# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|564287958|ref|YP_008874149.1| - 1.1e-23 82.7 0.0 4.2e-23 80.8 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|564287958|ref|YP_008874149.1| - 4.9e-10 39.6 0.0 3.6e-09 36.8 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|564287958|ref|YP_008874149.1| - 6.1e-09 36.1 0.0 1.6e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|564287958|ref|YP_008874149.1| - 0.002 17.0 0.0 0.0034 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|564287958|ref|YP_008874149.1| - 0.0026 17.5 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|564287958|ref|YP_008874149.1| - 0.0047 17.1 0.0 0.013 15.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|564287958|ref|YP_008874149.1| - 0.0097 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain RNA_helicase PF00910.17 gi|564287958|ref|YP_008874149.1| - 0.029 14.5 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|564287958|ref|YP_008874149.1| - 0.14 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein DEAD PF00270.24 gi|564287958|ref|YP_008874149.1| - 0.15 11.4 0.4 15 4.9 0.1 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase Hemopexin PF00045.14 gi|564287960|ref|YP_008874151.1| - 0.0094 15.6 1.1 0.089 12.5 0.4 2.5 2 0 0 2 2 2 1 Hemopexin DUF4412 PF14371.1 gi|564287960|ref|YP_008874151.1| - 0.03 14.8 0.5 0.15 12.5 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4412) TetR_C_6 PF13977.1 gi|564287961|ref|YP_008874152.1| - 1.4e-12 47.6 0.2 2.1e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|564287961|ref|YP_008874152.1| - 1.4e-10 40.6 0.3 3e-10 39.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.11 gi|564287961|ref|YP_008874152.1| - 0.032 13.5 0.0 0.08 12.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 ECSIT PF06239.6 gi|564287961|ref|YP_008874152.1| - 0.054 12.3 0.0 0.084 11.7 0.0 1.2 1 0 0 1 1 1 0 Evolutionarily conserved signalling intermediate in Toll pathway HTH_5 PF01022.15 gi|564287961|ref|YP_008874152.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3139 PF11337.3 gi|564287961|ref|YP_008874152.1| - 0.13 12.5 0.1 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) CARDB PF07705.6 gi|564287962|ref|YP_008874153.1| - 8.9e-15 54.5 23.3 0.013 15.5 0.1 5.5 5 0 0 5 5 5 5 CARDB NPCBM_assoc PF10633.4 gi|564287962|ref|YP_008874153.1| - 4.5e-12 45.8 22.6 9.5e-05 22.3 0.3 8.2 7 3 0 7 7 7 3 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|564287962|ref|YP_008874153.1| - 5.8e-06 26.3 1.4 3.7 7.6 0.0 5.2 6 1 0 6 6 6 2 Transglutaminase family, C-terminal ig like domain Fn3-like PF14310.1 gi|564287962|ref|YP_008874153.1| - 1.7e-05 24.6 10.7 1.5 8.8 0.1 7.3 8 1 1 9 9 9 2 Fibronectin type III-like domain DUF11 PF01345.13 gi|564287962|ref|YP_008874153.1| - 5e-05 23.2 29.2 0.073 13.1 2.3 5.7 5 0 0 5 5 5 4 Domain of unknown function DUF11 DUF2393 PF09624.5 gi|564287962|ref|YP_008874153.1| - 0.0034 16.9 8.0 1.6 8.2 0.1 4.6 5 0 0 5 5 5 2 Protein of unknown function (DUF2393) A2M_N PF01835.14 gi|564287962|ref|YP_008874153.1| - 0.064 13.5 0.7 57 4.0 0.0 4.1 3 1 0 3 3 3 0 MG2 domain TRAPPC9-Trs120 PF08626.6 gi|564287962|ref|YP_008874153.1| - 0.26 8.5 0.9 2.7 5.2 0.1 2.1 1 1 0 2 2 2 0 Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit MMPL PF03176.10 gi|564287963|ref|YP_008874154.1| - 1.7e-27 96.0 26.0 3.9e-20 71.8 1.2 2.7 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|564287963|ref|YP_008874154.1| - 1.7e-09 37.3 4.2 2.3e-06 27.1 0.4 2.8 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|564287963|ref|YP_008874154.1| - 4.5e-08 31.5 11.7 8e-07 27.3 4.7 2.5 2 0 0 2 2 2 2 Patched family TetR_C_6 PF13977.1 gi|564287964|ref|YP_008874155.1| - 5.1e-12 45.8 0.0 7.6e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|564287964|ref|YP_008874155.1| - 1e-10 41.0 0.6 2.8e-10 39.6 0.1 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|564287964|ref|YP_008874155.1| - 0.0061 16.0 0.0 0.016 14.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DUF162 PF02589.10 gi|564287965|ref|YP_008874156.1| - 5.5e-35 120.5 0.1 7.4e-35 120.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 OKR_DC_1_N PF03709.10 gi|564287965|ref|YP_008874156.1| - 0.013 15.5 0.1 0.037 14.0 0.1 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Secretin_N PF03958.12 gi|564287965|ref|YP_008874156.1| - 0.021 15.0 1.0 0.071 13.3 0.5 2.2 1 1 1 2 2 2 0 Bacterial type II/III secretion system short domain YcaO PF02624.11 gi|564287965|ref|YP_008874156.1| - 0.047 13.1 0.1 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 YcaO-like family DUF257 PF03192.8 gi|564287965|ref|YP_008874156.1| - 0.11 11.7 0.0 0.6 9.3 0.0 1.9 2 0 0 2 2 2 0 Pyrococcus protein of unknown function, DUF257 C1_3 PF07649.7 gi|564287966|ref|YP_008874157.1| - 0.00088 19.2 4.5 0.17 11.9 0.3 2.1 2 0 0 2 2 2 2 C1-like domain DUF2296 PF10058.4 gi|564287966|ref|YP_008874157.1| - 0.0013 18.4 0.2 0.0019 17.9 0.1 1.3 1 1 0 1 1 1 1 Predicted integral membrane metal-binding protein (DUF2296) C1_4 PF07975.7 gi|564287966|ref|YP_008874157.1| - 0.0042 17.0 0.4 0.35 10.9 0.0 2.1 2 0 0 2 2 2 1 TFIIH C1-like domain zinc-ribbons_6 PF07191.7 gi|564287966|ref|YP_008874157.1| - 0.0054 16.4 0.2 0.59 9.9 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbons zf-RING_3 PF14369.1 gi|564287966|ref|YP_008874157.1| - 0.014 15.4 1.3 2.6 8.1 0.2 2.1 2 0 0 2 2 2 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|564287966|ref|YP_008874157.1| - 0.015 14.9 1.9 0.21 11.2 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|564287966|ref|YP_008874157.1| - 0.019 14.6 1.6 0.27 10.9 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|564287966|ref|YP_008874157.1| - 0.021 14.6 1.4 0.054 13.3 1.0 1.7 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|564287966|ref|YP_008874157.1| - 0.026 14.2 3.3 0.42 10.3 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FYVE PF01363.16 gi|564287966|ref|YP_008874157.1| - 0.03 14.1 0.4 0.1 12.5 0.1 1.8 2 0 0 2 2 2 0 FYVE zinc finger Zn-ribbon_8 PF09723.5 gi|564287966|ref|YP_008874157.1| - 0.039 13.9 1.6 0.53 10.2 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|564287966|ref|YP_008874157.1| - 0.04 13.5 1.1 1.5 8.5 0.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-IS66 PF13005.2 gi|564287966|ref|YP_008874157.1| - 0.054 13.4 0.6 4.7 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_ribbon_recom PF13408.1 gi|564287966|ref|YP_008874157.1| - 0.062 13.5 0.1 0.083 13.1 0.1 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|564287966|ref|YP_008874157.1| - 0.065 12.4 1.4 6 6.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|564287966|ref|YP_008874157.1| - 0.068 13.1 0.7 0.31 11.0 0.1 1.9 2 0 0 2 2 2 0 CpXC protein zf-CSL PF05207.8 gi|564287966|ref|YP_008874157.1| - 0.07 12.6 0.2 0.68 9.4 0.0 2.0 2 0 0 2 2 2 0 CSL zinc finger PhnA_Zn_Ribbon PF08274.7 gi|564287966|ref|YP_008874157.1| - 0.11 12.2 2.9 7 6.5 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|564287966|ref|YP_008874157.1| - 0.12 12.1 1.7 0.5 10.2 1.5 1.7 1 1 1 2 2 2 0 RNHCP domain Zn_Tnp_IS1 PF03811.8 gi|564287966|ref|YP_008874157.1| - 0.14 11.6 1.8 1.1 8.7 0.3 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-NADH-PPase PF09297.6 gi|564287966|ref|YP_008874157.1| - 0.19 11.2 2.8 2.2 7.8 0.5 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-H2C2_2 PF13465.1 gi|564287966|ref|YP_008874157.1| - 0.22 11.8 2.0 4 7.8 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|564287966|ref|YP_008874157.1| - 0.32 11.4 2.5 1 9.8 0.6 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|564287966|ref|YP_008874157.1| - 0.81 10.1 4.7 2.8 8.4 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_5 PF13909.1 gi|564287966|ref|YP_008874157.1| - 0.81 10.0 5.8 6.1 7.2 1.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc-finger domain zf-C2H2_6 PF13912.1 gi|564287966|ref|YP_008874157.1| - 0.91 9.5 3.9 1 9.3 0.4 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Peripla_BP_2 PF01497.13 gi|564287967|ref|YP_008874158.1| - 1.9e-11 43.5 0.0 3e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|564287968|ref|YP_008874159.1| - 8.5e-85 284.2 33.8 1.1e-84 283.9 23.5 1.1 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|564287969|ref|YP_008874160.1| - 7e-30 104.1 0.0 9.8e-30 103.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|564287969|ref|YP_008874160.1| - 7.5e-15 55.6 0.9 2e-06 27.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|564287969|ref|YP_008874160.1| - 8.6e-13 48.0 0.2 1.9e-06 27.2 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|564287969|ref|YP_008874160.1| - 2.1e-07 30.3 0.0 4.4e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|564287969|ref|YP_008874160.1| - 1.4e-06 27.6 0.0 0.017 14.1 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|564287969|ref|YP_008874160.1| - 6e-06 25.7 2.4 0.00018 21.0 0.5 3.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|564287969|ref|YP_008874160.1| - 6.7e-06 26.2 0.4 4.2e-05 23.7 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|564287969|ref|YP_008874160.1| - 2.5e-05 24.3 2.1 0.00014 21.9 1.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|564287969|ref|YP_008874160.1| - 3.7e-05 22.4 1.1 0.052 12.1 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|564287969|ref|YP_008874160.1| - 0.0001 23.1 0.1 0.002 18.9 0.1 2.5 2 1 0 2 2 1 1 AAA domain AAA_23 PF13476.1 gi|564287969|ref|YP_008874160.1| - 0.00011 22.6 0.0 0.0002 21.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|564287969|ref|YP_008874160.1| - 0.0018 18.1 0.2 0.0057 16.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|564287969|ref|YP_008874160.1| - 0.0028 17.2 0.1 0.0085 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|564287969|ref|YP_008874160.1| - 0.0028 17.3 0.0 0.0055 16.4 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|564287969|ref|YP_008874160.1| - 0.0037 16.9 0.0 0.0073 15.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Adeno_IVa2 PF02456.10 gi|564287969|ref|YP_008874160.1| - 0.0063 15.2 0.0 0.13 10.9 0.0 2.1 2 0 0 2 2 2 1 Adenovirus IVa2 protein AAA_14 PF13173.1 gi|564287969|ref|YP_008874160.1| - 0.0074 16.1 0.0 0.023 14.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|564287969|ref|YP_008874160.1| - 0.0087 15.9 0.0 0.11 12.3 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|564287969|ref|YP_008874160.1| - 0.0087 15.5 0.1 0.024 14.0 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_28 PF13521.1 gi|564287969|ref|YP_008874160.1| - 0.012 15.5 0.0 0.026 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|564287969|ref|YP_008874160.1| - 0.019 14.9 0.2 0.096 12.6 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|564287969|ref|YP_008874160.1| - 0.024 13.8 0.0 0.042 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|564287969|ref|YP_008874160.1| - 0.027 14.1 0.0 0.058 13.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|564287969|ref|YP_008874160.1| - 0.027 14.6 0.1 0.095 12.9 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.12 gi|564287969|ref|YP_008874160.1| - 0.03 13.8 0.1 0.78 9.2 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|564287969|ref|YP_008874160.1| - 0.057 13.6 0.0 0.17 12.0 0.0 1.9 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|564287969|ref|YP_008874160.1| - 0.057 12.8 0.3 0.11 11.9 0.2 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MukB PF04310.7 gi|564287969|ref|YP_008874160.1| - 0.062 12.6 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal Zeta_toxin PF06414.7 gi|564287969|ref|YP_008874160.1| - 0.096 11.7 0.2 0.2 10.6 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.9 gi|564287969|ref|YP_008874160.1| - 0.11 12.2 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PAPS_reduct PF01507.14 gi|564287969|ref|YP_008874160.1| - 0.16 11.7 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family SBF PF01758.11 gi|564287970|ref|YP_008874161.1| - 2.4e-40 137.9 10.6 3.6e-40 137.3 7.4 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|564287970|ref|YP_008874161.1| - 4e-14 52.4 8.7 5.4e-14 51.9 6.1 1.2 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|564287970|ref|YP_008874161.1| - 0.0059 14.9 9.9 0.0072 14.6 3.8 2.2 2 1 0 2 2 2 1 Membrane transport protein Intg_mem_TP0381 PF09529.5 gi|564287970|ref|YP_008874161.1| - 0.33 10.1 3.8 4.8 6.3 0.0 2.4 2 1 0 2 2 2 0 Integral membrane protein (intg_mem_TP0381) DUF2636 PF11120.3 gi|564287970|ref|YP_008874161.1| - 0.81 9.2 3.8 0.74 9.3 0.3 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2636) UbiA PF01040.13 gi|564287971|ref|YP_008874162.1| - 5.5e-20 71.6 21.1 7.3e-20 71.2 14.6 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family HATPase_c PF02518.21 gi|564287972|ref|YP_008874163.1| - 3e-14 52.6 0.1 6e-14 51.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|564287972|ref|YP_008874163.1| - 3.9e-05 23.4 0.0 7.7e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.5 gi|564287972|ref|YP_008874163.1| - 0.0005 20.0 0.1 0.0028 17.6 0.1 2.3 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|564287972|ref|YP_008874163.1| - 0.001 18.8 0.0 0.0048 16.7 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|564287972|ref|YP_008874163.1| - 0.0033 17.1 0.1 0.011 15.4 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|564287972|ref|YP_008874163.1| - 0.0036 17.6 0.0 0.016 15.5 0.0 2.1 1 1 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|564287972|ref|YP_008874163.1| - 0.0036 17.5 0.1 0.012 15.8 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|564287972|ref|YP_008874163.1| - 0.0064 16.1 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TusA PF01206.12 gi|564287973|ref|YP_008874164.1| - 6.5e-07 28.8 0.0 8.7e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA ANF_receptor PF01094.23 gi|564287973|ref|YP_008874164.1| - 0.058 12.1 0.0 0.067 11.9 0.0 1.1 1 0 0 1 1 1 0 Receptor family ligand binding region HXXSHH PF07586.6 gi|564287973|ref|YP_008874164.1| - 0.074 11.9 0.1 0.087 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) DUF2270 PF10028.4 gi|564287974|ref|YP_008874165.1| - 2.2e-63 213.0 5.8 2.7e-63 212.8 4.0 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Acyl_transf_3 PF01757.17 gi|564287974|ref|YP_008874165.1| - 0.035 12.9 3.0 0.048 12.4 0.1 2.0 2 0 0 2 2 2 0 Acyltransferase family IncA PF04156.9 gi|564287975|ref|YP_008874166.1| - 4.5e-05 23.1 10.8 5.7e-05 22.7 7.5 1.3 1 0 0 1 1 1 1 IncA protein Atg14 PF10186.4 gi|564287975|ref|YP_008874166.1| - 8.3e-05 21.6 9.1 9.7e-05 21.4 6.3 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 HemX PF04375.9 gi|564287975|ref|YP_008874166.1| - 0.00056 18.6 9.5 0.00096 17.8 6.6 1.4 1 1 0 1 1 1 1 HemX Cast PF10174.4 gi|564287975|ref|YP_008874166.1| - 0.0012 17.0 12.6 0.0014 16.8 8.7 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Mt_ATP-synt_B PF05405.9 gi|564287975|ref|YP_008874166.1| - 0.0016 17.9 5.4 0.0084 15.5 2.4 2.0 1 1 1 2 2 2 2 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Rab5-bind PF09311.6 gi|564287975|ref|YP_008874166.1| - 0.0018 18.1 15.0 0.0021 17.9 10.4 1.0 1 0 0 1 1 1 1 Rabaptin-like protein DUF3552 PF12072.3 gi|564287975|ref|YP_008874166.1| - 0.0033 16.6 11.3 0.0039 16.4 7.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) Spore_coat_CotO PF14153.1 gi|564287975|ref|YP_008874166.1| - 0.0041 16.5 8.7 0.006 16.0 6.0 1.2 1 0 0 1 1 1 1 Spore coat protein CotO GBP_C PF02841.9 gi|564287975|ref|YP_008874166.1| - 0.0059 15.8 9.8 0.0067 15.6 6.8 1.0 1 0 0 1 1 1 1 Guanylate-binding protein, C-terminal domain Mod_r PF07200.8 gi|564287975|ref|YP_008874166.1| - 0.0068 16.3 7.7 0.0088 15.9 5.4 1.2 1 0 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein DUF3450 PF11932.3 gi|564287975|ref|YP_008874166.1| - 0.012 14.9 7.1 0.015 14.6 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Tho2 PF11262.3 gi|564287975|ref|YP_008874166.1| - 0.012 14.6 5.1 0.015 14.3 3.5 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 ADIP PF11559.3 gi|564287975|ref|YP_008874166.1| - 0.012 15.5 15.5 0.018 14.9 10.7 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF3373 PF11853.3 gi|564287975|ref|YP_008874166.1| - 0.012 14.1 2.5 0.014 13.9 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF972 PF06156.8 gi|564287975|ref|YP_008874166.1| - 0.015 15.6 7.8 0.015 15.6 5.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF972) HALZ PF02183.13 gi|564287975|ref|YP_008874166.1| - 0.019 14.6 2.6 0.019 14.6 1.8 2.4 2 1 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|564287975|ref|YP_008874166.1| - 0.02 14.3 3.1 0.02 14.3 2.1 2.3 1 1 1 2 2 2 0 Septum formation initiator PEARLI-4 PF05278.7 gi|564287975|ref|YP_008874166.1| - 0.02 14.2 6.2 0.028 13.8 4.3 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) V_ATPase_I PF01496.14 gi|564287975|ref|YP_008874166.1| - 0.021 12.6 4.9 0.023 12.5 3.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FadA PF09403.5 gi|564287975|ref|YP_008874166.1| - 0.025 14.6 11.8 0.036 14.0 7.9 1.5 1 1 0 1 1 1 0 Adhesion protein FadA Bac_GDH PF05088.7 gi|564287975|ref|YP_008874166.1| - 0.027 11.8 2.1 0.031 11.6 1.5 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase DivIVA PF05103.8 gi|564287975|ref|YP_008874166.1| - 0.03 14.3 14.5 0.042 13.9 10.0 1.1 1 0 0 1 1 1 0 DivIVA protein Kinetocho_Slk19 PF12709.2 gi|564287975|ref|YP_008874166.1| - 0.036 14.1 3.4 0.036 14.1 2.4 2.6 1 1 2 3 3 2 0 Central kinetochore-associated APG6 PF04111.7 gi|564287975|ref|YP_008874166.1| - 0.064 12.2 10.9 0.091 11.7 7.5 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Bacillus_HBL PF05791.6 gi|564287975|ref|YP_008874166.1| - 0.089 12.1 3.7 0.11 11.8 2.6 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) TRAP_alpha PF03896.11 gi|564287975|ref|YP_008874166.1| - 0.1 11.5 2.7 0.13 11.2 1.9 1.1 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit CesA PF11439.3 gi|564287975|ref|YP_008874166.1| - 0.11 12.3 1.6 0.16 11.8 1.1 1.3 1 0 0 1 1 1 0 Type III secretion system filament chaperone CesA TBPIP PF07106.8 gi|564287975|ref|YP_008874166.1| - 0.12 11.9 11.0 0.15 11.5 7.6 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Jnk-SapK_ap_N PF09744.4 gi|564287975|ref|YP_008874166.1| - 0.12 12.3 10.7 0.15 12.0 7.4 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF3584 PF12128.3 gi|564287975|ref|YP_008874166.1| - 0.16 9.3 13.0 0.18 9.1 9.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Spc7 PF08317.6 gi|564287975|ref|YP_008874166.1| - 0.16 10.6 9.9 0.19 10.3 6.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4527 PF15030.1 gi|564287975|ref|YP_008874166.1| - 0.17 11.1 5.2 0.22 10.8 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) AAA_23 PF13476.1 gi|564287975|ref|YP_008874166.1| - 0.24 11.6 4.5 0.3 11.4 3.1 1.2 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|564287975|ref|YP_008874166.1| - 0.26 9.6 5.4 0.3 9.4 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF4407 PF14362.1 gi|564287975|ref|YP_008874166.1| - 0.27 10.1 7.8 0.35 9.7 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Ycf1 PF05758.7 gi|564287975|ref|YP_008874166.1| - 0.28 8.8 2.7 0.29 8.7 1.9 1.0 1 0 0 1 1 1 0 Ycf1 THOC7 PF05615.8 gi|564287975|ref|YP_008874166.1| - 0.31 11.2 19.4 1 9.6 6.3 2.1 1 1 1 2 2 2 0 Tho complex subunit 7 Herpes_UL25 PF01499.11 gi|564287975|ref|YP_008874166.1| - 0.33 9.2 8.4 0.38 8.9 5.8 1.0 1 0 0 1 1 1 0 Herpesvirus UL25 family Syntaxin PF00804.20 gi|564287975|ref|YP_008874166.1| - 0.33 11.1 11.6 0.46 10.6 8.1 1.1 1 0 0 1 1 1 0 Syntaxin AAA_13 PF13166.1 gi|564287975|ref|YP_008874166.1| - 0.33 9.3 8.2 0.4 9.0 5.7 1.1 1 0 0 1 1 1 0 AAA domain FUSC PF04632.7 gi|564287975|ref|YP_008874166.1| - 0.34 9.2 4.2 0.43 8.9 2.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family SPX PF03105.14 gi|564287975|ref|YP_008874166.1| - 0.4 10.4 8.7 0.47 10.2 6.0 1.1 1 0 0 1 1 1 0 SPX domain BLOC1_2 PF10046.4 gi|564287975|ref|YP_008874166.1| - 0.55 10.4 10.0 1.7 8.8 0.5 2.2 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|564287975|ref|YP_008874166.1| - 0.58 9.9 9.7 2.2 8.0 6.4 1.9 1 1 1 2 2 2 0 Laminin Domain II DUF2570 PF10828.3 gi|564287975|ref|YP_008874166.1| - 0.63 9.6 8.0 0.78 9.3 5.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) DUF1510 PF07423.6 gi|564287975|ref|YP_008874166.1| - 1 8.7 8.0 1.3 8.3 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF641 PF04859.7 gi|564287975|ref|YP_008874166.1| - 1 9.1 7.8 1.6 8.4 5.4 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) HlyD_2 PF12700.2 gi|564287975|ref|YP_008874166.1| - 1.3 8.1 7.7 1.6 7.8 5.4 1.1 1 0 0 1 1 1 0 HlyD family secretion protein NYD-SP28_assoc PF14775.1 gi|564287975|ref|YP_008874166.1| - 1.4 8.6 9.8 0.12 12.0 1.9 2.3 1 1 1 2 2 2 0 Sperm tail C-terminal domain Bap31 PF05529.7 gi|564287975|ref|YP_008874166.1| - 1.7 8.0 10.7 1.7 8.0 6.1 1.8 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Fmp27_WPPW PF10359.4 gi|564287975|ref|YP_008874166.1| - 1.9 6.8 9.9 2.2 6.5 6.9 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4200 PF13863.1 gi|564287975|ref|YP_008874166.1| - 2 8.3 18.5 1.2 9.1 5.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Prefoldin_2 PF01920.15 gi|564287975|ref|YP_008874166.1| - 3.2 7.5 15.1 0.79 9.5 2.8 2.4 1 1 1 2 2 2 0 Prefoldin subunit Ax_dynein_light PF10211.4 gi|564287975|ref|YP_008874166.1| - 3.3 7.5 18.0 5.2 6.8 3.9 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain NPV_P10 PF05531.7 gi|564287975|ref|YP_008874166.1| - 4.1 7.7 5.6 38 4.6 3.4 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein UPF0242 PF06785.6 gi|564287975|ref|YP_008874166.1| - 4.8 5.7 8.1 5.7 5.5 5.6 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Mnd1 PF03962.10 gi|564287975|ref|YP_008874166.1| - 5.5 6.6 16.0 8 6.0 10.8 1.4 1 1 0 1 1 1 0 Mnd1 family Macoilin PF09726.4 gi|564287975|ref|YP_008874166.1| - 6.3 4.9 12.2 7.5 4.7 8.5 1.0 1 0 0 1 1 1 0 Transmembrane protein HAUS6_N PF14661.1 gi|564287975|ref|YP_008874166.1| - 8.2 5.6 14.3 0.66 9.2 4.7 1.8 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Phage_integrase PF00589.17 gi|564287976|ref|YP_008874167.1| - 1.5e-08 34.4 0.0 2.7e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|564287976|ref|YP_008874167.1| - 0.13 12.6 0.0 1.2 9.5 0.0 2.4 2 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain DUF2937 PF11157.3 gi|564287976|ref|YP_008874167.1| - 2.2 7.5 5.6 8.5 5.6 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2937) CbiA PF01656.18 gi|564287977|ref|YP_008874168.1| - 1.6e-25 89.7 0.0 2.6e-25 88.9 0.0 1.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|564287977|ref|YP_008874168.1| - 1.7e-10 41.0 0.0 1.4e-08 34.8 0.0 2.8 4 0 0 4 4 4 1 AAA domain MipZ PF09140.6 gi|564287977|ref|YP_008874168.1| - 4.5e-07 29.2 0.0 7.7e-05 21.8 0.0 2.5 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|564287977|ref|YP_008874168.1| - 1.2e-06 27.8 0.1 9.3e-06 24.8 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|564287977|ref|YP_008874168.1| - 0.00018 20.9 0.0 0.0003 20.2 0.0 1.3 1 1 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|564287977|ref|YP_008874168.1| - 0.00074 18.7 0.0 0.0013 17.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.1 gi|564287977|ref|YP_008874168.1| - 0.0072 16.3 0.1 0.015 15.2 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain NHase_alpha PF02979.11 gi|564287977|ref|YP_008874168.1| - 0.0089 15.3 0.0 0.017 14.3 0.0 1.5 1 0 0 1 1 1 1 Nitrile hydratase, alpha chain AAA_25 PF13481.1 gi|564287977|ref|YP_008874168.1| - 0.02 14.2 0.1 0.06 12.7 0.1 1.9 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|564287977|ref|YP_008874168.1| - 0.038 13.4 0.1 0.092 12.1 0.1 2.1 1 1 0 1 1 1 0 AAA-like domain DUF2999 PF11212.3 gi|564287978|ref|YP_008874169.1| - 0.065 13.2 0.0 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2999) IclR PF01614.13 gi|564287979|ref|YP_008874171.1| - 5.8e-36 123.0 0.1 1.5e-35 121.7 0.1 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|564287979|ref|YP_008874171.1| - 5.7e-08 32.2 0.0 1.3e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|564287979|ref|YP_008874171.1| - 1.8e-06 27.2 0.0 3.6e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|564287979|ref|YP_008874171.1| - 2.4e-05 24.0 0.0 0.0002 21.0 0.0 2.3 2 1 1 3 3 3 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|564287979|ref|YP_008874171.1| - 0.00011 21.8 0.0 0.00043 19.8 0.0 2.0 1 1 1 2 2 2 1 MarR family HTH_20 PF12840.2 gi|564287979|ref|YP_008874171.1| - 0.00028 20.6 0.1 0.00084 19.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|564287979|ref|YP_008874171.1| - 0.0019 17.7 0.0 0.0045 16.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|564287979|ref|YP_008874171.1| - 0.0028 17.2 0.1 0.01 15.4 0.0 2.0 2 0 0 2 2 2 1 HTH domain Tn7_Tnp_TnsA_C PF08721.6 gi|564287979|ref|YP_008874171.1| - 0.0034 17.3 0.0 0.0093 15.9 0.0 1.7 1 0 0 1 1 1 1 TnsA endonuclease C terminal MarR PF01047.17 gi|564287979|ref|YP_008874171.1| - 0.004 16.8 0.0 0.027 14.1 0.0 2.3 1 1 1 2 2 2 1 MarR family HTH_27 PF13463.1 gi|564287979|ref|YP_008874171.1| - 0.0087 16.3 1.2 0.093 13.0 0.0 3.1 3 1 1 4 4 4 1 Winged helix DNA-binding domain TAF8_C PF10406.4 gi|564287979|ref|YP_008874171.1| - 0.035 14.1 0.5 0.37 10.8 0.2 2.5 2 0 0 2 2 2 0 Transcription factor TFIID complex subunit 8 C-term APC2 PF08672.6 gi|564287979|ref|YP_008874171.1| - 0.038 14.2 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 TrmB PF01978.14 gi|564287979|ref|YP_008874171.1| - 0.063 13.0 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|564287979|ref|YP_008874171.1| - 0.081 12.4 0.1 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.7 gi|564287979|ref|YP_008874171.1| - 0.12 12.0 0.0 0.8 9.3 0.0 2.4 2 1 1 3 3 3 0 HTH DNA binding domain Rrf2 PF02082.15 gi|564287979|ref|YP_008874171.1| - 0.12 12.5 0.0 0.4 10.8 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator DUF848 PF05852.6 gi|564287979|ref|YP_008874171.1| - 0.18 11.6 1.8 1.3 8.8 0.0 2.5 3 0 0 3 3 2 0 Gammaherpesvirus protein of unknown function (DUF848) Na_H_antiporter PF03553.9 gi|564287980|ref|YP_008874172.1| - 2.9e-51 174.3 46.8 4.9e-51 173.5 18.2 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family PAS_9 PF13426.1 gi|564287982|ref|YP_008874174.1| - 0.0004 20.7 0.0 0.00081 19.7 0.0 1.5 2 0 0 2 2 2 1 PAS domain Hanta_nucleocap PF00846.13 gi|564287982|ref|YP_008874174.1| - 0.082 11.5 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Hantavirus nucleocapsid protein DUF3592 PF12158.3 gi|564287983|ref|YP_008874175.1| - 7.1e-21 74.5 5.3 2.5e-20 72.7 3.1 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3592) EmrE PF13536.1 gi|564287983|ref|YP_008874175.1| - 0.051 13.7 6.6 1.5 9.0 0.1 3.5 3 0 0 3 3 3 0 Multidrug resistance efflux transporter Hydantoinase_B PF02538.9 gi|564287984|ref|YP_008874176.1| - 2.9e-152 507.5 0.0 3.4e-152 507.3 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF1702 PF08012.6 gi|564287984|ref|YP_008874176.1| - 0.14 10.7 0.3 4.7 5.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1702) Hydantoinase_A PF01968.13 gi|564287985|ref|YP_008874177.1| - 5.2e-90 301.4 12.8 5.2e-89 298.1 4.4 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|564287985|ref|YP_008874177.1| - 7.9e-51 172.0 2.3 5.4e-50 169.3 0.2 2.4 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|564287985|ref|YP_008874177.1| - 0.0014 17.0 5.2 0.0062 14.9 0.2 2.5 3 0 0 3 3 3 2 MutL protein Nramp PF01566.13 gi|564287986|ref|YP_008874178.1| - 1e-98 330.4 24.8 1.2e-98 330.1 17.2 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein RHH_1 PF01402.16 gi|564287987|ref|YP_008874179.1| - 1.3e-11 43.8 0.1 3.6e-11 42.4 0.1 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|564287987|ref|YP_008874179.1| - 5.1e-05 22.9 0.2 0.00015 21.4 0.2 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix domain RepB-RCR_reg PF10723.4 gi|564287987|ref|YP_008874179.1| - 0.0057 16.3 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Replication regulatory protein RepB TraY PF05509.6 gi|564287987|ref|YP_008874179.1| - 0.0093 15.7 0.3 0.047 13.4 0.1 2.0 2 0 0 2 2 2 1 TraY domain PUB PF09409.5 gi|564287987|ref|YP_008874179.1| - 0.016 14.9 0.0 0.04 13.6 0.0 1.6 1 0 0 1 1 1 0 PUB domain ELFV_dehydrog PF00208.16 gi|564287988|ref|YP_008874180.1| - 3.1e-72 243.1 0.1 4e-72 242.7 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|564287988|ref|YP_008874180.1| - 1.2e-48 163.9 0.0 1.9e-48 163.3 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|564287988|ref|YP_008874180.1| - 0.00069 18.8 0.1 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.14 gi|564287988|ref|YP_008874180.1| - 0.0028 16.3 0.0 0.0039 15.8 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase AlaDh_PNT_C PF01262.16 gi|564287988|ref|YP_008874180.1| - 0.0062 16.1 0.5 0.015 14.8 0.0 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|564287988|ref|YP_008874180.1| - 0.04 13.2 0.1 0.063 12.6 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Malic_M PF03949.10 gi|564287988|ref|YP_008874180.1| - 0.095 12.2 0.1 0.14 11.7 0.1 1.2 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain GAF_2 PF13185.1 gi|564287989|ref|YP_008874181.1| - 5.7e-24 85.2 1.7 4.1e-16 59.8 0.0 3.0 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|564287989|ref|YP_008874181.1| - 1.5e-17 62.9 0.0 5.2e-17 61.1 0.0 2.1 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|564287989|ref|YP_008874181.1| - 1.1e-16 61.1 0.2 2.8e-07 30.6 0.1 2.8 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|564287989|ref|YP_008874181.1| - 4.4e-14 52.7 0.8 2.3e-06 27.9 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|564287989|ref|YP_008874181.1| - 1.8e-13 50.4 4.3 2.8e-09 36.9 0.5 3.7 3 0 0 3 3 3 2 PAS fold GAF PF01590.21 gi|564287989|ref|YP_008874181.1| - 1.6e-10 41.3 3.2 4.6e-06 26.8 0.0 3.5 3 0 0 3 3 3 2 GAF domain Response_reg PF00072.19 gi|564287989|ref|YP_008874181.1| - 2.1e-10 40.5 0.0 1.4e-09 37.8 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.19 gi|564287989|ref|YP_008874181.1| - 7.8e-06 25.6 5.6 0.04 13.6 0.1 3.7 4 0 0 4 4 4 2 PAS fold HTH_22 PF13309.1 gi|564287989|ref|YP_008874181.1| - 0.07 12.9 0.1 0.52 10.1 0.0 2.6 2 0 0 2 2 2 0 HTH domain PAS_7 PF12860.2 gi|564287989|ref|YP_008874181.1| - 0.098 12.6 7.2 0.52 10.3 0.0 4.1 4 2 0 4 4 4 0 PAS fold zf-C2HC5 PF06221.8 gi|564287990|ref|YP_008874182.1| - 0.0007 19.2 0.3 0.00076 19.1 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.6 gi|564287990|ref|YP_008874182.1| - 0.0047 16.7 1.1 0.0053 16.5 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) C1_1 PF00130.17 gi|564287990|ref|YP_008874182.1| - 0.022 14.5 0.7 0.025 14.3 0.5 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.2 gi|564287990|ref|YP_008874182.1| - 0.026 14.3 1.6 0.029 14.2 1.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon XPA_N PF01286.13 gi|564287990|ref|YP_008874182.1| - 0.031 13.9 1.3 3.8 7.2 0.2 2.1 2 0 0 2 2 2 0 XPA protein N-terminal Zn-ribbon_8 PF09723.5 gi|564287990|ref|YP_008874182.1| - 0.035 14.0 4.2 0.17 11.8 2.5 1.9 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|564287990|ref|YP_008874182.1| - 0.04 13.6 1.2 0.041 13.5 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|564287990|ref|YP_008874182.1| - 0.049 13.4 4.8 1 9.1 2.5 2.2 1 1 1 2 2 2 0 YhfH-like protein NOB1_Zn_bind PF08772.6 gi|564287990|ref|YP_008874182.1| - 0.071 12.9 0.8 0.083 12.7 0.6 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like RNA_pol_N PF01194.12 gi|564287990|ref|YP_008874182.1| - 0.094 12.7 1.7 0.19 11.8 1.2 1.5 1 1 1 2 2 2 0 RNA polymerases N / 8 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|564287990|ref|YP_008874182.1| - 0.11 12.1 0.7 0.14 11.8 0.5 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|564287990|ref|YP_008874182.1| - 0.14 11.8 1.3 0.18 11.5 0.9 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|564287990|ref|YP_008874182.1| - 0.18 11.8 0.3 0.18 11.8 0.2 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|564287990|ref|YP_008874182.1| - 0.23 10.9 2.6 0.4 10.1 0.3 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain Prim_Zn_Ribbon PF08273.7 gi|564287990|ref|YP_008874182.1| - 0.39 10.8 3.4 2 8.5 0.2 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase ELFV_dehydrog PF00208.16 gi|564287991|ref|YP_008874183.1| - 1.7e-70 237.3 0.1 2.1e-70 237.0 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|564287991|ref|YP_008874183.1| - 2.6e-52 175.8 0.0 4.2e-52 175.1 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|564287991|ref|YP_008874183.1| - 0.0055 15.8 0.0 0.0094 15.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|564287991|ref|YP_008874183.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|564287991|ref|YP_008874183.1| - 0.11 12.0 1.1 0.25 10.8 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|564287991|ref|YP_008874183.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PAS_4 PF08448.5 gi|564287992|ref|YP_008874184.1| - 1.3e-52 176.4 15.5 3.3e-14 52.8 0.0 7.0 5 3 0 5 5 5 5 PAS fold PAS_9 PF13426.1 gi|564287992|ref|YP_008874184.1| - 3.5e-51 171.9 5.2 7.1e-16 58.4 0.0 5.7 6 0 0 6 6 5 5 PAS domain PAS PF00989.19 gi|564287992|ref|YP_008874184.1| - 7.3e-37 125.6 4.4 4.4e-17 61.9 0.0 5.6 5 1 0 5 5 5 4 PAS fold PAS_8 PF13188.1 gi|564287992|ref|YP_008874184.1| - 3e-21 74.4 1.9 4.8e-07 29.3 0.0 5.9 6 0 0 6 6 6 4 PAS domain HATPase_c PF02518.21 gi|564287992|ref|YP_008874184.1| - 2.1e-18 66.0 0.1 4.8e-18 64.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|564287992|ref|YP_008874184.1| - 3.1e-18 65.6 1.1 1.6e-08 34.5 0.1 3.9 5 0 0 5 5 4 2 PAS fold GAF_3 PF13492.1 gi|564287992|ref|YP_008874184.1| - 7.3e-18 64.9 2.2 1.6e-08 34.7 0.1 3.5 3 0 0 3 3 3 2 GAF domain GAF_2 PF13185.1 gi|564287992|ref|YP_008874184.1| - 3e-14 53.7 4.9 3.1e-06 27.7 0.7 3.9 3 0 0 3 3 3 2 GAF domain Response_reg PF00072.19 gi|564287992|ref|YP_008874184.1| - 1.3e-13 50.8 0.1 5.1e-13 49.0 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|564287992|ref|YP_008874184.1| - 7e-13 48.3 0.5 7e-13 48.3 0.3 3.7 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|564287992|ref|YP_008874184.1| - 1.4e-06 28.5 0.2 0.0024 18.0 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS_10 PF13596.1 gi|564287992|ref|YP_008874184.1| - 0.00048 20.3 0.0 0.092 13.0 0.0 3.6 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|564287992|ref|YP_008874184.1| - 0.0011 19.0 0.8 8.3 6.4 0.0 4.9 4 1 0 4 4 4 1 PAS fold HATPase_c_3 PF13589.1 gi|564287992|ref|YP_008874184.1| - 0.026 14.1 0.0 0.074 12.7 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|564287993|ref|YP_008874185.1| - 1.3e-22 79.9 0.0 3.6e-22 78.4 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|564287993|ref|YP_008874185.1| - 1e-19 70.2 0.8 2.3e-19 69.1 0.1 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|564287993|ref|YP_008874185.1| - 3.5e-16 59.2 0.0 7.2e-16 58.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|564287993|ref|YP_008874185.1| - 5.1e-16 59.4 1.0 2.2e-14 54.1 0.0 3.0 3 0 0 3 3 3 1 GAF domain HisKA PF00512.20 gi|564287993|ref|YP_008874185.1| - 1.7e-14 53.5 5.2 2e-14 53.3 1.0 3.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|564287993|ref|YP_008874185.1| - 1.4e-13 51.1 0.1 5.1e-13 49.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|564287993|ref|YP_008874185.1| - 3.6e-11 43.4 0.9 7.9e-10 39.0 0.0 2.8 3 0 0 3 3 3 1 GAF domain PAS PF00989.19 gi|564287993|ref|YP_008874185.1| - 2.8e-10 39.9 0.0 8.7e-10 38.3 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|564287993|ref|YP_008874185.1| - 8.8e-08 32.3 0.0 2.9e-07 30.6 0.0 2.0 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|564287993|ref|YP_008874185.1| - 6e-06 26.2 0.0 2.5e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|564287993|ref|YP_008874185.1| - 7.4e-05 22.4 0.0 0.00028 20.6 0.0 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|564287993|ref|YP_008874185.1| - 0.0011 18.6 0.0 0.0028 17.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Abhydrolase_6 PF12697.2 gi|564287994|ref|YP_008874186.1| - 5.1e-30 105.0 1.6 5.7e-30 104.8 1.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|564287994|ref|YP_008874186.1| - 1.3e-10 41.2 0.0 1.4e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|564287994|ref|YP_008874186.1| - 6.3e-05 22.6 0.2 0.00013 21.6 0.1 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|564287994|ref|YP_008874186.1| - 0.022 14.3 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Peripla_BP_2 PF01497.13 gi|564288292|ref|YP_008874187.1| - 2.5e-13 49.7 0.0 3.8e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein IMPDH PF00478.20 gi|564287995|ref|YP_008874188.1| - 2.6e-111 371.9 4.8 3.6e-111 371.4 3.3 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|564287995|ref|YP_008874188.1| - 2.5e-10 40.0 14.7 3.7e-08 32.8 10.2 2.2 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|564287995|ref|YP_008874188.1| - 1.4e-06 27.4 8.0 2.8e-06 26.4 5.6 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|564287995|ref|YP_008874188.1| - 6.9e-06 25.4 1.1 0.00027 20.2 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|564287995|ref|YP_008874188.1| - 0.00073 18.5 6.1 0.0008 18.4 1.6 2.6 3 0 0 3 3 3 1 Conserved region in glutamate synthase TMP-TENI PF02581.12 gi|564287995|ref|YP_008874188.1| - 0.0062 15.6 5.5 0.012 14.7 3.6 1.7 1 1 1 2 2 2 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|564287995|ref|YP_008874188.1| - 0.011 14.7 0.7 0.011 14.7 0.5 1.8 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|564287995|ref|YP_008874188.1| - 0.052 12.8 0.3 0.052 12.8 0.2 2.2 2 1 0 2 2 2 0 PcrB family Aldolase PF01081.14 gi|564287995|ref|YP_008874188.1| - 0.058 12.5 3.1 0.13 11.4 0.7 2.2 1 1 1 2 2 2 0 KDPG and KHG aldolase DUF934 PF06073.7 gi|564287996|ref|YP_008874189.1| - 0.0098 15.5 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF934) DUF969 PF06149.7 gi|564287996|ref|YP_008874189.1| - 0.026 13.7 0.1 0.03 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF969) Molybdopterin PF00384.17 gi|564287997|ref|YP_008874190.1| - 1.3e-80 271.2 0.0 1.6e-80 270.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|564287997|ref|YP_008874190.1| - 2.6e-32 110.9 0.0 5.4e-32 109.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|564287997|ref|YP_008874190.1| - 5.6e-07 29.2 1.9 1.8e-06 27.6 1.3 1.9 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TPP_enzyme_M PF00205.17 gi|564287997|ref|YP_008874190.1| - 0.018 14.7 0.5 16 5.2 0.0 3.5 4 0 0 4 4 4 0 Thiamine pyrophosphate enzyme, central domain NosD PF05048.8 gi|564287998|ref|YP_008874191.1| - 1.5e-26 93.0 2.9 5e-26 91.3 0.9 2.0 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|564287998|ref|YP_008874191.1| - 2.7e-13 49.9 16.6 1.5e-11 44.2 7.1 3.2 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.7 gi|564287998|ref|YP_008874191.1| - 1e-12 47.9 0.0 1.8e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.2 gi|564287998|ref|YP_008874191.1| - 1.6e-09 38.2 3.8 1.6e-09 38.2 2.6 1.8 1 1 1 2 2 2 1 Pectate lyase superfamily protein DUF1565 PF07602.6 gi|564287998|ref|YP_008874191.1| - 9.9e-05 21.5 14.2 0.0016 17.6 1.2 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) ABC_tran PF00005.22 gi|564287999|ref|YP_008874192.1| - 5.5e-28 97.9 0.0 7.4e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|564287999|ref|YP_008874192.1| - 2.7e-18 66.9 0.0 8.7e-10 39.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|564287999|ref|YP_008874192.1| - 2.4e-05 23.6 0.0 0.041 13.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|564287999|ref|YP_008874192.1| - 0.00026 20.4 0.1 0.00046 19.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|564287999|ref|YP_008874192.1| - 0.0013 19.0 0.0 0.0018 18.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|564287999|ref|YP_008874192.1| - 0.0058 16.5 0.0 0.013 15.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.1 gi|564287999|ref|YP_008874192.1| - 0.0065 15.0 0.0 0.19 10.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|564287999|ref|YP_008874192.1| - 0.014 14.5 0.0 0.021 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Adeno_IVa2 PF02456.10 gi|564287999|ref|YP_008874192.1| - 0.033 12.8 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|564287999|ref|YP_008874192.1| - 0.085 12.2 0.0 0.27 10.6 0.1 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|564287999|ref|YP_008874192.1| - 0.091 13.5 0.2 0.25 12.1 0.2 1.9 2 1 0 2 2 2 0 AAA domain MobB PF03205.9 gi|564287999|ref|YP_008874192.1| - 0.097 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|564287999|ref|YP_008874192.1| - 0.12 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|564287999|ref|YP_008874192.1| - 0.13 11.6 0.1 0.45 9.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|564287999|ref|YP_008874192.1| - 0.13 11.6 0.5 0.27 10.6 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_2 PF12679.2 gi|564288000|ref|YP_008874193.1| - 1.6e-06 27.2 18.3 2.2e-06 26.7 10.8 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein HrcA_DNA-bdg PF03444.10 gi|564288000|ref|YP_008874193.1| - 0.17 11.3 0.2 0.37 10.2 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ABC2_membrane PF01061.19 gi|564288000|ref|YP_008874193.1| - 0.3 10.2 18.5 0.0058 15.8 5.7 2.1 2 0 0 2 2 2 0 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|564288000|ref|YP_008874193.1| - 1.4 7.8 18.8 0.38 9.7 10.2 1.7 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|564288000|ref|YP_008874193.1| - 6.1 5.9 19.0 14 4.7 13.0 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein HTH_20 PF12840.2 gi|564288001|ref|YP_008874194.1| - 1.4e-16 60.0 2.0 1.5e-09 37.5 0.4 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|564288001|ref|YP_008874194.1| - 1.2e-11 44.0 0.1 8.6e-07 28.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|564288001|ref|YP_008874194.1| - 3.2e-11 42.4 0.0 6.4e-07 28.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|564288001|ref|YP_008874194.1| - 3.1e-09 36.4 0.0 1.4e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|564288001|ref|YP_008874194.1| - 1.8e-08 33.8 1.7 1.9e-05 24.2 0.4 2.9 2 1 0 2 2 2 2 MarR family HTH_34 PF13601.1 gi|564288001|ref|YP_008874194.1| - 1e-06 28.6 0.0 0.019 14.9 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|564288001|ref|YP_008874194.1| - 1.6e-06 27.6 0.1 2.3e-05 23.9 0.1 2.2 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.15 gi|564288001|ref|YP_008874194.1| - 5.8e-05 23.1 0.2 0.0054 16.8 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator MarR PF01047.17 gi|564288001|ref|YP_008874194.1| - 8.3e-05 22.2 0.0 0.00044 19.9 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.7 gi|564288001|ref|YP_008874194.1| - 0.00011 21.7 0.0 0.24 11.0 0.0 2.8 2 1 0 2 2 2 2 HTH DNA binding domain HTH_IclR PF09339.5 gi|564288001|ref|YP_008874194.1| - 0.00012 21.6 0.8 0.0042 16.6 0.4 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|564288001|ref|YP_008874194.1| - 0.00046 20.4 0.3 0.021 15.1 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|564288001|ref|YP_008874194.1| - 0.001 18.9 0.0 0.21 11.5 0.0 2.4 2 1 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|564288001|ref|YP_008874194.1| - 0.0041 16.8 0.0 0.0082 15.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|564288001|ref|YP_008874194.1| - 0.0054 16.2 0.0 0.021 14.3 0.0 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_CodY PF08222.6 gi|564288001|ref|YP_008874194.1| - 0.0061 15.8 0.0 0.024 13.9 0.0 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain FaeA PF04703.7 gi|564288001|ref|YP_008874194.1| - 0.0082 16.2 0.1 1.6 8.9 0.0 2.2 2 0 0 2 2 2 1 FaeA-like protein DUF2513 PF10711.4 gi|564288001|ref|YP_008874194.1| - 0.011 15.7 0.0 0.21 11.7 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) HTH_23 PF13384.1 gi|564288001|ref|YP_008874194.1| - 0.035 13.7 0.2 0.15 11.7 0.1 2.2 1 1 1 2 2 2 0 Homeodomain-like domain RPA_C PF08784.6 gi|564288001|ref|YP_008874194.1| - 0.035 14.5 0.0 4 7.8 0.0 2.2 1 1 1 2 2 2 0 Replication protein A C terminal Phage_CI_repr PF07022.8 gi|564288001|ref|YP_008874194.1| - 0.051 13.6 0.1 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|564288001|ref|YP_008874194.1| - 0.066 12.7 0.3 0.41 10.2 0.2 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.4 gi|564288001|ref|YP_008874194.1| - 0.1 12.5 0.0 0.52 10.2 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) NosL PF05573.7 gi|564288002|ref|YP_008874195.1| - 7.1e-43 145.8 0.0 8.7e-43 145.5 0.0 1.1 1 0 0 1 1 1 1 NosL RRM_1 PF00076.17 gi|564288002|ref|YP_008874195.1| - 0.0092 15.5 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) zf-FCS PF06467.9 gi|564288002|ref|YP_008874195.1| - 0.78 9.4 3.7 2.7 7.7 2.6 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif COX15-CtaA PF02628.10 gi|564288003|ref|YP_008874196.1| - 0.022 13.6 8.7 0.024 13.5 6.0 1.0 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein LysE PF01810.13 gi|564288003|ref|YP_008874196.1| - 0.15 11.3 4.4 0.17 11.1 2.8 1.4 1 1 0 1 1 1 0 LysE type translocator NADHdeh_related PF10125.4 gi|564288003|ref|YP_008874196.1| - 0.17 11.0 3.0 0.1 11.7 0.7 1.6 1 1 1 2 2 2 0 NADH dehydrogenase I, subunit N related protein 7TMR-DISM_7TM PF07695.6 gi|564288003|ref|YP_008874196.1| - 0.26 10.9 7.3 0.29 10.7 5.1 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling MARVEL PF01284.18 gi|564288003|ref|YP_008874196.1| - 1 9.1 5.8 4.1 7.2 4.0 1.8 1 1 0 1 1 1 0 Membrane-associating domain DoxX_2 PF13564.1 gi|564288003|ref|YP_008874196.1| - 1.4 8.9 9.8 5 7.1 5.6 2.1 1 1 0 1 1 1 0 DoxX-like family DUF1772 PF08592.6 gi|564288003|ref|YP_008874196.1| - 1.5 8.5 5.9 0.76 9.5 2.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Usp PF00582.21 gi|564288004|ref|YP_008874197.1| - 3.2e-30 105.1 2.0 3.5e-30 105.0 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|564288004|ref|YP_008874197.1| - 0.003 17.6 0.1 0.0089 16.1 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain DNA_photolyase PF00875.13 gi|564288004|ref|YP_008874197.1| - 0.0038 16.9 0.0 0.005 16.6 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase Histidinol_dh PF00815.15 gi|564288004|ref|YP_008874197.1| - 0.075 11.6 0.6 0.091 11.3 0.4 1.2 1 0 0 1 1 1 0 Histidinol dehydrogenase Pyridox_ox_2 PF12900.2 gi|564288005|ref|YP_008874198.1| - 2.6e-15 56.4 0.0 3e-15 56.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|564288005|ref|YP_008874198.1| - 0.00038 20.4 0.0 0.00051 20.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF2267 PF10025.4 gi|564288006|ref|YP_008874199.1| - 1.7e-35 121.8 0.5 2.1e-35 121.5 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Usp PF00582.21 gi|564288007|ref|YP_008874200.1| - 1.1e-64 216.8 4.8 1.4e-31 109.5 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.5 gi|564288007|ref|YP_008874200.1| - 0.001 18.7 0.2 0.51 10.1 0.0 2.6 2 0 0 2 2 2 2 FR47-like protein AP_endonuc_2 PF01261.19 gi|564288007|ref|YP_008874200.1| - 0.018 14.3 3.1 0.38 10.0 0.1 2.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel vATP-synt_AC39 PF01992.11 gi|564288007|ref|YP_008874200.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit Pyridox_ox_2 PF12900.2 gi|564288008|ref|YP_008874201.1| - 4.4e-17 62.2 0.0 5.1e-17 62.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|564288008|ref|YP_008874201.1| - 0.00013 21.9 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase E1-E2_ATPase PF00122.15 gi|564288009|ref|YP_008874202.1| - 6.3e-76 254.4 2.3 3.6e-75 251.9 0.6 2.4 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|564288009|ref|YP_008874202.1| - 4.7e-39 133.7 1.0 1.3e-38 132.3 0.7 1.8 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|564288009|ref|YP_008874202.1| - 1.3e-36 127.0 5.6 2.9e-36 125.9 3.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|564288009|ref|YP_008874202.1| - 4.6e-21 74.5 0.0 1.3e-20 73.1 0.0 1.8 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|564288009|ref|YP_008874202.1| - 6.1e-17 62.4 0.1 1.2e-16 61.4 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|564288009|ref|YP_008874202.1| - 6e-14 51.2 0.0 1.2e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|564288009|ref|YP_008874202.1| - 7e-06 25.8 0.8 9.7e-05 22.0 0.4 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_24 PF13412.1 gi|564288009|ref|YP_008874202.1| - 0.19 11.1 0.0 12 5.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Pyr_redox_2 PF07992.9 gi|564288010|ref|YP_008874203.1| - 1.3e-30 106.8 7.3 3.4e-15 56.4 0.0 3.6 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|564288010|ref|YP_008874203.1| - 6.7e-26 90.5 2.0 2.4e-20 72.6 0.3 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|564288010|ref|YP_008874203.1| - 1e-12 48.0 0.0 4.2e-12 46.0 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|564288010|ref|YP_008874203.1| - 7.9e-10 38.1 6.5 0.011 14.7 0.4 4.2 4 0 0 4 4 4 4 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|564288010|ref|YP_008874203.1| - 1.1e-05 25.4 2.2 0.026 14.5 0.0 3.5 3 1 0 4 4 4 2 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|564288010|ref|YP_008874203.1| - 1.4e-05 25.2 1.0 0.035 14.1 0.1 3.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|564288010|ref|YP_008874203.1| - 1.7e-05 23.4 0.1 0.15 10.5 0.0 3.6 3 1 0 3 3 3 2 HI0933-like protein UDPG_MGDP_dh_N PF03721.9 gi|564288010|ref|YP_008874203.1| - 0.0058 16.0 0.0 0.48 9.7 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|564288010|ref|YP_008874203.1| - 0.025 14.2 0.1 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|564288010|ref|YP_008874203.1| - 0.22 11.3 2.1 57 3.4 0.1 3.7 3 1 1 4 4 4 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|564288010|ref|YP_008874203.1| - 0.36 9.8 4.5 3.8 6.4 0.1 2.9 2 2 0 2 2 2 0 FAD binding domain TauE PF01925.14 gi|564288011|ref|YP_008874204.1| - 2.3e-21 76.3 39.2 2.7e-21 76.1 27.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DrsE PF02635.10 gi|564288012|ref|YP_008874205.1| - 1.1e-06 28.6 0.0 1.3e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Thioredoxin PF00085.15 gi|564288013|ref|YP_008874206.1| - 2.9e-27 94.3 0.0 3.5e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|564288013|ref|YP_008874206.1| - 1.1e-10 41.7 0.1 8.6e-10 38.8 0.1 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|564288013|ref|YP_008874206.1| - 4.2e-06 26.7 0.0 0.0075 16.3 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like DSBA PF01323.15 gi|564288013|ref|YP_008874206.1| - 1.9e-05 24.2 0.3 3.2e-05 23.5 0.0 1.5 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.1 gi|564288013|ref|YP_008874206.1| - 2.3e-05 24.3 0.0 3.7e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|564288013|ref|YP_008874206.1| - 2.5e-05 23.9 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.1 gi|564288013|ref|YP_008874206.1| - 0.00016 21.2 0.0 0.00022 20.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_9 PF14595.1 gi|564288013|ref|YP_008874206.1| - 0.00018 21.0 0.0 0.00022 20.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|564288013|ref|YP_008874206.1| - 0.0013 18.9 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|564288013|ref|YP_008874206.1| - 0.0023 17.5 0.1 0.22 11.1 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA family HyaE PF07449.6 gi|564288013|ref|YP_008874206.1| - 0.0046 16.8 0.0 0.008 16.0 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.5 gi|564288013|ref|YP_008874206.1| - 0.005 16.4 0.1 0.77 9.2 0.1 2.0 1 1 1 2 2 2 2 Redoxin Thioredoxin_4 PF13462.1 gi|564288013|ref|YP_008874206.1| - 0.011 15.6 0.0 0.058 13.4 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin Glutaredoxin PF00462.19 gi|564288013|ref|YP_008874206.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_5 PF13743.1 gi|564288013|ref|YP_008874206.1| - 0.014 15.0 0.0 0.031 13.8 0.0 1.6 1 1 1 2 2 2 0 Thioredoxin TrbC_Ftype PF09673.5 gi|564288013|ref|YP_008874206.1| - 0.05 13.1 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein TrmB PF01978.14 gi|564288014|ref|YP_008874207.1| - 1.5e-17 63.0 0.0 2.1e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|564288014|ref|YP_008874207.1| - 7.9e-08 31.7 0.1 1.6e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|564288014|ref|YP_008874207.1| - 6.5e-07 28.9 0.0 1.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|564288014|ref|YP_008874207.1| - 6.9e-06 25.6 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|564288014|ref|YP_008874207.1| - 5.3e-05 22.7 0.0 0.00015 21.3 0.0 1.7 2 0 0 2 2 2 1 MarR family Penicillinase_R PF03965.11 gi|564288014|ref|YP_008874207.1| - 5.3e-05 23.2 0.0 6.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|564288014|ref|YP_008874207.1| - 0.00012 21.7 0.1 0.00026 20.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|564288014|ref|YP_008874207.1| - 0.00097 18.7 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_24 PF13412.1 gi|564288014|ref|YP_008874207.1| - 0.001 18.4 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|564288014|ref|YP_008874207.1| - 0.013 15.1 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|564288014|ref|YP_008874207.1| - 0.014 14.8 0.1 0.031 13.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|564288014|ref|YP_008874207.1| - 0.016 15.5 0.0 0.029 14.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|564288014|ref|YP_008874207.1| - 0.021 14.9 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.1 gi|564288014|ref|YP_008874207.1| - 0.022 14.5 0.0 0.051 13.3 0.0 1.7 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain UMPH-1 PF05822.7 gi|564288014|ref|YP_008874207.1| - 0.023 14.0 0.2 0.038 13.3 0.1 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) DUF387 PF04079.11 gi|564288014|ref|YP_008874207.1| - 0.028 13.7 0.4 2.6 7.3 0.0 2.4 1 1 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Sigma54_DBD PF04552.8 gi|564288014|ref|YP_008874207.1| - 0.029 13.8 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain HTH_38 PF13936.1 gi|564288014|ref|YP_008874207.1| - 0.039 13.5 0.0 0.1 12.1 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|564288014|ref|YP_008874207.1| - 0.062 13.4 0.0 0.13 12.3 0.0 1.5 2 0 0 2 2 1 0 Transcriptional regulator Dimerisation PF08100.6 gi|564288014|ref|YP_008874207.1| - 0.069 12.9 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Dimerisation domain Cupin_4 PF08007.7 gi|564288014|ref|YP_008874207.1| - 0.073 12.2 0.1 0.092 11.9 0.1 1.1 1 0 0 1 1 1 0 Cupin superfamily protein HTH_28 PF13518.1 gi|564288014|ref|YP_008874207.1| - 0.11 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|564288014|ref|YP_008874207.1| - 0.12 12.1 0.2 0.29 10.9 0.1 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Sulf_transp PF04143.9 gi|564288015|ref|YP_008874208.1| - 4.5e-10 39.3 10.0 4.5e-10 39.3 6.9 3.0 3 0 0 3 3 3 2 Sulphur transport DUF204 PF02659.10 gi|564288015|ref|YP_008874208.1| - 0.012 15.7 2.2 0.012 15.7 1.5 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF QCR10 PF09796.4 gi|564288015|ref|YP_008874208.1| - 0.53 9.9 2.6 3.6 7.3 1.8 2.4 1 1 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) DUF4341 PF14241.1 gi|564288016|ref|YP_008874209.1| - 2.7e-15 55.8 2.4 2.7e-15 55.8 1.7 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|564288016|ref|YP_008874209.1| - 2.3e-09 37.1 7.4 2.3e-09 37.1 5.1 2.9 3 1 0 3 3 3 2 Sulphur transport DUF4282 PF14110.1 gi|564288016|ref|YP_008874209.1| - 3 8.0 11.5 0.47 10.6 3.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) DUF1469 PF07332.6 gi|564288016|ref|YP_008874209.1| - 9.8 5.9 12.0 2.4 7.9 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) Lactamase_B PF00753.22 gi|564288017|ref|YP_008874210.1| - 8e-19 68.0 3.9 1.4e-18 67.2 2.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|564288017|ref|YP_008874210.1| - 3.7e-11 43.3 0.0 6.5e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|564288017|ref|YP_008874210.1| - 0.00027 20.5 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TusA PF01206.12 gi|564288018|ref|YP_008874211.1| - 7.8e-22 76.6 0.0 8.9e-22 76.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|564288018|ref|YP_008874211.1| - 0.011 15.3 0.0 0.035 13.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|564288019|ref|YP_008874212.1| - 1.8e-53 180.3 0.8 2.2e-53 180.0 0.6 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|564288019|ref|YP_008874212.1| - 8.6e-06 25.8 0.1 0.0001 22.3 0.0 2.2 1 1 0 1 1 1 1 DsrE/DsrF-like family Packaging_FI PF14000.1 gi|564288019|ref|YP_008874212.1| - 0.0011 19.1 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 DNA packaging protein FI DUF1641 PF07849.6 gi|564288020|ref|YP_008874213.1| - 3.6e-14 52.0 0.1 1e-13 50.6 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) KfrA_N PF11740.3 gi|564288020|ref|YP_008874213.1| - 0.69 10.3 11.0 2.9 8.3 1.3 2.7 1 1 2 3 3 3 0 Plasmid replication region DNA-binding N-term Pyr_redox_2 PF07992.9 gi|564288021|ref|YP_008874214.1| - 7.1e-13 48.8 0.0 1e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|564288021|ref|YP_008874214.1| - 0.0014 18.4 0.1 0.34 10.6 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|564288021|ref|YP_008874214.1| - 0.013 15.9 0.1 4.2 7.8 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.12 gi|564288022|ref|YP_008874215.1| - 4e-17 61.5 0.0 4.4e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Methyltransf_31 PF13847.1 gi|564288023|ref|YP_008874216.1| - 2.6e-14 53.0 0.0 2.9e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|564288023|ref|YP_008874216.1| - 2.7e-12 47.0 0.0 3.6e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|564288023|ref|YP_008874216.1| - 2.2e-10 41.1 0.1 3.1e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|564288023|ref|YP_008874216.1| - 1.2e-09 38.2 0.2 2e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|564288023|ref|YP_008874216.1| - 5.6e-09 35.4 0.0 6.7e-09 35.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|564288023|ref|YP_008874216.1| - 1.3e-08 34.4 0.0 1.8e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|564288023|ref|YP_008874216.1| - 3.6e-08 33.7 0.0 4.6e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|564288023|ref|YP_008874216.1| - 2.3e-07 31.1 0.0 3e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|564288023|ref|YP_008874216.1| - 8.5e-07 28.7 0.0 1.1e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|564288023|ref|YP_008874216.1| - 1e-06 28.5 0.0 1.3e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|564288023|ref|YP_008874216.1| - 0.00014 21.4 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|564288023|ref|YP_008874216.1| - 0.00015 20.9 0.1 0.0002 20.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.12 gi|564288023|ref|YP_008874216.1| - 0.00055 18.9 0.0 0.0021 17.0 0.0 1.7 2 0 0 2 2 2 1 Fibrillarin DUF938 PF06080.7 gi|564288023|ref|YP_008874216.1| - 0.0012 18.4 0.0 0.0021 17.6 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF938) FmrO PF07091.6 gi|564288023|ref|YP_008874216.1| - 0.0032 16.4 0.0 0.0042 16.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|564288023|ref|YP_008874216.1| - 0.0039 16.2 0.0 0.0051 15.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase RMMBL PF07521.7 gi|564288023|ref|YP_008874216.1| - 0.021 14.6 0.1 0.071 12.9 0.0 1.8 2 0 0 2 2 2 0 RNA-metabolising metallo-beta-lactamase Methyltransf_32 PF13679.1 gi|564288023|ref|YP_008874216.1| - 0.057 13.0 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|564288023|ref|YP_008874216.1| - 0.073 12.6 0.0 0.37 10.3 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.15 gi|564288023|ref|YP_008874216.1| - 0.09 11.8 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2892 PF11127.3 gi|564288024|ref|YP_008874217.1| - 7.7e-17 60.8 7.3 9.2e-17 60.6 5.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Chlorosome_CsmC PF11098.3 gi|564288024|ref|YP_008874217.1| - 0.11 12.2 5.0 0.12 12.1 3.5 1.0 1 0 0 1 1 1 0 Chlorosome envelope protein C MSP1b PF03429.8 gi|564288024|ref|YP_008874217.1| - 0.26 9.1 1.0 0.28 9.0 0.7 1.0 1 0 0 1 1 1 0 Major surface protein 1B IncA PF04156.9 gi|564288024|ref|YP_008874217.1| - 1.1 8.8 11.8 1.1 8.8 8.2 1.0 1 0 0 1 1 1 0 IncA protein TcdA_TcdB_pore PF12920.2 gi|564288024|ref|YP_008874217.1| - 2.3 6.0 6.6 2.5 5.9 4.6 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain PepSY_TM PF03929.11 gi|564288024|ref|YP_008874217.1| - 5.1 7.6 13.6 2.7 8.5 4.6 2.4 1 1 1 2 2 2 0 PepSY-associated TM helix Peptidase_M20 PF01546.23 gi|564288025|ref|YP_008874218.1| - 3.4e-37 127.7 0.1 4.5e-37 127.3 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|564288025|ref|YP_008874218.1| - 2.4e-19 69.1 0.0 4.6e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|564288025|ref|YP_008874218.1| - 1e-06 28.6 0.2 0.00015 21.5 0.1 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M42 PF05343.9 gi|564288025|ref|YP_008874218.1| - 0.0057 15.4 0.0 2.2 6.9 0.0 2.3 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase Thioredoxin PF00085.15 gi|564288026|ref|YP_008874219.1| - 9.4e-28 95.9 0.0 1.1e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|564288026|ref|YP_008874219.1| - 8.4e-12 45.2 0.1 8.5e-11 42.0 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|564288026|ref|YP_008874219.1| - 2.1e-06 27.6 0.0 3.3e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|564288026|ref|YP_008874219.1| - 5.5e-06 26.4 0.0 0.0029 17.7 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|564288026|ref|YP_008874219.1| - 2.1e-05 24.2 0.0 3.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|564288026|ref|YP_008874219.1| - 8.7e-05 22.0 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|564288026|ref|YP_008874219.1| - 8.8e-05 22.1 0.2 0.00019 21.0 0.0 1.6 1 1 1 2 2 2 1 DSBA-like thioredoxin domain HyaE PF07449.6 gi|564288026|ref|YP_008874219.1| - 0.00011 22.0 0.0 0.0002 21.1 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.9 gi|564288026|ref|YP_008874219.1| - 0.0002 21.5 0.0 0.00032 20.8 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|564288026|ref|YP_008874219.1| - 0.004 16.8 0.1 0.04 13.5 0.0 2.0 1 1 0 1 1 1 1 AhpC/TSA family TraF PF13728.1 gi|564288026|ref|YP_008874219.1| - 0.008 15.6 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 F plasmid transfer operon protein Redoxin PF08534.5 gi|564288026|ref|YP_008874219.1| - 0.01 15.3 0.1 0.099 12.1 0.1 2.0 1 1 1 2 2 2 0 Redoxin Glutaredoxin PF00462.19 gi|564288026|ref|YP_008874219.1| - 0.03 14.2 0.0 0.064 13.2 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin DUF953 PF06110.6 gi|564288026|ref|YP_008874219.1| - 0.046 13.1 0.4 0.52 9.7 0.3 2.1 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) Thioredoxin_5 PF13743.1 gi|564288026|ref|YP_008874219.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin DUF302 PF03625.9 gi|564288027|ref|YP_008874220.1| - 2.4e-18 65.4 0.0 3.6e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.7 gi|564288028|ref|YP_008874221.1| - 1.1e-15 57.8 0.0 1.9e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|564288028|ref|YP_008874221.1| - 7e-09 35.6 0.0 1.2e-08 34.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|564288028|ref|YP_008874221.1| - 9.6e-09 34.9 0.0 3.5e-08 33.1 0.0 1.7 1 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|564288028|ref|YP_008874221.1| - 2.8e-08 34.0 0.0 6.7e-08 32.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|564288028|ref|YP_008874221.1| - 2.1e-06 28.3 0.0 3.2e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|564288028|ref|YP_008874221.1| - 3.8e-06 26.1 0.0 5e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|564288028|ref|YP_008874221.1| - 3.3e-05 22.8 0.0 5.4e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase FtsJ PF01728.14 gi|564288028|ref|YP_008874221.1| - 0.00014 21.9 0.0 0.0002 21.4 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|564288028|ref|YP_008874221.1| - 0.0011 19.0 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|564288028|ref|YP_008874221.1| - 0.003 18.0 0.0 0.006 17.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|564288028|ref|YP_008874221.1| - 0.0033 16.4 0.0 0.0041 16.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|564288028|ref|YP_008874221.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase UreF PF01730.11 gi|564288029|ref|YP_008874222.1| - 2.7e-33 115.1 6.3 3.6e-33 114.7 4.3 1.1 1 0 0 1 1 1 1 UreF UreE_N PF02814.10 gi|564288030|ref|YP_008874223.1| - 4.1e-12 45.4 2.7 4.1e-12 45.4 1.9 1.9 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.7 gi|564288030|ref|YP_008874223.1| - 5.5e-06 26.3 2.6 1.1e-05 25.4 1.8 1.5 1 1 0 1 1 1 1 UreE urease accessory protein, C-terminal domain SAF PF08666.7 gi|564288030|ref|YP_008874223.1| - 0.074 13.4 0.3 0.16 12.4 0.1 1.6 2 0 0 2 2 2 0 SAF domain UreD PF01774.12 gi|564288031|ref|YP_008874224.1| - 1.5e-51 174.8 0.3 1.9e-51 174.5 0.2 1.1 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.14 gi|564288032|ref|YP_008874225.1| - 2e-34 118.6 0.0 2.3e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|564288032|ref|YP_008874225.1| - 3.9e-08 32.3 1.5 2.8e-07 29.6 1.0 1.9 1 1 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|564288032|ref|YP_008874225.1| - 3.3e-06 26.8 0.0 5.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|564288032|ref|YP_008874225.1| - 0.0018 18.5 0.0 0.0018 18.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|564288032|ref|YP_008874225.1| - 0.0028 17.9 0.1 0.0052 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|564288032|ref|YP_008874225.1| - 0.0078 15.8 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|564288032|ref|YP_008874225.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|564288032|ref|YP_008874225.1| - 0.015 16.1 0.2 0.026 15.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|564288032|ref|YP_008874225.1| - 0.018 14.0 0.1 0.03 13.2 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase KAP_NTPase PF07693.9 gi|564288032|ref|YP_008874225.1| - 0.021 13.8 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|564288032|ref|YP_008874225.1| - 0.027 14.1 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 NTPase AAA_19 PF13245.1 gi|564288032|ref|YP_008874225.1| - 0.059 13.1 0.2 0.11 12.2 0.2 1.4 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|564288032|ref|YP_008874225.1| - 0.062 12.9 0.1 0.098 12.3 0.1 1.3 1 0 0 1 1 1 0 NACHT domain LysR_substrate PF03466.15 gi|564288032|ref|YP_008874225.1| - 0.07 12.2 1.8 5.8 5.9 0.1 2.5 3 0 0 3 3 3 0 LysR substrate binding domain AAA_10 PF12846.2 gi|564288032|ref|YP_008874225.1| - 0.087 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|564288032|ref|YP_008874225.1| - 0.098 12.0 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Amidohydro_2 PF04909.9 gi|564288032|ref|YP_008874225.1| - 0.13 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase CoaE PF01121.15 gi|564288032|ref|YP_008874225.1| - 0.13 11.6 0.1 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Dephospho-CoA kinase TrwB_AAD_bind PF10412.4 gi|564288032|ref|YP_008874225.1| - 0.13 10.8 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain GTP_EFTU PF00009.22 gi|564288032|ref|YP_008874225.1| - 0.15 11.4 0.1 3.2 7.1 0.0 2.3 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Zeta_toxin PF06414.7 gi|564288032|ref|YP_008874225.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|564288032|ref|YP_008874225.1| - 0.23 11.7 0.4 0.35 11.1 0.3 1.2 1 0 0 1 1 1 0 AAA domain Urease_gamma PF00547.13 gi|564288033|ref|YP_008874226.1| - 5e-43 145.1 0.0 5.8e-43 144.9 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit Amidohydro_1 PF01979.15 gi|564288034|ref|YP_008874227.1| - 1.1e-54 186.2 3.2 1.6e-54 185.8 2.2 1.2 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|564288034|ref|YP_008874227.1| - 3.9e-49 165.8 1.6 9.2e-49 164.6 1.1 1.7 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_4 PF13147.1 gi|564288034|ref|YP_008874227.1| - 1.8e-06 28.1 1.1 0.0079 16.2 0.8 2.7 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|564288034|ref|YP_008874227.1| - 4.5e-06 26.3 3.2 1.2e-05 25.0 2.2 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|564288034|ref|YP_008874227.1| - 0.00018 20.8 7.6 0.00033 19.9 2.8 3.0 2 1 1 3 3 3 1 Amidohydrolase family Urease_beta PF00699.15 gi|564288035|ref|YP_008874228.1| - 3.2e-45 152.0 0.3 4.4e-45 151.6 0.2 1.2 1 0 0 1 1 1 1 Urease beta subunit Peripla_BP_6 PF13458.1 gi|564288036|ref|YP_008874230.1| - 2.2e-75 254.1 0.8 2.7e-75 253.8 0.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|564288036|ref|YP_008874230.1| - 4.2e-69 233.0 0.1 5.2e-69 232.7 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|564288036|ref|YP_008874230.1| - 0.013 15.4 3.8 0.03 14.2 2.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|564288037|ref|YP_008874231.1| - 1.4e-33 115.9 37.9 2.6e-33 115.1 26.3 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2613 PF11021.3 gi|564288037|ref|YP_008874231.1| - 1.1 9.0 0.0 1.1 9.0 0.0 4.1 4 1 1 5 5 5 0 Protein of unknown function (DUF2613) DUF3482 PF11981.3 gi|564288037|ref|YP_008874231.1| - 8 5.5 9.8 6.5 5.9 0.8 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF3482) BPD_transp_2 PF02653.11 gi|564288038|ref|YP_008874232.1| - 1.5e-32 112.6 39.5 3.1e-32 111.6 27.4 1.5 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|564288039|ref|YP_008874233.1| - 3.4e-31 108.3 0.0 5e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|564288039|ref|YP_008874233.1| - 2.3e-09 37.6 0.2 4.7e-05 23.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|564288039|ref|YP_008874233.1| - 6.1e-07 28.8 0.2 0.00033 19.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|564288039|ref|YP_008874233.1| - 1.4e-05 25.5 0.1 2.4e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|564288039|ref|YP_008874233.1| - 0.00017 20.8 0.0 0.00027 20.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|564288039|ref|YP_008874233.1| - 0.00035 20.0 0.0 0.00068 19.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|564288039|ref|YP_008874233.1| - 0.0047 16.4 0.1 0.024 14.0 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain BCA_ABC_TP_C PF12399.3 gi|564288039|ref|YP_008874233.1| - 0.0054 16.3 0.2 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.1 gi|564288039|ref|YP_008874233.1| - 0.011 15.7 1.5 0.037 14.0 1.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|564288039|ref|YP_008874233.1| - 0.016 15.1 0.0 0.038 13.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|564288039|ref|YP_008874233.1| - 0.02 14.4 0.0 0.039 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|564288039|ref|YP_008874233.1| - 0.027 14.6 0.1 0.099 12.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|564288039|ref|YP_008874233.1| - 0.028 14.2 0.0 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|564288039|ref|YP_008874233.1| - 0.038 14.8 0.9 0.21 12.3 0.6 2.3 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.22 gi|564288039|ref|YP_008874233.1| - 0.045 13.1 0.0 0.067 12.6 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_25 PF13481.1 gi|564288039|ref|YP_008874233.1| - 0.056 12.8 0.0 0.5 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|564288039|ref|YP_008874233.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_15 PF13175.1 gi|564288039|ref|YP_008874233.1| - 0.15 11.0 0.0 0.5 9.3 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|564288039|ref|YP_008874233.1| - 0.2 11.6 1.1 2.5 8.0 0.0 2.5 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|564288040|ref|YP_008874234.1| - 1.1e-34 119.7 0.0 1.8e-34 118.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|564288040|ref|YP_008874234.1| - 6.5e-09 36.1 0.2 0.0023 17.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|564288040|ref|YP_008874234.1| - 8.5e-05 22.6 0.0 0.00017 21.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|564288040|ref|YP_008874234.1| - 0.00011 21.6 0.0 0.00023 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|564288040|ref|YP_008874234.1| - 0.0048 16.1 0.0 0.0078 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|564288040|ref|YP_008874234.1| - 0.0052 15.6 0.1 0.01 14.7 0.1 1.4 1 0 0 1 1 1 1 NB-ARC domain Miro PF08477.8 gi|564288040|ref|YP_008874234.1| - 0.0067 16.9 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein NTPase_1 PF03266.10 gi|564288040|ref|YP_008874234.1| - 0.0072 16.0 0.4 0.021 14.5 0.0 2.1 2 1 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|564288040|ref|YP_008874234.1| - 0.0092 16.1 0.3 0.025 14.7 0.2 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|564288040|ref|YP_008874234.1| - 0.018 14.6 0.3 0.034 13.8 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|564288040|ref|YP_008874234.1| - 0.024 14.8 0.2 0.04 14.1 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|564288040|ref|YP_008874234.1| - 0.024 14.2 0.3 0.048 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|564288040|ref|YP_008874234.1| - 0.03 14.0 0.1 0.05 13.3 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|564288040|ref|YP_008874234.1| - 0.039 14.2 0.2 0.089 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|564288040|ref|YP_008874234.1| - 0.041 13.0 0.1 4.6 6.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|564288040|ref|YP_008874234.1| - 0.059 13.0 0.0 0.072 12.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|564288040|ref|YP_008874234.1| - 0.081 12.8 0.0 0.16 11.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain SMC_N PF02463.14 gi|564288040|ref|YP_008874234.1| - 0.15 11.2 0.3 0.53 9.4 0.2 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|564288040|ref|YP_008874234.1| - 0.18 11.7 0.7 1.3 9.0 0.5 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SNF PF00209.13 gi|564288041|ref|YP_008874235.1| - 1.1e-46 159.4 28.0 3.7e-26 91.6 9.0 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family MaoC_dehydratas PF01575.14 gi|564288042|ref|YP_008874236.1| - 5.5e-16 58.0 0.0 7.1e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|564288042|ref|YP_008874236.1| - 4.1e-07 29.8 0.0 1.1e-06 28.4 0.0 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Creatininase PF02633.9 gi|564288043|ref|YP_008874237.1| - 1.6e-62 210.6 0.5 1.8e-62 210.5 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF393 PF04134.7 gi|564288044|ref|YP_008874238.1| - 0.0017 19.4 0.0 0.0017 19.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 SHOCT PF09851.4 gi|564288294|ref|YP_008874239.1| - 4.1e-08 32.4 0.0 6.3e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|564288294|ref|YP_008874239.1| - 0.00027 20.6 1.0 0.00045 19.9 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) SpoIIIAH PF12685.2 gi|564288294|ref|YP_008874239.1| - 0.07 12.6 0.1 0.089 12.2 0.1 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein DUF1049 PF06305.6 gi|564288294|ref|YP_008874239.1| - 0.39 10.2 2.7 11 5.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Ftsk_gamma PF09397.5 gi|564288046|ref|YP_008874241.1| - 0.16 11.6 0.7 1.4 8.6 0.1 2.4 2 1 1 3 3 3 0 Ftsk gamma domain SdpI PF13630.1 gi|564288046|ref|YP_008874241.1| - 1.4 8.7 0.0 1.4 8.7 0.0 3.0 2 2 0 2 2 2 0 SdpI/YhfL protein family PQQ_2 PF13360.1 gi|564288047|ref|YP_008874242.1| - 4.1e-26 91.9 19.1 6.5e-13 48.6 2.4 3.5 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|564288047|ref|YP_008874242.1| - 2.1e-13 50.0 34.5 0.0062 16.7 0.6 7.8 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|564288047|ref|YP_008874242.1| - 1.9e-06 27.1 6.1 0.34 10.5 0.0 6.3 6 0 0 6 6 6 2 PQQ enzyme repeat MTH865 PF07747.6 gi|564288049|ref|YP_008874244.1| - 1.1e-16 60.1 0.0 1.2e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 MTH865-like family HMA PF00403.21 gi|564288050|ref|YP_008874245.1| - 7.7e-17 61.1 0.4 8.6e-17 61.0 0.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain BOFC_N PF08977.5 gi|564288050|ref|YP_008874245.1| - 0.044 13.5 0.4 0.088 12.6 0.0 1.5 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal DUF3759 PF12585.3 gi|564288050|ref|YP_008874245.1| - 0.074 12.9 0.3 0.093 12.6 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3759) Usp PF00582.21 gi|564288051|ref|YP_008874246.1| - 2.7e-26 92.4 1.0 3e-26 92.2 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|564288051|ref|YP_008874246.1| - 0.079 12.7 0.0 0.17 11.6 0.0 1.6 1 1 0 1 1 1 0 DNA photolyase Sulfatase PF00884.18 gi|564288052|ref|YP_008874247.1| - 1e-31 110.3 0.0 1.5e-31 109.7 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|564288052|ref|YP_008874247.1| - 3.7e-08 33.1 3.1 0.0015 17.9 0.1 2.3 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|564288052|ref|YP_008874247.1| - 0.00056 18.7 0.0 0.089 11.4 0.0 2.5 2 1 1 3 3 3 2 Alkaline phosphatase DUF229 PF02995.12 gi|564288052|ref|YP_008874247.1| - 0.0026 16.2 0.0 0.0038 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|564288052|ref|YP_008874247.1| - 0.0028 16.5 0.0 0.0047 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Phosphoesterase PF04185.9 gi|564288052|ref|YP_008874247.1| - 0.073 12.2 0.0 5.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Phosphoesterase family Metalloenzyme PF01676.13 gi|564288052|ref|YP_008874247.1| - 0.15 11.4 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily PIN_2 PF10130.4 gi|564288053|ref|YP_008874248.1| - 0.012 15.6 0.1 0.014 15.4 0.1 1.3 1 1 0 1 1 1 0 PIN domain RHH_1 PF01402.16 gi|564288053|ref|YP_008874248.1| - 0.053 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family P16-Arc PF04699.9 gi|564288053|ref|YP_008874248.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 ARP2/3 complex 16 kDa subunit (p16-Arc) Pyr_redox_2 PF07992.9 gi|564288054|ref|YP_008874249.1| - 3.9e-22 79.1 0.0 5.6e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|564288054|ref|YP_008874249.1| - 1.6e-07 31.6 0.2 0.0046 17.0 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|564288054|ref|YP_008874249.1| - 8.1e-07 28.2 3.5 0.00038 19.4 1.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|564288054|ref|YP_008874249.1| - 3.9e-06 25.9 3.5 0.00019 20.4 0.5 2.7 2 1 1 3 3 3 1 FAD binding domain FAD_oxidored PF12831.2 gi|564288054|ref|YP_008874249.1| - 1.6e-05 24.2 1.0 9.7e-05 21.6 0.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|564288054|ref|YP_008874249.1| - 4.7e-05 23.7 0.0 0.054 13.9 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|564288054|ref|YP_008874249.1| - 0.00012 21.2 0.6 0.00019 20.5 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|564288054|ref|YP_008874249.1| - 0.00016 20.2 0.2 0.012 14.1 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein K_oxygenase PF13434.1 gi|564288054|ref|YP_008874249.1| - 0.0002 20.4 0.0 0.00089 18.2 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|564288054|ref|YP_008874249.1| - 0.00067 18.6 0.4 0.0014 17.5 0.2 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|564288054|ref|YP_008874249.1| - 0.0012 18.0 0.1 0.0021 17.2 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|564288054|ref|YP_008874249.1| - 0.0062 16.5 0.2 0.017 15.1 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|564288054|ref|YP_008874249.1| - 0.026 14.3 1.7 0.48 10.1 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|564288054|ref|YP_008874249.1| - 0.15 10.9 0.2 0.39 9.5 0.2 1.6 1 1 1 2 2 2 0 Lycopene cyclase protein RNase_H PF00075.19 gi|564288295|ref|YP_008874250.1| - 2.1e-11 44.2 0.0 2.9e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|564288295|ref|YP_008874250.1| - 3.3e-06 26.7 0.0 5.4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like LRV PF01816.12 gi|564288295|ref|YP_008874250.1| - 1.1 9.5 5.4 4.4 7.7 0.3 3.2 2 1 1 3 3 3 0 Leucine rich repeat variant GSDH PF07995.6 gi|564288055|ref|YP_008874251.1| - 4.2e-111 371.2 0.0 4.9e-111 370.9 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.4 gi|564288055|ref|YP_008874251.1| - 0.037 14.0 1.9 0.037 14.0 1.3 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Glucodextran_B PF09136.5 gi|564288055|ref|YP_008874251.1| - 0.52 10.4 4.6 2.7 8.2 0.1 2.6 1 1 1 2 2 2 0 Glucodextranase, domain B IncA PF04156.9 gi|564288296|ref|YP_008874252.1| - 0.034 13.7 2.2 0.032 13.8 1.6 1.0 1 0 0 1 1 1 0 IncA protein DUF202 PF02656.10 gi|564288296|ref|YP_008874252.1| - 0.21 11.8 1.5 0.27 11.4 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) PHO4 PF01384.15 gi|564288056|ref|YP_008874254.1| - 1.8e-57 194.4 32.7 1.6e-55 188.0 20.0 2.0 2 0 0 2 2 2 2 Phosphate transporter family DUF2648 PF10855.3 gi|564288056|ref|YP_008874254.1| - 5.7 6.4 6.7 21 4.6 1.2 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) AA_permease_2 PF13520.1 gi|564288057|ref|YP_008874255.1| - 1.6e-45 155.4 41.4 2e-45 155.1 28.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|564288057|ref|YP_008874255.1| - 1.8e-45 155.2 40.4 2.2e-45 154.8 28.0 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|564288057|ref|YP_008874255.1| - 0.0016 17.1 13.0 0.0016 17.1 9.0 2.4 2 2 0 2 2 2 1 Spore germination protein Usp PF00582.21 gi|564288058|ref|YP_008874256.1| - 5.2e-09 36.4 1.0 3.4e-07 30.5 0.1 2.1 2 0 0 2 2 2 2 Universal stress protein family SCO1-SenC PF02630.9 gi|564288059|ref|YP_008874257.1| - 2.2e-12 46.9 0.0 2.9e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.4 gi|564288059|ref|YP_008874257.1| - 0.012 15.5 2.1 0.021 14.8 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Redoxin PF08534.5 gi|564288060|ref|YP_008874258.1| - 3.3e-08 33.1 0.0 4.2e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|564288060|ref|YP_008874258.1| - 4.5e-07 29.8 0.0 6.7e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|564288060|ref|YP_008874258.1| - 2.2e-06 27.3 0.0 2.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.15 gi|564288060|ref|YP_008874258.1| - 0.00026 20.6 0.0 0.00074 19.1 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|564288060|ref|YP_008874258.1| - 0.0026 17.9 0.0 0.0036 17.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain TAT_signal PF10518.4 gi|564288060|ref|YP_008874258.1| - 4.6 7.5 6.0 0.62 10.2 0.8 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DsbD PF02683.10 gi|564288061|ref|YP_008874259.1| - 9.1e-15 54.8 13.7 1.2e-14 54.4 9.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Tetraspannin PF00335.15 gi|564288061|ref|YP_008874259.1| - 2.8 7.1 10.0 0.15 11.3 3.0 1.8 2 0 0 2 2 2 0 Tetraspanin family TrkH PF02386.11 gi|564288062|ref|YP_008874260.1| - 8.5e-51 172.5 12.1 8.5e-51 172.5 8.4 2.5 2 1 0 2 2 2 2 Cation transport protein DUF3784 PF12650.2 gi|564288062|ref|YP_008874260.1| - 1.1 9.1 8.3 0.53 10.2 0.6 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) TrkA_N PF02254.13 gi|564288063|ref|YP_008874261.1| - 5.9e-25 87.5 5.3 7.7e-25 87.1 1.7 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|564288063|ref|YP_008874261.1| - 9e-15 54.0 0.9 3.4e-13 48.9 0.1 2.3 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|564288063|ref|YP_008874261.1| - 6.8e-06 26.4 3.1 2.4e-05 24.6 0.6 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|564288063|ref|YP_008874261.1| - 0.00013 22.0 0.4 0.00021 21.4 0.3 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.1 gi|564288063|ref|YP_008874261.1| - 0.0002 21.6 0.4 0.00036 20.8 0.1 1.5 2 0 0 2 2 1 1 XdhC Rossmann domain PEP-utilizers PF00391.18 gi|564288063|ref|YP_008874261.1| - 0.00036 20.0 0.4 0.0011 18.4 0.0 2.0 2 1 0 2 2 2 1 PEP-utilising enzyme, mobile domain NAD_binding_7 PF13241.1 gi|564288063|ref|YP_008874261.1| - 0.00056 20.1 0.6 0.0014 18.8 0.2 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|564288063|ref|YP_008874261.1| - 0.00059 19.7 0.6 0.0013 18.6 0.2 1.8 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|564288063|ref|YP_008874261.1| - 0.0047 16.9 0.6 0.0096 15.9 0.4 1.6 1 0 0 1 1 1 1 NADH(P)-binding ADH_zinc_N PF00107.21 gi|564288063|ref|YP_008874261.1| - 0.0056 16.2 0.5 0.075 12.5 0.6 2.0 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Peripla_BP_3 PF13377.1 gi|564288063|ref|YP_008874261.1| - 0.01 15.8 0.2 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein-like domain Pyr_redox PF00070.22 gi|564288063|ref|YP_008874261.1| - 0.011 16.0 0.3 0.039 14.3 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|564288063|ref|YP_008874261.1| - 0.018 14.4 1.5 0.69 9.2 0.1 2.2 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|564288063|ref|YP_008874261.1| - 0.032 13.8 0.4 0.049 13.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KR PF08659.5 gi|564288063|ref|YP_008874261.1| - 0.041 13.5 0.3 0.057 13.0 0.2 1.2 1 0 0 1 1 1 0 KR domain GFO_IDH_MocA PF01408.17 gi|564288063|ref|YP_008874261.1| - 0.046 14.2 0.6 0.11 13.0 0.4 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|564288063|ref|YP_008874261.1| - 0.06 12.4 0.3 0.13 11.3 0.1 1.8 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.8 gi|564288063|ref|YP_008874261.1| - 0.099 11.8 0.5 0.16 11.1 0.4 1.6 1 1 0 1 1 1 0 NmrA-like family PK_C PF02887.11 gi|564288063|ref|YP_008874261.1| - 0.13 11.8 2.4 0.1 12.1 0.1 2.0 3 1 0 3 3 2 0 Pyruvate kinase, alpha/beta domain ThiF PF00899.16 gi|564288063|ref|YP_008874261.1| - 0.73 9.6 3.3 1.1 9.1 0.3 2.2 1 1 1 2 2 2 0 ThiF family p25-alpha PF05517.7 gi|564288064|ref|YP_008874262.1| - 0.076 13.2 0.0 0.087 13.0 0.0 1.1 1 0 0 1 1 1 0 p25-alpha TrkA_C PF02080.16 gi|564288065|ref|YP_008874263.1| - 1.7e-13 49.9 0.5 3.3e-13 49.0 0.4 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|564288065|ref|YP_008874263.1| - 9.1e-13 47.3 0.1 1.7e-12 46.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|564288065|ref|YP_008874263.1| - 8.1e-11 41.2 0.3 1.5e-10 40.3 0.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|564288065|ref|YP_008874263.1| - 2.3e-06 27.1 0.0 5.2e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|564288065|ref|YP_008874263.1| - 3.9e-06 26.5 0.0 8.3e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|564288065|ref|YP_008874263.1| - 6.8e-05 22.3 0.0 0.00016 21.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|564288065|ref|YP_008874263.1| - 0.00012 21.6 0.1 0.00056 19.5 0.0 2.1 2 0 0 2 2 2 1 MarR family HrcA_DNA-bdg PF03444.10 gi|564288065|ref|YP_008874263.1| - 0.00028 20.2 0.0 0.00048 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.14 gi|564288065|ref|YP_008874263.1| - 0.0015 18.3 0.0 0.003 17.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|564288065|ref|YP_008874263.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|564288065|ref|YP_008874263.1| - 0.0059 16.1 0.2 0.013 15.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|564288065|ref|YP_008874263.1| - 0.0071 15.9 0.0 0.017 14.7 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|564288065|ref|YP_008874263.1| - 0.01 15.5 0.0 0.056 13.1 0.0 2.1 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|564288065|ref|YP_008874263.1| - 0.017 15.2 0.1 0.047 13.8 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_28 PF13518.1 gi|564288065|ref|YP_008874263.1| - 0.04 13.9 0.0 0.075 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.3 gi|564288065|ref|YP_008874263.1| - 0.14 12.0 0.1 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Usp PF00582.21 gi|564288298|ref|YP_008874264.1| - 3.5e-13 49.9 4.0 3.7e-07 30.4 1.2 2.2 2 0 0 2 2 2 2 Universal stress protein family DUF1020 PF06255.8 gi|564288298|ref|YP_008874264.1| - 0.091 11.9 0.2 0.12 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1020) Nitroreductase PF00881.19 gi|564288066|ref|YP_008874265.1| - 1.1e-20 74.1 0.0 1.3e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF3277 PF11681.3 gi|564288067|ref|YP_008874266.1| - 1.2 8.6 5.6 0.14 11.6 0.2 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3277) HTH_Crp_2 PF13545.1 gi|564288068|ref|YP_008874267.1| - 2.5e-06 27.1 0.1 1.2e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|564288068|ref|YP_008874267.1| - 5e-06 26.0 0.2 1.1e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|564288068|ref|YP_008874267.1| - 8.5e-05 22.1 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|564288068|ref|YP_008874267.1| - 0.00013 21.2 0.0 0.0002 20.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Crp PF00325.15 gi|564288068|ref|YP_008874267.1| - 0.00027 20.3 0.0 0.00052 19.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_27 PF13463.1 gi|564288068|ref|YP_008874267.1| - 0.00032 20.9 0.1 0.00077 19.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|564288068|ref|YP_008874267.1| - 0.00037 20.1 0.0 0.00065 19.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|564288068|ref|YP_008874267.1| - 0.0008 19.0 0.0 0.0016 18.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|564288068|ref|YP_008874267.1| - 0.00085 19.0 0.2 0.0018 18.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|564288068|ref|YP_008874267.1| - 0.0018 18.3 0.0 0.0037 17.3 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|564288068|ref|YP_008874267.1| - 0.0034 16.9 0.3 0.016 14.7 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|564288068|ref|YP_008874267.1| - 0.012 15.2 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.7 gi|564288068|ref|YP_008874267.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|564288068|ref|YP_008874267.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sulfolobus_pRN PF05584.6 gi|564288068|ref|YP_008874267.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_7 PF02796.10 gi|564288068|ref|YP_008874267.1| - 0.019 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_3 PF01381.17 gi|564288068|ref|YP_008874267.1| - 0.086 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_45 PF14947.1 gi|564288068|ref|YP_008874267.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix ABC_tran PF00005.22 gi|564288069|ref|YP_008874268.1| - 1.1e-24 87.2 0.0 1.6e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|564288069|ref|YP_008874268.1| - 4e-14 53.2 0.0 3.6e-09 37.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|564288069|ref|YP_008874268.1| - 4.9e-06 25.8 0.0 0.00016 20.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|564288069|ref|YP_008874268.1| - 2.4e-05 23.2 0.1 3.6e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 ArgK protein SMC_N PF02463.14 gi|564288069|ref|YP_008874268.1| - 0.00023 20.4 0.0 0.21 10.7 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|564288069|ref|YP_008874268.1| - 0.00048 19.6 0.0 0.1 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|564288069|ref|YP_008874268.1| - 0.0036 17.6 0.1 0.0054 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|564288069|ref|YP_008874268.1| - 0.007 15.9 0.0 0.021 14.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|564288069|ref|YP_008874268.1| - 0.02 14.4 0.1 0.05 13.1 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|564288069|ref|YP_008874268.1| - 0.023 14.9 0.9 0.91 9.7 0.1 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|564288069|ref|YP_008874268.1| - 0.023 14.6 0.0 0.064 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|564288069|ref|YP_008874268.1| - 0.041 13.4 0.2 0.079 12.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF148 PF02520.12 gi|564288069|ref|YP_008874268.1| - 0.043 13.6 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 AAA_13 PF13166.1 gi|564288069|ref|YP_008874268.1| - 0.05 12.0 0.0 3.4 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|564288069|ref|YP_008874268.1| - 0.058 12.8 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|564288069|ref|YP_008874268.1| - 0.12 11.5 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 LSPR PF06049.7 gi|564288069|ref|YP_008874268.1| - 1.1 8.9 3.4 44 4.1 0.1 3.7 3 1 0 3 3 3 0 Coagulation Factor V LSPD Repeat SHR3_chaperone PF08229.6 gi|564288070|ref|YP_008874269.1| - 0.43 9.5 2.1 0.59 9.0 0.1 2.1 2 0 0 2 2 2 0 ER membrane protein SH3 TcpE PF12648.2 gi|564288070|ref|YP_008874269.1| - 2.5 8.2 5.2 0.56 10.3 0.2 2.4 2 0 0 2 2 2 0 TcpE family DUF2249 PF10006.4 gi|564288071|ref|YP_008874270.1| - 1.1e-23 82.5 0.2 1.2e-23 82.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2378 PF09536.5 gi|564288073|ref|YP_008874272.1| - 0.0027 17.2 0.0 1.4 8.3 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2378) MarR_2 PF12802.2 gi|564288074|ref|YP_008874273.1| - 5.2e-07 29.2 0.8 1.5e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|564288074|ref|YP_008874273.1| - 5.9e-06 25.7 0.0 1.4e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|564288074|ref|YP_008874273.1| - 0.00011 21.8 0.0 0.00025 20.6 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|564288074|ref|YP_008874273.1| - 0.00016 21.3 0.0 0.00034 20.2 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|564288074|ref|YP_008874273.1| - 0.00049 20.3 0.0 0.0027 17.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.16 gi|564288074|ref|YP_008874273.1| - 0.0089 15.4 1.1 0.03 13.7 0.0 2.4 3 1 0 3 3 3 1 Bacterial regulatory proteins, gntR family RP-C PF03428.8 gi|564288074|ref|YP_008874273.1| - 0.0095 15.3 4.9 0.2 11.1 3.8 2.5 2 1 0 2 2 2 1 Replication protein C N-terminal domain Sulfolobus_pRN PF05584.6 gi|564288074|ref|YP_008874273.1| - 0.012 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Rrf2 PF02082.15 gi|564288074|ref|YP_008874273.1| - 0.016 15.3 0.0 0.034 14.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.1 gi|564288074|ref|YP_008874273.1| - 0.033 14.3 3.8 2.5 8.2 0.0 2.6 1 1 1 3 3 3 0 Winged helix-turn helix HTH_5 PF01022.15 gi|564288074|ref|YP_008874273.1| - 0.036 13.7 0.0 0.082 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|564288074|ref|YP_008874273.1| - 0.046 13.5 0.1 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|564288074|ref|YP_008874273.1| - 0.06 12.7 0.1 0.25 10.7 0.0 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Syntaxin-6_N PF09177.6 gi|564288074|ref|YP_008874273.1| - 0.25 11.7 3.4 0.64 10.4 1.5 2.2 2 0 0 2 2 2 0 Syntaxin 6, N-terminal HTH_20 PF12840.2 gi|564288075|ref|YP_008874274.1| - 4.4e-12 45.6 0.1 6e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|564288075|ref|YP_008874274.1| - 3.1e-07 29.9 0.0 5.5e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|564288075|ref|YP_008874274.1| - 3e-06 26.7 0.0 6.5e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|564288075|ref|YP_008874274.1| - 5.3e-06 25.7 0.0 8e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|564288075|ref|YP_008874274.1| - 1.9e-05 24.8 0.0 0.00013 22.2 0.0 1.9 1 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|564288075|ref|YP_008874274.1| - 0.00088 18.9 0.0 0.0016 18.1 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|564288075|ref|YP_008874274.1| - 0.0029 17.4 0.0 0.0039 17.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|564288075|ref|YP_008874274.1| - 0.0033 17.4 0.0 0.0044 17.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) MarR PF01047.17 gi|564288075|ref|YP_008874274.1| - 0.005 16.5 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family Fructosamin_kin PF03881.9 gi|564288076|ref|YP_008874275.1| - 1.6e-41 142.2 0.0 2e-41 141.8 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.18 gi|564288076|ref|YP_008874275.1| - 1.3e-15 57.7 6.2 1.7e-15 57.4 4.3 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.9 gi|564288076|ref|YP_008874275.1| - 0.0018 17.5 0.1 0.0039 16.3 0.0 1.6 2 0 0 2 2 2 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase Sugar_tr PF00083.19 gi|564288077|ref|YP_008874276.1| - 1.6e-122 409.3 23.6 1.8e-122 409.1 16.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|564288077|ref|YP_008874276.1| - 2.6e-43 148.0 76.8 5.6e-34 117.4 28.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|564288077|ref|YP_008874276.1| - 1.5e-08 33.2 2.8 1.5e-08 33.2 1.9 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.8 gi|564288077|ref|YP_008874276.1| - 0.0017 16.5 7.3 0.0017 16.5 5.1 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector Bac_export_3 PF01313.14 gi|564288077|ref|YP_008874276.1| - 0.022 14.4 0.3 0.022 14.4 0.2 3.8 2 1 1 3 3 3 0 Bacterial export proteins, family 3 She9_MDM33 PF05546.6 gi|564288077|ref|YP_008874276.1| - 0.072 12.6 0.1 0.61 9.6 0.1 2.1 2 0 0 2 2 2 0 She9 / Mdm33 family MFS_1_like PF12832.2 gi|564288077|ref|YP_008874276.1| - 0.25 11.1 4.6 2.4 7.9 0.1 3.3 3 0 0 3 3 3 0 MFS_1 like family Usp PF00582.21 gi|564288078|ref|YP_008874277.1| - 2.4e-18 66.7 0.8 3.1e-18 66.2 0.6 1.2 1 0 0 1 1 1 1 Universal stress protein family PgaD PF13994.1 gi|564288078|ref|YP_008874277.1| - 0.17 11.3 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 PgaD-like protein Peripla_BP_2 PF01497.13 gi|564288079|ref|YP_008874278.1| - 3.9e-19 68.7 0.0 1e-18 67.3 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|564288079|ref|YP_008874278.1| - 0.0043 16.9 0.6 0.0083 16.0 0.4 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.13 gi|564288080|ref|YP_008874279.1| - 3.7e-21 75.3 0.0 6.6e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein YqgF PF14639.1 gi|564288080|ref|YP_008874279.1| - 0.061 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 TAT_signal PF10518.4 gi|564288080|ref|YP_008874279.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_2 PF01497.13 gi|564288081|ref|YP_008874280.1| - 6.8e-14 51.5 0.0 8.5e-14 51.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HTH_24 PF13412.1 gi|564288082|ref|YP_008874281.1| - 1.8e-13 49.5 0.2 2.8e-13 49.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|564288082|ref|YP_008874281.1| - 6e-11 41.7 0.8 1.2e-10 40.7 0.6 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|564288082|ref|YP_008874281.1| - 8.6e-06 25.4 0.0 1.9e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|564288082|ref|YP_008874281.1| - 1e-05 25.0 0.0 2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|564288082|ref|YP_008874281.1| - 0.00014 21.3 0.1 0.0042 16.5 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.2 gi|564288082|ref|YP_008874281.1| - 0.00019 21.0 0.0 0.00037 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|564288082|ref|YP_008874281.1| - 0.00021 20.8 0.0 0.00038 19.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|564288082|ref|YP_008874281.1| - 0.00046 20.2 0.0 0.0011 19.0 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|564288082|ref|YP_008874281.1| - 0.00057 19.4 0.0 0.00098 18.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|564288082|ref|YP_008874281.1| - 0.0012 18.6 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|564288082|ref|YP_008874281.1| - 0.0014 18.8 0.1 0.0087 16.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|564288082|ref|YP_008874281.1| - 0.0027 17.1 0.0 0.0048 16.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.6 gi|564288082|ref|YP_008874281.1| - 0.024 14.3 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.1 gi|564288082|ref|YP_008874281.1| - 0.037 13.1 0.1 0.082 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|564288082|ref|YP_008874281.1| - 0.057 13.1 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.1 gi|564288082|ref|YP_008874281.1| - 0.15 11.7 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Oxidored_q1 PF00361.15 gi|564288083|ref|YP_008874282.1| - 7.7e-32 110.6 10.3 7.7e-32 110.6 7.2 2.1 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|564288083|ref|YP_008874282.1| - 0.00042 19.8 0.1 0.0014 18.1 0.1 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.4 gi|564288084|ref|YP_008874283.1| - 4.4e-253 841.9 0.0 9.8e-253 840.8 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Bac_luciferase PF00296.15 gi|564288085|ref|YP_008874284.1| - 1e-31 110.2 3.2 1.3e-31 109.9 2.2 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase ADH_N PF08240.7 gi|564288086|ref|YP_008874285.1| - 5.5e-32 109.7 0.3 1e-31 108.9 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|564288086|ref|YP_008874285.1| - 9.6e-32 109.2 1.0 1.4e-31 108.7 0.7 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|564288086|ref|YP_008874285.1| - 0.00048 21.0 1.1 0.00098 20.0 0.8 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.11 gi|564288086|ref|YP_008874285.1| - 0.0054 17.1 2.5 0.0097 16.3 1.7 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|564288086|ref|YP_008874285.1| - 0.033 13.3 0.0 0.057 12.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MR_MLE_C PF13378.1 gi|564288087|ref|YP_008874286.1| - 9.3e-32 109.3 0.0 1.9e-31 108.2 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|564288087|ref|YP_008874286.1| - 1.7e-21 76.3 0.0 3.7e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|564288087|ref|YP_008874286.1| - 1e-13 51.6 0.1 2.7e-13 50.2 0.1 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain adh_short PF00106.20 gi|564288088|ref|YP_008874287.1| - 1.4e-35 122.6 2.5 1.9e-35 122.2 1.7 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|564288088|ref|YP_008874287.1| - 3.5e-34 118.6 0.2 4.2e-34 118.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|564288088|ref|YP_008874287.1| - 1.9e-14 53.7 1.7 3e-14 53.0 1.2 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|564288088|ref|YP_008874287.1| - 0.0002 21.4 1.3 0.00032 20.7 0.9 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|564288088|ref|YP_008874287.1| - 0.00062 19.2 0.2 0.00082 18.8 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|564288088|ref|YP_008874287.1| - 0.014 14.1 0.5 0.017 13.8 0.4 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family FGGY_C PF02782.11 gi|564288089|ref|YP_008874288.1| - 3.3e-24 85.5 0.0 5e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.16 gi|564288089|ref|YP_008874288.1| - 3.5e-17 62.5 0.0 4.8e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Aldolase_II PF00596.16 gi|564288090|ref|YP_008874289.1| - 3.5e-49 166.9 0.4 4.1e-49 166.6 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain ABC_tran PF00005.22 gi|564288091|ref|YP_008874290.1| - 1.1e-31 109.9 0.0 2.1e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|564288091|ref|YP_008874290.1| - 7.5e-11 41.8 0.3 3.2e-10 39.8 0.1 2.3 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.1 gi|564288091|ref|YP_008874290.1| - 2.1e-10 41.0 0.0 0.0005 20.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|564288091|ref|YP_008874290.1| - 1e-05 25.4 0.3 0.0021 18.1 0.0 3.1 3 0 0 3 3 3 1 TOBE domain DUF258 PF03193.11 gi|564288091|ref|YP_008874290.1| - 0.00011 21.4 0.0 0.00021 20.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|564288091|ref|YP_008874290.1| - 0.00019 20.7 0.2 0.00042 19.6 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|564288091|ref|YP_008874290.1| - 0.00024 20.3 0.0 0.02 13.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|564288091|ref|YP_008874290.1| - 0.00037 19.9 0.0 0.00077 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|564288091|ref|YP_008874290.1| - 0.00056 19.7 0.0 0.0024 17.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|564288091|ref|YP_008874290.1| - 0.0012 19.6 0.1 0.003 18.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|564288091|ref|YP_008874290.1| - 0.0022 18.0 0.0 0.0054 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|564288091|ref|YP_008874290.1| - 0.0034 16.8 0.0 0.0063 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|564288091|ref|YP_008874290.1| - 0.0035 17.4 0.1 0.009 16.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain MobB PF03205.9 gi|564288091|ref|YP_008874290.1| - 0.0044 16.7 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|564288091|ref|YP_008874290.1| - 0.0068 15.8 0.2 0.064 12.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|564288091|ref|YP_008874290.1| - 0.015 15.6 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|564288091|ref|YP_008874290.1| - 0.018 15.2 0.1 0.056 13.6 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|564288091|ref|YP_008874290.1| - 0.021 15.1 0.0 0.041 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|564288091|ref|YP_008874290.1| - 0.049 13.6 0.0 0.097 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|564288091|ref|YP_008874290.1| - 0.11 12.6 0.1 0.24 11.5 0.1 1.7 1 1 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|564288092|ref|YP_008874291.1| - 2e-17 63.2 18.8 2e-17 63.2 13.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|564288093|ref|YP_008874292.1| - 2e-18 66.5 21.2 2e-18 66.5 14.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|564288094|ref|YP_008874293.1| - 3.4e-25 89.4 3.2 5e-25 88.8 2.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|564288094|ref|YP_008874293.1| - 0.02 14.8 0.7 0.041 13.9 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_11 PF13531.1 gi|564288094|ref|YP_008874293.1| - 0.029 14.0 0.1 1.8 8.1 0.0 2.8 3 0 0 3 3 3 0 Bacterial extracellular solute-binding protein ADH_N PF08240.7 gi|564288095|ref|YP_008874294.1| - 5.2e-34 116.2 3.2 5.2e-34 116.2 2.2 2.1 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|564288095|ref|YP_008874294.1| - 1.1e-21 76.7 0.0 1.6e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase F420_oxidored PF03807.12 gi|564288095|ref|YP_008874294.1| - 0.00016 22.0 0.0 0.00033 21.0 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N_2 PF13602.1 gi|564288095|ref|YP_008874294.1| - 0.00096 20.0 0.0 0.0019 19.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|564288095|ref|YP_008874294.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain EF-hand_7 PF13499.1 gi|564288095|ref|YP_008874294.1| - 0.053 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair NTP_transf_3 PF12804.2 gi|564288095|ref|YP_008874294.1| - 0.065 13.3 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 MobA-like NTP transferase domain Pyr_redox PF00070.22 gi|564288095|ref|YP_008874294.1| - 0.13 12.6 0.3 0.69 10.3 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase IclR PF01614.13 gi|564288096|ref|YP_008874295.1| - 7e-29 100.1 0.0 2.5e-27 95.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|564288096|ref|YP_008874295.1| - 2.4e-11 43.0 0.4 5.7e-11 41.8 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|564288096|ref|YP_008874295.1| - 1.4e-07 31.0 0.0 2.2e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|564288096|ref|YP_008874295.1| - 9.8e-06 25.1 0.0 3.4e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|564288096|ref|YP_008874295.1| - 1.5e-05 24.7 0.1 4.5e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|564288096|ref|YP_008874295.1| - 1.9e-05 24.2 0.1 4.1e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|564288096|ref|YP_008874295.1| - 0.00012 21.7 0.1 0.00025 20.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|564288096|ref|YP_008874295.1| - 0.0039 17.2 0.0 0.0071 16.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|564288096|ref|YP_008874295.1| - 0.0057 16.0 0.0 0.0095 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|564288096|ref|YP_008874295.1| - 0.0076 16.1 0.1 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|564288096|ref|YP_008874295.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ANT PF03374.9 gi|564288096|ref|YP_008874295.1| - 0.016 15.2 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain FaeA PF04703.7 gi|564288096|ref|YP_008874295.1| - 0.031 14.4 0.0 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein HTH_27 PF13463.1 gi|564288096|ref|YP_008874295.1| - 0.037 14.3 0.1 0.11 12.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR PF01047.17 gi|564288096|ref|YP_008874295.1| - 0.04 13.6 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HEAT_2 PF13646.1 gi|564288097|ref|YP_008874296.1| - 3.3e-14 52.9 19.8 3e-07 30.6 0.6 3.8 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.1 gi|564288097|ref|YP_008874296.1| - 8.6e-12 45.1 11.1 0.001 19.5 0.0 5.2 1 1 4 5 5 5 4 HEAT-like repeat HEAT PF02985.17 gi|564288097|ref|YP_008874296.1| - 4.6e-08 32.4 2.3 0.033 14.2 0.0 4.9 5 0 0 5 5 5 2 HEAT repeat DZR PF12773.2 gi|564288097|ref|YP_008874296.1| - 0.00037 20.2 0.3 0.00081 19.1 0.2 1.5 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|564288097|ref|YP_008874296.1| - 0.0011 18.3 5.8 0.0021 17.4 4.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Adaptin_N PF01602.15 gi|564288097|ref|YP_008874296.1| - 0.0037 15.6 0.1 1.9 6.7 0.0 2.7 1 1 2 3 3 3 2 Adaptin N terminal region Apolipoprotein PF01442.13 gi|564288097|ref|YP_008874296.1| - 0.015 14.8 0.4 0.03 13.8 0.3 1.4 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain TPR_4 PF07721.9 gi|564288097|ref|YP_008874296.1| - 0.36 11.3 7.9 13 6.6 0.1 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat zf-ribbon_3 PF13248.1 gi|564288097|ref|YP_008874296.1| - 0.42 9.8 6.2 1.6 8.0 4.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain HEAT_PBS PF03130.11 gi|564288097|ref|YP_008874296.1| - 0.67 10.5 13.9 9.2 7.0 0.1 5.4 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat DUF162 PF02589.10 gi|564288098|ref|YP_008874297.1| - 4.4e-24 85.0 1.0 7.4e-24 84.3 0.7 1.3 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 DUF162 PF02589.10 gi|564288099|ref|YP_008874298.1| - 5.5e-39 133.6 1.2 1.2e-38 132.5 0.8 1.6 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|564288099|ref|YP_008874298.1| - 2.9e-09 36.7 4.0 5.8e-09 35.8 2.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|564288099|ref|YP_008874298.1| - 3.7e-08 33.6 5.6 5.7e-06 26.6 0.5 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|564288099|ref|YP_008874298.1| - 5.7e-07 29.7 2.4 1.2e-06 28.8 1.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|564288099|ref|YP_008874298.1| - 1.4e-06 28.5 6.1 3.2e-06 27.4 4.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|564288099|ref|YP_008874298.1| - 2.8e-05 23.8 10.0 0.0016 18.2 8.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|564288099|ref|YP_008874298.1| - 9.5e-05 22.1 12.3 0.00014 21.5 1.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|564288099|ref|YP_008874298.1| - 0.00011 22.4 9.9 0.0012 19.0 7.2 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|564288099|ref|YP_008874298.1| - 0.00013 21.4 13.8 0.00017 21.0 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|564288099|ref|YP_008874298.1| - 0.00033 20.4 9.4 0.0019 18.0 6.5 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|564288099|ref|YP_008874298.1| - 0.00075 19.2 11.8 0.0094 15.8 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain UL40 PF10682.4 gi|564288099|ref|YP_008874298.1| - 0.0018 17.8 0.1 0.003 17.1 0.1 1.3 1 0 0 1 1 1 1 Glycoprotein of human cytomegalovirus HHV-5 Fer4_4 PF12800.2 gi|564288099|ref|YP_008874298.1| - 0.017 15.4 14.4 0.041 14.2 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|564288099|ref|YP_008874298.1| - 0.029 14.0 2.3 0.13 11.9 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|564288099|ref|YP_008874298.1| - 0.055 14.0 18.2 0.038 14.5 4.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|564288099|ref|YP_008874298.1| - 0.39 11.3 5.7 0.39 11.3 0.2 3.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|564288099|ref|YP_008874298.1| - 2.7 8.7 12.4 0.88 10.3 2.0 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF2088 PF09861.4 gi|564288100|ref|YP_008874299.1| - 4.9e-05 22.4 0.0 8.1e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF4147 PF13660.1 gi|564288101|ref|YP_008874300.1| - 1.2e-74 250.4 1.5 1.7e-74 249.9 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|564288101|ref|YP_008874300.1| - 2.8e-21 75.6 5.3 2.8e-21 75.6 3.7 2.0 2 1 1 3 3 3 1 MOFRL family Glyco_hydro_88 PF07470.8 gi|564288102|ref|YP_008874301.1| - 1.8e-57 194.8 0.0 2.4e-57 194.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Prenyltrans_2 PF13249.1 gi|564288102|ref|YP_008874301.1| - 0.00014 22.2 0.2 0.49 10.8 0.0 2.5 2 1 0 2 2 2 2 Prenyltransferase-like DUF1680 PF07944.7 gi|564288102|ref|YP_008874301.1| - 0.023 13.0 0.0 0.033 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative glycosyl hydrolase of unknown function (DUF1680) VCBS PF13517.1 gi|564288103|ref|YP_008874302.1| - 2.7e-29 101.2 23.8 5.7e-11 42.6 1.5 5.4 3 2 2 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|564288103|ref|YP_008874302.1| - 9e-29 98.4 33.4 0.00013 21.5 0.0 7.3 7 0 0 7 7 7 7 FG-GAP repeat TcdB_toxin_midN PF12256.3 gi|564288103|ref|YP_008874302.1| - 6e-12 45.3 14.2 0.028 13.8 0.1 6.9 2 1 4 7 7 7 4 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.1 gi|564288103|ref|YP_008874302.1| - 2.4e-05 24.0 1.1 2.3 8.0 0.0 5.1 5 0 0 5 5 5 2 Ciliary BBSome complex subunit 2, middle region EF-hand_5 PF13202.1 gi|564288103|ref|YP_008874302.1| - 0.064 12.6 0.3 0.064 12.6 0.2 5.2 5 0 0 5 5 5 0 EF hand EF-hand_1 PF00036.27 gi|564288103|ref|YP_008874302.1| - 9.3 5.8 17.9 5.9 6.4 0.1 5.2 5 0 0 5 5 5 0 EF hand UDPG_MGDP_dh_N PF03721.9 gi|564288104|ref|YP_008874303.1| - 1.2e-43 148.7 0.0 2.1e-43 147.8 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|564288104|ref|YP_008874303.1| - 1.3e-24 86.2 0.0 2.1e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|564288104|ref|YP_008874303.1| - 1.6e-17 63.5 0.0 4.8e-17 62.0 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ApbA PF02558.11 gi|564288104|ref|YP_008874303.1| - 0.0013 18.1 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|564288104|ref|YP_008874303.1| - 0.0016 18.2 0.0 0.0067 16.2 0.0 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|564288104|ref|YP_008874303.1| - 0.0018 18.0 0.0 0.02 14.6 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|564288104|ref|YP_008874303.1| - 0.0018 17.9 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|564288104|ref|YP_008874303.1| - 0.0034 16.9 0.0 0.0074 15.8 0.0 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|564288104|ref|YP_008874303.1| - 0.0095 15.9 0.1 0.11 12.5 0.0 2.7 2 1 0 2 2 2 1 TrkA-N domain NAD_binding_8 PF13450.1 gi|564288104|ref|YP_008874303.1| - 0.0098 15.9 0.0 1.7 8.7 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|564288104|ref|YP_008874303.1| - 0.017 15.4 0.0 0.091 13.1 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|564288104|ref|YP_008874303.1| - 0.022 13.9 0.0 0.14 11.3 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Polysacc_synt PF01943.12 gi|564288105|ref|YP_008874304.1| - 6.8e-37 127.2 7.0 6.8e-37 127.2 4.9 2.4 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|564288105|ref|YP_008874304.1| - 1.6e-23 83.4 9.1 1.6e-23 83.4 6.3 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|564288105|ref|YP_008874304.1| - 4.6e-07 29.7 16.9 4.6e-07 29.7 11.7 3.4 3 1 1 4 4 4 1 Polysaccharide biosynthesis C-terminal domain Glycos_transf_1 PF00534.15 gi|564288106|ref|YP_008874305.1| - 4.3e-34 117.4 0.0 1.1e-33 116.1 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|564288106|ref|YP_008874305.1| - 1.3e-18 67.4 0.0 2.9e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|564288106|ref|YP_008874305.1| - 1.1e-12 48.3 0.0 2.2e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|564288106|ref|YP_008874305.1| - 1.4e-12 47.7 0.0 2.3e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|564288106|ref|YP_008874305.1| - 3.2e-06 27.2 0.0 7.6e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|564288106|ref|YP_008874305.1| - 0.0015 18.3 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF1616 PF07760.6 gi|564288300|ref|YP_008874307.1| - 5.6e-44 150.4 0.4 6.6e-44 150.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF3792 PF12670.2 gi|564288300|ref|YP_008874307.1| - 0.1 12.4 6.6 0.25 11.2 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) Sulfatase PF00884.18 gi|564288107|ref|YP_008874309.1| - 2.8e-37 128.5 0.8 4e-37 128.0 0.6 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|564288107|ref|YP_008874309.1| - 3.8e-05 23.1 0.6 0.0081 15.5 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|564288108|ref|YP_008874310.1| - 0.00049 19.3 0.4 0.00065 18.9 0.3 1.2 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.7 gi|564288108|ref|YP_008874310.1| - 0.11 12.1 0.2 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 PglZ domain Pectate_lyase_3 PF12708.2 gi|564288302|ref|YP_008874311.1| - 1.5e-20 74.2 1.9 1.5e-20 74.2 1.3 2.6 1 1 1 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|564288302|ref|YP_008874311.1| - 3.9e-07 29.9 15.2 0.00026 20.7 9.3 2.7 1 1 2 3 3 3 3 Right handed beta helix region End_N_terminal PF12218.3 gi|564288302|ref|YP_008874311.1| - 0.0049 16.3 0.2 0.014 14.7 0.2 1.8 1 0 0 1 1 1 1 N terminal extension of bacteriophage endosialidase Sulfatase PF00884.18 gi|564288303|ref|YP_008874312.1| - 0.0001 21.6 0.2 0.00013 21.3 0.1 1.2 1 0 0 1 1 1 1 Sulfatase SCPU PF05229.10 gi|564288304|ref|YP_008874313.1| - 0.37 10.8 3.2 0.28 11.2 0.4 2.0 2 1 1 3 3 3 0 Spore Coat Protein U domain Glycos_transf_2 PF00535.21 gi|564288109|ref|YP_008874315.1| - 7.1e-31 107.1 0.3 1.4e-30 106.2 0.1 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|564288109|ref|YP_008874315.1| - 2.3e-16 60.3 0.9 3.6e-16 59.6 0.7 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|564288109|ref|YP_008874315.1| - 3.2e-09 36.2 0.0 5.7e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_2 PF07719.12 gi|564288109|ref|YP_008874315.1| - 0.064 13.1 1.0 0.16 11.9 0.7 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|564288109|ref|YP_008874315.1| - 0.18 11.7 1.1 0.38 10.7 0.8 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat Epimerase_2 PF02350.14 gi|564288110|ref|YP_008874316.1| - 1.7e-98 329.6 0.0 2e-98 329.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|564288110|ref|YP_008874316.1| - 0.068 12.0 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) MGDG_synth PF06925.6 gi|564288110|ref|YP_008874316.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase Glycos_transf_1 PF00534.15 gi|564288306|ref|YP_008874317.1| - 2.7e-31 108.3 0.0 3.7e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|564288306|ref|YP_008874317.1| - 1.7e-16 60.5 0.1 5.3e-16 59.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|564288306|ref|YP_008874317.1| - 5.8e-09 36.2 1.1 1.4e-07 31.8 0.0 2.7 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|564288306|ref|YP_008874317.1| - 1.2e-08 35.1 0.0 3.2e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 TPP_enzyme_M PF00205.17 gi|564288306|ref|YP_008874317.1| - 0.14 11.8 0.0 0.44 10.3 0.0 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Hepar_II_III PF07940.8 gi|564288307|ref|YP_008874318.1| - 5.9e-18 65.0 1.4 1.1e-17 64.1 0.6 1.8 2 0 0 2 2 2 1 Heparinase II/III-like protein Glyco_trans_1_4 PF13692.1 gi|564288111|ref|YP_008874319.1| - 2.3e-20 73.1 0.0 3.8e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|564288111|ref|YP_008874319.1| - 2.7e-16 59.4 0.0 3.9e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|564288111|ref|YP_008874319.1| - 2e-15 57.3 0.9 3.3e-15 56.5 0.6 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|564288111|ref|YP_008874319.1| - 3.8e-06 27.0 0.0 8.4e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|564288111|ref|YP_008874319.1| - 1e-05 25.3 0.0 8.7e-05 22.3 0.0 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|564288111|ref|YP_008874319.1| - 0.029 14.2 0.0 0.075 12.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glyco_tranf_2_3 PF13641.1 gi|564288112|ref|YP_008874320.1| - 1.4e-09 38.0 0.0 1.1e-08 35.1 0.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|564288112|ref|YP_008874320.1| - 3.2e-09 36.7 0.0 8.8e-09 35.2 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|564288112|ref|YP_008874320.1| - 4.8e-09 35.7 0.0 0.0063 15.6 0.0 3.0 3 0 0 3 3 3 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|564288112|ref|YP_008874320.1| - 5.1e-06 26.3 0.0 9.9e-06 25.3 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|564288112|ref|YP_008874320.1| - 9.9e-05 21.6 0.0 0.0054 16.0 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|564288112|ref|YP_008874320.1| - 0.00017 20.9 0.0 0.0003 20.1 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_5 PF13712.1 gi|564288112|ref|YP_008874320.1| - 0.049 12.8 0.0 4.1 6.5 0.0 2.2 1 1 0 2 2 2 0 Glycosyltransferase like family PTS_IIB PF02302.12 gi|564288113|ref|YP_008874321.1| - 8.5e-17 61.4 1.6 1.2e-16 60.9 1.1 1.2 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit VirionAssem_T7 PF11653.3 gi|564288113|ref|YP_008874321.1| - 0.034 14.8 6.7 0.1 13.3 1.4 2.1 1 1 1 2 2 2 0 Bacteriophage T7 virion assembly protein TrkA_N PF02254.13 gi|564288113|ref|YP_008874321.1| - 0.065 13.2 0.6 0.087 12.8 0.4 1.3 1 0 0 1 1 1 0 TrkA-N domain DUF1880 PF08976.6 gi|564288113|ref|YP_008874321.1| - 0.11 12.6 0.3 0.56 10.3 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1880) PEP-utilizers_C PF02896.13 gi|564288114|ref|YP_008874322.1| - 2.1e-104 348.5 0.0 2.8e-104 348.1 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.8 gi|564288114|ref|YP_008874322.1| - 8.3e-27 93.4 0.2 8.3e-27 93.4 0.1 2.4 4 0 0 4 4 4 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.18 gi|564288114|ref|YP_008874322.1| - 3.3e-24 84.2 0.4 7e-24 83.2 0.3 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.14 gi|564288115|ref|YP_008874323.1| - 2.1e-23 82.0 0.1 2.5e-23 81.7 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site DUF1902 PF08972.6 gi|564288115|ref|YP_008874323.1| - 0.14 11.7 0.9 12 5.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) PTS_EIIA_2 PF00359.17 gi|564288116|ref|YP_008874324.1| - 1.7e-34 118.6 0.0 2e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS_EIIC PF02378.13 gi|564288117|ref|YP_008874325.1| - 2.5e-23 82.4 38.9 2.5e-23 82.4 26.9 1.9 2 0 0 2 2 2 2 Phosphotransferase system, EIIC IncA PF04156.9 gi|564288118|ref|YP_008874326.1| - 1.8e-07 30.9 61.8 0.0034 16.9 6.7 4.1 1 1 2 4 4 4 3 IncA protein EzrA PF06160.7 gi|564288118|ref|YP_008874326.1| - 1.7e-06 26.5 31.2 0.0015 16.8 9.3 2.3 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA Seryl_tRNA_N PF02403.17 gi|564288118|ref|YP_008874326.1| - 8e-06 25.8 45.9 0.0029 17.6 5.1 6.1 2 2 4 6 6 6 3 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.1 gi|564288118|ref|YP_008874326.1| - 7e-05 21.5 31.2 0.0029 16.1 8.6 2.9 1 1 2 3 3 3 3 AAA domain TPR_MLP1_2 PF07926.7 gi|564288118|ref|YP_008874326.1| - 0.00023 20.9 38.0 0.07 12.8 4.0 4.8 2 2 2 4 4 4 3 TPR/MLP1/MLP2-like protein DUF342 PF03961.8 gi|564288118|ref|YP_008874326.1| - 0.0006 18.3 23.9 0.022 13.2 2.8 3.8 1 1 3 4 4 4 3 Protein of unknown function (DUF342) GAS PF13851.1 gi|564288118|ref|YP_008874326.1| - 0.00079 18.6 36.0 0.038 13.1 9.2 3.4 2 2 1 3 3 3 2 Growth-arrest specific micro-tubule binding Reo_sigmaC PF04582.7 gi|564288118|ref|YP_008874326.1| - 0.00094 18.4 16.0 0.079 12.1 1.1 3.6 1 1 1 3 3 3 2 Reovirus sigma C capsid protein MAD PF05557.8 gi|564288118|ref|YP_008874326.1| - 0.0012 17.0 47.4 0.045 11.8 12.5 3.5 2 2 1 3 3 3 3 Mitotic checkpoint protein COG2 PF06148.6 gi|564288118|ref|YP_008874326.1| - 0.0018 18.1 29.6 0.37 10.6 0.3 5.5 2 2 3 6 6 6 1 COG (conserved oligomeric Golgi) complex component, COG2 NPV_P10 PF05531.7 gi|564288118|ref|YP_008874326.1| - 0.0023 18.1 33.4 1.7 8.9 1.8 7.1 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein Cluap1 PF10234.4 gi|564288118|ref|YP_008874326.1| - 0.0054 15.9 2.3 0.0054 15.9 1.6 3.8 3 1 1 4 4 4 1 Clusterin-associated protein-1 Fib_alpha PF08702.5 gi|564288118|ref|YP_008874326.1| - 0.0064 16.6 25.3 1.7 8.7 4.4 4.2 4 0 0 4 4 4 2 Fibrinogen alpha/beta chain family ERM PF00769.14 gi|564288118|ref|YP_008874326.1| - 0.0064 16.0 14.5 0.0064 16.0 10.1 3.4 2 2 1 3 3 3 1 Ezrin/radixin/moesin family FUSC PF04632.7 gi|564288118|ref|YP_008874326.1| - 0.0091 14.4 24.9 0.047 12.1 4.7 2.3 2 0 0 2 2 2 2 Fusaric acid resistance protein family DivIC PF04977.10 gi|564288118|ref|YP_008874326.1| - 0.02 14.3 57.0 0.026 14.0 1.0 8.3 2 2 6 8 8 8 0 Septum formation initiator AAA_23 PF13476.1 gi|564288118|ref|YP_008874326.1| - 0.02 15.2 33.3 1.1e+04 -3.5 23.0 4.3 1 1 0 1 1 0 0 AAA domain AAA_27 PF13514.1 gi|564288118|ref|YP_008874326.1| - 0.02 12.5 50.8 1.1 6.8 35.2 2.9 1 1 0 1 1 1 0 AAA domain WEMBL PF05701.6 gi|564288118|ref|YP_008874326.1| - 0.024 13.0 40.5 0.12 10.8 28.0 2.0 1 1 0 1 1 1 0 Weak chloroplast movement under blue light TMF_DNA_bd PF12329.3 gi|564288118|ref|YP_008874326.1| - 0.033 13.9 40.4 0.15 11.9 1.4 6.4 2 2 2 5 5 5 0 TATA element modulatory factor 1 DNA binding Atg14 PF10186.4 gi|564288118|ref|YP_008874326.1| - 0.042 12.8 46.8 0.2 10.5 9.8 3.9 2 2 1 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 FliD_N PF02465.13 gi|564288118|ref|YP_008874326.1| - 0.047 14.0 6.3 3.9 7.9 0.4 4.4 2 2 2 4 4 4 0 Flagellar hook-associated protein 2 N-terminus Baculo_PEP_C PF04513.7 gi|564288118|ref|YP_008874326.1| - 0.053 13.3 27.9 0.12 12.1 1.6 5.4 2 2 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.16 gi|564288118|ref|YP_008874326.1| - 0.073 12.5 50.4 0.15 11.4 4.2 4.1 2 2 2 4 4 4 0 Intermediate filament protein MCPsignal PF00015.16 gi|564288118|ref|YP_008874326.1| - 0.074 12.5 19.5 0.2 11.1 2.8 3.3 2 2 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.4 gi|564288118|ref|YP_008874326.1| - 0.098 12.8 32.7 2.4 8.3 0.4 6.6 2 2 5 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|564288118|ref|YP_008874326.1| - 0.13 10.8 46.3 0.4 9.3 8.9 4.2 1 1 3 4 4 4 0 Spc7 kinetochore protein Mnd1 PF03962.10 gi|564288118|ref|YP_008874326.1| - 0.13 11.8 43.8 0.73 9.4 2.9 4.8 1 1 4 5 5 5 0 Mnd1 family Peptidase_C6 PF00851.13 gi|564288118|ref|YP_008874326.1| - 0.15 10.6 5.9 0.017 13.7 0.3 2.0 2 0 0 2 2 2 0 Helper component proteinase HlyD PF00529.15 gi|564288118|ref|YP_008874326.1| - 0.2 10.9 31.4 0.054 12.7 6.4 3.0 2 1 1 3 3 3 0 HlyD family secretion protein Shugoshin_N PF07558.6 gi|564288118|ref|YP_008874326.1| - 0.21 11.3 8.4 0.31 10.7 0.1 3.7 4 0 0 4 4 3 0 Shugoshin N-terminal coiled-coil region CENP-F_leu_zip PF10473.4 gi|564288118|ref|YP_008874326.1| - 0.29 11.0 54.1 2 8.2 7.5 5.4 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CALCOCO1 PF07888.6 gi|564288118|ref|YP_008874326.1| - 0.33 9.1 44.5 0.096 10.9 12.2 3.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Retrotrans_gag PF03732.12 gi|564288118|ref|YP_008874326.1| - 0.48 10.5 0.1 0.48 10.5 0.0 4.1 3 2 1 4 4 3 0 Retrotransposon gag protein Spectrin PF00435.16 gi|564288118|ref|YP_008874326.1| - 0.49 10.7 37.6 0.14 12.4 1.2 5.8 2 2 3 5 5 5 0 Spectrin repeat DUF3584 PF12128.3 gi|564288118|ref|YP_008874326.1| - 0.59 7.3 47.0 0.21 8.9 13.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF4200 PF13863.1 gi|564288118|ref|YP_008874326.1| - 0.64 9.9 50.0 0.21 11.5 4.3 5.8 2 2 1 5 5 5 0 Domain of unknown function (DUF4200) DUF972 PF06156.8 gi|564288118|ref|YP_008874326.1| - 0.66 10.3 33.3 1.6 9.0 2.1 5.1 2 2 2 4 4 4 0 Protein of unknown function (DUF972) Phage_GP20 PF06810.6 gi|564288118|ref|YP_008874326.1| - 0.75 9.2 32.6 0.17 11.3 2.9 4.8 3 2 1 4 4 4 0 Phage minor structural protein GP20 Prefoldin PF02996.12 gi|564288118|ref|YP_008874326.1| - 0.81 9.3 35.8 0.61 9.7 0.3 7.4 3 2 3 6 6 5 0 Prefoldin subunit TMF_TATA_bd PF12325.3 gi|564288118|ref|YP_008874326.1| - 0.91 9.2 53.9 0.8 9.4 5.1 4.6 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding FlaC_arch PF05377.6 gi|564288118|ref|YP_008874326.1| - 0.92 9.4 33.9 0.74 9.7 1.3 6.9 5 3 3 8 8 7 0 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|564288118|ref|YP_008874326.1| - 1 9.2 61.0 0.074 12.8 10.1 4.2 2 2 2 4 4 3 0 Tropomyosin like FlxA PF14282.1 gi|564288118|ref|YP_008874326.1| - 1.1 9.2 23.8 2 8.4 0.4 4.9 2 2 1 4 4 3 0 FlxA-like protein ATG16 PF08614.6 gi|564288118|ref|YP_008874326.1| - 2 8.1 55.8 2.5 7.9 6.9 4.7 1 1 2 4 4 4 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.7 gi|564288118|ref|YP_008874326.1| - 2.2 8.0 30.0 0.099 12.3 3.8 3.8 2 2 2 4 4 4 0 Laminin Domain II DUF812 PF05667.6 gi|564288118|ref|YP_008874326.1| - 2.6 6.4 41.2 5.4 5.4 10.1 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF812) Fez1 PF06818.10 gi|564288118|ref|YP_008874326.1| - 2.6 8.0 43.1 5.1 7.0 13.4 3.1 2 2 0 2 2 2 0 Fez1 Prefoldin_2 PF01920.15 gi|564288118|ref|YP_008874326.1| - 3.6 7.3 44.9 3.1 7.6 1.7 6.7 2 2 3 5 5 5 0 Prefoldin subunit OmpH PF03938.9 gi|564288118|ref|YP_008874326.1| - 4.3 7.2 31.3 39 4.1 8.8 3.5 2 2 0 2 2 2 0 Outer membrane protein (OmpH-like) APG6 PF04111.7 gi|564288118|ref|YP_008874326.1| - 5.5 5.9 49.8 0.38 9.7 12.1 4.2 2 2 3 5 5 5 0 Autophagy protein Apg6 Baculo_p24 PF05073.7 gi|564288118|ref|YP_008874326.1| - 7.6 6.0 11.8 2 7.9 0.9 3.1 2 1 0 2 2 2 0 Baculovirus P24 capsid protein DUF2730 PF10805.3 gi|564288118|ref|YP_008874326.1| - 7.9 6.2 29.0 0.75 9.5 1.1 5.1 3 2 1 4 4 4 0 Protein of unknown function (DUF2730) zinc_ribbon_5 PF13719.1 gi|564288119|ref|YP_008874327.1| - 0.061 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|564288119|ref|YP_008874327.1| - 0.084 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF4556 PF15094.1 gi|564288119|ref|YP_008874327.1| - 0.14 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4556) DAO PF01266.19 gi|564288122|ref|YP_008874330.1| - 7.6e-56 189.5 0.1 7.6e-56 189.5 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|564288122|ref|YP_008874330.1| - 1.6e-50 171.4 0.0 2.8e-50 170.6 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|564288122|ref|YP_008874330.1| - 4.7e-11 42.5 0.0 1.3e-10 41.1 0.0 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|564288122|ref|YP_008874330.1| - 1.7e-05 24.6 0.0 3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family NAD_binding_9 PF13454.1 gi|564288122|ref|YP_008874330.1| - 5.3e-05 23.0 0.8 0.94 9.2 0.1 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|564288122|ref|YP_008874330.1| - 0.00011 22.2 0.0 0.37 10.6 0.0 2.7 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|564288122|ref|YP_008874330.1| - 0.0024 17.8 0.0 0.0081 16.1 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|564288122|ref|YP_008874330.1| - 0.004 17.2 0.0 0.014 15.4 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|564288122|ref|YP_008874330.1| - 0.012 14.1 0.0 0.025 13.0 0.0 1.5 1 0 0 1 1 1 0 HI0933-like protein ThiF PF00899.16 gi|564288122|ref|YP_008874330.1| - 0.012 15.3 0.1 0.046 13.5 0.0 1.9 2 0 0 2 2 2 0 ThiF family FAD_binding_3 PF01494.14 gi|564288122|ref|YP_008874330.1| - 0.038 13.0 0.1 0.071 12.1 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain ETF PF01012.16 gi|564288123|ref|YP_008874331.1| - 1.7e-29 102.6 2.2 2.6e-29 102.0 1.5 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|564288124|ref|YP_008874332.1| - 1.4e-31 107.8 0.5 1.4e-31 107.8 0.3 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|564288124|ref|YP_008874332.1| - 1.3e-26 93.2 2.1 1.3e-26 93.2 1.5 2.3 2 1 1 3 3 3 1 Electron transfer flavoprotein domain Cupin_2 PF07883.6 gi|564288125|ref|YP_008874333.1| - 0.001 18.5 3.6 0.0014 18.1 2.5 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|564288125|ref|YP_008874333.1| - 0.0052 16.2 0.1 0.0096 15.3 0.0 1.5 1 1 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|564288125|ref|YP_008874333.1| - 0.08 12.8 0.1 0.14 12.0 0.0 1.5 1 1 0 1 1 1 0 ChrR Cupin-like domain FTCD_C PF04961.7 gi|564288126|ref|YP_008874334.1| - 9.3e-47 158.8 9.7 1.2e-46 158.5 6.7 1.1 1 0 0 1 1 1 1 Formiminotransferase-cyclodeaminase ThiW PF09512.5 gi|564288126|ref|YP_008874334.1| - 0.086 12.6 1.2 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) FTHFS PF01268.14 gi|564288127|ref|YP_008874335.1| - 3e-242 804.5 0.0 3.4e-242 804.3 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Pterin_bind PF00809.17 gi|564288128|ref|YP_008874336.1| - 8.2e-72 240.9 0.2 1.4e-71 240.2 0.1 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|564288128|ref|YP_008874336.1| - 1e-13 51.7 0.0 1.8e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|564288128|ref|YP_008874336.1| - 1.4e-06 28.2 0.0 4.4e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain FixQ PF05545.6 gi|564288129|ref|YP_008874337.1| - 0.12 12.0 0.2 0.17 11.5 0.2 1.2 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ zinc-ribbons_6 PF07191.7 gi|564288130|ref|YP_008874338.1| - 0.03 14.1 7.7 0.21 11.4 0.4 2.5 2 1 0 2 2 2 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|564288130|ref|YP_008874338.1| - 0.042 13.4 7.9 0.44 10.2 0.2 2.5 2 1 0 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|564288130|ref|YP_008874338.1| - 0.086 12.5 8.7 0.65 9.7 1.1 2.8 1 1 3 4 4 4 0 Hydrogenase expression/synthesis hypA family zf-piccolo PF05715.8 gi|564288130|ref|YP_008874338.1| - 0.11 12.5 2.6 0.15 12.1 0.1 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger zinc_ribbon_5 PF13719.1 gi|564288130|ref|YP_008874338.1| - 0.14 11.7 8.1 16 5.1 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-CHY PF05495.7 gi|564288130|ref|YP_008874338.1| - 0.18 12.0 5.6 0.11 12.6 1.0 2.0 1 1 1 2 2 2 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|564288130|ref|YP_008874338.1| - 0.29 11.1 11.5 4.3 7.3 3.2 3.8 3 1 1 4 4 4 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|564288130|ref|YP_008874338.1| - 0.29 11.4 10.5 3.4e+02 1.6 7.3 2.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|564288130|ref|YP_008874338.1| - 0.34 10.2 6.5 0.8 9.0 0.4 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding YdjO PF14169.1 gi|564288130|ref|YP_008874338.1| - 0.44 10.0 6.3 0.38 10.2 0.2 2.8 1 1 2 3 3 3 0 Cold-inducible protein YdjO IBR PF01485.16 gi|564288130|ref|YP_008874338.1| - 0.65 9.9 9.0 2.9e+02 1.4 6.2 2.4 1 1 0 1 1 1 0 IBR domain zinc_ribbon_4 PF13717.1 gi|564288130|ref|YP_008874338.1| - 0.7 9.6 8.8 23 4.7 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain GCC2_GCC3 PF07699.8 gi|564288130|ref|YP_008874338.1| - 1.1 8.8 4.6 0.46 10.1 0.7 2.1 2 0 0 2 2 2 0 GCC2 and GCC3 TerY-C PF15616.1 gi|564288130|ref|YP_008874338.1| - 1.2 9.0 4.8 7.5 6.4 1.5 2.6 1 1 1 2 2 2 0 TerY-C metal binding domain DnaJ_CXXCXGXG PF00684.14 gi|564288130|ref|YP_008874338.1| - 1.5 8.9 4.5 17 5.5 3.2 2.3 1 1 0 1 1 1 0 DnaJ central domain DZR PF12773.2 gi|564288130|ref|YP_008874338.1| - 1.7 8.5 10.2 1.4 8.7 1.2 2.7 1 1 1 2 2 2 0 Double zinc ribbon Zn_Tnp_IS1 PF03811.8 gi|564288130|ref|YP_008874338.1| - 2.2 7.8 16.4 0.83 9.2 0.2 3.6 3 1 0 3 3 3 0 InsA N-terminal domain DUF329 PF03884.9 gi|564288130|ref|YP_008874338.1| - 7.5 6.1 9.9 15 5.1 0.2 3.6 3 1 1 4 4 4 0 Domain of unknown function (DUF329) MFS_1 PF07690.11 gi|564288131|ref|YP_008874339.1| - 0.0065 15.2 12.7 0.0065 15.2 8.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF21 PF01595.15 gi|564288131|ref|YP_008874339.1| - 1.4 8.1 10.3 0.42 9.8 5.1 1.6 1 1 0 2 2 2 0 Domain of unknown function DUF21 BCCT PF02028.12 gi|564288132|ref|YP_008874340.1| - 1.7e-178 593.8 48.0 2e-178 593.6 33.3 1.0 1 0 0 1 1 1 1 BCCT family transporter Usp PF00582.21 gi|564288134|ref|YP_008874342.1| - 7.2e-30 104.0 0.0 8.5e-30 103.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|564288134|ref|YP_008874342.1| - 0.00087 18.6 0.3 0.0011 18.3 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PALP PF00291.20 gi|564288135|ref|YP_008874343.1| - 3.3e-76 256.4 5.4 4.3e-76 256.0 3.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|564288135|ref|YP_008874343.1| - 7.7e-09 34.8 2.0 1.3e-08 34.1 0.2 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|564288135|ref|YP_008874343.1| - 1.3e-05 25.4 0.7 3e-05 24.2 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|564288135|ref|YP_008874343.1| - 0.012 15.3 0.0 0.029 14.0 0.0 1.7 1 0 0 1 1 1 0 ACT domain GCV_T PF01571.16 gi|564288136|ref|YP_008874344.1| - 5.2e-60 202.4 0.0 7.6e-60 201.8 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.19 gi|564288136|ref|YP_008874344.1| - 1.8e-53 181.7 0.7 3e-53 180.9 0.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.6 gi|564288136|ref|YP_008874344.1| - 7e-20 70.8 0.0 3e-19 68.8 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_3 PF13738.1 gi|564288136|ref|YP_008874344.1| - 3.4e-07 30.5 0.0 2.6e-06 27.6 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SoxG PF04268.7 gi|564288136|ref|YP_008874344.1| - 4.5e-06 26.5 0.0 0.00012 21.9 0.0 2.5 2 1 1 3 3 2 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.1 gi|564288136|ref|YP_008874344.1| - 1.9e-05 24.5 0.1 7.1e-05 22.7 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|564288136|ref|YP_008874344.1| - 3.3e-05 22.9 0.0 7.4e-05 21.7 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain ThiF PF00899.16 gi|564288136|ref|YP_008874344.1| - 0.00042 20.1 0.1 0.00074 19.3 0.1 1.4 1 0 0 1 1 1 1 ThiF family Pyr_redox_2 PF07992.9 gi|564288136|ref|YP_008874344.1| - 0.00054 19.9 0.1 0.013 15.4 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|564288136|ref|YP_008874344.1| - 0.00082 18.8 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|564288136|ref|YP_008874344.1| - 0.002 18.5 0.4 0.0071 16.7 0.2 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|564288136|ref|YP_008874344.1| - 0.0043 17.1 0.0 0.0094 16.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GMC_oxred_N PF00732.14 gi|564288136|ref|YP_008874344.1| - 0.0068 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Lycopene_cycl PF05834.7 gi|564288136|ref|YP_008874344.1| - 0.012 14.4 0.3 0.021 13.7 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|564288136|ref|YP_008874344.1| - 0.017 14.8 0.1 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|564288136|ref|YP_008874344.1| - 0.056 11.9 0.2 2 6.8 0.2 2.2 2 0 0 2 2 2 0 HI0933-like protein TrkA_N PF02254.13 gi|564288136|ref|YP_008874344.1| - 0.071 13.1 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Thi4 PF01946.12 gi|564288136|ref|YP_008874344.1| - 0.15 11.1 0.0 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 Thi4 family DAO PF01266.19 gi|564288137|ref|YP_008874345.1| - 1.9e-68 230.9 0.3 3.4e-68 230.1 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|564288137|ref|YP_008874345.1| - 6.2e-66 221.7 0.0 1e-65 221.0 0.0 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|564288137|ref|YP_008874345.1| - 1.1e-15 57.3 0.0 3.6e-15 55.7 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|564288137|ref|YP_008874345.1| - 2.8e-07 30.5 0.0 5.3e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family Pyr_redox_3 PF13738.1 gi|564288137|ref|YP_008874345.1| - 3.5e-06 27.2 0.3 0.00013 22.0 0.2 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|564288137|ref|YP_008874345.1| - 3.8e-05 22.7 0.3 3.8e-05 22.7 0.2 2.3 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.1 gi|564288137|ref|YP_008874345.1| - 5.2e-05 23.1 0.0 0.00023 21.1 0.0 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|564288137|ref|YP_008874345.1| - 0.0009 19.5 0.4 0.01 16.2 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|564288137|ref|YP_008874345.1| - 0.0022 17.8 0.1 0.0056 16.4 0.1 1.7 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.1 gi|564288137|ref|YP_008874345.1| - 0.0043 16.8 0.3 0.27 10.9 0.0 2.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|564288137|ref|YP_008874345.1| - 0.008 16.1 0.1 0.051 13.5 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|564288137|ref|YP_008874345.1| - 0.027 13.9 0.1 0.051 13.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.7 gi|564288137|ref|YP_008874345.1| - 0.033 13.0 2.2 0.047 12.5 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.14 gi|564288137|ref|YP_008874345.1| - 0.038 13.1 0.0 0.07 12.2 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase Thi4 PF01946.12 gi|564288137|ref|YP_008874345.1| - 0.04 13.0 0.4 2.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Thi4 family Pyr_redox_2 PF07992.9 gi|564288137|ref|YP_008874345.1| - 0.042 13.7 0.1 0.21 11.4 0.1 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|564288137|ref|YP_008874345.1| - 0.048 12.1 0.3 0.42 9.0 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein DUF22 PF01629.11 gi|564288137|ref|YP_008874345.1| - 0.079 12.4 0.1 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF22 AstE_AspA PF04952.9 gi|564288138|ref|YP_008874346.1| - 8.2e-41 139.7 0.1 9.5e-41 139.5 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|564288138|ref|YP_008874346.1| - 0.041 13.4 0.0 0.076 12.6 0.0 1.6 1 1 0 1 1 1 0 Zinc carboxypeptidase MTHFR PF02219.12 gi|564288140|ref|YP_008874348.1| - 1.5e-13 50.5 0.0 3.4e-13 49.3 0.0 1.6 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase GcpE PF04551.9 gi|564288140|ref|YP_008874348.1| - 0.096 11.4 0.0 0.19 10.5 0.0 1.4 2 0 0 2 2 2 0 GcpE protein GCV_T PF01571.16 gi|564288141|ref|YP_008874349.1| - 1.6e-40 138.7 0.0 2.3e-40 138.2 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|564288141|ref|YP_008874349.1| - 3.5e-09 36.5 0.0 7.5e-09 35.4 0.0 1.7 1 1 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DHFR_1 PF00186.14 gi|564288142|ref|YP_008874350.1| - 4.4e-50 169.4 0.0 5.1e-50 169.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase TctA PF01970.11 gi|564288143|ref|YP_008874351.1| - 0.0038 15.6 1.8 0.0039 15.6 1.2 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HTH_10 PF04967.7 gi|564288144|ref|YP_008874352.1| - 3.2e-16 58.6 0.0 5.3e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|564288144|ref|YP_008874352.1| - 0.0064 15.8 0.0 0.014 14.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|564288144|ref|YP_008874352.1| - 0.0067 15.7 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|564288144|ref|YP_008874352.1| - 0.062 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.7 gi|564288144|ref|YP_008874352.1| - 0.064 12.7 0.0 0.57 9.6 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|564288144|ref|YP_008874352.1| - 0.071 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MFS_1 PF07690.11 gi|564288145|ref|YP_008874354.1| - 6.9e-46 156.5 63.4 5.9e-37 127.1 28.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily UNC-93 PF05978.11 gi|564288145|ref|YP_008874354.1| - 0.025 14.0 0.4 0.025 14.0 0.3 2.0 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 EutH PF04346.7 gi|564288145|ref|YP_008874354.1| - 0.04 12.8 7.3 0.077 11.9 0.4 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation protein, EutH Sugar_tr PF00083.19 gi|564288145|ref|YP_008874354.1| - 0.38 9.2 29.6 0.004 15.7 6.6 2.4 2 1 0 2 2 2 0 Sugar (and other) transporter DUF2427 PF10348.4 gi|564288145|ref|YP_008874354.1| - 0.45 10.1 3.0 0.23 11.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) Aldedh PF00171.17 gi|564288309|ref|YP_008874355.1| - 5e-12 44.9 0.0 5.3e-12 44.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PE PF00934.15 gi|564288309|ref|YP_008874355.1| - 0.038 14.0 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 PE family IclR PF01614.13 gi|564288146|ref|YP_008874356.1| - 6.2e-32 110.0 0.0 7.5e-31 106.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|564288146|ref|YP_008874356.1| - 1.4e-09 37.4 0.1 7e-09 35.1 0.0 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|564288146|ref|YP_008874356.1| - 9.6e-06 25.1 0.0 3e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|564288146|ref|YP_008874356.1| - 3.2e-05 23.4 0.0 0.00012 21.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|564288146|ref|YP_008874356.1| - 4.6e-05 23.1 0.0 0.00016 21.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|564288146|ref|YP_008874356.1| - 9.3e-05 22.0 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|564288146|ref|YP_008874356.1| - 0.00016 21.2 0.0 0.00051 19.6 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|564288146|ref|YP_008874356.1| - 0.0037 16.9 0.0 0.0078 15.8 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator Rrf2 PF02082.15 gi|564288146|ref|YP_008874356.1| - 0.0075 16.3 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|564288146|ref|YP_008874356.1| - 0.017 14.4 0.0 0.045 13.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|564288146|ref|YP_008874356.1| - 0.04 13.8 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Diacid_rec PF05651.8 gi|564288146|ref|YP_008874356.1| - 0.049 13.0 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative sugar diacid recognition DUF742 PF05331.6 gi|564288146|ref|YP_008874356.1| - 0.07 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) B-block_TFIIIC PF04182.7 gi|564288146|ref|YP_008874356.1| - 0.092 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC ABC_tran PF00005.22 gi|564288147|ref|YP_008874357.1| - 2.4e-32 112.0 0.0 4.2e-32 111.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|564288147|ref|YP_008874357.1| - 1.6e-10 40.8 0.2 5.6e-10 39.0 0.0 2.1 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.1 gi|564288147|ref|YP_008874357.1| - 3.1e-08 33.9 0.0 1.9e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|564288147|ref|YP_008874357.1| - 4.9e-07 29.7 0.9 1.4e-05 25.1 0.0 3.1 3 1 0 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|564288147|ref|YP_008874357.1| - 2.7e-05 23.5 0.5 0.0001 21.6 0.3 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|564288147|ref|YP_008874357.1| - 0.00048 20.1 0.1 0.001 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|564288147|ref|YP_008874357.1| - 0.0013 18.9 0.3 0.0032 17.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|564288147|ref|YP_008874357.1| - 0.0014 17.8 0.1 0.0027 16.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|564288147|ref|YP_008874357.1| - 0.0015 17.6 0.0 0.011 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|564288147|ref|YP_008874357.1| - 0.0045 16.4 0.0 0.007 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|564288147|ref|YP_008874357.1| - 0.0064 16.3 0.8 0.014 15.2 0.5 1.8 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|564288147|ref|YP_008874357.1| - 0.0071 15.0 0.1 0.016 13.9 0.1 1.6 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|564288147|ref|YP_008874357.1| - 0.0089 16.8 0.6 0.027 15.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|564288147|ref|YP_008874357.1| - 0.013 15.8 0.0 0.13 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|564288147|ref|YP_008874357.1| - 0.021 14.2 0.0 0.25 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|564288147|ref|YP_008874357.1| - 0.024 14.8 0.9 0.15 12.2 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|564288147|ref|YP_008874357.1| - 0.026 14.0 0.0 0.056 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|564288147|ref|YP_008874357.1| - 0.028 14.9 0.2 0.14 12.6 0.0 2.0 2 0 0 2 2 2 0 Miro-like protein AAA_28 PF13521.1 gi|564288147|ref|YP_008874357.1| - 0.03 14.2 0.5 0.14 12.1 0.0 2.3 3 0 0 3 3 2 0 AAA domain Zeta_toxin PF06414.7 gi|564288147|ref|YP_008874357.1| - 0.034 13.2 0.1 0.099 11.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|564288147|ref|YP_008874357.1| - 0.041 14.2 0.0 0.092 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|564288147|ref|YP_008874357.1| - 0.061 13.0 0.1 0.18 11.5 0.1 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|564288147|ref|YP_008874357.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|564288147|ref|YP_008874357.1| - 0.078 12.6 0.1 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|564288147|ref|YP_008874357.1| - 0.087 12.7 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|564288147|ref|YP_008874357.1| - 0.087 12.5 0.5 0.38 10.4 0.0 2.2 3 0 0 3 3 2 0 NTPase Arch_ATPase PF01637.13 gi|564288147|ref|YP_008874357.1| - 0.094 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|564288147|ref|YP_008874357.1| - 0.11 11.2 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|564288147|ref|YP_008874357.1| - 0.16 12.1 0.0 0.57 10.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Creatininase PF02633.9 gi|564288148|ref|YP_008874358.1| - 1.8e-65 220.3 0.4 2e-65 220.1 0.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase SBP_bac_1 PF01547.20 gi|564288149|ref|YP_008874359.1| - 3.5e-41 141.9 0.1 5.1e-41 141.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|564288149|ref|YP_008874359.1| - 2e-35 122.9 0.1 2.9e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|564288149|ref|YP_008874359.1| - 8.2e-05 22.0 0.1 0.35 10.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|564288149|ref|YP_008874359.1| - 0.00035 20.2 0.0 0.00077 19.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|564288149|ref|YP_008874359.1| - 0.092 12.8 0.3 0.092 12.8 0.2 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|564288150|ref|YP_008874360.1| - 9.6e-21 74.1 15.9 9.6e-21 74.1 11.0 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2189 PF09955.4 gi|564288150|ref|YP_008874360.1| - 1.1 9.2 8.2 2.4 8.1 4.8 2.2 2 1 0 2 2 2 0 Predicted integral membrane protein (DUF2189) DUF485 PF04341.7 gi|564288150|ref|YP_008874360.1| - 1.2 8.9 7.1 19 5.0 0.3 3.6 3 0 0 3 3 3 0 Protein of unknown function, DUF485 BPD_transp_1 PF00528.17 gi|564288151|ref|YP_008874361.1| - 6.4e-16 58.3 18.4 6.4e-16 58.3 12.7 1.8 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component MR_MLE_C PF13378.1 gi|564288153|ref|YP_008874363.1| - 1.3e-20 73.3 0.1 2.3e-18 66.1 0.1 2.4 2 0 0 2 2 2 2 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|564288153|ref|YP_008874363.1| - 1.4e-16 60.5 0.0 4e-16 59.0 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|564288153|ref|YP_008874363.1| - 5.2e-15 55.7 0.2 1.5e-14 54.2 0.2 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain adh_short_C2 PF13561.1 gi|564288154|ref|YP_008874364.1| - 8.8e-36 123.8 0.0 1.1e-35 123.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|564288154|ref|YP_008874364.1| - 3.8e-32 111.5 0.6 5e-32 111.1 0.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|564288154|ref|YP_008874364.1| - 3.6e-12 46.3 0.5 5.4e-12 45.7 0.4 1.3 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|564288154|ref|YP_008874364.1| - 6.2e-05 23.0 0.2 0.00012 22.2 0.2 1.5 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|564288154|ref|YP_008874364.1| - 6.9e-05 22.4 0.7 0.00018 21.0 0.5 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.15 gi|564288154|ref|YP_008874364.1| - 0.029 14.4 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|564288154|ref|YP_008874364.1| - 0.046 13.3 0.8 0.077 12.6 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|564288154|ref|YP_008874364.1| - 0.068 13.5 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent RmlD_sub_bind PF04321.12 gi|564288154|ref|YP_008874364.1| - 0.075 11.9 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|564288154|ref|YP_008874364.1| - 0.095 11.5 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Ribonuc_L-PSP PF01042.16 gi|564288155|ref|YP_008874365.1| - 1.3e-41 141.1 0.0 1.4e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HAD PF12710.2 gi|564288156|ref|YP_008874366.1| - 3.7e-11 43.5 0.0 5.1e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|564288156|ref|YP_008874366.1| - 8.8e-07 29.2 0.0 1.3e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|564288156|ref|YP_008874366.1| - 3.7e-06 27.5 0.2 0.00057 20.3 0.0 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase UMPH-1 PF05822.7 gi|564288156|ref|YP_008874366.1| - 0.08 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) EamA PF00892.15 gi|564288157|ref|YP_008874367.1| - 1.7e-28 99.1 27.0 3.2e-14 53.0 9.6 2.4 2 1 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.7 gi|564288157|ref|YP_008874367.1| - 0.0075 15.8 0.9 0.0075 15.8 0.7 4.1 1 1 2 4 4 4 1 Positive regulator of sigma(E), RseC/MucC EmrE PF13536.1 gi|564288157|ref|YP_008874367.1| - 0.012 15.8 6.9 0.012 15.8 4.8 3.8 2 2 2 4 4 4 0 Multidrug resistance efflux transporter DUF2673 PF10880.3 gi|564288157|ref|YP_008874367.1| - 0.12 12.4 0.7 0.32 11.0 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2673) TPT PF03151.11 gi|564288157|ref|YP_008874367.1| - 5.6 6.5 24.5 0.41 10.2 8.3 2.3 2 0 0 2 2 2 0 Triose-phosphate Transporter family SDF PF00375.13 gi|564288158|ref|YP_008874368.1| - 1.1e-113 379.9 37.8 1.3e-113 379.7 26.2 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family EMP70 PF02990.11 gi|564288158|ref|YP_008874368.1| - 0.49 8.7 9.3 0.58 8.5 2.7 2.2 2 0 0 2 2 2 0 Endomembrane protein 70 Hexapep PF00132.19 gi|564288159|ref|YP_008874369.1| - 8.6e-12 44.0 7.1 2.2e-07 30.0 2.2 3.2 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|564288159|ref|YP_008874369.1| - 0.00016 21.8 0.0 0.00028 21.0 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|564288159|ref|YP_008874369.1| - 0.0014 18.1 1.5 0.0014 18.1 1.0 2.6 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Zn-ribbon_8 PF09723.5 gi|564288160|ref|YP_008874370.1| - 0.0077 16.1 0.7 0.041 13.8 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DUF3268 PF11672.3 gi|564288160|ref|YP_008874370.1| - 0.025 14.6 1.8 0.033 14.2 0.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zf-ribbon_3 PF13248.1 gi|564288160|ref|YP_008874370.1| - 0.11 11.7 0.1 0.11 11.7 0.0 1.8 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|564288160|ref|YP_008874370.1| - 0.11 11.8 2.2 0.31 10.3 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|564288160|ref|YP_008874370.1| - 0.32 11.0 4.0 27 4.8 2.8 2.7 1 1 0 1 1 1 0 zinc-finger THF_DHG_CYH_C PF02882.14 gi|564288161|ref|YP_008874371.1| - 2.2e-66 221.9 1.5 2.9e-66 221.4 1.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|564288161|ref|YP_008874371.1| - 1.9e-35 121.4 0.0 2.9e-35 120.8 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Chorismate_bind PF00425.13 gi|564288162|ref|YP_008874372.1| - 1.8e-98 328.9 0.0 5e-98 327.5 0.0 1.7 2 1 1 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|564288162|ref|YP_008874372.1| - 5.2e-15 55.6 0.0 1.4e-14 54.2 0.0 1.8 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|564288163|ref|YP_008874373.1| - 4.8e-48 163.1 0.0 5.4e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|564288163|ref|YP_008874373.1| - 5.9e-08 32.4 0.3 1.3e-07 31.2 0.2 1.5 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.13 gi|564288163|ref|YP_008874373.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein BCCT PF02028.12 gi|564288164|ref|YP_008874374.1| - 1e-129 432.9 45.6 1.3e-129 432.5 31.6 1.1 1 0 0 1 1 1 1 BCCT family transporter Pox_A9 PF04835.7 gi|564288164|ref|YP_008874374.1| - 0.0078 16.0 1.2 0.082 12.8 0.0 2.6 2 0 0 2 2 2 1 A9 protein conserved region TrkA_N PF02254.13 gi|564288165|ref|YP_008874375.1| - 8.9e-27 93.3 2.0 1.5e-26 92.7 1.4 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|564288165|ref|YP_008874375.1| - 1.3e-13 50.4 7.5 1.3e-13 50.4 5.2 3.0 4 1 0 4 4 4 1 Ion channel ADH_zinc_N PF00107.21 gi|564288165|ref|YP_008874375.1| - 0.011 15.3 0.1 0.061 12.8 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Ion_trans PF00520.26 gi|564288165|ref|YP_008874375.1| - 0.046 12.9 0.6 0.09 12.0 0.5 1.4 1 0 0 1 1 1 0 Ion transport protein NAD_binding_7 PF13241.1 gi|564288165|ref|YP_008874375.1| - 0.46 10.7 3.1 0.15 12.3 0.2 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding EamA PF00892.15 gi|564288166|ref|YP_008874376.1| - 6.1e-11 42.4 16.1 7.7e-11 42.1 11.2 1.1 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|564288166|ref|YP_008874376.1| - 0.21 11.2 15.4 0.37 10.4 10.6 1.5 1 1 0 1 1 1 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|564288166|ref|YP_008874376.1| - 0.85 9.8 19.4 2.5 8.3 13.4 1.8 1 1 0 1 1 1 0 Multidrug resistance efflux transporter DUF1129 PF06570.6 gi|564288166|ref|YP_008874376.1| - 2.7 7.2 7.3 5.7 6.1 0.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Ribonuc_L-PSP PF01042.16 gi|564288167|ref|YP_008874377.1| - 1.5e-37 128.0 0.0 1.7e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|564288167|ref|YP_008874377.1| - 0.012 15.4 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease Complex1_51K PF01512.12 gi|564288169|ref|YP_008874379.1| - 1.1e-16 60.8 0.0 1.8e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|564288169|ref|YP_008874379.1| - 3.8e-09 35.5 0.0 1e-08 34.2 0.0 1.8 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SLBB PF10531.4 gi|564288169|ref|YP_008874379.1| - 0.0069 16.2 0.1 0.18 11.7 0.0 2.7 2 0 0 2 2 2 1 SLBB domain DrsE PF02635.10 gi|564288169|ref|YP_008874379.1| - 0.048 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 DsrE/DsrF-like family FIST_C PF10442.4 gi|564288169|ref|YP_008874379.1| - 0.09 12.7 0.3 1 9.2 0.0 2.3 2 0 0 2 2 2 0 FIST C domain HMA PF00403.21 gi|564288169|ref|YP_008874379.1| - 0.1 12.7 0.9 2.4 8.3 0.0 3.0 3 0 0 3 3 3 0 Heavy-metal-associated domain Molybdopterin PF00384.17 gi|564288170|ref|YP_008874380.1| - 5.2e-83 279.1 0.0 6.4e-83 278.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|564288170|ref|YP_008874380.1| - 3.7e-34 116.8 0.0 6.5e-34 116.0 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|564288170|ref|YP_008874380.1| - 1.4e-26 92.0 0.2 3.1e-26 90.9 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|564288170|ref|YP_008874380.1| - 3.6e-14 51.7 0.5 3.6e-14 51.7 0.4 2.3 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|564288170|ref|YP_008874380.1| - 8.9e-10 38.2 0.1 3.1e-09 36.5 0.1 2.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.2 gi|564288170|ref|YP_008874380.1| - 3.1e-08 33.8 9.1 3.1e-08 33.8 6.3 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|564288170|ref|YP_008874380.1| - 3.1e-08 33.3 8.8 3.1e-08 33.3 6.1 2.9 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|564288170|ref|YP_008874380.1| - 1.3e-07 31.3 9.2 1.3e-07 31.3 6.4 3.2 3 2 0 3 3 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|564288170|ref|YP_008874380.1| - 3.4e-07 29.5 20.7 0.00015 21.2 0.7 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|564288170|ref|YP_008874380.1| - 1.8e-06 27.8 8.1 1.8e-06 27.8 5.6 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|564288170|ref|YP_008874380.1| - 2.8e-06 27.9 6.4 0.0031 18.2 0.1 4.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|564288170|ref|YP_008874380.1| - 3.3e-06 26.7 12.3 2.1e-05 24.1 2.0 4.2 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|564288170|ref|YP_008874380.1| - 0.00024 21.3 13.6 0.00024 21.3 9.4 3.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|564288170|ref|YP_008874380.1| - 0.00076 19.2 3.1 0.00076 19.2 2.1 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|564288170|ref|YP_008874380.1| - 0.0016 18.9 12.7 0.026 15.1 0.6 4.3 5 0 0 5 5 3 2 4Fe-4S single cluster domain CDC48_N PF02359.13 gi|564288170|ref|YP_008874380.1| - 0.068 13.1 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain NIPSNAP PF07978.8 gi|564288170|ref|YP_008874380.1| - 0.073 13.0 0.0 0.23 11.4 0.0 1.9 1 0 0 1 1 1 0 NIPSNAP Fer4_18 PF13746.1 gi|564288170|ref|YP_008874380.1| - 0.11 12.9 21.7 0.088 13.2 2.5 3.3 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|564288170|ref|YP_008874380.1| - 0.84 10.0 15.3 2.3 8.6 2.7 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Creatininase PF02633.9 gi|564288171|ref|YP_008874381.1| - 7.7e-72 241.2 2.4 8.7e-72 241.0 1.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Abi PF02517.11 gi|564288172|ref|YP_008874382.1| - 2.5e-11 43.5 22.3 3.3e-11 43.1 12.6 2.9 2 1 0 2 2 2 1 CAAX protease self-immunity Peptidase_S8 PF00082.17 gi|564288310|ref|YP_008874383.1| - 3.5e-19 69.0 2.9 4.3e-15 55.6 0.0 2.2 2 0 0 2 2 2 2 Subtilase family HTH_20 PF12840.2 gi|564288173|ref|YP_008874384.1| - 5.5e-14 51.7 0.0 9.2e-14 50.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|564288173|ref|YP_008874384.1| - 1.7e-06 27.6 0.0 3.1e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|564288173|ref|YP_008874384.1| - 4.6e-06 25.9 0.0 7.4e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|564288173|ref|YP_008874384.1| - 0.076 12.6 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF1312 PF07009.6 gi|564288174|ref|YP_008874385.1| - 0.0048 16.6 0.0 0.59 9.9 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF1312) YpM PF09144.5 gi|564288174|ref|YP_008874385.1| - 0.0067 16.3 0.2 0.16 11.9 0.1 2.4 2 0 0 2 2 2 1 Yersinia pseudotuberculosis mitogen PRC PF05239.11 gi|564288175|ref|YP_008874386.1| - 1.6e-09 37.5 0.0 1.9e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain CopD PF05425.8 gi|564288312|ref|YP_008874388.1| - 0.00048 20.3 20.1 0.006 16.7 7.1 2.3 1 1 1 2 2 2 2 Copper resistance protein D Frag1 PF10277.4 gi|564288312|ref|YP_008874388.1| - 0.11 12.0 1.5 0.16 11.3 0.3 1.6 1 1 1 2 2 2 0 Frag1/DRAM/Sfk1 family DUF4149 PF13664.1 gi|564288312|ref|YP_008874388.1| - 0.11 12.6 10.0 0.1 12.6 4.8 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) Fe_dep_repress PF01325.14 gi|564288176|ref|YP_008874389.1| - 1.2e-14 53.9 0.1 1.7e-14 53.4 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|564288176|ref|YP_008874389.1| - 2.3e-06 27.1 0.0 3.9e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|564288176|ref|YP_008874389.1| - 5.9e-06 26.5 0.0 8.8e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|564288176|ref|YP_008874389.1| - 1.5e-05 24.6 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|564288176|ref|YP_008874389.1| - 0.0058 16.3 0.0 0.0091 15.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|564288176|ref|YP_008874389.1| - 0.0072 15.6 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rio2_N PF09202.6 gi|564288176|ref|YP_008874389.1| - 0.013 15.5 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal Rrf2 PF02082.15 gi|564288176|ref|YP_008874389.1| - 0.019 15.0 0.0 0.03 14.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_13 PF11972.3 gi|564288176|ref|YP_008874389.1| - 0.035 13.9 0.0 0.093 12.5 0.0 1.6 1 1 1 2 2 2 0 HTH DNA binding domain TrmB PF01978.14 gi|564288176|ref|YP_008874389.1| - 0.036 13.7 0.0 0.06 13.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pollen_allerg_2 PF01620.11 gi|564288176|ref|YP_008874389.1| - 0.05 13.9 0.0 0.071 13.4 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease (pollen allergen) HTH_IclR PF09339.5 gi|564288176|ref|YP_008874389.1| - 0.064 12.8 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|564288176|ref|YP_008874389.1| - 0.093 12.4 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Topoisom_bac PF01131.15 gi|564288176|ref|YP_008874389.1| - 0.1 11.3 0.0 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase GntR PF00392.16 gi|564288176|ref|YP_008874389.1| - 0.11 11.9 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF505 PF04458.7 gi|564288176|ref|YP_008874389.1| - 0.16 10.1 0.0 0.19 9.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2249 PF10006.4 gi|564288177|ref|YP_008874390.1| - 5.3e-80 262.9 16.5 3.7e-27 93.6 0.4 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) Hemerythrin PF01814.18 gi|564288178|ref|YP_008874391.1| - 1.1e-21 77.3 18.2 1.1e-21 77.3 12.6 1.7 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.9 gi|564288178|ref|YP_008874391.1| - 7.2e-19 66.9 0.1 2.1e-18 65.4 0.0 1.8 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) CorA PF01544.13 gi|564288178|ref|YP_008874391.1| - 1.1e-05 24.6 4.8 1.1e-05 24.6 3.3 1.4 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein OmpH PF03938.9 gi|564288178|ref|YP_008874391.1| - 0.021 14.7 0.4 0.021 14.7 0.3 2.0 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DinB PF05163.7 gi|564288178|ref|YP_008874391.1| - 0.046 13.4 8.0 0.026 14.2 4.0 1.7 1 1 0 1 1 1 0 DinB family AAA_assoc_C PF09821.4 gi|564288178|ref|YP_008874391.1| - 0.053 13.7 3.4 0.051 13.8 1.3 1.8 2 0 0 2 2 2 0 C-terminal AAA-associated domain Prefoldin PF02996.12 gi|564288178|ref|YP_008874391.1| - 0.07 12.7 1.5 2.4 7.8 0.0 3.3 2 2 2 4 4 4 0 Prefoldin subunit DUF4407 PF14362.1 gi|564288178|ref|YP_008874391.1| - 0.076 11.9 5.0 0.031 13.2 0.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Tmemb_cc2 PF10267.4 gi|564288178|ref|YP_008874391.1| - 0.081 11.4 3.4 0.16 10.5 2.4 1.4 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF3038 PF11237.3 gi|564288178|ref|YP_008874391.1| - 0.086 12.6 0.7 0.17 11.6 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3038) Phage_GPO PF05929.6 gi|564288178|ref|YP_008874391.1| - 0.14 11.3 4.2 0.22 10.7 2.5 1.6 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase HAUS-augmin3 PF14932.1 gi|564288178|ref|YP_008874391.1| - 0.37 9.9 11.4 0.22 10.6 3.1 2.0 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF342 PF03961.8 gi|564288178|ref|YP_008874391.1| - 0.58 8.5 2.5 7.3 4.8 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) TPM PF04536.9 gi|564288178|ref|YP_008874391.1| - 1 9.2 3.6 18 5.2 0.1 3.1 3 0 0 3 3 3 0 TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase Spc7 PF08317.6 gi|564288178|ref|YP_008874391.1| - 1.1 7.8 7.0 0.55 8.8 0.7 2.0 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF4404 PF14357.1 gi|564288178|ref|YP_008874391.1| - 1.4 9.4 18.2 0.45 10.9 4.1 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF4404) Mnd1 PF03962.10 gi|564288178|ref|YP_008874391.1| - 1.9 8.0 9.8 2.8 7.5 2.3 2.3 1 1 1 2 2 2 0 Mnd1 family Mg_chelatase_2 PF13335.1 gi|564288178|ref|YP_008874391.1| - 7.2 7.0 7.1 28 5.1 0.3 3.2 2 2 1 3 3 3 0 Magnesium chelatase, subunit ChlI APG6 PF04111.7 gi|564288178|ref|YP_008874391.1| - 8 5.4 15.5 28 3.6 9.8 2.0 1 1 1 2 2 2 0 Autophagy protein Apg6 MMPL PF03176.10 gi|564288179|ref|YP_008874392.1| - 1.9 7.1 5.3 2.3 6.8 3.6 1.1 1 0 0 1 1 1 0 MMPL family TetR_C_6 PF13977.1 gi|564288180|ref|YP_008874393.1| - 1.4e-20 73.3 2.5 2.2e-20 72.7 0.5 2.0 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|564288180|ref|YP_008874393.1| - 3e-10 39.5 0.5 5.4e-10 38.7 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.6 gi|564288180|ref|YP_008874393.1| - 0.0087 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 YsiA-like protein, C-terminal region Sigma70_r4 PF04545.11 gi|564288180|ref|YP_008874393.1| - 0.048 12.9 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 TetR_N PF00440.18 gi|564288181|ref|YP_008874394.1| - 1.4e-13 50.2 0.2 2.5e-13 49.4 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|564288181|ref|YP_008874394.1| - 4.3e-12 46.0 1.7 4.3e-12 46.0 1.2 1.8 2 0 0 2 2 2 1 Bacterial transcriptional repressor MatE PF01554.13 gi|564288182|ref|YP_008874395.1| - 7.1e-63 211.0 33.9 1.3e-34 119.1 11.1 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|564288182|ref|YP_008874395.1| - 5.4e-05 23.0 16.2 5.4e-05 23.0 11.3 4.8 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|564288182|ref|YP_008874395.1| - 0.17 11.3 49.4 0.093 12.1 3.3 3.4 1 1 2 3 3 3 0 Polysaccharide biosynthesis protein Methyltransf_11 PF08241.7 gi|564288183|ref|YP_008874396.1| - 3.1e-21 75.6 0.0 1.6e-20 73.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|564288183|ref|YP_008874396.1| - 1.8e-18 66.7 0.0 2.2e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|564288183|ref|YP_008874396.1| - 3.5e-15 56.5 0.0 7.2e-15 55.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|564288183|ref|YP_008874396.1| - 4.2e-14 52.3 0.0 7.7e-14 51.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|564288183|ref|YP_008874396.1| - 8.7e-14 51.1 0.0 1.8e-13 50.1 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|564288183|ref|YP_008874396.1| - 2.7e-12 47.0 0.0 5.7e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|564288183|ref|YP_008874396.1| - 2.8e-11 43.6 0.0 4.8e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|564288183|ref|YP_008874396.1| - 3.6e-09 36.6 0.0 7.1e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|564288183|ref|YP_008874396.1| - 0.0013 18.1 0.0 0.0035 16.7 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|564288183|ref|YP_008874396.1| - 0.009 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|564288183|ref|YP_008874396.1| - 0.016 14.2 0.0 0.048 12.6 0.0 1.6 1 1 1 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|564288183|ref|YP_008874396.1| - 0.02 15.7 0.0 0.074 13.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_21 PF05050.7 gi|564288183|ref|YP_008874396.1| - 0.05 13.5 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase FkbM domain MetW PF07021.7 gi|564288183|ref|YP_008874396.1| - 0.056 12.8 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|564288183|ref|YP_008874396.1| - 0.057 12.5 0.0 0.075 12.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|564288183|ref|YP_008874396.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PCMT PF01135.14 gi|564288183|ref|YP_008874396.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|564288183|ref|YP_008874396.1| - 0.16 10.8 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase AIM24 PF01987.12 gi|564288184|ref|YP_008874397.1| - 1.5e-45 155.2 1.3 1.9e-45 155.0 0.9 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 PP_kinase_C PF13090.1 gi|564288185|ref|YP_008874398.1| - 2.3e-151 503.3 0.0 3.2e-151 502.9 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|564288185|ref|YP_008874398.1| - 2.7e-60 203.4 1.4 4.9e-60 202.5 1.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|564288185|ref|YP_008874398.1| - 5e-37 126.3 0.3 1.4e-36 124.9 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|564288185|ref|YP_008874398.1| - 9.2e-11 41.5 0.0 4.2e-06 26.5 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain Metallophos PF00149.23 gi|564288186|ref|YP_008874399.1| - 1.8e-08 34.0 0.4 3.6e-08 33.0 0.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|564288186|ref|YP_008874399.1| - 2.9e-08 33.7 0.0 3.8e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF457 PF04307.9 gi|564288187|ref|YP_008874401.1| - 0.07 12.4 1.0 0.083 12.2 0.7 1.3 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) PucR PF07905.6 gi|564288187|ref|YP_008874401.1| - 0.15 11.6 0.3 1.2 8.7 0.0 1.9 1 1 1 2 2 2 0 Purine catabolism regulatory protein-like family ATPase_gene1 PF09527.5 gi|564288187|ref|YP_008874401.1| - 2.7 7.8 11.2 9.7 6.0 0.1 2.1 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF726 PF05277.7 gi|564288188|ref|YP_008874402.1| - 7.4e-13 48.0 0.0 9.5e-13 47.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF726) DUF900 PF05990.7 gi|564288188|ref|YP_008874402.1| - 3e-12 46.3 0.0 4.1e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_6 PF12697.2 gi|564288188|ref|YP_008874402.1| - 3.6e-05 23.7 4.3 5.2e-05 23.2 2.9 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|564288188|ref|YP_008874402.1| - 3.8e-05 23.4 1.2 5.9e-05 22.8 0.9 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Lipase PF00151.14 gi|564288188|ref|YP_008874402.1| - 0.0018 17.5 0.0 0.0026 17.0 0.0 1.1 1 0 0 1 1 1 1 Lipase LCAT PF02450.10 gi|564288188|ref|YP_008874402.1| - 0.025 13.5 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Methyltransf_18 PF12847.2 gi|564288189|ref|YP_008874403.1| - 2.6e-15 56.9 0.0 3.9e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|564288189|ref|YP_008874403.1| - 6e-09 35.8 0.0 1.6e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|564288189|ref|YP_008874403.1| - 9.2e-09 34.7 0.0 1.1e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_11 PF08241.7 gi|564288189|ref|YP_008874403.1| - 1.1e-07 32.1 0.0 1.8e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|564288189|ref|YP_008874403.1| - 1.8e-07 30.8 0.0 2.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|564288189|ref|YP_008874403.1| - 2e-07 30.3 0.0 2.7e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|564288189|ref|YP_008874403.1| - 3.8e-07 30.4 0.0 5.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|564288189|ref|YP_008874403.1| - 9.2e-07 28.9 0.9 1.9e-06 27.9 0.6 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|564288189|ref|YP_008874403.1| - 3.2e-06 26.7 0.0 4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|564288189|ref|YP_008874403.1| - 5e-06 25.9 0.0 8.5e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|564288189|ref|YP_008874403.1| - 0.00016 22.1 0.0 0.00028 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|564288189|ref|YP_008874403.1| - 0.00087 18.9 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|564288189|ref|YP_008874403.1| - 0.008 15.7 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|564288189|ref|YP_008874403.1| - 0.064 12.3 0.0 0.083 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|564288189|ref|YP_008874403.1| - 0.069 12.7 0.0 0.08 12.5 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein PIN PF01850.16 gi|564288190|ref|YP_008874404.1| - 1.3e-07 32.0 3.2 1.5e-07 31.7 2.2 1.1 1 0 0 1 1 1 1 PIN domain SQS_PSY PF00494.14 gi|564288191|ref|YP_008874405.1| - 0.022 14.0 0.1 0.025 13.8 0.1 1.1 1 0 0 1 1 1 0 Squalene/phytoene synthase Antitoxin-MazE PF04014.13 gi|564288191|ref|YP_008874405.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Antidote-toxin recognition MazE COX1 PF00115.15 gi|564288192|ref|YP_008874406.1| - 5.9e-157 522.8 54.9 5.9e-157 522.8 38.1 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Cupin_2 PF07883.6 gi|564288193|ref|YP_008874407.1| - 1.7e-07 30.5 0.3 2.5e-07 30.0 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|564288193|ref|YP_008874407.1| - 0.0094 15.5 0.1 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|564288193|ref|YP_008874407.1| - 0.019 14.5 0.1 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_3 PF05899.7 gi|564288193|ref|YP_008874407.1| - 0.023 14.0 0.1 0.033 13.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|564288193|ref|YP_008874407.1| - 0.044 13.2 0.0 0.05 13.0 0.0 1.2 1 0 0 1 1 1 0 Cupin Pirin_C PF05726.8 gi|564288193|ref|YP_008874407.1| - 0.088 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain AraC_binding PF02311.14 gi|564288193|ref|YP_008874407.1| - 0.13 11.9 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Bac_luciferase PF00296.15 gi|564288194|ref|YP_008874408.1| - 2.9e-50 171.1 2.4 2.9e-50 171.1 1.7 1.8 1 1 1 2 2 2 1 Luciferase-like monooxygenase DUF2761 PF10959.3 gi|564288194|ref|YP_008874408.1| - 0.016 14.7 0.7 0.36 10.4 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2761) NAD_binding_10 PF13460.1 gi|564288195|ref|YP_008874409.1| - 1e-28 100.5 4.2 1.3e-28 100.2 2.9 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|564288195|ref|YP_008874409.1| - 9.1e-11 41.4 0.0 1.3e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|564288195|ref|YP_008874409.1| - 2.8e-08 32.7 0.0 3.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|564288195|ref|YP_008874409.1| - 7.8e-08 32.0 0.0 9.5e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.19 gi|564288195|ref|YP_008874409.1| - 2.4e-05 24.6 0.0 3.6e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|564288195|ref|YP_008874409.1| - 0.0022 17.9 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|564288195|ref|YP_008874409.1| - 0.0022 17.0 0.3 0.0035 16.3 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|564288195|ref|YP_008874409.1| - 0.016 15.1 3.4 0.023 14.6 0.8 2.1 1 1 1 2 2 2 0 short chain dehydrogenase ADH_zinc_N PF00107.21 gi|564288195|ref|YP_008874409.1| - 0.031 13.8 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase EamA PF00892.15 gi|564288196|ref|YP_008874410.1| - 6.4e-35 119.9 31.1 3.9e-18 65.7 8.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|564288196|ref|YP_008874410.1| - 2.2e-07 30.6 16.1 0.00032 20.3 0.8 2.6 2 0 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|564288196|ref|YP_008874410.1| - 0.0002 21.5 13.3 0.0002 21.5 9.2 3.7 1 1 1 3 3 3 1 Multidrug resistance efflux transporter RseC_MucC PF04246.7 gi|564288196|ref|YP_008874410.1| - 0.012 15.1 0.8 0.012 15.1 0.5 3.4 3 2 1 4 4 4 0 Positive regulator of sigma(E), RseC/MucC Nuc_sug_transp PF04142.10 gi|564288196|ref|YP_008874410.1| - 0.16 11.0 2.4 0.19 10.7 0.1 2.0 2 0 0 2 2 2 0 Nucleotide-sugar transporter Aldo_ket_red PF00248.16 gi|564288197|ref|YP_008874411.1| - 2.1e-60 203.9 0.0 2.6e-60 203.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Peptidase_M19 PF01244.16 gi|564288198|ref|YP_008874412.1| - 0.037 12.9 0.0 0.039 12.8 0.0 1.1 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) Methyltransf_24 PF13578.1 gi|564288315|ref|YP_008874414.1| - 0.13 13.0 0.0 0.18 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Peptidase_M48 PF01435.13 gi|564288199|ref|YP_008874415.1| - 8.1e-41 140.0 0.0 9.8e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|564288199|ref|YP_008874415.1| - 2.3e-06 26.8 0.1 5.1e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|564288199|ref|YP_008874415.1| - 0.014 15.4 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|564288199|ref|YP_008874415.1| - 0.16 11.6 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family ACT_7 PF13840.1 gi|564288199|ref|YP_008874415.1| - 0.31 10.5 1.4 0.57 9.7 0.4 1.9 1 1 1 2 2 2 0 ACT domain Mem_trans PF03547.13 gi|564288199|ref|YP_008874415.1| - 1.1 7.4 4.0 0.17 10.1 0.0 1.6 2 0 0 2 2 2 0 Membrane transport protein ADH_N PF08240.7 gi|564288200|ref|YP_008874416.1| - 3.3e-32 110.5 3.3 7.5e-32 109.3 2.3 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|564288200|ref|YP_008874416.1| - 1.5e-22 79.5 0.4 2.6e-22 78.7 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|564288200|ref|YP_008874416.1| - 4.2e-07 30.8 0.6 2.4e-06 28.4 0.1 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase TOBE_2 PF08402.5 gi|564288200|ref|YP_008874416.1| - 0.027 14.4 1.4 0.26 11.3 0.2 2.9 2 0 0 2 2 2 0 TOBE domain DUF2318 PF10080.4 gi|564288200|ref|YP_008874416.1| - 0.068 12.9 0.8 0.29 10.9 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) Metallophos_2 PF12850.2 gi|564288201|ref|YP_008874417.1| - 4.3e-12 46.1 0.1 6.7e-11 42.2 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|564288201|ref|YP_008874417.1| - 0.0087 15.4 3.6 1.5 8.1 1.9 2.9 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase DUF3816 PF12822.2 gi|564288201|ref|YP_008874417.1| - 0.0092 15.8 0.6 0.013 15.4 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) PBC PF03792.8 gi|564288201|ref|YP_008874417.1| - 0.019 14.6 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 PBC domain HTH_20 PF12840.2 gi|564288202|ref|YP_008874418.1| - 1.4e-05 24.8 0.1 2.1e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|564288202|ref|YP_008874418.1| - 0.0018 17.9 0.2 0.0042 16.7 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|564288202|ref|YP_008874418.1| - 0.0023 17.4 0.0 0.0044 16.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|564288202|ref|YP_008874418.1| - 0.007 15.9 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|564288202|ref|YP_008874418.1| - 0.048 13.3 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.2 gi|564288202|ref|YP_008874418.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FAD-oxidase_C PF02913.14 gi|564288205|ref|YP_008874421.1| - 2.3e-66 223.6 0.2 4.8e-66 222.6 0.1 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|564288205|ref|YP_008874421.1| - 1.2e-39 134.9 0.2 2.7e-39 133.8 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|564288205|ref|YP_008874421.1| - 1.2e-07 31.9 3.7 2.4e-07 31.0 2.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|564288205|ref|YP_008874421.1| - 3.1e-07 30.3 5.3 6e-07 29.3 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|564288205|ref|YP_008874421.1| - 2.3e-06 27.5 0.0 0.0008 19.3 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|564288205|ref|YP_008874421.1| - 0.00066 20.0 3.1 0.00095 19.5 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|564288205|ref|YP_008874421.1| - 0.00094 19.3 2.4 0.0078 16.4 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|564288205|ref|YP_008874421.1| - 0.1 12.4 5.9 0.26 11.1 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain PP2C_C PF07830.8 gi|564288205|ref|YP_008874421.1| - 0.1 12.6 0.1 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Fer4_10 PF13237.1 gi|564288205|ref|YP_008874421.1| - 0.18 11.6 9.4 0.055 13.2 1.2 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|564288205|ref|YP_008874421.1| - 0.18 10.8 0.2 0.33 10.0 0.1 1.3 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_15 PF13459.1 gi|564288205|ref|YP_008874421.1| - 0.32 11.5 3.4 0.66 10.5 0.2 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|564288205|ref|YP_008874421.1| - 0.37 11.2 7.9 5.3 7.5 5.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|564288205|ref|YP_008874421.1| - 5 6.8 12.4 0.18 11.4 2.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.9 gi|564288206|ref|YP_008874422.1| - 5e-102 342.0 43.0 1.2e-53 182.4 15.8 2.1 2 0 0 2 2 2 2 L-lactate permease ThuA PF06283.6 gi|564288207|ref|YP_008874423.1| - 3.6e-49 167.3 0.5 4.2e-49 167.1 0.3 1.0 1 0 0 1 1 1 1 Trehalose utilisation Pyr_redox_2 PF07992.9 gi|564288209|ref|YP_008874425.1| - 6.6e-18 65.3 1.6 6.3e-14 52.3 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|564288209|ref|YP_008874425.1| - 2.2e-12 46.5 0.3 1.6e-05 23.9 0.0 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|564288209|ref|YP_008874425.1| - 7.3e-10 37.8 0.1 5.8e-05 21.7 0.0 2.3 2 1 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|564288209|ref|YP_008874425.1| - 6.4e-09 35.3 1.1 1.4e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|564288209|ref|YP_008874425.1| - 9.7e-09 35.5 1.5 0.0003 20.9 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|564288209|ref|YP_008874425.1| - 1.5e-07 30.6 1.3 2.2e-06 26.8 0.1 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|564288209|ref|YP_008874425.1| - 2.5e-05 24.2 0.0 6.2e-05 22.9 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|564288209|ref|YP_008874425.1| - 4.7e-05 22.4 0.7 0.00025 20.0 0.0 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|564288209|ref|YP_008874425.1| - 0.00013 21.7 0.2 0.14 11.9 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|564288209|ref|YP_008874425.1| - 0.00017 20.7 0.0 0.00032 19.8 0.0 1.5 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|564288209|ref|YP_008874425.1| - 0.00024 20.2 5.4 0.00028 20.1 0.0 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|564288209|ref|YP_008874425.1| - 0.0029 17.9 0.1 0.031 14.6 0.0 2.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|564288209|ref|YP_008874425.1| - 0.013 14.4 0.0 0.036 13.0 0.0 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|564288209|ref|YP_008874425.1| - 0.036 12.9 0.1 2.6 6.8 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|564288209|ref|YP_008874425.1| - 0.13 12.5 0.2 0.26 11.5 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding ADH_N PF08240.7 gi|564288210|ref|YP_008874426.1| - 2.5e-27 94.7 0.8 6.4e-27 93.4 0.6 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|564288210|ref|YP_008874426.1| - 4.1e-24 84.6 1.2 6.9e-24 83.8 0.8 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|564288210|ref|YP_008874426.1| - 2.4e-06 27.0 0.1 5.9e-06 25.8 0.1 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated NADH_4Fe-4S PF10589.4 gi|564288210|ref|YP_008874426.1| - 0.5 9.5 4.3 1.5 8.0 2.3 2.3 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Peripla_BP_2 PF01497.13 gi|564288211|ref|YP_008874427.1| - 9.5e-19 67.4 0.0 1.3e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.22 gi|564288212|ref|YP_008874428.1| - 6.6e-30 104.2 0.0 9.8e-30 103.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|564288212|ref|YP_008874428.1| - 3.6e-12 46.8 2.0 1.1e-05 25.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|564288212|ref|YP_008874428.1| - 2.1e-11 43.4 0.1 5.2e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|564288212|ref|YP_008874428.1| - 1.4e-06 28.4 2.7 2.5e-05 24.4 1.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|564288212|ref|YP_008874428.1| - 6.9e-06 25.5 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|564288212|ref|YP_008874428.1| - 7.3e-06 25.2 0.8 0.018 14.0 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|564288212|ref|YP_008874428.1| - 2.8e-05 24.1 3.8 0.00014 21.9 2.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|564288212|ref|YP_008874428.1| - 4.7e-05 23.2 0.1 0.00035 20.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|564288212|ref|YP_008874428.1| - 0.00018 20.2 0.9 0.29 9.6 0.0 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|564288212|ref|YP_008874428.1| - 0.00044 21.0 0.2 0.0011 19.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|564288212|ref|YP_008874428.1| - 0.00047 19.6 2.9 0.0057 16.0 2.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|564288212|ref|YP_008874428.1| - 0.00049 20.4 0.1 0.00086 19.6 0.1 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|564288212|ref|YP_008874428.1| - 0.0018 17.9 0.1 0.004 16.8 0.0 1.6 2 0 0 2 2 1 1 NACHT domain SRP54 PF00448.17 gi|564288212|ref|YP_008874428.1| - 0.0023 17.4 0.0 0.0045 16.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|564288212|ref|YP_008874428.1| - 0.0025 17.5 0.0 0.0073 16.0 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|564288212|ref|YP_008874428.1| - 0.0039 16.7 0.1 0.0091 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|564288212|ref|YP_008874428.1| - 0.0052 16.6 0.0 0.012 15.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|564288212|ref|YP_008874428.1| - 0.0059 16.3 0.0 0.011 15.5 0.0 1.5 2 0 0 2 2 1 1 Archaeal ATPase DUF258 PF03193.11 gi|564288212|ref|YP_008874428.1| - 0.0059 15.8 0.3 0.0096 15.1 0.0 1.5 2 0 0 2 2 1 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|564288212|ref|YP_008874428.1| - 0.0063 16.1 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|564288212|ref|YP_008874428.1| - 0.0081 16.1 0.2 0.035 14.0 0.2 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|564288212|ref|YP_008874428.1| - 0.01 15.2 0.3 0.022 14.2 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA PF00004.24 gi|564288212|ref|YP_008874428.1| - 0.012 15.8 0.2 0.03 14.5 0.1 2.0 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|564288212|ref|YP_008874428.1| - 0.017 14.2 0.1 0.039 13.0 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.12 gi|564288212|ref|YP_008874428.1| - 0.027 13.9 0.1 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|564288212|ref|YP_008874428.1| - 0.028 13.8 0.4 0.079 12.3 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|564288212|ref|YP_008874428.1| - 0.03 13.4 0.1 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|564288212|ref|YP_008874428.1| - 0.031 14.5 0.2 0.066 13.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|564288212|ref|YP_008874428.1| - 0.044 13.5 0.4 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|564288212|ref|YP_008874428.1| - 0.046 13.9 0.0 0.08 13.1 0.0 1.5 1 1 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.9 gi|564288212|ref|YP_008874428.1| - 0.053 12.4 0.5 0.56 9.1 0.4 2.0 1 1 0 1 1 1 0 KAP family P-loop domain NB-ARC PF00931.17 gi|564288212|ref|YP_008874428.1| - 0.063 12.1 0.7 1.5 7.5 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain SbcCD_C PF13558.1 gi|564288212|ref|YP_008874428.1| - 0.069 13.0 0.3 0.85 9.5 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|564288212|ref|YP_008874428.1| - 0.073 12.7 0.4 1.1 8.9 0.0 2.2 2 0 0 2 2 2 0 NTPase APS_kinase PF01583.15 gi|564288212|ref|YP_008874428.1| - 0.084 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CobA_CobO_BtuR PF02572.10 gi|564288212|ref|YP_008874428.1| - 0.097 12.2 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_28 PF13521.1 gi|564288212|ref|YP_008874428.1| - 0.1 12.5 0.1 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain FecCD PF01032.13 gi|564288213|ref|YP_008874429.1| - 3.4e-89 298.7 36.6 4.3e-89 298.4 25.4 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|564288213|ref|YP_008874429.1| - 0.00044 19.6 12.0 0.00044 19.6 8.3 2.3 1 1 1 2 2 2 1 ABC 3 transport family DAO PF01266.19 gi|564288214|ref|YP_008874430.1| - 5.7e-09 35.3 8.3 0.00021 20.2 0.1 3.4 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|564288214|ref|YP_008874430.1| - 2.2e-08 34.2 0.0 3.2e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|564288214|ref|YP_008874430.1| - 9.3e-05 21.4 1.4 0.00054 18.9 0.1 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|564288214|ref|YP_008874430.1| - 0.00013 21.0 1.6 0.00014 20.8 0.1 1.8 2 1 1 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|564288214|ref|YP_008874430.1| - 0.00079 18.5 0.0 0.0018 17.4 0.0 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|564288214|ref|YP_008874430.1| - 0.0012 17.3 0.0 0.0064 15.0 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|564288214|ref|YP_008874430.1| - 0.0018 18.2 0.1 0.0044 17.0 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|564288214|ref|YP_008874430.1| - 0.0021 17.1 1.0 0.0021 17.1 0.7 1.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|564288214|ref|YP_008874430.1| - 0.0061 16.6 1.7 0.96 9.4 0.1 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|564288214|ref|YP_008874430.1| - 0.017 14.2 3.1 0.018 14.0 0.2 2.1 1 1 1 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.1 gi|564288214|ref|YP_008874430.1| - 0.04 13.6 7.5 0.23 11.2 0.3 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|564288214|ref|YP_008874430.1| - 0.064 12.1 0.4 0.43 9.4 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein RPE65 PF03055.10 gi|564288215|ref|YP_008874431.1| - 5.9e-111 371.4 0.0 6.6e-111 371.2 0.0 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein EamA PF00892.15 gi|564288216|ref|YP_008874432.1| - 5.2e-34 117.0 27.5 2.1e-17 63.3 10.4 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|564288216|ref|YP_008874432.1| - 5.6e-09 36.1 2.3 5.6e-09 36.1 1.6 3.2 2 1 0 3 3 3 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|564288216|ref|YP_008874432.1| - 0.18 10.6 6.3 0.65 8.7 1.7 2.1 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF914) ATP1G1_PLM_MAT8 PF02038.11 gi|564288216|ref|YP_008874432.1| - 3.7 6.6 5.6 1.4 7.9 0.2 2.6 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF3939 PF13075.1 gi|564288217|ref|YP_008874433.1| - 0.13 11.9 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) DZR PF12773.2 gi|564288217|ref|YP_008874433.1| - 0.22 11.3 12.3 17 5.2 8.5 2.8 1 1 0 1 1 1 0 Double zinc ribbon RNHCP PF12647.2 gi|564288217|ref|YP_008874433.1| - 2.1 8.2 8.7 0.18 11.6 1.8 2.1 2 1 0 2 2 2 0 RNHCP domain zf-MYND PF01753.13 gi|564288217|ref|YP_008874433.1| - 6.2 6.7 7.8 36 4.3 3.1 2.7 2 1 0 2 2 2 0 MYND finger Methyltransf_11 PF08241.7 gi|564288218|ref|YP_008874434.1| - 2.4e-14 53.5 0.0 4e-14 52.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|564288218|ref|YP_008874434.1| - 2.8e-12 46.6 0.1 3.5e-12 46.3 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|564288218|ref|YP_008874434.1| - 1.7e-10 41.1 0.0 3.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|564288218|ref|YP_008874434.1| - 2.5e-09 36.8 0.0 2.9e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|564288218|ref|YP_008874434.1| - 2.6e-09 37.6 0.1 3.9e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|564288218|ref|YP_008874434.1| - 8.2e-09 35.5 0.0 1.3e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|564288218|ref|YP_008874434.1| - 2.2e-08 33.6 0.0 3.3e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|564288218|ref|YP_008874434.1| - 4.3e-08 33.5 0.1 6.5e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|564288218|ref|YP_008874434.1| - 0.0013 17.9 0.0 0.0017 17.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_24 PF13578.1 gi|564288218|ref|YP_008874434.1| - 0.0014 19.4 0.1 0.0037 18.0 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|564288218|ref|YP_008874434.1| - 0.0015 17.9 0.0 0.0019 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DUF938 PF06080.7 gi|564288218|ref|YP_008874434.1| - 0.0045 16.5 0.0 0.0063 16.0 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_9 PF08003.6 gi|564288218|ref|YP_008874434.1| - 0.014 14.1 0.0 0.018 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.12 gi|564288218|ref|YP_008874434.1| - 0.042 12.9 0.0 0.06 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Pox_MCEL PF03291.11 gi|564288218|ref|YP_008874434.1| - 0.083 11.7 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme SHOCT PF09851.4 gi|564288219|ref|YP_008874435.1| - 4.7e-06 25.8 1.0 6.2e-06 25.4 0.7 1.2 1 0 0 1 1 1 1 Short C-terminal domain FtsL PF04999.8 gi|564288219|ref|YP_008874435.1| - 0.0018 17.9 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 Cell division protein FtsL DUF4381 PF14316.1 gi|564288219|ref|YP_008874435.1| - 0.002 18.2 0.2 0.0025 17.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) GvpG PF05120.7 gi|564288219|ref|YP_008874435.1| - 0.0063 16.3 1.2 0.0096 15.7 0.8 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.6 gi|564288219|ref|YP_008874435.1| - 0.012 15.3 0.5 0.018 14.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) DUF4366 PF14283.1 gi|564288219|ref|YP_008874435.1| - 0.052 12.9 0.0 0.058 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) DUF2244 PF10003.4 gi|564288219|ref|YP_008874435.1| - 0.091 12.1 0.0 0.091 12.1 0.0 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) OPA3 PF07047.7 gi|564288219|ref|YP_008874435.1| - 0.12 12.1 0.1 0.15 11.7 0.1 1.0 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) PIG-P PF08510.7 gi|564288219|ref|YP_008874435.1| - 0.15 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 PIG-P Pyridox_ox_2 PF12900.2 gi|564288220|ref|YP_008874436.1| - 1.9e-14 53.6 0.1 2.2e-14 53.4 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|564288220|ref|YP_008874436.1| - 9.3e-06 25.5 0.0 1.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF756 PF05506.7 gi|564288220|ref|YP_008874436.1| - 0.014 15.8 0.1 0.028 14.8 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF756) AMP-binding PF00501.23 gi|564288221|ref|YP_008874437.1| - 1.9e-49 168.2 0.1 3e-49 167.5 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Hemerythrin PF01814.18 gi|564288221|ref|YP_008874437.1| - 8.5e-12 45.3 6.7 4.6e-11 43.0 4.7 2.1 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain DUF35_N PF12172.3 gi|564288223|ref|YP_008874439.1| - 0.12 12.3 1.2 1.3 9.0 0.5 2.8 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|564288223|ref|YP_008874439.1| - 0.44 9.8 3.2 1.2 8.4 0.4 2.1 1 1 2 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|564288223|ref|YP_008874439.1| - 1.1 9.1 4.8 4.7 7.0 3.3 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain COG7 PF10191.4 gi|564288224|ref|YP_008874440.1| - 0.16 9.8 0.0 0.21 9.4 0.0 1.1 1 0 0 1 1 1 0 Golgi complex component 7 (COG7) Rrf2 PF02082.15 gi|564288225|ref|YP_008874441.1| - 0.023 14.7 0.2 0.072 13.2 0.1 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|564288225|ref|YP_008874441.1| - 0.034 13.7 0.6 0.81 9.3 0.9 2.9 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|564288225|ref|YP_008874441.1| - 0.16 11.5 3.2 1.1 8.7 0.7 2.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Amidohydro_1 PF01979.15 gi|564288226|ref|YP_008874442.1| - 2.5e-40 139.1 0.6 3.4e-40 138.7 0.4 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|564288226|ref|YP_008874442.1| - 1.8e-14 53.2 0.2 1.3e-13 50.5 0.0 2.5 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|564288226|ref|YP_008874442.1| - 3.6e-12 46.2 3.3 1.3e-09 37.8 0.5 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|564288226|ref|YP_008874442.1| - 1.2e-11 45.1 0.0 6.2e-10 39.5 0.0 2.3 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|564288226|ref|YP_008874442.1| - 0.0089 15.2 0.1 0.015 14.5 0.1 1.3 1 0 0 1 1 1 1 TatD related DNase Amidohydro_4 PF13147.1 gi|564288227|ref|YP_008874443.1| - 1.1e-19 71.5 12.6 1.6e-19 71.0 6.7 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|564288227|ref|YP_008874443.1| - 7.2e-13 48.1 3.3 1.8e-12 46.9 1.7 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|564288227|ref|YP_008874443.1| - 6.1e-11 42.5 0.0 1.8e-10 41.0 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|564288227|ref|YP_008874443.1| - 0.031 14.4 0.5 0.099 12.7 0.4 1.9 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain PALP PF00291.20 gi|564288228|ref|YP_008874444.1| - 1.4e-62 211.7 0.3 1.6e-62 211.4 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|564288228|ref|YP_008874444.1| - 0.014 14.9 0.9 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain Bac_luciferase PF00296.15 gi|564288229|ref|YP_008874445.1| - 3.4e-53 180.7 0.1 4.2e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase BPD_transp_2 PF02653.11 gi|564288230|ref|YP_008874446.1| - 1.1e-38 132.8 28.6 1.1e-38 132.8 19.9 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF3639 PF12341.3 gi|564288230|ref|YP_008874446.1| - 0.64 10.0 2.7 4.9 7.2 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) BPD_transp_2 PF02653.11 gi|564288231|ref|YP_008874447.1| - 4.1e-38 130.8 32.7 4.1e-38 130.8 22.7 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Herpes_UL20 PF04544.7 gi|564288231|ref|YP_008874447.1| - 0.27 11.0 4.6 0.16 11.7 0.2 2.3 2 0 0 2 2 2 0 Herpesvirus egress protein UL20 MtrF PF09472.5 gi|564288231|ref|YP_008874447.1| - 5.8 6.2 12.5 0.34 10.1 0.5 3.3 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) ABC_tran PF00005.22 gi|564288232|ref|YP_008874448.1| - 1.9e-47 160.9 0.0 4.2e-29 101.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|564288232|ref|YP_008874448.1| - 6.7e-12 45.9 0.6 5.1e-10 39.7 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|564288232|ref|YP_008874448.1| - 5.4e-05 22.7 0.4 1.4 8.2 0.0 3.2 3 0 0 3 3 3 2 AAA-like domain AAA_15 PF13175.1 gi|564288232|ref|YP_008874448.1| - 0.00095 18.3 0.1 0.38 9.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|564288232|ref|YP_008874448.1| - 0.0059 16.1 0.0 0.019 14.4 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|564288232|ref|YP_008874448.1| - 0.012 14.7 0.3 0.12 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|564288232|ref|YP_008874448.1| - 0.038 13.9 1.9 7.2 6.5 0.0 3.2 3 0 0 3 3 3 0 AAA ATPase domain SbcCD_C PF13558.1 gi|564288232|ref|YP_008874448.1| - 0.059 13.2 0.1 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|564288232|ref|YP_008874448.1| - 0.059 13.6 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|564288232|ref|YP_008874448.1| - 0.11 12.5 0.1 7.6 6.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|564288232|ref|YP_008874448.1| - 0.14 10.5 0.0 0.21 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|564288232|ref|YP_008874448.1| - 0.16 11.5 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial dnaA protein Bmp PF02608.9 gi|564288233|ref|YP_008874449.1| - 8.2e-42 142.9 0.0 1e-41 142.6 0.0 1.0 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|564288233|ref|YP_008874449.1| - 0.2 11.7 1.5 0.66 10.1 1.0 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Bmp PF02608.9 gi|564288234|ref|YP_008874450.1| - 3.8e-41 140.8 0.0 4.6e-41 140.5 0.0 1.0 1 0 0 1 1 1 1 Basic membrane protein D-aminoacyl_C PF07908.7 gi|564288235|ref|YP_008874451.1| - 4.4e-16 57.9 0.1 4.4e-16 57.9 0.1 2.0 2 0 0 2 2 2 1 D-aminoacylase, C-terminal region Amidohydro_5 PF13594.1 gi|564288235|ref|YP_008874451.1| - 6.6e-13 48.2 0.0 2.4e-12 46.4 0.0 2.0 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|564288235|ref|YP_008874451.1| - 1.8e-09 37.2 3.0 3.5e-08 33.0 2.1 2.2 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|564288235|ref|YP_008874451.1| - 4.3e-09 36.7 9.0 3.2e-06 27.3 6.2 3.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|564288235|ref|YP_008874451.1| - 1.1e-05 25.3 0.0 0.013 15.1 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family Peptidase_M20 PF01546.23 gi|564288236|ref|YP_008874452.1| - 1.4e-25 89.9 0.4 2e-25 89.4 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|564288236|ref|YP_008874452.1| - 1.2e-07 31.5 0.0 2.4e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|564288236|ref|YP_008874452.1| - 7.4e-05 22.5 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 Fer2_2 PF01799.15 gi|564288237|ref|YP_008874453.1| - 1.4e-31 108.2 0.5 2.1e-31 107.6 0.0 1.5 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|564288237|ref|YP_008874453.1| - 3.7e-05 23.3 1.3 3.7e-05 23.3 0.9 3.1 3 1 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|564288237|ref|YP_008874453.1| - 0.0018 18.0 0.6 0.003 17.3 0.4 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|564288238|ref|YP_008874454.1| - 1.6e-131 439.3 1.3 2.2e-131 438.9 0.9 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|564288238|ref|YP_008874454.1| - 7.1e-24 84.0 1.3 1.3e-23 83.1 0.9 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MarR_2 PF12802.2 gi|564288239|ref|YP_008874455.1| - 4.3e-06 26.3 0.0 7.1e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|564288239|ref|YP_008874455.1| - 0.004 16.6 0.0 0.0062 16.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|564288239|ref|YP_008874455.1| - 0.011 15.4 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|564288239|ref|YP_008874455.1| - 0.017 15.0 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Shadoo PF14999.1 gi|564288239|ref|YP_008874455.1| - 0.081 12.7 0.3 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective TFIIE_alpha PF02002.12 gi|564288239|ref|YP_008874455.1| - 0.097 12.1 0.0 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit z-alpha PF02295.12 gi|564288239|ref|YP_008874455.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain PemK PF02452.12 gi|564288240|ref|YP_008874456.1| - 0.0013 18.9 0.0 0.0014 18.7 0.0 1.1 1 0 0 1 1 1 1 PemK-like protein Fer2_2 PF01799.15 gi|564288241|ref|YP_008874457.1| - 2.6e-35 120.1 4.4 2.8e-35 120.0 0.1 2.2 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|564288241|ref|YP_008874457.1| - 1.2e-08 34.5 0.5 1.2e-08 34.5 0.4 2.5 3 2 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|564288241|ref|YP_008874457.1| - 1.6e-05 24.6 0.3 5.3e-05 23.0 0.2 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|564288241|ref|YP_008874457.1| - 0.0003 20.5 0.8 0.0011 18.6 0.6 2.0 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|564288241|ref|YP_008874457.1| - 2.9 7.4 9.5 0.16 11.5 2.5 2.0 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ald_Xan_dh_C2 PF02738.13 gi|564288242|ref|YP_008874458.1| - 6.3e-132 440.6 0.0 8.1e-132 440.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|564288242|ref|YP_008874458.1| - 3.1e-25 88.4 0.1 7.4e-25 87.1 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF1846 PF08903.6 gi|564288242|ref|YP_008874458.1| - 0.13 10.6 0.0 0.2 10.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1846) DrsE PF02635.10 gi|564288243|ref|YP_008874459.1| - 3.5e-26 91.6 0.0 3.9e-26 91.5 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.10 gi|564288244|ref|YP_008874460.1| - 1.8e-12 47.3 0.0 2e-12 47.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.7 gi|564288245|ref|YP_008874461.1| - 6e-05 22.6 0.6 0.0013 18.3 0.4 2.0 1 1 0 1 1 1 1 DsrH like protein XdhC_C PF13478.1 gi|564288246|ref|YP_008874462.1| - 1.5e-35 122.4 1.0 8.2e-34 116.8 0.0 2.2 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|564288246|ref|YP_008874462.1| - 8.4e-20 70.1 0.2 8.4e-20 70.1 0.2 2.7 3 0 0 3 3 3 1 XdhC and CoxI family TrkA_N PF02254.13 gi|564288246|ref|YP_008874462.1| - 0.0052 16.7 0.9 2.6 8.0 0.0 2.6 2 0 0 2 2 2 2 TrkA-N domain Pyr_redox PF00070.22 gi|564288246|ref|YP_008874462.1| - 0.0069 16.7 1.5 0.027 14.8 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|564288246|ref|YP_008874462.1| - 0.014 15.0 2.3 0.69 9.5 0.3 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|564288246|ref|YP_008874462.1| - 0.038 13.8 1.7 0.062 13.1 0.1 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|564288246|ref|YP_008874462.1| - 0.044 12.9 0.9 5.1 6.2 0.0 2.7 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AIRS_C PF02769.17 gi|564288247|ref|YP_008874463.1| - 7.1e-19 68.3 0.0 1.3e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|564288247|ref|YP_008874463.1| - 2.8e-10 40.2 1.8 8.2e-10 38.8 1.2 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TusA PF01206.12 gi|564288248|ref|YP_008874464.1| - 5.8e-15 54.6 0.0 6.6e-15 54.4 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|564288248|ref|YP_008874464.1| - 0.0026 17.2 0.1 0.003 17.0 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) NTP_transf_3 PF12804.2 gi|564288250|ref|YP_008874466.1| - 6.2e-37 127.1 0.4 7.6e-37 126.8 0.3 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|564288250|ref|YP_008874466.1| - 0.06 12.9 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Ribonuc_L-PSP PF01042.16 gi|564288251|ref|YP_008874467.1| - 1.8e-38 131.0 0.1 2e-38 130.8 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Amidohydro_1 PF01979.15 gi|564288252|ref|YP_008874468.1| - 1.3e-50 172.9 0.2 1.6e-50 172.6 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|564288252|ref|YP_008874468.1| - 1.1e-14 55.0 1.5 1.8e-13 51.1 1.0 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|564288252|ref|YP_008874468.1| - 3.4e-05 23.5 0.5 0.0002 21.1 0.0 2.5 3 0 0 3 3 3 1 Amidohydrolase A_deaminase PF00962.17 gi|564288252|ref|YP_008874468.1| - 0.017 14.0 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase DisA_N PF02457.11 gi|564288252|ref|YP_008874468.1| - 0.062 12.4 0.0 0.16 11.1 0.0 1.7 1 0 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Ribosomal_S17e PF00833.13 gi|564288253|ref|YP_008874469.1| - 0.0068 16.1 0.0 0.0075 16.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 NAD_synthase PF02540.12 gi|564288254|ref|YP_008874470.1| - 5.5e-46 156.4 0.0 7e-46 156.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_23 PF13384.1 gi|564288254|ref|YP_008874470.1| - 0.0026 17.3 0.0 0.0075 15.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_38 PF13936.1 gi|564288254|ref|YP_008874470.1| - 0.075 12.5 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain S-methyl_trans PF02574.11 gi|564288254|ref|YP_008874470.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Homocysteine S-methyltransferase Lar_restr_allev PF14354.1 gi|564288255|ref|YP_008874471.1| - 0.089 13.1 0.4 0.2 11.9 0.3 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|564288255|ref|YP_008874471.1| - 0.22 11.0 1.2 0.34 10.4 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain AAA_13 PF13166.1 gi|564288256|ref|YP_008874472.1| - 7.4e-09 34.6 32.4 1.2e-07 30.6 7.4 3.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|564288256|ref|YP_008874472.1| - 4.7e-07 30.3 31.0 0.17 12.1 21.5 3.7 1 1 0 1 1 1 1 AAA domain Cast PF10174.4 gi|564288256|ref|YP_008874472.1| - 1.2e-06 26.9 49.9 8e-05 20.9 15.0 2.1 2 0 0 2 2 2 2 RIM-binding protein of the cytomatrix active zone FliJ PF02050.11 gi|564288256|ref|YP_008874472.1| - 5.9e-06 26.3 41.2 0.0005 20.1 5.0 5.4 4 2 2 6 6 5 3 Flagellar FliJ protein IncA PF04156.9 gi|564288256|ref|YP_008874472.1| - 7e-06 25.7 63.9 0.0066 16.0 16.7 4.0 2 2 2 4 4 4 3 IncA protein Spc7 PF08317.6 gi|564288256|ref|YP_008874472.1| - 1.4e-05 23.9 43.0 0.013 14.1 11.9 3.1 2 1 0 2 2 2 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|564288256|ref|YP_008874472.1| - 4.3e-05 23.3 58.6 0.0089 15.8 12.7 4.7 2 2 2 4 4 4 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 WEMBL PF05701.6 gi|564288256|ref|YP_008874472.1| - 8.2e-05 21.2 51.6 0.037 12.5 11.9 3.1 2 1 1 3 3 3 2 Weak chloroplast movement under blue light SMC_N PF02463.14 gi|564288256|ref|YP_008874472.1| - 9.7e-05 21.7 1.2 0.1 11.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Atg14 PF10186.4 gi|564288256|ref|YP_008874472.1| - 0.00012 21.1 11.9 0.00012 21.1 8.2 3.5 2 2 1 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 AAA_21 PF13304.1 gi|564288256|ref|YP_008874472.1| - 0.00054 20.0 0.0 0.0023 17.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain Reo_sigmaC PF04582.7 gi|564288256|ref|YP_008874472.1| - 0.00068 18.9 5.2 0.00068 18.9 3.6 3.2 1 1 3 4 4 4 1 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|564288256|ref|YP_008874472.1| - 0.00086 19.5 29.0 0.054 13.7 0.8 5.8 3 1 2 5 5 5 2 Nucleopolyhedrovirus P10 protein Seryl_tRNA_N PF02403.17 gi|564288256|ref|YP_008874472.1| - 0.0028 17.6 40.7 0.0092 15.9 1.8 5.2 3 2 1 4 4 4 2 Seryl-tRNA synthetase N-terminal domain FlaC_arch PF05377.6 gi|564288256|ref|YP_008874472.1| - 0.003 17.4 29.0 1.7 8.5 0.1 7.3 4 3 4 8 8 8 1 Flagella accessory protein C (FlaC) Rootletin PF15035.1 gi|564288256|ref|YP_008874472.1| - 0.0033 17.4 18.7 0.0033 17.4 13.0 3.2 2 1 0 2 2 1 1 Ciliary rootlet component, centrosome cohesion CorA PF01544.13 gi|564288256|ref|YP_008874472.1| - 0.0047 16.0 10.4 0.0047 16.0 7.2 3.8 1 1 4 5 5 5 1 CorA-like Mg2+ transporter protein Tropomyosin_1 PF12718.2 gi|564288256|ref|YP_008874472.1| - 0.0057 16.5 61.2 0.28 11.0 9.3 4.2 2 2 1 3 3 3 3 Tropomyosin like Baculo_PEP_C PF04513.7 gi|564288256|ref|YP_008874472.1| - 0.0093 15.7 26.2 0.013 15.3 2.2 4.3 2 2 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|564288256|ref|YP_008874472.1| - 0.0094 15.7 35.8 0.056 13.1 6.6 4.2 2 2 3 5 5 5 3 Laminin Domain II PspA_IM30 PF04012.7 gi|564288256|ref|YP_008874472.1| - 0.014 14.7 51.5 0.21 10.9 14.7 3.2 2 2 0 2 2 2 0 PspA/IM30 family TPR_MLP1_2 PF07926.7 gi|564288256|ref|YP_008874472.1| - 0.016 14.9 51.7 0.13 12.0 11.9 5.3 1 1 3 4 4 4 0 TPR/MLP1/MLP2-like protein ApbE PF02424.10 gi|564288256|ref|YP_008874472.1| - 0.02 14.1 0.2 0.064 12.5 0.0 1.9 1 1 1 2 2 2 0 ApbE family DUF1664 PF07889.7 gi|564288256|ref|YP_008874472.1| - 0.021 14.6 29.8 0.11 12.3 1.4 4.8 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) GAS PF13851.1 gi|564288256|ref|YP_008874472.1| - 0.046 12.8 47.9 0.03 13.5 3.5 4.2 2 2 1 4 4 4 0 Growth-arrest specific micro-tubule binding DUF3584 PF12128.3 gi|564288256|ref|YP_008874472.1| - 0.047 11.0 52.4 0.053 10.8 33.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3584) AAA_27 PF13514.1 gi|564288256|ref|YP_008874472.1| - 0.049 11.3 54.9 0.015 12.9 17.7 2.3 1 1 1 2 2 2 0 AAA domain MscS_porin PF12795.2 gi|564288256|ref|YP_008874472.1| - 0.28 10.4 62.3 0.032 13.5 9.6 4.4 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain COG2 PF06148.6 gi|564288256|ref|YP_008874472.1| - 0.32 10.8 37.1 0.53 10.1 3.4 5.5 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Filament PF00038.16 gi|564288256|ref|YP_008874472.1| - 0.32 10.4 51.5 6.1 6.2 4.2 4.1 1 1 2 3 3 2 0 Intermediate filament protein MAD PF05557.8 gi|564288256|ref|YP_008874472.1| - 0.34 8.9 44.7 0.13 10.3 13.0 2.3 2 0 0 2 2 2 0 Mitotic checkpoint protein Med14 PF08638.6 gi|564288256|ref|YP_008874472.1| - 0.34 10.1 4.9 0.37 10.0 0.0 2.9 3 1 0 3 3 3 0 Mediator complex subunit MED14 Vac_Fusion PF02346.11 gi|564288256|ref|YP_008874472.1| - 0.4 10.1 14.0 8.3 5.9 0.5 4.9 3 1 2 5 5 5 0 Chordopoxvirus fusion protein ATG16 PF08614.6 gi|564288256|ref|YP_008874472.1| - 0.42 10.4 52.6 0.15 11.8 14.0 4.3 2 2 2 4 4 4 0 Autophagy protein 16 (ATG16) DUF869 PF05911.6 gi|564288256|ref|YP_008874472.1| - 0.86 7.7 40.3 1.5 6.9 27.9 1.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) Prefoldin_2 PF01920.15 gi|564288256|ref|YP_008874472.1| - 0.9 9.3 51.0 1.8 8.3 3.8 7.7 3 3 3 6 6 6 0 Prefoldin subunit Myosin_tail_1 PF01576.14 gi|564288256|ref|YP_008874472.1| - 1.1 6.8 62.3 0.32 8.6 21.4 2.5 1 1 2 3 3 3 0 Myosin tail TMF_DNA_bd PF12329.3 gi|564288256|ref|YP_008874472.1| - 1.7 8.4 54.9 0.52 10.1 3.4 6.4 3 2 2 5 5 5 0 TATA element modulatory factor 1 DNA binding YscO PF07321.7 gi|564288256|ref|YP_008874472.1| - 2.4 7.9 49.7 0.13 12.1 10.9 4.9 3 1 2 5 5 5 0 Type III secretion protein YscO ISG65-75 PF11727.3 gi|564288256|ref|YP_008874472.1| - 3.3 6.6 29.0 0.046 12.7 4.1 3.4 2 2 1 3 3 3 0 Invariant surface glycoprotein Laminin_I PF06008.9 gi|564288256|ref|YP_008874472.1| - 3.4 6.9 43.2 0.0082 15.4 9.9 3.2 2 1 1 3 3 2 0 Laminin Domain I APG6 PF04111.7 gi|564288256|ref|YP_008874472.1| - 3.6 6.5 53.0 0.42 9.6 9.8 4.0 1 1 3 4 4 4 0 Autophagy protein Apg6 Fzo_mitofusin PF04799.8 gi|564288256|ref|YP_008874472.1| - 3.9 6.8 24.8 4.6 6.6 0.8 5.1 2 1 3 5 5 5 0 fzo-like conserved region MCPsignal PF00015.16 gi|564288256|ref|YP_008874472.1| - 4.3 6.8 27.4 8.4 5.8 7.3 3.5 1 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Endotoxin_N PF03945.9 gi|564288256|ref|YP_008874472.1| - 5.5 6.3 7.0 0.24 10.7 0.2 2.0 2 1 1 3 3 2 0 delta endotoxin, N-terminal domain HOOK PF05622.7 gi|564288256|ref|YP_008874472.1| - 5.8 4.5 53.6 0.98 7.1 19.6 2.8 1 1 0 2 2 2 0 HOOK protein TMF_TATA_bd PF12325.3 gi|564288256|ref|YP_008874472.1| - 6.5 6.5 61.0 0.085 12.5 4.9 6.1 2 2 4 6 6 5 0 TATA element modulatory factor 1 TATA binding Cluap1 PF10234.4 gi|564288256|ref|YP_008874472.1| - 7.2 5.7 41.4 0.081 12.1 1.8 4.7 2 2 2 4 4 4 0 Clusterin-associated protein-1 DUF2730 PF10805.3 gi|564288256|ref|YP_008874472.1| - 8.7 6.1 30.4 3 7.6 1.3 4.9 3 1 1 4 4 4 0 Protein of unknown function (DUF2730) Mod_r PF07200.8 gi|564288256|ref|YP_008874472.1| - 8.9 6.2 41.2 0.75 9.7 8.8 4.1 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein DUF948 PF06103.6 gi|564288256|ref|YP_008874472.1| - 8.9 6.2 17.3 3 7.7 0.6 5.1 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) GAF_2 PF13185.1 gi|564288258|ref|YP_008874474.1| - 3.9e-38 131.2 1.9 1.6e-14 54.6 0.0 4.4 4 0 0 4 4 4 4 GAF domain GAF_3 PF13492.1 gi|564288258|ref|YP_008874474.1| - 4.1e-26 91.5 0.0 3.7e-07 30.2 0.0 4.4 4 0 0 4 4 4 4 GAF domain GAF PF01590.21 gi|564288258|ref|YP_008874474.1| - 2.1e-22 79.8 0.0 1.6e-06 28.3 0.0 4.4 4 1 0 4 4 4 3 GAF domain Response_reg PF00072.19 gi|564288258|ref|YP_008874474.1| - 4.4e-19 68.5 0.0 1.6e-18 66.7 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.7 gi|564288258|ref|YP_008874474.1| - 1.8e-16 59.4 0.0 7.1e-16 57.5 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain OKR_DC_1_N PF03709.10 gi|564288258|ref|YP_008874474.1| - 3.8e-06 26.9 0.1 6.7e-05 22.9 0.0 2.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Sigma70_r4 PF04545.11 gi|564288258|ref|YP_008874474.1| - 0.00057 19.1 0.0 0.0018 17.5 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|564288258|ref|YP_008874474.1| - 0.003 17.1 0.0 0.0075 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|564288258|ref|YP_008874474.1| - 0.0057 15.9 0.0 0.028 13.7 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_20 PF12840.2 gi|564288258|ref|YP_008874474.1| - 0.0067 16.2 0.0 0.05 13.4 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|564288258|ref|YP_008874474.1| - 0.012 15.0 0.2 0.2 11.1 0.0 3.1 2 1 0 2 2 2 0 Sigma-70, region 4 YolD PF08863.5 gi|564288258|ref|YP_008874474.1| - 0.052 13.4 0.4 8.5 6.3 0.0 3.0 3 0 0 3 3 3 0 YolD-like protein DUF1492 PF07374.6 gi|564288258|ref|YP_008874474.1| - 0.34 11.0 1.4 26 4.9 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1492) HTH_11 PF08279.7 gi|564288260|ref|YP_008874476.1| - 0.095 12.3 0.1 0.25 11.0 0.1 1.7 1 0 0 1 1 1 0 HTH domain NTP_transferase PF00483.18 gi|564288263|ref|YP_008874479.1| - 5e-41 140.6 0.0 5.6e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|564288263|ref|YP_008874479.1| - 5.6e-15 55.7 0.0 6.6e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|564288263|ref|YP_008874479.1| - 5.2e-06 26.1 0.0 1.5e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|564288263|ref|YP_008874479.1| - 0.0098 15.5 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|564288264|ref|YP_008874481.1| - 6.2e-11 42.2 0.9 6.5e-10 38.9 0.3 2.2 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|564288264|ref|YP_008874481.1| - 3.8e-10 39.9 1.0 2.2e-09 37.4 0.7 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|564288264|ref|YP_008874481.1| - 1.4e-08 34.1 0.1 0.0033 16.5 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|564288264|ref|YP_008874481.1| - 1.6e-06 27.9 0.1 2.2e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|564288264|ref|YP_008874481.1| - 3.6e-06 26.3 1.5 7e-06 25.4 1.1 1.4 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.1 gi|564288264|ref|YP_008874481.1| - 0.0012 18.1 0.0 0.0053 16.0 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|564288264|ref|YP_008874481.1| - 0.066 12.4 0.3 8 5.6 0.0 2.1 1 1 1 2 2 2 0 Glycosyltransferase like family PMT PF02366.13 gi|564288265|ref|YP_008874482.1| - 0.077 12.3 0.0 0.088 12.1 0.0 1.0 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase GFO_IDH_MocA PF01408.17 gi|564288266|ref|YP_008874483.1| - 2.5e-21 76.4 0.0 4.2e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.1 gi|564288266|ref|YP_008874483.1| - 0.02 15.0 0.0 0.058 13.5 0.0 1.8 1 1 0 1 1 1 0 CoA binding domain DUF1349 PF07081.6 gi|564288266|ref|YP_008874483.1| - 0.11 11.7 0.1 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) Polysacc_synt PF01943.12 gi|564288267|ref|YP_008874484.1| - 2.6e-28 99.0 6.8 2.6e-28 99.0 4.7 2.7 3 1 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|564288267|ref|YP_008874484.1| - 1.4e-15 57.4 13.0 1.4e-15 57.4 9.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|564288267|ref|YP_008874484.1| - 1.8e-13 50.4 18.7 1.8e-13 50.4 13.0 3.6 4 2 2 6 6 6 1 Polysaccharide biosynthesis C-terminal domain Cadherin-like PF12733.2 gi|564288268|ref|YP_008874485.1| - 0.064 13.5 0.4 2.4 8.4 0.1 2.2 2 0 0 2 2 2 0 Cadherin-like beta sandwich domain CBM_6 PF03422.10 gi|564288269|ref|YP_008874486.1| - 1.2e-53 180.5 24.3 1.5e-19 70.3 2.2 4.9 4 1 0 4 4 4 3 Carbohydrate binding module (family 6) DUF4397 PF14344.1 gi|564288269|ref|YP_008874486.1| - 0.00018 21.8 1.2 8.7 6.6 0.0 5.1 4 1 0 4 4 4 2 Domain of unknown function (DUF4397) Glyco_hydro_114 PF03537.8 gi|564288269|ref|YP_008874486.1| - 0.00046 19.9 5.8 0.47 10.2 0.0 4.1 3 1 1 4 4 4 2 Glycoside-hydrolase family GH114 CARDB PF07705.6 gi|564288269|ref|YP_008874486.1| - 0.066 13.2 3.8 0.82 9.7 0.0 4.4 5 1 0 5 5 5 0 CARDB NESP55 PF06390.7 gi|564288269|ref|YP_008874486.1| - 3.8 6.8 10.4 7.9 5.7 7.2 1.4 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Glycos_transf_1 PF00534.15 gi|564288317|ref|YP_008874489.1| - 1.3e-37 128.8 0.0 2e-37 128.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|564288317|ref|YP_008874489.1| - 7e-22 78.0 0.1 1.3e-21 77.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|564288317|ref|YP_008874489.1| - 8e-11 42.3 0.0 3.2e-10 40.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|564288317|ref|YP_008874489.1| - 5e-08 33.1 0.0 9.7e-08 32.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|564288317|ref|YP_008874489.1| - 4.3e-06 26.5 0.0 1.3e-05 25.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 CobW_C PF07683.9 gi|564288317|ref|YP_008874489.1| - 0.069 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain Chlorosome_CsmC PF11098.3 gi|564288317|ref|YP_008874489.1| - 0.12 12.0 0.3 23 4.7 0.0 2.7 3 0 0 3 3 3 0 Chlorosome envelope protein C Sulfatase PF00884.18 gi|564288272|ref|YP_008874490.1| - 8.6e-16 57.9 0.2 7.3e-14 51.6 0.1 2.3 2 0 0 2 2 2 2 Sulfatase DUF229 PF02995.12 gi|564288272|ref|YP_008874490.1| - 0.0025 16.2 0.0 0.0031 16.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Phosphodiest PF01663.17 gi|564288272|ref|YP_008874490.1| - 0.0076 15.6 0.5 0.046 13.0 0.0 2.1 1 1 1 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Glycos_transf_2 PF00535.21 gi|564288273|ref|YP_008874491.1| - 3.6e-29 101.6 0.0 5.2e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|564288273|ref|YP_008874491.1| - 7.8e-18 65.1 0.0 1e-17 64.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|564288273|ref|YP_008874491.1| - 2.8e-09 36.4 0.0 3.7e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Rhamno_transf PF11316.3 gi|564288273|ref|YP_008874491.1| - 0.011 14.9 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative rhamnosyl transferase Atu4866 PF11512.3 gi|564288273|ref|YP_008874491.1| - 0.075 12.7 1.8 8.8 6.1 0.1 2.5 2 0 0 2 2 2 0 Agrobacterium tumefaciens protein Atu4866 PTPS_related PF10131.4 gi|564288274|ref|YP_008874492.1| - 4.2e-05 21.9 15.9 6.8e-05 21.2 11.0 1.3 1 0 0 1 1 1 1 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein PMT_2 PF13231.1 gi|564288274|ref|YP_008874492.1| - 0.002 18.0 9.5 0.002 18.0 6.6 3.2 3 1 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_1 PF00534.15 gi|564288275|ref|YP_008874493.1| - 3.5e-33 114.4 0.0 5.9e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|564288275|ref|YP_008874493.1| - 1.4e-21 77.3 0.0 3e-21 76.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|564288275|ref|YP_008874493.1| - 8.6e-20 71.2 0.0 2.8e-19 69.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|564288275|ref|YP_008874493.1| - 4.8e-19 68.7 0.0 7.1e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|564288275|ref|YP_008874493.1| - 1.3e-10 41.3 0.0 2.6e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|564288275|ref|YP_008874493.1| - 0.00076 19.3 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|564288275|ref|YP_008874493.1| - 0.0045 16.5 0.3 0.02 14.3 0.2 1.9 1 1 0 1 1 1 1 Starch synthase catalytic domain AAA_26 PF13500.1 gi|564288275|ref|YP_008874493.1| - 0.031 13.8 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Asn_synthase PF00733.16 gi|564288276|ref|YP_008874494.1| - 5.2e-71 239.1 0.2 6.9e-71 238.7 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|564288276|ref|YP_008874494.1| - 9.6e-46 154.5 0.0 2e-45 153.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|564288276|ref|YP_008874494.1| - 2.9e-43 147.0 0.0 6.3e-43 145.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|564288276|ref|YP_008874494.1| - 6.5e-05 21.8 0.0 0.2 10.3 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II DUF3700 PF12481.3 gi|564288276|ref|YP_008874494.1| - 0.019 14.1 0.0 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 Aluminium induced protein QueC PF06508.8 gi|564288276|ref|YP_008874494.1| - 0.023 13.9 0.0 0.045 13.0 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Glycos_transf_1 PF00534.15 gi|564288277|ref|YP_008874495.1| - 1.6e-32 112.3 0.0 2.9e-32 111.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|564288277|ref|YP_008874495.1| - 1.1e-21 77.3 0.0 2.9e-21 76.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|564288277|ref|YP_008874495.1| - 3.6e-19 69.1 0.0 5.7e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|564288277|ref|YP_008874495.1| - 4.1e-19 69.2 0.1 2e-18 67.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|564288277|ref|YP_008874495.1| - 4.4e-07 30.0 0.0 1.3e-06 28.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|564288277|ref|YP_008874495.1| - 0.0025 17.6 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_20 PF00982.16 gi|564288277|ref|YP_008874495.1| - 0.17 10.3 0.0 1.9 6.8 0.0 2.1 2 0 0 2 2 2 0 Glycosyltransferase family 20 DUF1616 PF07760.6 gi|564288318|ref|YP_008874496.1| - 1.2e-61 208.3 0.3 1.5e-61 208.0 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1129 PF06570.6 gi|564288318|ref|YP_008874496.1| - 0.039 13.2 1.2 0.071 12.4 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4381 PF14316.1 gi|564288318|ref|YP_008874496.1| - 0.11 12.5 0.3 5.9 6.9 0.1 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) Bax1-I PF01027.15 gi|564288318|ref|YP_008874496.1| - 0.6 9.6 9.2 2.1 7.9 6.7 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Glycos_transf_2 PF00535.21 gi|564288278|ref|YP_008874497.1| - 1e-19 70.8 0.1 1.9e-09 37.4 0.1 2.1 1 1 1 2 2 2 2 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|564288278|ref|YP_008874497.1| - 1.7e-05 24.7 0.3 0.015 15.1 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|564288278|ref|YP_008874497.1| - 0.011 16.0 0.0 0.029 14.6 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase family 2 BTG PF07742.7 gi|564288278|ref|YP_008874497.1| - 0.02 14.3 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 BTG family CARDB PF07705.6 gi|564288279|ref|YP_008874498.1| - 1.1e-16 60.6 20.9 6.7e-05 22.8 0.2 4.5 4 0 0 4 4 4 4 CARDB Fn3-like PF14310.1 gi|564288279|ref|YP_008874498.1| - 0.00014 21.7 4.5 0.95 9.4 0.0 5.2 5 1 0 5 5 5 2 Fibronectin type III-like domain Cupredoxin_1 PF13473.1 gi|564288279|ref|YP_008874498.1| - 0.00053 19.8 1.4 1.8 8.5 0.0 4.7 3 3 2 5 5 5 1 Cupredoxin-like domain BsuPI PF12690.2 gi|564288279|ref|YP_008874498.1| - 0.0012 18.5 1.5 15 5.3 0.0 5.1 5 0 0 5 5 5 1 Intracellular proteinase inhibitor A2M PF00207.17 gi|564288279|ref|YP_008874498.1| - 0.0023 17.4 1.3 2.2 7.9 0.0 3.4 3 0 0 3 3 3 2 Alpha-2-macroglobulin family DUF3872 PF12988.2 gi|564288279|ref|YP_008874498.1| - 0.026 14.0 1.5 5 6.6 0.0 4.1 5 1 0 5 5 5 0 Domain of unknown function, B. Theta Gene description (DUF3872) DUF11 PF01345.13 gi|564288279|ref|YP_008874498.1| - 0.046 13.7 0.2 0.046 13.7 0.1 5.5 5 2 1 6 6 6 0 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|564288279|ref|YP_008874498.1| - 0.048 13.6 1.1 10 6.2 0.0 3.5 3 1 0 3 3 3 0 Transglutaminase family, C-terminal ig like domain Dicty_REP PF05086.7 gi|564288279|ref|YP_008874498.1| - 2 6.0 4.4 3.6 5.2 3.0 1.3 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein HTH_45 PF14947.1 gi|564288280|ref|YP_008874499.1| - 6.1e-06 25.9 0.0 7.8e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|564288280|ref|YP_008874499.1| - 2.1e-05 24.7 0.2 2.6e-05 24.4 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|564288280|ref|YP_008874499.1| - 7.9e-05 22.3 0.3 0.0001 22.0 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|564288280|ref|YP_008874499.1| - 0.00097 18.7 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|564288280|ref|YP_008874499.1| - 0.01 15.5 0.5 0.014 15.0 0.3 1.2 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.1 gi|564288280|ref|YP_008874499.1| - 0.011 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF4364 PF14277.1 gi|564288280|ref|YP_008874499.1| - 0.02 14.4 0.0 0.026 14.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_Crp_2 PF13545.1 gi|564288280|ref|YP_008874499.1| - 0.025 14.3 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|564288280|ref|YP_008874499.1| - 0.044 13.4 0.0 0.1 12.3 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|564288280|ref|YP_008874499.1| - 0.066 12.8 0.1 0.094 12.3 0.1 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.9 gi|564288280|ref|YP_008874499.1| - 0.073 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_1 PF00126.22 gi|564288280|ref|YP_008874499.1| - 0.099 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family FUR PF01475.14 gi|564288280|ref|YP_008874499.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_34 PF13601.1 gi|564288280|ref|YP_008874499.1| - 0.11 12.5 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain E2F_TDP PF02319.15 gi|564288280|ref|YP_008874499.1| - 0.11 12.0 0.4 0.14 11.7 0.3 1.4 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Ribosomal_L21e PF01157.13 gi|564288280|ref|YP_008874499.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L21e Mrr_N PF14338.1 gi|564288281|ref|YP_008874500.1| - 0.011 15.7 0.0 0.028 14.4 0.0 1.6 1 1 0 1 1 1 0 Mrr N-terminal domain DUF3040 PF11239.3 gi|564288281|ref|YP_008874500.1| - 0.012 15.6 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) HTH_20 PF12840.2 gi|564288281|ref|YP_008874500.1| - 0.025 14.3 0.0 0.06 13.1 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|564288281|ref|YP_008874500.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF2892 PF11127.3 gi|564288281|ref|YP_008874500.1| - 1.1 9.1 6.1 1.9 8.3 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Amidohydro_4 PF13147.1 gi|564288282|ref|YP_008874501.1| - 1.1e-23 84.6 4.1 1.8e-23 83.9 2.9 1.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|564288282|ref|YP_008874501.1| - 5.3e-10 38.9 0.2 1.5e-09 37.4 0.1 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|564288282|ref|YP_008874501.1| - 0.013 14.6 6.3 0.014 14.6 0.5 2.9 2 2 0 2 2 2 0 Amidohydrolase family Amidohydro_1 PF01979.15 gi|564288282|ref|YP_008874501.1| - 0.02 14.5 0.6 0.12 12.0 0.0 2.2 2 1 0 2 2 2 0 Amidohydrolase family MR_MLE_C PF13378.1 gi|564288282|ref|YP_008874501.1| - 0.077 12.9 0.0 0.77 9.7 0.0 2.5 1 1 1 2 2 2 0 Enolase C-terminal domain-like GFO_IDH_MocA PF01408.17 gi|564288283|ref|YP_008874503.1| - 2.8e-22 79.4 0.0 6e-22 78.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|564288283|ref|YP_008874503.1| - 0.017 14.9 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain ADH_zinc_N PF00107.21 gi|564288283|ref|YP_008874503.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Hydrolase_6 PF13344.1 gi|564288284|ref|YP_008874504.1| - 4e-23 81.2 0.0 2.6e-22 78.6 0.0 2.3 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.23 gi|564288284|ref|YP_008874504.1| - 7.7e-18 64.4 0.1 1.5e-17 63.5 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.1 gi|564288284|ref|YP_008874504.1| - 2.1e-13 49.7 0.1 4.6e-13 48.6 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|564288284|ref|YP_008874504.1| - 1.3e-06 28.9 0.2 3.2e-05 24.4 0.2 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|564288284|ref|YP_008874504.1| - 1.6e-05 25.2 0.2 0.004 17.4 0.0 2.4 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase NUDIX_4 PF14815.1 gi|564288284|ref|YP_008874504.1| - 0.042 13.2 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 NUDIX domain Synuclein PF01387.12 gi|564288284|ref|YP_008874504.1| - 0.072 13.0 0.0 8.6 6.2 0.0 2.6 3 0 0 3 3 3 0 Synuclein Peripla_BP_2 PF01497.13 gi|564288285|ref|YP_008874506.1| - 2.7e-11 43.0 0.0 6e-11 41.9 0.0 1.6 2 0 0 2 2 2 1 Periplasmic binding protein MarR_2 PF12802.2 gi|564288286|ref|YP_008874507.1| - 4.4e-08 32.6 0.1 1.1e-07 31.4 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|564288286|ref|YP_008874507.1| - 1.9e-07 30.6 0.1 3.9e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|564288286|ref|YP_008874507.1| - 0.00012 21.5 0.0 0.00027 20.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|564288286|ref|YP_008874507.1| - 0.00035 19.9 0.0 0.00075 18.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|564288286|ref|YP_008874507.1| - 0.00037 20.1 0.1 0.00063 19.3 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|564288286|ref|YP_008874507.1| - 0.00055 19.2 0.0 0.00086 18.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RepL PF05732.6 gi|564288286|ref|YP_008874507.1| - 0.0029 16.8 0.0 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_27 PF13463.1 gi|564288286|ref|YP_008874507.1| - 0.003 17.8 0.0 0.0061 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|564288286|ref|YP_008874507.1| - 0.0034 17.1 0.1 0.011 15.4 0.0 1.7 1 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|564288286|ref|YP_008874507.1| - 0.0055 16.3 0.1 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|564288286|ref|YP_008874507.1| - 0.0086 15.7 0.0 0.022 14.4 0.0 1.7 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|564288286|ref|YP_008874507.1| - 0.0092 15.7 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|564288286|ref|YP_008874507.1| - 0.013 15.0 0.1 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Crp PF00325.15 gi|564288286|ref|YP_008874507.1| - 0.034 13.6 0.1 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family RNA_pol_Rpc34 PF05158.7 gi|564288286|ref|YP_008874507.1| - 0.036 13.2 0.0 0.052 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_36 PF13730.1 gi|564288286|ref|YP_008874507.1| - 0.036 14.1 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|564288286|ref|YP_008874507.1| - 0.059 13.4 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor TBPIP PF07106.8 gi|564288286|ref|YP_008874507.1| - 0.078 12.5 0.0 0.11 11.9 0.0 1.3 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Trp_repressor PF01371.14 gi|564288286|ref|YP_008874507.1| - 0.082 12.8 0.1 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 Trp repressor protein HTH_38 PF13936.1 gi|564288286|ref|YP_008874507.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|564288286|ref|YP_008874507.1| - 0.14 12.3 0.4 0.71 10.0 0.0 2.3 3 0 0 3 3 3 0 Winged helix-turn helix DUF4367 PF14285.1 gi|564288288|ref|YP_008874509.1| - 0.044 13.0 0.7 0.18 11.1 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4367) Metallophos_C PF14008.1 gi|564288288|ref|YP_008874509.1| - 0.31 11.1 2.0 5.5 7.1 1.4 2.7 1 1 0 1 1 1 0 Iron/zinc purple acid phosphatase-like protein C Oxidored_q6 PF01058.17 gi|564288289|ref|YP_008874510.1| - 9.2e-22 77.0 0.1 1.3e-21 76.5 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HTH_10 PF04967.7 gi|564288290|ref|YP_008874511.1| - 8.5e-17 60.4 0.0 1.3e-16 59.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.1 gi|564288290|ref|YP_008874511.1| - 0.00027 20.3 0.0 0.00054 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|564288290|ref|YP_008874511.1| - 0.0006 19.4 0.0 0.0018 17.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|564288290|ref|YP_008874511.1| - 0.0022 17.7 0.0 0.01 15.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|564288290|ref|YP_008874511.1| - 0.0034 16.8 0.0 0.012 15.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|564288290|ref|YP_008874511.1| - 0.0034 16.6 0.0 0.012 14.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_1 PF00126.22 gi|564288290|ref|YP_008874511.1| - 0.0047 16.6 0.0 0.0088 15.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.15 gi|564288290|ref|YP_008874511.1| - 0.0053 16.4 0.0 0.0089 15.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|564288290|ref|YP_008874511.1| - 0.009 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|564288290|ref|YP_008874511.1| - 0.013 14.6 0.0 0.024 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_30 PF13556.1 gi|564288290|ref|YP_008874511.1| - 0.051 13.1 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Fe_dep_repress PF01325.14 gi|564288290|ref|YP_008874511.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|564288290|ref|YP_008874511.1| - 0.15 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding