#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
PIN	PF01850.16	gi|55376417|ref|YP_134269.1|	-	6.6e-05	23.2	0.1	0.00042	20.6	0.0	2.1	2	0	0	2	2	2	1	PIN	domain
TRAM	PF01938.15	gi|55376419|ref|YP_134271.1|	-	5.5e-15	54.9	1.7	1e-14	54.0	1.2	1.5	1	0	0	1	1	1	1	TRAM	domain
MSP1_C	PF07462.6	gi|55376419|ref|YP_134271.1|	-	0.48	8.7	1.6	0.58	8.4	1.1	1.0	1	0	0	1	1	1	0	Merozoite	surface	protein	1	(MSP1)	C-terminus
Rsa3	PF14615.1	gi|55376420|ref|YP_134272.1|	-	0.11	11.8	0.1	0.21	10.8	0.1	1.5	1	0	0	1	1	1	0	Ribosome-assembly	protein	3
NTP_transf_5	PF14907.1	gi|55376421|ref|YP_134273.1|	-	4.1e-08	32.8	0.0	5.6e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
DUF1814	PF08843.6	gi|55376421|ref|YP_134273.1|	-	9.3e-07	28.8	1.0	4.9e-06	26.4	0.6	1.9	1	1	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF1814)
Propep_M14	PF02244.11	gi|55376421|ref|YP_134273.1|	-	0.0019	17.7	0.0	0.0057	16.2	0.0	1.8	1	0	0	1	1	1	1	Carboxypeptidase	activation	peptide
NTP_transf_2	PF01909.18	gi|55376421|ref|YP_134273.1|	-	0.087	13.1	0.3	0.23	11.8	0.0	1.7	2	0	0	2	2	2	0	Nucleotidyltransferase	domain
HTH_23	PF13384.1	gi|55376422|ref|YP_134274.1|	-	7.8e-06	25.3	0.1	3.4e-05	23.3	0.0	2.1	3	1	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|55376422|ref|YP_134274.1|	-	8.9e-05	22.4	0.0	0.0005	20.0	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376422|ref|YP_134274.1|	-	0.00025	20.6	0.1	0.00067	19.2	0.0	1.6	1	1	1	2	2	2	1	MarR	family
Fe_dep_repress	PF01325.14	gi|55376422|ref|YP_134274.1|	-	0.0006	19.6	0.0	0.0045	16.9	0.0	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_1	PF00126.22	gi|55376422|ref|YP_134274.1|	-	0.00095	18.8	0.2	0.0042	16.7	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TrmB	PF01978.14	gi|55376422|ref|YP_134274.1|	-	0.0017	18.0	0.0	0.0031	17.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|55376422|ref|YP_134274.1|	-	0.0022	17.3	0.0	0.0033	16.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|55376422|ref|YP_134274.1|	-	0.0023	17.3	0.0	0.01	15.2	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.15	gi|55376422|ref|YP_134274.1|	-	0.0024	17.9	0.0	0.036	14.1	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_29	PF13551.1	gi|55376422|ref|YP_134274.1|	-	0.0081	16.3	0.0	0.017	15.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
RPA_C	PF08784.6	gi|55376422|ref|YP_134274.1|	-	0.013	15.8	0.0	0.024	15.0	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF2250	PF10007.4	gi|55376422|ref|YP_134274.1|	-	0.022	14.6	0.0	0.035	13.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_30	PF13556.1	gi|55376422|ref|YP_134274.1|	-	0.028	14.0	0.0	0.06	12.9	0.0	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|55376422|ref|YP_134274.1|	-	0.13	11.9	0.1	0.28	10.7	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF883	PF05957.8	gi|55376422|ref|YP_134274.1|	-	0.13	12.6	0.9	0.22	11.9	0.6	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF883)
CbiA	PF01656.18	gi|55376423|ref|YP_134275.1|	-	2.4e-29	102.1	0.1	3.2e-29	101.7	0.1	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55376423|ref|YP_134275.1|	-	8e-12	45.3	0.2	2.7e-11	43.6	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|55376423|ref|YP_134275.1|	-	3e-11	42.8	3.8	4.9e-06	25.8	0.4	2.2	1	1	0	2	2	2	2	ATPase	MipZ
VirC1	PF07015.6	gi|55376423|ref|YP_134275.1|	-	1.9e-05	23.8	0.8	0.00086	18.4	0.1	2.3	2	0	0	2	2	2	1	VirC1	protein
ArsA_ATPase	PF02374.10	gi|55376423|ref|YP_134275.1|	-	0.00016	20.8	3.3	0.011	14.8	2.3	2.5	1	1	0	1	1	1	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|55376423|ref|YP_134275.1|	-	0.0016	17.8	0.1	0.0035	16.7	0.0	1.5	1	1	0	1	1	1	1	YhjQ	protein
Fer4_NifH	PF00142.13	gi|55376423|ref|YP_134275.1|	-	0.023	13.8	0.1	3.9	6.5	0.0	2.3	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MBT	PF02820.13	gi|55376423|ref|YP_134275.1|	-	0.047	13.6	0.1	0.97	9.4	0.0	2.4	1	1	1	2	2	2	0	mbt	repeat
Mucin	PF01456.12	gi|55376424|ref|YP_134276.1|	-	0.013	15.2	5.5	0.016	14.9	3.8	1.1	1	0	0	1	1	1	0	Mucin-like	glycoprotein
RR_TM4-6	PF06459.7	gi|55376424|ref|YP_134276.1|	-	0.062	13.1	2.0	0.075	12.9	1.4	1.1	1	0	0	1	1	1	0	Ryanodine	Receptor	TM	4-6
Neugrin	PF06413.6	gi|55376424|ref|YP_134276.1|	-	0.15	11.8	2.5	0.21	11.3	1.7	1.2	1	0	0	1	1	1	0	Neugrin
DUF4628	PF15429.1	gi|55376424|ref|YP_134276.1|	-	0.18	11.1	3.2	0.2	11.0	2.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4628)
SSP160	PF06933.6	gi|55376424|ref|YP_134276.1|	-	0.4	8.5	6.7	0.5	8.2	4.6	1.0	1	0	0	1	1	1	0	Special	lobe-specific	silk	protein	SSP160
Pox_RNA_Pol_19	PF05320.7	gi|55376424|ref|YP_134276.1|	-	0.47	10.2	5.0	0.8	9.4	3.5	1.4	1	0	0	1	1	1	0	Poxvirus	DNA-directed	RNA	polymerase	19	kDa	subunit
Phage_int_SAM_1	PF02899.12	gi|55376425|ref|YP_134277.1|	-	5.9e-06	26.3	0.2	0.0011	19.0	0.0	3.6	4	0	0	4	4	4	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_integrase	PF00589.17	gi|55376425|ref|YP_134277.1|	-	0.0039	16.8	0.0	0.024	14.3	0.0	2.2	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|55376425|ref|YP_134277.1|	-	0.014	15.7	0.0	0.033	14.5	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
FmdE	PF02663.9	gi|55376426|ref|YP_134278.1|	-	0.063	13.1	0.0	0.13	12.1	0.0	1.6	1	1	0	1	1	1	0	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
E1-E2_ATPase	PF00122.15	gi|55376427|ref|YP_134279.1|	-	3.9e-47	160.2	0.2	3.9e-47	160.2	0.1	2.4	2	1	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55376427|ref|YP_134279.1|	-	7.6e-44	150.6	14.8	9.6e-44	150.3	8.2	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|55376427|ref|YP_134279.1|	-	1.8e-15	57.5	0.8	4.3e-15	56.3	0.5	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|55376427|ref|YP_134279.1|	-	0.0012	18.4	2.3	0.039	13.5	1.0	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|55376427|ref|YP_134279.1|	-	0.054	13.3	0.3	0.69	9.8	0.0	2.9	4	0	0	4	4	4	0	Haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55376428|ref|YP_134280.1|	-	3.3e-14	52.7	0.0	3.7e-14	52.6	0.0	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF276	PF03434.8	gi|55376428|ref|YP_134280.1|	-	0.022	13.7	0.0	0.022	13.7	0.0	1.1	1	0	0	1	1	1	0	DUF276
PMSR	PF01625.16	gi|55376428|ref|YP_134280.1|	-	0.028	14.2	0.1	0.033	14.0	0.1	1.1	1	0	0	1	1	1	0	Peptide	methionine	sulfoxide	reductase
HTH_20	PF12840.2	gi|55376429|ref|YP_134281.1|	-	1.8e-16	59.6	0.4	4e-16	58.5	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|55376429|ref|YP_134281.1|	-	0.00019	20.9	0.0	0.00029	20.2	0.0	1.4	1	0	0	1	1	1	1	TFIIE	alpha	subunit
TrmB	PF01978.14	gi|55376429|ref|YP_134281.1|	-	0.0006	19.4	0.1	0.0029	17.2	0.0	2.1	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|55376429|ref|YP_134281.1|	-	0.00067	19.2	0.2	0.0065	16.1	0.2	2.3	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Cdc6_C	PF09079.6	gi|55376429|ref|YP_134281.1|	-	0.002	17.8	0.1	0.0065	16.1	0.1	1.8	1	1	0	1	1	1	1	CDC6,	C	terminal
HTH_12	PF08461.5	gi|55376429|ref|YP_134281.1|	-	0.0025	17.5	0.1	0.0044	16.7	0.1	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
FUR	PF01475.14	gi|55376429|ref|YP_134281.1|	-	0.038	13.9	0.0	0.074	12.9	0.0	1.4	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
PadR	PF03551.9	gi|55376429|ref|YP_134281.1|	-	0.042	13.6	0.0	0.077	12.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.1	gi|55376429|ref|YP_134281.1|	-	0.14	11.5	0.0	0.34	10.3	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RHH_1	PF01402.16	gi|55376429|ref|YP_134281.1|	-	0.52	10.2	2.1	15	5.7	0.0	3.4	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
Amidohydro_1	PF01979.15	gi|55376430|ref|YP_134282.1|	-	6.4e-33	114.8	0.0	9.9e-33	114.1	0.0	1.3	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|55376430|ref|YP_134282.1|	-	5e-19	69.3	5.2	4.3e-18	66.3	3.6	2.2	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_5	PF13594.1	gi|55376430|ref|YP_134282.1|	-	2.6e-13	49.5	0.1	1.1e-12	47.6	0.0	2.2	2	0	0	2	2	2	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|55376430|ref|YP_134282.1|	-	6.1e-12	45.4	3.0	9.2e-10	38.2	0.6	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
DUF318	PF03773.8	gi|55376431|ref|YP_134283.1|	-	1.4e-44	152.3	11.8	2.5e-44	151.5	8.2	1.3	1	0	0	1	1	1	1	Predicted	permease
YHS	PF04945.8	gi|55376431|ref|YP_134283.1|	-	3.1e-17	62.1	7.2	1.2e-11	44.2	1.6	2.3	2	0	0	2	2	2	2	YHS	domain
zf-FCS	PF06467.9	gi|55376431|ref|YP_134283.1|	-	0.0004	19.9	5.6	0.1	12.2	0.5	2.4	2	0	0	2	2	2	2	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ribosomal_L24e	PF01246.15	gi|55376431|ref|YP_134283.1|	-	0.005	16.6	0.2	0.14	12.0	0.1	2.3	2	0	0	2	2	2	1	Ribosomal	protein	L24e
zf-HIT	PF04438.11	gi|55376431|ref|YP_134283.1|	-	0.035	13.7	1.9	0.054	13.1	0.2	2.0	2	0	0	2	2	2	0	HIT	zinc	finger
Arc_trans_TRASH	PF08394.5	gi|55376431|ref|YP_134283.1|	-	0.044	13.9	0.2	0.1	12.7	0.1	1.6	1	0	0	1	1	1	0	Archaeal	TRASH	domain
RPAP2_Rtr1	PF04181.8	gi|55376431|ref|YP_134283.1|	-	0.082	13.0	0.5	14	5.8	0.0	2.2	2	0	0	2	2	2	0	Rtr1/RPAP2	family
SKG6	PF08693.5	gi|55376431|ref|YP_134283.1|	-	6.3	6.1	6.1	6.4	6.1	0.3	3.1	2	0	0	2	2	2	0	Transmembrane	alpha-helix	domain
MarR_2	PF12802.2	gi|55376432|ref|YP_134284.1|	-	2.6e-07	30.2	0.1	4.4e-07	29.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|55376432|ref|YP_134284.1|	-	2.4e-06	27.1	0.0	5.1e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|55376432|ref|YP_134284.1|	-	1.4e-05	24.6	0.1	2.4e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|55376432|ref|YP_134284.1|	-	0.0018	17.6	0.0	0.0029	16.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DGF-1_5	PF11038.3	gi|55376432|ref|YP_134284.1|	-	0.0028	16.9	0.1	0.0035	16.6	0.1	1.2	1	0	0	1	1	1	1	Dispersed	gene	family	protein	1	of	Trypanosoma	cruzi	region	5
Penicillinase_R	PF03965.11	gi|55376432|ref|YP_134284.1|	-	0.0093	16.0	0.0	0.017	15.2	0.0	1.4	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_27	PF13463.1	gi|55376432|ref|YP_134284.1|	-	0.024	14.9	0.0	0.042	14.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|55376432|ref|YP_134284.1|	-	0.04	13.5	0.0	0.069	12.7	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
RPA_C	PF08784.6	gi|55376432|ref|YP_134284.1|	-	0.11	12.8	0.0	0.28	11.6	0.0	1.6	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
DUF4307	PF14155.1	gi|55376432|ref|YP_134284.1|	-	0.13	12.0	0.1	7.4	6.3	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4307)
SHOCT	PF09851.4	gi|55376434|ref|YP_134286.1|	-	4.5e-09	35.4	3.2	4.5e-09	35.4	2.2	1.5	2	0	0	2	2	2	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|55376434|ref|YP_134286.1|	-	0.0011	18.6	1.2	0.0021	17.7	0.9	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DUF1517	PF07466.6	gi|55376434|ref|YP_134286.1|	-	0.062	12.2	0.7	0.076	11.9	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1517)
GvpG	PF05120.7	gi|55376434|ref|YP_134286.1|	-	0.085	12.6	0.7	0.13	12.0	0.5	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
MotA_ExbB	PF01618.11	gi|55376434|ref|YP_134286.1|	-	0.48	10.0	0.1	0.48	10.0	0.1	1.9	1	1	1	2	2	2	0	MotA/TolQ/ExbB	proton	channel	family
DUF302	PF03625.9	gi|55376435|ref|YP_134287.1|	-	1.2e-24	85.5	0.0	1.7e-24	85.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
SHOCT	PF09851.4	gi|55376436|ref|YP_134288.1|	-	2.2e-08	33.2	0.7	2.9e-08	32.8	0.5	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|55376436|ref|YP_134288.1|	-	9.1e-06	25.3	0.5	1.3e-05	24.8	0.3	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DUF4381	PF14316.1	gi|55376436|ref|YP_134288.1|	-	0.033	14.2	0.0	0.033	14.2	0.0	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
NfeD	PF01957.13	gi|55376436|ref|YP_134288.1|	-	0.058	13.5	2.5	0.08	13.0	1.8	1.2	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
GvpG	PF05120.7	gi|55376436|ref|YP_134288.1|	-	0.078	12.7	0.1	0.11	12.2	0.1	1.2	1	0	0	1	1	1	0	Gas	vesicle	protein	G
DUF3007	PF11460.3	gi|55376436|ref|YP_134288.1|	-	0.13	12.3	0.8	0.3	11.1	0.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
DUF805	PF05656.9	gi|55376436|ref|YP_134288.1|	-	0.15	11.9	3.5	1.4	8.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF805)
Apq12	PF12716.2	gi|55376436|ref|YP_134288.1|	-	0.21	11.2	8.2	0.23	11.1	1.5	2.1	2	0	0	2	2	2	0	Nuclear	pore	assembly	and	biogenesis
Thioredoxin	PF00085.15	gi|55376437|ref|YP_134289.1|	-	3.1e-11	42.8	0.0	3.8e-11	42.5	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|55376437|ref|YP_134289.1|	-	2.5e-08	34.1	0.2	2.2e-07	31.0	0.1	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|55376437|ref|YP_134289.1|	-	9.4e-05	22.1	0.1	0.00012	21.8	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_4	PF13462.1	gi|55376437|ref|YP_134289.1|	-	0.00066	19.7	0.3	0.056	13.4	0.0	2.0	1	1	1	2	2	2	2	Thioredoxin
DUF836	PF05768.9	gi|55376437|ref|YP_134289.1|	-	0.0023	18.1	0.0	0.0033	17.6	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.1	gi|55376437|ref|YP_134289.1|	-	0.009	15.5	0.0	0.0092	15.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
HyaE	PF07449.6	gi|55376437|ref|YP_134289.1|	-	0.023	14.6	0.0	0.043	13.7	0.0	1.5	1	1	1	2	2	2	0	Hydrogenase-1	expression	protein	HyaE
Glutaredoxin	PF00462.19	gi|55376437|ref|YP_134289.1|	-	0.068	13.1	1.2	0.24	11.3	0.4	2.2	2	1	0	2	2	2	0	Glutaredoxin
SHOCT	PF09851.4	gi|55376438|ref|YP_134290.1|	-	1.2e-09	37.2	4.7	3.1e-09	35.9	2.5	1.9	2	0	0	2	2	2	1	Short	C-terminal	domain
Copper-bind	PF00127.15	gi|55376438|ref|YP_134290.1|	-	2.4e-09	37.2	0.0	4.8e-09	36.3	0.0	1.5	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
GvpG	PF05120.7	gi|55376438|ref|YP_134290.1|	-	0.0011	18.7	1.0	0.0057	16.4	0.3	2.0	2	0	0	2	2	2	1	Gas	vesicle	protein	G
Cupredoxin_1	PF13473.1	gi|55376438|ref|YP_134290.1|	-	0.0013	18.5	0.0	0.0023	17.8	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.4	gi|55376438|ref|YP_134290.1|	-	0.0033	17.2	0.3	0.0033	17.2	0.2	3.0	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF1707	PF08044.6	gi|55376438|ref|YP_134290.1|	-	0.01	15.5	0.8	0.024	14.3	0.6	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1707)
CytB6-F_Fe-S	PF08802.5	gi|55376438|ref|YP_134290.1|	-	0.23	11.4	1.3	0.68	9.9	0.0	2.6	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
ABC2_membrane_3	PF12698.2	gi|55376439|ref|YP_134291.1|	-	3.4e-09	36.2	8.3	3.4e-09	36.2	5.8	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|55376439|ref|YP_134291.1|	-	2.4e-06	26.8	7.4	3.5e-06	26.3	5.1	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Zip	PF02535.17	gi|55376439|ref|YP_134291.1|	-	0.41	9.5	3.5	0.83	8.6	2.4	1.5	1	0	0	1	1	1	0	ZIP	Zinc	transporter
DUF2798	PF11391.3	gi|55376439|ref|YP_134291.1|	-	0.49	10.1	0.1	0.49	10.1	0.1	3.4	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2798)
FUSC-like	PF12805.2	gi|55376439|ref|YP_134291.1|	-	0.73	8.7	3.7	1.4	7.7	2.5	1.5	1	0	0	1	1	1	0	FUSC-like	inner	membrane	protein	yccS
ABC2_membrane	PF01061.19	gi|55376439|ref|YP_134291.1|	-	0.8	8.8	20.4	0.031	13.4	9.7	1.9	2	1	0	2	2	2	0	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|55376440|ref|YP_134292.1|	-	9.2e-11	41.3	10.1	9.2e-11	41.3	7.0	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|55376440|ref|YP_134292.1|	-	0.00047	19.3	13.9	0.00047	19.3	9.6	1.9	1	1	1	2	2	2	1	ABC-2	type	transporter
ABC_tran	PF00005.22	gi|55376441|ref|YP_134293.1|	-	3.3e-26	92.2	0.0	5.8e-26	91.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376441|ref|YP_134293.1|	-	1.2e-09	38.6	0.6	0.00024	21.1	0.1	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|55376441|ref|YP_134293.1|	-	0.00022	21.5	0.0	0.00026	21.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|55376441|ref|YP_134293.1|	-	0.00024	20.5	0.2	0.00047	19.6	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|55376441|ref|YP_134293.1|	-	0.00086	18.5	0.1	0.0014	17.8	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|55376441|ref|YP_134293.1|	-	0.0014	17.9	0.1	0.011	14.9	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
MobB	PF03205.9	gi|55376441|ref|YP_134293.1|	-	0.0014	18.2	0.4	0.006	16.3	0.1	2.0	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|55376441|ref|YP_134293.1|	-	0.0016	19.2	0.9	0.0041	17.9	0.6	1.8	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|55376441|ref|YP_134293.1|	-	0.0051	16.7	0.0	0.0092	15.9	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_10	PF12846.2	gi|55376441|ref|YP_134293.1|	-	0.0069	15.8	1.2	0.044	13.2	0.1	2.4	2	1	0	3	3	3	1	AAA-like	domain
ArgK	PF03308.11	gi|55376441|ref|YP_134293.1|	-	0.033	12.9	0.2	0.051	12.3	0.1	1.2	1	0	0	1	1	1	0	ArgK	protein
Dynamin_N	PF00350.18	gi|55376441|ref|YP_134293.1|	-	0.033	13.9	0.8	0.1	12.3	0.6	2.0	1	1	0	1	1	1	0	Dynamin	family
AAA_25	PF13481.1	gi|55376441|ref|YP_134293.1|	-	0.034	13.5	0.0	0.074	12.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|55376441|ref|YP_134293.1|	-	0.038	13.5	0.0	0.09	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|55376441|ref|YP_134293.1|	-	0.04	12.8	0.7	0.26	10.1	0.2	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|55376441|ref|YP_134293.1|	-	0.05	13.5	0.0	0.084	12.8	0.0	1.5	2	0	0	2	2	1	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|55376441|ref|YP_134293.1|	-	0.079	12.8	0.4	0.5	10.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
GBP	PF02263.14	gi|55376441|ref|YP_134293.1|	-	0.089	11.8	0.0	0.14	11.1	0.0	1.3	1	0	0	1	1	1	0	Guanylate-binding	protein,	N-terminal	domain
AAA_15	PF13175.1	gi|55376441|ref|YP_134293.1|	-	0.095	11.7	0.0	0.12	11.4	0.0	1.3	1	1	0	1	1	1	0	AAA	ATPase	domain
NTPase_1	PF03266.10	gi|55376441|ref|YP_134293.1|	-	0.096	12.3	0.6	2.6	7.7	0.2	2.4	2	1	0	2	2	2	0	NTPase
RNA_helicase	PF00910.17	gi|55376441|ref|YP_134293.1|	-	0.11	12.6	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Miro	PF08477.8	gi|55376441|ref|YP_134293.1|	-	0.12	12.9	0.3	0.41	11.1	0.1	2.1	1	1	1	2	2	2	0	Miro-like	protein
FtsK_SpoIIIE	PF01580.13	gi|55376441|ref|YP_134293.1|	-	0.14	11.6	0.0	0.27	10.6	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
NACHT	PF05729.7	gi|55376441|ref|YP_134293.1|	-	0.14	11.8	0.1	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.17	gi|55376441|ref|YP_134293.1|	-	0.17	10.7	0.2	0.27	10.0	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
HTH_AsnC-type	PF13404.1	gi|55376442|ref|YP_134294.1|	-	2.2e-17	62.2	0.4	4.8e-17	61.2	0.3	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376442|ref|YP_134294.1|	-	2e-15	55.8	0.0	3.4e-15	55.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|55376442|ref|YP_134294.1|	-	4.3e-06	26.3	0.0	7.2e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|55376442|ref|YP_134294.1|	-	1.1e-05	25.1	0.1	2.2e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376442|ref|YP_134294.1|	-	2.3e-05	23.9	0.2	4.2e-05	23.1	0.2	1.4	1	0	0	1	1	1	1	MarR	family
zf-FCS	PF06467.9	gi|55376442|ref|YP_134294.1|	-	3.2e-05	23.4	0.5	5.6e-05	22.6	0.3	1.4	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
HTH_23	PF13384.1	gi|55376442|ref|YP_134294.1|	-	0.00043	19.8	0.1	0.019	14.6	0.0	2.6	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_5	PF01022.15	gi|55376442|ref|YP_134294.1|	-	0.00048	19.7	0.0	0.00076	19.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_1	PF00126.22	gi|55376442|ref|YP_134294.1|	-	0.0019	17.9	0.0	0.0046	16.6	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_IclR	PF09339.5	gi|55376442|ref|YP_134294.1|	-	0.0021	17.6	0.1	0.0042	16.6	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_28	PF13518.1	gi|55376442|ref|YP_134294.1|	-	0.0043	17.0	0.1	0.15	12.0	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|55376442|ref|YP_134294.1|	-	0.014	15.2	0.0	0.026	14.4	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|55376442|ref|YP_134294.1|	-	0.019	14.6	0.0	0.056	13.1	0.0	1.7	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|55376442|ref|YP_134294.1|	-	0.062	13.1	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|55376442|ref|YP_134294.1|	-	0.085	13.1	0.1	0.19	12.0	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|55376442|ref|YP_134294.1|	-	0.091	11.9	0.0	0.22	10.7	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF2116	PF09889.4	gi|55376442|ref|YP_134294.1|	-	0.17	11.6	4.2	1.2	9.0	2.9	2.0	1	1	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-ribbon_3	PF13248.1	gi|55376442|ref|YP_134294.1|	-	0.23	10.7	1.2	0.58	9.4	0.2	1.5	1	1	1	2	2	2	0	zinc-ribbon	domain
YHS	PF04945.8	gi|55376443|ref|YP_134295.1|	-	9.3e-15	54.2	1.3	1.1e-14	54.0	0.9	1.1	1	0	0	1	1	1	1	YHS	domain
ATPase-cat_bd	PF12156.3	gi|55376443|ref|YP_134295.1|	-	0.0044	17.5	0.1	0.0049	17.3	0.1	1.1	1	0	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
Arc_trans_TRASH	PF08394.5	gi|55376443|ref|YP_134295.1|	-	0.0083	16.2	0.1	0.01	15.9	0.0	1.2	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.9	gi|55376443|ref|YP_134295.1|	-	0.011	15.3	0.8	0.024	14.2	0.4	1.6	1	1	1	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ribosomal_L24e	PF01246.15	gi|55376443|ref|YP_134295.1|	-	0.069	13.0	0.0	0.069	13.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L24e
Methyltransf_11	PF08241.7	gi|55376444|ref|YP_134296.1|	-	6.8e-18	64.9	0.0	1.1e-17	64.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|55376444|ref|YP_134296.1|	-	8.2e-16	57.9	0.0	1.2e-15	57.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|55376444|ref|YP_134296.1|	-	2.4e-11	43.6	0.0	3.6e-11	43.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|55376444|ref|YP_134296.1|	-	4.7e-11	43.2	0.0	3.1e-10	40.6	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|55376444|ref|YP_134296.1|	-	6.4e-10	39.3	0.0	1.2e-09	38.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|55376444|ref|YP_134296.1|	-	7.6e-09	35.0	0.0	1e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_26	PF13659.1	gi|55376444|ref|YP_134296.1|	-	2e-08	34.2	0.1	6.4e-08	32.6	0.1	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|55376444|ref|YP_134296.1|	-	1.8e-06	27.2	0.0	2.4e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|55376444|ref|YP_134296.1|	-	4.7e-06	26.9	0.0	9.7e-06	25.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.9	gi|55376444|ref|YP_134296.1|	-	7.6e-05	21.9	0.0	0.00011	21.3	0.0	1.3	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
MTS	PF05175.9	gi|55376444|ref|YP_134296.1|	-	8.9e-05	21.9	0.0	0.00027	20.3	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|55376444|ref|YP_134296.1|	-	0.0018	17.8	0.0	0.0025	17.3	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_9	PF08003.6	gi|55376444|ref|YP_134296.1|	-	0.0063	15.2	0.0	0.0095	14.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
PrmA	PF06325.8	gi|55376444|ref|YP_134296.1|	-	0.0098	15.0	0.0	0.017	14.2	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.1	gi|55376444|ref|YP_134296.1|	-	0.015	14.9	0.0	0.025	14.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
DUF411	PF04214.8	gi|55376446|ref|YP_134298.1|	-	5.9e-30	102.5	0.2	8.4e-30	102.0	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF
Usp	PF00582.21	gi|55376447|ref|YP_134299.1|	-	4.6e-44	150.0	0.1	8.1e-27	94.1	0.0	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
GTP-bdg_N	PF13167.1	gi|55376447|ref|YP_134299.1|	-	0.062	13.4	0.1	9.8	6.3	0.0	2.5	2	0	0	2	2	2	0	GTP-binding	GTPase	N-terminal
DUF2910	PF11139.3	gi|55376448|ref|YP_134300.1|	-	0.032	13.3	2.8	0.037	13.1	2.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2910)
Adeno_E3	PF06040.6	gi|55376448|ref|YP_134300.1|	-	3.8	7.4	5.7	15	5.5	0.2	2.1	2	0	0	2	2	2	0	Adenovirus	E3	protein
DoxX	PF07681.7	gi|55376449|ref|YP_134301.1|	-	1.2e-08	35.2	11.5	1.2e-08	35.2	7.9	1.8	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.8	gi|55376449|ref|YP_134301.1|	-	0.031	13.9	5.9	0.046	13.4	4.1	1.3	1	0	0	1	1	1	0	TQO	small	subunit	DoxD
Trp_halogenase	PF04820.9	gi|55376451|ref|YP_134303.1|	-	7.9e-07	28.0	0.1	0.00058	18.6	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
NAD_binding_8	PF13450.1	gi|55376451|ref|YP_134303.1|	-	5.1e-05	23.2	0.7	0.00014	21.7	0.2	2.0	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|55376451|ref|YP_134303.1|	-	5.2e-05	23.2	0.1	0.00013	21.9	0.1	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|55376451|ref|YP_134303.1|	-	0.00013	20.9	0.0	0.00017	20.5	0.0	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.22	gi|55376451|ref|YP_134303.1|	-	0.00049	20.4	0.8	0.23	11.8	0.2	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|55376451|ref|YP_134303.1|	-	0.0011	17.9	0.2	0.049	12.5	0.0	2.3	2	1	0	2	2	2	1	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|55376451|ref|YP_134303.1|	-	0.003	16.0	0.5	0.0095	14.4	0.1	1.8	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|55376451|ref|YP_134303.1|	-	0.0047	15.8	0.3	0.0097	14.7	0.2	1.5	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.19	gi|55376451|ref|YP_134303.1|	-	0.0065	15.4	0.2	0.072	11.9	0.1	2.4	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|55376451|ref|YP_134303.1|	-	0.031	14.5	0.1	0.25	11.6	0.1	2.1	1	1	0	1	1	1	0	Putative	NAD(P)-binding
FAD_oxidored	PF12831.2	gi|55376451|ref|YP_134303.1|	-	0.034	13.2	0.0	0.059	12.4	0.0	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|55376451|ref|YP_134303.1|	-	0.042	13.4	0.9	0.061	12.8	0.1	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.13	gi|55376451|ref|YP_134303.1|	-	0.055	13.1	0.2	0.12	11.9	0.0	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|55376451|ref|YP_134303.1|	-	0.064	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF63	PF01889.12	gi|55376452|ref|YP_134304.1|	-	1.8e-26	93.8	5.3	2e-26	93.6	3.7	1.0	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
HTH_11	PF08279.7	gi|55376453|ref|YP_134305.1|	-	0.0017	17.9	1.1	0.24	11.0	0.0	2.3	1	1	1	2	2	2	2	HTH	domain
HTH_23	PF13384.1	gi|55376453|ref|YP_134305.1|	-	0.013	15.1	0.4	2.2	8.0	0.0	2.9	3	0	0	3	3	3	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|55376453|ref|YP_134305.1|	-	0.017	14.4	0.2	4.6	6.7	0.0	2.9	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
GerE	PF00196.14	gi|55376453|ref|YP_134305.1|	-	0.033	13.5	0.0	0.18	11.1	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Mga	PF08280.6	gi|55376453|ref|YP_134305.1|	-	0.054	13.2	0.0	0.15	11.8	0.0	1.7	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_5	PF01022.15	gi|55376453|ref|YP_134305.1|	-	0.056	13.1	0.0	0.22	11.2	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4_2	PF08281.7	gi|55376453|ref|YP_134305.1|	-	0.064	12.7	0.1	0.76	9.2	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
Rrf2	PF02082.15	gi|55376453|ref|YP_134305.1|	-	0.094	12.8	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_20	PF12840.2	gi|55376453|ref|YP_134305.1|	-	0.13	12.0	0.1	0.16	11.7	0.0	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
Hydrolase	PF00702.21	gi|55376454|ref|YP_134306.1|	-	2.2e-52	178.6	5.3	6.1e-52	177.1	3.7	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.15	gi|55376454|ref|YP_134306.1|	-	2.8e-52	177.0	0.1	8.9e-52	175.4	0.1	1.9	1	0	0	1	1	1	1	E1-E2	ATPase
HMA	PF00403.21	gi|55376454|ref|YP_134306.1|	-	1.7e-27	95.3	0.6	2e-12	47.0	0.0	3.1	3	0	0	3	3	3	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|55376454|ref|YP_134306.1|	-	2.4e-18	66.9	0.0	7.6e-18	65.3	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|55376454|ref|YP_134306.1|	-	1.2e-07	31.5	0.9	0.011	15.3	0.7	2.8	3	0	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|55376454|ref|YP_134306.1|	-	0.012	15.4	2.6	0.058	13.2	0.0	3.4	4	0	0	4	4	4	0	Haloacid	dehalogenase-like	hydrolase
DUF965	PF06135.7	gi|55376454|ref|YP_134306.1|	-	0.05	13.6	0.1	12	6.0	0.0	2.9	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF965)
DUF464	PF04327.7	gi|55376454|ref|YP_134306.1|	-	0.22	11.7	1.0	2.7	8.3	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF464)
HTH_AsnC-type	PF13404.1	gi|55376455|ref|YP_134307.1|	-	3.7e-15	55.1	0.5	3.7e-15	55.1	0.3	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|55376455|ref|YP_134307.1|	-	1.2e-14	53.3	0.0	2e-14	52.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|55376455|ref|YP_134307.1|	-	3e-06	26.9	0.0	4.9e-06	26.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376455|ref|YP_134307.1|	-	3.8e-06	26.4	0.1	5.8e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|55376455|ref|YP_134307.1|	-	5e-06	26.0	0.0	7.6e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
YHS	PF04945.8	gi|55376455|ref|YP_134307.1|	-	0.00033	20.4	0.6	0.00065	19.4	0.2	1.6	2	0	0	2	2	1	1	YHS	domain
zf-FCS	PF06467.9	gi|55376455|ref|YP_134307.1|	-	0.00038	20.0	2.4	0.00061	19.3	1.4	1.5	2	0	0	2	2	2	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
MarR	PF01047.17	gi|55376455|ref|YP_134307.1|	-	0.0021	17.7	0.0	0.0038	16.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
LIM	PF00412.17	gi|55376455|ref|YP_134307.1|	-	0.0044	17.0	1.9	0.0071	16.3	1.3	1.3	1	0	0	1	1	1	1	LIM	domain
Arc_trans_TRASH	PF08394.5	gi|55376455|ref|YP_134307.1|	-	0.022	14.9	2.7	0.034	14.2	1.9	1.4	1	0	0	1	1	1	0	Archaeal	TRASH	domain
HTH_27	PF13463.1	gi|55376455|ref|YP_134307.1|	-	0.03	14.6	0.0	0.05	13.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|55376455|ref|YP_134307.1|	-	0.032	14.2	0.0	0.05	13.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|55376455|ref|YP_134307.1|	-	0.045	13.4	0.0	0.077	12.7	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
ATPase-cat_bd	PF12156.3	gi|55376455|ref|YP_134307.1|	-	0.074	13.5	2.2	0.14	12.7	1.5	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_IclR	PF09339.5	gi|55376455|ref|YP_134307.1|	-	0.091	12.3	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HMA	PF00403.21	gi|55376456|ref|YP_134308.1|	-	5.6e-19	68.0	1.6	6.2e-19	67.8	1.1	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
DUF4245	PF14030.1	gi|55376456|ref|YP_134308.1|	-	0.093	12.4	2.0	0.099	12.3	1.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4245)
Aconitase	PF00330.15	gi|55376457|ref|YP_134309.1|	-	5e-136	453.8	0.0	4.1e-93	312.4	0.0	2.1	2	0	0	2	2	2	2	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|55376457|ref|YP_134309.1|	-	6.1e-40	136.3	0.0	1.2e-39	135.4	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
SHOCT	PF09851.4	gi|55376458|ref|YP_134310.1|	-	6.3e-11	41.3	0.2	8.6e-11	40.9	0.1	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
GvpG	PF05120.7	gi|55376458|ref|YP_134310.1|	-	0.001	18.8	0.3	0.0028	17.4	0.2	1.7	1	1	0	1	1	1	1	Gas	vesicle	protein	G
DUF1707	PF08044.6	gi|55376458|ref|YP_134310.1|	-	0.0064	16.2	2.4	0.0064	16.2	1.6	1.9	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
UPF0093	PF03653.8	gi|55376458|ref|YP_134310.1|	-	0.028	14.3	1.5	0.59	10.0	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0093)
Caleosin	PF05042.8	gi|55376458|ref|YP_134310.1|	-	0.1	12.1	0.0	0.16	11.5	0.0	1.2	1	0	0	1	1	1	0	Caleosin	related	protein
DoxX	PF07681.7	gi|55376459|ref|YP_134311.1|	-	1.4e-11	44.6	11.2	1.4e-11	44.6	7.7	1.9	2	0	0	2	2	2	1	DoxX
HMA	PF00403.21	gi|55376461|ref|YP_134313.1|	-	1e-18	67.1	1.7	1.2e-18	67.0	1.2	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
MafB19-deam	PF14437.1	gi|55376461|ref|YP_134313.1|	-	0.064	12.8	0.4	0.074	12.6	0.3	1.2	1	0	0	1	1	1	0	MafB19-like	deaminase
Thioredoxin_3	PF13192.1	gi|55376461|ref|YP_134313.1|	-	0.15	11.9	0.6	0.24	11.2	0.4	1.5	1	1	0	1	1	1	0	Thioredoxin	domain
DUF2997	PF11211.3	gi|55376461|ref|YP_134313.1|	-	8.4	5.8	6.6	3.3	7.1	2.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2997)
E1-E2_ATPase	PF00122.15	gi|55376462|ref|YP_134314.1|	-	1.9e-53	180.8	6.4	8.1e-53	178.8	0.8	2.5	2	0	0	2	2	2	2	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55376462|ref|YP_134314.1|	-	1.2e-46	159.8	7.9	2.1e-46	159.0	5.5	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|55376462|ref|YP_134314.1|	-	8.8e-19	68.4	0.3	1.9e-18	67.3	0.2	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|55376462|ref|YP_134314.1|	-	3.8e-05	23.3	0.1	0.0013	18.3	0.1	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DNA_photolyase	PF00875.13	gi|55376462|ref|YP_134314.1|	-	0.097	12.4	0.0	0.27	10.9	0.0	1.7	1	0	0	1	1	1	0	DNA	photolyase
PadR	PF03551.9	gi|55376464|ref|YP_134316.1|	-	3.6e-14	52.2	0.5	4.4e-14	51.9	0.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|55376464|ref|YP_134316.1|	-	0.0016	18.6	0.0	0.0025	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|55376464|ref|YP_134316.1|	-	0.0053	16.5	0.0	0.0069	16.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
E1-E2_ATPase	PF00122.15	gi|55376465|ref|YP_134317.1|	-	7.4e-38	129.8	4.6	1.3e-37	129.0	3.2	1.4	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55376465|ref|YP_134317.1|	-	3.9e-33	115.6	6.5	7e-33	114.8	4.5	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55376465|ref|YP_134317.1|	-	1.1e-09	38.2	0.5	4.6e-09	36.2	0.1	2.3	2	0	0	2	2	2	1	Heavy-metal-associated	domain
HAD	PF12710.2	gi|55376465|ref|YP_134317.1|	-	1.2e-09	38.6	0.2	4.4e-09	36.7	0.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Stimulus_sens_1	PF13756.1	gi|55376465|ref|YP_134317.1|	-	0.0048	17.2	0.2	0.073	13.4	0.0	2.4	2	0	0	2	2	2	1	Stimulus-sensing	domain
Hydrolase_3	PF08282.7	gi|55376465|ref|YP_134317.1|	-	0.021	14.4	0.1	0.044	13.3	0.1	1.5	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
PMSR	PF01625.16	gi|55376465|ref|YP_134317.1|	-	0.2	11.5	0.0	0.49	10.2	0.0	1.7	1	0	0	1	1	1	0	Peptide	methionine	sulfoxide	reductase
Sugar_tr	PF00083.19	gi|55376466|ref|YP_134318.1|	-	0.083	11.4	1.7	0.087	11.3	1.2	1.0	1	0	0	1	1	1	0	Sugar	(and	other)	transporter
Peptidase_C33	PF05412.7	gi|55376467|ref|YP_134319.1|	-	0.065	13.0	0.4	0.11	12.3	0.2	1.3	1	0	0	1	1	1	0	Equine	arterivirus	Nsp2-type	cysteine	proteinase
DUF4231	PF14015.1	gi|55376468|ref|YP_134320.1|	-	3.8	7.5	5.7	0.48	10.4	0.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4231)
DUF4131	PF13567.1	gi|55376468|ref|YP_134320.1|	-	6.9	6.0	10.9	3	7.2	0.5	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Copper-bind	PF00127.15	gi|55376469|ref|YP_134321.1|	-	1.2e-12	47.8	0.2	1.7e-12	47.3	0.1	1.3	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|55376469|ref|YP_134321.1|	-	0.0054	16.5	0.3	0.0098	15.7	0.2	1.4	1	1	0	1	1	1	1	Cupredoxin-like	domain
PKD	PF00801.15	gi|55376469|ref|YP_134321.1|	-	0.023	14.4	2.0	0.3	10.8	1.4	2.5	1	1	0	1	1	1	0	PKD	domain
TAT_signal	PF10518.4	gi|55376469|ref|YP_134321.1|	-	0.17	11.9	1.7	0.49	10.5	1.2	1.8	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BLOC1_2	PF10046.4	gi|55376470|ref|YP_134322.1|	-	8.2e-05	22.6	3.7	0.36	10.9	0.0	3.0	2	1	1	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Hrs_helical	PF12210.3	gi|55376470|ref|YP_134322.1|	-	0.0018	18.5	0.7	0.0035	17.5	0.1	1.8	2	0	0	2	2	2	1	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
CENP-Q	PF13094.1	gi|55376470|ref|YP_134322.1|	-	0.0028	17.6	0.1	1.2	9.1	0.0	2.3	2	1	0	2	2	2	2	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Occludin_ELL	PF07303.8	gi|55376470|ref|YP_134322.1|	-	0.016	15.9	2.4	0.27	11.9	0.3	2.3	2	0	0	2	2	2	0	Occludin	homology	domain
Terminase_GpA	PF05876.7	gi|55376470|ref|YP_134322.1|	-	0.038	12.3	0.3	0.057	11.7	0.2	1.2	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
DUF1152	PF06626.7	gi|55376470|ref|YP_134322.1|	-	0.044	12.8	0.0	0.15	11.1	0.0	1.8	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1152)
HAUS6_N	PF14661.1	gi|55376470|ref|YP_134322.1|	-	0.1	11.9	3.8	0.12	11.7	0.5	2.0	2	0	0	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Sec8_exocyst	PF04048.9	gi|55376470|ref|YP_134322.1|	-	0.14	11.8	2.8	0.64	9.6	0.1	2.7	1	1	1	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
Prefoldin	PF02996.12	gi|55376470|ref|YP_134322.1|	-	0.18	11.4	2.9	1.5	8.4	0.4	2.5	2	1	0	2	2	2	0	Prefoldin	subunit
DUF4600	PF15372.1	gi|55376470|ref|YP_134322.1|	-	0.2	11.8	2.4	0.25	11.5	0.2	2.2	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4600)
Mod_r	PF07200.8	gi|55376470|ref|YP_134322.1|	-	0.24	11.3	5.1	0.082	12.8	1.3	1.8	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
Mem_trans	PF03547.13	gi|55376471|ref|YP_134323.1|	-	0.39	8.9	3.8	0.41	8.9	2.7	1.0	1	0	0	1	1	1	0	Membrane	transport	protein
CcoS	PF03597.10	gi|55376471|ref|YP_134323.1|	-	1.2	8.6	3.6	0.92	9.0	0.2	2.1	2	0	0	2	2	2	0	Cytochrome	oxidase	maturation	protein	cbb3-type
B12D	PF06522.6	gi|55376471|ref|YP_134323.1|	-	1.4	8.7	4.3	1.1	8.9	2.3	1.3	1	1	0	1	1	1	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
PrgI	PF12666.2	gi|55376471|ref|YP_134323.1|	-	2.3	8.3	5.7	2.7	8.1	4.0	1.1	1	0	0	1	1	1	0	PrgI	family	protein
DUF3043	PF11241.3	gi|55376471|ref|YP_134323.1|	-	6.6	6.2	5.5	7.5	6.1	3.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
SdpI	PF13630.1	gi|55376471|ref|YP_134323.1|	-	9	6.0	7.3	11	5.7	5.1	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
Cu-oxidase_2	PF07731.9	gi|55376472|ref|YP_134324.1|	-	5.7e-31	106.8	15.1	4.9e-19	68.2	1.9	3.3	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_3	PF07732.10	gi|55376472|ref|YP_134324.1|	-	1.9e-23	82.4	8.6	9.3e-20	70.5	1.2	2.6	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase	PF00394.17	gi|55376472|ref|YP_134324.1|	-	1.5e-11	44.4	0.1	6.4e-11	42.4	0.0	1.9	2	0	0	2	2	2	1	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|55376472|ref|YP_134324.1|	-	5.2e-05	23.0	0.0	0.32	10.9	0.0	2.6	2	1	0	2	2	2	2	Cupredoxin-like	domain
TAT_signal	PF10518.4	gi|55376472|ref|YP_134324.1|	-	0.012	15.5	3.9	0.026	14.5	2.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Abi	PF02517.11	gi|55376473|ref|YP_134325.1|	-	4e-18	65.3	2.6	4e-18	65.3	1.8	2.5	3	0	0	3	3	3	1	CAAX	protease	self-immunity
Phage_Coat_B	PF05356.6	gi|55376473|ref|YP_134325.1|	-	2	8.1	6.0	0.32	10.7	0.4	2.4	3	0	0	3	3	3	0	Phage	Coat	protein	B
DsbB	PF02600.11	gi|55376474|ref|YP_134326.1|	-	2.3e-27	95.6	15.1	5.3e-27	94.5	10.5	1.4	1	1	0	1	1	1	1	Disulfide	bond	formation	protein	DsbB
O-antigen_lig	PF13425.1	gi|55376474|ref|YP_134326.1|	-	4.5	7.2	9.0	0.16	11.9	0.9	2.1	1	1	1	2	2	2	0	O-antigen	ligase	like	membrane	protein
Thioredoxin_4	PF13462.1	gi|55376475|ref|YP_134327.1|	-	9.1e-23	81.0	0.1	2.3e-22	79.7	0.0	1.6	2	0	0	2	2	2	1	Thioredoxin
DSBA	PF01323.15	gi|55376475|ref|YP_134327.1|	-	4.9e-08	32.7	1.6	1.1e-06	28.3	0.1	2.2	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|55376475|ref|YP_134327.1|	-	1.7e-05	24.9	0.1	0.00013	22.1	0.0	2.4	2	1	0	2	2	2	1	Thioredoxin-like	domain
HNH_5	PF14279.1	gi|55376475|ref|YP_134327.1|	-	0.00062	19.7	0.0	0.0015	18.5	0.0	1.7	1	1	0	1	1	1	1	HNH	endonuclease
zf-Di19	PF05605.7	gi|55376475|ref|YP_134327.1|	-	0.001	19.1	3.6	5.2	7.2	0.2	3.2	3	0	0	3	3	3	1	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.1	gi|55376475|ref|YP_134327.1|	-	0.003	17.7	6.7	4.2	7.9	0.1	3.4	3	0	0	3	3	3	2	C2H2-type	zinc	finger
TAT_signal	PF10518.4	gi|55376475|ref|YP_134327.1|	-	0.036	14.0	6.4	0.036	14.0	4.4	2.9	3	1	1	4	4	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Lar_restr_allev	PF14354.1	gi|55376475|ref|YP_134327.1|	-	0.058	13.7	1.1	0.75	10.1	0.4	2.4	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
Thioredoxin_3	PF13192.1	gi|55376475|ref|YP_134327.1|	-	0.29	10.9	1.8	5	6.9	0.0	3.1	4	0	0	4	4	4	0	Thioredoxin	domain
zf-C3HC4_3	PF13920.1	gi|55376475|ref|YP_134327.1|	-	1.1	9.0	3.9	6.8	6.4	1.5	2.4	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-H2C2_2	PF13465.1	gi|55376475|ref|YP_134327.1|	-	7.5	7.0	6.6	10	6.6	0.1	2.7	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-C2H2	PF00096.21	gi|55376475|ref|YP_134327.1|	-	9.5	6.7	8.0	32	5.1	0.1	3.4	3	1	0	3	3	3	0	Zinc	finger,	C2H2	type
COX15-CtaA	PF02628.10	gi|55376476|ref|YP_134328.1|	-	2.1e-35	122.0	14.1	2.4e-35	121.8	9.8	1.1	1	0	0	1	1	1	1	Cytochrome	oxidase	assembly	protein
TFIIB	PF00382.14	gi|55376477|ref|YP_134329.1|	-	4.6e-36	122.4	0.2	2.9e-18	65.4	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|55376477|ref|YP_134329.1|	-	6.3e-15	54.2	1.4	1.2e-14	53.3	1.0	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|55376477|ref|YP_134329.1|	-	0.0015	18.4	0.1	0.0038	17.1	0.0	1.7	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
IBR	PF01485.16	gi|55376477|ref|YP_134329.1|	-	0.013	15.3	0.6	0.023	14.5	0.4	1.3	1	0	0	1	1	1	0	IBR	domain
zinc-ribbons_6	PF07191.7	gi|55376477|ref|YP_134329.1|	-	0.025	14.3	0.7	0.047	13.4	0.5	1.4	1	0	0	1	1	1	0	zinc-ribbons
Sigma70_r4	PF04545.11	gi|55376477|ref|YP_134329.1|	-	0.066	12.5	0.1	0.22	10.8	0.1	1.9	1	0	0	1	1	1	0	Sigma-70,	region	4
DnaG_DnaB_bind	PF08278.6	gi|55376477|ref|YP_134329.1|	-	0.092	12.9	0.5	13	6.0	0.0	3.0	3	0	0	3	3	3	0	DNA	primase	DnaG	DnaB-binding
DZR	PF12773.2	gi|55376477|ref|YP_134329.1|	-	0.092	12.5	0.6	0.18	11.6	0.4	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|55376477|ref|YP_134329.1|	-	0.21	11.2	0.9	0.45	10.2	0.7	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PadR	PF03551.9	gi|55376478|ref|YP_134330.1|	-	0.009	15.7	0.0	0.42	10.4	0.0	2.2	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|55376478|ref|YP_134330.1|	-	0.023	15.0	0.0	0.028	14.7	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|55376479|ref|YP_134331.1|	-	3.9e-12	45.7	0.1	5.6e-12	45.2	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376479|ref|YP_134331.1|	-	6.2e-05	22.5	0.0	9.2e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|55376479|ref|YP_134331.1|	-	0.00025	20.5	0.2	0.0012	18.3	0.0	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|55376479|ref|YP_134331.1|	-	0.00027	20.5	0.0	0.0012	18.5	0.0	2.0	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
DUF1492	PF07374.6	gi|55376479|ref|YP_134331.1|	-	0.00045	20.2	0.0	0.0041	17.1	0.0	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1492)
HTH_7	PF02796.10	gi|55376479|ref|YP_134331.1|	-	0.029	14.2	0.0	0.25	11.2	0.0	2.3	3	0	0	3	3	3	0	Helix-turn-helix	domain	of	resolvase
PadR	PF03551.9	gi|55376479|ref|YP_134331.1|	-	0.071	12.8	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
FUR	PF01475.14	gi|55376479|ref|YP_134331.1|	-	0.12	12.2	0.0	0.18	11.7	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
7TMR-DISM_7TM	PF07695.6	gi|55376480|ref|YP_134332.1|	-	0.18	11.4	9.4	0.24	11.0	6.5	1.1	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
DUF981	PF06168.6	gi|55376480|ref|YP_134332.1|	-	0.35	10.6	9.0	0.41	10.3	6.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF981)
DUF3087	PF11286.3	gi|55376480|ref|YP_134332.1|	-	0.49	9.6	3.1	0.26	10.4	1.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3087)
YtpI	PF14007.1	gi|55376480|ref|YP_134332.1|	-	0.73	9.7	14.1	1.5	8.7	0.6	2.1	2	0	0	2	2	2	0	YtpI-like	protein
Yip1	PF04893.12	gi|55376480|ref|YP_134332.1|	-	1.4	8.4	14.7	1.5	8.2	10.2	1.1	1	0	0	1	1	1	0	Yip1	domain
DUF4199	PF13858.1	gi|55376480|ref|YP_134332.1|	-	1.7	8.5	11.6	0.1	12.5	3.3	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4199)
DUF3318	PF11780.3	gi|55376480|ref|YP_134332.1|	-	3.6	7.1	4.9	5.5	6.5	0.1	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3318)
DUF2648	PF10855.3	gi|55376480|ref|YP_134332.1|	-	8.2	5.9	9.1	0.88	9.0	1.2	2.7	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2648)
Arylsulfotran_2	PF14269.1	gi|55376481|ref|YP_134333.1|	-	3.7e-11	42.7	3.2	3.5e-09	36.2	0.1	3.1	2	1	1	3	3	3	2	Arylsulfotransferase	(ASST)
Arylsulfotrans	PF05935.6	gi|55376481|ref|YP_134333.1|	-	2e-08	33.1	0.9	7.7e-07	27.9	0.5	2.7	2	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
NHL	PF01436.16	gi|55376481|ref|YP_134333.1|	-	0.025	14.5	1.5	0.6	10.1	0.0	3.7	4	0	0	4	4	4	0	NHL	repeat
Lactonase	PF10282.4	gi|55376481|ref|YP_134333.1|	-	0.03	13.4	0.0	0.045	12.8	0.0	1.3	1	0	0	1	1	1	0	Lactonase,	7-bladed	beta-propeller
SpoIIAA-like	PF11964.3	gi|55376482|ref|YP_134334.1|	-	7e-15	55.2	0.0	9e-15	54.9	0.0	1.1	1	0	0	1	1	1	1	SpoIIAA-like
Cation_efflux	PF01545.16	gi|55376483|ref|YP_134335.1|	-	4e-68	229.5	3.2	4.9e-68	229.2	2.2	1.0	1	0	0	1	1	1	1	Cation	efflux	family
IncA	PF04156.9	gi|55376483|ref|YP_134335.1|	-	0.052	13.1	1.6	0.06	12.9	0.1	1.7	2	0	0	2	2	2	0	IncA	protein
PGA2	PF07543.7	gi|55376484|ref|YP_134336.1|	-	0.047	13.4	0.0	0.067	12.9	0.0	1.3	1	0	0	1	1	1	0	Protein	trafficking	PGA2
E1-E2_ATPase	PF00122.15	gi|55376485|ref|YP_134337.1|	-	7.9e-60	201.7	0.2	1.5e-59	200.8	0.1	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55376485|ref|YP_134337.1|	-	2.1e-48	165.5	5.4	6.9e-48	163.8	2.7	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55376485|ref|YP_134337.1|	-	4e-31	106.9	1.7	1.3e-14	54.0	0.0	3.5	4	0	0	4	4	4	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|55376485|ref|YP_134337.1|	-	1.6e-15	57.8	0.0	4.8e-15	56.2	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|55376485|ref|YP_134337.1|	-	0.0011	18.5	1.0	0.0071	15.9	0.2	2.3	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DUF2946	PF11162.3	gi|55376485|ref|YP_134337.1|	-	6.5	6.9	5.5	22	5.2	3.8	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2946)
YtpI	PF14007.1	gi|55376486|ref|YP_134338.1|	-	0.002	18.0	0.7	0.0023	17.7	0.5	1.0	1	0	0	1	1	1	1	YtpI-like	protein
CcoS	PF03597.10	gi|55376486|ref|YP_134338.1|	-	0.15	11.5	0.1	0.15	11.5	0.0	1.8	2	0	0	2	2	2	0	Cytochrome	oxidase	maturation	protein	cbb3-type
SecE	PF00584.15	gi|55376486|ref|YP_134338.1|	-	0.39	10.3	6.1	2.5	7.7	1.1	2.1	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
SdpI	PF13630.1	gi|55376486|ref|YP_134338.1|	-	0.46	10.2	4.0	0.52	10.0	2.8	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
Cyt_c_ox_IV	PF12270.3	gi|55376487|ref|YP_134339.1|	-	0.00094	18.9	0.8	0.00094	18.9	0.6	2.0	1	1	1	2	2	2	1	Cytochrome	c	oxidase	subunit	IV
PetG	PF02529.10	gi|55376487|ref|YP_134339.1|	-	0.011	15.2	1.4	0.039	13.4	1.0	1.9	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
COX3	PF00510.13	gi|55376487|ref|YP_134339.1|	-	0.038	13.4	0.0	0.052	12.9	0.0	1.2	1	0	0	1	1	1	0	Cytochrome	c	oxidase	subunit	III
Claudin_2	PF13903.1	gi|55376487|ref|YP_134339.1|	-	0.72	9.5	7.8	5	6.7	5.4	2.1	1	1	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF872	PF05915.7	gi|55376487|ref|YP_134339.1|	-	2.2	8.1	7.5	0.91	9.4	1.0	2.2	1	1	2	3	3	3	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF2721	PF11026.3	gi|55376487|ref|YP_134339.1|	-	4	7.0	5.2	5.4	6.6	0.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2721)
ATP1G1_PLM_MAT8	PF02038.11	gi|55376487|ref|YP_134339.1|	-	8	5.5	8.3	4.1	6.4	0.2	3.0	3	0	0	3	3	3	0	ATP1G1/PLM/MAT8	family
zf-C2H2_4	PF13894.1	gi|55376488|ref|YP_134340.1|	-	0.003	17.7	0.2	0.0052	17.0	0.2	1.4	1	0	0	1	1	1	1	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|55376488|ref|YP_134340.1|	-	0.018	15.3	0.3	0.027	14.8	0.2	1.3	1	0	0	1	1	1	0	Zinc	finger,	C2H2	type
Iron_transport	PF10634.4	gi|55376490|ref|YP_134342.1|	-	5.9e-08	32.7	0.0	6e-07	29.4	0.0	2.1	2	0	0	2	2	2	1	Fe2+	transport	protein
TAT_signal	PF10518.4	gi|55376490|ref|YP_134342.1|	-	0.074	13.0	0.6	0.074	13.0	0.4	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Iron_transport	PF10634.4	gi|55376491|ref|YP_134343.1|	-	2.3e-05	24.3	0.0	0.00021	21.2	0.0	2.2	2	1	0	2	2	2	1	Fe2+	transport	protein
TAT_signal	PF10518.4	gi|55376491|ref|YP_134343.1|	-	0.16	12.0	0.9	0.36	10.9	0.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TAT_signal	PF10518.4	gi|55376492|ref|YP_134344.1|	-	0.013	15.4	0.5	0.032	14.2	0.4	1.7	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PEMT	PF04191.8	gi|55376493|ref|YP_134345.1|	-	2.8e-14	53.0	0.3	5e-14	52.2	0.2	1.4	1	0	0	1	1	1	1	Phospholipid	methyltransferase
ICMT	PF04140.9	gi|55376493|ref|YP_134345.1|	-	0.018	15.2	0.0	0.033	14.4	0.0	1.4	1	0	0	1	1	1	0	Isoprenylcysteine	carboxyl	methyltransferase	(ICMT)	family
DUF3953	PF13129.1	gi|55376493|ref|YP_134345.1|	-	0.043	13.4	0.4	0.32	10.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3953)
DUF3995	PF13160.1	gi|55376494|ref|YP_134346.1|	-	1.8	8.6	8.3	0.85	9.6	4.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3995)
DUF4131	PF13567.1	gi|55376494|ref|YP_134346.1|	-	2.6	7.4	6.2	4	6.8	4.3	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
EmrE	PF13536.1	gi|55376494|ref|YP_134346.1|	-	2.9	8.1	8.5	1.2	9.4	3.6	1.8	1	1	1	2	2	2	0	Multidrug	resistance	efflux	transporter
HTH_24	PF13412.1	gi|55376495|ref|YP_134347.1|	-	1.9e-09	36.7	0.0	0.00031	20.0	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|55376495|ref|YP_134347.1|	-	8.1e-09	35.1	0.5	0.0028	17.4	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376495|ref|YP_134347.1|	-	1.4e-06	27.8	0.0	0.043	13.4	0.0	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|55376495|ref|YP_134347.1|	-	1.4e-06	27.8	0.2	0.094	12.4	0.0	2.9	3	1	0	3	3	3	2	MarR	family
MarR	PF01047.17	gi|55376495|ref|YP_134347.1|	-	0.0013	18.4	0.0	0.032	13.9	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|55376495|ref|YP_134347.1|	-	0.0021	17.6	0.2	0.3	10.6	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.1	gi|55376495|ref|YP_134347.1|	-	0.0049	16.8	0.0	1.2	9.2	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|55376495|ref|YP_134347.1|	-	0.013	15.2	0.0	0.35	10.5	0.0	2.4	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|55376495|ref|YP_134347.1|	-	0.037	14.3	0.0	3.6	7.9	0.0	2.4	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.12	gi|55376495|ref|YP_134347.1|	-	0.049	13.1	0.0	0.089	12.3	0.0	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_DeoR	PF08220.7	gi|55376495|ref|YP_134347.1|	-	0.052	13.0	0.1	0.38	10.3	0.0	2.2	2	1	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.7	gi|55376495|ref|YP_134347.1|	-	0.11	12.0	0.0	8.6	6.0	0.0	2.3	2	0	0	2	2	2	0	HTH	DNA	binding	domain
PadR	PF03551.9	gi|55376496|ref|YP_134348.1|	-	1.3e-15	56.9	0.6	1.7e-15	56.4	0.4	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|55376496|ref|YP_134348.1|	-	0.001	18.8	0.1	0.0016	18.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|55376496|ref|YP_134348.1|	-	0.024	14.9	0.1	0.031	14.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1931	PF09123.6	gi|55376497|ref|YP_134349.1|	-	0.00025	20.9	0.4	0.00027	20.8	0.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.18	gi|55376497|ref|YP_134349.1|	-	0.0021	18.0	0.0	0.0029	17.6	0.0	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.19	gi|55376497|ref|YP_134349.1|	-	0.0027	17.7	0.0	0.0031	17.6	0.0	1.3	1	1	0	1	1	1	1	Core	histone	H2A/H2B/H3/H4
SBP_bac_7	PF03480.8	gi|55376497|ref|YP_134349.1|	-	0.084	11.9	0.0	0.098	11.7	0.0	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
Exonuc_VII_L	PF02601.10	gi|55376498|ref|YP_134350.1|	-	3.4e-50	171.0	0.5	4.5e-50	170.6	0.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.1	gi|55376498|ref|YP_134350.1|	-	6e-23	80.5	0.0	9.3e-23	79.9	0.0	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti-codon	PF01336.20	gi|55376498|ref|YP_134350.1|	-	0.00044	20.0	0.0	0.00077	19.2	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Exonuc_VII_S	PF02609.11	gi|55376499|ref|YP_134351.1|	-	1.4e-12	47.1	3.0	1.5e-12	47.0	2.1	1.0	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
TBCA	PF02970.11	gi|55376499|ref|YP_134351.1|	-	0.03	14.3	0.4	0.033	14.2	0.3	1.1	1	0	0	1	1	1	0	Tubulin	binding	cofactor	A
DUF4342	PF14242.1	gi|55376499|ref|YP_134351.1|	-	0.065	13.0	0.1	0.11	12.2	0.0	1.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4342)
Rop	PF01815.11	gi|55376499|ref|YP_134351.1|	-	0.12	11.8	0.3	0.13	11.7	0.2	1.2	1	0	0	1	1	1	0	Rop	protein
XhlA	PF10779.4	gi|55376499|ref|YP_134351.1|	-	0.14	12.0	0.4	0.18	11.7	0.3	1.2	1	0	0	1	1	1	0	Haemolysin	XhlA
Unstab_antitox	PF09720.5	gi|55376499|ref|YP_134351.1|	-	0.77	9.4	3.1	1.1	8.9	2.2	1.4	1	1	0	1	1	1	0	Putative	addiction	module	component
DUF3267	PF11667.3	gi|55376500|ref|YP_134352.1|	-	0.013	15.6	0.2	0.022	14.9	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3267)
EFG_C	PF00679.19	gi|55376502|ref|YP_134354.1|	-	0.0044	16.8	0.0	0.0048	16.7	0.0	1.0	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
DUF4349	PF14257.1	gi|55376502|ref|YP_134354.1|	-	0.11	11.7	0.0	0.11	11.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
Secretin_N_2	PF07655.8	gi|55376502|ref|YP_134354.1|	-	0.12	12.7	0.1	0.14	12.6	0.1	1.1	1	0	0	1	1	1	0	Secretin	N-terminal	domain
TrbC	PF04956.8	gi|55376503|ref|YP_134355.1|	-	0.029	14.3	1.2	0.043	13.8	0.8	1.4	1	1	0	1	1	1	0	TrbC/VIRB2	family
DUF916	PF06030.7	gi|55376504|ref|YP_134356.1|	-	0.38	10.5	1.4	0.95	9.2	0.4	2.0	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF916)
Myco_19_kDa	PF05481.7	gi|55376505|ref|YP_134357.1|	-	0.018	14.8	0.5	0.025	14.3	0.4	1.3	1	0	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
TraC_F_IV	PF11130.3	gi|55376507|ref|YP_134359.1|	-	0.0047	16.4	0.3	0.023	14.1	0.1	2.1	1	1	1	2	2	2	1	F	pilus	assembly	Type-IV	secretion	system	for	plasmid	transfer
AAA_10	PF12846.2	gi|55376508|ref|YP_134360.1|	-	2e-46	158.8	0.2	6.2e-46	157.2	0.0	1.7	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|55376508|ref|YP_134360.1|	-	0.00012	22.2	0.1	0.21	11.7	0.0	2.9	3	0	0	3	3	3	2	AAA	domain
AAA_16	PF13191.1	gi|55376508|ref|YP_134360.1|	-	0.0016	18.4	0.1	0.094	12.6	0.0	2.6	1	1	0	1	1	1	1	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.4	gi|55376508|ref|YP_134360.1|	-	0.0037	15.9	0.3	0.036	12.7	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CENP-F_leu_zip	PF10473.4	gi|55376508|ref|YP_134360.1|	-	0.016	15.0	0.5	0.016	15.0	0.4	1.8	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF853	PF05872.7	gi|55376508|ref|YP_134360.1|	-	0.049	11.9	1.4	0.11	10.8	0.0	1.9	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
DUF2791	PF10923.3	gi|55376508|ref|YP_134360.1|	-	0.067	11.7	0.1	0.2	10.1	0.0	1.7	2	0	0	2	2	2	0	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_10	PF12846.2	gi|55376509|ref|YP_134361.1|	-	1.7e-17	63.8	0.6	5.2e-17	62.2	0.1	1.9	2	0	0	2	2	2	1	AAA-like	domain
T4SS-DNA_transf	PF02534.9	gi|55376509|ref|YP_134361.1|	-	3.3e-05	22.6	0.0	6.3e-05	21.7	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
DUF87	PF01935.12	gi|55376509|ref|YP_134361.1|	-	0.00022	21.1	0.0	0.0027	17.5	0.0	2.5	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
TraG-D_C	PF12696.2	gi|55376509|ref|YP_134361.1|	-	0.0069	16.2	0.0	0.016	15.0	0.0	1.5	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
Pox_D5	PF03288.11	gi|55376509|ref|YP_134361.1|	-	0.011	16.0	0.0	0.025	14.8	0.0	1.6	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
FlxA	PF14282.1	gi|55376510|ref|YP_134362.1|	-	0.00017	21.5	1.2	0.00034	20.5	0.8	1.5	1	0	0	1	1	1	1	FlxA-like	protein
DUF4164	PF13747.1	gi|55376510|ref|YP_134362.1|	-	0.0063	16.6	9.5	0.0063	16.6	6.6	3.6	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4164)
DUF1664	PF07889.7	gi|55376510|ref|YP_134362.1|	-	0.011	15.4	1.1	0.029	14.1	0.8	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.6	gi|55376510|ref|YP_134362.1|	-	0.043	13.7	1.9	0.088	12.7	0.2	2.2	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF16	PF01519.11	gi|55376510|ref|YP_134362.1|	-	0.054	13.7	1.2	8.7	6.6	0.5	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF16
Spc7	PF08317.6	gi|55376510|ref|YP_134362.1|	-	0.14	10.7	4.0	0.25	9.9	2.8	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
TBPIP	PF07106.8	gi|55376510|ref|YP_134362.1|	-	0.15	11.5	3.3	0.31	10.5	2.3	1.5	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
NPV_P10	PF05531.7	gi|55376510|ref|YP_134362.1|	-	0.18	12.0	0.1	1.1	9.5	0.1	2.3	2	0	0	2	2	1	0	Nucleopolyhedrovirus	P10	protein
Phage_GP20	PF06810.6	gi|55376510|ref|YP_134362.1|	-	0.22	10.9	3.4	0.5	9.8	2.4	1.5	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
Atg14	PF10186.4	gi|55376510|ref|YP_134362.1|	-	0.49	9.2	10.3	0.018	14.0	2.4	1.8	2	0	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF641	PF04859.7	gi|55376510|ref|YP_134362.1|	-	0.56	9.9	8.1	0.052	13.2	2.0	1.9	2	0	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
DUF972	PF06156.8	gi|55376510|ref|YP_134362.1|	-	0.62	10.4	9.7	0.095	13.0	3.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
Cep57_MT_bd	PF06657.8	gi|55376510|ref|YP_134362.1|	-	0.79	9.7	6.5	0.68	9.9	1.5	2.5	1	1	1	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
FliD_N	PF02465.13	gi|55376510|ref|YP_134362.1|	-	0.83	10.0	2.8	8.2	6.8	0.4	2.4	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
CENP-Q	PF13094.1	gi|55376510|ref|YP_134362.1|	-	0.83	9.6	16.1	0.66	9.9	6.7	2.4	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
CCDC144C	PF14915.1	gi|55376510|ref|YP_134362.1|	-	0.98	8.2	15.5	0.062	12.2	5.4	2.0	2	0	0	2	2	2	0	CCDC144C	protein	coiled-coil	region
ADIP	PF11559.3	gi|55376510|ref|YP_134362.1|	-	1.1	9.1	15.1	0.11	12.4	6.1	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
V_ATPase_I	PF01496.14	gi|55376510|ref|YP_134362.1|	-	1.1	7.0	3.1	1.6	6.4	2.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
APG6	PF04111.7	gi|55376510|ref|YP_134362.1|	-	1.1	8.1	10.2	0.25	10.3	4.4	1.7	2	0	0	2	2	2	0	Autophagy	protein	Apg6
IncA	PF04156.9	gi|55376510|ref|YP_134362.1|	-	1.9	8.0	12.1	0.053	13.1	2.9	2.1	2	0	0	2	2	2	0	IncA	protein
DUF4201	PF13870.1	gi|55376510|ref|YP_134362.1|	-	1.9	7.8	15.9	0.015	14.7	5.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
TMF_DNA_bd	PF12329.3	gi|55376510|ref|YP_134362.1|	-	3.7	7.4	14.5	0.082	12.7	5.0	2.0	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DUF812	PF05667.6	gi|55376510|ref|YP_134362.1|	-	3.7	5.9	11.4	0.038	12.5	2.6	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
Zn_Tnp_IS1595	PF12760.2	gi|55376513|ref|YP_134365.1|	-	0.17	11.7	0.4	0.17	11.7	0.3	2.4	3	0	0	3	3	3	0	Transposase	zinc-ribbon	domain
PHD	PF00628.24	gi|55376513|ref|YP_134365.1|	-	0.77	9.5	7.0	0.14	11.9	0.8	2.4	3	0	0	3	3	3	0	PHD-finger
Nudix_N_2	PF14803.1	gi|55376513|ref|YP_134365.1|	-	3.4	7.4	10.4	0.38	10.4	2.8	2.5	2	1	0	2	2	2	0	Nudix	N-terminal
zf-RING_5	PF14634.1	gi|55376513|ref|YP_134365.1|	-	5.4	6.8	6.3	18	5.1	0.5	2.9	3	1	0	3	3	3	0	zinc-RING	finger	domain
zf-ribbon_3	PF13248.1	gi|55376514|ref|YP_134366.1|	-	0.022	13.9	0.4	0.16	11.2	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
TC1	PF15063.1	gi|55376514|ref|YP_134366.1|	-	0.061	12.8	0.2	0.1	12.1	0.1	1.4	1	0	0	1	1	1	0	Thyroid	cancer	protein	1
Unstab_antitox	PF09720.5	gi|55376514|ref|YP_134366.1|	-	0.061	13.0	0.2	0.15	11.7	0.1	1.7	1	0	0	1	1	1	0	Putative	addiction	module	component
DNA_ligase_ZBD	PF03119.11	gi|55376514|ref|YP_134366.1|	-	0.079	12.6	0.8	0.24	11.1	0.5	1.9	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Nudix_N_2	PF14803.1	gi|55376514|ref|YP_134366.1|	-	0.27	10.9	0.3	0.27	10.9	0.2	2.0	2	0	0	2	2	2	0	Nudix	N-terminal
Cys_rich_CPXG	PF14255.1	gi|55376514|ref|YP_134366.1|	-	0.27	11.0	1.9	0.7	9.7	0.0	2.3	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
DUF2387	PF09526.5	gi|55376514|ref|YP_134366.1|	-	1.2	9.0	4.3	0.85	9.5	0.2	2.3	2	1	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
tRNA_anti-codon	PF01336.20	gi|55376517|ref|YP_134369.1|	-	0.00016	21.4	0.2	0.00031	20.5	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
AAA_4	PF04326.9	gi|55376518|ref|YP_134370.1|	-	1.7e-07	31.4	0.0	2.7e-07	30.7	0.0	1.3	1	0	0	1	1	1	1	Divergent	AAA	domain
TFIIB	PF00382.14	gi|55376520|ref|YP_134372.1|	-	3.4e-29	100.4	3.4	4.9e-14	51.8	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|55376520|ref|YP_134372.1|	-	1.1e-12	47.0	2.3	2.2e-12	46.0	1.6	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.14	gi|55376520|ref|YP_134372.1|	-	0.013	15.4	0.0	0.026	14.4	0.0	1.5	1	0	0	1	1	1	0	Cyclin,	C-terminal	domain
RB_B	PF01857.15	gi|55376520|ref|YP_134372.1|	-	0.019	14.4	0.0	0.032	13.7	0.0	1.2	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
DZR	PF12773.2	gi|55376520|ref|YP_134372.1|	-	0.059	13.1	1.2	0.13	12.1	0.9	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
PHF5	PF03660.9	gi|55376520|ref|YP_134372.1|	-	0.077	13.0	0.8	0.19	11.8	0.6	1.6	1	0	0	1	1	1	0	PHF5-like	protein
UPF0547	PF10571.4	gi|55376520|ref|YP_134372.1|	-	0.14	11.9	1.8	0.28	10.9	1.3	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|55376520|ref|YP_134372.1|	-	0.16	11.6	1.0	0.33	10.6	0.7	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.1	gi|55376520|ref|YP_134372.1|	-	0.27	11.0	2.6	0.58	9.9	1.8	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zinc-ribbons_6	PF07191.7	gi|55376520|ref|YP_134372.1|	-	0.59	9.9	3.8	0.21	11.4	0.5	1.8	2	0	0	2	2	2	0	zinc-ribbons
zf-ribbon_3	PF13248.1	gi|55376521|ref|YP_134373.1|	-	0.015	14.5	1.6	0.015	14.5	1.1	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.2	gi|55376521|ref|YP_134373.1|	-	0.067	13.0	0.5	0.067	13.0	0.3	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
Stc1	PF12898.2	gi|55376521|ref|YP_134373.1|	-	0.53	10.3	4.9	1.2	9.2	0.4	2.2	2	0	0	2	2	2	0	Stc1	domain
DUF2116	PF09889.4	gi|55376521|ref|YP_134373.1|	-	9.9	6.0	6.6	0.65	9.8	0.7	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Imm42	PF15601.1	gi|55376523|ref|YP_134375.1|	-	0.054	12.9	1.7	0.75	9.2	0.1	2.4	2	0	0	2	2	2	0	Immunity	protein	42
Ycf1	PF05758.7	gi|55376523|ref|YP_134375.1|	-	0.16	9.6	1.4	0.17	9.6	0.9	1.0	1	0	0	1	1	1	0	Ycf1
DUF1707	PF08044.6	gi|55376523|ref|YP_134375.1|	-	0.27	11.0	0.1	0.27	11.0	0.1	3.3	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1707)
YtxH	PF12732.2	gi|55376523|ref|YP_134375.1|	-	0.52	10.7	2.7	28	5.1	0.3	2.9	1	1	1	2	2	2	0	YtxH-like	protein
NIR_SIR_ferr	PF03460.12	gi|55376526|ref|YP_134378.1|	-	0.084	12.5	0.0	2.8	7.6	0.0	2.2	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
SBP_bac_1	PF01547.20	gi|55376527|ref|YP_134379.1|	-	0.059	13.0	0.0	0.098	12.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
HTH_10	PF04967.7	gi|55376529|ref|YP_134381.1|	-	3.2e-15	55.4	0.0	7.1e-15	54.3	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|55376529|ref|YP_134381.1|	-	8.1e-05	22.2	0.0	0.00026	20.5	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_30	PF13556.1	gi|55376529|ref|YP_134381.1|	-	0.00013	21.4	0.1	0.0004	19.9	0.1	1.8	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_20	PF12840.2	gi|55376529|ref|YP_134381.1|	-	0.0036	17.0	0.4	0.011	15.4	0.0	2.0	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_8	PF02954.14	gi|55376529|ref|YP_134381.1|	-	0.0038	16.7	0.5	0.0073	15.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	Fis	family
HTH_psq	PF05225.11	gi|55376529|ref|YP_134381.1|	-	0.013	15.0	0.6	0.058	12.9	0.0	2.2	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
HTH_24	PF13412.1	gi|55376529|ref|YP_134381.1|	-	0.016	14.5	0.0	0.028	13.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|55376529|ref|YP_134381.1|	-	0.065	12.8	0.0	0.17	11.5	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376529|ref|YP_134381.1|	-	0.083	12.5	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_17	PF12728.2	gi|55376529|ref|YP_134381.1|	-	0.095	12.9	0.1	0.32	11.2	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|55376529|ref|YP_134381.1|	-	0.1	12.1	0.0	0.43	10.0	0.0	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_28	PF13518.1	gi|55376529|ref|YP_134381.1|	-	0.11	12.5	0.0	0.25	11.3	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
E1-E2_ATPase	PF00122.15	gi|55376530|ref|YP_134382.1|	-	5.1e-60	202.3	0.1	1.1e-59	201.3	0.1	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55376530|ref|YP_134382.1|	-	3.4e-46	158.3	5.5	3.4e-46	158.3	3.8	2.4	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|55376530|ref|YP_134382.1|	-	6.2e-15	55.8	0.0	1.9e-14	54.2	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55376530|ref|YP_134382.1|	-	1.9e-14	53.5	1.0	1.1e-13	51.1	0.0	2.7	3	0	0	3	3	3	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.7	gi|55376530|ref|YP_134382.1|	-	0.00075	19.1	1.0	0.0091	15.6	0.4	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Myosin_N	PF02736.14	gi|55376530|ref|YP_134382.1|	-	0.45	10.2	5.9	5.9	6.6	0.0	2.8	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
PDDEXK_1	PF12705.2	gi|55376532|ref|YP_134384.1|	-	0.03	13.7	0.1	0.036	13.4	0.1	1.2	1	0	0	1	1	1	0	PD-(D/E)XK	nuclease	superfamily
KfrA_N	PF11740.3	gi|55376532|ref|YP_134384.1|	-	0.075	13.4	0.5	0.11	12.8	0.3	1.3	1	0	0	1	1	1	0	Plasmid	replication	region	DNA-binding	N-term
Cytochrom_C_2	PF01322.15	gi|55376532|ref|YP_134384.1|	-	0.093	13.2	0.2	0.14	12.6	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	C'
DUF3797	PF12677.2	gi|55376533|ref|YP_134385.1|	-	0.022	14.3	1.4	0.54	9.9	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Zn-ribbon_8	PF09723.5	gi|55376533|ref|YP_134385.1|	-	0.065	13.1	0.8	9.2	6.3	0.0	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|55376533|ref|YP_134385.1|	-	0.16	11.4	0.4	4.2	6.9	0.0	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF2387	PF09526.5	gi|55376533|ref|YP_134385.1|	-	0.2	11.6	0.7	0.33	10.8	0.5	1.3	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
TF_Zn_Ribbon	PF08271.7	gi|55376533|ref|YP_134385.1|	-	0.2	10.9	1.6	7.3	5.9	0.1	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|55376533|ref|YP_134385.1|	-	0.22	11.2	0.6	0.64	9.7	0.4	1.7	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|55376533|ref|YP_134385.1|	-	1.1	9.1	3.8	15	5.4	2.6	2.2	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
RNA_POL_M_15KD	PF02150.11	gi|55376533|ref|YP_134385.1|	-	1.5	8.5	4.8	11	5.8	3.3	2.0	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
GFA	PF04828.9	gi|55376534|ref|YP_134386.1|	-	0.0069	16.3	1.1	0.28	11.1	0.1	2.2	1	1	1	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
Nudix_N_2	PF14803.1	gi|55376534|ref|YP_134386.1|	-	0.015	14.9	0.8	1.3	8.7	0.1	2.5	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.1	gi|55376534|ref|YP_134386.1|	-	0.018	14.5	1.3	3.5	7.2	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2318	PF10080.4	gi|55376534|ref|YP_134386.1|	-	0.021	14.6	0.1	0.026	14.2	0.0	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DZR	PF12773.2	gi|55376534|ref|YP_134386.1|	-	0.022	14.5	1.0	0.057	13.2	0.7	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.1	gi|55376534|ref|YP_134386.1|	-	0.059	13.6	2.4	0.16	12.3	1.7	1.7	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|55376534|ref|YP_134386.1|	-	0.062	12.5	4.4	1.8	7.8	3.8	2.2	1	1	2	3	3	3	0	zinc-ribbon	domain
C1_1	PF00130.17	gi|55376534|ref|YP_134386.1|	-	0.11	12.2	1.0	0.17	11.6	0.7	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
UPF0547	PF10571.4	gi|55376534|ref|YP_134386.1|	-	0.14	11.8	1.5	0.77	9.5	0.9	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1272	PF06906.6	gi|55376534|ref|YP_134386.1|	-	0.66	9.8	3.3	4.2	7.3	0.2	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1272)
DNA_ligase_ZBD	PF03119.11	gi|55376534|ref|YP_134386.1|	-	6.1	6.6	8.0	1	9.1	0.3	2.8	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HTH_20	PF12840.2	gi|55376536|ref|YP_134388.1|	-	1.9e-11	43.6	1.2	1.6e-05	24.6	0.1	2.4	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376536|ref|YP_134388.1|	-	2.8e-11	42.9	2.1	2.9e-05	23.6	0.2	2.7	2	0	0	2	2	2	2	MarR	family
HTH_27	PF13463.1	gi|55376536|ref|YP_134388.1|	-	3.6e-09	36.8	0.2	0.00012	22.3	0.0	2.6	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|55376536|ref|YP_134388.1|	-	1.5e-07	30.9	0.0	0.00072	19.2	0.0	3.0	3	1	0	3	3	3	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|55376536|ref|YP_134388.1|	-	1.1e-06	28.2	0.0	0.0012	18.5	0.0	2.5	2	0	0	2	2	2	2	Crp-like	helix-turn-helix	domain
GntR	PF00392.16	gi|55376536|ref|YP_134388.1|	-	3e-06	26.5	0.3	0.41	10.1	0.0	3.5	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
Sigma70_r3	PF04539.11	gi|55376536|ref|YP_134388.1|	-	1.2e-05	25.1	0.0	0.018	14.9	0.0	2.8	2	0	0	2	2	2	2	Sigma-70	region	3
HTH_IclR	PF09339.5	gi|55376536|ref|YP_134388.1|	-	1.7e-05	24.3	6.6	0.0012	18.3	0.8	2.9	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|55376536|ref|YP_134388.1|	-	2.3e-05	24.3	0.0	0.0032	17.5	0.0	2.6	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_24	PF13412.1	gi|55376536|ref|YP_134388.1|	-	4.6e-05	22.7	0.0	0.14	11.5	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.1	gi|55376536|ref|YP_134388.1|	-	0.00035	20.7	0.2	0.0097	16.0	0.1	2.4	1	1	1	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|55376536|ref|YP_134388.1|	-	0.0011	18.9	0.0	0.11	12.5	0.0	3.0	3	0	0	3	3	3	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|55376536|ref|YP_134388.1|	-	0.0018	17.9	0.0	0.33	10.6	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_10	PF04967.7	gi|55376536|ref|YP_134388.1|	-	0.0042	16.6	0.0	0.39	10.3	0.0	2.6	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_23	PF13384.1	gi|55376536|ref|YP_134388.1|	-	0.005	16.4	0.2	2.1	8.1	0.0	2.8	3	0	0	3	3	2	1	Homeodomain-like	domain
HTH_5	PF01022.15	gi|55376536|ref|YP_134388.1|	-	0.021	14.5	0.0	0.2	11.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.1	gi|55376536|ref|YP_134388.1|	-	0.024	14.7	0.0	10	6.3	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF1441	PF07278.6	gi|55376536|ref|YP_134388.1|	-	0.027	14.1	0.0	0.051	13.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1441)
HTH_11	PF08279.7	gi|55376536|ref|YP_134388.1|	-	0.028	14.0	0.0	0.7	9.5	0.0	2.3	2	0	0	2	2	2	0	HTH	domain
DUF2250	PF10007.4	gi|55376536|ref|YP_134388.1|	-	0.03	14.2	0.0	1.3	8.9	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_AsnC-type	PF13404.1	gi|55376536|ref|YP_134388.1|	-	0.04	13.4	0.1	5.8	6.5	0.0	2.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|55376536|ref|YP_134388.1|	-	0.078	12.4	0.0	0.46	9.9	0.0	2.1	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_13	PF11972.3	gi|55376536|ref|YP_134388.1|	-	0.13	12.1	0.0	5.5	6.9	0.0	2.4	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_CodY	PF08222.6	gi|55376536|ref|YP_134388.1|	-	0.14	11.4	0.0	0.54	9.6	0.0	1.8	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
Mrr_cat	PF04471.7	gi|55376537|ref|YP_134389.1|	-	8.2e-28	96.5	0.0	1.5e-27	95.6	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
zf-ribbon_3	PF13248.1	gi|55376537|ref|YP_134389.1|	-	0.0049	16.0	2.4	0.0049	16.0	1.6	1.8	2	0	0	2	2	2	1	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|55376537|ref|YP_134389.1|	-	0.086	12.6	1.6	0.22	11.3	1.1	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DZR	PF12773.2	gi|55376537|ref|YP_134389.1|	-	0.33	10.7	7.9	0.037	13.8	1.7	1.9	1	1	1	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|55376537|ref|YP_134389.1|	-	1.4	8.4	6.6	0.47	10.0	2.2	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_5	PF14634.1	gi|55376537|ref|YP_134389.1|	-	1.5	8.5	7.8	7.5	6.3	4.8	2.2	2	0	0	2	2	2	0	zinc-RING	finger	domain
DUF2059	PF09832.4	gi|55376544|ref|YP_134396.1|	-	0.024	14.6	0.5	6.7	6.8	0.0	3.2	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2059)
DUF993	PF06187.6	gi|55376545|ref|YP_134397.1|	-	0.0028	16.2	0.0	0.0045	15.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF993)
AhpC-TSA	PF00578.16	gi|55376546|ref|YP_134398.1|	-	5.4e-28	97.1	0.0	9.1e-28	96.4	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|55376546|ref|YP_134398.1|	-	4e-15	55.6	0.0	4.8e-15	55.3	0.0	1.1	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.7	gi|55376546|ref|YP_134398.1|	-	0.021	14.2	0.0	0.024	14.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
HxlR	PF01638.12	gi|55376547|ref|YP_134399.1|	-	7.9e-18	63.8	0.0	8.8e-18	63.7	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
MarR	PF01047.17	gi|55376547|ref|YP_134399.1|	-	4.2e-05	23.1	0.1	8.2e-05	22.2	0.0	1.5	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.2	gi|55376547|ref|YP_134399.1|	-	0.00022	20.8	0.0	0.00036	20.1	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|55376547|ref|YP_134399.1|	-	0.00049	20.0	0.0	0.00068	19.6	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|55376547|ref|YP_134399.1|	-	0.00059	19.5	0.0	0.00083	19.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.2	gi|55376547|ref|YP_134399.1|	-	0.00093	18.9	0.0	0.0013	18.4	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3385	PF11865.3	gi|55376547|ref|YP_134399.1|	-	0.023	14.6	0.0	0.027	14.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3385)
Peptidase_M2	PF01401.13	gi|55376547|ref|YP_134399.1|	-	0.024	12.8	0.0	0.026	12.7	0.0	1.0	1	0	0	1	1	1	0	Angiotensin-converting	enzyme
FUR	PF01475.14	gi|55376547|ref|YP_134399.1|	-	0.028	14.3	0.0	0.031	14.1	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
KfrA_N	PF11740.3	gi|55376547|ref|YP_134399.1|	-	0.076	13.4	0.0	0.098	13.1	0.0	1.1	1	0	0	1	1	1	0	Plasmid	replication	region	DNA-binding	N-term
HTH_27	PF13463.1	gi|55376547|ref|YP_134399.1|	-	0.09	13.1	0.0	0.12	12.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|55376547|ref|YP_134399.1|	-	0.096	12.2	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_DeoR	PF08220.7	gi|55376547|ref|YP_134399.1|	-	0.14	11.7	0.0	0.21	11.1	0.0	1.2	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Pyr_redox_2	PF07992.9	gi|55376548|ref|YP_134400.1|	-	2.1e-34	119.1	1.2	1.1e-33	116.7	0.9	2.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|55376548|ref|YP_134400.1|	-	1.6e-30	105.3	0.7	2.8e-30	104.5	0.5	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|55376548|ref|YP_134400.1|	-	4.7e-16	58.9	1.2	1.9e-15	57.0	0.3	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|55376548|ref|YP_134400.1|	-	0.00039	19.3	0.9	0.0028	16.5	0.6	2.0	1	1	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.17	gi|55376548|ref|YP_134400.1|	-	0.002	17.0	3.5	0.0094	14.8	1.5	2.5	2	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|55376548|ref|YP_134400.1|	-	0.0023	17.0	1.8	0.0023	17.0	1.2	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|55376548|ref|YP_134400.1|	-	0.028	13.3	4.1	1.8	7.3	0.1	2.6	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|55376548|ref|YP_134400.1|	-	0.043	13.4	1.7	0.05	13.2	0.1	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NikR_C	PF08753.6	gi|55376549|ref|YP_134401.1|	-	2.5e-10	40.0	1.2	4.1e-10	39.4	0.8	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|55376549|ref|YP_134401.1|	-	0.00019	21.1	0.2	0.00033	20.4	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF2191	PF09957.4	gi|55376549|ref|YP_134401.1|	-	0.062	13.1	0.0	0.15	11.8	0.0	1.7	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
DUF1024	PF06260.7	gi|55376549|ref|YP_134401.1|	-	0.078	13.1	0.6	0.22	11.6	0.2	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1024)
Clr5	PF14420.1	gi|55376549|ref|YP_134401.1|	-	0.15	11.9	0.3	0.78	9.6	0.1	2.0	2	0	0	2	2	2	0	Clr5	domain
NicO	PF03824.11	gi|55376550|ref|YP_134402.1|	-	7.2e-08	32.0	3.4	7.2e-08	32.0	2.4	2.5	3	1	0	3	3	3	1	High-affinity	nickel-transport	protein
HTH_20	PF12840.2	gi|55376551|ref|YP_134403.1|	-	4.3e-11	42.4	0.5	4.3e-11	42.4	0.3	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376551|ref|YP_134403.1|	-	5e-07	29.2	0.2	2.4e-06	27.1	0.1	2.1	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_12	PF08461.5	gi|55376551|ref|YP_134403.1|	-	0.00025	20.7	1.2	0.00055	19.6	0.3	2.0	3	0	0	3	3	3	1	Ribonuclease	R	winged-helix	domain
Nop16	PF09420.5	gi|55376551|ref|YP_134403.1|	-	0.00056	20.0	0.7	0.0011	19.1	0.5	1.6	1	1	0	1	1	1	1	Ribosome	biogenesis	protein	Nop16
FUR	PF01475.14	gi|55376551|ref|YP_134403.1|	-	0.00067	19.5	0.2	0.0013	18.6	0.1	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
TFIIE_alpha	PF02002.12	gi|55376551|ref|YP_134403.1|	-	0.0016	17.9	0.9	0.0044	16.4	0.2	2.0	2	0	0	2	2	2	1	TFIIE	alpha	subunit
TrmB	PF01978.14	gi|55376551|ref|YP_134403.1|	-	0.0017	18.0	0.3	0.0084	15.7	0.1	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.9	gi|55376551|ref|YP_134403.1|	-	0.0019	17.9	0.5	0.0085	15.8	0.1	2.1	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
Penicillinase_R	PF03965.11	gi|55376551|ref|YP_134403.1|	-	0.007	16.4	0.1	0.019	15.0	0.1	1.8	2	0	0	2	2	2	1	Penicillinase	repressor
PqqD	PF05402.7	gi|55376551|ref|YP_134403.1|	-	0.016	15.1	2.8	0.076	13.0	0.1	2.6	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
ArsR	PF09824.4	gi|55376551|ref|YP_134403.1|	-	0.041	13.2	0.0	0.073	12.3	0.0	1.3	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
ATP-cone	PF03477.11	gi|55376551|ref|YP_134403.1|	-	0.052	13.9	0.9	0.28	11.6	0.2	2.4	2	0	0	2	2	2	0	ATP	cone	domain
HU-DNA_bdg	PF14848.1	gi|55376551|ref|YP_134403.1|	-	0.14	11.8	0.7	0.27	10.9	0.5	1.4	1	0	0	1	1	1	0	DNA-binding	domain
E1-E2_ATPase	PF00122.15	gi|55376552|ref|YP_134404.1|	-	5.3e-49	166.3	0.3	1.2e-48	165.1	0.0	1.8	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|55376552|ref|YP_134404.1|	-	2.8e-46	158.6	6.6	2.8e-46	158.6	4.6	1.7	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|55376552|ref|YP_134404.1|	-	6.4e-15	55.8	0.4	1.3e-14	54.7	0.3	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55376552|ref|YP_134404.1|	-	2.3e-11	43.6	0.1	6.4e-11	42.2	0.0	1.8	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.7	gi|55376552|ref|YP_134404.1|	-	2.2e-06	27.4	0.7	0.00055	19.5	0.4	2.5	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|55376553|ref|YP_134405.1|	-	1.7e-11	44.0	0.2	2.7e-11	43.4	0.1	1.3	1	0	0	1	1	1	1	Heavy-metal-associated	domain
CheY-binding	PF09078.6	gi|55376553|ref|YP_134405.1|	-	0.015	15.2	0.5	0.025	14.5	0.3	1.4	1	0	0	1	1	1	0	CheY	binding
TusA	PF01206.12	gi|55376553|ref|YP_134405.1|	-	0.028	14.0	0.1	0.054	13.1	0.0	1.5	2	0	0	2	2	2	0	Sulfurtransferase	TusA
ACP53EA	PF06313.6	gi|55376554|ref|YP_134406.1|	-	0.049	13.5	0.0	0.051	13.5	0.0	1.2	1	0	0	1	1	1	0	Drosophila	ACP53EA	protein
DUF955	PF06114.8	gi|55376556|ref|YP_134408.1|	-	0.0014	18.3	0.0	0.0024	17.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
DUF2268	PF10026.4	gi|55376556|ref|YP_134408.1|	-	0.0075	15.6	0.0	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	Predicted	Zn-dependent	protease	(DUF2268)
Peptidase_MA_2	PF13485.1	gi|55376556|ref|YP_134408.1|	-	0.014	15.4	0.0	0.029	14.4	0.0	1.6	1	0	0	1	1	1	0	Peptidase	MA	superfamily
SprT-like	PF10263.4	gi|55376556|ref|YP_134408.1|	-	0.014	15.0	2.5	0.031	13.9	0.0	2.2	2	1	0	2	2	2	0	SprT-like	family
SWIM	PF04434.12	gi|55376557|ref|YP_134409.1|	-	0.0039	16.6	0.1	0.0094	15.4	0.0	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
CBS	PF00571.23	gi|55376558|ref|YP_134410.1|	-	9.6e-17	60.5	0.4	7e-11	41.7	0.0	2.4	2	0	0	2	2	2	2	CBS	domain
ARL6IP6	PF15062.1	gi|55376560|ref|YP_134412.1|	-	0.031	14.1	0.0	0.088	12.7	0.0	1.8	1	0	0	1	1	1	0	Haemopoietic	lineage	transmembrane	helix
SlyX	PF04102.7	gi|55376561|ref|YP_134413.1|	-	0.0054	17.0	0.1	0.01	16.2	0.1	1.3	1	0	0	1	1	1	1	SlyX
HTH_20	PF12840.2	gi|55376562|ref|YP_134414.1|	-	9.7e-05	22.1	0.0	0.00017	21.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376562|ref|YP_134414.1|	-	0.00013	21.5	0.0	0.00032	20.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF2513	PF10711.4	gi|55376562|ref|YP_134414.1|	-	0.013	15.5	0.0	0.016	15.2	0.0	1.4	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
RP-C	PF03428.8	gi|55376562|ref|YP_134414.1|	-	0.076	12.4	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
TrmB	PF01978.14	gi|55376562|ref|YP_134414.1|	-	0.082	12.6	0.0	0.22	11.2	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|55376562|ref|YP_134414.1|	-	0.088	12.2	0.1	0.27	10.7	0.0	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
PadR	PF03551.9	gi|55376562|ref|YP_134414.1|	-	0.1	12.3	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_24	PF13412.1	gi|55376562|ref|YP_134414.1|	-	0.12	11.7	0.0	0.39	10.1	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Cdc6_C	PF09079.6	gi|55376564|ref|YP_134416.1|	-	7.5e-16	57.6	0.1	3.3e-15	55.5	0.0	2.1	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|55376564|ref|YP_134416.1|	-	1.6e-11	44.5	0.0	1.5e-10	41.3	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55376564|ref|YP_134416.1|	-	8.4e-11	42.1	0.0	2.9e-10	40.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|55376564|ref|YP_134416.1|	-	8.6e-06	25.9	0.0	3.4e-05	24.0	0.0	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|55376564|ref|YP_134416.1|	-	0.0024	16.8	0.0	0.0038	16.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.9	gi|55376564|ref|YP_134416.1|	-	0.0035	17.0	0.0	0.3	10.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|55376564|ref|YP_134416.1|	-	0.0054	16.2	0.0	0.01	15.2	0.0	1.5	1	0	0	1	1	1	1	Sigma-54	interaction	domain
Terminase_2	PF03592.11	gi|55376564|ref|YP_134416.1|	-	0.019	15.2	0.1	0.07	13.4	0.0	2.0	2	1	0	2	2	2	0	Terminase	small	subunit
ResIII	PF04851.10	gi|55376564|ref|YP_134416.1|	-	0.023	14.5	0.0	0.094	12.5	0.0	1.9	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
RNA_helicase	PF00910.17	gi|55376564|ref|YP_134416.1|	-	0.054	13.6	0.0	0.24	11.5	0.0	2.2	2	0	0	2	2	1	0	RNA	helicase
AAA_17	PF13207.1	gi|55376564|ref|YP_134416.1|	-	0.06	14.1	1.2	0.17	12.7	0.0	2.5	2	1	0	2	2	1	0	AAA	domain
RuvB_N	PF05496.7	gi|55376564|ref|YP_134416.1|	-	0.087	11.8	0.1	0.67	8.9	0.0	2.3	3	0	0	3	3	3	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
NACHT	PF05729.7	gi|55376564|ref|YP_134416.1|	-	0.13	11.8	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Torsin	PF06309.6	gi|55376564|ref|YP_134416.1|	-	0.17	11.7	0.0	0.38	10.6	0.0	1.5	1	0	0	1	1	1	0	Torsin
DNA_pol_B	PF00136.16	gi|55376565|ref|YP_134417.1|	-	4.1e-42	144.5	0.0	7.5e-42	143.6	0.0	1.3	1	1	0	1	1	1	1	DNA	polymerase	family	B
Glycos_transf_N	PF04413.11	gi|55376565|ref|YP_134417.1|	-	0.11	11.6	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	3-Deoxy-D-manno-octulosonic-acid	transferase	(kdotransferase)
HXXSHH	PF07586.6	gi|55376567|ref|YP_134419.1|	-	0.0064	15.4	2.0	0.74	8.6	0.3	2.0	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1552)
CorA	PF01544.13	gi|55376567|ref|YP_134419.1|	-	0.023	13.7	2.8	0.025	13.5	2.0	1.0	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Laminin_I	PF06008.9	gi|55376567|ref|YP_134419.1|	-	0.024	13.9	3.8	0.028	13.7	2.6	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
Sugarporin_N	PF11471.3	gi|55376567|ref|YP_134419.1|	-	0.044	13.4	0.8	0.085	12.5	0.6	1.5	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
Complex1_LYR_2	PF13233.1	gi|55376567|ref|YP_134419.1|	-	0.095	13.1	0.6	0.13	12.7	0.4	1.1	1	0	0	1	1	1	0	Complex1_LYR-like
Herpes_UL14	PF03580.9	gi|55376567|ref|YP_134419.1|	-	0.11	12.2	5.4	0.96	9.2	1.3	2.3	2	1	0	2	2	2	0	Herpesvirus	UL14-like	protein
MutL_C	PF08676.6	gi|55376567|ref|YP_134419.1|	-	0.13	11.9	0.3	0.15	11.6	0.2	1.2	1	0	0	1	1	1	0	MutL	C	terminal	dimerisation	domain
DUF106	PF01956.11	gi|55376570|ref|YP_134422.1|	-	0.0018	17.8	1.0	0.56	9.7	0.0	2.4	2	0	0	2	2	2	2	Integral	membrane	protein	DUF106
VIT1	PF01988.14	gi|55376570|ref|YP_134422.1|	-	0.0021	17.6	0.9	0.73	9.2	0.3	2.3	2	0	0	2	2	2	2	VIT	family
DivIC	PF04977.10	gi|55376570|ref|YP_134422.1|	-	0.0069	15.8	19.9	0.011	15.2	0.6	3.8	4	0	0	4	4	4	2	Septum	formation	initiator
TMF_TATA_bd	PF12325.3	gi|55376570|ref|YP_134422.1|	-	0.0082	15.8	3.4	0.0082	15.8	2.3	3.3	3	0	0	3	3	3	1	TATA	element	modulatory	factor	1	TATA	binding
DUF2207	PF09972.4	gi|55376570|ref|YP_134422.1|	-	0.046	12.2	1.8	0.24	9.9	0.0	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
Osmo_CC	PF08946.5	gi|55376570|ref|YP_134422.1|	-	0.068	13.2	0.5	0.068	13.2	0.3	4.9	4	2	1	5	5	5	0	Osmosensory	transporter	coiled	coil
DUF4140	PF13600.1	gi|55376570|ref|YP_134422.1|	-	0.84	10.1	19.6	0.052	14.0	1.8	3.8	4	0	0	4	4	4	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF342	PF03961.8	gi|55376570|ref|YP_134422.1|	-	2.4	6.4	15.5	1.2	7.4	0.9	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF342)
Atg14	PF10186.4	gi|55376570|ref|YP_134422.1|	-	5.2	5.9	17.9	0.41	9.5	2.5	2.3	2	0	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Laminin_II	PF06009.7	gi|55376571|ref|YP_134423.1|	-	0.17	11.6	4.2	0.11	12.3	0.5	2.1	1	1	0	2	2	2	0	Laminin	Domain	II
Peptidase_S49_N	PF08496.5	gi|55376571|ref|YP_134423.1|	-	1.1	8.9	6.7	0.41	10.4	2.7	1.6	2	0	0	2	2	2	0	Peptidase	family	S49	N-terminal
Atrophin-1	PF03154.10	gi|55376571|ref|YP_134423.1|	-	8.6	4.3	8.3	11	3.9	5.8	1.1	1	0	0	1	1	1	0	Atrophin-1	family
DUF159	PF02586.9	gi|55376572|ref|YP_134424.1|	-	2.4e-59	200.3	0.0	2.7e-59	200.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR,	COG2135
AAA_16	PF13191.1	gi|55376573|ref|YP_134425.1|	-	1e-09	38.6	0.8	3.3e-08	33.7	0.1	2.7	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55376573|ref|YP_134425.1|	-	1.3e-09	38.2	0.0	8.3e-09	35.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|55376573|ref|YP_134425.1|	-	7.3e-06	26.3	0.4	3.5e-05	24.1	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
Penicillinase_R	PF03965.11	gi|55376573|ref|YP_134425.1|	-	2e-05	24.6	0.0	4.9e-05	23.3	0.0	1.7	1	0	0	1	1	1	1	Penicillinase	repressor
RuvB_N	PF05496.7	gi|55376573|ref|YP_134425.1|	-	0.00013	21.0	0.0	0.00073	18.6	0.0	2.0	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|55376573|ref|YP_134425.1|	-	0.00016	21.3	0.0	0.00068	19.3	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|55376573|ref|YP_134425.1|	-	0.00016	22.4	3.0	0.0024	18.6	2.1	2.4	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|55376573|ref|YP_134425.1|	-	0.00023	20.1	0.0	0.00036	19.4	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
NTPase_1	PF03266.10	gi|55376573|ref|YP_134425.1|	-	0.00037	20.2	0.2	0.014	15.0	0.0	2.8	2	1	0	3	3	3	1	NTPase
AAA	PF00004.24	gi|55376573|ref|YP_134425.1|	-	0.00073	19.7	0.0	0.01	16.0	0.0	2.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.4	gi|55376573|ref|YP_134425.1|	-	0.00083	18.4	0.0	0.0012	17.9	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Bac_DnaA	PF00308.13	gi|55376573|ref|YP_134425.1|	-	0.002	17.8	0.0	0.016	14.8	0.0	2.1	2	1	0	2	2	2	1	Bacterial	dnaA	protein
AAA_14	PF13173.1	gi|55376573|ref|YP_134425.1|	-	0.0022	17.8	0.0	0.0052	16.6	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Cdc6_C	PF09079.6	gi|55376573|ref|YP_134425.1|	-	0.0034	17.0	0.2	0.017	14.8	0.1	2.2	1	1	1	2	2	2	1	CDC6,	C	terminal
Arch_ATPase	PF01637.13	gi|55376573|ref|YP_134425.1|	-	0.0053	16.4	0.0	0.059	13.0	0.0	2.6	1	1	0	1	1	1	1	Archaeal	ATPase
DUF2791	PF10923.3	gi|55376573|ref|YP_134425.1|	-	0.0081	14.8	0.0	0.013	14.1	0.0	1.3	1	0	0	1	1	1	1	P-loop	Domain	of	unknown	function	(DUF2791)
AAA_33	PF13671.1	gi|55376573|ref|YP_134425.1|	-	0.011	15.5	1.1	1.3	8.9	0.0	3.0	2	2	1	3	3	3	0	AAA	domain
PRK	PF00485.13	gi|55376573|ref|YP_134425.1|	-	0.015	14.9	0.0	0.046	13.2	0.0	1.8	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
NACHT	PF05729.7	gi|55376573|ref|YP_134425.1|	-	0.018	14.7	0.0	0.029	14.0	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
DUF4194	PF13835.1	gi|55376573|ref|YP_134425.1|	-	0.023	14.1	0.0	0.053	12.9	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4194)
DUF258	PF03193.11	gi|55376573|ref|YP_134425.1|	-	0.03	13.5	0.0	0.048	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
RNA_helicase	PF00910.17	gi|55376573|ref|YP_134425.1|	-	0.043	13.9	0.0	0.12	12.5	0.0	1.8	1	1	0	1	1	1	0	RNA	helicase
AAA_30	PF13604.1	gi|55376573|ref|YP_134425.1|	-	0.053	13.0	0.5	0.25	10.9	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|55376573|ref|YP_134425.1|	-	0.089	12.2	0.6	3.4	7.0	0.4	2.5	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|55376573|ref|YP_134425.1|	-	0.11	12.3	0.0	0.31	10.8	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
SNF2_N	PF00176.18	gi|55376574|ref|YP_134426.1|	-	1.3e-18	66.7	0.0	2.7e-18	65.8	0.0	1.4	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|55376574|ref|YP_134426.1|	-	1.2e-15	57.1	0.0	3.2e-15	55.7	0.0	1.8	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|55376574|ref|YP_134426.1|	-	2.5e-06	27.4	0.0	9.4e-06	25.5	0.0	2.0	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
PLDc_2	PF13091.1	gi|55376574|ref|YP_134426.1|	-	8.4e-05	22.3	0.0	0.0002	21.1	0.0	1.6	1	0	0	1	1	1	1	PLD-like	domain
Helicase_C_4	PF13871.1	gi|55376574|ref|YP_134426.1|	-	0.00091	18.7	1.1	0.0037	16.7	0.0	2.4	3	0	0	3	3	3	1	Helicase_C-like
DEAD	PF00270.24	gi|55376574|ref|YP_134426.1|	-	0.01	15.3	0.0	0.92	8.9	0.0	2.6	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
FlgN	PF05130.7	gi|55376574|ref|YP_134426.1|	-	0.037	14.2	6.8	0.023	14.9	0.7	3.2	3	1	0	3	3	3	0	FlgN	protein
CMD	PF02627.15	gi|55376574|ref|YP_134426.1|	-	0.076	12.8	0.1	0.18	11.6	0.1	1.6	1	0	0	1	1	1	0	Carboxymuconolactone	decarboxylase	family
DUF1664	PF07889.7	gi|55376574|ref|YP_134426.1|	-	0.077	12.8	0.7	0.84	9.4	0.1	2.8	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1664)
AAA_13	PF13166.1	gi|55376574|ref|YP_134426.1|	-	0.079	11.4	0.2	0.24	9.8	0.1	1.8	1	0	0	1	1	1	0	AAA	domain
Osmo_CC	PF08946.5	gi|55376574|ref|YP_134426.1|	-	0.13	12.2	3.0	25	4.9	0.1	4.3	4	0	0	4	4	3	0	Osmosensory	transporter	coiled	coil
Mod_r	PF07200.8	gi|55376574|ref|YP_134426.1|	-	0.44	10.4	5.2	0.15	12.0	0.2	2.6	3	0	0	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
CENP-Q	PF13094.1	gi|55376574|ref|YP_134426.1|	-	2.3	8.2	8.8	0.18	11.8	2.2	2.0	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DivIC	PF04977.10	gi|55376574|ref|YP_134426.1|	-	3.7	7.0	6.5	1.1	8.8	0.1	3.2	3	0	0	3	3	3	0	Septum	formation	initiator
FUSC	PF04632.7	gi|55376574|ref|YP_134426.1|	-	7.6	4.8	5.0	18	3.5	3.5	1.6	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF883	PF05957.8	gi|55376574|ref|YP_134426.1|	-	9.3	6.7	13.5	1	9.8	0.3	4.1	4	1	0	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF1156	PF06634.7	gi|55376575|ref|YP_134427.1|	-	7.7e-15	54.4	0.1	2.6e-14	52.7	0.1	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1156)
Methyltransf_26	PF13659.1	gi|55376575|ref|YP_134427.1|	-	1.5e-06	28.2	0.0	2.2e-05	24.4	0.0	2.5	1	1	0	1	1	1	1	Methyltransferase	domain
N6_N4_Mtase	PF01555.13	gi|55376575|ref|YP_134427.1|	-	0.00076	19.0	0.0	0.0013	18.2	0.0	1.4	1	0	0	1	1	1	1	DNA	methylase
UPF0020	PF01170.13	gi|55376575|ref|YP_134427.1|	-	0.059	12.9	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Lar_restr_allev	PF14354.1	gi|55376575|ref|YP_134427.1|	-	0.11	12.7	1.5	4.7	7.6	0.0	3.3	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
Phage_P2_GpE	PF06528.7	gi|55376576|ref|YP_134428.1|	-	0.081	12.3	0.0	0.23	10.9	0.0	1.8	1	0	0	1	1	1	0	Phage	P2	GpE
DUF499	PF04465.7	gi|55376577|ref|YP_134429.1|	-	1.5e-31	108.9	0.0	1.4e-26	92.5	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF499)
TraS	PF10624.4	gi|55376578|ref|YP_134430.1|	-	0.14	11.7	0.1	0.15	11.6	0.0	1.0	1	0	0	1	1	1	0	Plasmid	conjugative	transfer	entry	exclusion	protein	TraS