# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Piwi PF02171.17 gi|55376414|ref|YP_134266.1| - 0.0019 17.5 0.0 0.0045 16.3 0.0 1.6 2 0 0 2 2 2 1 Piwi domain PIN PF01850.21 gi|55376417|ref|YP_134269.1| - 0.00019 21.9 0.1 0.00079 19.9 0.0 1.9 2 0 0 2 2 2 1 PIN domain TRAM PF01938.20 gi|55376419|ref|YP_134271.1| - 4.1e-15 55.5 1.9 8e-15 54.6 1.9 1.5 1 0 0 1 1 1 1 TRAM domain NTP_transf_5 PF14907.6 gi|55376421|ref|YP_134273.1| - 4.2e-08 33.1 0.1 5.7e-08 32.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase AbiEii PF08843.11 gi|55376421|ref|YP_134273.1| - 0.00036 20.6 0.3 0.0064 16.5 0.0 2.1 2 0 0 2 2 2 1 Nucleotidyl transferase AbiEii toxin, Type IV TA system Propep_M14 PF02244.16 gi|55376421|ref|YP_134273.1| - 0.011 16.2 0.0 0.031 14.7 0.0 1.8 1 0 0 1 1 1 0 Carboxypeptidase activation peptide GrpB PF04229.14 gi|55376421|ref|YP_134273.1| - 0.039 14.2 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 GrpB protein DUF99 PF01949.16 gi|55376421|ref|YP_134273.1| - 0.14 11.6 0.1 0.52 9.7 0.0 1.9 3 0 0 3 3 3 0 Protein of unknown function DUF99 HTH_23 PF13384.6 gi|55376422|ref|YP_134274.1| - 7.7e-06 25.6 0.0 3e-05 23.7 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|55376422|ref|YP_134274.1| - 8.4e-05 22.4 0.2 0.00022 21.0 0.1 1.6 1 1 1 2 2 2 1 MarR family HTH_28 PF13518.6 gi|55376422|ref|YP_134274.1| - 9e-05 22.5 1.9 0.00014 21.9 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|55376422|ref|YP_134274.1| - 0.00042 20.2 0.4 0.0017 18.2 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family Fe_dep_repress PF01325.19 gi|55376422|ref|YP_134274.1| - 0.0014 18.8 0.0 0.01 16.1 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|55376422|ref|YP_134274.1| - 0.0028 17.3 0.0 0.012 15.2 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|55376422|ref|YP_134274.1| - 0.0033 17.7 0.0 0.044 14.1 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.19 gi|55376422|ref|YP_134274.1| - 0.0062 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|55376422|ref|YP_134274.1| - 0.007 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.11 gi|55376422|ref|YP_134274.1| - 0.019 15.6 0.0 0.034 14.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Crp_2 PF13545.6 gi|55376422|ref|YP_134274.1| - 0.024 14.6 0.0 0.081 12.9 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|55376422|ref|YP_134274.1| - 0.026 14.3 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|55376422|ref|YP_134274.1| - 0.055 12.9 0.5 0.19 11.2 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF2250 PF10007.9 gi|55376422|ref|YP_134274.1| - 0.067 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.10 gi|55376422|ref|YP_134274.1| - 0.11 12.4 0.2 0.25 11.2 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain LPD11 PF18824.1 gi|55376422|ref|YP_134274.1| - 0.35 11.0 2.0 12 6.1 0.4 2.3 1 1 1 2 2 2 0 Large polyvalent protein-associated domain 11 AAA_31 PF13614.6 gi|55376423|ref|YP_134275.1| - 9.9e-37 126.5 0.3 1.7e-36 125.8 0.2 1.4 1 1 1 2 2 2 1 AAA domain CbiA PF01656.23 gi|55376423|ref|YP_134275.1| - 1.4e-15 57.5 0.0 2.6e-15 56.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|55376423|ref|YP_134275.1| - 4.8e-10 39.2 3.6 1.7e-05 24.3 0.6 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|55376423|ref|YP_134275.1| - 6.6e-08 32.3 0.0 1.3e-07 31.3 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|55376423|ref|YP_134275.1| - 7.8e-08 32.1 0.2 1.7e-07 31.0 0.2 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 gi|55376423|ref|YP_134275.1| - 2.2e-05 23.8 0.8 0.001 18.4 0.1 2.3 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 gi|55376423|ref|YP_134275.1| - 0.0002 20.7 3.0 0.0039 16.4 3.0 2.4 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|55376423|ref|YP_134275.1| - 0.011 15.2 0.1 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|55376423|ref|YP_134275.1| - 0.38 10.5 1.7 1.5 8.5 1.4 2.1 1 1 1 2 2 2 0 AAA domain Mucin PF01456.17 gi|55376424|ref|YP_134276.1| - 0.016 15.2 5.5 0.02 14.9 5.5 1.1 1 0 0 1 1 1 0 Mucin-like glycoprotein SSP160 PF06933.11 gi|55376424|ref|YP_134276.1| - 0.49 8.5 6.7 0.6 8.2 6.7 1.0 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Phage_int_SAM_5 PF13102.6 gi|55376425|ref|YP_134277.1| - 2.3e-06 27.9 0.0 5.9e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Phage integrase SAM-like domain Phage_integrase PF00589.22 gi|55376425|ref|YP_134277.1| - 0.0031 17.3 0.0 0.034 13.9 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55376425|ref|YP_134277.1| - 0.0044 17.3 0.0 0.13 12.6 0.0 3.1 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain RHH_6 PF16762.5 gi|55376425|ref|YP_134277.1| - 0.082 13.5 0.1 2 9.1 0.0 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix domain Phage_int_SAM_4 PF13495.6 gi|55376425|ref|YP_134277.1| - 0.1 13.1 0.0 0.26 11.8 0.0 1.7 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain FmdE PF02663.14 gi|55376426|ref|YP_134278.1| - 9.2e-05 22.5 0.0 0.00038 20.5 0.0 1.9 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon E1-E2_ATPase PF00122.20 gi|55376427|ref|YP_134279.1| - 8.6e-46 155.7 1.3 8.6e-46 155.7 1.3 2.4 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55376427|ref|YP_134279.1| - 1.6e-37 129.8 10.3 1.6e-37 129.8 10.3 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55376427|ref|YP_134279.1| - 0.0011 18.8 2.1 0.036 13.8 1.4 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55376427|ref|YP_134279.1| - 0.0019 18.6 0.4 0.014 15.8 0.4 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|55376427|ref|YP_134279.1| - 0.06 13.5 0.3 0.77 9.9 0.0 3.0 4 0 0 4 4 4 0 Haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55376428|ref|YP_134280.1| - 8.9e-14 51.7 0.0 9.7e-14 51.6 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF276 PF03434.13 gi|55376428|ref|YP_134280.1| - 0.016 14.4 0.0 0.016 14.4 0.0 1.0 1 0 0 1 1 1 0 DUF276 PMSR PF01625.21 gi|55376428|ref|YP_134280.1| - 0.023 14.9 0.1 0.026 14.7 0.1 1.1 1 0 0 1 1 1 0 Peptide methionine sulfoxide reductase Peptidase_S8_N PF16361.5 gi|55376428|ref|YP_134280.1| - 0.073 13.6 0.0 0.077 13.5 0.0 1.1 1 0 0 1 1 1 0 N-terminal of Subtilase family HTH_20 PF12840.7 gi|55376429|ref|YP_134281.1| - 4.2e-16 58.7 0.7 1e-15 57.6 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Type2_restr_D3 PF16902.5 gi|55376429|ref|YP_134281.1| - 0.00017 21.4 0.1 0.00042 20.2 0.1 1.6 1 0 0 1 1 1 1 Type-2 restriction enzyme D3 domain TFIIE_alpha PF02002.17 gi|55376429|ref|YP_134281.1| - 0.00063 19.6 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|55376429|ref|YP_134281.1| - 0.0012 18.7 0.2 0.011 15.6 0.2 2.3 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|55376429|ref|YP_134281.1| - 0.0015 18.4 0.1 0.0028 17.6 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PadR PF03551.14 gi|55376429|ref|YP_134281.1| - 0.0061 16.5 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Cdc6_C PF09079.11 gi|55376429|ref|YP_134281.1| - 0.0077 16.2 0.1 0.02 14.8 0.1 1.7 1 1 0 1 1 1 1 CDC6, C terminal winged helix domain TrmB PF01978.19 gi|55376429|ref|YP_134281.1| - 0.0099 15.7 0.1 0.043 13.7 0.0 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.19 gi|55376429|ref|YP_134281.1| - 0.043 13.9 0.0 0.087 13.0 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Amidohydro_1 PF01979.20 gi|55376430|ref|YP_134282.1| - 9.5e-51 173.1 0.0 1.1e-50 172.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|55376430|ref|YP_134282.1| - 8e-19 68.4 1.9 9e-13 48.5 0.3 2.2 2 0 0 2 2 2 2 Amidohydrolase family ArsP_1 PF03773.13 gi|55376431|ref|YP_134283.1| - 3.9e-58 196.9 12.9 5.4e-58 196.5 12.9 1.2 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|55376431|ref|YP_134283.1| - 5.8e-18 64.7 8.3 1.1e-12 47.8 2.7 2.3 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|55376431|ref|YP_134283.1| - 0.0013 18.6 5.4 0.35 10.9 0.5 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.16 gi|55376431|ref|YP_134283.1| - 0.038 13.9 1.9 0.059 13.2 0.3 2.0 2 0 0 2 2 2 0 HIT zinc finger Ribosomal_L24e PF01246.20 gi|55376431|ref|YP_134283.1| - 0.08 13.2 0.1 0.4 10.9 0.1 2.0 2 0 0 2 2 2 0 Ribosomal protein L24e Arc_trans_TRASH PF08394.10 gi|55376431|ref|YP_134283.1| - 0.19 12.1 0.2 0.19 12.1 0.2 1.8 2 0 0 2 2 2 0 Archaeal TRASH domain PAP2 PF01569.21 gi|55376431|ref|YP_134283.1| - 8.2 6.2 12.2 4.5 7.0 0.9 3.3 3 0 0 3 3 3 0 PAP2 superfamily MarR_2 PF12802.7 gi|55376432|ref|YP_134284.1| - 9.4e-08 31.8 0.1 1.8e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|55376432|ref|YP_134284.1| - 6e-06 26.1 0.0 1.5e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|55376432|ref|YP_134284.1| - 3.3e-05 23.7 0.1 5.9e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|55376432|ref|YP_134284.1| - 0.00054 19.5 0.0 0.00089 18.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DGF-1_5 PF11038.8 gi|55376432|ref|YP_134284.1| - 0.0049 16.2 0.1 0.0059 16.0 0.1 1.1 1 0 0 1 1 1 1 Dispersed gene family protein 1 of Trypanosoma cruzi region 5 Penicillinase_R PF03965.16 gi|55376432|ref|YP_134284.1| - 0.012 16.0 0.0 0.022 15.1 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_IclR PF09339.10 gi|55376432|ref|YP_134284.1| - 0.014 15.1 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4307 PF14155.6 gi|55376432|ref|YP_134284.1| - 0.052 13.4 0.7 5.6 6.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) HTH_27 PF13463.6 gi|55376432|ref|YP_134284.1| - 0.093 13.2 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_54 PF18607.1 gi|55376432|ref|YP_134284.1| - 0.17 12.0 0.0 0.38 10.9 0.0 1.5 2 0 0 2 2 2 0 ParA helix turn helix domain DUF3185 PF11381.8 gi|55376432|ref|YP_134284.1| - 0.27 11.3 3.5 0.77 9.8 3.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3185) SHOCT PF09851.9 gi|55376434|ref|YP_134286.1| - 2e-09 36.9 1.1 3.3e-09 36.2 1.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55376434|ref|YP_134286.1| - 0.00043 20.3 1.4 0.00076 19.5 1.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|55376434|ref|YP_134286.1| - 0.14 12.1 0.7 0.22 11.6 0.7 1.2 1 0 0 1 1 1 0 Gas vesicle protein G DUF302 PF03625.14 gi|55376435|ref|YP_134287.1| - 1.4e-25 88.9 0.0 1.9e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF302 SHOCT PF09851.9 gi|55376436|ref|YP_134288.1| - 2e-08 33.7 2.4 2.9e-08 33.2 2.4 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55376436|ref|YP_134288.1| - 1.7e-05 24.8 0.5 2.4e-05 24.3 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF4381 PF14316.6 gi|55376436|ref|YP_134288.1| - 0.0043 17.3 0.0 0.0043 17.3 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4381) Insulin_TMD PF17870.1 gi|55376436|ref|YP_134288.1| - 0.0099 15.9 1.7 1.1 9.3 0.2 2.1 2 0 0 2 2 2 2 Insulin receptor trans-membrane segment DUF4083 PF13314.6 gi|55376436|ref|YP_134288.1| - 0.75 9.8 0.1 0.75 9.8 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Apq12 PF12716.7 gi|55376436|ref|YP_134288.1| - 0.8 9.7 9.3 0.71 9.9 1.7 2.1 2 0 0 2 2 2 0 Nuclear pore assembly and biogenesis Phage_holin_3_6 PF07332.11 gi|55376436|ref|YP_134288.1| - 7.1 6.7 8.2 16 5.5 8.2 1.6 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Thioredoxin PF00085.20 gi|55376437|ref|YP_134289.1| - 4.7e-11 42.6 0.0 5.9e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|55376437|ref|YP_134289.1| - 4.1e-07 30.4 0.6 5e-06 26.9 0.6 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|55376437|ref|YP_134289.1| - 0.00074 19.5 0.1 0.00095 19.2 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|55376437|ref|YP_134289.1| - 0.00093 19.4 0.3 0.051 13.7 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin DUF836 PF05768.14 gi|55376437|ref|YP_134289.1| - 0.0014 19.0 0.0 0.0019 18.6 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|55376437|ref|YP_134289.1| - 0.0035 17.0 0.0 0.0036 17.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|55376437|ref|YP_134289.1| - 0.015 15.5 0.6 0.044 14.0 0.3 2.0 2 1 0 2 2 2 0 Glutaredoxin HyaE PF07449.11 gi|55376437|ref|YP_134289.1| - 0.024 14.6 0.0 0.058 13.4 0.0 1.6 1 1 1 2 2 2 0 Hydrogenase-1 expression protein HyaE TraF PF13728.6 gi|55376437|ref|YP_134289.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 1 0 1 1 1 0 F plasmid transfer operon protein Copper-bind PF00127.20 gi|55376438|ref|YP_134290.1| - 3e-09 37.2 0.0 5.8e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SHOCT PF09851.9 gi|55376438|ref|YP_134290.1| - 3.2e-09 36.2 5.2 1e-08 34.6 4.3 1.9 2 0 0 2 2 2 1 Short C-terminal domain Cupredoxin_1 PF13473.6 gi|55376438|ref|YP_134290.1| - 0.0016 18.5 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain GvpG PF05120.12 gi|55376438|ref|YP_134290.1| - 0.0017 18.3 0.6 0.014 15.4 0.5 2.0 2 0 0 2 2 2 1 Gas vesicle protein G DUF1707 PF08044.11 gi|55376438|ref|YP_134290.1| - 0.0065 16.5 1.9 0.0098 15.9 1.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) VbhA PF18495.1 gi|55376438|ref|YP_134290.1| - 0.0093 15.8 0.6 0.025 14.4 0.6 1.7 1 0 0 1 1 1 1 Antitoxin VbhA TAT_signal PF10518.9 gi|55376438|ref|YP_134290.1| - 0.017 14.9 0.6 0.017 14.9 0.6 2.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence CdvA PF18822.1 gi|55376438|ref|YP_134290.1| - 0.023 14.5 0.1 0.031 14.1 0.1 1.2 1 0 0 1 1 1 0 CdvA-like coiled-coil domain ATP19 PF11022.8 gi|55376438|ref|YP_134290.1| - 0.032 14.6 0.0 0.27 11.6 0.0 2.3 3 0 0 3 3 3 0 ATP synthase subunit K ABC2_membrane_3 PF12698.7 gi|55376439|ref|YP_134291.1| - 4.1e-07 29.4 10.4 4.1e-07 29.4 10.4 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|55376439|ref|YP_134291.1| - 0.24 10.8 19.6 0.015 14.7 14.2 1.8 2 1 0 2 2 2 0 ABC-2 type transporter DUF4229 PF14012.6 gi|55376439|ref|YP_134291.1| - 1.1 9.4 18.0 9.2 6.5 0.1 4.2 4 1 0 4 4 4 0 Protein of unknown function (DUF4229) DUF4231 PF14015.6 gi|55376439|ref|YP_134291.1| - 1.8 9.1 5.8 4.5 7.8 1.8 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) ABC2_membrane_3 PF12698.7 gi|55376440|ref|YP_134292.1| - 3.8e-09 36.1 10.4 5.4e-09 35.6 10.4 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|55376440|ref|YP_134292.1| - 0.0031 17.0 14.1 0.0031 17.0 14.1 1.9 1 1 1 2 2 2 1 ABC-2 type transporter ABC_tran PF00005.27 gi|55376441|ref|YP_134293.1| - 4e-26 92.2 0.0 7e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|55376441|ref|YP_134293.1| - 8.1e-09 35.7 0.0 9e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|55376441|ref|YP_134293.1| - 0.00049 20.7 0.2 0.00089 19.8 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|55376441|ref|YP_134293.1| - 0.00053 19.7 0.1 0.00097 18.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|55376441|ref|YP_134293.1| - 0.0016 18.0 0.1 0.013 15.0 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|55376441|ref|YP_134293.1| - 0.0026 17.7 0.2 0.0041 17.1 0.2 1.4 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|55376441|ref|YP_134293.1| - 0.0028 17.7 0.2 0.0067 16.5 0.2 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|55376441|ref|YP_134293.1| - 0.0042 16.8 0.0 0.0065 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|55376441|ref|YP_134293.1| - 0.0095 15.7 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|55376441|ref|YP_134293.1| - 0.025 15.0 0.0 0.043 14.2 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.14 gi|55376441|ref|YP_134293.1| - 0.027 14.3 0.1 0.084 12.8 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Dynamin_N PF00350.23 gi|55376441|ref|YP_134293.1| - 0.036 14.1 0.9 0.11 12.5 0.9 1.9 1 1 0 1 1 1 0 Dynamin family NTPase_1 PF03266.15 gi|55376441|ref|YP_134293.1| - 0.076 12.9 0.9 4.3 7.2 0.4 2.3 2 1 0 2 2 2 0 NTPase MeaB PF03308.16 gi|55376441|ref|YP_134293.1| - 0.081 11.9 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PUA_3 PF17785.1 gi|55376441|ref|YP_134293.1| - 0.11 12.4 0.1 11 5.9 0.0 2.4 2 0 0 2 2 2 0 PUA-like domain AAA_22 PF13401.6 gi|55376441|ref|YP_134293.1| - 0.11 12.7 0.2 0.27 11.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|55376441|ref|YP_134293.1| - 0.12 11.5 0.4 0.32 10.0 0.1 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|55376441|ref|YP_134293.1| - 0.13 12.6 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Ploopntkinase3 PF18751.1 gi|55376441|ref|YP_134293.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 FtsK_SpoIIIE PF01580.18 gi|55376441|ref|YP_134293.1| - 0.18 11.2 0.3 0.38 10.1 0.1 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family NB-ARC PF00931.22 gi|55376441|ref|YP_134293.1| - 0.21 10.7 0.8 0.28 10.3 0.8 1.4 1 1 0 1 1 1 0 NB-ARC domain HTH_AsnC-type PF13404.6 gi|55376442|ref|YP_134294.1| - 1.1e-16 60.4 0.4 2.2e-16 59.4 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|55376442|ref|YP_134294.1| - 2.2e-15 55.9 0.1 4e-15 55.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|55376442|ref|YP_134294.1| - 5.3e-06 26.3 0.0 8.9e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|55376442|ref|YP_134294.1| - 8.6e-06 25.7 0.1 1.8e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|55376442|ref|YP_134294.1| - 0.00018 21.3 0.2 0.00031 20.6 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|55376442|ref|YP_134294.1| - 0.00026 20.8 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|55376442|ref|YP_134294.1| - 0.0011 18.7 0.3 0.018 14.8 0.0 2.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|55376442|ref|YP_134294.1| - 0.0018 18.1 0.1 0.0036 17.1 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain zf-FCS PF06467.14 gi|55376442|ref|YP_134294.1| - 0.0019 18.1 0.6 0.0042 17.0 0.6 1.6 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DprA_WH PF17782.1 gi|55376442|ref|YP_134294.1| - 0.0022 18.1 0.4 0.0073 16.4 0.2 1.9 2 0 0 2 2 2 1 DprA winged helix domain HTH_1 PF00126.27 gi|55376442|ref|YP_134294.1| - 0.0029 17.5 0.0 0.007 16.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|55376442|ref|YP_134294.1| - 0.0043 17.1 0.3 0.015 15.4 0.0 2.0 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|55376442|ref|YP_134294.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|55376442|ref|YP_134294.1| - 0.015 14.7 0.0 0.038 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.19 gi|55376442|ref|YP_134294.1| - 0.022 14.9 0.0 0.04 14.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|55376442|ref|YP_134294.1| - 0.051 13.5 0.0 0.16 11.9 0.1 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|55376442|ref|YP_134294.1| - 0.093 12.3 0.1 0.2 11.2 0.1 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 DUF2116 PF09889.9 gi|55376442|ref|YP_134294.1| - 0.21 11.6 4.2 1.4 9.0 4.2 2.0 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.13 gi|55376443|ref|YP_134295.1| - 1.2e-16 60.5 1.6 1.3e-16 60.4 1.6 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|55376443|ref|YP_134295.1| - 0.0071 16.6 0.1 0.0087 16.4 0.1 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|55376443|ref|YP_134295.1| - 0.0098 16.6 0.1 0.011 16.5 0.1 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase zf-FCS PF06467.14 gi|55376443|ref|YP_134295.1| - 0.024 14.6 0.5 0.04 13.9 0.5 1.5 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Methyltransf_11 PF08241.12 gi|55376444|ref|YP_134296.1| - 1.2e-19 70.7 0.0 2.3e-19 69.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|55376444|ref|YP_134296.1| - 1.6e-17 64.0 0.0 3e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|55376444|ref|YP_134296.1| - 1.3e-15 57.5 0.0 2e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|55376444|ref|YP_134296.1| - 2.4e-11 43.7 0.0 3.5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|55376444|ref|YP_134296.1| - 7.5e-09 35.3 0.0 1e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|55376444|ref|YP_134296.1| - 2.1e-06 27.2 0.0 2.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|55376444|ref|YP_134296.1| - 4e-06 27.5 0.0 8.8e-06 26.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain MTS PF05175.14 gi|55376444|ref|YP_134296.1| - 0.00014 21.5 0.0 0.00034 20.2 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain TehB PF03848.14 gi|55376444|ref|YP_134296.1| - 0.0023 17.4 0.0 0.0035 16.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|55376444|ref|YP_134296.1| - 0.0064 16.5 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|55376444|ref|YP_134296.1| - 0.0074 15.2 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PrmA PF06325.13 gi|55376444|ref|YP_134296.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|55376444|ref|YP_134296.1| - 0.02 14.4 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF411 PF04214.13 gi|55376446|ref|YP_134298.1| - 2.5e-29 101.0 0.2 3.9e-29 100.4 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF TAT_signal PF10518.9 gi|55376446|ref|YP_134298.1| - 0.21 11.5 2.2 0.52 10.3 2.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Usp PF00582.26 gi|55376447|ref|YP_134299.1| - 8.8e-44 149.4 0.1 3.4e-27 95.7 0.0 2.1 2 0 0 2 2 2 2 Universal stress protein family Phage_holin_3_6 PF07332.11 gi|55376448|ref|YP_134300.1| - 0.073 13.1 2.9 0.085 12.9 2.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Adeno_E3 PF06040.11 gi|55376448|ref|YP_134300.1| - 4.6 7.4 5.7 18 5.5 0.3 2.1 2 0 0 2 2 2 0 Adenovirus E3 protein DoxX PF07681.12 gi|55376449|ref|YP_134301.1| - 4.7e-08 33.5 11.0 4.7e-08 33.5 11.0 1.8 2 0 0 2 2 2 1 DoxX Trp_halogenase PF04820.14 gi|55376451|ref|YP_134303.1| - 9.5e-07 28.0 0.1 0.0007 18.6 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|55376451|ref|YP_134303.1| - 6.2e-05 22.4 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|55376451|ref|YP_134303.1| - 6.9e-05 22.1 0.5 0.0068 15.5 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|55376451|ref|YP_134303.1| - 8.7e-05 22.7 0.2 0.00029 21.0 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|55376451|ref|YP_134303.1| - 0.00016 20.9 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A DAO PF01266.24 gi|55376451|ref|YP_134303.1| - 0.00061 19.5 0.8 0.24 11.0 0.7 2.6 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|55376451|ref|YP_134303.1| - 0.0027 18.2 0.7 0.9 10.1 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|55376451|ref|YP_134303.1| - 0.0039 16.5 1.3 0.011 15.0 1.3 1.8 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|55376451|ref|YP_134303.1| - 0.0048 16.0 0.2 0.01 15.0 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|55376451|ref|YP_134303.1| - 0.005 15.6 0.5 0.015 14.0 0.2 1.8 2 0 0 2 2 2 1 HI0933-like protein DUF5055 PF16478.5 gi|55376451|ref|YP_134303.1| - 0.038 14.2 0.0 0.15 12.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5055) 3HCDH_N PF02737.18 gi|55376451|ref|YP_134303.1| - 0.063 13.2 0.3 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|55376451|ref|YP_134303.1| - 0.07 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|55376451|ref|YP_134303.1| - 0.082 13.4 0.1 0.52 10.8 0.1 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding DUF63 PF01889.17 gi|55376452|ref|YP_134304.1| - 8.7e-29 101.6 4.7 9.6e-29 101.4 4.7 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF4342 PF14242.6 gi|55376452|ref|YP_134304.1| - 0.23 11.5 0.3 0.23 11.5 0.3 3.0 3 1 1 4 4 4 0 Domain of unknown function (DUF4342) DUF2721 PF11026.8 gi|55376452|ref|YP_134304.1| - 4.2 7.3 7.0 4.1 7.3 0.5 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) HTH_11 PF08279.12 gi|55376453|ref|YP_134305.1| - 0.0021 18.0 1.3 0.27 11.2 0.0 2.3 1 1 1 2 2 2 2 HTH domain HTH_23 PF13384.6 gi|55376453|ref|YP_134305.1| - 0.0024 17.6 1.7 1.6 8.6 0.4 3.0 2 1 0 3 3 3 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|55376453|ref|YP_134305.1| - 0.036 14.1 0.0 0.089 12.8 0.0 1.7 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|55376453|ref|YP_134305.1| - 0.037 13.9 0.0 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|55376453|ref|YP_134305.1| - 0.07 12.7 0.0 0.58 9.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|55376453|ref|YP_134305.1| - 0.078 12.7 0.1 0.92 9.2 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|55376453|ref|YP_134305.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator E1-E2_ATPase PF00122.20 gi|55376454|ref|YP_134306.1| - 2.1e-49 167.5 1.0 5.5e-49 166.1 1.0 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55376454|ref|YP_134306.1| - 7.2e-49 166.9 3.4 1.6e-48 165.8 3.4 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55376454|ref|YP_134306.1| - 2.4e-29 101.6 1.5 1e-13 51.5 0.0 3.0 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|55376454|ref|YP_134306.1| - 1.8e-07 31.2 0.7 0.0088 15.8 1.0 2.7 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55376454|ref|YP_134306.1| - 0.0025 18.2 0.0 0.0067 16.8 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|55376454|ref|YP_134306.1| - 0.0073 16.4 1.7 0.09 12.9 0.0 3.6 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase E3_binding PF02817.17 gi|55376454|ref|YP_134306.1| - 0.067 13.6 0.2 36 4.8 0.1 3.4 2 0 0 2 2 2 0 e3 binding domain IreB PF06135.12 gi|55376454|ref|YP_134306.1| - 0.14 12.4 0.1 14 6.0 0.0 3.0 3 0 0 3 3 3 0 IreB regulatory phosphoprotein HTH_AsnC-type PF13404.6 gi|55376455|ref|YP_134307.1| - 5.9e-15 54.8 0.5 5.9e-15 54.8 0.5 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|55376455|ref|YP_134307.1| - 8e-14 50.9 0.0 1.3e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55376455|ref|YP_134307.1| - 2.1e-06 27.7 0.0 3.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55376455|ref|YP_134307.1| - 4.6e-06 26.4 0.0 7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55376455|ref|YP_134307.1| - 5.6e-06 26.1 0.1 8.8e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 MarR family YHS PF04945.13 gi|55376455|ref|YP_134307.1| - 0.00024 21.1 0.3 0.00041 20.4 0.3 1.4 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|55376455|ref|YP_134307.1| - 0.0014 18.6 2.9 0.0016 18.4 2.0 1.6 2 0 0 2 2 2 1 MYM-type Zinc finger with FCS sequence motif LIM PF00412.22 gi|55376455|ref|YP_134307.1| - 0.0017 18.6 1.6 0.0027 17.9 1.6 1.3 1 0 0 1 1 1 1 LIM domain MarR PF01047.22 gi|55376455|ref|YP_134307.1| - 0.0017 18.2 0.0 0.0039 17.1 0.0 1.6 2 0 0 2 2 2 1 MarR family Arc_trans_TRASH PF08394.10 gi|55376455|ref|YP_134307.1| - 0.019 15.3 2.6 0.03 14.7 2.6 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain TrmB PF01978.19 gi|55376455|ref|YP_134307.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ATPase-cat_bd PF12156.8 gi|55376455|ref|YP_134307.1| - 0.13 13.1 2.7 0.23 12.2 2.7 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_34 PF13601.6 gi|55376455|ref|YP_134307.1| - 0.17 12.1 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HMA PF00403.26 gi|55376456|ref|YP_134308.1| - 4.2e-19 68.7 1.6 4.7e-19 68.6 1.6 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2070 PF09843.9 gi|55376456|ref|YP_134308.1| - 0.064 11.5 0.3 0.065 11.5 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Aconitase PF00330.20 gi|55376457|ref|YP_134309.1| - 1.1e-171 571.9 0.0 1.6e-171 571.4 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|55376457|ref|YP_134309.1| - 2.4e-41 141.1 0.0 4.7e-41 140.2 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain BAT PF15915.5 gi|55376457|ref|YP_134309.1| - 0.054 13.4 4.3 0.36 10.7 0.2 3.8 4 0 0 4 4 4 0 GAF and HTH_10 associated domain DUF3663 PF12404.8 gi|55376457|ref|YP_134309.1| - 0.2 11.7 0.0 0.51 10.4 0.0 1.6 1 0 0 1 1 1 0 Peptidase SHOCT PF09851.9 gi|55376458|ref|YP_134310.1| - 4.7e-10 38.9 0.5 6.7e-10 38.4 0.5 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|55376458|ref|YP_134310.1| - 0.00026 21.0 2.0 0.00065 19.7 2.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|55376458|ref|YP_134310.1| - 0.0011 19.0 0.7 0.0041 17.1 0.7 1.9 1 1 0 1 1 1 1 Gas vesicle protein G VbhA PF18495.1 gi|55376458|ref|YP_134310.1| - 0.031 14.1 0.6 0.052 13.4 0.6 1.4 1 0 0 1 1 1 0 Antitoxin VbhA UPF0093 PF03653.13 gi|55376458|ref|YP_134310.1| - 0.072 13.3 1.6 0.93 9.7 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0093) DUF4131 PF13567.6 gi|55376458|ref|YP_134310.1| - 0.099 12.3 2.1 0.61 9.7 1.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DoxX PF07681.12 gi|55376459|ref|YP_134311.1| - 3.4e-11 43.6 10.7 3.4e-11 43.6 10.7 1.8 2 0 0 2 2 2 1 DoxX DUF3592 PF12158.8 gi|55376460|ref|YP_134312.1| - 0.021 14.9 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3592) HMA PF00403.26 gi|55376461|ref|YP_134313.1| - 1.4e-18 67.1 1.8 1.6e-18 66.9 1.8 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain E1-E2_ATPase PF00122.20 gi|55376462|ref|YP_134314.1| - 8.7e-51 172.0 1.8 8.7e-51 172.0 1.8 2.8 3 1 0 3 3 3 2 E1-E2 ATPase Hydrolase PF00702.26 gi|55376462|ref|YP_134314.1| - 9.8e-44 150.2 7.5 1.7e-43 149.4 7.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55376462|ref|YP_134314.1| - 1.6e-05 24.8 0.1 0.0007 19.4 0.2 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55376462|ref|YP_134314.1| - 8.6e-05 23.0 0.3 0.00029 21.3 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.18 gi|55376462|ref|YP_134314.1| - 0.11 12.6 0.0 0.37 10.8 0.0 1.9 1 0 0 1 1 1 0 DNA photolyase Zip PF02535.22 gi|55376462|ref|YP_134314.1| - 2.1 7.5 15.0 0.67 9.1 9.1 3.0 2 1 0 2 2 2 0 ZIP Zinc transporter PadR PF03551.14 gi|55376464|ref|YP_134316.1| - 6.4e-15 54.9 0.5 7.7e-15 54.6 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|55376464|ref|YP_134316.1| - 0.016 15.2 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|55376464|ref|YP_134316.1| - 0.07 13.6 0.1 0.12 12.9 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain E1-E2_ATPase PF00122.20 gi|55376465|ref|YP_134317.1| - 1.6e-37 128.8 3.9 1.6e-37 128.8 3.9 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55376465|ref|YP_134317.1| - 8.8e-31 107.8 4.9 1.4e-30 107.1 4.9 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55376465|ref|YP_134317.1| - 2.3e-11 44.0 0.2 8.2e-11 42.2 0.2 2.1 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|55376465|ref|YP_134317.1| - 0.092 12.5 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase PMSR PF01625.21 gi|55376465|ref|YP_134317.1| - 0.2 11.8 0.0 0.89 9.7 0.0 2.0 2 0 0 2 2 2 0 Peptide methionine sulfoxide reductase MWFE PF15879.5 gi|55376466|ref|YP_134318.1| - 0.46 10.7 1.6 0.49 10.6 0.2 1.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase MWFE subunit COX7a PF02238.15 gi|55376466|ref|YP_134318.1| - 1.1 9.8 4.4 1.9 8.9 0.2 2.1 1 1 1 2 2 2 0 Cytochrome c oxidase subunit VII Peptidase_C33 PF05412.12 gi|55376467|ref|YP_134319.1| - 0.079 13.0 0.4 0.13 12.3 0.4 1.3 1 0 0 1 1 1 0 Equine arterivirus Nsp2-type cysteine proteinase SpoVAB PF13782.6 gi|55376468|ref|YP_134320.1| - 0.038 14.3 1.1 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 Stage V sporulation protein AB Copper-bind PF00127.20 gi|55376469|ref|YP_134321.1| - 1.5e-12 47.8 0.2 2.1e-12 47.3 0.2 1.3 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|55376469|ref|YP_134321.1| - 0.005 16.9 0.3 0.0089 16.1 0.3 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|55376469|ref|YP_134321.1| - 0.02 14.7 2.4 0.065 13.1 2.4 1.9 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.20 gi|55376469|ref|YP_134321.1| - 0.13 12.1 6.1 0.062 13.1 1.7 2.5 2 1 0 2 2 2 0 PKD domain BLOC1_2 PF10046.9 gi|55376470|ref|YP_134322.1| - 0.001 19.3 3.3 0.77 10.1 0.0 2.9 2 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Hrs_helical PF12210.8 gi|55376470|ref|YP_134322.1| - 0.0094 16.5 0.4 0.0094 16.5 0.4 2.3 2 1 1 3 3 3 1 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF4600 PF15372.6 gi|55376470|ref|YP_134322.1| - 0.018 15.5 1.7 0.048 14.1 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4600) APG6_N PF17675.1 gi|55376470|ref|YP_134322.1| - 0.018 15.6 6.6 0.62 10.6 0.0 2.4 2 1 0 2 2 2 0 Apg6 coiled-coil region YkyA PF10368.9 gi|55376470|ref|YP_134322.1| - 0.041 13.6 2.0 1 9.0 0.3 2.4 2 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Holin_BhlA PF10960.8 gi|55376470|ref|YP_134322.1| - 0.044 13.8 1.4 1 9.4 0.4 2.8 3 0 0 3 3 3 0 BhlA holin family Sec8_exocyst PF04048.14 gi|55376470|ref|YP_134322.1| - 0.045 13.7 0.9 0.24 11.3 0.1 2.4 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain Terminase_GpA PF05876.12 gi|55376470|ref|YP_134322.1| - 0.06 11.9 0.3 0.094 11.3 0.3 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) FH2 PF02181.23 gi|55376470|ref|YP_134322.1| - 0.092 11.8 0.9 0.18 10.9 0.4 1.6 2 0 0 2 2 2 0 Formin Homology 2 Domain ICA69 PF04629.14 gi|55376470|ref|YP_134322.1| - 0.095 13.0 0.1 0.16 12.3 0.1 1.3 1 0 0 1 1 1 0 Islet cell autoantigen ICA69, C-terminal domain Prefoldin PF02996.17 gi|55376470|ref|YP_134322.1| - 0.41 10.6 3.6 1.8 8.5 0.6 2.5 2 1 0 2 2 2 0 Prefoldin subunit Cir_Bir_Yir PF06022.11 gi|55376471|ref|YP_134323.1| - 0.76 9.2 1.6 0.75 9.2 1.6 1.1 1 0 0 1 1 1 0 Plasmodium variant antigen protein Cir/Yir/Bir DUF2207 PF09972.9 gi|55376471|ref|YP_134323.1| - 5.9 5.5 5.0 6 5.5 5.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Cu-oxidase_2 PF07731.14 gi|55376472|ref|YP_134324.1| - 2.4e-30 105.1 15.2 3e-19 69.1 2.2 3.4 2 1 1 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|55376472|ref|YP_134324.1| - 3.4e-23 81.9 7.6 2.2e-19 69.6 1.3 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|55376472|ref|YP_134324.1| - 1.8e-11 44.4 0.1 7.7e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|55376472|ref|YP_134324.1| - 6.1e-05 23.1 0.0 0.37 10.9 0.0 2.6 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|55376472|ref|YP_134324.1| - 0.036 13.9 4.7 0.067 13.1 4.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CPBP PF02517.16 gi|55376473|ref|YP_134325.1| - 1.2e-16 60.8 2.5 1.2e-16 60.8 2.5 2.5 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease Phage_Coat_B PF05356.11 gi|55376473|ref|YP_134325.1| - 2.4 8.1 6.0 0.39 10.7 0.5 2.4 3 0 0 3 3 3 0 Phage Coat protein B ATP-synt_J PF04911.12 gi|55376473|ref|YP_134325.1| - 3.1 7.4 5.1 1.7 8.3 0.1 2.5 2 0 0 2 2 2 0 ATP synthase j chain DsbB PF02600.16 gi|55376474|ref|YP_134326.1| - 6.6e-14 52.6 14.1 2.4e-13 50.8 14.1 1.7 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Thioredoxin_4 PF13462.6 gi|55376475|ref|YP_134327.1| - 3.9e-23 82.4 0.0 1.6e-22 80.4 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin DSBA PF01323.20 gi|55376475|ref|YP_134327.1| - 5.9e-08 32.7 1.6 1.4e-06 28.3 0.1 2.2 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|55376475|ref|YP_134327.1| - 0.00031 21.1 0.4 0.042 14.3 0.0 3.0 3 1 0 3 3 3 1 Thioredoxin-like domain zf-C2H2_4 PF13894.6 gi|55376475|ref|YP_134327.1| - 0.00033 21.2 6.6 1.2 10.2 0.1 3.3 3 0 0 3 3 3 2 C2H2-type zinc finger HNH_5 PF14279.6 gi|55376475|ref|YP_134327.1| - 0.004 17.0 1.8 0.036 13.9 0.1 2.5 2 1 0 2 2 2 1 HNH endonuclease zf-Di19 PF05605.12 gi|55376475|ref|YP_134327.1| - 0.0079 16.5 5.7 12 6.3 0.0 3.2 2 1 1 3 3 3 2 Drought induced 19 protein (Di19), zinc-binding UBZ_FAAP20 PF15750.5 gi|55376475|ref|YP_134327.1| - 0.066 13.2 3.0 2.1 8.4 0.4 2.5 2 0 0 2 2 2 0 Ubiquitin-binding zinc-finger Thioredoxin_3 PF13192.6 gi|55376475|ref|YP_134327.1| - 0.25 11.4 1.4 9.3 6.4 0.0 3.1 4 0 0 4 4 4 0 Thioredoxin domain DZR PF12773.7 gi|55376475|ref|YP_134327.1| - 0.49 10.5 2.8 0.57 10.2 0.8 1.9 2 0 0 2 2 2 0 Double zinc ribbon zf-RING_2 PF13639.6 gi|55376475|ref|YP_134327.1| - 2.1 8.8 4.3 1.7 9.0 1.3 2.2 2 0 0 2 2 2 0 Ring finger domain COX15-CtaA PF02628.15 gi|55376476|ref|YP_134328.1| - 1.3e-25 90.2 14.2 2.9e-25 89.0 14.2 1.6 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein MerC PF03203.14 gi|55376476|ref|YP_134328.1| - 1.2 9.6 12.0 0.22 12.0 7.4 1.9 1 1 1 2 2 2 0 MerC mercury resistance protein TFIIB PF00382.19 gi|55376477|ref|YP_134329.1| - 8.5e-35 118.6 0.1 9.9e-17 60.8 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55376477|ref|YP_134329.1| - 1.7e-15 56.2 1.2 3.1e-15 55.4 1.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|55376477|ref|YP_134329.1| - 0.00023 21.2 0.0 0.00043 20.4 0.0 1.4 1 0 0 1 1 1 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|55376477|ref|YP_134329.1| - 0.053 13.1 0.1 0.18 11.3 0.1 2.0 1 0 0 1 1 1 0 Sigma-70, region 4 Zn-ribbon_8 PF09723.10 gi|55376477|ref|YP_134329.1| - 0.065 13.4 1.1 6.1 7.1 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain IBR PF01485.21 gi|55376477|ref|YP_134329.1| - 0.088 13.0 0.6 0.16 12.2 0.6 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zinc-ribbons_6 PF07191.12 gi|55376477|ref|YP_134329.1| - 0.15 12.0 0.5 0.26 11.3 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|55376477|ref|YP_134329.1| - 0.15 11.5 1.8 8.7 5.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PadR PF03551.14 gi|55376478|ref|YP_134330.1| - 0.0056 16.6 0.0 0.57 10.2 0.0 2.2 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family Mrr_N PF14338.6 gi|55376478|ref|YP_134330.1| - 0.025 14.7 0.0 0.17 12.0 0.0 1.9 1 1 1 2 2 2 0 Mrr N-terminal domain HTH_20 PF12840.7 gi|55376479|ref|YP_134331.1| - 2.6e-12 46.6 0.2 3.7e-12 46.1 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|55376479|ref|YP_134331.1| - 0.00017 21.4 0.0 0.00091 19.1 0.0 2.1 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF1492 PF07374.11 gi|55376479|ref|YP_134331.1| - 0.00036 20.6 0.0 0.0042 17.2 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1492) MarR_2 PF12802.7 gi|55376479|ref|YP_134331.1| - 0.0005 19.9 0.0 0.00082 19.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|55376479|ref|YP_134331.1| - 0.00092 19.0 0.2 0.0022 17.7 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF4712 PF15830.5 gi|55376479|ref|YP_134331.1| - 0.024 14.3 0.2 3.4 7.3 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4712) HTH_7 PF02796.15 gi|55376479|ref|YP_134331.1| - 0.035 14.2 0.0 0.31 11.2 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain of resolvase PadR PF03551.14 gi|55376479|ref|YP_134331.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FUR PF01475.19 gi|55376479|ref|YP_134331.1| - 0.15 12.2 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family FAM163 PF15069.6 gi|55376479|ref|YP_134331.1| - 0.2 12.1 0.0 0.31 11.5 0.0 1.3 1 1 0 1 1 1 0 FAM163 family HTH_5 PF01022.20 gi|55376479|ref|YP_134331.1| - 0.23 11.4 1.0 0.24 11.3 0.1 1.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family YtpI PF14007.6 gi|55376480|ref|YP_134332.1| - 0.76 10.0 13.8 1.9 8.7 0.8 2.1 2 0 0 2 2 2 0 YtpI-like protein DUF5353 PF17304.2 gi|55376480|ref|YP_134332.1| - 1.9 8.3 5.5 0.88 9.4 2.8 1.9 1 1 1 2 2 2 0 Family of unknown function (DUF5353) DUF4199 PF13858.6 gi|55376480|ref|YP_134332.1| - 2.6 8.4 13.3 0.097 13.1 6.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) Arylsulfotran_2 PF14269.6 gi|55376481|ref|YP_134333.1| - 4.4e-11 42.7 3.2 4.2e-09 36.2 0.1 3.1 2 1 1 3 3 3 2 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|55376481|ref|YP_134333.1| - 1.9e-08 33.7 0.8 1.1e-06 27.8 0.7 2.9 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|55376481|ref|YP_134333.1| - 5.4 7.3 7.2 3 8.0 0.1 3.8 5 0 0 5 5 5 0 NHL repeat SpoIIAA-like PF11964.8 gi|55376482|ref|YP_134334.1| - 8.4e-12 46.0 0.0 1.1e-11 45.6 0.0 1.1 1 0 0 1 1 1 1 SpoIIAA-like Cation_efflux PF01545.21 gi|55376483|ref|YP_134335.1| - 2e-42 145.2 12.7 2.4e-42 144.9 12.7 1.1 1 0 0 1 1 1 1 Cation efflux family Kei1 PF08552.11 gi|55376484|ref|YP_134336.1| - 0.023 14.6 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Inositolphosphorylceramide synthase subunit Kei1 E1-E2_ATPase PF00122.20 gi|55376485|ref|YP_134337.1| - 2e-54 183.9 1.6 2e-54 183.9 1.6 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55376485|ref|YP_134337.1| - 1.3e-46 159.6 4.4 1.6e-46 159.3 2.7 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55376485|ref|YP_134337.1| - 1.1e-32 112.2 3.9 1.4e-15 57.5 0.0 3.9 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.7 gi|55376485|ref|YP_134337.1| - 0.0002 21.8 0.1 0.00089 19.7 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55376485|ref|YP_134337.1| - 0.0013 18.5 0.8 0.0073 16.1 0.3 2.2 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Anti-TRAP PF15777.5 gi|55376485|ref|YP_134337.1| - 0.024 14.6 0.4 3.9 7.5 0.1 2.7 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Pro_Al_protease PF02983.14 gi|55376485|ref|YP_134337.1| - 0.051 13.6 2.1 0.39 10.8 0.0 3.1 3 0 0 3 3 3 0 Alpha-lytic protease prodomain Glyco_tran_WecB PF03808.13 gi|55376485|ref|YP_134337.1| - 0.098 12.6 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family zf-LITAF-like PF10601.9 gi|55376485|ref|YP_134337.1| - 5.3 7.4 5.5 29 5.0 0.1 3.1 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain YtpI PF14007.6 gi|55376486|ref|YP_134338.1| - 0.013 15.6 0.8 0.015 15.5 0.8 1.0 1 0 0 1 1 1 0 YtpI-like protein Cyt_c_ox_IV PF12270.8 gi|55376487|ref|YP_134339.1| - 0.0014 18.8 1.4 0.0014 18.8 1.4 2.0 1 1 0 2 2 2 1 Cytochrome c oxidase subunit IV PIRT PF15099.6 gi|55376487|ref|YP_134339.1| - 0.013 15.1 2.5 0.03 13.9 1.2 2.1 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family PetG PF02529.15 gi|55376487|ref|YP_134339.1| - 0.028 14.3 2.7 0.097 12.5 2.7 1.9 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 Gram_pos_anchor PF00746.21 gi|55376487|ref|YP_134339.1| - 0.58 10.2 0.1 0.58 10.2 0.1 3.3 4 0 0 4 4 4 0 LPXTG cell wall anchor motif ATP1G1_PLM_MAT8 PF02038.16 gi|55376487|ref|YP_134339.1| - 0.94 9.0 7.7 1.6 8.2 0.3 3.1 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family zf-C2H2 PF00096.26 gi|55376488|ref|YP_134340.1| - 0.014 15.8 0.3 0.021 15.3 0.3 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type Iron_transport PF10634.9 gi|55376490|ref|YP_134342.1| - 5.6e-09 36.3 0.0 7e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|55376490|ref|YP_134342.1| - 0.0035 17.1 0.5 0.0071 16.1 0.5 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Iron_transport PF10634.9 gi|55376491|ref|YP_134343.1| - 4.1e-06 27.0 0.0 0.00012 22.3 0.0 2.3 2 1 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|55376491|ref|YP_134343.1| - 0.056 13.3 0.7 0.1 12.5 0.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.9 gi|55376492|ref|YP_134344.1| - 0.0028 17.4 1.4 0.0028 17.4 1.4 1.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence PEMT PF04191.13 gi|55376493|ref|YP_134345.1| - 6.4e-14 52.2 0.2 1.2e-13 51.4 0.2 1.5 1 0 0 1 1 1 1 Phospholipid methyltransferase NnrU PF07298.11 gi|55376493|ref|YP_134345.1| - 0.0051 16.4 1.4 0.0071 15.9 1.4 1.3 1 0 0 1 1 1 1 NnrU protein ICMT PF04140.14 gi|55376493|ref|YP_134345.1| - 0.02 15.3 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 Isoprenylcysteine carboxyl methyltransferase (ICMT) family HTH_24 PF13412.6 gi|55376495|ref|YP_134347.1| - 1.4e-12 47.0 0.0 2e-06 27.2 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|55376495|ref|YP_134347.1| - 1.1e-07 31.8 0.6 0.013 15.6 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|55376495|ref|YP_134347.1| - 8.4e-07 28.8 0.0 0.047 13.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55376495|ref|YP_134347.1| - 2.9e-06 27.1 0.5 0.026 14.4 0.0 2.9 4 0 0 4 4 4 2 MarR family BLACT_WH PF17778.1 gi|55376495|ref|YP_134347.1| - 1.2e-05 25.2 0.3 0.06 13.3 0.0 2.4 2 0 0 2 2 2 2 Beta-lactamase associated winged helix domain MarR PF01047.22 gi|55376495|ref|YP_134347.1| - 0.0005 20.0 0.0 0.013 15.4 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_DeoR PF08220.12 gi|55376495|ref|YP_134347.1| - 0.065 13.0 0.1 0.49 10.2 0.0 2.2 2 1 0 2 2 2 0 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|55376495|ref|YP_134347.1| - 0.069 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_10 PF04967.12 gi|55376495|ref|YP_134347.1| - 0.093 12.6 0.0 13 5.7 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain TrmB PF01978.19 gi|55376495|ref|YP_134347.1| - 0.15 12.0 0.0 1.1 9.2 0.0 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|55376496|ref|YP_134348.1| - 1.7e-16 59.9 0.6 2.4e-16 59.5 0.6 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|55376496|ref|YP_134348.1| - 0.0044 17.0 0.1 0.0066 16.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|55376496|ref|YP_134348.1| - 0.13 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF1931 PF09123.11 gi|55376497|ref|YP_134349.1| - 0.00036 20.7 0.6 0.00038 20.6 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|55376497|ref|YP_134349.1| - 0.0019 18.4 0.0 0.0025 18.0 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Exonuc_VII_L PF02601.15 gi|55376498|ref|YP_134350.1| - 8.7e-52 176.6 0.7 1.2e-51 176.2 0.7 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|55376498|ref|YP_134350.1| - 1.6e-18 66.7 0.0 2.6e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.25 gi|55376498|ref|YP_134350.1| - 0.00021 21.2 0.0 0.00038 20.4 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Ribosomal_S21 PF01165.20 gi|55376498|ref|YP_134350.1| - 0.095 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein S21 PRMT5 PF05185.16 gi|55376498|ref|YP_134350.1| - 0.16 11.8 0.1 0.38 10.6 0.1 1.7 2 0 0 2 2 2 0 PRMT5 arginine-N-methyltransferase Exonuc_VII_S PF02609.16 gi|55376499|ref|YP_134351.1| - 6.9e-13 48.4 3.0 7.6e-13 48.3 3.0 1.0 1 0 0 1 1 1 1 Exonuclease VII small subunit TBCA PF02970.16 gi|55376499|ref|YP_134351.1| - 0.021 15.1 0.4 0.023 15.0 0.4 1.1 1 0 0 1 1 1 0 Tubulin binding cofactor A Rop PF01815.16 gi|55376499|ref|YP_134351.1| - 0.077 12.9 0.6 0.087 12.7 0.6 1.2 1 0 0 1 1 1 0 Rop protein DUF3267 PF11667.8 gi|55376500|ref|YP_134352.1| - 1.8e-05 24.9 0.5 3.8e-05 23.9 0.5 1.5 1 1 0 1 1 1 1 Putative zincin peptidase EFG_C PF00679.24 gi|55376502|ref|YP_134354.1| - 0.002 18.1 0.0 0.0023 17.9 0.0 1.1 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF4349 PF14257.6 gi|55376502|ref|YP_134354.1| - 0.072 12.5 0.0 0.075 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) DUF916 PF06030.12 gi|55376504|ref|YP_134356.1| - 0.14 12.2 0.6 1.6 8.8 1.1 2.2 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF916) DUF3558 PF12079.8 gi|55376505|ref|YP_134357.1| - 0.37 10.8 4.7 0.58 10.1 3.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3558) AAA_10 PF12846.7 gi|55376508|ref|YP_134360.1| - 8.8e-06 24.9 0.3 0.1 11.5 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|55376508|ref|YP_134360.1| - 2.2e-05 24.7 0.3 0.03 14.6 0.1 2.8 3 0 0 3 3 3 2 AAA domain TrwB_AAD_bind PF10412.9 gi|55376508|ref|YP_134360.1| - 0.028 13.3 0.4 0.15 10.9 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CENP-F_leu_zip PF10473.9 gi|55376508|ref|YP_134360.1| - 0.047 13.7 2.1 0.052 13.6 0.5 1.8 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF853 PF05872.12 gi|55376508|ref|YP_134360.1| - 0.048 12.3 1.4 0.12 10.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) T4SS-DNA_transf PF02534.14 gi|55376509|ref|YP_134361.1| - 4e-05 22.6 0.0 7.6e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer DUF87 PF01935.17 gi|55376509|ref|YP_134361.1| - 0.00034 20.8 0.0 0.0034 17.5 0.0 2.4 1 1 0 1 1 1 1 Helicase HerA, central domain Pox_D5 PF03288.16 gi|55376509|ref|YP_134361.1| - 0.0089 16.5 0.0 0.021 15.3 0.0 1.6 1 0 0 1 1 1 1 Poxvirus D5 protein-like TraG-D_C PF12696.7 gi|55376509|ref|YP_134361.1| - 0.017 15.1 0.0 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG DUF1664 PF07889.12 gi|55376510|ref|YP_134362.1| - 0.0011 19.0 1.1 0.0035 17.4 1.2 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF1664) UPF0242 PF06785.11 gi|55376510|ref|YP_134362.1| - 0.0026 17.9 6.1 0.01 16.0 2.0 2.3 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus PI3K_P85_iSH2 PF16454.5 gi|55376510|ref|YP_134362.1| - 0.006 16.2 4.6 0.006 16.2 4.6 2.5 3 0 0 3 3 3 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4164 PF13747.6 gi|55376510|ref|YP_134362.1| - 0.0065 16.7 9.6 0.0065 16.7 9.6 3.6 4 0 0 4 4 4 1 Domain of unknown function (DUF4164) FlxA PF14282.6 gi|55376510|ref|YP_134362.1| - 0.017 15.1 1.0 0.017 15.1 1.0 1.7 2 0 0 2 2 1 0 FlxA-like protein HAUS-augmin3 PF14932.6 gi|55376510|ref|YP_134362.1| - 0.062 12.9 4.9 0.13 11.8 4.9 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 FlaC_arch PF05377.11 gi|55376510|ref|YP_134362.1| - 0.1 13.0 2.7 0.17 12.3 0.3 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|55376510|ref|YP_134362.1| - 0.11 12.8 2.0 0.28 11.5 2.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) NPV_P10 PF05531.12 gi|55376510|ref|YP_134362.1| - 0.21 12.0 0.1 1.4 9.5 0.1 2.3 2 0 0 2 2 1 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 gi|55376510|ref|YP_134362.1| - 0.32 11.5 4.4 2 8.9 0.3 2.8 3 0 0 3 3 2 0 Protein of unknown function DUF16 VGPC1_C PF16799.5 gi|55376510|ref|YP_134362.1| - 0.51 10.3 7.3 0.77 9.8 3.2 2.3 1 1 1 2 2 2 0 C-terminal membrane-localisation domain of ion-channel, VCN1 Spc7 PF08317.11 gi|55376510|ref|YP_134362.1| - 0.55 9.1 9.5 0.042 12.7 4.1 1.7 2 0 0 2 2 2 0 Spc7 kinetochore protein YabA PF06156.13 gi|55376510|ref|YP_134362.1| - 0.61 10.8 10.1 0.1 13.2 5.6 1.9 2 0 0 2 2 2 0 Initiation control protein YabA Cep57_MT_bd PF06657.13 gi|55376510|ref|YP_134362.1| - 0.73 10.3 6.0 0.76 10.3 2.2 2.6 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 V_ATPase_I PF01496.19 gi|55376510|ref|YP_134362.1| - 0.93 7.3 2.1 1.6 6.5 2.1 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ADIP PF11559.8 gi|55376510|ref|YP_134362.1| - 1.1 9.4 15.3 0.077 13.1 8.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding DUF641 PF04859.12 gi|55376510|ref|YP_134362.1| - 1.2 9.5 7.1 0.16 12.3 2.6 1.8 2 0 0 2 2 1 0 Plant protein of unknown function (DUF641) Fmp27_WPPW PF10359.9 gi|55376510|ref|YP_134362.1| - 1.3 7.8 4.9 2.2 7.0 4.9 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Med21 PF11221.8 gi|55376510|ref|YP_134362.1| - 1.7 8.9 7.2 22 5.3 3.1 3.3 3 0 0 3 3 3 0 Subunit 21 of Mediator complex DUF4201 PF13870.6 gi|55376510|ref|YP_134362.1| - 1.8 8.2 15.0 0.017 14.9 6.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Atg14 PF10186.9 gi|55376510|ref|YP_134362.1| - 2.6 7.0 9.0 0.049 12.7 2.3 1.5 2 0 0 2 2 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|55376510|ref|YP_134362.1| - 2.7 7.3 8.3 2.2 7.5 4.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) HrpB7 PF09486.10 gi|55376510|ref|YP_134362.1| - 3.7 7.9 17.8 0.13 12.6 4.4 3.2 3 0 0 3 3 3 0 Bacterial type III secretion protein (HrpB7) CCDC144C PF14915.6 gi|55376510|ref|YP_134362.1| - 4.4 6.3 15.4 0.03 13.4 6.3 1.8 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region CENP-F_leu_zip PF10473.9 gi|55376510|ref|YP_134362.1| - 7.6 6.6 18.1 0.041 13.9 7.5 2.4 2 1 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PHD PF00628.29 gi|55376513|ref|YP_134365.1| - 0.79 9.7 7.1 0.16 11.9 1.2 2.4 3 0 0 3 3 3 0 PHD-finger Zn_Tnp_IS1595 PF12760.7 gi|55376513|ref|YP_134365.1| - 1.6 8.7 5.3 1 9.4 0.3 2.4 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|55376514|ref|YP_134366.1| - 0.0024 17.2 0.3 0.62 9.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|55376514|ref|YP_134366.1| - 0.048 14.1 0.2 0.12 12.7 0.2 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Nudix_N_2 PF14803.6 gi|55376514|ref|YP_134366.1| - 0.32 11.0 0.2 0.32 11.0 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_ZBD PF03119.16 gi|55376514|ref|YP_134366.1| - 0.44 10.6 5.3 0.25 11.4 1.4 2.6 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA_anti-codon PF01336.25 gi|55376517|ref|YP_134369.1| - 0.00055 19.9 0.2 0.0012 18.8 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain AlbA_2 PF04326.14 gi|55376518|ref|YP_134370.1| - 8.1e-06 26.2 0.0 1.2e-05 25.6 0.0 1.3 1 0 0 1 1 1 1 Putative DNA-binding domain TFIIB PF00382.19 gi|55376520|ref|YP_134372.1| - 4e-28 97.3 2.9 2.6e-13 49.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|55376520|ref|YP_134372.1| - 6.3e-13 48.0 2.2 1.2e-12 47.1 2.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|55376520|ref|YP_134372.1| - 0.0011 19.1 0.0 0.0021 18.1 0.0 1.4 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain Cyclin_C PF02984.19 gi|55376520|ref|YP_134372.1| - 0.05 13.7 0.0 0.093 12.8 0.0 1.4 1 0 0 1 1 1 0 Cyclin, C-terminal domain PHF5 PF03660.14 gi|55376520|ref|YP_134372.1| - 0.069 13.4 0.7 0.17 12.1 0.7 1.6 1 0 0 1 1 1 0 PHF5-like protein UPF0547 PF10571.9 gi|55376520|ref|YP_134372.1| - 0.11 12.6 1.8 0.26 11.4 1.8 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|55376520|ref|YP_134372.1| - 1.1 9.5 4.6 4.2 7.6 0.7 2.5 1 1 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|55376521|ref|YP_134373.1| - 0.025 14.0 2.7 0.025 14.0 2.7 2.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|55376521|ref|YP_134373.1| - 0.5 11.2 7.6 2.4 8.9 0.2 2.7 2 1 0 3 3 3 0 zinc-ribbon family DZR PF12773.7 gi|55376521|ref|YP_134373.1| - 2.9 8.0 9.2 0.3 11.1 0.6 2.7 2 1 0 2 2 2 0 Double zinc ribbon DUF2116 PF09889.9 gi|55376521|ref|YP_134373.1| - 8.8 6.4 6.3 0.71 9.9 0.8 1.9 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF1707 PF08044.11 gi|55376523|ref|YP_134375.1| - 0.29 11.2 0.2 0.29 11.2 0.2 3.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1707) Syntaxin-6_N PF09177.11 gi|55376523|ref|YP_134375.1| - 0.95 10.1 11.6 1 10.0 2.3 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal NIR_SIR_ferr PF03460.17 gi|55376526|ref|YP_134378.1| - 0.11 12.4 0.0 3.4 7.6 0.0 2.2 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain SBP_bac_1 PF01547.25 gi|55376527|ref|YP_134379.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein HTH_10 PF04967.12 gi|55376529|ref|YP_134381.1| - 1.9e-15 56.4 0.1 4.1e-15 55.3 0.0 1.6 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.7 gi|55376529|ref|YP_134381.1| - 5.4e-05 23.0 0.0 0.0002 21.2 0.0 2.0 1 0 0 1 1 1 1 MarR family HTH_30 PF13556.6 gi|55376529|ref|YP_134381.1| - 7e-05 22.5 0.1 0.00022 21.0 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 gi|55376529|ref|YP_134381.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_psq PF05225.16 gi|55376529|ref|YP_134381.1| - 0.0075 16.0 0.3 0.028 14.2 0.3 2.0 1 1 0 1 1 1 1 helix-turn-helix, Psq domain HTH_20 PF12840.7 gi|55376529|ref|YP_134381.1| - 0.012 15.6 0.5 0.033 14.3 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|55376529|ref|YP_134381.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|55376529|ref|YP_134381.1| - 0.075 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|55376529|ref|YP_134381.1| - 0.11 12.7 0.1 0.24 11.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|55376529|ref|YP_134381.1| - 0.12 12.1 0.0 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 E1-E2_ATPase PF00122.20 gi|55376530|ref|YP_134382.1| - 4.9e-56 189.1 0.6 2.4e-55 186.9 0.9 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55376530|ref|YP_134382.1| - 8.8e-41 140.5 10.2 1.8e-40 139.5 9.3 2.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55376530|ref|YP_134382.1| - 3.3e-16 59.5 3.9 7.7e-16 58.3 0.0 3.2 4 0 0 4 4 4 1 Heavy-metal-associated domain HAD PF12710.7 gi|55376530|ref|YP_134382.1| - 0.00055 20.4 0.5 0.0023 18.4 0.5 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|55376530|ref|YP_134382.1| - 0.00093 19.0 1.1 0.0076 16.0 0.7 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Myosin_N PF02736.19 gi|55376530|ref|YP_134382.1| - 0.052 13.4 0.3 11 5.9 0.0 2.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain AdHead_fibreRBD PF16812.5 gi|55376531|ref|YP_134383.1| - 0.057 13.2 0.2 0.062 13.1 0.2 1.1 1 0 0 1 1 1 0 C-terminal head domain of the fowl adenovirus type 1 long fibre Cytochrom_C_2 PF01322.20 gi|55376532|ref|YP_134384.1| - 0.13 13.1 0.1 0.18 12.7 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C' Lar_restr_allev PF14354.6 gi|55376533|ref|YP_134385.1| - 0.033 14.6 0.9 0.082 13.3 0.7 1.7 2 0 0 2 2 2 0 Restriction alleviation protein Lar RNA_POL_M_15KD PF02150.16 gi|55376533|ref|YP_134385.1| - 0.28 11.1 4.4 1.8 8.5 4.4 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.10 gi|55376533|ref|YP_134385.1| - 0.28 11.0 1.7 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|55376533|ref|YP_134385.1| - 0.57 10.1 0.1 0.57 10.1 0.1 2.5 3 0 0 3 3 3 0 SprT-like zinc ribbon domain DUF3797 PF12677.7 gi|55376533|ref|YP_134385.1| - 0.69 9.9 5.4 1.1 9.2 0.4 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) zf_C2H2_10 PF18414.1 gi|55376533|ref|YP_134385.1| - 2.6 7.6 5.9 1.8 8.2 0.3 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger GFA PF04828.14 gi|55376534|ref|YP_134386.1| - 0.0094 16.3 1.1 0.3 11.5 0.1 2.2 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DUF2318 PF10080.9 gi|55376534|ref|YP_134386.1| - 0.016 15.3 0.1 0.021 14.9 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Nudix_N_2 PF14803.6 gi|55376534|ref|YP_134386.1| - 0.02 14.8 2.3 2.4 8.2 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal DZR PF12773.7 gi|55376534|ref|YP_134386.1| - 0.032 14.3 0.6 0.052 13.6 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon RPA_interact_C PF14768.6 gi|55376534|ref|YP_134386.1| - 0.046 14.3 0.3 0.059 13.9 0.3 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zinc_ribbon_2 PF13240.6 gi|55376534|ref|YP_134386.1| - 0.048 13.4 0.9 6.6 6.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|55376534|ref|YP_134386.1| - 0.14 11.9 1.3 0.39 10.5 0.1 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|55376534|ref|YP_134386.1| - 0.2 11.7 4.2 0.9 9.6 0.5 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1272 PF06906.11 gi|55376534|ref|YP_134386.1| - 0.26 11.4 2.4 5.9 7.1 0.2 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) MarR_2 PF12802.7 gi|55376536|ref|YP_134388.1| - 4.2e-11 42.6 2.2 2.5e-05 24.1 0.5 2.8 3 0 0 3 3 2 2 MarR family HTH_20 PF12840.7 gi|55376536|ref|YP_134388.1| - 4.5e-11 42.6 1.5 2e-05 24.5 0.2 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_27 PF13463.6 gi|55376536|ref|YP_134388.1| - 1.5e-08 35.0 0.2 0.00034 21.1 0.1 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|55376536|ref|YP_134388.1| - 4.3e-07 29.8 0.1 0.01 15.8 0.0 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|55376536|ref|YP_134388.1| - 5.8e-07 29.3 0.0 0.0015 18.3 0.0 3.0 3 1 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|55376536|ref|YP_134388.1| - 3.6e-06 26.5 0.3 0.49 10.1 0.0 3.5 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|55376536|ref|YP_134388.1| - 1e-05 25.2 6.6 0.001 18.8 1.1 2.9 3 0 0 3 3 3 2 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|55376536|ref|YP_134388.1| - 1.4e-05 25.0 0.2 0.00086 19.3 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn helix Rrf2 PF02082.20 gi|55376536|ref|YP_134388.1| - 2.7e-05 24.4 0.0 0.0051 17.1 0.0 2.6 2 0 0 2 2 2 1 Transcriptional regulator HTH_24 PF13412.6 gi|55376536|ref|YP_134388.1| - 4.7e-05 22.9 0.0 0.24 11.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|55376536|ref|YP_134388.1| - 0.00017 21.7 0.1 0.036 14.2 0.0 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|55376536|ref|YP_134388.1| - 0.00038 20.5 0.3 0.14 12.2 0.0 2.9 3 0 0 3 3 3 1 Sigma-70 region 3 MarR PF01047.22 gi|55376536|ref|YP_134388.1| - 0.0034 17.3 0.0 0.54 10.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.12 gi|55376536|ref|YP_134388.1| - 0.0036 17.1 0.0 0.41 10.5 0.0 2.7 2 0 0 2 2 2 1 HTH DNA binding domain DUF1441 PF07278.11 gi|55376536|ref|YP_134388.1| - 0.0099 15.8 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1441) HTH_5 PF01022.20 gi|55376536|ref|YP_134388.1| - 0.014 15.2 0.0 0.2 11.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Dimerisation2 PF16864.5 gi|55376536|ref|YP_134388.1| - 0.019 15.0 0.0 0.78 9.8 0.0 2.3 2 0 0 2 2 2 0 Dimerisation domain HTH_11 PF08279.12 gi|55376536|ref|YP_134388.1| - 0.034 14.1 0.0 0.91 9.5 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.6 gi|55376536|ref|YP_134388.1| - 0.042 13.7 0.1 5.9 6.8 0.0 2.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|55376536|ref|YP_134388.1| - 0.052 13.4 0.2 15 5.6 0.0 2.8 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|55376536|ref|YP_134388.1| - 0.064 12.8 0.0 1 8.9 0.0 2.7 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2250 PF10007.9 gi|55376536|ref|YP_134388.1| - 0.064 13.4 0.0 3.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_47 PF16221.5 gi|55376536|ref|YP_134388.1| - 0.096 12.3 0.0 19 4.9 0.0 2.5 2 0 0 2 2 2 0 winged helix-turn-helix HTH_15 PF12324.8 gi|55376536|ref|YP_134388.1| - 0.099 12.6 0.3 1.2 9.1 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase HTH_CodY PF08222.11 gi|55376536|ref|YP_134388.1| - 0.17 11.4 0.0 0.65 9.6 0.0 1.8 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_AraC PF00165.23 gi|55376536|ref|YP_134388.1| - 0.17 12.0 0.0 28 5.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family Mrr_cat PF04471.12 gi|55376537|ref|YP_134389.1| - 2.5e-27 95.2 0.0 4.9e-27 94.2 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease DZR PF12773.7 gi|55376537|ref|YP_134389.1| - 0.0048 16.9 0.2 0.0048 16.9 0.2 1.9 2 0 0 2 2 2 1 Double zinc ribbon Mrr_cat_2 PF13156.6 gi|55376537|ref|YP_134389.1| - 0.0052 16.7 0.0 0.0096 15.8 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease zinc_ribbon_15 PF17032.5 gi|55376537|ref|YP_134389.1| - 0.046 14.5 0.3 0.046 14.5 0.3 1.8 2 0 0 2 2 2 0 zinc-ribbon family NOB1_Zn_bind PF08772.11 gi|55376537|ref|YP_134389.1| - 0.17 12.0 1.8 0.41 10.8 1.8 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|55376537|ref|YP_134389.1| - 0.37 10.6 5.8 0.11 12.3 2.5 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|55376537|ref|YP_134389.1| - 0.77 9.3 4.6 2.2 7.8 4.6 1.8 1 0 0 1 1 1 0 zinc-ribbon domain zf-RING_5 PF14634.6 gi|55376537|ref|YP_134389.1| - 2.1 8.4 8.1 25 4.9 7.1 2.4 2 0 0 2 2 2 0 zinc-RING finger domain DUF2059 PF09832.9 gi|55376544|ref|YP_134396.1| - 0.015 15.3 0.2 2.2 8.4 0.0 3.1 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2059) DUF993 PF06187.11 gi|55376545|ref|YP_134397.1| - 0.0048 15.8 0.0 0.0076 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF993) AhpC-TSA PF00578.21 gi|55376546|ref|YP_134398.1| - 4.3e-28 97.7 0.0 7.1e-28 97.0 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|55376546|ref|YP_134398.1| - 2.3e-14 53.4 0.0 2.7e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|55376546|ref|YP_134398.1| - 0.0048 16.5 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HxlR PF01638.17 gi|55376547|ref|YP_134399.1| - 1.3e-17 63.5 0.0 1.4e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.22 gi|55376547|ref|YP_134399.1| - 6.3e-05 22.8 0.1 0.00013 21.8 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.6 gi|55376547|ref|YP_134399.1| - 0.00024 21.2 0.0 0.00032 20.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|55376547|ref|YP_134399.1| - 0.00024 20.9 0.0 0.00038 20.3 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|55376547|ref|YP_134399.1| - 0.00043 20.2 0.0 0.00063 19.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|55376547|ref|YP_134399.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|55376547|ref|YP_134399.1| - 0.036 14.2 0.0 0.04 14.0 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family LexA_DNA_bind PF01726.16 gi|55376547|ref|YP_134399.1| - 0.12 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.6 gi|55376547|ref|YP_134399.1| - 0.16 12.5 0.0 0.2 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|55376547|ref|YP_134399.1| - 0.17 11.7 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Pyr_redox_2 PF07992.14 gi|55376548|ref|YP_134400.1| - 2.2e-60 204.4 1.4 3.7e-60 203.6 1.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|55376548|ref|YP_134400.1| - 3.9e-31 107.6 1.0 6.8e-31 106.8 1.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|55376548|ref|YP_134400.1| - 5.7e-16 58.8 0.8 2.4e-15 56.9 0.2 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|55376548|ref|YP_134400.1| - 0.00013 21.5 0.5 0.00043 19.7 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|55376548|ref|YP_134400.1| - 0.00076 18.7 1.4 0.0061 15.7 1.4 2.1 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|55376548|ref|YP_134400.1| - 0.0024 17.0 3.5 0.011 14.8 2.2 2.5 2 1 0 2 2 2 1 Glucose inhibited division protein A Multi_ubiq PF14452.6 gi|55376548|ref|YP_134400.1| - 0.012 15.9 2.6 0.047 14.0 0.2 2.6 2 0 0 2 2 2 0 Multiubiquitin 3HCDH_N PF02737.18 gi|55376548|ref|YP_134400.1| - 0.043 13.7 1.0 0.071 13.0 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|55376548|ref|YP_134400.1| - 0.18 12.0 1.2 11 6.3 0.3 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NikR_C PF08753.11 gi|55376549|ref|YP_134401.1| - 7.8e-17 61.2 1.7 1.3e-16 60.5 1.7 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|55376549|ref|YP_134401.1| - 9.5e-06 25.4 0.5 9.5e-06 25.4 0.5 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|55376549|ref|YP_134401.1| - 0.046 13.6 0.1 0.13 12.2 0.1 1.8 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB GAT PF03127.14 gi|55376549|ref|YP_134401.1| - 0.14 12.4 0.6 18 5.7 0.1 2.4 1 1 1 2 2 2 0 GAT domain NicO PF03824.16 gi|55376550|ref|YP_134402.1| - 2.8e-06 26.9 1.2 2.8e-06 26.9 1.2 1.9 2 0 0 2 2 2 1 High-affinity nickel-transport protein HTH_20 PF12840.7 gi|55376551|ref|YP_134403.1| - 5.1e-11 42.5 0.6 5.1e-11 42.5 0.6 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55376551|ref|YP_134403.1| - 3.5e-07 30.0 0.1 1.5e-06 27.9 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family Nop16 PF09420.10 gi|55376551|ref|YP_134403.1| - 5.5e-05 23.3 0.5 8.5e-05 22.7 0.5 1.2 1 0 0 1 1 1 1 Ribosome biogenesis protein Nop16 HTH_12 PF08461.10 gi|55376551|ref|YP_134403.1| - 0.00031 20.6 1.4 0.00056 19.8 0.4 2.0 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain PadR PF03551.14 gi|55376551|ref|YP_134403.1| - 0.00054 19.9 0.7 0.0024 17.8 0.3 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|55376551|ref|YP_134403.1| - 0.00084 19.5 0.2 0.0016 18.6 0.2 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family TFIIE_alpha PF02002.17 gi|55376551|ref|YP_134403.1| - 0.0017 18.2 0.6 0.0094 15.8 0.1 2.1 2 0 0 2 2 2 1 TFIIE alpha subunit Penicillinase_R PF03965.16 gi|55376551|ref|YP_134403.1| - 0.0076 16.6 0.1 0.02 15.2 0.1 1.8 2 0 0 2 2 2 1 Penicillinase repressor Cor1 PF04803.12 gi|55376551|ref|YP_134403.1| - 0.022 15.0 0.0 0.03 14.5 0.0 1.2 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Type2_restr_D3 PF16902.5 gi|55376551|ref|YP_134403.1| - 0.035 14.0 1.3 0.054 13.4 0.5 1.7 2 0 0 2 2 2 0 Type-2 restriction enzyme D3 domain ArsR PF09824.9 gi|55376551|ref|YP_134403.1| - 0.035 13.7 0.1 0.081 12.5 0.1 1.5 1 1 0 1 1 1 0 ArsR transcriptional regulator TrmB PF01978.19 gi|55376551|ref|YP_134403.1| - 0.044 13.7 0.2 0.31 10.9 0.1 2.4 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HU-DNA_bdg PF14848.6 gi|55376551|ref|YP_134403.1| - 0.054 13.5 0.6 0.095 12.7 0.6 1.3 1 0 0 1 1 1 0 DNA-binding domain Ham1p_like PF01725.16 gi|55376551|ref|YP_134403.1| - 0.055 13.4 0.4 0.074 13.0 0.4 1.3 1 0 0 1 1 1 0 Ham1 family Histone_HNS PF00816.21 gi|55376551|ref|YP_134403.1| - 0.79 10.6 3.5 1.2 10.0 1.0 2.1 1 1 1 2 2 2 0 H-NS histone family E1-E2_ATPase PF00122.20 gi|55376552|ref|YP_134404.1| - 2.5e-50 170.5 0.0 6.5e-50 169.2 0.0 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|55376552|ref|YP_134404.1| - 5.4e-40 137.9 5.5 1e-39 137.0 5.5 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|55376552|ref|YP_134404.1| - 6.5e-11 42.5 0.8 1.4e-10 41.4 0.1 2.0 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|55376552|ref|YP_134404.1| - 1e-06 28.7 0.7 0.00034 20.4 0.6 2.4 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|55376552|ref|YP_134404.1| - 0.022 15.2 0.1 0.12 12.7 0.1 2.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase ProQ_C PF17516.2 gi|55376552|ref|YP_134404.1| - 0.12 11.8 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 ProQ C-terminal domain HMA PF00403.26 gi|55376553|ref|YP_134405.1| - 2.7e-11 43.7 1.1 2.9e-11 43.7 0.4 1.4 2 0 0 2 2 2 1 Heavy-metal-associated domain TusA PF01206.17 gi|55376553|ref|YP_134405.1| - 0.014 15.2 0.1 0.029 14.2 0.0 1.6 2 0 0 2 2 2 0 Sulfurtransferase TusA Fer2_BFD PF04324.15 gi|55376553|ref|YP_134405.1| - 0.08 13.3 1.8 5 7.6 0.3 2.6 2 1 0 2 2 2 0 BFD-like [2Fe-2S] binding domain ACP53EA PF06313.11 gi|55376554|ref|YP_134406.1| - 0.019 15.1 0.0 0.032 14.4 0.0 1.3 1 1 0 1 1 1 0 Drosophila ACP53EA protein Peptidase_M78 PF06114.13 gi|55376556|ref|YP_134408.1| - 0.0038 17.2 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 IrrE N-terminal-like domain DUF2268 PF10026.9 gi|55376556|ref|YP_134408.1| - 0.0096 15.5 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 1 Predicted Zn-dependent protease (DUF2268) SprT-like PF10263.9 gi|55376556|ref|YP_134408.1| - 0.023 14.5 0.2 0.079 12.8 0.1 1.8 2 0 0 2 2 2 0 SprT-like family Aminopep PF10023.9 gi|55376556|ref|YP_134408.1| - 0.056 12.8 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative aminopeptidase SWIM PF04434.17 gi|55376557|ref|YP_134409.1| - 0.0067 16.1 0.1 0.016 14.8 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger CBS PF00571.28 gi|55376558|ref|YP_134410.1| - 5.3e-15 55.6 1.0 1.1e-08 35.4 0.1 2.6 2 0 0 2 2 2 2 CBS domain UDPG_MGDP_dh_N PF03721.14 gi|55376558|ref|YP_134410.1| - 0.17 11.4 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ARL6IP6 PF15062.6 gi|55376560|ref|YP_134412.1| - 0.03 14.4 0.0 0.083 13.0 0.0 1.8 1 0 0 1 1 1 0 Haemopoietic lineage transmembrane helix SlyX PF04102.12 gi|55376561|ref|YP_134413.1| - 0.0031 18.1 0.2 0.0067 17.0 0.1 1.5 2 0 0 2 2 2 1 SlyX HTH_20 PF12840.7 gi|55376562|ref|YP_134414.1| - 2.1e-05 24.5 0.0 3.9e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|55376562|ref|YP_134414.1| - 0.00021 21.1 0.0 0.00051 19.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|55376562|ref|YP_134414.1| - 0.042 13.7 0.1 0.091 12.7 0.1 1.6 1 0 0 1 1 1 0 MarR family DpnI_C PF17726.1 gi|55376562|ref|YP_134414.1| - 0.077 13.1 0.4 0.26 11.4 0.0 2.1 3 0 0 3 3 3 0 Dam-replacing HTH domain HTH_24 PF13412.6 gi|55376562|ref|YP_134414.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|55376562|ref|YP_134414.1| - 0.11 12.2 0.1 0.33 10.7 0.1 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1843 PF08898.10 gi|55376563|ref|YP_134415.1| - 0.052 14.1 0.3 0.1 13.1 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1843) Cdc6_C PF09079.11 gi|55376564|ref|YP_134416.1| - 1.1e-13 50.9 0.0 2.5e-13 49.8 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|55376564|ref|YP_134416.1| - 8.8e-12 45.5 0.0 3.5e-11 43.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|55376564|ref|YP_134416.1| - 5.8e-08 33.3 0.1 6.2e-07 30.0 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|55376564|ref|YP_134416.1| - 8.3e-06 26.3 0.0 3.3e-05 24.3 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|55376564|ref|YP_134416.1| - 0.004 16.4 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|55376564|ref|YP_134416.1| - 0.005 16.8 0.0 0.41 10.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|55376564|ref|YP_134416.1| - 0.0055 16.4 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|55376564|ref|YP_134416.1| - 0.024 14.1 0.0 0.07 12.5 0.0 1.8 1 1 0 1 1 1 0 Bacterial TniB protein ResIII PF04851.15 gi|55376564|ref|YP_134416.1| - 0.043 13.8 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RuvB_N PF05496.12 gi|55376564|ref|YP_134416.1| - 0.048 13.4 0.0 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|55376564|ref|YP_134416.1| - 0.065 13.6 0.0 0.29 11.5 0.0 2.2 2 0 0 2 2 1 0 RNA helicase NACHT PF05729.12 gi|55376564|ref|YP_134416.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase_C PF13335.6 gi|55376564|ref|YP_134416.1| - 0.1 13.2 0.1 0.27 11.9 0.1 1.7 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI C-terminal TsaE PF02367.17 gi|55376564|ref|YP_134416.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|55376564|ref|YP_134416.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Torsin PF06309.11 gi|55376564|ref|YP_134416.1| - 0.21 11.7 0.0 0.46 10.6 0.0 1.5 1 0 0 1 1 1 0 Torsin AAA_19 PF13245.6 gi|55376564|ref|YP_134416.1| - 0.48 10.7 1.6 1.1 9.6 0.1 2.3 2 1 0 2 2 2 0 AAA domain DNA_pol_B PF00136.21 gi|55376565|ref|YP_134417.1| - 1.6e-27 96.3 0.0 3.8e-27 95.1 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B Laminin_I PF06008.14 gi|55376567|ref|YP_134419.1| - 0.013 15.2 3.5 0.016 14.9 3.5 1.2 1 0 0 1 1 1 0 Laminin Domain I CorA PF01544.18 gi|55376567|ref|YP_134419.1| - 0.017 14.4 2.1 0.02 14.2 2.1 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Sugarporin_N PF11471.8 gi|55376567|ref|YP_134419.1| - 0.07 13.1 3.0 0.07 13.1 3.0 1.9 2 1 0 2 2 2 0 Maltoporin periplasmic N-terminal extension XhlA PF10779.9 gi|55376567|ref|YP_134419.1| - 0.12 12.6 1.5 0.22 11.8 1.5 1.4 1 0 0 1 1 1 0 Haemolysin XhlA HXXSHH PF07586.11 gi|55376567|ref|YP_134419.1| - 0.17 11.4 2.9 0.97 9.0 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1552) PSK_trans_fac PF07704.11 gi|55376567|ref|YP_134419.1| - 0.7 10.7 9.1 1.9 9.3 0.5 2.1 1 1 1 2 2 2 0 Rv0623-like transcription factor Herpes_UL14 PF03580.14 gi|55376567|ref|YP_134419.1| - 1.3 9.3 6.7 5 7.4 3.2 2.2 1 1 1 2 2 2 0 Herpesvirus UL14-like protein Rad51 PF08423.11 gi|55376568|ref|YP_134420.1| - 0.076 12.3 0.0 0.29 10.4 0.0 1.8 1 1 0 1 1 1 0 Rad51 EMC3_TMCO1 PF01956.16 gi|55376570|ref|YP_134422.1| - 0.0029 17.4 1.4 0.64 9.7 0.0 2.4 2 0 0 2 2 2 1 Integral membrane protein EMC3/TMCO1-like TMF_TATA_bd PF12325.8 gi|55376570|ref|YP_134422.1| - 0.017 15.3 3.1 0.017 15.3 3.1 3.2 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding Osmo_CC PF08946.10 gi|55376570|ref|YP_134422.1| - 0.02 15.1 0.5 0.02 15.1 0.5 6.0 6 2 1 7 7 7 0 Osmosensory transporter coiled coil DivIC PF04977.15 gi|55376570|ref|YP_134422.1| - 0.025 14.3 20.3 0.035 13.9 0.9 3.9 4 0 0 4 4 4 0 Septum formation initiator SOGA PF11365.8 gi|55376570|ref|YP_134422.1| - 0.065 14.4 15.7 0.36 12.0 1.8 3.2 3 1 0 3 3 2 0 Protein SOGA VAPB_antitox PF02697.14 gi|55376570|ref|YP_134422.1| - 0.069 13.9 1.0 0.069 13.9 1.0 3.4 4 0 0 4 4 4 0 Putative antitoxin DUF1664 PF07889.12 gi|55376570|ref|YP_134422.1| - 0.19 11.8 7.0 3.1 7.9 0.9 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DUF1612 PF07756.12 gi|55376570|ref|YP_134422.1| - 0.19 12.0 2.1 2.3 8.5 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1612) ZapA PF05164.13 gi|55376570|ref|YP_134422.1| - 1.5 9.3 9.1 12 6.4 1.8 3.3 3 1 0 3 3 3 0 Cell division protein ZapA PIEZO PF15917.5 gi|55376570|ref|YP_134422.1| - 2 7.9 13.9 0.14 11.6 3.5 2.6 2 1 0 2 2 2 0 Piezo FapA PF03961.13 gi|55376570|ref|YP_134422.1| - 6.3 5.3 15.7 1.7 7.2 1.0 2.5 2 1 1 3 3 3 0 Flagellar Assembly Protein A Swi5 PF07061.11 gi|55376570|ref|YP_134422.1| - 7.4 6.7 13.6 3.1 7.9 2.5 3.9 4 0 0 4 4 4 0 Swi5 VIT1 PF01988.19 gi|55376570|ref|YP_134422.1| - 8 6.3 10.4 5.8e+02 0.2 10.4 2.6 1 1 0 1 1 1 0 VIT family DUF4140 PF13600.6 gi|55376570|ref|YP_134422.1| - 10 6.7 23.6 0.38 11.2 1.8 4.1 3 1 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) UxaC PF02614.14 gi|55376571|ref|YP_134423.1| - 0.044 12.7 0.1 0.05 12.5 0.1 1.1 1 0 0 1 1 1 0 Glucuronate isomerase AATF-Che1 PF13339.6 gi|55376571|ref|YP_134423.1| - 0.21 12.3 7.1 0.074 13.7 3.2 1.9 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Peptidase_S49_N PF08496.10 gi|55376571|ref|YP_134423.1| - 1.6 8.8 7.1 0.48 10.5 4.3 1.5 2 0 0 2 2 2 0 Peptidase family S49 N-terminal Med30 PF11315.8 gi|55376571|ref|YP_134423.1| - 5.2 7.3 8.6 1.9 8.7 5.2 1.9 2 1 0 2 2 2 0 Mediator complex subunit 30 Phage_Gp23 PF10669.9 gi|55376571|ref|YP_134423.1| - 6.2 7.2 9.9 8.8 6.7 4.7 2.2 2 0 0 2 2 2 0 Protein gp23 (Bacteriophage A118) SRAP PF02586.14 gi|55376572|ref|YP_134424.1| - 3e-62 210.0 0.0 3.4e-62 209.8 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) AAA_16 PF13191.6 gi|55376573|ref|YP_134425.1| - 6.4e-10 39.7 1.9 8e-09 36.1 0.2 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55376573|ref|YP_134425.1| - 2.1e-09 37.7 0.0 9.1e-09 35.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|55376573|ref|YP_134425.1| - 3.8e-07 30.3 3.7 0.00058 20.2 1.1 2.6 2 0 0 2 2 2 2 AAA C-terminal domain AAA_18 PF13238.6 gi|55376573|ref|YP_134425.1| - 1.9e-05 25.2 0.1 8.9e-05 23.0 0.0 2.1 1 1 2 3 3 3 1 AAA domain Penicillinase_R PF03965.16 gi|55376573|ref|YP_134425.1| - 2.3e-05 24.7 0.0 5.5e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Penicillinase repressor AAA_5 PF07728.14 gi|55376573|ref|YP_134425.1| - 0.00014 21.8 0.0 0.00062 19.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|55376573|ref|YP_134425.1| - 0.00035 20.5 0.5 0.01 15.7 0.0 2.8 2 1 1 3 3 3 1 NTPase AAA PF00004.29 gi|55376573|ref|YP_134425.1| - 0.00083 19.8 0.0 0.011 16.1 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|55376573|ref|YP_134425.1| - 0.0048 17.1 0.5 0.47 10.6 0.0 3.0 2 2 1 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|55376573|ref|YP_134425.1| - 0.0053 16.0 0.0 0.011 14.9 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.6 gi|55376573|ref|YP_134425.1| - 0.0073 16.3 0.0 0.018 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|55376573|ref|YP_134425.1| - 0.0095 15.9 0.3 0.041 13.9 0.2 2.2 2 1 0 2 2 1 1 CDC6, C terminal winged helix domain DUF4194 PF13835.6 gi|55376573|ref|YP_134425.1| - 0.012 15.4 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) DUF2075 PF09848.9 gi|55376573|ref|YP_134425.1| - 0.014 14.7 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|55376573|ref|YP_134425.1| - 0.015 15.2 0.0 0.1 12.5 0.0 2.1 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea PRK PF00485.18 gi|55376573|ref|YP_134425.1| - 0.018 14.8 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|55376573|ref|YP_134425.1| - 0.031 14.2 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF2791 PF10923.8 gi|55376573|ref|YP_134425.1| - 0.046 12.6 0.0 0.078 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) RNA_helicase PF00910.22 gi|55376573|ref|YP_134425.1| - 0.052 13.9 0.0 0.15 12.5 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|55376573|ref|YP_134425.1| - 0.069 12.9 0.6 0.22 11.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|55376573|ref|YP_134425.1| - 0.076 12.8 0.0 0.2 11.4 0.0 1.9 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|55376573|ref|YP_134425.1| - 0.078 12.7 0.4 3.3 7.4 0.4 2.6 1 1 0 1 1 1 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|55376573|ref|YP_134425.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Bac_DnaA PF00308.18 gi|55376573|ref|YP_134425.1| - 0.16 11.8 0.0 1.6 8.5 0.0 2.2 2 1 0 2 2 2 0 Bacterial dnaA protein Helicase_C PF00271.31 gi|55376574|ref|YP_134426.1| - 7.3e-18 64.9 0.0 1.9e-17 63.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|55376574|ref|YP_134426.1| - 4.4e-12 45.4 0.0 8.6e-12 44.4 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|55376574|ref|YP_134426.1| - 9.8e-07 28.9 0.0 1.2e-05 25.3 0.0 2.6 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit PLDc_2 PF13091.6 gi|55376574|ref|YP_134426.1| - 6e-05 22.9 0.0 0.00014 21.7 0.0 1.7 1 0 0 1 1 1 1 PLD-like domain DUF1664 PF07889.12 gi|55376574|ref|YP_134426.1| - 0.014 15.4 3.6 0.3 11.2 0.3 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF1664) CMD PF02627.20 gi|55376574|ref|YP_134426.1| - 0.05 13.7 0.1 0.12 12.4 0.1 1.7 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family Phage_sheath_1C PF17482.2 gi|55376574|ref|YP_134426.1| - 0.053 13.5 0.2 5.2 7.1 0.0 2.8 2 0 0 2 2 2 0 Phage tail sheath C-terminal domain DUF2852 PF11014.8 gi|55376574|ref|YP_134426.1| - 0.065 13.4 0.1 0.18 12.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2852) FlgN PF05130.12 gi|55376574|ref|YP_134426.1| - 0.15 12.6 3.5 0.25 11.8 0.5 2.9 3 0 0 3 3 3 0 FlgN protein DUF3829 PF12889.7 gi|55376574|ref|YP_134426.1| - 0.16 11.4 1.0 0.41 10.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3829) T3SSipB PF16535.5 gi|55376574|ref|YP_134426.1| - 0.31 11.5 5.5 16 5.9 0.0 3.4 3 0 0 3 3 3 0 Type III cell invasion protein SipB DUF4618 PF15397.6 gi|55376574|ref|YP_134426.1| - 0.47 9.8 4.0 0.35 10.3 1.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) CENP-Q PF13094.6 gi|55376574|ref|YP_134426.1| - 1.5 9.0 7.4 0.1 12.8 1.5 2.0 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit LUC7 PF03194.15 gi|55376574|ref|YP_134426.1| - 1.5 8.4 5.2 0.24 11.0 0.7 1.9 2 0 0 2 2 2 0 LUC7 N_terminus DUF883 PF05957.13 gi|55376574|ref|YP_134426.1| - 1.9 9.2 12.8 1 10.0 0.4 4.2 4 1 0 4 4 3 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.18 gi|55376574|ref|YP_134426.1| - 1.9 8.3 17.2 0.026 14.4 5.2 3.1 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain FUSC PF04632.12 gi|55376574|ref|YP_134426.1| - 2.2 6.7 3.4 7 5.1 3.4 1.8 1 0 0 1 1 1 0 Fusaric acid resistance protein family DivIC PF04977.15 gi|55376574|ref|YP_134426.1| - 4.3 7.2 7.4 1 9.2 0.1 3.4 3 1 0 3 3 3 0 Septum formation initiator HIP1_clath_bdg PF16515.5 gi|55376574|ref|YP_134426.1| - 8.2 7.1 15.4 2.3 8.9 0.4 3.8 3 1 1 4 4 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Osmo_CC PF08946.10 gi|55376574|ref|YP_134426.1| - 9.2 6.6 6.6 39 4.6 0.2 4.3 4 0 0 4 4 3 0 Osmosensory transporter coiled coil DUF1156 PF06634.12 gi|55376575|ref|YP_134427.1| - 4e-07 30.0 0.2 3e-06 27.2 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) N6_N4_Mtase PF01555.18 gi|55376575|ref|YP_134427.1| - 0.00092 19.0 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 DNA methylase DUF499 PF04465.12 gi|55376577|ref|YP_134429.1| - 1.2e-37 129.3 0.0 1.7e-35 122.2 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF499) DUF4407 PF14362.6 gi|55376577|ref|YP_134429.1| - 0.079 12.3 0.3 13 5.0 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) AAA PF00004.29 gi|55376577|ref|YP_134429.1| - 0.17 12.3 0.0 0.56 10.6 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma70_ner PF04546.13 gi|55376577|ref|YP_134429.1| - 0.21 11.4 5.1 0.12 12.3 2.0 2.1 2 0 0 2 2 2 0 Sigma-70, non-essential region VAPB_antitox PF02697.14 gi|55376578|ref|YP_134430.1| - 0.011 16.5 0.4 0.013 16.3 0.4 1.1 1 0 0 1 1 1 0 Putative antitoxin # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006394.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006394.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006394.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006394.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:17:26 2019 # [ok]