#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
MacB_PCD	PF12704.7	gi|55376281|ref|YP_134134.1|	-	1.7e-21	77.5	2.5	1.7e-21	77.5	2.5	1.9	2	1	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|55376281|ref|YP_134134.1|	-	1.2e-13	51.3	6.2	2.2e-12	47.3	0.3	3.1	3	0	0	3	3	3	2	FtsX-like	permease	family
ABC_tran	PF00005.27	gi|55376282|ref|YP_134135.1|	-	3.7e-34	118.2	0.0	4.7e-34	117.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|55376282|ref|YP_134135.1|	-	3.3e-06	27.1	0.5	0.056	13.3	0.1	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|55376282|ref|YP_134135.1|	-	4.6e-05	23.7	0.8	0.00037	20.8	0.8	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|55376282|ref|YP_134135.1|	-	0.0003	21.2	0.4	0.001	19.5	0.4	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|55376282|ref|YP_134135.1|	-	0.00035	20.2	0.8	0.082	12.5	0.1	2.4	3	0	0	3	3	3	1	AAA	domain
AAA_29	PF13555.6	gi|55376282|ref|YP_134135.1|	-	0.00096	18.9	0.2	0.002	17.8	0.2	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|55376282|ref|YP_134135.1|	-	0.0011	18.9	0.2	0.0032	17.4	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
SMC_N	PF02463.19	gi|55376282|ref|YP_134135.1|	-	0.0022	17.5	0.0	0.76	9.2	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|55376282|ref|YP_134135.1|	-	0.0099	16.0	0.4	0.028	14.6	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|55376282|ref|YP_134135.1|	-	0.011	16.2	0.2	0.024	15.1	0.2	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|55376282|ref|YP_134135.1|	-	0.015	15.0	0.3	0.031	14.0	0.3	1.7	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|55376282|ref|YP_134135.1|	-	0.018	14.1	0.1	0.027	13.6	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
cobW	PF02492.19	gi|55376282|ref|YP_134135.1|	-	0.027	14.1	0.2	0.049	13.2	0.2	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|55376282|ref|YP_134135.1|	-	0.041	13.6	0.1	0.07	12.8	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|55376282|ref|YP_134135.1|	-	0.048	13.7	0.4	0.38	10.8	0.1	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.17	gi|55376282|ref|YP_134135.1|	-	0.048	13.4	0.0	0.091	12.5	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|55376282|ref|YP_134135.1|	-	0.081	13.2	0.4	0.18	12.0	0.4	1.6	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|55376282|ref|YP_134135.1|	-	0.12	12.2	0.1	0.24	11.3	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
RNA_helicase	PF00910.22	gi|55376282|ref|YP_134135.1|	-	0.13	12.6	0.1	1.7	9.1	0.0	2.3	2	1	1	3	3	3	0	RNA	helicase
PhoH	PF02562.16	gi|55376282|ref|YP_134135.1|	-	0.15	11.5	0.7	0.64	9.4	0.1	2.0	2	0	0	2	2	2	0	PhoH-like	protein
NB-ARC	PF00931.22	gi|55376282|ref|YP_134135.1|	-	0.16	11.1	0.1	0.28	10.3	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|55376282|ref|YP_134135.1|	-	0.16	11.3	0.0	0.27	10.6	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ATPase_2	PF01637.18	gi|55376282|ref|YP_134135.1|	-	0.19	11.6	0.0	0.42	10.5	0.0	1.5	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|55376282|ref|YP_134135.1|	-	0.34	11.5	1.7	0.43	11.1	0.1	2.1	3	0	0	3	3	3	0	AAA	domain
Transglut_C	PF00927.22	gi|55376283|ref|YP_134136.1|	-	0.0096	16.0	0.5	0.38	10.9	0.1	2.5	2	0	0	2	2	2	1	Transglutaminase	family,	C-terminal	ig	like	domain
MG4	PF17789.1	gi|55376283|ref|YP_134136.1|	-	0.055	13.6	6.2	2.2	8.5	0.8	2.8	2	0	0	2	2	2	0	Macroglobulin	domain	MG4
DUF211	PF02680.14	gi|55376283|ref|YP_134136.1|	-	0.079	13.1	0.9	0.23	11.6	0.9	1.8	1	0	0	1	1	1	0	Uncharacterized	ArCR,	COG1888
Alpha_adaptinC2	PF02883.20	gi|55376283|ref|YP_134136.1|	-	0.16	12.3	1.7	10	6.5	0.1	3.1	3	1	1	4	4	4	0	Adaptin	C-terminal	domain
CARDB	PF07705.11	gi|55376283|ref|YP_134136.1|	-	0.42	10.9	14.9	0.79	10.0	0.7	3.3	3	1	1	4	4	4	0	CARDB
CEL_III_C	PF18054.1	gi|55376283|ref|YP_134136.1|	-	1.2	9.2	5.3	3.6	7.6	0.5	2.5	2	0	0	2	2	2	0	CEL-III	C-terminal
LPP20	PF02169.16	gi|55376283|ref|YP_134136.1|	-	2.1	8.8	7.9	0.63	10.4	1.2	2.9	2	1	1	3	3	3	0	LPP20	lipoprotein
DUF2249	PF10006.9	gi|55376284|ref|YP_134137.1|	-	0.014	15.2	0.1	0.015	15.2	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
DDE_Tnp_1	PF01609.21	gi|55376285|ref|YP_134138.1|	-	3.6e-10	39.9	2.5	1.9e-09	37.5	2.5	1.9	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|55376285|ref|YP_134138.1|	-	0.0083	16.1	0.1	0.024	14.6	0.0	1.8	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_3	PF13358.6	gi|55376286|ref|YP_134139.1|	-	3.5e-34	117.6	0.0	4.1e-34	117.5	0.0	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|55376286|ref|YP_134139.1|	-	0.052	13.7	0.0	0.073	13.3	0.0	1.3	1	0	0	1	1	1	0	Integrase	core	domain
NPCBM_assoc	PF10633.9	gi|55376287|ref|YP_134140.1|	-	2.3e-12	47.0	5.9	5e-06	26.7	0.9	2.8	2	1	0	2	2	2	2	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|55376287|ref|YP_134140.1|	-	4.3e-09	36.6	7.5	2.5e-05	24.5	0.4	2.3	2	0	0	2	2	2	2	CARDB
DUF11	PF01345.18	gi|55376287|ref|YP_134140.1|	-	2e-06	28.0	13.7	0.0013	19.0	5.3	3.0	2	1	0	2	2	2	2	Domain	of	unknown	function	DUF11
N_BRCA1_IG	PF16158.5	gi|55376287|ref|YP_134140.1|	-	0.00018	22.2	0.1	0.54	11.0	0.0	2.4	2	1	0	2	2	2	2	Ig-like	domain	from	next	to	BRCA1	gene
PHTB1_C	PF14728.6	gi|55376287|ref|YP_134140.1|	-	0.0003	20.0	0.2	0.0039	16.3	0.0	2.0	2	0	0	2	2	2	1	PTHB1	C-terminus
TRAP_beta	PF05753.14	gi|55376287|ref|YP_134140.1|	-	0.00062	19.2	4.1	0.18	11.2	0.4	2.5	2	1	0	2	2	2	2	Translocon-associated	protein	beta	(TRAPB)
Alpha_adaptinC2	PF02883.20	gi|55376287|ref|YP_134140.1|	-	0.0092	16.3	0.0	0.024	14.9	0.0	1.7	1	0	0	1	1	1	1	Adaptin	C-terminal	domain
Transglut_C	PF00927.22	gi|55376287|ref|YP_134140.1|	-	0.027	14.6	0.2	0.65	10.2	0.0	2.6	2	2	0	2	2	2	0	Transglutaminase	family,	C-terminal	ig	like	domain
FAS_meander	PF17951.1	gi|55376287|ref|YP_134140.1|	-	0.15	11.9	0.0	0.39	10.5	0.0	1.7	1	0	0	1	1	1	0	Fatty	acid	synthase	meander	beta	sheet	domain
MMPL	PF03176.15	gi|55376288|ref|YP_134141.1|	-	1.7e-34	119.3	26.4	6.7e-19	68.0	6.2	2.3	2	0	0	2	2	2	2	MMPL	family
Patched	PF02460.18	gi|55376288|ref|YP_134141.1|	-	1.1e-09	37.0	5.8	1.1e-09	37.0	5.8	2.5	2	1	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|55376288|ref|YP_134141.1|	-	1.6e-06	28.0	13.7	5.6e-05	23.0	4.9	2.5	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
TetR_C_15	PF17918.1	gi|55376288|ref|YP_134141.1|	-	0.35	11.6	3.1	0.44	11.3	1.7	1.9	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
DDE_Tnp_1	PF01609.21	gi|55376289|ref|YP_134142.1|	-	1.1e-22	80.7	0.0	1.6e-22	80.3	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|55376289|ref|YP_134142.1|	-	0.00059	20.1	0.1	0.0011	19.2	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
TrmB	PF01978.19	gi|55376290|ref|YP_134143.1|	-	3e-19	68.7	0.0	1.3e-18	66.6	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|55376290|ref|YP_134143.1|	-	0.033	14.0	0.0	0.093	12.5	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|55376290|ref|YP_134143.1|	-	0.04	13.8	0.1	0.1	12.5	0.0	1.7	2	0	0	2	2	2	0	MarR	family
MarR	PF01047.22	gi|55376290|ref|YP_134143.1|	-	0.14	12.1	0.1	0.37	10.8	0.0	1.8	2	0	0	2	2	2	0	MarR	family
Phage_integrase	PF00589.22	gi|55376294|ref|YP_134147.1|	-	1.3e-05	25.0	0.0	3e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase	family
DUF772	PF05598.11	gi|55376295|ref|YP_134148.1|	-	6.3e-07	29.3	0.0	1.9e-06	27.8	0.0	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_4	PF13701.6	gi|55376295|ref|YP_134148.1|	-	0.0006	18.2	1.3	0.0011	17.3	0.4	2.0	2	1	0	2	2	2	1	Transposase	DDE	domain	group	1
Trehalase_Ca-bi	PF07492.11	gi|55376295|ref|YP_134148.1|	-	2.2	8.1	6.1	0.15	11.8	0.4	2.0	2	0	0	2	2	2	0	Neutral	trehalase	Ca2+	binding	domain
AAA_31	PF13614.6	gi|55376296|ref|YP_134149.1|	-	2.2e-42	145.0	0.0	3.1e-42	144.5	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|55376296|ref|YP_134149.1|	-	1.9e-14	53.8	0.0	2.3e-14	53.6	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|55376296|ref|YP_134149.1|	-	4.6e-11	42.6	0.9	2.3e-10	40.4	0.9	1.9	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|55376296|ref|YP_134149.1|	-	8.1e-09	35.1	0.1	1e-06	28.3	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|55376296|ref|YP_134149.1|	-	6.6e-06	25.8	0.0	0.0001	21.8	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|55376296|ref|YP_134149.1|	-	8.2e-06	25.5	0.1	2.8e-05	23.7	0.1	1.8	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|55376296|ref|YP_134149.1|	-	1.8e-05	24.1	0.2	4.8e-05	22.7	0.2	1.9	1	1	0	1	1	1	1	Anion-transporting	ATPase
MeaB	PF03308.16	gi|55376296|ref|YP_134149.1|	-	0.011	14.7	0.1	0.045	12.7	0.0	1.8	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
CLP1_P	PF16575.5	gi|55376296|ref|YP_134149.1|	-	0.017	14.9	0.0	0.033	14.0	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DDE_Tnp_IS240	PF13610.6	gi|55376299|ref|YP_134152.1|	-	6.7e-21	75.0	0.1	9.6e-21	74.5	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|55376299|ref|YP_134152.1|	-	1.3e-06	28.1	1.7	2.8e-06	27.0	1.7	1.6	1	1	0	1	1	1	1	Integrase	core	domain
rve	PF00665.26	gi|55376299|ref|YP_134152.1|	-	0.0017	18.5	0.2	0.0029	17.8	0.2	1.5	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.10	gi|55376299|ref|YP_134152.1|	-	0.0097	15.9	1.4	0.2	11.7	0.0	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
DnaT	PF17948.1	gi|55376299|ref|YP_134152.1|	-	0.034	13.8	2.2	0.063	13.0	2.2	1.5	1	0	0	1	1	1	0	DnaT	DNA-binding	domain
PIN_4	PF13638.6	gi|55376300|ref|YP_134153.1|	-	0.068	13.5	0.0	0.096	13.0	0.0	1.2	1	0	0	1	1	1	0	PIN	domain
Peptidase_M41	PF01434.18	gi|55376300|ref|YP_134153.1|	-	0.14	11.9	0.0	0.2	11.5	0.0	1.1	1	0	0	1	1	1	0	Peptidase	family	M41
TrmB	PF01978.19	gi|55376301|ref|YP_134154.1|	-	1.2e-08	34.7	0.1	3.1e-08	33.4	0.0	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|55376301|ref|YP_134154.1|	-	0.0011	18.8	1.1	0.0023	17.7	0.0	2.2	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|55376301|ref|YP_134154.1|	-	0.033	14.5	0.0	0.06	13.7	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_DeoR	PF08220.12	gi|55376301|ref|YP_134154.1|	-	0.041	13.6	0.1	0.083	12.7	0.1	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
F-112	PF09645.10	gi|55376301|ref|YP_134154.1|	-	0.18	11.9	0.0	0.31	11.2	0.0	1.4	1	0	0	1	1	1	0	F-112	protein
DUF1970	PF09301.10	gi|55376302|ref|YP_134155.1|	-	0.004	17.4	0.1	0.0082	16.4	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1970)
Mucin	PF01456.17	gi|55376302|ref|YP_134155.1|	-	0.43	10.6	9.0	0.041	13.9	4.2	1.6	2	0	0	2	2	2	0	Mucin-like	glycoprotein
DUF4404	PF14357.6	gi|55376303|ref|YP_134156.1|	-	0.13	12.9	0.3	0.49	11.1	0.3	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4404)
Cdc6_C	PF09079.11	gi|55376304|ref|YP_134157.1|	-	1.1e-19	70.1	0.1	4.5e-19	68.2	0.1	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|55376304|ref|YP_134157.1|	-	8e-11	42.4	0.0	2.5e-10	40.8	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|55376304|ref|YP_134157.1|	-	2.8e-09	37.6	0.1	5.6e-08	33.3	0.0	2.7	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|55376304|ref|YP_134157.1|	-	5.6e-07	30.1	0.0	2.2e-06	28.1	0.0	2.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|55376304|ref|YP_134157.1|	-	0.00019	21.5	0.0	0.00032	20.7	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|55376304|ref|YP_134157.1|	-	0.00074	19.5	0.0	0.0014	18.6	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
DUF815	PF05673.13	gi|55376304|ref|YP_134157.1|	-	0.0045	16.2	0.0	0.0075	15.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|55376304|ref|YP_134157.1|	-	0.0074	15.7	0.0	0.013	14.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|55376304|ref|YP_134157.1|	-	0.012	14.8	0.0	0.026	13.7	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
AAA_5	PF07728.14	gi|55376304|ref|YP_134157.1|	-	0.022	14.8	0.0	0.11	12.6	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|55376304|ref|YP_134157.1|	-	0.024	15.2	0.1	0.2	12.2	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|55376304|ref|YP_134157.1|	-	0.025	14.9	0.0	0.046	14.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Pox_D5	PF03288.16	gi|55376304|ref|YP_134157.1|	-	0.028	14.9	0.0	0.063	13.8	0.0	1.5	1	0	0	1	1	1	0	Poxvirus	D5	protein-like
AAA_25	PF13481.6	gi|55376304|ref|YP_134157.1|	-	0.032	13.8	0.0	2.8	7.5	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|55376304|ref|YP_134157.1|	-	0.043	13.3	0.0	0.075	12.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Microtub_bd	PF16796.5	gi|55376304|ref|YP_134157.1|	-	0.11	12.4	0.0	0.4	10.6	0.0	1.9	2	0	0	2	2	2	0	Microtubule	binding
RsgA_GTPase	PF03193.16	gi|55376304|ref|YP_134157.1|	-	0.15	11.9	0.0	0.42	10.5	0.0	1.8	1	0	0	1	1	1	0	RsgA	GTPase
TsaE	PF02367.17	gi|55376304|ref|YP_134157.1|	-	0.16	12.0	0.0	0.32	11.0	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
bZIP_2	PF07716.15	gi|55376305|ref|YP_134158.1|	-	0.00047	20.2	1.0	0.0011	19.0	1.0	1.7	1	0	0	1	1	1	1	Basic	region	leucine	zipper
YabA	PF06156.13	gi|55376305|ref|YP_134158.1|	-	0.0012	19.5	0.1	0.0012	19.5	0.1	2.4	3	1	0	3	3	2	1	Initiation	control	protein	YabA
TSC22	PF01166.18	gi|55376305|ref|YP_134158.1|	-	0.002	18.4	0.7	0.0071	16.6	0.7	1.9	1	0	0	1	1	1	1	TSC-22/dip/bun	family
ZapB	PF06005.12	gi|55376305|ref|YP_134158.1|	-	0.0028	18.1	0.2	0.0028	18.1	0.2	2.1	3	0	0	3	3	1	1	Cell	division	protein	ZapB
bZIP_1	PF00170.21	gi|55376305|ref|YP_134158.1|	-	0.003	17.6	0.5	0.0072	16.4	0.5	1.7	1	0	0	1	1	1	1	bZIP	transcription	factor
Trimer_CC	PF08954.11	gi|55376305|ref|YP_134158.1|	-	0.0053	16.3	2.2	0.014	14.9	2.2	1.7	1	0	0	1	1	1	1	Trimerisation	motif
SlyX	PF04102.12	gi|55376305|ref|YP_134158.1|	-	0.033	14.8	0.5	0.2	12.3	0.2	2.4	2	0	0	2	2	2	0	SlyX
Herpes_UL6	PF01763.16	gi|55376305|ref|YP_134158.1|	-	0.053	12.0	0.0	0.082	11.4	0.0	1.2	1	0	0	1	1	1	0	Herpesvirus	UL6	like
ATLF	PF07737.11	gi|55376305|ref|YP_134158.1|	-	0.055	12.8	0.0	0.1	11.9	0.0	1.4	1	0	0	1	1	1	0	Anthrax	toxin	lethal	factor,	N-	and	C-terminal	domain
DivIVA	PF05103.13	gi|55376305|ref|YP_134158.1|	-	0.062	13.4	0.3	0.062	13.4	0.3	2.8	3	0	0	3	3	3	0	DivIVA	protein
FlaC_arch	PF05377.11	gi|55376305|ref|YP_134158.1|	-	0.076	13.4	0.5	0.23	11.9	0.5	1.8	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.15	gi|55376305|ref|YP_134158.1|	-	0.077	12.8	0.8	0.16	11.8	0.8	1.5	1	0	0	1	1	1	0	Septum	formation	initiator
Shugoshin_N	PF07558.11	gi|55376305|ref|YP_134158.1|	-	0.097	12.6	0.3	0.22	11.4	0.3	1.6	1	0	0	1	1	1	0	Shugoshin	N-terminal	coiled-coil	region
VGPC1_C	PF16799.5	gi|55376305|ref|YP_134158.1|	-	0.13	12.2	0.3	0.38	10.8	0.3	1.8	1	0	0	1	1	1	0	C-terminal	membrane-localisation	domain	of	ion-channel,	VCN1
JIP_LZII	PF16471.5	gi|55376305|ref|YP_134158.1|	-	0.14	12.4	3.0	0.19	11.9	1.2	2.2	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
Ax_dynein_light	PF10211.9	gi|55376305|ref|YP_134158.1|	-	0.21	11.5	2.9	0.23	11.4	0.4	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Leu_zip	PF15294.6	gi|55376305|ref|YP_134158.1|	-	0.3	10.6	8.4	0.47	9.9	0.3	2.5	3	0	0	3	3	3	0	Leucine	zipper
Spc24	PF08286.11	gi|55376305|ref|YP_134158.1|	-	0.58	10.4	2.9	0.43	10.9	0.3	2.0	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
WD40_alt	PF14077.6	gi|55376305|ref|YP_134158.1|	-	5.7	6.9	5.6	14	5.6	2.2	2.4	1	1	1	2	2	2	0	Alternative	WD40	repeat	motif
Thymopoietin	PF08198.11	gi|55376308|ref|YP_134161.1|	-	0.028	14.0	0.3	0.046	13.3	0.3	1.3	1	0	0	1	1	1	0	Thymopoietin	protein
ParE_toxin	PF05016.15	gi|55376309|ref|YP_134162.1|	-	7.6e-05	23.3	0.2	9.2e-05	23.0	0.2	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
HTH_33	PF13592.6	gi|55376310|ref|YP_134163.1|	-	3.3e-05	23.4	0.0	5.8e-05	22.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_Tnp_Tc3_2	PF01498.18	gi|55376310|ref|YP_134163.1|	-	6.2e-05	23.2	0.0	0.00015	21.9	0.0	1.6	1	1	1	2	2	2	1	Transposase
HTH_32	PF13565.6	gi|55376310|ref|YP_134163.1|	-	0.0015	19.1	0.0	0.003	18.1	0.0	1.5	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|55376310|ref|YP_134163.1|	-	0.0024	17.6	0.0	0.0057	16.4	0.0	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_12	PF08461.10	gi|55376310|ref|YP_134163.1|	-	0.016	15.1	0.0	0.056	13.4	0.0	1.9	2	1	1	3	3	3	0	Ribonuclease	R	winged-helix	domain
HTH_28	PF13518.6	gi|55376310|ref|YP_134163.1|	-	0.023	14.8	0.0	0.044	13.9	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Mnd1	PF03962.15	gi|55376310|ref|YP_134163.1|	-	0.058	13.7	0.0	0.095	13.0	0.0	1.3	1	0	0	1	1	1	0	Mnd1	HTH	domain
GntR	PF00392.21	gi|55376310|ref|YP_134163.1|	-	0.069	12.8	0.0	2.1	8.1	0.0	2.7	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
TBPIP	PF07106.13	gi|55376310|ref|YP_134163.1|	-	0.095	12.6	0.0	0.36	10.8	0.0	1.8	2	0	0	2	2	2	0	TBPIP/Hop2	winged	helix	domain
PqqD	PF05402.12	gi|55376310|ref|YP_134163.1|	-	0.12	12.7	0.1	0.4	11.0	0.0	1.8	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
RQC	PF09382.10	gi|55376313|ref|YP_134166.1|	-	0.027	14.3	0.0	0.034	13.9	0.0	1.2	1	0	0	1	1	1	0	RQC	domain
PadR	PF03551.14	gi|55376313|ref|YP_134166.1|	-	0.049	13.6	0.0	0.062	13.3	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.6	gi|55376313|ref|YP_134166.1|	-	0.066	13.0	0.0	0.081	12.7	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Mrr_N	PF14338.6	gi|55376313|ref|YP_134166.1|	-	0.16	12.1	0.0	0.21	11.7	0.0	1.3	1	1	0	1	1	1	0	Mrr	N-terminal	domain
Rrf2	PF02082.20	gi|55376313|ref|YP_134166.1|	-	0.21	12.0	0.0	0.23	11.8	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
Peptidase_M64	PF09471.10	gi|55376314|ref|YP_134167.1|	-	0.011	15.3	0.0	0.013	15.0	0.0	1.1	1	0	0	1	1	1	0	IgA	Peptidase	M64
DDE_Tnp_IS240	PF13610.6	gi|55376316|ref|YP_134169.1|	-	1.3e-14	54.6	0.1	1.9e-14	54.1	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve	PF00665.26	gi|55376316|ref|YP_134169.1|	-	0.00043	20.5	0.1	0.0007	19.8	0.1	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS66	PF03050.14	gi|55376316|ref|YP_134169.1|	-	0.019	14.5	0.3	0.019	14.5	0.3	2.0	2	1	0	2	2	2	0	Transposase	IS66	family
DDE_3	PF13358.6	gi|55376316|ref|YP_134169.1|	-	0.11	12.2	0.0	0.33	10.7	0.0	1.8	1	1	0	1	1	1	0	DDE	superfamily	endonuclease
HTH_28	PF13518.6	gi|55376316|ref|YP_134169.1|	-	0.13	12.4	0.0	0.73	10.0	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
DDE_Tnp_1	PF01609.21	gi|55376317|ref|YP_134170.1|	-	7.8e-31	107.4	0.3	1e-30	107.0	0.3	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_4	PF13701.6	gi|55376317|ref|YP_134170.1|	-	0.011	14.0	0.1	0.024	12.9	0.0	1.5	1	1	0	1	1	1	0	Transposase	DDE	domain	group	1
DDE_Tnp_2	PF04693.12	gi|55376317|ref|YP_134170.1|	-	0.091	12.0	0.1	0.12	11.6	0.1	1.2	1	0	0	1	1	1	0	Archaeal	putative	transposase	ISC1217
DDE_Tnp_1	PF01609.21	gi|55376318|ref|YP_134171.1|	-	1.3e-08	34.7	0.1	2e-08	34.2	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|55376318|ref|YP_134171.1|	-	0.0016	18.4	0.0	0.0039	17.2	0.0	1.7	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DUF1989	PF09347.10	gi|55376318|ref|YP_134171.1|	-	0.014	15.0	0.2	0.022	14.4	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1989)
DUF3094	PF11293.8	gi|55376319|ref|YP_134172.1|	-	0.067	12.9	0.2	0.093	12.5	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3094)
DoxX	PF07681.12	gi|55376320|ref|YP_134173.1|	-	1.3e-11	45.0	8.6	1.3e-11	45.0	8.6	1.8	2	0	0	2	2	2	1	DoxX
HR_lesion	PF05514.11	gi|55376320|ref|YP_134173.1|	-	2.7e-05	24.4	1.4	0.0012	19.1	0.3	2.0	1	1	1	2	2	2	2	HR-like	lesion-inducing
SURF4	PF02077.15	gi|55376320|ref|YP_134173.1|	-	0.00014	21.6	0.5	0.0002	21.1	0.5	1.3	1	0	0	1	1	1	1	SURF4	family
DoxX_2	PF13564.6	gi|55376320|ref|YP_134173.1|	-	0.0045	17.1	10.5	0.0099	16.0	9.7	1.8	1	1	1	2	2	2	1	DoxX-like	family
DUF4064	PF13273.6	gi|55376320|ref|YP_134173.1|	-	0.26	11.6	9.9	1.7	9.0	9.9	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
Rab5ip	PF07019.12	gi|55376320|ref|YP_134173.1|	-	1.6	9.4	6.6	0.16	12.6	1.6	1.9	2	0	0	2	2	2	0	Rab5-interacting	protein	(Rab5ip)
DUF3040	PF11239.8	gi|55376320|ref|YP_134173.1|	-	3.2	8.1	12.2	0.066	13.5	3.2	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3040)
HNH_repeat	PF18780.1	gi|55376324|ref|YP_134177.1|	-	1.2e-09	37.8	0.3	6e-05	22.7	0.0	3.4	3	0	0	3	3	3	2	Homing	endonuclease	repeat
THF_DHG_CYH	PF00763.23	gi|55376324|ref|YP_134177.1|	-	3.2e-06	27.4	0.0	0.22	11.8	0.0	3.2	3	0	0	3	3	3	2	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
GRAS	PF03514.14	gi|55376324|ref|YP_134177.1|	-	0.00035	19.6	0.2	2.6	6.9	0.0	3.2	2	1	1	3	3	3	2	GRAS	domain	family
LcrG	PF07216.12	gi|55376324|ref|YP_134177.1|	-	0.00072	19.4	0.8	8.8	6.3	0.0	4.0	4	0	0	4	4	4	1	LcrG	protein
LexA_DNA_bind	PF01726.16	gi|55376324|ref|YP_134177.1|	-	0.00087	19.0	0.0	0.58	10.0	0.0	2.7	3	0	0	3	3	2	2	LexA	DNA	binding	domain
LIN52	PF10044.9	gi|55376324|ref|YP_134177.1|	-	0.002	18.8	0.0	22	5.8	0.0	3.7	2	1	2	4	4	4	0	Retinal	tissue	protein
LAGLIDADG_3	PF14528.6	gi|55376324|ref|YP_134177.1|	-	0.0033	17.7	0.0	9.2	6.7	0.0	3.7	4	0	0	4	4	4	1	LAGLIDADG-like	domain
Lipase3_N	PF03893.16	gi|55376324|ref|YP_134177.1|	-	0.0047	16.9	5.3	0.23	11.5	0.0	2.9	4	0	0	4	4	4	2	Lipase	3	N-terminal	region
B12-binding	PF02310.19	gi|55376324|ref|YP_134177.1|	-	0.013	15.5	0.1	0.69	10.0	0.0	2.7	3	0	0	3	3	3	0	B12	binding	domain
Snf7	PF03357.21	gi|55376324|ref|YP_134177.1|	-	0.016	14.8	4.2	0.9	9.1	0.1	3.5	4	0	0	4	4	4	0	Snf7
Cas_Cas1	PF01867.16	gi|55376324|ref|YP_134177.1|	-	0.023	13.8	0.1	7.4	5.6	0.0	3.1	1	1	1	3	3	3	0	CRISPR	associated	protein	Cas1
Ribosomal_S16	PF00886.19	gi|55376324|ref|YP_134177.1|	-	0.062	13.4	0.0	2.3	8.3	0.0	2.9	3	0	0	3	3	3	0	Ribosomal	protein	S16
RHH_1	PF01402.21	gi|55376324|ref|YP_134177.1|	-	0.085	12.8	7.1	33	4.6	0.1	4.3	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
SMC_ScpB	PF04079.16	gi|55376324|ref|YP_134177.1|	-	0.088	12.4	0.0	0.43	10.2	0.0	2.1	2	1	0	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
Ribosomal_L29	PF00831.23	gi|55376324|ref|YP_134177.1|	-	0.3	11.1	3.6	47	4.1	0.1	3.8	4	0	0	4	4	4	0	Ribosomal	L29	protein
DUF2508	PF10704.9	gi|55376324|ref|YP_134177.1|	-	0.31	11.2	2.5	34	4.7	0.1	3.8	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2508)
HSCB_C	PF07743.13	gi|55376324|ref|YP_134177.1|	-	0.38	11.3	6.6	7.6	7.1	0.2	3.5	4	0	0	4	4	3	0	HSCB	C-terminal	oligomerisation	domain
Usp	PF00582.26	gi|55376325|ref|YP_134178.1|	-	5e-31	108.1	0.1	5.7e-31	107.9	0.1	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF2808	PF10989.8	gi|55376326|ref|YP_134179.1|	-	0.054	13.5	2.1	1.5	8.8	0.3	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2808)
EF-hand_1	PF00036.32	gi|55376326|ref|YP_134179.1|	-	0.41	10.3	2.1	17	5.3	0.2	2.5	2	0	0	2	2	2	0	EF	hand
EF-hand_5	PF13202.6	gi|55376326|ref|YP_134179.1|	-	1	9.0	3.6	9.2	6.0	0.6	2.4	2	0	0	2	2	2	0	EF	hand
HTH_23	PF13384.6	gi|55376328|ref|YP_134181.1|	-	6.6e-12	44.9	0.1	2.9e-11	42.8	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|55376328|ref|YP_134181.1|	-	2.3e-09	37.1	0.5	6.2e-09	35.7	0.1	1.8	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|55376328|ref|YP_134181.1|	-	6.8e-07	29.3	1.0	3.3e-06	27.1	0.7	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_32	PF13565.6	gi|55376328|ref|YP_134181.1|	-	0.0083	16.7	2.3	0.033	14.8	1.3	2.0	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF746	PF05344.11	gi|55376328|ref|YP_134181.1|	-	0.013	15.3	0.0	0.036	13.9	0.0	1.7	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
HTH_31	PF13560.6	gi|55376328|ref|YP_134181.1|	-	0.29	11.5	4.5	0.45	10.9	0.6	2.6	2	1	1	3	3	3	0	Helix-turn-helix	domain
DDE_3	PF13358.6	gi|55376329|ref|YP_134182.1|	-	2.1e-16	60.0	0.0	5.3e-16	58.7	0.0	1.7	1	1	0	1	1	1	1	DDE	superfamily	endonuclease
HTH_33	PF13592.6	gi|55376329|ref|YP_134182.1|	-	7.9e-08	31.8	0.0	1.5e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
DDE_1	PF03184.19	gi|55376329|ref|YP_134182.1|	-	0.0025	17.5	0.0	0.0036	17.0	0.0	1.2	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|55376329|ref|YP_134182.1|	-	0.044	14.0	0.0	0.092	12.9	0.0	1.5	1	0	0	1	1	1	0	Integrase	core	domain
Lipase_GDSL_3	PF14606.6	gi|55376329|ref|YP_134182.1|	-	0.11	12.6	0.0	0.24	11.5	0.0	1.5	2	0	0	2	2	2	0	GDSL-like	Lipase/Acylhydrolase	family
DDE_Tnp_1	PF01609.21	gi|55376331|ref|YP_134184.1|	-	4.9e-07	29.6	0.1	6.8e-07	29.2	0.1	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
Ndc1_Nup	PF09531.10	gi|55376333|ref|YP_134186.1|	-	2.8	6.5	7.3	3.2	6.3	7.3	1.1	1	0	0	1	1	1	0	Nucleoporin	protein	Ndc1-Nup
Hamartin	PF04388.12	gi|55376333|ref|YP_134186.1|	-	4.9	5.7	10.2	5.4	5.6	10.2	1.1	1	0	0	1	1	1	0	Hamartin	protein
FAP	PF07174.11	gi|55376333|ref|YP_134186.1|	-	5	6.5	30.8	7.8	5.9	30.8	1.2	1	0	0	1	1	1	0	Fibronectin-attachment	protein	(FAP)
SOG2	PF10428.9	gi|55376333|ref|YP_134186.1|	-	5.7	6.0	12.4	6	5.9	12.4	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
AI-2E_transport	PF01594.16	gi|55376336|ref|YP_134189.1|	-	3.9e-20	72.3	34.1	2.3e-19	69.7	34.1	2.0	1	1	0	1	1	1	1	AI-2E	family	transporter
MMPL	PF03176.15	gi|55376337|ref|YP_134190.1|	-	9.2e-35	120.1	20.0	1.4e-22	80.0	6.6	2.3	2	0	0	2	2	2	2	MMPL	family
Patched	PF02460.18	gi|55376337|ref|YP_134190.1|	-	1.2e-09	36.9	23.8	1e-08	33.8	6.4	2.6	2	1	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|55376337|ref|YP_134190.1|	-	7.2e-06	25.9	19.0	1.3e-05	25.1	2.3	2.7	3	0	0	3	3	3	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
Proton_antipo_C	PF01010.19	gi|55376337|ref|YP_134190.1|	-	8.1	6.0	7.3	9.2	5.8	1.2	2.5	2	0	0	2	2	2	0	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
CARDB	PF07705.11	gi|55376338|ref|YP_134191.1|	-	2.8e-10	40.3	14.7	0.00019	21.6	0.2	5.0	4	1	1	5	5	5	3	CARDB
NPCBM_assoc	PF10633.9	gi|55376338|ref|YP_134191.1|	-	1.4e-09	38.0	8.7	0.0052	17.0	0.6	5.4	5	1	0	5	5	5	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|55376338|ref|YP_134191.1|	-	9.6e-05	22.6	15.7	2	8.8	0.1	5.0	3	3	0	3	3	3	3	Domain	of	unknown	function	DUF11
DUF4832	PF16116.5	gi|55376338|ref|YP_134191.1|	-	0.0029	17.5	0.0	0.37	10.6	0.0	3.4	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4832)
YtkA	PF13115.6	gi|55376338|ref|YP_134191.1|	-	0.016	15.8	4.1	6.3	7.5	0.1	4.4	4	2	2	6	6	6	0	YtkA-like
TRAP_alpha	PF03896.16	gi|55376338|ref|YP_134191.1|	-	0.017	14.4	0.0	0.45	9.7	0.0	2.4	2	0	0	2	2	2	0	Translocon-associated	protein	(TRAP),	alpha	subunit
Fn3-like	PF14310.6	gi|55376338|ref|YP_134191.1|	-	0.026	14.6	0.1	0.6	10.2	0.1	3.4	4	0	0	4	4	4	0	Fibronectin	type	III-like	domain
Gp5_C	PF06715.12	gi|55376338|ref|YP_134191.1|	-	0.043	14.0	1.9	4.5	7.6	0.1	3.3	2	0	0	2	2	2	0	Gp5	C-terminal	repeat	(3	copies)
FixG_C	PF11614.8	gi|55376338|ref|YP_134191.1|	-	0.14	12.4	1.1	11	6.2	0.0	4.0	2	2	3	5	5	5	0	IG-like	fold	at	C-terminal	of	FixG,	putative	oxidoreductase
DUF3592	PF12158.8	gi|55376338|ref|YP_134191.1|	-	3	7.9	6.0	2.2	8.4	0.2	3.3	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3592)
TetR_C_6	PF13977.6	gi|55376339|ref|YP_134192.1|	-	3.3e-11	43.4	0.0	5e-11	42.8	0.0	1.2	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|55376339|ref|YP_134192.1|	-	2.7e-09	36.7	0.6	6.3e-09	35.5	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|55376339|ref|YP_134192.1|	-	0.00076	19.7	0.0	0.0015	18.7	0.0	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|55376339|ref|YP_134192.1|	-	0.0027	17.8	0.1	0.0052	16.8	0.1	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|55376339|ref|YP_134192.1|	-	0.014	15.6	0.0	0.023	15.0	0.0	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|55376339|ref|YP_134192.1|	-	0.023	14.7	0.1	0.038	14.0	0.1	1.4	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
HTH_5	PF01022.20	gi|55376339|ref|YP_134192.1|	-	0.097	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sigma70_r4	PF04545.16	gi|55376339|ref|YP_134192.1|	-	0.1	12.1	0.1	0.25	10.9	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
MMPL	PF03176.15	gi|55376341|ref|YP_134194.1|	-	8.6e-44	149.8	3.2	6.9e-24	84.4	1.4	2.4	2	0	0	2	2	2	2	MMPL	family
ACR_tran	PF00873.19	gi|55376341|ref|YP_134194.1|	-	1.2e-09	36.5	6.6	5.9e-05	21.0	0.7	2.2	2	0	0	2	2	2	2	AcrB/AcrD/AcrF	family
Sterol-sensing	PF12349.8	gi|55376341|ref|YP_134194.1|	-	2e-08	34.2	0.0	2e-08	34.2	0.0	3.4	5	0	0	5	5	5	1	Sterol-sensing	domain	of	SREBP	cleavage-activation
Patched	PF02460.18	gi|55376341|ref|YP_134194.1|	-	0.029	12.4	13.0	0.043	11.9	7.0	2.6	3	0	0	3	3	3	0	Patched	family
SecD_SecF	PF02355.16	gi|55376341|ref|YP_134194.1|	-	0.094	12.1	8.4	0.017	14.5	2.0	2.7	2	1	0	2	2	2	0	Protein	export	membrane	protein
NPCBM_assoc	PF10633.9	gi|55376342|ref|YP_134195.1|	-	8.5e-18	64.4	17.0	9.3e-06	25.8	0.3	5.4	4	1	0	4	4	4	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.11	gi|55376342|ref|YP_134195.1|	-	5.6e-14	52.2	16.9	2.6e-05	24.4	2.5	4.3	3	2	0	4	4	4	3	CARDB
DUF11	PF01345.18	gi|55376342|ref|YP_134195.1|	-	3.4e-08	33.7	24.6	0.0016	18.7	5.9	5.2	4	2	1	5	5	5	2	Domain	of	unknown	function	DUF11
N_BRCA1_IG	PF16158.5	gi|55376342|ref|YP_134195.1|	-	6e-06	26.9	0.9	0.31	11.8	0.1	3.7	3	1	0	3	3	3	2	Ig-like	domain	from	next	to	BRCA1	gene
DUF4832	PF16116.5	gi|55376342|ref|YP_134195.1|	-	6.1e-05	23.0	0.3	0.13	12.1	0.0	2.9	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF4832)
Fn3-like	PF14310.6	gi|55376342|ref|YP_134195.1|	-	0.0005	20.1	1.5	0.72	10.0	0.1	4.2	4	0	0	4	4	4	1	Fibronectin	type	III-like	domain
DUF2969	PF11184.8	gi|55376342|ref|YP_134195.1|	-	0.0016	18.8	0.3	0.0086	16.5	0.3	2.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2969)
PHTB1_C	PF14728.6	gi|55376342|ref|YP_134195.1|	-	0.024	13.7	0.0	0.34	10.0	0.0	2.5	3	0	0	3	3	3	0	PTHB1	C-terminus
DUF1573	PF07610.11	gi|55376342|ref|YP_134195.1|	-	0.14	12.3	2.3	61	3.7	0.1	5.0	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1573)
YtkA	PF13115.6	gi|55376342|ref|YP_134195.1|	-	0.21	12.2	2.8	9.5	6.9	0.1	4.1	3	1	0	3	3	3	0	YtkA-like
TetR_N	PF00440.23	gi|55376343|ref|YP_134196.1|	-	3.6e-06	26.7	0.0	5.6e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
Sigma70_r4	PF04545.16	gi|55376343|ref|YP_134196.1|	-	0.0021	17.6	0.0	0.0039	16.7	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
UPF0122	PF04297.14	gi|55376343|ref|YP_134196.1|	-	0.0029	17.8	0.2	0.021	15.1	0.1	2.2	2	1	1	3	3	3	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Herpes_UL55	PF04537.12	gi|55376343|ref|YP_134196.1|	-	0.03	14.3	0.1	0.046	13.7	0.1	1.2	1	0	0	1	1	1	0	Herpesvirus	UL55	protein
MNR	PF15718.5	gi|55376343|ref|YP_134196.1|	-	0.059	11.5	0.2	0.067	11.3	0.2	1.0	1	0	0	1	1	1	0	Protein	moonraker
DDE_Tnp_1	PF01609.21	gi|55376344|ref|YP_134197.1|	-	2.3e-21	76.4	2.9	6.1e-21	75.1	2.9	1.6	1	1	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_3	PF13612.6	gi|55376344|ref|YP_134197.1|	-	0.00092	19.2	0.0	0.0014	18.6	0.0	1.2	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF1989	PF09347.10	gi|55376344|ref|YP_134197.1|	-	0.01	15.5	0.2	0.015	14.9	0.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1989)
DUF772	PF05598.11	gi|55376344|ref|YP_134197.1|	-	0.011	15.8	0.0	0.027	14.5	0.0	1.7	1	0	0	1	1	1	0	Transposase	domain	(DUF772)
DDE_Tnp_1_2	PF13586.6	gi|55376344|ref|YP_134197.1|	-	0.035	14.5	0.1	0.074	13.4	0.1	1.6	1	0	0	1	1	1	0	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|55376344|ref|YP_134197.1|	-	0.057	13.6	2.0	0.085	13.1	0.2	2.1	1	1	1	2	2	2	0	Transposase	DDE	domain
NICE-3	PF07406.11	gi|55376344|ref|YP_134197.1|	-	0.075	13.0	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	NICE-3	protein
DEDD_Tnp_IS110	PF01548.17	gi|55376346|ref|YP_134199.1|	-	0.0011	18.9	0.1	0.0021	18.0	0.0	1.5	2	0	0	2	2	2	1	Transposase
DUF2312	PF10073.9	gi|55376346|ref|YP_134199.1|	-	0.043	13.4	0.4	0.093	12.4	0.4	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
ZapB	PF06005.12	gi|55376346|ref|YP_134199.1|	-	0.07	13.6	1.1	7.5	7.1	0.6	2.1	2	0	0	2	2	2	0	Cell	division	protein	ZapB
Transposase_20	PF02371.16	gi|55376347|ref|YP_134200.1|	-	1.4e-22	79.8	0.0	2.1e-22	79.3	0.0	1.3	1	0	0	1	1	1	1	Transposase	IS116/IS110/IS902	family
DDE_Tnp_1	PF01609.21	gi|55376348|ref|YP_134201.1|	-	8.5e-13	48.4	4.2	2e-11	44.0	4.2	2.0	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF4625	PF15418.6	gi|55376350|ref|YP_134203.1|	-	3.3e-05	24.1	9.3	0.22	11.8	0.4	5.9	4	1	2	6	6	6	2	Domain	of	unknown	function	(DUF4625)
Big_7	PF17957.1	gi|55376350|ref|YP_134203.1|	-	0.00035	21.3	4.5	0.00035	21.3	4.5	7.6	5	3	2	7	7	7	4	Bacterial	Ig	domain
Cadherin-like	PF12733.7	gi|55376350|ref|YP_134203.1|	-	0.0065	17.0	1.6	0.0065	17.0	1.6	6.1	2	1	3	5	5	5	2	Cadherin-like	beta	sandwich	domain
HYR	PF02494.16	gi|55376350|ref|YP_134203.1|	-	0.0074	16.6	5.1	2.5	8.5	0.1	4.2	3	1	0	3	3	3	2	HYR	domain
Laminin_G_1	PF00054.23	gi|55376350|ref|YP_134203.1|	-	0.41	10.9	3.0	2.4	8.4	0.1	3.5	3	1	1	4	4	4	0	Laminin	G	domain
Big_8	PF17961.1	gi|55376350|ref|YP_134203.1|	-	6.7	6.9	14.6	0.43	10.8	0.3	4.2	3	2	2	5	5	5	0	Bacterial	Ig	domain
FMN_dh	PF01070.18	gi|55376353|ref|YP_134206.1|	-	0.21	10.6	0.5	0.22	10.5	0.5	1.1	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
AAA_22	PF13401.6	gi|55376357|ref|YP_134210.1|	-	0.0003	21.1	1.4	0.017	15.4	0.3	2.9	3	0	0	3	3	3	1	AAA	domain
CagE_TrbE_VirB	PF03135.14	gi|55376357|ref|YP_134210.1|	-	0.0083	16.2	0.0	0.019	15.0	0.0	1.5	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
Zot	PF05707.12	gi|55376357|ref|YP_134210.1|	-	0.0097	15.6	0.1	0.032	13.9	0.0	1.8	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_10	PF12846.7	gi|55376357|ref|YP_134210.1|	-	0.023	13.6	0.0	5.5	5.8	0.0	2.3	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|55376357|ref|YP_134210.1|	-	0.045	14.1	0.4	1.1	9.6	0.1	2.8	2	0	0	2	2	2	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|55376357|ref|YP_134210.1|	-	0.075	12.0	0.0	0.15	11.0	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
GAT	PF03127.14	gi|55376357|ref|YP_134210.1|	-	0.21	11.9	2.3	4.5	7.6	0.1	3.6	3	0	0	3	3	3	0	GAT	domain
MgtE_N	PF03448.17	gi|55376357|ref|YP_134210.1|	-	0.76	10.4	4.6	2	9.1	0.9	3.4	4	0	0	4	4	4	0	MgtE	intracellular	N	domain
DUF1778	PF08681.11	gi|55376358|ref|YP_134211.1|	-	0.012	15.5	0.4	0.032	14.1	0.2	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1778)
DUF2764	PF10962.8	gi|55376358|ref|YP_134211.1|	-	0.02	14.4	0.1	0.026	14.0	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2764)
ATP-grasp_6	PF18419.1	gi|55376358|ref|YP_134211.1|	-	0.043	13.5	0.2	0.11	12.1	0.1	1.8	1	1	0	1	1	1	0	ATP-grasp-like	domain
EF-G-binding_N	PF07299.11	gi|55376359|ref|YP_134212.1|	-	0.15	12.6	3.2	0.52	10.9	0.8	2.3	2	1	0	2	2	2	0	Elongation	factor	G-binding	protein,	N-terminal
Relaxase	PF03432.14	gi|55376360|ref|YP_134213.1|	-	0.039	13.6	3.2	0.11	12.0	3.2	1.8	1	1	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
DUF406	PF04175.12	gi|55376360|ref|YP_134213.1|	-	3.3	8.2	5.9	0.68	10.5	0.7	2.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF406)
TrwB_AAD_bind	PF10412.9	gi|55376361|ref|YP_134214.1|	-	1.2e-31	110.0	0.0	1.7e-31	109.5	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|55376361|ref|YP_134214.1|	-	1.6e-11	44.2	0.0	3.8e-11	43.1	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|55376361|ref|YP_134214.1|	-	3.3e-06	27.4	0.0	0.00062	20.1	0.0	2.5	1	1	1	2	2	2	1	AAA	domain
ABC_tran	PF00005.27	gi|55376361|ref|YP_134214.1|	-	0.0011	19.5	0.0	0.0029	18.1	0.0	1.8	1	0	0	1	1	1	1	ABC	transporter
T4SS-DNA_transf	PF02534.14	gi|55376361|ref|YP_134214.1|	-	0.0015	17.4	0.0	0.0025	16.7	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
DUF87	PF01935.17	gi|55376361|ref|YP_134214.1|	-	0.018	15.1	0.0	0.041	14.0	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_10	PF12846.7	gi|55376361|ref|YP_134214.1|	-	0.021	13.7	0.0	0.064	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|55376361|ref|YP_134214.1|	-	0.03	14.7	0.1	0.38	11.1	0.1	2.5	1	1	0	1	1	1	0	AAA	ATPase	domain
ATPase	PF06745.13	gi|55376361|ref|YP_134214.1|	-	0.045	13.1	0.0	0.16	11.3	0.0	1.8	2	0	0	2	2	2	0	KaiC
AAA_30	PF13604.6	gi|55376361|ref|YP_134214.1|	-	0.074	12.8	0.0	0.22	11.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|55376361|ref|YP_134214.1|	-	0.09	13.3	0.0	0.64	10.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|55376361|ref|YP_134214.1|	-	0.16	11.5	0.0	0.31	10.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
tRNA_anti-codon	PF01336.25	gi|55376365|ref|YP_134218.1|	-	0.00088	19.2	0.1	0.0017	18.3	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|55376365|ref|YP_134218.1|	-	0.0019	18.1	0.0	0.0052	16.7	0.0	1.7	2	0	0	2	2	2	1	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|55376365|ref|YP_134218.1|	-	0.15	11.8	0.0	0.28	10.9	0.0	1.3	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
DUF4089	PF13318.6	gi|55376370|ref|YP_134223.1|	-	0.15	12.5	0.0	0.27	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4089)
Mrr_cat	PF04471.12	gi|55376371|ref|YP_134224.1|	-	0.00046	20.2	0.0	0.00099	19.1	0.0	1.6	1	0	0	1	1	1	1	Restriction	endonuclease
TOBE_2	PF08402.10	gi|55376372|ref|YP_134225.1|	-	0.039	14.1	0.6	0.22	11.7	0.6	1.9	1	1	1	2	2	2	0	TOBE	domain
DUF4143	PF13635.6	gi|55376375|ref|YP_134228.1|	-	0.12	12.5	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4143)
HEPN_Apea	PF18739.1	gi|55376377|ref|YP_134230.1|	-	1.5e-08	35.0	0.0	7e-08	32.8	0.0	2.0	2	1	0	2	2	2	1	Apea-like	HEPN
Activator-TraM	PF11657.8	gi|55376377|ref|YP_134230.1|	-	0.11	12.3	2.4	0.14	12.0	0.2	2.1	1	1	0	2	2	2	0	Transcriptional	activator	TraM
HypA	PF01155.19	gi|55376378|ref|YP_134231.1|	-	0.013	15.5	6.4	0.77	9.8	0.2	2.3	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|55376378|ref|YP_134231.1|	-	0.029	15.1	5.5	0.14	12.9	0.4	2.5	2	1	0	2	2	2	0	zinc-ribbon	family
DZR	PF12773.7	gi|55376378|ref|YP_134231.1|	-	0.049	13.7	1.8	0.049	13.7	1.8	2.8	2	1	0	2	2	2	0	Double	zinc	ribbon
DUF4596	PF15363.6	gi|55376378|ref|YP_134231.1|	-	0.05	13.8	0.2	0.16	12.2	0.2	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4596)
Baculo_LEF5_C	PF11792.8	gi|55376378|ref|YP_134231.1|	-	0.18	11.5	0.0	0.18	11.5	0.0	2.5	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zinc-ribbons_6	PF07191.12	gi|55376378|ref|YP_134231.1|	-	0.25	11.3	8.0	2.1	8.4	0.7	2.3	2	0	0	2	2	2	0	zinc-ribbons
ADD_ATRX	PF17981.1	gi|55376378|ref|YP_134231.1|	-	1.4	8.8	5.3	1.9	8.4	0.1	2.7	3	0	0	3	3	3	0	Cysteine	Rich	ADD	domain
TackOD1	PF18551.1	gi|55376378|ref|YP_134231.1|	-	3.5	7.3	6.0	6.5	6.4	0.1	2.8	2	1	0	2	2	2	0	Thaumarchaeal	output	domain	1
zf_UBZ	PF18439.1	gi|55376378|ref|YP_134231.1|	-	5.3	6.7	12.1	1.8	8.3	1.6	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
RNHCP	PF12647.7	gi|55376378|ref|YP_134231.1|	-	8.6	6.4	8.4	9.5	6.3	0.3	3.1	2	1	1	3	3	3	0	RNHCP	domain
zinc_ribbon_2	PF13240.6	gi|55376378|ref|YP_134231.1|	-	9	6.2	15.0	0.42	10.4	2.5	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.6	gi|55376378|ref|YP_134231.1|	-	9.2	6.2	11.6	0.15	11.9	1.4	2.5	3	0	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
MazE_antitoxin	PF04014.18	gi|55376380|ref|YP_134233.1|	-	2.1e-10	40.3	0.0	2.7e-10	39.9	0.0	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|55376380|ref|YP_134233.1|	-	3.5e-05	24.2	0.0	4.8e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
EutQ	PF06249.12	gi|55376380|ref|YP_134233.1|	-	0.02	14.7	0.0	0.02	14.6	0.0	1.1	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
DUF1905	PF08922.11	gi|55376380|ref|YP_134233.1|	-	0.042	13.9	0.0	0.059	13.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
Fringe	PF02434.16	gi|55376380|ref|YP_134233.1|	-	0.18	11.2	0.0	0.19	11.1	0.0	1.1	1	0	0	1	1	1	0	Fringe-like
PIN	PF01850.21	gi|55376381|ref|YP_134234.1|	-	4e-14	53.2	0.2	4.5e-14	53.0	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
DDE_Tnp_ISAZ013	PF07592.11	gi|55376381|ref|YP_134234.1|	-	0.019	14.0	0.0	0.026	13.5	0.0	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
PIN_3	PF13470.6	gi|55376381|ref|YP_134234.1|	-	0.046	14.5	0.1	0.087	13.6	0.1	1.3	1	1	0	1	1	1	0	PIN	domain
DUF2800	PF10926.8	gi|55376382|ref|YP_134235.1|	-	0.0013	18.1	0.1	0.0022	17.3	0.1	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2800)
TSC22	PF01166.18	gi|55376382|ref|YP_134235.1|	-	0.0054	17.0	2.7	0.032	14.6	1.4	2.4	2	0	0	2	2	2	1	TSC-22/dip/bun	family
ABC_tran_CTD	PF16326.5	gi|55376382|ref|YP_134235.1|	-	0.039	14.2	5.4	0.039	14.2	5.4	2.1	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
DivIC	PF04977.15	gi|55376382|ref|YP_134235.1|	-	0.082	12.7	0.4	0.082	12.7	0.4	2.1	3	0	0	3	3	3	0	Septum	formation	initiator
Spc7	PF08317.11	gi|55376382|ref|YP_134235.1|	-	0.16	10.8	5.3	0.31	9.9	5.3	1.5	1	0	0	1	1	1	0	Spc7	kinetochore	protein
PadR	PF03551.14	gi|55376385|ref|YP_134238.1|	-	4.1e-10	39.5	0.1	4.7e-10	39.3	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|55376385|ref|YP_134238.1|	-	0.043	13.7	0.0	0.058	13.3	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FUR	PF01475.19	gi|55376385|ref|YP_134238.1|	-	0.065	13.4	0.0	0.075	13.2	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF4423	PF14394.6	gi|55376385|ref|YP_134238.1|	-	0.071	12.8	0.0	0.08	12.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Cdc6_C	PF09079.11	gi|55376385|ref|YP_134238.1|	-	0.096	12.7	0.1	0.19	11.7	0.1	1.5	1	1	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
AAA_31	PF13614.6	gi|55376387|ref|YP_134240.1|	-	2.5e-34	118.7	0.0	3.2e-34	118.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|55376387|ref|YP_134240.1|	-	8.9e-18	64.6	0.0	1.1e-17	64.3	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|55376387|ref|YP_134240.1|	-	3.8e-08	33.1	0.1	5.7e-06	26.0	0.0	2.2	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|55376387|ref|YP_134240.1|	-	2.4e-07	30.3	0.1	9.7e-05	21.8	0.1	2.1	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|55376387|ref|YP_134240.1|	-	1.7e-06	27.5	0.4	4e-06	26.2	0.4	1.7	1	1	0	1	1	1	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|55376387|ref|YP_134240.1|	-	2.3e-06	27.3	0.1	3.4e-05	23.5	0.1	2.3	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|55376387|ref|YP_134240.1|	-	2.5e-06	27.2	0.0	9e-06	25.3	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|55376387|ref|YP_134240.1|	-	0.0031	16.8	0.2	0.0085	15.4	0.1	1.7	1	1	1	2	2	2	1	VirC1	protein
AAA_16	PF13191.6	gi|55376388|ref|YP_134241.1|	-	3.7e-11	43.7	0.5	1.1e-10	42.2	0.1	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|55376388|ref|YP_134241.1|	-	7.7e-10	39.3	0.0	2.9e-09	37.5	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|55376388|ref|YP_134241.1|	-	1.1e-09	38.1	0.0	2.3e-09	37.1	0.0	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|55376388|ref|YP_134241.1|	-	5.1e-09	36.5	0.0	1.1e-08	35.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|55376388|ref|YP_134241.1|	-	3.4e-06	26.4	0.0	6.7e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|55376388|ref|YP_134241.1|	-	6.5e-05	22.4	0.0	0.00011	21.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|55376388|ref|YP_134241.1|	-	0.001	19.1	0.0	0.0016	18.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_30	PF13604.6	gi|55376388|ref|YP_134241.1|	-	0.0012	18.6	0.0	0.0097	15.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.26	gi|55376388|ref|YP_134241.1|	-	0.0022	17.7	0.0	0.0039	16.9	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_29	PF13555.6	gi|55376388|ref|YP_134241.1|	-	0.0079	15.9	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
PIF1	PF05970.14	gi|55376388|ref|YP_134241.1|	-	0.033	13.4	0.0	0.072	12.2	0.0	1.5	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_7	PF12775.7	gi|55376388|ref|YP_134241.1|	-	0.036	13.6	0.0	0.26	10.8	0.0	2.1	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_assoc_2	PF16193.5	gi|55376388|ref|YP_134241.1|	-	0.037	14.3	0.8	0.12	12.7	0.1	2.2	2	0	0	2	2	2	0	AAA	C-terminal	domain
Mg_chelatase	PF01078.21	gi|55376388|ref|YP_134241.1|	-	0.052	12.9	0.0	0.3	10.4	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.12	gi|55376388|ref|YP_134241.1|	-	0.087	12.7	0.0	0.28	11.1	0.0	1.8	2	0	0	2	2	2	0	NACHT	domain
DUF4393	PF14337.6	gi|55376388|ref|YP_134241.1|	-	0.11	12.3	0.0	0.19	11.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4393)
NB-ARC	PF00931.22	gi|55376388|ref|YP_134241.1|	-	0.12	11.6	0.0	0.21	10.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
ABC_tran	PF00005.27	gi|55376388|ref|YP_134241.1|	-	0.13	12.8	0.1	0.89	10.1	0.1	2.5	1	1	0	1	1	1	0	ABC	transporter
AAA_5	PF07728.14	gi|55376388|ref|YP_134241.1|	-	0.13	12.2	0.0	0.46	10.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|55376388|ref|YP_134241.1|	-	0.14	12.6	0.0	0.31	11.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DDE_Tnp_IS240	PF13610.6	gi|55376389|ref|YP_134242.1|	-	1.1e-21	77.6	0.2	1.5e-21	77.1	0.2	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|55376389|ref|YP_134242.1|	-	1.2e-06	28.1	3.1	2.8e-06	27.0	3.1	1.6	1	1	0	1	1	1	1	Integrase	core	domain
rve	PF00665.26	gi|55376389|ref|YP_134242.1|	-	0.0018	18.5	0.2	0.0038	17.4	0.1	1.6	1	1	0	1	1	1	1	Integrase	core	domain
DnaT	PF17948.1	gi|55376389|ref|YP_134242.1|	-	0.0063	16.2	2.2	0.012	15.3	2.2	1.5	1	0	0	1	1	1	1	DnaT	DNA-binding	domain
DUF2384	PF09722.10	gi|55376389|ref|YP_134242.1|	-	0.0085	16.1	1.7	0.18	11.9	0.1	3.0	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
DDE_Tnp_1	PF01609.21	gi|55376390|ref|YP_134243.1|	-	7.3e-14	51.9	0.0	8.9e-14	51.6	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|55376390|ref|YP_134243.1|	-	0.00043	20.5	0.0	0.00054	20.2	0.0	1.1	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1	PF01609.21	gi|55376391|ref|YP_134244.1|	-	0.00082	19.1	0.0	0.0013	18.4	0.0	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
Vesiculo_matrix	PF06326.12	gi|55376391|ref|YP_134244.1|	-	0.14	11.9	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Vesiculovirus	matrix	protein
Y1_Tnp	PF01797.16	gi|55376393|ref|YP_134246.1|	-	2.4e-37	127.7	0.0	2.7e-37	127.6	0.0	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
IQ_SEC7_PH	PF16453.5	gi|55376393|ref|YP_134246.1|	-	0.01	15.8	0.0	0.015	15.3	0.0	1.4	1	1	0	1	1	1	0	PH	domain
Glyco_hydro_66	PF13199.6	gi|55376393|ref|YP_134246.1|	-	0.052	12.2	0.0	0.087	11.5	0.0	1.3	1	1	0	1	1	1	0	Glycosyl	hydrolase	family	66
OrfB_IS605	PF01385.19	gi|55376394|ref|YP_134247.1|	-	1.2e-23	83.6	0.1	2.4e-23	82.6	0.1	1.4	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|55376394|ref|YP_134247.1|	-	1.1e-19	70.1	0.2	1.1e-19	70.1	0.2	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.8	gi|55376394|ref|YP_134247.1|	-	1.6e-07	30.7	0.3	2.9e-07	29.9	0.3	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn-ribbon_8	PF09723.10	gi|55376394|ref|YP_134247.1|	-	8.1	6.7	9.5	59	3.9	5.8	2.8	2	1	0	2	2	2	0	Zinc	ribbon	domain
OrfB_IS605	PF01385.19	gi|55376395|ref|YP_134248.1|	-	9.4e-26	90.4	0.0	2.3e-25	89.1	0.0	1.7	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|55376395|ref|YP_134248.1|	-	1.9e-20	72.5	0.9	5e-20	71.2	0.9	1.8	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
C1_2	PF03107.16	gi|55376395|ref|YP_134248.1|	-	0.0025	18.1	3.2	0.0059	16.9	1.0	2.4	2	0	0	2	2	2	1	C1	domain
SRP19	PF01922.17	gi|55376395|ref|YP_134248.1|	-	0.085	13.8	0.4	0.25	12.3	0.4	1.8	1	0	0	1	1	1	0	SRP19	protein
Ribosomal_L37ae	PF01780.19	gi|55376395|ref|YP_134248.1|	-	0.097	12.8	1.2	0.34	11.0	0.9	2.0	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
TetR_N	PF00440.23	gi|55376396|ref|YP_134249.1|	-	4e-12	45.7	0.1	7.5e-12	44.9	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.6	gi|55376396|ref|YP_134249.1|	-	4.4e-12	46.2	0.0	6e-12	45.8	0.0	1.2	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_17	PF17922.1	gi|55376396|ref|YP_134249.1|	-	1.3e-06	28.4	0.2	1.2e-05	25.3	0.1	2.1	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|55376396|ref|YP_134249.1|	-	8.1e-06	26.1	0.0	2.4e-05	24.5	0.0	1.8	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|55376396|ref|YP_134249.1|	-	5e-05	23.3	0.1	9.4e-05	22.4	0.1	1.5	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_5	PF08360.11	gi|55376396|ref|YP_134249.1|	-	0.0015	18.7	0.2	0.06	13.5	0.0	2.7	1	1	2	3	3	3	1	QacR-like	protein,	C-terminal	region
TetR_C_29	PF17938.1	gi|55376396|ref|YP_134249.1|	-	0.0025	17.9	0.0	0.015	15.4	0.0	2.1	1	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|55376396|ref|YP_134249.1|	-	0.0048	17.1	0.0	0.0092	16.2	0.0	1.5	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|55376396|ref|YP_134249.1|	-	0.022	15.3	0.3	0.53	10.9	0.0	2.2	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_5	PF01022.20	gi|55376396|ref|YP_134249.1|	-	0.022	14.6	0.0	0.048	13.5	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_AraC	PF00165.23	gi|55376396|ref|YP_134249.1|	-	0.027	14.6	0.1	0.057	13.5	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_23	PF13384.6	gi|55376396|ref|YP_134249.1|	-	0.027	14.2	0.0	0.15	11.9	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
Phage_Mu_Gam	PF07352.12	gi|55376396|ref|YP_134249.1|	-	0.027	14.4	0.1	0.12	12.3	0.0	1.9	1	1	1	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
HTH_38	PF13936.6	gi|55376396|ref|YP_134249.1|	-	0.039	13.7	0.0	0.11	12.3	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|55376396|ref|YP_134249.1|	-	0.055	13.6	0.0	0.21	11.7	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_1_2	PF13022.6	gi|55376396|ref|YP_134249.1|	-	0.055	13.6	0.0	0.1	12.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
UPF0122	PF04297.14	gi|55376396|ref|YP_134249.1|	-	0.09	13.0	0.4	0.09	13.0	0.4	2.0	2	1	1	3	3	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
TetR_C_4	PF08359.11	gi|55376396|ref|YP_134249.1|	-	0.11	12.7	0.2	0.25	11.5	0.2	1.7	1	1	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
TrmB	PF01978.19	gi|55376398|ref|YP_134251.1|	-	9.4e-18	63.9	0.0	1.7e-17	63.0	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|55376398|ref|YP_134251.1|	-	1.8e-07	30.6	0.0	2.9e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|55376398|ref|YP_134251.1|	-	0.0092	16.3	0.0	5.5	7.4	0.0	2.8	2	0	0	2	2	2	2	Transcriptional	regulator
HalOD1	PF18545.1	gi|55376399|ref|YP_134252.1|	-	2.7e-19	69.2	0.5	3.8e-19	68.7	0.5	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Per1	PF04080.13	gi|55376399|ref|YP_134252.1|	-	0.16	11.7	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Per1-like	family
HTH_32	PF13565.6	gi|55376402|ref|YP_134255.1|	-	9.7e-11	42.1	1.3	2.3e-10	40.9	0.1	2.3	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_23	PF13384.6	gi|55376402|ref|YP_134255.1|	-	5e-07	29.3	1.9	9.6e-07	28.4	0.1	2.3	3	0	0	3	3	3	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|55376402|ref|YP_134255.1|	-	6.1e-07	29.4	0.1	2e-06	27.7	0.1	2.0	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_33	PF13592.6	gi|55376402|ref|YP_134255.1|	-	4.5e-06	26.2	0.0	1e-05	25.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|55376402|ref|YP_134255.1|	-	0.00016	21.7	0.1	0.00056	20.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|55376402|ref|YP_134255.1|	-	0.00027	20.9	0.2	0.00058	19.9	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
LZ_Tnp_IS481	PF13011.6	gi|55376402|ref|YP_134255.1|	-	0.18	12.4	0.4	0.38	11.3	0.0	1.7	2	0	0	2	2	2	0	leucine-zipper	of	insertion	element	IS481
PGF-CTERM	PF18204.1	gi|55376403|ref|YP_134256.1|	-	0.00099	19.0	8.6	0.002	18.0	8.6	1.5	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF3244	PF11589.8	gi|55376403|ref|YP_134256.1|	-	0.0081	16.2	9.5	0.052	13.6	0.4	4.4	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF3244)
DUF3324	PF11797.8	gi|55376403|ref|YP_134256.1|	-	0.025	14.6	0.0	1.3	8.9	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	C-terminal	(DUF3324)
CelD_N	PF02927.14	gi|55376403|ref|YP_134256.1|	-	0.071	14.0	0.9	4.5	8.2	0.1	3.4	3	0	0	3	3	3	0	Cellulase	N-terminal	ig-like	domain
CreD	PF06123.12	gi|55376403|ref|YP_134256.1|	-	0.45	9.2	1.1	1.2	7.8	0.1	2.0	3	0	0	3	3	3	0	Inner	membrane	protein	CreD
OrfB_Zn_ribbon	PF07282.11	gi|55376404|ref|YP_134257.1|	-	9.8e-20	70.3	0.8	1.2e-19	70.0	0.8	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_L37ae	PF01780.19	gi|55376404|ref|YP_134257.1|	-	0.0077	16.3	0.5	0.0088	16.1	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|55376404|ref|YP_134257.1|	-	0.056	13.4	2.7	0.087	12.8	2.7	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
PadR	PF03551.14	gi|55376405|ref|YP_134258.1|	-	1.5e-09	37.6	0.1	1.9e-09	37.4	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|55376405|ref|YP_134258.1|	-	0.0055	16.7	0.0	0.0097	15.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
FUR	PF01475.19	gi|55376405|ref|YP_134258.1|	-	0.031	14.4	0.0	0.045	13.9	0.0	1.4	1	1	0	1	1	1	0	Ferric	uptake	regulator	family
HxlR	PF01638.17	gi|55376405|ref|YP_134258.1|	-	0.065	13.1	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_27	PF13463.6	gi|55376405|ref|YP_134258.1|	-	0.12	12.9	0.0	0.17	12.4	0.0	1.6	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DEDD_Tnp_IS110	PF01548.17	gi|55376407|ref|YP_134260.1|	-	4.5e-20	72.1	1.6	7.8e-20	71.3	1.6	1.3	1	0	0	1	1	1	1	Transposase
DUF2312	PF10073.9	gi|55376407|ref|YP_134260.1|	-	0.16	11.6	1.5	0.26	11.0	0.4	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
MRP-L20	PF12824.7	gi|55376410|ref|YP_134263.1|	-	0.14	12.3	0.0	0.14	12.3	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	ribosomal	protein	subunit	L20
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006393.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006393.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006393.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006393.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:17:20 2019
# [ok]