#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|55376146|ref|YP_134002.1|	138	TRAM	TRAM	1.9	0.0	0.026	1.9e+02	2	14	36	48	35	55	0.82
gi|55376146|ref|YP_134002.1|	138	TRAM	TRAM	47.1	2.6	1.9e-16	1.4e-12	2	61	74	131	73	131	0.95
gi|55376146|ref|YP_134002.1|	138	DUF3553	Protein	12.2	0.2	1.1e-05	0.079	23	45	109	131	102	135	0.88
gi|55376147|ref|YP_134003.1|	198	Phage_integrase	Phage	39.2	0.0	7.1e-14	5.3e-10	2	168	14	182	13	187	0.81
gi|55376147|ref|YP_134003.1|	198	Integrase_1	Integrase	38.1	0.0	1.7e-13	1.3e-09	5	154	6	158	2	167	0.80
gi|55376148|ref|YP_134004.1|	112	PemK	PemK-like	18.0	0.0	1.6e-07	0.0023	15	105	20	103	9	108	0.74
gi|55376149|ref|YP_134005.1|	107	MarR_2	MarR	31.2	0.0	9.4e-11	1.3e-07	8	54	25	71	17	82	0.94
gi|55376149|ref|YP_134005.1|	107	HTH_IclR	IclR	23.6	0.0	2.1e-08	2.8e-05	7	51	26	71	25	72	0.92
gi|55376149|ref|YP_134005.1|	107	HTH_IclR	IclR	-2.9	0.2	3.9	5.3e+03	25	35	88	98	84	99	0.76
gi|55376149|ref|YP_134005.1|	107	HTH_24	Winged	22.7	0.0	3.4e-08	4.6e-05	7	48	26	69	25	69	0.89
gi|55376149|ref|YP_134005.1|	107	TrmB	Sugar-specific	23.2	0.0	2.9e-08	3.9e-05	22	55	38	71	28	76	0.91
gi|55376149|ref|YP_134005.1|	107	Rrf2	Transcriptional	20.2	0.0	3.5e-07	0.00047	11	57	25	70	18	74	0.91
gi|55376149|ref|YP_134005.1|	107	Sulfolobus_pRN	Sulfolobus	17.5	0.0	2.2e-06	0.0029	9	50	26	70	22	77	0.79
gi|55376149|ref|YP_134005.1|	107	HTH_Crp_2	Crp-like	17.2	0.0	2.3e-06	0.003	29	75	39	85	33	86	0.90
gi|55376149|ref|YP_134005.1|	107	MarR	MarR	15.7	0.0	6.3e-06	0.0086	9	48	28	69	23	71	0.81
gi|55376149|ref|YP_134005.1|	107	HTH_20	Helix-turn-helix	15.7	0.0	6.7e-06	0.009	14	58	26	72	25	75	0.94
gi|55376149|ref|YP_134005.1|	107	HTH_27	Winged	15.8	0.0	9.3e-06	0.013	6	55	26	69	21	77	0.76
gi|55376149|ref|YP_134005.1|	107	TFIIE_alpha	TFIIE	10.9	0.0	0.00018	0.24	14	60	23	71	16	106	0.87
gi|55376150|ref|YP_134006.1|	94	PadR	Transcriptional	54.4	0.8	3.7e-18	7.8e-15	1	74	11	79	11	80	0.90
gi|55376150|ref|YP_134006.1|	94	HTH_27	Winged	21.9	0.0	7.2e-08	0.00015	2	68	5	74	4	74	0.83
gi|55376150|ref|YP_134006.1|	94	HTH_45	Winged	18.0	0.0	8.4e-07	0.0018	29	73	36	85	23	88	0.81
gi|55376150|ref|YP_134006.1|	94	DUF1495	Winged	15.3	0.0	5.2e-06	0.011	50	85	41	76	39	80	0.88
gi|55376150|ref|YP_134006.1|	94	DUF387	Putative	15.3	0.0	4.5e-06	0.0095	104	143	37	73	22	82	0.79
gi|55376150|ref|YP_134006.1|	94	Penicillinase_R	Penicillinase	12.4	0.0	5.6e-05	0.12	42	70	47	76	8	91	0.86
gi|55376150|ref|YP_134006.1|	94	MarR_2	MarR	0.7	0.0	0.2	4.2e+02	1	18	2	19	2	38	0.77
gi|55376150|ref|YP_134006.1|	94	MarR_2	MarR	8.6	0.0	0.00067	1.4	42	61	47	64	46	65	0.84
gi|55376150|ref|YP_134006.1|	94	MarR_2	MarR	-2.0	0.0	1.3	2.9e+03	26	39	77	90	75	92	0.80
gi|55376151|ref|YP_134007.1|	372	tRNA_anti-codon	OB-fold	17.3	0.1	4.1e-07	0.003	5	71	150	215	131	220	0.85
gi|55376151|ref|YP_134007.1|	372	tRNA_anti-codon	OB-fold	-0.8	0.0	0.18	1.4e+03	24	46	285	307	277	311	0.77
gi|55376151|ref|YP_134007.1|	372	MTHFR_C	Methylene-tetrahydrofolate	11.2	0.0	2.6e-05	0.2	37	63	251	277	246	307	0.87
gi|55376153|ref|YP_134009.1|	82	Decorin_bind	Decorin	12.0	0.0	1e-05	0.15	79	124	8	51	1	56	0.80
gi|55376155|ref|YP_134011.1|	175	HTH_20	Helix-turn-helix	21.2	0.0	1.5e-07	0.00018	24	60	37	73	35	74	0.92
gi|55376155|ref|YP_134011.1|	175	HTH_20	Helix-turn-helix	-0.9	0.0	1.2	1.5e+03	28	49	91	110	88	114	0.58
gi|55376155|ref|YP_134011.1|	175	HTH_24	Winged	17.2	0.0	2e-06	0.0024	20	47	40	67	36	68	0.94
gi|55376155|ref|YP_134011.1|	175	HTH_24	Winged	-1.0	0.0	0.94	1.2e+03	31	43	99	111	94	112	0.56
gi|55376155|ref|YP_134011.1|	175	LexA_DNA_bind	LexA	0.3	0.0	0.39	4.9e+02	34	45	31	42	29	44	0.88
gi|55376155|ref|YP_134011.1|	175	LexA_DNA_bind	LexA	14.8	0.0	1.2e-05	0.014	29	59	41	70	36	75	0.78
gi|55376155|ref|YP_134011.1|	175	LexA_DNA_bind	LexA	-2.1	0.0	2.2	2.7e+03	52	60	81	89	80	92	0.79
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	13.7	0.0	2.9e-05	0.036	14	54	36	84	34	85	0.81
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	-2.0	0.0	2.2	2.7e+03	20	27	92	99	90	113	0.57
gi|55376155|ref|YP_134011.1|	175	HTH_11	HTH	-1.1	0.0	1.2	1.4e+03	1	18	157	175	157	175	0.73
gi|55376155|ref|YP_134011.1|	175	MarR	MarR	11.4	0.0	0.00016	0.19	19	51	39	71	33	73	0.88
gi|55376155|ref|YP_134011.1|	175	MarR	MarR	2.1	0.0	0.13	1.6e+02	34	51	90	107	84	114	0.83
gi|55376155|ref|YP_134011.1|	175	MarR_2	MarR	11.2	0.0	0.00017	0.21	22	52	38	68	31	82	0.87
gi|55376155|ref|YP_134011.1|	175	MarR_2	MarR	1.6	0.0	0.17	2.2e+02	33	58	85	110	80	114	0.69
gi|55376155|ref|YP_134011.1|	175	MarR_2	MarR	-2.7	0.0	3.9	4.9e+03	21	31	155	165	143	166	0.76
gi|55376155|ref|YP_134011.1|	175	HTH_27	Winged	13.8	0.0	4.2e-05	0.052	12	62	30	78	27	79	0.84
gi|55376155|ref|YP_134011.1|	175	HTH_27	Winged	-2.5	0.0	5.1	6.3e+03	37	53	92	108	88	116	0.52
gi|55376155|ref|YP_134011.1|	175	TrmB	Sugar-specific	13.4	0.0	3.8e-05	0.047	22	63	37	79	25	82	0.89
gi|55376155|ref|YP_134011.1|	175	Rrf2	Transcriptional	12.5	0.0	9.1e-05	0.11	25	57	37	69	23	73	0.90
gi|55376155|ref|YP_134011.1|	175	Rrf2	Transcriptional	-2.6	0.0	4.8	5.9e+03	71	81	94	104	90	106	0.63
gi|55376155|ref|YP_134011.1|	175	SLH	S-layer	-2.4	0.0	3.3	4e+03	19	28	29	38	28	39	0.79
gi|55376155|ref|YP_134011.1|	175	SLH	S-layer	11.6	0.0	0.00014	0.18	3	31	44	73	42	82	0.91
gi|55376155|ref|YP_134011.1|	175	HTH_5	Bacterial	10.4	0.0	0.0003	0.37	18	46	40	68	34	69	0.90
gi|55376155|ref|YP_134011.1|	175	HTH_5	Bacterial	-1.4	0.0	1.5	1.9e+03	14	24	95	105	92	108	0.80
gi|55376155|ref|YP_134011.1|	175	CDC37_C	Cdc37	11.3	0.0	0.00018	0.23	45	71	47	73	44	119	0.79
gi|55376157|ref|YP_134013.1|	255	CbiA	CobQ/CobB/MinD/ParA	91.4	0.0	2.2e-29	4.7e-26	1	168	5	198	5	220	0.79
gi|55376157|ref|YP_134013.1|	255	AAA_31	AAA	34.7	0.0	6.9e-12	1.5e-08	1	155	3	157	3	159	0.89
gi|55376157|ref|YP_134013.1|	255	MipZ	ATPase	21.1	0.2	6.3e-08	0.00013	3	55	5	56	3	171	0.74
gi|55376157|ref|YP_134013.1|	255	YhjQ	YhjQ	17.6	0.0	9e-07	0.0019	4	158	5	161	2	177	0.79
gi|55376157|ref|YP_134013.1|	255	ArsA_ATPase	Anion-transporting	15.3	0.1	3.6e-06	0.0077	9	49	11	51	3	133	0.62
gi|55376157|ref|YP_134013.1|	255	Fer4_NifH	4Fe-4S	11.5	0.0	5.7e-05	0.12	7	40	10	43	3	55	0.89
gi|55376157|ref|YP_134013.1|	255	Usp	Universal	12.5	0.0	5.6e-05	0.12	3	53	144	198	142	248	0.88
gi|55376158|ref|YP_134014.1|	204	DUF1628	Protein	88.9	2.4	3.6e-29	2.7e-25	1	78	45	123	45	125	0.96
gi|55376158|ref|YP_134014.1|	204	DUF1628	Protein	-1.5	0.0	0.59	4.4e+03	56	63	162	169	131	193	0.51
gi|55376158|ref|YP_134014.1|	204	E1-E2_ATPase	E1-E2	-0.1	0.2	0.052	3.9e+02	159	173	56	70	45	90	0.56
gi|55376158|ref|YP_134014.1|	204	E1-E2_ATPase	E1-E2	10.1	0.1	3.8e-05	0.28	84	149	110	177	98	185	0.82
gi|55376159|ref|YP_134015.1|	193	ParBc	ParB-like	22.0	0.0	8.6e-09	0.00013	41	83	115	153	76	160	0.83
gi|55376161|ref|YP_134017.1|	314	Bactofilin	Polymer-forming	-3.6	0.0	3.7	1.1e+04	51	68	32	48	26	55	0.54
gi|55376161|ref|YP_134017.1|	314	Bactofilin	Polymer-forming	17.3	2.4	1.2e-06	0.0035	27	85	193	254	176	255	0.86
gi|55376161|ref|YP_134017.1|	314	Bactofilin	Polymer-forming	32.3	6.3	2.4e-11	7.2e-08	4	84	222	307	219	312	0.77
gi|55376161|ref|YP_134017.1|	314	DUF3494	Protein	-3.1	0.0	1.6	4.7e+03	61	80	33	52	30	64	0.62
gi|55376161|ref|YP_134017.1|	314	DUF3494	Protein	17.8	0.4	6.4e-07	0.0019	154	201	217	263	203	266	0.93
gi|55376161|ref|YP_134017.1|	314	DUF3494	Protein	16.7	0.1	1.4e-06	0.0043	153	200	252	298	251	302	0.93
gi|55376161|ref|YP_134017.1|	314	DUF1258	Protein	7.9	0.0	0.00047	1.4	48	117	38	109	27	115	0.77
gi|55376161|ref|YP_134017.1|	314	DUF1258	Protein	7.8	0.1	0.0005	1.5	13	82	189	257	184	302	0.86
gi|55376161|ref|YP_134017.1|	314	Toxin_50	Putative	6.0	1.9	0.0033	9.7	40	78	207	244	170	260	0.52
gi|55376161|ref|YP_134017.1|	314	Toxin_50	Putative	5.9	0.2	0.0037	11	37	69	240	272	237	275	0.93
gi|55376161|ref|YP_134017.1|	314	Toxin_50	Putative	6.7	0.2	0.0021	6.2	37	68	276	307	272	312	0.94
gi|55376161|ref|YP_134017.1|	314	DUF2572	Protein	5.6	0.4	0.0029	8.7	156	192	211	247	201	250	0.86
gi|55376161|ref|YP_134017.1|	314	DUF2572	Protein	7.9	1.2	0.00059	1.7	154	192	227	265	218	269	0.88
gi|55376161|ref|YP_134017.1|	314	DUF2572	Protein	8.4	0.9	0.00043	1.3	154	192	245	283	239	289	0.89
gi|55376161|ref|YP_134017.1|	314	DUF2572	Protein	2.8	0.2	0.021	62	154	185	281	312	276	313	0.81
gi|55376162|ref|YP_134018.1|	372	CopD	Copper	0.9	0.2	0.066	4.9e+02	10	32	3	25	1	43	0.73
gi|55376162|ref|YP_134018.1|	372	CopD	Copper	15.3	1.2	2.2e-06	0.016	32	103	260	327	253	333	0.73
gi|55376162|ref|YP_134018.1|	372	DUF3611	Protein	12.9	0.3	6.9e-06	0.051	53	127	264	335	255	368	0.80
gi|55376163|ref|YP_134019.1|	200	DUF1034	Fn3-like	-2.7	0.0	0.97	7.2e+03	16	23	39	46	28	77	0.54
gi|55376163|ref|YP_134019.1|	200	DUF1034	Fn3-like	16.4	0.6	1.2e-06	0.0089	3	83	91	177	89	189	0.82
gi|55376163|ref|YP_134019.1|	200	DUF1372	Protein	11.5	0.1	2.8e-05	0.21	42	96	108	162	83	167	0.84
gi|55376164|ref|YP_134020.1|	239	TAT_signal	TAT	9.0	2.1	0.0001	1.5	2	20	1	19	1	31	0.84
gi|55376165|ref|YP_134021.1|	950	FaeA	FaeA-like	16.2	0.0	1.8e-06	0.0087	11	60	770	822	762	823	0.88
gi|55376165|ref|YP_134021.1|	950	HTH_DeoR	DeoR-like	12.1	0.0	2.1e-05	0.1	12	46	772	809	763	811	0.81
gi|55376165|ref|YP_134021.1|	950	HTH_11	HTH	12.0	0.0	2.3e-05	0.12	6	43	765	805	761	808	0.79
gi|55376168|ref|YP_134024.1|	206	FRD2	Bacteriophage	1.7	0.0	0.048	3.6e+02	19	67	57	101	38	109	0.67
gi|55376168|ref|YP_134024.1|	206	FRD2	Bacteriophage	8.8	0.0	0.00031	2.3	27	77	131	182	114	191	0.68
gi|55376168|ref|YP_134024.1|	206	zf-CHY	CHY	6.6	1.3	0.0011	8.4	23	64	17	61	7	66	0.75
gi|55376168|ref|YP_134024.1|	206	zf-CHY	CHY	4.1	0.0	0.007	52	21	29	183	191	171	202	0.85
gi|55376171|ref|YP_134027.1|	120	YpzI	YpzI-like	12.6	0.1	4.6e-06	0.068	3	36	41	76	40	82	0.82
gi|55376172|ref|YP_134028.1|	129	Radical_SAM	Radical	13.5	0.0	4e-06	0.059	10	43	7	45	4	49	0.90
gi|55376172|ref|YP_134028.1|	129	Radical_SAM	Radical	-2.3	0.0	0.28	4.1e+03	91	114	74	96	61	118	0.60
gi|55376174|ref|YP_134030.1|	185	zf-C2H2	Zinc	15.6	0.2	3e-06	0.015	1	22	13	34	13	34	0.95
gi|55376174|ref|YP_134030.1|	185	zf-C2H2_4	C2H2-type	13.8	0.1	1.1e-05	0.052	1	22	13	34	13	36	0.94
gi|55376174|ref|YP_134030.1|	185	zf-C2H2_2	C2H2	11.5	0.1	4.8e-05	0.24	49	74	11	36	6	48	0.89
gi|55376175|ref|YP_134031.1|	161	DUF457	Predicted	66.3	7.2	1.2e-22	1.8e-18	4	148	6	149	3	159	0.79
gi|55376176|ref|YP_134032.1|	812	DEAD	DEAD/DEAH	82.2	0.0	7.7e-27	2.9e-23	2	166	59	236	58	239	0.82
gi|55376176|ref|YP_134032.1|	812	DUF1998	Domain	-2.9	0.0	2.8	1.1e+04	20	43	556	580	550	582	0.67
gi|55376176|ref|YP_134032.1|	812	DUF1998	Domain	64.6	0.4	2.4e-21	9e-18	1	84	706	786	706	786	0.97
gi|55376176|ref|YP_134032.1|	812	Helicase_C	Helicase	38.1	0.0	2.7e-13	9.9e-10	9	77	366	434	361	435	0.96
gi|55376176|ref|YP_134032.1|	812	ResIII	Type	22.2	0.0	2.7e-08	0.0001	4	158	57	197	54	231	0.74
gi|55376178|ref|YP_134034.1|	326	PAPS_reduct	Phosphoadenosine	56.0	0.0	1.1e-18	4.1e-15	3	157	85	247	83	255	0.80
gi|55376178|ref|YP_134034.1|	326	ATP_bind_4	ATP-binding	13.8	0.0	7.2e-06	0.027	4	27	85	108	82	158	0.70
gi|55376178|ref|YP_134034.1|	326	ATP_bind_3	PP-loop	11.9	0.0	3e-05	0.11	6	108	88	191	84	247	0.57
gi|55376178|ref|YP_134034.1|	326	Ish1	Putative	11.4	0.1	7e-05	0.26	4	22	229	247	228	254	0.92
gi|55376180|ref|YP_134036.1|	324	DUF2141	Uncharacterized	12.2	0.0	7e-06	0.1	20	62	74	116	62	124	0.84
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	33.4	0.1	2.6e-11	2.5e-08	2	37	29	64	28	66	0.93
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	-1.9	0.7	3.6	3.5e+03	8	21	80	93	79	94	0.86
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	-2.6	0.1	6.1	6e+03	11	21	130	140	128	143	0.69
gi|55376181|ref|YP_134037.1|	234	RHH_1	Ribbon-helix-helix	-1.2	0.2	2.1	2.1e+03	9	20	177	188	176	189	0.80
gi|55376181|ref|YP_134037.1|	234	Prominin	Prominin	15.2	2.0	2.9e-06	0.0029	632	725	41	134	21	139	0.83
gi|55376181|ref|YP_134037.1|	234	Prominin	Prominin	2.3	0.1	0.023	22	616	661	166	224	143	233	0.74
gi|55376181|ref|YP_134037.1|	234	Cep57_CLD_2	Centrosome	13.0	3.7	7.4e-05	0.073	11	60	66	118	62	126	0.83
gi|55376181|ref|YP_134037.1|	234	Cep57_CLD_2	Centrosome	9.2	2.7	0.0011	1.1	37	66	120	150	112	158	0.76
gi|55376181|ref|YP_134037.1|	234	Cep57_CLD_2	Centrosome	1.6	0.2	0.27	2.6e+02	5	24	198	218	194	226	0.75
gi|55376181|ref|YP_134037.1|	234	CSTF_C	Transcription	5.3	0.0	0.011	11	24	38	124	138	118	139	0.81
gi|55376181|ref|YP_134037.1|	234	CSTF_C	Transcription	5.0	0.3	0.014	14	28	41	195	208	193	216	0.89
gi|55376181|ref|YP_134037.1|	234	WXG100	Proteins	11.7	1.1	0.00019	0.18	7	71	80	144	75	147	0.93
gi|55376181|ref|YP_134037.1|	234	WXG100	Proteins	3.0	0.2	0.1	99	22	47	170	196	154	213	0.81
gi|55376181|ref|YP_134037.1|	234	AAA_13	AAA	10.3	8.2	0.00017	0.17	279	413	79	216	53	229	0.66
gi|55376181|ref|YP_134037.1|	234	EMP24_GP25L	emp24/gp25L/p24	14.6	2.9	2e-05	0.02	105	154	70	119	28	123	0.83
gi|55376181|ref|YP_134037.1|	234	EMP24_GP25L	emp24/gp25L/p24	0.7	0.6	0.35	3.5e+02	100	123	161	184	131	218	0.73
gi|55376181|ref|YP_134037.1|	234	Activator-TraM	Transcriptional	11.2	5.1	0.00018	0.18	33	127	61	152	50	167	0.82
gi|55376181|ref|YP_134037.1|	234	Activator-TraM	Transcriptional	-0.1	0.2	0.55	5.5e+02	81	98	174	191	145	226	0.52
gi|55376181|ref|YP_134037.1|	234	PilJ	Type	10.5	1.2	0.00058	0.57	37	101	78	146	46	157	0.75
gi|55376181|ref|YP_134037.1|	234	PilJ	Type	4.4	2.0	0.045	44	38	81	119	177	114	230	0.68
gi|55376181|ref|YP_134037.1|	234	Semialdhyde_dhC	Semialdehyde	2.1	0.3	0.14	1.4e+02	46	91	47	92	18	108	0.60
gi|55376181|ref|YP_134037.1|	234	Semialdhyde_dhC	Semialdehyde	9.6	0.8	0.00077	0.76	11	91	114	194	110	201	0.86
gi|55376181|ref|YP_134037.1|	234	PLAC9	Placenta-specific	8.1	0.2	0.003	3	20	47	100	127	91	139	0.80
gi|55376181|ref|YP_134037.1|	234	PLAC9	Placenta-specific	1.7	0.4	0.32	3.1e+02	21	39	169	187	151	211	0.77
gi|55376181|ref|YP_134037.1|	234	DUF3373	Protein	5.2	3.8	0.0061	6	26	86	78	155	59	214	0.69
gi|55376181|ref|YP_134037.1|	234	COG2	COG	6.9	3.8	0.0052	5.2	48	109	63	124	50	166	0.86
gi|55376181|ref|YP_134037.1|	234	COG2	COG	2.9	0.3	0.089	88	86	114	169	197	150	213	0.76
gi|55376181|ref|YP_134037.1|	234	Ax_dynein_light	Axonemal	12.5	10.2	9.6e-05	0.095	118	185	75	146	56	151	0.84
gi|55376181|ref|YP_134037.1|	234	Ax_dynein_light	Axonemal	0.1	2.3	0.62	6.1e+02	131	181	167	217	149	225	0.72
gi|55376181|ref|YP_134037.1|	234	ORF6C	ORF6C	10.0	3.2	0.00053	0.52	6	60	75	129	71	137	0.84
gi|55376181|ref|YP_134037.1|	234	ORF6C	ORF6C	0.4	0.1	0.51	5e+02	12	37	128	153	119	160	0.79
gi|55376181|ref|YP_134037.1|	234	ORF6C	ORF6C	-0.3	0.1	0.84	8.3e+02	10	42	168	200	161	216	0.71
gi|55376182|ref|YP_134038.1|	47	Mu-like_Com	Mu-like	7.4	0.0	0.0029	2.1	23	36	7	20	1	24	0.83
gi|55376182|ref|YP_134038.1|	47	Mu-like_Com	Mu-like	6.8	0.1	0.0045	3.3	3	12	30	39	28	44	0.84
gi|55376182|ref|YP_134038.1|	47	C1_1	Phorbol	14.9	0.2	2.2e-05	0.016	8	36	5	39	1	42	0.82
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_5	zinc-ribbon	12.9	1.4	8.2e-05	0.06	1	37	7	43	7	43	0.86
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_4	zinc-ribbon	12.3	1.4	0.00014	0.1	1	35	7	41	7	42	0.82
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_4	zinc-ribbon	3.8	0.3	0.061	45	4	14	33	43	31	46	0.68
gi|55376182|ref|YP_134038.1|	47	zf-DNA_Pol	DNA	13.0	0.1	6.2e-05	0.046	16	57	6	43	2	46	0.84
gi|55376182|ref|YP_134038.1|	47	zf-CHY	CHY	13.5	0.2	7.7e-05	0.057	40	71	7	41	1	44	0.81
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_2	zinc-ribbon	10.9	0.2	0.00031	0.23	1	10	10	19	10	21	0.87
gi|55376182|ref|YP_134038.1|	47	zinc_ribbon_2	zinc-ribbon	1.5	0.0	0.29	2.1e+02	15	20	33	38	25	41	0.74
gi|55376182|ref|YP_134038.1|	47	zf-ribbon_3	zinc-ribbon	9.5	0.0	0.00071	0.53	2	11	8	17	7	28	0.75
gi|55376182|ref|YP_134038.1|	47	zf-ribbon_3	zinc-ribbon	1.7	0.0	0.21	1.6e+02	4	10	33	39	30	46	0.70
gi|55376182|ref|YP_134038.1|	47	OrfB_Zn_ribbon	Putative	12.5	0.3	0.00011	0.083	27	53	7	38	1	41	0.85
gi|55376182|ref|YP_134038.1|	47	Cytochrom_c3_2	Cytochrome	13.1	0.9	0.00012	0.087	4	34	6	39	3	47	0.66
gi|55376182|ref|YP_134038.1|	47	DUF35_N	Rubredoxin-like	4.1	0.1	0.061	46	28	34	11	17	7	21	0.74
gi|55376182|ref|YP_134038.1|	47	DUF35_N	Rubredoxin-like	9.7	0.6	0.001	0.76	10	21	30	41	30	44	0.89
gi|55376182|ref|YP_134038.1|	47	LRV_FeS	LRV	12.1	0.4	0.00014	0.11	9	38	6	38	2	42	0.83
gi|55376182|ref|YP_134038.1|	47	DZR	Double	12.1	0.7	0.00016	0.12	14	37	10	39	3	47	0.80
gi|55376182|ref|YP_134038.1|	47	Zn-ribbon_8	Zinc	10.5	1.9	0.0006	0.44	7	34	10	39	5	44	0.91
gi|55376182|ref|YP_134038.1|	47	Zn_Tnp_IS1595	Transposase	10.4	2.5	0.00058	0.43	19	45	9	39	4	40	0.88
gi|55376182|ref|YP_134038.1|	47	zf-C2H2_6	C2H2-type	4.2	0.3	0.055	41	3	9	10	16	10	17	0.85
gi|55376182|ref|YP_134038.1|	47	zf-C2H2_6	C2H2-type	7.9	0.1	0.0039	2.9	3	12	33	42	31	46	0.87
gi|55376182|ref|YP_134038.1|	47	Cytochrome_C7	Cytochrome	9.9	3.0	0.00071	0.52	13	45	9	38	1	46	0.51
gi|55376182|ref|YP_134038.1|	47	RNA_POL_M_15KD	RNA	10.5	0.1	0.0005	0.37	18	33	5	21	1	23	0.77
gi|55376182|ref|YP_134038.1|	47	RNA_POL_M_15KD	RNA	1.7	0.2	0.27	2e+02	18	26	27	37	22	39	0.67
gi|55376182|ref|YP_134038.1|	47	DNA_RNApol_7kD	DNA	5.6	3.3	0.014	11	3	24	11	38	10	41	0.65
gi|55376182|ref|YP_134038.1|	47	UPF0547	Uncharacterised	9.1	0.1	0.0013	0.99	14	21	8	15	6	17	0.85
gi|55376182|ref|YP_134038.1|	47	UPF0547	Uncharacterised	1.4	0.5	0.34	2.6e+02	16	20	33	37	32	39	0.88
gi|55376184|ref|YP_134040.1|	104	PadR	Transcriptional	21.5	0.0	1.7e-07	0.00014	9	73	36	92	27	94	0.77
gi|55376184|ref|YP_134040.1|	104	MarR_2	MarR	18.5	0.0	1.4e-06	0.0011	3	61	19	79	17	80	0.81
gi|55376184|ref|YP_134040.1|	104	HTH_27	Winged	18.3	0.1	2.7e-06	0.0021	27	68	49	88	21	88	0.83
gi|55376184|ref|YP_134040.1|	104	HTH_20	Helix-turn-helix	17.2	0.0	4.1e-06	0.0032	27	58	43	74	39	77	0.87
gi|55376184|ref|YP_134040.1|	104	DUF4364	Domain	16.9	0.0	4.5e-06	0.0035	37	79	58	100	56	104	0.89
gi|55376184|ref|YP_134040.1|	104	Replic_Relax	Replication-relaxation	16.7	0.0	6.2e-06	0.0048	15	76	42	98	39	103	0.85
gi|55376184|ref|YP_134040.1|	104	DUF505	Protein	14.6	0.0	8.4e-06	0.0065	331	370	56	95	42	103	0.87
gi|55376184|ref|YP_134040.1|	104	Rrf2	Transcriptional	16.1	0.0	1.1e-05	0.0086	10	58	23	73	16	76	0.76
gi|55376184|ref|YP_134040.1|	104	HTH_45	Winged	14.0	0.0	4.1e-05	0.032	35	70	56	96	48	100	0.86
gi|55376184|ref|YP_134040.1|	104	TrmB	Sugar-specific	13.9	0.0	4.1e-05	0.032	26	58	44	76	38	86	0.79
gi|55376184|ref|YP_134040.1|	104	HTH_11	HTH	13.5	0.0	5.2e-05	0.041	24	48	49	72	43	75	0.88
gi|55376184|ref|YP_134040.1|	104	GntR	Bacterial	13.2	0.0	5.7e-05	0.044	33	56	49	72	44	75	0.90
gi|55376184|ref|YP_134040.1|	104	HTH_DeoR	DeoR-like	13.1	0.0	6.4e-05	0.05	18	44	44	70	39	73	0.88
gi|55376184|ref|YP_134040.1|	104	Mrr_N	Mrr	13.7	0.0	6.1e-05	0.047	57	89	57	93	41	96	0.80
gi|55376184|ref|YP_134040.1|	104	PaaX	PaaX-like	13.6	0.0	6.1e-05	0.048	31	70	48	88	27	88	0.85
gi|55376184|ref|YP_134040.1|	104	Ribosomal_S19e	Ribosomal	12.6	0.0	8.5e-05	0.066	91	129	51	93	34	101	0.83
gi|55376184|ref|YP_134040.1|	104	HTH_34	Winged	13.0	0.0	9.5e-05	0.074	22	76	48	99	41	103	0.80
gi|55376184|ref|YP_134040.1|	104	HTH_12	Ribonuclease	12.0	0.0	0.00016	0.12	26	56	48	78	39	92	0.74
gi|55376184|ref|YP_134040.1|	104	RPA_C	Replication	12.3	0.0	0.0002	0.16	36	98	10	73	1	76	0.76
gi|55376186|ref|YP_134042.1|	515	AAA_33	AAA	10.5	0.0	8.3e-05	0.41	1	38	90	126	90	147	0.74
gi|55376186|ref|YP_134042.1|	515	AAA_33	AAA	6.4	0.0	0.0014	7.1	25	74	245	303	231	307	0.71
gi|55376186|ref|YP_134042.1|	515	zf-CCHC_3	Zinc	11.4	0.0	3.9e-05	0.19	12	22	276	286	275	299	0.75
gi|55376186|ref|YP_134042.1|	515	AAA_22	AAA	10.9	0.0	7.6e-05	0.37	4	30	88	114	84	152	0.75