#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|574087254|ref|YP_008997839.1|	-	2.9e-14	52.8	0.1	5.7e-14	51.9	0.1	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|574087254|ref|YP_008997839.1|	-	6.7e-11	42.6	0.0	1.5e-10	41.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|574087254|ref|YP_008997839.1|	-	4.5e-09	36.9	0.7	2.5e-08	34.5	0.1	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|574087254|ref|YP_008997839.1|	-	6.3e-09	36.3	0.0	3.2e-08	34.1	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PaaX	PF07848.12	gi|574087254|ref|YP_008997839.1|	-	0.0025	18.0	0.0	0.0062	16.7	0.0	1.6	1	0	0	1	1	1	1	PaaX-like	protein
NACHT	PF05729.12	gi|574087254|ref|YP_008997839.1|	-	0.0075	16.2	0.0	0.018	15.0	0.0	1.6	2	0	0	2	2	2	1	NACHT	domain
ATPase_2	PF01637.18	gi|574087254|ref|YP_008997839.1|	-	0.021	14.7	0.0	0.077	12.9	0.0	1.9	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|574087254|ref|YP_008997839.1|	-	0.026	13.7	0.0	0.045	12.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Microtub_bd	PF16796.5	gi|574087254|ref|YP_008997839.1|	-	0.067	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Microtubule	binding
Kinesin	PF00225.23	gi|574087254|ref|YP_008997839.1|	-	0.1	11.5	0.0	0.17	10.8	0.0	1.3	1	0	0	1	1	1	0	Kinesin	motor	domain
E1-E2_ATPase	PF00122.20	gi|564287501|ref|YP_008873694.1|	-	1.8e-51	174.2	0.5	3.4e-51	173.3	0.5	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564287501|ref|YP_008873694.1|	-	3.5e-45	154.9	4.7	5.8e-45	154.2	4.7	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564287501|ref|YP_008873694.1|	-	8.9e-06	26.2	1.0	0.00024	21.6	0.0	3.1	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564287501|ref|YP_008873694.1|	-	0.0002	21.7	0.0	0.00078	19.8	0.0	2.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564287501|ref|YP_008873694.1|	-	0.0011	18.8	0.7	0.0041	16.9	0.5	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
GST_C_2	PF13410.6	gi|564287501|ref|YP_008873694.1|	-	0.11	12.6	0.0	0.46	10.5	0.0	2.0	2	0	0	2	2	2	0	Glutathione	S-transferase,	C-terminal	domain
Usp	PF00582.26	gi|564287502|ref|YP_008873695.1|	-	1.3e-28	100.2	0.1	1.5e-28	100.1	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Activator-TraM	PF11657.8	gi|564287502|ref|YP_008873695.1|	-	0.031	14.1	0.1	0.039	13.8	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	activator	TraM
MaAIMP_sms	PF16951.5	gi|564287503|ref|YP_008873696.1|	-	0.12	12.1	0.0	0.14	11.9	0.0	1.1	1	0	0	1	1	1	0	Putative	methionine	and	alanine	importer,	small	subunit
Abhydrolase_1	PF00561.20	gi|564287505|ref|YP_008873699.1|	-	0.0046	16.6	0.5	0.3	10.7	0.0	2.7	3	0	0	3	3	3	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|564287505|ref|YP_008873699.1|	-	4.7	7.7	19.7	3.1e+02	1.8	19.8	2.8	1	1	1	2	2	2	0	Alpha/beta	hydrolase	family
HTH_5	PF01022.20	gi|564287506|ref|YP_008873700.1|	-	3.8e-13	49.1	0.1	1.8e-12	46.9	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|564287506|ref|YP_008873700.1|	-	4.6e-09	36.2	0.0	9.1e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287506|ref|YP_008873700.1|	-	3.7e-05	23.2	0.2	9.4e-05	21.9	0.2	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|564287506|ref|YP_008873700.1|	-	5.4e-05	23.1	0.2	7.2e-05	22.7	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|564287506|ref|YP_008873700.1|	-	0.0031	17.4	0.0	0.012	15.4	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|564287506|ref|YP_008873700.1|	-	0.0075	16.4	0.0	0.013	15.6	0.0	1.4	2	0	0	2	2	2	1	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|564287506|ref|YP_008873700.1|	-	0.029	14.2	0.1	0.074	12.9	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF4364	PF14277.6	gi|564287506|ref|YP_008873700.1|	-	0.031	14.0	0.2	0.037	13.8	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_41	PF14502.6	gi|564287506|ref|YP_008873700.1|	-	0.051	13.3	0.0	0.093	12.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|564287506|ref|YP_008873700.1|	-	0.058	13.7	0.0	0.064	13.6	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HxlR	PF01638.17	gi|564287506|ref|YP_008873700.1|	-	0.1	12.5	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Cyd_oper_YbgE	PF09600.10	gi|564287772|ref|YP_008873701.1|	-	0.00032	21.0	1.2	0.00042	20.6	1.2	1.2	1	0	0	1	1	1	1	Cyd	operon	protein	YbgE	(Cyd_oper_YbgE)
Cdc6_C	PF09079.11	gi|574087256|ref|YP_008997840.1|	-	1.1e-11	44.5	0.2	1.4e-11	44.2	0.2	1.1	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
TrmB	PF01978.19	gi|564287507|ref|YP_008873703.1|	-	9.7e-08	31.8	0.0	2.3e-07	30.6	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564287507|ref|YP_008873703.1|	-	0.006	16.4	0.3	0.023	14.5	0.0	2.1	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Spiralin	PF05215.13	gi|564287507|ref|YP_008873703.1|	-	0.049	13.0	0.0	0.082	12.2	0.0	1.3	1	0	0	1	1	1	0	Spiralin
HTH_DeoR	PF08220.12	gi|564287507|ref|YP_008873703.1|	-	0.061	13.1	0.1	0.14	11.9	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
F-112	PF09645.10	gi|564287507|ref|YP_008873703.1|	-	0.17	12.0	0.0	0.29	11.3	0.0	1.4	1	0	0	1	1	1	0	F-112	protein
UPF0175	PF03683.13	gi|564287508|ref|YP_008873704.1|	-	1.1e-15	57.0	0.4	1.7e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|564287508|ref|YP_008873704.1|	-	0.0058	16.5	0.0	0.018	15.0	0.0	1.9	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParD_antitoxin	PF03693.14	gi|564287508|ref|YP_008873704.1|	-	0.068	13.6	0.1	0.088	13.2	0.1	1.2	1	0	0	1	1	1	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
PAS_8	PF13188.7	gi|564287509|ref|YP_008873705.1|	-	0.043	13.8	0.1	0.1	12.6	0.1	1.7	1	1	0	1	1	1	0	PAS	domain
AAA_31	PF13614.6	gi|564287511|ref|YP_008873707.1|	-	5.7e-20	72.0	0.0	9.3e-20	71.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287511|ref|YP_008873707.1|	-	1.5e-14	54.1	0.0	2.4e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|564287511|ref|YP_008873707.1|	-	4.7e-05	22.8	0.0	0.00076	18.8	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|564287511|ref|YP_008873707.1|	-	8.3e-05	22.2	0.0	0.0011	18.5	0.0	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|564287511|ref|YP_008873707.1|	-	0.00023	20.7	0.0	0.00038	20.0	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|564287511|ref|YP_008873707.1|	-	0.0017	17.6	0.0	0.0024	17.1	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|564287511|ref|YP_008873707.1|	-	0.054	12.9	0.0	0.08	12.4	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SpoIIIAH	PF12685.7	gi|564287512|ref|YP_008873708.1|	-	0.65	9.8	10.6	0.77	9.6	10.6	1.2	1	0	0	1	1	1	0	SpoIIIAH-like	protein
Nop14	PF04147.12	gi|564287512|ref|YP_008873708.1|	-	1.5	6.9	15.1	1.5	6.9	15.1	1.1	1	0	0	1	1	1	0	Nop14-like	family
Apt1	PF10351.9	gi|564287512|ref|YP_008873708.1|	-	1.9	7.2	6.6	2	7.2	6.6	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
Sporozoite_P67	PF05642.11	gi|564287512|ref|YP_008873708.1|	-	4.6	5.2	12.7	5.9	4.8	12.7	1.1	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
CDC45	PF02724.14	gi|564287512|ref|YP_008873708.1|	-	5.5	5.2	10.9	5.9	5.1	10.9	1.1	1	0	0	1	1	1	0	CDC45-like	protein
SDA1	PF05285.12	gi|564287512|ref|YP_008873708.1|	-	6.4	6.1	17.1	7	6.0	17.1	1.1	1	0	0	1	1	1	0	SDA1
GREB1	PF15782.5	gi|564287512|ref|YP_008873708.1|	-	9.4	3.2	5.6	9.5	3.2	5.6	1.0	1	0	0	1	1	1	0	Gene	regulated	by	oestrogen	in	breast	cancer
PI3K_1B_p101	PF10486.9	gi|564287512|ref|YP_008873708.1|	-	9.6	3.8	8.9	10	3.7	8.9	1.1	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	gamma	adapter	protein	p101	subunit
MFS_3	PF05977.13	gi|564287774|ref|YP_008873709.1|	-	0.00023	19.7	0.3	0.00027	19.5	0.3	1.0	1	0	0	1	1	1	1	Transmembrane	secretion	effector
UvrD-helicase	PF00580.21	gi|564287513|ref|YP_008873710.1|	-	2.3e-47	162.0	0.0	4.3e-47	161.2	0.0	1.5	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|564287513|ref|YP_008873710.1|	-	2.1e-33	116.2	0.0	8.3e-21	74.7	0.0	2.3	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|564287513|ref|YP_008873710.1|	-	5.1e-24	85.3	0.0	6.6e-23	81.7	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
UvrD_C_2	PF13538.6	gi|564287513|ref|YP_008873710.1|	-	1.6e-10	40.6	0.0	0.0003	20.6	0.0	2.6	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|564287513|ref|YP_008873710.1|	-	3.1e-09	37.1	0.5	1.2e-07	31.9	0.4	2.7	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.18	gi|564287513|ref|YP_008873710.1|	-	7e-05	22.7	0.3	13	5.4	0.0	4.3	4	0	0	4	4	4	2	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|564287513|ref|YP_008873710.1|	-	0.00014	21.6	0.0	0.0024	17.6	0.0	2.7	4	0	0	4	4	4	1	AAA	domain
AAA_12	PF13087.6	gi|564287513|ref|YP_008873710.1|	-	0.1	12.2	0.0	1.4	8.5	0.0	2.6	2	2	0	2	2	2	0	AAA	domain
Cas_Cas4	PF01930.17	gi|564287513|ref|YP_008873710.1|	-	0.16	12.1	0.0	0.38	10.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF83
SicP-binding	PF09119.10	gi|564287513|ref|YP_008873710.1|	-	0.17	11.9	0.0	0.43	10.6	0.0	1.7	1	0	0	1	1	1	0	SicP	binding
PDDEXK_1	PF12705.7	gi|564287514|ref|YP_008873711.1|	-	6.2e-11	42.7	0.0	2.8e-10	40.6	0.0	2.2	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
CutA1	PF03091.15	gi|564287515|ref|YP_008873712.1|	-	2.2e-28	98.0	0.0	2.4e-28	97.9	0.0	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
DUF4191	PF13829.6	gi|564287516|ref|YP_008873713.1|	-	1.2	8.4	2.9	1.4	8.2	2.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Glyoxalase_6	PF18029.1	gi|564287517|ref|YP_008873715.1|	-	1.1e-21	77.6	0.0	1.2e-21	77.4	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase-like	domain
Crystall_2	PF09076.10	gi|564287519|ref|YP_008873717.1|	-	0.071	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Beta/Gamma	crystallin
TOBE_2	PF08402.10	gi|564287519|ref|YP_008873717.1|	-	0.23	11.7	1.3	3.3	8.0	0.9	2.0	1	1	1	2	2	2	0	TOBE	domain
Tropomyosin	PF00261.20	gi|564287520|ref|YP_008873718.1|	-	0.00068	19.1	7.7	0.0011	18.4	7.7	1.3	1	0	0	1	1	1	1	Tropomyosin
Baculo_PEP_C	PF04513.12	gi|564287520|ref|YP_008873718.1|	-	0.0075	16.3	0.9	0.013	15.5	0.7	1.5	1	1	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Jnk-SapK_ap_N	PF09744.9	gi|564287520|ref|YP_008873718.1|	-	0.0097	16.1	2.2	0.017	15.3	2.2	1.4	1	0	0	1	1	1	1	JNK_SAPK-associated	protein-1
Herpes_UL25	PF01499.16	gi|564287520|ref|YP_008873718.1|	-	0.015	13.9	2.1	0.018	13.6	2.1	1.1	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DASH_Spc19	PF08287.11	gi|564287520|ref|YP_008873718.1|	-	0.016	15.1	3.7	0.029	14.3	3.7	1.4	1	0	0	1	1	1	0	Spc19
MCC-bdg_PDZ	PF10506.9	gi|564287520|ref|YP_008873718.1|	-	0.028	14.5	0.1	0.89	9.6	0.0	2.6	2	1	0	3	3	2	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
ABC_tran_CTD	PF16326.5	gi|564287520|ref|YP_008873718.1|	-	0.031	14.5	9.0	0.43	10.8	2.5	3.2	2	1	1	3	3	3	0	ABC	transporter	C-terminal	domain
Spc7	PF08317.11	gi|564287520|ref|YP_008873718.1|	-	0.045	12.6	5.3	0.067	12.1	5.3	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Synaptobrevin	PF00957.21	gi|564287520|ref|YP_008873718.1|	-	0.11	12.2	1.2	0.22	11.3	1.2	1.5	1	0	0	1	1	1	0	Synaptobrevin
LPP	PF04728.13	gi|564287520|ref|YP_008873718.1|	-	0.13	12.6	0.6	0.13	12.6	0.6	2.9	1	1	1	3	3	3	0	Lipoprotein	leucine-zipper
CSN5_C	PF18323.1	gi|564287520|ref|YP_008873718.1|	-	0.36	11.8	2.3	1.2	10.1	2.2	2.0	1	1	0	1	1	1	0	Cop9	signalosome	subunit	5	C-terminal	domain
DUF1664	PF07889.12	gi|564287520|ref|YP_008873718.1|	-	0.71	9.9	5.7	1.3	9.0	0.3	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF4407	PF14362.6	gi|564287520|ref|YP_008873718.1|	-	0.76	9.1	10.2	1.4	8.2	10.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
BST2	PF16716.5	gi|564287520|ref|YP_008873718.1|	-	0.91	10.1	6.8	3.1	8.5	6.2	2.0	1	1	1	2	2	2	0	Bone	marrow	stromal	antigen	2
Mce4_CUP1	PF11887.8	gi|564287520|ref|YP_008873718.1|	-	1.9	7.9	6.3	3.1	7.2	6.3	1.2	1	0	0	1	1	1	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
XhlA	PF10779.9	gi|564287520|ref|YP_008873718.1|	-	4.3	7.6	7.0	28	5.0	0.6	3.2	2	1	1	3	3	3	0	Haemolysin	XhlA
PadR	PF03551.14	gi|564287523|ref|YP_008873721.1|	-	3.7e-13	49.2	0.1	4.5e-13	49.0	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.6	gi|564287523|ref|YP_008873721.1|	-	0.0053	16.5	0.0	0.0073	16.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.6	gi|564287523|ref|YP_008873721.1|	-	0.007	16.3	0.0	0.012	15.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HxlR	PF01638.17	gi|564287523|ref|YP_008873721.1|	-	0.0095	15.8	0.0	0.014	15.3	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
FUR	PF01475.19	gi|564287523|ref|YP_008873721.1|	-	0.017	15.3	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
RTP	PF02334.16	gi|564287523|ref|YP_008873721.1|	-	0.02	15.5	0.0	0.032	14.9	0.0	1.3	1	1	0	1	1	1	0	Replication	terminator	protein
HTH_34	PF13601.6	gi|564287523|ref|YP_008873721.1|	-	0.1	12.8	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|564287523|ref|YP_008873721.1|	-	0.18	11.6	0.0	0.26	11.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_24	PF13412.6	gi|574087259|ref|YP_008997842.1|	-	1.3e-06	27.8	0.0	2e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|574087259|ref|YP_008997842.1|	-	1.3e-05	25.1	0.0	1.6e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|574087259|ref|YP_008997842.1|	-	2.4e-05	24.1	0.3	3.7e-05	23.5	0.3	1.5	1	1	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|574087259|ref|YP_008997842.1|	-	9.4e-05	22.2	0.0	0.00015	21.6	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|574087259|ref|YP_008997842.1|	-	0.00016	21.5	0.1	0.00026	20.9	0.1	1.4	1	1	0	1	1	1	1	MarR	family
Replic_Relax	PF13814.6	gi|574087259|ref|YP_008997842.1|	-	0.0004	20.5	0.0	0.00044	20.4	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_20	PF12840.7	gi|574087259|ref|YP_008997842.1|	-	0.00064	19.7	0.1	0.00082	19.4	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|574087259|ref|YP_008997842.1|	-	0.0007	19.5	0.1	0.0013	18.6	0.1	1.5	1	1	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.20	gi|574087259|ref|YP_008997842.1|	-	0.00083	19.2	0.0	0.0012	18.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|574087259|ref|YP_008997842.1|	-	0.0011	19.2	0.0	0.0014	19.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_27	PF13463.6	gi|574087259|ref|YP_008997842.1|	-	0.0037	17.7	0.0	0.0046	17.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Mnd1	PF03962.15	gi|574087259|ref|YP_008997842.1|	-	0.0053	17.0	0.0	0.0078	16.5	0.0	1.2	1	0	0	1	1	1	1	Mnd1	HTH	domain
HTH_10	PF04967.12	gi|574087259|ref|YP_008997842.1|	-	0.013	15.3	0.0	0.021	14.6	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
FaeA	PF04703.12	gi|574087259|ref|YP_008997842.1|	-	0.014	15.8	0.1	0.022	15.1	0.0	1.4	2	0	0	2	2	1	0	FaeA-like	protein
DUF4423	PF14394.6	gi|574087259|ref|YP_008997842.1|	-	0.014	15.1	0.0	0.018	14.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF505	PF04458.12	gi|574087259|ref|YP_008997842.1|	-	0.018	13.5	0.0	0.02	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_IclR	PF09339.10	gi|574087259|ref|YP_008997842.1|	-	0.026	14.3	0.1	0.035	13.9	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|574087259|ref|YP_008997842.1|	-	0.028	14.6	0.1	0.036	14.3	0.1	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|574087259|ref|YP_008997842.1|	-	0.032	14.0	0.0	0.043	13.6	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
TrmB	PF01978.19	gi|574087259|ref|YP_008997842.1|	-	0.038	13.9	0.0	0.049	13.5	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|574087259|ref|YP_008997842.1|	-	0.04	13.9	0.1	0.054	13.4	0.1	1.2	1	0	0	1	1	1	0	HTH	domain
HxlR	PF01638.17	gi|574087259|ref|YP_008997842.1|	-	0.044	13.6	0.0	0.051	13.4	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_CodY	PF08222.11	gi|574087259|ref|YP_008997842.1|	-	0.049	13.2	0.0	0.074	12.6	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_45	PF14947.6	gi|574087259|ref|YP_008997842.1|	-	0.053	13.5	0.0	0.065	13.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Sigma70_r4	PF04545.16	gi|574087259|ref|YP_008997842.1|	-	0.071	12.6	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
PadR	PF03551.14	gi|574087259|ref|YP_008997842.1|	-	0.11	12.4	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
LexA_DNA_bind	PF01726.16	gi|574087259|ref|YP_008997842.1|	-	0.12	12.2	0.1	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Crp	PF00325.20	gi|574087259|ref|YP_008997842.1|	-	0.13	11.9	0.2	0.2	11.3	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
Phage_rep_O	PF04492.13	gi|574087259|ref|YP_008997842.1|	-	0.16	12.6	0.0	0.2	12.2	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
MRF_C2	PF13888.6	gi|564287776|ref|YP_008873724.1|	-	0.022	14.7	0.1	0.037	13.9	0.1	1.3	1	0	0	1	1	1	0	Myelin	gene	regulatory	factor	C-terminal	domain	2
DUF4878	PF12870.7	gi|564287777|ref|YP_008873725.1|	-	0.004	17.4	0.1	0.0083	16.4	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4878)
Radical_SAM	PF04055.21	gi|564287526|ref|YP_008873726.1|	-	4.8e-08	33.6	0.1	8.4e-07	29.5	0.1	2.7	1	1	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|564287527|ref|YP_008873727.1|	-	3.1e-10	40.7	0.0	1.9e-09	38.1	0.0	2.3	2	2	1	3	3	3	1	Radical	SAM	superfamily
Transcrip_reg	PF01709.20	gi|564287527|ref|YP_008873727.1|	-	0.14	11.6	0.2	0.29	10.5	0.0	1.5	2	0	0	2	2	2	0	Transcriptional	regulator
META	PF03724.16	gi|564287528|ref|YP_008873728.1|	-	4.1e-05	23.5	1.8	0.056	13.4	0.4	2.8	2	1	0	2	2	2	2	META	domain
HTH_20	PF12840.7	gi|564287529|ref|YP_008873729.1|	-	4.1e-14	52.4	0.1	8.5e-14	51.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287529|ref|YP_008873729.1|	-	4.8e-08	32.8	0.1	2e-07	30.8	0.1	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564287529|ref|YP_008873729.1|	-	1.6e-07	31.1	0.0	2.5e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564287529|ref|YP_008873729.1|	-	1.1e-05	24.9	0.0	2e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|564287529|ref|YP_008873729.1|	-	0.0011	18.9	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Sigma70_r4	PF04545.16	gi|564287529|ref|YP_008873729.1|	-	0.027	14.0	0.0	0.047	13.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
COG5	PF10392.9	gi|564287529|ref|YP_008873729.1|	-	0.028	14.6	0.0	0.076	13.2	0.1	1.6	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
HTH_27	PF13463.6	gi|564287529|ref|YP_008873729.1|	-	0.028	14.9	0.0	0.053	14.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564287529|ref|YP_008873729.1|	-	0.056	13.3	0.0	0.098	12.6	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|564287529|ref|YP_008873729.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_11	PF08279.12	gi|564287529|ref|YP_008873729.1|	-	0.17	11.8	0.1	0.29	11.1	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
Wzy_C_2	PF11846.8	gi|564287531|ref|YP_008873731.1|	-	0.3	11.0	2.5	0.19	11.7	0.9	1.4	2	0	0	2	2	2	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
PHD_like	PF12910.7	gi|564287534|ref|YP_008873734.1|	-	0.011	15.8	0.0	0.014	15.4	0.0	1.1	1	0	0	1	1	1	0	Antitoxin	of	toxin-antitoxin,	RelE	/	RelB,	TA	system
DUF3828	PF12883.7	gi|564287534|ref|YP_008873734.1|	-	0.029	14.7	0.1	0.043	14.2	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3828)
Frankia_peptide	PF14407.6	gi|564287534|ref|YP_008873734.1|	-	0.1	12.6	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
HicA_toxin	PF07927.12	gi|564287535|ref|YP_008873735.1|	-	1.7e-15	56.8	0.0	2.1e-15	56.5	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
Fic	PF02661.18	gi|564287538|ref|YP_008873739.1|	-	6.3e-08	33.4	0.0	1.7e-07	32.0	0.0	1.7	1	1	0	1	1	1	1	Fic/DOC	family
OrfB_IS605	PF01385.19	gi|564287542|ref|YP_008873743.1|	-	8.7e-18	64.7	0.1	6.6e-17	61.8	0.0	2.4	2	1	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|564287542|ref|YP_008873743.1|	-	1.8e-17	63.0	2.3	3.9e-17	61.9	1.6	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
ArfGap	PF01412.18	gi|564287542|ref|YP_008873743.1|	-	0.092	12.8	1.4	0.29	11.2	1.4	1.8	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
zf_Rg	PF17915.1	gi|564287542|ref|YP_008873743.1|	-	0.12	11.8	2.9	0.49	9.8	2.2	2.1	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
DUF2484	PF10658.9	gi|564287779|ref|YP_008873744.1|	-	0.33	11.3	8.3	0.6	10.5	5.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2484)
DUF3784	PF12650.7	gi|564287779|ref|YP_008873744.1|	-	0.43	10.8	4.6	6.1	7.1	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
Lon_C	PF05362.13	gi|574087261|ref|YP_008997843.1|	-	6.8e-08	32.3	0.1	1.1e-07	31.6	0.1	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
ChlI	PF13541.6	gi|574087261|ref|YP_008997843.1|	-	2.6e-05	24.1	0.0	7.6e-05	22.6	0.0	1.7	2	0	0	2	2	2	1	Subunit	ChlI	of	Mg-chelatase
TrbC	PF04956.13	gi|564287784|ref|YP_008873751.1|	-	0.017	15.3	5.0	0.04	14.1	5.0	1.7	1	1	0	1	1	1	0	TrbC/VIRB2	family
DUF4134	PF13572.6	gi|564287784|ref|YP_008873751.1|	-	0.042	14.1	1.9	0.12	12.7	1.9	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4134)
Transthyretin	PF00576.21	gi|574087262|ref|YP_008997844.1|	-	0.0049	17.5	0.2	0.26	12.0	0.0	2.9	3	0	0	3	3	3	1	HIUase/Transthyretin	family
Big_1	PF02369.16	gi|574087262|ref|YP_008997844.1|	-	0.0055	16.7	0.6	0.0055	16.7	0.6	2.0	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
AAA_10	PF12846.7	gi|564287787|ref|YP_008873754.1|	-	4.1e-07	29.2	0.6	0.0031	16.5	0.0	2.6	3	0	0	3	3	3	2	AAA-like	domain
DUF87	PF01935.17	gi|564287787|ref|YP_008873754.1|	-	1.9e-06	28.1	0.0	1.9e-06	28.1	0.0	2.8	3	0	0	3	3	3	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|564287787|ref|YP_008873754.1|	-	0.0015	18.8	0.4	0.38	11.0	0.1	2.9	3	0	0	3	3	3	1	AAA	domain
DEAD	PF00270.29	gi|564287787|ref|YP_008873754.1|	-	0.014	15.2	0.0	2.5	7.9	0.0	2.7	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_29	PF13555.6	gi|564287787|ref|YP_008873754.1|	-	0.025	14.3	0.0	0.075	12.8	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|564287787|ref|YP_008873754.1|	-	0.026	14.9	0.0	4.4	7.7	0.0	2.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|564287787|ref|YP_008873754.1|	-	0.038	13.3	0.0	0.092	12.1	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Mg_chelatase	PF01078.21	gi|564287787|ref|YP_008873754.1|	-	0.042	13.2	0.0	0.62	9.4	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|564287787|ref|YP_008873754.1|	-	0.05	14.0	0.6	2.5	8.4	0.0	3.0	3	1	0	3	3	3	0	AAA	ATPase	domain
SbcD_C	PF12320.8	gi|564287787|ref|YP_008873754.1|	-	0.063	13.6	0.9	0.25	11.6	0.9	2.1	1	0	0	1	1	1	0	Type	5	capsule	protein	repressor	C-terminal	domain
PrgI	PF12666.7	gi|564287789|ref|YP_008873756.1|	-	5.7e-05	23.8	0.1	7.3e-05	23.4	0.1	1.1	1	0	0	1	1	1	1	PrgI	family	protein
DUF3487	PF11990.8	gi|564287789|ref|YP_008873756.1|	-	0.0066	16.3	0.1	0.0094	15.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3487)
PIN	PF01850.21	gi|564287545|ref|YP_008873757.1|	-	2.9e-09	37.5	0.0	3.6e-09	37.2	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
YmgD	PF16456.5	gi|564287545|ref|YP_008873757.1|	-	0.0053	16.8	0.0	0.032	14.3	0.0	1.9	1	1	1	2	2	2	1	YmgD	protein
DUF3618	PF12277.8	gi|564287545|ref|YP_008873757.1|	-	0.13	12.6	2.2	0.21	11.9	2.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3618)
VAPB_antitox	PF02697.14	gi|564287546|ref|YP_008873758.1|	-	5.1e-13	49.6	3.9	6e-13	49.4	3.9	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Cupin_4	PF08007.12	gi|564287546|ref|YP_008873758.1|	-	0.024	14.1	0.4	0.027	13.9	0.4	1.0	1	0	0	1	1	1	0	Cupin	superfamily	protein
AAA_10	PF12846.7	gi|564287546|ref|YP_008873758.1|	-	0.04	12.8	0.1	0.042	12.8	0.1	1.0	1	0	0	1	1	1	0	AAA-like	domain
BLOC1_2	PF10046.9	gi|564287546|ref|YP_008873758.1|	-	0.043	14.1	0.4	0.14	12.5	0.1	1.7	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
EspB	PF05802.11	gi|564287546|ref|YP_008873758.1|	-	0.089	12.8	1.1	0.54	10.2	0.2	1.9	2	0	0	2	2	2	0	Enterobacterial	EspB	protein
zf-ribbon_3	PF13248.6	gi|564287790|ref|YP_008873760.1|	-	0.77	9.2	0.1	0.77	9.2	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Rhodanese_C	PF12368.8	gi|564287790|ref|YP_008873760.1|	-	2.9	8.3	10.2	0.74	10.2	3.2	2.3	2	0	0	2	2	2	0	Rhodanase	C-terminal
PRCC	PF10253.9	gi|574087263|ref|YP_008873762.2|	-	0.018	15.8	0.4	0.022	15.5	0.4	1.1	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
Shisa	PF13908.6	gi|574087263|ref|YP_008873762.2|	-	0.032	14.5	0.1	0.051	13.8	0.1	1.3	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
REPA_OB_2	PF16900.5	gi|564287549|ref|YP_008873763.1|	-	0.0017	18.2	0.0	0.0046	16.9	0.0	1.7	2	0	0	2	2	2	1	Replication	protein	A	OB	domain
tRNA_anti-codon	PF01336.25	gi|564287549|ref|YP_008873763.1|	-	0.0021	18.0	0.1	0.0039	17.1	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
CDC24_OB3	PF17244.2	gi|564287549|ref|YP_008873763.1|	-	0.2	11.4	0.0	0.37	10.5	0.0	1.3	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
TrmB	PF01978.19	gi|564287550|ref|YP_008873764.1|	-	1.2e-08	34.7	0.9	4.4e-08	32.9	0.2	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564287550|ref|YP_008873764.1|	-	4.7e-05	23.4	0.5	0.0001	22.3	0.3	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287550|ref|YP_008873764.1|	-	7.6e-05	22.2	0.0	0.006	16.1	0.0	3.1	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
F-112	PF09645.10	gi|564287550|ref|YP_008873764.1|	-	0.00084	19.4	0.0	0.59	10.3	0.0	2.2	2	0	0	2	2	2	2	F-112	protein
HTH_IclR	PF09339.10	gi|564287550|ref|YP_008873764.1|	-	0.0041	16.9	1.0	0.014	15.1	0.1	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564287550|ref|YP_008873764.1|	-	0.006	17.1	0.1	0.016	15.7	0.1	1.9	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|564287550|ref|YP_008873764.1|	-	0.0068	16.3	0.8	0.018	15.0	0.1	2.1	2	1	1	3	3	3	1	MarR	family
HTH_5	PF01022.20	gi|564287550|ref|YP_008873764.1|	-	0.029	14.2	0.0	0.12	12.3	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564287550|ref|YP_008873764.1|	-	0.18	12.0	0.2	7.4	6.8	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|574087264|ref|YP_008997845.1|	-	8.5e-07	28.8	0.0	1.2e-06	28.4	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|574087264|ref|YP_008997845.1|	-	0.02	14.9	0.0	0.026	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|574087264|ref|YP_008997845.1|	-	0.043	13.6	0.0	0.067	13.0	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
GntR	PF00392.21	gi|574087264|ref|YP_008997845.1|	-	0.051	13.2	0.0	0.071	12.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|574087264|ref|YP_008997845.1|	-	0.075	13.0	0.0	0.096	12.7	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|574087264|ref|YP_008997845.1|	-	0.086	12.7	0.0	0.17	11.7	0.0	1.5	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|574087264|ref|YP_008997845.1|	-	0.093	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
MarR_2	PF12802.7	gi|574087264|ref|YP_008997845.1|	-	0.12	12.3	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Glyoxalase	PF00903.25	gi|564287793|ref|YP_008873767.1|	-	1e-06	28.9	0.3	1.6e-06	28.4	0.3	1.3	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|564287793|ref|YP_008873767.1|	-	0.013	15.7	0.4	0.029	14.6	0.4	1.6	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|564287793|ref|YP_008873767.1|	-	0.02	15.0	3.5	1.7	8.7	3.5	2.2	1	1	0	1	1	1	0	Glyoxalase-like	domain
MazE_antitoxin	PF04014.18	gi|564287552|ref|YP_008873769.1|	-	0.00014	21.7	0.1	0.00023	21.0	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|564287552|ref|YP_008873769.1|	-	0.002	18.5	0.0	0.0025	18.2	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
zf-HC2	PF13490.6	gi|564287552|ref|YP_008873769.1|	-	0.08	13.2	0.2	0.13	12.5	0.2	1.4	1	0	0	1	1	1	0	Putative	zinc-finger
PIN	PF01850.21	gi|564287553|ref|YP_008873770.1|	-	1.2e-17	64.6	0.3	1.3e-17	64.4	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
TrwB_AAD_bind	PF10412.9	gi|564287555|ref|YP_008873772.1|	-	3.8e-17	62.3	0.0	5.1e-17	61.9	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|564287555|ref|YP_008873772.1|	-	9.3e-12	45.0	0.4	1.8e-11	44.1	0.0	1.7	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|564287555|ref|YP_008873772.1|	-	0.00079	18.3	0.0	0.0012	17.8	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
D123	PF07065.14	gi|564287555|ref|YP_008873772.1|	-	0.77	8.9	0.0	0.77	8.9	0.0	2.2	2	0	0	2	2	2	0	D123
HlyE	PF06109.13	gi|564287797|ref|YP_008873777.1|	-	0.031	13.6	0.0	0.035	13.4	0.0	1.1	1	0	0	1	1	1	0	Haemolysin	E	(HlyE)
SbcCD_C	PF13558.6	gi|564287558|ref|YP_008873778.1|	-	8.2e-09	35.6	0.0	1.8e-08	34.5	0.0	1.6	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
Spc7	PF08317.11	gi|564287558|ref|YP_008873778.1|	-	2.6e-06	26.5	42.4	0.00036	19.5	19.5	2.9	2	1	0	2	2	2	2	Spc7	kinetochore	protein
AAA_13	PF13166.6	gi|564287558|ref|YP_008873778.1|	-	6.9e-06	25.0	26.9	1.6e-05	23.8	2.3	3.5	1	1	1	2	2	2	1	AAA	domain
CENP-F_leu_zip	PF10473.9	gi|564287558|ref|YP_008873778.1|	-	6.1e-05	23.1	42.5	0.082	12.9	12.6	3.7	2	1	1	3	3	3	3	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF2326	PF10088.9	gi|564287558|ref|YP_008873778.1|	-	0.00011	22.0	0.6	0.00074	19.3	0.1	2.5	2	0	0	2	2	2	1	Uncharacterised	protein	conserved	in	bacteria	(DUF2326)
Tropomyosin_1	PF12718.7	gi|564287558|ref|YP_008873778.1|	-	0.00025	21.2	21.9	0.00025	21.2	21.9	3.4	2	1	1	3	3	3	1	Tropomyosin	like
TPR_MLP1_2	PF07926.12	gi|564287558|ref|YP_008873778.1|	-	0.00048	20.2	37.4	0.0091	16.1	1.1	4.4	3	1	1	4	4	4	2	TPR/MLP1/MLP2-like	protein
CALCOCO1	PF07888.11	gi|564287558|ref|YP_008873778.1|	-	0.0019	17.2	16.8	0.0019	17.2	16.8	2.2	1	1	1	2	2	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
THOC7	PF05615.13	gi|564287558|ref|YP_008873778.1|	-	0.0091	16.3	9.3	0.0091	16.3	9.3	4.3	1	1	3	4	4	3	1	Tho	complex	subunit	7
DUF1664	PF07889.12	gi|564287558|ref|YP_008873778.1|	-	0.0093	16.0	27.7	0.12	12.4	1.0	4.3	2	2	3	5	5	5	2	Protein	of	unknown	function	(DUF1664)
Seryl_tRNA_N	PF02403.22	gi|564287558|ref|YP_008873778.1|	-	0.023	14.9	28.9	0.042	14.1	0.8	4.5	3	1	1	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
zf-Di19	PF05605.12	gi|564287558|ref|YP_008873778.1|	-	0.025	14.9	0.2	7.3	7.0	0.1	2.5	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF4140	PF13600.6	gi|564287558|ref|YP_008873778.1|	-	0.027	14.9	0.7	0.027	14.9	0.7	5.1	4	2	2	6	6	5	0	N-terminal	domain	of	unknown	function	(DUF4140)
FlaC_arch	PF05377.11	gi|564287558|ref|YP_008873778.1|	-	0.055	13.9	1.1	0.055	13.9	1.1	6.5	4	2	1	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Prefoldin_2	PF01920.20	gi|564287558|ref|YP_008873778.1|	-	0.058	13.3	39.8	0.12	12.4	1.6	5.3	4	2	1	5	5	5	0	Prefoldin	subunit
DUF3450	PF11932.8	gi|564287558|ref|YP_008873778.1|	-	0.16	11.3	41.1	0.24	10.7	1.3	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF3450)
IBV_3A	PF03617.13	gi|564287558|ref|YP_008873778.1|	-	0.17	11.9	0.5	0.41	10.7	0.5	1.5	1	0	0	1	1	1	0	IBV	3A	protein
zf-ribbon_3	PF13248.6	gi|564287558|ref|YP_008873778.1|	-	0.21	11.0	5.4	1.6	8.3	5.4	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
BLOC1_2	PF10046.9	gi|564287558|ref|YP_008873778.1|	-	0.22	11.8	31.2	0.22	11.8	0.9	4.4	3	1	0	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
L31	PF09784.9	gi|564287558|ref|YP_008873778.1|	-	0.25	11.8	5.5	0.37	11.2	0.0	2.9	2	1	0	3	3	3	0	Mitochondrial	ribosomal	protein	L31
AAA_23	PF13476.6	gi|564287558|ref|YP_008873778.1|	-	0.35	11.3	55.8	1.8e+04	-17.3	55.8	4.4	1	1	0	1	1	0	0	AAA	domain
ZapB	PF06005.12	gi|564287558|ref|YP_008873778.1|	-	0.37	11.3	47.0	0.14	12.6	4.5	4.9	2	2	2	4	4	3	0	Cell	division	protein	ZapB
dCache_1	PF02743.18	gi|564287558|ref|YP_008873778.1|	-	0.47	10.2	3.9	0.71	9.6	0.1	2.5	1	1	1	2	2	2	0	Cache	domain
FapA	PF03961.13	gi|564287558|ref|YP_008873778.1|	-	1.1	7.8	25.3	1.9	7.0	11.0	2.9	2	1	0	2	2	2	0	Flagellar	Assembly	Protein	A
GCN5L1	PF06320.13	gi|564287558|ref|YP_008873778.1|	-	1.3	9.2	17.8	3.2	7.9	0.2	3.9	2	2	1	3	3	3	0	GCN5-like	protein	1	(GCN5L1)
MCPsignal	PF00015.21	gi|564287558|ref|YP_008873778.1|	-	1.5	8.6	10.6	3	7.6	0.5	2.9	2	1	1	3	3	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PI3K_P85_iSH2	PF16454.5	gi|564287558|ref|YP_008873778.1|	-	2	8.0	37.9	0.12	11.9	0.5	4.3	2	2	2	4	4	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
DUF3584	PF12128.8	gi|564287558|ref|YP_008873778.1|	-	2.2	5.7	37.3	53	1.1	37.3	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DivIC	PF04977.15	gi|564287558|ref|YP_008873778.1|	-	3.6	7.4	36.7	1.8	8.4	3.4	5.2	3	1	2	5	5	5	0	Septum	formation	initiator
YtxH	PF12732.7	gi|564287558|ref|YP_008873778.1|	-	4.7	7.8	11.7	2	9.0	0.8	3.8	3	2	0	3	3	3	0	YtxH-like	protein
FliD_N	PF02465.18	gi|564287558|ref|YP_008873778.1|	-	4.7	8.0	10.7	6	7.6	0.8	3.6	2	2	1	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
NPV_P10	PF05531.12	gi|564287558|ref|YP_008873778.1|	-	4.9	7.7	20.0	1.8	9.1	1.1	4.6	3	1	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
PilJ	PF13675.6	gi|564287558|ref|YP_008873778.1|	-	5.4	7.1	16.8	5.6	7.0	1.4	3.9	3	1	1	4	4	4	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
MscS_porin	PF12795.7	gi|564287558|ref|YP_008873778.1|	-	6.3	6.3	41.2	12	5.4	16.7	3.3	2	2	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
LMBR1	PF04791.16	gi|564287558|ref|YP_008873778.1|	-	6.6	5.5	19.1	2.1	7.1	3.3	2.4	1	1	0	2	2	2	0	LMBR1-like	membrane	protein
DUF5082	PF16888.5	gi|564287558|ref|YP_008873778.1|	-	7.1	6.9	32.0	0.16	12.2	13.6	3.5	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
APG6_N	PF17675.1	gi|564287558|ref|YP_008873778.1|	-	7.6	7.1	53.9	2.6	8.6	3.1	3.9	2	2	1	3	3	3	0	Apg6	coiled-coil	region
Laminin_II	PF06009.12	gi|564287558|ref|YP_008873778.1|	-	7.7	6.5	28.2	0.72	9.9	5.6	4.5	2	2	2	4	4	4	0	Laminin	Domain	II
WXG100	PF06013.12	gi|564287558|ref|YP_008873778.1|	-	9	6.6	15.1	8.3	6.7	1.0	4.7	4	1	1	5	5	5	0	Proteins	of	100	residues	with	WXG
HTH_20	PF12840.7	gi|564287559|ref|YP_008873780.1|	-	0.00036	20.5	0.1	0.00057	19.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|564287559|ref|YP_008873780.1|	-	0.0039	17.1	0.0	0.0079	16.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TrmB	PF01978.19	gi|564287559|ref|YP_008873780.1|	-	0.013	15.4	0.0	0.018	14.9	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|564287559|ref|YP_008873780.1|	-	0.018	14.6	0.1	0.029	13.9	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
bPH_3	PF14470.6	gi|564287799|ref|YP_008873781.1|	-	8.1e-05	22.9	0.0	0.00016	21.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	PH	domain
VAPB_antitox	PF02697.14	gi|564287560|ref|YP_008873782.1|	-	1.3e-13	51.5	4.7	1.7e-13	51.1	4.7	1.2	1	0	0	1	1	1	1	Putative	antitoxin
EURL	PF06937.11	gi|564287560|ref|YP_008873782.1|	-	0.027	13.9	0.1	0.028	13.9	0.1	1.1	1	0	0	1	1	1	0	EURL	protein
PIN	PF01850.21	gi|564287561|ref|YP_008873783.1|	-	1e-10	42.2	0.0	1.2e-10	41.9	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
PCNA_N	PF00705.18	gi|564287563|ref|YP_008873785.1|	-	0.00079	19.1	0.0	0.0018	18.0	0.0	1.6	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
SprT-like	PF10263.9	gi|564287565|ref|YP_008873787.1|	-	0.15	11.9	0.1	0.59	10.0	0.1	1.8	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|564287565|ref|YP_008873787.1|	-	0.44	9.9	2.9	0.79	9.0	0.1	2.0	2	0	0	2	2	2	0	Putative	aminopeptidase
zf-ribbon_3	PF13248.6	gi|564287565|ref|YP_008873787.1|	-	0.59	9.6	2.4	0.64	9.5	0.7	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
PQQ_3	PF13570.6	gi|564287566|ref|YP_008873788.1|	-	1.1e-33	114.8	21.1	8.5e-08	32.5	0.2	8.1	7	1	0	7	7	7	6	PQQ-like	domain
PQQ_2	PF13360.6	gi|564287566|ref|YP_008873788.1|	-	3e-26	92.5	11.8	1.3e-19	70.7	0.9	3.5	1	1	1	2	2	2	2	PQQ-like	domain
PQQ	PF01011.21	gi|564287566|ref|YP_008873788.1|	-	3.7e-16	58.2	15.9	1.3e-05	24.9	0.0	6.4	7	1	0	7	7	7	4	PQQ	enzyme	repeat
WD40_like	PF17005.5	gi|564287566|ref|YP_008873788.1|	-	0.064	12.6	0.0	0.15	11.4	0.0	1.5	2	0	0	2	2	2	0	WD40-like	domain
Alginate_lyase	PF05426.12	gi|564287567|ref|YP_008873789.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Alginate	lyase
NPV_P10	PF05531.12	gi|564287570|ref|YP_008873793.1|	-	0.022	15.2	0.4	0.033	14.7	0.4	1.4	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
ArsR	PF09824.9	gi|564287570|ref|YP_008873793.1|	-	0.17	11.5	0.4	0.97	9.0	0.0	1.9	1	1	1	2	2	2	0	ArsR	transcriptional	regulator
DUF2065	PF09838.9	gi|564287575|ref|YP_008873799.1|	-	0.011	15.7	0.0	1.5	8.9	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
MNSV_P7B	PF06692.11	gi|564287802|ref|YP_008873800.1|	-	0.13	12.3	0.5	0.14	12.2	0.5	1.1	1	0	0	1	1	1	0	Melon	necrotic	spot	virus	P7B	protein
HemY_N	PF07219.13	gi|564287802|ref|YP_008873800.1|	-	0.14	12.4	0.4	0.13	12.5	0.4	1.1	1	0	0	1	1	1	0	HemY	protein	N-terminus
SWIM	PF04434.17	gi|564287576|ref|YP_008873801.1|	-	0.0066	16.1	0.1	0.0066	16.1	0.1	2.4	2	1	0	2	2	2	1	SWIM	zinc	finger
TFIIB	PF00382.19	gi|564287577|ref|YP_008873802.1|	-	4e-17	62.0	2.3	4e-09	36.4	1.7	2.5	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564287577|ref|YP_008873802.1|	-	3.1e-10	39.4	3.6	3.1e-10	39.4	3.6	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|564287577|ref|YP_008873802.1|	-	0.0016	18.3	0.5	0.004	17.0	0.5	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_23	PF13384.6	gi|564287577|ref|YP_008873802.1|	-	0.0068	16.2	0.7	1.8	8.5	0.0	3.6	4	0	0	4	4	4	1	Homeodomain-like	domain
EFF-AFF	PF14884.6	gi|564287577|ref|YP_008873802.1|	-	0.01	14.0	0.0	0.015	13.5	0.0	1.1	1	0	0	1	1	1	0	Type	I	membrane	glycoproteins	cell-cell	fusogen
XRCC4	PF06632.12	gi|564287577|ref|YP_008873802.1|	-	0.019	13.8	2.3	0.027	13.3	2.3	1.1	1	0	0	1	1	1	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
DZR	PF12773.7	gi|564287577|ref|YP_008873802.1|	-	0.069	13.2	1.4	0.15	12.1	1.4	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564287577|ref|YP_008873802.1|	-	0.11	12.0	3.2	0.32	10.5	3.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564287577|ref|YP_008873802.1|	-	0.12	12.4	1.9	0.17	11.9	0.7	1.8	2	0	0	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|564287577|ref|YP_008873802.1|	-	0.88	9.7	4.9	3.3	7.9	0.7	2.5	1	1	2	3	3	3	0	Zinc	ribbon	domain
HicB_lk_antitox	PF15919.5	gi|564287578|ref|YP_008873804.1|	-	0.0054	16.8	0.0	0.01	16.0	0.0	1.4	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
RHH_1	PF01402.21	gi|564287578|ref|YP_008873804.1|	-	0.0078	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParE_toxin	PF05016.15	gi|564287579|ref|YP_008873805.1|	-	6.2e-05	23.5	0.0	8.1e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Gp49	PF05973.14	gi|564287579|ref|YP_008873805.1|	-	0.059	13.5	0.0	0.073	13.2	0.0	1.1	1	0	0	1	1	1	0	Phage	derived	protein	Gp49-like	(DUF891)
CBM-like	PF14683.6	gi|564287805|ref|YP_008873809.1|	-	0.027	14.4	0.0	0.032	14.1	0.0	1.1	1	0	0	1	1	1	0	Polysaccharide	lyase	family	4,	domain	III
GPI-anchored	PF10342.9	gi|564287805|ref|YP_008873809.1|	-	0.049	14.4	0.2	0.14	12.9	0.2	1.8	1	1	0	1	1	1	0	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
DUF1344	PF07076.11	gi|564287805|ref|YP_008873809.1|	-	0.094	12.6	0.1	0.17	11.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1344)
N6_Mtase	PF02384.16	gi|564287582|ref|YP_008873810.1|	-	1.3e-11	44.3	0.0	1.8e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
N6_N4_Mtase	PF01555.18	gi|564287582|ref|YP_008873810.1|	-	0.076	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	DNA	methylase
Methyltransf_25	PF13649.6	gi|564287582|ref|YP_008873810.1|	-	0.11	13.2	0.1	0.44	11.3	0.0	2.0	2	1	0	2	2	2	0	Methyltransferase	domain
DUF664	PF04978.12	gi|564287583|ref|YP_008873811.1|	-	0.11	13.0	0.2	0.12	12.7	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF664)
FANCL_C	PF11793.8	gi|564287584|ref|YP_008873812.1|	-	0.0026	17.9	0.6	0.4	10.9	0.1	2.1	1	1	1	2	2	2	2	FANCL	C-terminal	domain
Terminase_GpA	PF05876.12	gi|564287584|ref|YP_008873812.1|	-	0.0091	14.6	0.5	0.0092	14.6	0.5	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zf-Di19	PF05605.12	gi|564287584|ref|YP_008873812.1|	-	0.0094	16.2	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
Rubredoxin_2	PF18073.1	gi|564287584|ref|YP_008873812.1|	-	0.053	13.3	1.6	0.17	11.6	0.1	2.0	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DiS_P_DiS	PF06750.13	gi|564287584|ref|YP_008873812.1|	-	0.13	12.4	0.1	0.7	10.0	0.0	1.8	2	0	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Colicin_immun	PF09204.10	gi|564287810|ref|YP_008873819.1|	-	1.4e-10	41.6	1.1	1.8e-10	41.2	1.1	1.2	1	0	0	1	1	1	1	Bacterial	self-protective	colicin-like	immunity
DBD_HTH	PF18430.1	gi|564287810|ref|YP_008873819.1|	-	0.12	12.1	0.1	0.26	11.1	0.1	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	domain
ATP-grasp_5	PF13549.6	gi|564287810|ref|YP_008873819.1|	-	0.16	11.4	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	ATP-grasp	domain
Colicin_D	PF11429.8	gi|564287587|ref|YP_008873820.1|	-	1.7e-16	60.4	0.2	2e-16	60.2	0.2	1.1	1	0	0	1	1	1	1	Colicin	D
2C_adapt	PF08793.10	gi|564287587|ref|YP_008873820.1|	-	0.11	12.7	0.1	21	5.4	0.1	2.4	2	0	0	2	2	2	0	2-cysteine	adaptor	domain
EF-hand_6	PF13405.6	gi|564287811|ref|YP_008873821.1|	-	0.016	15.1	0.6	5.2	7.3	0.2	2.5	2	0	0	2	2	2	0	EF-hand	domain
EF-hand_7	PF13499.6	gi|564287811|ref|YP_008873821.1|	-	0.025	15.0	1.0	0.078	13.4	1.0	1.9	1	1	0	1	1	1	0	EF-hand	domain	pair
EF-hand_1	PF00036.32	gi|564287811|ref|YP_008873821.1|	-	0.15	11.7	0.3	23	4.8	0.0	2.5	2	0	0	2	2	2	0	EF	hand
DDE_3	PF13358.6	gi|564287590|ref|YP_008873824.1|	-	2.9e-32	111.5	0.0	3.5e-32	111.2	0.0	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|564287590|ref|YP_008873824.1|	-	0.00019	21.6	0.0	0.00026	21.2	0.0	1.2	1	0	0	1	1	1	1	Integrase	core	domain
HTH_33	PF13592.6	gi|574087267|ref|YP_008997847.1|	-	6.7e-18	64.1	1.5	1.1e-17	63.3	0.4	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|574087267|ref|YP_008997847.1|	-	2.9e-08	34.2	0.7	6.1e-08	33.2	0.3	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_31	PF13560.6	gi|574087267|ref|YP_008997847.1|	-	0.003	17.9	1.4	0.031	14.6	0.1	2.9	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|574087267|ref|YP_008997847.1|	-	0.015	15.1	0.0	0.038	13.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_21	PF13276.6	gi|574087267|ref|YP_008997847.1|	-	0.019	15.1	0.1	0.11	12.7	0.0	2.1	2	1	0	2	2	2	0	HTH-like	domain
HTH_29	PF13551.6	gi|574087267|ref|YP_008997847.1|	-	0.025	14.6	0.2	0.13	12.4	0.0	2.2	2	1	0	2	2	2	0	Winged	helix-turn	helix
DUF1778	PF08681.11	gi|574087267|ref|YP_008997847.1|	-	0.087	12.8	0.2	1.4	8.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1778)
DDT	PF02791.17	gi|574087267|ref|YP_008997847.1|	-	0.12	12.7	0.1	9.2	6.7	0.0	2.2	2	0	0	2	2	2	0	DDT	domain
DDE_Tnp_IS1595	PF12762.7	gi|564287591|ref|YP_008873825.1|	-	1.4e-12	47.9	0.0	1.8e-12	47.5	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
DDE_Tnp_1	PF01609.21	gi|564287592|ref|YP_008873826.1|	-	9.2e-06	25.4	0.7	1.8e-05	24.5	0.7	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
VWA	PF00092.28	gi|564287813|ref|YP_008873828.1|	-	2e-22	80.3	0.1	4e-22	79.3	0.1	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|564287813|ref|YP_008873828.1|	-	8.5e-15	55.3	0.2	4.9e-14	52.9	0.0	2.5	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Dockerin_1	PF00404.18	gi|564287813|ref|YP_008873828.1|	-	4.8e-07	29.9	0.7	4.8e-07	29.9	0.7	4.4	4	0	0	4	4	4	1	Dockerin	type	I	domain
VWA_3	PF13768.6	gi|564287813|ref|YP_008873828.1|	-	1.5e-06	28.2	0.0	3.6e-06	27.0	0.0	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF3883	PF13020.6	gi|564287813|ref|YP_008873828.1|	-	0.019	15.0	0.3	0.044	13.8	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3883)
VWA_CoxE	PF05762.14	gi|564287813|ref|YP_008873828.1|	-	0.033	13.6	0.0	0.085	12.2	0.0	1.6	1	0	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
Nop14	PF04147.12	gi|564287593|ref|YP_008873829.1|	-	2.4	6.3	5.6	2.7	6.1	5.6	1.0	1	0	0	1	1	1	0	Nop14-like	family
Phage_integrase	PF00589.22	gi|564287594|ref|YP_008873830.1|	-	4.9e-15	55.7	0.0	3.5e-14	53.0	0.0	2.1	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|564287594|ref|YP_008873830.1|	-	2.4e-05	24.6	0.0	4.4e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564287594|ref|YP_008873830.1|	-	4.5e-05	23.7	0.3	0.00014	22.1	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3435	PF11917.8	gi|564287594|ref|YP_008873830.1|	-	0.069	12.1	0.0	0.32	9.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3435)
Arg_decarbox_C	PF17944.1	gi|564287594|ref|YP_008873830.1|	-	0.091	13.3	0.0	0.35	11.5	0.0	2.0	2	0	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
Phage_int_SAM_4	PF13495.6	gi|564287594|ref|YP_008873830.1|	-	0.14	12.7	0.0	0.33	11.5	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DDE_Tnp_1	PF01609.21	gi|564287595|ref|YP_008873831.1|	-	4e-10	39.7	0.3	7.1e-10	38.9	0.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|564287595|ref|YP_008873831.1|	-	3.6e-06	26.9	0.0	2e-05	24.5	0.0	2.3	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_5	PF13546.6	gi|564287595|ref|YP_008873831.1|	-	0.00029	20.3	0.3	0.00058	19.3	0.3	1.5	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
Chordopox_A13L	PF05961.11	gi|564287814|ref|YP_008873832.1|	-	0.16	12.3	0.0	0.19	12.0	0.0	1.3	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
FixQ	PF05545.11	gi|564287814|ref|YP_008873832.1|	-	3	7.9	5.5	23	5.1	5.5	2.0	1	1	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Fic	PF02661.18	gi|564287596|ref|YP_008873833.1|	-	3e-25	88.9	0.0	1.7e-24	86.5	0.0	2.2	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.6	gi|564287596|ref|YP_008873833.1|	-	1.8e-24	85.5	0.0	4.7e-24	84.2	0.0	1.7	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_Crp_2	PF13545.6	gi|564287596|ref|YP_008873833.1|	-	0.021	14.8	0.2	0.085	12.8	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_17	PF12728.7	gi|564287596|ref|YP_008873833.1|	-	0.044	14.0	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4172	PF13776.6	gi|564287596|ref|YP_008873833.1|	-	0.049	14.0	0.0	0.14	12.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
FtsK_gamma	PF09397.10	gi|564287596|ref|YP_008873833.1|	-	0.067	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	Ftsk	gamma	domain
DDE_Tnp_IS240	PF13610.6	gi|564287597|ref|YP_008873834.1|	-	4.7e-21	75.5	0.1	6.7e-21	75.0	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|564287597|ref|YP_008873834.1|	-	2.6e-06	27.1	2.3	6.4e-06	25.9	2.3	1.7	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.10	gi|564287597|ref|YP_008873834.1|	-	0.0056	16.7	1.6	0.12	12.4	0.0	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
rve	PF00665.26	gi|564287597|ref|YP_008873834.1|	-	0.0062	16.7	0.3	0.014	15.6	0.3	1.8	1	1	0	1	1	1	1	Integrase	core	domain
DnaT	PF17948.1	gi|564287597|ref|YP_008873834.1|	-	0.041	13.6	2.7	0.099	12.4	2.7	1.6	1	0	0	1	1	1	0	DnaT	DNA-binding	domain
DUF21	PF01595.20	gi|564287599|ref|YP_008873836.1|	-	4.1e-34	117.8	0.1	7.2e-34	117.0	0.1	1.3	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|564287599|ref|YP_008873836.1|	-	4.8e-05	23.7	1.3	0.00099	19.5	0.0	2.4	2	0	0	2	2	2	1	CBS	domain
DUF3102	PF11300.8	gi|564287599|ref|YP_008873836.1|	-	0.15	12.3	0.0	0.25	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3102)
F420_ligase	PF01996.16	gi|564287600|ref|YP_008873837.1|	-	3.5e-46	157.6	1.7	4e-46	157.4	1.7	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
DUF3403	PF11883.8	gi|564287601|ref|YP_008873838.1|	-	0.29	11.3	0.1	0.29	11.3	0.1	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3403)
UCR_Fe-S_N	PF10399.9	gi|564287815|ref|YP_008873839.1|	-	7.2	6.0	7.5	44	3.5	0.0	2.6	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
HTH_20	PF12840.7	gi|564287602|ref|YP_008873840.1|	-	8.5e-14	51.4	1.1	1.4e-13	50.7	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287602|ref|YP_008873840.1|	-	5.2e-08	32.3	0.0	2.2e-07	30.3	0.0	2.0	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564287602|ref|YP_008873840.1|	-	4.8e-06	26.4	0.0	1.6e-05	24.7	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564287602|ref|YP_008873840.1|	-	8.7e-05	22.3	0.0	0.00015	21.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564287602|ref|YP_008873840.1|	-	0.00032	20.5	0.0	0.001	18.9	0.0	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|564287602|ref|YP_008873840.1|	-	0.0029	17.7	0.6	0.025	14.7	0.4	2.3	1	1	0	1	1	1	1	DprA	winged	helix	domain
FaeA	PF04703.12	gi|564287602|ref|YP_008873840.1|	-	0.0034	17.7	0.0	0.0077	16.6	0.0	1.7	1	1	0	1	1	1	1	FaeA-like	protein
HTH_11	PF08279.12	gi|564287602|ref|YP_008873840.1|	-	0.0065	16.4	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
LexA_DNA_bind	PF01726.16	gi|564287602|ref|YP_008873840.1|	-	0.0088	15.8	0.0	0.017	14.9	0.0	1.5	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|564287602|ref|YP_008873840.1|	-	0.015	15.1	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|564287602|ref|YP_008873840.1|	-	0.061	13.3	0.0	0.092	12.7	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
B-block_TFIIIC	PF04182.12	gi|564287602|ref|YP_008873840.1|	-	0.095	12.9	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Interferon	PF00143.19	gi|564287602|ref|YP_008873840.1|	-	0.096	12.9	0.1	0.12	12.5	0.1	1.3	1	1	0	1	1	1	0	Interferon	alpha/beta	domain
RepL	PF05732.11	gi|564287602|ref|YP_008873840.1|	-	0.11	12.0	0.0	0.21	11.0	0.0	1.5	1	1	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_27	PF13463.6	gi|564287602|ref|YP_008873840.1|	-	0.12	12.9	0.0	0.34	11.4	0.0	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|564287602|ref|YP_008873840.1|	-	0.15	12.1	0.0	0.34	10.9	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|564287602|ref|YP_008873840.1|	-	0.17	12.1	0.0	0.27	11.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF5038	PF16441.5	gi|564287816|ref|YP_008873841.1|	-	0.073	13.1	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5038)
Acetyltransf_1	PF00583.25	gi|564287603|ref|YP_008873842.1|	-	3.2e-17	62.9	0.0	5e-17	62.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564287603|ref|YP_008873842.1|	-	1.4e-10	41.2	0.0	2.1e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564287603|ref|YP_008873842.1|	-	2e-10	40.9	0.0	3.1e-10	40.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|564287603|ref|YP_008873842.1|	-	1.4e-06	28.1	0.0	2e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564287603|ref|YP_008873842.1|	-	5e-05	24.0	0.0	6.6e-05	23.6	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564287603|ref|YP_008873842.1|	-	0.0001	22.2	0.0	0.00016	21.6	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|564287603|ref|YP_008873842.1|	-	0.0016	18.6	0.0	0.0022	18.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564287603|ref|YP_008873842.1|	-	0.003	17.7	0.0	0.0057	16.8	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|564287603|ref|YP_008873842.1|	-	0.15	12.1	0.0	0.25	11.4	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|564287603|ref|YP_008873842.1|	-	0.21	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase
MASE3	PF17159.4	gi|564287604|ref|YP_008873843.1|	-	0.035	13.7	5.3	0.049	13.3	5.3	1.2	1	1	0	1	1	1	0	Membrane-associated	sensor	domain
GPDPase_memb	PF10110.9	gi|564287817|ref|YP_008873845.1|	-	0.0007	18.5	2.0	0.00088	18.1	2.0	1.2	1	0	0	1	1	1	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF1700	PF08006.11	gi|564287817|ref|YP_008873845.1|	-	1.5	8.3	3.9	2.3	7.7	3.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
PQQ_2	PF13360.6	gi|564287606|ref|YP_008873846.1|	-	3.9e-35	121.5	4.4	1.1e-16	61.2	0.2	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|564287606|ref|YP_008873846.1|	-	1.5e-28	98.5	17.5	5.1e-06	26.8	0.0	8.1	8	0	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|564287606|ref|YP_008873846.1|	-	3.3e-13	48.9	8.0	0.045	13.7	0.0	8.2	10	0	0	10	10	10	4	PQQ	enzyme	repeat
HNH_2	PF13391.6	gi|564287607|ref|YP_008873847.1|	-	5.8e-10	39.2	0.1	1.9e-09	37.5	0.1	1.9	1	1	0	1	1	1	1	HNH	endonuclease
HTH_45	PF14947.6	gi|564287607|ref|YP_008873847.1|	-	2.4e-05	24.2	0.0	0.011	15.8	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix
HemN_C	PF06969.16	gi|564287607|ref|YP_008873847.1|	-	0.00092	19.2	0.1	1.8	8.7	0.0	2.4	2	0	0	2	2	2	2	HemN	C-terminal	domain
AAA_assoc_C	PF09821.9	gi|564287607|ref|YP_008873847.1|	-	0.0062	17.1	0.0	0.2	12.2	0.0	2.3	2	0	0	2	2	2	1	C-terminal	AAA-associated	domain
DUF4423	PF14394.6	gi|564287607|ref|YP_008873847.1|	-	0.063	13.0	0.0	0.87	9.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
DUF2953	PF11167.8	gi|564287607|ref|YP_008873847.1|	-	0.17	12.0	0.1	0.69	10.0	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2953)
Exonuc_VII_S	PF02609.16	gi|564287608|ref|YP_008873848.1|	-	6.7e-12	45.3	1.0	7.7e-12	45.1	1.0	1.1	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
Wbp11	PF09429.10	gi|564287608|ref|YP_008873848.1|	-	0.1	13.0	0.6	0.12	12.8	0.6	1.1	1	0	0	1	1	1	0	WW	domain	binding	protein	11
Rnk_N	PF14760.6	gi|564287608|ref|YP_008873848.1|	-	0.22	12.0	4.1	1.6	9.2	4.1	2.1	1	1	0	1	1	1	0	Rnk	N-terminus
Exonuc_VII_L	PF02601.15	gi|564287609|ref|YP_008873849.1|	-	4.8e-53	180.7	0.4	6.6e-53	180.3	0.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.6	gi|564287609|ref|YP_008873849.1|	-	1.2e-15	57.5	0.2	2.3e-15	56.6	0.2	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
SNARE	PF05739.19	gi|564287609|ref|YP_008873849.1|	-	0.015	15.3	0.1	0.049	13.6	0.1	1.9	1	0	0	1	1	1	0	SNARE	domain
DUF4407	PF14362.6	gi|564287609|ref|YP_008873849.1|	-	0.016	14.6	1.8	0.026	13.9	1.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
tRNA_anti-codon	PF01336.25	gi|564287609|ref|YP_008873849.1|	-	0.034	14.1	0.2	0.059	13.4	0.2	1.4	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
SSB	PF00436.25	gi|564287609|ref|YP_008873849.1|	-	0.041	13.9	0.1	0.11	12.5	0.1	1.7	1	0	0	1	1	1	0	Single-strand	binding	protein	family
Pex24p	PF06398.11	gi|564287609|ref|YP_008873849.1|	-	0.094	11.7	0.0	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
DUF2721	PF11026.8	gi|564287609|ref|YP_008873849.1|	-	0.19	11.6	2.8	0.33	10.9	1.7	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
KfrA_N	PF11740.8	gi|564287609|ref|YP_008873849.1|	-	0.74	10.5	5.4	0.68	10.6	3.4	2.0	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
DUF4164	PF13747.6	gi|564287609|ref|YP_008873849.1|	-	0.77	10.1	10.6	10	6.5	0.1	3.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF5345	PF17280.2	gi|564287609|ref|YP_008873849.1|	-	9.1	6.3	6.0	89	3.2	6.0	2.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5345)
AAA_31	PF13614.6	gi|564287610|ref|YP_008873850.1|	-	1.9e-23	83.3	0.0	2.8e-23	82.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287610|ref|YP_008873850.1|	-	2.3e-11	43.9	0.0	3.4e-11	43.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|564287610|ref|YP_008873850.1|	-	4.9e-06	25.9	0.0	9.2e-06	25.1	0.0	1.4	1	1	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|564287610|ref|YP_008873850.1|	-	1.7e-05	24.3	0.1	0.0087	15.4	0.0	2.2	1	1	0	2	2	2	2	ATPase	MipZ
ParA	PF10609.9	gi|564287610|ref|YP_008873850.1|	-	4e-05	23.2	0.1	0.00012	21.6	0.1	1.8	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|564287610|ref|YP_008873850.1|	-	0.0012	18.3	0.0	0.0022	17.5	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|564287610|ref|YP_008873850.1|	-	0.002	17.6	0.0	0.0033	17.0	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|564287610|ref|YP_008873850.1|	-	0.012	15.2	0.0	0.04	13.6	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Phosphodiest	PF01663.22	gi|564287610|ref|YP_008873850.1|	-	0.06	12.9	0.1	0.13	11.8	0.1	1.5	2	0	0	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF5336	PF17270.2	gi|564287818|ref|YP_008873851.1|	-	0.092	12.4	0.9	0.21	11.2	0.9	1.7	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5336)
DUF2070	PF09843.9	gi|564287818|ref|YP_008873851.1|	-	0.34	9.1	1.1	0.45	8.7	1.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
ABC_tran	PF00005.27	gi|564287611|ref|YP_008873853.1|	-	2.1e-37	128.7	0.0	3.4e-37	128.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|564287611|ref|YP_008873853.1|	-	1.1e-30	107.2	0.3	1.4e-30	106.9	0.3	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|564287611|ref|YP_008873853.1|	-	0.00034	20.1	0.1	0.018	14.5	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|564287611|ref|YP_008873853.1|	-	0.0008	19.4	0.0	0.0017	18.3	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|564287611|ref|YP_008873853.1|	-	0.0037	17.5	0.3	0.025	14.8	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564287611|ref|YP_008873853.1|	-	0.0096	16.3	0.0	0.088	13.2	0.0	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|564287611|ref|YP_008873853.1|	-	0.013	15.9	1.3	0.045	14.1	1.3	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287611|ref|YP_008873853.1|	-	0.019	14.7	0.1	0.048	13.4	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|564287611|ref|YP_008873853.1|	-	0.02	15.5	0.1	0.069	13.7	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|564287611|ref|YP_008873853.1|	-	0.024	15.1	0.0	0.039	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|564287611|ref|YP_008873853.1|	-	0.033	14.2	0.4	0.14	12.1	0.3	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_21	PF13304.6	gi|564287611|ref|YP_008873853.1|	-	0.037	13.8	0.0	0.13	12.0	0.0	1.8	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Cytidylate_kin	PF02224.18	gi|564287611|ref|YP_008873853.1|	-	0.055	13.2	0.0	0.089	12.5	0.0	1.3	1	0	0	1	1	1	0	Cytidylate	kinase
IstB_IS21	PF01695.17	gi|564287611|ref|YP_008873853.1|	-	0.067	12.9	0.0	0.39	10.4	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF87	PF01935.17	gi|564287611|ref|YP_008873853.1|	-	0.079	13.0	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
Zeta_toxin	PF06414.12	gi|564287611|ref|YP_008873853.1|	-	0.084	12.1	0.0	0.21	10.9	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
TsaE	PF02367.17	gi|564287611|ref|YP_008873853.1|	-	0.1	12.6	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Bax1-I	PF01027.20	gi|564287611|ref|YP_008873853.1|	-	0.11	12.3	0.1	0.11	12.3	0.1	2.4	3	0	0	3	3	3	0	Inhibitor	of	apoptosis-promoting	Bax1
MMR_HSR1	PF01926.23	gi|564287611|ref|YP_008873853.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_7	PF12775.7	gi|564287611|ref|YP_008873853.1|	-	0.13	11.7	0.0	0.32	10.5	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|564287611|ref|YP_008873853.1|	-	0.14	11.8	2.5	1	9.1	2.5	2.1	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564287611|ref|YP_008873853.1|	-	0.17	11.7	0.5	9.2	6.1	0.0	2.4	1	1	1	2	2	2	0	NTPase
DEAD	PF00270.29	gi|564287611|ref|YP_008873853.1|	-	0.2	11.4	0.1	22	4.8	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_25	PF13481.6	gi|564287611|ref|YP_008873853.1|	-	0.71	9.4	4.6	0.57	9.7	0.3	2.7	2	2	1	3	3	3	0	AAA	domain
IucA_IucC	PF04183.12	gi|564287612|ref|YP_008873854.1|	-	2.3e-68	230.3	0.0	3.4e-68	229.8	0.0	1.3	1	0	0	1	1	1	1	IucA	/	IucC	family
FhuF	PF06276.12	gi|564287612|ref|YP_008873854.1|	-	3.4e-34	118.6	0.1	8.7e-34	117.3	0.1	1.8	1	0	0	1	1	1	1	Ferric	iron	reductase	FhuF-like	transporter
Gln-synt_C	PF00120.24	gi|564287613|ref|YP_008873855.1|	-	2.4e-90	303.0	0.0	2.9e-90	302.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N_2	PF16952.5	gi|564287613|ref|YP_008873855.1|	-	1.9e-13	50.2	0.0	4.3e-13	49.0	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
Gln-synt_N	PF03951.19	gi|564287613|ref|YP_008873855.1|	-	0.085	12.6	0.0	0.88	9.3	0.0	2.4	2	0	0	2	2	2	0	Glutamine	synthetase,	beta-Grasp	domain
Aminotran_3	PF00202.21	gi|564287614|ref|YP_008873856.1|	-	5.4e-96	321.7	0.0	6.3e-96	321.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
IucA_IucC	PF04183.12	gi|564287615|ref|YP_008873857.1|	-	4e-58	196.8	0.1	7e-58	196.0	0.1	1.4	1	0	0	1	1	1	1	IucA	/	IucC	family
FhuF	PF06276.12	gi|564287615|ref|YP_008873857.1|	-	8.1e-32	110.9	0.0	1.4e-31	110.1	0.0	1.4	1	0	0	1	1	1	1	Ferric	iron	reductase	FhuF-like	transporter
Peripla_BP_2	PF01497.18	gi|564287616|ref|YP_008873858.1|	-	3e-19	69.5	0.1	7.5e-19	68.2	0.1	1.8	1	1	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|564287616|ref|YP_008873858.1|	-	2.1e-05	24.2	0.4	3.3e-05	23.5	0.4	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pyr_redox_2	PF07992.14	gi|564287617|ref|YP_008873859.1|	-	1.1e-06	28.1	4.1	0.0069	15.6	0.5	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564287617|ref|YP_008873859.1|	-	0.00014	20.7	0.1	0.71	8.5	0.1	3.0	3	0	0	3	3	3	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|564287617|ref|YP_008873859.1|	-	0.00018	20.9	0.3	0.05	12.8	0.1	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564287617|ref|YP_008873859.1|	-	0.00045	20.4	0.2	0.0014	18.8	0.2	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|564287617|ref|YP_008873859.1|	-	0.0014	18.0	6.1	0.0047	16.2	1.9	2.3	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|564287617|ref|YP_008873859.1|	-	0.0016	17.9	0.9	0.0037	16.7	0.9	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564287617|ref|YP_008873859.1|	-	0.087	12.0	1.1	0.18	11.0	0.4	1.8	2	0	0	2	2	2	0	Thi4	family
GIDA	PF01134.22	gi|564287617|ref|YP_008873859.1|	-	0.11	11.5	0.3	0.2	10.7	0.2	1.4	1	1	0	1	1	1	0	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|564287617|ref|YP_008873859.1|	-	0.17	11.0	8.9	0.033	13.3	4.2	2.1	2	1	0	2	2	2	0	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|564287617|ref|YP_008873859.1|	-	0.32	11.0	0.1	0.32	11.0	0.1	2.8	3	1	0	3	3	3	0	FAD-NAD(P)-binding
DAO	PF01266.24	gi|564287617|ref|YP_008873859.1|	-	1.6	8.2	11.1	0.3	10.6	4.5	2.4	1	1	1	2	2	2	0	FAD	dependent	oxidoreductase
zf-TFIIB	PF13453.6	gi|564287619|ref|YP_008873862.1|	-	0.0054	16.0	2.9	0.0054	16.0	2.9	1.9	2	0	0	2	2	2	1	Transcription	factor	zinc-finger
DDE_3	PF13358.6	gi|564287619|ref|YP_008873862.1|	-	0.059	13.1	0.1	0.21	11.3	0.2	1.8	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
DUF1660	PF07874.11	gi|564287619|ref|YP_008873862.1|	-	0.23	12.0	3.0	2.6	8.6	0.4	3.0	2	1	0	2	2	2	0	Prophage	protein	(DUF1660)
DUF2367	PF10164.9	gi|564287619|ref|YP_008873862.1|	-	0.34	11.4	1.2	0.6	10.6	0.2	2.0	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2367)
zinc_ribbon_9	PF14369.6	gi|564287619|ref|YP_008873862.1|	-	0.46	10.8	4.6	5.7	7.3	4.4	2.7	1	1	1	2	2	2	0	zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|564287619|ref|YP_008873862.1|	-	1.2	9.1	4.7	24	5.0	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|564287619|ref|YP_008873862.1|	-	1.4	8.6	7.6	0.73	9.5	0.2	3.1	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|564287621|ref|YP_008873864.1|	-	0.0027	17.2	0.9	0.0088	15.5	0.9	1.9	1	0	0	1	1	1	1	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.12	gi|564287621|ref|YP_008873864.1|	-	0.0036	17.2	0.7	0.0063	16.5	0.7	1.4	1	0	0	1	1	1	1	PhnA	Zinc-Ribbon
DUF2387	PF09526.10	gi|564287621|ref|YP_008873864.1|	-	0.018	15.2	0.3	0.018	15.2	0.3	2.0	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|564287621|ref|YP_008873864.1|	-	0.044	13.8	0.3	0.075	13.0	0.3	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|564287621|ref|YP_008873864.1|	-	0.086	12.9	0.6	9.9	6.3	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-TFIIB	PF13453.6	gi|564287621|ref|YP_008873864.1|	-	0.14	11.5	1.4	0.26	10.6	1.4	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zf-Sec23_Sec24	PF04810.15	gi|564287621|ref|YP_008873864.1|	-	0.18	11.9	0.1	0.3	11.2	0.1	1.3	1	0	0	1	1	1	0	Sec23/Sec24	zinc	finger
zf-NADH-PPase	PF09297.11	gi|564287621|ref|YP_008873864.1|	-	0.46	10.2	2.1	4	7.2	0.0	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
MreB_Mbl	PF06723.13	gi|564287622|ref|YP_008873865.1|	-	1.2e-06	27.6	0.0	0.0048	15.8	0.0	2.2	2	0	0	2	2	2	2	MreB/Mbl	protein
FtsA	PF14450.6	gi|564287622|ref|YP_008873865.1|	-	0.012	16.0	0.0	0.031	14.7	0.0	1.7	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Glyco_transf_52	PF07922.11	gi|564287622|ref|YP_008873865.1|	-	0.17	11.1	0.1	0.27	10.5	0.1	1.2	1	0	0	1	1	1	0	Glycosyltransferase	family	52
Fig1	PF12351.8	gi|564287623|ref|YP_008873866.1|	-	0.85	9.5	3.9	0.61	10.0	2.0	1.6	1	1	1	2	2	2	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
Yip1	PF04893.17	gi|564287623|ref|YP_008873866.1|	-	6.5	6.4	17.9	22	4.7	17.9	1.7	1	1	0	1	1	1	0	Yip1	domain
VirB7	PF17413.2	gi|564287821|ref|YP_008873867.1|	-	0.15	11.4	0.1	0.25	10.7	0.1	1.3	1	0	0	1	1	1	0	Outer	membrane	lipoprotein	virB7
DoxX_3	PF13781.6	gi|564287624|ref|YP_008873868.1|	-	3.3e-05	24.5	3.8	3.3e-05	24.5	3.8	2.1	2	1	1	3	3	3	1	DoxX-like	family
DoxX	PF07681.12	gi|564287624|ref|YP_008873868.1|	-	0.12	12.9	9.3	0.26	11.9	9.2	1.6	1	1	0	1	1	1	0	DoxX
DUF4267	PF14087.6	gi|564287624|ref|YP_008873868.1|	-	0.82	9.8	5.7	1.2	9.2	5.7	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4267)
Peptidase_A24	PF01478.18	gi|564287624|ref|YP_008873868.1|	-	2.1	8.8	7.6	24	5.4	7.6	2.1	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
VIT1	PF01988.19	gi|564287625|ref|YP_008873869.1|	-	1.2e-09	38.3	2.6	1.2e-09	38.3	2.6	2.0	1	1	1	2	2	2	1	VIT	family
ATP-synt_J	PF04911.12	gi|564287625|ref|YP_008873869.1|	-	0.3	10.7	0.4	0.73	9.5	0.4	1.6	1	0	0	1	1	1	0	ATP	synthase	j	chain
GPHR_N	PF12537.8	gi|564287625|ref|YP_008873869.1|	-	5.1	7.2	7.8	1.3e+02	2.8	7.8	2.8	1	1	0	1	1	1	0	The	Golgi	pH	Regulator	(GPHR)	Family	N-terminal
DUF211	PF02680.14	gi|564287626|ref|YP_008873870.1|	-	1.2e-34	118.3	0.3	1.4e-34	118.1	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
HMA	PF00403.26	gi|564287626|ref|YP_008873870.1|	-	0.034	14.6	0.1	0.073	13.5	0.1	1.6	1	0	0	1	1	1	0	Heavy-metal-associated	domain
Usp	PF00582.26	gi|564287627|ref|YP_008873871.1|	-	2.8e-61	206.1	8.5	3.7e-30	105.3	1.7	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
CHB_HEX_C_1	PF13290.6	gi|564287627|ref|YP_008873871.1|	-	0.078	13.0	0.2	0.15	12.1	0.2	1.5	1	0	0	1	1	1	0	Chitobiase/beta-hexosaminidase	C-terminal	domain
FAM25	PF15825.5	gi|564287627|ref|YP_008873871.1|	-	1.4	9.3	7.6	6.3	7.2	0.2	3.3	3	0	0	3	3	3	0	FAM25	family
HTH_32	PF13565.6	gi|564287628|ref|YP_008873872.1|	-	0.046	14.3	1.6	0.48	11.1	0.0	2.6	2	1	0	2	2	2	0	Homeodomain-like	domain
TMEM119	PF15724.5	gi|564287628|ref|YP_008873872.1|	-	0.076	13.1	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	TMEM119	family
DUF2757	PF10955.8	gi|564287628|ref|YP_008873872.1|	-	0.099	12.9	0.1	0.19	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2757)
PyrI_C	PF02748.15	gi|564287630|ref|YP_008873874.1|	-	0.0034	17.2	0.2	0.014	15.3	0.0	1.9	2	0	0	2	2	2	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-ribbon_3	PF13248.6	gi|564287630|ref|YP_008873874.1|	-	0.0099	15.3	0.0	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-FCS	PF06467.14	gi|564287630|ref|YP_008873874.1|	-	0.017	15.1	1.7	0.036	14.0	1.7	1.6	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.10	gi|564287630|ref|YP_008873874.1|	-	0.051	13.9	0.3	0.051	13.9	0.3	1.7	2	0	0	2	2	2	0	Archaeal	TRASH	domain
zf-C6H2	PF15801.5	gi|564287630|ref|YP_008873874.1|	-	0.051	13.9	1.0	0.078	13.3	0.1	1.7	2	0	0	2	2	2	0	zf-MYND-like	zinc	finger,	mRNA-binding
Pyr_redox_2	PF07992.14	gi|564287631|ref|YP_008873876.1|	-	2.7e-66	223.8	1.8	2.7e-66	223.8	1.8	1.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|564287631|ref|YP_008873876.1|	-	6.1e-37	126.3	1.8	1.4e-36	125.1	1.8	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|564287631|ref|YP_008873876.1|	-	1.3e-20	73.8	4.6	1.3e-16	60.9	0.0	3.4	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564287631|ref|YP_008873876.1|	-	8.6e-10	38.3	1.6	0.00034	20.0	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564287631|ref|YP_008873876.1|	-	8.3e-09	35.0	5.0	6.4e-07	28.8	2.6	2.7	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|564287631|ref|YP_008873876.1|	-	2.6e-08	33.4	12.1	4.3e-07	29.4	2.8	4.1	2	1	2	4	4	4	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564287631|ref|YP_008873876.1|	-	3.2e-08	33.7	4.7	0.00014	22.0	1.2	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|564287631|ref|YP_008873876.1|	-	1.9e-07	30.8	1.3	1.9e-07	30.8	1.3	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564287631|ref|YP_008873876.1|	-	2.4e-07	29.8	5.6	5.6e-05	22.0	0.8	3.6	3	1	1	4	4	4	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|564287631|ref|YP_008873876.1|	-	4.2e-07	29.5	8.9	0.00092	18.6	1.0	3.2	2	1	1	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|564287631|ref|YP_008873876.1|	-	2.6e-06	27.2	10.0	0.0099	15.5	1.4	4.1	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564287631|ref|YP_008873876.1|	-	2.9e-05	23.7	1.0	0.0041	16.7	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564287631|ref|YP_008873876.1|	-	7.8e-05	22.1	11.0	0.012	14.9	0.1	2.9	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|564287631|ref|YP_008873876.1|	-	0.00012	21.3	2.9	0.034	13.2	0.6	3.3	3	1	0	3	3	3	1	Lycopene	cyclase	protein
XdhC_C	PF13478.6	gi|564287631|ref|YP_008873876.1|	-	0.00073	20.0	0.3	0.077	13.5	0.1	2.7	2	1	0	2	2	2	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|564287631|ref|YP_008873876.1|	-	0.0012	18.8	5.4	0.015	15.2	0.0	2.8	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|564287631|ref|YP_008873876.1|	-	0.0012	18.1	2.6	0.025	13.8	0.3	2.3	2	0	0	2	2	2	1	Thi4	family
ATPgrasp_N	PF18130.1	gi|564287631|ref|YP_008873876.1|	-	0.0055	17.2	0.9	0.64	10.6	0.1	3.2	3	0	0	3	3	2	1	ATP-grasp	N-terminal	domain
TrkA_N	PF02254.18	gi|564287631|ref|YP_008873876.1|	-	0.013	15.8	2.0	0.033	14.5	0.1	2.4	2	0	0	2	2	2	0	TrkA-N	domain
Trp_halogenase	PF04820.14	gi|564287631|ref|YP_008873876.1|	-	0.022	13.6	1.4	0.095	11.5	0.3	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
2-Hacid_dh_C	PF02826.19	gi|564287631|ref|YP_008873876.1|	-	0.028	13.8	0.2	0.68	9.3	0.0	2.5	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AIRS	PF00586.24	gi|564287631|ref|YP_008873876.1|	-	0.088	13.5	0.3	0.83	10.4	0.0	2.7	2	0	0	2	2	2	0	AIR	synthase	related	protein,	N-terminal	domain
NAD_binding_9	PF13454.6	gi|564287631|ref|YP_008873876.1|	-	0.42	10.6	4.7	2.1	8.4	0.1	3.4	3	1	1	4	4	4	0	FAD-NAD(P)-binding
2-oxoacid_dh	PF00198.23	gi|564287632|ref|YP_008873877.1|	-	1.8e-87	292.6	0.0	2.8e-87	292.0	0.0	1.3	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|564287632|ref|YP_008873877.1|	-	3.6e-23	81.2	0.7	7.3e-23	80.2	0.7	1.6	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|564287632|ref|YP_008873877.1|	-	5.2e-13	49.1	1.1	3.8e-09	36.7	0.5	2.7	2	0	0	2	2	2	2	e3	binding	domain
GCV_H	PF01597.19	gi|564287632|ref|YP_008873877.1|	-	0.00017	21.5	0.1	0.00056	19.8	0.1	1.9	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl_2	PF13533.6	gi|564287632|ref|YP_008873877.1|	-	0.004	16.9	0.6	0.004	16.9	0.6	3.5	3	1	1	4	4	4	1	Biotin-lipoyl	like
HlyD_3	PF13437.6	gi|564287632|ref|YP_008873877.1|	-	0.0055	17.4	4.4	0.071	13.8	0.4	3.3	2	1	1	3	3	3	1	HlyD	family	secretion	protein
Paramyxo_ncap	PF00973.19	gi|564287632|ref|YP_008873877.1|	-	9.5	5.0	8.1	15	4.3	8.1	1.3	1	0	0	1	1	1	0	Paramyxovirus	nucleocapsid	protein
Transket_pyr	PF02779.24	gi|564287633|ref|YP_008873878.1|	-	1.2e-48	165.2	0.0	1.8e-48	164.6	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|564287633|ref|YP_008873878.1|	-	3e-34	117.6	0.0	6.2e-34	116.6	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
E1_dh	PF00676.20	gi|564287634|ref|YP_008873879.1|	-	1.5e-77	260.5	0.0	1.8e-77	260.2	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|564287634|ref|YP_008873879.1|	-	2.8e-06	26.7	0.0	5.1e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|564287634|ref|YP_008873879.1|	-	0.0013	18.6	0.3	0.0078	16.0	0.3	2.1	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Transketolase_N	PF00456.21	gi|564287634|ref|YP_008873879.1|	-	0.0051	15.8	0.0	0.013	14.5	0.0	1.5	1	1	1	2	2	2	1	Transketolase,	thiamine	diphosphate	binding	domain
CAF1-p150_N	PF15557.6	gi|564287634|ref|YP_008873879.1|	-	0.062	13.2	0.4	0.096	12.6	0.4	1.2	1	0	0	1	1	1	0	CAF1	complex	subunit	p150,	region	binding	to	PCNA
ABC_tran	PF00005.27	gi|564287635|ref|YP_008873880.1|	-	1.7e-28	99.9	0.0	2.5e-28	99.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287635|ref|YP_008873880.1|	-	5.1e-12	46.2	0.2	2.4e-05	24.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287635|ref|YP_008873880.1|	-	0.00016	21.2	1.5	0.0036	16.8	0.2	2.3	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564287635|ref|YP_008873880.1|	-	0.0017	18.1	0.1	0.0044	16.7	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564287635|ref|YP_008873880.1|	-	0.0022	18.6	0.2	0.0049	17.4	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|564287635|ref|YP_008873880.1|	-	0.0076	15.9	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564287635|ref|YP_008873880.1|	-	0.0084	16.4	0.4	0.044	14.1	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564287635|ref|YP_008873880.1|	-	0.013	15.2	0.2	0.021	14.6	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564287635|ref|YP_008873880.1|	-	0.014	15.1	0.0	0.19	11.4	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_10	PF12846.7	gi|564287635|ref|YP_008873880.1|	-	0.017	14.1	0.0	0.036	13.0	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|564287635|ref|YP_008873880.1|	-	0.029	14.7	0.1	0.048	14.1	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564287635|ref|YP_008873880.1|	-	0.067	13.3	0.1	0.12	12.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564287635|ref|YP_008873880.1|	-	0.12	12.9	0.2	0.72	10.4	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.6	gi|564287635|ref|YP_008873880.1|	-	0.13	12.7	0.7	2.1	8.8	0.1	2.3	1	1	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|564287635|ref|YP_008873880.1|	-	0.15	11.3	0.3	0.22	10.7	0.3	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Spore_IV_A	PF09547.10	gi|564287635|ref|YP_008873880.1|	-	0.15	10.9	0.1	0.22	10.4	0.1	1.1	1	0	0	1	1	1	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
SbcCD_C	PF13558.6	gi|564287635|ref|YP_008873880.1|	-	0.45	10.8	3.2	6.5	7.1	3.3	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_tran	PF00005.27	gi|564287823|ref|YP_008873881.1|	-	3.8e-30	105.2	0.0	5.6e-30	104.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287823|ref|YP_008873881.1|	-	9e-12	45.4	0.8	3.6e-05	23.7	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|564287823|ref|YP_008873881.1|	-	9.3e-07	28.6	0.0	1.7e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_29	PF13555.6	gi|564287823|ref|YP_008873881.1|	-	1.3e-05	24.8	0.1	3.2e-05	23.6	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|564287823|ref|YP_008873881.1|	-	4.9e-05	22.9	0.6	0.0031	17.0	0.6	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564287823|ref|YP_008873881.1|	-	0.00034	21.2	2.2	0.00057	20.4	1.9	1.7	1	1	0	1	1	1	1	AAA	domain
MukB	PF04310.12	gi|564287823|ref|YP_008873881.1|	-	0.0038	17.1	0.1	0.0089	15.9	0.1	1.6	1	1	0	1	1	1	1	MukB	N-terminal
AAA_27	PF13514.6	gi|564287823|ref|YP_008873881.1|	-	0.091	12.3	0.1	0.2	11.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564287823|ref|YP_008873881.1|	-	0.1	12.5	0.1	0.26	11.2	0.1	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_15	PF13175.6	gi|564287823|ref|YP_008873881.1|	-	0.12	12.0	0.1	0.26	11.0	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
BPD_transp_2	PF02653.16	gi|564287636|ref|YP_008873882.1|	-	1e-38	133.1	30.7	1e-38	133.1	30.7	2.1	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564287637|ref|YP_008873883.1|	-	1.9e-33	115.8	54.5	1.9e-33	115.8	54.5	2.3	2	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Aminotran_1_2	PF00155.21	gi|564287638|ref|YP_008873884.1|	-	2.5e-60	204.6	0.0	2.8e-60	204.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|564287638|ref|YP_008873884.1|	-	1.7e-12	47.3	0.0	2.7e-12	46.7	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|564287638|ref|YP_008873884.1|	-	2.6e-06	26.6	0.0	3.9e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|564287638|ref|YP_008873884.1|	-	1.5e-05	23.7	0.0	2.2e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|564287638|ref|YP_008873884.1|	-	3.7e-05	23.2	0.0	6.3e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Peripla_BP_6	PF13458.6	gi|564287639|ref|YP_008873885.1|	-	6e-34	118.2	1.2	9.1e-34	117.6	1.2	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564287639|ref|YP_008873885.1|	-	4.1e-19	68.9	0.0	1.5e-18	67.0	0.0	1.7	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.9	gi|564287639|ref|YP_008873885.1|	-	0.0063	16.3	1.6	0.0063	16.3	1.6	2.0	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TPP_enzyme_M	PF00205.22	gi|564287640|ref|YP_008873886.1|	-	1.1e-37	128.8	0.8	2.3e-37	127.8	0.1	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_N	PF02776.18	gi|564287640|ref|YP_008873886.1|	-	6.6e-33	113.7	2.6	3.9e-32	111.2	0.0	2.7	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|564287640|ref|YP_008873886.1|	-	7.2e-33	113.5	2.0	1.6e-32	112.4	2.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Epimerase	PF01370.21	gi|564287641|ref|YP_008873887.1|	-	1.6e-41	142.4	0.6	2e-41	142.0	0.6	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564287641|ref|YP_008873887.1|	-	5.5e-37	127.9	0.1	1.5e-36	126.5	0.1	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|564287641|ref|YP_008873887.1|	-	3.2e-19	69.0	0.0	4.5e-19	68.5	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|564287641|ref|YP_008873887.1|	-	1.1e-12	47.7	1.1	1.4e-12	47.4	1.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|564287641|ref|YP_008873887.1|	-	2e-10	40.8	1.3	2.3e-10	40.7	0.2	1.6	2	0	0	2	2	2	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|564287641|ref|YP_008873887.1|	-	3.2e-09	36.3	0.9	2.3e-06	27.0	0.9	2.3	1	1	0	1	1	1	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|564287641|ref|YP_008873887.1|	-	6.5e-09	35.3	0.0	4.3e-08	32.6	0.0	2.0	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|564287641|ref|YP_008873887.1|	-	1.2e-06	28.2	0.3	2e-06	27.4	0.3	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564287641|ref|YP_008873887.1|	-	9.1e-06	25.7	0.5	2.6e-05	24.2	0.5	1.8	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|564287641|ref|YP_008873887.1|	-	0.00031	20.4	0.2	0.00057	19.5	0.2	1.5	1	0	0	1	1	1	1	NmrA-like	family
Peptidase_M24	PF00557.24	gi|564287642|ref|YP_008873888.1|	-	1.3e-26	93.6	0.0	1.8e-26	93.1	0.0	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|564287642|ref|YP_008873888.1|	-	8e-05	23.3	0.0	0.00017	22.2	0.0	1.6	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
RCC1_2	PF13540.6	gi|564287642|ref|YP_008873888.1|	-	0.047	13.5	0.4	0.099	12.5	0.4	1.5	1	0	0	1	1	1	0	Regulator	of	chromosome	condensation	(RCC1)	repeat
Bac_luciferase	PF00296.20	gi|564287643|ref|YP_008873889.1|	-	3.2e-52	177.9	0.2	3.8e-52	177.7	0.2	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
4HBT	PF03061.22	gi|564287644|ref|YP_008873890.1|	-	7.3e-16	58.3	0.6	1.1e-15	57.8	0.6	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|564287644|ref|YP_008873890.1|	-	1.8e-07	31.3	0.0	2.5e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|564287644|ref|YP_008873890.1|	-	0.015	15.5	0.1	0.02	15.2	0.1	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
PS-DH	PF14765.6	gi|564287644|ref|YP_008873890.1|	-	0.029	13.6	0.1	0.029	13.6	0.1	1.2	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
AMP-binding	PF00501.28	gi|564287645|ref|YP_008873891.1|	-	3.5e-75	253.2	0.0	5.3e-75	252.6	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564287645|ref|YP_008873891.1|	-	6.3e-21	75.1	0.2	1.5e-20	73.9	0.2	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|564287645|ref|YP_008873891.1|	-	2.9e-10	39.9	0.1	2.9e-10	39.9	0.1	3.8	5	0	0	5	5	5	1	Acetyl-coenzyme	A	synthetase	N-terminus
F420_oxidored	PF03807.17	gi|564287646|ref|YP_008873892.1|	-	3.8e-18	65.9	0.5	1e-17	64.5	0.1	1.8	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|564287646|ref|YP_008873892.1|	-	0.0014	18.6	1.0	0.0023	17.8	1.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_Gly3P_dh_N	PF01210.23	gi|564287646|ref|YP_008873892.1|	-	0.0015	18.5	0.0	0.0021	18.1	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Semialdhyde_dh	PF01118.24	gi|564287646|ref|YP_008873892.1|	-	0.0028	18.1	0.4	0.011	16.2	0.1	1.8	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
KR	PF08659.10	gi|564287646|ref|YP_008873892.1|	-	0.0084	16.0	0.3	0.017	15.0	0.3	1.4	1	0	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|564287646|ref|YP_008873892.1|	-	0.016	14.7	0.1	0.026	14.1	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
PDH	PF02153.17	gi|564287646|ref|YP_008873892.1|	-	0.018	14.0	0.0	0.03	13.3	0.0	1.3	1	0	0	1	1	1	0	Prephenate	dehydrogenase
3HCDH_N	PF02737.18	gi|564287646|ref|YP_008873892.1|	-	0.095	12.6	0.3	0.31	10.9	0.2	1.9	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|564287646|ref|YP_008873892.1|	-	0.13	12.4	0.1	0.24	11.6	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Aldedh	PF00171.22	gi|564287647|ref|YP_008873893.1|	-	8.8e-138	459.7	0.0	9.9e-138	459.5	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
EthD	PF07110.11	gi|564287648|ref|YP_008873894.1|	-	3e-24	86.0	6.4	5e-11	43.6	0.6	3.5	2	2	0	2	2	2	2	EthD	domain
MmlI	PF09448.10	gi|564287648|ref|YP_008873894.1|	-	1.3e-23	83.6	1.2	1.4e-11	44.9	0.0	3.9	2	2	0	2	2	2	2	Methylmuconolactone	methyl-isomerase
ABM	PF03992.16	gi|564287648|ref|YP_008873894.1|	-	0.0084	16.2	0.0	5.2	7.2	0.0	3.0	2	2	0	2	2	2	2	Antibiotic	biosynthesis	monooxygenase
HD	PF01966.22	gi|564287649|ref|YP_008873895.1|	-	3.6e-10	40.1	0.1	4.9e-10	39.7	0.1	1.1	1	0	0	1	1	1	1	HD	domain
Glu_dehyd_C	PF16912.5	gi|564287650|ref|YP_008873896.1|	-	4.1e-89	297.6	0.0	5.1e-89	297.3	0.0	1.1	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|564287650|ref|YP_008873896.1|	-	6e-11	42.2	0.0	9.4e-11	41.6	0.0	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564287650|ref|YP_008873896.1|	-	1.1e-05	25.4	0.0	1.9e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_2	PF16884.5	gi|564287650|ref|YP_008873896.1|	-	0.0016	18.3	0.0	0.0037	17.1	0.0	1.6	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
Shikimate_DH	PF01488.20	gi|564287650|ref|YP_008873896.1|	-	0.04	14.0	0.0	0.066	13.3	0.0	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
IclR	PF01614.18	gi|564287651|ref|YP_008873897.1|	-	1.9e-26	92.4	0.0	3.6e-26	91.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564287651|ref|YP_008873897.1|	-	2.1e-14	53.1	0.1	2.7e-13	49.5	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564287651|ref|YP_008873897.1|	-	1e-07	31.7	0.0	2.5e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564287651|ref|YP_008873897.1|	-	7.4e-07	29.0	0.0	2.9e-06	27.0	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|564287651|ref|YP_008873897.1|	-	8e-06	25.3	0.0	1.6e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564287651|ref|YP_008873897.1|	-	1.1e-05	25.2	0.0	5e-05	23.1	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|564287651|ref|YP_008873897.1|	-	2.8e-05	24.1	0.0	7.8e-05	22.7	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|564287651|ref|YP_008873897.1|	-	0.00058	19.7	0.0	0.0014	18.5	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|564287651|ref|YP_008873897.1|	-	0.0022	17.9	0.0	0.0041	17.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|564287651|ref|YP_008873897.1|	-	0.0083	16.4	0.0	0.022	15.1	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|564287651|ref|YP_008873897.1|	-	0.025	14.6	0.0	0.19	11.7	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_22	PF13309.6	gi|564287651|ref|YP_008873897.1|	-	0.06	13.4	0.0	0.17	12.0	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
HTH_DeoR	PF08220.12	gi|564287651|ref|YP_008873897.1|	-	0.07	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|564287651|ref|YP_008873897.1|	-	0.11	13.0	0.0	0.23	12.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4399	PF14347.6	gi|564287651|ref|YP_008873897.1|	-	0.13	12.7	0.1	0.27	11.6	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4399)
HTH_23	PF13384.6	gi|564287651|ref|YP_008873897.1|	-	0.13	12.1	0.0	0.36	10.7	0.0	1.7	2	0	0	2	2	1	0	Homeodomain-like	domain
HTH_28	PF13518.6	gi|564287651|ref|YP_008873897.1|	-	0.13	12.4	0.0	0.31	11.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MR_MLE_C	PF13378.6	gi|564287652|ref|YP_008873898.1|	-	4.5e-57	193.1	0.1	6.2e-57	192.7	0.1	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564287652|ref|YP_008873898.1|	-	5.9e-26	91.0	0.0	1.8e-25	89.4	0.0	1.8	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
PEP_mutase	PF13714.6	gi|564287652|ref|YP_008873898.1|	-	0.04	13.4	0.1	0.07	12.6	0.1	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
SIS	PF01380.22	gi|564287824|ref|YP_008873899.1|	-	4e-27	94.7	0.5	6.7e-19	68.0	0.2	2.1	2	0	0	2	2	2	2	SIS	domain
SIS_2	PF13580.6	gi|564287824|ref|YP_008873899.1|	-	8.7e-06	25.8	2.2	0.00077	19.5	0.0	2.7	3	1	0	3	3	3	2	SIS	domain
SBP_bac_8	PF13416.6	gi|564287653|ref|YP_008873900.1|	-	2.1e-27	96.7	4.2	2.1e-27	96.7	4.2	1.7	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564287653|ref|YP_008873900.1|	-	6.7e-19	69.0	6.2	6.7e-19	69.0	6.2	1.6	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|564287653|ref|YP_008873900.1|	-	4.5e-05	23.0	0.4	0.0032	16.9	0.0	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564287653|ref|YP_008873900.1|	-	0.013	15.4	1.9	0.022	14.6	1.9	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|564287654|ref|YP_008873901.1|	-	1.9e-21	76.6	14.1	1.9e-21	76.6	14.1	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1761	PF08570.10	gi|564287654|ref|YP_008873901.1|	-	0.044	14.0	0.9	0.044	14.0	0.9	3.3	3	2	1	4	4	4	0	Protein	of	unknown	function	(DUF1761)
BPD_transp_1	PF00528.22	gi|564287655|ref|YP_008873902.1|	-	2.1e-19	70.0	14.2	2.1e-19	70.0	14.2	2.1	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Glyco_hydro_3	PF00933.21	gi|564287656|ref|YP_008873903.1|	-	1.8e-100	336.4	0.0	2.3e-100	336.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|564287656|ref|YP_008873903.1|	-	0.00035	20.6	0.2	0.00083	19.4	0.1	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
PIG-L	PF02585.17	gi|564287657|ref|YP_008873904.1|	-	8.8e-33	113.7	0.4	1.3e-32	113.1	0.4	1.3	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
Glyco_transf_4	PF13439.6	gi|564287657|ref|YP_008873904.1|	-	0.092	12.7	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
SelA	PF03841.13	gi|564287658|ref|YP_008873905.1|	-	1.4e-08	34.2	4.0	6.2e-07	28.7	1.1	3.6	2	1	0	2	2	2	1	L-seryl-tRNA	selenium	transferase
Aminotran_5	PF00266.19	gi|564287658|ref|YP_008873905.1|	-	2.1e-08	33.5	0.0	4e-08	32.6	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|564287658|ref|YP_008873905.1|	-	3.5e-06	26.6	0.3	7.5e-06	25.5	0.1	1.6	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|564287658|ref|YP_008873905.1|	-	6.5e-06	24.9	0.0	1e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|564287658|ref|YP_008873905.1|	-	5.4e-05	22.6	0.0	0.00012	21.5	0.0	1.6	2	0	0	2	2	2	1	Beta-eliminating	lyase
SepSecS	PF05889.13	gi|564287658|ref|YP_008873905.1|	-	0.00037	19.3	0.0	0.00049	18.9	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
NAD_binding_3	PF03447.16	gi|564287658|ref|YP_008873905.1|	-	0.012	16.3	0.4	0.42	11.3	0.0	2.5	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
ABC_tran	PF00005.27	gi|564287659|ref|YP_008873906.1|	-	1.1e-30	106.9	0.0	1.8e-30	106.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|564287659|ref|YP_008873906.1|	-	9.5e-14	52.0	0.0	7.2e-12	46.0	0.0	2.9	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|564287659|ref|YP_008873906.1|	-	2e-13	50.3	0.4	5.5e-13	48.9	0.4	1.8	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|564287659|ref|YP_008873906.1|	-	5.6e-08	33.0	0.0	0.00081	19.3	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|564287659|ref|YP_008873906.1|	-	1.5e-06	28.6	2.0	4.8e-06	27.0	0.0	2.8	4	0	0	4	4	2	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|564287659|ref|YP_008873906.1|	-	4.9e-05	22.9	0.3	0.00025	20.6	0.3	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564287659|ref|YP_008873906.1|	-	0.00048	20.4	0.7	0.0022	18.3	0.7	2.0	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564287659|ref|YP_008873906.1|	-	0.001	19.0	0.0	0.0018	18.2	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
TOBE	PF03459.17	gi|564287659|ref|YP_008873906.1|	-	0.0019	18.5	0.3	0.0046	17.2	0.3	1.8	1	0	0	1	1	1	1	TOBE	domain
RsgA_GTPase	PF03193.16	gi|564287659|ref|YP_008873906.1|	-	0.0026	17.7	0.0	0.0053	16.7	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|564287659|ref|YP_008873906.1|	-	0.0036	17.7	0.1	0.0061	17.0	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|564287659|ref|YP_008873906.1|	-	0.02	14.5	0.1	0.39	10.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|564287659|ref|YP_008873906.1|	-	0.023	14.1	0.1	2.2	7.7	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
AAA_30	PF13604.6	gi|564287659|ref|YP_008873906.1|	-	0.024	14.4	0.0	0.042	13.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|564287659|ref|YP_008873906.1|	-	0.034	13.9	0.0	0.076	12.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|564287659|ref|YP_008873906.1|	-	0.035	14.5	0.1	0.15	12.5	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT_C	PF16565.5	gi|564287659|ref|YP_008873906.1|	-	0.049	13.6	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Phospholipase	D-like	domain	at	C-terminus	of	MIT
AAA_15	PF13175.6	gi|564287659|ref|YP_008873906.1|	-	0.057	13.1	0.0	1.4	8.6	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.18	gi|564287659|ref|YP_008873906.1|	-	0.073	12.4	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_33	PF13671.6	gi|564287659|ref|YP_008873906.1|	-	0.12	12.5	1.4	0.31	11.2	1.4	1.9	1	1	0	1	1	1	0	AAA	domain
Hexapep_2	PF14602.6	gi|564287659|ref|YP_008873906.1|	-	0.5	10.2	3.0	6.5	6.6	0.2	2.9	3	0	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
IclR	PF01614.18	gi|564287660|ref|YP_008873907.1|	-	3e-17	62.7	0.0	9.4e-17	61.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564287660|ref|YP_008873907.1|	-	9.1e-15	54.2	0.6	6.1e-14	51.5	0.2	2.5	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564287660|ref|YP_008873907.1|	-	1.2e-06	28.3	0.1	2.4e-06	27.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564287660|ref|YP_008873907.1|	-	3.4e-06	26.5	0.0	9.6e-06	25.1	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|564287660|ref|YP_008873907.1|	-	3.5e-06	27.0	0.1	1.8e-05	24.7	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287660|ref|YP_008873907.1|	-	6.9e-05	22.7	0.1	0.00014	21.7	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564287660|ref|YP_008873907.1|	-	0.00063	19.6	0.1	0.0013	18.6	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|564287660|ref|YP_008873907.1|	-	0.00067	19.5	0.1	0.0012	18.7	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|564287660|ref|YP_008873907.1|	-	0.0029	17.8	0.1	0.006	16.8	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|564287660|ref|YP_008873907.1|	-	0.0042	17.0	0.0	0.0082	16.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|564287660|ref|YP_008873907.1|	-	0.0061	16.9	0.0	0.012	15.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
DUF742	PF05331.11	gi|564287660|ref|YP_008873907.1|	-	0.0072	16.1	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
RPA_C	PF08784.11	gi|564287660|ref|YP_008873907.1|	-	0.014	16.0	0.0	0.03	15.0	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_34	PF13601.6	gi|564287660|ref|YP_008873907.1|	-	0.017	15.3	0.1	0.037	14.2	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|564287660|ref|YP_008873907.1|	-	0.023	14.5	0.0	0.061	13.1	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_9	PF08221.11	gi|564287660|ref|YP_008873907.1|	-	0.027	14.6	0.1	0.082	13.0	0.1	1.8	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564287660|ref|YP_008873907.1|	-	0.057	13.3	0.0	0.16	11.8	0.0	1.9	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
GntR	PF00392.21	gi|564287660|ref|YP_008873907.1|	-	0.064	12.9	0.4	0.18	11.5	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_45	PF14947.6	gi|564287660|ref|YP_008873907.1|	-	0.099	12.6	0.0	0.23	11.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
ABC_tran	PF00005.27	gi|564287661|ref|YP_008873908.1|	-	2.7e-32	112.2	0.0	4e-32	111.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287661|ref|YP_008873908.1|	-	3e-09	37.1	3.2	0.00018	21.5	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564287661|ref|YP_008873908.1|	-	0.0056	16.4	0.1	0.01	15.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
BCA_ABC_TP_C	PF12399.8	gi|564287661|ref|YP_008873908.1|	-	0.0056	16.6	0.1	0.012	15.5	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_22	PF13401.6	gi|564287661|ref|YP_008873908.1|	-	0.013	15.8	0.7	0.13	12.6	0.7	2.0	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|564287661|ref|YP_008873908.1|	-	0.014	14.6	0.2	0.024	13.8	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_16	PF13191.6	gi|564287661|ref|YP_008873908.1|	-	0.016	15.6	0.2	0.027	14.9	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|564287661|ref|YP_008873908.1|	-	0.022	14.4	0.1	0.099	12.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|564287661|ref|YP_008873908.1|	-	0.038	13.7	0.6	0.1	12.3	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564287661|ref|YP_008873908.1|	-	0.043	13.9	0.5	0.087	12.9	0.5	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.12	gi|564287661|ref|YP_008873908.1|	-	0.047	13.0	0.0	0.092	12.0	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|564287661|ref|YP_008873908.1|	-	0.052	14.0	0.0	0.097	13.1	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|564287661|ref|YP_008873908.1|	-	0.074	12.5	0.2	4.8	6.5	0.2	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|564287661|ref|YP_008873908.1|	-	0.074	12.7	0.2	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_15	PF13175.6	gi|564287661|ref|YP_008873908.1|	-	0.076	12.7	0.2	0.15	11.7	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
Sigma70_r1_1	PF03979.14	gi|564287661|ref|YP_008873908.1|	-	0.11	12.5	0.3	0.27	11.3	0.1	1.7	2	0	0	2	2	1	0	Sigma-70	factor,	region	1.1
NACHT	PF05729.12	gi|564287661|ref|YP_008873908.1|	-	0.11	12.4	0.1	0.21	11.5	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|564287661|ref|YP_008873908.1|	-	0.21	11.5	2.3	0.15	12.0	0.7	1.5	2	0	0	2	2	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|564287661|ref|YP_008873908.1|	-	0.26	11.8	0.3	0.47	10.9	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|564287662|ref|YP_008873909.1|	-	4.4e-26	92.0	0.0	6e-26	91.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.8	gi|564287662|ref|YP_008873909.1|	-	1.2e-09	37.8	0.1	2.7e-09	36.7	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.6	gi|564287662|ref|YP_008873909.1|	-	0.00016	22.3	0.0	0.00018	22.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564287662|ref|YP_008873909.1|	-	0.0021	17.8	0.3	0.0035	17.1	0.3	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|564287662|ref|YP_008873909.1|	-	0.0022	17.9	1.6	0.034	14.0	0.5	2.2	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287662|ref|YP_008873909.1|	-	0.0031	17.0	0.0	0.0045	16.4	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|564287662|ref|YP_008873909.1|	-	0.0036	16.9	0.1	0.0081	15.8	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|564287662|ref|YP_008873909.1|	-	0.017	14.4	0.0	0.03	13.6	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.6	gi|564287662|ref|YP_008873909.1|	-	0.039	14.3	0.2	0.084	13.3	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287662|ref|YP_008873909.1|	-	0.063	13.0	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|564287662|ref|YP_008873909.1|	-	0.065	13.7	0.3	0.17	12.3	0.1	1.8	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
BPD_transp_2	PF02653.16	gi|564287663|ref|YP_008873910.1|	-	1e-83	280.6	79.1	8.7e-48	162.8	37.1	2.1	2	0	0	2	2	2	2	Branched-chain	amino	acid	transport	system	/	permease	component
Coa1	PF08695.10	gi|564287663|ref|YP_008873910.1|	-	0.062	13.0	0.3	0.6	9.9	0.0	2.7	3	0	0	3	3	3	0	Cytochrome	oxidase	complex	assembly	protein	1
Peripla_BP_6	PF13458.6	gi|564287664|ref|YP_008873911.1|	-	4.5e-60	204.1	11.9	5.5e-60	203.8	11.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564287664|ref|YP_008873911.1|	-	1.9e-27	96.2	0.3	2.3e-27	96.0	0.3	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564287664|ref|YP_008873911.1|	-	2.1e-10	40.2	0.1	4.2e-10	39.2	0.1	1.4	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.9	gi|564287664|ref|YP_008873911.1|	-	0.0012	18.6	3.7	0.0036	17.1	3.7	1.9	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|564287664|ref|YP_008873911.1|	-	0.025	13.9	0.5	0.071	12.5	0.5	1.8	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Penicil_amidase	PF01804.18	gi|564287825|ref|YP_008873912.1|	-	1e-117	394.9	13.1	1e-117	394.9	13.1	1.3	2	0	0	2	2	2	1	Penicillin	amidase
TAT_signal	PF10518.9	gi|564287825|ref|YP_008873912.1|	-	0.00059	19.6	0.1	0.00059	19.6	0.1	3.2	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyoxalase_4	PF13669.6	gi|564287665|ref|YP_008873913.1|	-	3.3e-15	56.3	0.0	4.3e-15	55.9	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|564287665|ref|YP_008873913.1|	-	1.9e-05	24.8	0.1	4.9e-05	23.5	0.1	1.6	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.25	gi|564287665|ref|YP_008873913.1|	-	8.1e-05	22.8	0.0	9.9e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
MmlI	PF09448.10	gi|564287666|ref|YP_008873914.1|	-	2.4e-15	57.0	0.2	4.3e-14	52.9	0.2	2.0	1	1	0	1	1	1	1	Methylmuconolactone	methyl-isomerase
EthD	PF07110.11	gi|564287666|ref|YP_008873914.1|	-	1.8e-14	54.7	3.9	6e-14	53.0	3.9	1.7	1	1	0	1	1	1	1	EthD	domain
Dabb	PF07876.12	gi|564287666|ref|YP_008873914.1|	-	0.084	13.5	0.0	0.097	13.3	0.0	1.2	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
IclR	PF01614.18	gi|574087271|ref|YP_008873915.2|	-	1.5e-28	99.2	0.0	3.6e-28	98.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|574087271|ref|YP_008873915.2|	-	5.4e-11	42.1	0.2	1.2e-10	41.0	0.1	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|574087271|ref|YP_008873915.2|	-	4.4e-05	23.1	0.1	0.00011	21.9	0.1	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|574087271|ref|YP_008873915.2|	-	0.00054	19.8	0.1	0.0011	18.7	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|574087271|ref|YP_008873915.2|	-	0.0036	17.3	0.1	0.016	15.3	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|574087271|ref|YP_008873915.2|	-	0.0049	16.8	0.1	0.019	14.9	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|574087271|ref|YP_008873915.2|	-	0.0098	15.8	0.1	0.025	14.5	0.1	1.7	1	0	0	1	1	1	1	MarR	family
SpoIIID	PF12116.8	gi|574087271|ref|YP_008873915.2|	-	0.015	15.3	0.3	0.038	14.1	0.3	1.7	1	1	0	1	1	1	0	Stage	III	sporulation	protein	D
MarR_2	PF12802.7	gi|574087271|ref|YP_008873915.2|	-	0.017	15.0	0.0	0.065	13.1	0.0	2.0	2	0	0	2	2	2	0	MarR	family
DUF1803	PF08820.10	gi|574087271|ref|YP_008873915.2|	-	0.018	15.1	0.2	0.038	14.0	0.1	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1803)
HTH_45	PF14947.6	gi|574087271|ref|YP_008873915.2|	-	0.023	14.7	0.1	0.039	13.9	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|574087271|ref|YP_008873915.2|	-	0.04	13.5	0.0	0.091	12.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
ECH_1	PF00378.20	gi|564287668|ref|YP_008873916.1|	-	9.9e-68	228.2	0.0	1.1e-67	228.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564287668|ref|YP_008873916.1|	-	4.7e-37	128.2	0.0	5.6e-30	105.0	0.0	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
3HCDH_N	PF02737.18	gi|564287669|ref|YP_008873917.1|	-	2.1e-63	213.4	4.3	2.9e-63	213.0	4.3	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|564287669|ref|YP_008873917.1|	-	1.3e-31	109.1	0.1	6.4e-31	106.8	0.0	2.1	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564287669|ref|YP_008873917.1|	-	4.7e-06	26.7	0.3	1.1e-05	25.5	0.3	1.6	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.14	gi|564287669|ref|YP_008873917.1|	-	1.2e-05	24.9	0.3	2e-05	24.2	0.3	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|564287669|ref|YP_008873917.1|	-	0.00035	20.8	2.2	0.00035	20.8	2.2	2.1	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|564287669|ref|YP_008873917.1|	-	0.013	15.7	1.0	0.043	14.1	1.0	1.9	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|564287669|ref|YP_008873917.1|	-	0.027	15.0	6.4	0.066	13.8	3.4	2.5	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
MORN	PF02493.20	gi|564287669|ref|YP_008873917.1|	-	0.045	13.6	0.1	0.1	12.5	0.1	1.6	1	0	0	1	1	1	0	MORN	repeat
ApbA	PF02558.16	gi|564287669|ref|YP_008873917.1|	-	0.09	12.4	0.1	0.14	11.8	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NmrA	PF05368.13	gi|564287669|ref|YP_008873917.1|	-	0.16	11.5	0.5	0.25	10.9	0.5	1.3	1	0	0	1	1	1	0	NmrA-like	family
Thiolase_N	PF00108.23	gi|564287670|ref|YP_008873918.1|	-	3.7e-59	200.2	0.6	2.6e-58	197.4	0.6	1.9	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564287670|ref|YP_008873918.1|	-	3.4e-47	159.1	0.1	6.6e-47	158.2	0.1	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III_C	PF08541.10	gi|564287670|ref|YP_008873918.1|	-	0.0058	16.8	0.0	0.013	15.6	0.0	1.6	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF35_N	PF12172.8	gi|564287671|ref|YP_008873919.1|	-	1e-10	41.2	2.9	6e-10	38.8	3.8	1.9	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|564287671|ref|YP_008873919.1|	-	0.005	16.8	1.2	0.023	14.7	1.2	2.2	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
ACP_syn_III_C	PF08541.10	gi|564287671|ref|YP_008873919.1|	-	0.1	12.8	0.2	0.23	11.6	0.2	1.6	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Rubredoxin_2	PF18073.1	gi|564287671|ref|YP_008873919.1|	-	0.88	9.3	2.3	1.7	8.4	2.3	1.5	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
Thiolase_N	PF00108.23	gi|564287672|ref|YP_008873920.1|	-	8.5e-25	87.6	0.9	2.7e-24	85.9	0.9	1.8	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564287672|ref|YP_008873920.1|	-	5.9e-10	38.9	0.4	1.6e-09	37.5	0.1	1.9	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564287672|ref|YP_008873920.1|	-	8.4e-09	35.4	2.3	1.8e-08	34.3	2.3	1.5	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|564287672|ref|YP_008873920.1|	-	0.0059	16.4	1.0	0.071	13.0	0.3	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
AMP-binding_C_2	PF14535.6	gi|564287673|ref|YP_008873921.1|	-	2.9e-20	72.4	0.0	5.7e-20	71.4	0.0	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|564287673|ref|YP_008873921.1|	-	2.7e-14	52.6	0.2	8.3e-14	51.0	0.2	1.9	1	1	0	1	1	1	1	AMP-binding	enzyme
LuxE	PF04443.12	gi|564287673|ref|YP_008873921.1|	-	0.0019	17.3	0.0	0.024	13.7	0.0	2.0	2	0	0	2	2	2	1	Acyl-protein	synthetase,	LuxE
GH3	PF03321.13	gi|564287673|ref|YP_008873921.1|	-	0.0031	16.4	0.0	0.018	13.9	0.0	1.9	2	0	0	2	2	2	1	GH3	auxin-responsive	promoter
4HBT	PF03061.22	gi|564287674|ref|YP_008873922.1|	-	8.7e-14	51.6	0.6	1.5e-13	50.9	0.6	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|564287674|ref|YP_008873922.1|	-	1.2e-09	38.4	0.1	1.5e-09	38.0	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|564287674|ref|YP_008873922.1|	-	0.0071	16.6	0.2	0.0085	16.4	0.2	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
PS-DH	PF14765.6	gi|564287674|ref|YP_008873922.1|	-	0.035	13.4	0.0	0.04	13.2	0.0	1.2	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
MaoC_dehydratas	PF01575.19	gi|564287674|ref|YP_008873922.1|	-	0.078	12.5	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	MaoC	like	domain
MaoC_dehydratas	PF01575.19	gi|564287675|ref|YP_008873923.1|	-	6.3e-18	64.5	0.1	7.8e-18	64.2	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564287675|ref|YP_008873923.1|	-	0.00024	21.2	0.5	0.00093	19.3	0.5	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Aldedh	PF00171.22	gi|564287676|ref|YP_008873924.1|	-	3.9e-171	569.6	2.6	4.4e-171	569.5	2.6	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
TF_Zn_Ribbon	PF08271.12	gi|564287677|ref|YP_008873925.1|	-	0.0043	16.5	0.7	0.0043	16.5	0.7	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.6	gi|564287677|ref|YP_008873925.1|	-	0.016	15.6	3.8	0.017	15.5	3.8	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_9	PF14369.6	gi|564287677|ref|YP_008873925.1|	-	0.051	13.8	3.9	0.52	10.6	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon
zf-ISL3	PF14690.6	gi|564287677|ref|YP_008873925.1|	-	0.056	14.1	5.6	0.086	13.5	5.5	1.4	1	1	0	1	1	1	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-H2C2_2	PF13465.6	gi|564287677|ref|YP_008873925.1|	-	0.091	13.2	5.5	4.3	7.9	2.0	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.10	gi|564287677|ref|YP_008873925.1|	-	0.11	12.7	0.2	0.11	12.7	0.2	2.3	2	1	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564287677|ref|YP_008873925.1|	-	0.24	11.4	6.4	0.37	10.8	6.4	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PSI_integrin	PF17205.3	gi|564287677|ref|YP_008873925.1|	-	0.29	10.9	6.4	2.5	7.9	1.2	2.1	1	1	1	2	2	2	0	Integrin	plexin	domain
FeS_assembly_P	PF01883.19	gi|564287678|ref|YP_008873926.1|	-	3.7e-23	81.5	0.2	5.7e-23	80.9	0.2	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
PaaA_PaaC	PF05138.12	gi|564287679|ref|YP_008873927.1|	-	6.2e-58	196.0	2.0	8.2e-58	195.6	2.0	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
MiaE_2	PF13794.6	gi|564287679|ref|YP_008873927.1|	-	0.004	16.9	0.6	0.012	15.4	0.6	1.8	1	1	0	1	1	1	1	tRNA-(MS[2]IO[6]A)-hydroxylase	(MiaE)-like
GSP_synth	PF03738.14	gi|564287679|ref|YP_008873927.1|	-	0.017	14.3	0.4	0.41	9.7	0.1	2.1	1	1	1	2	2	2	0	Glutathionylspermidine	synthase	preATP-grasp
DUF1799	PF08809.11	gi|564287679|ref|YP_008873927.1|	-	0.065	13.4	0.0	0.23	11.6	0.0	1.9	1	0	0	1	1	1	0	Phage	related	hypothetical	protein	(DUF1799)
PaaB	PF06243.11	gi|564287680|ref|YP_008873928.1|	-	4.2e-24	84.6	0.2	3e-12	46.6	0.1	2.1	2	0	0	2	2	2	2	Phenylacetic	acid	degradation	B
PaaA_PaaC	PF05138.12	gi|564287681|ref|YP_008873929.1|	-	4.5e-73	245.6	0.1	5.6e-73	245.3	0.1	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
HTH_10	PF04967.12	gi|564287682|ref|YP_008873930.1|	-	2.5e-17	62.4	0.1	4.2e-17	61.7	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564287682|ref|YP_008873930.1|	-	7.3e-05	22.7	0.0	0.00012	21.9	0.0	1.4	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564287682|ref|YP_008873930.1|	-	0.02	14.8	0.1	0.077	12.9	0.1	2.1	2	1	0	2	2	2	0	MarR	family
HTH_24	PF13412.6	gi|564287682|ref|YP_008873930.1|	-	0.18	11.4	0.0	0.48	10.0	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
SpoIIID	PF12116.8	gi|564287682|ref|YP_008873930.1|	-	0.18	11.9	0.0	0.36	11.0	0.0	1.4	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
ECH_1	PF00378.20	gi|564287683|ref|YP_008873931.1|	-	3.2e-50	170.8	0.1	3.8e-50	170.5	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564287683|ref|YP_008873931.1|	-	1.8e-27	96.7	0.1	2.4e-27	96.3	0.1	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
Amidohydro_2	PF04909.14	gi|564287684|ref|YP_008873932.1|	-	5e-45	154.5	1.5	6.6e-45	154.1	1.5	1.2	1	0	0	1	1	1	1	Amidohydrolase
TatD_DNase	PF01026.21	gi|564287684|ref|YP_008873932.1|	-	0.0051	16.2	0.0	0.064	12.6	0.0	2.1	1	1	0	1	1	1	1	TatD	related	DNase
HpcH_HpaI	PF03328.14	gi|564287685|ref|YP_008873933.1|	-	4.9e-56	189.3	2.8	6.8e-56	188.9	2.8	1.2	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|564287685|ref|YP_008873933.1|	-	3.8e-14	52.6	0.0	5.9e-08	32.2	0.0	2.1	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
Methyltransf_11	PF08241.12	gi|564287686|ref|YP_008873934.1|	-	1.3e-16	61.0	0.0	2.5e-16	60.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564287686|ref|YP_008873934.1|	-	2.9e-13	50.3	0.0	6.3e-13	49.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564287686|ref|YP_008873934.1|	-	3.6e-08	33.4	0.0	6e-08	32.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564287686|ref|YP_008873934.1|	-	3.5e-07	30.2	0.0	4.2e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564287686|ref|YP_008873934.1|	-	1.7e-06	28.7	0.0	3.1e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564287686|ref|YP_008873934.1|	-	1.3e-05	24.7	0.0	2.6e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|564287686|ref|YP_008873934.1|	-	0.00016	21.6	0.0	0.00022	21.1	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
MTS	PF05175.14	gi|564287686|ref|YP_008873934.1|	-	0.22	11.1	0.2	1.1	8.8	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	small	domain
MaoC_dehydratas	PF01575.19	gi|564287687|ref|YP_008873935.1|	-	3.9e-26	91.0	0.2	4.8e-26	90.7	0.2	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564287687|ref|YP_008873935.1|	-	0.0022	18.2	0.4	0.0072	16.5	0.4	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Carboxyl_trans	PF01039.22	gi|564287688|ref|YP_008873936.1|	-	1.9e-129	432.5	0.0	2.4e-129	432.2	0.0	1.1	1	0	0	1	1	1	1	Carboxyl	transferase	domain
CPSase_L_D2	PF02786.17	gi|564287689|ref|YP_008873937.1|	-	1.4e-75	253.4	0.2	1.4e-75	253.4	0.2	1.9	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|564287689|ref|YP_008873937.1|	-	9.8e-44	148.4	0.1	1.9e-43	147.5	0.1	1.5	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|564287689|ref|YP_008873937.1|	-	6.3e-37	126.0	0.0	1.3e-36	124.9	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.22	gi|564287689|ref|YP_008873937.1|	-	3.1e-16	59.0	3.6	1.1e-15	57.3	3.1	2.2	2	0	0	2	2	2	1	Biotin-requiring	enzyme
ATP-grasp	PF02222.22	gi|564287689|ref|YP_008873937.1|	-	7.4e-10	38.7	0.2	1.5e-09	37.6	0.2	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|564287689|ref|YP_008873937.1|	-	2.3e-09	37.1	0.0	4.4e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
GARS_A	PF01071.19	gi|564287689|ref|YP_008873937.1|	-	2.2e-05	24.3	0.1	4.9e-05	23.2	0.1	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Biotin_lipoyl_2	PF13533.6	gi|564287689|ref|YP_008873937.1|	-	4.5e-05	23.2	1.5	0.0079	16.0	0.1	3.0	2	1	1	3	3	3	1	Biotin-lipoyl	like
ATP-grasp_3	PF02655.14	gi|564287689|ref|YP_008873937.1|	-	0.00054	20.0	0.0	0.00087	19.4	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|564287689|ref|YP_008873937.1|	-	0.0059	16.3	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
HlyD_D23	PF16576.5	gi|564287689|ref|YP_008873937.1|	-	0.03	13.5	0.7	3.4	6.8	0.1	2.4	1	1	1	2	2	2	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
ATP-grasp_5	PF13549.6	gi|564287689|ref|YP_008873937.1|	-	0.054	12.9	0.0	0.094	12.2	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
HlyD_3	PF13437.6	gi|564287689|ref|YP_008873937.1|	-	0.083	13.6	0.6	8.1	7.2	0.2	3.1	2	0	0	2	2	2	0	HlyD	family	secretion	protein
RnfC_N	PF13375.6	gi|564287689|ref|YP_008873937.1|	-	0.22	11.5	1.0	0.89	9.6	0.4	2.4	3	0	0	3	3	3	0	RnfC	Barrel	sandwich	hybrid	domain
Acyl-CoA_dh_1	PF00441.24	gi|564287690|ref|YP_008873938.1|	-	3.5e-29	101.9	0.6	5.4e-29	101.3	0.6	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564287690|ref|YP_008873938.1|	-	1.6e-23	82.7	0.0	3.7e-23	81.5	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|564287690|ref|YP_008873938.1|	-	4.5e-23	82.1	2.1	8.4e-23	81.2	2.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|564287690|ref|YP_008873938.1|	-	2e-16	60.5	0.5	3.5e-16	59.7	0.5	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.28	gi|564287691|ref|YP_008873939.1|	-	1e-85	287.9	0.0	1.3e-85	287.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564287691|ref|YP_008873939.1|	-	3.7e-20	72.7	1.2	3.7e-20	72.7	1.2	1.8	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
UbiD	PF01977.16	gi|564287692|ref|YP_008873940.1|	-	7.8e-27	94.2	0.0	1.1e-26	93.6	0.0	1.1	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
UbiD	PF01977.16	gi|564287693|ref|YP_008873941.1|	-	2.9e-102	342.6	0.0	4e-102	342.1	0.0	1.1	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
Peptidase_M41	PF01434.18	gi|564287694|ref|YP_008873942.1|	-	0.12	12.2	0.8	0.19	11.5	0.1	1.6	2	0	0	2	2	2	0	Peptidase	family	M41
ABC1	PF03109.16	gi|564287695|ref|YP_008873943.1|	-	4.7e-20	71.9	0.0	9e-20	71.0	0.0	1.5	1	0	0	1	1	1	1	ABC1	family
APH	PF01636.23	gi|564287695|ref|YP_008873943.1|	-	0.074	13.0	7.5	0.045	13.7	1.7	3.1	2	1	2	4	4	4	0	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|564287695|ref|YP_008873943.1|	-	0.15	11.4	0.0	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	kinase	domain
Ion_trans_N	PF08412.10	gi|564287695|ref|YP_008873943.1|	-	0.21	11.2	0.0	0.6	9.8	0.1	1.7	2	0	0	2	2	2	0	Ion	transport	protein	N-terminal
DUF4010	PF13194.6	gi|564287696|ref|YP_008873944.1|	-	1e-69	234.4	15.8	1e-69	234.4	15.8	3.1	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|564287696|ref|YP_008873944.1|	-	2.1e-10	41.0	12.1	2.1e-10	41.0	12.1	3.5	3	2	0	3	3	3	1	MgtC	family
PhoLip_ATPase_C	PF16212.5	gi|564287696|ref|YP_008873944.1|	-	1.7	8.3	6.7	0.69	9.6	0.2	2.3	1	1	1	2	2	2	0	Phospholipid-translocating	P-type	ATPase	C-terminal
E1-E2_ATPase	PF00122.20	gi|564287697|ref|YP_008873945.1|	-	5.1e-57	192.3	1.5	1.1e-56	191.2	1.5	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564287697|ref|YP_008873945.1|	-	3e-39	135.5	13.5	6.1e-39	134.5	11.2	2.5	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564287697|ref|YP_008873945.1|	-	1.5e-15	57.3	1.0	2.2e-14	53.6	0.1	3.0	3	0	0	3	3	3	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564287697|ref|YP_008873945.1|	-	0.0014	18.4	1.0	0.02	14.7	0.7	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564287697|ref|YP_008873945.1|	-	0.0034	17.8	0.4	0.018	15.5	0.4	2.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HTH_10	PF04967.12	gi|564287698|ref|YP_008873946.1|	-	2.4e-16	59.2	0.3	8.4e-16	57.5	0.1	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|564287698|ref|YP_008873946.1|	-	3.5e-05	23.5	0.2	0.00025	20.8	0.1	2.4	2	0	0	2	2	2	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287698|ref|YP_008873946.1|	-	7.8e-05	22.5	0.2	0.00032	20.5	0.1	2.2	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|564287698|ref|YP_008873946.1|	-	0.0026	17.8	0.5	0.016	15.3	0.0	2.5	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_8	PF02954.19	gi|564287698|ref|YP_008873946.1|	-	0.0048	16.7	0.0	0.011	15.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_24	PF13412.6	gi|564287698|ref|YP_008873946.1|	-	0.0067	16.0	0.0	0.015	14.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_psq	PF05225.16	gi|564287698|ref|YP_008873946.1|	-	0.023	14.4	0.1	0.085	12.6	0.1	2.0	1	1	0	1	1	1	0	helix-turn-helix,	Psq	domain
HTH_IclR	PF09339.10	gi|564287698|ref|YP_008873946.1|	-	0.052	13.3	0.2	0.26	11.1	0.0	2.2	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564287698|ref|YP_008873946.1|	-	0.06	13.2	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564287698|ref|YP_008873946.1|	-	0.087	13.0	0.1	0.23	11.6	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|564287698|ref|YP_008873946.1|	-	0.16	11.9	0.0	0.82	9.6	0.0	2.2	2	0	0	2	2	2	0	MarR	family
Cdc6_C	PF09079.11	gi|564287699|ref|YP_008873947.1|	-	4.8e-17	61.7	0.0	1.2e-16	60.4	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|564287699|ref|YP_008873947.1|	-	2.3e-12	47.6	3.2	1.7e-11	44.8	0.4	2.7	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564287699|ref|YP_008873947.1|	-	7.7e-12	45.7	0.0	1e-10	42.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|564287699|ref|YP_008873947.1|	-	0.00015	22.2	0.0	0.00035	21.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|564287699|ref|YP_008873947.1|	-	0.00088	18.5	0.0	0.0015	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_32	PF13654.6	gi|564287699|ref|YP_008873947.1|	-	0.002	17.0	0.0	1.5	7.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ATPase_2	PF01637.18	gi|564287699|ref|YP_008873947.1|	-	0.0021	18.0	0.0	0.0049	16.8	0.0	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|564287699|ref|YP_008873947.1|	-	0.0042	17.6	0.1	0.021	15.3	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|564287699|ref|YP_008873947.1|	-	0.0057	16.7	0.3	0.21	11.6	0.0	3.0	3	1	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|564287699|ref|YP_008873947.1|	-	0.0074	16.2	0.0	0.016	15.1	0.0	1.7	1	0	0	1	1	1	1	NACHT	domain
AAA_24	PF13479.6	gi|564287699|ref|YP_008873947.1|	-	0.0074	16.0	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|564287699|ref|YP_008873947.1|	-	0.0086	15.5	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|564287699|ref|YP_008873947.1|	-	0.014	15.1	0.0	0.024	14.3	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|564287699|ref|YP_008873947.1|	-	0.018	15.4	0.0	0.034	14.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
CbiA	PF01656.23	gi|564287699|ref|YP_008873947.1|	-	0.022	14.8	0.0	0.068	13.2	0.1	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NTPase_1	PF03266.15	gi|564287699|ref|YP_008873947.1|	-	0.026	14.4	0.0	0.06	13.3	0.0	1.6	1	1	0	1	1	1	0	NTPase
TsaE	PF02367.17	gi|564287699|ref|YP_008873947.1|	-	0.053	13.5	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_7	PF12775.7	gi|564287699|ref|YP_008873947.1|	-	0.068	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DUF1759	PF03564.15	gi|564287699|ref|YP_008873947.1|	-	0.087	12.8	0.0	0.27	11.1	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1759)
NB-ARC	PF00931.22	gi|564287699|ref|YP_008873947.1|	-	0.12	11.6	0.0	3.3	6.8	0.0	2.2	2	0	0	2	2	2	0	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|564287699|ref|YP_008873947.1|	-	0.12	12.3	0.0	0.29	11.0	0.0	1.6	2	0	0	2	2	1	0	RsgA	GTPase
KAP_NTPase	PF07693.14	gi|564287699|ref|YP_008873947.1|	-	0.13	11.4	0.2	5.6	6.1	0.0	2.1	1	1	1	2	2	2	0	KAP	family	P-loop	domain
OB_aCoA_assoc	PF01796.17	gi|564287700|ref|YP_008873948.1|	-	1.1e-17	63.8	1.6	1.6e-17	63.2	1.6	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|564287700|ref|YP_008873948.1|	-	1e-13	50.8	2.1	2.3e-13	49.7	2.1	1.6	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Thiolase_N	PF00108.23	gi|564287701|ref|YP_008873949.1|	-	3.9e-23	82.1	2.3	1.4e-22	80.3	0.8	2.4	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564287701|ref|YP_008873949.1|	-	2.1e-07	30.6	0.4	5.7e-07	29.2	0.4	1.8	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564287701|ref|YP_008873949.1|	-	9.9e-05	22.0	0.5	9.9e-05	22.0	0.5	2.1	3	0	0	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
Peptidase_M20	PF01546.28	gi|564287701|ref|YP_008873949.1|	-	0.055	13.2	0.6	0.15	11.7	0.1	1.9	2	1	0	2	2	2	0	Peptidase	family	M20/M25/M40
DUF3160	PF11369.8	gi|564287701|ref|YP_008873949.1|	-	0.062	11.8	0.1	0.13	10.7	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3160)
ACP_syn_III	PF08545.10	gi|564287701|ref|YP_008873949.1|	-	0.22	11.4	7.1	1.9	8.4	0.2	2.9	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Oxidored_FMN	PF00724.20	gi|564287702|ref|YP_008873950.1|	-	1.9e-63	214.8	0.0	2.2e-63	214.6	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.21	gi|564287702|ref|YP_008873950.1|	-	0.0026	17.2	0.0	0.0046	16.4	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|564287702|ref|YP_008873950.1|	-	0.08	12.1	0.0	0.14	11.4	0.0	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
SBP_bac_8	PF13416.6	gi|564287703|ref|YP_008873951.1|	-	1e-38	133.8	0.9	1.3e-38	133.5	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564287703|ref|YP_008873951.1|	-	2.9e-27	96.4	0.4	3.8e-27	96.1	0.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564287703|ref|YP_008873951.1|	-	0.00017	21.2	0.9	0.00041	20.1	0.9	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_6	PF13343.6	gi|564287703|ref|YP_008873951.1|	-	0.0089	15.5	0.0	0.28	10.5	0.0	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|564287703|ref|YP_008873951.1|	-	0.027	14.2	0.1	0.39	10.4	0.0	2.5	2	1	1	3	3	3	0	Bacterial	extracellular	solute-binding	protein
BamHI	PF02923.15	gi|564287703|ref|YP_008873951.1|	-	0.16	11.7	0.0	0.31	10.8	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease	BamHI
Adhes-Ig_like	PF09085.10	gi|564287703|ref|YP_008873951.1|	-	0.16	12.1	0.1	0.55	10.4	0.0	1.8	2	0	0	2	2	2	0	Adhesion	molecule,	immunoglobulin-like
BPD_transp_1	PF00528.22	gi|564287704|ref|YP_008873952.1|	-	3.9e-13	49.5	17.0	3.9e-13	49.5	17.0	2.3	2	1	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
CCB1	PF12046.8	gi|564287704|ref|YP_008873952.1|	-	0.42	9.9	2.5	0.98	8.7	2.5	1.6	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
Baculo_11_kDa	PF06143.11	gi|564287704|ref|YP_008873952.1|	-	3.3	7.3	5.3	1	9.0	0.1	2.4	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
BPD_transp_1	PF00528.22	gi|564287705|ref|YP_008873953.1|	-	1.2e-11	44.7	18.6	1.2e-11	44.7	18.6	2.1	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF347	PF03988.12	gi|564287705|ref|YP_008873953.1|	-	0.034	14.3	3.8	0.29	11.4	0.1	3.4	2	0	0	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
DDE_Tnp_IS66_C	PF13817.6	gi|564287705|ref|YP_008873953.1|	-	0.079	13.2	0.0	0.18	12.1	0.0	1.6	1	0	0	1	1	1	0	IS66	C-terminal	element
Adeno_E3_CR2	PF02439.15	gi|564287705|ref|YP_008873953.1|	-	1.7	8.5	5.3	11	5.9	0.9	2.7	2	0	0	2	2	2	0	Adenovirus	E3	region	protein	CR2
ABC_tran	PF00005.27	gi|564287706|ref|YP_008873954.1|	-	1.5e-31	109.8	0.0	2.2e-31	109.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564287706|ref|YP_008873954.1|	-	1.7e-12	47.3	0.3	1.2e-11	44.7	0.1	2.3	2	0	0	2	2	2	1	TOBE	domain
OB_MalK	PF17912.1	gi|564287706|ref|YP_008873954.1|	-	9.6e-10	39.2	0.3	8.7e-09	36.1	0.1	2.8	3	0	0	3	3	3	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|564287706|ref|YP_008873954.1|	-	2.4e-06	27.6	0.0	0.048	13.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|564287706|ref|YP_008873954.1|	-	4.4e-06	26.9	0.1	3.5e-05	24.0	0.0	2.4	2	0	0	2	2	2	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|564287706|ref|YP_008873954.1|	-	0.00021	21.8	1.2	0.018	15.6	0.0	3.7	3	0	0	3	3	3	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|564287706|ref|YP_008873954.1|	-	0.0022	17.4	0.0	0.0088	15.5	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564287706|ref|YP_008873954.1|	-	0.0078	16.6	0.1	0.017	15.5	0.1	1.6	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564287706|ref|YP_008873954.1|	-	0.0092	16.3	0.0	0.018	15.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564287706|ref|YP_008873954.1|	-	0.028	14.4	0.0	0.043	13.7	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
Ribosomal_S17	PF00366.20	gi|564287706|ref|YP_008873954.1|	-	0.06	13.5	0.0	2.4	8.3	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	protein	S17
AAA_30	PF13604.6	gi|564287706|ref|YP_008873954.1|	-	0.061	13.0	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564287706|ref|YP_008873954.1|	-	0.063	12.8	0.1	0.32	10.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|564287706|ref|YP_008873954.1|	-	0.085	13.3	0.0	0.16	12.4	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|564287706|ref|YP_008873954.1|	-	0.097	12.6	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|564287706|ref|YP_008873954.1|	-	0.19	11.5	0.0	0.41	10.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF4131	PF13567.6	gi|564287706|ref|YP_008873954.1|	-	0.2	11.3	0.0	2.7	7.6	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
GDPD	PF03009.17	gi|564287707|ref|YP_008873955.1|	-	7.2e-22	78.4	0.1	3.1e-21	76.3	0.1	2.0	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
PEP_hydrolase	PF09370.10	gi|564287707|ref|YP_008873955.1|	-	0.0077	15.5	0.0	0.016	14.4	0.0	1.5	1	0	0	1	1	1	1	Phosphoenolpyruvate	hydrolase-like
GDPD_2	PF13653.6	gi|564287707|ref|YP_008873955.1|	-	0.011	16.2	0.0	0.12	12.9	0.0	2.5	2	0	0	2	2	2	0	Glycerophosphoryl	diester	phosphodiesterase	family
Hydrolase_6	PF13344.6	gi|564287708|ref|YP_008873956.1|	-	2e-25	88.8	0.0	3.4e-25	88.1	0.0	1.4	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564287708|ref|YP_008873956.1|	-	4e-23	81.3	0.1	4.6e-22	77.9	0.0	2.4	3	0	0	3	3	3	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564287708|ref|YP_008873956.1|	-	1.2e-14	55.1	0.1	1.6e-14	54.7	0.1	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564287708|ref|YP_008873956.1|	-	1.3e-08	35.1	0.1	9.8e-07	29.0	0.0	2.7	2	1	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|564287708|ref|YP_008873956.1|	-	0.0014	18.3	0.0	0.0033	17.0	0.0	1.6	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.12	gi|564287708|ref|YP_008873956.1|	-	0.026	14.3	0.2	0.23	11.1	0.0	2.0	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Peptidase_M4_C	PF02868.15	gi|564287708|ref|YP_008873956.1|	-	0.037	13.9	0.0	0.055	13.3	0.0	1.2	1	0	0	1	1	1	0	Thermolysin	metallopeptidase,	alpha-helical	domain
DUF4010	PF13194.6	gi|564287709|ref|YP_008873958.1|	-	2.4e-51	174.4	20.8	2.4e-51	174.4	20.8	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|564287709|ref|YP_008873958.1|	-	1.4e-21	77.1	10.5	1.4e-21	77.1	10.5	3.5	2	1	1	3	3	3	1	MgtC	family
Phosphonate-bd	PF12974.7	gi|564287710|ref|YP_008873959.1|	-	3e-60	203.8	0.0	4e-60	203.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.9	gi|564287710|ref|YP_008873959.1|	-	0.004	16.9	0.2	0.0077	16.0	0.2	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_3	PF00497.20	gi|564287710|ref|YP_008873959.1|	-	0.012	15.0	0.0	0.065	12.7	0.0	1.9	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.11	gi|564287710|ref|YP_008873959.1|	-	0.012	15.5	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	NMT1/THI5	like
ABC_tran	PF00005.27	gi|564287711|ref|YP_008873960.1|	-	6.6e-37	127.1	0.0	8.9e-37	126.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287711|ref|YP_008873960.1|	-	2.5e-06	27.5	0.3	0.043	13.6	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|564287711|ref|YP_008873960.1|	-	1.1e-05	25.8	0.1	0.00023	21.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|564287711|ref|YP_008873960.1|	-	4.8e-05	23.0	0.1	9.3e-05	22.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564287711|ref|YP_008873960.1|	-	7.9e-05	23.1	0.2	0.00014	22.3	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564287711|ref|YP_008873960.1|	-	0.00011	22.2	0.2	0.00049	20.1	0.1	1.9	2	0	0	2	2	2	1	RsgA	GTPase
AAA_30	PF13604.6	gi|564287711|ref|YP_008873960.1|	-	0.00051	19.8	0.0	0.00092	19.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564287711|ref|YP_008873960.1|	-	0.00061	19.3	0.2	0.3	10.5	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|564287711|ref|YP_008873960.1|	-	0.00077	19.6	0.0	0.0013	18.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|564287711|ref|YP_008873960.1|	-	0.0017	18.9	0.0	0.0026	18.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564287711|ref|YP_008873960.1|	-	0.013	15.5	0.0	0.094	12.6	0.0	2.0	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_5	PF07728.14	gi|564287711|ref|YP_008873960.1|	-	0.013	15.5	0.1	0.18	11.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|564287711|ref|YP_008873960.1|	-	0.014	15.9	0.0	0.029	14.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|564287711|ref|YP_008873960.1|	-	0.017	14.6	0.1	4	6.8	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
MMR_HSR1	PF01926.23	gi|564287711|ref|YP_008873960.1|	-	0.017	15.2	0.0	0.032	14.3	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|564287711|ref|YP_008873960.1|	-	0.021	14.0	0.0	0.034	13.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
DUF87	PF01935.17	gi|564287711|ref|YP_008873960.1|	-	0.028	14.5	0.5	0.24	11.5	0.1	2.0	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|564287711|ref|YP_008873960.1|	-	0.034	13.9	0.0	0.05	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564287711|ref|YP_008873960.1|	-	0.035	13.5	0.0	0.056	12.8	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
CbiA	PF01656.23	gi|564287711|ref|YP_008873960.1|	-	0.06	13.4	0.0	0.092	12.8	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.17	gi|564287711|ref|YP_008873960.1|	-	0.069	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ATP_bind_1	PF03029.17	gi|564287711|ref|YP_008873960.1|	-	0.07	12.9	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.6	gi|564287711|ref|YP_008873960.1|	-	0.073	13.3	0.1	0.14	12.4	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|564287711|ref|YP_008873960.1|	-	0.078	12.7	0.0	0.32	10.7	0.1	1.8	2	0	0	2	2	2	0	Cytidylate	kinase
NACHT	PF05729.12	gi|564287711|ref|YP_008873960.1|	-	0.087	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
cobW	PF02492.19	gi|564287711|ref|YP_008873960.1|	-	0.088	12.4	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_27	PF13514.6	gi|564287711|ref|YP_008873960.1|	-	0.12	12.0	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564287711|ref|YP_008873960.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
SbcCD_C	PF13558.6	gi|564287711|ref|YP_008873960.1|	-	0.15	12.3	0.2	1.8	8.8	0.2	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
TsaE	PF02367.17	gi|564287711|ref|YP_008873960.1|	-	0.17	11.9	0.0	0.26	11.3	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_19	PF13245.6	gi|564287711|ref|YP_008873960.1|	-	0.17	12.2	0.0	0.23	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.11	gi|564287711|ref|YP_008873960.1|	-	0.17	10.7	0.0	0.22	10.4	0.0	1.1	1	0	0	1	1	1	0	PrkA	AAA	domain
G-alpha	PF00503.20	gi|564287711|ref|YP_008873960.1|	-	0.27	10.4	0.0	0.27	10.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
BPD_transp_1	PF00528.22	gi|564287712|ref|YP_008873961.1|	-	2.4e-14	53.5	14.8	1.1e-13	51.4	14.8	2.0	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564287713|ref|YP_008873962.1|	-	2.2e-16	60.1	17.3	2.2e-16	60.1	17.3	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Helicase_C	PF00271.31	gi|564287714|ref|YP_008873963.1|	-	2.6e-23	82.5	0.0	6.1e-23	81.3	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|564287714|ref|YP_008873963.1|	-	5.4e-18	64.8	0.0	4.5e-16	58.5	0.0	2.5	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|564287714|ref|YP_008873963.1|	-	1.1e-11	45.0	0.0	3.3e-11	43.5	0.0	1.9	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|564287714|ref|YP_008873963.1|	-	2.3e-06	27.5	0.0	7e-06	25.9	0.0	1.9	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|564287714|ref|YP_008873963.1|	-	0.00044	19.4	0.0	0.00044	19.4	0.0	2.7	2	0	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|564287714|ref|YP_008873963.1|	-	0.00098	18.9	0.0	0.06	13.0	0.0	2.4	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
AAA_34	PF13872.6	gi|564287714|ref|YP_008873963.1|	-	0.0076	15.2	0.6	0.038	12.9	0.6	2.0	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
DUF2075	PF09848.9	gi|564287714|ref|YP_008873963.1|	-	0.26	10.5	0.0	0.26	10.5	0.0	2.8	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
Fib_alpha	PF08702.10	gi|564287714|ref|YP_008873963.1|	-	3.2	7.9	7.5	2	8.6	3.8	2.6	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
N6_Mtase	PF02384.16	gi|564287715|ref|YP_008873964.1|	-	5e-07	29.3	0.0	0.00041	19.7	0.0	3.0	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_31	PF13847.6	gi|564287715|ref|YP_008873964.1|	-	0.007	16.2	0.0	0.025	14.4	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|564287715|ref|YP_008873964.1|	-	0.061	13.0	0.0	1.5	8.4	0.0	2.4	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
ComR_TPR	PF18710.1	gi|564287715|ref|YP_008873964.1|	-	0.1	12.1	0.1	0.67	9.5	0.3	2.0	2	0	0	2	2	2	0	ComR	tetratricopeptide
PglZ	PF08665.12	gi|564287716|ref|YP_008873965.1|	-	1.3e-08	35.2	0.0	2.6e-08	34.2	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564287717|ref|YP_008873966.1|	-	0.019	15.3	0.0	0.043	14.2	0.0	1.6	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
N6_Mtase	PF02384.16	gi|564287718|ref|YP_008873967.1|	-	7.1e-09	35.4	0.0	9.7e-05	21.8	0.0	3.0	3	0	0	3	3	3	2	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|564287718|ref|YP_008873967.1|	-	0.0023	17.6	0.0	3.1	7.5	0.0	3.6	4	0	0	4	4	4	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|564287718|ref|YP_008873967.1|	-	0.0046	16.8	0.0	0.027	14.3	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Chloroa_b-bind	PF00504.21	gi|564287719|ref|YP_008873968.1|	-	0.038	14.5	1.0	0.041	14.4	1.0	1.0	1	0	0	1	1	1	0	Chlorophyll	A-B	binding	protein
NucS	PF01939.16	gi|564287720|ref|YP_008873969.1|	-	3.6e-05	23.2	0.0	6.5e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Endonuclease	NucS
DUF1415	PF07209.12	gi|564287721|ref|YP_008873970.1|	-	0.08	12.7	0.0	0.33	10.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1415)
AAA_22	PF13401.6	gi|564287721|ref|YP_008873970.1|	-	0.13	12.6	0.0	6.5	7.0	0.0	3.5	3	0	0	3	3	3	0	AAA	domain
DUF1788	PF08747.11	gi|564287722|ref|YP_008873971.1|	-	2.6e-13	50.1	0.0	3.3e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.16	gi|564287722|ref|YP_008873971.1|	-	0.019	15.2	0.0	0.029	14.6	0.0	1.3	1	0	0	1	1	1	0	PTS	system	fructose	IIA	component
ABC_tran	PF00005.27	gi|564287723|ref|YP_008873972.1|	-	0.07	13.6	0.0	0.24	11.9	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
DUF1819	PF08849.11	gi|564287724|ref|YP_008873973.1|	-	0.00012	21.9	0.0	0.00029	20.7	0.0	1.6	1	1	0	1	1	1	1	Putative	inner	membrane	protein	(DUF1819)
ParA	PF10609.9	gi|564287725|ref|YP_008873974.1|	-	3.5e-64	216.6	0.0	4.9e-64	216.1	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|564287725|ref|YP_008873974.1|	-	5.4e-13	49.1	0.0	7.7e-13	48.6	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FeS_assembly_P	PF01883.19	gi|564287725|ref|YP_008873974.1|	-	4.1e-10	39.7	3.6	4.1e-10	39.7	3.6	2.9	3	0	0	3	3	3	1	Iron-sulfur	cluster	assembly	protein
AAA_31	PF13614.6	gi|564287725|ref|YP_008873974.1|	-	5.9e-10	39.3	0.0	6e-09	36.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
DUF2249	PF10006.9	gi|564287725|ref|YP_008873974.1|	-	7.2e-09	35.4	0.0	1.6e-08	34.3	0.0	1.6	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
VirC1	PF07015.11	gi|564287725|ref|YP_008873974.1|	-	2.8e-06	26.8	0.0	4.9e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
MipZ	PF09140.11	gi|564287725|ref|YP_008873974.1|	-	0.00018	20.9	0.5	0.0005	19.4	0.4	1.8	1	1	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.6	gi|564287725|ref|YP_008873974.1|	-	0.003	17.4	0.0	0.21	11.4	0.2	2.5	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|564287725|ref|YP_008873974.1|	-	0.0053	16.0	1.6	0.0089	15.2	0.5	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|564287725|ref|YP_008873974.1|	-	0.0058	16.1	0.3	0.026	14.0	0.3	1.8	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
Glyco_trans_4_4	PF13579.6	gi|564287725|ref|YP_008873974.1|	-	0.0063	17.0	0.3	0.0063	17.0	0.3	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
AAA_25	PF13481.6	gi|564287725|ref|YP_008873974.1|	-	0.017	14.7	1.5	0.051	13.1	1.0	2.0	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564287725|ref|YP_008873974.1|	-	0.029	14.0	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Asparaginase_C	PF17763.1	gi|564287725|ref|YP_008873974.1|	-	0.08	13.2	0.4	0.25	11.6	0.2	2.0	2	0	0	2	2	2	0	Glutaminase/Asparaginase	C-terminal	domain
MbeB_N	PF04837.12	gi|564287725|ref|YP_008873974.1|	-	0.14	12.5	0.0	0.44	10.9	0.0	1.8	2	0	0	2	2	2	0	MbeB-like,	N-term	conserved	region
CLP1_P	PF16575.5	gi|564287725|ref|YP_008873974.1|	-	0.25	11.1	0.0	0.51	10.1	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HEAT_2	PF13646.6	gi|564287726|ref|YP_008873976.1|	-	7.7e-26	90.3	25.8	2.5e-14	53.4	2.3	3.1	1	1	2	3	3	3	3	HEAT	repeats
HEAT	PF02985.22	gi|564287726|ref|YP_008873976.1|	-	8.2e-13	47.4	12.0	0.0018	18.4	0.0	5.8	6	0	0	6	6	6	4	HEAT	repeat
HEAT_EZ	PF13513.6	gi|564287726|ref|YP_008873976.1|	-	0.00019	21.8	10.6	0.034	14.7	0.2	4.6	2	1	3	5	5	5	3	HEAT-like	repeat
Cnd1	PF12717.7	gi|564287726|ref|YP_008873976.1|	-	0.0045	17.1	0.0	7.7	6.5	0.0	3.3	2	1	1	3	3	3	2	non-SMC	mitotic	condensation	complex	subunit	1
DUF4042	PF13251.6	gi|564287726|ref|YP_008873976.1|	-	0.054	13.2	0.0	2.3	7.9	0.0	3.0	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4042)
DUF2019	PF09450.10	gi|564287726|ref|YP_008873976.1|	-	1	9.4	4.4	10	6.1	1.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2019)
EB_dh	PF09459.10	gi|564287727|ref|YP_008873977.1|	-	2.4e-28	99.8	8.9	4.1e-28	99.0	8.9	1.4	1	1	0	1	1	1	1	Ethylbenzene	dehydrogenase
Nitrate_red_del	PF02613.15	gi|564287728|ref|YP_008873978.1|	-	6.8e-20	71.5	0.0	1.1e-19	70.8	0.0	1.4	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
DUF442	PF04273.13	gi|564287728|ref|YP_008873978.1|	-	0.061	13.4	1.2	0.57	10.3	0.1	2.5	3	0	0	3	3	3	0	Putative	phosphatase	(DUF442)
Luteo_P1-P2	PF08467.10	gi|564287728|ref|YP_008873978.1|	-	0.19	10.9	0.1	0.33	10.2	0.1	1.3	1	0	0	1	1	1	0	Luteovirus	RNA	polymerase	P1-P2/replicase
Fer4_11	PF13247.6	gi|564287729|ref|YP_008873979.1|	-	1.4e-32	111.8	5.5	1.4e-32	111.8	5.5	1.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564287729|ref|YP_008873979.1|	-	1.1e-13	51.6	0.7	4.9e-06	27.0	6.9	3.1	2	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564287729|ref|YP_008873979.1|	-	6.5e-08	32.6	17.9	0.00066	19.7	9.0	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564287729|ref|YP_008873979.1|	-	3.6e-07	29.9	23.7	0.00037	20.4	2.2	4.1	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|564287729|ref|YP_008873979.1|	-	3.4e-06	27.1	15.5	0.00064	19.8	6.5	3.0	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564287729|ref|YP_008873979.1|	-	3.9e-06	26.9	13.6	0.0029	17.7	1.7	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|564287729|ref|YP_008873979.1|	-	2.4e-05	24.2	23.0	0.012	15.7	1.4	3.8	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|564287729|ref|YP_008873979.1|	-	0.0035	17.1	1.7	0.0035	17.1	1.7	4.2	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|564287729|ref|YP_008873979.1|	-	0.0084	16.6	19.4	0.11	13.1	0.6	3.5	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564287729|ref|YP_008873979.1|	-	0.041	14.8	20.0	1.8	9.5	3.1	3.8	2	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
ETF_QO	PF05187.13	gi|564287729|ref|YP_008873979.1|	-	0.055	13.6	0.6	0.055	13.6	0.6	1.9	2	0	0	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_3	PF12798.7	gi|564287729|ref|YP_008873979.1|	-	0.1	13.6	31.2	0.55	11.3	5.9	4.2	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564287729|ref|YP_008873979.1|	-	0.26	11.9	26.7	0.74	10.5	2.0	4.3	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|564287729|ref|YP_008873979.1|	-	0.27	12.0	8.5	0.73	10.6	0.1	3.5	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|564287729|ref|YP_008873979.1|	-	0.35	11.5	12.0	0.64	10.6	0.4	3.5	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|564287729|ref|YP_008873979.1|	-	1	9.9	18.6	7.2	7.1	3.1	3.5	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.22	gi|564287730|ref|YP_008873980.1|	-	4.7e-60	203.7	0.0	8.7e-60	202.9	0.0	1.4	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564287730|ref|YP_008873980.1|	-	3.7e-12	46.3	0.6	2.5e-11	43.6	0.0	2.5	3	0	0	3	3	3	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564287730|ref|YP_008873980.1|	-	0.0009	19.2	0.4	0.0034	17.3	0.4	2.1	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|564287730|ref|YP_008873980.1|	-	0.0077	16.0	3.2	0.0077	16.0	3.2	1.6	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CDC48_N	PF02359.18	gi|564287730|ref|YP_008873980.1|	-	0.04	14.1	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
UCR_Fe-S_N	PF10399.9	gi|564287730|ref|YP_008873980.1|	-	0.11	11.9	0.6	0.2	11.0	0.6	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Usp	PF00582.26	gi|564287731|ref|YP_008873981.1|	-	2.7e-08	34.4	0.2	3.8e-08	33.9	0.2	1.3	1	0	0	1	1	1	1	Universal	stress	protein	family
Secretin_N	PF03958.17	gi|564287731|ref|YP_008873981.1|	-	0.021	15.2	0.2	0.038	14.4	0.2	1.4	1	0	0	1	1	1	0	Bacterial	type	II/III	secretion	system	short	domain
FAD_binding_3	PF01494.19	gi|564287732|ref|YP_008873982.1|	-	2.4e-11	43.5	6.2	3.3e-09	36.5	6.2	2.9	1	1	0	1	1	1	1	FAD	binding	domain
Tubulin	PF00091.25	gi|564287733|ref|YP_008873983.1|	-	2.1e-27	96.6	0.0	3.1e-27	96.1	0.0	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|564287733|ref|YP_008873983.1|	-	5.8e-07	29.0	1.9	0.00058	19.1	0.3	2.6	1	1	2	3	3	3	2	Tubulin	like
FmdA_AmdA	PF03069.15	gi|564287734|ref|YP_008873984.1|	-	5.3e-31	107.8	4.6	5.3e-16	58.5	1.1	2.8	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
TRAM	PF01938.20	gi|564287734|ref|YP_008873984.1|	-	0.15	12.1	1.2	0.5	10.4	0.3	2.2	2	0	0	2	2	2	0	TRAM	domain
5_nucleotid_C	PF02872.18	gi|564287735|ref|YP_008873985.1|	-	6.2e-27	94.7	0.0	1.6e-26	93.4	0.0	1.6	2	0	0	2	2	2	1	5'-nucleotidase,	C-terminal	domain
Metallophos_2	PF12850.7	gi|564287735|ref|YP_008873985.1|	-	0.00053	20.2	1.1	0.0021	18.3	1.1	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564287735|ref|YP_008873985.1|	-	0.0029	18.1	0.3	0.0062	17.0	0.3	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|564287735|ref|YP_008873985.1|	-	0.14	11.4	0.1	0.36	10.1	0.1	1.6	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
ABC_tran	PF00005.27	gi|564287737|ref|YP_008873987.1|	-	2.3e-57	193.3	0.0	1.9e-28	99.7	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|564287737|ref|YP_008873987.1|	-	3.8e-19	69.6	4.9	0.00028	20.8	0.0	4.1	3	1	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287737|ref|YP_008873987.1|	-	2.2e-15	56.7	0.2	6.8e-08	32.2	0.1	3.9	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564287737|ref|YP_008873987.1|	-	7e-08	32.1	0.3	0.013	15.2	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|564287737|ref|YP_008873987.1|	-	6.9e-07	29.6	2.9	0.0022	18.2	0.0	3.2	2	2	1	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|564287737|ref|YP_008873987.1|	-	1.8e-06	28.6	0.0	0.065	13.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|564287737|ref|YP_008873987.1|	-	3.9e-06	26.8	0.1	0.35	10.5	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_13	PF13166.6	gi|564287737|ref|YP_008873987.1|	-	1.2e-05	24.2	0.0	0.17	10.5	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|564287737|ref|YP_008873987.1|	-	1.4e-05	25.5	0.9	0.16	12.3	0.6	2.9	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564287737|ref|YP_008873987.1|	-	5.6e-05	23.4	3.5	0.19	12.0	0.3	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|564287737|ref|YP_008873987.1|	-	8.5e-05	22.4	0.7	0.42	10.3	0.2	2.9	2	2	0	2	2	2	2	AAA	domain
PduV-EutP	PF10662.9	gi|564287737|ref|YP_008873987.1|	-	0.00013	21.8	0.1	0.61	9.8	0.0	2.3	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|564287737|ref|YP_008873987.1|	-	0.0003	20.8	0.5	0.019	14.9	0.1	2.4	2	0	0	2	2	2	1	RsgA	GTPase
AAA_24	PF13479.6	gi|564287737|ref|YP_008873987.1|	-	0.00034	20.4	0.0	0.31	10.7	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|564287737|ref|YP_008873987.1|	-	0.0004	20.3	0.5	1.1	9.1	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
DUF3584	PF12128.8	gi|564287737|ref|YP_008873987.1|	-	0.00041	18.1	0.2	0.14	9.7	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3584)
ATPase	PF06745.13	gi|564287737|ref|YP_008873987.1|	-	0.00053	19.4	0.1	0.33	10.3	0.0	2.4	2	0	0	2	2	2	2	KaiC
RNA_helicase	PF00910.22	gi|564287737|ref|YP_008873987.1|	-	0.00063	20.1	0.0	0.49	10.8	0.0	3.0	3	0	0	3	3	2	1	RNA	helicase
ATP_bind_1	PF03029.17	gi|564287737|ref|YP_008873987.1|	-	0.0011	18.9	0.8	0.13	12.0	0.1	3.0	3	0	0	3	3	3	1	Conserved	hypothetical	ATP	binding	protein
Zeta_toxin	PF06414.12	gi|564287737|ref|YP_008873987.1|	-	0.0012	18.2	0.0	0.052	12.8	0.0	2.6	2	0	0	2	2	2	1	Zeta	toxin
MMR_HSR1	PF01926.23	gi|564287737|ref|YP_008873987.1|	-	0.0012	18.9	0.2	0.25	11.4	0.0	3.1	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
Mg_chelatase	PF01078.21	gi|564287737|ref|YP_008873987.1|	-	0.0012	18.2	0.0	0.31	10.4	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Roc	PF08477.13	gi|564287737|ref|YP_008873987.1|	-	0.0013	19.0	0.2	0.65	10.2	0.0	2.4	2	0	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NB-ARC	PF00931.22	gi|564287737|ref|YP_008873987.1|	-	0.0014	17.9	0.2	0.7	9.0	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
T2SSE	PF00437.20	gi|564287737|ref|YP_008873987.1|	-	0.0029	16.7	0.7	1.9	7.4	0.0	3.5	4	0	0	4	4	4	1	Type	II/IV	secretion	system	protein
AAA	PF00004.29	gi|564287737|ref|YP_008873987.1|	-	0.0035	17.8	0.0	1.4	9.3	0.0	3.4	4	0	0	4	4	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|564287737|ref|YP_008873987.1|	-	0.0045	17.2	0.1	1.1	9.4	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|564287737|ref|YP_008873987.1|	-	0.0051	16.8	0.1	5.1	7.1	0.0	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SbcCD_C	PF13558.6	gi|564287737|ref|YP_008873987.1|	-	0.0072	16.5	0.1	3.8	7.8	0.0	3.1	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
DLIC	PF05783.11	gi|564287737|ref|YP_008873987.1|	-	0.0072	15.2	0.1	0.81	8.4	0.1	2.1	2	0	0	2	2	2	1	Dynein	light	intermediate	chain	(DLIC)
NTPase_1	PF03266.15	gi|564287737|ref|YP_008873987.1|	-	0.0093	15.9	2.4	0.6	10.0	0.0	3.1	4	0	0	4	4	3	1	NTPase
AAA_18	PF13238.6	gi|564287737|ref|YP_008873987.1|	-	0.015	15.9	0.0	3.2	8.3	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564287737|ref|YP_008873987.1|	-	0.025	14.6	0.0	5.7	7.0	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|564287737|ref|YP_008873987.1|	-	0.033	13.8	0.0	2.6	7.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|564287737|ref|YP_008873987.1|	-	0.034	13.7	0.2	4.3	6.8	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_17	PF13207.6	gi|564287737|ref|YP_008873987.1|	-	0.042	14.3	0.2	2.2	8.7	0.1	2.8	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|564287737|ref|YP_008873987.1|	-	0.043	13.4	0.2	11	5.6	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
ATPase_2	PF01637.18	gi|564287737|ref|YP_008873987.1|	-	0.046	13.6	0.0	12	5.7	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
G-alpha	PF00503.20	gi|564287737|ref|YP_008873987.1|	-	0.048	12.8	0.0	5	6.2	0.0	2.2	2	0	0	2	2	2	0	G-protein	alpha	subunit
MukB	PF04310.12	gi|564287737|ref|YP_008873987.1|	-	0.065	13.0	0.4	1.9	8.2	0.1	2.2	2	0	0	2	2	2	0	MukB	N-terminal
Ras	PF00071.22	gi|564287737|ref|YP_008873987.1|	-	0.08	12.5	0.4	4	7.0	0.0	3.0	3	0	0	3	3	3	0	Ras	family
cobW	PF02492.19	gi|564287737|ref|YP_008873987.1|	-	0.088	12.4	1.0	3.9	7.0	0.2	2.5	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_19	PF13245.6	gi|564287737|ref|YP_008873987.1|	-	0.09	13.1	0.2	1.2	9.5	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|564287737|ref|YP_008873987.1|	-	0.09	12.5	0.0	31	4.2	0.0	3.2	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|564287737|ref|YP_008873987.1|	-	0.097	12.7	0.1	5.6	7.0	0.0	2.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Ploopntkinase3	PF18751.1	gi|564287737|ref|YP_008873987.1|	-	0.11	12.4	0.0	1.1	9.2	0.0	2.2	2	0	0	2	2	2	0	P-loop	Nucleotide	Kinase3
AAA_25	PF13481.6	gi|564287737|ref|YP_008873987.1|	-	0.12	12.0	6.1	4	7.0	0.4	3.7	3	1	0	3	3	3	0	AAA	domain
PFK	PF00365.20	gi|564287737|ref|YP_008873987.1|	-	0.13	11.5	0.0	0.25	10.6	0.0	1.4	1	0	0	1	1	1	0	Phosphofructokinase
Pox_A32	PF04665.12	gi|564287737|ref|YP_008873987.1|	-	0.16	11.4	0.1	1.8	7.9	0.0	2.1	2	0	0	2	2	2	0	Poxvirus	A32	protein
CbiQ	PF02361.16	gi|564287738|ref|YP_008873988.1|	-	1.9e-15	57.1	14.5	8e-15	55.1	14.5	1.8	1	1	0	1	1	1	1	Cobalt	transport	protein
2-ph_phosp	PF04029.14	gi|564287739|ref|YP_008873989.1|	-	5.3e-22	78.1	0.0	7.3e-22	77.7	0.0	1.1	1	0	0	1	1	1	1	2-phosphosulpholactate	phosphatase
PHP	PF02811.19	gi|564287740|ref|YP_008873990.1|	-	1.8e-06	28.4	0.1	2.2e-06	28.1	0.1	1.2	1	0	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|564287740|ref|YP_008873990.1|	-	0.041	13.6	0.0	0.12	12.1	0.0	1.9	1	0	0	1	1	1	0	PHP-associated
DUF3592	PF12158.8	gi|564287741|ref|YP_008873991.1|	-	1.2e-16	61.1	0.2	1.5e-16	60.8	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3592)
DUF5602	PF18197.1	gi|564287742|ref|YP_008873992.1|	-	0.02	15.4	0.0	0.74	10.4	0.0	3.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5602)
AAA_16	PF13191.6	gi|564287743|ref|YP_008873993.1|	-	8.2e-05	23.0	2.8	0.13	12.7	0.6	4.0	3	1	0	3	3	3	2	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564287743|ref|YP_008873993.1|	-	0.051	13.7	0.0	10	6.2	0.0	3.3	2	0	0	2	2	2	0	AAA	domain
4HBT	PF03061.22	gi|564287744|ref|YP_008873994.1|	-	0.12	12.7	0.0	0.16	12.3	0.0	1.2	1	0	0	1	1	1	0	Thioesterase	superfamily
UPF0261	PF06792.11	gi|564287746|ref|YP_008873996.1|	-	5e-168	559.2	6.0	5.6e-168	559.1	6.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0261)
HisG	PF01634.18	gi|564287746|ref|YP_008873996.1|	-	0.00029	20.9	0.1	0.00076	19.5	0.1	1.7	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
SpoVS	PF04232.12	gi|564287746|ref|YP_008873996.1|	-	0.093	12.5	0.8	0.8	9.5	0.0	2.6	3	0	0	3	3	3	0	Stage	V	sporulation	protein	S	(SpoVS)
Cupin_2	PF07883.11	gi|564287747|ref|YP_008873997.1|	-	2.3e-19	68.9	0.8	4e-19	68.1	0.8	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|564287747|ref|YP_008873997.1|	-	8.5e-08	31.9	0.0	1.2e-07	31.5	0.0	1.1	1	0	0	1	1	1	1	Cupin
Cupin_3	PF05899.12	gi|564287747|ref|YP_008873997.1|	-	2.2e-07	30.4	0.4	3.7e-07	29.8	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|564287747|ref|YP_008873997.1|	-	8.8e-07	28.9	0.0	1.1e-06	28.6	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.8	gi|564287747|ref|YP_008873997.1|	-	1.4e-05	25.2	0.0	2.1e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_7	PF12973.7	gi|564287747|ref|YP_008873997.1|	-	0.00023	21.0	0.1	0.00034	20.5	0.1	1.2	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
MannoseP_isomer	PF01050.18	gi|564287747|ref|YP_008873997.1|	-	0.00035	20.5	0.0	0.00043	20.2	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
ARD	PF03079.14	gi|564287747|ref|YP_008873997.1|	-	0.028	14.6	0.2	0.041	14.1	0.2	1.2	1	0	0	1	1	1	0	ARD/ARD'	family
DMSP_lyase	PF16867.5	gi|564287747|ref|YP_008873997.1|	-	0.073	12.7	0.0	0.093	12.4	0.0	1.1	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
NapD	PF03927.13	gi|564287747|ref|YP_008873997.1|	-	0.16	12.0	0.2	0.31	11.1	0.0	1.6	2	0	0	2	2	2	0	NapD	protein
PEP_hydrolase	PF09370.10	gi|564287748|ref|YP_008873998.1|	-	2.9e-129	430.0	0.2	3.3e-129	429.8	0.2	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	hydrolase-like
NMO	PF03060.15	gi|564287748|ref|YP_008873998.1|	-	0.016	14.6	0.1	0.026	13.9	0.1	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
DUF3287	PF11690.8	gi|564287828|ref|YP_008873999.1|	-	0.11	12.2	0.0	0.14	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3287)
Cyt_bd_oxida_I	PF01654.17	gi|564287749|ref|YP_008874000.1|	-	2.7e-139	464.4	20.7	3.2e-139	464.2	20.7	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	I
Cyt_bd_oxida_II	PF02322.15	gi|564287750|ref|YP_008874001.1|	-	8.5e-64	215.8	28.1	9.6e-64	215.6	28.1	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
DUF2569	PF10754.9	gi|564287750|ref|YP_008874001.1|	-	8	6.9	9.8	0.3	11.5	1.4	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2569)
E1-E2_ATPase	PF00122.20	gi|564287751|ref|YP_008874002.1|	-	4.1e-43	147.0	0.2	4.1e-43	147.0	0.2	2.4	2	1	2	4	4	4	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564287751|ref|YP_008874002.1|	-	5.7e-31	108.4	2.9	1.2e-30	107.4	2.9	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564287751|ref|YP_008874002.1|	-	1.4e-08	35.1	0.0	6.8e-08	32.9	0.0	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564287751|ref|YP_008874002.1|	-	2.3e-05	24.2	0.1	3.6e-05	23.6	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|564287751|ref|YP_008874002.1|	-	0.0092	16.7	1.1	0.022	15.5	0.3	1.9	2	0	0	2	2	2	1	Putative	metal-binding	domain	of	cation	transport	ATPase
DsbD_2	PF13386.6	gi|574087273|ref|YP_008874003.2|	-	1.4e-31	110.0	18.0	1.7e-31	109.7	18.0	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Chlorosome_CsmC	PF11098.8	gi|574087273|ref|YP_008874003.2|	-	0.02	14.9	0.9	1.5	8.8	0.1	2.4	1	1	1	2	2	2	0	Chlorosome	envelope	protein	C
DDE_Tnp_IS240	PF13610.6	gi|564287753|ref|YP_008874004.1|	-	3.8e-18	66.1	0.1	5.3e-18	65.6	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|564287753|ref|YP_008874004.1|	-	2.5e-06	27.2	1.1	4.5e-06	26.3	1.1	1.5	1	0	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.10	gi|564287753|ref|YP_008874004.1|	-	0.0096	15.9	0.6	0.15	12.1	0.0	2.5	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
Cas_CXXC_CXXC	PF09706.10	gi|564287829|ref|YP_008874005.1|	-	0.086	13.1	1.2	0.61	10.4	0.2	2.2	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
FYVE	PF01363.21	gi|564287829|ref|YP_008874005.1|	-	0.2	11.8	5.8	2.4	8.4	0.4	2.6	1	1	1	2	2	2	0	FYVE	zinc	finger
E1-E2_ATPase	PF00122.20	gi|564287754|ref|YP_008874008.1|	-	3e-50	170.2	0.7	3e-50	170.2	0.7	2.2	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|564287754|ref|YP_008874008.1|	-	1.2e-38	132.6	3.9	2.8e-38	131.5	3.9	1.6	1	0	0	1	1	1	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|564287754|ref|YP_008874008.1|	-	1.4e-21	77.7	0.2	4.2e-21	76.2	0.2	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|564287754|ref|YP_008874008.1|	-	1.9e-21	75.5	0.0	8.2e-21	73.5	0.0	2.2	2	0	0	2	2	2	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|564287754|ref|YP_008874008.1|	-	1.8e-16	60.0	0.0	9.3e-16	57.7	0.0	2.2	3	0	0	3	3	3	1	Cation	transport	ATPase	(P-type)
HAD	PF12710.7	gi|564287754|ref|YP_008874008.1|	-	0.00038	20.9	0.0	0.00096	19.6	0.0	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564287754|ref|YP_008874008.1|	-	0.00056	19.7	2.6	0.026	14.3	0.9	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Phage_holin_2_3	PF16080.5	gi|564287754|ref|YP_008874008.1|	-	0.18	11.6	0.2	0.74	9.6	0.2	2.0	1	0	0	1	1	1	0	Bacteriophage	holin	family	HP1
DUF4395	PF14340.6	gi|564287754|ref|YP_008874008.1|	-	6.9	7.0	11.3	0.36	11.2	1.3	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4395)
Pyridox_ox_2	PF12900.7	gi|564287755|ref|YP_008874009.1|	-	5.4e-18	65.3	0.0	6.1e-18	65.2	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564287755|ref|YP_008874009.1|	-	2.8e-05	24.2	0.0	3.8e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
CBS	PF00571.28	gi|564287756|ref|YP_008874010.1|	-	9.3e-22	77.2	2.4	1e-09	38.7	0.4	2.6	2	0	0	2	2	2	2	CBS	domain
MaoC_dehydratas	PF01575.19	gi|564287756|ref|YP_008874010.1|	-	1.8e-17	63.0	0.0	4.8e-17	61.7	0.0	1.7	2	0	0	2	2	2	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564287756|ref|YP_008874010.1|	-	2.3e-06	27.8	0.0	8.3e-06	26.0	0.0	1.9	2	0	0	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
TruB_C	PF09142.11	gi|564287756|ref|YP_008874010.1|	-	0.093	12.5	0.1	0.82	9.5	0.0	2.4	2	0	0	2	2	2	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Cnd1	PF12717.7	gi|564287832|ref|YP_008874011.1|	-	6.9e-20	71.7	0.0	2.5e-06	27.6	0.0	3.4	2	1	1	3	3	3	3	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_2	PF13646.6	gi|564287832|ref|YP_008874011.1|	-	1.3e-18	67.2	26.8	3.7e-06	27.2	1.1	5.0	2	2	3	5	5	5	5	HEAT	repeats
HEAT	PF02985.22	gi|564287832|ref|YP_008874011.1|	-	2.2e-17	61.6	13.3	0.00088	19.3	0.2	7.4	7	0	0	7	7	7	4	HEAT	repeat
Adaptin_N	PF01602.20	gi|564287832|ref|YP_008874011.1|	-	1.2e-13	50.5	0.0	0.00092	17.9	0.0	3.3	2	1	1	3	3	3	3	Adaptin	N	terminal	region
HEAT_EZ	PF13513.6	gi|564287832|ref|YP_008874011.1|	-	1.3e-11	44.7	18.3	0.0034	17.8	0.4	5.9	6	1	1	7	7	6	4	HEAT-like	repeat
HEAT_PBS	PF03130.16	gi|564287832|ref|YP_008874011.1|	-	0.002	18.6	15.9	10	7.2	0.2	8.8	10	1	0	10	10	9	1	PBS	lyase	HEAT-like	repeat
HEAT_UF	PF18817.1	gi|564287832|ref|YP_008874011.1|	-	0.014	15.6	0.0	0.45	10.8	0.0	2.8	2	1	1	3	3	3	0	Repeat	of	uncharacterized	protein	PH0542
API5	PF05918.11	gi|564287832|ref|YP_008874011.1|	-	0.035	12.9	0.5	29	3.3	0.0	3.3	2	1	0	3	3	3	0	Apoptosis	inhibitory	protein	5	(API5)
DNA_alkylation	PF08713.11	gi|564287832|ref|YP_008874011.1|	-	0.06	13.1	0.2	21	4.7	0.0	3.5	3	2	0	3	3	3	0	DNA	alkylation	repair	enzyme
Gp49	PF05973.14	gi|564287832|ref|YP_008874011.1|	-	0.065	13.4	0.0	46	4.3	0.0	3.5	3	1	0	3	3	3	0	Phage	derived	protein	Gp49-like	(DUF891)
Vac14_Fab1_bd	PF12755.7	gi|564287832|ref|YP_008874011.1|	-	0.1	13.2	0.0	17	6.1	0.0	3.3	3	1	0	3	3	3	0	Vacuolar	14	Fab1-binding	region
Arm	PF00514.23	gi|564287832|ref|YP_008874011.1|	-	0.14	12.3	0.5	3	8.0	0.0	3.4	3	0	0	3	3	3	0	Armadillo/beta-catenin-like	repeat
HTH_AsnC-type	PF13404.6	gi|564287757|ref|YP_008874012.1|	-	1.5e-13	50.3	1.4	2.6e-13	49.5	1.4	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287757|ref|YP_008874012.1|	-	3.6e-11	42.4	0.4	6.4e-11	41.6	0.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|564287757|ref|YP_008874012.1|	-	0.00013	21.9	0.3	0.00037	20.4	0.1	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|564287757|ref|YP_008874012.1|	-	0.00014	21.8	0.0	0.00028	20.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|564287757|ref|YP_008874012.1|	-	0.0002	21.8	0.1	0.00048	20.6	0.1	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|564287757|ref|YP_008874012.1|	-	0.00026	20.8	0.0	0.00047	20.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|564287757|ref|YP_008874012.1|	-	0.0017	18.1	0.5	0.0034	17.1	0.2	1.7	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287757|ref|YP_008874012.1|	-	0.003	17.4	0.0	0.0081	16.0	0.0	1.7	2	0	0	2	2	2	1	MarR	family
LexA_DNA_bind	PF01726.16	gi|564287757|ref|YP_008874012.1|	-	0.0031	17.3	0.0	0.016	14.9	0.0	2.1	2	0	0	2	2	2	1	LexA	DNA	binding	domain
TOBE_2	PF08402.10	gi|564287757|ref|YP_008874012.1|	-	0.019	15.1	0.6	0.1	12.8	0.1	2.0	2	0	0	2	2	2	0	TOBE	domain
HTH_23	PF13384.6	gi|564287757|ref|YP_008874012.1|	-	0.036	13.9	0.1	0.07	12.9	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
TrmB	PF01978.19	gi|564287757|ref|YP_008874012.1|	-	0.047	13.6	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_CodY	PF08222.11	gi|564287757|ref|YP_008874012.1|	-	0.058	13.0	0.0	0.16	11.6	0.0	1.7	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564287757|ref|YP_008874012.1|	-	0.066	13.2	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564287757|ref|YP_008874012.1|	-	0.086	12.4	0.1	0.22	11.1	0.0	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_28	PF13518.6	gi|564287757|ref|YP_008874012.1|	-	0.094	12.9	0.0	1.1	9.5	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|564287758|ref|YP_008874013.1|	-	1.2e-08	34.8	0.1	1.5e-08	34.4	0.1	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|564287758|ref|YP_008874013.1|	-	0.016	15.0	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Hydrolase	PF00702.26	gi|564287759|ref|YP_008874014.1|	-	6.6e-23	82.1	2.3	9e-23	81.7	2.3	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564287759|ref|YP_008874014.1|	-	5.1e-06	27.0	0.0	8e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564287759|ref|YP_008874014.1|	-	0.00016	21.6	0.2	0.01	15.6	0.4	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DNA_photolyase	PF00875.18	gi|564287759|ref|YP_008874014.1|	-	0.05	13.6	0.1	0.071	13.1	0.1	1.3	1	0	0	1	1	1	0	DNA	photolyase
CE2_N	PF17996.1	gi|564287761|ref|YP_008874016.1|	-	0.16	12.0	0.0	0.21	11.6	0.0	1.1	1	0	0	1	1	1	0	Carbohydrate	esterase	2	N-terminal
UPF0175	PF03683.13	gi|564287762|ref|YP_008874017.1|	-	8.8e-23	79.8	0.8	9.8e-23	79.7	0.8	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
zf-H3C2	PF16721.5	gi|564287762|ref|YP_008874017.1|	-	0.2	12.0	0.0	0.23	11.9	0.0	1.1	1	0	0	1	1	1	0	Zinc-finger	like,	probable	DNA-binding
DUF3368	PF11848.8	gi|564287763|ref|YP_008874018.1|	-	1.5e-12	47.1	0.0	2.6e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3368)
HypA	PF01155.19	gi|564287764|ref|YP_008874019.1|	-	0.0051	16.8	5.4	0.77	9.8	0.1	2.3	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|564287764|ref|YP_008874019.1|	-	0.016	15.2	1.9	0.016	15.2	1.9	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|564287764|ref|YP_008874019.1|	-	0.024	15.4	5.4	0.07	13.9	0.3	2.5	2	1	0	2	2	2	0	zinc-ribbon	family
Baculo_LEF5_C	PF11792.8	gi|564287764|ref|YP_008874019.1|	-	0.088	12.5	0.0	0.088	12.5	0.0	2.8	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
DUF2116	PF09889.9	gi|564287764|ref|YP_008874019.1|	-	0.11	12.6	0.6	0.23	11.5	0.6	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
RNA_POL_M_15KD	PF02150.16	gi|564287764|ref|YP_008874019.1|	-	0.14	12.1	3.8	16	5.5	0.0	3.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Lar_restr_allev	PF14354.6	gi|564287764|ref|YP_008874019.1|	-	0.9	10.0	6.4	7.9	6.9	0.2	3.4	3	1	1	4	4	4	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.7	gi|564287764|ref|YP_008874019.1|	-	2.5	8.2	12.8	1.5	8.8	2.1	3.3	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|564287764|ref|YP_008874019.1|	-	4.8	6.9	10.2	2.7	7.6	0.8	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-C2HC5	PF06221.13	gi|564287764|ref|YP_008874019.1|	-	5	7.2	6.7	0.73	9.9	0.1	2.6	2	1	1	3	3	3	0	Putative	zinc	finger	motif,	C2HC5-type
ABC_tran	PF00005.27	gi|574087274|ref|YP_008997851.1|	-	2.9e-31	108.8	0.0	4.3e-31	108.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|574087274|ref|YP_008997851.1|	-	1.2e-18	67.3	0.3	2.5e-18	66.3	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|574087274|ref|YP_008997851.1|	-	2e-06	27.9	0.0	0.00066	19.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|574087274|ref|YP_008997851.1|	-	0.00012	21.6	0.0	0.00018	21.0	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|574087274|ref|YP_008997851.1|	-	0.0002	21.6	0.1	0.0014	19.0	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|574087274|ref|YP_008997851.1|	-	0.00022	21.7	1.5	0.0005	20.5	1.5	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|574087274|ref|YP_008997851.1|	-	0.0015	17.9	0.0	0.021	14.2	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|574087274|ref|YP_008997851.1|	-	0.0019	18.1	0.1	0.0035	17.2	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|574087274|ref|YP_008997851.1|	-	0.0035	16.7	0.1	0.0071	15.6	0.1	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.29	gi|574087274|ref|YP_008997851.1|	-	0.007	16.8	0.0	0.07	13.6	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|574087274|ref|YP_008997851.1|	-	0.012	15.6	0.2	0.33	11.0	0.1	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.25	gi|574087274|ref|YP_008997851.1|	-	0.028	14.1	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Sigma54_activat	PF00158.26	gi|574087274|ref|YP_008997851.1|	-	0.045	13.5	0.0	0.45	10.2	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
SbcCD_C	PF13558.6	gi|574087274|ref|YP_008997851.1|	-	0.059	13.6	0.1	0.15	12.3	0.1	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.6	gi|574087274|ref|YP_008997851.1|	-	0.076	12.8	0.1	0.13	12.0	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.22	gi|574087274|ref|YP_008997851.1|	-	0.11	12.9	0.0	0.2	12.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|574087274|ref|YP_008997851.1|	-	0.13	12.1	0.6	0.98	9.3	0.1	2.2	2	0	0	2	2	2	0	NTPase
NB-ARC	PF00931.22	gi|574087274|ref|YP_008997851.1|	-	0.16	11.2	0.1	0.26	10.4	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|574087274|ref|YP_008997851.1|	-	0.17	11.6	0.1	0.62	9.8	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|574087274|ref|YP_008997851.1|	-	0.17	11.8	0.1	0.35	10.8	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
MMR_HSR1	PF01926.23	gi|574087274|ref|YP_008997851.1|	-	0.19	11.8	0.0	0.36	10.9	0.0	1.4	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.6	gi|574087274|ref|YP_008997851.1|	-	0.2	10.3	0.3	0.69	8.5	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|574087275|ref|YP_008997852.1|	-	7.2e-27	94.6	0.0	1.2e-26	93.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|574087275|ref|YP_008997852.1|	-	3.6e-16	59.4	0.3	6.5e-16	58.6	0.3	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|574087275|ref|YP_008997852.1|	-	0.00012	22.4	0.5	0.018	15.3	0.5	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|574087275|ref|YP_008997852.1|	-	0.0049	17.3	1.3	0.013	15.9	1.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|574087275|ref|YP_008997852.1|	-	0.0072	16.2	4.7	0.022	14.5	1.3	2.7	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|574087275|ref|YP_008997852.1|	-	0.0078	15.7	0.1	0.26	10.7	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF87	PF01935.17	gi|574087275|ref|YP_008997852.1|	-	0.011	15.8	0.2	0.028	14.5	0.2	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_7	PF12775.7	gi|574087275|ref|YP_008997852.1|	-	0.069	12.6	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ATP-synt_ab	PF00006.25	gi|574087275|ref|YP_008997852.1|	-	0.094	12.4	0.0	0.18	11.5	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|574087275|ref|YP_008997852.1|	-	0.14	11.9	0.2	0.28	10.9	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
BPD_transp_1	PF00528.22	gi|564287765|ref|YP_008874020.1|	-	3.1e-31	108.5	9.6	3.1e-31	108.5	9.6	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|564287765|ref|YP_008874020.1|	-	0.0002	21.2	0.0	0.0002	21.2	0.0	3.5	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|564287766|ref|YP_008874021.1|	-	1.7e-40	138.8	7.6	1.7e-40	138.8	7.6	1.8	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
Renin_r	PF07850.14	gi|564287766|ref|YP_008874021.1|	-	0.32	11.6	0.2	0.32	11.6	0.2	2.2	3	0	0	3	3	3	0	Renin	receptor-like	protein
SBP_bac_5	PF00496.22	gi|564287767|ref|YP_008874022.1|	-	4.2e-82	276.1	0.0	5.7e-82	275.7	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
SBP_bac_5	PF00496.22	gi|564287768|ref|YP_008874023.1|	-	4.1e-66	223.5	0.5	5.3e-66	223.1	0.5	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
GSIII_N	PF12437.8	gi|564287768|ref|YP_008874023.1|	-	0.0081	15.8	0.1	0.024	14.3	0.1	1.7	2	0	0	2	2	2	1	Glutamine	synthetase	type	III	N	terminal
TAT_signal	PF10518.9	gi|564287768|ref|YP_008874023.1|	-	0.019	14.8	1.4	0.037	13.9	1.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023010.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023010.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023010.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023010.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:19:01 2019
# [ok]