# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- TRAM PF01938.15 gi|55376146|ref|YP_134002.1| - 2.9e-13 49.3 5.6 1.4e-12 47.1 2.6 2.1 2 0 0 2 2 2 1 TRAM domain DUF3553 PF12073.3 gi|55376146|ref|YP_134002.1| - 0.038 13.3 0.3 0.079 12.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) Phage_integrase PF00589.17 gi|55376147|ref|YP_134003.1| - 4.5e-10 39.4 0.0 5.3e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|55376147|ref|YP_134003.1| - 1e-09 38.4 0.0 1.3e-09 38.1 0.0 1.0 1 0 0 1 1 1 1 Integrase PemK PF02452.12 gi|55376148|ref|YP_134004.1| - 0.002 18.2 0.0 0.0023 18.0 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|55376149|ref|YP_134005.1| - 9.3e-08 31.6 0.0 1.3e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|55376149|ref|YP_134005.1| - 2.5e-05 23.7 0.9 2.8e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|55376149|ref|YP_134005.1| - 2.7e-05 23.4 0.0 4.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|55376149|ref|YP_134005.1| - 2.8e-05 23.7 0.0 3.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|55376149|ref|YP_134005.1| - 0.00029 20.8 0.0 0.00047 20.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator Sulfolobus_pRN PF05584.6 gi|55376149|ref|YP_134005.1| - 0.0021 18.0 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_Crp_2 PF13545.1 gi|55376149|ref|YP_134005.1| - 0.0021 17.8 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|55376149|ref|YP_134005.1| - 0.0053 16.4 0.0 0.0086 15.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|55376149|ref|YP_134005.1| - 0.006 16.3 0.0 0.009 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|55376149|ref|YP_134005.1| - 0.007 16.6 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|55376149|ref|YP_134005.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|55376150|ref|YP_134006.1| - 6.3e-15 54.7 1.2 7.8e-15 54.4 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|55376150|ref|YP_134006.1| - 0.00011 22.3 0.0 0.00015 21.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|55376150|ref|YP_134006.1| - 0.0014 18.4 0.1 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|55376150|ref|YP_134006.1| - 0.0069 16.0 0.1 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF387 PF04079.11 gi|55376150|ref|YP_134006.1| - 0.0077 15.6 0.1 0.0095 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) Penicillinase_R PF03965.11 gi|55376150|ref|YP_134006.1| - 0.11 12.5 0.0 0.12 12.4 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor MarR_2 PF12802.2 gi|55376150|ref|YP_134006.1| - 0.14 11.8 0.3 1.4 8.6 0.0 2.4 3 0 0 3 3 3 0 MarR family tRNA_anti-codon PF01336.20 gi|55376151|ref|YP_134007.1| - 0.00052 19.8 0.5 0.003 17.3 0.1 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain MTHFR_C PF12225.3 gi|55376151|ref|YP_134007.1| - 0.078 12.4 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 Methylene-tetrahydrofolate reductase C terminal Decorin_bind PF02352.10 gi|55376153|ref|YP_134009.1| - 0.13 12.2 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Decorin binding protein HTH_20 PF12840.2 gi|55376155|ref|YP_134011.1| - 3.8e-05 23.4 0.0 0.00018 21.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|55376155|ref|YP_134011.1| - 0.0005 19.3 0.0 0.0024 17.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|55376155|ref|YP_134011.1| - 0.0015 18.0 0.0 0.014 14.8 0.0 2.5 2 1 1 3 3 3 1 LexA DNA binding domain HTH_11 PF08279.7 gi|55376155|ref|YP_134011.1| - 0.0039 16.8 0.1 0.036 13.7 0.0 2.5 3 1 0 3 3 3 1 HTH domain MarR PF01047.17 gi|55376155|ref|YP_134011.1| - 0.0054 16.4 0.0 0.19 11.4 0.0 2.5 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|55376155|ref|YP_134011.1| - 0.0091 15.6 0.1 0.21 11.2 0.0 2.4 2 1 1 3 3 3 1 MarR family HTH_27 PF13463.1 gi|55376155|ref|YP_134011.1| - 0.016 15.4 0.0 0.052 13.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|55376155|ref|YP_134011.1| - 0.02 14.6 0.0 0.047 13.4 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|55376155|ref|YP_134011.1| - 0.041 14.0 0.0 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator SLH PF00395.15 gi|55376155|ref|YP_134011.1| - 0.054 13.2 0.0 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 S-layer homology domain HTH_5 PF01022.15 gi|55376155|ref|YP_134011.1| - 0.092 12.4 0.0 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family CDC37_C PF08564.5 gi|55376155|ref|YP_134011.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.5 1 1 0 1 1 1 0 Cdc37 C terminal domain CbiA PF01656.18 gi|55376157|ref|YP_134013.1| - 3.8e-26 91.6 0.0 4.7e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|55376157|ref|YP_134013.1| - 6.3e-09 35.9 0.0 1.5e-08 34.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|55376157|ref|YP_134013.1| - 1.9e-06 27.1 0.4 0.00013 21.1 0.2 2.2 1 1 0 1 1 1 1 ATPase MipZ YhjQ PF06564.7 gi|55376157|ref|YP_134013.1| - 0.0013 18.1 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|55376157|ref|YP_134013.1| - 0.0033 16.5 0.1 0.0077 15.3 0.1 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|55376157|ref|YP_134013.1| - 0.065 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Usp PF00582.21 gi|55376157|ref|YP_134013.1| - 0.068 13.3 0.1 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 Universal stress protein family DUF1628 PF07790.6 gi|55376158|ref|YP_134014.1| - 2.7e-25 88.9 3.5 2.7e-25 88.9 2.4 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) E1-E2_ATPase PF00122.15 gi|55376158|ref|YP_134014.1| - 0.31 10.0 2.7 0.28 10.1 0.1 1.8 2 0 0 2 2 2 0 E1-E2 ATPase ParBc PF02195.13 gi|55376159|ref|YP_134015.1| - 8.4e-05 22.6 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain Bactofilin PF04519.8 gi|55376161|ref|YP_134017.1| - 4.1e-09 36.3 20.4 7.2e-08 32.3 6.3 2.5 2 1 1 3 3 3 2 Polymer-forming cytoskeletal DUF3494 PF11999.3 gi|55376161|ref|YP_134017.1| - 6.4e-06 25.9 3.9 0.0019 17.8 0.4 2.7 2 1 1 3 3 3 2 Protein of unknown function (DUF3494) DUF1258 PF06869.7 gi|55376161|ref|YP_134017.1| - 0.0012 17.9 0.1 1.4 7.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1258) Toxin_50 PF15530.1 gi|55376161|ref|YP_134017.1| - 0.098 12.5 10.5 6.2 6.7 0.2 3.2 1 1 2 3 3 3 0 Putative toxin 50 DUF2572 PF10833.3 gi|55376161|ref|YP_134017.1| - 0.14 11.5 8.7 1.3 8.4 0.9 3.0 1 1 3 4 4 4 0 Protein of unknown function (DUF2572) CopD PF05425.8 gi|55376162|ref|YP_134018.1| - 0.016 15.3 1.7 0.016 15.3 1.2 2.5 2 1 0 2 2 2 0 Copper resistance protein D DUF3611 PF12263.3 gi|55376162|ref|YP_134018.1| - 0.032 13.6 0.4 0.051 12.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) DUF1034 PF06280.7 gi|55376163|ref|YP_134019.1| - 0.0089 16.4 2.1 0.0089 16.4 0.6 1.5 2 0 0 2 2 2 1 Fn3-like domain (DUF1034) DUF1372 PF07116.6 gi|55376163|ref|YP_134019.1| - 0.12 12.3 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1372) TAT_signal PF10518.4 gi|55376164|ref|YP_134020.1| - 0.34 11.0 3.0 1.5 9.0 2.1 2.1 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FaeA PF04703.7 gi|55376165|ref|YP_134021.1| - 0.0033 17.5 0.0 0.0087 16.2 0.0 1.7 1 0 0 1 1 1 1 FaeA-like protein HTH_DeoR PF08220.7 gi|55376165|ref|YP_134021.1| - 0.033 13.7 0.0 0.1 12.1 0.0 1.8 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|55376165|ref|YP_134021.1| - 0.039 13.6 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain FRD2 PF03197.8 gi|55376168|ref|YP_134024.1| - 0.14 12.7 0.0 2.3 8.8 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage FRD2 protein zf-CHY PF05495.7 gi|55376168|ref|YP_134024.1| - 0.42 10.7 4.1 8.4 6.6 1.3 2.3 2 0 0 2 2 2 0 CHY zinc finger YpzI PF14140.1 gi|55376171|ref|YP_134027.1| - 0.03 13.8 0.2 0.068 12.6 0.1 1.6 1 0 0 1 1 1 0 YpzI-like protein Radical_SAM PF04055.16 gi|55376172|ref|YP_134028.1| - 0.028 14.6 0.1 0.059 13.5 0.0 1.5 2 0 0 2 2 2 0 Radical SAM superfamily zf-C2H2 PF00096.21 gi|55376174|ref|YP_134030.1| - 0.0075 16.5 0.2 0.015 15.6 0.2 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|55376174|ref|YP_134030.1| - 0.026 14.8 0.2 0.052 13.8 0.1 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2_2 PF12756.2 gi|55376174|ref|YP_134030.1| - 0.14 12.2 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) DUF457 PF04307.9 gi|55376175|ref|YP_134031.1| - 1.5e-18 66.6 10.4 1.8e-18 66.3 7.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DEAD PF00270.24 gi|55376176|ref|YP_134032.1| - 1.6e-23 83.0 0.0 2.9e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|55376176|ref|YP_134032.1| - 2.5e-18 66.4 1.1 9e-18 64.6 0.4 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|55376176|ref|YP_134032.1| - 3.2e-10 39.7 0.0 9.9e-10 38.1 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|55376176|ref|YP_134032.1| - 5.3e-05 23.1 0.0 0.0001 22.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PAPS_reduct PF01507.14 gi|55376178|ref|YP_134034.1| - 2.7e-15 56.6 0.0 4.1e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|55376178|ref|YP_134034.1| - 0.019 14.3 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP-binding region ATP_bind_3 PF01171.15 gi|55376178|ref|YP_134034.1| - 0.038 13.4 0.0 0.11 11.9 0.0 1.7 1 1 0 1 1 1 0 PP-loop family Ish1 PF10281.4 gi|55376178|ref|YP_134034.1| - 0.074 13.1 0.1 0.26 11.4 0.1 1.9 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein DUF2141 PF09912.4 gi|55376180|ref|YP_134036.1| - 0.05 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2141) RHH_1 PF01402.16 gi|55376181|ref|YP_134037.1| - 2.5e-08 33.4 0.2 2.5e-08 33.4 0.1 3.6 4 0 0 4 4 4 1 Ribbon-helix-helix protein, copG family Prominin PF05478.6 gi|55376181|ref|YP_134037.1| - 0.0029 15.2 2.9 0.0029 15.2 2.0 2.0 2 0 0 2 2 2 1 Prominin Cep57_CLD_2 PF14197.1 gi|55376181|ref|YP_134037.1| - 0.034 14.1 23.2 0.073 13.0 3.7 3.6 2 1 1 3 3 3 0 Centrosome localisation domain of PPC89 CSTF_C PF14304.1 gi|55376181|ref|YP_134037.1| - 0.094 12.0 2.1 11 5.3 0.0 2.9 2 0 0 2 2 2 0 Transcription termination and cleavage factor C-terminal WXG100 PF06013.7 gi|55376181|ref|YP_134037.1| - 0.11 12.5 6.7 0.18 11.7 1.1 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG AAA_13 PF13166.1 gi|55376181|ref|YP_134037.1| - 0.13 10.6 11.8 0.17 10.3 8.2 1.1 1 0 0 1 1 1 0 AAA domain EMP24_GP25L PF01105.19 gi|55376181|ref|YP_134037.1| - 0.31 10.7 11.6 0.02 14.6 2.9 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Activator-TraM PF11657.3 gi|55376181|ref|YP_134037.1| - 0.9 9.0 12.0 0.18 11.2 5.1 2.0 1 1 1 2 2 2 0 Transcriptional activator TraM PilJ PF13675.1 gi|55376181|ref|YP_134037.1| - 1.1 9.6 7.1 0.57 10.5 1.2 2.6 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Semialdhyde_dhC PF02774.13 gi|55376181|ref|YP_134037.1| - 1.5 8.6 6.9 0.76 9.6 0.8 2.2 1 1 0 2 2 2 0 Semialdehyde dehydrogenase, dimerisation domain PLAC9 PF15205.1 gi|55376181|ref|YP_134037.1| - 4.5 7.6 6.2 3 8.1 0.2 2.8 2 2 0 2 2 2 0 Placenta-specific protein 9 DUF3373 PF11853.3 gi|55376181|ref|YP_134037.1| - 5 5.5 5.4 6 5.2 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) COG2 PF06148.6 gi|55376181|ref|YP_134037.1| - 5.7 6.8 11.6 5.2 6.9 3.8 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Ax_dynein_light PF10211.4 gi|55376181|ref|YP_134037.1| - 8.7 6.1 27.0 0.095 12.5 10.2 2.5 1 1 1 2 2 2 0 Axonemal dynein light chain ORF6C PF10552.4 gi|55376181|ref|YP_134037.1| - 9 6.0 12.5 0.52 10.0 3.2 2.6 1 1 1 3 3 3 0 ORF6C domain Mu-like_Com PF10122.4 gi|55376182|ref|YP_134038.1| - 0.0063 15.5 0.2 2.1 7.4 0.0 2.1 2 0 0 2 2 2 2 Mu-like prophage protein Com C1_1 PF00130.17 gi|55376182|ref|YP_134038.1| - 0.011 15.4 0.4 0.016 14.9 0.2 1.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_5 PF13719.1 gi|55376182|ref|YP_134038.1| - 0.013 15.0 2.1 0.06 12.9 1.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|55376182|ref|YP_134038.1| - 0.016 14.8 2.0 0.1 12.3 1.4 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|55376182|ref|YP_134038.1| - 0.042 13.2 0.1 0.046 13.0 0.1 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-CHY PF05495.7 gi|55376182|ref|YP_134038.1| - 0.049 13.7 0.3 0.057 13.5 0.2 1.2 1 0 0 1 1 1 0 CHY zinc finger zinc_ribbon_2 PF13240.1 gi|55376182|ref|YP_134038.1| - 0.057 12.9 1.6 0.23 10.9 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|55376182|ref|YP_134038.1| - 0.058 12.6 0.3 0.53 9.5 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|55376182|ref|YP_134038.1| - 0.073 12.7 0.5 0.083 12.5 0.3 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Cytochrom_c3_2 PF14537.1 gi|55376182|ref|YP_134038.1| - 0.075 13.3 1.4 0.087 13.1 0.9 1.2 1 0 0 1 1 1 0 Cytochrome c3 DUF35_N PF12172.3 gi|55376182|ref|YP_134038.1| - 0.083 12.8 3.6 0.76 9.7 0.6 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) LRV_FeS PF05484.6 gi|55376182|ref|YP_134038.1| - 0.088 12.4 0.5 0.11 12.1 0.4 1.1 1 0 0 1 1 1 0 LRV protein FeS4 cluster DZR PF12773.2 gi|55376182|ref|YP_134038.1| - 0.098 12.4 1.0 0.12 12.1 0.7 1.3 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|55376182|ref|YP_134038.1| - 0.12 12.3 2.7 0.44 10.5 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|55376182|ref|YP_134038.1| - 0.21 11.4 3.5 0.43 10.4 2.5 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|55376182|ref|YP_134038.1| - 0.23 11.4 2.9 2.9 7.9 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Cytochrome_C7 PF14522.1 gi|55376182|ref|YP_134038.1| - 0.35 10.5 4.3 0.52 9.9 3.0 1.4 1 1 0 1 1 1 0 Cytochrome c7 RNA_POL_M_15KD PF02150.11 gi|55376182|ref|YP_134038.1| - 0.36 10.5 3.6 0.37 10.5 0.1 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|55376182|ref|YP_134038.1| - 0.39 10.2 4.7 11 5.6 3.3 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|55376182|ref|YP_134038.1| - 0.99 9.1 4.2 0.99 9.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PadR PF03551.9 gi|55376184|ref|YP_134040.1| - 0.00011 21.9 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|55376184|ref|YP_134040.1| - 0.00076 19.0 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|55376184|ref|YP_134040.1| - 0.0012 19.0 0.1 0.0021 18.3 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|55376184|ref|YP_134040.1| - 0.0022 17.7 0.0 0.0032 17.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4364 PF14277.1 gi|55376184|ref|YP_134040.1| - 0.0029 17.2 0.0 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) Replic_Relax PF13814.1 gi|55376184|ref|YP_134040.1| - 0.0039 17.0 0.0 0.0048 16.7 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation DUF505 PF04458.7 gi|55376184|ref|YP_134040.1| - 0.0059 14.7 0.0 0.0065 14.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Rrf2 PF02082.15 gi|55376184|ref|YP_134040.1| - 0.0063 16.6 0.0 0.0086 16.1 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.1 gi|55376184|ref|YP_134040.1| - 0.023 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|55376184|ref|YP_134040.1| - 0.024 14.3 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|55376184|ref|YP_134040.1| - 0.028 14.0 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|55376184|ref|YP_134040.1| - 0.028 13.8 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|55376184|ref|YP_134040.1| - 0.034 13.6 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Mrr_N PF14338.1 gi|55376184|ref|YP_134040.1| - 0.035 14.1 0.0 0.047 13.7 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain PaaX PF07848.7 gi|55376184|ref|YP_134040.1| - 0.038 13.9 0.0 0.048 13.6 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein Ribosomal_S19e PF01090.14 gi|55376184|ref|YP_134040.1| - 0.045 13.1 0.0 0.066 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_34 PF13601.1 gi|55376184|ref|YP_134040.1| - 0.054 13.5 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|55376184|ref|YP_134040.1| - 0.088 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain RPA_C PF08784.6 gi|55376184|ref|YP_134040.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal AAA_33 PF13671.1 gi|55376186|ref|YP_134042.1| - 0.00078 19.3 0.0 0.41 10.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain zf-CCHC_3 PF13917.1 gi|55376186|ref|YP_134042.1| - 0.11 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Zinc knuckle AAA_22 PF13401.1 gi|55376186|ref|YP_134042.1| - 0.19 11.8 0.0 0.37 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain