#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
MacB_PCD	PF12704.2	gi|55376281|ref|YP_134134.1|	-	1e-28	100.4	1.7	1e-28	100.4	1.2	2.2	2	1	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|55376281|ref|YP_134134.1|	-	3e-23	81.8	7.6	3e-21	75.3	3.3	2.1	2	0	0	2	2	2	2	FtsX-like	permease	family
TFR_dimer	PF04253.10	gi|55376281|ref|YP_134134.1|	-	0.12	11.9	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	Transferrin	receptor-like	dimerisation	domain
Romo1	PF10247.4	gi|55376281|ref|YP_134134.1|	-	4	7.7	6.9	5.2	7.3	2.2	2.7	3	0	0	3	3	3	0	Reactive	mitochondrial	oxygen	species	modulator	1
ABC_tran	PF00005.22	gi|55376282|ref|YP_134135.1|	-	3e-34	118.2	0.0	3.9e-34	117.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|55376282|ref|YP_134135.1|	-	8.1e-12	45.7	0.1	1.2e-07	32.0	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|55376282|ref|YP_134135.1|	-	1.7e-06	28.1	0.5	1.2e-05	25.3	0.3	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|55376282|ref|YP_134135.1|	-	4.1e-05	23.0	1.5	0.023	14.0	0.1	2.5	3	0	0	3	3	3	2	AAA	domain
AAA_29	PF13555.1	gi|55376282|ref|YP_134135.1|	-	0.00059	19.3	0.1	0.0013	18.2	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|55376282|ref|YP_134135.1|	-	0.0011	18.9	0.9	0.0027	17.6	0.6	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|55376282|ref|YP_134135.1|	-	0.0013	17.9	0.1	0.002	17.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|55376282|ref|YP_134135.1|	-	0.0022	17.2	0.0	0.67	9.1	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.1	gi|55376282|ref|YP_134135.1|	-	0.0054	16.6	0.6	0.016	15.0	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|55376282|ref|YP_134135.1|	-	0.0062	16.0	0.2	0.068	12.6	0.1	2.2	2	0	0	2	2	2	1	AAA-like	domain
TIR-like	PF10137.4	gi|55376282|ref|YP_134135.1|	-	0.0074	15.9	0.0	0.06	12.9	0.0	2.1	2	0	0	2	2	2	1	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
cobW	PF02492.14	gi|55376282|ref|YP_134135.1|	-	0.015	14.7	0.4	0.029	13.8	0.3	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SE	PF00437.15	gi|55376282|ref|YP_134135.1|	-	0.022	13.6	0.1	0.031	13.1	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_15	PF13175.1	gi|55376282|ref|YP_134135.1|	-	0.023	13.7	0.0	2.6	6.9	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_23	PF13476.1	gi|55376282|ref|YP_134135.1|	-	0.034	14.4	0.2	0.062	13.6	0.2	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|55376282|ref|YP_134135.1|	-	0.035	13.6	0.1	0.068	12.7	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|55376282|ref|YP_134135.1|	-	0.047	13.6	0.4	0.1	12.5	0.3	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|55376282|ref|YP_134135.1|	-	0.062	14.1	2.0	0.11	13.3	1.4	1.9	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|55376282|ref|YP_134135.1|	-	0.068	12.5	0.0	0.11	11.8	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|55376282|ref|YP_134135.1|	-	0.07	12.7	0.1	0.13	11.9	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
MMR_HSR1	PF01926.18	gi|55376282|ref|YP_134135.1|	-	0.07	13.0	1.3	0.28	11.1	0.9	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.1	gi|55376282|ref|YP_134135.1|	-	0.074	12.6	0.4	0.22	11.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|55376282|ref|YP_134135.1|	-	0.089	12.7	0.0	1.1	9.2	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_14	PF13173.1	gi|55376282|ref|YP_134135.1|	-	0.092	12.6	0.1	0.21	11.4	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Arch_ATPase	PF01637.13	gi|55376282|ref|YP_134135.1|	-	0.093	12.4	0.0	0.25	11.0	0.0	1.6	2	0	0	2	2	2	0	Archaeal	ATPase
RNA_helicase	PF00910.17	gi|55376282|ref|YP_134135.1|	-	0.11	12.6	0.1	1.4	9.1	0.0	2.3	2	1	1	3	3	3	0	RNA	helicase
MobB	PF03205.9	gi|55376282|ref|YP_134135.1|	-	0.11	12.1	0.1	0.23	11.1	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|55376282|ref|YP_134135.1|	-	0.12	11.5	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.1	gi|55376282|ref|YP_134135.1|	-	0.15	11.8	0.4	0.45	10.2	0.1	2.1	2	0	0	2	2	1	0	Part	of	AAA	domain
UPF0079	PF02367.12	gi|55376282|ref|YP_134135.1|	-	0.15	11.7	0.1	0.3	10.7	0.1	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
NB-ARC	PF00931.17	gi|55376282|ref|YP_134135.1|	-	0.17	10.6	0.1	0.27	10.0	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|55376282|ref|YP_134135.1|	-	0.39	11.0	5.7	0.22	11.8	0.9	2.4	1	1	0	2	2	2	0	AAA	domain
Transglut_C	PF00927.17	gi|55376283|ref|YP_134136.1|	-	0.00027	20.9	1.1	0.0063	16.5	0.1	2.7	2	1	0	2	2	2	1	Transglutaminase	family,	C-terminal	ig	like	domain
CARDB	PF07705.6	gi|55376283|ref|YP_134136.1|	-	0.0052	16.8	13.9	0.25	11.4	0.4	3.6	3	1	1	4	4	4	2	CARDB
DUF3707	PF12499.3	gi|55376283|ref|YP_134136.1|	-	0.21	11.9	1.7	0.42	10.9	0.6	2.0	2	1	0	2	2	2	0	Pherophorin
DUF2249	PF10006.4	gi|55376284|ref|YP_134137.1|	-	0.0034	16.9	0.2	0.0035	16.9	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DDE_Tnp_1	PF01609.16	gi|55376285|ref|YP_134138.1|	-	1.2e-07	31.4	2.2	3.5e-06	26.7	1.5	2.3	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_3	PF13358.1	gi|55376286|ref|YP_134139.1|	-	2.1e-27	95.6	0.0	2.4e-27	95.4	0.0	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.21	gi|55376286|ref|YP_134139.1|	-	0.00019	21.4	0.0	0.00023	21.2	0.0	1.2	1	0	0	1	1	1	1	Integrase	core	domain
NPCBM_assoc	PF10633.4	gi|55376287|ref|YP_134140.1|	-	2e-11	43.7	5.8	9e-06	25.6	0.6	3.0	2	1	0	2	2	2	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|55376287|ref|YP_134140.1|	-	2.8e-10	40.1	6.3	7.1e-06	26.0	0.2	2.3	2	0	0	2	2	2	2	CARDB
DUF11	PF01345.13	gi|55376287|ref|YP_134140.1|	-	1.9e-05	24.6	10.0	0.13	12.2	3.0	3.6	4	0	0	4	4	4	2	Domain	of	unknown	function	DUF11
Transglut_C	PF00927.17	gi|55376287|ref|YP_134140.1|	-	2.5e-05	24.2	0.3	0.053	13.5	0.0	2.5	2	0	0	2	2	2	2	Transglutaminase	family,	C-terminal	ig	like	domain
TRAP_beta	PF05753.9	gi|55376287|ref|YP_134140.1|	-	0.0002	20.5	4.8	0.078	12.1	0.2	2.5	2	1	0	2	2	2	2	Translocon-associated	protein	beta	(TRAPB)
Fn3-like	PF14310.1	gi|55376287|ref|YP_134140.1|	-	0.052	13.5	0.4	41	4.1	0.0	3.7	4	0	0	4	4	4	0	Fibronectin	type	III-like	domain
Alpha_adaptinC2	PF02883.15	gi|55376287|ref|YP_134140.1|	-	0.081	13.2	0.5	0.22	11.8	0.0	1.8	2	1	0	2	2	2	0	Adaptin	C-terminal	domain
MMPL	PF03176.10	gi|55376288|ref|YP_134141.1|	-	1.4e-34	119.3	26.4	5.5e-19	68.0	4.3	2.3	2	0	0	2	2	2	2	MMPL	family
Sterol-sensing	PF12349.3	gi|55376288|ref|YP_134141.1|	-	1.4e-09	37.6	13.3	1.9e-07	30.6	2.9	2.5	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|55376288|ref|YP_134141.1|	-	1.6e-09	36.3	20.6	2.2e-09	35.8	5.7	2.3	2	0	0	2	2	2	2	Patched	family
DDE_Tnp_1	PF01609.16	gi|55376289|ref|YP_134142.1|	-	1.1e-21	77.4	0.0	1.5e-21	76.9	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55376289|ref|YP_134142.1|	-	0.0035	17.3	0.1	0.0061	16.5	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
TrmB	PF01978.14	gi|55376290|ref|YP_134143.1|	-	2.3e-19	68.8	0.0	7.7e-19	67.1	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|55376290|ref|YP_134143.1|	-	0.035	13.7	0.0	0.096	12.2	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|55376290|ref|YP_134143.1|	-	0.049	13.2	0.1	0.12	12.1	0.0	1.6	2	0	0	2	2	2	0	MarR	family
MarR	PF01047.17	gi|55376290|ref|YP_134143.1|	-	0.14	11.8	0.1	0.4	10.4	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Claudin_2	PF13903.1	gi|55376291|ref|YP_134144.1|	-	0.054	13.1	5.4	0.1	12.3	3.7	1.4	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF461	PF04314.8	gi|55376293|ref|YP_134146.1|	-	0.028	14.0	0.1	11	5.7	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF461)
Phage_integrase	PF00589.17	gi|55376294|ref|YP_134147.1|	-	1.2e-07	31.5	0.0	2.3e-07	30.6	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
Suppressor_APC	PF11414.3	gi|55376294|ref|YP_134147.1|	-	0.047	13.4	0.0	8.6	6.2	0.0	2.4	2	0	0	2	2	2	0	Adenomatous	polyposis	coli	tumour	suppressor	protein
Phage_int_SAM_1	PF02899.12	gi|55376294|ref|YP_134147.1|	-	0.35	11.0	3.8	0.33	11.1	0.2	2.9	3	1	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
DUF772	PF05598.6	gi|55376295|ref|YP_134148.1|	-	3e-05	23.8	0.0	0.00011	22.0	0.0	2.0	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
Trehalase_Ca-bi	PF07492.6	gi|55376295|ref|YP_134148.1|	-	1.5	8.2	5.9	0.088	12.1	0.2	1.8	2	0	0	2	2	2	0	Neutral	trehalase	Ca2+	binding	domain
CbiA	PF01656.18	gi|55376296|ref|YP_134149.1|	-	2.5e-28	98.8	0.0	2.9e-28	98.6	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55376296|ref|YP_134149.1|	-	2.8e-13	50.0	0.0	5.8e-13	49.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|55376296|ref|YP_134149.1|	-	1.7e-09	37.1	0.2	8.7e-07	28.2	0.0	2.1	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|55376296|ref|YP_134149.1|	-	9.5e-06	24.8	0.1	3.6e-05	22.9	0.0	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|55376296|ref|YP_134149.1|	-	1.4e-05	24.5	0.0	4e-05	23.0	0.0	1.6	1	1	0	1	1	1	1	YhjQ	protein
Fer4_NifH	PF00142.13	gi|55376296|ref|YP_134149.1|	-	2.6e-05	23.5	0.0	0.00022	20.5	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|55376296|ref|YP_134149.1|	-	0.026	13.9	0.0	0.062	12.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|55376296|ref|YP_134149.1|	-	0.029	13.1	0.1	0.064	12.0	0.0	1.5	2	0	0	2	2	2	0	ArgK	protein
DUF4652	PF15525.1	gi|55376297|ref|YP_134150.1|	-	0.015	14.7	1.8	0.022	14.2	1.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4652)
RRN3	PF05327.6	gi|55376297|ref|YP_134150.1|	-	3.3	5.7	5.5	3.2	5.7	3.8	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
CDC45	PF02724.9	gi|55376297|ref|YP_134150.1|	-	4.3	5.2	6.3	4	5.3	4.4	1.1	1	0	0	1	1	1	0	CDC45-like	protein
DDE_Tnp_IS240	PF13610.1	gi|55376299|ref|YP_134152.1|	-	6.6e-20	71.5	0.2	9.4e-20	71.0	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.1	gi|55376299|ref|YP_134152.1|	-	4.7e-08	32.4	1.7	9.1e-08	31.5	1.2	1.5	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|55376299|ref|YP_134152.1|	-	0.00033	20.7	0.1	0.00074	19.6	0.1	1.7	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.5	gi|55376299|ref|YP_134152.1|	-	0.00077	19.2	0.8	0.22	11.4	0.0	2.6	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2384)
DDE_Tnp_IS66	PF03050.9	gi|55376299|ref|YP_134152.1|	-	0.013	14.7	0.1	0.033	13.4	0.0	1.7	1	1	0	1	1	1	0	Transposase	IS66	family
Peptidase_M41	PF01434.13	gi|55376300|ref|YP_134153.1|	-	0.13	11.6	0.0	0.19	11.1	0.0	1.1	1	0	0	1	1	1	0	Peptidase	family	M41
TrmB	PF01978.14	gi|55376301|ref|YP_134154.1|	-	1e-08	34.7	0.0	3.4e-08	33.0	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|55376301|ref|YP_134154.1|	-	0.00019	20.9	0.4	0.00097	18.6	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|55376301|ref|YP_134154.1|	-	0.015	15.3	0.0	0.028	14.4	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
MdoG	PF04349.7	gi|55376301|ref|YP_134154.1|	-	0.047	11.9	0.0	0.063	11.5	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	glucan	biosynthesis	protein,	MdoG
HTH_DeoR	PF08220.7	gi|55376301|ref|YP_134154.1|	-	0.054	13.0	0.1	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|55376301|ref|YP_134154.1|	-	0.075	12.8	0.3	0.25	11.1	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
F-112	PF09645.5	gi|55376301|ref|YP_134154.1|	-	0.15	11.9	0.0	0.26	11.2	0.0	1.4	1	0	0	1	1	1	0	F-112	protein
Mucin	PF01456.12	gi|55376302|ref|YP_134155.1|	-	0.36	10.6	9.0	0.034	13.9	2.9	1.6	2	0	0	2	2	2	0	Mucin-like	glycoprotein
DUF4404	PF14357.1	gi|55376303|ref|YP_134156.1|	-	0.07	13.5	0.3	0.17	12.3	0.2	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4404)
Cdc6_C	PF09079.6	gi|55376304|ref|YP_134157.1|	-	5.5e-23	80.5	0.6	1.8e-22	78.8	0.0	2.2	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|55376304|ref|YP_134157.1|	-	1.1e-11	45.1	0.0	2.4e-10	40.6	0.0	2.8	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|55376304|ref|YP_134157.1|	-	2.8e-10	40.4	0.0	8.2e-10	38.9	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|55376304|ref|YP_134157.1|	-	4.5e-07	30.1	0.0	1.8e-06	28.1	0.0	2.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|55376304|ref|YP_134157.1|	-	1.8e-05	24.5	0.0	3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
NACHT	PF05729.7	gi|55376304|ref|YP_134157.1|	-	0.0007	19.2	0.0	0.0013	18.4	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
NB-ARC	PF00931.17	gi|55376304|ref|YP_134157.1|	-	0.0014	17.5	0.0	0.0024	16.7	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
DUF815	PF05673.8	gi|55376304|ref|YP_134157.1|	-	0.003	16.5	0.0	0.0051	15.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_25	PF13481.1	gi|55376304|ref|YP_134157.1|	-	0.0091	15.4	0.0	0.32	10.3	0.0	2.7	3	0	0	3	3	3	1	AAA	domain
AAA_5	PF07728.9	gi|55376304|ref|YP_134157.1|	-	0.015	15.0	0.1	0.09	12.5	0.0	2.4	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|55376304|ref|YP_134157.1|	-	0.018	15.3	0.1	0.082	13.2	0.0	2.3	2	1	0	2	2	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|55376304|ref|YP_134157.1|	-	0.021	14.9	0.0	0.038	14.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Pox_D5	PF03288.11	gi|55376304|ref|YP_134157.1|	-	0.039	14.2	0.0	0.084	13.1	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
KAP_NTPase	PF07693.9	gi|55376304|ref|YP_134157.1|	-	0.07	12.1	0.0	3.7	6.4	0.0	2.2	1	1	1	2	2	2	0	KAP	family	P-loop	domain
AAA_17	PF13207.1	gi|55376304|ref|YP_134157.1|	-	0.12	13.2	2.3	0.13	13.0	0.2	2.5	2	1	0	2	2	2	0	AAA	domain
DUF972	PF06156.8	gi|55376305|ref|YP_134158.1|	-	0.00048	20.4	0.2	0.00048	20.4	0.1	2.7	3	1	0	3	3	3	1	Protein	of	unknown	function	(DUF972)
bZIP_2	PF07716.10	gi|55376305|ref|YP_134158.1|	-	0.00072	19.3	0.9	0.0017	18.1	0.6	1.7	1	0	0	1	1	1	1	Basic	region	leucine	zipper
bZIP_1	PF00170.16	gi|55376305|ref|YP_134158.1|	-	0.004	17.0	0.6	0.011	15.7	0.4	1.7	1	0	0	1	1	1	1	bZIP	transcription	factor
DASH_Spc34	PF08657.5	gi|55376305|ref|YP_134158.1|	-	0.022	14.4	0.3	0.022	14.4	0.2	2.5	3	0	0	3	3	3	0	DASH	complex	subunit	Spc34
Herpes_UL6	PF01763.11	gi|55376305|ref|YP_134158.1|	-	0.033	12.3	0.1	0.057	11.5	0.1	1.3	1	0	0	1	1	1	0	Herpesvirus	UL6	like
DivIVA	PF05103.8	gi|55376305|ref|YP_134158.1|	-	0.046	13.7	0.5	0.046	13.7	0.3	3.2	3	1	0	3	3	3	0	DivIVA	protein
TSC22	PF01166.13	gi|55376305|ref|YP_134158.1|	-	0.055	13.4	0.8	0.17	11.8	0.5	1.9	1	0	0	1	1	1	0	TSC-22/dip/bun	family
DivIC	PF04977.10	gi|55376305|ref|YP_134158.1|	-	0.075	12.5	0.6	0.16	11.4	0.4	1.5	1	0	0	1	1	1	0	Septum	formation	initiator
FlaC_arch	PF05377.6	gi|55376305|ref|YP_134158.1|	-	0.12	12.3	1.0	0.37	10.7	0.7	1.9	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
NYD-SP28_assoc	PF14775.1	gi|55376305|ref|YP_134158.1|	-	0.13	11.9	0.2	0.27	10.9	0.2	1.4	1	0	0	1	1	1	0	Sperm	tail	C-terminal	domain
IncA	PF04156.9	gi|55376305|ref|YP_134158.1|	-	0.22	11.0	1.5	0.31	10.6	0.5	1.6	2	0	0	2	2	2	0	IncA	protein
WD40_alt	PF14077.1	gi|55376305|ref|YP_134158.1|	-	3.4	7.3	5.7	3.7	7.2	2.1	2.2	1	1	1	2	2	2	0	Alternative	WD40	repeat	motif
Plasmid_stabil	PF05016.9	gi|55376309|ref|YP_134162.1|	-	6.3e-05	23.2	0.2	7.6e-05	23.0	0.1	1.1	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
HTH_32	PF13565.1	gi|55376310|ref|YP_134163.1|	-	2.4e-10	41.0	0.0	4e-10	40.3	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Tnp_Tc3_2	PF01498.13	gi|55376310|ref|YP_134163.1|	-	0.00019	21.4	0.0	0.00034	20.5	0.0	1.4	1	1	0	1	1	1	1	Transposase
HTH_33	PF13592.1	gi|55376310|ref|YP_134163.1|	-	0.00038	19.9	0.0	0.00062	19.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_DeoR	PF08220.7	gi|55376310|ref|YP_134163.1|	-	0.002	17.6	0.0	0.0047	16.4	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_12	PF08461.5	gi|55376310|ref|YP_134163.1|	-	0.017	14.8	0.0	0.058	13.1	0.0	1.9	2	1	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
HTH_29	PF13551.1	gi|55376310|ref|YP_134163.1|	-	0.022	14.9	0.0	0.032	14.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
GntR	PF00392.16	gi|55376310|ref|YP_134163.1|	-	0.057	12.8	0.0	1.7	8.1	0.0	2.7	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|55376310|ref|YP_134163.1|	-	0.069	13.1	0.0	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
PqqD	PF05402.7	gi|55376310|ref|YP_134163.1|	-	0.11	12.5	0.2	0.23	11.4	0.0	1.7	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HTH_27	PF13463.1	gi|55376313|ref|YP_134166.1|	-	0.015	15.6	0.0	0.016	15.5	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|55376313|ref|YP_134166.1|	-	0.036	13.8	0.0	0.045	13.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Mrr_N	PF14338.1	gi|55376313|ref|YP_134166.1|	-	0.044	13.8	0.0	0.07	13.2	0.0	1.4	1	1	0	1	1	1	0	Mrr	N-terminal	domain
HTH_24	PF13412.1	gi|55376313|ref|YP_134166.1|	-	0.073	12.4	0.0	0.086	12.2	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Peptidase_M64	PF09471.5	gi|55376314|ref|YP_134167.1|	-	0.00069	19.3	0.0	0.00094	18.8	0.0	1.2	1	0	0	1	1	1	1	IgA	Peptidase	M64
DDE_Tnp_IS240	PF13610.1	gi|55376316|ref|YP_134169.1|	-	2.6e-16	59.8	0.1	3.3e-16	59.5	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve	PF00665.21	gi|55376316|ref|YP_134169.1|	-	4.6e-06	26.7	0.2	7.7e-06	26.0	0.1	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.9	gi|55376316|ref|YP_134169.1|	-	0.0001	21.6	0.2	0.00027	20.2	0.1	1.8	1	1	0	1	1	1	1	Transposase	IS66	family
DDE_3	PF13358.1	gi|55376316|ref|YP_134169.1|	-	0.0014	18.4	0.0	0.0041	16.8	0.0	1.7	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_28	PF13518.1	gi|55376316|ref|YP_134169.1|	-	0.015	15.2	0.0	0.21	11.5	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
DDE_Tnp_1	PF01609.16	gi|55376317|ref|YP_134170.1|	-	5.8e-27	94.6	0.5	7.5e-27	94.2	0.3	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|55376317|ref|YP_134170.1|	-	0.039	13.6	0.0	0.65	9.7	0.0	2.2	2	0	0	2	2	2	0	Transposase	DDE	domain
DDE_Tnp_2	PF04693.7	gi|55376317|ref|YP_134170.1|	-	0.075	12.0	0.1	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.16	gi|55376318|ref|YP_134171.1|	-	5.1e-09	35.9	0.1	7.8e-09	35.3	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1989	PF09347.5	gi|55376318|ref|YP_134171.1|	-	0.07	12.5	0.2	0.14	11.5	0.1	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1989)
DUF3094	PF11293.3	gi|55376319|ref|YP_134172.1|	-	0.1	12.0	0.4	0.15	11.5	0.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3094)
DoxX	PF07681.7	gi|55376320|ref|YP_134173.1|	-	1.6e-11	44.4	8.9	1.6e-11	44.4	6.2	1.7	2	0	0	2	2	2	1	DoxX
HR_lesion	PF05514.6	gi|55376320|ref|YP_134173.1|	-	1.1e-05	25.2	2.0	0.0002	21.2	0.3	2.0	1	1	1	2	2	2	1	HR-like	lesion-inducing
SURF4	PF02077.10	gi|55376320|ref|YP_134173.1|	-	0.00011	21.6	0.5	0.00016	21.1	0.4	1.3	1	0	0	1	1	1	1	SURF4	family
DoxX_2	PF13564.1	gi|55376320|ref|YP_134173.1|	-	0.003	17.5	10.9	0.0074	16.2	7.0	1.9	1	1	1	2	2	2	1	DoxX-like	family
Rab5ip	PF07019.7	gi|55376320|ref|YP_134173.1|	-	0.014	15.5	1.5	0.014	15.5	1.0	2.0	2	0	0	2	2	2	0	Rab5-interacting	protein	(Rab5ip)
DUF2304	PF10066.4	gi|55376320|ref|YP_134173.1|	-	0.1	12.4	0.2	0.17	11.7	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2304)
DUF4006	PF13179.1	gi|55376320|ref|YP_134173.1|	-	0.89	9.1	0.0	0.89	9.1	0.0	2.6	2	1	1	3	3	3	0	Family	of	unknown	function	(DUF4006)
DUF4064	PF13273.1	gi|55376320|ref|YP_134173.1|	-	2.1	8.4	9.1	2	8.5	3.9	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
DUF3040	PF11239.3	gi|55376320|ref|YP_134173.1|	-	8	6.5	10.6	0.13	12.3	1.5	2.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3040)
Arg_repressor_C	PF02863.13	gi|55376322|ref|YP_134175.1|	-	0.016	14.6	0.2	0.027	13.9	0.1	1.4	1	0	0	1	1	1	0	Arginine	repressor,	C-terminal	domain
EPV_E5	PF08135.6	gi|55376323|ref|YP_134176.1|	-	0.069	13.1	0.9	0.089	12.8	0.6	1.1	1	0	0	1	1	1	0	Major	transforming	protein	E5	family
LcrG	PF07216.7	gi|55376324|ref|YP_134177.1|	-	5.9e-05	23.0	0.5	3.1	7.8	0.0	4.1	4	0	0	4	4	4	2	LcrG	protein
GRAS	PF03514.9	gi|55376324|ref|YP_134177.1|	-	0.00015	20.6	0.2	1.5	7.4	0.0	3.2	2	1	1	3	3	3	2	GRAS	domain	family
Ret_tiss	PF10044.4	gi|55376324|ref|YP_134177.1|	-	0.00033	21.1	0.0	14	6.2	0.0	3.7	2	1	2	4	4	4	1	Retinal	tissue	protein
LAGLIDADG_3	PF14528.1	gi|55376324|ref|YP_134177.1|	-	0.00053	20.1	0.1	11	6.2	0.0	3.9	2	1	2	4	4	4	1	LAGLIDADG-like	domain
LexA_DNA_bind	PF01726.11	gi|55376324|ref|YP_134177.1|	-	0.00072	19.0	0.0	0.48	10.0	0.0	2.7	3	0	0	3	3	3	2	LexA	DNA	binding	domain
B12-binding	PF02310.14	gi|55376324|ref|YP_134177.1|	-	0.0013	18.5	0.1	0.32	10.8	0.0	3.0	3	0	0	3	3	3	1	B12	binding	domain
Lipase3_N	PF03893.11	gi|55376324|ref|YP_134177.1|	-	0.0039	16.9	5.3	0.19	11.5	0.0	2.9	4	0	0	4	4	4	2	Lipase	3	N-terminal	region
Snf7	PF03357.16	gi|55376324|ref|YP_134177.1|	-	0.0081	15.5	4.1	0.41	10.0	0.0	3.6	4	0	0	4	4	4	1	Snf7
RHH_1	PF01402.16	gi|55376324|ref|YP_134177.1|	-	0.12	12.2	5.1	63	3.6	0.0	4.2	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
Ribosomal_L29	PF00831.18	gi|55376324|ref|YP_134177.1|	-	2.2	8.0	5.2	29	4.4	0.0	3.7	4	0	0	4	4	4	0	Ribosomal	L29	protein
Usp	PF00582.21	gi|55376325|ref|YP_134178.1|	-	3.2e-30	105.1	0.1	3.6e-30	104.9	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
EF-hand_5	PF13202.1	gi|55376326|ref|YP_134179.1|	-	0.75	9.2	3.1	10	5.6	0.3	2.4	2	0	0	2	2	2	0	EF	hand
EF-hand_1	PF00036.27	gi|55376326|ref|YP_134179.1|	-	0.76	9.2	2.5	20	4.7	0.2	2.5	2	0	0	2	2	2	0	EF	hand
HTH_23	PF13384.1	gi|55376328|ref|YP_134181.1|	-	1.6e-11	43.4	0.1	6.1e-11	41.6	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.1	gi|55376328|ref|YP_134181.1|	-	2.1e-07	31.0	0.2	7e-07	29.3	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|55376328|ref|YP_134181.1|	-	1.2e-05	25.2	1.8	2.1e-05	24.4	0.4	2.0	2	1	0	2	2	2	1	Helix-turn-helix	domain
DUF746	PF05344.6	gi|55376328|ref|YP_134181.1|	-	0.0068	15.9	0.0	0.027	14.0	0.0	1.9	2	0	0	2	2	2	1	Domain	of	Unknown	Function	(DUF746)
HTH_32	PF13565.1	gi|55376328|ref|YP_134181.1|	-	0.076	13.8	2.6	0.09	13.5	0.8	1.8	2	0	0	2	2	2	0	Homeodomain-like	domain
LZ_Tnp_IS481	PF13011.1	gi|55376328|ref|YP_134181.1|	-	0.13	12.5	0.6	0.21	11.9	0.4	1.4	1	1	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
HTH_31	PF13560.1	gi|55376328|ref|YP_134181.1|	-	0.27	11.4	3.7	0.54	10.4	0.2	2.6	2	1	1	3	3	3	0	Helix-turn-helix	domain
DDE_3	PF13358.1	gi|55376329|ref|YP_134182.1|	-	3.7e-14	52.6	0.0	6e-14	52.0	0.0	1.4	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.1	gi|55376329|ref|YP_134182.1|	-	2.6e-09	36.5	0.0	4.6e-09	35.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
rve	PF00665.21	gi|55376329|ref|YP_134182.1|	-	1.5e-05	25.0	0.0	3.3e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
DDE_1	PF03184.14	gi|55376329|ref|YP_134182.1|	-	0.00046	19.3	0.0	0.00065	18.9	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
Lipase_GDSL_3	PF14606.1	gi|55376329|ref|YP_134182.1|	-	0.083	12.6	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
HTH_32	PF13565.1	gi|55376329|ref|YP_134182.1|	-	0.16	12.7	1.2	2.3	9.0	0.0	2.8	2	1	1	3	3	3	0	Homeodomain-like	domain
DDE_Tnp_1	PF01609.16	gi|55376331|ref|YP_134184.1|	-	5.4e-05	22.8	0.1	7.5e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
Herpes_ICP4_C	PF03585.9	gi|55376332|ref|YP_134185.1|	-	0.024	13.3	0.0	0.025	13.3	0.0	1.0	1	0	0	1	1	1	0	Herpesvirus	ICP4-like	protein	C-terminal	region
DUF605	PF04652.11	gi|55376333|ref|YP_134186.1|	-	1.4	8.2	20.4	1.8	7.9	14.1	1.1	1	0	0	1	1	1	0	Vta1	like
Shisa	PF13908.1	gi|55376333|ref|YP_134186.1|	-	1.4	9.0	9.5	2.2	8.4	6.6	1.4	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
FAP	PF07174.6	gi|55376333|ref|YP_134186.1|	-	2.2	7.4	28.9	3.8	6.7	20.1	1.3	1	0	0	1	1	1	0	Fibronectin-attachment	protein	(FAP)
Med13_C	PF06333.7	gi|55376333|ref|YP_134186.1|	-	3.2	6.1	6.7	4.3	5.7	4.6	1.2	1	0	0	1	1	1	0	Mediator	complex	subunit	13	C-terminal
UPF0236	PF06782.6	gi|55376335|ref|YP_134188.1|	-	8.3e-05	21.1	1.0	0.00017	20.1	0.0	1.8	2	1	0	2	2	2	1	Uncharacterised	protein	family	(UPF0236)
Transposase_mut	PF00872.13	gi|55376335|ref|YP_134188.1|	-	0.00034	19.2	2.1	0.04	12.4	0.2	2.4	2	1	0	2	2	2	2	Transposase,	Mutator	family
UPF0118	PF01594.11	gi|55376336|ref|YP_134189.1|	-	9.7e-22	77.3	34.6	6.8e-21	74.5	24.0	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF20
MscL	PF01741.13	gi|55376336|ref|YP_134189.1|	-	3.7	7.6	7.8	12	6.0	5.1	2.1	2	0	0	2	2	2	0	Large-conductance	mechanosensitive	channel,	MscL
MMPL	PF03176.10	gi|55376337|ref|YP_134190.1|	-	7.6e-35	120.1	20.0	1.2e-22	80.0	4.6	2.3	2	0	0	2	2	2	2	MMPL	family
Patched	PF02460.13	gi|55376337|ref|YP_134190.1|	-	1.6e-10	39.6	19.7	4.4e-09	34.8	3.9	2.3	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.3	gi|55376337|ref|YP_134190.1|	-	2.3e-07	30.3	2.0	2.3e-07	30.3	1.4	2.7	3	0	0	3	3	3	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Oxidored_q1_C	PF01010.14	gi|55376337|ref|YP_134190.1|	-	8.9	5.7	6.6	11	5.4	0.7	2.4	2	0	0	2	2	2	0	NADH-Ubiquinone	oxidoreductase	(complex	I)	subunit	C-terminus
CARDB	PF07705.6	gi|55376338|ref|YP_134191.1|	-	4.4e-12	45.9	12.4	0.00065	19.7	0.1	4.7	3	1	2	5	5	5	3	CARDB
NPCBM_assoc	PF10633.4	gi|55376338|ref|YP_134191.1|	-	1.8e-09	37.4	9.2	0.0052	16.8	0.6	5.4	5	1	0	5	5	5	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Transglut_C	PF00927.17	gi|55376338|ref|YP_134191.1|	-	3.4e-05	23.8	0.1	0.49	10.4	0.0	3.5	3	0	0	3	3	3	2	Transglutaminase	family,	C-terminal	ig	like	domain
DUF11	PF01345.13	gi|55376338|ref|YP_134191.1|	-	0.0021	18.0	23.7	0.092	12.8	0.2	5.5	4	1	1	5	5	5	3	Domain	of	unknown	function	DUF11
TRAP_alpha	PF03896.11	gi|55376338|ref|YP_134191.1|	-	0.011	14.7	0.0	0.76	8.7	0.0	2.6	3	0	0	3	3	3	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Fn3-like	PF14310.1	gi|55376338|ref|YP_134191.1|	-	0.013	15.4	0.1	0.34	10.8	0.0	3.3	3	0	0	3	3	3	0	Fibronectin	type	III-like	domain
Gp5_C	PF06715.7	gi|55376338|ref|YP_134191.1|	-	0.087	12.7	3.6	3.4	7.7	0.1	3.4	2	0	0	2	2	2	0	Gp5	C-terminal	repeat	(3	copies)
FixG_C	PF11614.3	gi|55376338|ref|YP_134191.1|	-	0.095	12.8	1.9	7.1	6.7	0.0	4.1	2	2	2	4	4	4	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
TetR_C_6	PF13977.1	gi|55376339|ref|YP_134192.1|	-	8.1e-11	41.9	0.0	1.2e-10	41.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
TetR_N	PF00440.18	gi|55376339|ref|YP_134192.1|	-	1.3e-09	37.5	0.5	2.6e-09	36.5	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
DUF3139	PF11337.3	gi|55376339|ref|YP_134192.1|	-	0.091	13.0	0.1	0.18	12.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3139)
HTH_5	PF01022.15	gi|55376339|ref|YP_134192.1|	-	0.1	12.2	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4	PF04545.11	gi|55376339|ref|YP_134192.1|	-	0.12	11.6	0.1	0.3	10.4	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
MMPL	PF03176.10	gi|55376341|ref|YP_134194.1|	-	7.1e-44	149.8	3.2	5.7e-24	84.4	1.0	2.4	2	0	0	2	2	2	2	MMPL	family
ACR_tran	PF00873.14	gi|55376341|ref|YP_134194.1|	-	3.4e-10	38.0	6.4	2.6e-05	21.8	0.3	2.2	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
Sterol-sensing	PF12349.3	gi|55376341|ref|YP_134194.1|	-	4.2e-09	36.0	0.0	4.2e-09	36.0	0.0	3.5	5	0	0	5	5	5	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.13	gi|55376341|ref|YP_134194.1|	-	0.012	13.5	11.4	0.034	12.0	4.7	2.4	3	0	0	3	3	3	0	Patched	family
OAD_gamma	PF04277.8	gi|55376341|ref|YP_134194.1|	-	0.62	10.4	3.6	30	5.0	0.2	3.5	3	0	0	3	3	3	0	Oxaloacetate	decarboxylase,	gamma	chain
DUF3098	PF11297.3	gi|55376341|ref|YP_134194.1|	-	2	8.2	8.7	1.8	8.3	0.2	3.6	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3098)
NPCBM_assoc	PF10633.4	gi|55376342|ref|YP_134195.1|	-	2.1e-18	66.1	18.6	4.8e-06	26.5	0.2	5.4	4	1	0	4	4	4	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|55376342|ref|YP_134195.1|	-	4.7e-14	52.2	13.2	3.2e-05	23.8	1.1	4.2	4	1	0	4	4	4	3	CARDB
Fn3-like	PF14310.1	gi|55376342|ref|YP_134195.1|	-	0.00074	19.4	1.2	1.5	8.7	0.0	4.2	4	0	0	4	4	4	1	Fibronectin	type	III-like	domain
DUF2969	PF11184.3	gi|55376342|ref|YP_134195.1|	-	0.002	18.1	1.9	0.0052	16.8	0.3	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2969)
DUF4352	PF11611.3	gi|55376342|ref|YP_134195.1|	-	0.026	14.6	6.7	0.99	9.5	0.1	4.0	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF4352)
DUF11	PF01345.13	gi|55376342|ref|YP_134195.1|	-	0.089	12.8	17.9	0.55	10.3	1.4	4.6	4	0	0	4	4	4	0	Domain	of	unknown	function	DUF11
TetR_N	PF00440.18	gi|55376343|ref|YP_134196.1|	-	1.2e-06	28.0	0.0	1.9e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4	PF04545.11	gi|55376343|ref|YP_134196.1|	-	0.0022	17.2	0.0	0.0043	16.3	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
UPF0122	PF04297.9	gi|55376343|ref|YP_134196.1|	-	0.0024	17.8	0.2	0.018	15.0	0.1	2.2	2	1	1	3	3	3	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
RyR	PF02026.11	gi|55376343|ref|YP_134196.1|	-	0.034	14.1	0.1	0.063	13.3	0.1	1.4	1	0	0	1	1	1	0	RyR	domain
MSC	PF09402.5	gi|55376343|ref|YP_134196.1|	-	0.081	11.6	0.0	0.097	11.3	0.0	1.1	1	0	0	1	1	1	0	Man1-Src1p-C-terminal	domain
DDE_Tnp_1	PF01609.16	gi|55376344|ref|YP_134197.1|	-	3.4e-23	82.3	2.1	8.4e-23	81.0	1.5	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.1	gi|55376344|ref|YP_134197.1|	-	0.00023	20.9	0.0	0.00034	20.3	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55376344|ref|YP_134197.1|	-	0.0035	17.3	0.6	0.011	15.7	0.1	2.0	1	1	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.1	gi|55376344|ref|YP_134197.1|	-	0.0038	17.3	0.2	0.0072	16.4	0.1	1.5	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1989	PF09347.5	gi|55376344|ref|YP_134197.1|	-	0.052	12.9	0.1	0.077	12.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1989)
DEDD_Tnp_IS110	PF01548.12	gi|55376346|ref|YP_134199.1|	-	0.0079	15.8	0.2	0.013	15.1	0.1	1.4	1	0	0	1	1	1	1	Transposase
DUF2312	PF10073.4	gi|55376346|ref|YP_134199.1|	-	0.044	13.1	0.1	0.091	12.1	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Transposase_20	PF02371.11	gi|55376347|ref|YP_134200.1|	-	1.4e-23	82.7	0.0	2.2e-23	82.1	0.0	1.3	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DDE_Tnp_1	PF01609.16	gi|55376348|ref|YP_134201.1|	-	1.3e-11	44.4	2.8	3.9e-11	42.9	1.9	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4625	PF15418.1	gi|55376350|ref|YP_134203.1|	-	7.3e-05	22.8	8.3	0.27	11.3	0.2	5.6	4	1	1	6	6	6	2	Domain	of	unknown	function	(DUF4625)
Big_3_4	PF13754.1	gi|55376350|ref|YP_134203.1|	-	8.6e-05	22.7	0.5	8.6e-05	22.7	0.4	8.3	8	2	1	9	9	9	1	Bacterial	Ig-like	domain	(group	3)
A2M_N_2	PF07703.9	gi|55376350|ref|YP_134203.1|	-	0.00096	18.9	4.3	0.1	12.4	0.0	3.9	3	0	0	3	3	3	1	Alpha-2-macroglobulin	family	N-terminal	region
Lip_prot_lig_C	PF10437.4	gi|55376350|ref|YP_134203.1|	-	0.1	12.2	0.1	0.27	10.9	0.0	1.7	1	0	0	1	1	1	0	Bacterial	lipoate	protein	ligase	C-terminus
AAA_10	PF12846.2	gi|55376357|ref|YP_134210.1|	-	1.1e-38	133.4	0.8	2.4e-37	129.0	0.0	3.1	4	0	0	4	4	4	1	AAA-like	domain
AAA_22	PF13401.1	gi|55376357|ref|YP_134210.1|	-	9.1e-05	22.6	0.2	0.019	15.1	0.1	2.7	2	0	0	2	2	2	1	AAA	domain
Zot	PF05707.7	gi|55376357|ref|YP_134210.1|	-	0.00018	21.0	0.2	0.0043	16.5	0.0	2.3	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
CagE_TrbE_VirB	PF03135.9	gi|55376357|ref|YP_134210.1|	-	0.001	18.9	0.0	0.0027	17.4	0.0	1.7	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
DEAD	PF00270.24	gi|55376357|ref|YP_134210.1|	-	0.017	14.5	2.0	0.095	12.1	1.4	2.1	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
ArgK	PF03308.11	gi|55376357|ref|YP_134210.1|	-	0.06	12.1	0.0	0.12	11.1	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
RHH_1	PF01402.16	gi|55376358|ref|YP_134211.1|	-	0.00051	19.8	0.2	0.00051	19.8	0.2	1.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF1778	PF08681.6	gi|55376358|ref|YP_134211.1|	-	0.0017	18.1	0.6	0.0017	18.1	0.4	1.8	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1778)
DUF2764	PF10962.3	gi|55376358|ref|YP_134211.1|	-	0.059	12.6	0.1	0.072	12.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2764)
YtxH	PF12732.2	gi|55376358|ref|YP_134211.1|	-	0.065	13.6	1.6	0.23	11.8	1.1	1.9	1	1	0	1	1	1	0	YtxH-like	protein
Phe_tRNA-synt_N	PF02912.13	gi|55376358|ref|YP_134211.1|	-	0.58	9.9	4.4	0.23	11.2	1.1	1.8	2	0	0	2	2	2	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
RHH_1	PF01402.16	gi|55376359|ref|YP_134212.1|	-	0.0065	16.3	0.5	0.017	15.0	0.0	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
WWE	PF02825.15	gi|55376359|ref|YP_134212.1|	-	0.049	13.0	0.2	5.5	6.4	0.1	2.3	2	0	0	2	2	2	0	WWE	domain
HD_3	PF13023.1	gi|55376359|ref|YP_134212.1|	-	0.1	12.3	0.8	0.12	12.0	0.6	1.3	1	0	0	1	1	1	0	HD	domain
Relaxase	PF03432.9	gi|55376360|ref|YP_134213.1|	-	0.032	13.6	3.2	0.095	12.0	2.2	1.8	1	1	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
TrwB_AAD_bind	PF10412.4	gi|55376361|ref|YP_134214.1|	-	1.2e-33	116.3	0.0	1.7e-33	115.8	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.2	gi|55376361|ref|YP_134214.1|	-	1.6e-15	57.3	0.0	3.6e-15	56.1	0.0	1.5	1	1	0	1	1	1	1	AAA-like	domain
TraG-D_C	PF12696.2	gi|55376361|ref|YP_134214.1|	-	2.7e-13	49.9	1.2	4.6e-13	49.1	0.0	1.9	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.1	gi|55376361|ref|YP_134214.1|	-	3.8e-05	23.8	0.0	0.0013	18.8	0.0	2.5	1	1	1	2	2	2	1	AAA	domain
ABC_tran	PF00005.22	gi|55376361|ref|YP_134214.1|	-	0.00091	19.5	0.0	0.0024	18.1	0.0	1.8	1	0	0	1	1	1	1	ABC	transporter
T4SS-DNA_transf	PF02534.9	gi|55376361|ref|YP_134214.1|	-	0.0013	17.4	0.0	0.0021	16.7	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
KaiC	PF06745.8	gi|55376361|ref|YP_134214.1|	-	0.015	14.4	0.0	0.068	12.2	0.0	1.9	2	0	0	2	2	2	0	KaiC
DUF87	PF01935.12	gi|55376361|ref|YP_134214.1|	-	0.016	15.0	0.0	0.037	13.8	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA_17	PF13207.1	gi|55376361|ref|YP_134214.1|	-	0.03	15.1	0.0	0.068	13.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|55376361|ref|YP_134214.1|	-	0.04	13.0	0.0	0.069	12.2	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
DEAD	PF00270.24	gi|55376361|ref|YP_134214.1|	-	0.047	13.1	0.1	0.38	10.2	0.0	2.4	2	1	0	3	3	3	0	DEAD/DEAH	box	helicase
AAA_16	PF13191.1	gi|55376361|ref|YP_134214.1|	-	0.051	13.5	0.0	0.35	10.8	0.0	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.1	gi|55376361|ref|YP_134214.1|	-	0.075	12.5	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SE	PF00437.15	gi|55376361|ref|YP_134214.1|	-	0.12	11.2	0.0	0.21	10.4	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
tRNA_anti-codon	PF01336.20	gi|55376365|ref|YP_134218.1|	-	0.0035	17.1	0.1	0.0062	16.3	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DUF796	PF05638.7	gi|55376365|ref|YP_134218.1|	-	0.071	13.1	0.0	0.33	10.9	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF796)
Mrr_cat	PF04471.7	gi|55376371|ref|YP_134224.1|	-	0.00013	21.7	0.1	0.00025	20.8	0.0	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
TOBE_2	PF08402.5	gi|55376372|ref|YP_134225.1|	-	0.058	13.3	0.8	0.49	10.4	0.5	2.0	1	1	1	2	2	2	0	TOBE	domain
Crystall_2	PF09076.5	gi|55376372|ref|YP_134225.1|	-	0.071	12.8	0.0	0.12	12.1	0.0	1.3	2	0	0	2	2	2	0	Beta/Gamma	crystallin
DUF4143	PF13635.1	gi|55376375|ref|YP_134228.1|	-	0.024	14.8	0.1	0.061	13.5	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4143)
Activator-TraM	PF11657.3	gi|55376377|ref|YP_134230.1|	-	0.16	11.4	1.3	0.22	10.9	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	activator	TraM
zf-ribbon_3	PF13248.1	gi|55376378|ref|YP_134231.1|	-	0.00016	20.7	7.5	0.0096	15.1	0.7	3.4	3	0	0	3	3	3	1	zinc-ribbon	domain
DZR	PF12773.2	gi|55376378|ref|YP_134231.1|	-	0.0019	17.9	12.1	0.0052	16.5	1.0	2.8	2	1	0	2	2	2	2	Double	zinc	ribbon
HypA	PF01155.14	gi|55376378|ref|YP_134231.1|	-	0.011	15.4	5.2	0.16	11.7	0.1	2.3	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
DUF4596	PF15363.1	gi|55376378|ref|YP_134231.1|	-	0.026	14.4	0.2	0.088	12.7	0.2	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4596)
zf-C3HC4_3	PF13920.1	gi|55376378|ref|YP_134231.1|	-	0.05	13.2	1.4	0.05	13.2	1.0	2.3	3	0	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
Baculo_LEF5_C	PF11792.3	gi|55376378|ref|YP_134231.1|	-	0.15	11.4	0.1	0.15	11.4	0.0	2.8	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zinc_ribbon_2	PF13240.1	gi|55376378|ref|YP_134231.1|	-	0.15	11.5	15.3	0.058	12.9	1.5	3.5	3	0	0	3	3	3	0	zinc-ribbon	domain
Metal_resist	PF13801.1	gi|55376379|ref|YP_134232.1|	-	0.052	13.5	0.7	0.088	12.7	0.5	1.3	1	0	0	1	1	1	0	Heavy-metal	resistance
Antitoxin-MazE	PF04014.13	gi|55376380|ref|YP_134233.1|	-	1.1e-10	40.9	0.0	1.4e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
EutQ	PF06249.7	gi|55376380|ref|YP_134233.1|	-	0.016	14.7	0.0	0.017	14.6	0.0	1.1	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
DUF1905	PF08922.6	gi|55376380|ref|YP_134233.1|	-	0.017	14.6	0.0	0.024	14.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
PIN	PF01850.16	gi|55376381|ref|YP_134234.1|	-	5.5e-14	52.5	0.2	6.2e-14	52.3	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|55376381|ref|YP_134234.1|	-	0.0049	17.5	0.1	0.0054	17.4	0.1	1.3	1	1	0	1	1	1	1	PIN	domain
DUF2800	PF10926.3	gi|55376382|ref|YP_134235.1|	-	0.00014	21.0	0.8	0.00037	19.7	0.0	1.8	1	1	0	2	2	2	1	Protein	of	unknown	function	(DUF2800)
TSC22	PF01166.13	gi|55376382|ref|YP_134235.1|	-	0.035	14.0	2.3	0.4	10.6	1.8	2.4	2	0	0	2	2	2	0	TSC-22/dip/bun	family
DivIC	PF04977.10	gi|55376382|ref|YP_134235.1|	-	0.062	12.7	0.4	0.062	12.7	0.3	2.2	3	0	0	3	3	3	0	Septum	formation	initiator
DUF2730	PF10805.3	gi|55376382|ref|YP_134235.1|	-	0.072	12.8	0.8	0.25	11.1	0.6	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Med9	PF07544.8	gi|55376382|ref|YP_134235.1|	-	0.09	12.5	2.1	0.22	11.2	0.9	2.1	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
IncA	PF04156.9	gi|55376382|ref|YP_134235.1|	-	0.41	10.2	6.7	0.88	9.1	1.6	2.2	2	0	0	2	2	2	0	IncA	protein
ATP-grasp_4	PF13535.1	gi|55376383|ref|YP_134236.1|	-	0.058	13.1	0.3	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	ATP-grasp	domain
PadR	PF03551.9	gi|55376385|ref|YP_134238.1|	-	1.7e-09	37.3	0.1	2e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|55376385|ref|YP_134238.1|	-	0.036	13.7	0.0	0.051	13.2	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.14	gi|55376385|ref|YP_134238.1|	-	0.045	13.6	0.0	0.054	13.4	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF4423	PF14394.1	gi|55376385|ref|YP_134238.1|	-	0.05	13.1	0.0	0.06	12.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_12	PF08461.5	gi|55376385|ref|YP_134238.1|	-	0.1	12.3	0.0	0.22	11.2	0.0	1.5	1	1	1	2	2	2	0	Ribonuclease	R	winged-helix	domain
Cdc6_C	PF09079.6	gi|55376385|ref|YP_134238.1|	-	0.12	12.0	0.4	0.57	9.9	0.3	1.9	1	1	0	1	1	1	0	CDC6,	C	terminal
Slu7	PF11708.3	gi|55376386|ref|YP_134239.1|	-	0.14	11.8	4.0	0.15	11.8	2.8	1.1	1	0	0	1	1	1	0	Pre-mRNA	splicing	Prp18-interacting	factor
CbiA	PF01656.18	gi|55376387|ref|YP_134240.1|	-	2.3e-29	102.2	0.0	2.9e-29	101.8	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55376387|ref|YP_134240.1|	-	1.7e-11	44.2	0.0	3.4e-11	43.3	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|55376387|ref|YP_134240.1|	-	1.7e-08	33.8	0.1	1.6e-05	24.1	0.1	2.1	1	1	1	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|55376387|ref|YP_134240.1|	-	8.5e-07	28.2	0.3	1.7e-06	27.2	0.2	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|55376387|ref|YP_134240.1|	-	2.3e-06	26.9	0.0	7.4e-06	25.3	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
YhjQ	PF06564.7	gi|55376387|ref|YP_134240.1|	-	0.00011	21.6	0.0	0.00085	18.7	0.0	2.0	1	1	0	1	1	1	1	YhjQ	protein
VirC1	PF07015.6	gi|55376387|ref|YP_134240.1|	-	0.0026	16.8	0.2	0.007	15.4	0.1	1.7	1	1	1	2	2	2	1	VirC1	protein
DUF2120	PF09893.4	gi|55376387|ref|YP_134240.1|	-	0.039	13.9	0.0	0.084	12.8	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
AAA_25	PF13481.1	gi|55376387|ref|YP_134240.1|	-	0.067	12.5	0.0	0.21	10.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|55376387|ref|YP_134240.1|	-	0.087	12.2	0.0	0.13	11.6	0.0	1.3	1	1	0	1	1	1	0	AAA-like	domain
Cdc6_C	PF09079.6	gi|55376388|ref|YP_134241.1|	-	1.3e-15	56.8	0.0	2.6e-15	55.8	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_16	PF13191.1	gi|55376388|ref|YP_134241.1|	-	9.2e-15	55.0	1.5	1.2e-13	51.5	0.1	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|55376388|ref|YP_134241.1|	-	6.8e-10	39.2	0.0	2.7e-09	37.3	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|55376388|ref|YP_134241.1|	-	2.1e-09	37.6	0.0	4.5e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|55376388|ref|YP_134241.1|	-	2.4e-06	26.6	0.0	5e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|55376388|ref|YP_134241.1|	-	6e-05	22.8	0.0	0.00011	22.0	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
Sigma54_activat	PF00158.21	gi|55376388|ref|YP_134241.1|	-	0.0024	17.3	0.0	0.0044	16.5	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_30	PF13604.1	gi|55376388|ref|YP_134241.1|	-	0.005	16.4	0.0	0.024	14.2	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|55376388|ref|YP_134241.1|	-	0.0083	15.6	0.0	0.02	14.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.17	gi|55376388|ref|YP_134241.1|	-	0.014	14.2	0.0	0.022	13.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
PIF1	PF05970.9	gi|55376388|ref|YP_134241.1|	-	0.027	13.4	0.0	0.06	12.2	0.0	1.5	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_25	PF13481.1	gi|55376388|ref|YP_134241.1|	-	0.03	13.7	0.0	0.36	10.2	0.0	2.4	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.6	gi|55376388|ref|YP_134241.1|	-	0.043	12.5	0.0	0.077	11.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	TniB	protein
Mg_chelatase	PF01078.16	gi|55376388|ref|YP_134241.1|	-	0.048	12.8	0.0	0.25	10.4	0.0	2.0	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.12	gi|55376388|ref|YP_134241.1|	-	0.064	12.6	0.0	0.17	11.2	0.0	1.7	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|55376388|ref|YP_134241.1|	-	0.074	12.7	0.0	0.26	10.9	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_19	PF13245.1	gi|55376388|ref|YP_134241.1|	-	0.089	12.5	0.0	0.24	11.1	0.0	1.8	1	1	0	1	1	1	0	Part	of	AAA	domain
AAA_5	PF07728.9	gi|55376388|ref|YP_134241.1|	-	0.091	12.4	0.0	0.31	10.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ABC_tran	PF00005.22	gi|55376388|ref|YP_134241.1|	-	0.11	12.8	0.1	0.74	10.1	0.1	2.5	1	1	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.17	gi|55376388|ref|YP_134241.1|	-	0.11	12.6	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DDE_Tnp_IS240	PF13610.1	gi|55376389|ref|YP_134242.1|	-	3.8e-20	72.2	0.2	5.4e-20	71.7	0.2	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.1	gi|55376389|ref|YP_134242.1|	-	6.1e-08	32.0	3.0	1.2e-07	31.1	2.0	1.5	1	0	0	1	1	1	1	Integrase	core	domain
rve	PF00665.21	gi|55376389|ref|YP_134242.1|	-	0.00043	20.3	0.2	0.00082	19.4	0.1	1.6	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.5	gi|55376389|ref|YP_134242.1|	-	0.0011	18.7	2.8	0.16	11.8	0.1	2.8	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2384)
DDE_Tnp_IS66	PF03050.9	gi|55376389|ref|YP_134242.1|	-	0.039	13.1	0.2	0.079	12.1	0.1	1.7	1	1	0	1	1	1	0	Transposase	IS66	family
DDE_Tnp_1	PF01609.16	gi|55376390|ref|YP_134243.1|	-	4.2e-13	49.3	0.0	4.8e-13	49.1	0.0	1.0	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.1	gi|55376390|ref|YP_134243.1|	-	0.0012	18.8	0.0	0.0016	18.4	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.16	gi|55376391|ref|YP_134244.1|	-	0.0023	17.5	0.0	0.0031	17.0	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
Y1_Tnp	PF01797.11	gi|55376393|ref|YP_134246.1|	-	1.4e-37	128.2	0.0	1.6e-37	128.0	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
OrfB_IS605	PF01385.14	gi|55376394|ref|YP_134247.1|	-	3.7e-28	98.4	0.2	6.9e-28	97.5	0.0	1.5	2	0	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|55376394|ref|YP_134247.1|	-	3.1e-20	71.6	2.5	3.9e-20	71.2	0.1	2.1	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|55376394|ref|YP_134247.1|	-	2.6e-08	33.0	0.3	4.6e-08	32.2	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
DZR	PF12773.2	gi|55376394|ref|YP_134247.1|	-	0.14	11.9	2.0	0.38	10.6	1.4	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|55376394|ref|YP_134247.1|	-	0.27	10.5	2.5	2.3	7.5	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.1	gi|55376394|ref|YP_134247.1|	-	2.3	7.7	5.3	0.35	10.4	0.9	1.7	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
OrfB_IS605	PF01385.14	gi|55376395|ref|YP_134248.1|	-	7.4e-55	185.8	0.2	9.5e-55	185.4	0.1	1.1	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|55376395|ref|YP_134248.1|	-	4.4e-20	71.0	0.9	1.2e-19	69.7	0.6	1.8	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.14	gi|55376395|ref|YP_134248.1|	-	0.064	13.1	1.2	0.2	11.5	0.4	2.0	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
DUF3791	PF12668.2	gi|55376395|ref|YP_134248.1|	-	0.12	11.9	0.1	0.41	10.2	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3791)
C1_3	PF07649.7	gi|55376395|ref|YP_134248.1|	-	1.2	9.2	4.9	0.98	9.5	2.1	1.9	2	0	0	2	2	2	0	C1-like	domain
TetR_N	PF00440.18	gi|55376396|ref|YP_134249.1|	-	6.3e-13	48.1	0.2	1.2e-12	47.2	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.1	gi|55376396|ref|YP_134249.1|	-	1.2e-11	44.6	0.0	1.6e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	repressor
TetR_C_5	PF08360.6	gi|55376396|ref|YP_134249.1|	-	0.0012	18.7	0.2	0.049	13.5	0.0	2.7	1	1	2	3	3	3	1	QacR-like	protein,	C-terminal	region
HTH_38	PF13936.1	gi|55376396|ref|YP_134249.1|	-	0.011	15.3	0.0	0.061	12.8	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|55376396|ref|YP_134249.1|	-	0.016	14.8	0.0	0.034	13.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
LsmAD	PF06741.8	gi|55376396|ref|YP_134249.1|	-	0.017	15.2	0.0	2.8	8.0	0.1	2.2	2	0	0	2	2	2	0	LsmAD	domain
HTH_7	PF02796.10	gi|55376396|ref|YP_134249.1|	-	0.045	13.6	0.0	0.17	11.7	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.1	gi|55376396|ref|YP_134249.1|	-	0.053	13.1	0.0	0.25	11.0	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_AraC	PF00165.18	gi|55376396|ref|YP_134249.1|	-	0.065	13.0	0.1	0.14	12.0	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
UPF0122	PF04297.9	gi|55376396|ref|YP_134249.1|	-	0.071	13.1	0.4	0.071	13.1	0.3	2.1	2	1	1	3	3	3	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
TetR_C_4	PF08359.6	gi|55376396|ref|YP_134249.1|	-	0.09	12.7	0.2	0.2	11.5	0.1	1.7	1	1	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
HTH_22	PF13309.1	gi|55376396|ref|YP_134249.1|	-	0.12	12.1	0.0	0.59	9.9	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
TrmB	PF01978.14	gi|55376398|ref|YP_134251.1|	-	3.1e-17	62.0	0.0	5.6e-17	61.2	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.3	gi|55376398|ref|YP_134251.1|	-	3.5e-07	29.4	0.1	6.2e-07	28.6	0.0	1.5	2	0	0	2	2	2	1	Archaeal	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|55376398|ref|YP_134251.1|	-	0.0087	16.1	0.0	4.1	7.5	0.0	2.8	2	0	0	2	2	2	2	Transcriptional	regulator
HTH_26	PF13443.1	gi|55376399|ref|YP_134252.1|	-	0.13	12.4	0.0	13	6.0	0.0	2.1	1	1	1	2	2	2	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_29	PF13551.1	gi|55376402|ref|YP_134255.1|	-	3.7e-13	49.6	0.1	1.1e-12	48.0	0.0	1.9	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|55376402|ref|YP_134255.1|	-	8.8e-11	42.4	2.4	9.1e-10	39.2	0.1	2.7	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_33	PF13592.1	gi|55376402|ref|YP_134255.1|	-	4.6e-08	32.4	0.0	1.3e-07	31.0	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|55376402|ref|YP_134255.1|	-	1.3e-07	31.0	1.7	9.6e-07	28.2	0.1	2.5	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|55376402|ref|YP_134255.1|	-	8.3e-05	22.5	0.1	0.00024	21.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|55376402|ref|YP_134255.1|	-	0.00022	20.9	0.2	0.00048	19.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
LZ_Tnp_IS481	PF13011.1	gi|55376402|ref|YP_134255.1|	-	0.12	12.7	0.4	0.24	11.7	0.0	1.7	2	0	0	2	2	2	0	leucine-zipper	of	insertion	element	IS481
A2M_N	PF01835.14	gi|55376403|ref|YP_134256.1|	-	0.00052	20.2	5.4	0.33	11.2	0.1	5.6	4	1	1	5	5	5	1	MG2	domain
DUF3244	PF11589.3	gi|55376403|ref|YP_134256.1|	-	0.0045	16.6	7.7	0.16	11.6	0.3	4.1	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF3244)
MltA	PF03562.12	gi|55376403|ref|YP_134256.1|	-	0.13	11.9	0.0	0.27	10.9	0.0	1.5	1	0	0	1	1	1	0	MltA	specific	insert	domain
Trypan_PARP	PF05887.6	gi|55376403|ref|YP_134256.1|	-	2.5	7.8	29.3	0.076	12.8	15.0	2.3	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
OrfB_Zn_ribbon	PF07282.6	gi|55376404|ref|YP_134257.1|	-	4.9e-20	70.9	0.8	6e-20	70.6	0.6	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.14	gi|55376404|ref|YP_134257.1|	-	0.0095	15.7	0.4	0.011	15.5	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.2	gi|55376404|ref|YP_134257.1|	-	0.033	13.9	2.6	0.051	13.3	1.8	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
C1_1	PF00130.17	gi|55376404|ref|YP_134257.1|	-	0.039	13.6	1.7	0.074	12.7	1.2	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
PadR	PF03551.9	gi|55376405|ref|YP_134258.1|	-	5.8e-09	35.5	0.1	7.2e-09	35.2	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|55376405|ref|YP_134258.1|	-	0.0026	17.5	0.0	0.005	16.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|55376405|ref|YP_134258.1|	-	0.013	15.7	0.0	0.021	15.1	0.0	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
FUR	PF01475.14	gi|55376405|ref|YP_134258.1|	-	0.024	14.5	0.0	0.036	13.9	0.0	1.4	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
HxlR	PF01638.12	gi|55376405|ref|YP_134258.1|	-	0.055	13.1	0.0	0.075	12.6	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF4364	PF14277.1	gi|55376405|ref|YP_134258.1|	-	0.057	13.0	0.0	0.074	12.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DEDD_Tnp_IS110	PF01548.12	gi|55376407|ref|YP_134260.1|	-	1.4e-25	89.6	2.5	1.9e-25	89.1	1.7	1.2	1	0	0	1	1	1	1	Transposase
DUF2312	PF10073.4	gi|55376407|ref|YP_134260.1|	-	0.17	11.2	1.2	0.26	10.6	0.1	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
MRP-L20	PF12824.2	gi|55376410|ref|YP_134263.1|	-	0.12	12.3	0.0	0.12	12.3	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	ribosomal	protein	subunit	L20
Baculo_Y142	PF04913.7	gi|55376411|ref|YP_134264.1|	-	0.073	11.4	0.0	0.091	11.0	0.0	1.0	1	0	0	1	1	1	0	Baculovirus	Y142	protein