# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Excalibur PF05901.11 gi|55376188|ref|YP_134043.1| - 0.15 12.7 2.1 51 4.6 0.0 3.5 3 0 0 3 3 3 0 Excalibur calcium-binding domain DUF505 PF04458.12 gi|55376190|ref|YP_134045.1| - 1.3e-05 23.8 0.0 1.5e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.14 gi|55376190|ref|YP_134045.1| - 0.001 19.0 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|55376190|ref|YP_134045.1| - 0.001 18.8 0.0 0.0012 18.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|55376190|ref|YP_134045.1| - 0.0038 17.7 0.1 0.006 17.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|55376190|ref|YP_134045.1| - 0.0065 16.4 0.0 0.0091 16.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Replic_Relax PF13814.6 gi|55376190|ref|YP_134045.1| - 0.013 15.6 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.17 gi|55376190|ref|YP_134045.1| - 0.027 14.3 0.0 0.036 13.9 0.0 1.3 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_12 PF08461.10 gi|55376190|ref|YP_134045.1| - 0.048 13.6 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain LexA_DNA_bind PF01726.16 gi|55376190|ref|YP_134045.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_34 PF13601.6 gi|55376190|ref|YP_134045.1| - 0.19 11.9 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HHH_5 PF14520.6 gi|55376193|ref|YP_134048.1| - 1.4e-05 25.6 0.0 1.7e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|55376193|ref|YP_134048.1| - 4.9e-05 23.0 0.1 0.00033 20.4 0.2 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|55376193|ref|YP_134048.1| - 7.2e-05 22.8 0.1 9.1e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif CARDB PF07705.11 gi|55376195|ref|YP_134050.1| - 0.00093 19.4 0.0 0.0043 17.3 0.0 2.1 1 1 0 1 1 1 1 CARDB AAA_16 PF13191.6 gi|55376196|ref|YP_134051.1| - 2.9e-09 37.5 4.4 4.5e-08 33.7 0.6 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|55376196|ref|YP_134051.1| - 5.8e-07 29.9 0.0 1.7e-06 28.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|55376196|ref|YP_134051.1| - 0.00033 21.1 0.0 0.0012 19.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|55376196|ref|YP_134051.1| - 0.00043 20.6 2.0 0.00065 20.0 0.8 1.8 2 0 0 2 2 2 1 AAA C-terminal domain DUF815 PF05673.13 gi|55376196|ref|YP_134051.1| - 0.019 14.1 0.0 0.034 13.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_5 PF07728.14 gi|55376196|ref|YP_134051.1| - 0.021 14.8 0.0 0.42 10.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|55376196|ref|YP_134051.1| - 0.021 14.5 0.0 0.039 13.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RuvB_N PF05496.12 gi|55376196|ref|YP_134051.1| - 0.031 14.0 0.0 0.085 12.6 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|55376196|ref|YP_134051.1| - 0.077 13.0 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_33 PF13671.6 gi|55376196|ref|YP_134051.1| - 0.1 12.8 0.6 0.75 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|55376196|ref|YP_134051.1| - 0.1 12.6 0.0 0.35 10.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|55376196|ref|YP_134051.1| - 0.1 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|55376196|ref|YP_134051.1| - 0.11 11.6 0.0 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|55376196|ref|YP_134051.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.7 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|55376196|ref|YP_134051.1| - 0.13 12.6 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase YpzI PF14140.6 gi|55376199|ref|YP_134054.1| - 0.036 13.8 0.4 0.084 12.7 0.4 1.5 1 0 0 1 1 1 0 YpzI-like protein zf-Di19 PF05605.12 gi|55376200|ref|YP_134055.1| - 0.041 14.2 0.3 0.053 13.8 0.3 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF1272 PF06906.11 gi|55376200|ref|YP_134055.1| - 0.057 13.5 1.2 0.53 10.4 1.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C2H2_9 PF16293.5 gi|55376200|ref|YP_134055.1| - 0.11 12.4 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (1 copy) zf_Rg PF17915.1 gi|55376201|ref|YP_134056.1| - 0.073 12.5 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 Reverse gyrase zinc finger Lycopene_cycl PF05834.12 gi|55376202|ref|YP_134057.1| - 0.12 11.4 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Lycopene cyclase protein zf-IS66 PF13005.7 gi|55376203|ref|YP_134058.1| - 0.084 13.3 3.2 11 6.6 0.6 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 YhfH PF14149.6 gi|55376203|ref|YP_134058.1| - 0.11 12.5 2.4 3.9 7.5 0.1 2.9 2 0 0 2 2 2 0 YhfH-like protein FAM195 PF14799.6 gi|55376203|ref|YP_134058.1| - 0.11 12.8 0.4 0.84 10.0 0.0 2.1 2 0 0 2 2 2 0 FAM195 family Zn-ribbon_8 PF09723.10 gi|55376203|ref|YP_134058.1| - 0.65 10.2 14.6 0.16 12.1 0.8 3.3 2 1 1 3 3 3 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|55376203|ref|YP_134058.1| - 6.9 6.7 9.7 14 5.6 1.6 2.7 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|55376205|ref|YP_134060.1| - 0.0062 16.7 2.6 0.0098 16.0 2.6 1.3 1 0 0 1 1 1 1 Piccolo Zn-finger Mu-like_Com PF10122.9 gi|55376206|ref|YP_134061.1| - 0.0095 15.4 0.2 0.015 14.7 0.2 1.4 1 0 0 1 1 1 1 Mu-like prophage protein Com Zn_Tnp_IS1 PF03811.13 gi|55376206|ref|YP_134061.1| - 0.013 15.2 0.6 0.026 14.2 0.6 1.5 1 0 0 1 1 1 0 InsA N-terminal domain zf-ribbon_3 PF13248.6 gi|55376206|ref|YP_134061.1| - 0.029 13.8 0.4 0.074 12.5 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DUF2752 PF10825.8 gi|55376206|ref|YP_134061.1| - 0.043 13.9 0.2 0.043 13.9 0.2 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-DNL PF05180.12 gi|55376206|ref|YP_134061.1| - 0.062 13.3 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 DNL zinc finger Zn-ribbon_8 PF09723.10 gi|55376206|ref|YP_134061.1| - 0.066 13.3 0.7 0.2 11.8 0.2 1.9 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_S27e PF01667.17 gi|55376206|ref|YP_134061.1| - 0.075 12.8 0.5 0.14 11.9 0.3 1.5 2 0 0 2 2 2 0 Ribosomal protein S27 Zn_ribbon_SprT PF17283.2 gi|55376206|ref|YP_134061.1| - 0.092 12.7 0.8 0.092 12.7 0.8 2.1 3 1 0 3 3 3 0 SprT-like zinc ribbon domain Jiv90 PF14901.6 gi|55376206|ref|YP_134061.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Cleavage inducing molecular chaperone zf-ACC PF17848.1 gi|55376206|ref|YP_134061.1| - 0.28 11.3 1.6 0.82 9.8 0.3 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Cytochrome_P460 PF16694.5 gi|55376207|ref|YP_134062.1| - 0.047 14.0 0.3 0.054 13.8 0.3 1.1 1 0 0 1 1 1 0 Cytochrome P460 Rad50_zn_hook PF04423.14 gi|55376209|ref|YP_134064.1| - 0.033 14.0 0.2 0.072 12.9 0.2 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif Zn_Tnp_IS91 PF14319.6 gi|55376209|ref|YP_134064.1| - 0.45 10.6 5.0 0.083 12.9 1.0 1.8 2 0 0 2 2 2 0 Transposase zinc-binding domain Etmic-2 PF06670.11 gi|55376210|ref|YP_134065.1| - 0.1 11.5 0.1 0.12 11.3 0.1 1.0 1 0 0 1 1 1 0 Microneme protein Etmic-2 OrfB_Zn_ribbon PF07282.11 gi|55376211|ref|YP_134066.1| - 1.6e-23 82.4 0.2 4e-23 81.1 0.2 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|55376211|ref|YP_134066.1| - 0.044 13.8 0.4 0.085 12.9 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon C1_2 PF03107.16 gi|55376211|ref|YP_134066.1| - 0.1 12.9 0.2 0.22 11.9 0.2 1.5 1 0 0 1 1 1 0 C1 domain zinc_ribbon_2 PF13240.6 gi|55376211|ref|YP_134066.1| - 0.14 11.9 1.0 11 5.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|55376211|ref|YP_134066.1| - 0.14 12.2 0.2 0.46 10.5 0.2 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|55376211|ref|YP_134066.1| - 0.24 11.1 3.6 0.35 10.6 1.0 2.5 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.16 gi|55376211|ref|YP_134066.1| - 0.83 9.6 3.8 39 4.2 4.3 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_IS605 PF01385.19 gi|55376212|ref|YP_134067.1| - 4.9e-32 110.7 0.1 1.2e-31 109.4 0.2 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|55376212|ref|YP_134067.1| - 4.4e-20 71.4 0.3 1.1e-19 70.1 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain AAA_31 PF13614.6 gi|55376213|ref|YP_134068.1| - 4e-33 114.8 0.0 1.1e-32 113.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|55376213|ref|YP_134068.1| - 1.2e-15 57.7 0.0 1.5e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|55376213|ref|YP_134068.1| - 3.6e-12 46.3 0.3 4.1e-10 39.5 0.0 2.4 2 1 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|55376213|ref|YP_134068.1| - 4.5e-08 32.6 0.1 1.2e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|55376213|ref|YP_134068.1| - 2.2e-07 30.6 0.2 9.6e-05 22.0 0.2 2.3 1 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|55376213|ref|YP_134068.1| - 4.6e-06 26.1 1.1 0.0046 16.3 0.3 2.3 2 0 0 2 2 2 2 ATPase MipZ Fer4_NifH PF00142.18 gi|55376213|ref|YP_134068.1| - 0.00015 21.3 0.0 0.0035 16.8 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|55376213|ref|YP_134068.1| - 0.0009 18.9 3.2 0.11 12.0 0.0 2.6 3 0 0 3 3 3 2 AAA domain VirC1 PF07015.11 gi|55376213|ref|YP_134068.1| - 0.0012 18.2 0.1 0.0041 16.4 0.0 1.8 2 0 0 2 2 2 1 VirC1 protein MIF4G_like PF09088.11 gi|55376213|ref|YP_134068.1| - 0.062 13.1 0.0 0.094 12.5 0.0 1.3 1 0 0 1 1 1 0 MIF4G like ATP_bind_1 PF03029.17 gi|55376213|ref|YP_134068.1| - 0.082 12.7 0.1 4.5 7.0 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_26 PF13500.6 gi|55376213|ref|YP_134068.1| - 0.14 11.9 0.1 2 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|55376213|ref|YP_134068.1| - 0.2 11.3 0.4 0.59 9.7 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Pex14_N PF04695.13 gi|55376214|ref|YP_134069.1| - 0.44 11.2 10.6 0.54 10.9 10.6 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Apt1 PF10351.9 gi|55376214|ref|YP_134069.1| - 0.78 8.5 10.8 0.77 8.6 10.8 1.0 1 0 0 1 1 1 0 Golgi-body localisation protein domain SPATA3 PF15662.5 gi|55376214|ref|YP_134069.1| - 0.88 10.2 10.9 1.1 9.9 10.9 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated protein 3 family CCDC53 PF10152.9 gi|55376214|ref|YP_134069.1| - 1.1 9.7 11.5 1.6 9.2 11.5 1.3 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex DUF789 PF05623.12 gi|55376214|ref|YP_134069.1| - 1.1 8.9 10.5 1.5 8.5 10.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF789) Presenilin PF01080.17 gi|55376214|ref|YP_134069.1| - 1.7 7.3 15.3 1.8 7.2 15.3 1.0 1 0 0 1 1 1 0 Presenilin MDM10 PF12519.8 gi|55376214|ref|YP_134069.1| - 1.8 7.4 7.3 2.1 7.1 7.3 1.0 1 0 0 1 1 1 0 Mitochondrial distribution and morphology protein 10 RR_TM4-6 PF06459.12 gi|55376214|ref|YP_134069.1| - 1.8 8.4 12.5 2 8.2 12.5 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 DDRGK PF09756.9 gi|55376214|ref|YP_134069.1| - 2.7 7.5 16.3 4 7.0 16.3 1.3 1 0 0 1 1 1 0 DDRGK domain Zip PF02535.22 gi|55376214|ref|YP_134069.1| - 3.9 6.6 4.1 3.9 6.6 4.1 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter FAM60A PF15396.6 gi|55376214|ref|YP_134069.1| - 5.6 6.9 10.4 6.7 6.7 10.4 1.1 1 0 0 1 1 1 0 Protein Family FAM60A Neur_chan_memb PF02932.16 gi|55376214|ref|YP_134069.1| - 5.9 6.9 9.4 6.5 6.7 9.4 1.1 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Spt20 PF12090.8 gi|55376214|ref|YP_134069.1| - 7.8 6.0 18.9 10 5.6 18.9 1.2 1 0 0 1 1 1 0 Spt20 family ALMT PF11744.8 gi|55376214|ref|YP_134069.1| - 8 5.2 9.0 9.2 5.0 9.0 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter Sec62 PF03839.16 gi|55376214|ref|YP_134069.1| - 9.5 5.7 8.7 11 5.5 8.7 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 zf-FCS PF06467.14 gi|55376217|ref|YP_134072.1| - 0.013 15.5 0.0 3.2 7.8 0.0 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Lar_restr_allev PF14354.6 gi|55376217|ref|YP_134072.1| - 0.076 13.4 0.1 0.12 12.8 0.1 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar RsdA_SigD_bd PF16751.5 gi|55376217|ref|YP_134072.1| - 0.08 13.2 4.0 0.5 10.7 0.6 2.6 1 1 1 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region ALMS_repeat PF18727.1 gi|55376218|ref|YP_134073.1| - 0.014 15.2 2.1 0.031 14.2 1.0 2.0 2 0 0 2 2 2 0 Alstrom syndrome repeat DUF756 PF05506.12 gi|55376218|ref|YP_134073.1| - 0.045 14.7 0.6 0.069 14.1 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF756) DUF2970 PF11174.8 gi|55376218|ref|YP_134073.1| - 0.053 13.4 1.3 7.9 6.4 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) DUF1616 PF07760.11 gi|55376218|ref|YP_134073.1| - 0.25 10.7 4.4 0.46 9.8 4.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1616) NBD_C PF17042.5 gi|55376219|ref|YP_134074.1| - 0.056 14.0 0.0 0.073 13.6 0.0 1.2 1 0 0 1 1 1 0 Nucleotide-binding C-terminal domain DUF4342 PF14242.6 gi|55376219|ref|YP_134074.1| - 7 6.7 6.5 26 4.9 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) WXG100 PF06013.12 gi|55376220|ref|YP_134075.1| - 0.028 14.6 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 Proteins of 100 residues with WXG MerC PF03203.14 gi|55376223|ref|YP_134078.1| - 0.042 14.3 3.5 0.64 10.5 0.0 2.4 2 0 0 2 2 2 0 MerC mercury resistance protein DUF2517 PF10725.9 gi|55376223|ref|YP_134078.1| - 0.28 11.0 0.1 0.28 11.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) Ail_Lom PF06316.11 gi|55376224|ref|YP_134079.1| - 0.066 12.9 0.2 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Enterobacterial Ail/Lom protein MCM PF00493.23 gi|55376226|ref|YP_134081.1| - 1.2e-47 161.9 0.0 1.8e-47 161.4 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|55376226|ref|YP_134081.1| - 2.2e-15 56.6 0.0 3.9e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 MCM OB domain AAA_5 PF07728.14 gi|55376226|ref|YP_134081.1| - 7.1e-11 42.3 0.0 5.3e-10 39.4 0.0 2.4 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|55376226|ref|YP_134081.1| - 5.7e-10 38.9 0.1 4e-05 23.1 0.0 3.0 2 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_lid PF17855.1 gi|55376226|ref|YP_134081.1| - 1e-07 32.3 0.2 2.5e-07 31.0 0.2 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|55376226|ref|YP_134081.1| - 1.4e-05 25.6 0.0 3.8e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 MCM N-terminal domain AAA_22 PF13401.6 gi|55376226|ref|YP_134081.1| - 0.026 14.8 0.1 0.51 10.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|55376226|ref|YP_134081.1| - 0.028 14.8 0.0 0.085 13.3 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|55376226|ref|YP_134081.1| - 0.068 12.9 0.0 0.6 9.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain PCP_red PF08369.10 gi|55376226|ref|YP_134081.1| - 0.089 13.0 1.0 0.24 11.7 1.0 1.7 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit AAA_16 PF13191.6 gi|55376226|ref|YP_134081.1| - 0.11 12.8 0.6 0.49 10.8 0.6 2.3 1 1 0 1 1 1 0 AAA ATPase domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006391.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006391.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006391.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006391.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:16:29 2019 # [ok]