#                                                                       --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                   accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------         -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_3	PF01381.17	gi|55376188|ref|YP_134043.1|	-	0.2	11.5	0.0	0.46	10.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix
PadR	PF03551.9	gi|55376190|ref|YP_134045.1|	-	0.00067	19.3	0.0	0.00086	19.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.1	gi|55376190|ref|YP_134045.1|	-	0.0019	17.8	0.0	0.0024	17.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF505	PF04458.7	gi|55376190|ref|YP_134045.1|	-	0.0026	15.9	0.0	0.003	15.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_45	PF14947.1	gi|55376190|ref|YP_134045.1|	-	0.0028	17.4	0.0	0.0039	16.9	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
Replic_Relax	PF13814.1	gi|55376190|ref|YP_134045.1|	-	0.0034	17.2	0.0	0.0038	17.0	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_27	PF13463.1	gi|55376190|ref|YP_134045.1|	-	0.0038	17.5	0.1	0.0066	16.7	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HxlR	PF01638.12	gi|55376190|ref|YP_134045.1|	-	0.036	13.6	0.0	0.05	13.2	0.0	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_12	PF08461.5	gi|55376190|ref|YP_134045.1|	-	0.063	13.0	0.0	0.086	12.5	0.0	1.3	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
DUF2513	PF10711.4	gi|55376190|ref|YP_134045.1|	-	0.082	12.9	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
HTH_34	PF13601.1	gi|55376190|ref|YP_134045.1|	-	0.12	12.3	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.11	gi|55376190|ref|YP_134045.1|	-	0.15	11.6	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
PgpA	PF04608.8	gi|55376191|ref|YP_134046.1|	-	0.2	11.4	1.9	0.26	11.0	1.2	1.4	1	1	0	1	1	1	0	Phosphatidylglycerophosphatase	A
DUF1624	PF07786.7	gi|55376191|ref|YP_134046.1|	-	0.25	10.6	5.2	0.36	10.1	3.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1624)
DUF3382	PF11862.3	gi|55376191|ref|YP_134046.1|	-	6.7	6.6	7.6	21	5.1	1.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3382)
HHH_5	PF14520.1	gi|55376193|ref|YP_134048.1|	-	2.1e-06	27.8	0.1	2.7e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|55376193|ref|YP_134048.1|	-	8.5e-05	22.0	0.1	0.00046	19.7	0.1	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.2	gi|55376193|ref|YP_134048.1|	-	8.6e-05	22.3	0.1	0.00011	22.0	0.0	1.2	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
CARDB	PF07705.6	gi|55376195|ref|YP_134050.1|	-	0.001	19.0	0.0	0.0029	17.6	0.0	1.9	1	1	0	1	1	1	1	CARDB
AAA_22	PF13401.1	gi|55376196|ref|YP_134051.1|	-	7.1e-08	32.6	0.0	2e-07	31.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|55376196|ref|YP_134051.1|	-	1e-07	32.1	7.8	1.4e-07	31.7	0.5	3.3	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|55376196|ref|YP_134051.1|	-	0.00036	20.7	0.0	0.0014	18.8	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|55376196|ref|YP_134051.1|	-	0.0029	16.7	0.1	0.081	11.9	0.0	2.5	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_14	PF13173.1	gi|55376196|ref|YP_134051.1|	-	0.0042	16.9	0.0	0.011	15.6	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|55376196|ref|YP_134051.1|	-	0.006	17.3	1.5	0.048	14.4	1.1	2.6	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|55376196|ref|YP_134051.1|	-	0.012	15.4	0.2	0.2	11.5	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
DUF815	PF05673.8	gi|55376196|ref|YP_134051.1|	-	0.016	14.1	0.0	0.028	13.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.9	gi|55376196|ref|YP_134051.1|	-	0.019	14.6	0.0	0.39	10.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.21	gi|55376196|ref|YP_134051.1|	-	0.02	14.4	0.0	0.037	13.4	0.0	1.5	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|55376196|ref|YP_134051.1|	-	0.039	14.2	0.3	0.13	12.5	0.0	2.1	2	2	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|55376196|ref|YP_134051.1|	-	0.061	12.9	0.0	0.13	11.8	0.0	1.7	1	1	0	1	1	1	0	NACHT	domain
RNA_helicase	PF00910.17	gi|55376196|ref|YP_134051.1|	-	0.11	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Arch_ATPase	PF01637.13	gi|55376196|ref|YP_134051.1|	-	0.14	11.8	0.0	0.5	10.0	0.0	1.8	2	0	0	2	2	2	0	Archaeal	ATPase
DEAD	PF00270.24	gi|55376196|ref|YP_134051.1|	-	0.15	11.5	0.3	4.3	6.8	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
YpzI	PF14140.1	gi|55376199|ref|YP_134054.1|	-	0.021	14.3	0.4	0.046	13.2	0.2	1.5	1	0	0	1	1	1	0	YpzI-like	protein
zf-Di19	PF05605.7	gi|55376200|ref|YP_134055.1|	-	0.032	14.3	0.3	0.041	14.0	0.2	1.2	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF1272	PF06906.6	gi|55376200|ref|YP_134055.1|	-	0.064	13.1	1.3	1.1	9.1	0.9	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Zn-ribbon_8	PF09723.5	gi|55376203|ref|YP_134058.1|	-	0.016	15.1	0.3	0.016	15.1	0.2	3.4	2	1	0	3	3	3	0	Zinc	ribbon	domain
SEEEED	PF14797.1	gi|55376203|ref|YP_134058.1|	-	0.042	14.0	1.5	0.061	13.4	1.1	1.2	1	0	0	1	1	1	0	Serine-rich	region	of	AP3B1,	clathrin-adaptor	complex
TF_Zn_Ribbon	PF08271.7	gi|55376203|ref|YP_134058.1|	-	0.24	10.7	2.9	1.4	8.3	2.0	2.3	1	1	0	1	1	1	0	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|55376203|ref|YP_134058.1|	-	0.26	10.9	4.9	3.3	7.4	0.1	2.7	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Elf1	PF05129.8	gi|55376203|ref|YP_134058.1|	-	0.34	10.6	2.6	3.7	7.3	0.1	2.6	2	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-RING_4	PF14570.1	gi|55376205|ref|YP_134060.1|	-	0.16	11.5	6.9	2	8.0	4.8	2.3	1	1	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
L71	PF02448.10	gi|55376205|ref|YP_134060.1|	-	0.33	10.8	2.6	0.59	10.0	1.8	1.4	1	0	0	1	1	1	0	L71	family
Zn_Tnp_IS1	PF03811.8	gi|55376206|ref|YP_134061.1|	-	0.0075	15.7	0.3	0.015	14.7	0.2	1.5	1	0	0	1	1	1	1	InsA	N-terminal	domain
zf-ribbon_3	PF13248.1	gi|55376206|ref|YP_134061.1|	-	0.028	13.6	0.8	0.095	11.9	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2752	PF10825.3	gi|55376206|ref|YP_134061.1|	-	0.028	14.4	0.1	0.048	13.6	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2752)
Mu-like_Com	PF10122.4	gi|55376206|ref|YP_134061.1|	-	0.03	13.3	0.2	0.047	12.7	0.1	1.3	1	0	0	1	1	1	0	Mu-like	prophage	protein	Com
Ribosomal_S27e	PF01667.12	gi|55376206|ref|YP_134061.1|	-	0.061	12.8	0.6	0.12	11.9	0.2	1.5	2	0	0	2	2	2	0	Ribosomal	protein	S27
Zn-ribbon_8	PF09723.5	gi|55376206|ref|YP_134061.1|	-	0.11	12.4	0.5	0.27	11.1	0.1	1.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|55376206|ref|YP_134061.1|	-	5.2	6.8	5.7	1.3	8.7	0.5	2.3	2	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Zn_Tnp_IS91	PF14319.1	gi|55376209|ref|YP_134064.1|	-	0.57	9.6	4.9	0.13	11.7	0.8	1.8	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
Etmic-2	PF06670.6	gi|55376210|ref|YP_134065.1|	-	0.086	11.5	0.1	0.097	11.3	0.1	1.0	1	0	0	1	1	1	0	Microneme	protein	Etmic-2
MEA1	PF06910.6	gi|55376210|ref|YP_134065.1|	-	1.6	8.3	4.3	4.8	6.8	1.3	2.3	1	1	2	3	3	3	0	Male	enhanced	antigen	1	(MEA1)
OrfB_Zn_ribbon	PF07282.6	gi|55376211|ref|YP_134066.1|	-	2.1e-24	84.9	0.2	4.9e-24	83.7	0.1	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DNA_RNApol_7kD	PF03604.8	gi|55376211|ref|YP_134066.1|	-	0.0049	16.2	3.0	0.0071	15.7	0.5	2.3	2	0	0	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
DZR	PF12773.2	gi|55376211|ref|YP_134066.1|	-	0.054	13.3	0.3	0.12	12.2	0.2	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|55376211|ref|YP_134066.1|	-	1	8.6	3.0	11	5.3	0.4	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
OrfB_IS605	PF01385.14	gi|55376212|ref|YP_134067.1|	-	3.8e-61	206.3	0.0	5.1e-61	205.9	0.0	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|55376212|ref|YP_134067.1|	-	5.5e-19	67.5	0.3	1.3e-18	66.3	0.2	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
CbiA	PF01656.18	gi|55376213|ref|YP_134068.1|	-	1.6e-26	92.9	0.0	2e-26	92.6	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|55376213|ref|YP_134068.1|	-	1.6e-13	50.8	0.2	6.4e-11	42.4	0.1	2.5	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|55376213|ref|YP_134068.1|	-	3.8e-08	32.7	0.1	9.5e-06	24.8	0.0	2.2	2	0	0	2	2	2	2	Anion-transporting	ATPase
MipZ	PF09140.6	gi|55376213|ref|YP_134068.1|	-	1.5e-07	30.8	0.8	0.00041	19.5	0.2	2.3	2	0	0	2	2	2	2	ATPase	MipZ
Fer4_NifH	PF00142.13	gi|55376213|ref|YP_134068.1|	-	0.00021	20.5	0.0	0.0025	17.0	0.0	2.2	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
YhjQ	PF06564.7	gi|55376213|ref|YP_134068.1|	-	0.00047	19.5	0.2	0.0025	17.2	0.1	2.0	2	0	0	2	2	2	1	YhjQ	protein
VirC1	PF07015.6	gi|55376213|ref|YP_134068.1|	-	0.00099	18.2	0.1	0.0034	16.4	0.0	1.8	2	0	0	2	2	2	1	VirC1	protein
AAA_25	PF13481.1	gi|55376213|ref|YP_134068.1|	-	0.0024	17.2	3.2	0.046	13.1	2.2	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|55376213|ref|YP_134068.1|	-	0.01	15.6	0.3	0.034	13.9	0.2	2.0	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|55376213|ref|YP_134068.1|	-	0.01	16.6	0.1	0.041	14.6	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
MIF4G_like	PF09088.6	gi|55376213|ref|YP_134068.1|	-	0.034	13.5	0.0	0.056	12.8	0.0	1.3	1	0	0	1	1	1	0	MIF4G	like
ATP_bind_1	PF03029.12	gi|55376213|ref|YP_134068.1|	-	0.046	13.2	0.1	4	6.9	0.0	2.5	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.1	gi|55376213|ref|YP_134068.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|55376213|ref|YP_134068.1|	-	0.11	11.8	0.4	0.33	10.3	0.1	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|55376213|ref|YP_134068.1|	-	0.13	11.9	0.0	0.33	10.6	0.0	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF2360	PF10152.4	gi|55376214|ref|YP_134069.1|	-	0.1	12.8	5.6	0.12	12.6	3.9	1.2	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
DUF1777	PF08648.7	gi|55376214|ref|YP_134069.1|	-	0.12	12.1	20.0	0.13	12.0	13.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1777)
DUF1875	PF08961.5	gi|55376214|ref|YP_134069.1|	-	0.13	11.5	8.9	0.17	11.2	6.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1875)
Pex14_N	PF04695.8	gi|55376214|ref|YP_134069.1|	-	0.27	11.3	7.9	0.31	11.0	5.5	1.2	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
PLRV_ORF5	PF01690.12	gi|55376214|ref|YP_134069.1|	-	0.42	9.7	9.8	0.43	9.6	6.8	1.0	1	0	0	1	1	1	0	Potato	leaf	roll	virus	readthrough	protein
Spore_coat_CotO	PF14153.1	gi|55376214|ref|YP_134069.1|	-	0.59	9.5	11.7	0.67	9.3	8.1	1.2	1	0	0	1	1	1	0	Spore	coat	protein	CotO
Trypan_PARP	PF05887.6	gi|55376214|ref|YP_134069.1|	-	0.74	9.6	2.7	1	9.1	1.9	1.2	1	0	0	1	1	1	0	Procyclic	acidic	repetitive	protein	(PARP)
DUF789	PF05623.7	gi|55376214|ref|YP_134069.1|	-	0.79	9.1	9.5	0.97	8.8	6.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF789)
DDRGK	PF09756.4	gi|55376214|ref|YP_134069.1|	-	1.6	8.0	14.9	2.5	7.4	10.3	1.4	1	0	0	1	1	1	0	DDRGK	domain
RR_TM4-6	PF06459.7	gi|55376214|ref|YP_134069.1|	-	1.7	8.4	9.0	1.9	8.2	6.3	1.2	1	0	0	1	1	1	0	Ryanodine	Receptor	TM	4-6
DUF1510	PF07423.6	gi|55376214|ref|YP_134069.1|	-	2.1	7.6	13.8	2.3	7.5	9.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1510)
Vfa1	PF08432.5	gi|55376214|ref|YP_134069.1|	-	2.3	8.1	14.2	2.9	7.8	9.9	1.1	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
DUF4175	PF13779.1	gi|55376214|ref|YP_134069.1|	-	2.9	5.4	20.5	3.4	5.2	14.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
Ycf1	PF05758.7	gi|55376214|ref|YP_134069.1|	-	3.6	5.1	9.4	4	5.0	6.5	1.0	1	0	0	1	1	1	0	Ycf1
SPX	PF03105.14	gi|55376214|ref|YP_134069.1|	-	3.8	7.1	13.9	4.2	7.0	9.6	1.1	1	0	0	1	1	1	0	SPX	domain
DHHW	PF14286.1	gi|55376214|ref|YP_134069.1|	-	3.9	6.6	7.2	4.8	6.4	5.0	1.1	1	0	0	1	1	1	0	DHHW	protein
YqfQ	PF14181.1	gi|55376214|ref|YP_134069.1|	-	4	7.4	11.4	5.6	6.9	7.9	1.2	1	0	0	1	1	1	0	YqfQ-like	protein
Ndc1_Nup	PF09531.5	gi|55376214|ref|YP_134069.1|	-	4.7	5.5	5.4	4.8	5.4	3.8	1.0	1	0	0	1	1	1	0	Nucleoporin	protein	Ndc1-Nup
DUF4557	PF15101.1	gi|55376214|ref|YP_134069.1|	-	6.7	6.5	11.2	7.7	6.3	7.8	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4557)
FAM60A	PF15396.1	gi|55376214|ref|YP_134069.1|	-	7	6.3	11.3	8.4	6.0	7.9	1.1	1	0	0	1	1	1	0	Protein	Family	FAM60A
Hid1	PF12722.2	gi|55376214|ref|YP_134069.1|	-	8.5	3.9	12.4	9.2	3.7	8.6	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
DDHD	PF02862.12	gi|55376214|ref|YP_134069.1|	-	9.8	5.8	13.9	13	5.5	9.7	1.1	1	0	0	1	1	1	0	DDHD	domain
zf-FCS	PF06467.9	gi|55376217|ref|YP_134072.1|	-	0.01	15.4	0.0	4.7	6.9	0.0	2.2	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ecl1	PF12855.2	gi|55376217|ref|YP_134072.1|	-	0.082	12.2	1.5	0.35	10.1	1.0	2.0	1	1	0	1	1	1	0	Life-span	regulatory	factor
DUF756	PF05506.7	gi|55376218|ref|YP_134073.1|	-	0.0012	19.2	0.7	0.0018	18.6	0.5	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF756)
DUF2970	PF11174.3	gi|55376218|ref|YP_134073.1|	-	0.053	13.1	1.2	9.3	5.9	0.4	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2970)
LTD	PF00932.14	gi|55376218|ref|YP_134073.1|	-	0.1	12.7	3.8	0.18	11.8	2.6	1.5	1	1	0	1	1	1	0	Lamin	Tail	Domain
DUF1469	PF07332.6	gi|55376218|ref|YP_134073.1|	-	0.33	10.6	3.8	0.48	10.1	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
DUF3482	PF11981.3	gi|55376218|ref|YP_134073.1|	-	3.8	6.6	5.0	5.3	6.1	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3482)
Glycoprotein_B	PF00606.13	gi|55376219|ref|YP_134074.1|	-	0.0036	15.4	1.0	0.0036	15.4	0.7	1.4	1	1	1	2	2	2	1	Herpesvirus	Glycoprotein	B
TrbL	PF04610.9	gi|55376219|ref|YP_134074.1|	-	0.088	12.4	3.4	0.12	12.1	2.3	1.2	1	0	0	1	1	1	0	TrbL/VirB6	plasmid	conjugal	transfer	protein
DUF4342	PF14242.1	gi|55376219|ref|YP_134074.1|	-	0.52	10.1	5.9	3.5	7.4	1.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4342)
WXG100	PF06013.7	gi|55376220|ref|YP_134075.1|	-	0.023	14.6	0.0	0.037	14.0	0.0	1.2	1	0	0	1	1	1	0	Proteins	of	100	residues	with	WXG
DUF2721	PF11026.3	gi|55376222|ref|YP_134077.1|	-	0.52	9.9	0.1	0.52	9.9	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
IncA	PF04156.9	gi|55376223|ref|YP_134078.1|	-	0.0026	17.3	0.5	0.81	9.2	0.4	2.5	2	0	0	2	2	2	2	IncA	protein
DUF2517	PF10725.4	gi|55376223|ref|YP_134078.1|	-	0.3	10.7	0.1	0.3	10.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2517)
Ail_Lom	PF06316.6	gi|55376224|ref|YP_134079.1|	-	0.054	12.9	0.2	8.7	5.7	0.0	2.2	2	0	0	2	2	2	0	Enterobacterial	Ail/Lom	protein
MCM	PF00493.18	gi|55376226|ref|YP_134081.1|	-	4e-61	206.6	0.0	5.4e-61	206.2	0.0	1.1	1	0	0	1	1	1	1	MCM2/3/5	family
AAA_5	PF07728.9	gi|55376226|ref|YP_134081.1|	-	1e-10	41.4	0.0	7.7e-10	38.6	0.0	2.4	2	1	1	3	3	3	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.16	gi|55376226|ref|YP_134081.1|	-	5.9e-10	38.6	0.1	4.2e-05	22.8	0.0	3.0	2	1	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MCM_N	PF14551.1	gi|55376226|ref|YP_134081.1|	-	5e-06	26.9	0.0	7.1e-05	23.2	0.0	2.4	2	0	0	2	2	2	1	MCM	N-terminal	domain
AAA	PF00004.24	gi|55376226|ref|YP_134081.1|	-	0.026	14.7	0.0	0.081	13.1	0.0	1.8	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Med26	PF08711.6	gi|55376226|ref|YP_134081.1|	-	0.034	13.6	0.1	0.067	12.7	0.0	1.5	1	0	0	1	1	1	0	TFIIS	helical	bundle-like	domain
Sigma54_activat	PF00158.21	gi|55376226|ref|YP_134081.1|	-	0.058	12.8	0.0	0.5	9.8	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_22	PF13401.1	gi|55376226|ref|YP_134081.1|	-	0.063	13.4	0.0	1	9.4	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|55376226|ref|YP_134081.1|	-	0.072	12.8	0.1	0.072	12.8	0.0	2.4	3	0	0	3	3	3	0	Part	of	AAA	domain
AAA_33	PF13671.1	gi|55376227|ref|YP_134082.1|	-	0.0023	17.7	0.0	0.32	10.8	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
zf-CCHC_3	PF13917.1	gi|55376227|ref|YP_134082.1|	-	0.17	11.6	0.0	0.33	10.7	0.0	1.4	1	0	0	1	1	1	0	Zinc	knuckle
AAA_22	PF13401.1	gi|55376227|ref|YP_134082.1|	-	0.2	11.7	0.0	0.42	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain