# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DUF2721 PF11026.8 gi|55376108|ref|YP_133965.1| - 0.0085 16.0 4.1 0.12 12.3 1.8 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2721) DUF2207 PF09972.9 gi|55376108|ref|YP_133965.1| - 0.012 14.5 1.1 0.37 9.5 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF998 PF06197.13 gi|55376108|ref|YP_133965.1| - 0.02 14.5 5.6 0.15 11.7 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF998) AvrD PF05655.11 gi|55376108|ref|YP_133965.1| - 0.18 11.1 0.0 0.25 10.6 0.0 1.1 1 0 0 1 1 1 0 Pseudomonas avirulence D protein (AvrD) Tetraspanin PF00335.20 gi|55376108|ref|YP_133965.1| - 0.21 11.3 1.2 0.32 10.7 0.1 1.7 1 1 1 2 2 2 0 Tetraspanin family Deltameth_res PF16020.5 gi|55376108|ref|YP_133965.1| - 1.7 8.6 7.2 13 5.7 0.1 3.3 3 0 0 3 3 3 0 Deltamethrin resistance DUF202 PF02656.15 gi|55376108|ref|YP_133965.1| - 2.6 8.5 7.8 1.4 9.4 3.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF4231 PF14015.6 gi|55376108|ref|YP_133965.1| - 7.3 7.1 7.5 13 6.3 2.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF1194 PF06707.11 gi|55376111|ref|YP_133968.1| - 0.057 12.6 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1194) Na_trans_assoc PF06512.13 gi|55376111|ref|YP_133968.1| - 0.13 12.6 1.7 0.14 12.4 1.7 1.1 1 0 0 1 1 1 0 Sodium ion transport-associated DUF3606 PF12244.8 gi|55376113|ref|YP_133970.1| - 0.055 13.4 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) DUF3917 PF13055.6 gi|55376114|ref|YP_133971.1| - 0.095 13.1 0.5 0.12 12.8 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) HTH_12 PF08461.10 gi|55376115|ref|YP_133972.1| - 0.00033 20.5 0.0 0.00065 19.6 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF3658 PF12395.8 gi|55376115|ref|YP_133972.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function tRNA_anti-codon PF01336.25 gi|55376116|ref|YP_133973.1| - 9.9e-08 31.9 0.1 0.0043 17.0 0.1 2.3 2 0 0 2 2 2 2 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|55376116|ref|YP_133973.1| - 0.00039 20.3 0.8 0.0012 18.8 0.1 2.0 2 1 1 3 3 3 1 Replication protein A OB domain PRC PF05239.16 gi|55376116|ref|YP_133973.1| - 0.074 13.1 0.4 0.17 12.0 0.4 1.7 1 0 0 1 1 1 0 PRC-barrel domain SSB PF00436.25 gi|55376116|ref|YP_133973.1| - 0.15 12.1 0.0 17 5.5 0.0 2.3 2 0 0 2 2 2 0 Single-strand binding protein family zf-C3HC4_3 PF13920.6 gi|55376116|ref|YP_133973.1| - 0.17 11.8 1.6 0.28 11.1 1.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.6 gi|55376116|ref|YP_133973.1| - 0.25 11.3 1.9 0.42 10.6 1.9 1.3 1 0 0 1 1 1 0 zinc-RING finger domain DUF4327 PF14217.6 gi|55376117|ref|YP_133974.1| - 0.089 12.9 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4327) DUF4164 PF13747.6 gi|55376118|ref|YP_133975.1| - 0.034 14.4 2.5 0.31 11.3 2.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) ABC_tran_CTD PF16326.5 gi|55376118|ref|YP_133975.1| - 0.55 10.5 5.0 1.5 9.1 5.0 1.8 1 1 0 1 1 1 0 ABC transporter C-terminal domain DUF505 PF04458.12 gi|55376122|ref|YP_133978.1| - 8.7e-06 24.4 0.0 1.1e-05 24.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.14 gi|55376122|ref|YP_133978.1| - 2.7e-05 24.0 0.0 3.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|55376122|ref|YP_133978.1| - 3.9e-05 24.1 0.0 5.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|55376122|ref|YP_133978.1| - 6.3e-05 22.8 0.0 7.4e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) MarR_2 PF12802.7 gi|55376122|ref|YP_133978.1| - 0.00085 19.2 0.2 0.0012 18.7 0.2 1.3 1 0 0 1 1 1 1 MarR family PaaX PF07848.12 gi|55376122|ref|YP_133978.1| - 0.006 16.8 0.1 0.0083 16.3 0.1 1.2 1 0 0 1 1 1 1 PaaX-like protein Rrf2 PF02082.20 gi|55376122|ref|YP_133978.1| - 0.0068 16.7 0.0 0.01 16.2 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|55376122|ref|YP_133978.1| - 0.0082 16.2 0.2 0.015 15.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|55376122|ref|YP_133978.1| - 0.013 15.5 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1611_N PF17396.2 gi|55376122|ref|YP_133978.1| - 0.016 15.4 0.1 1.8 8.9 0.0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain TrmB PF01978.19 gi|55376122|ref|YP_133978.1| - 0.025 14.4 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|55376122|ref|YP_133978.1| - 0.031 14.4 0.0 0.046 13.8 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain Ribosomal_S19e PF01090.19 gi|55376122|ref|YP_133978.1| - 0.032 13.9 0.0 0.052 13.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e GntR PF00392.21 gi|55376122|ref|YP_133978.1| - 0.035 13.7 0.1 0.059 13.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|55376122|ref|YP_133978.1| - 0.036 14.2 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HxlR PF01638.17 gi|55376122|ref|YP_133978.1| - 0.042 13.7 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_DeoR PF08220.12 gi|55376122|ref|YP_133978.1| - 0.043 13.6 0.1 0.082 12.7 0.0 1.5 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|55376122|ref|YP_133978.1| - 0.052 13.5 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain Replic_Relax PF13814.6 gi|55376122|ref|YP_133978.1| - 0.062 13.4 0.0 0.082 13.0 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.6 gi|55376122|ref|YP_133978.1| - 0.12 12.4 0.0 0.3 11.1 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|55376122|ref|YP_133978.1| - 0.13 12.1 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-CCHC_3 PF13917.6 gi|55376123|ref|YP_133980.1| - 0.13 12.2 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Zinc knuckle AAA_33 PF13671.6 gi|55376123|ref|YP_133980.1| - 0.16 12.1 0.0 17 5.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain Terminase_GpA PF05876.12 gi|55376125|ref|YP_133982.1| - 0.00042 19.0 0.4 0.00042 19.0 0.4 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) Rubredoxin_2 PF18073.1 gi|55376125|ref|YP_133982.1| - 0.0084 15.8 1.8 0.047 13.4 0.1 2.1 2 0 0 2 2 2 1 Rubredoxin metal binding domain DZR PF12773.7 gi|55376125|ref|YP_133982.1| - 0.023 14.7 0.3 0.046 13.7 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|55376125|ref|YP_133982.1| - 0.029 14.3 0.3 1.4 9.0 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbons zf-dskA_traR PF01258.17 gi|55376125|ref|YP_133982.1| - 0.046 13.7 3.3 0.15 12.0 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|55376125|ref|YP_133982.1| - 0.049 13.1 2.4 0.84 9.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FANCL_C PF11793.8 gi|55376125|ref|YP_133982.1| - 0.063 13.5 0.9 5.2 7.3 0.1 2.1 1 1 1 2 2 2 0 FANCL C-terminal domain zf-ACC PF17848.1 gi|55376125|ref|YP_133982.1| - 0.097 12.8 2.4 8.8 6.5 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DiS_P_DiS PF06750.13 gi|55376125|ref|YP_133982.1| - 0.099 12.8 0.1 0.9 9.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf_UBZ PF18439.1 gi|55376125|ref|YP_133982.1| - 0.11 12.1 0.9 0.98 9.1 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|55376125|ref|YP_133982.1| - 0.16 12.5 1.4 0.5 10.9 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|55376125|ref|YP_133982.1| - 1.2 9.3 5.8 2 8.6 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Phage_integrase PF00589.22 gi|55376126|ref|YP_133983.1| - 1.3e-14 54.4 0.0 8.6e-14 51.7 0.0 2.1 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|55376126|ref|YP_133983.1| - 3.3e-07 30.5 0.3 9.6e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|55376126|ref|YP_133983.1| - 2.1e-06 28.0 0.0 3.8e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|55376126|ref|YP_133983.1| - 0.085 13.3 0.0 0.2 12.2 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Arg_decarbox_C PF17944.1 gi|55376126|ref|YP_133983.1| - 0.091 13.3 0.0 0.35 11.5 0.0 2.0 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension DUF3435 PF11917.8 gi|55376126|ref|YP_133983.1| - 0.092 11.7 0.0 0.39 9.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) KAP_NTPase PF07693.14 gi|55376127|ref|YP_133984.1| - 0.21 10.8 0.0 3.2 6.9 0.0 2.4 2 1 1 3 3 3 0 KAP family P-loop domain Cdc6_C PF09079.11 gi|55376130|ref|YP_133987.1| - 5.5e-15 55.1 0.0 1.4e-14 53.8 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|55376130|ref|YP_133987.1| - 1.5e-10 41.5 0.0 3.2e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|55376130|ref|YP_133987.1| - 3.1e-10 40.7 0.5 6.7e-09 36.3 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|55376130|ref|YP_133987.1| - 1.8e-05 25.1 0.3 0.00028 21.3 0.1 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|55376130|ref|YP_133987.1| - 6.3e-05 23.0 0.2 0.002 18.1 0.2 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|55376130|ref|YP_133987.1| - 0.0001 22.3 0.0 0.00029 20.8 0.0 1.8 2 0 0 2 2 2 1 NACHT domain DUF815 PF05673.13 gi|55376130|ref|YP_133987.1| - 0.00042 19.5 0.0 0.00084 18.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ATPase_2 PF01637.18 gi|55376130|ref|YP_133987.1| - 0.0012 18.8 0.1 0.0043 17.0 0.0 1.9 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|55376130|ref|YP_133987.1| - 0.0016 18.2 0.1 0.0048 16.6 0.1 1.8 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|55376130|ref|YP_133987.1| - 0.0069 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) PhoH PF02562.16 gi|55376130|ref|YP_133987.1| - 0.0095 15.4 0.1 0.92 8.9 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein RNA_helicase PF00910.22 gi|55376130|ref|YP_133987.1| - 0.016 15.6 0.1 0.036 14.5 0.1 1.6 1 0 0 1 1 1 0 RNA helicase PFO_beta_C PF12367.8 gi|55376130|ref|YP_133987.1| - 0.046 13.8 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal AAA_18 PF13238.6 gi|55376130|ref|YP_133987.1| - 0.049 14.2 0.1 0.22 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|55376130|ref|YP_133987.1| - 0.054 14.0 0.0 0.16 12.4 0.0 1.9 1 0 0 1 1 1 0 ABC transporter Mg_chelatase PF01078.21 gi|55376130|ref|YP_133987.1| - 0.12 11.8 0.0 0.39 10.1 0.0 1.8 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI DAP3 PF10236.9 gi|55376130|ref|YP_133987.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 HNH_repeat PF18780.1 gi|55376131|ref|YP_133988.1| - 3.2e-23 81.2 12.2 1.5e-08 34.3 0.5 4.3 4 0 0 4 4 4 4 Homing endonuclease repeat DUF2868 PF11067.8 gi|55376131|ref|YP_133988.1| - 2.3e-06 27.4 1.4 0.21 11.0 0.1 3.7 4 0 0 4 4 4 2 Protein of unknown function (DUF2868) UPF0154 PF03672.13 gi|55376131|ref|YP_133988.1| - 3.9e-06 26.8 0.0 4 7.5 0.0 4.2 4 0 0 4 4 4 1 Uncharacterised protein family (UPF0154) LexA_DNA_bind PF01726.16 gi|55376131|ref|YP_133988.1| - 5.7e-06 26.0 0.0 6.5 6.6 0.0 4.5 5 0 0 5 5 5 1 LexA DNA binding domain HNOB PF07700.15 gi|55376131|ref|YP_133988.1| - 0.00014 21.9 0.0 2.4 8.1 0.0 3.6 4 0 0 4 4 4 2 Haem-NO-binding Sigma70_r3 PF04539.16 gi|55376131|ref|YP_133988.1| - 0.00068 19.7 6.7 4.5 7.5 0.0 4.1 4 0 0 4 4 4 2 Sigma-70 region 3 Ribosomal_L29 PF00831.23 gi|55376131|ref|YP_133988.1| - 0.0025 17.7 1.7 9.8 6.2 0.0 3.9 4 0 0 4 4 4 1 Ribosomal L29 protein Clr5 PF14420.6 gi|55376131|ref|YP_133988.1| - 0.0048 17.1 0.0 2.3 8.5 0.0 3.7 4 0 0 4 4 4 1 Clr5 domain Filament_head PF04732.14 gi|55376131|ref|YP_133988.1| - 0.024 15.5 2.0 25 5.9 0.5 3.5 4 0 0 4 4 3 0 Intermediate filament head (DNA binding) region Spore_III_AB PF09548.10 gi|55376131|ref|YP_133988.1| - 0.058 13.5 0.1 0.17 12.0 0.0 1.7 2 1 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) MID_pPIWI_RE PF18157.1 gi|55376131|ref|YP_133988.1| - 0.063 13.6 0.0 3.6 7.9 0.0 2.6 2 0 0 2 2 2 0 MID domain of pPIWI_RE IF2_N PF04760.15 gi|55376131|ref|YP_133988.1| - 0.071 12.9 0.0 20 5.1 0.0 3.7 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region RsbRD_N PF14361.6 gi|55376131|ref|YP_133988.1| - 0.1 13.3 1.1 1.5 9.5 0.0 2.7 2 1 2 4 4 3 0 RsbT co-antagonist protein rsbRD N-terminal domain DUF900 PF05990.12 gi|55376131|ref|YP_133988.1| - 0.12 11.9 0.0 0.29 10.6 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) Com_YlbF PF06133.11 gi|55376131|ref|YP_133988.1| - 0.16 12.6 0.1 32 5.2 0.0 2.9 3 0 0 3 3 3 0 Control of competence regulator ComK, YlbF/YmcA Packaging_FI PF14000.6 gi|55376131|ref|YP_133988.1| - 0.59 10.6 2.6 1.4e+02 2.9 0.0 3.7 4 0 0 4 4 4 0 DNA packaging protein FI Imm1 PF14430.6 gi|55376131|ref|YP_133988.1| - 1.1 10.0 3.8 23 5.7 0.1 3.5 2 2 1 3 3 3 0 Immunity protein Imm1 Arch_flagellin PF01917.16 gi|55376132|ref|YP_133989.1| - 2.5e-28 99.3 50.0 1.8e-17 64.0 34.9 3.8 1 1 1 2 2 2 2 Archaebacterial flagellin RL11D PF11088.8 gi|55376132|ref|YP_133989.1| - 0.0015 18.8 0.9 0.0047 17.2 0.1 2.4 2 1 0 2 2 2 1 Glycoprotein encoding membrane proteins RL5A and RL6 MazE_antitoxin PF04014.18 gi|55376132|ref|YP_133989.1| - 0.044 13.7 0.5 0.84 9.6 0.0 3.3 4 0 0 4 4 4 0 Antidote-toxin recognition MazE, bacterial antitoxin Motile_Sperm PF00635.26 gi|55376132|ref|YP_133989.1| - 0.12 12.2 0.0 11 5.9 0.0 2.8 2 0 0 2 2 2 0 MSP (Major sperm protein) domain Flavi_glycop_C PF02832.16 gi|55376132|ref|YP_133989.1| - 0.16 12.1 1.8 0.98 9.6 0.2 3.0 3 1 0 3 3 3 0 Flavivirus glycoprotein, immunoglobulin-like domain Coleoptericin PF06286.11 gi|55376133|ref|YP_133990.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Coleoptericin GalKase_gal_bdg PF10509.9 gi|55376133|ref|YP_133990.1| - 0.13 11.9 0.1 0.29 10.7 0.1 1.6 1 0 0 1 1 1 0 Galactokinase galactose-binding signature DUF4404 PF14357.6 gi|55376133|ref|YP_133990.1| - 0.48 11.1 4.1 1.6 9.4 0.2 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4404) DUF1922 PF09082.10 gi|55376137|ref|YP_133994.1| - 0.31 11.4 0.9 0.92 9.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1922) IBR PF01485.21 gi|55376138|ref|YP_133995.1| - 3.7 7.8 10.4 1.7 8.9 1.6 2.7 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain ResIII PF04851.15 gi|55376142|ref|YP_133999.1| - 5.7e-06 26.4 0.1 3.6e-05 23.8 0.1 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|55376142|ref|YP_133999.1| - 0.01 15.6 0.0 0.023 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MC1 PF05854.11 gi|55376142|ref|YP_133999.1| - 0.054 13.8 1.0 0.2 12.0 0.1 2.2 2 0 0 2 2 2 0 Non-histone chromosomal protein MC1 PhoH PF02562.16 gi|55376142|ref|YP_133999.1| - 0.13 11.7 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Xpo1 PF08389.12 gi|55376143|ref|YP_134000.1| - 0.04 14.0 0.0 0.047 13.7 0.0 1.0 1 0 0 1 1 1 0 Exportin 1-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006389.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006389.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006389.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_marismortui_ATCC_43049_uid57719/NC_006389.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:16:30 2019 # [ok]