#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|55376145|ref|YP_134001.1|	128	DUF455	Protein	11.8	0.0	7.1e-06	0.13	145	180	18	53	6	58	0.87
gi|55376146|ref|YP_134002.1|	138	TRAM	TRAM	2.1	0.0	0.011	1.9e+02	2	14	36	48	35	55	0.83
gi|55376146|ref|YP_134002.1|	138	TRAM	TRAM	46.9	3.9	1.1e-16	2e-12	2	62	74	131	73	131	0.95
gi|55376147|ref|YP_134003.1|	198	Phage_integrase	Phage	36.9	0.0	3.2e-13	2.9e-09	2	168	14	182	13	185	0.81
gi|55376147|ref|YP_134003.1|	198	Integrase_1	Integrase	20.1	0.0	6.1e-08	0.00055	8	149	9	153	2	153	0.75
gi|55376149|ref|YP_134005.1|	107	MarR_2	MarR	33.0	0.0	2.8e-11	4.2e-08	8	54	25	71	16	82	0.93
gi|55376149|ref|YP_134005.1|	107	TrmB	Sugar-specific	24.0	0.0	1.8e-08	2.7e-05	22	55	38	71	27	76	0.90
gi|55376149|ref|YP_134005.1|	107	HTH_IclR	IclR	21.7	0.0	8.5e-08	0.00013	7	51	26	71	25	72	0.91
gi|55376149|ref|YP_134005.1|	107	HTH_IclR	IclR	-2.5	0.2	3.2	4.8e+03	25	35	88	98	83	99	0.71
gi|55376149|ref|YP_134005.1|	107	HTH_Crp_2	Crp-like	21.2	0.0	1.4e-07	0.0002	21	67	38	85	25	86	0.82
gi|55376149|ref|YP_134005.1|	107	Rrf2	Transcriptional	19.8	0.0	4.9e-07	0.00074	11	57	25	70	18	74	0.91
gi|55376149|ref|YP_134005.1|	107	HTH_24	Winged	15.5	0.0	6.1e-06	0.0091	7	48	26	69	24	69	0.85
gi|55376149|ref|YP_134005.1|	107	HTH_20	Helix-turn-helix	16.0	0.0	6.4e-06	0.0095	14	58	26	72	25	75	0.92
gi|55376149|ref|YP_134005.1|	107	MarR	MarR	15.1	0.0	1.1e-05	0.016	16	48	37	69	24	71	0.82
gi|55376149|ref|YP_134005.1|	107	Sulfolobus_pRN	Sulfolobus	13.4	0.0	4.1e-05	0.062	17	53	37	73	21	82	0.82
gi|55376149|ref|YP_134005.1|	107	HTH_27	Winged	12.8	0.0	8.6e-05	0.13	2	51	22	71	22	74	0.81
gi|55376149|ref|YP_134005.1|	107	HTH_5	Bacterial	12.0	0.0	9.6e-05	0.14	17	46	40	69	26	70	0.80
gi|55376149|ref|YP_134005.1|	107	NfeD	NfeD-like	11.9	0.0	0.00015	0.23	35	63	53	81	29	91	0.82
gi|55376150|ref|YP_134006.1|	94	PadR	Transcriptional	56.7	1.2	6.5e-19	1.7e-15	1	74	11	79	11	80	0.91
gi|55376150|ref|YP_134006.1|	94	HTH_27	Winged	18.9	0.0	6.2e-07	0.0016	8	68	11	74	4	74	0.81
gi|55376150|ref|YP_134006.1|	94	HTH_45	Winged	16.0	0.0	3.5e-06	0.0089	30	68	37	80	21	88	0.78
gi|55376150|ref|YP_134006.1|	94	DUF1495	Winged	15.5	0.0	4.3e-06	0.011	53	85	44	76	40	80	0.87
gi|55376150|ref|YP_134006.1|	94	SMC_ScpB	Segregation	14.3	0.0	8.8e-06	0.023	110	144	42	73	20	82	0.81
gi|55376150|ref|YP_134006.1|	94	Penicillinase_R	Penicillinase	12.7	0.1	4.9e-05	0.13	42	70	47	76	10	90	0.86
gi|55376150|ref|YP_134006.1|	94	Big_2	Bacterial	11.4	0.1	8.6e-05	0.22	50	76	52	79	47	82	0.87
gi|55376151|ref|YP_134007.1|	372	tRNA_anti-codon	OB-fold	15.1	0.1	9.5e-07	0.017	19	73	165	216	146	220	0.83
gi|55376151|ref|YP_134007.1|	372	tRNA_anti-codon	OB-fold	-0.5	0.1	0.072	1.3e+03	25	47	285	307	276	311	0.78
gi|55376152|ref|YP_134008.1|	244	DUF3770	Protein	11.9	0.0	2e-05	0.12	150	220	116	183	99	193	0.82
gi|55376152|ref|YP_134008.1|	244	HD_5	HD	11.8	0.0	3.7e-05	0.22	15	44	142	171	132	176	0.93
gi|55376152|ref|YP_134008.1|	244	PqqD	Coenzyme	11.0	0.5	6.9e-05	0.41	17	62	143	189	131	191	0.84
gi|55376155|ref|YP_134011.1|	175	HTH_20	Helix-turn-helix	21.5	0.0	1.1e-07	0.00018	24	61	37	74	34	74	0.92
gi|55376155|ref|YP_134011.1|	175	HTH_20	Helix-turn-helix	-2.2	0.0	2.8	4.6e+03	22	33	94	105	89	113	0.58
gi|55376155|ref|YP_134011.1|	175	LexA_DNA_bind	LexA	0.3	0.0	0.36	5.9e+02	34	45	31	42	29	44	0.88
gi|55376155|ref|YP_134011.1|	175	LexA_DNA_bind	LexA	14.8	0.0	1.1e-05	0.017	29	59	41	70	36	75	0.78
gi|55376155|ref|YP_134011.1|	175	LexA_DNA_bind	LexA	-2.1	0.0	2	3.3e+03	52	60	81	89	80	92	0.79
gi|55376155|ref|YP_134011.1|	175	MarR	MarR	11.7	0.0	0.00011	0.18	18	51	38	71	34	74	0.88
gi|55376155|ref|YP_134011.1|	175	MarR	MarR	2.5	0.0	0.084	1.4e+02	34	51	90	107	83	114	0.82
gi|55376155|ref|YP_134011.1|	175	MarR	MarR	-3.6	0.0	6.9	1.1e+04	18	27	156	165	154	166	0.75
gi|55376155|ref|YP_134011.1|	175	HTH_24	Winged	13.8	0.0	2e-05	0.033	20	47	40	67	36	68	0.93
gi|55376155|ref|YP_134011.1|	175	HTH_24	Winged	-1.2	0.0	0.93	1.5e+03	35	43	103	111	96	112	0.57
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	12.8	0.0	5.3e-05	0.086	14	54	36	84	35	85	0.83
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	-1.8	0.0	1.9	3.1e+03	21	27	93	99	90	114	0.54
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	-3.4	0.0	5.9	9.7e+03	30	37	150	157	150	158	0.80
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	-1.4	0.0	1.4	2.3e+03	1	18	157	175	157	175	0.69
gi|55376155|ref|YP_134011.1|	175	SLH	S-layer	12.7	0.0	6.1e-05	0.1	3	31	44	73	42	75	0.90
gi|55376155|ref|YP_134011.1|	175	Rrf2	Transcriptional	12.7	0.0	7.4e-05	0.12	25	57	37	69	21	73	0.90
gi|55376155|ref|YP_134011.1|	175	Rrf2	Transcriptional	-2.9	0.1	5.5	8.9e+03	71	81	94	104	91	106	0.64
gi|55376155|ref|YP_134011.1|	175	Dimerisation2	Dimerisation	12.8	0.0	5.2e-05	0.086	22	75	26	79	25	84	0.89
gi|55376155|ref|YP_134011.1|	175	HTH_5	Bacterial	10.8	0.0	0.00021	0.35	18	46	40	68	34	69	0.90
gi|55376155|ref|YP_134011.1|	175	HTH_5	Bacterial	-1.7	0.0	1.7	2.8e+03	14	23	95	104	92	107	0.79
gi|55376155|ref|YP_134011.1|	175	DUF1786	Putative	11.3	0.1	9.5e-05	0.15	78	111	124	156	49	168	0.82
gi|55376155|ref|YP_134011.1|	175	Phage_rep_O	Bacteriophage	11.6	0.0	0.00019	0.31	53	95	41	87	35	87	0.90
gi|55376156|ref|YP_134012.1|	130	Late_protein_L2	Late	10.4	1.3	1.3e-05	0.24	388	450	28	89	21	103	0.82
gi|55376157|ref|YP_134013.1|	255	AAA_31	AAA	123.7	0.0	3.3e-39	7.4e-36	2	176	3	179	2	180	0.90
gi|55376157|ref|YP_134013.1|	255	CbiA	CobQ/CobB/MinD/ParA	61.6	0.0	3.4e-20	7.6e-17	2	127	6	231	5	232	0.91
gi|55376157|ref|YP_134013.1|	255	ParA	NUBPL	28.9	0.4	3.3e-10	7.4e-07	4	188	3	202	1	211	0.72
gi|55376157|ref|YP_134013.1|	255	MipZ	ATPase	21.1	0.6	6.9e-08	0.00016	2	46	4	48	3	168	0.82
gi|55376157|ref|YP_134013.1|	255	CBP_BcsQ	Cellulose	21.2	0.0	7.2e-08	0.00016	5	157	6	162	2	178	0.77
gi|55376157|ref|YP_134013.1|	255	ArsA_ATPase	Anion-transporting	15.7	0.1	2.9e-06	0.0065	8	134	10	130	3	133	0.67
gi|55376157|ref|YP_134013.1|	255	Fer4_NifH	4Fe-4S	12.8	0.0	2.6e-05	0.058	8	41	11	44	4	55	0.89
gi|55376157|ref|YP_134013.1|	255	Usp	Universal	12.1	0.0	9.4e-05	0.21	4	53	145	198	143	201	0.90
gi|55376158|ref|YP_134014.1|	204	Pilin_N	Archaeal	88.3	3.5	2.7e-29	4.9e-25	1	79	45	123	45	125	0.94
gi|55376158|ref|YP_134014.1|	204	Pilin_N	Archaeal	-1.7	0.0	0.33	5.8e+03	58	58	163	163	130	193	0.53
gi|55376159|ref|YP_134015.1|	193	ParBc	ParB-like	21.8	0.2	9.3e-09	0.00017	42	84	116	154	73	160	0.86
gi|55376161|ref|YP_134017.1|	314	Bactofilin	Polymer-forming	-2.2	0.1	1.5	5.2e+03	47	70	30	52	25	76	0.68
gi|55376161|ref|YP_134017.1|	314	Bactofilin	Polymer-forming	16.5	7.0	2.2e-06	0.008	25	80	193	251	161	252	0.63
gi|55376161|ref|YP_134017.1|	314	Bactofilin	Polymer-forming	27.0	6.9	1.1e-09	4.1e-06	22	83	244	308	237	313	0.85
gi|55376161|ref|YP_134017.1|	314	DUF3494	Protein	13.7	0.6	9.9e-06	0.036	160	205	217	261	202	262	0.91
gi|55376161|ref|YP_134017.1|	314	DUF3494	Protein	12.7	0.2	2e-05	0.073	161	206	254	298	251	302	0.91
gi|55376161|ref|YP_134017.1|	314	FixG_C	IG-like	12.1	0.8	4.9e-05	0.18	38	103	80	142	78	159	0.72
gi|55376161|ref|YP_134017.1|	314	FixG_C	IG-like	-1.2	0.0	0.63	2.3e+03	72	72	258	258	208	306	0.58
gi|55376161|ref|YP_134017.1|	314	P2_Phage_GpR	P2	1.4	0.1	0.085	3.1e+02	95	115	80	100	77	113	0.85
gi|55376161|ref|YP_134017.1|	314	P2_Phage_GpR	P2	8.1	0.0	0.00074	2.7	80	124	124	168	116	175	0.88
gi|55376161|ref|YP_134017.1|	314	AbrB-like	AbrB-like	-3.5	0.0	3.2	1.2e+04	25	35	115	125	101	126	0.71
gi|55376161|ref|YP_134017.1|	314	AbrB-like	AbrB-like	6.3	0.7	0.0029	11	7	45	205	243	198	245	0.80
gi|55376161|ref|YP_134017.1|	314	AbrB-like	AbrB-like	4.6	0.5	0.0094	34	20	45	236	261	225	263	0.82
gi|55376161|ref|YP_134017.1|	314	AbrB-like	AbrB-like	4.8	0.9	0.0083	30	20	45	254	279	244	302	0.73
gi|55376162|ref|YP_134018.1|	372	CopD	Copper	-2.9	0.1	1.6	9.4e+03	16	27	9	20	2	30	0.48
gi|55376162|ref|YP_134018.1|	372	CopD	Copper	17.5	1.1	6.8e-07	0.0041	32	103	260	327	254	333	0.80
gi|55376162|ref|YP_134018.1|	372	CopD	Copper	-1.8	0.0	0.7	4.2e+03	50	69	347	366	343	368	0.76
gi|55376162|ref|YP_134018.1|	372	DUF1102	Protein	14.3	0.0	5.9e-06	0.036	45	133	70	155	53	161	0.83
gi|55376162|ref|YP_134018.1|	372	DUF3040	Protein	2.9	0.5	0.022	1.3e+02	52	73	5	26	2	29	0.70
gi|55376162|ref|YP_134018.1|	372	DUF3040	Protein	-0.4	0.2	0.24	1.4e+03	47	64	268	285	265	297	0.70
gi|55376162|ref|YP_134018.1|	372	DUF3040	Protein	10.0	1.8	0.00014	0.81	32	73	299	341	291	359	0.72
gi|55376163|ref|YP_134019.1|	200	DUF1372	Protein	11.5	0.1	1.4e-05	0.25	42	96	108	162	83	167	0.84
gi|55376165|ref|YP_134021.1|	950	FaeA	FaeA-like	16.2	0.0	2.3e-06	0.01	11	60	770	822	762	823	0.88
gi|55376165|ref|YP_134021.1|	950	HTH_DeoR	DeoR-like	12.1	0.0	2.8e-05	0.12	12	46	772	809	763	811	0.81
gi|55376165|ref|YP_134021.1|	950	HTH_11	HTH	12.3	0.0	2.7e-05	0.12	6	42	765	804	761	808	0.79
gi|55376165|ref|YP_134021.1|	950	HTH_20	Helix-turn-helix	-2.4	0.0	1.2	5.4e+03	38	60	269	291	257	292	0.75
gi|55376165|ref|YP_134021.1|	950	HTH_20	Helix-turn-helix	8.3	0.0	0.00055	2.5	19	44	769	794	743	814	0.83
gi|55376165|ref|YP_134021.1|	950	HTH_20	Helix-turn-helix	-0.1	0.0	0.23	1e+03	9	30	894	915	889	923	0.87
gi|55376168|ref|YP_134024.1|	206	zf_Rg	Reverse	2.5	1.8	0.0053	95	8	19	17	30	15	43	0.74
gi|55376168|ref|YP_134024.1|	206	zf_Rg	Reverse	11.3	0.1	9.7e-06	0.17	19	31	175	187	171	194	0.90
gi|55376171|ref|YP_134027.1|	120	YpzI	YpzI-like	-2.7	0.1	0.29	5.2e+03	8	15	9	16	8	16	0.80
gi|55376171|ref|YP_134027.1|	120	YpzI	YpzI-like	12.3	0.2	6.2e-06	0.11	3	37	41	77	40	82	0.84
gi|55376172|ref|YP_134028.1|	129	Radical_SAM	Radical	12.7	0.0	7e-06	0.13	10	43	7	44	4	49	0.89
gi|55376174|ref|YP_134030.1|	185	zf-C2H2	Zinc	15.7	0.2	2.5e-06	0.015	1	22	13	34	13	34	0.95
gi|55376174|ref|YP_134030.1|	185	zf-C2H2_4	C2H2-type	13.7	0.2	1.5e-05	0.089	1	22	13	34	13	35	0.95
gi|55376174|ref|YP_134030.1|	185	zf-C2H2_2	C2H2	11.8	0.1	3.9e-05	0.23	49	74	11	36	6	50	0.89
gi|55376175|ref|YP_134031.1|	161	YdjM	LexA-binding,	46.9	11.4	1e-16	1.8e-12	5	142	5	135	1	159	0.70
gi|55376176|ref|YP_134032.1|	812	DEAD	DEAD/DEAH	83.1	0.0	5.3e-27	1.9e-23	2	173	59	236	58	239	0.85
gi|55376176|ref|YP_134032.1|	812	DUF1998	Domain	-1.1	0.0	0.95	3.4e+03	18	45	555	582	547	585	0.67
gi|55376176|ref|YP_134032.1|	812	DUF1998	Domain	66.3	0.4	8.7e-22	3.1e-18	1	83	707	786	707	786	0.95
gi|55376176|ref|YP_134032.1|	812	Helicase_C	Helicase	40.6	0.0	7.6e-14	2.7e-10	11	110	326	434	316	435	0.84
gi|55376176|ref|YP_134032.1|	812	ResIII	Type	20.1	0.0	1.4e-07	0.0005	4	146	57	199	54	233	0.69
gi|55376176|ref|YP_134032.1|	812	YtkA	YtkA-like	9.8	0.0	0.00033	1.2	6	52	57	102	55	114	0.90
gi|55376176|ref|YP_134032.1|	812	YtkA	YtkA-like	0.0	0.3	0.37	1.3e+03	8	51	249	294	246	310	0.62
gi|55376178|ref|YP_134034.1|	326	PAPS_reduct	Phosphoadenosine	56.0	0.0	8.3e-19	5e-15	3	157	85	247	83	255	0.80
gi|55376178|ref|YP_134034.1|	326	Diphthami_syn_2	Diphthamide	12.7	0.0	1.1e-05	0.067	4	25	85	106	83	157	0.90
gi|55376178|ref|YP_134034.1|	326	ATP_bind_3	PP-loop	12.0	0.0	2.2e-05	0.13	6	161	88	243	84	247	0.59
gi|55376180|ref|YP_134036.1|	324	Big_3_5	Bacterial	16.7	0.6	3.4e-07	0.0061	11	76	61	124	57	132	0.81
gi|55376180|ref|YP_134036.1|	324	Big_3_5	Bacterial	-3.3	0.0	0.59	1.1e+04	66	81	232	247	229	252	0.64
gi|55376180|ref|YP_134036.1|	324	Big_3_5	Bacterial	-0.3	0.2	0.067	1.2e+03	8	37	274	305	269	321	0.60
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	36.4	0.3	2.8e-12	3.1e-09	2	37	29	64	28	66	0.95
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	-0.2	0.6	0.94	1.1e+03	8	21	80	93	79	94	0.89
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	0.2	0.3	0.74	8.3e+02	8	20	176	188	175	189	0.86
gi|55376181|ref|YP_134037.1|	234	Prominin	Prominin	20.7	3.4	7.5e-08	8.4e-05	630	729	35	135	17	140	0.82
gi|55376181|ref|YP_134037.1|	234	Prominin	Prominin	0.8	0.1	0.08	90	617	661	166	221	144	232	0.74
gi|55376181|ref|YP_134037.1|	234	Cep57_CLD_2	Centrosome	15.6	5.5	1.1e-05	0.013	16	60	76	120	66	126	0.85
gi|55376181|ref|YP_134037.1|	234	Cep57_CLD_2	Centrosome	9.8	3.7	0.00072	0.81	42	64	128	150	119	158	0.78
gi|55376181|ref|YP_134037.1|	234	Cep57_CLD_2	Centrosome	-0.8	0.6	1.5	1.7e+03	49	64	202	218	194	221	0.61
gi|55376181|ref|YP_134037.1|	234	WXG100	Proteins	11.2	1.6	0.00029	0.33	6	71	79	144	74	148	0.92
gi|55376181|ref|YP_134037.1|	234	WXG100	Proteins	2.9	0.1	0.11	1.3e+02	23	47	171	196	154	216	0.80
gi|55376181|ref|YP_134037.1|	234	ATG16	Autophagy	5.0	17.1	0.022	25	77	184	32	143	17	145	0.81
gi|55376181|ref|YP_134037.1|	234	ATG16	Autophagy	10.9	9.7	0.00036	0.41	81	161	131	208	127	218	0.88
gi|55376181|ref|YP_134037.1|	234	CSTF_C	Transcription	4.8	0.1	0.019	21	28	36	130	138	119	140	0.86
gi|55376181|ref|YP_134037.1|	234	CSTF_C	Transcription	5.3	0.3	0.013	15	26	39	195	208	194	210	0.91
gi|55376181|ref|YP_134037.1|	234	HicB_lk_antitox	HicB_like	6.5	0.0	0.0079	8.8	92	121	29	58	18	60	0.87
gi|55376181|ref|YP_134037.1|	234	HicB_lk_antitox	HicB_like	4.2	0.5	0.04	45	28	81	116	169	109	185	0.86
gi|55376181|ref|YP_134037.1|	234	STAT_alpha	STAT	13.3	9.7	5.1e-05	0.057	12	93	76	169	65	176	0.86
gi|55376181|ref|YP_134037.1|	234	STAT_alpha	STAT	0.3	0.2	0.49	5.5e+02	116	149	173	207	168	227	0.52
gi|55376181|ref|YP_134037.1|	234	EMP24_GP25L	emp24/gp25L/p24	14.4	4.1	2.5e-05	0.028	104	153	70	119	26	124	0.82
gi|55376181|ref|YP_134037.1|	234	EMP24_GP25L	emp24/gp25L/p24	1.0	0.7	0.31	3.5e+02	98	122	160	184	131	218	0.75
gi|55376181|ref|YP_134037.1|	234	BAF1_ABF1	BAF1	9.5	11.7	0.0004	0.45	366	513	44	199	9	220	0.65
gi|55376181|ref|YP_134037.1|	234	FlgN	FlgN	10.6	7.0	0.00053	0.6	45	111	77	144	57	146	0.91
gi|55376181|ref|YP_134037.1|	234	FlgN	FlgN	5.8	4.3	0.016	18	45	96	146	207	144	233	0.74
gi|55376181|ref|YP_134037.1|	234	zf-C4H2	Zinc	11.4	15.4	0.00026	0.29	18	113	64	157	50	174	0.77
gi|55376181|ref|YP_134037.1|	234	zf-C4H2	Zinc	2.4	1.9	0.15	1.6e+02	59	96	173	207	164	227	0.59
gi|55376181|ref|YP_134037.1|	234	Hid1	High-temperature-induced	7.1	8.4	0.0011	1.3	552	704	9	195	5	203	0.59
gi|55376181|ref|YP_134037.1|	234	Semialdhyde_dhC	Semialdehyde	2.1	0.5	0.15	1.7e+02	46	91	47	92	18	108	0.60
gi|55376181|ref|YP_134037.1|	234	Semialdhyde_dhC	Semialdehyde	9.6	1.1	0.00082	0.91	11	91	114	194	110	201	0.86
gi|55376181|ref|YP_134037.1|	234	PLAC9	Placenta-specific	7.3	0.2	0.0054	6.1	23	47	103	127	95	139	0.80
gi|55376181|ref|YP_134037.1|	234	PLAC9	Placenta-specific	1.7	0.6	0.3	3.3e+02	20	39	168	187	150	211	0.74
gi|55376181|ref|YP_134037.1|	234	Activator-TraM	Transcriptional	8.7	6.8	0.0013	1.5	35	118	64	144	47	156	0.78
gi|55376181|ref|YP_134037.1|	234	Activator-TraM	Transcriptional	0.8	0.5	0.35	3.9e+02	57	96	151	190	141	224	0.65
gi|55376182|ref|YP_134038.1|	47	C1_1	Phorbol	16.2	0.4	2.4e-06	0.007	8	36	5	39	1	42	0.82
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_4	zinc-ribbon	12.7	1.9	3.1e-05	0.093	1	35	7	41	7	42	0.80
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_4	zinc-ribbon	4.6	0.5	0.01	31	4	13	33	42	31	46	0.61
gi|55376182|ref|YP_134038.1|	47	Mu-like_Com	Mu-like	3.6	0.0	0.015	44	23	35	7	19	2	24	0.76
gi|55376182|ref|YP_134038.1|	47	Mu-like_Com	Mu-like	8.5	0.2	0.00043	1.3	3	13	30	40	28	43	0.83
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_5	zinc-ribbon	4.9	0.1	0.0075	23	26	32	9	15	3	16	0.82
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_5	zinc-ribbon	7.1	0.3	0.0015	4.4	27	37	33	43	26	43	0.86
gi|55376182|ref|YP_134038.1|	47	RNA_POL_M_15KD	RNA	12.1	0.2	4.5e-05	0.14	17	34	4	21	1	23	0.79
gi|55376182|ref|YP_134038.1|	47	RNA_POL_M_15KD	RNA	1.6	0.3	0.085	2.5e+02	18	27	27	37	22	39	0.70
gi|55376182|ref|YP_134038.1|	47	Rubredoxin_2	Rubredoxin	6.2	0.8	0.0029	8.5	2	9	10	17	10	19	0.84
gi|55376182|ref|YP_134038.1|	47	Rubredoxin_2	Rubredoxin	7.8	0.5	0.00093	2.8	16	23	33	40	33	43	0.86
gi|55376184|ref|YP_134040.1|	104	DUF505	Protein	24.0	0.0	1.3e-08	1.1e-05	363	407	54	98	40	103	0.84
gi|55376184|ref|YP_134040.1|	104	PadR	Transcriptional	21.0	0.0	2.9e-07	0.00025	25	73	49	92	27	94	0.79
gi|55376184|ref|YP_134040.1|	104	DUF4364	Domain	20.3	0.0	4.4e-07	0.00037	36	78	57	100	42	104	0.90
gi|55376184|ref|YP_134040.1|	104	MarR_2	MarR	19.2	0.1	1e-06	0.00086	3	61	19	79	17	80	0.87
gi|55376184|ref|YP_134040.1|	104	HTH_27	Winged	19.8	0.1	9.7e-07	0.00083	28	68	50	88	21	88	0.90
gi|55376184|ref|YP_134040.1|	104	HTH_20	Helix-turn-helix	18.1	0.0	2.5e-06	0.0021	25	59	41	75	39	77	0.88
gi|55376184|ref|YP_134040.1|	104	Rrf2	Transcriptional	16.3	0.0	1.1e-05	0.0093	10	58	23	73	16	76	0.77
gi|55376184|ref|YP_134040.1|	104	HTH_45	Winged	14.6	0.0	2.8e-05	0.024	35	71	56	97	48	100	0.87
gi|55376184|ref|YP_134040.1|	104	Mrr_N	Mrr	14.0	0.0	4.7e-05	0.04	54	86	57	93	42	94	0.85
gi|55376184|ref|YP_134040.1|	104	GntR	Bacterial	13.2	0.0	6.3e-05	0.053	33	56	49	72	44	75	0.90
gi|55376184|ref|YP_134040.1|	104	Replic_Relax	Replication-relaxation	13.8	0.0	5.2e-05	0.045	23	74	54	97	41	104	0.78
gi|55376184|ref|YP_134040.1|	104	HTH_11	HTH	13.4	0.0	6.4e-05	0.055	23	48	48	72	43	75	0.87
gi|55376184|ref|YP_134040.1|	104	HTH_DeoR	DeoR-like	13.1	0.0	7e-05	0.06	18	44	44	70	39	73	0.88
gi|55376184|ref|YP_134040.1|	104	PaaX	PaaX-like	13.6	0.0	6.8e-05	0.058	31	70	48	88	28	88	0.86
gi|55376184|ref|YP_134040.1|	104	HTH_12	Ribonuclease	12.9	0.0	9.2e-05	0.078	25	56	47	78	39	92	0.74
gi|55376184|ref|YP_134040.1|	104	Ribosomal_S19e	Ribosomal	12.3	0.0	0.00012	0.099	90	128	51	93	33	100	0.80
gi|55376184|ref|YP_134040.1|	104	HTH_36	Helix-turn-helix	11.4	0.0	0.00028	0.24	2	55	18	70	17	70	0.84
gi|55376184|ref|YP_134040.1|	104	TrmB	Sugar-specific	12.0	0.0	0.00017	0.15	29	62	47	82	39	86	0.78
gi|55376184|ref|YP_134040.1|	104	RQC	RQC	12.0	0.0	0.00016	0.14	58	100	51	95	31	100	0.92
gi|55376184|ref|YP_134040.1|	104	HTH_5	Bacterial	11.8	0.0	0.0002	0.17	24	47	49	72	47	72	0.90
gi|55376184|ref|YP_134040.1|	104	DUF4423	Domain	11.5	0.0	0.00022	0.18	49	91	51	93	22	102	0.82
gi|55376186|ref|YP_134042.1|	515	zf-CCHC_3	Zinc	11.4	0.0	2.7e-05	0.24	12	22	276	286	275	298	0.77
gi|55376186|ref|YP_134042.1|	515	AAA_33	AAA	5.6	0.0	0.0019	17	4	22	93	110	90	147	0.64
gi|55376186|ref|YP_134042.1|	515	AAA_33	AAA	4.1	0.0	0.0054	48	24	72	242	301	231	304	0.71