# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DDE_Tnp_IS1595 PF12762.7 gi|55376229|ref|YP_134083.1| - 5.9e-22 78.3 0.0 9.1e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|55376229|ref|YP_134083.1| - 1.6e-10 40.8 1.4 4.2e-10 39.4 1.4 1.8 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|55376229|ref|YP_134083.1| - 2.3e-05 24.0 5.4 2.3e-05 24.0 5.4 1.8 2 0 0 2 2 2 1 InsA N-terminal domain zf-Dof PF02701.15 gi|55376229|ref|YP_134083.1| - 0.03 14.5 3.4 0.064 13.4 3.4 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger Zn-ribbon_8 PF09723.10 gi|55376229|ref|YP_134083.1| - 0.056 13.6 1.0 15 5.8 0.1 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|55376229|ref|YP_134083.1| - 0.65 10.7 8.4 1.8 9.3 1.0 3.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|55376229|ref|YP_134083.1| - 1.6 8.7 4.0 6.9 6.7 4.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DDE_Tnp_1 PF01609.21 gi|55376231|ref|YP_134085.1| - 5.7e-12 45.7 0.4 1.2e-11 44.7 0.4 1.6 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|55376231|ref|YP_134085.1| - 0.063 13.7 0.1 0.14 12.6 0.1 1.6 1 0 0 1 1 1 0 Transposase DDE domain DMP12 PF16779.5 gi|55376231|ref|YP_134085.1| - 0.16 11.9 0.0 19 5.2 0.0 2.3 2 0 0 2 2 2 0 DNA-mimic protein Transcrip_reg PF01709.20 gi|55376232|ref|YP_134086.1| - 0.058 12.8 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator NucS PF01939.16 gi|55376237|ref|YP_134091.1| - 0.061 12.7 0.0 0.085 12.2 0.0 1.1 1 0 0 1 1 1 0 Endonuclease NucS NERD PF08378.11 gi|55376237|ref|YP_134091.1| - 0.16 12.5 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain DUF4364 PF14277.6 gi|55376238|ref|YP_134092.1| - 0.0055 16.5 0.1 0.0063 16.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF4065 PF13274.6 gi|55376238|ref|YP_134092.1| - 0.036 15.0 0.0 0.052 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) DUF3653 PF12375.8 gi|55376238|ref|YP_134092.1| - 0.051 13.7 0.2 0.098 12.8 0.2 1.5 1 1 0 1 1 1 0 Phage protein DUF2294 PF10057.9 gi|55376238|ref|YP_134092.1| - 0.13 12.4 0.1 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) HNH PF01844.23 gi|55376239|ref|YP_134093.1| - 0.00065 19.8 1.8 0.00065 19.8 1.8 4.5 5 1 1 6 6 6 1 HNH endonuclease VATC PF18716.1 gi|55376239|ref|YP_134093.1| - 0.0062 16.4 4.7 0.0062 16.4 4.7 5.6 6 0 0 6 6 6 3 Vms1-associating treble clef domain zf-MYND PF01753.18 gi|55376239|ref|YP_134093.1| - 0.013 15.5 33.7 0.049 13.7 1.8 5.0 3 2 2 5 5 5 0 MYND finger zf-FCS PF06467.14 gi|55376239|ref|YP_134093.1| - 0.017 15.1 29.0 0.96 9.4 2.6 4.8 3 1 0 3 3 3 0 MYM-type Zinc finger with FCS sequence motif Zn-ribbon_8 PF09723.10 gi|55376239|ref|YP_134093.1| - 0.062 13.4 29.3 2 8.6 6.4 6.1 5 1 0 5 5 5 0 Zinc ribbon domain ADK_lid PF05191.14 gi|55376239|ref|YP_134093.1| - 0.08 12.9 0.9 0.08 12.9 0.9 5.3 6 0 0 6 6 6 0 Adenylate kinase, active site lid zf-FLZ PF04570.14 gi|55376239|ref|YP_134093.1| - 2.9 7.5 28.1 0.063 12.8 2.8 4.2 3 1 1 4 4 4 0 zinc-finger of the FCS-type, C2-C2 zf-ribbon_3 PF13248.6 gi|55376239|ref|YP_134093.1| - 4.4 6.9 17.4 3 7.4 0.1 5.8 6 0 0 6 6 6 0 zinc-ribbon domain AAA_31 PF13614.6 gi|55376240|ref|YP_134094.1| - 2.8e-22 79.5 0.0 3.9e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55376240|ref|YP_134094.1| - 7e-13 48.7 0.0 9.1e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|55376240|ref|YP_134094.1| - 3.5e-12 46.2 0.2 5.5e-06 25.9 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|55376240|ref|YP_134094.1| - 3.3e-08 33.3 0.0 4e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|55376240|ref|YP_134094.1| - 1.8e-05 24.1 0.1 0.00042 19.6 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.9 gi|55376240|ref|YP_134094.1| - 9e-05 22.0 0.7 0.00012 21.6 0.1 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CLP1_P PF16575.5 gi|55376240|ref|YP_134094.1| - 0.0065 16.3 0.0 0.017 14.9 0.0 1.6 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|55376240|ref|YP_134094.1| - 0.033 13.8 0.2 0.19 11.3 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|55376240|ref|YP_134094.1| - 0.08 12.4 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Cyclase_polyket PF04673.12 gi|55376241|ref|YP_134095.1| - 0.062 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Polyketide synthesis cyclase zinc_ribbon_4 PF13717.6 gi|55376242|ref|YP_134096.1| - 0.089 12.7 1.4 7.8 6.5 0.0 2.7 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.11 gi|55376242|ref|YP_134096.1| - 0.17 11.4 0.4 0.17 11.4 0.4 2.6 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-RING_7 PF02591.15 gi|55376242|ref|YP_134096.1| - 0.22 11.8 4.3 6.6 7.0 0.7 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain IBR PF01485.21 gi|55376242|ref|YP_134096.1| - 0.24 11.6 5.6 0.17 12.1 1.8 2.2 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain Mu-like_Com PF10122.9 gi|55376242|ref|YP_134096.1| - 0.36 10.3 4.5 0.35 10.3 1.7 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1595 PF12760.7 gi|55376242|ref|YP_134096.1| - 4.9 7.2 7.5 31 4.6 0.0 3.3 3 0 0 3 3 3 0 Transposase zinc-ribbon domain HTH_23 PF13384.6 gi|55376243|ref|YP_134097.1| - 0.0025 17.6 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|55376243|ref|YP_134097.1| - 0.0078 16.2 0.0 0.0098 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|55376243|ref|YP_134097.1| - 0.0087 15.5 0.1 0.012 15.0 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_7 PF02796.15 gi|55376243|ref|YP_134097.1| - 0.011 15.8 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_28 PF13518.6 gi|55376243|ref|YP_134097.1| - 0.014 15.5 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.20 gi|55376243|ref|YP_134097.1| - 0.018 15.4 0.0 0.027 14.8 0.0 1.3 1 0 0 1 1 1 0 Transposase Semialdhyde_dh PF01118.24 gi|55376243|ref|YP_134097.1| - 0.054 13.9 0.0 0.06 13.8 0.0 1.1 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain zf-C2H2_4 PF13894.6 gi|55376244|ref|YP_134098.1| - 0.017 15.9 3.0 2.5 9.2 0.1 2.9 2 0 0 2 2 2 0 C2H2-type zinc finger zf-3CxxC PF13695.6 gi|55376244|ref|YP_134098.1| - 0.041 14.3 0.7 0.088 13.3 0.7 1.6 1 0 0 1 1 1 0 Zinc-binding domain DUF835 PF05763.12 gi|55376244|ref|YP_134098.1| - 0.12 12.1 0.2 0.21 11.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) zf-H2C2_2 PF13465.6 gi|55376244|ref|YP_134098.1| - 0.51 10.9 2.2 1.2 9.7 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain HEAT_2 PF13646.6 gi|55376245|ref|YP_134099.1| - 7.5e-41 138.4 45.7 2.5e-14 53.4 2.5 5.6 1 1 6 7 7 7 7 HEAT repeats HEAT PF02985.22 gi|55376245|ref|YP_134099.1| - 2.6e-17 61.4 11.2 0.00025 21.0 0.0 7.1 7 1 0 7 7 7 4 HEAT repeat HEAT_EZ PF13513.6 gi|55376245|ref|YP_134099.1| - 5.6e-14 52.3 17.2 0.0018 18.7 0.0 6.5 5 1 1 6 6 6 4 HEAT-like repeat HEAT_PBS PF03130.16 gi|55376245|ref|YP_134099.1| - 2.6e-13 49.3 20.3 0.0016 18.9 0.8 7.8 8 1 0 8 8 8 4 PBS lyase HEAT-like repeat Arm PF00514.23 gi|55376245|ref|YP_134099.1| - 1.1e-08 34.8 5.2 0.27 11.3 0.0 6.7 6 1 1 7 7 7 2 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|55376245|ref|YP_134099.1| - 1.4e-08 35.0 0.9 0.024 14.7 0.1 4.3 3 2 1 4 4 4 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|55376245|ref|YP_134099.1| - 0.0055 15.3 0.1 0.94 8.0 0.0 2.9 2 1 0 3 3 3 1 Adaptin N terminal region Response_reg PF00072.24 gi|55376247|ref|YP_134101.1| - 1e-24 86.8 0.0 1.3e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|55376247|ref|YP_134101.1| - 0.0043 17.3 0.1 0.0058 16.9 0.1 1.3 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MULE PF10551.9 gi|55376247|ref|YP_134101.1| - 0.046 14.1 0.1 0.22 11.9 0.0 1.9 1 1 1 2 2 2 0 MULE transposase domain Phage_integrase PF00589.22 gi|55376248|ref|YP_134102.1| - 6.8e-10 39.0 0.0 9.1e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family TetR_C_15 PF17918.1 gi|55376248|ref|YP_134102.1| - 0.056 14.2 1.0 0.93 10.3 0.6 2.1 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain MciZ PF13072.6 gi|55376250|ref|YP_134104.1| - 0.14 12.0 0.5 0.47 10.3 0.1 1.9 2 0 0 2 2 2 0 Mother cell inhibitor of FtsZ TrmB PF01978.19 gi|55376251|ref|YP_134105.1| - 0.00016 21.5 0.0 0.00038 20.3 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|55376251|ref|YP_134105.1| - 0.0032 17.4 0.0 0.0075 16.2 0.0 1.7 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|55376251|ref|YP_134105.1| - 0.0047 16.8 0.0 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|55376251|ref|YP_134105.1| - 0.017 15.1 0.0 0.027 14.5 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|55376251|ref|YP_134105.1| - 0.079 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.7 gi|55376252|ref|YP_134106.1| - 0.0002 21.3 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|55376252|ref|YP_134106.1| - 0.014 15.4 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 gi|55376252|ref|YP_134106.1| - 0.062 13.1 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|55376252|ref|YP_134106.1| - 0.076 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|55376252|ref|YP_134106.1| - 0.081 13.4 0.0 0.2 12.2 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|55376252|ref|YP_134106.1| - 0.12 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|55376252|ref|YP_134106.1| - 0.12 12.4 0.1 0.39 10.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix PadR PF03551.14 gi|55376253|ref|YP_134107.1| - 7.8e-05 22.6 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|55376253|ref|YP_134107.1| - 0.004 17.0 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|55376253|ref|YP_134107.1| - 0.0045 17.4 0.0 0.012 16.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|55376253|ref|YP_134107.1| - 0.0055 16.8 0.3 0.0077 16.3 0.0 1.4 2 0 0 2 2 2 1 Replication-relaxation MarR_2 PF12802.7 gi|55376253|ref|YP_134107.1| - 0.0077 16.1 0.2 0.091 12.7 0.0 2.5 2 1 0 2 2 2 1 MarR family FUR PF01475.19 gi|55376253|ref|YP_134107.1| - 0.015 15.4 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.6 gi|55376253|ref|YP_134107.1| - 0.023 14.6 0.0 0.06 13.3 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4364 PF14277.6 gi|55376253|ref|YP_134107.1| - 0.032 14.0 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SgrR_N PF12793.7 gi|55376253|ref|YP_134107.1| - 0.083 13.1 0.1 5.5 7.2 0.1 2.3 2 0 0 2 2 2 0 Sugar transport-related sRNA regulator N-term Iron_traffic PF04362.14 gi|55376253|ref|YP_134107.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial Fe(2+) trafficking AAA_29 PF13555.6 gi|55376255|ref|YP_134109.1| - 0.023 14.4 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain zf-CCHC_3 PF13917.6 gi|55376255|ref|YP_134109.1| - 0.035 14.1 0.6 0.06 13.3 0.0 1.6 2 0 0 2 2 2 0 Zinc knuckle AAA_30 PF13604.6 gi|55376255|ref|YP_134109.1| - 0.099 12.4 0.0 0.38 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain OrfB_Zn_ribbon PF07282.11 gi|55376256|ref|YP_134110.1| - 0.025 14.5 0.1 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0167 PF03691.14 gi|55376256|ref|YP_134110.1| - 0.028 14.2 0.7 0.039 13.8 0.7 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0167) zf-dskA_traR PF01258.17 gi|55376256|ref|YP_134110.1| - 0.051 13.5 0.7 0.13 12.2 0.7 1.7 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 gi|55376256|ref|YP_134110.1| - 0.091 12.8 1.7 0.19 11.7 1.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon R2K_2 PF18299.1 gi|55376257|ref|YP_134111.1| - 0.086 12.7 0.0 0.094 12.6 0.0 1.0 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 DUF2080 PF09853.9 gi|55376257|ref|YP_134111.1| - 0.17 11.7 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative transposon-encoded protein (DUF2080) DDE_Tnp_1 PF01609.21 gi|55376259|ref|YP_134113.1| - 7.8e-31 107.4 0.3 1e-30 107.0 0.3 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|55376259|ref|YP_134113.1| - 0.011 14.0 0.1 0.024 12.9 0.0 1.5 1 1 0 1 1 1 0 Transposase DDE domain group 1 DDE_Tnp_2 PF04693.12 gi|55376259|ref|YP_134113.1| - 0.091 12.0 0.1 0.12 11.6 0.1 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Phage_int_SAM_5 PF13102.6 gi|55376260|ref|YP_134114.1| - 0.0048 17.2 0.0 0.44 10.9 0.0 3.1 3 0 0 3 3 3 1 Phage integrase SAM-like domain Pilin_N PF07790.11 gi|55376262|ref|YP_134116.1| - 1.8e-11 44.8 1.6 2.9e-11 44.1 0.8 1.7 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Arch_flagellin PF01917.16 gi|55376262|ref|YP_134116.1| - 0.0026 18.0 2.6 0.0037 17.4 2.6 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin Rad50_zn_hook PF04423.14 gi|55376263|ref|YP_134117.1| - 0.0037 17.1 0.2 0.0083 15.9 0.2 1.5 1 0 0 1 1 1 1 Rad50 zinc hook motif Zn_Tnp_IS91 PF14319.6 gi|55376263|ref|YP_134117.1| - 1.3 9.1 6.0 0.18 11.8 1.6 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain MRP-L20 PF12824.7 gi|55376266|ref|YP_134120.1| - 0.052 13.7 0.0 0.055 13.6 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 PadR PF03551.14 gi|55376268|ref|YP_134122.1| - 1.4e-13 50.6 0.1 1.6e-13 50.4 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|55376268|ref|YP_134122.1| - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|55376268|ref|YP_134122.1| - 0.0039 16.9 0.0 0.0053 16.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|55376268|ref|YP_134122.1| - 0.0075 16.1 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) RTP PF02334.16 gi|55376268|ref|YP_134122.1| - 0.014 16.0 0.0 0.023 15.3 0.0 1.4 1 1 0 1 1 1 0 Replication terminator protein HxlR PF01638.17 gi|55376268|ref|YP_134122.1| - 0.016 15.1 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|55376268|ref|YP_134122.1| - 0.039 14.5 0.0 0.066 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.19 gi|55376268|ref|YP_134122.1| - 0.049 13.8 0.0 0.069 13.3 0.0 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family BMFP PF04380.13 gi|55376268|ref|YP_134122.1| - 0.15 12.5 0.0 0.28 11.7 0.0 1.4 1 0 0 1 1 1 0 Membrane fusogenic activity HTH_45 PF14947.6 gi|55376269|ref|YP_134123.1| - 0.0093 15.9 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|55376269|ref|YP_134123.1| - 0.015 15.1 0.4 0.076 12.9 0.4 2.2 1 1 0 1 1 1 0 MarR family Mrr_N PF14338.6 gi|55376269|ref|YP_134123.1| - 0.054 13.6 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 Mrr N-terminal domain RbsD_FucU PF05025.13 gi|55376269|ref|YP_134123.1| - 0.07 13.6 0.8 14 6.2 0.1 2.5 2 1 0 2 2 2 0 RbsD / FucU transport protein family HTH_1 PF00126.27 gi|55376269|ref|YP_134123.1| - 8.7 6.4 9.0 14 5.7 0.1 3.9 3 1 0 4 4 4 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|55376270|ref|YP_134124.1| - 3e-07 29.9 0.0 8.7e-07 28.4 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|55376270|ref|YP_134124.1| - 3.3e-07 30.1 0.0 5.1e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|55376270|ref|YP_134124.1| - 2.2e-05 24.4 0.0 3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|55376270|ref|YP_134124.1| - 3.3e-05 23.8 0.0 5.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|55376270|ref|YP_134124.1| - 0.005 17.3 0.0 0.0065 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|55376270|ref|YP_134124.1| - 0.005 16.5 0.0 0.0067 16.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|55376270|ref|YP_134124.1| - 0.0093 16.2 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|55376270|ref|YP_134124.1| - 0.024 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|55376270|ref|YP_134124.1| - 0.026 14.4 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 MarR family TBPIP PF07106.13 gi|55376270|ref|YP_134124.1| - 0.033 14.1 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_AsnC-type PF13404.6 gi|55376270|ref|YP_134124.1| - 0.048 13.5 0.0 0.074 12.9 0.0 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|55376270|ref|YP_134124.1| - 0.05 13.6 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.6 gi|55376270|ref|YP_134124.1| - 0.06 13.3 0.0 0.067 13.2 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Mnd1 PF03962.15 gi|55376270|ref|YP_134124.1| - 0.08 13.2 0.0 0.14 12.5 0.0 1.5 1 1 0 1 1 1 0 Mnd1 HTH domain TrmB PF01978.19 gi|55376270|ref|YP_134124.1| - 0.17 11.8 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cas_Cas6 PF01881.16 gi|55376272|ref|YP_134126.1| - 7.4e-21 75.2 0.0 1.1e-20 74.7 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.10 gi|55376273|ref|YP_134127.1| - 2e-21 76.4 0.0 1.4e-12 47.2 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) Cas_Cas7 PF05107.12 gi|55376274|ref|YP_134128.1| - 2.4e-46 158.3 0.1 2.9e-46 158.1 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas5d PF09704.10 gi|55376275|ref|YP_134129.1| - 3e-09 37.1 0.1 6.3e-09 36.0 0.0 1.6 1 1 1 2 2 2 1 CRISPR-associated protein (Cas_Cas5) ResIII PF04851.15 gi|55376276|ref|YP_134130.1| - 5.4e-07 29.8 0.0 1e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HD_6 PF18019.1 gi|55376276|ref|YP_134130.1| - 8.4e-07 29.3 0.0 2.5e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 HD domain DEAD PF00270.29 gi|55376276|ref|YP_134130.1| - 4.1e-06 26.7 0.0 1e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HD PF01966.22 gi|55376276|ref|YP_134130.1| - 0.0097 16.1 0.2 0.032 14.5 0.1 2.0 2 0 0 2 2 2 1 HD domain LppA PF16708.5 gi|55376276|ref|YP_134130.1| - 0.18 11.7 1.3 21 5.0 0.0 3.4 3 0 0 3 3 3 0 Lipoprotein confined to pathogenic Mycobacterium Cas_Cas4 PF01930.17 gi|55376277|ref|YP_134131.1| - 3.9e-47 160.4 0.0 4.6e-47 160.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|55376277|ref|YP_134131.1| - 4.3e-05 23.5 0.1 5.9e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Exo5 PF09810.9 gi|55376277|ref|YP_134131.1| - 0.16 11.5 3.4 6.2 6.2 0.0 3.0 2 1 1 3 3 3 0 Exonuclease V - a 5' deoxyribonuclease Cas_Cas1 PF01867.16 gi|55376278|ref|YP_134132.1| - 1.2e-88 296.9 0.0 1.4e-88 296.7 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Vac_Fusion PF02346.16 gi|55376278|ref|YP_134132.1| - 0.068 12.8 0.2 2.1 8.0 0.2 2.7 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 CRISPR_Cas2 PF09827.9 gi|55376279|ref|YP_134133.1| - 6e-18 64.8 0.1 7.3e-18 64.5 0.1 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas2CT1978 PF09707.10 gi|55376279|ref|YP_134133.1| - 0.00086 19.3 0.0 0.0009 19.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas2CT1978) YolD PF08863.10 gi|55376279|ref|YP_134133.1| - 0.094 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 YolD-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006392.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006392.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006392.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006392.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:16:29 2019 # [ok]