#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA_22	PF13401.1	gi|564287834|ref|YP_008874026.1|	-	3.7e-14	52.9	0.5	6.3e-14	52.2	0.0	1.5	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|564287834|ref|YP_008874026.1|	-	1.5e-13	51.1	0.2	6.3e-13	49.1	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|564287834|ref|YP_008874026.1|	-	1.2e-06	28.6	0.2	5.6e-06	26.5	0.2	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.8	gi|564287834|ref|YP_008874026.1|	-	1.6e-05	24.0	0.1	4.2e-05	22.5	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.21	gi|564287834|ref|YP_008874026.1|	-	2.3e-05	23.9	0.0	0.00024	20.6	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|564287834|ref|YP_008874026.1|	-	9.1e-05	22.2	0.0	0.00013	21.7	0.0	1.4	1	1	0	1	1	1	1	Archaeal	ATPase
KAP_NTPase	PF07693.9	gi|564287834|ref|YP_008874026.1|	-	0.0003	19.8	0.2	0.0039	16.2	0.0	1.9	1	1	1	2	2	2	1	KAP	family	P-loop	domain
AAA_5	PF07728.9	gi|564287834|ref|YP_008874026.1|	-	0.00097	18.8	0.3	0.0038	16.9	0.2	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.7	gi|564287834|ref|YP_008874026.1|	-	0.0013	18.4	0.0	0.002	17.8	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activ_2	PF14532.1	gi|564287834|ref|YP_008874026.1|	-	0.0023	17.9	0.0	0.012	15.7	0.0	1.9	1	1	1	2	2	2	1	Sigma-54	interaction	domain
AAA_2	PF07724.9	gi|564287834|ref|YP_008874026.1|	-	0.0028	17.5	0.6	0.0043	16.9	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
RNA_helicase	PF00910.17	gi|564287834|ref|YP_008874026.1|	-	0.0047	17.0	0.1	0.0094	16.1	0.0	1.6	1	1	0	1	1	1	1	RNA	helicase
NB-ARC	PF00931.17	gi|564287834|ref|YP_008874026.1|	-	0.0054	15.6	0.0	0.0074	15.1	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
DEAD	PF00270.24	gi|564287834|ref|YP_008874026.1|	-	0.02	14.4	3.5	0.59	9.6	0.6	2.7	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
PhoH	PF02562.11	gi|564287834|ref|YP_008874026.1|	-	0.023	13.9	0.1	4.4	6.4	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
DUF87	PF01935.12	gi|564287834|ref|YP_008874026.1|	-	0.044	13.5	0.8	0.1	12.3	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_24	PF13479.1	gi|564287834|ref|YP_008874026.1|	-	0.047	13.2	0.1	0.068	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|564287834|ref|YP_008874026.1|	-	0.053	12.4	0.0	0.1	11.4	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NTPase_1	PF03266.10	gi|564287834|ref|YP_008874026.1|	-	0.055	13.1	0.2	0.11	12.1	0.1	1.6	1	1	0	1	1	1	0	NTPase
AAA_32	PF13654.1	gi|564287834|ref|YP_008874026.1|	-	0.062	11.9	0.6	0.29	9.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|564287834|ref|YP_008874026.1|	-	0.062	12.4	0.0	0.15	11.2	0.0	1.6	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
PIF1	PF05970.9	gi|564287834|ref|YP_008874026.1|	-	0.094	11.6	0.0	0.19	10.6	0.0	1.5	1	1	0	1	1	1	0	PIF1-like	helicase
Zot	PF05707.7	gi|564287834|ref|YP_008874026.1|	-	0.094	12.1	0.0	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
FtsK_SpoIIIE	PF01580.13	gi|564287834|ref|YP_008874026.1|	-	0.12	11.8	0.0	0.23	10.9	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF2075	PF09848.4	gi|564287834|ref|YP_008874026.1|	-	0.16	10.9	2.2	0.14	11.0	0.1	1.9	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Phage_integrase	PF00589.17	gi|564287836|ref|YP_008874028.1|	-	4.1e-13	49.3	0.0	1.8e-12	47.3	0.0	2.0	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.12	gi|564287836|ref|YP_008874028.1|	-	1.7e-05	24.8	0.1	6.1e-05	23.0	0.1	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.1	gi|564287836|ref|YP_008874028.1|	-	0.0012	19.1	0.0	0.0027	18.0	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3435	PF11917.3	gi|564287836|ref|YP_008874028.1|	-	0.046	12.4	0.0	0.2	10.3	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3435)
DDE_Tnp_1	PF01609.16	gi|564287837|ref|YP_008874029.1|	-	1.2e-11	44.5	0.9	2.1e-11	43.7	0.3	1.5	2	0	0	2	2	2	1	Transposase	DDE	domain
DUF772	PF05598.6	gi|564287837|ref|YP_008874029.1|	-	2.6e-05	24.0	0.2	9.8e-05	22.1	0.0	2.1	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
PRA1	PF03208.14	gi|564287930|ref|YP_008874030.1|	-	0.036	13.4	0.2	0.037	13.3	0.1	1.0	1	0	0	1	1	1	0	PRA1	family	protein
DUF3687	PF12459.3	gi|564287930|ref|YP_008874030.1|	-	0.11	11.7	0.1	0.19	11.0	0.1	1.4	1	0	0	1	1	1	0	D-Ala-teichoic	acid	biosynthesis	protein
FixQ	PF05545.6	gi|564287930|ref|YP_008874030.1|	-	1.4	8.6	4.9	0.46	10.1	0.2	2.0	1	1	1	2	2	2	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Fic	PF02661.13	gi|564287838|ref|YP_008874031.1|	-	3e-25	88.7	0.0	1.7e-24	86.3	0.0	2.2	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.1	gi|564287838|ref|YP_008874031.1|	-	1.2e-23	82.7	0.0	2.6e-23	81.6	0.0	1.6	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_27	PF13463.1	gi|564287838|ref|YP_008874031.1|	-	0.024	14.9	0.0	0.1	12.9	0.0	2.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_17	PF12728.2	gi|564287838|ref|YP_008874031.1|	-	0.028	14.6	0.0	0.071	13.3	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ftsk_gamma	PF09397.5	gi|564287838|ref|YP_008874031.1|	-	0.064	12.9	0.0	0.18	11.5	0.0	1.7	1	0	0	1	1	1	0	Ftsk	gamma	domain
Usp	PF00582.21	gi|564287931|ref|YP_008874032.1|	-	0.00011	22.3	0.1	0.21	11.8	0.0	2.5	1	1	1	2	2	2	2	Universal	stress	protein	family
TP_methylase	PF00590.15	gi|564287931|ref|YP_008874032.1|	-	0.11	12.2	0.0	0.28	10.8	0.0	1.7	2	0	0	2	2	2	0	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TrkA_N	PF02254.13	gi|564287839|ref|YP_008874033.1|	-	4.4e-25	87.9	1.2	7.6e-25	87.1	0.8	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|564287839|ref|YP_008874033.1|	-	3.7e-08	32.8	1.5	6.2e-08	32.1	0.1	2.1	2	0	0	2	2	2	1	TrkA-C	domain
Pyr_redox	PF00070.22	gi|564287839|ref|YP_008874033.1|	-	3.9e-08	33.5	0.1	8.3e-08	32.5	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_10	PF13460.1	gi|564287839|ref|YP_008874033.1|	-	8.7e-07	29.1	1.1	8.7e-07	29.1	0.8	1.6	2	1	0	2	2	1	1	NADH(P)-binding
NAD_binding_7	PF13241.1	gi|564287839|ref|YP_008874033.1|	-	3.8e-06	27.0	0.1	6.8e-06	26.2	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
DAO	PF01266.19	gi|564287839|ref|YP_008874033.1|	-	1.9e-05	23.7	0.5	2.4e-05	23.4	0.4	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|564287839|ref|YP_008874033.1|	-	0.00011	21.4	0.1	0.00024	20.2	0.1	1.5	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|564287839|ref|YP_008874033.1|	-	0.00041	20.3	0.3	0.014	15.3	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.9	gi|564287839|ref|YP_008874033.1|	-	0.00069	19.0	0.2	0.0016	17.8	0.1	1.7	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Thi4	PF01946.12	gi|564287839|ref|YP_008874033.1|	-	0.0011	18.0	0.6	0.0064	15.6	0.1	2.0	1	1	0	2	2	2	1	Thi4	family
3HCDH_N	PF02737.13	gi|564287839|ref|YP_008874033.1|	-	0.0013	18.4	0.2	0.0023	17.5	0.1	1.5	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.8	gi|564287839|ref|YP_008874033.1|	-	0.0014	17.9	0.1	0.0022	17.2	0.1	1.3	1	0	0	1	1	1	1	NmrA-like	family
NAD_Gly3P_dh_N	PF01210.18	gi|564287839|ref|YP_008874033.1|	-	0.0055	16.4	0.3	0.013	15.2	0.0	1.8	3	0	0	3	3	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Glyco_trans_4_4	PF13579.1	gi|564287839|ref|YP_008874033.1|	-	0.0056	16.8	0.5	0.4	10.8	0.3	2.8	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Saccharop_dh	PF03435.13	gi|564287839|ref|YP_008874033.1|	-	0.0084	15.1	0.4	0.012	14.6	0.3	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
Pyr_redox_2	PF07992.9	gi|564287839|ref|YP_008874033.1|	-	0.012	15.5	0.1	0.016	15.1	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Rossmann-like	PF10727.4	gi|564287839|ref|YP_008874033.1|	-	0.014	15.1	1.6	3.2	7.4	0.1	2.5	1	1	1	2	2	2	0	Rossmann-like	domain
HI0933_like	PF03486.9	gi|564287839|ref|YP_008874033.1|	-	0.015	13.7	0.1	0.022	13.2	0.0	1.2	1	0	0	1	1	1	0	HI0933-like	protein
AlaDh_PNT_C	PF01262.16	gi|564287839|ref|YP_008874033.1|	-	0.021	14.3	0.0	0.032	13.7	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.9	gi|564287839|ref|YP_008874033.1|	-	0.026	13.1	0.1	0.033	12.8	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
ApbA	PF02558.11	gi|564287839|ref|YP_008874033.1|	-	0.041	13.3	0.1	0.071	12.5	0.1	1.6	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
RrnaAD	PF00398.15	gi|564287839|ref|YP_008874033.1|	-	0.06	12.3	0.0	0.11	11.5	0.0	1.4	1	1	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
FAD_binding_2	PF00890.19	gi|564287839|ref|YP_008874033.1|	-	0.077	11.8	0.7	0.08	11.7	0.5	1.1	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|564287839|ref|YP_008874033.1|	-	0.077	13.0	0.0	0.17	11.8	0.0	1.5	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
XdhC_C	PF13478.1	gi|564287839|ref|YP_008874033.1|	-	0.08	13.2	0.1	0.18	12.1	0.0	1.7	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Glyco_transf_4	PF13439.1	gi|564287839|ref|YP_008874033.1|	-	0.1	12.2	0.0	0.19	11.4	0.0	1.5	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
AA_permease_2	PF13520.1	gi|564287840|ref|YP_008874034.1|	-	4.8e-52	176.9	42.9	5.9e-52	176.6	29.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|564287840|ref|YP_008874034.1|	-	2.2e-46	158.2	40.0	2.7e-46	157.9	27.7	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Trp_Tyr_perm	PF03222.8	gi|564287840|ref|YP_008874034.1|	-	0.56	8.9	36.6	0.13	11.0	19.2	2.9	1	1	0	2	2	2	0	Tryptophan/tyrosine	permease	family
TrkA_N	PF02254.13	gi|564287841|ref|YP_008874035.1|	-	2.8e-32	111.1	8.8	2e-16	60.0	0.2	2.6	2	0	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.16	gi|564287841|ref|YP_008874035.1|	-	1.5e-21	75.7	1.2	4.7e-11	42.1	0.0	3.8	3	0	0	3	3	3	2	TrkA-C	domain
KH_1	PF00013.24	gi|564287841|ref|YP_008874035.1|	-	0.0075	15.8	0.2	1.9	8.1	0.0	3.2	2	0	0	2	2	2	1	KH	domain
IlvN	PF07991.7	gi|564287841|ref|YP_008874035.1|	-	0.089	12.1	0.6	4.9	6.4	0.1	2.2	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
HTH_13	PF11972.3	gi|564287841|ref|YP_008874035.1|	-	0.13	12.1	0.3	0.39	10.5	0.0	2.0	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Ion_trans_2	PF07885.11	gi|564287841|ref|YP_008874035.1|	-	2.1	8.0	7.7	4	7.2	5.4	1.5	1	0	0	1	1	1	0	Ion	channel
DisA_N	PF02457.11	gi|564287842|ref|YP_008874036.1|	-	2e-07	30.1	0.1	2.9e-07	29.6	0.1	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Na_H_Exchanger	PF00999.16	gi|564287843|ref|YP_008874037.1|	-	1.8e-20	72.8	22.5	2.3e-20	72.4	15.6	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF2678	PF10856.3	gi|564287843|ref|YP_008874037.1|	-	0.3	10.8	2.2	0.42	10.3	0.4	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2678)
TrkA_C	PF02080.16	gi|564287932|ref|YP_008874038.1|	-	3.2e-13	49.0	1.3	5.8e-13	48.2	0.9	1.5	1	0	0	1	1	1	1	TrkA-C	domain
TrkA_N	PF02254.13	gi|564287932|ref|YP_008874038.1|	-	9.6e-09	35.2	4.0	6.9e-08	32.4	0.4	2.8	2	1	0	2	2	2	1	TrkA-N	domain
ADH_zinc_N	PF00107.21	gi|564287932|ref|YP_008874038.1|	-	0.0018	17.7	0.1	0.0062	16.0	0.0	1.9	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
Gemin7	PF11095.3	gi|564287932|ref|YP_008874038.1|	-	0.014	15.1	0.1	0.029	14.0	0.1	1.6	1	0	0	1	1	1	0	Gem-associated	protein	7	(Gemin7)
TrkH	PF02386.11	gi|564287844|ref|YP_008874039.1|	-	1.7e-47	161.7	22.6	4.2e-47	160.4	9.9	2.2	2	0	0	2	2	2	2	Cation	transport	protein
Usp	PF00582.21	gi|564287845|ref|YP_008874041.1|	-	6.5e-11	42.5	0.4	7.9e-11	42.3	0.3	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
ApoA-II	PF04711.8	gi|564287845|ref|YP_008874041.1|	-	0.062	13.2	0.0	0.17	11.7	0.0	1.8	1	1	0	1	1	1	0	Apolipoprotein	A-II	(ApoA-II)
DUF1179	PF06678.6	gi|564287845|ref|YP_008874041.1|	-	0.083	13.1	0.0	0.2	11.9	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1179)
AA_permease_2	PF13520.1	gi|564287846|ref|YP_008874042.1|	-	5.4e-47	160.2	44.9	7.1e-47	159.8	31.2	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|564287846|ref|YP_008874042.1|	-	4.1e-38	130.9	44.6	8.3e-38	129.9	30.9	1.4	1	1	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.21	gi|564287846|ref|YP_008874042.1|	-	3.1e-18	66.3	4.6	1.8e-10	41.1	0.4	3.0	2	1	0	2	2	2	2	Universal	stress	protein	family
Trp_Tyr_perm	PF03222.8	gi|564287846|ref|YP_008874042.1|	-	6.2e-08	31.8	24.8	1e-07	31.1	17.2	1.2	1	0	0	1	1	1	1	Tryptophan/tyrosine	permease	family
AA_permease_C	PF13906.1	gi|564287846|ref|YP_008874042.1|	-	8.2	6.3	10.0	0.36	10.7	2.3	2.4	2	0	0	2	2	2	0	C-terminus	of	AA_permease
DUF1097	PF06496.6	gi|564287934|ref|YP_008874043.1|	-	0.0097	15.7	1.8	0.011	15.5	1.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1097)
EmrE	PF13536.1	gi|564287934|ref|YP_008874043.1|	-	0.014	15.6	3.0	0.016	15.4	2.1	1.0	1	0	0	1	1	1	0	Multidrug	resistance	efflux	transporter
PAP2	PF01569.16	gi|564287934|ref|YP_008874043.1|	-	0.031	13.9	2.1	0.033	13.8	1.5	1.1	1	0	0	1	1	1	0	PAP2	superfamily
DUF1129	PF06570.6	gi|564287934|ref|YP_008874043.1|	-	0.06	12.6	2.2	0.066	12.5	1.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
Cation_efflux	PF01545.16	gi|564287934|ref|YP_008874043.1|	-	0.061	12.3	2.6	0.061	12.3	1.8	1.0	1	0	0	1	1	1	0	Cation	efflux	family
DUF4191	PF13829.1	gi|564287934|ref|YP_008874043.1|	-	0.4	9.7	2.3	0.39	9.7	1.6	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
YqhR	PF11085.3	gi|564287934|ref|YP_008874043.1|	-	0.4	10.1	3.4	0.4	10.1	2.3	1.0	1	0	0	1	1	1	0	Conserved	membrane	protein	YqhR
Herpes_LMP1	PF05297.6	gi|564287934|ref|YP_008874043.1|	-	0.61	8.9	2.3	0.65	8.8	1.6	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF2628	PF10947.3	gi|564287934|ref|YP_008874043.1|	-	0.68	9.7	3.4	0.8	9.5	2.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
Halogen_Hydrol	PF10112.4	gi|564287934|ref|YP_008874043.1|	-	3.1	7.1	5.2	3.4	7.0	3.6	1.0	1	0	0	1	1	1	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
CbiA	PF01656.18	gi|564287847|ref|YP_008874044.1|	-	8.5e-20	70.9	0.0	1e-19	70.6	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|564287847|ref|YP_008874044.1|	-	1.3e-06	28.3	0.0	8.1e-06	25.8	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|564287847|ref|YP_008874044.1|	-	0.00026	20.1	0.2	0.00047	19.2	0.1	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|564287847|ref|YP_008874044.1|	-	0.00027	20.0	0.1	0.023	13.7	0.0	2.2	2	0	0	2	2	2	1	ATPase	MipZ
YhjQ	PF06564.7	gi|564287847|ref|YP_008874044.1|	-	0.0025	17.1	0.2	0.009	15.3	0.1	1.9	1	1	0	1	1	1	1	YhjQ	protein
AAA_25	PF13481.1	gi|564287847|ref|YP_008874044.1|	-	0.058	12.7	0.1	0.11	11.8	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
Fer4_NifH	PF00142.13	gi|564287847|ref|YP_008874044.1|	-	0.082	12.0	0.0	0.21	10.7	0.0	1.6	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_16	PF13191.1	gi|564287847|ref|YP_008874044.1|	-	0.088	12.7	0.0	0.19	11.7	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
Osteopontin	PF00865.13	gi|564287848|ref|YP_008874045.1|	-	0.15	11.2	4.3	0.18	10.9	3.0	1.1	1	0	0	1	1	1	0	Osteopontin
ATP-grasp_4	PF13535.1	gi|564287850|ref|YP_008874047.1|	-	0.036	13.8	0.4	0.62	9.7	0.0	2.2	2	0	0	2	2	2	0	ATP-grasp	domain
Pentapeptide_3	PF13576.1	gi|564287851|ref|YP_008874048.1|	-	1.7e-44	149.4	88.8	4.3e-09	36.1	1.9	9.6	8	2	2	10	10	10	7	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.11	gi|564287851|ref|YP_008874048.1|	-	2.4e-06	27.1	3.9	2.4e-06	27.1	2.7	2.3	1	1	1	2	2	2	1	Ion	channel
Pentapeptide_4	PF13599.1	gi|564287851|ref|YP_008874048.1|	-	0.004	16.9	44.5	3.1	7.6	5.4	7.3	4	2	0	5	5	5	2	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.17	gi|564287851|ref|YP_008874048.1|	-	0.052	12.8	14.0	3.3	7.0	0.2	7.3	7	0	0	7	7	7	0	Pentapeptide	repeats	(8	copies)
DUF3060	PF11259.3	gi|564287852|ref|YP_008874049.1|	-	0.26	10.9	9.2	1.5	8.4	3.8	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3060)
DUF2617	PF10936.3	gi|564287853|ref|YP_008874050.1|	-	1.5e-06	27.9	1.9	0.00011	21.7	1.3	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF2617
Spermine_synth	PF01564.12	gi|564287854|ref|YP_008874051.1|	-	2.5e-17	62.6	0.0	3.6e-17	62.1	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Cytochrom_B558a	PF05038.8	gi|564287854|ref|YP_008874051.1|	-	0.015	14.9	1.0	2.9	7.4	0.1	2.4	2	0	0	2	2	2	0	Cytochrome	Cytochrome	b558	alpha-subunit
Methyltransf_30	PF05430.6	gi|564287854|ref|YP_008874051.1|	-	0.043	13.5	0.0	0.079	12.6	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
TAT_signal	PF10518.4	gi|564287855|ref|YP_008874052.1|	-	4.9	7.4	7.8	0.18	11.8	0.8	2.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Abi	PF02517.11	gi|564287856|ref|YP_008874053.1|	-	1.5e-13	50.7	5.6	1.5e-13	50.7	3.9	2.8	3	1	0	3	3	3	1	CAAX	protease	self-immunity
DUF4282	PF14110.1	gi|564287856|ref|YP_008874053.1|	-	1.9	8.7	15.1	1.2	9.3	0.0	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4282)
DUF2105	PF09878.4	gi|564287856|ref|YP_008874053.1|	-	7.7	6.0	12.8	0.18	11.3	0.6	2.6	3	0	0	3	3	3	0	Predicted	membrane	protein	(DUF2105)
MerC	PF03203.9	gi|564287857|ref|YP_008874054.1|	-	0.17	12.2	0.9	0.28	11.5	0.3	1.5	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
DUF1129	PF06570.6	gi|564287857|ref|YP_008874054.1|	-	0.25	10.6	1.3	0.31	10.3	0.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
HTH_20	PF12840.2	gi|564287858|ref|YP_008874055.1|	-	1.5e-06	27.8	0.1	2.9e-06	26.9	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|564287858|ref|YP_008874055.1|	-	4.5e-06	26.2	0.1	8e-06	25.4	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.1	gi|564287858|ref|YP_008874055.1|	-	5.5e-06	25.8	0.2	1.4e-05	24.5	0.2	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|564287858|ref|YP_008874055.1|	-	9e-05	22.0	0.0	0.00026	20.5	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
PadR	PF03551.9	gi|564287858|ref|YP_008874055.1|	-	0.00016	21.3	0.3	0.00032	20.4	0.1	1.5	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|564287858|ref|YP_008874055.1|	-	0.00019	21.0	0.0	0.00088	18.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_ISL3	PF13542.1	gi|564287858|ref|YP_008874055.1|	-	0.0015	17.6	0.0	0.0031	16.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF2513	PF10711.4	gi|564287858|ref|YP_008874055.1|	-	0.0064	16.5	0.0	0.011	15.8	0.0	1.4	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
HTH_IclR	PF09339.5	gi|564287858|ref|YP_008874055.1|	-	0.0077	15.8	0.0	0.016	14.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|564287858|ref|YP_008874055.1|	-	0.011	15.3	0.0	0.024	14.3	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_27	PF13463.1	gi|564287858|ref|YP_008874055.1|	-	0.02	15.2	0.0	0.036	14.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|564287858|ref|YP_008874055.1|	-	0.021	14.1	0.0	0.035	13.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|564287858|ref|YP_008874055.1|	-	0.028	14.0	0.2	0.11	12.2	0.0	1.9	2	0	0	2	2	2	0	MarR	family
Fe_dep_repress	PF01325.14	gi|564287858|ref|YP_008874055.1|	-	0.14	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_30	PF13556.1	gi|564287858|ref|YP_008874055.1|	-	0.15	11.6	0.2	0.76	9.4	0.0	2.1	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
Glyco_transf_21	PF13506.1	gi|564287859|ref|YP_008874056.1|	-	2.2e-11	43.3	0.0	3.8e-11	42.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.21	gi|564287859|ref|YP_008874056.1|	-	5.9e-06	26.0	0.0	1.2e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|564287859|ref|YP_008874056.1|	-	0.0091	15.8	0.1	0.019	14.7	0.0	1.5	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
UPF0547	PF10571.4	gi|564287860|ref|YP_008874057.1|	-	0.00056	19.5	0.5	0.0036	16.9	0.3	1.9	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
DUF1610	PF07754.6	gi|564287860|ref|YP_008874057.1|	-	0.021	14.9	0.4	0.021	14.9	0.3	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
A2L_zn_ribbon	PF08792.5	gi|564287860|ref|YP_008874057.1|	-	0.026	13.9	1.2	0.99	8.9	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Rubredoxin	PF00301.15	gi|564287860|ref|YP_008874057.1|	-	0.027	14.3	0.4	5.1	7.0	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin
zf-ribbon_3	PF13248.1	gi|564287860|ref|YP_008874057.1|	-	0.032	13.4	0.5	0.73	9.1	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|564287860|ref|YP_008874057.1|	-	0.052	12.8	0.8	3.4	7.0	0.0	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
Auto_anti-p27	PF06677.7	gi|564287860|ref|YP_008874057.1|	-	0.054	13.2	0.3	5.2	6.9	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.2	gi|564287860|ref|YP_008874057.1|	-	0.11	12.2	0.4	0.53	10.1	0.3	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|564287860|ref|YP_008874057.1|	-	0.13	12.0	0.1	9.8	6.0	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|564287860|ref|YP_008874057.1|	-	0.16	11.4	0.5	5.7	6.5	0.0	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
C1_3	PF07649.7	gi|564287860|ref|YP_008874057.1|	-	0.17	11.9	2.2	6.4	6.8	0.0	2.2	2	0	0	2	2	2	0	C1-like	domain
zf-TFIIB	PF13453.1	gi|564287860|ref|YP_008874057.1|	-	0.21	10.8	0.9	1	8.6	0.6	2.0	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-RING_3	PF14369.1	gi|564287860|ref|YP_008874057.1|	-	0.37	10.8	1.9	12	6.0	0.0	2.2	2	0	0	2	2	2	0	zinc-finger
Peripla_BP_2	PF01497.13	gi|564287862|ref|YP_008874059.1|	-	3.4e-08	32.9	0.2	1.9e-07	30.4	0.1	2.1	1	1	0	1	1	1	1	Periplasmic	binding	protein
PNPase	PF03726.9	gi|564287862|ref|YP_008874059.1|	-	0.029	14.6	0.4	0.2	11.9	0.1	2.3	1	1	1	2	2	2	0	Polyribonucleotide	nucleotidyltransferase,	RNA	binding	domain
zf-ribbon_3	PF13248.1	gi|564287863|ref|YP_008874061.1|	-	0.00049	19.2	6.7	0.018	14.2	0.6	3.3	3	0	0	3	3	3	1	zinc-ribbon	domain
HypA	PF01155.14	gi|564287863|ref|YP_008874061.1|	-	0.0025	17.4	5.0	0.14	11.8	0.2	2.3	2	0	0	2	2	2	2	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|564287863|ref|YP_008874061.1|	-	0.0081	15.9	12.4	0.0095	15.7	1.2	2.8	2	1	0	2	2	2	1	Double	zinc	ribbon
DUF4596	PF15363.1	gi|564287863|ref|YP_008874061.1|	-	0.017	15.0	0.3	0.056	13.3	0.2	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4596)
RNA_POL_M_15KD	PF02150.11	gi|564287863|ref|YP_008874061.1|	-	0.11	12.1	4.1	18	5.1	0.4	3.5	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
zf-C3HC4_3	PF13920.1	gi|564287863|ref|YP_008874061.1|	-	0.3	10.7	7.4	0.063	12.9	1.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Baculo_LEF5_C	PF11792.3	gi|564287863|ref|YP_008874061.1|	-	0.38	10.1	0.0	0.38	10.1	0.0	2.9	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zinc_ribbon_2	PF13240.1	gi|564287863|ref|YP_008874061.1|	-	1.4	8.4	15.5	0.17	11.3	1.3	3.5	3	0	0	3	3	3	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|564287863|ref|YP_008874061.1|	-	2.2	8.1	14.0	0.33	10.7	2.0	3.4	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
2TM	PF13239.1	gi|564287936|ref|YP_008874062.1|	-	0.0011	19.0	1.7	0.0011	19.0	1.2	1.7	1	1	1	2	2	2	1	2TM	domain
AA_permease_2	PF13520.1	gi|564287936|ref|YP_008874062.1|	-	0.014	13.9	0.4	0.016	13.8	0.3	1.0	1	0	0	1	1	1	0	Amino	acid	permease
OmpH	PF03938.9	gi|564287864|ref|YP_008874063.1|	-	0.045	13.6	0.0	0.05	13.5	0.0	1.0	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Soyouz_module	PF14313.1	gi|564287864|ref|YP_008874063.1|	-	0.23	11.0	2.0	0.26	10.8	0.5	1.8	2	0	0	2	2	2	0	N-terminal	region	of	Paramyxovirinae	phosphoprotein	(P)
TraF_2	PF13729.1	gi|564287864|ref|YP_008874063.1|	-	3.3	6.4	6.0	1.5	7.6	0.1	1.9	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
Pup	PF05639.6	gi|564287864|ref|YP_008874063.1|	-	9.8	6.7	12.5	29	5.2	8.7	1.8	1	1	0	1	1	1	0	Pup-like	protein
Crystall_2	PF09076.5	gi|564287866|ref|YP_008874065.1|	-	0.032	13.9	0.0	0.048	13.4	0.0	1.2	1	0	0	1	1	1	0	Beta/Gamma	crystallin
TOBE_2	PF08402.5	gi|564287866|ref|YP_008874065.1|	-	0.25	11.3	0.9	1.7	8.7	0.5	1.9	1	1	1	2	2	2	0	TOBE	domain
GCOM2	PF15328.1	gi|564287867|ref|YP_008874066.1|	-	0.0035	17.1	3.2	0.0035	17.1	1.5	1.4	1	1	0	1	1	1	1	Putative	GRINL1B	complex	locus	protein	2
Tropomyosin	PF00261.15	gi|564287867|ref|YP_008874066.1|	-	0.011	14.7	6.1	0.02	14.0	4.2	1.3	1	0	0	1	1	1	0	Tropomyosin
DUF1829	PF08862.5	gi|564287867|ref|YP_008874066.1|	-	0.031	14.5	0.8	0.089	13.0	0.2	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF1829
DUF1664	PF07889.7	gi|564287867|ref|YP_008874066.1|	-	0.15	11.9	2.3	0.41	10.4	1.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Synaptobrevin	PF00957.16	gi|564287867|ref|YP_008874066.1|	-	0.16	11.5	1.0	0.38	10.4	0.7	1.6	1	0	0	1	1	1	0	Synaptobrevin
TPR_16	PF13432.1	gi|564287868|ref|YP_008874067.1|	-	0.06	14.0	0.1	17	6.2	0.1	2.2	1	1	1	2	2	2	0	Tetratricopeptide	repeat
Lipase_GDSL_2	PF13472.1	gi|564287870|ref|YP_008874069.1|	-	0.039	14.0	0.2	0.042	13.9	0.2	1.1	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
UvrD_C_2	PF13538.1	gi|564287938|ref|YP_008874071.1|	-	7.9e-09	35.5	0.1	1.8e-08	34.4	0.0	1.6	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
NERD	PF08378.6	gi|564287938|ref|YP_008874071.1|	-	1e-06	29.0	0.0	1.8e-06	28.1	0.0	1.4	1	0	0	1	1	1	1	Nuclease-related	domain
UvrD_C	PF13361.1	gi|564287938|ref|YP_008874071.1|	-	0.00013	21.5	0.0	0.12	11.7	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
DUF2075	PF09848.4	gi|564287938|ref|YP_008874071.1|	-	0.0072	15.3	0.0	0.017	14.0	0.0	1.5	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
UvrD-helicase	PF00580.16	gi|564287938|ref|YP_008874071.1|	-	0.016	14.5	0.0	3.8	6.7	0.0	2.4	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
HSDR_N	PF04313.9	gi|564287938|ref|YP_008874071.1|	-	0.14	11.8	0.1	1.2	8.7	0.0	2.1	2	0	0	2	2	2	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
Arc_trans_TRASH	PF08394.5	gi|564287939|ref|YP_008874072.1|	-	0.058	13.5	0.6	0.093	12.9	0.4	1.3	1	0	0	1	1	1	0	Archaeal	TRASH	domain
DDE_Tnp_IS1595	PF12762.2	gi|564287871|ref|YP_008874073.1|	-	1.4e-22	80.1	0.0	1.8e-22	79.7	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.2	gi|564287871|ref|YP_008874073.1|	-	1.2e-09	37.8	0.9	2.6e-09	36.7	0.6	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.4	gi|564287871|ref|YP_008874073.1|	-	4.8e-07	29.5	0.0	7e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.8	gi|564287871|ref|YP_008874073.1|	-	0.00021	20.6	5.0	0.00045	19.6	2.7	2.0	2	0	0	2	2	2	1	InsA	N-terminal	domain
ADK_lid	PF05191.9	gi|564287871|ref|YP_008874073.1|	-	0.014	15.0	0.1	0.014	15.0	0.1	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
HTH_23	PF13384.1	gi|564287871|ref|YP_008874073.1|	-	0.016	14.8	0.0	0.059	13.0	0.0	2.0	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_30	PF13556.1	gi|564287871|ref|YP_008874073.1|	-	0.022	14.3	0.1	0.056	13.0	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
Zn-ribbon_8	PF09723.5	gi|564287871|ref|YP_008874073.1|	-	0.029	14.3	1.6	6.8	6.7	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
Sigma70_r4_2	PF08281.7	gi|564287871|ref|YP_008874073.1|	-	0.043	13.2	0.0	0.68	9.4	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
Prok-RING_1	PF14446.1	gi|564287871|ref|YP_008874073.1|	-	0.044	13.5	0.3	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zinc-ribbons_6	PF07191.7	gi|564287871|ref|YP_008874073.1|	-	0.051	13.3	0.1	0.11	12.3	0.1	1.5	1	0	0	1	1	1	0	zinc-ribbons
zf-C4_Topoisom	PF01396.14	gi|564287871|ref|YP_008874073.1|	-	0.094	12.2	1.0	0.19	11.2	0.7	1.5	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
HNH_5	PF14279.1	gi|564287871|ref|YP_008874073.1|	-	0.1	12.6	0.1	0.21	11.6	0.0	1.6	1	0	0	1	1	1	0	HNH	endonuclease
zf-C2HC_2	PF13913.1	gi|564287871|ref|YP_008874073.1|	-	0.11	12.1	0.6	0.11	12.1	0.4	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-Dof	PF02701.10	gi|564287871|ref|YP_008874073.1|	-	0.17	11.8	3.9	0.33	10.8	2.7	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
Zn_ribbon_recom	PF13408.1	gi|564287871|ref|YP_008874073.1|	-	0.21	11.8	2.0	0.55	10.5	1.4	1.7	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-ISL3	PF14690.1	gi|564287871|ref|YP_008874073.1|	-	0.38	10.8	5.1	10	6.2	0.1	3.0	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2H2_6	PF13912.1	gi|564287871|ref|YP_008874073.1|	-	0.74	9.8	4.2	0.44	10.5	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
HSP70	PF00012.15	gi|564287872|ref|YP_008874075.1|	-	7.9e-121	403.8	0.9	1.5e-90	303.8	0.0	3.0	1	1	2	3	3	3	3	Hsp70	protein
MreB_Mbl	PF06723.8	gi|564287872|ref|YP_008874075.1|	-	1.1e-13	50.5	0.0	4.1e-12	45.3	0.0	2.6	2	1	0	2	2	2	1	MreB/Mbl	protein
StbA	PF06406.6	gi|564287872|ref|YP_008874075.1|	-	0.15	10.9	0.0	0.34	9.8	0.0	1.5	1	0	0	1	1	1	0	StbA	protein
Sdh_cyt	PF01127.17	gi|564287941|ref|YP_008874076.1|	-	0.63	9.8	8.6	0.15	11.9	3.2	2.0	1	1	1	2	2	2	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
DUF4249	PF14054.1	gi|564287877|ref|YP_008874083.1|	-	0.056	12.7	0.1	0.072	12.4	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4249)
NTP_transf_2	PF01909.18	gi|564287878|ref|YP_008874084.1|	-	8.2e-12	45.2	0.1	1.5e-11	44.4	0.0	1.5	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
MarR_2	PF12802.2	gi|564287878|ref|YP_008874084.1|	-	8.6e-05	22.1	0.1	0.00027	20.5	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|564287878|ref|YP_008874084.1|	-	0.0011	18.3	0.0	0.01	15.1	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|564287878|ref|YP_008874084.1|	-	0.023	14.2	0.0	0.043	13.4	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|564287878|ref|YP_008874084.1|	-	0.12	12.2	0.2	0.27	11.0	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|564287878|ref|YP_008874084.1|	-	0.14	12.5	0.1	0.43	10.9	0.0	1.8	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
tRNA_anti-codon	PF01336.20	gi|564287879|ref|YP_008874085.1|	-	0.0087	15.9	0.0	0.016	15.0	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DUF796	PF05638.7	gi|564287879|ref|YP_008874085.1|	-	0.04	13.9	0.0	0.091	12.7	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF796)
EDR1	PF14381.1	gi|564287879|ref|YP_008874085.1|	-	0.086	12.3	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Ethylene-responsive	protein	kinase	Le-CTR1
Retrotrans_gag	PF03732.12	gi|564287880|ref|YP_008874086.1|	-	0.22	11.5	2.4	0.36	10.9	0.2	2.3	2	1	1	3	3	3	0	Retrotransposon	gag	protein
ADK_lid	PF05191.9	gi|564287944|ref|YP_008874087.1|	-	0.00027	20.5	0.7	0.039	13.6	0.0	2.1	2	0	0	2	2	2	2	Adenylate	kinase,	active	site	lid
DUF3039	PF11238.3	gi|564287944|ref|YP_008874087.1|	-	0.0012	18.1	0.5	0.33	10.4	0.0	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3039)
Terminase_GpA	PF05876.7	gi|564287944|ref|YP_008874087.1|	-	0.0032	15.9	1.0	0.0035	15.7	0.7	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zf-C2H2	PF00096.21	gi|564287944|ref|YP_008874087.1|	-	0.0042	17.3	2.2	0.37	11.2	0.1	2.2	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
zinc_ribbon_5	PF13719.1	gi|564287944|ref|YP_008874087.1|	-	0.0056	16.2	1.2	0.031	13.8	0.1	2.0	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|564287944|ref|YP_008874087.1|	-	0.0073	15.9	0.8	0.044	13.4	0.0	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-3CxxC	PF13695.1	gi|564287944|ref|YP_008874087.1|	-	0.054	13.7	0.1	0.058	13.6	0.0	1.1	1	0	0	1	1	1	0	Zinc-binding	domain
FYVE	PF01363.16	gi|564287944|ref|YP_008874087.1|	-	0.068	13.0	2.3	0.25	11.2	1.6	1.7	1	1	0	1	1	1	0	FYVE	zinc	finger
zinc-ribbons_6	PF07191.7	gi|564287944|ref|YP_008874087.1|	-	0.095	12.5	3.1	0.38	10.5	2.1	1.8	1	1	0	1	1	1	0	zinc-ribbons
zf-C2H2_4	PF13894.1	gi|564287944|ref|YP_008874087.1|	-	0.1	12.9	1.8	0.42	11.0	0.3	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-HYPF	PF07503.7	gi|564287944|ref|YP_008874087.1|	-	0.13	11.6	4.9	1.2	8.5	0.4	2.3	2	0	0	2	2	2	0	HypF	finger
Zn-ribbon_8	PF09723.5	gi|564287944|ref|YP_008874087.1|	-	0.16	11.9	3.5	6.3	6.8	0.3	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|564287944|ref|YP_008874087.1|	-	0.23	11.0	2.3	0.45	10.0	0.1	2.1	2	0	0	2	2	2	0	InsA	N-terminal	domain
DZR	PF12773.2	gi|564287944|ref|YP_008874087.1|	-	0.29	10.9	2.6	0.97	9.3	1.8	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|564287944|ref|YP_008874087.1|	-	0.29	10.4	4.9	3.2	7.1	3.4	2.0	1	1	0	1	1	1	0	TFIIB	zinc-binding
TrwB_AAD_bind	PF10412.4	gi|564287882|ref|YP_008874089.1|	-	4.1e-33	114.5	0.0	6e-33	114.0	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_10	PF12846.2	gi|564287882|ref|YP_008874089.1|	-	1.8e-15	57.1	0.0	3.3e-15	56.3	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
TraG-D_C	PF12696.2	gi|564287882|ref|YP_008874089.1|	-	3.9e-13	49.3	1.2	6.5e-13	48.6	0.0	1.9	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.1	gi|564287882|ref|YP_008874089.1|	-	4.2e-05	23.6	0.0	0.0013	18.8	0.0	2.5	1	1	1	2	2	2	1	AAA	domain
ABC_tran	PF00005.22	gi|564287882|ref|YP_008874089.1|	-	0.001	19.3	0.0	0.0026	18.0	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
T4SS-DNA_transf	PF02534.9	gi|564287882|ref|YP_008874089.1|	-	0.0029	16.2	0.0	0.0047	15.5	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
DUF87	PF01935.12	gi|564287882|ref|YP_008874089.1|	-	0.018	14.8	0.0	0.039	13.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
KaiC	PF06745.8	gi|564287882|ref|YP_008874089.1|	-	0.018	14.1	0.0	0.073	12.1	0.0	1.8	2	0	0	2	2	2	0	KaiC
AAA_16	PF13191.1	gi|564287882|ref|YP_008874089.1|	-	0.027	14.4	0.1	0.41	10.6	0.0	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|564287882|ref|YP_008874089.1|	-	0.03	15.1	0.0	0.065	14.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|564287882|ref|YP_008874089.1|	-	0.043	12.9	0.0	0.073	12.1	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
DEAD	PF00270.24	gi|564287882|ref|YP_008874089.1|	-	0.055	12.9	0.2	0.43	10.0	0.0	2.3	2	2	1	4	4	4	0	DEAD/DEAH	box	helicase
AAA_29	PF13555.1	gi|564287882|ref|YP_008874089.1|	-	0.081	12.4	0.0	0.18	11.3	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SE	PF00437.15	gi|564287882|ref|YP_008874089.1|	-	0.13	11.1	0.0	0.22	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA	PF00004.24	gi|564287882|ref|YP_008874089.1|	-	0.19	11.9	0.0	4.1	7.6	0.0	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Relaxase	PF03432.9	gi|564287883|ref|YP_008874090.1|	-	0.023	14.0	0.3	0.047	13.0	0.2	1.8	1	1	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
RHH_1	PF01402.16	gi|564287884|ref|YP_008874091.1|	-	0.0065	16.3	0.5	0.017	15.0	0.0	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
WWE	PF02825.15	gi|564287884|ref|YP_008874091.1|	-	0.049	13.0	0.2	5.5	6.4	0.1	2.3	2	0	0	2	2	2	0	WWE	domain
HD_3	PF13023.1	gi|564287884|ref|YP_008874091.1|	-	0.1	12.3	0.8	0.12	12.0	0.6	1.3	1	0	0	1	1	1	0	HD	domain
DUF1778	PF08681.6	gi|564287885|ref|YP_008874092.1|	-	0.0045	16.7	0.5	0.0045	16.7	0.4	1.8	2	1	1	3	3	3	1	Protein	of	unknown	function	(DUF1778)
RHH_1	PF01402.16	gi|564287885|ref|YP_008874092.1|	-	0.0051	16.6	0.2	0.0051	16.6	0.1	1.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
YtxH	PF12732.2	gi|564287885|ref|YP_008874092.1|	-	0.13	12.6	1.5	0.42	11.0	1.1	1.8	1	1	0	1	1	1	0	YtxH-like	protein
Phe_tRNA-synt_N	PF02912.13	gi|564287885|ref|YP_008874092.1|	-	1	9.1	4.0	0.4	10.4	0.9	1.7	2	0	0	2	2	2	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
ATP-synt_B	PF00430.13	gi|564287885|ref|YP_008874092.1|	-	1.1	9.1	5.8	0.17	11.6	0.7	1.9	2	0	0	2	2	2	0	ATP	synthase	B/B'	CF(0)
AAA_10	PF12846.2	gi|564287886|ref|YP_008874093.1|	-	2.7e-38	132.1	0.6	9.4e-37	127.0	0.0	3.1	4	0	0	4	4	4	1	AAA-like	domain
AAA_22	PF13401.1	gi|564287886|ref|YP_008874093.1|	-	9.4e-05	22.5	0.2	0.019	15.1	0.1	2.7	2	0	0	2	2	2	1	AAA	domain
Zot	PF05707.7	gi|564287886|ref|YP_008874093.1|	-	0.00018	21.0	0.2	0.0043	16.5	0.0	2.3	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
CagE_TrbE_VirB	PF03135.9	gi|564287886|ref|YP_008874093.1|	-	0.00086	19.1	0.0	0.0023	17.7	0.0	1.6	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
DEAD	PF00270.24	gi|564287886|ref|YP_008874093.1|	-	0.015	14.8	1.8	0.081	12.4	1.2	2.1	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
ArgK	PF03308.11	gi|564287886|ref|YP_008874093.1|	-	0.06	12.1	0.0	0.12	11.1	0.0	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_16	PF13191.1	gi|564287892|ref|YP_008874099.1|	-	1.4e-14	54.5	0.3	5.9e-14	52.4	0.0	2.1	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|564287892|ref|YP_008874099.1|	-	1.4e-12	47.9	0.0	2.9e-12	46.9	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.6	gi|564287892|ref|YP_008874099.1|	-	6.8e-09	35.3	0.0	1.9e-08	33.8	0.0	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|564287892|ref|YP_008874099.1|	-	6.9e-08	32.6	0.0	1.5e-07	31.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|564287892|ref|YP_008874099.1|	-	2.3e-06	26.7	0.0	5.2e-06	25.5	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Arch_ATPase	PF01637.13	gi|564287892|ref|YP_008874099.1|	-	4.9e-06	26.4	0.0	1.5e-05	24.8	0.0	1.7	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_25	PF13481.1	gi|564287892|ref|YP_008874099.1|	-	8.5e-05	22.0	0.0	0.00092	18.6	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|564287892|ref|YP_008874099.1|	-	0.0014	18.3	0.0	0.0041	16.7	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
Sigma54_activat	PF00158.21	gi|564287892|ref|YP_008874099.1|	-	0.0033	16.9	0.0	0.0059	16.1	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_17	PF13207.1	gi|564287892|ref|YP_008874099.1|	-	0.0076	17.0	3.2	0.62	10.8	2.2	3.0	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|564287892|ref|YP_008874099.1|	-	0.0078	16.3	0.0	0.021	14.9	0.0	1.8	1	0	0	1	1	1	1	RNA	helicase
AAA_29	PF13555.1	gi|564287892|ref|YP_008874099.1|	-	0.0099	15.3	0.0	0.02	14.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|564287892|ref|YP_008874099.1|	-	0.017	15.0	0.5	0.58	10.0	0.0	3.2	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|564287892|ref|YP_008874099.1|	-	0.018	14.4	0.1	0.1	12.0	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|564287892|ref|YP_008874099.1|	-	0.019	14.4	0.6	0.064	12.6	0.0	2.0	2	1	0	2	2	2	0	AAA-like	domain
ABC_tran	PF00005.22	gi|564287892|ref|YP_008874099.1|	-	0.029	14.6	0.2	0.076	13.3	0.1	2.0	1	1	0	1	1	1	0	ABC	transporter
AAA_23	PF13476.1	gi|564287892|ref|YP_008874099.1|	-	0.041	14.2	0.8	0.12	12.6	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|564287892|ref|YP_008874099.1|	-	0.057	12.6	0.0	0.1	11.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_PrkA	PF08298.6	gi|564287892|ref|YP_008874099.1|	-	0.057	12.0	0.0	0.1	11.2	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_24	PF13479.1	gi|564287892|ref|YP_008874099.1|	-	0.057	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|564287892|ref|YP_008874099.1|	-	0.057	13.1	0.0	0.14	11.8	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_14	PF13173.1	gi|564287892|ref|YP_008874099.1|	-	0.065	13.1	0.0	0.31	10.9	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|564287892|ref|YP_008874099.1|	-	0.071	12.2	0.0	0.12	11.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.18	gi|564287892|ref|YP_008874099.1|	-	0.084	12.8	0.2	0.38	10.7	0.0	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.9	gi|564287892|ref|YP_008874099.1|	-	0.092	12.4	0.1	0.37	10.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
FtsK_SpoIIIE	PF01580.13	gi|564287892|ref|YP_008874099.1|	-	0.093	12.1	0.0	0.24	10.8	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
HDC	PF02329.11	gi|564287945|ref|YP_008874100.1|	-	0.12	10.9	0.0	0.14	10.7	0.0	1.0	1	0	0	1	1	1	0	Histidine	carboxylase	PI	chain
NTP_transf_2	PF01909.18	gi|564287893|ref|YP_008874102.1|	-	5e-09	36.3	0.9	1.6e-08	34.7	0.2	2.0	2	0	0	2	2	2	1	Nucleotidyltransferase	domain
MarR_2	PF12802.2	gi|564287893|ref|YP_008874102.1|	-	2.6e-06	26.9	0.0	5.4e-06	25.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|564287893|ref|YP_008874102.1|	-	0.00086	18.9	0.1	0.0027	17.3	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
GntR	PF00392.16	gi|564287893|ref|YP_008874102.1|	-	0.0012	18.2	0.0	0.0031	16.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.1	gi|564287893|ref|YP_008874102.1|	-	0.046	13.1	0.0	0.088	12.2	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Adenyl_cycl_N	PF12633.2	gi|564287893|ref|YP_008874102.1|	-	0.12	11.8	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
DUF1030	PF06270.6	gi|564287894|ref|YP_008874103.1|	-	0.09	12.3	0.1	0.22	11.0	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1030)
HEPN	PF05168.9	gi|564287894|ref|YP_008874103.1|	-	0.12	12.2	0.1	0.22	11.4	0.1	1.6	1	1	0	1	1	1	0	HEPN	domain
Phage_int_SAM_1	PF02899.12	gi|564287895|ref|YP_008874104.1|	-	0.00032	20.7	4.0	0.0013	18.8	0.1	3.3	4	0	0	4	4	4	1	Phage	integrase,	N-terminal	SAM-like	domain
Cas_Cas6	PF01881.11	gi|564287896|ref|YP_008874105.1|	-	4.1e-08	33.6	0.0	1.1e-07	32.2	0.0	1.7	1	1	0	1	1	1	1	CRISPR	associated	protein	Cas6
Cas_TM1802	PF09484.5	gi|564287897|ref|YP_008874106.1|	-	2.6e-11	42.7	0.0	1.8e-05	23.4	0.0	2.5	3	0	0	3	3	3	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
DUF694	PF05107.7	gi|564287898|ref|YP_008874107.1|	-	1.4e-62	211.3	0.0	1.6e-62	211.2	0.0	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF694)
Cas_Cas5d	PF09704.5	gi|564287899|ref|YP_008874108.1|	-	2.9e-08	33.6	0.0	3.1e-08	33.4	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DEAD	PF00270.24	gi|564287900|ref|YP_008874109.1|	-	2.7e-06	26.9	0.0	6.8e-06	25.6	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|564287900|ref|YP_008874109.1|	-	0.0015	18.4	0.0	0.0038	17.0	0.0	1.7	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Rep_fac-A_C	PF08646.5	gi|564287900|ref|YP_008874109.1|	-	0.0038	16.9	0.0	0.0079	15.9	0.0	1.4	1	0	0	1	1	1	1	Replication	factor-A	C	terminal	domain
Cas_Cas4	PF01930.12	gi|564287901|ref|YP_008874110.1|	-	1.4e-45	155.0	0.0	1.6e-45	154.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|564287901|ref|YP_008874110.1|	-	2.1e-05	24.0	0.1	2.3e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas1	PF01867.11	gi|564287902|ref|YP_008874111.1|	-	3.4e-82	275.7	0.0	4e-82	275.4	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.4	gi|564287903|ref|YP_008874112.1|	-	4.1e-14	52.4	0.0	4.6e-14	52.3	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
PCNA_N	PF00705.13	gi|564287905|ref|YP_008874115.1|	-	0.013	14.9	0.0	0.03	13.8	0.0	1.6	2	0	0	2	2	2	0	Proliferating	cell	nuclear	antigen,	N-terminal	domain
SprT-like	PF10263.4	gi|564287907|ref|YP_008874118.1|	-	0.0051	16.4	0.7	0.24	11.0	0.0	2.2	2	0	0	2	2	2	2	SprT-like	family
DUF955	PF06114.8	gi|564287907|ref|YP_008874118.1|	-	0.012	15.2	0.2	0.023	14.4	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF955)
Peptidase_MA_2	PF13485.1	gi|564287907|ref|YP_008874118.1|	-	0.081	12.9	0.1	0.2	11.7	0.0	1.7	1	0	0	1	1	1	0	Peptidase	MA	superfamily
IncA	PF04156.9	gi|564287907|ref|YP_008874118.1|	-	0.47	10.0	3.1	0.92	9.0	2.2	1.4	1	0	0	1	1	1	0	IncA	protein
DZR	PF12773.2	gi|564287949|ref|YP_008874120.1|	-	0.041	13.6	0.3	0.073	12.9	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
HNH	PF01844.18	gi|564287949|ref|YP_008874120.1|	-	0.051	13.4	0.1	0.082	12.7	0.0	1.4	1	0	0	1	1	1	0	HNH	endonuclease
zf-FCS	PF06467.9	gi|564287949|ref|YP_008874120.1|	-	0.067	12.8	0.2	2.5	7.7	0.0	2.3	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2703	PF10865.3	gi|564287950|ref|YP_008874121.1|	-	0.18	11.7	0.9	0.18	11.7	0.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2703)
Mur_ligase_M	PF08245.7	gi|564287909|ref|YP_008874123.1|	-	4e-07	30.2	0.0	6.7e-07	29.5	0.0	1.3	1	0	0	1	1	1	1	Mur	ligase	middle	domain
HTH_IclR	PF09339.5	gi|564287909|ref|YP_008874123.1|	-	0.12	12.0	0.3	0.67	9.5	0.0	2.4	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
Caps_synth_CapC	PF14102.1	gi|564287910|ref|YP_008874124.1|	-	2.3e-13	50.3	33.1	1.5e-09	37.9	8.9	3.1	3	1	1	4	4	4	2	Capsule	biosynthesis	CapC
DUF2065	PF09838.4	gi|564287918|ref|YP_008874136.1|	-	0.0026	17.4	0.0	1.6	8.4	0.1	2.1	2	0	0	2	2	2	2	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
SLAC1	PF03595.12	gi|564287919|ref|YP_008874137.1|	-	0.044	12.4	5.8	0.063	11.9	4.0	1.2	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
zf-DHHC	PF01529.15	gi|564287919|ref|YP_008874137.1|	-	0.079	12.3	1.6	0.092	12.1	1.1	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
DUF4227	PF14004.1	gi|564287919|ref|YP_008874137.1|	-	0.11	12.3	0.3	0.19	11.5	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4227)
FixP_N	PF14715.1	gi|564287919|ref|YP_008874137.1|	-	0.36	10.2	6.1	0.12	11.7	1.0	2.2	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
Oxidored_q3	PF00499.15	gi|564287919|ref|YP_008874137.1|	-	0.76	9.5	6.2	1	9.1	4.3	1.1	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF3784	PF12650.2	gi|564287919|ref|YP_008874137.1|	-	3	7.8	6.3	7.3	6.6	3.9	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3784)
DUF1232	PF06803.7	gi|564287919|ref|YP_008874137.1|	-	3.5	7.1	6.5	5.4	6.5	1.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1232)
DUF3366	PF11846.3	gi|564287920|ref|YP_008874138.1|	-	0.18	11.6	1.4	0.28	11.0	1.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3366)
RhodobacterPufX	PF11511.3	gi|564287920|ref|YP_008874138.1|	-	1.1	8.6	3.8	1.5	8.2	0.1	2.3	1	1	1	2	2	2	0	Intrinsic	membrane	protein	PufX
Methyltransf_13	PF08421.6	gi|564287921|ref|YP_008874139.1|	-	0.0014	18.0	0.1	0.0017	17.7	0.1	1.2	1	0	0	1	1	1	1	Putative	zinc	binding	domain
DUF1610	PF07754.6	gi|564287921|ref|YP_008874139.1|	-	0.14	12.2	0.4	0.33	11.0	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
SWIM	PF04434.12	gi|564287922|ref|YP_008874140.1|	-	0.0075	15.7	0.1	0.0075	15.7	0.1	2.5	2	1	0	2	2	2	1	SWIM	zinc	finger
TFIIB	PF00382.14	gi|564287923|ref|YP_008874141.1|	-	5e-21	74.2	2.6	1.6e-11	43.8	1.0	2.5	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|564287923|ref|YP_008874141.1|	-	4.6e-08	32.2	2.5	4.6e-08	32.2	1.8	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|564287923|ref|YP_008874141.1|	-	0.0005	19.6	0.6	0.0013	18.3	0.4	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.14	gi|564287923|ref|YP_008874141.1|	-	0.0096	15.8	0.2	0.45	10.4	0.2	2.4	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
zinc-ribbons_6	PF07191.7	gi|564287923|ref|YP_008874141.1|	-	0.032	14.0	2.0	0.041	13.6	0.4	1.8	2	0	0	2	2	2	0	zinc-ribbons
DZR	PF12773.2	gi|564287923|ref|YP_008874141.1|	-	0.058	13.2	0.8	0.12	12.2	0.5	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|564287923|ref|YP_008874141.1|	-	0.44	9.8	3.4	0.97	8.7	2.3	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|564287926|ref|YP_008874145.1|	-	0.012	15.5	1.6	0.97	9.4	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|564287926|ref|YP_008874145.1|	-	0.017	14.7	2.4	0.031	13.8	1.7	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|564287926|ref|YP_008874145.1|	-	0.017	15.3	1.3	0.021	15.1	0.9	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Ima1_N	PF09779.4	gi|564287926|ref|YP_008874145.1|	-	0.022	15.2	0.1	0.022	15.2	0.1	1.1	1	0	0	1	1	1	0	Ima1	N-terminal	domain
zf-ribbon_3	PF13248.1	gi|564287926|ref|YP_008874145.1|	-	0.039	13.1	1.4	0.3	10.3	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|564287926|ref|YP_008874145.1|	-	0.039	13.6	2.5	0.073	12.7	1.7	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|564287926|ref|YP_008874145.1|	-	0.11	12.2	1.0	4.1	7.2	0.2	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF2296	PF10058.4	gi|564287926|ref|YP_008874145.1|	-	0.13	11.9	0.5	0.24	11.1	0.3	1.5	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-RING_3	PF14369.1	gi|564287926|ref|YP_008874145.1|	-	0.14	12.2	4.9	0.37	10.8	0.6	2.1	1	1	1	2	2	2	0	zinc-finger
zf-HYPF	PF07503.7	gi|564287926|ref|YP_008874145.1|	-	0.21	11.0	3.3	1.1	8.7	0.3	2.2	2	0	0	2	2	2	0	HypF	finger
Trm112p	PF03966.11	gi|564287926|ref|YP_008874145.1|	-	0.23	11.8	1.8	2.4	8.5	0.1	2.1	1	1	1	2	2	2	0	Trm112p-like	protein
DZR	PF12773.2	gi|564287926|ref|YP_008874145.1|	-	0.23	11.2	2.6	0.57	10.0	1.8	1.6	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|564287926|ref|YP_008874145.1|	-	0.28	10.7	2.0	3.6	7.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|564287926|ref|YP_008874145.1|	-	0.52	10.2	5.6	3.4	7.7	0.5	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1595	PF12760.2	gi|564287926|ref|YP_008874145.1|	-	0.72	9.7	3.6	1.5	8.6	2.5	1.6	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-C2H2_6	PF13912.1	gi|564287926|ref|YP_008874145.1|	-	0.79	9.7	3.3	1.1	9.2	0.2	2.2	2	1	0	2	2	2	0	C2H2-type	zinc	finger
RRN7	PF11781.3	gi|564287926|ref|YP_008874145.1|	-	2	7.9	5.2	5.1	6.6	0.8	2.1	1	1	1	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
N6_Mtase	PF02384.11	gi|564287927|ref|YP_008874146.1|	-	9.8e-13	47.8	0.0	1.4e-12	47.3	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_26	PF13659.1	gi|564287927|ref|YP_008874146.1|	-	5.5e-08	32.8	0.0	1.1e-07	31.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|564287927|ref|YP_008874146.1|	-	0.00078	19.9	0.0	0.0016	18.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|564287927|ref|YP_008874146.1|	-	0.0086	15.6	0.0	0.015	14.8	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.1	gi|564287927|ref|YP_008874146.1|	-	0.064	12.8	0.0	0.098	12.2	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
TACC	PF05010.9	gi|564287928|ref|YP_008874147.1|	-	0.019	14.7	0.0	0.021	14.5	0.0	1.1	1	0	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC)
PadR	PF03551.9	gi|564287929|ref|YP_008874148.1|	-	3.8e-17	61.8	0.3	4.6e-17	61.5	0.2	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|564287929|ref|YP_008874148.1|	-	0.00014	22.1	0.0	0.00017	21.8	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|564287929|ref|YP_008874148.1|	-	0.0023	17.7	0.1	0.0028	17.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.6	gi|564287929|ref|YP_008874148.1|	-	0.0028	17.2	0.0	0.0036	16.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_34	PF13601.1	gi|564287929|ref|YP_008874148.1|	-	0.02	14.8	0.0	0.026	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|564287929|ref|YP_008874148.1|	-	0.022	14.4	0.1	0.033	13.8	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|564287929|ref|YP_008874148.1|	-	0.051	13.2	0.6	0.67	9.6	0.2	2.5	2	1	0	2	2	2	0	MarR	family
DUF4364	PF14277.1	gi|564287929|ref|YP_008874148.1|	-	0.054	13.1	0.0	0.1	12.2	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)