	2	2	MreB/Mbl	protein
FtsA	PF14450.6	gi|55376678|ref|YP_134529.1|	-	0.012	16.0	0.0	0.033	14.6	0.0	1.7	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Actin	PF00022.19	gi|55376678|ref|YP_134529.1|	-	0.16	10.6	0.0	1.3	7.6	0.0	2.2	2	1	0	2	2	2	0	Actin
Glyco_transf_52	PF07922.11	gi|55376678|ref|YP_134529.1|	-	0.17	11.1	0.1	0.27	10.5	0.1	1.2	1	0	0	1	1	1	0	Glycosyltransferase	family	52
TF_Zn_Ribbon	PF08271.12	gi|55376679|ref|YP_134530.1|	-	0.031	13.8	1.4	0.091	12.3	1.4	1.8	1	0	0	1	1	1	0	TFIIB	zinc-binding
DUF2387	PF09526.10	gi|55376679|ref|YP_134530.1|	-	0.031	14.4	0.1	0.075	13.2	0.1	1.7	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|55376679|ref|YP_134530.1|	-	0.048	13.6	0.1	0.081	12.9	0.1	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-TFIIB	PF13453.6	gi|55376679|ref|YP_134530.1|	-	0.074	12.4	1.3	0.14	11.5	1.3	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
UPF0547	PF10571.9	gi|55376679|ref|YP_134530.1|	-	0.14	12.3	0.4	9	6.5	0.0	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.6	gi|55376679|ref|YP_134530.1|	-	0.15	12.0	0.5	0.36	10.8	0.5	1.6	1	0	0	1	1	1	0	Nudix	N-terminal
Lipase_chap	PF03280.14	gi|55376680|ref|YP_134531.1|	-	0.078	12.9	0.1	0.11	12.4	0.1	1.3	1	0	0	1	1	1	0	Proteobacterial	lipase	chaperone	protein
DZR	PF12773.7	gi|55376681|ref|YP_134532.1|	-	0.06	13.4	1.2	1.2	9.2	0.2	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
Utp14	PF04615.13	gi|55376681|ref|YP_134532.1|	-	0.067	11.8	9.3	0.083	11.5	9.3	1.0	1	0	0	1	1	1	0	Utp14	protein
DUF2387	PF09526.10	gi|55376681|ref|YP_134532.1|	-	0.18	11.9	4.7	5.2	7.3	0.2	3.4	3	0	0	3	3	3	0	Probable	metal-binding	protein	(DUF2387)
zf_UBZ	PF18439.1	gi|55376681|ref|YP_134532.1|	-	0.22	11.2	6.0	1.1	8.9	0.1	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
HypA	PF01155.19	gi|55376681|ref|YP_134532.1|	-	0.23	11.5	1.0	1.5	8.9	0.2	2.1	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1660	PF07874.11	gi|55376681|ref|YP_134532.1|	-	0.23	12.0	4.5	1.3	9.6	0.8	3.1	2	1	0	2	2	2	0	Prophage	protein	(DUF1660)
DUF2367	PF10164.9	gi|55376681|ref|YP_134532.1|	-	0.38	11.3	2.7	0.68	10.5	0.0	2.6	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2367)
zinc_ribbon_9	PF14369.6	gi|55376681|ref|YP_134532.1|	-	1.4	9.3	7.7	1.1	9.5	0.1	3.1	3	0	0	3	3	3	0	zinc-ribbon
zinc_ribbon_2	PF13240.6	gi|55376681|ref|YP_134532.1|	-	1.4	8.7	6.6	1.9	8.3	1.8	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|55376681|ref|YP_134532.1|	-	2.1	8.4	4.6	79	3.3	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|55376681|ref|YP_134532.1|	-	2.1	8.5	10.6	0.81	9.8	1.2	2.9	3	0	0	3	3	2	0	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|55376681|ref|YP_134532.1|	-	3.6	7.8	13.8	1.5	9.0	0.4	3.3	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zf-FPG_IleRS	PF06827.14	gi|55376681|ref|YP_134532.1|	-	5.4	7.0	8.6	63	3.6	0.2	3.5	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
HhH-GPD	PF00730.25	gi|55376682|ref|YP_134533.1|	-	1.9e-15	57.2	0.0	2.7e-15	56.8	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|55376682|ref|YP_134533.1|	-	0.00012	21.7	0.0	0.00069	19.4	0.0	2.3	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|55376682|ref|YP_134533.1|	-	0.00013	22.5	0.2	0.32	11.6	0.0	2.4	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|55376682|ref|YP_134533.1|	-	0.05	13.7	0.1	6.8	6.9	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
DUF2400	PF09674.10	gi|55376682|ref|YP_134533.1|	-	0.058	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2400)
HHH_8	PF14716.6	gi|55376682|ref|YP_134533.1|	-	0.14	12.6	0.2	1.1	9.7	0.1	2.4	2	1	0	2	2	2	0	Helix-hairpin-helix	domain
SNF	PF00209.18	gi|55376683|ref|YP_134534.1|	-	3.3e-47	161.4	31.7	7e-27	94.3	15.9	2.1	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
ABC_tran	PF00005.27	gi|55376684|ref|YP_134535.1|	-	9.8e-35	120.0	0.0	1.6e-34	119.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|55376684|ref|YP_134535.1|	-	1.8e-07	31.2	0.3	0.0075	16.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|55376684|ref|YP_134535.1|	-	0.0021	17.7	0.0	0.004	16.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|55376684|ref|YP_134535.1|	-	0.0052	17.2	0.0	0.007	16.8	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|55376684|ref|YP_134535.1|	-	0.0065	15.7	0.1	0.014	14.6	0.0	1.5	2	0	0	2	2	2	1	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|55376684|ref|YP_134535.1|	-	0.0099	15.8	0.0	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
NTPase_1	PF03266.15	gi|55376684|ref|YP_134535.1|	-	0.018	14.9	0.7	0.049	13.5	0.1	2.0	2	1	1	3	3	3	0	NTPase
AAA_22	PF13401.6	gi|55376684|ref|YP_134535.1|	-	0.019	15.2	0.4	0.054	13.8	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|55376684|ref|YP_134535.1|	-	0.026	14.4	0.3	0.05	13.5	0.3	1.4	1	0	0	1	1	1	0	NACHT	domain
Mg_chelatase	PF01078.21	gi|55376684|ref|YP_134535.1|	-	0.035	13.5	0.2	3	7.2	0.1	2.1	1	1	1	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.14	gi|55376684|ref|YP_134535.1|	-	0.049	13.5	0.1	0.082	12.8	0.1	1.3	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DLIC	PF05783.11	gi|55376684|ref|YP_134535.1|	-	0.062	12.1	0.0	0.085	11.7	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA	PF00004.29	gi|55376684|ref|YP_134535.1|	-	0.092	13.2	0.2	0.15	12.5	0.2	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|55376684|ref|YP_134535.1|	-	0.093	12.6	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_14	PF13173.6	gi|55376684|ref|YP_134535.1|	-	0.13	12.3	0.0	0.31	11.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|55376684|ref|YP_134535.1|	-	0.15	11.8	0.6	0.31	10.7	0.4	1.5	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|55376684|ref|YP_134535.1|	-	0.16	11.4	0.5	0.84	9.0	0.5	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|55376684|ref|YP_134535.1|	-	0.17	11.5	1.6	0.17	11.6	0.4	1.8	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|55376685|ref|YP_134536.1|	-	2.5e-31	109.0	0.0	3.7e-31	108.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|55376685|ref|YP_134536.1|	-	6.6e-09	36.0	3.2	0.0012	18.7	0.6	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|55376685|ref|YP_134536.1|	-	1.5e-07	31.1	0.3	2.5e-05	23.8	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|55376685|ref|YP_134536.1|	-	2e-05	25.2	0.0	3.1e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|55376685|ref|YP_134536.1|	-	9.9e-05	22.0	0.0	0.00016	21.3	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|55376685|ref|YP_134536.1|	-	0.00032	20.6	0.0	0.00059	19.8	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|55376685|ref|YP_134536.1|	-	0.00051	19.7	0.0	0.00087	19.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|55376685|ref|YP_134536.1|	-	0.0014	18.9	0.1	0.0046	17.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|55376685|ref|YP_134536.1|	-	0.0022	17.8	0.0	0.0045	16.7	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
BCA_ABC_TP_C	PF12399.8	gi|55376685|ref|YP_134536.1|	-	0.0035	17.2	0.2	0.0088	15.9	0.2	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_16	PF13191.6	gi|55376685|ref|YP_134536.1|	-	0.0049	17.3	0.2	0.0091	16.4	0.2	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|55376685|ref|YP_134536.1|	-	0.006	16.3	0.0	0.0082	15.9	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|55376685|ref|YP_134536.1|	-	0.011	15.8	0.0	0.037	14.1	0.0	1.8	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|55376685|ref|YP_134536.1|	-	0.016	14.8	0.0	0.024	14.2	0.0	1.2	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_28	PF13521.6	gi|55376685|ref|YP_134536.1|	-	0.057	13.7	2.2	2.4	8.4	0.1	2.6	2	1	0	2	2	2	0	AAA	domain
DnaB_C	PF03796.15	gi|55376685|ref|YP_134536.1|	-	0.14	11.5	0.0	0.48	9.7	0.0	1.8	1	1	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
BPD_transp_2	PF02653.16	gi|55376686|ref|YP_134537.1|	-	1.7e-35	122.5	38.2	3.4e-35	121.5	38.2	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Cupin_6	PF12852.7	gi|55376686|ref|YP_134537.1|	-	0.12	12.1	0.3	0.19	11.4	0.3	1.3	1	0	0	1	1	1	0	Cupin
BPD_transp_2	PF02653.16	gi|55376687|ref|YP_134538.1|	-	1.3e-34	119.6	39.7	2.2e-34	118.9	39.7	1.3	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
SieB	PF14163.6	gi|55376687|ref|YP_134538.1|	-	0.11	11.9	0.0	0.27	10.7	0.0	1.7	1	0	0	1	1	1	0	Super-infection	exclusion	protein	B
Peripla_BP_6	PF13458.6	gi|55376688|ref|YP_134539.1|	-	2.8e-68	231.1	0.9	3.4e-68	230.8	0.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|55376688|ref|YP_134539.1|	-	1.3e-66	225.0	0.1	1.7e-66	224.7	0.1	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|55376688|ref|YP_134539.1|	-	0.0047	16.7	4.1	0.0093	15.8	4.1	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Urease_beta	PF00699.20	gi|55376689|ref|YP_134540.1|	-	1.1e-44	150.4	0.2	1.4e-44	150.1	0.2	1.1	1	0	0	1	1	1	1	Urease	beta	subunit
Amidohydro_1	PF01979.20	gi|55376690|ref|YP_134541.1|	-	3.3e-63	214.1	0.2	4.4e-63	213.7	0.2	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|55376690|ref|YP_134541.1|	-	1.7e-49	167.1	2.7	1.9e-49	167.0	1.4	1.7	2	0	0	2	2	2	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_3	PF07969.11	gi|55376690|ref|YP_134541.1|	-	4.6e-10	39.6	2.3	7.2e-07	29.0	0.1	2.7	1	1	0	2	2	2	2	Amidohydrolase	family
Urease_gamma	PF00547.18	gi|55376691|ref|YP_134542.1|	-	4.7e-42	142.3	0.0	5.5e-42	142.1	0.0	1.1	1	0	0	1	1	1	1	Urease,	gamma	subunit
cobW	PF02492.19	gi|55376692|ref|YP_134543.1|	-	9e-32	110.1	0.0	1.1e-31	109.8	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.14	gi|55376692|ref|YP_134543.1|	-	6.7e-09	35.7	0.0	1.1e-08	35.0	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MeaB	PF03308.16	gi|55376692|ref|YP_134543.1|	-	4.1e-07	29.2	1.1	1.8e-06	27.2	1.1	1.8	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ABC_tran	PF00005.27	gi|55376692|ref|YP_134543.1|	-	0.0021	18.6	0.0	0.0031	18.0	0.0	1.4	2	0	0	2	2	2	1	ABC	transporter
RsgA_GTPase	PF03193.16	gi|55376692|ref|YP_134543.1|	-	0.0044	16.9	0.0	1.6	8.6	0.0	2.5	3	0	0	3	3	3	1	RsgA	GTPase
AAA_18	PF13238.6	gi|55376692|ref|YP_134543.1|	-	0.013	16.0	0.0	0.02	15.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|55376692|ref|YP_134543.1|	-	0.015	15.0	0.0	0.019	14.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|55376692|ref|YP_134543.1|	-	0.044	13.7	0.0	0.072	13.0	0.0	1.3	1	0	0	1	1	1	0	NTPase
LpxK	PF02606.14	gi|55376692|ref|YP_134543.1|	-	0.052	12.6	0.1	0.091	11.8	0.1	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_26	PF13500.6	gi|55376692|ref|YP_134543.1|	-	0.083	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|55376692|ref|YP_134543.1|	-	0.11	12.9	0.0	0.14	12.6	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.9	gi|55376692|ref|YP_134543.1|	-	0.11	11.3	0.0	0.15	10.9	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
SRP54	PF00448.22	gi|55376692|ref|YP_134543.1|	-	0.15	11.7	0.0	0.34	10.5	0.0	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
GTP_EFTU	PF00009.27	gi|55376692|ref|YP_134543.1|	-	0.17	11.4	0.2	6.8	6.2	0.0	2.4	2	1	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
KAP_NTPase	PF07693.14	gi|55376692|ref|YP_134543.1|	-	0.19	10.9	0.0	0.19	10.9	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
NACHT	PF05729.12	gi|55376692|ref|YP_134543.1|	-	0.19	11.6	0.1	0.31	11.0	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
UreD	PF01774.17	gi|55376693|ref|YP_134544.1|	-	3.2e-46	157.9	0.5	3.9e-46	157.7	0.5	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
UreE_N	PF02814.15	gi|55376694|ref|YP_134545.1|	-	4.2e-13	48.7	2.8	4.2e-13	48.7	1.1	1.9	2	0	0	2	2	2	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.12	gi|55376694|ref|YP_134545.1|	-	7.1e-06	26.4	1.9	1.3e-05	25.6	1.9	1.5	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
UreF	PF01730.16	gi|55376695|ref|YP_134546.1|	-	8.4e-29	100.8	4.8	1.2e-28	100.4	4.8	1.2	1	0	0	1	1	1	1	UreF
Methyltransf_11	PF08241.12	gi|55376696|ref|YP_134547.1|	-	1.9e-19	70.1	0.0	3.1e-19	69.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|55376696|ref|YP_134547.1|	-	2e-17	63.7	0.0	4.8e-17	62.4	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|55376696|ref|YP_134547.1|	-	2.7e-09	37.0	0.0	8.8e-09	35.3	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|55376696|ref|YP_134547.1|	-	1.6e-07	30.9	0.0	2.1e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|55376696|ref|YP_134547.1|	-	6.6e-06	26.8	0.0	1.2e-05	25.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
DREV	PF05219.12	gi|55376696|ref|YP_134547.1|	-	8.6e-06	25.0	0.0	1e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_23	PF13489.6	gi|55376696|ref|YP_134547.1|	-	1.9e-05	24.5	0.0	2.9e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|55376696|ref|YP_134547.1|	-	0.0022	17.9	0.0	0.0041	17.0	0.0	1.6	1	1	0	1	1	1	1	Hypothetical	methyltransferase
FtsJ	PF01728.19	gi|55376696|ref|YP_134547.1|	-	0.0036	17.4	0.0	0.0094	16.1	0.0	1.8	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
RrnaAD	PF00398.20	gi|55376696|ref|YP_134547.1|	-	0.064	12.3	0.0	0.078	12.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_29	PF03141.16	gi|55376696|ref|YP_134547.1|	-	0.066	11.8	0.0	0.18	10.3	0.0	1.6	1	1	0	2	2	2	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
DUF302	PF03625.14	gi|55376697|ref|YP_134548.1|	-	4.3e-14	52.1	0.0	7e-14	51.5	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
TM_helix	PF05552.12	gi|55376698|ref|YP_134549.1|	-	0.019	14.9	0.9	0.047	13.7	0.1	2.1	2	0	0	2	2	2	0	Conserved	TM	helix
TrmB	PF01978.19	gi|55376699|ref|YP_134550.1|	-	1.6e-17	63.1	0.0	2.2e-17	62.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|55376699|ref|YP_134550.1|	-	2.2e-07	30.6	0.0	4.5e-07	29.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|55376699|ref|YP_134550.1|	-	3.8e-06	26.7	0.0	8.1e-06	25.7	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|55376699|ref|YP_134550.1|	-	7.7e-06	25.8	0.0	1.4e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.16	gi|55376699|ref|YP_134550.1|	-	0.00011	22.5	0.0	0.00016	22.0	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|55376699|ref|YP_134550.1|	-	0.00018	21.3	0.0	0.00056	19.7	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|55376699|ref|YP_134550.1|	-	0.00036	20.5	0.1	0.00083	19.4	0.1	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
RuvB_C	PF05491.13	gi|55376699|ref|YP_134550.1|	-	0.0016	18.3	0.0	0.0031	17.4	0.0	1.4	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
HTH_24	PF13412.6	gi|55376699|ref|YP_134550.1|	-	0.0018	17.8	0.0	0.003	17.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
UMPH-1	PF05822.12	gi|55376699|ref|YP_134550.1|	-	0.0029	17.2	0.1	0.0047	16.5	0.1	1.3	1	1	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_Crp_2	PF13545.6	gi|55376699|ref|YP_134550.1|	-	0.026	14.5	0.0	0.051	13.6	0.0	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|55376699|ref|YP_134550.1|	-	0.026	14.1	0.2	0.057	13.1	0.1	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_29	PF13551.6	gi|55376699|ref|YP_134550.1|	-	0.039	14.0	0.0	0.074	13.1	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn	helix
DUF4423	PF14394.6	gi|55376699|ref|YP_134550.1|	-	0.04	13.6	0.0	0.11	12.2	0.0	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_23	PF13384.6	gi|55376699|ref|YP_134550.1|	-	0.047	13.5	0.0	0.12	12.2	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
SMC_ScpB	PF04079.16	gi|55376699|ref|YP_134550.1|	-	0.07	12.7	0.3	1.8	8.1	0.0	2.4	1	1	1	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_27	PF13463.6	gi|55376699|ref|YP_134550.1|	-	0.15	12.5	0.0	0.25	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Dimerisation	PF08100.11	gi|55376699|ref|YP_134550.1|	-	0.16	12.0	0.0	0.46	10.6	0.0	1.7	2	0	0	2	2	2	0	Dimerisation	domain
Rrf2	PF02082.20	gi|55376699|ref|YP_134550.1|	-	0.2	12.0	0.0	0.43	11.0	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
Thioredoxin	PF00085.20	gi|55376700|ref|YP_134551.1|	-	7.9e-27	93.3	0.0	9.6e-27	93.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|55376700|ref|YP_134551.1|	-	7.5e-10	39.2	0.1	1.3e-08	35.3	0.1	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|55376700|ref|YP_134551.1|	-	3e-06	27.2	0.7	4.9e-06	26.5	0.2	1.5	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
TraF	PF13728.6	gi|55376700|ref|YP_134551.1|	-	3.3e-06	27.1	0.0	3.9e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|55376700|ref|YP_134551.1|	-	2.2e-05	24.4	0.0	3.4e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|55376700|ref|YP_134551.1|	-	4.9e-05	23.1	0.0	5.9e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.6	gi|55376700|ref|YP_134551.1|	-	0.00014	22.1	0.0	0.35	11.2	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_7	PF13899.6	gi|55376700|ref|YP_134551.1|	-	0.00032	20.8	0.0	0.00051	20.2	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
HyaE	PF07449.11	gi|55376700|ref|YP_134551.1|	-	0.00039	20.4	0.1	0.0008	19.4	0.0	1.5	2	0	0	2	2	2	1	Hydrogenase-1	expression	protein	HyaE
OST3_OST6	PF04756.13	gi|55376700|ref|YP_134551.1|	-	0.0011	18.4	0.0	0.0014	18.1	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
DUF836	PF05768.14	gi|55376700|ref|YP_134551.1|	-	0.0046	17.3	0.0	0.0063	16.9	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.6	gi|55376700|ref|YP_134551.1|	-	0.0065	16.2	0.0	0.01	15.5	0.0	1.4	1	1	0	1	1	1	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|55376700|ref|YP_134551.1|	-	0.013	15.7	0.0	0.02	15.1	0.0	1.3	1	0	0	1	1	1	0	Glutaredoxin
Thioredoxin_4	PF13462.6	gi|55376700|ref|YP_134551.1|	-	0.067	13.3	0.0	0.071	13.3	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin
Phosducin	PF02114.16	gi|55376700|ref|YP_134551.1|	-	0.1	11.5	0.0	0.12	11.3	0.0	1.0	1	0	0	1	1	1	0	Phosducin
DUF953	PF06110.11	gi|55376700|ref|YP_134551.1|	-	0.2	11.3	0.2	1.7	8.3	0.2	2.0	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
Pyr_redox_2	PF07992.14	gi|55376701|ref|YP_134552.1|	-	5e-56	190.1	0.5	6.2e-56	189.8	0.5	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|55376701|ref|YP_134552.1|	-	2.5e-24	85.7	1.2	6.1e-19	68.4	0.2	3.3	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|55376701|ref|YP_134552.1|	-	2.3e-13	50.3	0.0	3.2e-12	46.7	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|55376701|ref|YP_134552.1|	-	8.4e-08	31.8	0.0	0.012	14.8	0.0	2.5	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|55376701|ref|YP_134552.1|	-	4.3e-06	26.9	1.0	0.011	16.0	0.1	2.9	3	0	0	3	3	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|55376701|ref|YP_134552.1|	-	5.2e-06	25.4	0.2	0.082	11.6	0.0	3.5	3	1	0	3	3	3	2	HI0933-like	protein
TrkA_N	PF02254.18	gi|55376701|ref|YP_134552.1|	-	0.00049	20.3	1.7	11	6.4	0.1	4.2	4	0	0	4	4	4	1	TrkA-N	domain
Amino_oxidase	PF01593.24	gi|55376701|ref|YP_134552.1|	-	0.001	18.4	0.1	1.5	8.0	0.0	3.0	3	0	0	3	3	3	1	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.17	gi|55376701|ref|YP_134552.1|	-	0.008	15.4	0.2	0.097	11.9	0.0	2.8	4	0	0	4	4	4	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|55376701|ref|YP_134552.1|	-	0.012	14.6	0.1	1.3	8.0	0.0	2.9	3	0	0	3	3	3	0	Lycopene	cyclase	protein
3HCDH_N	PF02737.18	gi|55376701|ref|YP_134552.1|	-	0.019	14.9	0.1	0.034	14.0	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.24	gi|55376701|ref|YP_134552.1|	-	0.038	13.1	9.2	0.27	10.3	4.7	3.6	2	1	0	2	2	2	0	FAD	binding	domain
GIDA	PF01134.22	gi|55376701|ref|YP_134552.1|	-	0.048	12.8	0.2	2.8	6.9	0.1	2.2	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
UDPG_MGDP_dh_N	PF03721.14	gi|55376701|ref|YP_134552.1|	-	0.079	12.5	0.2	3.9	7.0	0.1	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
E1-E2_ATPase	PF00122.20	gi|55376702|ref|YP_134553.1|	-	5.2e-55	185.8	3.5	5.2e-55	185.8	3.5	2.4	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|55376702|ref|YP_134553.1|	-	1.4e-35	122.7	2.0	1.4e-35	122.7	2.0	2.0	3	0	0	3	3	3	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|55376702|ref|YP_134553.1|	-	8.2e-28	98.1	4.2	1.9e-27	96.9	4.2	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|55376702|ref|YP_134553.1|	-	8.1e-20	70.7	0.0	5e-19	68.2	0.0	2.1	2	0	0	2	2	2	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|55376702|ref|YP_134553.1|	-	2.2e-14	52.9	0.0	4.4e-14	51.9	0.0	1.5	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|55376702|ref|YP_134553.1|	-	1.3e-05	25.0	0.5	9.2e-05	22.3	0.6	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|55376702|ref|YP_134553.1|	-	0.00032	21.2	0.3	0.00063	20.2	0.3	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Pyridox_ox_2	PF12900.7	gi|55376703|ref|YP_134554.1|	-	1.3e-17	64.1	0.0	1.5e-17	63.9	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|55376703|ref|YP_134554.1|	-	0.00019	21.6	0.0	0.00023	21.3	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.26	gi|55376704|ref|YP_134555.1|	-	1.5e-68	229.7	2.6	9.9e-34	116.9	0.1	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF2267	PF10025.9	gi|55376705|ref|YP_134556.1|	-	2.2e-36	124.8	0.3	2.6e-36	124.6	0.3	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Pyridox_ox_2	PF12900.7	gi|55376706|ref|YP_134557.1|	-	2.3e-18	66.5	0.0	2.6e-18	66.4	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|55376706|ref|YP_134557.1|	-	0.033	14.4	0.0	0.045	14.0	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
Usp	PF00582.26	gi|55376707|ref|YP_134558.1|	-	3.4e-31	108.6	2.7	3.8e-31	108.5	2.7	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|55376707|ref|YP_134558.1|	-	0.0043	17.1	0.0	0.0059	16.6	0.0	1.1	1	0	0	1	1	1	1	DNA	photolyase
7TMR-DISM_7TM	PF07695.11	gi|55376708|ref|YP_134559.1|	-	0.07	13.0	7.1	0.081	12.8	7.1	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
CitMHS	PF03600.16	gi|55376708|ref|YP_134559.1|	-	0.37	9.9	5.5	0.42	9.7	5.5	1.1	1	0	0	1	1	1	0	Citrate	transporter
NosL	PF05573.12	gi|55376709|ref|YP_134560.1|	-	4.3e-44	150.0	0.0	5.4e-44	149.7	0.0	1.1	1	0	0	1	1	1	1	NosL
VATC	PF18716.1	gi|55376709|ref|YP_134560.1|	-	0.01	15.7	3.5	0.097	12.5	1.4	2.3	2	0	0	2	2	2	0	Vms1-associating	treble	clef	domain
RRM_1	PF00076.22	gi|55376709|ref|YP_134560.1|	-	0.093	12.6	0.0	0.15	11.9	0.0	1.3	1	0	0	1	1	1	0	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
HTH_20	PF12840.7	gi|55376710|ref|YP_134561.1|	-	1.1e-14	54.2	3.1	1.9e-08	34.3	1.6	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|55376710|ref|YP_134561.1|	-	8.1e-13	47.7	0.1	9.3e-08	31.5	0.1	3.3	4	0	0	4	4	4	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|55376710|ref|YP_134561.1|	-	4.1e-10	39.4	0.2	1.8e-05	24.5	0.1	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|55376710|ref|YP_134561.1|	-	1.3e-07	31.4	5.4	3.2e-05	23.7	1.1	3.2	3	2	0	3	3	3	2	MarR	family
HTH_11	PF08279.12	gi|55376710|ref|YP_134561.1|	-	1e-06	28.5	0.1	1.3e-05	25.1	0.1	2.1	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|55376710|ref|YP_134561.1|	-	1.1e-06	28.5	0.0	0.0008	19.3	0.0	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|55376710|ref|YP_134561.1|	-	2.5e-06	27.2	0.1	0.068	13.0	0.0	2.8	2	0	0	2	2	2	2	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|55376710|ref|YP_134561.1|	-	2.1e-05	24.4	0.5	6.5e-05	22.8	0.2	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|55376710|ref|YP_134561.1|	-	0.00012	22.4	0.1	0.0076	16.6	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
MarR	PF01047.22	gi|55376710|ref|YP_134561.1|	-	0.00031	20.6	0.0	0.0028	17.5	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|55376710|ref|YP_134561.1|	-	0.00043	20.0	0.8	0.0058	16.4	0.9	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|55376710|ref|YP_134561.1|	-	0.00058	19.6	0.4	0.0052	16.6	0.3	2.4	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_34	PF13601.6	gi|55376710|ref|YP_134561.1|	-	0.0013	18.9	0.0	1.6	9.0	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
Phage_CI_repr	PF07022.13	gi|55376710|ref|YP_134561.1|	-	0.0023	18.0	0.1	0.01	15.9	0.0	2.0	2	0	0	2	2	2	1	Bacteriophage	CI	repressor	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|55376710|ref|YP_134561.1|	-	0.0033	17.6	0.0	0.26	11.5	0.0	2.5	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_17	PF12728.7	gi|55376710|ref|YP_134561.1|	-	0.0045	17.2	0.4	0.46	10.7	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|55376710|ref|YP_134561.1|	-	0.0048	16.6	0.4	0.028	14.2	0.2	2.3	2	1	0	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.6	gi|55376710|ref|YP_134561.1|	-	0.006	16.3	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
FaeA	PF04703.12	gi|55376710|ref|YP_134561.1|	-	0.0068	16.7	0.1	1.7	9.0	0.0	2.2	2	0	0	2	2	2	1	FaeA-like	protein
HTH_CodY	PF08222.11	gi|55376710|ref|YP_134561.1|	-	0.0097	15.4	0.0	0.061	12.9	0.0	2.0	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
HTH_3	PF01381.22	gi|55376710|ref|YP_134561.1|	-	0.016	15.3	0.0	0.031	14.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
RP-C	PF03428.13	gi|55376710|ref|YP_134561.1|	-	0.027	14.1	0.1	1.4	8.5	0.0	2.4	2	0	0	2	2	2	0	Replication	protein	C	N-terminal	domain
DprA_WH	PF17782.1	gi|55376710|ref|YP_134561.1|	-	0.027	14.6	6.1	0.13	12.4	1.1	3.2	3	1	0	3	3	3	0	DprA	winged	helix	domain
AbiEi_4	PF13338.6	gi|55376710|ref|YP_134561.1|	-	0.03	14.5	0.3	4.8	7.4	0.0	2.8	3	0	0	3	3	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_DeoR	PF08220.12	gi|55376710|ref|YP_134561.1|	-	0.045	13.5	0.0	0.16	11.7	0.0	1.8	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_37	PF13744.6	gi|55376710|ref|YP_134561.1|	-	0.046	13.7	0.0	0.13	12.2	0.0	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|55376710|ref|YP_134561.1|	-	0.053	13.0	0.0	0.18	11.4	0.0	2.0	1	1	0	1	1	1	0	Sigma-70,	region	4
TetR_N	PF00440.23	gi|55376710|ref|YP_134561.1|	-	0.061	13.1	0.0	0.16	11.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_28	PF13518.6	gi|55376710|ref|YP_134561.1|	-	0.067	13.3	0.1	4.3	7.5	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_40	PF14493.6	gi|55376710|ref|YP_134561.1|	-	0.097	13.1	0.1	0.43	11.1	0.0	2.1	2	1	1	3	3	3	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|55376710|ref|YP_134561.1|	-	0.11	12.1	0.0	0.34	10.5	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_9	PF08221.11	gi|55376710|ref|YP_134561.1|	-	0.17	12.0	0.2	1.7	8.8	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_31	PF13560.6	gi|55376710|ref|YP_134561.1|	-	0.26	11.6	8.4	1.9	8.9	8.4	2.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
ABC2_membrane_2	PF12679.7	gi|55376711|ref|YP_134562.1|	-	3.5e-06	26.5	20.8	0.00016	21.0	20.7	2.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|55376711|ref|YP_134562.1|	-	0.013	14.6	14.3	0.0055	15.9	11.9	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
HrcA_DNA-bdg	PF03444.15	gi|55376711|ref|YP_134562.1|	-	0.2	11.3	0.2	0.45	10.2	0.2	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
ABC_tran	PF00005.27	gi|55376712|ref|YP_134563.1|	-	2.3e-27	96.2	0.0	3e-27	95.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|55376712|ref|YP_134563.1|	-	3e-18	66.7	0.2	2.4e-09	37.4	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|55376712|ref|YP_134563.1|	-	2.8e-05	24.0	0.0	0.0024	17.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|55376712|ref|YP_134563.1|	-	3.1e-05	23.5	0.0	0.15	11.4	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|55376712|ref|YP_134563.1|	-	0.00056	20.5	0.0	0.00081	19.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_13	PF13166.6	gi|55376712|ref|YP_134563.1|	-	0.0045	15.7	0.0	0.56	8.8	0.0	2.0	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|55376712|ref|YP_134563.1|	-	0.0045	16.7	0.0	0.0093	15.7	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|55376712|ref|YP_134563.1|	-	0.013	15.7	0.0	0.019	15.1	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|55376712|ref|YP_134563.1|	-	0.036	14.5	0.0	0.06	13.7	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
cobW	PF02492.19	gi|55376712|ref|YP_134563.1|	-	0.044	13.4	0.4	0.085	12.4	0.4	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
SbcCD_C	PF13558.6	gi|55376712|ref|YP_134563.1|	-	0.05	13.8	0.0	0.36	11.1	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
RsgA_GTPase	PF03193.16	gi|55376712|ref|YP_134563.1|	-	0.1	12.5	0.1	0.21	11.5	0.0	1.5	2	0	0	2	2	2	0	RsgA	GTPase
DLIC	PF05783.11	gi|55376712|ref|YP_134563.1|	-	0.13	11.1	0.0	0.17	10.7	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
NosD	PF05048.13	gi|55376713|ref|YP_134564.1|	-	2.5e-23	82.6	5.0	9.2e-23	80.7	1.5	2.1	1	1	1	2	2	2	1	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|55376713|ref|YP_134564.1|	-	2e-14	53.8	14.3	6.6e-10	39.1	5.4	3.1	1	1	1	2	2	2	2	Right	handed	beta	helix	region
NosL	PF05573.12	gi|55376713|ref|YP_134564.1|	-	8.3e-14	52.1	0.0	1.7e-13	51.1	0.0	1.4	1	0	0	1	1	1	1	NosL
DUF1565	PF07602.11	gi|55376713|ref|YP_134564.1|	-	0.0062	15.9	15.0	1.3	8.3	15.0	2.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1565)
Molybdopterin	PF00384.22	gi|55376714|ref|YP_134565.1|	-	4.1e-80	269.9	0.0	5e-80	269.6	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|55376714|ref|YP_134565.1|	-	1.1e-32	112.3	0.0	2.1e-32	111.4	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|55376714|ref|YP_134565.1|	-	2.7e-05	24.1	5.4	3.2e-05	23.8	3.7	2.1	2	1	0	2	2	2	1	Molybdopterin	oxidoreductase	Fe4S4	domain
zf-ribbon_3	PF13248.6	gi|55376714|ref|YP_134565.1|	-	0.045	13.2	0.2	0.17	11.3	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF969	PF06149.12	gi|55376715|ref|YP_134566.1|	-	0.011	15.2	0.6	0.012	15.0	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
IMPDH	PF00478.25	gi|55376716|ref|YP_134567.1|	-	7.2e-117	390.2	7.2	8.7e-117	390.0	7.2	1.1	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.15	gi|55376716|ref|YP_134567.1|	-	8.9e-07	28.6	12.8	0.0028	17.1	7.9	2.4	1	1	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|55376716|ref|YP_134567.1|	-	3.5e-06	26.3	10.6	7.1e-06	25.3	10.6	1.6	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|55376716|ref|YP_134567.1|	-	1.6e-05	24.5	1.7	0.00019	21.0	0.1	2.4	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
Glu_synthase	PF01645.17	gi|55376716|ref|YP_134567.1|	-	0.00046	19.4	6.4	0.00078	18.7	3.0	2.6	3	0	0	3	3	3	1	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.21	gi|55376716|ref|YP_134567.1|	-	0.0076	15.5	0.6	0.0076	15.5	0.6	1.7	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
Aldolase	PF01081.19	gi|55376716|ref|YP_134567.1|	-	0.01	15.3	4.7	0.021	14.2	0.6	2.8	1	1	2	3	3	3	0	KDPG	and	KHG	aldolase
TMP-TENI	PF02581.17	gi|55376716|ref|YP_134567.1|	-	0.022	14.1	5.9	0.043	13.2	5.6	1.6	1	1	0	1	1	1	0	Thiamine	monophosphate	synthase
ThiG	PF05690.14	gi|55376716|ref|YP_134567.1|	-	2.8	7.2	12.1	0.068	12.5	1.4	2.9	2	1	1	3	3	3	0	Thiazole	biosynthesis	protein	ThiG
Response_reg	PF00072.24	gi|55376718|ref|YP_134569.1|	-	1.4e-21	76.7	0.0	4.1e-21	75.3	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|55376718|ref|YP_134569.1|	-	1.8e-18	66.8	0.1	3.9e-18	65.7	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
GAF_2	PF13185.6	gi|55376718|ref|YP_134569.1|	-	2.5e-18	66.7	1.5	1.7e-17	64.0	0.1	2.8	3	0	0	3	3	3	1	GAF	domain
HATPase_c	PF02518.26	gi|55376718|ref|YP_134569.1|	-	5.3e-17	62.3	0.2	1.7e-16	60.7	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|55376718|ref|YP_134569.1|	-	1.9e-16	59.8	5.5	2.6e-16	59.4	1.5	2.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|55376718|ref|YP_134569.1|	-	3.6e-11	43.2	0.0	9.4e-11	41.9	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|55376718|ref|YP_134569.1|	-	1.9e-10	40.7	0.0	4.8e-10	39.4	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.26	gi|55376718|ref|YP_134569.1|	-	9.1e-09	36.1	0.0	1.6e-07	32.0	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|55376718|ref|YP_134569.1|	-	1.5e-07	31.8	0.1	6.1e-07	29.8	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
PAS_3	PF08447.12	gi|55376718|ref|YP_134569.1|	-	2.4e-06	27.7	0.0	7.8e-06	26.1	0.0	2.0	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|55376718|ref|YP_134569.1|	-	0.00038	20.4	0.0	0.0016	18.5	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
HATPase_c_3	PF13589.6	gi|55376718|ref|YP_134569.1|	-	0.011	15.6	0.0	0.025	14.4	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|55376718|ref|YP_134569.1|	-	0.02	14.8	0.0	0.02	14.8	0.0	2.4	3	0	0	3	3	2	0	Histidine	kinase-like	ATPase	domain
TBCA	PF02970.16	gi|55376718|ref|YP_134569.1|	-	0.099	13.0	0.8	0.38	11.1	0.8	2.0	1	0	0	1	1	1	0	Tubulin	binding	cofactor	A
PAS_4	PF08448.10	gi|55376719|ref|YP_134570.1|	-	1.9e-50	169.7	19.1	4.8e-14	52.5	0.0	6.7	6	1	0	6	6	6	4	PAS	fold
PAS	PF00989.25	gi|55376719|ref|YP_134570.1|	-	1.9e-33	114.8	4.5	1.4e-13	50.8	0.0	6.0	5	1	0	5	5	5	5	PAS	fold
PAS_9	PF13426.7	gi|55376719|ref|YP_134570.1|	-	4.7e-30	103.9	2.3	2.8e-11	43.6	0.0	5.6	5	0	0	5	5	5	4	PAS	domain
PAS_3	PF08447.12	gi|55376719|ref|YP_134570.1|	-	1.6e-20	73.1	0.2	4.1e-11	43.0	0.1	3.9	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.7	gi|55376719|ref|YP_134570.1|	-	6.1e-19	67.6	0.2	6.2e-07	29.3	0.0	5.3	4	0	0	4	4	4	4	PAS	domain
GAF_2	PF13185.6	gi|55376719|ref|YP_134570.1|	-	1.2e-18	67.7	8.4	4e-10	40.1	0.6	4.6	4	0	0	4	4	4	2	GAF	domain
GAF_3	PF13492.6	gi|55376719|ref|YP_134570.1|	-	1.8e-16	60.6	0.3	3.5e-09	37.1	0.0	3.9	4	0	0	4	4	4	2	GAF	domain
HATPase_c	PF02518.26	gi|55376719|ref|YP_134570.1|	-	9.7e-15	55.0	0.1	2.1e-14	54.0	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|55376719|ref|YP_134570.1|	-	5.5e-14	52.3	0.1	1.9e-13	50.6	0.0	2.0	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|55376719|ref|YP_134570.1|	-	6.6e-12	45.3	0.7	6.6e-12	45.3	0.7	3.9	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|55376719|ref|YP_134570.1|	-	1.6e-09	38.5	0.2	4.1e-07	30.7	0.0	3.1	2	0	0	2	2	2	1	GAF	domain
PAS_10	PF13596.6	gi|55376719|ref|YP_134570.1|	-	0.014	16.0	0.0	0.14	12.8	0.0	2.8	3	0	0	3	3	3	0	PAS	domain
POTRA_TamA_1	PF17243.2	gi|55376719|ref|YP_134570.1|	-	0.28	11.3	2.4	42	4.3	0.0	4.5	5	0	0	5	5	5	0	POTRA	domain	TamA	domain	1
ELFV_dehydrog	PF00208.21	gi|55376720|ref|YP_134571.1|	-	2.9e-72	243.3	0.1	3.6e-72	243.0	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|55376720|ref|YP_134571.1|	-	1.6e-56	189.8	0.0	2.5e-56	189.1	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|55376720|ref|YP_134571.1|	-	0.0047	16.3	0.0	0.0086	15.4	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|55376720|ref|YP_134571.1|	-	0.016	14.8	0.0	0.031	13.8	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AdoHcyase_NAD	PF00670.21	gi|55376720|ref|YP_134571.1|	-	0.11	12.5	0.0	0.21	11.7	0.0	1.5	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
zf-C2HC5	PF06221.13	gi|55376721|ref|YP_134572.1|	-	0.00043	20.2	0.4	0.00049	20.0	0.4	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
Zn-ribbon_8	PF09723.10	gi|55376721|ref|YP_134572.1|	-	0.0014	18.7	1.4	0.0019	18.3	1.4	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
DZR	PF12773.7	gi|55376721|ref|YP_134572.1|	-	0.0015	18.5	1.2	0.0016	18.4	1.2	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF1272	PF06906.11	gi|55376721|ref|YP_134572.1|	-	0.018	15.1	0.7	0.02	14.9	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
NOB1_Zn_bind	PF08772.11	gi|55376721|ref|YP_134572.1|	-	0.036	14.2	0.4	0.041	14.0	0.4	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-H2C2_2	PF13465.6	gi|55376721|ref|YP_134572.1|	-	0.041	14.3	0.3	0.041	14.3	0.3	1.7	2	0	0	2	2	2	0	Zinc-finger	double	domain
YhfH	PF14149.6	gi|55376721|ref|YP_134572.1|	-	0.084	12.9	4.2	3.4	7.7	0.1	2.1	1	1	1	2	2	2	0	YhfH-like	protein
RNA_pol_N	PF01194.17	gi|55376721|ref|YP_134572.1|	-	0.15	12.4	1.1	0.25	11.7	1.2	1.5	1	1	0	1	1	1	0	RNA	polymerases	N	/	8	kDa	subunit
BAT	PF15915.5	gi|55376722|ref|YP_134573.1|	-	1.1e-35	122.8	7.7	1.1e-35	122.8	7.7	3.2	4	0	0	4	4	4	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|55376722|ref|YP_134573.1|	-	5e-28	98.1	2.3	4.9e-18	65.8	0.1	2.7	2	0	0	2	2	2	2	GAF	domain
HTH_10	PF04967.12	gi|55376722|ref|YP_134573.1|	-	1.4e-17	63.2	0.0	4.5e-17	61.6	0.0	2.0	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_3	PF13492.6	gi|55376722|ref|YP_134573.1|	-	2.2e-13	50.7	2.7	2.8e-08	34.2	0.1	3.8	5	0	0	5	5	5	2	GAF	domain
PAS_4	PF08448.10	gi|55376722|ref|YP_134573.1|	-	5.1e-12	46.0	4.7	1.6e-09	37.9	0.4	3.8	3	1	0	3	3	3	2	PAS	fold
Response_reg	PF00072.24	gi|55376722|ref|YP_134573.1|	-	2.6e-11	43.7	0.4	1.7e-10	41.1	0.0	2.6	2	1	0	2	2	2	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|55376722|ref|YP_134573.1|	-	1.8e-09	38.4	1.5	0.0027	18.3	0.0	3.2	3	0	0	3	3	3	2	GAF	domain
PAS_9	PF13426.7	gi|55376722|ref|YP_134573.1|	-	2.6e-09	37.3	0.3	4.4e-07	30.1	0.0	3.2	2	0	0	2	2	2	1	PAS	domain
PAS	PF00989.25	gi|55376722|ref|YP_134573.1|	-	5.5e-06	26.3	6.1	0.00082	19.4	0.1	3.9	5	0	0	5	5	5	2	PAS	fold
PAS_8	PF13188.7	gi|55376722|ref|YP_134573.1|	-	0.00084	19.3	0.1	0.0055	16.7	0.1	2.4	2	0	0	2	2	2	1	PAS	domain
PAS_7	PF12860.7	gi|55376722|ref|YP_134573.1|	-	0.011	15.9	4.2	1	9.5	0.1	4.1	3	3	0	3	3	3	0	PAS	fold
RHH_1	PF01402.21	gi|55376723|ref|YP_134574.1|	-	4.3e-10	39.1	0.1	4.3e-10	39.1	0.1	2.4	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|55376723|ref|YP_134574.1|	-	0.0011	18.9	0.0	0.0029	17.5	0.0	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
PSK_trans_fac	PF07704.11	gi|55376723|ref|YP_134574.1|	-	0.0077	17.0	0.6	0.053	14.3	0.1	2.2	1	1	1	2	2	2	1	Rv0623-like	transcription	factor
PUB	PF09409.10	gi|55376723|ref|YP_134574.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	PUB	domain
TraY	PF05509.11	gi|55376723|ref|YP_134574.1|	-	0.029	14.4	0.2	0.12	12.5	0.1	2.0	2	0	0	2	2	2	0	TraY	domain
NETI	PF14044.6	gi|55376723|ref|YP_134574.1|	-	0.14	11.9	0.0	1.8	8.4	0.0	2.4	2	0	0	2	2	2	0	NETI	protein
Nramp	PF01566.18	gi|55376724|ref|YP_134575.1|	-	2e-99	333.0	24.3	2.5e-99	332.7	24.3	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
LPD14	PF18827.1	gi|55376724|ref|YP_134575.1|	-	0.051	13.8	1.4	37	4.6	0.1	3.4	2	1	1	3	3	3	0	Large	polyvalent	protein-associated	domain	14
Hydantoinase_A	PF01968.18	gi|55376725|ref|YP_134576.1|	-	3.1e-100	335.2	10.6	1.7e-99	332.8	4.8	2.3	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|55376725|ref|YP_134576.1|	-	2.4e-51	174.0	1.8	1.3e-50	171.6	0.2	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|55376725|ref|YP_134576.1|	-	0.0025	16.5	5.3	0.023	13.3	0.4	2.6	3	0	0	3	3	3	2	MutL	protein
FtsA	PF14450.6	gi|55376725|ref|YP_134576.1|	-	0.081	13.3	0.2	1.4	9.4	0.0	2.4	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Hydantoinase_B	PF02538.14	gi|55376726|ref|YP_134577.1|	-	2.3e-202	673.0	3.2	2.6e-202	672.8	3.2	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
DUF3592	PF12158.8	gi|55376727|ref|YP_134578.1|	-	2.5e-26	92.5	6.9	2.5e-26	92.5	6.9	2.0	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3592)
TPPK_C	PF12555.8	gi|55376727|ref|YP_134578.1|	-	1.3	9.1	5.8	0.71	10.0	1.6	2.4	2	0	0	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
PAS_9	PF13426.7	gi|55376728|ref|YP_134579.1|	-	2e-09	37.6	0.0	3.6e-09	36.8	0.0	1.4	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|55376728|ref|YP_134579.1|	-	0.00047	20.1	0.0	0.00069	19.6	0.0	1.3	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|55376728|ref|YP_134579.1|	-	0.083	12.9	0.0	0.35	10.9	0.0	2.1	1	1	2	3	3	3	0	PAS	domain
DUF4864	PF16156.5	gi|55376729|ref|YP_134580.1|	-	1e-10	42.2	0.0	1.8e-10	41.4	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4864)
Na_H_antiporter	PF03553.14	gi|55376730|ref|YP_134581.1|	-	7.3e-55	186.3	46.4	1.4e-50	172.2	26.1	2.2	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Reticulon	PF02453.17	gi|55376730|ref|YP_134581.1|	-	0.88	9.5	0.0	0.88	9.5	0.0	3.1	3	0	0	3	3	3	0	Reticulon
IclR	PF01614.18	gi|55376732|ref|YP_134583.1|	-	4.3e-36	123.6	0.1	1.7e-35	121.6	0.0	1.9	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|55376732|ref|YP_134583.1|	-	5.1e-07	29.4	0.3	1.2e-06	28.2	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|55376732|ref|YP_134583.1|	-	2.2e-05	23.9	0.0	4.7e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|55376732|ref|YP_134583.1|	-	0.00014	21.6	0.0	0.00027	20.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|55376732|ref|YP_134583.1|	-	0.00044	20.2	0.0	0.0012	18.8	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|55376732|ref|YP_134583.1|	-	0.0012	19.3	0.1	0.0046	17.4	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|55376732|ref|YP_134583.1|	-	0.0033	17.3	0.0	0.0088	16.0	0.0	1.7	1	0	0	1	1	1	1	MarR	family
ANAPC2	PF08672.11	gi|55376732|ref|YP_134583.1|	-	0.0038	17.7	0.1	0.013	16.0	0.0	2.1	2	1	0	2	2	2	1	Anaphase	promoting	complex	(APC)	subunit	2
MarR_2	PF12802.7	gi|55376732|ref|YP_134583.1|	-	0.0089	15.9	0.0	0.022	14.6	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|55376732|ref|YP_134583.1|	-	0.014	15.5	0.0	0.03	14.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|55376732|ref|YP_134583.1|	-	0.033	14.1	0.0	0.11	12.4	0.0	1.9	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SMC_Nse1	PF07574.13	gi|55376732|ref|YP_134583.1|	-	0.063	13.2	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	Nse1	non-SMC	component	of	SMC5-6	complex
Laminin_G_3	PF13385.6	gi|55376732|ref|YP_134583.1|	-	0.11	12.6	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Concanavalin	A-like	lectin/glucanases	superfamily
NAD_binding_8	PF13450.6	gi|55376733|ref|YP_134584.1|	-	6.3e-05	23.1	0.3	0.00013	22.1	0.3	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|55376733|ref|YP_134584.1|	-	0.0001	21.7	0.0	0.00014	21.3	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|55376733|ref|YP_134584.1|	-	0.0025	17.1	0.0	0.0033	16.7	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|55376733|ref|YP_134584.1|	-	0.014	14.1	0.0	0.022	13.4	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|55376733|ref|YP_134584.1|	-	0.024	13.7	0.1	0.047	12.8	0.1	1.5	1	0	0	1	1	1	0	FAD	binding	domain
DAO	PF01266.24	gi|55376733|ref|YP_134584.1|	-	0.026	14.1	0.1	0.038	13.6	0.1	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|55376733|ref|YP_134584.1|	-	0.15	11.1	0.1	0.23	10.5	0.1	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
DDE_Tnp_IS240	PF13610.6	gi|55376734|ref|YP_134585.1|	-	1.1e-21	77.6	0.2	1.5e-21	77.1	0.2	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|55376734|ref|YP_134585.1|	-	1.2e-06	28.1	3.1	2.8e-06	27.0	3.1	1.6	1	1	0	1	1	1	1	Integrase	core	domain
rve	PF00665.26	gi|55376734|ref|YP_134585.1|	-	0.0018	18.5	0.2	0.0038	17.4	0.1	1.6	1	1	0	1	1	1	1	Integrase	core	domain
DnaT	PF17948.1	gi|55376734|ref|YP_134585.1|	-	0.0063	16.2	2.2	0.012	15.3	2.2	1.5	1	0	0	1	1	1	1	DnaT	DNA-binding	domain
DUF2384	PF09722.10	gi|55376734|ref|YP_134585.1|	-	0.0085	16.1	1.7	0.18	11.9	0.1	3.0	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
Preseq_ALAS	PF09029.10	gi|55376735|ref|YP_134586.1|	-	0.054	14.0	0.2	0.07	13.6	0.2	1.2	1	0	0	1	1	1	0	5-aminolevulinate	synthase	presequence
AAA_31	PF13614.6	gi|55376736|ref|YP_134587.1|	-	7.9e-22	78.0	0.0	1.3e-21	77.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|55376736|ref|YP_134587.1|	-	1.6e-15	57.3	0.0	3.3e-15	56.3	0.0	1.6	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|55376736|ref|YP_134587.1|	-	6.4e-08	32.3	0.3	8.5e-07	28.7	0.3	2.1	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|55376736|ref|YP_134587.1|	-	3.8e-07	29.6	0.0	9.6e-06	25.0	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|55376736|ref|YP_134587.1|	-	9.6e-07	28.3	0.1	0.00029	20.2	0.0	2.5	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|55376736|ref|YP_134587.1|	-	1.9e-06	27.6	0.0	3.7e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|55376736|ref|YP_134587.1|	-	0.00078	19.0	0.0	0.0015	18.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|55376736|ref|YP_134587.1|	-	0.024	14.2	0.2	0.079	12.5	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|55376736|ref|YP_134587.1|	-	0.072	12.9	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_24	PF13479.6	gi|55376736|ref|YP_134587.1|	-	0.13	12.0	0.0	0.69	9.6	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
Phage_integrase	PF00589.22	gi|55376737|ref|YP_134588.1|	-	2e-07	31.0	0.0	4e-07	30.0	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
SBF	PF01758.16	gi|55376739|ref|YP_134590.1|	-	7.6e-36	123.6	9.7	1.2e-35	123.0	9.7	1.3	1	0	0	1	1	1	1	Sodium	Bile	acid	symporter	family
SBF_like	PF13593.6	gi|55376739|ref|YP_134590.1|	-	2.4e-14	53.4	11.4	2.7e-14	53.2	11.4	1.1	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
Bestrophin	PF01062.21	gi|55376739|ref|YP_134590.1|	-	0.12	11.8	0.7	0.16	11.3	0.7	1.1	1	0	0	1	1	1	0	Bestrophin,	RFP-TM,	chloride	channel
Bac_export_2	PF01312.19	gi|55376739|ref|YP_134590.1|	-	0.48	9.6	4.0	0.76	8.9	4.0	1.3	1	0	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
Mem_trans	PF03547.18	gi|55376739|ref|YP_134590.1|	-	1.5	7.1	9.4	1.6	7.0	5.8	2.4	1	1	1	3	3	3	0	Membrane	transport	protein
LUD_dom	PF02589.15	gi|55376740|ref|YP_134591.1|	-	5e-39	134.0	0.1	5.8e-39	133.8	0.1	1.1	1	0	0	1	1	1	1	LUD	domain
OKR_DC_1_N	PF03709.15	gi|55376740|ref|YP_134591.1|	-	0.011	16.0	0.1	0.028	14.7	0.1	1.7	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Secretin_N	PF03958.17	gi|55376740|ref|YP_134591.1|	-	0.011	16.1	0.4	0.035	14.5	0.2	2.0	1	1	1	2	2	2	0	Bacterial	type	II/III	secretion	system	short	domain
RsgA_GTPase	PF03193.16	gi|55376740|ref|YP_134591.1|	-	0.034	14.0	0.1	0.065	13.1	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
CoA_transf_3	PF02515.17	gi|55376740|ref|YP_134591.1|	-	0.055	12.6	0.1	0.15	11.1	0.1	1.6	2	0	0	2	2	2	0	CoA-transferase	family	III
BOFC_N	PF08977.10	gi|55376740|ref|YP_134591.1|	-	1.6	8.8	3.3	18	5.4	0.1	2.3	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
TetR_C_6	PF13977.6	gi|55376741|ref|YP_134592.1|	-	1.4e-13	51.1	0.2	2.1e-13	50.5	0.2	1.3	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|55376741|ref|YP_134592.1|	-	1.6e-09	37.4	1.2	2e-09	37.1	0.1	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_7	PF14246.6	gi|55376741|ref|YP_134592.1|	-	0.001	19.1	0.2	0.0016	18.5	0.2	1.3	1	0	0	1	1	1	1	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_24	PF17932.1	gi|55376741|ref|YP_134592.1|	-	0.0028	17.9	0.0	0.0068	16.7	0.0	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|55376741|ref|YP_134592.1|	-	0.0096	16.2	0.3	0.02	15.2	0.3	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|55376741|ref|YP_134592.1|	-	0.019	15.0	0.1	0.042	13.9	0.1	1.6	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|55376741|ref|YP_134592.1|	-	0.023	14.8	0.4	0.043	13.9	0.0	1.7	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
DUF5069	PF16798.5	gi|55376741|ref|YP_134592.1|	-	0.043	14.0	0.0	0.1	12.8	0.0	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5069)
TIG	PF01833.24	gi|55376741|ref|YP_134592.1|	-	0.064	13.3	0.0	0.11	12.6	0.0	1.3	1	0	0	1	1	1	0	IPT/TIG	domain
TetR_C_31	PF17940.1	gi|55376741|ref|YP_134592.1|	-	0.084	13.1	0.5	0.16	12.1	0.5	1.6	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_23	PF13384.6	gi|55376741|ref|YP_134592.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
CRAL_TRIO_N	PF03765.15	gi|55376741|ref|YP_134592.1|	-	0.15	12.3	0.0	0.33	11.2	0.0	1.6	1	0	0	1	1	1	0	CRAL/TRIO,	N-terminal	domain
MMPL	PF03176.15	gi|55376742|ref|YP_134593.1|	-	1.9e-28	99.4	25.5	8.2e-21	74.3	2.3	2.6	2	1	0	2	2	2	2	MMPL	family
Patched	PF02460.18	gi|55376742|ref|YP_134593.1|	-	9.9e-10	37.2	13.8	5.2e-09	34.8	4.8	2.2	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|55376742|ref|YP_134593.1|	-	1.2e-07	31.7	3.4	2e-05	24.5	0.2	2.8	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
SecD_SecF	PF02355.16	gi|55376742|ref|YP_134593.1|	-	0.0004	19.8	2.0	0.0004	19.8	2.0	2.4	2	0	0	2	2	2	1	Protein	export	membrane	protein
CARDB	PF07705.11	gi|55376743|ref|YP_134594.1|	-	2.2e-11	43.9	24.5	0.065	13.5	0.6	5.7	5	1	0	5	5	5	5	CARDB
NPCBM_assoc	PF10633.9	gi|55376743|ref|YP_134594.1|	-	8e-11	42.0	21.7	0.00037	20.7	0.5	7.9	5	4	1	6	6	6	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|55376743|ref|YP_134594.1|	-	7.6e-08	32.5	39.2	0.014	15.7	1.3	6.6	5	3	0	5	5	5	5	Domain	of	unknown	function	DUF11
ASH	PF15780.5	gi|55376743|ref|YP_134594.1|	-	0.00032	20.9	9.0	0.24	11.6	0.0	5.2	5	0	0	5	5	5	2	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Transglut_C	PF00927.22	gi|55376743|ref|YP_134594.1|	-	0.00049	20.2	0.4	4.1	7.6	0.0	4.1	4	0	0	4	4	4	2	Transglutaminase	family,	C-terminal	ig	like	domain
AP3B1_C	PF14796.6	gi|55376743|ref|YP_134594.1|	-	0.004	17.4	3.7	0.067	13.4	0.0	3.7	4	0	0	4	4	4	1	Clathrin-adaptor	complex-3	beta-1	subunit	C-terminal
FAS_meander	PF17951.1	gi|55376743|ref|YP_134594.1|	-	0.013	15.3	0.2	0.087	12.6	0.0	2.5	2	1	0	2	2	2	0	Fatty	acid	synthase	meander	beta	sheet	domain
MBG	PF17883.1	gi|55376743|ref|YP_134594.1|	-	0.054	14.1	0.1	0.054	14.1	0.1	4.8	5	2	0	5	5	5	0	MBG	domain
TetR_C_6	PF13977.6	gi|55376744|ref|YP_134595.1|	-	3.9e-12	46.4	0.1	5.6e-12	45.9	0.1	1.2	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|55376744|ref|YP_134595.1|	-	2.7e-10	39.9	0.2	5.9e-10	38.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_27	PF17935.1	gi|55376744|ref|YP_134595.1|	-	2.2e-05	24.4	0.1	4e-05	23.6	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|55376744|ref|YP_134595.1|	-	2.3e-05	24.5	0.0	4.7e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|55376744|ref|YP_134595.1|	-	0.00053	20.2	0.1	0.0012	19.1	0.1	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|55376744|ref|YP_134595.1|	-	0.0066	16.5	0.1	0.011	15.8	0.1	1.4	1	0	0	1	1	1	1	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_17	PF17922.1	gi|55376744|ref|YP_134595.1|	-	0.0099	16.0	0.0	0.039	14.0	0.0	1.9	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|55376744|ref|YP_134595.1|	-	0.031	13.8	0.0	0.072	12.6	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_5	PF01022.20	gi|55376744|ref|YP_134595.1|	-	0.068	13.0	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Hemopexin	PF00045.19	gi|55376745|ref|YP_134596.1|	-	0.02	14.9	0.7	0.19	11.7	0.3	2.4	2	0	0	2	2	2	0	Hemopexin
HalOD1	PF18545.1	gi|55376746|ref|YP_134597.1|	-	1.8e-12	47.3	0.1	2.4e-12	46.9	0.1	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
OAD_gamma	PF04277.13	gi|55376746|ref|YP_134597.1|	-	0.13	12.9	0.1	0.17	12.5	0.1	1.2	1	0	0	1	1	1	0	Oxaloacetate	decarboxylase,	gamma	chain
Cdc6_C	PF09079.11	gi|55376747|ref|YP_134598.1|	-	5e-22	77.7	0.0	1.7e-21	76.0	0.0	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|55376747|ref|YP_134598.1|	-	3.3e-10	40.4	0.0	7.6e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|55376747|ref|YP_134598.1|	-	1.2e-09	38.8	0.3	1.4e-08	35.3	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
DUF815	PF05673.13	gi|55376747|ref|YP_134598.1|	-	0.0021	17.3	0.0	0.0035	16.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA	PF00004.29	gi|55376747|ref|YP_134598.1|	-	0.0053	17.2	0.0	0.013	15.9	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|55376747|ref|YP_134598.1|	-	0.0072	16.3	0.0	0.015	15.2	0.0	1.5	2	0	0	2	2	2	1	NACHT	domain
ATPase_2	PF01637.18	gi|55376747|ref|YP_134598.1|	-	0.0088	16.0	0.0	0.014	15.3	0.0	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RNA_helicase	PF00910.22	gi|55376747|ref|YP_134598.1|	-	0.035	14.5	0.0	0.072	13.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_7	PF12775.7	gi|55376747|ref|YP_134598.1|	-	0.054	13.0	0.0	0.097	12.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DEAD	PF00270.29	gi|55376747|ref|YP_134598.1|	-	0.083	12.7	0.3	5.4	6.8	0.0	2.3	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
HTH_10	PF04967.12	gi|55376748|ref|YP_134599.1|	-	2.8e-17	62.2	0.0	4.6e-17	61.6	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_1	PF00126.27	gi|55376748|ref|YP_134599.1|	-	0.0012	18.8	0.0	0.0022	17.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.12	gi|55376748|ref|YP_134599.1|	-	0.0031	17.1	0.0	0.017	14.8	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_20	PF12840.7	gi|55376748|ref|YP_134599.1|	-	0.005	16.9	0.0	0.013	15.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|55376748|ref|YP_134599.1|	-	0.0095	15.7	0.0	0.027	14.2	0.0	1.9	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|55376748|ref|YP_134599.1|	-	0.027	14.3	0.0	0.058	13.2	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_5	PF01022.20	gi|55376748|ref|YP_134599.1|	-	0.028	14.3	0.0	0.053	13.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|55376748|ref|YP_134599.1|	-	0.028	14.3	0.0	0.055	13.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_30	PF13556.6	gi|55376748|ref|YP_134599.1|	-	0.049	13.4	0.0	0.095	12.5	0.0	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
CENP-B_N	PF04218.13	gi|55376748|ref|YP_134599.1|	-	0.053	13.2	0.0	0.095	12.4	0.0	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
GerE	PF00196.19	gi|55376748|ref|YP_134599.1|	-	0.097	12.2	0.0	0.32	10.6	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Oxidored_q6	PF01058.22	gi|55376749|ref|YP_134600.1|	-	7.7e-22	77.5	0.1	1.1e-21	77.0	0.1	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Peripla_BP_2	PF01497.18	gi|55376750|ref|YP_134601.1|	-	3.5e-11	43.1	0.0	7.4e-11	42.1	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
GFO_IDH_MocA	PF01408.22	gi|55376751|ref|YP_134602.1|	-	1.7e-20	74.0	0.0	4.8e-20	72.6	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|55376751|ref|YP_134602.1|	-	0.03	14.3	0.0	0.072	13.1	0.0	1.7	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Amidohydro_3	PF07969.11	gi|55376752|ref|YP_134603.1|	-	4.9e-10	39.5	1.2	0.00014	21.4	0.0	2.6	2	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|55376752|ref|YP_134603.1|	-	0.00011	21.7	1.1	0.0025	17.2	0.0	2.9	2	1	1	3	3	3	1	Amidohydrolase	family
TMEM232	PF15877.5	gi|55376753|ref|YP_134604.1|	-	0.017	14.1	0.0	0.02	13.9	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein	family	232
HTH_20	PF12840.7	gi|55376753|ref|YP_134604.1|	-	0.039	14.0	0.1	0.1	12.7	0.1	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|55376753|ref|YP_134604.1|	-	0.062	13.2	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	HTH	domain
DUF4191	PF13829.6	gi|55376753|ref|YP_134604.1|	-	0.075	12.4	0.0	0.83	9.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4191)
DUF2892	PF11127.8	gi|55376753|ref|YP_134604.1|	-	2.1	8.4	7.9	4	7.6	7.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
HTH_45	PF14947.6	gi|55376754|ref|YP_134605.1|	-	6.8e-06	26.0	0.0	8.1e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|55376754|ref|YP_134605.1|	-	0.00032	20.7	0.4	0.0004	20.4	0.4	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|55376754|ref|YP_134605.1|	-	0.0012	18.6	0.0	0.0019	18.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Replic_Relax	PF13814.6	gi|55376754|ref|YP_134605.1|	-	0.0044	17.1	0.0	0.005	16.9	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_Crp_2	PF13545.6	gi|55376754|ref|YP_134605.1|	-	0.011	15.7	0.1	0.014	15.4	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.19	gi|55376754|ref|YP_134605.1|	-	0.017	15.0	0.1	0.045	13.6	0.1	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4364	PF14277.6	gi|55376754|ref|YP_134605.1|	-	0.022	14.5	0.0	0.029	14.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
MarR_2	PF12802.7	gi|55376754|ref|YP_134605.1|	-	0.024	14.5	0.5	0.032	14.1	0.5	1.2	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.6	gi|55376754|ref|YP_134605.1|	-	0.086	13.4	0.2	0.12	12.9	0.2	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HxlR	PF01638.17	gi|55376754|ref|YP_134605.1|	-	0.096	12.5	0.1	0.13	12.1	0.1	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
FUR	PF01475.19	gi|55376754|ref|YP_134605.1|	-	0.11	12.6	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
CARDB	PF07705.11	gi|55376755|ref|YP_134606.1|	-	6.1e-12	45.7	24.4	0.0026	18.0	0.5	4.6	4	0	0	4	4	4	4	CARDB
DUF4832	PF16116.5	gi|55376755|ref|YP_134606.1|	-	2.1e-05	24.5	6.1	0.032	14.1	0.1	3.5	3	1	0	3	3	3	2	Domain	of	unknown	function	(DUF4832)
Fn3-like	PF14310.6	gi|55376755|ref|YP_134606.1|	-	0.00066	19.7	7.9	0.64	10.2	0.0	5.3	5	3	0	5	5	5	2	Fibronectin	type	III-like	domain
DUF3872	PF12988.7	gi|55376755|ref|YP_134606.1|	-	0.003	17.4	0.2	1.6	8.6	0.0	3.3	3	0	0	3	3	3	1	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3872)
Transglut_C	PF00927.22	gi|55376755|ref|YP_134606.1|	-	0.0075	16.4	0.5	6.8	6.9	0.1	3.1	4	0	0	4	4	4	2	Transglutaminase	family,	C-terminal	ig	like	domain
DUF1616	PF07760.11	gi|55376755|ref|YP_134606.1|	-	0.013	14.9	1.3	0.013	14.9	1.3	4.1	3	1	2	5	5	5	0	Protein	of	unknown	function	(DUF1616)
N_BRCA1_IG	PF16158.5	gi|55376755|ref|YP_134606.1|	-	0.066	14.0	0.9	0.56	11.0	0.0	2.9	2	1	1	3	3	3	0	Ig-like	domain	from	next	to	BRCA1	gene
A2M	PF00207.22	gi|55376755|ref|YP_134606.1|	-	0.36	10.7	2.8	6.1	6.8	0.1	3.4	4	0	0	4	4	4	0	Alpha-2-macroglobulin	family
Ig_GlcNase	PF18368.1	gi|55376755|ref|YP_134606.1|	-	5	7.3	10.0	6.5	7.0	0.0	4.4	3	2	1	4	4	4	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
Glycos_transf_2	PF00535.26	gi|55376756|ref|YP_134607.1|	-	0.0028	17.5	0.0	0.0036	17.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
BTG	PF07742.12	gi|55376756|ref|YP_134607.1|	-	0.16	11.9	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	BTG	family
DUF1616	PF07760.11	gi|55376757|ref|YP_134608.1|	-	1.6e-77	260.8	5.0	1.8e-77	260.6	5.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Mntp	PF02659.15	gi|55376757|ref|YP_134608.1|	-	0.0075	16.0	2.3	0.0075	16.0	2.3	2.2	2	1	0	2	2	2	1	Putative	manganese	efflux	pump
Glycos_transf_1	PF00534.20	gi|55376758|ref|YP_134609.1|	-	1.5e-33	115.7	0.0	2.5e-33	115.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376758|ref|YP_134609.1|	-	8.1e-30	104.0	0.0	1.9e-29	102.8	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|55376758|ref|YP_134609.1|	-	7.7e-22	78.1	0.0	1.6e-21	77.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|55376758|ref|YP_134609.1|	-	2.7e-16	60.4	0.3	8.4e-16	58.8	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|55376758|ref|YP_134609.1|	-	1.4e-05	25.3	0.0	3.7e-05	24.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|55376758|ref|YP_134609.1|	-	0.026	14.5	0.0	0.039	14.0	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Glycos_transf_1	PF00534.20	gi|55376759|ref|YP_134610.1|	-	1.6e-31	109.1	0.0	2.5e-31	108.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376759|ref|YP_134610.1|	-	1.6e-28	99.8	0.0	4.4e-28	98.4	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|55376759|ref|YP_134610.1|	-	3.2e-27	95.6	1.0	4.9e-27	95.0	1.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|55376759|ref|YP_134610.1|	-	1.2e-20	74.5	0.7	1.2e-20	74.5	0.7	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|55376759|ref|YP_134610.1|	-	6.1e-09	36.2	0.1	1.4e-08	35.0	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|55376759|ref|YP_134610.1|	-	1.5e-06	28.3	0.0	2.7e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.11	gi|55376759|ref|YP_134610.1|	-	3.2e-05	23.7	0.1	0.0098	15.6	0.0	2.3	1	1	1	2	2	2	2	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.20	gi|55376760|ref|YP_134611.1|	-	5.1e-37	127.0	0.0	2.7e-36	124.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376760|ref|YP_134611.1|	-	2.2e-33	115.6	0.3	5.8e-33	114.2	0.3	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|55376760|ref|YP_134611.1|	-	1.1e-12	48.2	0.0	3.3e-12	46.7	0.0	1.8	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|55376760|ref|YP_134611.1|	-	6.2e-08	32.9	0.1	1.7e-07	31.6	0.1	1.8	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|55376760|ref|YP_134611.1|	-	3.5e-07	30.8	1.6	9.4e-07	29.4	0.0	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
UPF0052	PF01933.18	gi|55376760|ref|YP_134611.1|	-	0.0085	15.4	0.0	0.015	14.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
DUF4131	PF13567.6	gi|55376762|ref|YP_134613.1|	-	0.058	13.0	0.1	0.058	13.0	0.1	5.2	4	2	0	4	4	4	0	Domain	of	unknown	function	(DUF4131)
Wzy_C	PF04932.15	gi|55376762|ref|YP_134613.1|	-	0.44	10.2	0.0	0.44	10.2	0.0	4.6	4	1	0	4	4	4	0	O-Antigen	ligase
Sulfatase	PF00884.23	gi|55376763|ref|YP_134614.1|	-	4.2e-43	147.9	0.2	5.3e-43	147.6	0.2	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|55376763|ref|YP_134614.1|	-	1.4e-05	24.9	3.2	0.066	12.8	0.1	2.6	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|55376763|ref|YP_134614.1|	-	0.045	13.1	0.2	0.4	10.0	0.3	2.1	2	0	0	2	2	2	0	Metalloenzyme	superfamily
Sulfatase	PF00884.23	gi|55376764|ref|YP_134615.1|	-	1.5e-40	139.5	0.1	1.9e-40	139.2	0.1	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|55376764|ref|YP_134615.1|	-	3.3e-17	63.1	1.9	1.6e-16	60.9	1.9	1.9	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|55376764|ref|YP_134615.1|	-	0.0066	15.1	0.0	0.0096	14.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
DUF4976	PF16347.5	gi|55376764|ref|YP_134615.1|	-	0.11	12.7	0.0	0.35	11.2	0.0	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4976)
Glycos_transf_2	PF00535.26	gi|55376765|ref|YP_134616.1|	-	1.1e-28	100.1	0.1	1.7e-28	99.6	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|55376765|ref|YP_134616.1|	-	1.6e-17	64.2	0.1	2.2e-17	63.7	0.1	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|55376765|ref|YP_134616.1|	-	1.2e-10	41.3	0.0	5.9e-10	39.1	0.0	1.8	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
TPR_2	PF07719.17	gi|55376765|ref|YP_134616.1|	-	0.00051	20.0	1.2	0.0011	19.0	1.2	1.5	1	0	0	1	1	1	1	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|55376765|ref|YP_134616.1|	-	0.022	15.0	0.4	0.054	13.7	0.4	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|55376765|ref|YP_134616.1|	-	0.033	14.8	1.8	0.065	13.9	1.8	1.4	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Glyco_tranf_2_5	PF13712.6	gi|55376765|ref|YP_134616.1|	-	0.18	11.5	0.0	0.28	10.9	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family
Sulfatase	PF00884.23	gi|55376766|ref|YP_134617.1|	-	2.7e-17	63.1	0.7	3.1e-16	59.6	0.1	2.1	1	1	1	2	2	2	1	Sulfatase
Phosphodiest	PF01663.22	gi|55376766|ref|YP_134617.1|	-	0.0037	16.9	0.8	0.97	8.9	0.0	2.1	1	1	1	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|55376766|ref|YP_134617.1|	-	0.22	10.1	0.0	0.25	9.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
Mtd_N	PF18454.1	gi|55376768|ref|YP_134619.1|	-	0.19	11.8	1.2	0.57	10.3	0.0	2.4	2	0	0	2	2	2	0	Major	tropism	determinant	N-terminal	domain
DUF5010_C	PF18099.1	gi|55376769|ref|YP_134620.1|	-	3.6e-66	220.3	15.3	4e-23	81.7	1.2	3.4	3	0	0	3	3	3	3	DUF5010	C-terminal	domain
CBM_6	PF03422.15	gi|55376769|ref|YP_134620.1|	-	1e-50	171.2	17.8	7.3e-19	68.3	1.6	3.7	3	0	0	3	3	3	3	Carbohydrate	binding	module	(family	6)
CBM_35	PF16990.5	gi|55376769|ref|YP_134620.1|	-	0.00031	21.0	1.7	0.015	15.5	0.2	3.4	3	0	0	3	3	3	1	Carbohydrate	binding	module	(family	35)
Glyco_hydro_114	PF03537.13	gi|55376769|ref|YP_134620.1|	-	0.0012	18.2	4.4	3.8	6.7	0.2	3.3	3	0	0	3	3	3	3	Glycoside-hydrolase	family	GH114
TALPID3	PF15324.6	gi|55376769|ref|YP_134620.1|	-	9	3.8	14.2	15	3.1	14.2	1.2	1	0	0	1	1	1	0	Hedgehog	signalling	target
PglZ	PF08665.12	gi|55376770|ref|YP_134621.1|	-	0.12	12.5	0.0	0.31	11.1	0.0	1.7	2	0	0	2	2	2	0	PglZ	domain
Polysacc_synt_3	PF13440.6	gi|55376772|ref|YP_134623.1|	-	1.9e-77	260.4	5.5	1.9e-77	260.4	5.5	1.8	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|55376772|ref|YP_134623.1|	-	7.6e-31	107.5	8.2	7.6e-31	107.5	8.2	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|55376772|ref|YP_134623.1|	-	6.1e-13	49.0	18.3	6.1e-13	49.0	18.3	3.4	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
FUSC-like	PF12805.7	gi|55376772|ref|YP_134623.1|	-	1.2	8.1	4.6	1.1	8.2	2.8	1.9	2	0	0	2	2	2	0	FUSC-like	inner	membrane	protein	yccS
GFO_IDH_MocA	PF01408.22	gi|55376773|ref|YP_134624.1|	-	2.8e-20	73.4	0.0	4.6e-20	72.6	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DUF1349	PF07081.11	gi|55376773|ref|YP_134624.1|	-	0.055	13.2	0.1	0.1	12.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1349)
CoA_binding_2	PF13380.6	gi|55376773|ref|YP_134624.1|	-	0.062	13.8	0.0	0.17	12.4	0.0	1.8	1	1	0	1	1	1	0	CoA	binding	domain
SepZ	PF06066.11	gi|55376774|ref|YP_134625.1|	-	0.092	13.0	0.0	0.1	12.8	0.0	1.1	1	0	0	1	1	1	0	SepZ
PsbQ	PF05757.11	gi|55376774|ref|YP_134625.1|	-	0.12	12.1	0.0	0.13	12.0	0.0	1.0	1	0	0	1	1	1	0	Oxygen	evolving	enhancer	protein	3	(PsbQ)
Glycos_transf_2	PF00535.26	gi|55376775|ref|YP_134626.1|	-	2.9e-09	36.9	1.3	1.4e-07	31.5	0.1	2.5	1	1	1	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|55376775|ref|YP_134626.1|	-	2.1e-06	27.8	0.4	7.2e-05	22.8	0.4	2.4	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|55376775|ref|YP_134626.1|	-	1.2e-05	25.4	0.1	1.8e-05	24.7	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_7C	PF02709.14	gi|55376775|ref|YP_134626.1|	-	6.4e-05	22.5	1.8	0.00012	21.6	1.8	1.4	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_2	PF10111.9	gi|55376775|ref|YP_134626.1|	-	0.00028	20.4	0.0	0.73	9.2	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
NTP_transferase	PF00483.23	gi|55376776|ref|YP_134627.1|	-	1.2e-39	136.4	0.0	1.3e-39	136.3	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|55376776|ref|YP_134627.1|	-	1.5e-14	54.7	0.0	1.9e-14	54.3	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|55376776|ref|YP_134627.1|	-	1.4e-06	28.2	0.0	3.1e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF3071	PF11268.8	gi|55376777|ref|YP_134628.1|	-	0.061	13.4	0.1	0.076	13.1	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
Ceramidse_alk_C	PF17048.5	gi|55376777|ref|YP_134628.1|	-	0.15	11.9	0.0	0.15	11.9	0.0	1.1	1	0	0	1	1	1	0	Neutral/alkaline	non-lysosomal	ceramidase,	C-terminal
DUF2207	PF09972.9	gi|55376779|ref|YP_134630.1|	-	0.065	12.0	0.0	0.069	11.9	0.0	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
HalOD1	PF18545.1	gi|55376780|ref|YP_134631.1|	-	8.5e-24	83.6	0.3	9.7e-24	83.4	0.3	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
GAF_2	PF13185.6	gi|55376781|ref|YP_134632.1|	-	1.8e-47	161.1	0.6	5.3e-14	52.7	0.1	4.4	4	0	0	4	4	4	4	GAF	domain
BAT	PF15915.5	gi|55376781|ref|YP_134632.1|	-	9.1e-41	139.3	3.0	3.1e-40	137.6	3.0	2.0	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
GAF	PF01590.26	gi|55376781|ref|YP_134632.1|	-	4e-21	76.0	0.0	1.7e-07	31.9	0.0	4.5	4	0	0	4	4	4	3	GAF	domain
Response_reg	PF00072.24	gi|55376781|ref|YP_134632.1|	-	8.1e-20	71.1	0.0	2.3e-19	69.6	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_3	PF13492.6	gi|55376781|ref|YP_134632.1|	-	1.4e-17	64.2	0.0	2.1e-05	24.8	0.0	4.6	4	0	0	4	4	4	3	GAF	domain
HTH_10	PF04967.12	gi|55376781|ref|YP_134632.1|	-	1.3e-16	60.1	0.0	4.8e-16	58.3	0.0	2.1	2	0	0	2	2	2	1	HTH	DNA	binding	domain
OKR_DC_1_N	PF03709.15	gi|55376781|ref|YP_134632.1|	-	1.4e-06	28.5	0.3	2.7e-05	24.4	0.0	3.1	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Sigma70_r4	PF04545.16	gi|55376781|ref|YP_134632.1|	-	0.00038	19.9	0.0	0.0024	17.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|55376781|ref|YP_134632.1|	-	0.0021	17.7	0.2	0.21	11.3	0.0	3.6	2	1	0	2	2	2	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|55376781|ref|YP_134632.1|	-	0.0034	17.2	0.0	0.0088	15.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.19	gi|55376781|ref|YP_134632.1|	-	0.0077	15.8	0.0	0.038	13.5	0.0	2.2	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_20	PF12840.7	gi|55376781|ref|YP_134632.1|	-	0.011	15.7	0.0	0.066	13.3	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF1492	PF07374.11	gi|55376781|ref|YP_134632.1|	-	0.069	13.3	0.7	21	5.3	0.0	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1492)
HTH_23	PF13384.6	gi|55376781|ref|YP_134632.1|	-	0.14	12.0	0.1	9.7	6.1	0.0	2.9	3	0	0	3	3	2	0	Homeodomain-like	domain
DUF4349	PF14257.6	gi|55376781|ref|YP_134632.1|	-	1.3	8.4	7.0	1.7	8.1	5.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
AAA_23	PF13476.6	gi|55376783|ref|YP_134634.1|	-	2.2e-07	31.6	15.7	2.2e-07	31.6	15.7	3.6	1	1	0	2	2	1	1	AAA	domain
DUF2353	PF09789.9	gi|55376783|ref|YP_134634.1|	-	1.4e-06	27.9	11.6	1.4e-06	27.9	11.6	2.7	2	1	0	2	2	2	1	Uncharacterized	coiled-coil	protein	(DUF2353)
FliJ	PF02050.16	gi|55376783|ref|YP_134634.1|	-	4e-06	27.1	40.9	0.00045	20.4	8.2	5.3	4	2	1	5	5	4	2	Flagellar	FliJ	protein
CENP-F_leu_zip	PF10473.9	gi|55376783|ref|YP_134634.1|	-	1.5e-05	25.0	55.5	0.011	15.7	8.4	4.8	2	2	2	4	4	4	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TPR_MLP1_2	PF07926.12	gi|55376783|ref|YP_134634.1|	-	2.2e-05	24.5	58.5	0.058	13.5	17.5	5.8	1	1	4	5	5	5	4	TPR/MLP1/MLP2-like	protein
SMC_N	PF02463.19	gi|55376783|ref|YP_134634.1|	-	2.6e-05	23.8	1.4	0.016	14.7	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
FlaC_arch	PF05377.11	gi|55376783|ref|YP_134634.1|	-	5.1e-05	23.6	32.7	2.6	8.5	0.1	8.2	4	3	3	8	8	8	1	Flagella	accessory	protein	C	(FlaC)
DUF1664	PF07889.12	gi|55376783|ref|YP_134634.1|	-	0.00011	22.2	28.4	0.46	10.5	3.0	4.9	3	2	3	6	6	6	5	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|55376783|ref|YP_134634.1|	-	0.00012	21.0	54.6	0.0022	17.0	13.7	3.9	2	2	1	3	3	3	3	Spc7	kinetochore	protein
AAA_13	PF13166.6	gi|55376783|ref|YP_134634.1|	-	0.00019	20.3	35.8	0.001	17.8	10.3	3.9	2	1	2	4	4	4	2	AAA	domain
Laminin_II	PF06009.12	gi|55376783|ref|YP_134634.1|	-	0.00046	20.2	34.7	0.13	12.2	4.0	4.3	1	1	3	4	4	4	3	Laminin	Domain	II
DUF724	PF05266.14	gi|55376783|ref|YP_134634.1|	-	0.0005	19.9	7.3	0.0005	19.9	7.3	3.9	2	2	2	4	4	4	1	Protein	of	unknown	function	(DUF724)
MAD	PF05557.13	gi|55376783|ref|YP_134634.1|	-	0.00058	18.4	15.1	0.00058	18.4	15.1	2.2	1	1	1	2	2	2	1	Mitotic	checkpoint	protein
HOOK	PF05622.12	gi|55376783|ref|YP_134634.1|	-	0.00058	18.1	12.3	0.00058	18.1	12.3	3.3	1	1	1	3	3	3	1	HOOK	protein
GAS	PF13851.6	gi|55376783|ref|YP_134634.1|	-	0.00072	19.0	47.1	0.0017	17.7	7.0	4.2	2	2	1	4	4	4	3	Growth-arrest	specific	micro-tubule	binding
TMF_TATA_bd	PF12325.8	gi|55376783|ref|YP_134634.1|	-	0.00091	19.4	54.3	0.019	15.2	3.9	5.1	2	2	2	5	5	3	3	TATA	element	modulatory	factor	1	TATA	binding
AAA_21	PF13304.6	gi|55376783|ref|YP_134634.1|	-	0.0017	18.3	4.7	0.0046	16.8	0.2	2.5	2	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Atg14	PF10186.9	gi|55376783|ref|YP_134634.1|	-	0.0022	17.2	12.5	0.0022	17.2	12.5	3.5	2	2	1	3	3	3	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
HemX	PF04375.14	gi|55376783|ref|YP_134634.1|	-	0.0034	16.7	5.8	0.0034	16.7	5.8	4.1	2	2	2	4	4	4	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
CorA	PF01544.18	gi|55376783|ref|YP_134634.1|	-	0.0043	16.4	13.1	0.0043	16.4	13.1	4.0	1	1	4	5	5	5	1	CorA-like	Mg2+	transporter	protein
ABC_tran_CTD	PF16326.5	gi|55376783|ref|YP_134634.1|	-	0.0056	16.9	57.8	0.17	12.1	6.0	6.0	2	2	4	6	6	6	2	ABC	transporter	C-terminal	domain
Exonuc_VII_L	PF02601.15	gi|55376783|ref|YP_134634.1|	-	0.0058	16.3	33.9	0.062	12.9	10.8	2.6	1	1	0	2	2	2	2	Exonuclease	VII,	large	subunit
Phage_GP20	PF06810.11	gi|55376783|ref|YP_134634.1|	-	0.0063	16.3	39.8	0.46	10.3	5.1	4.5	2	2	2	4	4	4	3	Phage	minor	structural	protein	GP20
DUF3584	PF12128.8	gi|55376783|ref|YP_134634.1|	-	0.0071	13.9	53.0	0.01	13.4	49.5	2.5	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3584)
DUF5082	PF16888.5	gi|55376783|ref|YP_134634.1|	-	0.014	15.7	39.1	0.13	12.5	4.6	4.7	2	2	3	5	5	5	0	Domain	of	unknown	function	(DUF5082)
NPV_P10	PF05531.12	gi|55376783|ref|YP_134634.1|	-	0.015	15.7	27.4	0.29	11.6	1.9	6.0	3	1	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
PspA_IM30	PF04012.12	gi|55376783|ref|YP_134634.1|	-	0.016	14.8	52.8	0.3	10.6	18.9	3.7	2	2	1	3	3	3	0	PspA/IM30	family
Baculo_PEP_C	PF04513.12	gi|55376783|ref|YP_134634.1|	-	0.025	14.6	24.6	0.091	12.8	0.8	4.4	2	2	1	3	3	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Tropomyosin_1	PF12718.7	gi|55376783|ref|YP_134634.1|	-	0.029	14.5	55.1	1.7	8.8	24.7	4.1	2	2	0	2	2	2	0	Tropomyosin	like
Fez1	PF06818.15	gi|55376783|ref|YP_134634.1|	-	0.032	14.7	47.5	0.14	12.6	17.0	3.2	1	1	2	3	3	3	0	Fez1
FPP	PF05911.11	gi|55376783|ref|YP_134634.1|	-	0.048	11.9	40.1	0.0064	14.8	15.9	2.2	1	1	1	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
Filament	PF00038.21	gi|55376783|ref|YP_134634.1|	-	0.086	12.4	49.4	0.031	13.8	29.9	3.8	1	1	2	3	3	3	0	Intermediate	filament	protein
DHR10	PF18595.1	gi|55376783|ref|YP_134634.1|	-	0.13	12.4	69.3	0.1	12.7	8.8	5.5	1	1	3	5	5	5	0	Designed	helical	repeat	protein	10	domain
Med14	PF08638.11	gi|55376783|ref|YP_134634.1|	-	0.14	11.6	3.1	0.26	10.7	0.1	2.8	2	2	1	3	3	3	0	Mediator	complex	subunit	MED14
Sfi1_C	PF10638.9	gi|55376783|ref|YP_134634.1|	-	0.19	12.5	2.8	0.57	11.0	2.8	1.9	1	0	0	1	1	1	0	Spindle	body	associated	protein	C-terminus
COG2	PF06148.11	gi|55376783|ref|YP_134634.1|	-	0.2	11.8	35.6	0.52	10.4	2.2	5.2	2	2	4	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Seryl_tRNA_N	PF02403.22	gi|55376783|ref|YP_134634.1|	-	0.23	11.7	46.5	0.11	12.8	7.4	5.0	2	2	2	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
WEMBL	PF05701.11	gi|55376783|ref|YP_134634.1|	-	0.24	10.1	50.4	1.3	7.6	42.9	2.4	1	1	1	2	2	2	0	Weak	chloroplast	movement	under	blue	light
Cob_adeno_trans	PF01923.18	gi|55376783|ref|YP_134634.1|	-	0.25	11.5	27.2	0.98	9.5	4.6	4.2	1	1	3	4	4	4	0	Cobalamin	adenosyltransferase
MscS_porin	PF12795.7	gi|55376783|ref|YP_134634.1|	-	0.26	10.8	61.8	0.95	9.0	16.0	4.0	2	2	1	3	3	3	0	Mechanosensitive	ion	channel	porin	domain
JIP_LZII	PF16471.5	gi|55376783|ref|YP_134634.1|	-	0.32	11.2	38.2	0.42	10.8	0.2	6.9	5	1	2	7	7	7	0	JNK-interacting	protein	leucine	zipper	II
Prefoldin_2	PF01920.20	gi|55376783|ref|YP_134634.1|	-	0.39	10.7	49.7	4.8	7.2	0.6	7.8	3	3	5	8	8	8	0	Prefoldin	subunit
CLZ	PF16526.5	gi|55376783|ref|YP_134634.1|	-	0.46	10.9	37.3	0.62	10.5	1.4	6.7	2	2	5	7	7	7	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
APG6_N	PF17675.1	gi|55376783|ref|YP_134634.1|	-	0.54	10.8	65.8	1.6e+02	2.8	28.3	5.2	2	2	0	2	2	2	0	Apg6	coiled-coil	region
Snapin_Pallidin	PF14712.6	gi|55376783|ref|YP_134634.1|	-	0.8	10.2	32.3	5.5	7.5	1.1	4.7	3	1	2	5	5	5	0	Snapin/Pallidin
DUF4201	PF13870.6	gi|55376783|ref|YP_134634.1|	-	0.81	9.4	38.7	2.2	8.0	13.0	4.6	2	2	0	4	4	4	0	Domain	of	unknown	function	(DUF4201)
DUF745	PF05335.13	gi|55376783|ref|YP_134634.1|	-	0.85	9.3	35.7	0.047	13.4	11.5	3.4	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF745)
Fib_alpha	PF08702.10	gi|55376783|ref|YP_134634.1|	-	0.98	9.6	30.4	0.22	11.7	2.2	4.2	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
TolA_bind_tri	PF16331.5	gi|55376783|ref|YP_134634.1|	-	1.1	9.4	43.6	0.32	11.1	1.0	6.3	2	2	3	5	5	4	0	TolA	binding	protein	trimerisation
IFT57	PF10498.9	gi|55376783|ref|YP_134634.1|	-	1.1	8.1	35.0	0.065	12.2	7.8	3.4	1	1	1	3	3	3	0	Intra-flagellar	transport	protein	57
ATG16	PF08614.11	gi|55376783|ref|YP_134634.1|	-	1.3	9.2	63.3	5.7	7.1	26.9	4.3	2	2	0	2	2	2	0	Autophagy	protein	16	(ATG16)
HIP1_clath_bdg	PF16515.5	gi|55376783|ref|YP_134634.1|	-	1.5	9.5	52.1	2.6	8.7	9.0	4.6	2	2	2	4	4	4	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Jnk-SapK_ap_N	PF09744.9	gi|55376783|ref|YP_134634.1|	-	2.3	8.4	59.5	0.17	12.1	14.4	4.2	2	2	1	3	3	3	0	JNK_SAPK-associated	protein-1
DUF948	PF06103.11	gi|55376783|ref|YP_134634.1|	-	2.8	8.2	20.0	0.39	11.0	1.2	4.8	2	2	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Sec34	PF04136.15	gi|55376783|ref|YP_134634.1|	-	2.9	7.8	27.4	15	5.4	0.6	5.0	2	2	0	4	4	4	0	Sec34-like	family
FliD_N	PF02465.18	gi|55376783|ref|YP_134634.1|	-	2.9	8.6	22.7	14	6.4	0.2	5.1	2	2	2	4	4	4	0	Flagellar	hook-associated	protein	2	N-terminus
Spc24	PF08286.11	gi|55376783|ref|YP_134634.1|	-	3.1	8.1	50.1	0.92	9.8	6.8	6.9	2	2	3	5	5	5	0	Spc24	subunit	of	Ndc80
MCPsignal	PF00015.21	gi|55376783|ref|YP_134634.1|	-	3.7	7.3	22.4	0.25	11.1	3.2	3.7	2	2	1	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
BLOC1_2	PF10046.9	gi|55376783|ref|YP_134634.1|	-	3.7	7.9	33.7	3	8.2	2.2	5.3	2	2	3	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Alpha-2-MRAP_C	PF06401.11	gi|55376783|ref|YP_134634.1|	-	5	7.0	26.4	0.023	14.7	8.5	2.8	2	1	0	2	2	1	0	Alpha-2-macroglobulin	RAP,	C-terminal	domain
Rsa3	PF14615.6	gi|55376783|ref|YP_134634.1|	-	6.4	6.4	0.0	6.4	6.4	0.0	3.4	4	0	0	4	4	2	0	Ribosome-assembly	protein	3
PEARLI-4	PF05278.12	gi|55376783|ref|YP_134634.1|	-	6.6	6.2	31.2	0.67	9.5	0.7	4.1	2	2	2	4	4	4	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
Uds1	PF15456.6	gi|55376783|ref|YP_134634.1|	-	7.2	6.8	40.2	4.7	7.4	15.2	3.5	2	1	1	3	3	3	0	Up-regulated	During	Septation
Prominin	PF05478.11	gi|55376783|ref|YP_134634.1|	-	7.3	4.4	23.6	0.051	11.5	4.5	2.6	1	1	1	2	2	2	0	Prominin
VAPB_antitox	PF02697.14	gi|55376784|ref|YP_134635.1|	-	0.083	13.7	0.2	0.18	12.6	0.2	1.6	1	0	0	1	1	1	0	Putative	antitoxin
Zn_Tnp_IS1595	PF12760.7	gi|55376784|ref|YP_134635.1|	-	0.09	12.8	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|55376784|ref|YP_134635.1|	-	0.4	10.5	1.8	0.46	10.3	0.2	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
NAD_synthase	PF02540.17	gi|55376785|ref|YP_134636.1|	-	3e-32	111.7	0.0	3.4e-32	111.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
Amidohydro_1	PF01979.20	gi|55376787|ref|YP_134638.1|	-	1.5e-66	225.0	0.2	1.8e-66	224.8	0.2	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|55376787|ref|YP_134638.1|	-	2.1e-11	44.0	3.0	2.2e-11	43.9	0.4	2.0	2	0	0	2	2	2	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|55376787|ref|YP_134638.1|	-	0.0027	17.1	0.0	0.0044	16.4	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
BPD_transp_1	PF00528.22	gi|55376788|ref|YP_134639.1|	-	2.9e-16	59.7	5.9	2.9e-16	59.7	5.9	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Phosphonate-bd	PF12974.7	gi|55376790|ref|YP_134641.1|	-	2e-53	181.5	4.0	2.4e-53	181.2	4.0	1.0	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_3	PF00497.20	gi|55376790|ref|YP_134641.1|	-	0.029	13.8	0.0	0.21	11.0	0.0	2.0	2	0	0	2	2	2	0	Bacterial	extracellular	solute-binding	proteins,	family	3
DUF1543	PF07566.12	gi|55376790|ref|YP_134641.1|	-	0.11	12.3	0.1	19	5.1	0.0	2.6	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1543)
Ribonuc_L-PSP	PF01042.21	gi|55376791|ref|YP_134642.1|	-	1.6e-38	131.4	0.1	1.8e-38	131.2	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
NTP_transf_3	PF12804.7	gi|55376792|ref|YP_134643.1|	-	5.7e-38	130.8	0.4	7.1e-38	130.5	0.4	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|55376792|ref|YP_134643.1|	-	0.0036	17.1	0.3	0.0052	16.6	0.3	1.2	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF4225	PF13988.6	gi|55376792|ref|YP_134643.1|	-	0.033	13.8	0.1	0.042	13.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4225)
CTP_transf_3	PF02348.19	gi|55376792|ref|YP_134643.1|	-	0.043	13.7	0.0	0.053	13.4	0.0	1.1	1	0	0	1	1	1	0	Cytidylyltransferase
TusA	PF01206.17	gi|55376794|ref|YP_134645.1|	-	1.8e-15	56.5	0.0	2.1e-15	56.3	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|55376794|ref|YP_134645.1|	-	0.065	13.1	0.1	0.069	13.0	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
AIRS_C	PF02769.22	gi|55376795|ref|YP_134646.1|	-	3.4e-18	66.3	0.0	4.7e-18	65.8	0.0	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
XdhC_C	PF13478.6	gi|55376796|ref|YP_134647.1|	-	2.2e-35	121.8	2.3	1.6e-34	119.1	0.2	2.3	2	0	0	2	2	2	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.16	gi|55376796|ref|YP_134647.1|	-	1.4e-18	66.8	0.7	1.4e-18	66.8	0.7	3.5	3	0	0	3	3	3	1	XdhC	and	CoxI	family
Pyr_redox_2	PF07992.14	gi|55376796|ref|YP_134647.1|	-	0.00045	19.6	1.9	0.0032	16.7	0.1	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|55376796|ref|YP_134647.1|	-	0.00062	20.3	1.4	0.0089	16.6	0.0	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.21	gi|55376796|ref|YP_134647.1|	-	0.0063	16.6	1.2	0.016	15.3	0.2	2.1	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|55376796|ref|YP_134647.1|	-	0.0072	16.6	1.7	2.1	8.6	0.2	2.6	2	0	0	2	2	2	2	TrkA-N	domain
3HCDH_N	PF02737.18	gi|55376796|ref|YP_134647.1|	-	0.012	15.5	0.2	0.39	10.6	0.1	2.4	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|55376796|ref|YP_134647.1|	-	0.18	11.7	0.0	0.34	10.8	0.0	1.5	1	0	0	1	1	1	0	ATPsynthase	alpha/beta	subunit	N-term	extension
Peptidase_M23	PF01551.22	gi|55376796|ref|YP_134647.1|	-	1.2	9.4	3.8	2.4	8.4	0.2	2.7	2	1	0	2	2	2	0	Peptidase	family	M23
DsrH	PF04077.12	gi|55376797|ref|YP_134648.1|	-	4.7e-06	26.6	0.4	3.6e-05	23.8	0.4	1.9	1	1	0	1	1	1	1	DsrH	like	protein
SurA_N	PF09312.11	gi|55376797|ref|YP_134648.1|	-	0.0091	16.1	0.1	0.011	15.8	0.1	1.1	1	0	0	1	1	1	1	SurA	N-terminal	domain
DrsE	PF02635.15	gi|55376798|ref|YP_134649.1|	-	7.7e-10	39.2	0.0	8.6e-10	39.0	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE	PF02635.15	gi|55376799|ref|YP_134650.1|	-	4.3e-31	107.7	0.0	4.8e-31	107.6	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Ald_Xan_dh_C2	PF02738.18	gi|55376800|ref|YP_134651.1|	-	7.7e-148	493.4	0.1	1e-147	492.9	0.1	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|55376800|ref|YP_134651.1|	-	1.1e-10	41.8	0.0	2.4e-10	40.7	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Fer2_2	PF01799.20	gi|55376801|ref|YP_134652.1|	-	2.9e-33	113.7	4.3	4.3e-33	113.2	0.1	2.2	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|55376801|ref|YP_134652.1|	-	1.7e-09	37.5	0.9	1.7e-09	37.5	0.9	2.9	3	1	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|55376801|ref|YP_134652.1|	-	4e-06	26.8	0.7	1.1e-05	25.4	0.3	1.9	2	1	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|55376801|ref|YP_134652.1|	-	0.00025	21.0	1.3	0.0016	18.5	1.3	2.2	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|55376802|ref|YP_134653.1|	-	1.5e-146	489.1	2.5	2.4e-146	488.4	2.5	1.3	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|55376802|ref|YP_134653.1|	-	5.4e-23	81.4	1.4	1e-22	80.6	1.4	1.5	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Fer2_2	PF01799.20	gi|55376803|ref|YP_134654.1|	-	5.8e-29	99.9	0.0	1.1e-28	99.0	0.0	1.5	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|55376803|ref|YP_134654.1|	-	1.3e-05	25.1	1.1	1.3e-05	25.1	1.1	3.1	3	1	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|55376803|ref|YP_134654.1|	-	0.00085	19.3	0.2	0.0019	18.2	0.2	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Peptidase_M20	PF01546.28	gi|55376804|ref|YP_134655.1|	-	2.9e-32	112.1	0.5	7.5e-32	110.7	0.7	1.6	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|55376804|ref|YP_134655.1|	-	7.8e-08	32.2	0.0	1.6e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|55376804|ref|YP_134655.1|	-	0.00015	21.5	0.0	0.00026	20.8	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
Amidohydro_3	PF07969.11	gi|55376805|ref|YP_134656.1|	-	2.7e-27	96.4	2.8	7.6e-26	91.6	2.8	2.1	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|55376805|ref|YP_134656.1|	-	4.8e-13	49.1	0.0	7.3e-07	28.8	0.0	2.8	2	1	0	2	2	2	2	Amidohydrolase	family
Bmp	PF02608.14	gi|55376806|ref|YP_134657.1|	-	4.4e-42	144.1	0.0	5.5e-42	143.8	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
TAT_signal	PF10518.9	gi|55376806|ref|YP_134657.1|	-	0.065	13.1	2.1	0.14	12.1	2.1	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Bmp	PF02608.14	gi|55376807|ref|YP_134658.1|	-	1.8e-42	145.4	0.0	2.2e-42	145.1	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
ABC_tran	PF00005.27	gi|55376808|ref|YP_134659.1|	-	4.7e-47	160.0	0.0	5.6e-29	101.4	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|55376808|ref|YP_134659.1|	-	1.6e-09	38.0	1.5	0.00058	19.8	0.0	2.5	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|55376808|ref|YP_134659.1|	-	0.013	15.3	0.1	1.3	8.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|55376808|ref|YP_134659.1|	-	0.013	15.2	0.6	0.033	13.9	0.0	1.9	3	0	0	3	3	3	0	P-loop	containing	region	of	AAA	domain
AAA_27	PF13514.6	gi|55376808|ref|YP_134659.1|	-	0.024	14.2	0.0	0.044	13.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|55376808|ref|YP_134659.1|	-	0.038	13.9	0.1	0.35	10.8	0.0	2.1	2	0	0	2	2	2	0	RsgA	GTPase
AAA_15	PF13175.6	gi|55376808|ref|YP_134659.1|	-	0.071	12.8	0.0	0.38	10.4	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|55376808|ref|YP_134659.1|	-	0.079	13.5	0.0	0.14	12.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.18	gi|55376808|ref|YP_134659.1|	-	0.2	11.4	0.1	0.37	10.6	0.1	1.3	1	0	0	1	1	1	0	Bacterial	dnaA	protein
BPD_transp_2	PF02653.16	gi|55376809|ref|YP_134660.1|	-	1e-35	123.2	31.2	1e-35	123.2	31.2	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|55376810|ref|YP_134661.1|	-	1.4e-37	129.3	31.3	1.4e-37	129.3	31.3	1.3	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Bac_luciferase	PF00296.20	gi|55376811|ref|YP_134662.1|	-	6.6e-60	203.2	0.0	7.8e-60	202.9	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF3243	PF11588.8	gi|55376811|ref|YP_134662.1|	-	0.036	14.4	0.3	0.52	10.6	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3243)
Xan_ur_permease	PF00860.20	gi|55376812|ref|YP_134663.1|	-	8.5e-90	301.2	44.9	1.2e-89	300.8	44.9	1.2	1	0	0	1	1	1	1	Permease	family
PALP	PF00291.25	gi|55376813|ref|YP_134664.1|	-	2.8e-72	243.6	1.3	3.4e-72	243.3	1.3	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Amidohydro_1	PF01979.20	gi|55376814|ref|YP_134665.1|	-	1.3e-15	57.6	0.0	2.8e-15	56.5	0.0	1.5	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|55376814|ref|YP_134665.1|	-	2.2e-08	34.0	5.0	0.0016	18.0	0.0	3.0	3	0	0	3	3	3	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|55376815|ref|YP_134666.1|	-	3e-49	168.2	0.2	3.5e-49	168.0	0.2	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|55376815|ref|YP_134666.1|	-	8.7e-18	65.0	5.9	2.7e-13	50.2	2.5	2.2	1	1	0	2	2	2	2	Amidohydrolase	family
Rrf2	PF02082.20	gi|55376816|ref|YP_134667.1|	-	0.15	12.5	0.2	0.41	11.0	0.2	1.8	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|55376816|ref|YP_134667.1|	-	0.16	11.8	1.6	1.2	9.0	1.0	2.8	3	1	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|55376816|ref|YP_134667.1|	-	0.25	11.1	3.5	1.8	8.4	1.3	2.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
DUF1610	PF07754.11	gi|55376817|ref|YP_134668.1|	-	0.048	13.6	0.2	0.082	12.9	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_2	PF13240.6	gi|55376817|ref|YP_134668.1|	-	0.26	11.0	1.2	0.43	10.4	0.1	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|55376818|ref|YP_134669.1|	-	0.055	13.5	0.7	0.09	12.8	0.7	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
TMEM100	PF16311.5	gi|55376818|ref|YP_134669.1|	-	0.17	11.5	0.0	0.31	10.6	0.0	1.4	1	0	0	1	1	1	0	Transmembrane	protein	100
Zn_Tnp_IS1595	PF12760.7	gi|55376818|ref|YP_134669.1|	-	0.23	11.4	1.6	0.57	10.2	1.6	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF35_N	PF12172.8	gi|55376818|ref|YP_134669.1|	-	2.7	8.0	6.1	0.98	9.4	1.4	2.6	2	1	1	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
AMP-binding	PF00501.28	gi|55376820|ref|YP_134671.1|	-	9.2e-50	169.5	0.0	1.3e-49	168.9	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
Hemerythrin	PF01814.23	gi|55376820|ref|YP_134671.1|	-	5e-09	36.9	7.6	5e-09	36.9	7.6	2.4	3	0	0	3	3	3	1	Hemerythrin	HHE	cation	binding	domain
Pyridox_ox_2	PF12900.7	gi|55376821|ref|YP_134672.1|	-	2.6e-13	50.2	0.1	3.1e-13	49.9	0.1	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|55376821|ref|YP_134672.1|	-	0.00034	20.7	0.0	0.00046	20.3	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
SHOCT	PF09851.9	gi|55376822|ref|YP_134673.1|	-	3.8e-06	26.5	1.2	5.1e-06	26.1	1.2	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF4381	PF14316.6	gi|55376822|ref|YP_134673.1|	-	0.0011	19.3	0.0	0.0013	19.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4381)
GvpG	PF05120.12	gi|55376822|ref|YP_134673.1|	-	0.0034	17.4	0.8	0.0049	16.8	0.8	1.2	1	0	0	1	1	1	1	Gas	vesicle	protein	G
DUF1707	PF08044.11	gi|55376822|ref|YP_134673.1|	-	0.0091	16.0	0.3	0.014	15.4	0.3	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Cyt_c_ox_IV	PF12270.8	gi|55376822|ref|YP_134673.1|	-	0.031	14.4	0.8	0.041	14.0	0.8	1.2	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	IV
CdvA	PF18822.1	gi|55376822|ref|YP_134673.1|	-	0.054	13.3	0.1	0.062	13.1	0.1	1.1	1	0	0	1	1	1	0	CdvA-like	coiled-coil	domain
DUF2681	PF10883.8	gi|55376822|ref|YP_134673.1|	-	0.065	13.6	0.0	0.085	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2681)
PIG-P	PF08510.12	gi|55376822|ref|YP_134673.1|	-	0.099	12.6	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	PIG-P
GYF_2	PF14237.6	gi|55376822|ref|YP_134673.1|	-	0.15	11.9	0.7	0.18	11.7	0.0	1.5	2	0	0	2	2	2	0	GYF	domain	2
Methyltransf_25	PF13649.6	gi|55376823|ref|YP_134674.1|	-	1.5e-15	57.7	0.0	2.5e-15	57.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|55376823|ref|YP_134674.1|	-	5.6e-14	52.6	0.0	8.9e-14	51.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|55376823|ref|YP_134674.1|	-	2.1e-09	37.5	0.0	2.5e-09	37.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|55376823|ref|YP_134674.1|	-	6.1e-09	35.8	0.0	7.8e-09	35.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|55376823|ref|YP_134674.1|	-	3.8e-08	33.1	0.0	5.7e-08	32.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|55376823|ref|YP_134674.1|	-	5.7e-08	33.4	0.1	8.6e-08	32.8	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|55376823|ref|YP_134674.1|	-	0.00053	19.5	0.0	0.00054	19.4	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
DUF938	PF06080.12	gi|55376823|ref|YP_134674.1|	-	0.0068	16.2	0.0	0.0095	15.7	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF938)
MTS	PF05175.14	gi|55376823|ref|YP_134674.1|	-	0.0093	15.5	0.0	0.012	15.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Pox_MCEL	PF03291.16	gi|55376823|ref|YP_134674.1|	-	0.013	14.6	0.0	0.016	14.4	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
Methyltransf_9	PF08003.11	gi|55376823|ref|YP_134674.1|	-	0.025	13.5	0.0	0.032	13.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_24	PF13578.6	gi|55376823|ref|YP_134674.1|	-	0.03	15.3	0.1	0.077	14.0	0.1	1.7	1	1	1	2	2	2	0	Methyltransferase	domain
zf_Rg	PF17915.1	gi|55376824|ref|YP_134675.1|	-	0.43	10.0	8.9	1.1	8.8	0.6	2.9	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
RNHCP	PF12647.7	gi|55376824|ref|YP_134675.1|	-	0.56	10.2	8.3	0.11	12.5	2.4	2.3	2	1	0	2	2	2	0	RNHCP	domain
EamA	PF00892.20	gi|55376825|ref|YP_134676.1|	-	8.5e-39	132.9	36.8	1.9e-20	73.4	8.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
SLC35F	PF06027.12	gi|55376825|ref|YP_134676.1|	-	0.29	10.6	6.8	4.2	6.8	7.4	2.1	1	1	1	2	2	2	0	Solute	carrier	family	35
RPE65	PF03055.15	gi|55376826|ref|YP_134677.1|	-	1.8e-110	370.3	0.0	2.1e-110	370.1	0.0	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
Pyr_redox_2	PF07992.14	gi|55376827|ref|YP_134678.1|	-	1.1e-07	31.4	0.0	1.5e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|55376827|ref|YP_134678.1|	-	3.4e-06	26.6	0.8	0.0042	16.4	0.1	2.5	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|55376827|ref|YP_134678.1|	-	1.6e-05	24.2	2.0	5.7e-05	22.4	0.3	2.0	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|55376827|ref|YP_134678.1|	-	1.8e-05	24.0	0.9	3e-05	23.3	0.3	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|55376827|ref|YP_134678.1|	-	2e-05	24.0	0.7	3.6e-05	23.2	0.1	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|55376827|ref|YP_134678.1|	-	3.9e-05	23.2	1.1	9e-05	22.0	1.1	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|55376827|ref|YP_134678.1|	-	0.00059	20.0	0.3	0.0014	18.8	0.3	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|55376827|ref|YP_134678.1|	-	0.00088	18.1	0.1	0.0035	16.1	0.1	1.8	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|55376827|ref|YP_134678.1|	-	0.0033	16.7	0.0	0.0065	15.7	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.24	gi|55376827|ref|YP_134678.1|	-	0.01	15.4	15.1	0.012	15.2	2.2	3.2	1	1	1	3	3	3	0	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|55376827|ref|YP_134678.1|	-	0.037	13.1	0.3	0.074	12.1	0.0	1.6	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|55376827|ref|YP_134678.1|	-	4.2	7.3	6.7	5.3	7.0	0.2	2.9	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FecCD	PF01032.18	gi|55376828|ref|YP_134679.1|	-	6.3e-89	298.1	36.4	7.8e-89	297.7	36.4	1.1	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|55376828|ref|YP_134679.1|	-	0.00041	19.9	11.9	0.00041	19.9	11.9	2.6	2	1	0	3	3	3	1	ABC	3	transport	family
ABC_tran	PF00005.27	gi|55376829|ref|YP_134680.1|	-	2.2e-30	106.0	0.0	3.3e-30	105.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|55376829|ref|YP_134680.1|	-	1.2e-12	48.3	4.1	1.1e-05	25.4	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|55376829|ref|YP_134680.1|	-	2.2e-11	43.6	0.1	5.6e-06	25.9	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|55376829|ref|YP_134680.1|	-	1.4e-05	24.7	0.0	2.6e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|55376829|ref|YP_134680.1|	-	5.6e-05	23.4	1.7	0.00088	19.6	1.7	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|55376829|ref|YP_134680.1|	-	0.00017	21.7	0.2	0.00063	19.9	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|55376829|ref|YP_134680.1|	-	0.00018	21.3	0.1	0.00028	20.7	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|55376829|ref|YP_134680.1|	-	0.00035	19.5	0.6	0.48	9.2	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|55376829|ref|YP_134680.1|	-	0.00045	20.6	0.5	0.00091	19.6	0.5	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|55376829|ref|YP_134680.1|	-	0.00069	20.2	0.0	0.0013	19.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|55376829|ref|YP_134680.1|	-	0.0021	17.9	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.22	gi|55376829|ref|YP_134680.1|	-	0.003	17.2	0.0	0.0059	16.2	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|55376829|ref|YP_134680.1|	-	0.0043	16.4	0.0	0.0079	15.5	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|55376829|ref|YP_134680.1|	-	0.0072	16.2	0.4	0.013	15.4	0.1	1.6	2	0	0	2	2	1	1	RsgA	GTPase
NACHT	PF05729.12	gi|55376829|ref|YP_134680.1|	-	0.0098	15.8	0.2	0.02	14.8	0.0	1.6	2	0	0	2	2	1	1	NACHT	domain
AAA	PF00004.29	gi|55376829|ref|YP_134680.1|	-	0.018	15.4	0.1	0.039	14.4	0.1	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|55376829|ref|YP_134680.1|	-	0.019	14.4	0.1	0.46	9.9	0.2	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
MMR_HSR1	PF01926.23	gi|55376829|ref|YP_134680.1|	-	0.019	15.0	0.5	0.077	13.1	0.5	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ATP_bind_1	PF03029.17	gi|55376829|ref|YP_134680.1|	-	0.022	14.5	0.1	1.6	8.4	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.19	gi|55376829|ref|YP_134680.1|	-	0.029	14.0	0.1	0.064	12.8	0.1	1.6	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_25	PF13481.6	gi|55376829|ref|YP_134680.1|	-	0.031	13.9	1.1	0.087	12.4	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|55376829|ref|YP_134680.1|	-	0.034	14.2	0.0	0.085	12.9	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
NTPase_1	PF03266.15	gi|55376829|ref|YP_134680.1|	-	0.044	13.7	0.6	1.8	8.5	0.0	2.2	2	0	0	2	2	2	0	NTPase
ATPase_2	PF01637.18	gi|55376829|ref|YP_134680.1|	-	0.047	13.6	0.0	0.076	12.9	0.0	1.5	2	0	0	2	2	1	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|55376829|ref|YP_134680.1|	-	0.054	14.0	0.3	0.18	12.3	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|55376829|ref|YP_134680.1|	-	0.055	13.9	0.0	0.097	13.1	0.0	1.5	1	1	0	1	1	1	0	RNA	helicase
AAA_24	PF13479.6	gi|55376829|ref|YP_134680.1|	-	0.057	13.1	0.1	0.39	10.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|55376829|ref|YP_134680.1|	-	0.057	12.8	0.1	0.28	10.5	0.0	2.0	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MukB	PF04310.12	gi|55376829|ref|YP_134680.1|	-	0.06	13.1	1.8	0.52	10.1	0.1	2.5	3	0	0	3	3	3	0	MukB	N-terminal
Cytidylate_kin	PF02224.18	gi|55376829|ref|YP_134680.1|	-	0.061	13.0	0.1	0.15	11.8	0.1	1.6	1	1	0	1	1	1	0	Cytidylate	kinase
TsaE	PF02367.17	gi|55376829|ref|YP_134680.1|	-	0.071	13.1	0.1	0.2	11.6	0.0	1.7	2	0	0	2	2	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_28	PF13521.6	gi|55376829|ref|YP_134680.1|	-	0.085	13.1	0.1	0.18	12.0	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
KAP_NTPase	PF07693.14	gi|55376829|ref|YP_134680.1|	-	0.091	12.0	0.5	0.48	9.6	0.5	1.9	1	1	0	1	1	1	0	KAP	family	P-loop	domain
APS_kinase	PF01583.20	gi|55376829|ref|YP_134680.1|	-	0.094	12.6	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_7	PF12775.7	gi|55376829|ref|YP_134680.1|	-	0.16	11.5	0.0	0.25	10.8	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Peripla_BP_2	PF01497.18	gi|55376830|ref|YP_134681.1|	-	8.4e-17	61.5	0.0	1.2e-16	61.0	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
ADH_N	PF08240.12	gi|55376832|ref|YP_134682.1|	-	3.8e-27	94.3	1.0	1.2e-26	92.8	1.0	1.8	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|55376832|ref|YP_134682.1|	-	2.3e-23	82.6	1.0	4.5e-23	81.6	1.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|55376832|ref|YP_134682.1|	-	5.5e-06	26.0	0.9	9.8e-06	25.2	0.9	1.4	1	1	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N_assoc	PF13823.6	gi|55376832|ref|YP_134682.1|	-	8.7e-06	25.6	0.1	2.2e-05	24.3	0.1	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N_2	PF13602.6	gi|55376832|ref|YP_134682.1|	-	0.0013	19.8	0.1	0.0026	18.8	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|55376832|ref|YP_134682.1|	-	0.047	13.0	2.3	0.069	12.4	2.3	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|55376831|ref|YP_134683.1|	-	1.2e-18	67.4	3.8	2.3e-09	36.9	1.7	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|55376831|ref|YP_134683.1|	-	7.3e-14	51.7	0.9	1.6e-07	30.9	0.1	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|55376831|ref|YP_134683.1|	-	6.7e-11	41.5	0.1	2.6e-05	23.1	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|55376831|ref|YP_134683.1|	-	1.7e-09	37.4	0.7	6.2e-06	25.7	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|55376831|ref|YP_134683.1|	-	2.3e-09	37.3	0.6	0.00021	21.0	0.1	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|55376831|ref|YP_134683.1|	-	2.3e-07	30.3	2.0	9.3e-07	28.3	0.1	2.0	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|55376831|ref|YP_134683.1|	-	6.8e-06	25.7	2.0	2.2e-05	24.0	0.1	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|55376831|ref|YP_134683.1|	-	8.8e-06	25.9	0.0	2.1e-05	24.7	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|55376831|ref|YP_134683.1|	-	2e-05	23.9	0.2	0.00035	19.8	0.1	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|55376831|ref|YP_134683.1|	-	6.9e-05	22.9	0.2	0.21	11.6	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Thi4	PF01946.17	gi|55376831|ref|YP_134683.1|	-	0.00015	21.1	0.1	0.00025	20.3	0.1	1.5	1	1	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|55376831|ref|YP_134683.1|	-	0.00053	19.3	0.2	0.0013	18.1	0.0	1.6	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|55376831|ref|YP_134683.1|	-	0.0032	18.0	0.2	0.02	15.4	0.2	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|55376831|ref|YP_134683.1|	-	0.0052	16.0	0.2	2.2	7.4	0.0	2.1	2	0	0	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.12	gi|55376831|ref|YP_134683.1|	-	0.0073	15.4	0.4	0.029	13.4	0.1	1.8	1	1	0	2	2	2	1	Lycopene	cyclase	protein
XdhC_C	PF13478.6	gi|55376831|ref|YP_134683.1|	-	0.034	14.6	0.0	0.055	14.0	0.0	1.5	1	1	0	1	1	1	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.6	gi|55376831|ref|YP_134683.1|	-	0.13	12.7	0.0	0.22	12.0	0.0	1.6	1	1	0	1	1	1	0	Putative	NAD(P)-binding
ThuA	PF06283.11	gi|55376834|ref|YP_134685.1|	-	1.8e-33	116.5	0.3	2.2e-33	116.3	0.3	1.1	1	0	0	1	1	1	1	Trehalose	utilisation
Lactate_perm	PF02652.14	gi|55376835|ref|YP_134686.1|	-	1.4e-101	340.8	45.6	4.7e-53	180.7	24.5	2.2	2	0	0	2	2	2	2	L-lactate	permease
FAD-oxidase_C	PF02913.19	gi|55376836|ref|YP_134687.1|	-	4.5e-67	226.3	0.0	8.4e-67	225.4	0.0	1.5	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|55376836|ref|YP_134687.1|	-	1.4e-38	131.8	0.1	2.8e-38	130.8	0.1	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|55376836|ref|YP_134687.1|	-	8.5e-09	35.8	3.1	1.7e-08	34.9	3.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|55376836|ref|YP_134687.1|	-	4.7e-08	33.4	4.1	9.9e-08	32.3	4.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|55376836|ref|YP_134687.1|	-	2.2e-06	27.8	0.0	0.0019	18.4	0.0	2.6	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|55376836|ref|YP_134687.1|	-	0.00018	21.5	3.5	0.0045	17.1	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|55376836|ref|YP_134687.1|	-	0.00066	19.8	1.9	0.024	14.8	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|55376836|ref|YP_134687.1|	-	0.059	12.8	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_21	PF14697.6	gi|55376836|ref|YP_134687.1|	-	0.086	13.0	3.9	0.35	11.0	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|55376836|ref|YP_134687.1|	-	0.21	12.2	6.1	1.3	9.7	6.4	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
DUF2101	PF09874.9	gi|55376838|ref|YP_134689.1|	-	0.19	11.4	2.3	0.5	10.0	2.3	1.6	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2101)
HTH_20	PF12840.7	gi|55376839|ref|YP_134690.1|	-	6.8e-06	26.0	0.1	1.1e-05	25.4	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|55376839|ref|YP_134690.1|	-	0.0055	16.5	0.0	0.01	15.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|55376839|ref|YP_134690.1|	-	0.01	15.8	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_17	PF12728.7	gi|55376839|ref|YP_134690.1|	-	0.011	15.9	0.0	0.019	15.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376839|ref|YP_134690.1|	-	0.033	14.1	0.1	0.074	13.0	0.1	1.6	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|55376839|ref|YP_134690.1|	-	0.067	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Metallophos_2	PF12850.7	gi|55376840|ref|YP_134691.1|	-	1.4e-12	48.1	0.0	2.9e-06	27.6	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|55376840|ref|YP_134691.1|	-	4.7e-10	40.3	0.4	2.9e-08	34.4	0.3	2.1	2	0	0	2	2	2	1	Calcineurin-like	phosphoesterase
GlgS	PF08971.11	gi|55376840|ref|YP_134691.1|	-	0.077	13.0	0.0	0.21	11.7	0.0	1.7	1	0	0	1	1	1	0	Glycogen	synthesis	protein
PBC	PF03792.13	gi|55376840|ref|YP_134691.1|	-	0.21	11.3	0.0	0.34	10.6	0.0	1.2	1	0	0	1	1	1	0	PBC	domain
ADH_N	PF08240.12	gi|55376841|ref|YP_134692.1|	-	3e-31	107.5	3.0	6.5e-31	106.4	3.0	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|55376841|ref|YP_134692.1|	-	1.4e-21	76.8	0.3	2.8e-21	75.9	0.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|55376841|ref|YP_134692.1|	-	4.5e-06	27.7	0.8	7.2e-06	27.1	0.1	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.6	gi|55376841|ref|YP_134692.1|	-	0.038	13.9	0.5	0.06	13.2	0.5	1.3	1	0	0	1	1	1	0	NAD(P)H-binding
ADH_N_2	PF16884.5	gi|55376841|ref|YP_134692.1|	-	0.041	13.8	0.0	0.21	11.5	0.0	2.0	2	0	0	2	2	2	0	N-terminal	domain	of	oxidoreductase
DUF2318	PF10080.9	gi|55376841|ref|YP_134692.1|	-	0.14	12.3	1.4	0.49	10.5	0.0	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2318)
Peptidase_M48	PF01435.18	gi|55376842|ref|YP_134693.1|	-	3.2e-38	131.5	0.0	4e-38	131.2	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|55376842|ref|YP_134693.1|	-	3.7e-06	26.4	0.3	7.2e-06	25.4	0.0	1.7	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|55376842|ref|YP_134693.1|	-	0.061	13.2	0.0	0.089	12.7	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
Phage_holin_3_6	PF07332.11	gi|55376842|ref|YP_134693.1|	-	0.79	9.8	10.0	0.75	9.9	1.7	2.3	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
Peptidase_M19	PF01244.21	gi|55376843|ref|YP_134694.1|	-	0.14	11.3	0.0	0.17	11.0	0.0	1.1	1	0	0	1	1	1	0	Membrane	dipeptidase	(Peptidase	family	M19)
E1-E2_ATPase	PF00122.20	gi|55376843|ref|YP_134694.1|	-	0.66	9.5	4.6	0.14	11.6	0.9	1.8	2	0	0	2	2	2	0	E1-E2	ATPase
Aldo_ket_red	PF00248.21	gi|55376844|ref|YP_134695.1|	-	1.6e-55	188.4	0.0	6.6e-53	179.8	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
EamA	PF00892.20	gi|55376845|ref|YP_134696.1|	-	1.2e-36	125.9	38.1	2.8e-18	66.4	16.6	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|55376845|ref|YP_134696.1|	-	0.038	13.3	8.5	0.27	10.6	4.4	2.2	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
NAD_binding_10	PF13460.6	gi|55376846|ref|YP_134697.1|	-	2.7e-33	115.4	3.7	3.3e-33	115.1	3.7	1.1	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|55376846|ref|YP_134697.1|	-	1.5e-10	41.1	0.0	2.5e-10	40.3	0.0	1.5	1	1	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|55376846|ref|YP_134697.1|	-	2.3e-08	33.4	0.0	3.2e-08	32.9	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.21	gi|55376846|ref|YP_134697.1|	-	1.7e-06	27.7	0.0	2.1e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Semialdhyde_dh	PF01118.24	gi|55376846|ref|YP_134697.1|	-	5e-05	23.7	0.1	7.6e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|55376846|ref|YP_134697.1|	-	0.1	12.9	0.4	0.54	10.5	0.2	2.1	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
Bac_luciferase	PF00296.20	gi|55376847|ref|YP_134698.1|	-	7.3e-46	157.0	4.1	8.7e-46	156.8	1.2	1.9	1	1	1	2	2	2	1	Luciferase-like	monooxygenase
DUF2761	PF10959.8	gi|55376847|ref|YP_134698.1|	-	0.02	14.9	0.2	0.08	13.0	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2761)
Methyltransf_25	PF13649.6	gi|55376848|ref|YP_134699.1|	-	2.6e-13	50.5	0.0	4.1e-13	49.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|55376848|ref|YP_134699.1|	-	3.1e-10	40.6	0.1	6e-10	39.7	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|55376848|ref|YP_134699.1|	-	4.1e-09	36.5	0.0	9.8e-09	35.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|55376848|ref|YP_134699.1|	-	1.2e-07	31.4	0.0	1.6e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
TehB	PF03848.14	gi|55376848|ref|YP_134699.1|	-	3.8e-07	29.7	0.0	4.8e-07	29.4	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_31	PF13847.6	gi|55376848|ref|YP_134699.1|	-	3.9e-07	30.0	0.0	5.1e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|55376848|ref|YP_134699.1|	-	1.3e-05	24.8	0.0	1.7e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|55376848|ref|YP_134699.1|	-	7.3e-05	22.4	0.0	0.00011	21.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|55376848|ref|YP_134699.1|	-	0.00011	21.9	0.0	0.00016	21.4	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_12	PF08242.12	gi|55376848|ref|YP_134699.1|	-	0.00043	21.0	0.0	0.00091	19.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|55376848|ref|YP_134699.1|	-	0.058	13.1	0.0	0.082	12.6	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|55376848|ref|YP_134699.1|	-	0.08	12.3	0.0	0.11	11.9	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Met_10	PF02475.16	gi|55376848|ref|YP_134699.1|	-	0.089	12.5	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
DUF726	PF05277.12	gi|55376849|ref|YP_134700.1|	-	1.5e-14	53.7	0.0	2e-14	53.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF726)
DUF900	PF05990.12	gi|55376849|ref|YP_134700.1|	-	1.5e-11	44.2	0.0	1.9e-11	43.9	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
Abhydrolase_6	PF12697.7	gi|55376849|ref|YP_134700.1|	-	4.6e-05	24.1	4.6	7.4e-05	23.5	4.6	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Lipase	PF00151.19	gi|55376849|ref|YP_134700.1|	-	0.0093	15.3	0.0	0.014	14.8	0.0	1.1	1	0	0	1	1	1	1	Lipase
Tudor_4	PF18358.1	gi|55376849|ref|YP_134700.1|	-	0.023	14.3	0.1	0.082	12.5	0.0	1.9	2	0	0	2	2	2	0	Histone	methyltransferase	Tudor	domain
Lipase_2	PF01674.18	gi|55376849|ref|YP_134700.1|	-	0.043	13.3	0.0	0.076	12.5	0.0	1.3	1	0	0	1	1	1	0	Lipase	(class	2)
LCAT	PF02450.15	gi|55376849|ref|YP_134700.1|	-	0.18	10.9	0.0	0.23	10.6	0.0	1.1	1	0	0	1	1	1	0	Lecithin:cholesterol	acyltransferase
DUF3487	PF11990.8	gi|55376850|ref|YP_134701.1|	-	5.8	6.8	7.9	8.8	6.2	7.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF3267	PF11667.8	gi|55376851|ref|YP_134702.1|	-	7.5e-21	74.5	3.1	7.5e-21	74.5	3.1	1.9	2	0	0	2	2	2	1	Putative	zincin	peptidase
Metallophos	PF00149.28	gi|55376852|ref|YP_134703.1|	-	7.5e-13	49.4	0.1	1.1e-12	48.9	0.1	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|55376852|ref|YP_134703.1|	-	1.5e-07	31.8	0.0	3.8e-07	30.4	0.0	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
PP_kinase_C_1	PF17941.1	gi|55376853|ref|YP_134704.1|	-	1.6e-70	236.0	0.0	2.9e-70	235.1	0.0	1.5	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain	1
PP_kinase_C	PF13090.6	gi|55376853|ref|YP_134704.1|	-	1.2e-63	213.7	0.0	1.3e-61	207.0	0.0	2.5	2	1	0	2	2	2	2	Polyphosphate	kinase	C-terminal	domain	2
PP_kinase	PF02503.17	gi|55376853|ref|YP_134704.1|	-	4.7e-60	202.7	0.7	7.6e-60	202.0	0.7	1.4	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.6	gi|55376853|ref|YP_134704.1|	-	3.3e-35	120.6	0.1	9.7e-35	119.1	0.0	1.9	2	0	0	2	2	2	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.6	gi|55376853|ref|YP_134704.1|	-	5.7e-12	45.7	0.0	3.4e-06	27.0	0.1	2.7	3	0	0	3	3	3	2	PLD-like	domain
AIM24	PF01987.17	gi|55376854|ref|YP_134705.1|	-	1.2e-27	97.1	0.7	1.4e-27	96.9	0.7	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
Methyltransf_11	PF08241.12	gi|55376855|ref|YP_134706.1|	-	7.2e-16	58.6	0.0	5.6e-15	55.8	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|55376855|ref|YP_134706.1|	-	1.2e-12	48.3	0.0	5.6e-12	46.2	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|55376855|ref|YP_134706.1|	-	2.7e-12	46.8	0.0	3e-12	46.7	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|55376855|ref|YP_134706.1|	-	5.9e-10	39.1	0.0	9.9e-10	38.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|55376855|ref|YP_134706.1|	-	2.3e-09	37.0	0.0	4e-09	36.2	0.0	1.3	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|55376855|ref|YP_134706.1|	-	5.3e-09	36.7	0.0	1.5e-08	35.3	0.0	1.7	2	1	1	3	3	3	1	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|55376855|ref|YP_134706.1|	-	0.01	15.7	0.0	0.016	15.0	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
MatE	PF01554.18	gi|55376856|ref|YP_134707.1|	-	2e-64	216.1	33.9	8e-36	123.1	15.9	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|55376856|ref|YP_134707.1|	-	1.9e-05	24.8	40.7	0.0096	16.0	1.7	4.8	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
TetR_C_6	PF13977.6	gi|55376857|ref|YP_134708.1|	-	9.4e-15	54.8	1.9	9.4e-15	54.8	1.9	1.7	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|55376857|ref|YP_134708.1|	-	1.5e-13	50.3	0.9	2.7e-13	49.5	0.9	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_27	PF17935.1	gi|55376857|ref|YP_134708.1|	-	0.00058	19.9	0.1	0.0014	18.6	0.1	1.7	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|55376857|ref|YP_134708.1|	-	0.0013	19.0	1.6	0.0013	19.0	1.6	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|55376857|ref|YP_134708.1|	-	0.0019	18.4	0.2	0.0051	17.1	0.1	1.9	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|55376857|ref|YP_134708.1|	-	0.003	17.6	0.1	0.011	15.8	0.0	1.9	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|55376857|ref|YP_134708.1|	-	0.12	12.5	0.0	0.25	11.4	0.0	1.7	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_6	PF13977.6	gi|55376858|ref|YP_134709.1|	-	7.2e-23	81.0	1.0	7.2e-23	81.0	1.0	1.7	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|55376858|ref|YP_134709.1|	-	3.6e-10	39.5	0.5	6.3e-10	38.7	0.5	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|55376858|ref|YP_134709.1|	-	3.2e-05	24.1	0.0	9.8e-05	22.6	0.0	1.9	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_4	PF08359.11	gi|55376858|ref|YP_134709.1|	-	0.0066	16.6	0.0	0.011	15.8	0.0	1.3	1	0	0	1	1	1	1	YsiA-like	protein,	C-terminal	region
HAD_2	PF13419.6	gi|55376858|ref|YP_134709.1|	-	0.008	16.3	0.3	0.095	12.8	0.2	2.0	1	1	1	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
TetR_C_27	PF17935.1	gi|55376858|ref|YP_134709.1|	-	0.0091	16.0	0.2	0.043	13.9	0.1	2.3	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|55376858|ref|YP_134709.1|	-	0.018	15.7	0.0	0.049	14.2	0.0	1.7	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|55376858|ref|YP_134709.1|	-	0.034	13.7	0.0	0.062	12.8	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
TetR_C_29	PF17938.1	gi|55376858|ref|YP_134709.1|	-	0.04	14.0	0.0	0.063	13.4	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|55376858|ref|YP_134709.1|	-	0.052	13.7	0.1	0.14	12.3	0.0	1.7	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
PRC	PF05239.16	gi|55376860|ref|YP_134711.1|	-	4.6e-08	33.0	0.0	5.5e-08	32.8	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
Ribosomal_L21p	PF00829.21	gi|55376861|ref|YP_134712.1|	-	0.0051	17.0	0.1	0.21	11.9	0.0	2.5	2	0	0	2	2	2	1	Ribosomal	prokaryotic	L21	protein
YpM	PF09144.10	gi|55376861|ref|YP_134712.1|	-	0.044	13.9	0.1	0.54	10.4	0.1	2.2	2	0	0	2	2	2	0	Yersinia	pseudo-tuberculosis	mitogen
HTH_20	PF12840.7	gi|55376862|ref|YP_134713.1|	-	5e-14	52.1	0.0	8.4e-14	51.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376862|ref|YP_134713.1|	-	4e-06	26.6	0.0	7.5e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|55376862|ref|YP_134713.1|	-	1.6e-05	24.4	0.0	2.6e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|55376862|ref|YP_134713.1|	-	0.04	13.8	0.0	0.07	13.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.19	gi|55376862|ref|YP_134713.1|	-	0.095	12.3	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Crp_2	PF13545.6	gi|55376862|ref|YP_134713.1|	-	0.1	12.6	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
pXO2-72	PF17443.2	gi|55376862|ref|YP_134713.1|	-	0.16	12.2	0.0	0.25	11.6	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	pXO2-72
Sigma70_r4_2	PF08281.12	gi|55376862|ref|YP_134713.1|	-	0.17	11.5	0.0	0.31	10.7	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
CPBP	PF02517.16	gi|55376863|ref|YP_134714.1|	-	6.6e-12	45.6	18.7	8e-11	42.2	18.7	2.5	1	1	0	1	1	1	1	CPBP	intramembrane	metalloprotease
ADH_N	PF08240.12	gi|55376864|ref|YP_134715.1|	-	8.1e-28	96.5	0.5	3.2e-27	94.5	0.6	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_N_assoc	PF13823.6	gi|55376864|ref|YP_134715.1|	-	2.1e-09	37.2	1.7	5e-09	35.9	1.7	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N	PF00107.26	gi|55376864|ref|YP_134715.1|	-	4e-08	33.3	0.0	9e-08	32.2	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|55376864|ref|YP_134715.1|	-	0.033	13.5	0.0	0.052	12.8	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Glu_dehyd_C	PF16912.5	gi|55376864|ref|YP_134715.1|	-	0.04	13.4	0.0	0.21	11.1	0.0	2.0	2	0	0	2	2	2	0	Glucose	dehydrogenase	C-terminus
HI0933_like	PF03486.14	gi|55376864|ref|YP_134715.1|	-	0.078	11.7	0.2	0.26	10.0	0.2	1.7	2	0	0	2	2	2	0	HI0933-like	protein
zf-DBF	PF07535.12	gi|55376864|ref|YP_134715.1|	-	0.8	9.9	2.3	1.5	9.0	2.3	1.4	1	0	0	1	1	1	0	DBF	zinc	finger
zf_C2H2_6	PF18450.1	gi|55376865|ref|YP_134716.1|	-	0.13	12.0	0.8	0.22	11.3	0.8	1.4	1	0	0	1	1	1	0	Zinc	Finger	domain
cobW	PF02492.19	gi|55376866|ref|YP_134717.1|	-	9.3e-49	165.4	0.0	1.2e-48	165.0	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.14	gi|55376866|ref|YP_134717.1|	-	7.3e-24	83.5	0.0	1.2e-23	82.8	0.0	1.4	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
RsgA_GTPase	PF03193.16	gi|55376866|ref|YP_134717.1|	-	0.0015	18.4	0.1	0.027	14.4	0.0	2.1	2	0	0	2	2	2	1	RsgA	GTPase
AAA_16	PF13191.6	gi|55376866|ref|YP_134717.1|	-	0.0021	18.4	0.0	0.005	17.3	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
GTP_EFTU	PF00009.27	gi|55376866|ref|YP_134717.1|	-	0.0024	17.5	0.0	0.89	9.1	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
T2SSE	PF00437.20	gi|55376866|ref|YP_134717.1|	-	0.004	16.2	0.1	0.0059	15.7	0.1	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_33	PF13671.6	gi|55376866|ref|YP_134717.1|	-	0.0094	16.1	0.0	0.018	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|55376866|ref|YP_134717.1|	-	0.016	15.5	0.0	0.03	14.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TsaE	PF02367.17	gi|55376866|ref|YP_134717.1|	-	0.016	15.2	0.0	0.028	14.4	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_23	PF13476.6	gi|55376866|ref|YP_134717.1|	-	0.025	15.1	0.0	0.04	14.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|55376866|ref|YP_134717.1|	-	0.029	14.6	0.0	0.064	13.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
dNK	PF01712.19	gi|55376866|ref|YP_134717.1|	-	0.051	13.4	0.0	0.073	12.9	0.0	1.2	1	0	0	1	1	1	0	Deoxynucleoside	kinase
AAA_18	PF13238.6	gi|55376866|ref|YP_134717.1|	-	0.11	13.1	0.0	0.23	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|55376866|ref|YP_134717.1|	-	0.13	12.0	0.1	0.3	10.8	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.27	gi|55376866|ref|YP_134717.1|	-	0.14	12.6	0.0	0.24	11.9	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
ATXN-1_C	PF12547.8	gi|55376866|ref|YP_134717.1|	-	0.17	12.2	0.0	0.39	11.1	0.0	1.6	1	0	0	1	1	1	0	Capicua	transcriptional	repressor	modulator
MeaB	PF03308.16	gi|55376866|ref|YP_134717.1|	-	0.23	10.4	1.3	4.8	6.1	0.3	2.8	2	1	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Creatininase	PF02633.14	gi|55376867|ref|YP_134718.1|	-	3.3e-66	223.2	3.9	3.8e-66	223.0	3.9	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Molybdopterin	PF00384.22	gi|55376868|ref|YP_134719.1|	-	2.8e-84	283.6	0.0	3.6e-84	283.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|55376868|ref|YP_134719.1|	-	8.2e-34	116.0	0.0	1.5e-33	115.1	0.0	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.6	gi|55376868|ref|YP_134719.1|	-	5.7e-28	96.8	0.1	1.9e-27	95.1	0.3	1.9	2	0	0	2	2	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|55376868|ref|YP_134719.1|	-	7.1e-13	47.9	0.9	7.1e-13	47.9	0.9	2.6	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdop_Fe4S4	PF04879.16	gi|55376868|ref|YP_134719.1|	-	1.7e-09	37.5	0.1	5.8e-09	35.8	0.1	2.0	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_21	PF14697.6	gi|55376868|ref|YP_134719.1|	-	4.9e-09	36.2	8.9	4.9e-09	36.2	8.9	2.9	4	0	0	4	4	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|55376868|ref|YP_134719.1|	-	1.7e-08	34.9	16.8	3.6e-08	33.9	8.7	3.6	4	1	0	4	4	3	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|55376868|ref|YP_134719.1|	-	3.3e-07	29.8	20.6	0.00017	21.2	1.0	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|55376868|ref|YP_134719.1|	-	5.8e-06	26.2	12.2	5.9e-05	23.0	3.0	3.8	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|55376868|ref|YP_134719.1|	-	1.5e-05	25.8	7.0	0.0019	19.1	0.3	3.7	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|55376868|ref|YP_134719.1|	-	2.4e-05	24.4	9.2	2.4e-05	24.4	9.2	4.0	2	1	3	5	5	4	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|55376868|ref|YP_134719.1|	-	2.9e-05	24.4	8.0	2.9e-05	24.4	8.0	3.5	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|55376868|ref|YP_134719.1|	-	0.00014	21.9	13.1	0.00014	21.9	13.1	3.5	4	1	1	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|55376868|ref|YP_134719.1|	-	0.01	15.9	2.8	0.01	15.9	2.8	4.4	5	0	0	5	5	4	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|55376868|ref|YP_134719.1|	-	0.021	15.0	16.6	0.038	14.2	1.5	2.9	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
CDC48_N	PF02359.18	gi|55376868|ref|YP_134719.1|	-	0.05	13.8	0.0	0.13	12.4	0.0	1.7	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
NIPSNAP	PF07978.13	gi|55376868|ref|YP_134719.1|	-	0.076	13.3	0.0	0.24	11.7	0.0	1.8	1	0	0	1	1	1	0	NIPSNAP
Fer4_13	PF13370.6	gi|55376868|ref|YP_134719.1|	-	0.53	10.9	15.6	2.3	8.8	4.1	3.0	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_15	PF13459.6	gi|55376868|ref|YP_134719.1|	-	1.3	9.8	20.3	0.098	13.4	3.3	4.3	4	1	1	5	5	3	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|55376868|ref|YP_134719.1|	-	4.9	8.1	19.3	0.36	11.7	1.3	3.7	4	0	0	4	4	3	0	4Fe-4S	dicluster	domain
NADH_4Fe-4S	PF10589.9	gi|55376869|ref|YP_134720.1|	-	3.1e-18	65.6	0.0	5.9e-18	64.7	0.0	1.5	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Complex1_51K	PF01512.17	gi|55376869|ref|YP_134720.1|	-	3.8e-16	59.3	0.0	5.8e-16	58.7	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
DUF695	PF05117.12	gi|55376870|ref|YP_134721.1|	-	0.075	13.2	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF695)
Ribonuc_L-PSP	PF01042.21	gi|55376871|ref|YP_134722.1|	-	2e-37	127.9	0.0	2.3e-37	127.7	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.6	gi|55376871|ref|YP_134722.1|	-	0.024	14.8	0.0	0.03	14.4	0.0	1.3	1	0	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
EamA	PF00892.20	gi|55376872|ref|YP_134723.1|	-	2.1e-12	47.4	20.0	2.3e-12	47.3	20.0	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
DUF1129	PF06570.11	gi|55376872|ref|YP_134723.1|	-	7.6	6.0	8.7	6.6	6.2	1.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
TrkA_N	PF02254.18	gi|55376873|ref|YP_134724.1|	-	6.4e-27	94.1	2.0	1e-26	93.5	2.0	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|55376873|ref|YP_134724.1|	-	4.6e-14	52.1	7.5	4.6e-14	52.1	7.5	3.1	4	1	0	4	4	4	1	Ion	channel
Ion_trans	PF00520.31	gi|55376873|ref|YP_134724.1|	-	0.0016	17.7	0.2	0.003	16.8	0.2	1.5	1	1	0	1	1	1	1	Ion	transport	protein
tRNA-synt_2_TM	PF16995.5	gi|55376873|ref|YP_134724.1|	-	0.0042	16.8	5.6	0.0042	16.8	5.6	1.7	1	1	0	2	2	2	1	Transmembrane	region	of	lysyl-tRNA	synthetase
NmrA	PF05368.13	gi|55376873|ref|YP_134724.1|	-	0.036	13.6	0.2	0.053	13.1	0.2	1.2	1	0	0	1	1	1	0	NmrA-like	family
NAD_binding_7	PF13241.6	gi|55376873|ref|YP_134724.1|	-	0.9	10.0	3.7	0.2	12.1	0.3	1.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
BCCT	PF02028.17	gi|55376874|ref|YP_134725.1|	-	2.3e-132	441.9	43.0	2.7e-132	441.6	43.0	1.1	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
Pox_A9	PF04835.12	gi|55376874|ref|YP_134725.1|	-	0.016	15.3	1.6	0.093	12.9	0.0	2.5	2	0	0	2	2	2	0	A9	protein	conserved	region
GATase	PF00117.28	gi|55376875|ref|YP_134726.1|	-	3.2e-45	154.2	0.0	3.6e-45	154.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|55376875|ref|YP_134726.1|	-	2.4e-07	30.7	1.1	1.1e-06	28.5	1.1	1.8	1	1	0	1	1	1	1	Peptidase	C26
Peripla_BP_2	PF01497.18	gi|55376875|ref|YP_134726.1|	-	0.023	14.3	0.0	0.034	13.7	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
Big_11	PF18200.1	gi|55376875|ref|YP_134726.1|	-	0.13	12.1	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Bacterial	Ig-like	domain
Chorismate_bind	PF00425.18	gi|55376876|ref|YP_134727.1|	-	6.3e-99	330.7	0.0	2e-98	329.1	0.0	1.8	3	0	0	3	3	3	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|55376876|ref|YP_134727.1|	-	1.5e-09	38.2	0.0	3.7e-09	36.9	0.0	1.7	1	0	0	1	1	1	1	Anthranilate	synthase	component	I,	N	terminal	region
YqgC	PF17430.2	gi|55376876|ref|YP_134727.1|	-	0.049	13.7	0.1	0.14	12.2	0.1	1.8	1	0	0	1	1	1	0	Uncharacterized	YqgC-like
DUF3484	PF11983.8	gi|55376876|ref|YP_134727.1|	-	0.13	13.3	0.1	0.36	12.0	0.1	1.7	1	0	0	1	1	1	0	Membrane-attachment	and	polymerisation-promoting	switch
THF_DHG_CYH_C	PF02882.19	gi|55376877|ref|YP_134728.1|	-	4e-65	218.0	1.8	4e-65	218.0	1.8	1.5	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|55376877|ref|YP_134728.1|	-	4.6e-35	120.4	0.0	6.9e-35	119.8	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
zf-RING_7	PF02591.15	gi|55376878|ref|YP_134729.1|	-	0.036	14.3	1.5	0.069	13.3	0.1	2.0	2	1	0	2	2	2	0	C4-type	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|55376878|ref|YP_134729.1|	-	0.061	13.5	0.2	0.061	13.5	0.2	1.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF3268	PF11672.8	gi|55376878|ref|YP_134729.1|	-	0.061	13.6	1.1	0.11	12.8	0.1	1.7	1	1	1	2	2	2	0	zinc-finger-containing	domain
Hexapep	PF00132.24	gi|55376879|ref|YP_134730.1|	-	2.4e-10	39.7	6.2	2.5e-06	27.0	2.2	2.5	2	0	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.14	gi|55376879|ref|YP_134730.1|	-	0.00016	22.0	0.0	0.0003	21.1	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.6	gi|55376879|ref|YP_134730.1|	-	0.0022	17.7	1.3	0.0022	17.7	1.3	2.4	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
DUF1996	PF09362.10	gi|55376879|ref|YP_134730.1|	-	0.17	11.9	0.0	0.26	11.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1996)
SDF	PF00375.18	gi|55376880|ref|YP_134731.1|	-	5.8e-113	377.8	37.6	6.6e-113	377.7	37.6	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
EamA	PF00892.20	gi|55376881|ref|YP_134732.1|	-	1.5e-34	119.1	34.6	7.1e-18	65.1	19.8	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
RseC_MucC	PF04246.12	gi|55376881|ref|YP_134732.1|	-	0.0096	15.9	1.2	0.0096	15.9	1.2	3.9	2	2	3	5	5	5	1	Positive	regulator	of	sigma(E),	RseC/MucC
HAD	PF12710.7	gi|55376882|ref|YP_134733.1|	-	4.1e-11	43.6	0.1	6.6e-11	43.0	0.1	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|55376882|ref|YP_134733.1|	-	6.2e-07	29.9	0.2	9.5e-05	22.8	0.2	2.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|55376882|ref|YP_134733.1|	-	0.00036	20.7	0.4	0.038	14.1	0.4	3.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|55376882|ref|YP_134733.1|	-	0.0082	15.6	0.0	0.14	11.5	0.0	2.1	2	0	0	2	2	2	1	Putative	Phosphatase
UMPH-1	PF05822.12	gi|55376882|ref|YP_134733.1|	-	0.048	13.2	0.0	0.069	12.6	0.0	1.3	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
Ribonuc_L-PSP	PF01042.21	gi|55376883|ref|YP_134734.1|	-	1.8e-39	134.5	0.0	2e-39	134.4	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
adh_short_C2	PF13561.6	gi|55376884|ref|YP_134735.1|	-	9.7e-61	205.3	0.2	1.1e-60	205.1	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|55376884|ref|YP_134735.1|	-	9.7e-50	168.7	0.4	1.2e-49	168.5	0.4	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|55376884|ref|YP_134735.1|	-	7.5e-12	45.5	0.3	1.2e-11	44.9	0.3	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|55376884|ref|YP_134735.1|	-	3.8e-05	23.3	0.3	0.00021	20.8	0.2	2.1	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|55376884|ref|YP_134735.1|	-	0.00065	19.6	1.1	0.00095	19.1	0.5	1.5	1	1	1	2	2	2	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|55376884|ref|YP_134735.1|	-	0.022	13.9	0.0	0.038	13.1	0.0	1.4	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|55376884|ref|YP_134735.1|	-	0.041	13.0	0.0	0.075	12.2	0.0	1.4	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
EccE	PF11203.8	gi|55376884|ref|YP_134735.1|	-	0.064	13.6	2.3	1.1	9.6	0.2	2.2	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
3HCDH_N	PF02737.18	gi|55376884|ref|YP_134735.1|	-	0.068	13.1	0.3	0.15	11.9	0.0	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
MR_MLE_C	PF13378.6	gi|55376885|ref|YP_134736.1|	-	1.6e-49	168.4	0.2	2.7e-49	167.7	0.2	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|55376885|ref|YP_134736.1|	-	2.7e-16	59.8	0.0	7e-16	58.5	0.0	1.7	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
PmbA_TldD	PF01523.16	gi|55376885|ref|YP_134736.1|	-	0.15	11.9	0.0	0.38	10.5	0.0	1.6	2	0	0	2	2	2	0	Putative	modulator	of	DNA	gyrase
DHNA	PF04038.12	gi|55376885|ref|YP_134736.1|	-	0.16	12.5	0.1	1.1	9.7	0.1	2.2	2	0	0	2	2	2	0	Dihydroneopterin	aldolase
GHL10	PF02638.15	gi|55376886|ref|YP_134737.1|	-	0.16	11.1	0.0	0.28	10.2	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase-like	10
BPD_transp_1	PF00528.22	gi|55376887|ref|YP_134738.1|	-	3.7e-16	59.4	17.5	3.7e-16	59.4	17.5	1.8	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|55376888|ref|YP_134739.1|	-	2.5e-20	73.0	15.1	2.5e-20	73.0	15.1	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|55376889|ref|YP_134740.1|	-	2.4e-40	139.4	0.1	3.5e-40	138.9	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|55376889|ref|YP_134740.1|	-	1.1e-36	127.2	0.0	1.6e-36	126.6	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|55376889|ref|YP_134740.1|	-	2.2e-05	24.0	0.1	0.19	11.1	0.1	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|55376889|ref|YP_134740.1|	-	0.00086	19.1	0.0	0.0019	18.0	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|55376889|ref|YP_134740.1|	-	0.11	12.4	0.5	0.25	11.3	0.5	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Creatininase	PF02633.14	gi|55376890|ref|YP_134741.1|	-	1.5e-61	207.9	0.3	1.7e-61	207.7	0.3	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
ABC_tran	PF00005.27	gi|55376891|ref|YP_134742.1|	-	4.5e-32	111.4	0.0	8e-32	110.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|55376891|ref|YP_134742.1|	-	9.8e-11	41.7	0.0	2.9e-10	40.2	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
OB_MalK	PF17912.1	gi|55376891|ref|YP_134742.1|	-	3.9e-09	37.2	0.1	2.7e-08	34.5	0.0	2.6	3	0	0	3	3	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|55376891|ref|YP_134742.1|	-	7.7e-07	29.2	0.0	0.042	13.7	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|55376891|ref|YP_134742.1|	-	3.3e-05	24.1	0.0	0.00012	22.3	0.0	2.0	1	0	0	1	1	1	1	TOBE	domain
SMC_N	PF02463.19	gi|55376891|ref|YP_134742.1|	-	5.4e-05	22.7	1.4	0.0004	19.9	1.4	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|55376891|ref|YP_134742.1|	-	0.0011	19.4	0.4	0.0028	18.1	0.4	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|55376891|ref|YP_134742.1|	-	0.0016	18.7	0.1	0.0051	17.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|55376891|ref|YP_134742.1|	-	0.0017	18.3	0.0	0.0047	16.9	0.0	1.7	1	0	0	1	1	1	1	RsgA	GTPase
Rad17	PF03215.15	gi|55376891|ref|YP_134742.1|	-	0.0022	18.0	0.0	0.0032	17.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
CysA_C_terminal	PF17850.1	gi|55376891|ref|YP_134742.1|	-	0.0067	17.0	2.7	0.1	13.2	0.0	3.6	4	0	0	4	4	4	1	CysA	C-terminal	regulatory	domain
AAA_28	PF13521.6	gi|55376891|ref|YP_134742.1|	-	0.01	16.1	0.4	0.13	12.5	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
NTPase_1	PF03266.15	gi|55376891|ref|YP_134742.1|	-	0.013	15.5	0.4	0.18	11.7	0.1	2.2	2	0	0	2	2	2	0	NTPase
AAA_25	PF13481.6	gi|55376891|ref|YP_134742.1|	-	0.021	14.4	0.0	0.73	9.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|55376891|ref|YP_134742.1|	-	0.022	15.2	0.6	0.13	12.7	0.6	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|55376891|ref|YP_134742.1|	-	0.029	14.1	0.1	0.064	13.0	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|55376891|ref|YP_134742.1|	-	0.095	12.1	0.4	0.79	9.1	0.0	2.1	2	0	0	2	2	2	0	PhoH-like	protein
AAA_29	PF13555.6	gi|55376891|ref|YP_134742.1|	-	0.095	12.5	0.0	0.21	11.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATPase_2	PF01637.18	gi|55376891|ref|YP_134742.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_33	PF13671.6	gi|55376891|ref|YP_134742.1|	-	0.11	12.6	0.9	0.23	11.6	0.9	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|55376891|ref|YP_134742.1|	-	0.11	12.1	0.0	0.86	9.2	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|55376891|ref|YP_134742.1|	-	0.12	12.9	0.1	0.44	11.0	0.0	1.8	1	1	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|55376891|ref|YP_134742.1|	-	0.15	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IclR	PF01614.18	gi|55376892|ref|YP_134743.1|	-	1.4e-32	112.2	0.0	9.5e-32	109.5	0.0	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|55376892|ref|YP_134743.1|	-	9.6e-10	38.1	0.1	6.6e-09	35.4	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376892|ref|YP_134743.1|	-	8.7e-05	22.3	0.3	0.0015	18.4	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|55376892|ref|YP_134743.1|	-	0.00048	19.9	0.0	0.0027	17.5	0.0	2.3	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|55376892|ref|YP_134743.1|	-	0.0017	18.2	0.0	0.006	16.5	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|55376892|ref|YP_134743.1|	-	0.0027	17.6	0.0	0.0052	16.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|55376892|ref|YP_134743.1|	-	0.0037	17.3	0.0	0.011	15.8	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|55376892|ref|YP_134743.1|	-	0.015	14.9	0.0	0.039	13.5	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Bombolitin	PF08096.11	gi|55376892|ref|YP_134743.1|	-	0.039	14.2	1.4	0.83	10.1	0.1	2.4	2	0	0	2	2	2	0	Bombolitin	family
Rrf2	PF02082.20	gi|55376892|ref|YP_134743.1|	-	0.069	13.5	0.0	0.18	12.2	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
DUF742	PF05331.11	gi|55376892|ref|YP_134743.1|	-	0.082	12.7	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
Diacid_rec	PF05651.13	gi|55376892|ref|YP_134743.1|	-	0.085	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	sugar	diacid	recognition
Phage_CI_repr	PF07022.13	gi|55376892|ref|YP_134743.1|	-	0.17	12.0	0.0	0.41	10.8	0.0	1.6	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
IclR	PF01614.18	gi|55376893|ref|YP_134744.1|	-	3.9e-29	101.1	0.0	1.5e-28	99.2	0.0	1.9	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|55376893|ref|YP_134744.1|	-	4e-07	29.7	0.0	1.1e-06	28.3	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|55376893|ref|YP_134744.1|	-	0.00031	20.5	0.0	0.00061	19.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|55376893|ref|YP_134744.1|	-	0.0015	18.5	0.0	0.0053	16.8	0.0	2.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376893|ref|YP_134744.1|	-	0.0072	16.2	0.2	0.045	13.6	0.0	2.3	3	0	0	3	3	3	1	MarR	family
HTH_24	PF13412.6	gi|55376893|ref|YP_134744.1|	-	0.0095	15.5	0.0	0.016	14.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|55376893|ref|YP_134744.1|	-	0.011	15.6	0.0	0.19	11.7	0.0	2.3	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|55376893|ref|YP_134744.1|	-	0.013	16.0	0.1	0.17	12.4	0.1	2.7	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.12	gi|55376893|ref|YP_134744.1|	-	0.015	15.0	0.2	0.061	13.1	0.1	2.0	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|55376893|ref|YP_134744.1|	-	0.024	14.5	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_45	PF14947.6	gi|55376893|ref|YP_134744.1|	-	0.12	12.3	0.0	0.29	11.1	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
DUF4148	PF13663.6	gi|55376893|ref|YP_134744.1|	-	0.13	12.5	0.0	0.29	11.3	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4148)
SBP_bac_8	PF13416.6	gi|55376895|ref|YP_134746.1|	-	2.9e-18	66.7	1.7	4.3e-18	66.1	1.7	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|55376895|ref|YP_134746.1|	-	4.2e-08	32.9	2.0	2.4e-07	30.5	2.0	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|55376895|ref|YP_134746.1|	-	0.00035	20.4	0.0	0.0061	16.3	0.0	2.6	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
UCR_Fe-S_N	PF10399.9	gi|55376895|ref|YP_134746.1|	-	0.0074	15.6	0.9	0.0074	15.6	0.9	2.1	2	0	0	2	2	2	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.9	gi|55376895|ref|YP_134746.1|	-	0.22	11.4	9.3	0.44	10.5	9.3	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|55376896|ref|YP_134747.1|	-	4.6e-33	114.6	0.0	8.4e-33	113.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|55376896|ref|YP_134747.1|	-	2.7e-24	85.1	0.8	1.5e-23	82.8	0.1	2.5	3	0	0	3	3	3	1	TOBE	domain
AAA_21	PF13304.6	gi|55376896|ref|YP_134747.1|	-	1.9e-05	24.6	0.1	0.031	14.1	0.1	2.5	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|55376896|ref|YP_134747.1|	-	0.00039	20.4	0.0	0.00081	19.4	0.0	1.5	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_22	PF13401.6	gi|55376896|ref|YP_134747.1|	-	0.0013	19.1	0.3	0.0049	17.1	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|55376896|ref|YP_134747.1|	-	0.0014	18.1	0.0	0.073	12.5	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|55376896|ref|YP_134747.1|	-	0.0062	16.9	0.1	0.0097	16.3	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|55376896|ref|YP_134747.1|	-	0.014	15.8	0.0	0.033	14.6	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
G-alpha	PF00503.20	gi|55376896|ref|YP_134747.1|	-	0.02	14.1	0.0	0.027	13.6	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
RsgA_GTPase	PF03193.16	gi|55376896|ref|YP_134747.1|	-	0.023	14.6	0.1	0.049	13.5	0.1	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_5	PF07728.14	gi|55376896|ref|YP_134747.1|	-	0.034	14.2	0.0	0.084	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|55376896|ref|YP_134747.1|	-	0.034	14.6	0.3	0.67	10.4	0.1	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF1905	PF08922.11	gi|55376896|ref|YP_134747.1|	-	0.042	13.9	0.0	0.12	12.5	0.0	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
AAA_29	PF13555.6	gi|55376896|ref|YP_134747.1|	-	0.057	13.2	0.1	0.13	12.0	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP-synt_ab	PF00006.25	gi|55376896|ref|YP_134747.1|	-	0.074	12.7	0.0	0.074	12.7	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Mg_chelatase	PF01078.21	gi|55376896|ref|YP_134747.1|	-	0.076	12.4	0.0	1.9	7.8	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_23	PF13476.6	gi|55376896|ref|YP_134747.1|	-	0.14	12.6	0.1	0.58	10.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|55376896|ref|YP_134747.1|	-	0.15	12.6	0.0	0.35	11.4	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
BPD_transp_1	PF00528.22	gi|55376898|ref|YP_134749.1|	-	1.7e-14	53.9	7.0	2.1e-14	53.7	7.0	1.0	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|55376899|ref|YP_134750.1|	-	4.9e-17	62.3	19.9	4.9e-17	62.3	19.9	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ADH_N	PF08240.12	gi|55376900|ref|YP_134751.1|	-	1.8e-27	95.4	1.0	3.4e-27	94.5	0.4	1.7	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|55376900|ref|YP_134751.1|	-	4.6e-27	94.6	0.1	7.6e-27	93.8	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|55376900|ref|YP_134751.1|	-	0.00033	20.0	0.8	0.00053	19.3	0.8	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|55376900|ref|YP_134751.1|	-	0.0034	16.8	0.2	0.0054	16.1	0.2	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ADH_zinc_N_2	PF13602.6	gi|55376900|ref|YP_134751.1|	-	0.0071	17.4	0.1	0.016	16.3	0.0	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Urocanase	PF01175.18	gi|55376900|ref|YP_134751.1|	-	0.011	15.4	0.3	0.015	15.0	0.3	1.3	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
ELFV_dehydrog	PF00208.21	gi|55376900|ref|YP_134751.1|	-	0.028	14.1	0.2	0.048	13.4	0.2	1.3	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Aldedh	PF00171.22	gi|55376901|ref|YP_134752.1|	-	3.9e-163	543.3	0.0	4.8e-163	542.9	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
MFS_1	PF07690.16	gi|55376902|ref|YP_134753.1|	-	8.7e-45	153.2	68.9	5.8e-37	127.4	43.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|55376902|ref|YP_134753.1|	-	1.1e-06	27.8	19.9	0.00036	19.5	8.1	2.4	1	1	1	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|55376902|ref|YP_134753.1|	-	0.027	13.3	29.5	0.085	11.7	10.6	2.5	2	1	0	2	2	2	0	Sugar	(and	other)	transporter
CN_hydrolase	PF00795.22	gi|55376903|ref|YP_134754.1|	-	1.3e-39	136.1	0.0	1.6e-39	135.8	0.0	1.1	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
MTH865	PF07747.11	gi|55376903|ref|YP_134754.1|	-	0.063	13.1	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	MTH865-like	family
HTH_10	PF04967.12	gi|55376905|ref|YP_134756.1|	-	4.4e-16	58.4	0.0	7.3e-16	57.7	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|55376905|ref|YP_134756.1|	-	0.00043	20.2	0.0	0.0006	19.7	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|55376905|ref|YP_134756.1|	-	0.017	14.6	0.0	0.049	13.2	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TctA	PF01970.16	gi|55376906|ref|YP_134757.1|	-	0.0015	17.4	1.3	0.0017	17.2	1.3	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
DHFR_1	PF00186.19	gi|55376907|ref|YP_134758.1|	-	5.7e-51	172.4	0.0	6.8e-51	172.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
GCV_T	PF01571.21	gi|55376909|ref|YP_134760.1|	-	2.5e-47	161.4	0.0	3.3e-47	161.0	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|55376909|ref|YP_134760.1|	-	0.00016	21.5	0.0	0.00036	20.4	0.0	1.7	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
MTHFR	PF02219.17	gi|55376910|ref|YP_134761.1|	-	1.2e-13	51.1	0.0	3e-13	49.8	0.0	1.6	1	1	0	1	1	1	1	Methylenetetrahydrofolate	reductase
AstE_AspA	PF04952.14	gi|55376912|ref|YP_134763.1|	-	2.2e-43	148.4	0.1	2.8e-43	148.1	0.1	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
ATP-synt_ab_Xtn	PF16886.5	gi|55376912|ref|YP_134763.1|	-	0.0025	17.7	0.0	0.005	16.7	0.0	1.5	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
GCV_T	PF01571.21	gi|55376913|ref|YP_134764.1|	-	1.4e-81	273.6	0.1	2.1e-81	273.1	0.1	1.3	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|55376913|ref|YP_134764.1|	-	2e-50	172.4	0.5	2e-50	172.4	0.5	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.11	gi|55376913|ref|YP_134764.1|	-	8.2e-15	54.5	0.0	2.5e-14	53.0	0.0	1.8	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAO_M	PF16350.5	gi|55376913|ref|YP_134764.1|	-	2.2e-13	50.3	0.1	5.8e-13	49.0	0.1	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
FAD_binding_2	PF00890.24	gi|55376913|ref|YP_134764.1|	-	1.5e-06	27.6	0.1	3.4e-06	26.4	0.1	1.6	1	0	0	1	1	1	1	FAD	binding	domain
SoxG	PF04268.12	gi|55376913|ref|YP_134764.1|	-	3e-06	27.5	0.0	5.9e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	Sarcosine	oxidase,	gamma	subunit	family
Pyr_redox_2	PF07992.14	gi|55376913|ref|YP_134764.1|	-	6.5e-06	25.6	0.6	0.0021	17.4	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|55376913|ref|YP_134764.1|	-	7.1e-06	26.5	0.4	0.0037	17.8	0.1	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|55376913|ref|YP_134764.1|	-	2.7e-05	24.3	0.1	0.0001	22.5	0.0	2.1	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|55376913|ref|YP_134764.1|	-	0.0022	17.3	0.5	0.15	11.3	0.2	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|55376913|ref|YP_134764.1|	-	0.0087	16.3	0.0	0.032	14.5	0.0	2.0	2	0	0	2	2	2	1	TrkA-N	domain
GMC_oxred_N	PF00732.19	gi|55376913|ref|YP_134764.1|	-	0.01	15.3	0.2	0.025	13.9	0.0	1.7	2	0	0	2	2	2	1	GMC	oxidoreductase
ThiF	PF00899.21	gi|55376913|ref|YP_134764.1|	-	0.015	14.7	0.1	0.032	13.6	0.1	1.5	1	0	0	1	1	1	0	ThiF	family
HI0933_like	PF03486.14	gi|55376913|ref|YP_134764.1|	-	0.016	13.9	0.2	0.23	10.1	0.0	2.0	2	0	0	2	2	2	0	HI0933-like	protein
ApbA	PF02558.16	gi|55376913|ref|YP_134764.1|	-	0.018	14.7	0.1	0.033	13.8	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Lycopene_cycl	PF05834.12	gi|55376913|ref|YP_134764.1|	-	0.024	13.7	1.6	0.19	10.7	0.1	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|55376913|ref|YP_134764.1|	-	0.037	14.0	0.3	10	6.1	0.0	3.2	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FAD_oxidored	PF12831.7	gi|55376913|ref|YP_134764.1|	-	0.19	11.0	0.7	0.87	8.9	0.7	2.0	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
Ring_hydroxyl_A	PF00848.19	gi|55376914|ref|YP_134765.1|	-	2.6e-16	60.2	11.9	1.2e-14	54.8	11.9	2.1	1	1	0	1	1	1	1	Ring	hydroxylating	alpha	subunit	(catalytic	domain)
Rieske	PF00355.26	gi|55376914|ref|YP_134765.1|	-	7.1e-16	57.9	0.0	1.6e-15	56.8	0.0	1.6	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|55376914|ref|YP_134765.1|	-	0.014	15.4	0.0	0.037	13.9	0.0	1.7	2	0	0	2	2	2	0	Rieske-like	[2Fe-2S]	domain
Phage_T7_tail	PF03906.14	gi|55376915|ref|YP_134766.1|	-	0.034	13.8	0.1	0.07	12.8	0.1	1.5	1	1	0	1	1	1	0	Phage	T7	tail	fibre	protein
GCV_T	PF01571.21	gi|55376916|ref|YP_134767.1|	-	1.1e-76	257.7	0.0	1.8e-76	256.9	0.0	1.4	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|55376916|ref|YP_134767.1|	-	4.7e-38	131.7	3.1	1.8e-37	129.7	2.6	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.11	gi|55376916|ref|YP_134767.1|	-	1.4e-16	60.2	0.1	4.4e-16	58.6	0.0	2.0	2	0	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAO_M	PF16350.5	gi|55376916|ref|YP_134767.1|	-	1.1e-12	48.1	0.2	2.9e-12	46.7	0.2	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
NAD_binding_8	PF13450.6	gi|55376916|ref|YP_134767.1|	-	5.1e-06	26.6	0.1	3.2e-05	24.1	0.1	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|55376916|ref|YP_134767.1|	-	6.2e-05	22.3	0.7	0.00016	20.9	0.7	1.8	1	1	0	1	1	1	1	FAD	binding	domain
SoxG	PF04268.12	gi|55376916|ref|YP_134767.1|	-	0.00025	21.2	0.0	0.0057	16.8	0.0	2.3	1	1	0	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
Pyr_redox_2	PF07992.14	gi|55376916|ref|YP_134767.1|	-	0.00045	19.5	0.2	0.0014	17.9	0.1	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|55376916|ref|YP_134767.1|	-	0.00064	19.4	0.0	0.0012	18.5	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_3	PF13738.6	gi|55376916|ref|YP_134767.1|	-	0.00076	18.8	0.2	0.0064	15.8	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|55376916|ref|YP_134767.1|	-	0.00093	19.7	0.6	0.0055	17.2	0.5	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GMC_oxred_N	PF00732.19	gi|55376916|ref|YP_134767.1|	-	0.0026	17.2	0.0	0.0044	16.4	0.0	1.3	1	0	0	1	1	1	1	GMC	oxidoreductase
ThiF	PF00899.21	gi|55376916|ref|YP_134767.1|	-	0.004	16.5	0.0	0.0072	15.7	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
TrkA_N	PF02254.18	gi|55376916|ref|YP_134767.1|	-	0.015	15.5	0.1	0.032	14.5	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Lycopene_cycl	PF05834.12	gi|55376916|ref|YP_134767.1|	-	0.016	14.3	0.5	0.025	13.6	0.5	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Shikimate_DH	PF01488.20	gi|55376916|ref|YP_134767.1|	-	0.034	14.2	0.0	0.068	13.2	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Thi4	PF01946.17	gi|55376916|ref|YP_134767.1|	-	0.057	12.6	0.1	0.11	11.7	0.1	1.4	1	0	0	1	1	1	0	Thi4	family
HI0933_like	PF03486.14	gi|55376916|ref|YP_134767.1|	-	0.1	11.2	0.1	1.9	7.1	0.2	2.1	2	0	0	2	2	2	0	HI0933-like	protein
PALP	PF00291.25	gi|55376917|ref|YP_134768.1|	-	1.3e-80	271.0	4.7	2.2e-80	270.2	4.7	1.3	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|55376917|ref|YP_134768.1|	-	5.8e-08	32.4	0.3	1.9e-07	30.7	0.3	1.9	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.6	gi|55376917|ref|YP_134768.1|	-	4.5e-06	27.2	0.1	1.5e-05	25.5	0.1	2.0	1	0	0	1	1	1	1	ACT	domain
ACT_6	PF13740.6	gi|55376917|ref|YP_134768.1|	-	0.017	15.1	0.0	0.037	14.0	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
DUF3335	PF11814.8	gi|55376917|ref|YP_134768.1|	-	0.12	11.8	0.1	0.27	10.7	0.1	1.5	1	0	0	1	1	1	0	Peptidase_C39	like	family
Usp	PF00582.26	gi|55376918|ref|YP_134769.1|	-	1.7e-29	103.2	0.1	2.1e-29	102.9	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|55376918|ref|YP_134769.1|	-	0.0041	16.6	0.3	0.0051	16.3	0.3	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
TMEM72	PF16054.5	gi|55376919|ref|YP_134770.1|	-	0.11	12.2	0.7	0.12	12.1	0.7	1.0	1	0	0	1	1	1	0	Transmembrane	protein	family	72
BCCT	PF02028.17	gi|55376920|ref|YP_134771.1|	-	1.3e-179	597.8	45.2	1.5e-179	597.5	45.2	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
Trp_oprn_chp	PF09534.10	gi|55376920|ref|YP_134771.1|	-	0.83	9.4	5.8	1	9.1	0.0	3.1	3	0	0	3	3	3	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF1600	PF07667.11	gi|55376920|ref|YP_134771.1|	-	2.1	8.6	8.5	1.2	9.4	3.8	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1600)
Lar_restr_allev	PF14354.6	gi|55376922|ref|YP_134773.1|	-	0.0013	19.1	1.2	0.0013	19.1	1.2	2.9	2	1	1	3	3	3	1	Restriction	alleviation	protein	Lar
zf-piccolo	PF05715.13	gi|55376922|ref|YP_134773.1|	-	0.0041	17.2	4.3	0.005	17.0	0.3	2.2	2	0	0	2	2	2	1	Piccolo	Zn-finger
OrfB_Zn_ribbon	PF07282.11	gi|55376922|ref|YP_134773.1|	-	0.0051	16.7	7.5	0.18	11.8	0.2	2.4	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.12	gi|55376922|ref|YP_134773.1|	-	0.013	15.5	7.0	0.66	10.0	7.0	2.2	1	1	0	1	1	1	0	zinc-ribbons
HypA	PF01155.19	gi|55376922|ref|YP_134773.1|	-	0.017	15.1	8.8	0.69	10.0	4.8	2.7	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
IBR	PF01485.21	gi|55376922|ref|YP_134773.1|	-	0.16	12.2	11.0	3.4	8.0	4.5	2.3	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
TRAF6_Z2	PF18048.1	gi|55376922|ref|YP_134773.1|	-	0.23	11.6	4.6	1.5	9.0	0.1	2.9	3	0	0	3	3	3	0	TNF	receptor-associated	factor	6	zinc	finger	2
zinc_ribbon_4	PF13717.6	gi|55376922|ref|YP_134773.1|	-	0.3	11.1	9.6	20	5.2	0.3	4.1	4	0	0	4	4	4	0	zinc-ribbon	domain
YacG	PF03884.14	gi|55376922|ref|YP_134773.1|	-	0.45	10.3	9.4	4.9	7.0	0.3	3.6	3	1	0	4	4	4	0	DNA	gyrase	inhibitor	YacG
zinc_ribbon_15	PF17032.5	gi|55376922|ref|YP_134773.1|	-	0.45	11.3	6.4	0.71	10.7	0.2	2.4	1	1	0	2	2	2	0	zinc-ribbon	family
zf_Rg	PF17915.1	gi|55376922|ref|YP_134773.1|	-	0.57	9.6	3.7	0.33	10.4	0.4	2.1	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|55376922|ref|YP_134773.1|	-	0.61	9.7	8.7	6.8	6.3	2.1	3.2	3	1	0	3	3	3	0	TFIIB	zinc-binding
Zn_Tnp_IS91	PF14319.6	gi|55376922|ref|YP_134773.1|	-	0.72	9.9	7.7	0.27	11.3	3.2	2.3	2	1	1	3	3	3	0	Transposase	zinc-binding	domain
zf-C4_Topoisom	PF01396.19	gi|55376922|ref|YP_134773.1|	-	0.94	9.3	7.8	4.9	7.0	0.0	3.4	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
Anti-TRAP	PF15777.5	gi|55376922|ref|YP_134773.1|	-	1.1	9.3	10.5	0.2	11.7	2.3	3.0	1	1	2	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
TerY_C	PF15616.6	gi|55376922|ref|YP_134773.1|	-	1.2	9.2	5.5	17	5.6	0.3	2.9	1	1	2	3	3	3	0	TerY-C	metal	binding	domain
zf-WRNIP1_ubi	PF18279.1	gi|55376922|ref|YP_134773.1|	-	1.5	9.6	3.4	21	6.1	0.1	3.1	3	0	0	3	3	3	0	Werner	helicase-interacting	protein	1	ubiquitin-binding	domain
MCM_OB	PF17207.3	gi|55376922|ref|YP_134773.1|	-	1.5	8.7	4.8	18	5.2	4.8	2.0	1	1	0	1	1	1	0	MCM	OB	domain
zf-LITAF-like	PF10601.9	gi|55376922|ref|YP_134773.1|	-	1.6	9.0	7.2	15	5.9	0.3	3.7	4	0	0	4	4	4	0	LITAF-like	zinc	ribbon	domain
zf-C3HC4_3	PF13920.6	gi|55376922|ref|YP_134773.1|	-	2.6	8.0	10.2	5.1	7.1	0.0	3.4	3	1	1	4	4	4	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-TFIIB	PF13453.6	gi|55376922|ref|YP_134773.1|	-	3	7.3	16.2	3.1	7.2	3.9	3.0	2	2	0	2	2	2	0	Transcription	factor	zinc-finger
DNA_ligase_ZBD	PF03119.16	gi|55376922|ref|YP_134773.1|	-	4.4	7.4	11.4	2.8	8.0	0.4	2.9	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Prok-RING_4	PF14447.6	gi|55376922|ref|YP_134773.1|	-	5.6	6.9	12.6	2.3	8.1	1.5	3.4	2	1	1	3	3	3	0	Prokaryotic	RING	finger	family	4
TFIIS_C	PF01096.18	gi|55376922|ref|YP_134773.1|	-	5.6	6.9	14.4	32	4.5	2.6	4.1	4	0	0	4	4	4	0	Transcription	factor	S-II	(TFIIS)
Zn-ribbon_8	PF09723.10	gi|55376922|ref|YP_134773.1|	-	5.8	7.1	17.6	3.5	7.8	1.0	3.7	2	2	1	4	4	4	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|55376922|ref|YP_134773.1|	-	6.1	6.7	8.9	3.7	7.4	0.8	3.3	3	1	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|55376922|ref|YP_134773.1|	-	7.8	6.6	19.9	22	5.1	5.3	3.4	1	1	2	3	3	3	0	Transposase	zinc-ribbon	domain
Ribosomal_L32p	PF01783.23	gi|55376922|ref|YP_134773.1|	-	7.9	6.8	7.3	0.85	9.9	0.4	2.6	2	2	1	3	3	3	0	Ribosomal	L32p	protein	family
YdjO	PF14169.6	gi|55376922|ref|YP_134773.1|	-	8.1	6.3	11.8	0.36	10.6	0.4	2.9	2	2	1	3	3	3	0	Cold-inducible	protein	YdjO
CpXC	PF14353.6	gi|55376922|ref|YP_134773.1|	-	9.4	6.3	8.0	5.7	7.0	4.2	2.4	2	1	0	2	2	2	0	CpXC	protein
FixQ	PF05545.11	gi|55376923|ref|YP_134774.1|	-	0.068	13.1	0.3	0.096	12.7	0.3	1.2	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Pterin_bind	PF00809.22	gi|55376924|ref|YP_134775.1|	-	1.4e-82	277.1	0.7	2.4e-82	276.3	0.7	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|55376924|ref|YP_134775.1|	-	1.2e-13	51.5	0.1	2.6e-13	50.4	0.1	1.6	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|55376924|ref|YP_134775.1|	-	2.5e-06	27.7	0.0	7.4e-06	26.1	0.0	1.9	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
TPP_enzyme_N	PF02776.18	gi|55376924|ref|YP_134775.1|	-	0.0089	15.7	0.3	0.032	13.9	0.3	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
FTHFS	PF01268.19	gi|55376925|ref|YP_134776.1|	-	2.1e-238	792.0	0.0	2.4e-238	791.8	0.0	1.0	1	0	0	1	1	1	1	Formate--tetrahydrofolate	ligase
FTCD_C	PF04961.12	gi|55376926|ref|YP_134777.1|	-	2e-38	132.0	7.0	2.5e-38	131.7	7.0	1.1	1	0	0	1	1	1	1	Formiminotransferase-cyclodeaminase
FBPase	PF00316.20	gi|55376926|ref|YP_134777.1|	-	0.047	13.2	0.6	0.068	12.6	0.6	1.3	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase,	N-terminal	domain
MccV	PF17508.2	gi|55376926|ref|YP_134777.1|	-	0.13	12.9	0.4	0.13	12.9	0.4	2.4	1	1	0	2	2	2	0	Microcin	V	bacteriocin
GTP_cyclohydroI	PF01227.22	gi|55376927|ref|YP_134778.1|	-	3e-51	173.4	0.0	3.9e-51	173.0	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
Sirohm_synth_M	PF14824.6	gi|55376928|ref|YP_134779.1|	-	0.065	12.7	0.3	0.23	10.9	0.3	2.0	1	0	0	1	1	1	0	Sirohaem	biosynthesis	protein	central
DUF530	PF04409.12	gi|55376930|ref|YP_134781.1|	-	0.011	14.1	0.1	0.014	13.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF530)
zf-C2H2_3	PF13878.6	gi|55376930|ref|YP_134781.1|	-	0.044	13.6	0.0	0.081	12.8	0.0	1.3	1	0	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
zinc_ribbon_4	PF13717.6	gi|55376930|ref|YP_134781.1|	-	0.11	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Seryl_tRNA_N	PF02403.22	gi|55376931|ref|YP_134782.1|	-	5.2e-07	29.9	43.4	0.00021	21.5	10.3	5.8	2	2	4	6	6	6	3	Seryl-tRNA	synthetase	N-terminal	domain
DUF812	PF05667.11	gi|55376931|ref|YP_134782.1|	-	3.9e-06	26.1	32.2	3e-05	23.1	5.7	2.7	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF812)
Spc7	PF08317.11	gi|55376931|ref|YP_134782.1|	-	5.5e-06	25.5	48.8	0.00017	20.6	11.2	4.3	2	2	1	4	4	4	2	Spc7	kinetochore	protein
FapA	PF03961.13	gi|55376931|ref|YP_134782.1|	-	2.7e-05	23.0	24.2	0.0011	17.7	3.0	3.7	1	1	2	4	4	4	2	Flagellar	Assembly	Protein	A
TPR_MLP1_2	PF07926.12	gi|55376931|ref|YP_134782.1|	-	8.8e-05	22.6	45.7	0.002	18.2	11.7	4.7	2	2	2	4	4	4	2	TPR/MLP1/MLP2-like	protein
GAS	PF13851.6	gi|55376931|ref|YP_134782.1|	-	0.00013	21.4	37.6	0.013	14.9	11.8	3.9	2	2	2	4	4	4	3	Growth-arrest	specific	micro-tubule	binding
HMMR_N	PF15905.5	gi|55376931|ref|YP_134782.1|	-	0.00015	21.4	35.5	0.0049	16.4	16.4	2.5	2	0	0	2	2	2	2	Hyaluronan	mediated	motility	receptor	N-terminal
EzrA	PF06160.12	gi|55376931|ref|YP_134782.1|	-	0.00026	19.3	34.8	0.0012	17.1	15.6	2.6	2	1	0	2	2	2	2	Septation	ring	formation	regulator,	EzrA
FlaC_arch	PF05377.11	gi|55376931|ref|YP_134782.1|	-	0.00042	20.6	36.5	0.19	12.2	1.3	7.2	4	2	1	6	6	6	2	Flagella	accessory	protein	C	(FlaC)
Fib_alpha	PF08702.10	gi|55376931|ref|YP_134782.1|	-	0.00087	19.5	28.9	0.82	9.8	5.1	4.3	4	0	0	4	4	4	2	Fibrinogen	alpha/beta	chain	family
AAA_13	PF13166.6	gi|55376931|ref|YP_134782.1|	-	0.0009	18.0	31.9	0.0085	14.8	14.3	2.3	1	1	1	2	2	2	2	AAA	domain
BLOC1_2	PF10046.9	gi|55376931|ref|YP_134782.1|	-	0.0012	19.1	31.7	3.7	7.9	0.9	6.7	3	2	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Atg14	PF10186.9	gi|55376931|ref|YP_134782.1|	-	0.0013	17.9	36.7	0.0086	15.2	3.3	3.8	2	2	2	4	4	4	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DHR10	PF18595.1	gi|55376931|ref|YP_134782.1|	-	0.0023	18.0	64.1	0.0076	16.3	11.4	5.7	3	2	2	5	5	5	2	Designed	helical	repeat	protein	10	domain
Golgin_A5	PF09787.9	gi|55376931|ref|YP_134782.1|	-	0.0024	17.4	50.8	0.019	14.5	5.3	4.0	1	1	3	4	4	4	1	Golgin	subfamily	A	member	5
Fez1	PF06818.15	gi|55376931|ref|YP_134782.1|	-	0.0047	17.4	43.7	0.54	10.7	15.3	3.3	1	1	0	2	2	2	2	Fez1
TMF_TATA_bd	PF12325.8	gi|55376931|ref|YP_134782.1|	-	0.0073	16.5	51.5	0.24	11.6	11.0	4.8	2	2	2	4	4	4	2	TATA	element	modulatory	factor	1	TATA	binding
ATG16	PF08614.11	gi|55376931|ref|YP_134782.1|	-	0.0079	16.4	61.8	0.011	15.9	17.7	4.2	1	1	2	4	4	4	2	Autophagy	protein	16	(ATG16)
APG6_N	PF17675.1	gi|55376931|ref|YP_134782.1|	-	0.0092	16.5	65.1	0.44	11.1	10.0	5.3	2	2	3	5	5	5	3	Apg6	coiled-coil	region
AAA_23	PF13476.6	gi|55376931|ref|YP_134782.1|	-	0.012	16.1	33.8	5.5e+03	-2.3	33.8	3.8	1	1	0	1	1	0	0	AAA	domain
NPV_P10	PF05531.12	gi|55376931|ref|YP_134782.1|	-	0.014	15.9	30.1	1.1	9.8	1.0	7.1	3	3	2	5	5	5	0	Nucleopolyhedrovirus	P10	protein
STAT_alpha	PF01017.20	gi|55376931|ref|YP_134782.1|	-	0.017	15.0	28.2	0.049	13.5	4.4	3.5	2	2	1	3	3	3	0	STAT	protein,	all-alpha	domain
Baculo_PEP_C	PF04513.12	gi|55376931|ref|YP_134782.1|	-	0.019	15.0	23.5	2.3	8.3	5.2	5.3	1	1	4	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FlxA	PF14282.6	gi|55376931|ref|YP_134782.1|	-	0.02	14.9	2.0	0.02	14.9	2.0	4.5	2	2	3	5	5	4	0	FlxA-like	protein
COG2	PF06148.11	gi|55376931|ref|YP_134782.1|	-	0.022	14.9	29.6	0.54	10.3	1.7	5.6	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4201	PF13870.6	gi|55376931|ref|YP_134782.1|	-	0.028	14.1	36.1	0.054	13.2	4.1	4.2	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF4201)
KASH_CCD	PF14662.6	gi|55376931|ref|YP_134782.1|	-	0.029	14.2	42.3	2.2	8.0	21.1	4.1	2	2	1	3	3	3	0	Coiled-coil	region	of	CCDC155	or	KASH
DUF1664	PF07889.12	gi|55376931|ref|YP_134782.1|	-	0.035	14.2	31.4	0.21	11.6	5.0	5.2	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Filament	PF00038.21	gi|55376931|ref|YP_134782.1|	-	0.04	13.5	51.4	0.13	11.8	14.4	3.7	2	2	1	3	3	3	0	Intermediate	filament	protein
HemX	PF04375.14	gi|55376931|ref|YP_134782.1|	-	0.044	13.1	28.8	0.023	14.0	2.4	4.1	2	2	3	5	5	5	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
TMF_DNA_bd	PF12329.8	gi|55376931|ref|YP_134782.1|	-	0.045	13.8	35.9	0.6	10.2	1.1	6.2	2	2	3	6	6	6	0	TATA	element	modulatory	factor	1	DNA	binding
Spectrin	PF00435.21	gi|55376931|ref|YP_134782.1|	-	0.058	13.9	38.3	0.22	12.1	3.6	5.7	2	2	3	5	5	5	0	Spectrin	repeat
kleA_kleC	PF17383.2	gi|55376931|ref|YP_134782.1|	-	0.062	13.6	0.5	0.062	13.6	0.5	6.0	2	2	2	5	5	5	0	Uncharacterized	KorC	regulated	protein	A
CENP-F_leu_zip	PF10473.9	gi|55376931|ref|YP_134782.1|	-	0.068	13.2	54.2	0.31	11.1	10.9	5.0	2	2	1	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF3584	PF12128.8	gi|55376931|ref|YP_134782.1|	-	0.1	10.1	45.1	0.048	11.2	11.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
IFT57	PF10498.9	gi|55376931|ref|YP_134782.1|	-	0.1	11.6	31.9	0.12	11.4	6.3	3.8	2	2	2	4	4	4	0	Intra-flagellar	transport	protein	57
DivIC	PF04977.15	gi|55376931|ref|YP_134782.1|	-	0.12	12.2	54.4	0.14	12.0	1.6	8.0	3	2	4	7	7	7	0	Septum	formation	initiator
FliD_N	PF02465.18	gi|55376931|ref|YP_134782.1|	-	0.19	12.5	11.2	26	5.6	0.7	5.3	2	2	4	6	6	5	0	Flagellar	hook-associated	protein	2	N-terminus
Zw10	PF06248.13	gi|55376931|ref|YP_134782.1|	-	0.2	10.2	19.4	0.015	13.9	5.4	3.1	2	1	1	3	3	3	0	Centromere/kinetochore	Zw10
OmpH	PF03938.14	gi|55376931|ref|YP_134782.1|	-	0.23	11.8	36.6	0.35	11.2	3.0	4.2	2	2	2	4	4	4	0	Outer	membrane	protein	(OmpH-like)
COMM_domain	PF07258.14	gi|55376931|ref|YP_134782.1|	-	0.25	11.5	3.5	11	6.3	0.0	3.1	3	0	0	3	3	2	0	COMM	domain
Occludin_ELL	PF07303.13	gi|55376931|ref|YP_134782.1|	-	0.26	12.0	19.6	1.5	9.5	0.3	5.2	2	2	3	6	6	6	0	Occludin	homology	domain
Prefoldin	PF02996.17	gi|55376931|ref|YP_134782.1|	-	0.31	11.0	35.9	1.3	9.0	0.4	7.5	3	2	4	7	7	6	0	Prefoldin	subunit
ERM	PF00769.19	gi|55376931|ref|YP_134782.1|	-	0.37	10.6	53.4	0.69	9.7	11.2	3.4	2	2	1	3	3	3	0	Ezrin/radixin/moesin	family
MAD	PF05557.13	gi|55376931|ref|YP_134782.1|	-	0.41	9.0	46.7	22	3.3	46.7	2.8	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
HOOK	PF05622.12	gi|55376931|ref|YP_134782.1|	-	0.43	8.7	50.4	0.028	12.6	27.2	2.7	1	1	1	2	2	2	0	HOOK	protein
Prefoldin_2	PF01920.20	gi|55376931|ref|YP_134782.1|	-	0.58	10.1	42.3	3.5	7.6	2.0	6.9	2	2	2	5	5	5	0	Prefoldin	subunit
Rab5-bind	PF09311.11	gi|55376931|ref|YP_134782.1|	-	0.59	9.5	48.6	1.3	8.4	13.1	3.6	1	1	0	3	3	3	0	Rabaptin-like	protein
Retrotrans_gag	PF03732.17	gi|55376931|ref|YP_134782.1|	-	0.6	10.4	0.1	0.6	10.4	0.1	4.4	4	2	1	5	5	2	0	Retrotransposon	gag	protein
Sec34	PF04136.15	gi|55376931|ref|YP_134782.1|	-	0.6	10.0	23.9	0.86	9.5	2.7	4.9	2	2	4	6	6	6	0	Sec34-like	family
FUSC	PF04632.12	gi|55376931|ref|YP_134782.1|	-	0.83	8.1	36.6	1.8	7.0	14.6	2.4	1	1	2	3	3	3	0	Fusaric	acid	resistance	protein	family
Mod_r	PF07200.13	gi|55376931|ref|YP_134782.1|	-	0.89	9.6	38.2	0.7	10.0	8.1	4.5	1	1	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF724	PF05266.14	gi|55376931|ref|YP_134782.1|	-	1.2	8.9	34.4	0.72	9.7	7.5	4.0	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF724)
DUF4763	PF15960.5	gi|55376931|ref|YP_134782.1|	-	1.3	8.2	30.3	1	8.6	1.5	4.6	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF4763)
DUF4407	PF14362.6	gi|55376931|ref|YP_134782.1|	-	1.4	8.2	42.7	2.7	7.3	14.6	3.0	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
MukB	PF04310.12	gi|55376931|ref|YP_134782.1|	-	1.5	8.6	6.4	14	5.4	0.1	3.2	2	1	1	3	3	2	0	MukB	N-terminal
Halo_GVPC	PF05465.13	gi|55376931|ref|YP_134782.1|	-	1.5	9.2	10.1	3.4	8.0	1.0	4.4	3	0	0	3	3	2	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
Laminin_II	PF06009.12	gi|55376931|ref|YP_134782.1|	-	1.6	8.7	30.6	0.37	10.8	4.6	4.1	2	2	1	3	3	3	0	Laminin	Domain	II
DUF2730	PF10805.8	gi|55376931|ref|YP_134782.1|	-	1.6	8.9	27.3	1.7	8.8	1.3	5.5	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF2730)
DUF1993	PF09351.10	gi|55376931|ref|YP_134782.1|	-	2.4	8.3	9.0	2.2	8.4	1.0	3.1	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF1993)
DUF4200	PF13863.6	gi|55376931|ref|YP_134782.1|	-	2.5	8.5	46.0	1.4	9.3	5.9	5.8	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF4200)
DUF745	PF05335.13	gi|55376931|ref|YP_134782.1|	-	2.8	7.6	13.7	0.19	11.4	1.4	3.1	2	2	2	4	4	3	0	Protein	of	unknown	function	(DUF745)
DUF5082	PF16888.5	gi|55376931|ref|YP_134782.1|	-	3.9	7.8	36.6	4.7	7.5	0.1	6.3	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF5082)
IKBKB_SDD	PF18397.1	gi|55376931|ref|YP_134782.1|	-	4.8	6.4	12.4	0.059	12.7	0.5	3.1	1	1	3	4	4	4	0	IQBAL	scaffold	dimerization	domain
COG5	PF10392.9	gi|55376931|ref|YP_134782.1|	-	5.5	7.2	26.5	0.074	13.2	6.3	4.4	2	2	3	5	5	5	0	Golgi	transport	complex	subunit	5
HIP1_clath_bdg	PF16515.5	gi|55376931|ref|YP_134782.1|	-	6.9	7.4	44.1	0.47	11.1	10.2	4.9	3	2	2	5	5	4	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
MCPsignal	PF00015.21	gi|55376931|ref|YP_134782.1|	-	7.7	6.3	18.8	9	6.1	1.0	4.1	2	2	3	5	5	5	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF4140	PF13600.6	gi|55376931|ref|YP_134782.1|	-	8.4	6.9	61.2	1.7	9.1	0.2	8.3	2	2	4	6	6	5	0	N-terminal	domain	of	unknown	function	(DUF4140)
FAM76	PF16046.5	gi|55376931|ref|YP_134782.1|	-	8.7	5.6	16.8	6.2	6.1	5.4	2.5	2	0	0	2	2	2	0	FAM76	protein
DUF948	PF06103.11	gi|55376931|ref|YP_134782.1|	-	8.7	6.7	21.3	7.9	6.8	1.5	5.3	3	2	3	6	6	5	0	Bacterial	protein	of	unknown	function	(DUF948)
Prominin	PF05478.11	gi|55376931|ref|YP_134782.1|	-	8.9	4.1	19.3	5.5	4.8	4.1	2.8	1	1	3	4	4	4	0	Prominin
GIT_CC	PF16559.5	gi|55376931|ref|YP_134782.1|	-	9.1	6.2	13.3	26	4.8	0.1	5.6	4	2	0	5	5	5	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
Imm7	PF15585.6	gi|55376931|ref|YP_134782.1|	-	9.1	6.6	7.9	2	8.7	0.5	3.5	2	2	2	4	4	2	0	Immunity	protein	7
Bacillus_HBL	PF05791.11	gi|55376931|ref|YP_134782.1|	-	9.9	5.9	19.3	4	7.2	4.4	4.3	3	1	2	5	5	5	0	Bacillus	haemolytic	enterotoxin	(HBL)
PTS_EIIC	PF02378.18	gi|55376932|ref|YP_134783.1|	-	1.4e-20	73.6	38.8	1.4e-20	73.6	38.8	1.9	2	0	0	2	2	2	2	Phosphotransferase	system,	EIIC
PTS_EIIA_2	PF00359.22	gi|55376933|ref|YP_134784.1|	-	1.4e-35	122.3	0.0	1.6e-35	122.1	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
Band_3_cyto	PF07565.13	gi|55376933|ref|YP_134784.1|	-	0.072	12.9	0.1	0.27	11.0	0.0	1.7	1	1	1	2	2	2	0	Band	3	cytoplasmic	domain
PTS-HPr	PF00381.19	gi|55376934|ref|YP_134785.1|	-	3.3e-23	81.7	0.2	3.7e-23	81.6	0.2	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
PEP-utilizers_C	PF02896.18	gi|55376935|ref|YP_134786.1|	-	2.4e-105	351.8	0.0	3.2e-105	351.5	0.0	1.1	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilisers_N	PF05524.13	gi|55376935|ref|YP_134786.1|	-	1e-24	86.9	0.3	1e-24	86.9	0.3	2.1	2	0	0	2	2	2	1	PEP-utilising	enzyme,	N-terminal
PEP-utilizers	PF00391.23	gi|55376935|ref|YP_134786.1|	-	7.6e-22	76.8	0.3	1.5e-21	75.8	0.3	1.5	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
PTS_IIB	PF02302.17	gi|55376936|ref|YP_134787.1|	-	6.1e-17	62.1	1.4	8.3e-17	61.7	1.4	1.2	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Hepar_II_III	PF07940.13	gi|55376938|ref|YP_134789.1|	-	4.4e-48	164.0	1.5	6.7e-48	163.4	1.5	1.3	1	0	0	1	1	1	1	Heparinase	II/III-like	protein
Hepar_II_III_N	PF16889.5	gi|55376938|ref|YP_134789.1|	-	3.9e-20	72.4	0.0	6.3e-20	71.7	0.0	1.2	1	0	0	1	1	1	1	Heparinase	II/III	N-terminus
Glycos_transf_1	PF00534.20	gi|55376939|ref|YP_134790.1|	-	1.3e-21	76.9	0.0	1.8e-21	76.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|55376939|ref|YP_134790.1|	-	6.7e-21	75.1	0.0	1.3e-20	74.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|55376939|ref|YP_134790.1|	-	6e-18	65.8	2.0	8.4e-18	65.3	1.4	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|55376939|ref|YP_134790.1|	-	2.1e-13	50.6	0.3	3.1e-13	50.1	0.3	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|55376939|ref|YP_134790.1|	-	1.6e-08	34.8	0.0	3.3e-08	33.8	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF3515	PF12028.8	gi|55376940|ref|YP_134791.1|	-	0.0032	17.2	0.5	0.0032	17.2	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3515)
Copine	PF07002.16	gi|55376940|ref|YP_134791.1|	-	0.072	12.5	0.0	0.072	12.5	0.0	1.0	1	0	0	1	1	1	0	Copine
DDE_Tnp_1	PF01609.21	gi|55376941|ref|YP_134792.1|	-	2.6e-21	76.2	2.7	6.6e-21	74.9	2.7	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|55376941|ref|YP_134792.1|	-	0.0016	18.5	0.0	0.0026	17.8	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|55376941|ref|YP_134792.1|	-	0.0024	17.9	0.0	0.0062	16.5	0.0	1.7	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DUF1989	PF09347.10	gi|55376941|ref|YP_134792.1|	-	0.015	14.9	0.3	0.025	14.2	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1989)
DDE_Tnp_1_6	PF13751.6	gi|55376941|ref|YP_134792.1|	-	0.054	13.7	0.8	0.12	12.6	0.0	1.9	2	1	0	2	2	2	0	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|55376941|ref|YP_134792.1|	-	0.075	13.4	0.1	0.16	12.3	0.1	1.6	1	0	0	1	1	1	0	Transposase	DDE	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006395.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006395.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006395.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006395.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:19:14 2019
# [ok]