# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DDE_Tnp_IS1595 PF12762.2 gi|55376229|ref|YP_134083.1| - 3.6e-23 82.0 0.0 6.2e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|55376229|ref|YP_134083.1| - 3e-10 39.7 1.3 7.2e-10 38.5 0.9 1.7 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|55376229|ref|YP_134083.1| - 0.00029 20.2 5.1 0.00029 20.2 3.5 1.9 2 0 0 2 2 2 1 InsA N-terminal domain zf-Dof PF02701.10 gi|55376229|ref|YP_134083.1| - 0.061 13.2 4.3 0.13 12.2 3.0 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger DUF2387 PF09526.5 gi|55376229|ref|YP_134083.1| - 0.094 12.6 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ISL3 PF14690.1 gi|55376229|ref|YP_134083.1| - 0.26 11.3 7.0 1.9 8.6 0.3 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|55376229|ref|YP_134083.1| - 0.73 9.8 3.4 14 5.7 0.0 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|55376229|ref|YP_134083.1| - 5.6 7.0 9.4 1.1 9.2 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger DDE_Tnp_1 PF01609.16 gi|55376231|ref|YP_134085.1| - 8.5e-12 45.0 0.4 3.4e-11 43.1 0.3 2.0 1 1 1 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|55376231|ref|YP_134085.1| - 0.012 15.7 0.1 0.026 14.7 0.1 1.6 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_1_6 PF13751.1 gi|55376231|ref|YP_134085.1| - 0.042 13.8 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Transposase DDE domain RNase_HII PF01351.13 gi|55376233|ref|YP_134087.1| - 0.06 12.9 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease HII DUF4349 PF14257.1 gi|55376235|ref|YP_134089.1| - 0.11 11.7 0.3 0.16 11.1 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Cep57_CLD PF14073.1 gi|55376236|ref|YP_134090.1| - 0.071 12.9 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Centrosome localisation domain of Cep57 DUF91 PF01939.11 gi|55376237|ref|YP_134091.1| - 0.096 11.8 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF91 DUF4364 PF14277.1 gi|55376238|ref|YP_134092.1| - 0.021 14.4 0.1 0.03 13.9 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Spore_GerAC PF05504.6 gi|55376238|ref|YP_134092.1| - 0.037 13.7 0.1 0.042 13.6 0.1 1.1 1 0 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal MutS_III PF05192.13 gi|55376238|ref|YP_134092.1| - 0.14 11.9 0.3 0.23 11.1 0.2 1.4 1 1 0 1 1 1 0 MutS domain III HNH PF01844.18 gi|55376239|ref|YP_134093.1| - 0.0005 19.8 1.7 0.0005 19.8 1.2 4.9 5 1 0 5 5 5 1 HNH endonuclease zf-FCS PF06467.9 gi|55376239|ref|YP_134093.1| - 0.0017 17.9 32.8 0.019 14.5 2.5 4.7 4 1 0 4 4 4 2 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|55376239|ref|YP_134093.1| - 0.0028 17.4 30.8 0.055 13.3 0.9 5.1 4 1 2 6 6 6 2 MYND finger Metallothio_Pro PF02069.11 gi|55376239|ref|YP_134093.1| - 1.5 8.7 23.1 0.22 11.3 2.8 4.0 2 2 1 3 3 3 0 Prokaryotic metallothionein zf-C2HC_2 PF13913.1 gi|55376239|ref|YP_134093.1| - 4.7 6.9 12.3 28 4.5 0.1 4.8 5 0 0 5 5 5 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.5 gi|55376239|ref|YP_134093.1| - 9.5 6.2 32.2 0.48 10.4 1.7 6.3 5 2 2 7 7 7 0 Zinc ribbon domain CbiA PF01656.18 gi|55376240|ref|YP_134094.1| - 3.1e-18 65.8 0.1 3.8e-18 65.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|55376240|ref|YP_134094.1| - 1.6e-11 43.8 0.4 3e-06 26.5 0.1 2.1 1 1 0 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|55376240|ref|YP_134094.1| - 2.2e-08 34.1 0.1 0.00065 19.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain YhjQ PF06564.7 gi|55376240|ref|YP_134094.1| - 9e-06 25.2 0.0 0.0017 17.7 0.0 2.2 2 0 0 2 2 2 2 YhjQ protein ArsA_ATPase PF02374.10 gi|55376240|ref|YP_134094.1| - 1.2e-05 24.4 0.1 0.00026 20.1 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.17 gi|55376240|ref|YP_134094.1| - 0.018 14.4 0.2 0.12 11.8 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|55376240|ref|YP_134094.1| - 0.027 13.9 0.0 0.053 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_19 PF13245.1 gi|55376240|ref|YP_134094.1| - 0.042 13.6 0.3 0.091 12.5 0.2 1.5 1 0 0 1 1 1 0 Part of AAA domain Abhydrolase_5 PF12695.2 gi|55376240|ref|YP_134094.1| - 0.074 12.8 0.0 14 5.4 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family Fer4_NifH PF00142.13 gi|55376240|ref|YP_134094.1| - 0.096 11.8 0.0 0.2 10.8 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MobB PF03205.9 gi|55376240|ref|YP_134094.1| - 0.13 12.0 0.4 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Cyclase_polyket PF04673.7 gi|55376241|ref|YP_134095.1| - 0.12 12.4 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Polyketide synthesis cyclase zinc_ribbon_5 PF13719.1 gi|55376242|ref|YP_134096.1| - 0.069 12.7 2.0 4.3 7.0 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.6 gi|55376242|ref|YP_134096.1| - 0.073 12.3 0.5 0.073 12.3 0.3 2.7 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|55376242|ref|YP_134096.1| - 0.093 12.4 2.1 5.7 6.7 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|55376242|ref|YP_134096.1| - 0.31 10.9 4.9 0.27 11.1 0.7 2.4 3 0 0 3 3 3 0 IBR domain zf-ribbon_3 PF13248.1 gi|55376242|ref|YP_134096.1| - 4.4 6.6 9.8 2.6 7.3 0.1 3.3 4 0 0 4 4 4 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|55376242|ref|YP_134096.1| - 7.4 6.3 8.3 1.3 8.7 3.1 1.8 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) HTH_23 PF13384.1 gi|55376243|ref|YP_134097.1| - 0.00065 19.2 0.0 0.0008 18.9 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|55376243|ref|YP_134097.1| - 0.0019 18.1 0.1 0.003 17.4 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_7 PF02796.10 gi|55376243|ref|YP_134097.1| - 0.009 15.8 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_28 PF13518.1 gi|55376243|ref|YP_134097.1| - 0.019 14.9 0.0 0.027 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Semialdhyde_dh PF01118.19 gi|55376243|ref|YP_134097.1| - 0.024 14.9 0.0 0.026 14.8 0.0 1.1 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain HTH_38 PF13936.1 gi|55376243|ref|YP_134097.1| - 0.046 13.2 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain AP3B1_C PF14796.1 gi|55376243|ref|YP_134097.1| - 0.12 12.0 0.1 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal TrmB PF01978.14 gi|55376243|ref|YP_134097.1| - 0.15 11.7 0.1 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB zf-BED PF02892.10 gi|55376244|ref|YP_134098.1| - 0.037 13.7 0.6 0.66 9.7 0.1 2.3 1 1 1 2 2 2 0 BED zinc finger zf-C2H2_4 PF13894.1 gi|55376244|ref|YP_134098.1| - 0.086 13.2 4.2 1.1 9.7 0.1 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|55376244|ref|YP_134098.1| - 0.37 11.1 1.7 0.81 10.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-RanBP PF00641.13 gi|55376244|ref|YP_134098.1| - 3.6 6.7 6.2 15 4.8 0.4 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others HEAT_2 PF13646.1 gi|55376245|ref|YP_134099.1| - 1.1e-52 176.2 45.9 1.2e-15 57.5 1.7 5.4 1 1 6 7 7 7 7 HEAT repeats HEAT_EZ PF13513.1 gi|55376245|ref|YP_134099.1| - 9.3e-17 60.9 22.0 0.0005 20.4 0.0 6.7 6 1 0 6 6 6 5 HEAT-like repeat HEAT PF02985.17 gi|55376245|ref|YP_134099.1| - 4.4e-15 54.3 15.6 0.0011 18.8 0.1 7.4 6 1 1 7 7 7 4 HEAT repeat HEAT_PBS PF03130.11 gi|55376245|ref|YP_134099.1| - 2.2e-13 49.3 20.3 0.0013 18.9 0.6 7.8 8 1 0 8 8 8 4 PBS lyase HEAT-like repeat Arm PF00514.18 gi|55376245|ref|YP_134099.1| - 1.2e-08 34.4 7.0 0.029 14.1 0.0 6.7 6 1 1 7 7 7 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|55376245|ref|YP_134099.1| - 0.0031 15.9 0.0 0.49 8.6 0.0 2.9 2 1 1 3 3 3 1 Adaptin N terminal region AAA_16 PF13191.1 gi|55376245|ref|YP_134099.1| - 0.0061 16.5 2.8 0.014 15.3 0.2 2.5 1 1 1 2 2 2 1 AAA ATPase domain ALF PF03752.8 gi|55376245|ref|YP_134099.1| - 0.018 14.9 17.3 1.5 8.7 0.8 5.2 5 0 0 5 5 5 0 Short repeats of unknown function Unstab_antitox PF09720.5 gi|55376245|ref|YP_134099.1| - 0.25 11.0 3.0 1.5 8.5 1.0 2.9 2 1 0 2 2 2 0 Putative addiction module component Response_reg PF00072.19 gi|55376247|ref|YP_134101.1| - 1.8e-23 82.6 0.0 2.2e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|55376247|ref|YP_134101.1| - 0.0067 16.4 0.1 0.008 16.2 0.1 1.3 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Glyco_trans_1_3 PF13528.1 gi|55376247|ref|YP_134101.1| - 0.085 12.0 0.0 0.089 11.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 1 Phage_integrase PF00589.17 gi|55376248|ref|YP_134102.1| - 5.3e-10 39.2 0.0 6.4e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|55376248|ref|YP_134102.1| - 4.4e-06 26.5 0.0 5.3e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Integrase TrmB PF01978.14 gi|55376251|ref|YP_134105.1| - 0.00015 21.4 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|55376251|ref|YP_134105.1| - 0.0024 17.5 0.0 0.0061 16.2 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|55376251|ref|YP_134105.1| - 0.0066 16.1 0.0 0.034 13.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|55376251|ref|YP_134105.1| - 0.0089 15.8 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Cyclase_polyket PF04673.7 gi|55376251|ref|YP_134105.1| - 0.031 14.3 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Polyketide synthesis cyclase HTH_Crp_2 PF13545.1 gi|55376251|ref|YP_134105.1| - 0.042 13.6 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|55376251|ref|YP_134105.1| - 0.049 13.2 0.0 0.09 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.1 gi|55376251|ref|YP_134105.1| - 0.06 13.1 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|55376252|ref|YP_134106.1| - 1.8e-05 24.4 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55376252|ref|YP_134106.1| - 0.00029 20.1 0.0 0.00046 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|55376252|ref|YP_134106.1| - 0.022 15.0 0.0 0.069 13.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|55376252|ref|YP_134106.1| - 0.042 13.4 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PadR PF03551.9 gi|55376253|ref|YP_134107.1| - 4.8e-05 23.0 0.0 7.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55376253|ref|YP_134107.1| - 0.00011 22.4 0.2 0.0004 20.6 0.1 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|55376253|ref|YP_134107.1| - 0.0033 17.1 0.0 0.0052 16.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|55376253|ref|YP_134107.1| - 0.011 15.6 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family MarR_2 PF12802.2 gi|55376253|ref|YP_134107.1| - 0.012 15.2 0.2 0.18 11.4 0.0 2.6 2 1 0 2 2 2 0 MarR family HTH_36 PF13730.1 gi|55376253|ref|YP_134107.1| - 0.061 13.4 0.0 0.16 12.1 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain SgrR_N PF12793.2 gi|55376253|ref|YP_134107.1| - 0.074 13.0 0.2 7 6.6 0.1 2.2 2 0 0 2 2 2 0 Sugar transport-related sRNA regulator N-term DUF3263 PF11662.3 gi|55376253|ref|YP_134107.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) HTH_45 PF14947.1 gi|55376253|ref|YP_134107.1| - 0.15 11.8 0.0 0.34 10.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix AAA_10 PF12846.2 gi|55376255|ref|YP_134109.1| - 0.0099 15.3 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain zf-CCHC_3 PF13917.1 gi|55376255|ref|YP_134109.1| - 0.019 14.7 0.3 0.045 13.4 0.0 1.7 2 0 0 2 2 2 0 Zinc knuckle AAA_29 PF13555.1 gi|55376255|ref|YP_134109.1| - 0.032 13.7 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|55376255|ref|YP_134109.1| - 0.076 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|55376255|ref|YP_134109.1| - 0.13 12.1 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|55376255|ref|YP_134109.1| - 0.14 11.7 0.1 0.39 10.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain OrfB_Zn_ribbon PF07282.6 gi|55376256|ref|YP_134110.1| - 0.039 13.5 0.1 0.069 12.8 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Arv1 PF04161.8 gi|55376256|ref|YP_134110.1| - 0.093 12.6 0.2 0.14 12.0 0.1 1.2 1 0 0 1 1 1 0 Arv1-like family DZR PF12773.2 gi|55376256|ref|YP_134110.1| - 0.15 11.9 1.4 0.46 10.3 0.7 1.9 1 1 1 2 2 2 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|55376256|ref|YP_134110.1| - 0.15 11.8 0.8 0.39 10.5 0.6 1.7 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|55376256|ref|YP_134110.1| - 1.7 7.9 4.7 8.7 5.7 3.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF4343 PF14243.1 gi|55376257|ref|YP_134111.1| - 0.015 15.1 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4343) DDE_Tnp_1 PF01609.16 gi|55376259|ref|YP_134113.1| - 5.8e-27 94.6 0.5 7.5e-27 94.2 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|55376259|ref|YP_134113.1| - 0.039 13.6 0.0 0.65 9.7 0.0 2.2 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|55376259|ref|YP_134113.1| - 0.075 12.0 0.1 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 DUF1628 PF07790.6 gi|55376262|ref|YP_134116.1| - 1.5e-11 44.8 0.9 1.5e-11 44.8 0.6 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Zn_Tnp_IS91 PF14319.1 gi|55376263|ref|YP_134117.1| - 2.4 7.6 5.8 0.44 10.0 1.2 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain DUF1902 PF08972.6 gi|55376265|ref|YP_134119.1| - 0.026 14.0 0.0 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) MRP-L20 PF12824.2 gi|55376266|ref|YP_134120.1| - 0.04 13.8 0.0 0.041 13.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 PadR PF03551.9 gi|55376268|ref|YP_134122.1| - 6e-13 48.3 0.1 7.4e-13 48.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55376268|ref|YP_134122.1| - 0.00049 20.3 0.1 0.00069 19.8 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|55376268|ref|YP_134122.1| - 0.00062 19.5 0.0 0.00097 18.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|55376268|ref|YP_134122.1| - 0.0039 16.8 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.12 gi|55376268|ref|YP_134122.1| - 0.029 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix FUR PF01475.14 gi|55376268|ref|YP_134122.1| - 0.036 13.9 0.0 0.046 13.6 0.0 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.1 gi|55376268|ref|YP_134122.1| - 0.042 13.6 0.1 0.048 13.5 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF1495 PF07381.6 gi|55376268|ref|YP_134122.1| - 0.048 13.3 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|55376268|ref|YP_134122.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|55376269|ref|YP_134123.1| - 0.0031 17.2 0.0 0.0057 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|55376269|ref|YP_134123.1| - 0.051 13.2 0.2 0.21 11.2 0.2 2.1 1 1 0 1 1 1 0 MarR family Mrr_N PF14338.1 gi|55376269|ref|YP_134123.1| - 0.14 12.2 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain MarR_2 PF12802.2 gi|55376270|ref|YP_134124.1| - 6.6e-08 32.0 0.0 8.9e-08 31.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|55376270|ref|YP_134124.1| - 2e-06 27.0 0.0 3.2e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|55376270|ref|YP_134124.1| - 5.3e-06 26.6 0.0 7e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|55376270|ref|YP_134124.1| - 2.3e-05 23.9 0.0 3.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|55376270|ref|YP_134124.1| - 2.5e-05 23.9 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|55376270|ref|YP_134124.1| - 0.0042 16.5 0.0 0.0055 16.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|55376270|ref|YP_134124.1| - 0.0082 15.8 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|55376270|ref|YP_134124.1| - 0.011 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|55376270|ref|YP_134124.1| - 0.014 14.9 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain FeoC PF09012.5 gi|55376270|ref|YP_134124.1| - 0.032 13.9 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_AsnC-type PF13404.1 gi|55376270|ref|YP_134124.1| - 0.043 13.3 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|55376270|ref|YP_134124.1| - 0.071 12.8 0.0 0.09 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|55376270|ref|YP_134124.1| - 0.093 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TBPIP PF07106.8 gi|55376270|ref|YP_134124.1| - 0.12 11.9 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Cas_Cas6 PF01881.11 gi|55376272|ref|YP_134126.1| - 4.6e-10 39.9 0.0 8.3e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.5 gi|55376273|ref|YP_134127.1| - 1.1e-12 47.2 0.0 4.3e-09 35.4 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) Tn7_TnsC_Int PF11426.3 gi|55376273|ref|YP_134127.1| - 0.41 10.4 2.9 1.1 9.0 2.0 1.7 1 0 0 1 1 1 0 Tn7 transposition regulator TnsC DUF694 PF05107.7 gi|55376274|ref|YP_134128.1| - 1.2e-61 208.3 0.2 1.4e-61 208.0 0.1 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_Cas5d PF09704.5 gi|55376275|ref|YP_134129.1| - 1.9e-08 34.1 0.0 2.9e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|55376276|ref|YP_134130.1| - 2.7e-05 23.7 0.0 6.1e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|55376276|ref|YP_134130.1| - 0.02 14.7 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Cas_Cas4 PF01930.12 gi|55376277|ref|YP_134131.1| - 3.5e-46 157.0 0.0 4.2e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|55376277|ref|YP_134131.1| - 2.3e-06 27.1 0.1 6.4e-06 25.7 0.0 1.4 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.4 gi|55376277|ref|YP_134131.1| - 1.8 7.7 5.8 6.3 5.9 0.0 2.8 2 1 1 3 3 3 0 Exonuclease V - a 5' deoxyribonuclease Cas_Cas1 PF01867.11 gi|55376278|ref|YP_134132.1| - 3.9e-86 288.6 0.0 4.5e-86 288.4 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Vac_Fusion PF02346.11 gi|55376278|ref|YP_134132.1| - 0.0078 15.6 0.3 2.1 7.8 0.1 2.7 3 0 0 3 3 3 2 Chordopoxvirus fusion protein CRISPR_Cas2 PF09827.4 gi|55376279|ref|YP_134133.1| - 6.7e-18 64.6 0.4 7.7e-18 64.4 0.3 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas2CT1978 PF09707.5 gi|55376279|ref|YP_134133.1| - 0.00097 19.0 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) YolD PF08863.5 gi|55376279|ref|YP_134133.1| - 0.024 14.4 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 YolD-like protein