# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|344209486|ref|YP_004785663.1| - 2.9e-14 52.8 0.1 5.7e-14 51.9 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|344209486|ref|YP_004785663.1| - 6.7e-11 42.6 0.0 1.5e-10 41.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209486|ref|YP_004785663.1| - 4.5e-09 36.9 0.7 2.5e-08 34.5 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|344209486|ref|YP_004785663.1| - 6.3e-09 36.3 0.0 3.2e-08 34.1 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PaaX PF07848.12 gi|344209486|ref|YP_004785663.1| - 0.0025 18.0 0.0 0.0062 16.7 0.0 1.6 1 0 0 1 1 1 1 PaaX-like protein NACHT PF05729.12 gi|344209486|ref|YP_004785663.1| - 0.0075 16.2 0.0 0.018 15.0 0.0 1.6 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|344209486|ref|YP_004785663.1| - 0.021 14.7 0.0 0.077 12.9 0.0 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|344209486|ref|YP_004785663.1| - 0.026 13.7 0.0 0.045 12.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Microtub_bd PF16796.5 gi|344209486|ref|YP_004785663.1| - 0.067 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Microtubule binding Kinesin PF00225.23 gi|344209486|ref|YP_004785663.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain E1-E2_ATPase PF00122.20 gi|344209487|ref|YP_004785664.1| - 1.8e-51 174.2 0.5 3.4e-51 173.3 0.5 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|344209487|ref|YP_004785664.1| - 3.5e-45 154.9 4.7 5.8e-45 154.2 4.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344209487|ref|YP_004785664.1| - 8.9e-06 26.2 1.0 0.00024 21.6 0.0 3.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|344209487|ref|YP_004785664.1| - 0.0002 21.7 0.0 0.00078 19.8 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|344209487|ref|YP_004785664.1| - 0.0011 18.8 0.7 0.0041 16.9 0.5 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase GST_C_2 PF13410.6 gi|344209487|ref|YP_004785664.1| - 0.11 12.6 0.0 0.46 10.5 0.0 2.0 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain ApbE PF02424.15 gi|344209488|ref|YP_004785665.1| - 8.3e-09 35.3 0.0 1.3e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 ApbE family Abhydrolase_1 PF00561.20 gi|344209490|ref|YP_004785667.1| - 0.0046 16.6 0.5 0.3 10.7 0.0 2.7 3 0 0 3 3 3 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|344209490|ref|YP_004785667.1| - 4.7 7.7 19.7 3.1e+02 1.8 19.8 2.8 1 1 1 2 2 2 0 Alpha/beta hydrolase family HTH_5 PF01022.20 gi|344209491|ref|YP_004785668.1| - 3.8e-13 49.1 0.1 1.8e-12 46.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|344209491|ref|YP_004785668.1| - 4.6e-09 36.2 0.0 9.1e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344209491|ref|YP_004785668.1| - 3.7e-05 23.2 0.2 9.4e-05 21.9 0.2 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|344209491|ref|YP_004785668.1| - 5.4e-05 23.1 0.2 7.2e-05 22.7 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|344209491|ref|YP_004785668.1| - 0.0031 17.4 0.0 0.012 15.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|344209491|ref|YP_004785668.1| - 0.0075 16.4 0.0 0.013 15.6 0.0 1.4 2 0 0 2 2 2 1 DprA winged helix domain HTH_IclR PF09339.10 gi|344209491|ref|YP_004785668.1| - 0.029 14.2 0.1 0.074 12.9 0.0 1.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF4364 PF14277.6 gi|344209491|ref|YP_004785668.1| - 0.031 14.0 0.2 0.037 13.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_41 PF14502.6 gi|344209491|ref|YP_004785668.1| - 0.051 13.3 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|344209491|ref|YP_004785668.1| - 0.058 13.7 0.0 0.064 13.6 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HxlR PF01638.17 gi|344209491|ref|YP_004785668.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Cyd_oper_YbgE PF09600.10 gi|344209492|ref|YP_004785669.1| - 0.0016 18.8 0.4 0.0018 18.6 0.4 1.2 1 0 0 1 1 1 1 Cyd operon protein YbgE (Cyd_oper_YbgE) Cdc6_C PF09079.11 gi|344209494|ref|YP_004785671.1| - 1.1e-11 44.5 0.2 1.4e-11 44.2 0.2 1.1 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain TrmB PF01978.19 gi|344209495|ref|YP_004785672.1| - 9.7e-08 31.8 0.0 2.3e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344209495|ref|YP_004785672.1| - 0.006 16.4 0.3 0.023 14.5 0.0 2.1 3 0 0 3 3 3 1 IclR helix-turn-helix domain Spiralin PF05215.13 gi|344209495|ref|YP_004785672.1| - 0.049 13.0 0.0 0.082 12.2 0.0 1.3 1 0 0 1 1 1 0 Spiralin HTH_DeoR PF08220.12 gi|344209495|ref|YP_004785672.1| - 0.061 13.1 0.1 0.14 11.9 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain F-112 PF09645.10 gi|344209495|ref|YP_004785672.1| - 0.17 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 F-112 protein UPF0175 PF03683.13 gi|344209496|ref|YP_004785673.1| - 1.1e-15 57.0 0.4 1.7e-15 56.5 0.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|344209496|ref|YP_004785673.1| - 0.0058 16.5 0.0 0.018 15.0 0.0 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|344209496|ref|YP_004785673.1| - 0.068 13.6 0.1 0.088 13.2 0.1 1.2 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH PAS_8 PF13188.7 gi|344209497|ref|YP_004785674.1| - 0.043 13.8 0.1 0.1 12.6 0.1 1.7 1 1 0 1 1 1 0 PAS domain AAA_31 PF13614.6 gi|344209501|ref|YP_004785678.1| - 5.7e-20 72.0 0.0 9.3e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344209501|ref|YP_004785678.1| - 1.5e-14 54.1 0.0 2.4e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|344209501|ref|YP_004785678.1| - 4.7e-05 22.8 0.0 0.00076 18.8 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|344209501|ref|YP_004785678.1| - 8.3e-05 22.2 0.0 0.0011 18.5 0.0 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|344209501|ref|YP_004785678.1| - 0.00023 20.7 0.0 0.00038 20.0 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|344209501|ref|YP_004785678.1| - 0.0017 17.6 0.0 0.0024 17.1 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|344209501|ref|YP_004785678.1| - 0.054 12.9 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SpoIIIAH PF12685.7 gi|344209502|ref|YP_004785679.1| - 0.65 9.8 10.6 0.77 9.6 10.6 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Nop14 PF04147.12 gi|344209502|ref|YP_004785679.1| - 1.5 6.9 15.1 1.5 6.9 15.1 1.1 1 0 0 1 1 1 0 Nop14-like family Apt1 PF10351.9 gi|344209502|ref|YP_004785679.1| - 1.9 7.2 6.6 2 7.2 6.6 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Sporozoite_P67 PF05642.11 gi|344209502|ref|YP_004785679.1| - 4.6 5.2 12.7 5.9 4.8 12.7 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen CDC45 PF02724.14 gi|344209502|ref|YP_004785679.1| - 5.5 5.2 10.9 5.9 5.1 10.9 1.1 1 0 0 1 1 1 0 CDC45-like protein SDA1 PF05285.12 gi|344209502|ref|YP_004785679.1| - 6.4 6.1 17.1 7 6.0 17.1 1.1 1 0 0 1 1 1 0 SDA1 GREB1 PF15782.5 gi|344209502|ref|YP_004785679.1| - 9.4 3.2 5.6 9.5 3.2 5.6 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer PI3K_1B_p101 PF10486.9 gi|344209502|ref|YP_004785679.1| - 9.6 3.8 8.9 10 3.7 8.9 1.1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit MFS_3 PF05977.13 gi|344209506|ref|YP_004785683.1| - 0.00023 19.7 0.3 0.00027 19.5 0.3 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector UvrD-helicase PF00580.21 gi|344209507|ref|YP_004785684.1| - 2.3e-47 162.0 0.0 4.3e-47 161.2 0.0 1.5 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|344209507|ref|YP_004785684.1| - 2.1e-33 116.2 0.0 8.3e-21 74.7 0.0 2.3 1 1 1 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|344209507|ref|YP_004785684.1| - 5.1e-24 85.3 0.0 6.6e-23 81.7 0.0 2.5 2 1 0 2 2 2 1 AAA domain UvrD_C_2 PF13538.6 gi|344209507|ref|YP_004785684.1| - 1.6e-10 40.6 0.0 0.0003 20.6 0.0 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.7 gi|344209507|ref|YP_004785684.1| - 3.1e-09 37.1 0.5 1.2e-07 31.9 0.4 2.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|344209507|ref|YP_004785684.1| - 7e-05 22.7 0.3 13 5.4 0.0 4.3 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|344209507|ref|YP_004785684.1| - 0.00014 21.6 0.0 0.0024 17.6 0.0 2.7 4 0 0 4 4 4 1 AAA domain AAA_12 PF13087.6 gi|344209507|ref|YP_004785684.1| - 0.1 12.2 0.0 1.4 8.5 0.0 2.6 2 2 0 2 2 2 0 AAA domain Cas_Cas4 PF01930.17 gi|344209507|ref|YP_004785684.1| - 0.16 12.1 0.0 0.38 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF83 SicP-binding PF09119.10 gi|344209507|ref|YP_004785684.1| - 0.17 11.9 0.0 0.43 10.6 0.0 1.7 1 0 0 1 1 1 0 SicP binding PDDEXK_1 PF12705.7 gi|344209508|ref|YP_004785685.1| - 5.8e-11 42.8 0.0 2.8e-10 40.6 0.0 2.3 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily CutA1 PF03091.15 gi|344209509|ref|YP_004785686.1| - 2.2e-28 98.0 0.0 2.4e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF4191 PF13829.6 gi|344209510|ref|YP_004785687.1| - 1.2 8.4 2.9 1.4 8.2 2.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Glyoxalase_6 PF18029.1 gi|344209512|ref|YP_004785689.1| - 3.7e-19 69.5 0.0 4.2e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Crystall_2 PF09076.10 gi|344209514|ref|YP_004785691.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Beta/Gamma crystallin TOBE_2 PF08402.10 gi|344209514|ref|YP_004785691.1| - 0.23 11.7 1.3 3.3 8.0 0.9 2.0 1 1 1 2 2 2 0 TOBE domain Tropomyosin PF00261.20 gi|344209515|ref|YP_004785692.1| - 0.00068 19.1 7.7 0.0011 18.4 7.7 1.3 1 0 0 1 1 1 1 Tropomyosin Baculo_PEP_C PF04513.12 gi|344209515|ref|YP_004785692.1| - 0.0075 16.3 0.9 0.013 15.5 0.7 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Jnk-SapK_ap_N PF09744.9 gi|344209515|ref|YP_004785692.1| - 0.0097 16.1 2.2 0.017 15.3 2.2 1.4 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 Herpes_UL25 PF01499.16 gi|344209515|ref|YP_004785692.1| - 0.015 13.9 2.1 0.018 13.6 2.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family DASH_Spc19 PF08287.11 gi|344209515|ref|YP_004785692.1| - 0.016 15.1 3.7 0.029 14.3 3.7 1.4 1 0 0 1 1 1 0 Spc19 MCC-bdg_PDZ PF10506.9 gi|344209515|ref|YP_004785692.1| - 0.028 14.5 0.1 0.89 9.6 0.0 2.6 2 1 0 3 3 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome ABC_tran_CTD PF16326.5 gi|344209515|ref|YP_004785692.1| - 0.031 14.5 9.0 0.43 10.8 2.5 3.2 2 1 1 3 3 3 0 ABC transporter C-terminal domain Spc7 PF08317.11 gi|344209515|ref|YP_004785692.1| - 0.045 12.6 5.3 0.067 12.1 5.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Synaptobrevin PF00957.21 gi|344209515|ref|YP_004785692.1| - 0.11 12.2 1.2 0.22 11.3 1.2 1.5 1 0 0 1 1 1 0 Synaptobrevin LPP PF04728.13 gi|344209515|ref|YP_004785692.1| - 0.13 12.6 0.6 0.13 12.6 0.6 2.9 1 1 1 3 3 3 0 Lipoprotein leucine-zipper CSN5_C PF18323.1 gi|344209515|ref|YP_004785692.1| - 0.36 11.8 2.3 1.2 10.1 2.2 2.0 1 1 0 1 1 1 0 Cop9 signalosome subunit 5 C-terminal domain DUF1664 PF07889.12 gi|344209515|ref|YP_004785692.1| - 0.71 9.9 5.7 1.3 9.0 0.3 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|344209515|ref|YP_004785692.1| - 0.76 9.1 10.2 1.4 8.2 10.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) BST2 PF16716.5 gi|344209515|ref|YP_004785692.1| - 0.91 10.1 6.8 3.1 8.5 6.2 2.0 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Mce4_CUP1 PF11887.8 gi|344209515|ref|YP_004785692.1| - 1.9 7.9 6.3 3.1 7.2 6.3 1.2 1 0 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative XhlA PF10779.9 gi|344209515|ref|YP_004785692.1| - 4.3 7.6 7.0 28 5.0 0.6 3.2 2 1 1 3 3 3 0 Haemolysin XhlA PadR PF03551.14 gi|344209519|ref|YP_004785696.1| - 3.7e-13 49.2 0.1 4.5e-13 49.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|344209519|ref|YP_004785696.1| - 0.0053 16.5 0.0 0.0073 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|344209519|ref|YP_004785696.1| - 0.007 16.3 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|344209519|ref|YP_004785696.1| - 0.0095 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix FUR PF01475.19 gi|344209519|ref|YP_004785696.1| - 0.017 15.3 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family RTP PF02334.16 gi|344209519|ref|YP_004785696.1| - 0.02 15.5 0.0 0.032 14.9 0.0 1.3 1 1 0 1 1 1 0 Replication terminator protein HTH_34 PF13601.6 gi|344209519|ref|YP_004785696.1| - 0.1 12.8 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|344209519|ref|YP_004785696.1| - 0.18 11.6 0.0 0.26 11.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|344209520|ref|YP_004785697.1| - 0.0012 18.4 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|344209520|ref|YP_004785697.1| - 0.0019 18.1 0.2 0.0028 17.6 0.2 1.4 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Mnd1 PF03962.15 gi|344209520|ref|YP_004785697.1| - 0.0042 17.3 0.0 0.0049 17.1 0.0 1.1 1 0 0 1 1 1 1 Mnd1 HTH domain MarR_2 PF12802.7 gi|344209520|ref|YP_004785697.1| - 0.0043 16.9 0.0 0.0043 16.9 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF505 PF04458.12 gi|344209520|ref|YP_004785697.1| - 0.0063 14.9 0.0 0.0068 14.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|344209520|ref|YP_004785697.1| - 0.011 15.8 0.0 0.011 15.8 0.0 1.0 1 0 0 1 1 1 0 Replication-relaxation HTH_Crp_2 PF13545.6 gi|344209520|ref|YP_004785697.1| - 0.015 15.2 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|344209520|ref|YP_004785697.1| - 0.033 14.3 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|344209520|ref|YP_004785697.1| - 0.04 13.9 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|344209520|ref|YP_004785697.1| - 0.18 11.5 0.0 0.2 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) MRF_C2 PF13888.6 gi|344209523|ref|YP_004785700.1| - 0.022 14.7 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 Myelin gene regulatory factor C-terminal domain 2 DUF4878 PF12870.7 gi|344209524|ref|YP_004785701.1| - 0.004 17.4 0.1 0.0083 16.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4878) Radical_SAM PF04055.21 gi|344209525|ref|YP_004785702.1| - 4.8e-08 33.6 0.1 8.4e-07 29.5 0.1 2.7 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|344209526|ref|YP_004785703.1| - 3.1e-10 40.7 0.0 1.9e-09 38.1 0.0 2.3 2 2 1 3 3 3 1 Radical SAM superfamily Transcrip_reg PF01709.20 gi|344209526|ref|YP_004785703.1| - 0.14 11.6 0.2 0.29 10.5 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator META PF03724.16 gi|344209527|ref|YP_004785704.1| - 4.1e-05 23.5 1.8 0.056 13.4 0.4 2.8 2 1 0 2 2 2 2 META domain HTH_20 PF12840.7 gi|344209528|ref|YP_004785705.1| - 3.5e-14 52.6 0.1 7.2e-14 51.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344209528|ref|YP_004785705.1| - 4e-08 33.0 0.1 1.7e-07 31.0 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344209528|ref|YP_004785705.1| - 1.3e-07 31.3 0.0 2.1e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|344209528|ref|YP_004785705.1| - 9e-06 25.2 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|344209528|ref|YP_004785705.1| - 0.00094 19.1 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|344209528|ref|YP_004785705.1| - 0.024 14.2 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.6 gi|344209528|ref|YP_004785705.1| - 0.024 15.1 0.0 0.045 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain COG5 PF10392.9 gi|344209528|ref|YP_004785705.1| - 0.037 14.2 0.0 0.11 12.7 0.1 1.6 2 0 0 2 2 2 0 Golgi transport complex subunit 5 TrmB PF01978.19 gi|344209528|ref|YP_004785705.1| - 0.048 13.5 0.0 0.084 12.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 gi|344209528|ref|YP_004785705.1| - 0.11 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_11 PF08279.12 gi|344209528|ref|YP_004785705.1| - 0.15 12.1 0.1 0.25 11.3 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF2513 PF10711.9 gi|344209528|ref|YP_004785705.1| - 0.2 11.9 0.0 0.33 11.3 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Wzy_C_2 PF11846.8 gi|344209530|ref|YP_004785707.1| - 0.3 11.0 2.5 0.19 11.7 0.9 1.4 2 0 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal PHD_like PF12910.7 gi|344209533|ref|YP_004785710.1| - 0.016 15.2 0.0 0.021 14.8 0.0 1.1 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system Frankia_peptide PF14407.6 gi|344209533|ref|YP_004785710.1| - 0.065 13.2 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. HicA_toxin PF07927.12 gi|344209534|ref|YP_004785711.1| - 7.7e-13 48.3 0.0 9.6e-13 48.0 0.0 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF4880 PF16220.5 gi|344209534|ref|YP_004785711.1| - 0.38 10.7 2.5 1.6 8.7 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4880) Defensin_1 PF00323.19 gi|344209536|ref|YP_004785713.1| - 0.11 13.1 1.1 10 6.8 0.1 2.3 2 0 0 2 2 2 0 Mammalian defensin Fic PF02661.18 gi|344209538|ref|YP_004785715.1| - 6.3e-08 33.4 0.0 1.7e-07 32.0 0.0 1.7 1 1 0 1 1 1 1 Fic/DOC family OrfB_IS605 PF01385.19 gi|344209541|ref|YP_004785718.1| - 8.7e-18 64.7 0.1 6.6e-17 61.8 0.0 2.4 2 1 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|344209541|ref|YP_004785718.1| - 1.8e-17 63.0 2.3 3.9e-17 61.9 1.6 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain ArfGap PF01412.18 gi|344209541|ref|YP_004785718.1| - 0.092 12.8 1.4 0.29 11.2 1.4 1.8 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf zf_Rg PF17915.1 gi|344209541|ref|YP_004785718.1| - 0.12 11.8 2.9 0.49 9.8 2.2 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger Lon_C PF05362.13 gi|344209548|ref|YP_004785725.1| - 6.8e-08 32.3 0.1 1.1e-07 31.6 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|344209548|ref|YP_004785725.1| - 2.6e-05 24.1 0.0 7.6e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase TrbC PF04956.13 gi|344209549|ref|YP_004785726.1| - 0.014 15.6 4.9 0.031 14.5 4.9 1.7 1 1 0 1 1 1 0 TrbC/VIRB2 family DUF4134 PF13572.6 gi|344209549|ref|YP_004785726.1| - 0.033 14.5 2.0 0.094 13.0 2.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) Transthyretin PF00576.21 gi|344209550|ref|YP_004785727.1| - 0.0049 17.5 0.2 0.26 12.0 0.0 2.9 3 0 0 3 3 3 1 HIUase/Transthyretin family Big_1 PF02369.16 gi|344209550|ref|YP_004785727.1| - 0.0055 16.7 0.6 0.0055 16.7 0.6 2.0 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) AAA_10 PF12846.7 gi|344209551|ref|YP_004785728.1| - 4.1e-07 29.2 0.6 0.0031 16.5 0.0 2.6 3 0 0 3 3 3 2 AAA-like domain DUF87 PF01935.17 gi|344209551|ref|YP_004785728.1| - 1.9e-06 28.1 0.0 1.9e-06 28.1 0.0 2.8 3 0 0 3 3 3 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|344209551|ref|YP_004785728.1| - 0.0015 18.8 0.4 0.38 11.0 0.1 2.9 3 0 0 3 3 3 1 AAA domain DEAD PF00270.29 gi|344209551|ref|YP_004785728.1| - 0.014 15.2 0.0 2.5 7.9 0.0 2.7 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_29 PF13555.6 gi|344209551|ref|YP_004785728.1| - 0.025 14.3 0.0 0.075 12.8 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|344209551|ref|YP_004785728.1| - 0.026 14.9 0.0 4.4 7.7 0.0 2.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|344209551|ref|YP_004785728.1| - 0.038 13.3 0.0 0.092 12.1 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Mg_chelatase PF01078.21 gi|344209551|ref|YP_004785728.1| - 0.042 13.2 0.0 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|344209551|ref|YP_004785728.1| - 0.05 14.0 0.6 2.5 8.4 0.0 3.0 3 1 0 3 3 3 0 AAA ATPase domain SbcD_C PF12320.8 gi|344209551|ref|YP_004785728.1| - 0.063 13.6 0.9 0.25 11.6 0.9 2.1 1 0 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain PIN PF01850.21 gi|344209553|ref|YP_004785730.1| - 2.9e-09 37.5 0.0 3.6e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 PIN domain YmgD PF16456.5 gi|344209553|ref|YP_004785730.1| - 0.0053 16.8 0.0 0.032 14.3 0.0 1.9 1 1 1 2 2 2 1 YmgD protein DUF3618 PF12277.8 gi|344209553|ref|YP_004785730.1| - 0.13 12.6 2.2 0.21 11.9 2.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) VAPB_antitox PF02697.14 gi|344209554|ref|YP_004785731.1| - 3.6e-12 46.9 3.8 4.8e-12 46.5 3.8 1.2 1 0 0 1 1 1 1 Putative antitoxin Cupin_4 PF08007.12 gi|344209554|ref|YP_004785731.1| - 0.046 13.2 0.3 0.053 13.0 0.3 1.1 1 0 0 1 1 1 0 Cupin superfamily protein HupH_C PF04809.13 gi|344209554|ref|YP_004785731.1| - 0.048 13.4 0.1 6 6.6 0.0 2.5 3 0 0 3 3 3 0 HupH hydrogenase expression protein, C-terminal conserved region zf-ribbon_3 PF13248.6 gi|344209556|ref|YP_004785733.1| - 0.62 9.6 10.7 0.78 9.2 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Rhodanese_C PF12368.8 gi|344209556|ref|YP_004785733.1| - 1.4 9.3 10.2 0.75 10.2 3.2 2.4 2 0 0 2 2 2 0 Rhodanase C-terminal PRCC PF10253.9 gi|344209558|ref|YP_004785735.1| - 0.018 15.8 0.4 0.022 15.5 0.4 1.1 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Shisa PF13908.6 gi|344209558|ref|YP_004785735.1| - 0.032 14.5 0.1 0.051 13.8 0.1 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator REPA_OB_2 PF16900.5 gi|344209559|ref|YP_004785736.1| - 0.0017 18.2 0.0 0.0046 16.9 0.0 1.7 2 0 0 2 2 2 1 Replication protein A OB domain tRNA_anti-codon PF01336.25 gi|344209559|ref|YP_004785736.1| - 0.0021 18.0 0.1 0.0039 17.1 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|344209559|ref|YP_004785736.1| - 0.2 11.4 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 TrmB PF01978.19 gi|344209560|ref|YP_004785737.1| - 1.2e-08 34.7 0.9 4.4e-08 32.9 0.2 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344209560|ref|YP_004785737.1| - 4.7e-05 23.4 0.5 0.0001 22.3 0.3 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344209560|ref|YP_004785737.1| - 7.6e-05 22.2 0.0 0.006 16.1 0.0 3.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding F-112 PF09645.10 gi|344209560|ref|YP_004785737.1| - 0.00084 19.4 0.0 0.59 10.3 0.0 2.2 2 0 0 2 2 2 2 F-112 protein HTH_IclR PF09339.10 gi|344209560|ref|YP_004785737.1| - 0.0041 16.9 1.0 0.014 15.1 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|344209560|ref|YP_004785737.1| - 0.006 17.1 0.1 0.016 15.7 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|344209560|ref|YP_004785737.1| - 0.0068 16.3 0.8 0.018 15.0 0.1 2.1 2 1 1 3 3 3 1 MarR family HTH_5 PF01022.20 gi|344209560|ref|YP_004785737.1| - 0.029 14.2 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|344209560|ref|YP_004785737.1| - 0.18 12.0 0.2 7.4 6.8 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|344209563|ref|YP_004785740.1| - 8.5e-07 28.8 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.6 gi|344209563|ref|YP_004785740.1| - 0.02 14.9 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|344209563|ref|YP_004785740.1| - 0.043 13.6 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.21 gi|344209563|ref|YP_004785740.1| - 0.051 13.2 0.0 0.071 12.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|344209563|ref|YP_004785740.1| - 0.075 13.0 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344209563|ref|YP_004785740.1| - 0.086 12.7 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_CodY PF08222.11 gi|344209563|ref|YP_004785740.1| - 0.093 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain MarR_2 PF12802.7 gi|344209563|ref|YP_004785740.1| - 0.12 12.3 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 MarR family Glyoxalase PF00903.25 gi|344209564|ref|YP_004785741.1| - 1e-06 28.9 0.3 1.6e-06 28.4 0.3 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|344209564|ref|YP_004785741.1| - 0.013 15.7 0.4 0.029 14.6 0.4 1.6 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|344209564|ref|YP_004785741.1| - 0.02 15.0 3.5 1.7 8.7 3.5 2.2 1 1 0 1 1 1 0 Glyoxalase-like domain PIN PF01850.21 gi|344209566|ref|YP_004785743.1| - 1.2e-17 64.6 0.3 1.3e-17 64.4 0.3 1.0 1 0 0 1 1 1 1 PIN domain TrwB_AAD_bind PF10412.9 gi|344209568|ref|YP_004785745.1| - 4.1e-17 62.2 0.0 5.5e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|344209568|ref|YP_004785745.1| - 9.3e-12 45.0 0.4 1.8e-11 44.1 0.0 1.7 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|344209568|ref|YP_004785745.1| - 0.00078 18.4 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer D123 PF07065.14 gi|344209568|ref|YP_004785745.1| - 0.76 8.9 0.0 0.76 8.9 0.0 2.2 2 0 0 2 2 2 0 D123 HlyE PF06109.13 gi|344209571|ref|YP_004785748.1| - 0.031 13.6 0.0 0.035 13.4 0.0 1.1 1 0 0 1 1 1 0 Haemolysin E (HlyE) SbcCD_C PF13558.6 gi|344209572|ref|YP_004785749.1| - 8.2e-09 35.6 0.0 1.8e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Spc7 PF08317.11 gi|344209572|ref|YP_004785749.1| - 2.6e-06 26.5 42.4 0.00036 19.5 19.5 2.9 2 1 0 2 2 2 2 Spc7 kinetochore protein AAA_13 PF13166.6 gi|344209572|ref|YP_004785749.1| - 6.9e-06 25.0 26.9 1.6e-05 23.8 2.3 3.5 1 1 1 2 2 2 1 AAA domain CENP-F_leu_zip PF10473.9 gi|344209572|ref|YP_004785749.1| - 6.1e-05 23.1 42.5 0.082 12.9 12.6 3.7 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2326 PF10088.9 gi|344209572|ref|YP_004785749.1| - 0.00011 22.0 0.6 0.00074 19.3 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised protein conserved in bacteria (DUF2326) Tropomyosin_1 PF12718.7 gi|344209572|ref|YP_004785749.1| - 0.00025 21.2 21.9 0.00025 21.2 21.9 3.4 2 1 1 3 3 3 1 Tropomyosin like TPR_MLP1_2 PF07926.12 gi|344209572|ref|YP_004785749.1| - 0.00048 20.2 37.4 0.0091 16.1 1.1 4.4 3 1 1 4 4 4 2 TPR/MLP1/MLP2-like protein CALCOCO1 PF07888.11 gi|344209572|ref|YP_004785749.1| - 0.0019 17.2 16.8 0.0019 17.2 16.8 2.2 1 1 1 2 2 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like THOC7 PF05615.13 gi|344209572|ref|YP_004785749.1| - 0.0091 16.3 9.3 0.0091 16.3 9.3 4.3 1 1 3 4 4 3 1 Tho complex subunit 7 DUF1664 PF07889.12 gi|344209572|ref|YP_004785749.1| - 0.0093 16.0 27.7 0.12 12.4 1.0 4.3 2 2 3 5 5 5 2 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|344209572|ref|YP_004785749.1| - 0.023 14.9 28.9 0.042 14.1 0.8 4.5 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain zf-Di19 PF05605.12 gi|344209572|ref|YP_004785749.1| - 0.025 14.9 0.2 7.3 7.0 0.1 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF4140 PF13600.6 gi|344209572|ref|YP_004785749.1| - 0.027 14.9 0.7 0.027 14.9 0.7 5.1 4 2 2 6 6 5 0 N-terminal domain of unknown function (DUF4140) FlaC_arch PF05377.11 gi|344209572|ref|YP_004785749.1| - 0.055 13.9 1.1 0.055 13.9 1.1 6.5 4 2 1 5 5 5 0 Flagella accessory protein C (FlaC) Prefoldin_2 PF01920.20 gi|344209572|ref|YP_004785749.1| - 0.058 13.3 39.8 0.12 12.4 1.6 5.3 4 2 1 5 5 5 0 Prefoldin subunit DUF3450 PF11932.8 gi|344209572|ref|YP_004785749.1| - 0.16 11.3 41.1 0.24 10.7 1.3 4.3 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) IBV_3A PF03617.13 gi|344209572|ref|YP_004785749.1| - 0.17 11.9 0.5 0.41 10.7 0.5 1.5 1 0 0 1 1 1 0 IBV 3A protein zf-ribbon_3 PF13248.6 gi|344209572|ref|YP_004785749.1| - 0.21 11.0 5.4 1.6 8.3 5.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain BLOC1_2 PF10046.9 gi|344209572|ref|YP_004785749.1| - 0.22 11.8 31.2 0.22 11.8 0.9 4.4 3 1 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 L31 PF09784.9 gi|344209572|ref|YP_004785749.1| - 0.25 11.8 5.5 0.37 11.2 0.0 2.9 2 1 0 3 3 3 0 Mitochondrial ribosomal protein L31 AAA_23 PF13476.6 gi|344209572|ref|YP_004785749.1| - 0.35 11.3 55.8 1.8e+04 -17.3 55.8 4.4 1 1 0 1 1 0 0 AAA domain ZapB PF06005.12 gi|344209572|ref|YP_004785749.1| - 0.37 11.3 47.0 0.14 12.6 4.5 4.9 2 2 2 4 4 3 0 Cell division protein ZapB dCache_1 PF02743.18 gi|344209572|ref|YP_004785749.1| - 0.47 10.2 3.9 0.71 9.6 0.1 2.5 1 1 1 2 2 2 0 Cache domain FapA PF03961.13 gi|344209572|ref|YP_004785749.1| - 1.1 7.8 25.3 1.9 7.0 11.0 2.9 2 1 0 2 2 2 0 Flagellar Assembly Protein A GCN5L1 PF06320.13 gi|344209572|ref|YP_004785749.1| - 1.3 9.2 17.8 3.2 7.9 0.2 3.9 2 2 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) MCPsignal PF00015.21 gi|344209572|ref|YP_004785749.1| - 1.5 8.6 10.6 3 7.6 0.5 2.9 2 1 1 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain PI3K_P85_iSH2 PF16454.5 gi|344209572|ref|YP_004785749.1| - 2 8.0 37.9 0.12 11.9 0.5 4.3 2 2 2 4 4 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF3584 PF12128.8 gi|344209572|ref|YP_004785749.1| - 2.2 5.7 37.3 53 1.1 37.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DivIC PF04977.15 gi|344209572|ref|YP_004785749.1| - 3.6 7.4 36.7 1.8 8.4 3.4 5.2 3 1 2 5 5 5 0 Septum formation initiator YtxH PF12732.7 gi|344209572|ref|YP_004785749.1| - 4.7 7.8 11.7 2 9.0 0.8 3.8 3 2 0 3 3 3 0 YtxH-like protein FliD_N PF02465.18 gi|344209572|ref|YP_004785749.1| - 4.7 8.0 10.7 6 7.6 0.8 3.6 2 2 1 3 3 3 0 Flagellar hook-associated protein 2 N-terminus NPV_P10 PF05531.12 gi|344209572|ref|YP_004785749.1| - 4.9 7.7 20.0 1.8 9.1 1.1 4.6 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein PilJ PF13675.6 gi|344209572|ref|YP_004785749.1| - 5.4 7.1 16.8 5.6 7.0 1.4 3.9 3 1 1 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term MscS_porin PF12795.7 gi|344209572|ref|YP_004785749.1| - 6.3 6.3 41.2 12 5.4 16.7 3.3 2 2 0 2 2 2 0 Mechanosensitive ion channel porin domain LMBR1 PF04791.16 gi|344209572|ref|YP_004785749.1| - 6.6 5.5 19.1 2.1 7.1 3.3 2.4 1 1 0 2 2 2 0 LMBR1-like membrane protein DUF5082 PF16888.5 gi|344209572|ref|YP_004785749.1| - 7.1 6.9 32.0 0.16 12.2 13.6 3.5 2 2 0 2 2 2 0 Domain of unknown function (DUF5082) APG6_N PF17675.1 gi|344209572|ref|YP_004785749.1| - 7.6 7.1 53.9 2.6 8.6 3.1 3.9 2 2 1 3 3 3 0 Apg6 coiled-coil region Laminin_II PF06009.12 gi|344209572|ref|YP_004785749.1| - 7.7 6.5 28.2 0.72 9.9 5.6 4.5 2 2 2 4 4 4 0 Laminin Domain II WXG100 PF06013.12 gi|344209572|ref|YP_004785749.1| - 9 6.6 15.1 8.3 6.7 1.0 4.7 4 1 1 5 5 5 0 Proteins of 100 residues with WXG HTH_20 PF12840.7 gi|344209575|ref|YP_004785752.1| - 0.00036 20.5 0.1 0.00057 19.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_1 PF00126.27 gi|344209575|ref|YP_004785752.1| - 0.0039 17.1 0.0 0.0079 16.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.19 gi|344209575|ref|YP_004785752.1| - 0.013 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|344209575|ref|YP_004785752.1| - 0.018 14.6 0.1 0.029 13.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding VAPB_antitox PF02697.14 gi|344209576|ref|YP_004785753.1| - 1.3e-13 51.5 4.7 1.7e-13 51.1 4.7 1.2 1 0 0 1 1 1 1 Putative antitoxin EURL PF06937.11 gi|344209576|ref|YP_004785753.1| - 0.027 13.9 0.1 0.028 13.9 0.1 1.1 1 0 0 1 1 1 0 EURL protein PIN PF01850.21 gi|344209577|ref|YP_004785754.1| - 1e-10 42.2 0.0 1.2e-10 41.9 0.0 1.0 1 0 0 1 1 1 1 PIN domain PCNA_N PF00705.18 gi|344209579|ref|YP_004785756.1| - 0.00079 19.1 0.0 0.0018 18.0 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain SprT-like PF10263.9 gi|344209581|ref|YP_004785758.1| - 0.15 11.9 0.1 0.59 10.0 0.1 1.8 2 0 0 2 2 2 0 SprT-like family Aminopep PF10023.9 gi|344209581|ref|YP_004785758.1| - 0.44 9.9 2.9 0.79 9.0 0.1 2.0 2 0 0 2 2 2 0 Putative aminopeptidase zf-ribbon_3 PF13248.6 gi|344209581|ref|YP_004785758.1| - 0.59 9.6 2.4 0.64 9.5 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Gemini_AC4_5 PF04807.12 gi|344209582|ref|YP_004785759.1| - 0.098 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Geminivirus AC4/5 conserved region PQQ_3 PF13570.6 gi|344209583|ref|YP_004785760.1| - 8e-34 115.3 21.0 8.1e-08 32.5 0.2 8.1 7 1 0 7 7 7 6 PQQ-like domain PQQ_2 PF13360.6 gi|344209583|ref|YP_004785760.1| - 3e-31 108.8 12.8 1.4e-18 67.4 0.3 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|344209583|ref|YP_004785760.1| - 2.7e-16 58.6 15.8 1.2e-05 25.0 0.0 6.4 7 1 0 7 7 7 4 PQQ enzyme repeat WD40_like PF17005.5 gi|344209583|ref|YP_004785760.1| - 0.06 12.7 0.0 0.14 11.4 0.0 1.5 2 0 0 2 2 2 0 WD40-like domain Alginate_lyase PF05426.12 gi|344209584|ref|YP_004785761.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Alginate lyase Ion_trans_2 PF07885.16 gi|344209588|ref|YP_004785765.1| - 0.027 14.4 1.7 0.031 14.3 1.7 1.1 1 0 0 1 1 1 0 Ion channel NPV_P10 PF05531.12 gi|344209589|ref|YP_004785766.1| - 0.021 15.3 0.4 0.03 14.8 0.4 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein ArsR PF09824.9 gi|344209589|ref|YP_004785766.1| - 0.15 11.6 0.4 1.1 8.9 0.0 1.9 1 1 1 2 2 2 0 ArsR transcriptional regulator DUF2065 PF09838.9 gi|344209594|ref|YP_004785771.1| - 0.011 15.7 0.0 1.5 8.9 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) SWIM PF04434.17 gi|344209595|ref|YP_004785772.1| - 0.0066 16.1 0.1 0.0066 16.1 0.1 2.4 2 1 0 2 2 2 1 SWIM zinc finger TFIIB PF00382.19 gi|344209596|ref|YP_004785773.1| - 3.8e-17 62.1 2.3 3.9e-09 36.4 1.7 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344209596|ref|YP_004785773.1| - 3e-10 39.4 3.6 3e-10 39.4 3.6 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|344209596|ref|YP_004785773.1| - 0.0021 17.9 0.4 0.0049 16.8 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_23 PF13384.6 gi|344209596|ref|YP_004785773.1| - 0.0074 16.1 0.6 1.7 8.5 0.0 3.5 3 0 0 3 3 3 1 Homeodomain-like domain EFF-AFF PF14884.6 gi|344209596|ref|YP_004785773.1| - 0.01 14.0 0.0 0.014 13.5 0.0 1.1 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen XRCC4 PF06632.12 gi|344209596|ref|YP_004785773.1| - 0.019 13.8 2.3 0.026 13.4 2.3 1.1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 DZR PF12773.7 gi|344209596|ref|YP_004785773.1| - 0.068 13.2 1.4 0.15 12.1 1.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|344209596|ref|YP_004785773.1| - 0.1 12.0 3.2 0.32 10.5 3.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|344209596|ref|YP_004785773.1| - 0.11 12.4 1.9 0.16 11.9 0.7 1.8 2 0 0 2 2 2 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|344209596|ref|YP_004785773.1| - 1.1 9.4 5.2 3.7 7.8 0.8 2.5 1 1 2 3 3 3 0 Zinc ribbon domain HicB_lk_antitox PF15919.5 gi|344209598|ref|YP_004785775.1| - 0.0054 16.8 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_1 PF01402.21 gi|344209598|ref|YP_004785775.1| - 0.0078 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParE_toxin PF05016.15 gi|344209599|ref|YP_004785776.1| - 6.2e-05 23.5 0.0 8.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Gp49 PF05973.14 gi|344209599|ref|YP_004785776.1| - 0.059 13.5 0.0 0.073 13.2 0.0 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) CBM-like PF14683.6 gi|344209602|ref|YP_004785779.1| - 0.027 14.3 0.0 0.033 14.1 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide lyase family 4, domain III GPI-anchored PF10342.9 gi|344209602|ref|YP_004785779.1| - 0.05 14.4 0.2 0.14 12.9 0.2 1.8 1 1 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family DUF1344 PF07076.11 gi|344209602|ref|YP_004785779.1| - 0.096 12.6 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1344) N6_Mtase PF02384.16 gi|344209603|ref|YP_004785780.1| - 1.3e-11 44.3 0.0 1.8e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase N6_N4_Mtase PF01555.18 gi|344209603|ref|YP_004785780.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA methylase Methyltransf_25 PF13649.6 gi|344209603|ref|YP_004785780.1| - 0.11 13.2 0.1 0.44 11.3 0.0 2.0 2 1 0 2 2 2 0 Methyltransferase domain DUF664 PF04978.12 gi|344209604|ref|YP_004785781.1| - 0.11 13.0 0.2 0.12 12.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF664) FANCL_C PF11793.8 gi|344209605|ref|YP_004785782.1| - 0.0026 17.9 0.6 0.4 10.9 0.1 2.1 1 1 1 2 2 2 2 FANCL C-terminal domain Terminase_GpA PF05876.12 gi|344209605|ref|YP_004785782.1| - 0.0091 14.6 0.5 0.0092 14.6 0.5 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-Di19 PF05605.12 gi|344209605|ref|YP_004785782.1| - 0.0094 16.2 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Rubredoxin_2 PF18073.1 gi|344209605|ref|YP_004785782.1| - 0.053 13.3 1.6 0.17 11.6 0.1 2.0 2 0 0 2 2 2 0 Rubredoxin metal binding domain DiS_P_DiS PF06750.13 gi|344209605|ref|YP_004785782.1| - 0.13 12.4 0.1 0.7 10.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain AAA_22 PF13401.6 gi|344209608|ref|YP_004785785.1| - 1.2e-14 54.7 0.2 2.6e-14 53.7 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|344209608|ref|YP_004785785.1| - 1.6e-11 44.9 0.3 3.9e-11 43.6 0.1 1.8 2 1 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|344209608|ref|YP_004785785.1| - 4.3e-08 32.8 0.0 7.1e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|344209608|ref|YP_004785785.1| - 1.2e-06 29.0 0.2 5.5e-06 26.8 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|344209608|ref|YP_004785785.1| - 1.8e-05 24.0 0.0 5.2e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|344209608|ref|YP_004785785.1| - 2.1e-05 24.3 0.0 0.00023 20.9 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain Sigma54_activ_2 PF14532.6 gi|344209608|ref|YP_004785785.1| - 9.9e-05 22.5 0.0 0.0046 17.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|344209608|ref|YP_004785785.1| - 0.0013 18.7 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|344209608|ref|YP_004785785.1| - 0.0016 18.5 0.3 0.0075 16.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|344209608|ref|YP_004785785.1| - 0.002 17.4 0.1 0.021 14.1 0.0 1.8 1 1 1 2 2 2 1 KAP family P-loop domain AAA_2 PF07724.14 gi|344209608|ref|YP_004785785.1| - 0.0037 17.4 0.6 0.0056 16.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|344209608|ref|YP_004785785.1| - 0.0038 17.2 0.0 0.0073 16.2 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|344209608|ref|YP_004785785.1| - 0.0056 17.0 0.1 0.011 16.1 0.1 1.6 1 1 0 1 1 1 1 RNA helicase AAA_10 PF12846.7 gi|344209608|ref|YP_004785785.1| - 0.02 13.9 0.0 0.048 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA-like domain DEAD PF00270.29 gi|344209608|ref|YP_004785785.1| - 0.022 14.5 2.3 2.4 7.9 0.2 2.5 2 1 1 3 3 2 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|344209608|ref|YP_004785785.1| - 0.022 14.3 0.1 0.04 13.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_32 PF13654.6 gi|344209608|ref|YP_004785785.1| - 0.025 13.4 1.3 0.16 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|344209608|ref|YP_004785785.1| - 0.025 13.8 0.0 0.04 13.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.17 gi|344209608|ref|YP_004785785.1| - 0.038 14.1 0.2 0.13 12.4 0.1 1.8 1 1 0 1 1 1 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|344209608|ref|YP_004785785.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|344209608|ref|YP_004785785.1| - 0.074 12.4 0.0 0.17 11.3 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|344209608|ref|YP_004785785.1| - 0.077 13.3 0.3 0.21 12.0 0.3 1.7 1 0 0 1 1 1 0 AAA C-terminal domain IstB_IS21 PF01695.17 gi|344209608|ref|YP_004785785.1| - 0.1 12.4 0.1 0.23 11.2 0.1 1.7 1 1 1 2 2 2 0 IstB-like ATP binding protein PIF1 PF05970.14 gi|344209608|ref|YP_004785785.1| - 0.11 11.6 0.0 0.23 10.6 0.0 1.5 1 1 0 1 1 1 0 PIF1-like helicase PadR PF03551.14 gi|344209609|ref|YP_004785786.1| - 1.7e-17 63.1 0.3 2e-17 62.9 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|344209609|ref|YP_004785786.1| - 0.00028 20.7 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|344209609|ref|YP_004785786.1| - 0.011 15.7 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|344209609|ref|YP_004785786.1| - 0.017 15.6 0.0 0.022 15.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|344209609|ref|YP_004785786.1| - 0.04 13.7 0.0 0.06 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|344209609|ref|YP_004785786.1| - 0.05 13.5 0.1 0.077 12.9 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344209609|ref|YP_004785786.1| - 0.14 12.1 0.3 0.6 10.0 0.1 2.2 2 1 0 2 2 2 0 MarR family HTH_34 PF13601.6 gi|344209609|ref|YP_004785786.1| - 0.16 12.2 0.0 0.2 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF664 PF04978.12 gi|344209610|ref|YP_004785787.1| - 0.1 13.0 0.1 0.12 12.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF664) N6_Mtase PF02384.16 gi|344209611|ref|YP_004785788.1| - 4.3e-13 49.2 0.0 6.2e-13 48.7 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase AviRa PF11599.8 gi|344209611|ref|YP_004785788.1| - 0.091 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_31 PF13847.6 gi|344209611|ref|YP_004785788.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344209611|ref|YP_004785788.1| - 0.13 13.0 0.1 0.35 11.6 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Zn-ribbon_8 PF09723.10 gi|344209612|ref|YP_004785789.1| - 0.017 15.2 1.3 0.72 10.0 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|344209612|ref|YP_004785789.1| - 0.06 12.8 2.2 0.11 11.9 0.3 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|344209612|ref|YP_004785789.1| - 0.16 12.3 4.5 0.57 10.5 0.9 2.1 1 1 1 2 2 2 0 zinc-ribbon DUF35_N PF12172.8 gi|344209612|ref|YP_004785789.1| - 0.16 11.9 5.0 4.3 7.3 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Trm112p PF03966.16 gi|344209612|ref|YP_004785789.1| - 0.3 11.7 1.9 2.9 8.5 0.1 2.1 1 1 1 2 2 2 0 Trm112p-like protein zf-C2H2_4 PF13894.6 gi|344209612|ref|YP_004785789.1| - 0.78 10.8 3.8 13 6.9 0.5 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_4 PF13717.6 gi|344209612|ref|YP_004785789.1| - 0.78 9.7 4.4 3.7 7.6 4.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TFIIB PF00382.19 gi|344209616|ref|YP_004785793.1| - 8.9e-20 70.5 2.2 5.9e-10 39.1 1.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344209616|ref|YP_004785793.1| - 1.1e-08 34.4 2.8 1.1e-08 34.4 2.8 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|344209616|ref|YP_004785793.1| - 0.002 18.0 0.6 0.002 18.0 0.6 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|344209616|ref|YP_004785793.1| - 0.043 13.2 2.5 0.14 11.6 2.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|344209616|ref|YP_004785793.1| - 0.052 13.6 0.7 0.11 12.5 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon HTH_23 PF13384.6 gi|344209616|ref|YP_004785793.1| - 0.052 13.4 0.2 3.2 7.7 0.0 3.2 3 0 0 3 3 3 0 Homeodomain-like domain XRCC4 PF06632.12 gi|344209616|ref|YP_004785793.1| - 0.076 11.9 1.3 0.095 11.5 1.3 1.1 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 zinc-ribbons_6 PF07191.12 gi|344209616|ref|YP_004785793.1| - 0.14 12.2 1.3 0.23 11.5 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|344209616|ref|YP_004785793.1| - 3.7 7.7 4.7 58 3.9 4.7 2.4 1 1 0 1 1 1 0 Zinc ribbon domain SWIM PF04434.17 gi|344209617|ref|YP_004785794.1| - 0.021 14.5 0.1 0.021 14.5 0.1 2.4 2 1 0 2 2 2 0 SWIM zinc finger Methyltransf_13 PF08421.11 gi|344209618|ref|YP_004785795.1| - 0.00096 19.4 0.1 0.0011 19.1 0.1 1.2 1 0 0 1 1 1 1 Putative zinc binding domain DUF1610 PF07754.11 gi|344209618|ref|YP_004785795.1| - 0.062 13.3 0.9 0.12 12.4 0.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Wzy_C_2 PF11846.8 gi|344209619|ref|YP_004785796.1| - 0.022 14.7 1.0 0.038 13.9 1.0 1.3 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal DUF2065 PF09838.9 gi|344209620|ref|YP_004785797.1| - 0.015 15.3 0.0 5.8 7.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) Caps_synth_CapC PF14102.6 gi|344209632|ref|YP_004785809.1| - 9e-27 93.9 42.5 4.2e-19 69.1 12.8 3.2 2 2 2 4 4 4 2 Capsule biosynthesis CapC TMEM141 PF15110.6 gi|344209632|ref|YP_004785809.1| - 1.3 9.6 4.7 3.3 8.3 0.6 2.9 2 1 1 3 3 3 0 TMEM141 protein family Mur_ligase_M PF08245.12 gi|344209633|ref|YP_004785810.1| - 1.2e-06 28.6 0.0 2.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain HTH_IclR PF09339.10 gi|344209633|ref|YP_004785810.1| - 0.13 12.1 0.2 0.72 9.7 0.1 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain PGA_cap PF09587.10 gi|344209634|ref|YP_004785811.1| - 1.2e-63 215.0 0.1 1.6e-63 214.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap CarboxypepD_reg PF13620.6 gi|344209634|ref|YP_004785811.1| - 4.7e-11 42.8 1.7 1.8e-10 40.9 0.9 2.5 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|344209634|ref|YP_004785811.1| - 0.00015 21.7 0.0 0.00031 20.7 0.0 1.5 1 0 0 1 1 1 1 CarboxypepD_reg-like domain bMG3 PF11974.8 gi|344209634|ref|YP_004785811.1| - 0.0072 16.3 0.1 0.028 14.4 0.0 2.0 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain Big_1 PF02369.16 gi|344209634|ref|YP_004785811.1| - 0.013 15.5 2.1 0.013 15.5 2.1 2.9 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) TAT_signal PF10518.9 gi|344209634|ref|YP_004785811.1| - 0.015 15.1 0.1 0.015 15.1 0.1 4.0 5 0 0 5 5 5 0 TAT (twin-arginine translocation) pathway signal sequence Fer2_4 PF13510.6 gi|344209634|ref|YP_004785811.1| - 0.049 13.7 0.1 0.049 13.7 0.1 2.4 3 0 0 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain HNH_5 PF14279.6 gi|344209635|ref|YP_004785812.1| - 0.00017 21.4 0.1 0.00038 20.3 0.1 1.6 1 0 0 1 1 1 1 HNH endonuclease HNH PF01844.23 gi|344209635|ref|YP_004785812.1| - 0.054 13.7 0.1 0.093 12.9 0.1 1.3 1 0 0 1 1 1 0 HNH endonuclease DZR PF12773.7 gi|344209635|ref|YP_004785812.1| - 0.074 13.1 0.2 0.13 12.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|344209635|ref|YP_004785812.1| - 0.12 11.8 0.9 0.79 9.2 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain FAM76 PF16046.5 gi|344209635|ref|YP_004785812.1| - 0.22 10.8 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 FAM76 protein SprT-like PF10263.9 gi|344209637|ref|YP_004785814.1| - 0.17 11.8 0.2 0.62 9.9 0.1 1.8 2 0 0 2 2 2 0 SprT-like family Aminopep PF10023.9 gi|344209637|ref|YP_004785814.1| - 0.5 9.7 3.2 0.8 9.0 0.1 2.1 2 0 0 2 2 2 0 Putative aminopeptidase zf-ribbon_3 PF13248.6 gi|344209637|ref|YP_004785814.1| - 0.59 9.6 2.4 0.64 9.5 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain PCNA_N PF00705.18 gi|344209640|ref|YP_004785817.1| - 0.0074 16.0 0.0 0.017 14.8 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain CRISPR_Cas2 PF09827.9 gi|344209643|ref|YP_004785820.1| - 2.2e-14 53.4 0.0 2.6e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Saw1 PF11561.8 gi|344209643|ref|YP_004785820.1| - 0.096 12.2 0.2 0.26 10.8 0.1 1.6 1 1 1 2 2 2 0 Single strand annealing-weakened 1 Cas_Cas1 PF01867.16 gi|344209644|ref|YP_004785821.1| - 1.6e-86 290.0 0.0 1.9e-86 289.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.17 gi|344209645|ref|YP_004785822.1| - 3.5e-46 157.3 0.0 4e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|344209645|ref|YP_004785822.1| - 0.0043 17.0 0.0 0.0049 16.8 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HD_6 PF18019.1 gi|344209646|ref|YP_004785823.1| - 6.3e-09 36.2 0.1 2.9e-08 34.1 0.1 2.1 2 0 0 2 2 2 1 HD domain ResIII PF04851.15 gi|344209646|ref|YP_004785823.1| - 1.3e-07 31.8 0.0 2.7e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|344209646|ref|YP_004785823.1| - 4.7e-06 26.5 0.0 1.4e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Rep_fac-A_C PF08646.10 gi|344209646|ref|YP_004785823.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Replication factor-A C terminal domain Cas_Cas5d PF09704.10 gi|344209647|ref|YP_004785824.1| - 8.7e-10 38.8 0.0 1.2e-09 38.3 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) Cas_Cas7 PF05107.12 gi|344209648|ref|YP_004785825.1| - 1.3e-46 159.2 0.0 1.5e-46 159.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_TM1802 PF09484.10 gi|344209649|ref|YP_004785826.1| - 2.6e-19 69.4 0.0 8.1e-09 34.8 0.0 2.3 2 1 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) Cas_Cas6 PF01881.16 gi|344209650|ref|YP_004785827.1| - 2.6e-18 67.0 0.0 3.3e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Phage_int_SAM_5 PF13102.6 gi|344209651|ref|YP_004785828.1| - 7.4e-05 23.0 0.0 0.00017 21.9 0.0 1.6 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|344209651|ref|YP_004785828.1| - 0.024 15.0 0.3 0.71 10.2 0.0 2.9 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF1030 PF06270.11 gi|344209652|ref|YP_004785829.1| - 0.11 12.3 0.1 0.27 11.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1030) Polbeta PF18765.1 gi|344209653|ref|YP_004785830.1| - 6.2e-10 39.0 0.2 3.7e-09 36.6 0.1 2.0 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|344209653|ref|YP_004785830.1| - 1.5e-08 34.8 0.6 4.8e-08 33.2 0.2 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain MarR_2 PF12802.7 gi|344209653|ref|YP_004785830.1| - 1.1e-06 28.4 0.0 2.3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|344209653|ref|YP_004785830.1| - 0.0015 18.2 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|344209653|ref|YP_004785830.1| - 0.0015 18.5 0.1 0.0043 17.0 0.0 1.8 2 0 0 2 2 2 1 HTH domain DNA_pol_B_palm PF14792.6 gi|344209653|ref|YP_004785830.1| - 0.0044 17.2 0.1 0.0092 16.2 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase beta palm Adenyl_cycl_N PF12633.7 gi|344209653|ref|YP_004785830.1| - 0.01 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain HTH_24 PF13412.6 gi|344209653|ref|YP_004785830.1| - 0.084 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DEP PF00610.21 gi|344209654|ref|YP_004785831.1| - 0.051 13.6 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) AAA_16 PF13191.6 gi|344209656|ref|YP_004785833.1| - 7.8e-13 49.2 0.7 6.3e-12 46.2 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|344209656|ref|YP_004785833.1| - 1.4e-12 48.2 0.0 3e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|344209656|ref|YP_004785833.1| - 2e-08 34.1 0.0 4.5e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|344209656|ref|YP_004785833.1| - 1.3e-07 32.0 0.0 2.7e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|344209656|ref|YP_004785833.1| - 2e-06 27.2 0.0 5e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|344209656|ref|YP_004785833.1| - 4.4e-06 26.2 0.0 9e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|344209656|ref|YP_004785833.1| - 0.00012 22.1 0.0 0.0003 20.8 0.0 1.6 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|344209656|ref|YP_004785833.1| - 0.00088 19.0 0.0 0.0085 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|344209656|ref|YP_004785833.1| - 0.0023 18.4 0.0 0.087 13.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|344209656|ref|YP_004785833.1| - 0.003 17.5 0.0 0.0088 16.0 0.0 1.7 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|344209656|ref|YP_004785833.1| - 0.0031 17.2 0.0 0.0055 16.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|344209656|ref|YP_004785833.1| - 0.007 15.9 0.0 0.028 13.9 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|344209656|ref|YP_004785833.1| - 0.0095 16.3 0.0 0.025 14.9 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_29 PF13555.6 gi|344209656|ref|YP_004785833.1| - 0.015 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344209656|ref|YP_004785833.1| - 0.033 14.1 0.0 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|344209656|ref|YP_004785833.1| - 0.035 14.6 0.2 0.092 13.3 0.2 2.0 1 1 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.17 gi|344209656|ref|YP_004785833.1| - 0.044 13.5 0.1 0.25 11.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|344209656|ref|YP_004785833.1| - 0.046 13.3 0.0 0.23 11.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|344209656|ref|YP_004785833.1| - 0.05 13.9 0.0 0.096 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|344209656|ref|YP_004785833.1| - 0.069 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_5 PF07728.14 gi|344209656|ref|YP_004785833.1| - 0.089 12.8 0.1 0.45 10.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|344209656|ref|YP_004785833.1| - 0.09 12.2 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|344209656|ref|YP_004785833.1| - 0.12 12.4 0.0 0.5 10.5 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase FMN_dh PF01070.18 gi|344209658|ref|YP_004785835.1| - 0.21 10.6 0.5 0.22 10.5 0.5 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase YqfD PF06898.11 gi|344209659|ref|YP_004785836.1| - 0.056 12.3 0.2 0.086 11.7 0.2 1.2 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD AAA_22 PF13401.6 gi|344209662|ref|YP_004785839.1| - 0.00023 21.4 1.1 0.017 15.4 0.3 3.0 3 0 0 3 3 3 1 AAA domain CagE_TrbE_VirB PF03135.14 gi|344209662|ref|YP_004785839.1| - 0.008 16.3 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system Zot PF05707.12 gi|344209662|ref|YP_004785839.1| - 0.0096 15.6 0.1 0.032 13.9 0.0 1.8 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_10 PF12846.7 gi|344209662|ref|YP_004785839.1| - 0.024 13.6 0.0 5.6 5.8 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.6 gi|344209662|ref|YP_004785839.1| - 0.045 14.1 0.3 1 9.7 0.1 2.7 2 0 0 2 2 2 0 AAA ATPase domain MeaB PF03308.16 gi|344209662|ref|YP_004785839.1| - 0.075 12.0 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB GAT PF03127.14 gi|344209662|ref|YP_004785839.1| - 0.27 11.5 2.5 4.5 7.7 0.1 3.5 3 0 0 3 3 3 0 GAT domain MgtE_N PF03448.17 gi|344209662|ref|YP_004785839.1| - 0.56 10.8 3.9 2 9.1 0.8 3.4 4 0 0 4 4 4 0 MgtE intracellular N domain ATP-grasp_6 PF18419.1 gi|344209663|ref|YP_004785840.1| - 0.0038 16.8 0.1 0.012 15.2 0.1 1.9 1 1 0 1 1 1 1 ATP-grasp-like domain DUF1778 PF08681.11 gi|344209663|ref|YP_004785840.1| - 0.042 13.8 0.4 0.12 12.4 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1778) RRF PF01765.19 gi|344209663|ref|YP_004785840.1| - 0.39 10.7 3.6 0.17 11.8 0.9 1.7 2 0 0 2 2 2 0 Ribosome recycling factor EF-G-binding_N PF07299.11 gi|344209664|ref|YP_004785841.1| - 0.15 12.6 3.2 0.52 10.9 0.8 2.3 2 1 0 2 2 2 0 Elongation factor G-binding protein, N-terminal Relaxase PF03432.14 gi|344209665|ref|YP_004785842.1| - 0.03 13.9 0.5 0.061 12.9 0.5 1.8 1 1 0 1 1 1 0 Relaxase/Mobilisation nuclease domain TrwB_AAD_bind PF10412.9 gi|344209666|ref|YP_004785843.1| - 1.5e-31 109.7 0.0 2.2e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|344209666|ref|YP_004785843.1| - 2.2e-11 43.9 0.0 4.9e-11 42.7 0.0 1.6 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG AAA_22 PF13401.6 gi|344209666|ref|YP_004785843.1| - 2e-06 28.1 0.0 0.0009 19.5 0.0 2.5 1 1 1 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|344209666|ref|YP_004785843.1| - 0.0012 19.3 0.0 0.0032 18.0 0.0 1.7 1 0 0 1 1 1 1 ABC transporter T4SS-DNA_transf PF02534.14 gi|344209666|ref|YP_004785843.1| - 0.0035 16.2 0.0 0.0057 15.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer DUF87 PF01935.17 gi|344209666|ref|YP_004785843.1| - 0.019 15.0 0.0 0.043 13.9 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_10 PF12846.7 gi|344209666|ref|YP_004785843.1| - 0.021 13.8 0.0 0.068 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.6 gi|344209666|ref|YP_004785843.1| - 0.028 14.8 0.2 0.48 10.8 0.2 2.5 1 1 0 1 1 1 0 AAA ATPase domain ATPase PF06745.13 gi|344209666|ref|YP_004785843.1| - 0.051 12.9 0.0 0.17 11.2 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_30 PF13604.6 gi|344209666|ref|YP_004785843.1| - 0.077 12.7 0.0 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|344209666|ref|YP_004785843.1| - 0.091 13.3 0.0 0.67 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|344209666|ref|YP_004785843.1| - 0.19 11.2 0.0 0.33 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Occludin_ELL PF07303.13 gi|344209668|ref|YP_004785845.1| - 0.067 13.9 1.3 1.7 9.4 0.6 2.6 1 1 1 2 2 2 0 Occludin homology domain Retrotrans_gag PF03732.17 gi|344209668|ref|YP_004785845.1| - 0.13 12.5 1.2 0.52 10.6 0.2 2.3 1 1 1 2 2 2 0 Retrotransposon gag protein PemK_toxin PF02452.17 gi|344209669|ref|YP_004785846.1| - 4.2e-15 56.1 0.0 4.7e-15 55.9 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system REPA_OB_2 PF16900.5 gi|344209670|ref|YP_004785847.1| - 0.002 18.0 0.0 0.0052 16.7 0.0 1.7 2 0 0 2 2 2 1 Replication protein A OB domain tRNA_anti-codon PF01336.25 gi|344209670|ref|YP_004785847.1| - 0.0022 17.9 0.1 0.0044 17.0 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain NTP_transf_2 PF01909.23 gi|344209672|ref|YP_004785849.1| - 4.6e-11 42.9 0.0 7.5e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|344209672|ref|YP_004785849.1| - 5.2e-08 32.9 0.0 8e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MarR_2 PF12802.7 gi|344209672|ref|YP_004785849.1| - 0.00028 20.7 0.1 0.0018 18.1 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|344209672|ref|YP_004785849.1| - 0.0022 17.5 0.0 0.016 14.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344209672|ref|YP_004785849.1| - 0.045 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4089 PF13318.6 gi|344209678|ref|YP_004785855.1| - 0.12 12.8 0.0 0.16 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4089) DnaJ PF00226.31 gi|344209679|ref|YP_004785856.1| - 1.7e-10 40.9 0.7 4.3e-10 39.6 0.7 1.6 1 0 0 1 1 1 1 DnaJ domain Macoilin PF09726.9 gi|344209679|ref|YP_004785856.1| - 0.051 12.2 7.4 0.078 11.5 7.4 1.3 1 0 0 1 1 1 0 Macoilin family CC190 PF15768.5 gi|344209679|ref|YP_004785856.1| - 3.8 7.5 18.7 5.3 7.0 18.7 1.1 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 190 DUF4551 PF15087.6 gi|344209679|ref|YP_004785856.1| - 9.4 4.9 11.5 12 4.6 11.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) HSP70 PF00012.20 gi|344209680|ref|YP_004785857.1| - 1.5e-120 403.2 0.7 1.5e-115 386.7 0.7 3.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|344209680|ref|YP_004785857.1| - 1.3e-13 50.5 0.0 4.9e-12 45.3 0.0 2.6 2 1 0 2 2 2 1 MreB/Mbl protein DDE_Tnp_IS1595 PF12762.7 gi|344209682|ref|YP_004785859.1| - 2e-21 76.6 0.0 2.8e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|344209682|ref|YP_004785859.1| - 9.4e-10 38.3 0.9 2e-09 37.3 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|344209682|ref|YP_004785859.1| - 1e-07 32.0 0.0 1.8e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|344209682|ref|YP_004785859.1| - 1.4e-05 24.7 4.0 3.8e-05 23.3 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain Zn-ribbon_8 PF09723.10 gi|344209682|ref|YP_004785859.1| - 0.0072 16.4 0.5 3.1 8.0 0.1 2.4 2 0 0 2 2 2 1 Zinc ribbon domain TackOD1 PF18551.1 gi|344209682|ref|YP_004785859.1| - 0.0084 15.8 0.3 0.013 15.1 0.3 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 HTH_30 PF13556.6 gi|344209682|ref|YP_004785859.1| - 0.037 13.8 0.1 0.099 12.5 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain ADK_lid PF05191.14 gi|344209682|ref|YP_004785859.1| - 0.041 13.9 0.1 0.041 13.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C4_Topoisom PF01396.19 gi|344209682|ref|YP_004785859.1| - 0.046 13.5 1.3 0.094 12.5 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.12 gi|344209682|ref|YP_004785859.1| - 0.051 13.3 0.0 0.81 9.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|344209682|ref|YP_004785859.1| - 0.079 12.8 0.0 0.31 10.9 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain PSD5 PF07637.11 gi|344209682|ref|YP_004785859.1| - 0.088 13.2 0.0 0.27 11.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1595) zinc-ribbons_6 PF07191.12 gi|344209682|ref|YP_004785859.1| - 0.11 12.5 0.3 0.2 11.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|344209682|ref|YP_004785859.1| - 0.12 12.7 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|344209682|ref|YP_004785859.1| - 0.13 12.3 0.2 0.26 11.4 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.6 gi|344209682|ref|YP_004785859.1| - 0.15 12.6 2.4 0.44 11.1 2.4 1.8 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-Dof PF02701.15 gi|344209682|ref|YP_004785859.1| - 0.17 12.0 3.5 0.37 11.0 3.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_4 PF13894.6 gi|344209682|ref|YP_004785859.1| - 0.31 12.0 1.7 1.1 10.3 0.2 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|344209682|ref|YP_004785859.1| - 0.81 10.4 5.8 7.6 7.3 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2HC_2 PF13913.6 gi|344209682|ref|YP_004785859.1| - 4.1 7.4 8.0 0.23 11.4 1.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type NERD PF08378.11 gi|344209684|ref|YP_004785861.1| - 6e-07 29.9 0.0 1e-06 29.2 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain UvrD_C_2 PF13538.6 gi|344209684|ref|YP_004785861.1| - 7.2e-07 28.9 0.2 1.8e-06 27.7 0.2 1.7 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD-helicase PF00580.21 gi|344209684|ref|YP_004785861.1| - 0.019 14.5 0.0 4.6 6.7 0.0 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|344209684|ref|YP_004785861.1| - 0.036 14.4 0.0 0.48 10.8 0.0 2.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|344209684|ref|YP_004785861.1| - 0.06 12.6 0.0 0.16 11.1 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|344209684|ref|YP_004785861.1| - 0.076 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Tropomyosin PF00261.20 gi|344209690|ref|YP_004785867.1| - 0.002 17.5 4.9 0.0032 16.9 4.9 1.2 1 0 0 1 1 1 1 Tropomyosin Herpes_UL25 PF01499.16 gi|344209690|ref|YP_004785867.1| - 0.016 13.8 1.4 0.024 13.2 1.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL25 family DASH_Spc19 PF08287.11 gi|344209690|ref|YP_004785867.1| - 0.024 14.5 3.2 0.042 13.8 3.2 1.4 1 0 0 1 1 1 0 Spc19 DUF4407 PF14362.6 gi|344209690|ref|YP_004785867.1| - 0.048 13.0 8.5 0.09 12.1 8.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TetR_C_23 PF17931.1 gi|344209690|ref|YP_004785867.1| - 0.081 13.0 0.2 0.18 11.9 0.2 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Synaptobrevin PF00957.21 gi|344209690|ref|YP_004785867.1| - 0.2 11.4 1.2 0.45 10.3 1.2 1.6 1 0 0 1 1 1 0 Synaptobrevin CorA PF01544.18 gi|344209690|ref|YP_004785867.1| - 0.51 9.6 2.9 0.54 9.5 2.0 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein BST2 PF16716.5 gi|344209690|ref|YP_004785867.1| - 0.65 10.6 6.6 4.8 7.8 5.0 2.4 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 LPP PF04728.13 gi|344209690|ref|YP_004785867.1| - 0.78 10.2 4.7 0.59 10.6 0.1 2.9 1 1 2 3 3 3 0 Lipoprotein leucine-zipper ABC_tran_CTD PF16326.5 gi|344209690|ref|YP_004785867.1| - 2.5 8.4 7.5 22 5.4 4.7 3.1 2 1 0 2 2 2 0 ABC transporter C-terminal domain Crystall_2 PF09076.10 gi|344209691|ref|YP_004785868.1| - 0.044 13.7 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 Beta/Gamma crystallin TOBE_2 PF08402.10 gi|344209691|ref|YP_004785868.1| - 0.15 12.3 0.9 0.7 10.1 0.7 1.8 1 1 1 2 2 2 0 TOBE domain HypA PF01155.19 gi|344209693|ref|YP_004785870.1| - 0.0012 18.9 5.3 0.45 10.6 0.3 2.3 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4596 PF15363.6 gi|344209693|ref|YP_004785870.1| - 0.0091 16.2 0.4 0.028 14.6 0.4 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4596) RNA_POL_M_15KD PF02150.16 gi|344209693|ref|YP_004785870.1| - 0.023 14.6 3.3 6.7 6.7 0.0 3.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zinc_ribbon_15 PF17032.5 gi|344209693|ref|YP_004785870.1| - 0.026 15.3 6.0 0.082 13.7 0.5 2.5 2 1 0 2 2 2 0 zinc-ribbon family DZR PF12773.7 gi|344209693|ref|YP_004785870.1| - 0.16 12.0 13.1 0.081 13.0 1.8 2.9 2 1 0 2 2 2 0 Double zinc ribbon Baculo_LEF5_C PF11792.8 gi|344209693|ref|YP_004785870.1| - 0.52 10.0 0.0 0.52 10.0 0.0 2.8 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zinc-ribbons_6 PF07191.12 gi|344209693|ref|YP_004785870.1| - 0.53 10.3 9.1 2.4 8.2 0.9 2.3 2 0 0 2 2 2 0 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|344209693|ref|YP_004785870.1| - 0.82 9.6 8.0 0.24 11.3 2.0 2.4 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.7 gi|344209693|ref|YP_004785870.1| - 0.95 9.5 12.5 3.8 7.6 2.5 3.6 2 1 1 3 3 3 0 Transposase zinc-ribbon domain RNHCP PF12647.7 gi|344209693|ref|YP_004785870.1| - 5.1 7.1 9.4 6.9 6.7 0.3 3.2 2 1 1 3 3 3 0 RNHCP domain HTH_18 PF12833.7 gi|344209694|ref|YP_004785871.1| - 0.042 14.1 0.0 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Peripla_BP_2 PF01497.18 gi|344209695|ref|YP_004785872.1| - 1.6e-08 34.4 0.4 4.1e-08 33.1 0.4 1.7 1 1 0 1 1 1 1 Periplasmic binding protein PNPase PF03726.14 gi|344209695|ref|YP_004785872.1| - 0.034 14.6 0.3 0.16 12.5 0.1 2.1 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain TackOD1 PF18551.1 gi|344209698|ref|YP_004785875.1| - 0.017 14.8 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 A2L_zn_ribbon PF08792.10 gi|344209698|ref|YP_004785875.1| - 0.023 14.4 1.0 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain UPF0547 PF10571.9 gi|344209698|ref|YP_004785875.1| - 0.023 14.8 4.0 0.21 11.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.20 gi|344209698|ref|YP_004785875.1| - 0.049 13.7 0.4 7 6.8 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.7 gi|344209698|ref|YP_004785875.1| - 0.054 13.5 0.1 9.3 6.3 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|344209698|ref|YP_004785875.1| - 0.057 12.9 1.2 3 7.4 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|344209698|ref|YP_004785875.1| - 0.063 12.9 0.7 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger IBR PF01485.21 gi|344209698|ref|YP_004785875.1| - 0.095 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Auto_anti-p27 PF06677.12 gi|344209698|ref|YP_004785875.1| - 0.12 12.6 0.8 5.9 7.1 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1610 PF07754.11 gi|344209698|ref|YP_004785875.1| - 0.12 12.4 2.5 0.37 10.8 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Glyco_transf_21 PF13506.6 gi|344209700|ref|YP_004785877.1| - 2.6e-12 46.5 0.0 4.3e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|344209700|ref|YP_004785877.1| - 1.1e-06 28.5 0.3 3e-06 27.1 0.3 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344209700|ref|YP_004785877.1| - 0.058 13.3 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF4781 PF16013.5 gi|344209700|ref|YP_004785877.1| - 0.059 12.2 0.4 0.091 11.6 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF4229 PF14012.6 gi|344209700|ref|YP_004785877.1| - 0.23 11.6 9.3 0.24 11.5 5.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) E1-E2_ATPase PF00122.20 gi|344209700|ref|YP_004785877.1| - 0.41 10.1 2.2 0.65 9.5 2.2 1.2 1 0 0 1 1 1 0 E1-E2 ATPase HTH_20 PF12840.7 gi|344209701|ref|YP_004785878.1| - 1.6e-06 28.1 0.1 4.1e-06 26.8 0.2 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|344209701|ref|YP_004785878.1| - 2.3e-06 27.4 0.2 4.3e-06 26.5 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|344209701|ref|YP_004785878.1| - 6e-05 22.8 0.2 0.00015 21.5 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344209701|ref|YP_004785878.1| - 0.00012 21.9 0.0 0.00038 20.3 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|344209701|ref|YP_004785878.1| - 0.00014 21.7 0.0 0.00046 20.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|344209701|ref|YP_004785878.1| - 0.00031 20.7 0.3 0.00067 19.6 0.2 1.6 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_IclR PF09339.10 gi|344209701|ref|YP_004785878.1| - 0.0058 16.4 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|344209701|ref|YP_004785878.1| - 0.0062 15.9 0.0 0.014 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.6 gi|344209701|ref|YP_004785878.1| - 0.012 15.6 0.0 0.047 13.7 0.0 2.0 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|344209701|ref|YP_004785878.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344209701|ref|YP_004785878.1| - 0.014 15.2 0.2 0.049 13.5 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.6 gi|344209701|ref|YP_004785878.1| - 0.042 13.7 0.0 0.091 12.6 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF2513 PF10711.9 gi|344209701|ref|YP_004785878.1| - 0.15 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) MASE3 PF17159.4 gi|344209702|ref|YP_004785879.1| - 0.01 15.5 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 0 Membrane-associated sensor domain DUF1772 PF08592.11 gi|344209702|ref|YP_004785879.1| - 0.02 15.2 0.8 0.02 15.2 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) MerC PF03203.14 gi|344209702|ref|YP_004785879.1| - 0.035 14.6 1.0 0.041 14.3 1.0 1.2 1 0 0 1 1 1 0 MerC mercury resistance protein LrgB PF04172.16 gi|344209702|ref|YP_004785879.1| - 0.039 13.5 4.5 0.026 14.1 3.1 1.4 2 0 0 2 2 2 0 LrgB-like family DUF5381 PF17353.2 gi|344209702|ref|YP_004785879.1| - 0.044 13.5 1.3 0.053 13.3 1.0 1.2 1 1 0 1 1 1 0 Family of unknown function (DUF5381) CPBP PF02517.16 gi|344209703|ref|YP_004785880.1| - 5.6e-14 52.3 5.8 5.6e-14 52.3 5.8 2.8 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease DUF2105 PF09878.9 gi|344209703|ref|YP_004785880.1| - 0.15 11.8 8.5 0.16 11.6 1.2 2.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2105) DUF4282 PF14110.6 gi|344209703|ref|YP_004785880.1| - 9.4 7.0 16.1 30 5.4 0.6 3.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4282) TAT_signal PF10518.9 gi|344209704|ref|YP_004785881.1| - 0.12 12.2 0.6 0.12 12.2 0.6 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Spermine_synth PF01564.17 gi|344209705|ref|YP_004785882.1| - 1.2e-13 50.9 0.0 1.9e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|344209705|ref|YP_004785882.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF2617 PF10936.8 gi|344209706|ref|YP_004785883.1| - 6.7e-08 32.8 1.3 1.6e-06 28.3 1.3 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF2617 DUF3060 PF11259.8 gi|344209707|ref|YP_004785884.1| - 0.059 13.1 8.7 0.56 9.9 1.2 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3060) Pentapeptide_3 PF13576.6 gi|344209708|ref|YP_004785885.1| - 8.6e-44 147.5 103.9 1e-09 38.4 4.8 9.7 6 3 5 11 11 11 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|344209708|ref|YP_004785885.1| - 1.7e-06 27.9 3.9 1.7e-06 27.9 3.9 2.3 1 1 1 2 2 2 1 Ion channel Ntox34 PF15606.6 gi|344209710|ref|YP_004785887.1| - 0.1 12.7 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial toxin 34 AAA_31 PF13614.6 gi|344209712|ref|YP_004785889.1| - 9.2e-19 68.0 0.0 1.2e-18 67.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344209712|ref|YP_004785889.1| - 1.3e-12 47.8 0.0 1.8e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|344209712|ref|YP_004785889.1| - 9.7e-06 25.2 0.1 4.1e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|344209712|ref|YP_004785889.1| - 0.00014 21.2 0.1 0.054 12.8 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|344209712|ref|YP_004785889.1| - 0.00034 19.9 0.2 0.00055 19.2 0.2 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|344209712|ref|YP_004785889.1| - 0.0023 17.5 0.0 0.0047 16.4 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|344209712|ref|YP_004785889.1| - 0.061 12.7 0.0 0.2 11.1 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AA_permease_2 PF13520.6 gi|344209713|ref|YP_004785890.1| - 5.7e-44 150.6 43.8 7.7e-44 150.2 43.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|344209713|ref|YP_004785890.1| - 2.8e-35 121.8 44.9 1.7e-34 119.2 44.9 1.9 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|344209713|ref|YP_004785890.1| - 1.1e-18 68.1 4.5 4.7e-11 43.4 0.6 3.3 2 1 1 3 3 3 3 Universal stress protein family Trp_Tyr_perm PF03222.13 gi|344209713|ref|YP_004785890.1| - 7.5e-08 31.8 24.8 1.2e-07 31.1 24.8 1.2 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Spore_permease PF03845.13 gi|344209713|ref|YP_004785890.1| - 0.0015 17.5 13.6 0.0015 17.5 13.6 1.6 2 0 0 2 2 2 1 Spore germination protein Usp PF00582.26 gi|344209714|ref|YP_004785891.1| - 1.6e-09 38.4 0.4 2.2e-09 38.0 0.4 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF1179 PF06678.11 gi|344209714|ref|YP_004785891.1| - 0.013 15.4 0.3 0.037 14.0 0.0 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1179) TrkH PF02386.16 gi|344209716|ref|YP_004785893.1| - 5.1e-60 203.4 14.4 7.5e-60 202.8 14.4 1.2 1 0 0 1 1 1 1 Cation transport protein Form-deh_trans PF09163.11 gi|344209716|ref|YP_004785893.1| - 0.5 10.2 3.8 1.6 8.6 0.0 3.3 2 0 0 2 2 2 0 Formate dehydrogenase N, transmembrane TrkA_C PF02080.21 gi|344209717|ref|YP_004785894.1| - 1.9e-13 50.0 1.1 3.5e-13 49.2 1.1 1.5 1 0 0 1 1 1 1 TrkA-C domain TrkA_N PF02254.18 gi|344209717|ref|YP_004785894.1| - 2.3e-08 34.3 3.9 1.1e-07 32.1 1.0 2.7 2 1 0 2 2 2 1 TrkA-N domain Gemin7 PF11095.8 gi|344209717|ref|YP_004785894.1| - 0.046 13.6 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 Gem-associated protein 7 (Gemin7) ADH_zinc_N PF00107.26 gi|344209717|ref|YP_004785894.1| - 0.058 13.4 0.1 0.19 11.7 0.0 1.8 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Castor_Poll_mid PF06241.12 gi|344209717|ref|YP_004785894.1| - 0.09 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel Na_H_Exchanger PF00999.21 gi|344209718|ref|YP_004785895.1| - 5.3e-18 65.0 21.7 6.8e-18 64.6 21.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Tom6 PF17112.5 gi|344209718|ref|YP_004785895.1| - 1.2 8.6 5.3 11 5.6 0.7 2.7 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal DisA_N PF02457.16 gi|344209719|ref|YP_004785896.1| - 2.3e-08 33.7 0.0 2.9e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding TrkA_N PF02254.18 gi|344209720|ref|YP_004785897.1| - 5.8e-32 110.4 8.7 2.4e-16 60.0 0.3 2.7 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|344209720|ref|YP_004785897.1| - 1.5e-19 69.5 0.2 3.3e-10 39.7 0.0 3.8 3 0 0 3 3 3 2 TrkA-C domain KH_1 PF00013.29 gi|344209720|ref|YP_004785897.1| - 0.023 14.5 0.2 1.7 8.5 0.0 2.9 2 0 0 2 2 2 0 KH domain HTH_13 PF11972.8 gi|344209720|ref|YP_004785897.1| - 0.045 13.8 0.2 0.17 11.9 0.0 2.1 2 0 0 2 2 2 0 HTH DNA binding domain IlvN PF07991.12 gi|344209720|ref|YP_004785897.1| - 0.049 13.2 0.6 4.5 6.8 0.2 2.3 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF2529 PF10740.9 gi|344209720|ref|YP_004785897.1| - 0.12 12.0 0.0 0.35 10.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) Ion_trans_2 PF07885.16 gi|344209720|ref|YP_004785897.1| - 2.2 8.3 7.5 4.4 7.3 7.5 1.5 1 0 0 1 1 1 0 Ion channel AA_permease_2 PF13520.6 gi|344209721|ref|YP_004785898.1| - 5.2e-53 180.4 42.1 6.5e-53 180.1 42.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|344209721|ref|YP_004785898.1| - 2.1e-43 148.7 39.3 2.8e-43 148.2 39.3 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|344209721|ref|YP_004785898.1| - 6.1e-06 25.3 14.2 6.1e-06 25.3 14.2 2.5 2 1 0 2 2 2 1 Spore germination protein Trp_Tyr_perm PF03222.13 gi|344209721|ref|YP_004785898.1| - 0.68 8.9 36.6 0.16 11.0 27.7 2.9 1 1 0 2 2 2 0 Tryptophan/tyrosine permease family TrkA_N PF02254.18 gi|344209722|ref|YP_004785899.1| - 6.6e-25 87.6 1.1 1.1e-24 86.9 1.1 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|344209722|ref|YP_004785899.1| - 2.7e-08 33.5 1.4 5.6e-08 32.5 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain Pyr_redox PF00070.27 gi|344209722|ref|YP_004785899.1| - 1.3e-07 32.1 0.2 2.3e-07 31.2 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.6 gi|344209722|ref|YP_004785899.1| - 2e-07 31.1 0.5 3.3e-07 30.4 0.5 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|344209722|ref|YP_004785899.1| - 8.4e-06 26.2 0.1 1.7e-05 25.2 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|344209722|ref|YP_004785899.1| - 4.3e-05 22.9 0.0 6.8e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|344209722|ref|YP_004785899.1| - 0.0002 20.7 0.1 0.00046 19.5 0.1 1.5 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344209722|ref|YP_004785899.1| - 0.00033 20.8 0.2 0.0085 16.3 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344209722|ref|YP_004785899.1| - 0.00082 19.0 0.8 0.0011 18.6 0.8 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|344209722|ref|YP_004785899.1| - 0.001 18.7 0.2 0.0023 17.5 0.2 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.13 gi|344209722|ref|YP_004785899.1| - 0.0019 17.8 0.2 0.0032 17.1 0.2 1.3 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.18 gi|344209722|ref|YP_004785899.1| - 0.0025 17.7 0.1 0.0043 16.9 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344209722|ref|YP_004785899.1| - 0.0045 17.2 0.4 0.009 16.3 0.4 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|344209722|ref|YP_004785899.1| - 0.0068 15.7 0.4 0.073 12.3 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Epimerase PF01370.21 gi|344209722|ref|YP_004785899.1| - 0.0097 15.4 0.2 0.016 14.7 0.2 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HI0933_like PF03486.14 gi|344209722|ref|YP_004785899.1| - 0.017 13.9 0.1 0.024 13.4 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein adh_short_C2 PF13561.6 gi|344209722|ref|YP_004785899.1| - 0.021 14.4 0.9 0.044 13.3 0.1 1.8 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Trp_halogenase PF04820.14 gi|344209722|ref|YP_004785899.1| - 0.032 13.1 0.1 0.04 12.8 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.23 gi|344209722|ref|YP_004785899.1| - 0.043 13.8 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LpxI_N PF17930.1 gi|344209722|ref|YP_004785899.1| - 0.045 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 LpxI N-terminal domain XdhC_C PF13478.6 gi|344209722|ref|YP_004785899.1| - 0.052 14.1 0.2 0.18 12.3 0.1 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain ApbA PF02558.16 gi|344209722|ref|YP_004785899.1| - 0.058 13.0 0.1 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_trans_4_4 PF13579.6 gi|344209722|ref|YP_004785899.1| - 0.06 13.8 0.7 1 9.8 0.7 2.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|344209722|ref|YP_004785899.1| - 0.12 12.4 0.1 0.34 10.9 0.1 1.9 1 1 1 2 2 2 0 Glycosyltransferase Family 4 Usp PF00582.26 gi|344209723|ref|YP_004785900.1| - 4.9e-05 23.9 0.1 0.3 11.6 0.0 2.5 1 1 1 2 2 2 2 Universal stress protein family Fic PF02661.18 gi|344209725|ref|YP_004785902.1| - 3e-25 88.9 0.0 1.7e-24 86.5 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.6 gi|344209725|ref|YP_004785902.1| - 1.8e-24 85.5 0.0 4.7e-24 84.2 0.0 1.7 1 0 0 1 1 1 1 Fic/DOC family N-terminal HTH_Crp_2 PF13545.6 gi|344209725|ref|YP_004785902.1| - 0.021 14.8 0.2 0.085 12.8 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|344209725|ref|YP_004785902.1| - 0.044 14.0 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4172 PF13776.6 gi|344209725|ref|YP_004785902.1| - 0.049 14.0 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) FtsK_gamma PF09397.10 gi|344209725|ref|YP_004785902.1| - 0.067 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Ftsk gamma domain DDE_Tnp_1 PF01609.21 gi|344209726|ref|YP_004785903.1| - 4e-10 39.7 0.3 7.1e-10 38.9 0.3 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|344209726|ref|YP_004785903.1| - 3.6e-06 26.9 0.0 2e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_5 PF13546.6 gi|344209726|ref|YP_004785903.1| - 0.00029 20.3 0.3 0.00058 19.3 0.3 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease Phage_integrase PF00589.22 gi|344209727|ref|YP_004785904.1| - 4.4e-15 55.9 0.0 3e-14 53.2 0.0 2.1 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|344209727|ref|YP_004785904.1| - 7.5e-07 29.4 0.0 1.3e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|344209727|ref|YP_004785904.1| - 1.6e-05 25.1 0.3 5.2e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 gi|344209727|ref|YP_004785904.1| - 0.058 12.3 0.0 0.22 10.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Phage_int_SAM_4 PF13495.6 gi|344209727|ref|YP_004785904.1| - 0.075 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Arg_decarbox_C PF17944.1 gi|344209727|ref|YP_004785904.1| - 0.086 13.4 0.0 0.32 11.6 0.0 2.0 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Cdc6_C PF09079.11 gi|344209728|ref|YP_004785905.1| - 4.7e-15 55.3 0.0 5.1e-15 55.2 0.0 1.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain Colicin_D PF11429.8 gi|344209733|ref|YP_004785910.1| - 1.7e-16 60.4 0.2 2e-16 60.2 0.2 1.1 1 0 0 1 1 1 1 Colicin D 2C_adapt PF08793.10 gi|344209733|ref|YP_004785910.1| - 0.11 12.7 0.1 21 5.4 0.1 2.4 2 0 0 2 2 2 0 2-cysteine adaptor domain EF-hand_6 PF13405.6 gi|344209734|ref|YP_004785911.1| - 0.025 14.5 0.6 6.6 6.9 0.2 2.5 2 0 0 2 2 2 0 EF-hand domain EF-hand_7 PF13499.6 gi|344209734|ref|YP_004785911.1| - 0.032 14.7 0.9 0.099 13.1 0.8 1.9 1 1 0 1 1 1 0 EF-hand domain pair DDE_3 PF13358.6 gi|344209737|ref|YP_004785914.1| - 2.9e-32 111.5 0.0 3.5e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.26 gi|344209737|ref|YP_004785914.1| - 0.00019 21.6 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.6 gi|344209738|ref|YP_004785915.1| - 6.7e-18 64.1 1.5 1.1e-17 63.3 0.4 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.6 gi|344209738|ref|YP_004785915.1| - 2.9e-08 34.2 0.7 6.1e-08 33.2 0.3 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_31 PF13560.6 gi|344209738|ref|YP_004785915.1| - 0.003 17.9 1.4 0.031 14.6 0.1 2.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|344209738|ref|YP_004785915.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_21 PF13276.6 gi|344209738|ref|YP_004785915.1| - 0.019 15.1 0.1 0.11 12.7 0.0 2.1 2 1 0 2 2 2 0 HTH-like domain HTH_29 PF13551.6 gi|344209738|ref|YP_004785915.1| - 0.025 14.6 0.2 0.13 12.4 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn helix DUF1778 PF08681.11 gi|344209738|ref|YP_004785915.1| - 0.087 12.8 0.2 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) DDT PF02791.17 gi|344209738|ref|YP_004785915.1| - 0.12 12.7 0.1 9.2 6.7 0.0 2.2 2 0 0 2 2 2 0 DDT domain DDE_Tnp_IS1595 PF12762.7 gi|344209739|ref|YP_004785916.1| - 2.8e-08 33.9 0.0 3.9e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain DDE_Tnp_1 PF01609.21 gi|344209740|ref|YP_004785917.1| - 9.2e-06 25.4 0.7 1.8e-05 24.5 0.7 1.3 1 1 0 1 1 1 1 Transposase DDE domain VWA PF00092.28 gi|344209742|ref|YP_004785919.1| - 2e-22 80.3 0.1 4.1e-22 79.3 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|344209742|ref|YP_004785919.1| - 8.6e-15 55.3 0.2 5e-14 52.9 0.0 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain Dockerin_1 PF00404.18 gi|344209742|ref|YP_004785919.1| - 4.8e-07 29.9 0.7 4.8e-07 29.9 0.7 4.4 4 0 0 4 4 4 1 Dockerin type I domain VWA_3 PF13768.6 gi|344209742|ref|YP_004785919.1| - 1.5e-06 28.2 0.0 3.7e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF3883 PF13020.6 gi|344209742|ref|YP_004785919.1| - 0.019 15.0 0.3 0.044 13.8 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) VWA_CoxE PF05762.14 gi|344209742|ref|YP_004785919.1| - 0.034 13.5 0.0 0.085 12.2 0.0 1.6 1 0 0 1 1 1 0 VWA domain containing CoxE-like protein Nop14 PF04147.12 gi|344209743|ref|YP_004785920.1| - 2.4 6.3 5.6 2.7 6.1 5.6 1.0 1 0 0 1 1 1 0 Nop14-like family Phage_integrase PF00589.22 gi|344209744|ref|YP_004785921.1| - 4.9e-15 55.7 0.0 3.5e-14 53.0 0.0 2.1 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|344209744|ref|YP_004785921.1| - 2.4e-05 24.6 0.0 4.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|344209744|ref|YP_004785921.1| - 4.5e-05 23.7 0.3 0.00014 22.1 0.0 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.8 gi|344209744|ref|YP_004785921.1| - 0.069 12.1 0.0 0.32 9.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Arg_decarbox_C PF17944.1 gi|344209744|ref|YP_004785921.1| - 0.091 13.3 0.0 0.35 11.5 0.0 2.0 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Phage_int_SAM_4 PF13495.6 gi|344209744|ref|YP_004785921.1| - 0.14 12.7 0.0 0.33 11.5 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DDE_Tnp_1 PF01609.21 gi|344209745|ref|YP_004785922.1| - 4e-10 39.7 0.3 7.1e-10 38.9 0.3 1.4 1 0 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|344209745|ref|YP_004785922.1| - 3.6e-06 26.9 0.0 2e-05 24.5 0.0 2.3 2 0 0 2 2 2 1 Transposase domain (DUF772) DDE_5 PF13546.6 gi|344209745|ref|YP_004785922.1| - 0.00029 20.3 0.3 0.00058 19.3 0.3 1.5 1 0 0 1 1 1 1 DDE superfamily endonuclease Fic PF02661.18 gi|344209746|ref|YP_004785923.1| - 3e-25 88.9 0.0 1.7e-24 86.5 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.6 gi|344209746|ref|YP_004785923.1| - 1.8e-24 85.5 0.0 4.7e-24 84.2 0.0 1.7 1 0 0 1 1 1 1 Fic/DOC family N-terminal HTH_Crp_2 PF13545.6 gi|344209746|ref|YP_004785923.1| - 0.021 14.8 0.2 0.085 12.8 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_17 PF12728.7 gi|344209746|ref|YP_004785923.1| - 0.044 14.0 0.0 0.1 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4172 PF13776.6 gi|344209746|ref|YP_004785923.1| - 0.049 14.0 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4172) FtsK_gamma PF09397.10 gi|344209746|ref|YP_004785923.1| - 0.067 13.0 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Ftsk gamma domain DDE_Tnp_IS240 PF13610.6 gi|344209747|ref|YP_004785924.1| - 4.7e-21 75.5 0.1 6.7e-21 75.0 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|344209747|ref|YP_004785924.1| - 2.6e-06 27.1 2.3 6.4e-06 25.9 2.3 1.7 1 1 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|344209747|ref|YP_004785924.1| - 0.0056 16.7 1.6 0.12 12.4 0.0 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF2384) rve PF00665.26 gi|344209747|ref|YP_004785924.1| - 0.0062 16.7 0.3 0.014 15.6 0.3 1.8 1 1 0 1 1 1 1 Integrase core domain DnaT PF17948.1 gi|344209747|ref|YP_004785924.1| - 0.041 13.6 2.7 0.099 12.4 2.7 1.6 1 0 0 1 1 1 0 DnaT DNA-binding domain DUF21 PF01595.20 gi|344209750|ref|YP_004785927.1| - 4.1e-34 117.8 0.1 7.2e-34 117.0 0.1 1.3 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|344209750|ref|YP_004785927.1| - 4.8e-05 23.7 1.3 0.00099 19.5 0.0 2.4 2 0 0 2 2 2 1 CBS domain DUF3102 PF11300.8 gi|344209750|ref|YP_004785927.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3102) F420_ligase PF01996.16 gi|344209751|ref|YP_004785928.1| - 5.5e-46 156.9 1.7 6.5e-46 156.7 1.7 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase DUF3403 PF11883.8 gi|344209752|ref|YP_004785929.1| - 0.29 11.3 0.1 0.29 11.3 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3403) UCR_Fe-S_N PF10399.9 gi|344209753|ref|YP_004785930.1| - 7.2 6.0 7.5 44 3.5 0.0 2.6 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HTH_20 PF12840.7 gi|344209754|ref|YP_004785931.1| - 7.7e-14 51.5 0.0 1.2e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344209754|ref|YP_004785931.1| - 5.1e-08 32.3 0.0 2e-07 30.5 0.0 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344209754|ref|YP_004785931.1| - 4.3e-06 26.5 0.0 1.4e-05 24.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344209754|ref|YP_004785931.1| - 7.8e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344209754|ref|YP_004785931.1| - 0.00027 20.7 0.1 0.0009 19.1 0.0 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|344209754|ref|YP_004785931.1| - 0.0028 17.7 0.3 0.02 15.0 0.3 2.1 1 1 0 1 1 1 1 DprA winged helix domain FaeA PF04703.12 gi|344209754|ref|YP_004785931.1| - 0.0041 17.5 0.0 0.0094 16.3 0.0 1.5 1 1 0 1 1 1 1 FaeA-like protein HTH_11 PF08279.12 gi|344209754|ref|YP_004785931.1| - 0.0059 16.5 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.16 gi|344209754|ref|YP_004785931.1| - 0.0082 15.9 0.0 0.015 15.1 0.0 1.5 1 1 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.10 gi|344209754|ref|YP_004785931.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dimerisation2 PF16864.5 gi|344209754|ref|YP_004785931.1| - 0.056 13.4 0.0 0.08 12.9 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain B-block_TFIIIC PF04182.12 gi|344209754|ref|YP_004785931.1| - 0.087 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RepL PF05732.11 gi|344209754|ref|YP_004785931.1| - 0.09 12.2 0.0 0.2 11.1 0.0 1.5 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_27 PF13463.6 gi|344209754|ref|YP_004785931.1| - 0.12 12.9 0.0 0.3 11.6 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|344209754|ref|YP_004785931.1| - 0.14 12.1 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|344209754|ref|YP_004785931.1| - 0.15 12.2 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF5038 PF16441.5 gi|344209755|ref|YP_004785932.1| - 0.074 13.1 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5038) Acetyltransf_1 PF00583.25 gi|344209756|ref|YP_004785933.1| - 3.1e-17 62.9 0.0 4.4e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344209756|ref|YP_004785933.1| - 1.3e-10 41.3 0.0 1.8e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344209756|ref|YP_004785933.1| - 1.9e-10 41.0 0.0 2.8e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|344209756|ref|YP_004785933.1| - 1.2e-06 28.2 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344209756|ref|YP_004785933.1| - 4.6e-05 24.1 0.0 6e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344209756|ref|YP_004785933.1| - 9.3e-05 22.3 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|344209756|ref|YP_004785933.1| - 0.0014 18.8 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344209756|ref|YP_004785933.1| - 0.0028 17.8 0.0 0.0053 16.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|344209756|ref|YP_004785933.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|344209756|ref|YP_004785933.1| - 0.2 11.2 0.0 0.3 10.6 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase MASE3 PF17159.4 gi|344209757|ref|YP_004785934.1| - 0.035 13.7 5.3 0.049 13.3 5.3 1.2 1 1 0 1 1 1 0 Membrane-associated sensor domain GPDPase_memb PF10110.9 gi|344209759|ref|YP_004785936.1| - 0.0007 18.5 2.0 0.00088 18.1 2.0 1.2 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF1700 PF08006.11 gi|344209759|ref|YP_004785936.1| - 1.5 8.3 3.9 2.3 7.7 3.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) PQQ_2 PF13360.6 gi|344209760|ref|YP_004785937.1| - 3.9e-35 121.5 4.4 1.1e-16 61.2 0.2 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|344209760|ref|YP_004785937.1| - 1.5e-28 98.5 17.5 5.1e-06 26.8 0.0 8.1 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|344209760|ref|YP_004785937.1| - 3.3e-13 48.9 8.0 0.045 13.7 0.0 8.2 10 0 0 10 10 10 4 PQQ enzyme repeat HNH_2 PF13391.6 gi|344209762|ref|YP_004785939.1| - 5.8e-10 39.2 0.1 1.9e-09 37.5 0.1 1.9 1 1 0 1 1 1 1 HNH endonuclease HTH_45 PF14947.6 gi|344209762|ref|YP_004785939.1| - 2.4e-05 24.2 0.0 0.011 15.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix HemN_C PF06969.16 gi|344209762|ref|YP_004785939.1| - 0.00092 19.2 0.1 1.8 8.7 0.0 2.4 2 0 0 2 2 2 2 HemN C-terminal domain AAA_assoc_C PF09821.9 gi|344209762|ref|YP_004785939.1| - 0.0062 17.1 0.0 0.2 12.2 0.0 2.3 2 0 0 2 2 2 1 C-terminal AAA-associated domain DUF4423 PF14394.6 gi|344209762|ref|YP_004785939.1| - 0.063 13.0 0.0 0.87 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) DUF2953 PF11167.8 gi|344209762|ref|YP_004785939.1| - 0.17 12.0 0.1 0.69 10.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) Exonuc_VII_S PF02609.16 gi|344209763|ref|YP_004785940.1| - 6.7e-12 45.3 1.0 7.7e-12 45.1 1.0 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit Wbp11 PF09429.10 gi|344209763|ref|YP_004785940.1| - 0.1 13.0 0.6 0.12 12.8 0.6 1.1 1 0 0 1 1 1 0 WW domain binding protein 11 Rnk_N PF14760.6 gi|344209763|ref|YP_004785940.1| - 0.22 12.0 4.1 1.6 9.2 4.1 2.1 1 1 0 1 1 1 0 Rnk N-terminus Exonuc_VII_L PF02601.15 gi|344209764|ref|YP_004785941.1| - 4.8e-53 180.7 0.4 6.6e-53 180.3 0.4 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.6 gi|344209764|ref|YP_004785941.1| - 1.2e-15 57.5 0.2 2.3e-15 56.6 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain SNARE PF05739.19 gi|344209764|ref|YP_004785941.1| - 0.015 15.3 0.1 0.049 13.6 0.1 1.9 1 0 0 1 1 1 0 SNARE domain DUF4407 PF14362.6 gi|344209764|ref|YP_004785941.1| - 0.016 14.6 1.8 0.026 13.9 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) tRNA_anti-codon PF01336.25 gi|344209764|ref|YP_004785941.1| - 0.034 14.1 0.2 0.059 13.4 0.2 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain SSB PF00436.25 gi|344209764|ref|YP_004785941.1| - 0.041 13.9 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 Single-strand binding protein family Pex24p PF06398.11 gi|344209764|ref|YP_004785941.1| - 0.094 11.7 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin DUF2721 PF11026.8 gi|344209764|ref|YP_004785941.1| - 0.19 11.6 2.8 0.33 10.9 1.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) KfrA_N PF11740.8 gi|344209764|ref|YP_004785941.1| - 0.74 10.5 5.4 0.68 10.6 3.4 2.0 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF4164 PF13747.6 gi|344209764|ref|YP_004785941.1| - 0.77 10.1 10.6 10 6.5 0.1 3.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF5345 PF17280.2 gi|344209764|ref|YP_004785941.1| - 9.1 6.3 6.0 89 3.2 6.0 2.4 1 1 0 1 1 1 0 Family of unknown function (DUF5345) AAA_31 PF13614.6 gi|344209765|ref|YP_004785942.1| - 1.9e-23 83.3 0.0 2.8e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344209765|ref|YP_004785942.1| - 2.3e-11 43.9 0.0 3.4e-11 43.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|344209765|ref|YP_004785942.1| - 4.9e-06 25.9 0.0 9.2e-06 25.1 0.0 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|344209765|ref|YP_004785942.1| - 1.7e-05 24.3 0.1 0.0087 15.4 0.0 2.2 1 1 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|344209765|ref|YP_004785942.1| - 4e-05 23.2 0.1 0.00012 21.6 0.1 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|344209765|ref|YP_004785942.1| - 0.0012 18.3 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|344209765|ref|YP_004785942.1| - 0.002 17.6 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|344209765|ref|YP_004785942.1| - 0.012 15.2 0.0 0.04 13.6 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Phosphodiest PF01663.22 gi|344209765|ref|YP_004785942.1| - 0.06 12.9 0.1 0.13 11.8 0.1 1.5 2 0 0 2 2 2 0 Type I phosphodiesterase / nucleotide pyrophosphatase PTPlike_phytase PF14566.6 gi|344209766|ref|YP_004785943.1| - 0.014 15.5 0.1 0.019 15.1 0.1 1.2 1 0 0 1 1 1 0 Inositol hexakisphosphate DUF5336 PF17270.2 gi|344209767|ref|YP_004785944.1| - 0.092 12.4 0.9 0.21 11.2 0.9 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5336) DUF2070 PF09843.9 gi|344209767|ref|YP_004785944.1| - 0.34 9.1 1.1 0.45 8.7 1.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|344209769|ref|YP_004785946.1| - 2.1e-37 128.7 0.0 3.4e-37 128.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|344209769|ref|YP_004785946.1| - 1.1e-30 107.2 0.3 1.4e-30 106.9 0.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|344209769|ref|YP_004785946.1| - 0.00034 20.1 0.1 0.018 14.5 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|344209769|ref|YP_004785946.1| - 0.0008 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|344209769|ref|YP_004785946.1| - 0.0037 17.5 0.3 0.025 14.8 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344209769|ref|YP_004785946.1| - 0.0096 16.3 0.0 0.088 13.2 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|344209769|ref|YP_004785946.1| - 0.013 15.9 1.3 0.045 14.1 1.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|344209769|ref|YP_004785946.1| - 0.019 14.7 0.1 0.048 13.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|344209769|ref|YP_004785946.1| - 0.02 15.5 0.1 0.069 13.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|344209769|ref|YP_004785946.1| - 0.024 15.1 0.0 0.039 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|344209769|ref|YP_004785946.1| - 0.033 14.2 0.4 0.14 12.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_21 PF13304.6 gi|344209769|ref|YP_004785946.1| - 0.037 13.8 0.0 0.13 12.0 0.0 1.8 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Cytidylate_kin PF02224.18 gi|344209769|ref|YP_004785946.1| - 0.055 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase IstB_IS21 PF01695.17 gi|344209769|ref|YP_004785946.1| - 0.067 12.9 0.0 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|344209769|ref|YP_004785946.1| - 0.079 13.0 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|344209769|ref|YP_004785946.1| - 0.084 12.1 0.0 0.21 10.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TsaE PF02367.17 gi|344209769|ref|YP_004785946.1| - 0.1 12.6 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Bax1-I PF01027.20 gi|344209769|ref|YP_004785946.1| - 0.11 12.3 0.1 0.11 12.3 0.1 2.4 3 0 0 3 3 3 0 Inhibitor of apoptosis-promoting Bax1 MMR_HSR1 PF01926.23 gi|344209769|ref|YP_004785946.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|344209769|ref|YP_004785946.1| - 0.13 11.7 0.0 0.32 10.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|344209769|ref|YP_004785946.1| - 0.14 11.8 2.5 1 9.1 2.5 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|344209769|ref|YP_004785946.1| - 0.17 11.7 0.5 9.2 6.1 0.0 2.4 1 1 1 2 2 2 0 NTPase DEAD PF00270.29 gi|344209769|ref|YP_004785946.1| - 0.2 11.4 0.1 22 4.8 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|344209769|ref|YP_004785946.1| - 0.71 9.4 4.6 0.57 9.7 0.3 2.7 2 2 1 3 3 3 0 AAA domain IucA_IucC PF04183.12 gi|344209770|ref|YP_004785947.1| - 2.3e-68 230.3 0.0 3.4e-68 229.8 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|344209770|ref|YP_004785947.1| - 3.4e-34 118.6 0.1 8.7e-34 117.3 0.1 1.8 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Gln-synt_C PF00120.24 gi|344209771|ref|YP_004785948.1| - 2.3e-90 303.1 0.0 2.8e-90 302.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|344209771|ref|YP_004785948.1| - 1.9e-13 50.2 0.0 4.8e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|344209771|ref|YP_004785948.1| - 0.084 12.6 0.0 0.87 9.4 0.0 2.4 2 0 0 2 2 2 0 Glutamine synthetase, beta-Grasp domain Aminotran_3 PF00202.21 gi|344209772|ref|YP_004785949.1| - 5.4e-96 321.7 0.0 6.3e-96 321.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III IucA_IucC PF04183.12 gi|344209773|ref|YP_004785950.1| - 4e-58 196.8 0.1 7e-58 196.0 0.1 1.4 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|344209773|ref|YP_004785950.1| - 8.1e-32 110.9 0.0 1.4e-31 110.1 0.0 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Peripla_BP_2 PF01497.18 gi|344209774|ref|YP_004785951.1| - 3e-19 69.5 0.1 7.5e-19 68.2 0.1 1.8 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|344209774|ref|YP_004785951.1| - 2.1e-05 24.2 0.4 3.3e-05 23.5 0.4 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pyr_redox_2 PF07992.14 gi|344209775|ref|YP_004785952.1| - 1.1e-06 28.1 4.1 0.0069 15.6 0.5 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|344209775|ref|YP_004785952.1| - 0.00014 20.7 0.1 0.71 8.5 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|344209775|ref|YP_004785952.1| - 0.00018 20.9 0.3 0.05 12.8 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|344209775|ref|YP_004785952.1| - 0.00045 20.4 0.2 0.0014 18.8 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|344209775|ref|YP_004785952.1| - 0.0014 18.0 6.1 0.0047 16.2 1.9 2.3 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|344209775|ref|YP_004785952.1| - 0.0016 17.9 0.9 0.0037 16.7 0.9 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344209775|ref|YP_004785952.1| - 0.087 12.0 1.1 0.18 11.0 0.4 1.8 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.22 gi|344209775|ref|YP_004785952.1| - 0.11 11.5 0.3 0.2 10.7 0.2 1.4 1 1 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|344209775|ref|YP_004785952.1| - 0.17 11.0 8.9 0.033 13.3 4.2 2.1 2 1 0 2 2 2 0 FAD binding domain NAD_binding_9 PF13454.6 gi|344209775|ref|YP_004785952.1| - 0.32 11.0 0.1 0.32 11.0 0.1 2.8 3 1 0 3 3 3 0 FAD-NAD(P)-binding DAO PF01266.24 gi|344209775|ref|YP_004785952.1| - 1.6 8.2 11.1 0.3 10.6 4.5 2.4 1 1 1 2 2 2 0 FAD dependent oxidoreductase zf-TFIIB PF13453.6 gi|344209777|ref|YP_004785954.1| - 0.0054 16.0 2.9 0.0054 16.0 2.9 1.9 2 0 0 2 2 2 1 Transcription factor zinc-finger DDE_3 PF13358.6 gi|344209777|ref|YP_004785954.1| - 0.059 13.1 0.1 0.21 11.3 0.2 1.8 2 0 0 2 2 2 0 DDE superfamily endonuclease DUF1660 PF07874.11 gi|344209777|ref|YP_004785954.1| - 0.23 12.0 3.0 2.6 8.6 0.4 3.0 2 1 0 2 2 2 0 Prophage protein (DUF1660) DUF2367 PF10164.9 gi|344209777|ref|YP_004785954.1| - 0.34 11.4 1.2 0.6 10.6 0.2 2.0 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2367) zinc_ribbon_9 PF14369.6 gi|344209777|ref|YP_004785954.1| - 0.46 10.8 4.6 5.7 7.3 4.4 2.7 1 1 1 2 2 2 0 zinc-ribbon zinc_ribbon_4 PF13717.6 gi|344209777|ref|YP_004785954.1| - 1.2 9.1 4.7 24 5.0 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|344209777|ref|YP_004785954.1| - 1.4 8.6 7.6 0.73 9.5 0.2 3.1 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|344209779|ref|YP_004785956.1| - 0.0027 17.2 0.9 0.0088 15.5 0.9 1.9 1 0 0 1 1 1 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|344209779|ref|YP_004785956.1| - 0.0036 17.2 0.7 0.0063 16.5 0.7 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DUF2387 PF09526.10 gi|344209779|ref|YP_004785956.1| - 0.018 15.2 0.3 0.018 15.2 0.3 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.7 gi|344209779|ref|YP_004785956.1| - 0.044 13.8 0.3 0.075 13.0 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|344209779|ref|YP_004785956.1| - 0.086 12.9 0.6 9.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.6 gi|344209779|ref|YP_004785956.1| - 0.14 11.5 1.4 0.26 10.6 1.4 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-Sec23_Sec24 PF04810.15 gi|344209779|ref|YP_004785956.1| - 0.18 11.9 0.1 0.3 11.2 0.1 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger zf-NADH-PPase PF09297.11 gi|344209779|ref|YP_004785956.1| - 0.46 10.2 2.1 4 7.2 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain MreB_Mbl PF06723.13 gi|344209780|ref|YP_004785957.1| - 1.2e-06 27.6 0.0 0.0048 15.8 0.0 2.2 2 0 0 2 2 2 2 MreB/Mbl protein FtsA PF14450.6 gi|344209780|ref|YP_004785957.1| - 0.012 16.0 0.0 0.031 14.7 0.0 1.7 2 0 0 2 2 2 0 Cell division protein FtsA Glyco_transf_52 PF07922.11 gi|344209780|ref|YP_004785957.1| - 0.17 11.1 0.1 0.27 10.5 0.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 52 Fig1 PF12351.8 gi|344209781|ref|YP_004785958.1| - 0.85 9.5 3.9 0.61 10.0 2.0 1.6 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 Yip1 PF04893.17 gi|344209781|ref|YP_004785958.1| - 6.5 6.4 17.9 22 4.7 17.9 1.7 1 1 0 1 1 1 0 Yip1 domain DoxX_3 PF13781.6 gi|344209783|ref|YP_004785960.1| - 7.9e-06 26.4 2.9 7.9e-06 26.4 2.9 1.7 2 0 0 2 2 2 1 DoxX-like family DoxX PF07681.12 gi|344209783|ref|YP_004785960.1| - 0.1 13.2 8.4 0.18 12.4 8.4 1.6 1 0 0 1 1 1 0 DoxX DUF4267 PF14087.6 gi|344209783|ref|YP_004785960.1| - 0.35 10.9 5.1 0.49 10.5 5.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4267) E1-E2_ATPase PF00122.20 gi|344209783|ref|YP_004785960.1| - 5.9 6.4 8.5 39 3.7 0.8 1.9 1 1 1 2 2 2 0 E1-E2 ATPase VIT1 PF01988.19 gi|344209784|ref|YP_004785961.1| - 1.2e-09 38.3 2.6 1.2e-09 38.3 2.6 2.0 1 1 1 2 2 2 1 VIT family ATP-synt_J PF04911.12 gi|344209784|ref|YP_004785961.1| - 0.3 10.7 0.4 0.73 9.5 0.4 1.6 1 0 0 1 1 1 0 ATP synthase j chain GPHR_N PF12537.8 gi|344209784|ref|YP_004785961.1| - 5.1 7.2 7.8 1.3e+02 2.8 7.8 2.8 1 1 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF211 PF02680.14 gi|344209785|ref|YP_004785962.1| - 1.2e-34 118.3 0.3 1.4e-34 118.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|344209785|ref|YP_004785962.1| - 0.034 14.6 0.1 0.073 13.5 0.1 1.6 1 0 0 1 1 1 0 Heavy-metal-associated domain Usp PF00582.26 gi|344209786|ref|YP_004785963.1| - 2.8e-61 206.1 8.5 3.7e-30 105.3 1.7 2.0 2 0 0 2 2 2 2 Universal stress protein family CHB_HEX_C_1 PF13290.6 gi|344209786|ref|YP_004785963.1| - 0.078 13.0 0.2 0.15 12.1 0.2 1.5 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain FAM25 PF15825.5 gi|344209786|ref|YP_004785963.1| - 1.4 9.3 7.6 6.3 7.2 0.2 3.3 3 0 0 3 3 3 0 FAM25 family HTH_32 PF13565.6 gi|344209787|ref|YP_004785964.1| - 0.046 14.3 1.6 0.48 11.1 0.0 2.6 2 1 0 2 2 2 0 Homeodomain-like domain TMEM119 PF15724.5 gi|344209787|ref|YP_004785964.1| - 0.076 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 TMEM119 family DUF2757 PF10955.8 gi|344209787|ref|YP_004785964.1| - 0.099 12.9 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) PyrI_C PF02748.15 gi|344209789|ref|YP_004785966.1| - 0.0058 16.5 0.2 0.022 14.7 0.0 1.9 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-ribbon_3 PF13248.6 gi|344209789|ref|YP_004785966.1| - 0.012 14.9 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-FCS PF06467.14 gi|344209789|ref|YP_004785966.1| - 0.027 14.4 1.7 0.061 13.3 1.7 1.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|344209789|ref|YP_004785966.1| - 0.068 13.5 0.3 0.068 13.5 0.3 1.7 2 0 0 2 2 2 0 Archaeal TRASH domain zf-C6H2 PF15801.5 gi|344209789|ref|YP_004785966.1| - 0.11 12.8 0.1 0.11 12.8 0.1 1.9 3 0 0 3 3 3 0 zf-MYND-like zinc finger, mRNA-binding Pyr_redox_2 PF07992.14 gi|344209790|ref|YP_004785967.1| - 2.7e-66 223.8 1.8 2.7e-66 223.8 1.8 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|344209790|ref|YP_004785967.1| - 6.1e-37 126.3 1.8 1.4e-36 125.1 1.8 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|344209790|ref|YP_004785967.1| - 1.3e-20 73.8 4.6 1.3e-16 60.9 0.0 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344209790|ref|YP_004785967.1| - 8.6e-10 38.3 1.6 0.00034 20.0 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344209790|ref|YP_004785967.1| - 8.3e-09 35.0 5.0 6.4e-07 28.8 2.6 2.7 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|344209790|ref|YP_004785967.1| - 2.6e-08 33.4 12.1 4.3e-07 29.4 2.8 4.1 2 1 2 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344209790|ref|YP_004785967.1| - 3.2e-08 33.7 4.7 0.00014 22.0 1.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|344209790|ref|YP_004785967.1| - 1.9e-07 30.8 1.3 1.9e-07 30.8 1.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344209790|ref|YP_004785967.1| - 2.4e-07 29.8 5.6 5.6e-05 22.0 0.8 3.6 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|344209790|ref|YP_004785967.1| - 4.2e-07 29.5 8.9 0.00092 18.6 1.0 3.2 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|344209790|ref|YP_004785967.1| - 2.6e-06 27.2 10.0 0.0099 15.5 1.4 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|344209790|ref|YP_004785967.1| - 2.9e-05 23.7 1.0 0.0041 16.7 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|344209790|ref|YP_004785967.1| - 7.8e-05 22.1 11.0 0.012 14.9 0.1 2.9 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|344209790|ref|YP_004785967.1| - 0.00012 21.3 2.9 0.034 13.2 0.6 3.3 3 1 0 3 3 3 1 Lycopene cyclase protein XdhC_C PF13478.6 gi|344209790|ref|YP_004785967.1| - 0.00073 20.0 0.3 0.077 13.5 0.1 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|344209790|ref|YP_004785967.1| - 0.0012 18.8 5.4 0.015 15.2 0.0 2.8 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|344209790|ref|YP_004785967.1| - 0.0012 18.1 2.6 0.025 13.8 0.3 2.3 2 0 0 2 2 2 1 Thi4 family ATPgrasp_N PF18130.1 gi|344209790|ref|YP_004785967.1| - 0.0055 17.2 0.9 0.64 10.6 0.1 3.2 3 0 0 3 3 2 1 ATP-grasp N-terminal domain TrkA_N PF02254.18 gi|344209790|ref|YP_004785967.1| - 0.013 15.8 2.0 0.033 14.5 0.1 2.4 2 0 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.14 gi|344209790|ref|YP_004785967.1| - 0.022 13.6 1.4 0.095 11.5 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 gi|344209790|ref|YP_004785967.1| - 0.028 13.8 0.2 0.68 9.3 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AIRS PF00586.24 gi|344209790|ref|YP_004785967.1| - 0.088 13.5 0.3 0.83 10.4 0.0 2.7 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain NAD_binding_9 PF13454.6 gi|344209790|ref|YP_004785967.1| - 0.42 10.6 4.7 2.1 8.4 0.1 3.4 3 1 1 4 4 4 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.23 gi|344209791|ref|YP_004785968.1| - 1.8e-87 292.6 0.0 2.8e-87 292.0 0.0 1.3 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|344209791|ref|YP_004785968.1| - 3.6e-23 81.2 0.7 7.3e-23 80.2 0.7 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|344209791|ref|YP_004785968.1| - 5.2e-13 49.1 1.1 3.8e-09 36.7 0.5 2.7 2 0 0 2 2 2 2 e3 binding domain GCV_H PF01597.19 gi|344209791|ref|YP_004785968.1| - 0.00017 21.5 0.1 0.00056 19.8 0.1 1.9 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.6 gi|344209791|ref|YP_004785968.1| - 0.004 16.9 0.6 0.004 16.9 0.6 3.5 3 1 1 4 4 4 1 Biotin-lipoyl like HlyD_3 PF13437.6 gi|344209791|ref|YP_004785968.1| - 0.0055 17.4 4.4 0.071 13.8 0.4 3.3 2 1 1 3 3 3 1 HlyD family secretion protein Paramyxo_ncap PF00973.19 gi|344209791|ref|YP_004785968.1| - 9.5 5.0 8.1 15 4.3 8.1 1.3 1 0 0 1 1 1 0 Paramyxovirus nucleocapsid protein Transket_pyr PF02779.24 gi|344209792|ref|YP_004785969.1| - 1.2e-48 165.2 0.0 1.8e-48 164.6 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|344209792|ref|YP_004785969.1| - 3e-34 117.6 0.0 6.2e-34 116.6 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|344209793|ref|YP_004785970.1| - 1.5e-77 260.5 0.0 1.8e-77 260.2 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|344209793|ref|YP_004785970.1| - 2.8e-06 26.7 0.0 5.1e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|344209793|ref|YP_004785970.1| - 0.0013 18.6 0.3 0.0078 16.0 0.3 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|344209793|ref|YP_004785970.1| - 0.0051 15.8 0.0 0.013 14.5 0.0 1.5 1 1 1 2 2 2 1 Transketolase, thiamine diphosphate binding domain CAF1-p150_N PF15557.6 gi|344209793|ref|YP_004785970.1| - 0.062 13.2 0.4 0.096 12.6 0.4 1.2 1 0 0 1 1 1 0 CAF1 complex subunit p150, region binding to PCNA ABC_tran PF00005.27 gi|344209794|ref|YP_004785971.1| - 1.7e-28 99.9 0.0 2.5e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209794|ref|YP_004785971.1| - 5.1e-12 46.2 0.2 2.4e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209794|ref|YP_004785971.1| - 0.00016 21.2 1.5 0.0036 16.8 0.2 2.3 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344209794|ref|YP_004785971.1| - 0.0017 18.1 0.1 0.0044 16.7 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344209794|ref|YP_004785971.1| - 0.0022 18.6 0.2 0.0049 17.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|344209794|ref|YP_004785971.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344209794|ref|YP_004785971.1| - 0.0084 16.4 0.4 0.044 14.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344209794|ref|YP_004785971.1| - 0.013 15.2 0.2 0.021 14.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344209794|ref|YP_004785971.1| - 0.014 15.1 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.7 gi|344209794|ref|YP_004785971.1| - 0.017 14.1 0.0 0.036 13.0 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.6 gi|344209794|ref|YP_004785971.1| - 0.029 14.7 0.1 0.048 14.1 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|344209794|ref|YP_004785971.1| - 0.067 13.3 0.1 0.12 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344209794|ref|YP_004785971.1| - 0.12 12.9 0.2 0.72 10.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|344209794|ref|YP_004785971.1| - 0.13 12.7 0.7 2.1 8.8 0.1 2.3 1 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|344209794|ref|YP_004785971.1| - 0.15 11.3 0.3 0.22 10.7 0.3 1.2 1 0 0 1 1 1 0 NB-ARC domain Spore_IV_A PF09547.10 gi|344209794|ref|YP_004785971.1| - 0.15 10.9 0.1 0.22 10.4 0.1 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) SbcCD_C PF13558.6 gi|344209794|ref|YP_004785971.1| - 0.45 10.8 3.2 6.5 7.1 3.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.27 gi|344209795|ref|YP_004785972.1| - 3.8e-30 105.2 0.0 5.6e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209795|ref|YP_004785972.1| - 9e-12 45.4 0.8 3.6e-05 23.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|344209795|ref|YP_004785972.1| - 9.3e-07 28.6 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.6 gi|344209795|ref|YP_004785972.1| - 1.3e-05 24.8 0.1 3.2e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|344209795|ref|YP_004785972.1| - 4.9e-05 22.9 0.6 0.0031 17.0 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|344209795|ref|YP_004785972.1| - 0.00034 21.2 2.2 0.00057 20.4 1.9 1.7 1 1 0 1 1 1 1 AAA domain MukB PF04310.12 gi|344209795|ref|YP_004785972.1| - 0.0038 17.1 0.1 0.0089 15.9 0.1 1.6 1 1 0 1 1 1 1 MukB N-terminal AAA_27 PF13514.6 gi|344209795|ref|YP_004785972.1| - 0.091 12.3 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|344209795|ref|YP_004785972.1| - 0.1 12.5 0.1 0.26 11.2 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_15 PF13175.6 gi|344209795|ref|YP_004785972.1| - 0.12 12.0 0.1 0.26 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|344209796|ref|YP_004785973.1| - 1e-38 133.1 30.7 1e-38 133.1 30.7 2.1 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|344209797|ref|YP_004785974.1| - 1.9e-33 115.8 54.5 1.9e-33 115.8 54.5 2.3 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Aminotran_1_2 PF00155.21 gi|344209798|ref|YP_004785975.1| - 2.5e-60 204.6 0.0 2.8e-60 204.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|344209798|ref|YP_004785975.1| - 1.7e-12 47.3 0.0 2.7e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|344209798|ref|YP_004785975.1| - 2.6e-06 26.6 0.0 3.9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|344209798|ref|YP_004785975.1| - 1.5e-05 23.7 0.0 2.2e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|344209798|ref|YP_004785975.1| - 3.7e-05 23.2 0.0 6.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Peripla_BP_6 PF13458.6 gi|344209799|ref|YP_004785976.1| - 6e-34 118.2 1.2 9.1e-34 117.6 1.2 1.3 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|344209799|ref|YP_004785976.1| - 4.1e-19 68.9 0.0 1.5e-18 67.0 0.0 1.7 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|344209799|ref|YP_004785976.1| - 0.0063 16.3 1.6 0.0063 16.3 1.6 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence TPP_enzyme_M PF00205.22 gi|344209800|ref|YP_004785977.1| - 1.1e-37 128.8 0.8 2.3e-37 127.8 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.18 gi|344209800|ref|YP_004785977.1| - 6.6e-33 113.7 2.6 3.9e-32 111.2 0.0 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|344209800|ref|YP_004785977.1| - 7.2e-33 113.5 2.0 1.6e-32 112.4 2.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Epimerase PF01370.21 gi|344209801|ref|YP_004785978.1| - 1.6e-41 142.4 0.6 2e-41 142.0 0.6 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344209801|ref|YP_004785978.1| - 5.5e-37 127.9 0.1 1.5e-36 126.5 0.1 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|344209801|ref|YP_004785978.1| - 3.2e-19 69.0 0.0 4.5e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|344209801|ref|YP_004785978.1| - 1.1e-12 47.7 1.1 1.4e-12 47.4 1.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|344209801|ref|YP_004785978.1| - 2e-10 40.8 1.3 2.3e-10 40.7 0.2 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|344209801|ref|YP_004785978.1| - 3.2e-09 36.3 0.9 2.3e-06 27.0 0.9 2.3 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|344209801|ref|YP_004785978.1| - 6.5e-09 35.3 0.0 4.3e-08 32.6 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|344209801|ref|YP_004785978.1| - 1.2e-06 28.2 0.3 2e-06 27.4 0.3 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344209801|ref|YP_004785978.1| - 9.1e-06 25.7 0.5 2.6e-05 24.2 0.5 1.8 1 1 0 1 1 1 1 KR domain NmrA PF05368.13 gi|344209801|ref|YP_004785978.1| - 0.00031 20.4 0.2 0.00057 19.5 0.2 1.5 1 0 0 1 1 1 1 NmrA-like family Peptidase_M24 PF00557.24 gi|344209802|ref|YP_004785979.1| - 1.3e-26 93.6 0.0 1.8e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|344209802|ref|YP_004785979.1| - 8e-05 23.3 0.0 0.00017 22.2 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain RCC1_2 PF13540.6 gi|344209802|ref|YP_004785979.1| - 0.047 13.5 0.4 0.099 12.5 0.4 1.5 1 0 0 1 1 1 0 Regulator of chromosome condensation (RCC1) repeat Bac_luciferase PF00296.20 gi|344209803|ref|YP_004785980.1| - 3.2e-52 177.9 0.2 3.8e-52 177.7 0.2 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase 4HBT PF03061.22 gi|344209804|ref|YP_004785981.1| - 7.3e-16 58.3 0.6 1.1e-15 57.8 0.6 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|344209804|ref|YP_004785981.1| - 1.8e-07 31.3 0.0 2.5e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|344209804|ref|YP_004785981.1| - 0.015 15.5 0.1 0.02 15.2 0.1 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily PS-DH PF14765.6 gi|344209804|ref|YP_004785981.1| - 0.029 13.6 0.1 0.029 13.6 0.1 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase AMP-binding PF00501.28 gi|344209805|ref|YP_004785982.1| - 3.5e-75 253.2 0.0 5.3e-75 252.6 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344209805|ref|YP_004785982.1| - 6.3e-21 75.1 0.2 1.5e-20 73.9 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|344209805|ref|YP_004785982.1| - 2.9e-10 39.9 0.1 2.9e-10 39.9 0.1 3.8 5 0 0 5 5 5 1 Acetyl-coenzyme A synthetase N-terminus F420_oxidored PF03807.17 gi|344209806|ref|YP_004785983.1| - 3.8e-18 65.9 0.5 1e-17 64.5 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|344209806|ref|YP_004785983.1| - 0.0014 18.6 1.0 0.0023 17.8 1.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_Gly3P_dh_N PF01210.23 gi|344209806|ref|YP_004785983.1| - 0.0015 18.5 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.24 gi|344209806|ref|YP_004785983.1| - 0.0028 18.1 0.4 0.011 16.2 0.1 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.10 gi|344209806|ref|YP_004785983.1| - 0.0084 16.0 0.3 0.017 15.0 0.3 1.4 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 gi|344209806|ref|YP_004785983.1| - 0.016 14.7 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family PDH PF02153.17 gi|344209806|ref|YP_004785983.1| - 0.018 14.0 0.0 0.03 13.3 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase 3HCDH_N PF02737.18 gi|344209806|ref|YP_004785983.1| - 0.095 12.6 0.3 0.31 10.9 0.2 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|344209806|ref|YP_004785983.1| - 0.13 12.4 0.1 0.24 11.6 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Aldedh PF00171.22 gi|344209807|ref|YP_004785984.1| - 8.8e-138 459.7 0.0 9.9e-138 459.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family EthD PF07110.11 gi|344209808|ref|YP_004785985.1| - 2.9e-24 86.0 6.4 5e-11 43.6 0.6 3.5 2 2 0 2 2 2 2 EthD domain MmlI PF09448.10 gi|344209808|ref|YP_004785985.1| - 1.4e-23 83.6 1.2 1.4e-11 44.9 0.0 3.9 2 2 0 2 2 2 2 Methylmuconolactone methyl-isomerase ABM PF03992.16 gi|344209808|ref|YP_004785985.1| - 0.0093 16.1 0.0 6.3 7.0 0.0 3.0 2 2 1 3 3 3 2 Antibiotic biosynthesis monooxygenase HD PF01966.22 gi|344209809|ref|YP_004785986.1| - 3.6e-10 40.1 0.1 4.9e-10 39.7 0.1 1.1 1 0 0 1 1 1 1 HD domain Glu_dehyd_C PF16912.5 gi|344209810|ref|YP_004785987.1| - 4.1e-89 297.6 0.0 5.1e-89 297.3 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|344209810|ref|YP_004785987.1| - 6e-11 42.2 0.0 9.4e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344209810|ref|YP_004785987.1| - 1.1e-05 25.4 0.0 1.9e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|344209810|ref|YP_004785987.1| - 0.0016 18.3 0.0 0.0037 17.1 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Shikimate_DH PF01488.20 gi|344209810|ref|YP_004785987.1| - 0.04 14.0 0.0 0.066 13.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase IclR PF01614.18 gi|344209811|ref|YP_004785988.1| - 1.9e-26 92.4 0.0 3.6e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344209811|ref|YP_004785988.1| - 2.1e-14 53.1 0.1 2.7e-13 49.5 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344209811|ref|YP_004785988.1| - 1e-07 31.7 0.0 2.5e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344209811|ref|YP_004785988.1| - 7.4e-07 29.0 0.0 2.9e-06 27.0 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|344209811|ref|YP_004785988.1| - 8e-06 25.3 0.0 1.6e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344209811|ref|YP_004785988.1| - 1.1e-05 25.2 0.0 5e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|344209811|ref|YP_004785988.1| - 2.8e-05 24.1 0.0 7.8e-05 22.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|344209811|ref|YP_004785988.1| - 0.00058 19.7 0.0 0.0014 18.5 0.0 1.7 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|344209811|ref|YP_004785988.1| - 0.0022 17.9 0.0 0.0041 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|344209811|ref|YP_004785988.1| - 0.0083 16.4 0.0 0.022 15.1 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|344209811|ref|YP_004785988.1| - 0.025 14.6 0.0 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_22 PF13309.6 gi|344209811|ref|YP_004785988.1| - 0.06 13.4 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 gi|344209811|ref|YP_004785988.1| - 0.07 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_40 PF14493.6 gi|344209811|ref|YP_004785988.1| - 0.11 13.0 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4399 PF14347.6 gi|344209811|ref|YP_004785988.1| - 0.13 12.7 0.1 0.27 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4399) HTH_23 PF13384.6 gi|344209811|ref|YP_004785988.1| - 0.13 12.1 0.0 0.36 10.7 0.0 1.7 2 0 0 2 2 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|344209811|ref|YP_004785988.1| - 0.13 12.4 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MR_MLE_C PF13378.6 gi|344209812|ref|YP_004785989.1| - 4.5e-57 193.1 0.1 6.2e-57 192.7 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344209812|ref|YP_004785989.1| - 5.9e-26 91.0 0.0 1.8e-25 89.4 0.0 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PEP_mutase PF13714.6 gi|344209812|ref|YP_004785989.1| - 0.04 13.4 0.1 0.07 12.6 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase SIS PF01380.22 gi|344209813|ref|YP_004785990.1| - 4e-27 94.7 0.5 6.7e-19 68.0 0.2 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|344209813|ref|YP_004785990.1| - 8.7e-06 25.8 2.2 0.00077 19.5 0.0 2.7 3 1 0 3 3 3 2 SIS domain SBP_bac_8 PF13416.6 gi|344209814|ref|YP_004785991.1| - 2.1e-27 96.7 4.2 2.1e-27 96.7 4.2 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344209814|ref|YP_004785991.1| - 6.7e-19 69.0 6.2 6.7e-19 69.0 6.2 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|344209814|ref|YP_004785991.1| - 4.5e-05 23.0 0.4 0.0032 16.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344209814|ref|YP_004785991.1| - 0.013 15.4 1.9 0.022 14.6 1.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|344209815|ref|YP_004785992.1| - 1.9e-21 76.6 14.1 1.9e-21 76.6 14.1 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1761 PF08570.10 gi|344209815|ref|YP_004785992.1| - 0.044 14.0 0.9 0.044 14.0 0.9 3.3 3 2 1 4 4 4 0 Protein of unknown function (DUF1761) BPD_transp_1 PF00528.22 gi|344209816|ref|YP_004785993.1| - 2.1e-19 70.0 14.2 2.1e-19 70.0 14.2 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_3 PF00933.21 gi|344209817|ref|YP_004785994.1| - 1.8e-100 336.4 0.0 2.3e-100 336.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|344209817|ref|YP_004785994.1| - 0.00035 20.6 0.2 0.00083 19.4 0.1 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain PIG-L PF02585.17 gi|344209818|ref|YP_004785995.1| - 8.8e-33 113.7 0.4 1.3e-32 113.1 0.4 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|344209818|ref|YP_004785995.1| - 0.092 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 SelA PF03841.13 gi|344209819|ref|YP_004785996.1| - 1.4e-08 34.2 4.0 6.2e-07 28.7 1.1 3.6 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|344209819|ref|YP_004785996.1| - 2.1e-08 33.5 0.0 4e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|344209819|ref|YP_004785996.1| - 3.5e-06 26.6 0.3 7.5e-06 25.5 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|344209819|ref|YP_004785996.1| - 6.5e-06 24.9 0.0 1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|344209819|ref|YP_004785996.1| - 5.4e-05 22.6 0.0 0.00012 21.5 0.0 1.6 2 0 0 2 2 2 1 Beta-eliminating lyase SepSecS PF05889.13 gi|344209819|ref|YP_004785996.1| - 0.00037 19.3 0.0 0.00049 18.9 0.0 1.2 1 0 0 1 1 1 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS NAD_binding_3 PF03447.16 gi|344209819|ref|YP_004785996.1| - 0.012 16.3 0.4 0.42 11.3 0.0 2.5 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain ABC_tran PF00005.27 gi|344209820|ref|YP_004785997.1| - 1.1e-30 106.9 0.0 1.8e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|344209820|ref|YP_004785997.1| - 9.5e-14 52.0 0.0 7.2e-12 46.0 0.0 2.9 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|344209820|ref|YP_004785997.1| - 2e-13 50.3 0.4 5.5e-13 48.9 0.4 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|344209820|ref|YP_004785997.1| - 5.6e-08 33.0 0.0 0.00081 19.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|344209820|ref|YP_004785997.1| - 1.5e-06 28.6 2.0 4.8e-06 27.0 0.0 2.8 4 0 0 4 4 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|344209820|ref|YP_004785997.1| - 4.9e-05 22.9 0.3 0.00025 20.6 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344209820|ref|YP_004785997.1| - 0.00048 20.4 0.7 0.0022 18.3 0.7 2.0 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|344209820|ref|YP_004785997.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain TOBE PF03459.17 gi|344209820|ref|YP_004785997.1| - 0.0019 18.5 0.3 0.0046 17.2 0.3 1.8 1 0 0 1 1 1 1 TOBE domain RsgA_GTPase PF03193.16 gi|344209820|ref|YP_004785997.1| - 0.0026 17.7 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|344209820|ref|YP_004785997.1| - 0.0036 17.7 0.1 0.0061 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|344209820|ref|YP_004785997.1| - 0.02 14.5 0.1 0.39 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|344209820|ref|YP_004785997.1| - 0.023 14.1 0.1 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_30 PF13604.6 gi|344209820|ref|YP_004785997.1| - 0.024 14.4 0.0 0.042 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|344209820|ref|YP_004785997.1| - 0.034 13.9 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|344209820|ref|YP_004785997.1| - 0.035 14.5 0.1 0.15 12.5 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MIT_C PF16565.5 gi|344209820|ref|YP_004785997.1| - 0.049 13.6 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_15 PF13175.6 gi|344209820|ref|YP_004785997.1| - 0.057 13.1 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.18 gi|344209820|ref|YP_004785997.1| - 0.073 12.4 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_33 PF13671.6 gi|344209820|ref|YP_004785997.1| - 0.12 12.5 1.4 0.31 11.2 1.4 1.9 1 1 0 1 1 1 0 AAA domain Hexapep_2 PF14602.6 gi|344209820|ref|YP_004785997.1| - 0.5 10.2 3.0 6.5 6.6 0.2 2.9 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase IclR PF01614.18 gi|344209821|ref|YP_004785998.1| - 3e-17 62.7 0.0 9.4e-17 61.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344209821|ref|YP_004785998.1| - 9.1e-15 54.2 0.6 6.1e-14 51.5 0.2 2.5 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344209821|ref|YP_004785998.1| - 1.2e-06 28.3 0.1 2.4e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|344209821|ref|YP_004785998.1| - 3.4e-06 26.5 0.0 9.6e-06 25.1 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|344209821|ref|YP_004785998.1| - 3.5e-06 27.0 0.1 1.8e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344209821|ref|YP_004785998.1| - 6.9e-05 22.7 0.1 0.00014 21.7 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344209821|ref|YP_004785998.1| - 0.00063 19.6 0.1 0.0013 18.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|344209821|ref|YP_004785998.1| - 0.00067 19.5 0.1 0.0012 18.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|344209821|ref|YP_004785998.1| - 0.0029 17.8 0.1 0.006 16.8 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|344209821|ref|YP_004785998.1| - 0.0042 17.0 0.0 0.0082 16.1 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|344209821|ref|YP_004785998.1| - 0.0061 16.9 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF742 PF05331.11 gi|344209821|ref|YP_004785998.1| - 0.0072 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) RPA_C PF08784.11 gi|344209821|ref|YP_004785998.1| - 0.014 16.0 0.0 0.03 15.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_34 PF13601.6 gi|344209821|ref|YP_004785998.1| - 0.017 15.3 0.1 0.037 14.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|344209821|ref|YP_004785998.1| - 0.023 14.5 0.0 0.061 13.1 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_9 PF08221.11 gi|344209821|ref|YP_004785998.1| - 0.027 14.6 0.1 0.082 13.0 0.1 1.8 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344209821|ref|YP_004785998.1| - 0.057 13.3 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|344209821|ref|YP_004785998.1| - 0.064 12.9 0.4 0.18 11.5 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|344209821|ref|YP_004785998.1| - 0.099 12.6 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix ABC_tran PF00005.27 gi|344209822|ref|YP_004785999.1| - 2.7e-32 112.2 0.0 4e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209822|ref|YP_004785999.1| - 3e-09 37.1 3.2 0.00018 21.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344209822|ref|YP_004785999.1| - 0.0056 16.4 0.1 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 gi|344209822|ref|YP_004785999.1| - 0.0056 16.6 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_22 PF13401.6 gi|344209822|ref|YP_004785999.1| - 0.013 15.8 0.7 0.13 12.6 0.7 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|344209822|ref|YP_004785999.1| - 0.014 14.6 0.2 0.024 13.8 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.6 gi|344209822|ref|YP_004785999.1| - 0.016 15.6 0.2 0.027 14.9 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|344209822|ref|YP_004785999.1| - 0.022 14.4 0.1 0.099 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|344209822|ref|YP_004785999.1| - 0.038 13.7 0.6 0.1 12.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344209822|ref|YP_004785999.1| - 0.043 13.9 0.5 0.087 12.9 0.5 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|344209822|ref|YP_004785999.1| - 0.047 13.0 0.0 0.092 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|344209822|ref|YP_004785999.1| - 0.052 14.0 0.0 0.097 13.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|344209822|ref|YP_004785999.1| - 0.074 12.5 0.2 4.8 6.5 0.2 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|344209822|ref|YP_004785999.1| - 0.074 12.7 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|344209822|ref|YP_004785999.1| - 0.076 12.7 0.2 0.15 11.7 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain Sigma70_r1_1 PF03979.14 gi|344209822|ref|YP_004785999.1| - 0.11 12.5 0.3 0.27 11.3 0.1 1.7 2 0 0 2 2 1 0 Sigma-70 factor, region 1.1 NACHT PF05729.12 gi|344209822|ref|YP_004785999.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|344209822|ref|YP_004785999.1| - 0.21 11.5 2.3 0.15 12.0 0.7 1.5 2 0 0 2 2 1 0 RsgA GTPase AAA_23 PF13476.6 gi|344209822|ref|YP_004785999.1| - 0.26 11.8 0.3 0.47 10.9 0.2 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|344209823|ref|YP_004786000.1| - 4.4e-26 92.0 0.0 6e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|344209823|ref|YP_004786000.1| - 1.2e-09 37.8 0.1 2.7e-09 36.7 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|344209823|ref|YP_004786000.1| - 0.00016 22.3 0.0 0.00018 22.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344209823|ref|YP_004786000.1| - 0.0021 17.8 0.3 0.0035 17.1 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|344209823|ref|YP_004786000.1| - 0.0022 17.9 1.6 0.034 14.0 0.5 2.2 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209823|ref|YP_004786000.1| - 0.0031 17.0 0.0 0.0045 16.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|344209823|ref|YP_004786000.1| - 0.0036 16.9 0.1 0.0081 15.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|344209823|ref|YP_004786000.1| - 0.017 14.4 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|344209823|ref|YP_004786000.1| - 0.039 14.3 0.2 0.084 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|344209823|ref|YP_004786000.1| - 0.063 13.0 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|344209823|ref|YP_004786000.1| - 0.065 13.7 0.3 0.17 12.3 0.1 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) BPD_transp_2 PF02653.16 gi|344209824|ref|YP_004786001.1| - 1e-83 280.6 79.1 8.7e-48 162.8 37.1 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|344209824|ref|YP_004786001.1| - 0.062 13.0 0.3 0.6 9.9 0.0 2.7 3 0 0 3 3 3 0 Cytochrome oxidase complex assembly protein 1 Peripla_BP_6 PF13458.6 gi|344209825|ref|YP_004786002.1| - 4.5e-60 204.1 11.9 5.5e-60 203.8 11.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344209825|ref|YP_004786002.1| - 1.9e-27 96.2 0.3 2.3e-27 96.0 0.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|344209825|ref|YP_004786002.1| - 2.1e-10 40.2 0.1 4.2e-10 39.2 0.1 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|344209825|ref|YP_004786002.1| - 0.0012 18.6 3.7 0.0036 17.1 3.7 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|344209825|ref|YP_004786002.1| - 0.025 13.9 0.5 0.071 12.5 0.5 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Penicil_amidase PF01804.18 gi|344209826|ref|YP_004786003.1| - 1e-117 394.9 13.1 1e-117 394.9 13.1 1.3 2 0 0 2 2 2 1 Penicillin amidase TAT_signal PF10518.9 gi|344209826|ref|YP_004786003.1| - 0.00059 19.6 0.1 0.00059 19.6 0.1 3.2 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Glyoxalase_4 PF13669.6 gi|344209827|ref|YP_004786004.1| - 3.3e-15 56.3 0.0 4.3e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|344209827|ref|YP_004786004.1| - 1.9e-05 24.8 0.1 4.9e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|344209827|ref|YP_004786004.1| - 8.1e-05 22.8 0.0 9.9e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MmlI PF09448.10 gi|344209828|ref|YP_004786005.1| - 2.4e-15 57.0 0.2 4.3e-14 52.9 0.2 2.0 1 1 0 1 1 1 1 Methylmuconolactone methyl-isomerase EthD PF07110.11 gi|344209828|ref|YP_004786005.1| - 1.8e-14 54.7 3.9 6e-14 53.0 3.9 1.7 1 1 0 1 1 1 1 EthD domain Dabb PF07876.12 gi|344209828|ref|YP_004786005.1| - 0.084 13.5 0.0 0.097 13.3 0.0 1.2 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain IclR PF01614.18 gi|344209829|ref|YP_004786006.1| - 1.5e-28 99.2 0.0 3.6e-28 98.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344209829|ref|YP_004786006.1| - 5.4e-11 42.1 0.2 1.2e-10 41.0 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|344209829|ref|YP_004786006.1| - 4.4e-05 23.1 0.1 0.00011 21.9 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|344209829|ref|YP_004786006.1| - 0.00054 19.8 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|344209829|ref|YP_004786006.1| - 0.0036 17.3 0.1 0.016 15.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|344209829|ref|YP_004786006.1| - 0.0049 16.8 0.1 0.019 14.9 0.0 2.0 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|344209829|ref|YP_004786006.1| - 0.0098 15.8 0.1 0.025 14.5 0.1 1.7 1 0 0 1 1 1 1 MarR family SpoIIID PF12116.8 gi|344209829|ref|YP_004786006.1| - 0.015 15.3 0.3 0.038 14.1 0.3 1.7 1 1 0 1 1 1 0 Stage III sporulation protein D MarR_2 PF12802.7 gi|344209829|ref|YP_004786006.1| - 0.017 15.0 0.0 0.065 13.1 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF1803 PF08820.10 gi|344209829|ref|YP_004786006.1| - 0.018 15.1 0.2 0.038 14.0 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) HTH_45 PF14947.6 gi|344209829|ref|YP_004786006.1| - 0.023 14.7 0.1 0.039 13.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|344209829|ref|YP_004786006.1| - 0.04 13.5 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ECH_1 PF00378.20 gi|344209830|ref|YP_004786007.1| - 9.9e-68 228.2 0.0 1.1e-67 228.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|344209830|ref|YP_004786007.1| - 4.7e-37 128.2 0.0 5.6e-30 105.0 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|344209831|ref|YP_004786008.1| - 2.1e-63 213.4 4.3 2.9e-63 213.0 4.3 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|344209831|ref|YP_004786008.1| - 1.3e-31 109.1 0.1 6.4e-31 106.8 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|344209831|ref|YP_004786008.1| - 4.7e-06 26.7 0.3 1.1e-05 25.5 0.3 1.6 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|344209831|ref|YP_004786008.1| - 1.2e-05 24.9 0.3 2e-05 24.2 0.3 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|344209831|ref|YP_004786008.1| - 0.00035 20.8 2.2 0.00035 20.8 2.2 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|344209831|ref|YP_004786008.1| - 0.013 15.7 1.0 0.043 14.1 1.0 1.9 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|344209831|ref|YP_004786008.1| - 0.027 15.0 6.4 0.066 13.8 3.4 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent MORN PF02493.20 gi|344209831|ref|YP_004786008.1| - 0.045 13.6 0.1 0.1 12.5 0.1 1.6 1 0 0 1 1 1 0 MORN repeat ApbA PF02558.16 gi|344209831|ref|YP_004786008.1| - 0.09 12.4 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|344209831|ref|YP_004786008.1| - 0.16 11.5 0.5 0.25 10.9 0.5 1.3 1 0 0 1 1 1 0 NmrA-like family Thiolase_N PF00108.23 gi|344209832|ref|YP_004786009.1| - 3.7e-59 200.2 0.6 2.6e-58 197.4 0.6 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|344209832|ref|YP_004786009.1| - 3.4e-47 159.1 0.1 6.6e-47 158.2 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|344209832|ref|YP_004786009.1| - 0.0058 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35_N PF12172.8 gi|344209833|ref|YP_004786010.1| - 1e-10 41.2 2.9 6e-10 38.8 3.8 1.9 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|344209833|ref|YP_004786010.1| - 0.005 16.8 1.2 0.023 14.7 1.2 2.2 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated ACP_syn_III_C PF08541.10 gi|344209833|ref|YP_004786010.1| - 0.1 12.8 0.2 0.23 11.6 0.2 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Rubredoxin_2 PF18073.1 gi|344209833|ref|YP_004786010.1| - 0.88 9.3 2.3 1.7 8.4 2.3 1.5 1 0 0 1 1 1 0 Rubredoxin metal binding domain Thiolase_N PF00108.23 gi|344209834|ref|YP_004786011.1| - 8.5e-25 87.6 0.9 2.7e-24 85.9 0.9 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|344209834|ref|YP_004786011.1| - 5.9e-10 38.9 0.4 1.6e-09 37.5 0.1 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|344209834|ref|YP_004786011.1| - 8.4e-09 35.4 2.3 1.8e-08 34.3 2.3 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|344209834|ref|YP_004786011.1| - 0.0059 16.4 1.0 0.071 13.0 0.3 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMP-binding_C_2 PF14535.6 gi|344209835|ref|YP_004786012.1| - 2.9e-20 72.4 0.0 5.7e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|344209835|ref|YP_004786012.1| - 2.7e-14 52.6 0.2 8.3e-14 51.0 0.2 1.9 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.12 gi|344209835|ref|YP_004786012.1| - 0.0019 17.3 0.0 0.024 13.7 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE GH3 PF03321.13 gi|344209835|ref|YP_004786012.1| - 0.0031 16.4 0.0 0.018 13.9 0.0 1.9 2 0 0 2 2 2 1 GH3 auxin-responsive promoter 4HBT PF03061.22 gi|344209836|ref|YP_004786013.1| - 8.7e-14 51.6 0.6 1.5e-13 50.9 0.6 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|344209836|ref|YP_004786013.1| - 1.2e-09 38.4 0.1 1.5e-09 38.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|344209836|ref|YP_004786013.1| - 0.0071 16.6 0.2 0.0085 16.4 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.6 gi|344209836|ref|YP_004786013.1| - 0.035 13.4 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase MaoC_dehydratas PF01575.19 gi|344209836|ref|YP_004786013.1| - 0.078 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 MaoC like domain MaoC_dehydratas PF01575.19 gi|344209837|ref|YP_004786014.1| - 6.3e-18 64.5 0.1 7.8e-18 64.2 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344209837|ref|YP_004786014.1| - 0.00024 21.2 0.5 0.00093 19.3 0.5 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Aldedh PF00171.22 gi|344209838|ref|YP_004786015.1| - 3.9e-171 569.6 2.6 4.4e-171 569.5 2.6 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TF_Zn_Ribbon PF08271.12 gi|344209839|ref|YP_004786016.1| - 0.0043 16.5 0.7 0.0043 16.5 0.7 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|344209839|ref|YP_004786016.1| - 0.016 15.6 3.8 0.017 15.5 3.8 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_9 PF14369.6 gi|344209839|ref|YP_004786016.1| - 0.051 13.8 3.9 0.52 10.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-ISL3 PF14690.6 gi|344209839|ref|YP_004786016.1| - 0.056 14.1 5.6 0.086 13.5 5.5 1.4 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-H2C2_2 PF13465.6 gi|344209839|ref|YP_004786016.1| - 0.091 13.2 5.5 4.3 7.9 2.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.10 gi|344209839|ref|YP_004786016.1| - 0.11 12.7 0.2 0.11 12.7 0.2 2.3 2 1 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344209839|ref|YP_004786016.1| - 0.24 11.4 6.4 0.37 10.8 6.4 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain PSI_integrin PF17205.3 gi|344209839|ref|YP_004786016.1| - 0.29 10.9 6.4 2.5 7.9 1.2 2.1 1 1 1 2 2 2 0 Integrin plexin domain FeS_assembly_P PF01883.19 gi|344209840|ref|YP_004786017.1| - 3.7e-23 81.5 0.2 5.7e-23 80.9 0.2 1.3 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein PaaA_PaaC PF05138.12 gi|344209841|ref|YP_004786018.1| - 6.2e-58 196.0 2.0 8.2e-58 195.6 2.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.6 gi|344209841|ref|YP_004786018.1| - 0.004 16.9 0.6 0.012 15.4 0.6 1.8 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like GSP_synth PF03738.14 gi|344209841|ref|YP_004786018.1| - 0.017 14.3 0.4 0.41 9.7 0.1 2.1 1 1 1 2 2 2 0 Glutathionylspermidine synthase preATP-grasp DUF1799 PF08809.11 gi|344209841|ref|YP_004786018.1| - 0.065 13.4 0.0 0.23 11.6 0.0 1.9 1 0 0 1 1 1 0 Phage related hypothetical protein (DUF1799) PaaB PF06243.11 gi|344209842|ref|YP_004786019.1| - 4.2e-24 84.6 0.2 3e-12 46.6 0.1 2.1 2 0 0 2 2 2 2 Phenylacetic acid degradation B PaaA_PaaC PF05138.12 gi|344209843|ref|YP_004786020.1| - 4.5e-73 245.6 0.1 5.6e-73 245.3 0.1 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.12 gi|344209844|ref|YP_004786021.1| - 2.4e-17 62.5 0.1 4e-17 61.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344209844|ref|YP_004786021.1| - 0.00014 21.8 0.0 0.00023 21.1 0.0 1.4 1 1 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|344209844|ref|YP_004786021.1| - 0.019 14.8 0.1 0.074 13.0 0.1 2.1 2 1 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|344209844|ref|YP_004786021.1| - 0.17 11.5 0.0 0.46 10.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding SpoIIID PF12116.8 gi|344209844|ref|YP_004786021.1| - 0.18 11.9 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 Stage III sporulation protein D ECH_1 PF00378.20 gi|344209845|ref|YP_004786022.1| - 3.2e-50 170.8 0.1 3.8e-50 170.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|344209845|ref|YP_004786022.1| - 1.8e-27 96.7 0.1 2.4e-27 96.3 0.1 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Amidohydro_2 PF04909.14 gi|344209846|ref|YP_004786023.1| - 5e-45 154.5 1.5 6.6e-45 154.1 1.5 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|344209846|ref|YP_004786023.1| - 0.0051 16.2 0.0 0.064 12.6 0.0 2.1 1 1 0 1 1 1 1 TatD related DNase HpcH_HpaI PF03328.14 gi|344209847|ref|YP_004786024.1| - 4e-56 189.6 2.8 5.5e-56 189.2 2.8 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|344209847|ref|YP_004786024.1| - 3e-14 52.9 0.0 5.2e-08 32.4 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Methyltransf_11 PF08241.12 gi|344209848|ref|YP_004786025.1| - 1.3e-16 61.0 0.0 2.5e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344209848|ref|YP_004786025.1| - 2.9e-13 50.3 0.0 6.3e-13 49.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344209848|ref|YP_004786025.1| - 3.6e-08 33.4 0.0 6e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344209848|ref|YP_004786025.1| - 3.5e-07 30.2 0.0 4.2e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344209848|ref|YP_004786025.1| - 1.7e-06 28.7 0.0 3.1e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344209848|ref|YP_004786025.1| - 1.3e-05 24.7 0.0 2.6e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|344209848|ref|YP_004786025.1| - 0.00016 21.6 0.0 0.00022 21.1 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|344209848|ref|YP_004786025.1| - 0.22 11.1 0.2 1.1 8.8 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase small domain MaoC_dehydratas PF01575.19 gi|344209849|ref|YP_004786026.1| - 3.9e-26 91.0 0.2 4.8e-26 90.7 0.2 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344209849|ref|YP_004786026.1| - 0.0022 18.2 0.4 0.0072 16.5 0.4 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Carboxyl_trans PF01039.22 gi|344209850|ref|YP_004786027.1| - 1.9e-129 432.5 0.0 2.4e-129 432.2 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain CPSase_L_D2 PF02786.17 gi|344209851|ref|YP_004786028.1| - 1.4e-75 253.4 0.2 1.4e-75 253.4 0.2 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|344209851|ref|YP_004786028.1| - 9.8e-44 148.4 0.1 1.9e-43 147.5 0.1 1.5 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|344209851|ref|YP_004786028.1| - 6.3e-37 126.0 0.0 1.3e-36 124.9 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|344209851|ref|YP_004786028.1| - 3.1e-16 59.0 3.6 1.1e-15 57.3 3.1 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp PF02222.22 gi|344209851|ref|YP_004786028.1| - 7.4e-10 38.7 0.2 1.5e-09 37.6 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|344209851|ref|YP_004786028.1| - 2.3e-09 37.1 0.0 4.4e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|344209851|ref|YP_004786028.1| - 2.2e-05 24.3 0.1 4.9e-05 23.2 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Biotin_lipoyl_2 PF13533.6 gi|344209851|ref|YP_004786028.1| - 4.5e-05 23.2 1.5 0.0079 16.0 0.1 3.0 2 1 1 3 3 3 1 Biotin-lipoyl like ATP-grasp_3 PF02655.14 gi|344209851|ref|YP_004786028.1| - 0.00054 20.0 0.0 0.00087 19.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|344209851|ref|YP_004786028.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon HlyD_D23 PF16576.5 gi|344209851|ref|YP_004786028.1| - 0.03 13.5 0.7 3.4 6.8 0.1 2.4 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATP-grasp_5 PF13549.6 gi|344209851|ref|YP_004786028.1| - 0.054 12.9 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain HlyD_3 PF13437.6 gi|344209851|ref|YP_004786028.1| - 0.083 13.6 0.6 8.1 7.2 0.2 3.1 2 0 0 2 2 2 0 HlyD family secretion protein RnfC_N PF13375.6 gi|344209851|ref|YP_004786028.1| - 0.22 11.5 1.0 0.89 9.6 0.4 2.4 3 0 0 3 3 3 0 RnfC Barrel sandwich hybrid domain Acyl-CoA_dh_1 PF00441.24 gi|344209852|ref|YP_004786029.1| - 3.5e-29 101.9 0.6 5.4e-29 101.3 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344209852|ref|YP_004786029.1| - 1.6e-23 82.7 0.0 3.7e-23 81.5 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|344209852|ref|YP_004786029.1| - 4.5e-23 82.1 2.1 8.4e-23 81.2 2.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|344209852|ref|YP_004786029.1| - 2e-16 60.5 0.5 3.5e-16 59.7 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|344209853|ref|YP_004786030.1| - 1e-85 287.9 0.0 1.3e-85 287.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344209853|ref|YP_004786030.1| - 3.7e-20 72.7 1.2 3.7e-20 72.7 1.2 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain UbiD PF01977.16 gi|344209854|ref|YP_004786031.1| - 7.8e-27 94.2 0.0 1.1e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.16 gi|344209855|ref|YP_004786032.1| - 2.9e-102 342.6 0.0 4e-102 342.1 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Peptidase_M41 PF01434.18 gi|344209856|ref|YP_004786033.1| - 0.12 12.2 0.8 0.19 11.5 0.1 1.6 2 0 0 2 2 2 0 Peptidase family M41 ABC1 PF03109.16 gi|344209857|ref|YP_004786034.1| - 4.6e-20 72.0 0.0 9e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|344209857|ref|YP_004786034.1| - 0.079 12.9 7.7 0.047 13.6 1.9 3.1 2 1 2 4 4 4 0 Phosphotransferase enzyme family Pkinase PF00069.25 gi|344209857|ref|YP_004786034.1| - 0.15 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Ion_trans_N PF08412.10 gi|344209857|ref|YP_004786034.1| - 0.2 11.3 0.0 0.6 9.8 0.1 1.7 2 0 0 2 2 2 0 Ion transport protein N-terminal DUF4010 PF13194.6 gi|344209858|ref|YP_004786035.1| - 1e-69 234.4 15.8 1e-69 234.4 15.8 3.1 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|344209858|ref|YP_004786035.1| - 2.1e-10 41.0 12.1 2.1e-10 41.0 12.1 3.5 3 2 0 3 3 3 1 MgtC family PhoLip_ATPase_C PF16212.5 gi|344209858|ref|YP_004786035.1| - 1.7 8.3 6.7 0.69 9.6 0.2 2.3 1 1 1 2 2 2 0 Phospholipid-translocating P-type ATPase C-terminal E1-E2_ATPase PF00122.20 gi|344209859|ref|YP_004786036.1| - 5.1e-57 192.3 1.5 1.1e-56 191.2 1.5 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|344209859|ref|YP_004786036.1| - 3e-39 135.5 13.5 6.1e-39 134.5 11.2 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|344209859|ref|YP_004786036.1| - 1.5e-15 57.3 1.0 2.2e-14 53.6 0.1 3.0 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|344209859|ref|YP_004786036.1| - 0.0014 18.4 1.0 0.02 14.7 0.7 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344209859|ref|YP_004786036.1| - 0.0034 17.8 0.4 0.018 15.5 0.4 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.12 gi|344209860|ref|YP_004786037.1| - 2.4e-16 59.2 0.3 8.4e-16 57.5 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.6 gi|344209860|ref|YP_004786037.1| - 3.5e-05 23.5 0.2 0.00025 20.8 0.1 2.4 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|344209860|ref|YP_004786037.1| - 7.8e-05 22.5 0.2 0.00032 20.5 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|344209860|ref|YP_004786037.1| - 0.0026 17.8 0.5 0.016 15.3 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|344209860|ref|YP_004786037.1| - 0.0048 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 gi|344209860|ref|YP_004786037.1| - 0.0067 16.0 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|344209860|ref|YP_004786037.1| - 0.023 14.4 0.1 0.085 12.6 0.1 2.0 1 1 0 1 1 1 0 helix-turn-helix, Psq domain HTH_IclR PF09339.10 gi|344209860|ref|YP_004786037.1| - 0.052 13.3 0.2 0.26 11.1 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344209860|ref|YP_004786037.1| - 0.06 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|344209860|ref|YP_004786037.1| - 0.087 13.0 0.1 0.23 11.6 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|344209860|ref|YP_004786037.1| - 0.16 11.9 0.0 0.82 9.6 0.0 2.2 2 0 0 2 2 2 0 MarR family Cdc6_C PF09079.11 gi|344209861|ref|YP_004786038.1| - 4.8e-17 61.7 0.0 1.2e-16 60.4 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|344209861|ref|YP_004786038.1| - 2.3e-12 47.6 3.2 1.7e-11 44.8 0.4 2.7 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344209861|ref|YP_004786038.1| - 7.7e-12 45.7 0.0 1e-10 42.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|344209861|ref|YP_004786038.1| - 0.00015 22.2 0.0 0.00035 21.0 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|344209861|ref|YP_004786038.1| - 0.00088 18.5 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_32 PF13654.6 gi|344209861|ref|YP_004786038.1| - 0.002 17.0 0.0 1.5 7.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|344209861|ref|YP_004786038.1| - 0.0021 18.0 0.0 0.0049 16.8 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|344209861|ref|YP_004786038.1| - 0.0042 17.6 0.1 0.021 15.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|344209861|ref|YP_004786038.1| - 0.0057 16.7 0.3 0.21 11.6 0.0 3.0 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|344209861|ref|YP_004786038.1| - 0.0074 16.2 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 gi|344209861|ref|YP_004786038.1| - 0.0074 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|344209861|ref|YP_004786038.1| - 0.0086 15.5 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial TniB protein Sigma54_activat PF00158.26 gi|344209861|ref|YP_004786038.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|344209861|ref|YP_004786038.1| - 0.018 15.4 0.0 0.034 14.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CbiA PF01656.23 gi|344209861|ref|YP_004786038.1| - 0.022 14.8 0.0 0.068 13.2 0.1 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.15 gi|344209861|ref|YP_004786038.1| - 0.026 14.4 0.0 0.06 13.3 0.0 1.6 1 1 0 1 1 1 0 NTPase TsaE PF02367.17 gi|344209861|ref|YP_004786038.1| - 0.053 13.5 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|344209861|ref|YP_004786038.1| - 0.068 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF1759 PF03564.15 gi|344209861|ref|YP_004786038.1| - 0.087 12.8 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) NB-ARC PF00931.22 gi|344209861|ref|YP_004786038.1| - 0.12 11.6 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|344209861|ref|YP_004786038.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 2 0 0 2 2 1 0 RsgA GTPase KAP_NTPase PF07693.14 gi|344209861|ref|YP_004786038.1| - 0.13 11.4 0.2 5.6 6.1 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain OB_aCoA_assoc PF01796.17 gi|344209862|ref|YP_004786039.1| - 1.1e-17 63.8 1.6 1.6e-17 63.2 1.6 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|344209862|ref|YP_004786039.1| - 1e-13 50.8 2.1 2.3e-13 49.7 2.1 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|344209863|ref|YP_004786040.1| - 4.1e-23 82.1 2.4 1.5e-22 80.3 0.9 2.4 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|344209863|ref|YP_004786040.1| - 2e-07 30.7 0.4 5.5e-07 29.3 0.4 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|344209863|ref|YP_004786040.1| - 9.7e-05 22.1 0.5 9.7e-05 22.1 0.5 2.2 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Peptidase_M20 PF01546.28 gi|344209863|ref|YP_004786040.1| - 0.059 13.1 0.7 0.15 11.7 0.1 1.9 2 1 0 2 2 2 0 Peptidase family M20/M25/M40 DUF3160 PF11369.8 gi|344209863|ref|YP_004786040.1| - 0.06 11.8 0.1 0.12 10.8 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3160) ACP_syn_III PF08545.10 gi|344209863|ref|YP_004786040.1| - 0.22 11.4 7.1 1.9 8.4 0.2 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Oxidored_FMN PF00724.20 gi|344209864|ref|YP_004786041.1| - 1.9e-63 214.8 0.0 2.2e-63 214.6 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.21 gi|344209864|ref|YP_004786041.1| - 0.0026 17.2 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|344209864|ref|YP_004786041.1| - 0.08 12.1 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase SBP_bac_8 PF13416.6 gi|344209865|ref|YP_004786042.1| - 1e-38 133.8 0.9 1.3e-38 133.5 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344209865|ref|YP_004786042.1| - 2.9e-27 96.4 0.4 3.8e-27 96.1 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344209865|ref|YP_004786042.1| - 0.00017 21.2 0.9 0.00041 20.1 0.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_6 PF13343.6 gi|344209865|ref|YP_004786042.1| - 0.0089 15.5 0.0 0.28 10.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|344209865|ref|YP_004786042.1| - 0.027 14.2 0.1 0.39 10.4 0.0 2.5 2 1 1 3 3 3 0 Bacterial extracellular solute-binding protein BamHI PF02923.15 gi|344209865|ref|YP_004786042.1| - 0.16 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease BamHI Adhes-Ig_like PF09085.10 gi|344209865|ref|YP_004786042.1| - 0.16 12.1 0.1 0.55 10.4 0.0 1.8 2 0 0 2 2 2 0 Adhesion molecule, immunoglobulin-like BPD_transp_1 PF00528.22 gi|344209866|ref|YP_004786043.1| - 3.9e-13 49.5 17.0 3.9e-13 49.5 17.0 2.3 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component CCB1 PF12046.8 gi|344209866|ref|YP_004786043.1| - 0.42 9.9 2.5 0.98 8.7 2.5 1.6 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Baculo_11_kDa PF06143.11 gi|344209866|ref|YP_004786043.1| - 3.3 7.3 5.3 1 9.0 0.1 2.4 2 0 0 2 2 2 0 Baculovirus 11 kDa family BPD_transp_1 PF00528.22 gi|344209867|ref|YP_004786044.1| - 1.2e-11 44.7 18.6 1.2e-11 44.7 18.6 2.1 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF347 PF03988.12 gi|344209867|ref|YP_004786044.1| - 0.034 14.3 3.8 0.29 11.4 0.1 3.4 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) DDE_Tnp_IS66_C PF13817.6 gi|344209867|ref|YP_004786044.1| - 0.079 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 IS66 C-terminal element Adeno_E3_CR2 PF02439.15 gi|344209867|ref|YP_004786044.1| - 1.7 8.5 5.3 11 5.9 0.9 2.7 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 ABC_tran PF00005.27 gi|344209868|ref|YP_004786045.1| - 1.5e-31 109.8 0.0 2.2e-31 109.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|344209868|ref|YP_004786045.1| - 1.7e-12 47.3 0.3 1.2e-11 44.7 0.1 2.3 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|344209868|ref|YP_004786045.1| - 9.6e-10 39.2 0.3 8.7e-09 36.1 0.1 2.8 3 0 0 3 3 3 1 MalK OB fold domain AAA_21 PF13304.6 gi|344209868|ref|YP_004786045.1| - 2.4e-06 27.6 0.0 0.048 13.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|344209868|ref|YP_004786045.1| - 4.4e-06 26.9 0.1 3.5e-05 24.0 0.0 2.4 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|344209868|ref|YP_004786045.1| - 0.00021 21.8 1.2 0.018 15.6 0.0 3.7 3 0 0 3 3 3 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|344209868|ref|YP_004786045.1| - 0.0022 17.4 0.0 0.0088 15.5 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344209868|ref|YP_004786045.1| - 0.0078 16.6 0.1 0.017 15.5 0.1 1.6 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344209868|ref|YP_004786045.1| - 0.0092 16.3 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|344209868|ref|YP_004786045.1| - 0.028 14.4 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Ribosomal_S17 PF00366.20 gi|344209868|ref|YP_004786045.1| - 0.06 13.5 0.0 2.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S17 AAA_30 PF13604.6 gi|344209868|ref|YP_004786045.1| - 0.061 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344209868|ref|YP_004786045.1| - 0.063 12.8 0.1 0.32 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|344209868|ref|YP_004786045.1| - 0.085 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|344209868|ref|YP_004786045.1| - 0.097 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|344209868|ref|YP_004786045.1| - 0.19 11.5 0.0 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4131 PF13567.6 gi|344209868|ref|YP_004786045.1| - 0.2 11.3 0.0 2.7 7.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) GDPD PF03009.17 gi|344209869|ref|YP_004786046.1| - 6.4e-22 78.5 0.1 2.8e-21 76.4 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family PEP_hydrolase PF09370.10 gi|344209869|ref|YP_004786046.1| - 0.0074 15.5 0.0 0.016 14.5 0.0 1.5 2 0 0 2 2 2 1 Phosphoenolpyruvate hydrolase-like GDPD_2 PF13653.6 gi|344209869|ref|YP_004786046.1| - 0.01 16.3 0.0 0.11 12.9 0.0 2.5 3 0 0 3 3 3 0 Glycerophosphoryl diester phosphodiesterase family Hydrolase_6 PF13344.6 gi|344209870|ref|YP_004786047.1| - 2e-25 88.8 0.0 3.4e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344209870|ref|YP_004786047.1| - 4e-23 81.3 0.1 4.6e-22 77.9 0.0 2.4 3 0 0 3 3 3 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|344209870|ref|YP_004786047.1| - 1.2e-14 55.1 0.1 1.6e-14 54.7 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344209870|ref|YP_004786047.1| - 1.3e-08 35.1 0.1 9.8e-07 29.0 0.0 2.7 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|344209870|ref|YP_004786047.1| - 0.0014 18.3 0.0 0.0033 17.0 0.0 1.6 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|344209870|ref|YP_004786047.1| - 0.026 14.3 0.2 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Peptidase_M4_C PF02868.15 gi|344209870|ref|YP_004786047.1| - 0.037 13.9 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 Thermolysin metallopeptidase, alpha-helical domain DUF4010 PF13194.6 gi|344209871|ref|YP_004786048.1| - 2.4e-51 174.4 20.8 2.4e-51 174.4 20.8 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|344209871|ref|YP_004786048.1| - 1.4e-21 77.1 10.5 1.4e-21 77.1 10.5 3.5 2 1 1 3 3 3 1 MgtC family Phosphonate-bd PF12974.7 gi|344209872|ref|YP_004786049.1| - 3e-60 203.8 0.0 4e-60 203.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|344209872|ref|YP_004786049.1| - 0.004 16.9 0.2 0.0077 16.0 0.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_3 PF00497.20 gi|344209872|ref|YP_004786049.1| - 0.012 15.0 0.0 0.065 12.7 0.0 1.9 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|344209872|ref|YP_004786049.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 NMT1/THI5 like ABC_tran PF00005.27 gi|344209873|ref|YP_004786050.1| - 6.6e-37 127.1 0.0 8.9e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209873|ref|YP_004786050.1| - 2.5e-06 27.5 0.3 0.043 13.6 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|344209873|ref|YP_004786050.1| - 1.1e-05 25.8 0.1 0.00023 21.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|344209873|ref|YP_004786050.1| - 4.8e-05 23.0 0.1 9.3e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344209873|ref|YP_004786050.1| - 7.9e-05 23.1 0.2 0.00014 22.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344209873|ref|YP_004786050.1| - 0.00011 22.2 0.2 0.00049 20.1 0.1 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|344209873|ref|YP_004786050.1| - 0.00051 19.8 0.0 0.00092 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344209873|ref|YP_004786050.1| - 0.00061 19.3 0.2 0.3 10.5 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|344209873|ref|YP_004786050.1| - 0.00077 19.6 0.0 0.0013 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|344209873|ref|YP_004786050.1| - 0.0017 18.9 0.0 0.0026 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|344209873|ref|YP_004786050.1| - 0.013 15.5 0.0 0.094 12.6 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|344209873|ref|YP_004786050.1| - 0.013 15.5 0.1 0.18 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|344209873|ref|YP_004786050.1| - 0.014 15.9 0.0 0.029 14.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|344209873|ref|YP_004786050.1| - 0.017 14.6 0.1 4 6.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein MMR_HSR1 PF01926.23 gi|344209873|ref|YP_004786050.1| - 0.017 15.2 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|344209873|ref|YP_004786050.1| - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF87 PF01935.17 gi|344209873|ref|YP_004786050.1| - 0.028 14.5 0.5 0.24 11.5 0.1 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|344209873|ref|YP_004786050.1| - 0.034 13.9 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|344209873|ref|YP_004786050.1| - 0.035 13.5 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CbiA PF01656.23 gi|344209873|ref|YP_004786050.1| - 0.06 13.4 0.0 0.092 12.8 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|344209873|ref|YP_004786050.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ATP_bind_1 PF03029.17 gi|344209873|ref|YP_004786050.1| - 0.07 12.9 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|344209873|ref|YP_004786050.1| - 0.073 13.3 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|344209873|ref|YP_004786050.1| - 0.078 12.7 0.0 0.32 10.7 0.1 1.8 2 0 0 2 2 2 0 Cytidylate kinase NACHT PF05729.12 gi|344209873|ref|YP_004786050.1| - 0.087 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|344209873|ref|YP_004786050.1| - 0.088 12.4 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_27 PF13514.6 gi|344209873|ref|YP_004786050.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344209873|ref|YP_004786050.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|344209873|ref|YP_004786050.1| - 0.15 12.3 0.2 1.8 8.8 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TsaE PF02367.17 gi|344209873|ref|YP_004786050.1| - 0.17 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|344209873|ref|YP_004786050.1| - 0.17 12.2 0.0 0.23 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|344209873|ref|YP_004786050.1| - 0.17 10.7 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain G-alpha PF00503.20 gi|344209873|ref|YP_004786050.1| - 0.27 10.4 0.0 0.27 10.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.22 gi|344209874|ref|YP_004786051.1| - 2.4e-14 53.5 14.8 1.1e-13 51.4 14.8 2.0 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344209875|ref|YP_004786052.1| - 2.2e-16 60.1 17.3 2.2e-16 60.1 17.3 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Helicase_C PF00271.31 gi|344209877|ref|YP_004786054.1| - 2.6e-23 82.5 0.0 6.1e-23 81.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|344209877|ref|YP_004786054.1| - 5.4e-18 64.8 0.0 4.5e-16 58.5 0.0 2.5 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|344209877|ref|YP_004786054.1| - 1.1e-11 45.0 0.0 3.3e-11 43.5 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|344209877|ref|YP_004786054.1| - 2.3e-06 27.5 0.0 7e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 DEAD/DEAH box helicase RapA_C PF12137.8 gi|344209877|ref|YP_004786054.1| - 0.00044 19.4 0.0 0.00044 19.4 0.0 2.7 2 0 0 2 2 2 1 RNA polymerase recycling family C-terminal Helicase_C_4 PF13871.6 gi|344209877|ref|YP_004786054.1| - 0.00098 18.9 0.0 0.06 13.0 0.0 2.4 2 0 0 2 2 2 1 C-terminal domain on Strawberry notch homologue AAA_34 PF13872.6 gi|344209877|ref|YP_004786054.1| - 0.0076 15.2 0.6 0.038 12.9 0.6 2.0 1 1 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.9 gi|344209877|ref|YP_004786054.1| - 0.26 10.5 0.0 0.26 10.5 0.0 2.8 4 0 0 4 4 4 0 Uncharacterized conserved protein (DUF2075) Fib_alpha PF08702.10 gi|344209877|ref|YP_004786054.1| - 3.2 7.9 7.5 2 8.6 3.8 2.6 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family N6_Mtase PF02384.16 gi|344209878|ref|YP_004786055.1| - 5e-07 29.3 0.0 0.00041 19.7 0.0 3.0 3 0 0 3 3 3 2 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|344209878|ref|YP_004786055.1| - 0.007 16.2 0.0 0.025 14.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain UPF0020 PF01170.18 gi|344209878|ref|YP_004786055.1| - 0.061 13.0 0.0 1.5 8.4 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 ComR_TPR PF18710.1 gi|344209878|ref|YP_004786055.1| - 0.1 12.1 0.1 0.67 9.5 0.3 2.0 2 0 0 2 2 2 0 ComR tetratricopeptide PglZ PF08665.12 gi|344209879|ref|YP_004786056.1| - 1.3e-08 35.2 0.0 2.6e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 PglZ domain UDPG_MGDP_dh_C PF03720.15 gi|344209880|ref|YP_004786057.1| - 0.019 15.3 0.0 0.043 14.2 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N6_Mtase PF02384.16 gi|344209881|ref|YP_004786058.1| - 7.1e-09 35.4 0.0 9.7e-05 21.8 0.0 3.0 3 0 0 3 3 3 2 N-6 DNA Methylase UPF0020 PF01170.18 gi|344209881|ref|YP_004786058.1| - 0.0023 17.6 0.0 3.1 7.5 0.0 3.6 4 0 0 4 4 4 2 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.6 gi|344209881|ref|YP_004786058.1| - 0.0046 16.8 0.0 0.027 14.3 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Chloroa_b-bind PF00504.21 gi|344209882|ref|YP_004786059.1| - 0.038 14.5 1.0 0.041 14.4 1.0 1.0 1 0 0 1 1 1 0 Chlorophyll A-B binding protein NucS PF01939.16 gi|344209883|ref|YP_004786060.1| - 3.6e-05 23.2 0.0 6.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Endonuclease NucS DUF1415 PF07209.12 gi|344209884|ref|YP_004786061.1| - 0.08 12.7 0.0 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1415) AAA_22 PF13401.6 gi|344209884|ref|YP_004786061.1| - 0.13 12.6 0.0 6.5 7.0 0.0 3.5 3 0 0 3 3 3 0 AAA domain DUF1788 PF08747.11 gi|344209885|ref|YP_004786062.1| - 2.6e-13 50.1 0.0 3.3e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) EIIA-man PF03610.16 gi|344209885|ref|YP_004786062.1| - 0.019 15.2 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 PTS system fructose IIA component ABC_tran PF00005.27 gi|344209886|ref|YP_004786063.1| - 0.07 13.6 0.0 0.24 11.9 0.0 1.9 1 0 0 1 1 1 0 ABC transporter DUF1819 PF08849.11 gi|344209887|ref|YP_004786064.1| - 0.00012 21.9 0.0 0.00029 20.7 0.0 1.6 1 1 0 1 1 1 1 Putative inner membrane protein (DUF1819) ParA PF10609.9 gi|344209888|ref|YP_004786065.1| - 3.5e-64 216.6 0.0 4.9e-64 216.1 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|344209888|ref|YP_004786065.1| - 5.4e-13 49.1 0.0 7.7e-13 48.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|344209888|ref|YP_004786065.1| - 4.1e-10 39.7 3.6 4.1e-10 39.7 3.6 2.9 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|344209888|ref|YP_004786065.1| - 5.9e-10 39.3 0.0 6e-09 36.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain DUF2249 PF10006.9 gi|344209888|ref|YP_004786065.1| - 7.2e-09 35.4 0.0 1.6e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) VirC1 PF07015.11 gi|344209888|ref|YP_004786065.1| - 2.8e-06 26.8 0.0 4.9e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.11 gi|344209888|ref|YP_004786065.1| - 0.00018 20.9 0.5 0.0005 19.4 0.4 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|344209888|ref|YP_004786065.1| - 0.003 17.4 0.0 0.21 11.4 0.2 2.5 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|344209888|ref|YP_004786065.1| - 0.0053 16.0 1.6 0.0089 15.2 0.5 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|344209888|ref|YP_004786065.1| - 0.0058 16.1 0.3 0.026 14.0 0.3 1.8 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ Glyco_trans_4_4 PF13579.6 gi|344209888|ref|YP_004786065.1| - 0.0063 17.0 0.3 0.0063 17.0 0.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain AAA_25 PF13481.6 gi|344209888|ref|YP_004786065.1| - 0.017 14.7 1.5 0.051 13.1 1.0 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|344209888|ref|YP_004786065.1| - 0.029 14.0 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Asparaginase_C PF17763.1 gi|344209888|ref|YP_004786065.1| - 0.08 13.2 0.4 0.25 11.6 0.2 2.0 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain MbeB_N PF04837.12 gi|344209888|ref|YP_004786065.1| - 0.14 12.5 0.0 0.44 10.9 0.0 1.8 2 0 0 2 2 2 0 MbeB-like, N-term conserved region CLP1_P PF16575.5 gi|344209888|ref|YP_004786065.1| - 0.25 11.1 0.0 0.51 10.1 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HEAT_2 PF13646.6 gi|344209890|ref|YP_004786067.1| - 7.7e-26 90.3 25.8 2.5e-14 53.4 2.3 3.1 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|344209890|ref|YP_004786067.1| - 8.2e-13 47.4 12.0 0.0018 18.4 0.0 5.8 6 0 0 6 6 6 4 HEAT repeat HEAT_EZ PF13513.6 gi|344209890|ref|YP_004786067.1| - 0.00019 21.8 10.6 0.034 14.7 0.2 4.6 2 1 3 5 5 5 3 HEAT-like repeat Cnd1 PF12717.7 gi|344209890|ref|YP_004786067.1| - 0.0045 17.1 0.0 7.7 6.5 0.0 3.3 2 1 1 3 3 3 2 non-SMC mitotic condensation complex subunit 1 DUF4042 PF13251.6 gi|344209890|ref|YP_004786067.1| - 0.054 13.2 0.0 2.3 7.9 0.0 3.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4042) DUF2019 PF09450.10 gi|344209890|ref|YP_004786067.1| - 1 9.4 4.4 10 6.1 1.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF2019) EB_dh PF09459.10 gi|344209891|ref|YP_004786068.1| - 2.4e-28 99.8 8.9 4.1e-28 99.0 8.9 1.4 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.15 gi|344209892|ref|YP_004786069.1| - 6.8e-20 71.5 0.0 1.1e-19 70.8 0.0 1.4 1 0 0 1 1 1 1 Nitrate reductase delta subunit DUF442 PF04273.13 gi|344209892|ref|YP_004786069.1| - 0.061 13.4 1.2 0.57 10.3 0.1 2.5 3 0 0 3 3 3 0 Putative phosphatase (DUF442) Luteo_P1-P2 PF08467.10 gi|344209892|ref|YP_004786069.1| - 0.19 10.9 0.1 0.33 10.2 0.1 1.3 1 0 0 1 1 1 0 Luteovirus RNA polymerase P1-P2/replicase Fer4_11 PF13247.6 gi|344209893|ref|YP_004786070.1| - 1.4e-32 111.8 5.5 1.4e-32 111.8 5.5 1.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344209893|ref|YP_004786070.1| - 1.1e-13 51.6 0.7 4.9e-06 27.0 6.9 3.1 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344209893|ref|YP_004786070.1| - 6.5e-08 32.6 17.9 0.00066 19.7 9.0 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344209893|ref|YP_004786070.1| - 3.6e-07 29.9 23.7 0.00037 20.4 2.2 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|344209893|ref|YP_004786070.1| - 3.4e-06 27.1 15.5 0.00064 19.8 6.5 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344209893|ref|YP_004786070.1| - 3.9e-06 26.9 13.6 0.0029 17.7 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|344209893|ref|YP_004786070.1| - 2.4e-05 24.2 23.0 0.012 15.7 1.4 3.8 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|344209893|ref|YP_004786070.1| - 0.0035 17.1 1.7 0.0035 17.1 1.7 4.2 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|344209893|ref|YP_004786070.1| - 0.0084 16.6 19.4 0.11 13.1 0.6 3.5 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344209893|ref|YP_004786070.1| - 0.041 14.8 20.0 1.8 9.5 3.1 3.8 2 1 0 3 3 3 0 4Fe-4S double cluster binding domain ETF_QO PF05187.13 gi|344209893|ref|YP_004786070.1| - 0.055 13.6 0.6 0.055 13.6 0.6 1.9 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|344209893|ref|YP_004786070.1| - 0.1 13.6 31.2 0.55 11.3 5.9 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344209893|ref|YP_004786070.1| - 0.26 11.9 26.7 0.74 10.5 2.0 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|344209893|ref|YP_004786070.1| - 0.27 12.0 8.5 0.73 10.6 0.1 3.5 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|344209893|ref|YP_004786070.1| - 0.35 11.5 12.0 0.64 10.6 0.4 3.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|344209893|ref|YP_004786070.1| - 1 9.9 18.6 7.2 7.1 3.1 3.5 2 1 2 4 4 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|344209894|ref|YP_004786071.1| - 4.7e-60 203.7 0.0 8.7e-60 202.9 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344209894|ref|YP_004786071.1| - 3.7e-12 46.3 0.6 2.5e-11 43.6 0.0 2.5 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|344209894|ref|YP_004786071.1| - 0.0009 19.2 0.4 0.0034 17.3 0.4 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|344209894|ref|YP_004786071.1| - 0.0077 16.0 3.2 0.0077 16.0 3.2 1.6 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence CDC48_N PF02359.18 gi|344209894|ref|YP_004786071.1| - 0.04 14.1 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain UCR_Fe-S_N PF10399.9 gi|344209894|ref|YP_004786071.1| - 0.11 11.9 0.6 0.2 11.0 0.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Usp PF00582.26 gi|344209895|ref|YP_004786072.1| - 2.7e-08 34.4 0.2 3.8e-08 33.9 0.2 1.3 1 0 0 1 1 1 1 Universal stress protein family Secretin_N PF03958.17 gi|344209895|ref|YP_004786072.1| - 0.021 15.2 0.2 0.038 14.4 0.2 1.4 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain FAD_binding_3 PF01494.19 gi|344209896|ref|YP_004786073.1| - 2.4e-11 43.5 6.2 3.3e-09 36.5 6.2 2.9 1 1 0 1 1 1 1 FAD binding domain Tubulin PF00091.25 gi|344209897|ref|YP_004786074.1| - 2.1e-27 96.6 0.0 3.1e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|344209897|ref|YP_004786074.1| - 5.8e-07 29.0 1.9 0.00058 19.1 0.3 2.6 1 1 2 3 3 3 2 Tubulin like FmdA_AmdA PF03069.15 gi|344209898|ref|YP_004786075.1| - 5.3e-31 107.8 4.6 5.3e-16 58.5 1.1 2.8 1 1 1 2 2 2 2 Acetamidase/Formamidase family TRAM PF01938.20 gi|344209898|ref|YP_004786075.1| - 0.15 12.1 1.2 0.5 10.4 0.3 2.2 2 0 0 2 2 2 0 TRAM domain 5_nucleotid_C PF02872.18 gi|344209900|ref|YP_004786077.1| - 6.2e-27 94.7 0.0 1.6e-26 93.4 0.0 1.6 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain Metallophos_2 PF12850.7 gi|344209900|ref|YP_004786077.1| - 0.00053 20.2 1.1 0.0021 18.3 1.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344209900|ref|YP_004786077.1| - 0.0029 18.1 0.3 0.0062 17.0 0.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|344209900|ref|YP_004786077.1| - 0.14 11.4 0.1 0.36 10.1 0.1 1.6 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily ABC_tran PF00005.27 gi|344209902|ref|YP_004786079.1| - 2.3e-57 193.4 0.0 1.9e-28 99.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|344209902|ref|YP_004786079.1| - 3.8e-19 69.6 4.9 0.00028 20.8 0.0 4.1 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209902|ref|YP_004786079.1| - 2.2e-15 56.7 0.2 6.8e-08 32.2 0.1 3.9 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344209902|ref|YP_004786079.1| - 7e-08 32.1 0.3 0.013 15.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|344209902|ref|YP_004786079.1| - 6.8e-07 29.7 2.9 0.0022 18.2 0.0 3.2 2 2 1 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|344209902|ref|YP_004786079.1| - 1.8e-06 28.6 0.0 0.065 13.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|344209902|ref|YP_004786079.1| - 3.8e-06 26.8 0.1 0.35 10.5 0.0 3.1 3 0 0 3 3 3 2 AAA ATPase domain AAA_13 PF13166.6 gi|344209902|ref|YP_004786079.1| - 1.2e-05 24.2 0.0 0.17 10.5 0.0 3.0 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|344209902|ref|YP_004786079.1| - 1.4e-05 25.5 0.9 0.16 12.3 0.6 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|344209902|ref|YP_004786079.1| - 5.9e-05 23.4 3.6 0.19 12.0 0.3 3.9 2 2 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|344209902|ref|YP_004786079.1| - 8.4e-05 22.4 0.7 0.42 10.3 0.2 2.9 2 2 0 2 2 2 2 AAA domain PduV-EutP PF10662.9 gi|344209902|ref|YP_004786079.1| - 0.00013 21.8 0.1 0.61 9.8 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|344209902|ref|YP_004786079.1| - 0.0003 20.8 0.5 0.019 14.9 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_24 PF13479.6 gi|344209902|ref|YP_004786079.1| - 0.00033 20.4 0.0 0.31 10.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|344209902|ref|YP_004786079.1| - 0.0004 20.3 0.5 1.1 9.1 0.0 2.5 2 0 0 2 2 2 2 NACHT domain DUF3584 PF12128.8 gi|344209902|ref|YP_004786079.1| - 0.0004 18.1 0.2 0.14 9.7 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) ATPase PF06745.13 gi|344209902|ref|YP_004786079.1| - 0.00053 19.4 0.1 0.33 10.3 0.0 2.4 2 0 0 2 2 2 2 KaiC RNA_helicase PF00910.22 gi|344209902|ref|YP_004786079.1| - 0.00062 20.1 0.0 0.49 10.8 0.0 3.0 3 0 0 3 3 2 1 RNA helicase ATP_bind_1 PF03029.17 gi|344209902|ref|YP_004786079.1| - 0.0011 18.9 0.8 0.13 12.0 0.1 3.0 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|344209902|ref|YP_004786079.1| - 0.0012 18.2 0.0 0.052 12.8 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin MMR_HSR1 PF01926.23 gi|344209902|ref|YP_004786079.1| - 0.0012 18.9 0.2 0.25 11.4 0.0 3.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|344209902|ref|YP_004786079.1| - 0.0012 18.2 0.0 0.31 10.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Roc PF08477.13 gi|344209902|ref|YP_004786079.1| - 0.0012 19.0 0.2 0.65 10.2 0.0 2.4 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|344209902|ref|YP_004786079.1| - 0.0014 17.9 0.2 0.69 9.0 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain T2SSE PF00437.20 gi|344209902|ref|YP_004786079.1| - 0.0029 16.7 0.7 1.9 7.4 0.0 3.5 4 0 0 4 4 4 1 Type II/IV secretion system protein AAA PF00004.29 gi|344209902|ref|YP_004786079.1| - 0.0034 17.8 0.0 1.4 9.3 0.0 3.4 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|344209902|ref|YP_004786079.1| - 0.0044 17.2 0.1 1.1 9.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|344209902|ref|YP_004786079.1| - 0.0051 16.8 0.1 5.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|344209902|ref|YP_004786079.1| - 0.0072 16.5 0.1 3.8 7.8 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|344209902|ref|YP_004786079.1| - 0.0072 15.2 0.1 0.81 8.4 0.1 2.1 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|344209902|ref|YP_004786079.1| - 0.0093 15.9 2.4 0.6 10.0 0.0 3.1 4 0 0 4 4 3 1 NTPase AAA_18 PF13238.6 gi|344209902|ref|YP_004786079.1| - 0.015 15.9 0.0 3.2 8.3 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|344209902|ref|YP_004786079.1| - 0.025 14.6 0.0 5.7 7.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|344209902|ref|YP_004786079.1| - 0.033 13.8 0.0 2.6 7.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|344209902|ref|YP_004786079.1| - 0.034 13.7 0.2 4.3 6.8 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_17 PF13207.6 gi|344209902|ref|YP_004786079.1| - 0.042 14.3 0.2 2.2 8.7 0.1 2.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|344209902|ref|YP_004786079.1| - 0.043 13.4 0.2 11 5.6 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 gi|344209902|ref|YP_004786079.1| - 0.046 13.6 0.0 12 5.7 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea G-alpha PF00503.20 gi|344209902|ref|YP_004786079.1| - 0.047 12.8 0.0 5 6.2 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit MukB PF04310.12 gi|344209902|ref|YP_004786079.1| - 0.064 13.0 0.4 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 MukB N-terminal Ras PF00071.22 gi|344209902|ref|YP_004786079.1| - 0.08 12.5 0.4 4 7.0 0.0 3.0 3 0 0 3 3 3 0 Ras family cobW PF02492.19 gi|344209902|ref|YP_004786079.1| - 0.088 12.4 1.0 3.9 7.0 0.2 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|344209902|ref|YP_004786079.1| - 0.09 13.1 0.2 1.2 9.5 0.1 2.5 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|344209902|ref|YP_004786079.1| - 0.092 12.5 0.0 31 4.3 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|344209902|ref|YP_004786079.1| - 0.097 12.7 0.1 5.6 7.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Ploopntkinase3 PF18751.1 gi|344209902|ref|YP_004786079.1| - 0.11 12.4 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 AAA_25 PF13481.6 gi|344209902|ref|YP_004786079.1| - 0.11 12.0 6.0 4 7.0 0.4 3.7 3 1 0 3 3 3 0 AAA domain PFK PF00365.20 gi|344209902|ref|YP_004786079.1| - 0.13 11.5 0.0 0.25 10.6 0.0 1.4 1 0 0 1 1 1 0 Phosphofructokinase Pox_A32 PF04665.12 gi|344209902|ref|YP_004786079.1| - 0.16 11.4 0.1 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Poxvirus A32 protein CbiQ PF02361.16 gi|344209903|ref|YP_004786080.1| - 1.9e-15 57.1 14.5 8e-15 55.1 14.5 1.8 1 1 0 1 1 1 1 Cobalt transport protein 2-ph_phosp PF04029.14 gi|344209904|ref|YP_004786081.1| - 5.3e-22 78.1 0.0 7.3e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase PHP PF02811.19 gi|344209905|ref|YP_004786082.1| - 1.8e-06 28.4 0.1 2.2e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|344209905|ref|YP_004786082.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.9 1 0 0 1 1 1 0 PHP-associated DUF3592 PF12158.8 gi|344209906|ref|YP_004786083.1| - 1.2e-16 61.1 0.2 1.5e-16 60.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) DUF5602 PF18197.1 gi|344209907|ref|YP_004786084.1| - 0.02 15.4 0.0 0.74 10.4 0.0 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF5602) AAA_16 PF13191.6 gi|344209908|ref|YP_004786085.1| - 8.2e-05 23.0 2.8 0.13 12.7 0.6 4.0 3 1 0 3 3 3 2 AAA ATPase domain AAA_33 PF13671.6 gi|344209908|ref|YP_004786085.1| - 0.051 13.7 0.0 10 6.2 0.0 3.3 2 0 0 2 2 2 0 AAA domain 4HBT PF03061.22 gi|344209909|ref|YP_004786086.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase superfamily UPF0261 PF06792.11 gi|344209911|ref|YP_004786088.1| - 5e-168 559.2 6.0 5.6e-168 559.1 6.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0261) HisG PF01634.18 gi|344209911|ref|YP_004786088.1| - 0.00029 20.9 0.1 0.00076 19.5 0.1 1.7 1 0 0 1 1 1 1 ATP phosphoribosyltransferase SpoVS PF04232.12 gi|344209911|ref|YP_004786088.1| - 0.093 12.5 0.8 0.8 9.5 0.0 2.6 3 0 0 3 3 3 0 Stage V sporulation protein S (SpoVS) Cupin_2 PF07883.11 gi|344209912|ref|YP_004786089.1| - 2.3e-19 68.9 0.8 4e-19 68.1 0.8 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|344209912|ref|YP_004786089.1| - 8.5e-08 31.9 0.0 1.2e-07 31.5 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|344209912|ref|YP_004786089.1| - 2.2e-07 30.4 0.4 3.7e-07 29.8 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|344209912|ref|YP_004786089.1| - 8.8e-07 28.9 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|344209912|ref|YP_004786089.1| - 1.4e-05 25.2 0.0 2.1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.7 gi|344209912|ref|YP_004786089.1| - 0.00023 21.0 0.1 0.00034 20.5 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.18 gi|344209912|ref|YP_004786089.1| - 0.00035 20.5 0.0 0.00043 20.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase ARD PF03079.14 gi|344209912|ref|YP_004786089.1| - 0.028 14.6 0.2 0.041 14.1 0.2 1.2 1 0 0 1 1 1 0 ARD/ARD' family DMSP_lyase PF16867.5 gi|344209912|ref|YP_004786089.1| - 0.073 12.7 0.0 0.093 12.4 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase NapD PF03927.13 gi|344209912|ref|YP_004786089.1| - 0.16 12.0 0.2 0.31 11.1 0.0 1.6 2 0 0 2 2 2 0 NapD protein PEP_hydrolase PF09370.10 gi|344209913|ref|YP_004786090.1| - 2.9e-129 430.0 0.2 3.3e-129 429.8 0.2 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate hydrolase-like NMO PF03060.15 gi|344209913|ref|YP_004786090.1| - 0.016 14.6 0.1 0.026 13.9 0.1 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase DUF3287 PF11690.8 gi|344209914|ref|YP_004786091.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) Cyt_bd_oxida_I PF01654.17 gi|344209915|ref|YP_004786092.1| - 2.7e-139 464.4 20.7 3.2e-139 464.2 20.7 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 gi|344209916|ref|YP_004786093.1| - 7.9e-64 215.9 28.1 9e-64 215.7 28.1 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II E1-E2_ATPase PF00122.20 gi|344209917|ref|YP_004786094.1| - 4.1e-43 147.0 0.2 4.1e-43 147.0 0.2 2.4 2 1 2 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|344209917|ref|YP_004786094.1| - 5.7e-31 108.4 2.9 1.2e-30 107.4 2.9 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|344209917|ref|YP_004786094.1| - 1.4e-08 35.1 0.0 6.8e-08 32.9 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|344209917|ref|YP_004786094.1| - 2.3e-05 24.2 0.1 3.6e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|344209917|ref|YP_004786094.1| - 0.0092 16.7 1.1 0.022 15.5 0.3 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.6 gi|344209918|ref|YP_004786095.1| - 1.4e-31 110.0 18.0 1.7e-31 109.7 18.0 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Chlorosome_CsmC PF11098.8 gi|344209918|ref|YP_004786095.1| - 0.02 14.9 0.9 1.5 8.8 0.1 2.4 1 1 1 2 2 2 0 Chlorosome envelope protein C Y1_Tnp PF01797.16 gi|344209919|ref|YP_004786096.1| - 0.0083 16.2 0.0 0.0094 16.1 0.0 1.1 1 0 0 1 1 1 1 Transposase IS200 like DDE_Tnp_IS240 PF13610.6 gi|344209920|ref|YP_004786097.1| - 3.8e-18 66.1 0.1 5.3e-18 65.6 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|344209920|ref|YP_004786097.1| - 2.5e-06 27.2 1.1 4.5e-06 26.3 1.1 1.5 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|344209920|ref|YP_004786097.1| - 0.0096 15.9 0.6 0.15 12.1 0.0 2.5 3 0 0 3 3 3 1 Protein of unknown function (DUF2384) Cas_CXXC_CXXC PF09706.10 gi|344209921|ref|YP_004786098.1| - 0.086 13.1 1.2 0.61 10.4 0.2 2.2 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) FYVE PF01363.21 gi|344209921|ref|YP_004786098.1| - 0.2 11.8 5.8 2.4 8.4 0.4 2.6 1 1 1 2 2 2 0 FYVE zinc finger E1-E2_ATPase PF00122.20 gi|344209922|ref|YP_004786099.1| - 3e-50 170.2 0.7 3e-50 170.2 0.7 2.2 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|344209922|ref|YP_004786099.1| - 1.2e-38 132.6 3.9 2.8e-38 131.5 3.9 1.6 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|344209922|ref|YP_004786099.1| - 1.4e-21 77.7 0.2 4.2e-21 76.2 0.2 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|344209922|ref|YP_004786099.1| - 1.9e-21 75.5 0.0 8.2e-21 73.5 0.0 2.2 2 0 0 2 2 2 1 Cation transporter/ATPase, N-terminus Cation_ATPase PF13246.6 gi|344209922|ref|YP_004786099.1| - 1.8e-16 60.0 0.0 9.3e-16 57.7 0.0 2.2 3 0 0 3 3 3 1 Cation transport ATPase (P-type) HAD PF12710.7 gi|344209922|ref|YP_004786099.1| - 0.00038 20.9 0.0 0.00096 19.6 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|344209922|ref|YP_004786099.1| - 0.00056 19.7 2.6 0.026 14.3 0.9 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Phage_holin_2_3 PF16080.5 gi|344209922|ref|YP_004786099.1| - 0.18 11.6 0.2 0.74 9.6 0.2 2.0 1 0 0 1 1 1 0 Bacteriophage holin family HP1 DUF4395 PF14340.6 gi|344209922|ref|YP_004786099.1| - 6.9 7.0 11.3 0.36 11.2 1.3 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4395) Pyridox_ox_2 PF12900.7 gi|344209923|ref|YP_004786100.1| - 5.4e-18 65.3 0.0 6.1e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344209923|ref|YP_004786100.1| - 2.8e-05 24.2 0.0 3.8e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CBS PF00571.28 gi|344209924|ref|YP_004786101.1| - 9.3e-22 77.2 2.4 1e-09 38.7 0.4 2.6 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.19 gi|344209924|ref|YP_004786101.1| - 1.8e-17 63.0 0.0 4.8e-17 61.7 0.0 1.7 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344209924|ref|YP_004786101.1| - 2.3e-06 27.8 0.0 8.3e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase TruB_C PF09142.11 gi|344209924|ref|YP_004786101.1| - 0.093 12.5 0.1 0.82 9.5 0.0 2.4 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal Cnd1 PF12717.7 gi|344209925|ref|YP_004786102.1| - 6.9e-20 71.7 0.0 2.5e-06 27.6 0.0 3.4 2 1 1 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.6 gi|344209925|ref|YP_004786102.1| - 1.3e-18 67.2 26.8 3.7e-06 27.2 1.1 5.0 2 2 3 5 5 5 5 HEAT repeats HEAT PF02985.22 gi|344209925|ref|YP_004786102.1| - 2.2e-17 61.6 13.3 0.00088 19.3 0.2 7.4 7 0 0 7 7 7 4 HEAT repeat Adaptin_N PF01602.20 gi|344209925|ref|YP_004786102.1| - 1.2e-13 50.5 0.0 0.00092 17.9 0.0 3.3 2 1 1 3 3 3 3 Adaptin N terminal region HEAT_EZ PF13513.6 gi|344209925|ref|YP_004786102.1| - 1.3e-11 44.7 18.3 0.0034 17.8 0.4 5.9 6 1 1 7 7 6 4 HEAT-like repeat HEAT_PBS PF03130.16 gi|344209925|ref|YP_004786102.1| - 0.002 18.6 15.9 10 7.2 0.2 8.8 10 1 0 10 10 9 1 PBS lyase HEAT-like repeat HEAT_UF PF18817.1 gi|344209925|ref|YP_004786102.1| - 0.014 15.6 0.0 0.45 10.8 0.0 2.8 2 1 1 3 3 3 0 Repeat of uncharacterized protein PH0542 API5 PF05918.11 gi|344209925|ref|YP_004786102.1| - 0.035 12.9 0.5 29 3.3 0.0 3.3 2 1 0 3 3 3 0 Apoptosis inhibitory protein 5 (API5) DNA_alkylation PF08713.11 gi|344209925|ref|YP_004786102.1| - 0.06 13.1 0.2 21 4.7 0.0 3.5 3 2 0 3 3 3 0 DNA alkylation repair enzyme Gp49 PF05973.14 gi|344209925|ref|YP_004786102.1| - 0.065 13.4 0.0 46 4.3 0.0 3.5 3 1 0 3 3 3 0 Phage derived protein Gp49-like (DUF891) Vac14_Fab1_bd PF12755.7 gi|344209925|ref|YP_004786102.1| - 0.1 13.2 0.0 17 6.1 0.0 3.3 3 1 0 3 3 3 0 Vacuolar 14 Fab1-binding region Arm PF00514.23 gi|344209925|ref|YP_004786102.1| - 0.14 12.3 0.5 3 8.0 0.0 3.4 3 0 0 3 3 3 0 Armadillo/beta-catenin-like repeat HTH_AsnC-type PF13404.6 gi|344209926|ref|YP_004786103.1| - 2.8e-13 49.4 1.4 5e-13 48.6 1.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|344209926|ref|YP_004786103.1| - 7.4e-11 41.4 0.4 1.3e-10 40.7 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|344209926|ref|YP_004786103.1| - 0.00025 20.9 0.1 0.00073 19.4 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344209926|ref|YP_004786103.1| - 0.00026 21.0 0.0 0.00054 20.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|344209926|ref|YP_004786103.1| - 0.00041 20.8 0.1 0.00093 19.6 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|344209926|ref|YP_004786103.1| - 0.00042 20.2 0.0 0.00093 19.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|344209926|ref|YP_004786103.1| - 0.0027 17.4 0.2 0.0063 16.2 0.2 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|344209926|ref|YP_004786103.1| - 0.0065 16.3 0.0 0.016 15.1 0.0 1.7 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|344209926|ref|YP_004786103.1| - 0.0079 16.0 0.0 0.03 14.1 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain TOBE_2 PF08402.10 gi|344209926|ref|YP_004786103.1| - 0.051 13.7 0.7 0.19 11.9 0.1 2.0 2 0 0 2 2 2 0 TOBE domain HTH_23 PF13384.6 gi|344209926|ref|YP_004786103.1| - 0.067 13.0 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|344209926|ref|YP_004786103.1| - 0.094 12.6 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|344209926|ref|YP_004786103.1| - 0.097 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_CodY PF08222.11 gi|344209926|ref|YP_004786103.1| - 0.11 12.1 0.0 0.28 10.8 0.0 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain Hydrolase PF00702.26 gi|344209927|ref|YP_004786104.1| - 6.6e-23 82.1 2.3 9e-23 81.7 2.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344209927|ref|YP_004786104.1| - 5.1e-06 27.0 0.0 8e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|344209927|ref|YP_004786104.1| - 0.00016 21.6 0.2 0.01 15.6 0.4 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.18 gi|344209927|ref|YP_004786104.1| - 0.05 13.6 0.1 0.071 13.1 0.1 1.3 1 0 0 1 1 1 0 DNA photolyase HigB-like_toxin PF05015.13 gi|344209928|ref|YP_004786105.1| - 0.12 12.8 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 RelE-like toxin of type II toxin-antitoxin system HigB CE2_N PF17996.1 gi|344209930|ref|YP_004786107.1| - 0.16 12.0 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate esterase 2 N-terminal UPF0175 PF03683.13 gi|344209931|ref|YP_004786108.1| - 8.8e-23 79.8 0.8 9.8e-23 79.7 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) zf-H3C2 PF16721.5 gi|344209931|ref|YP_004786108.1| - 0.2 12.0 0.0 0.23 11.9 0.0 1.1 1 0 0 1 1 1 0 Zinc-finger like, probable DNA-binding DUF3368 PF11848.8 gi|344209932|ref|YP_004786109.1| - 1.5e-12 47.1 0.0 2.6e-12 46.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) HypA PF01155.19 gi|344209933|ref|YP_004786110.1| - 0.0051 16.8 5.4 0.77 9.8 0.1 2.3 2 0 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|344209933|ref|YP_004786110.1| - 0.016 15.2 1.9 0.016 15.2 1.9 3.0 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|344209933|ref|YP_004786110.1| - 0.024 15.4 5.4 0.07 13.9 0.3 2.5 2 1 0 2 2 2 0 zinc-ribbon family Baculo_LEF5_C PF11792.8 gi|344209933|ref|YP_004786110.1| - 0.088 12.5 0.0 0.088 12.5 0.0 2.8 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain DUF2116 PF09889.9 gi|344209933|ref|YP_004786110.1| - 0.11 12.6 0.6 0.23 11.5 0.6 1.5 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) RNA_POL_M_15KD PF02150.16 gi|344209933|ref|YP_004786110.1| - 0.14 12.1 3.8 16 5.5 0.0 3.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|344209933|ref|YP_004786110.1| - 0.9 10.0 6.4 7.9 6.9 0.2 3.4 3 1 1 4 4 4 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|344209933|ref|YP_004786110.1| - 2.5 8.2 12.8 1.5 8.8 2.1 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|344209933|ref|YP_004786110.1| - 4.8 6.9 10.2 2.7 7.6 0.8 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-C2HC5 PF06221.13 gi|344209933|ref|YP_004786110.1| - 5 7.2 6.7 0.73 9.9 0.1 2.6 2 1 1 3 3 3 0 Putative zinc finger motif, C2HC5-type ABC_tran PF00005.27 gi|344209934|ref|YP_004786111.1| - 2.9e-31 108.8 0.0 4.3e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|344209934|ref|YP_004786111.1| - 1.2e-18 67.3 0.3 2.5e-18 66.3 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|344209934|ref|YP_004786111.1| - 2e-06 27.9 0.0 0.00066 19.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209934|ref|YP_004786111.1| - 0.00012 21.6 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344209934|ref|YP_004786111.1| - 0.0002 21.6 0.1 0.0014 19.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209934|ref|YP_004786111.1| - 0.00022 21.7 1.5 0.0005 20.5 1.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|344209934|ref|YP_004786111.1| - 0.0015 17.9 0.0 0.021 14.2 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|344209934|ref|YP_004786111.1| - 0.0019 18.1 0.1 0.0035 17.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase Zeta_toxin PF06414.12 gi|344209934|ref|YP_004786111.1| - 0.0035 16.7 0.1 0.0071 15.6 0.1 1.5 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|344209934|ref|YP_004786111.1| - 0.007 16.8 0.0 0.07 13.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|344209934|ref|YP_004786111.1| - 0.012 15.6 0.2 0.33 11.0 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|344209934|ref|YP_004786111.1| - 0.028 14.1 0.0 0.049 13.3 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.26 gi|344209934|ref|YP_004786111.1| - 0.045 13.5 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain SbcCD_C PF13558.6 gi|344209934|ref|YP_004786111.1| - 0.059 13.6 0.1 0.15 12.3 0.1 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|344209934|ref|YP_004786111.1| - 0.076 12.8 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|344209934|ref|YP_004786111.1| - 0.11 12.9 0.0 0.2 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|344209934|ref|YP_004786111.1| - 0.13 12.1 0.6 0.98 9.3 0.1 2.2 2 0 0 2 2 2 0 NTPase NB-ARC PF00931.22 gi|344209934|ref|YP_004786111.1| - 0.16 11.2 0.1 0.26 10.4 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|344209934|ref|YP_004786111.1| - 0.17 11.6 0.1 0.62 9.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|344209934|ref|YP_004786111.1| - 0.17 11.8 0.1 0.35 10.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|344209934|ref|YP_004786111.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_13 PF13166.6 gi|344209934|ref|YP_004786111.1| - 0.2 10.3 0.3 0.69 8.5 0.1 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|344209935|ref|YP_004786112.1| - 7.2e-27 94.6 0.0 1.2e-26 93.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|344209935|ref|YP_004786112.1| - 3.6e-16 59.4 0.3 6.5e-16 58.6 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|344209935|ref|YP_004786112.1| - 0.00012 22.4 0.5 0.018 15.3 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209935|ref|YP_004786112.1| - 0.0049 17.3 1.3 0.013 15.9 1.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|344209935|ref|YP_004786112.1| - 0.0072 16.2 4.7 0.022 14.5 1.3 2.7 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209935|ref|YP_004786112.1| - 0.0078 15.7 0.1 0.26 10.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 gi|344209935|ref|YP_004786112.1| - 0.011 15.8 0.2 0.028 14.5 0.2 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_7 PF12775.7 gi|344209935|ref|YP_004786112.1| - 0.069 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP-synt_ab PF00006.25 gi|344209935|ref|YP_004786112.1| - 0.094 12.4 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|344209935|ref|YP_004786112.1| - 0.14 11.9 0.2 0.28 10.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.22 gi|344209936|ref|YP_004786113.1| - 3.1e-31 108.5 9.6 3.1e-31 108.5 9.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|344209936|ref|YP_004786113.1| - 0.0002 21.2 0.0 0.0002 21.2 0.0 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|344209937|ref|YP_004786114.1| - 1.7e-40 138.8 7.6 1.7e-40 138.8 7.6 1.8 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|344209937|ref|YP_004786114.1| - 0.32 11.6 0.2 0.32 11.6 0.2 2.2 3 0 0 3 3 3 0 Renin receptor-like protein SBP_bac_5 PF00496.22 gi|344209938|ref|YP_004786115.1| - 4.2e-82 276.1 0.0 5.7e-82 275.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_5 PF00496.22 gi|344209939|ref|YP_004786116.1| - 4.1e-66 223.5 0.5 5.3e-66 223.1 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle GSIII_N PF12437.8 gi|344209939|ref|YP_004786116.1| - 0.0081 15.8 0.1 0.024 14.3 0.1 1.7 2 0 0 2 2 2 1 Glutamine synthetase type III N terminal TAT_signal PF10518.9 gi|344209939|ref|YP_004786116.1| - 0.019 14.8 1.4 0.037 13.9 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cdc6_C PF09079.11 gi|344209943|ref|YP_004786119.1| - 5e-22 77.7 0.0 1.7e-21 76.0 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|344209943|ref|YP_004786119.1| - 3.3e-10 40.4 0.0 7.6e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209943|ref|YP_004786119.1| - 1.2e-09 38.8 0.3 1.4e-08 35.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|344209943|ref|YP_004786119.1| - 0.0021 17.3 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.29 gi|344209943|ref|YP_004786119.1| - 0.0053 17.2 0.0 0.013 15.9 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|344209943|ref|YP_004786119.1| - 0.0072 16.3 0.0 0.015 15.2 0.0 1.5 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|344209943|ref|YP_004786119.1| - 0.0088 16.0 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|344209943|ref|YP_004786119.1| - 0.035 14.5 0.0 0.072 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|344209943|ref|YP_004786119.1| - 0.054 13.0 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DEAD PF00270.29 gi|344209943|ref|YP_004786119.1| - 0.083 12.7 0.3 5.4 6.8 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase HalOD1 PF18545.1 gi|344209944|ref|YP_004786120.1| - 5.1e-15 55.5 0.3 6.5e-15 55.2 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Hemopexin PF00045.19 gi|344209945|ref|YP_004786121.1| - 0.011 15.6 1.1 0.11 12.5 0.5 2.5 2 0 0 2 2 2 0 Hemopexin TnpW PF14202.6 gi|344209945|ref|YP_004786121.1| - 0.29 11.0 0.5 0.6 10.0 0.5 1.5 1 0 0 1 1 1 0 Transposon-encoded protein TnpW TetR_C_6 PF13977.6 gi|344209946|ref|YP_004786122.1| - 3.8e-13 49.7 0.2 4.3e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_31 PF17940.1 gi|344209946|ref|YP_004786122.1| - 6.9e-06 26.2 0.0 8.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344209946|ref|YP_004786122.1| - 1.3e-05 25.2 0.1 1.7e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|344209946|ref|YP_004786122.1| - 0.00017 21.8 0.3 0.00032 21.0 0.1 1.6 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|344209946|ref|YP_004786122.1| - 0.003 17.6 0.1 0.004 17.2 0.1 1.3 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_17 PF17922.1 gi|344209946|ref|YP_004786122.1| - 0.049 13.7 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain CARDB PF07705.11 gi|344209947|ref|YP_004786123.1| - 1.5e-14 54.0 25.7 0.0023 18.1 0.1 5.5 5 0 0 5 5 5 5 CARDB NPCBM_assoc PF10633.9 gi|344209947|ref|YP_004786123.1| - 1.7e-13 50.6 18.6 9.5e-05 22.6 0.4 7.9 6 3 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|344209947|ref|YP_004786123.1| - 3.2e-07 30.5 37.6 0.069 13.5 1.2 7.0 5 3 0 5 5 5 5 Domain of unknown function DUF11 ASH PF15780.5 gi|344209947|ref|YP_004786123.1| - 1.5e-05 25.1 10.6 0.066 13.4 0.0 5.3 5 1 0 5 5 5 2 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Fn3-like PF14310.6 gi|344209947|ref|YP_004786123.1| - 5.5e-05 23.2 12.5 0.95 9.6 0.2 7.3 9 0 0 9 9 8 1 Fibronectin type III-like domain N_BRCA1_IG PF16158.5 gi|344209947|ref|YP_004786123.1| - 0.00017 22.3 2.3 5.7 7.7 0.1 5.2 6 0 0 6 6 6 1 Ig-like domain from next to BRCA1 gene Transglut_C PF00927.22 gi|344209947|ref|YP_004786123.1| - 0.00094 19.3 0.2 12 6.1 0.0 4.5 5 0 0 5 5 5 1 Transglutaminase family, C-terminal ig like domain DUF4832 PF16116.5 gi|344209947|ref|YP_004786123.1| - 0.0028 17.5 4.9 11 5.7 0.0 4.9 4 1 1 5 5 5 1 Domain of unknown function (DUF4832) FAS_meander PF17951.1 gi|344209947|ref|YP_004786123.1| - 0.025 14.4 0.0 0.14 11.9 0.0 2.3 1 0 0 1 1 1 0 Fatty acid synthase meander beta sheet domain AP3B1_C PF14796.6 gi|344209947|ref|YP_004786123.1| - 0.032 14.5 3.3 0.24 11.6 0.0 3.2 4 0 0 4 4 4 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal BppU_N PF10651.9 gi|344209947|ref|YP_004786123.1| - 0.036 13.8 0.5 0.13 12.0 0.1 2.1 2 0 0 2 2 2 0 BppU N-terminal domain Alpha_adaptinC2 PF02883.20 gi|344209947|ref|YP_004786123.1| - 0.04 14.2 1.1 2.2 8.6 0.0 3.1 3 0 0 3 3 3 0 Adaptin C-terminal domain MBG PF17883.1 gi|344209947|ref|YP_004786123.1| - 0.056 14.0 0.4 0.056 14.0 0.4 4.9 4 2 1 5 5 5 0 MBG domain Pilin PF00114.19 gi|344209947|ref|YP_004786123.1| - 3.7 8.5 19.1 6.5 7.7 0.1 5.1 5 0 0 5 5 5 0 Pilin (bacterial filament) MMPL PF03176.15 gi|344209948|ref|YP_004786124.1| - 2e-27 96.0 26.0 4.7e-20 71.8 1.7 2.7 2 1 0 2 2 2 2 MMPL family Patched PF02460.18 gi|344209948|ref|YP_004786124.1| - 8.5e-08 30.8 12.8 5.8e-07 28.0 5.9 2.4 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|344209948|ref|YP_004786124.1| - 1.2e-06 28.4 4.4 0.00032 20.6 0.5 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation TetR_C_6 PF13977.6 gi|344209949|ref|YP_004786125.1| - 2.8e-13 50.1 0.0 4.2e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344209949|ref|YP_004786125.1| - 1.4e-10 40.8 0.6 5.4e-10 38.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|344209949|ref|YP_004786125.1| - 0.00025 21.3 0.3 0.00056 20.1 0.2 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344209949|ref|YP_004786125.1| - 0.016 15.3 0.2 0.032 14.3 0.2 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|344209949|ref|YP_004786125.1| - 0.018 15.0 0.2 0.028 14.5 0.2 1.2 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_29 PF17938.1 gi|344209949|ref|YP_004786125.1| - 0.04 14.0 0.4 0.089 12.9 0.0 1.8 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_36 PF18598.1 gi|344209949|ref|YP_004786125.1| - 0.053 13.5 0.2 0.17 11.9 0.1 1.8 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_38 PF13936.6 gi|344209949|ref|YP_004786125.1| - 0.055 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_37 PF18665.1 gi|344209949|ref|YP_004786125.1| - 0.083 13.5 0.1 0.21 12.2 0.0 1.7 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain LUD_dom PF02589.15 gi|344209950|ref|YP_004786126.1| - 8.4e-40 136.5 0.1 1e-39 136.2 0.1 1.2 1 0 0 1 1 1 1 LUD domain OKR_DC_1_N PF03709.15 gi|344209950|ref|YP_004786126.1| - 0.016 15.5 0.1 0.044 14.1 0.1 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain YcaO PF02624.16 gi|344209950|ref|YP_004786126.1| - 0.025 13.8 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding Secretin_N PF03958.17 gi|344209950|ref|YP_004786126.1| - 0.027 14.9 1.0 0.096 13.1 0.7 2.2 1 1 1 2 2 2 0 Bacterial type II/III secretion system short domain UPF0180 PF03698.13 gi|344209950|ref|YP_004786126.1| - 0.036 14.2 0.1 0.096 12.9 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) RsgA_GTPase PF03193.16 gi|344209950|ref|YP_004786126.1| - 0.037 13.9 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase CHASE2 PF05226.11 gi|344209950|ref|YP_004786126.1| - 0.06 13.0 0.1 0.061 13.0 0.1 1.2 1 0 0 1 1 1 0 CHASE2 domain PrpR_N PF06506.11 gi|344209950|ref|YP_004786126.1| - 0.071 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Propionate catabolism activator Peripla_BP_2 PF01497.18 gi|344209951|ref|YP_004786127.1| - 4.4e-13 49.3 0.0 2.8e-12 46.7 0.0 1.9 2 0 0 2 2 2 1 Periplasmic binding protein FecCD PF01032.18 gi|344209952|ref|YP_004786128.1| - 2e-84 283.2 34.6 2.6e-84 282.9 34.6 1.2 1 0 0 1 1 1 1 FecCD transport family PT-VENN PF04829.13 gi|344209952|ref|YP_004786128.1| - 0.26 11.4 6.7 0.56 10.3 0.1 3.6 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif ABC_tran PF00005.27 gi|344209953|ref|YP_004786129.1| - 8.9e-30 104.0 0.0 1.3e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209953|ref|YP_004786129.1| - 3.7e-13 49.9 1.9 5.4e-06 26.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209953|ref|YP_004786129.1| - 5.9e-13 48.8 0.2 1.4e-06 27.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344209953|ref|YP_004786129.1| - 4.5e-07 29.9 0.0 6.6e-05 22.8 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344209953|ref|YP_004786129.1| - 5.5e-07 29.2 0.0 1.4e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|344209953|ref|YP_004786129.1| - 2.6e-05 23.2 1.3 0.047 12.5 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|344209953|ref|YP_004786129.1| - 7.6e-05 23.0 0.2 0.00045 20.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209953|ref|YP_004786129.1| - 0.00011 22.6 0.1 0.00024 21.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|344209953|ref|YP_004786129.1| - 0.00023 20.8 0.3 0.013 15.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|344209953|ref|YP_004786129.1| - 0.00036 21.1 0.0 0.00061 20.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344209953|ref|YP_004786129.1| - 0.0031 17.3 0.1 0.006 16.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344209953|ref|YP_004786129.1| - 0.0068 16.6 0.1 0.021 15.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|344209953|ref|YP_004786129.1| - 0.013 15.6 0.1 0.44 10.6 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase TniB PF05621.11 gi|344209953|ref|YP_004786129.1| - 0.014 14.9 0.1 0.45 9.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein MukB PF04310.12 gi|344209953|ref|YP_004786129.1| - 0.016 15.1 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_28 PF13521.6 gi|344209953|ref|YP_004786129.1| - 0.017 15.4 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|344209953|ref|YP_004786129.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|344209953|ref|YP_004786129.1| - 0.02 14.8 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|344209953|ref|YP_004786129.1| - 0.027 14.5 0.0 0.083 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|344209953|ref|YP_004786129.1| - 0.03 13.1 0.0 1.2 7.9 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATP_bind_1 PF03029.17 gi|344209953|ref|YP_004786129.1| - 0.032 14.0 0.1 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|344209953|ref|YP_004786129.1| - 0.039 14.4 0.1 0.14 12.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|344209953|ref|YP_004786129.1| - 0.063 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|344209953|ref|YP_004786129.1| - 0.072 13.5 0.0 0.22 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|344209953|ref|YP_004786129.1| - 0.073 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|344209953|ref|YP_004786129.1| - 0.08 12.2 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|344209953|ref|YP_004786129.1| - 0.096 12.4 0.2 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|344209953|ref|YP_004786129.1| - 0.098 12.2 0.2 0.19 11.3 0.2 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|344209953|ref|YP_004786129.1| - 0.1 12.5 0.2 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|344209953|ref|YP_004786129.1| - 0.15 12.1 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) VirE PF05272.11 gi|344209953|ref|YP_004786129.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Virulence-associated protein E AAA_18 PF13238.6 gi|344209953|ref|YP_004786129.1| - 0.17 12.4 0.0 0.47 11.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain PAPS_reduct PF01507.19 gi|344209953|ref|YP_004786129.1| - 0.2 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family SBF PF01758.16 gi|344209954|ref|YP_004786130.1| - 7.1e-38 130.2 10.5 9.9e-38 129.8 10.5 1.2 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|344209954|ref|YP_004786130.1| - 6.5e-14 52.0 8.3 9.1e-14 51.5 8.3 1.3 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) CBP_BcsF PF11120.8 gi|344209954|ref|YP_004786130.1| - 0.045 13.9 0.3 0.15 12.2 0.3 2.0 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF Mem_trans PF03547.18 gi|344209954|ref|YP_004786130.1| - 0.2 10.0 9.2 0.014 13.9 3.3 1.9 1 1 1 2 2 2 0 Membrane transport protein Bestrophin PF01062.21 gi|344209954|ref|YP_004786130.1| - 0.22 10.8 0.9 0.47 9.8 0.9 1.5 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel Bac_export_2 PF01312.19 gi|344209954|ref|YP_004786130.1| - 0.51 9.5 4.0 0.93 8.6 4.0 1.4 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family UbiA PF01040.18 gi|344209955|ref|YP_004786131.1| - 5.2e-16 58.7 18.9 7.7e-16 58.1 18.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family HisKA_7TM PF16927.5 gi|344209956|ref|YP_004786132.1| - 3.3e-52 177.7 16.0 4.2e-52 177.4 16.0 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|344209956|ref|YP_004786132.1| - 4.2e-13 49.8 0.1 8e-13 48.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344209956|ref|YP_004786132.1| - 9.5e-06 25.6 0.1 2e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|344209956|ref|YP_004786132.1| - 0.00061 20.0 0.1 0.0034 17.6 0.1 2.2 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344209956|ref|YP_004786132.1| - 0.0008 19.4 0.0 0.0037 17.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|344209956|ref|YP_004786132.1| - 0.0016 18.6 0.0 0.0058 16.9 0.0 1.9 1 1 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344209956|ref|YP_004786132.1| - 0.0038 17.2 0.1 0.013 15.5 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|344209956|ref|YP_004786132.1| - 0.015 15.9 0.0 0.056 14.0 0.0 2.0 1 1 1 2 2 2 0 PAS domain HATPase_c_3 PF13589.6 gi|344209956|ref|YP_004786132.1| - 0.041 13.7 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TusA PF01206.17 gi|344209957|ref|YP_004786133.1| - 7.9e-07 28.8 0.0 1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2270 PF10028.9 gi|344209958|ref|YP_004786134.1| - 3.9e-74 248.2 4.9 4.6e-74 248.0 4.9 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Acyl_transf_3 PF01757.22 gi|344209958|ref|YP_004786134.1| - 0.025 13.6 0.2 0.025 13.6 0.2 2.0 2 0 0 2 2 2 0 Acyltransferase family Jnk-SapK_ap_N PF09744.9 gi|344209959|ref|YP_004786135.1| - 0.00011 22.4 17.3 0.00013 22.2 17.3 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 Atg14 PF10186.9 gi|344209959|ref|YP_004786135.1| - 0.0014 17.7 10.1 0.0018 17.4 10.1 1.0 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Tho2 PF11262.8 gi|344209959|ref|YP_004786135.1| - 0.0017 17.6 8.3 0.0019 17.4 8.3 1.0 1 0 0 1 1 1 1 Transcription factor/nuclear export subunit protein 2 Golgin_A5 PF09787.9 gi|344209959|ref|YP_004786135.1| - 0.0024 17.4 14.2 0.0031 17.0 14.2 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 ERM PF00769.19 gi|344209959|ref|YP_004786135.1| - 0.0083 16.0 15.4 0.01 15.6 15.4 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family PEARLI-4 PF05278.12 gi|344209959|ref|YP_004786135.1| - 0.019 14.5 6.3 0.026 14.1 6.3 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) ADIP PF11559.8 gi|344209959|ref|YP_004786135.1| - 0.028 14.5 16.7 0.037 14.1 16.7 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding YabA PF06156.13 gi|344209959|ref|YP_004786135.1| - 0.036 14.7 13.9 0.83 10.3 13.9 2.2 1 1 0 1 1 1 0 Initiation control protein YabA DUF3450 PF11932.8 gi|344209959|ref|YP_004786135.1| - 0.044 13.1 10.0 0.05 12.9 10.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) KASH_CCD PF14662.6 gi|344209959|ref|YP_004786135.1| - 0.046 13.6 15.5 0.06 13.2 15.5 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH GBP_C PF02841.14 gi|344209959|ref|YP_004786135.1| - 0.053 12.9 13.0 0.063 12.7 13.0 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF3552 PF12072.8 gi|344209959|ref|YP_004786135.1| - 0.067 12.6 16.2 0.08 12.3 16.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) RasGAP_C PF03836.15 gi|344209959|ref|YP_004786135.1| - 0.069 13.3 5.8 0.077 13.1 5.8 1.1 1 0 0 1 1 1 0 RasGAP C-terminus Fez1 PF06818.15 gi|344209959|ref|YP_004786135.1| - 0.1 13.1 12.5 0.12 12.8 12.5 1.1 1 0 0 1 1 1 0 Fez1 Thioesterase PF00975.20 gi|344209959|ref|YP_004786135.1| - 0.11 12.6 0.8 0.14 12.3 0.8 1.0 1 0 0 1 1 1 0 Thioesterase domain DivIVA PF05103.13 gi|344209959|ref|YP_004786135.1| - 0.11 12.6 13.7 0.14 12.2 13.7 1.1 1 0 0 1 1 1 0 DivIVA protein UPF0242 PF06785.11 gi|344209959|ref|YP_004786135.1| - 0.11 12.5 14.0 0.15 12.2 14.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 gi|344209959|ref|YP_004786135.1| - 0.13 11.1 14.6 0.16 10.8 14.6 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Fungal_TACC PF12709.7 gi|344209959|ref|YP_004786135.1| - 0.14 12.6 12.0 0.16 12.4 2.8 2.5 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins MAT1 PF06391.13 gi|344209959|ref|YP_004786135.1| - 0.17 11.7 11.3 0.2 11.4 11.3 1.1 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 TMPIT PF07851.13 gi|344209959|ref|YP_004786135.1| - 0.2 10.9 7.7 0.24 10.6 7.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF641 PF04859.12 gi|344209959|ref|YP_004786135.1| - 0.2 12.0 10.2 0.21 11.9 9.5 1.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) KxDL PF10241.9 gi|344209959|ref|YP_004786135.1| - 0.22 11.8 11.2 0.11 12.7 6.9 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein FUSC PF04632.12 gi|344209959|ref|YP_004786135.1| - 0.3 9.5 4.7 0.35 9.3 4.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3584 PF12128.8 gi|344209959|ref|YP_004786135.1| - 0.37 8.2 13.4 0.43 8.0 13.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|344209959|ref|YP_004786135.1| - 0.38 10.1 9.4 0.49 9.7 9.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|344209959|ref|YP_004786135.1| - 0.39 10.2 6.6 0.45 10.0 6.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Flu_NS2 PF00601.19 gi|344209959|ref|YP_004786135.1| - 0.48 10.8 3.7 0.99 9.7 3.7 1.6 1 1 0 1 1 1 0 Influenza non-structural protein (NS2) Lectin_N PF03954.14 gi|344209959|ref|YP_004786135.1| - 0.49 10.1 5.7 0.73 9.6 5.7 1.3 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain Fmp27_WPPW PF10359.9 gi|344209959|ref|YP_004786135.1| - 0.51 9.1 9.7 0.58 8.9 9.7 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.12 gi|344209959|ref|YP_004786135.1| - 0.63 10.1 10.2 2.7 8.0 9.8 1.8 1 1 1 2 2 2 0 Laminin Domain II Pup PF05639.11 gi|344209959|ref|YP_004786135.1| - 0.65 10.9 7.4 0.61 11.0 5.5 2.0 1 1 1 2 2 1 0 Pup-like protein Bap31_Bap29_C PF18035.1 gi|344209959|ref|YP_004786135.1| - 1.1 9.3 10.9 5.4 7.1 10.3 2.2 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain TolA_bind_tri PF16331.5 gi|344209959|ref|YP_004786135.1| - 1.2 9.3 15.2 2.1 8.5 8.5 2.4 1 1 1 2 2 2 0 TolA binding protein trimerisation FapA PF03961.13 gi|344209959|ref|YP_004786135.1| - 1.2 7.6 7.3 1.4 7.5 7.3 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A ZapB PF06005.12 gi|344209959|ref|YP_004786135.1| - 1.6 9.3 23.1 0.79 10.2 13.9 2.3 1 1 1 2 2 2 0 Cell division protein ZapB PRKG1_interact PF15898.5 gi|344209959|ref|YP_004786135.1| - 1.8 9.5 17.7 5.8 7.9 17.7 1.9 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain CorA PF01544.18 gi|344209959|ref|YP_004786135.1| - 2.2 7.5 6.2 2.9 7.1 6.2 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DivIC PF04977.15 gi|344209959|ref|YP_004786135.1| - 2.3 8.0 16.5 0.41 10.4 5.9 2.4 1 1 1 2 2 2 0 Septum formation initiator NYD-SP28_assoc PF14775.6 gi|344209959|ref|YP_004786135.1| - 2.8 8.1 10.1 0.34 11.1 2.1 2.4 2 1 0 2 2 2 0 Sperm tail C-terminal domain DUF2570 PF10828.8 gi|344209959|ref|YP_004786135.1| - 2.9 7.7 8.8 1.8 8.4 6.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) Csm1_N PF18504.1 gi|344209959|ref|YP_004786135.1| - 3.4 8.1 15.7 6.1 7.3 4.6 2.2 1 1 1 2 2 2 0 Csm1 N-terminal domain APG6_N PF17675.1 gi|344209959|ref|YP_004786135.1| - 3.5 8.2 23.5 18 5.8 23.5 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region NPV_P10 PF05531.12 gi|344209959|ref|YP_004786135.1| - 3.7 8.1 5.6 32 5.1 4.5 2.5 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Ax_dynein_light PF10211.9 gi|344209959|ref|YP_004786135.1| - 4.9 7.0 17.9 3.2 7.7 13.7 1.9 1 1 1 2 2 2 0 Axonemal dynein light chain Mt_ATP-synt_B PF05405.14 gi|344209959|ref|YP_004786135.1| - 5.5 6.6 10.9 6.3 6.4 9.1 1.7 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Macoilin PF09726.9 gi|344209959|ref|YP_004786135.1| - 5.5 5.4 14.1 6.5 5.2 14.1 1.0 1 0 0 1 1 1 0 Macoilin family MctB PF11382.8 gi|344209959|ref|YP_004786135.1| - 6.7 6.3 11.1 0.62 9.7 4.2 1.9 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB CENP-H PF05837.12 gi|344209959|ref|YP_004786135.1| - 7 7.1 18.4 1.2 9.6 9.4 2.0 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Cnn_1N PF07989.11 gi|344209959|ref|YP_004786135.1| - 8 6.7 17.3 5.7 7.2 14.8 2.0 2 1 0 2 2 1 0 Centrosomin N-terminal motif 1 Spc24 PF08286.11 gi|344209959|ref|YP_004786135.1| - 8 6.8 19.3 2.5 8.4 8.4 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Phage_integrase PF00589.22 gi|344209960|ref|YP_004786136.1| - 1.6e-06 28.0 0.0 3.4e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family AAA_31 PF13614.6 gi|344209961|ref|YP_004786137.1| - 5.7e-22 78.5 0.0 9.1e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344209961|ref|YP_004786137.1| - 6.1e-16 58.6 0.0 1.3e-15 57.6 0.0 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|344209961|ref|YP_004786137.1| - 4.9e-08 32.7 0.0 2.3e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|344209961|ref|YP_004786137.1| - 5e-07 29.2 0.0 1.1e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|344209961|ref|YP_004786137.1| - 8.5e-07 28.5 0.0 0.00025 20.4 0.0 2.5 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|344209961|ref|YP_004786137.1| - 2.9e-06 27.0 0.0 5.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|344209961|ref|YP_004786137.1| - 0.00082 18.9 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|344209961|ref|YP_004786137.1| - 0.024 14.2 0.2 0.08 12.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|344209961|ref|YP_004786137.1| - 0.097 12.5 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|344209961|ref|YP_004786137.1| - 0.12 12.0 0.1 0.54 10.0 0.0 2.1 2 2 0 2 2 2 0 AAA domain DUF2999 PF11212.8 gi|344209962|ref|YP_004786138.1| - 0.13 12.5 0.0 0.53 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2999) IclR PF01614.18 gi|344209963|ref|YP_004786139.1| - 2.6e-36 124.3 0.1 6.4e-36 123.0 0.1 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344209963|ref|YP_004786139.1| - 1.6e-07 31.0 0.0 3.6e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344209963|ref|YP_004786139.1| - 9.9e-07 28.2 0.0 1.9e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|344209963|ref|YP_004786139.1| - 5.5e-05 23.1 0.0 0.00034 20.5 0.0 2.2 2 1 1 3 3 3 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|344209963|ref|YP_004786139.1| - 0.00022 21.1 0.0 0.00085 19.2 0.0 2.0 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344209963|ref|YP_004786139.1| - 0.00053 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|344209963|ref|YP_004786139.1| - 0.0022 17.9 0.0 0.019 14.9 0.0 2.4 1 1 1 2 2 2 1 MarR family HTH_27 PF13463.6 gi|344209963|ref|YP_004786139.1| - 0.0027 18.1 0.1 0.011 16.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|344209963|ref|YP_004786139.1| - 0.0035 17.3 0.1 0.013 15.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|344209963|ref|YP_004786139.1| - 0.0035 17.4 0.0 0.01 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain ANAPC2 PF08672.11 gi|344209963|ref|YP_004786139.1| - 0.0036 17.8 0.0 0.013 16.0 0.0 2.0 2 0 0 2 2 2 1 Anaphase promoting complex (APC) subunit 2 HTH_DeoR PF08220.12 gi|344209963|ref|YP_004786139.1| - 0.064 13.0 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PqqD PF05402.12 gi|344209963|ref|YP_004786139.1| - 0.071 13.4 0.1 5.2 7.5 0.0 2.6 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_10 PF04967.12 gi|344209963|ref|YP_004786139.1| - 0.093 12.6 0.0 0.58 10.0 0.0 2.3 1 1 1 2 2 2 0 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|344209963|ref|YP_004786139.1| - 0.097 12.8 0.1 0.64 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase TAF8_C PF10406.9 gi|344209963|ref|YP_004786139.1| - 0.11 13.1 0.7 4.3 8.0 0.2 2.7 2 0 0 2 2 2 0 Transcription factor TFIID complex subunit 8 C-term Rrf2 PF02082.20 gi|344209963|ref|YP_004786139.1| - 0.12 12.8 0.0 0.4 11.1 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Na_H_antiporter PF03553.14 gi|344209964|ref|YP_004786140.1| - 4.8e-55 186.9 45.9 1.2e-50 172.5 26.0 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Reticulon PF02453.17 gi|344209964|ref|YP_004786140.1| - 0.12 12.3 3.9 0.32 10.9 0.0 3.0 3 0 0 3 3 3 0 Reticulon DUF4864 PF16156.5 gi|344209965|ref|YP_004786141.1| - 8e-10 39.3 0.0 1.3e-09 38.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4864) DUF3592 PF12158.8 gi|344209967|ref|YP_004786143.1| - 9e-26 90.7 9.6 2.8e-25 89.1 9.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) DUF3318 PF11780.8 gi|344209967|ref|YP_004786143.1| - 0.017 15.0 0.0 0.84 9.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) DUF2189 PF09955.9 gi|344209967|ref|YP_004786143.1| - 0.089 13.0 2.6 0.089 13.0 0.9 1.8 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2189) Hydantoinase_B PF02538.14 gi|344209968|ref|YP_004786144.1| - 2.2e-202 673.1 2.9 2.4e-202 672.9 2.9 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|344209969|ref|YP_004786145.1| - 1.4e-98 329.7 11.2 3.3e-98 328.5 5.3 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|344209969|ref|YP_004786145.1| - 8.4e-51 172.2 1.9 4e-50 170.0 0.2 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|344209969|ref|YP_004786145.1| - 0.0026 16.4 5.7 0.026 13.1 0.4 2.6 3 0 0 3 3 3 2 MutL protein FtsA PF14450.6 gi|344209969|ref|YP_004786145.1| - 0.45 11.0 2.8 3.2 8.2 0.3 2.8 2 1 0 2 2 2 0 Cell division protein FtsA Nramp PF01566.18 gi|344209970|ref|YP_004786146.1| - 2e-97 326.4 24.4 2.5e-97 326.1 24.4 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein LPD14 PF18827.1 gi|344209970|ref|YP_004786146.1| - 0.16 12.3 2.4 37 4.6 0.1 3.7 2 2 2 4 4 4 0 Large polyvalent protein-associated domain 14 RHH_1 PF01402.21 gi|344209971|ref|YP_004786147.1| - 6e-11 41.9 1.4 9.9e-11 41.2 0.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|344209971|ref|YP_004786147.1| - 5.5e-05 23.0 0.1 0.00014 21.8 0.1 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|344209971|ref|YP_004786147.1| - 0.003 18.3 0.5 0.015 16.0 0.2 2.0 1 1 1 2 2 2 1 Rv0623-like transcription factor PUB PF09409.10 gi|344209971|ref|YP_004786147.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 PUB domain TraY PF05509.11 gi|344209971|ref|YP_004786147.1| - 0.027 14.5 0.3 0.1 12.7 0.1 1.9 2 0 0 2 2 2 0 TraY domain RHH_5 PF07878.11 gi|344209971|ref|YP_004786147.1| - 0.074 13.0 0.1 0.18 11.7 0.1 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ELFV_dehydrog PF00208.21 gi|344209972|ref|YP_004786148.1| - 7.7e-72 241.9 0.1 9.9e-72 241.6 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|344209972|ref|YP_004786148.1| - 6.6e-53 178.0 0.0 1e-52 177.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|344209972|ref|YP_004786148.1| - 0.00064 19.1 0.1 0.0013 18.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|344209972|ref|YP_004786148.1| - 0.0016 17.3 0.0 0.0022 16.8 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase IlvN PF07991.12 gi|344209972|ref|YP_004786148.1| - 0.028 14.0 0.1 0.045 13.3 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|344209972|ref|YP_004786148.1| - 0.042 13.1 0.1 0.074 12.3 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain BAT PF15915.5 gi|344209974|ref|YP_004786150.1| - 7.8e-37 126.6 9.3 7.8e-37 126.6 9.3 2.8 3 0 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|344209974|ref|YP_004786150.1| - 4.3e-26 91.8 5.0 6.1e-19 68.7 0.1 3.4 4 0 0 4 4 4 2 GAF domain HTH_10 PF04967.12 gi|344209974|ref|YP_004786150.1| - 4.3e-18 64.8 0.0 1.4e-17 63.2 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|344209974|ref|YP_004786150.1| - 2.2e-13 50.4 4.3 3.4e-09 36.9 0.7 3.7 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.6 gi|344209974|ref|YP_004786150.1| - 4.8e-13 49.6 0.2 9e-05 22.8 0.0 3.5 3 0 0 3 3 3 2 GAF domain Response_reg PF00072.24 gi|344209974|ref|YP_004786150.1| - 3.5e-10 40.0 0.1 1.7e-09 37.8 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|344209974|ref|YP_004786150.1| - 5.5e-09 36.8 1.5 0.0011 19.7 0.0 3.4 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.7 gi|344209974|ref|YP_004786150.1| - 8e-09 35.7 1.7 2.7e-05 24.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|344209974|ref|YP_004786150.1| - 8.7e-06 25.7 5.6 0.047 13.7 0.1 3.7 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|344209974|ref|YP_004786150.1| - 0.062 13.3 0.4 0.9 9.6 0.1 3.1 3 0 0 3 3 3 0 PAS domain PAS_7 PF12860.7 gi|344209974|ref|YP_004786150.1| - 0.36 11.0 7.3 0.56 10.4 0.0 4.2 4 2 0 4 4 4 0 PAS fold zf-C2HC5 PF06221.13 gi|344209975|ref|YP_004786151.1| - 0.00027 20.8 0.2 0.0003 20.7 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|344209975|ref|YP_004786151.1| - 0.002 18.1 1.4 0.0022 18.0 1.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|344209975|ref|YP_004786151.1| - 0.0083 16.2 1.0 0.0093 16.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|344209975|ref|YP_004786151.1| - 0.01 15.9 3.3 0.018 15.1 3.3 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|344209975|ref|YP_004786151.1| - 0.015 14.7 1.6 0.024 14.0 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|344209975|ref|YP_004786151.1| - 0.024 14.8 0.4 0.027 14.6 0.4 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|344209975|ref|YP_004786151.1| - 0.069 13.2 1.0 0.071 13.1 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_pol_N PF01194.17 gi|344209975|ref|YP_004786151.1| - 0.11 12.8 1.0 0.16 12.3 1.0 1.4 1 1 0 1 1 1 0 RNA polymerases N / 8 kDa subunit YhfH PF14149.6 gi|344209975|ref|YP_004786151.1| - 0.15 12.0 5.2 2.6 8.1 3.8 2.1 1 1 1 2 2 2 0 YhfH-like protein ELFV_dehydrog PF00208.21 gi|344209976|ref|YP_004786152.1| - 3.9e-71 239.6 0.1 4.8e-71 239.3 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|344209976|ref|YP_004786152.1| - 1.5e-56 189.9 0.0 2.4e-56 189.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|344209976|ref|YP_004786152.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|344209976|ref|YP_004786152.1| - 0.017 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|344209976|ref|YP_004786152.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Gp_dh_N PF00044.24 gi|344209976|ref|YP_004786152.1| - 0.18 12.2 0.0 0.51 10.7 0.0 1.9 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PAS_4 PF08448.10 gi|344209977|ref|YP_004786153.1| - 1.4e-52 176.5 15.5 3.9e-14 52.8 0.0 7.0 5 3 1 6 6 6 5 PAS fold PAS PF00989.25 gi|344209977|ref|YP_004786153.1| - 8.5e-37 125.6 4.6 5.3e-17 61.9 0.0 5.6 5 1 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|344209977|ref|YP_004786153.1| - 2.2e-31 108.2 3.7 2e-12 47.3 0.0 6.0 6 0 0 6 6 6 4 PAS domain PAS_8 PF13188.7 gi|344209977|ref|YP_004786153.1| - 3.9e-20 71.4 1.8 1.6e-06 28.0 0.0 5.8 6 0 0 6 6 5 4 PAS domain PAS_3 PF08447.12 gi|344209977|ref|YP_004786153.1| - 1.1e-19 70.4 0.4 2.3e-09 37.4 0.1 3.9 4 0 0 4 4 4 2 PAS fold GAF_2 PF13185.6 gi|344209977|ref|YP_004786153.1| - 1e-17 64.7 12.2 7e-10 39.3 0.8 5.3 6 0 0 6 6 6 2 GAF domain GAF_3 PF13492.6 gi|344209977|ref|YP_004786153.1| - 3.2e-17 63.1 0.1 1.5e-09 38.3 0.0 4.3 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.26 gi|344209977|ref|YP_004786153.1| - 1.1e-14 54.9 0.0 2.4e-14 53.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344209977|ref|YP_004786153.1| - 5.1e-13 48.9 6.4 5.2e-13 48.8 0.4 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|344209977|ref|YP_004786153.1| - 1.1e-12 48.2 0.1 4.1e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|344209977|ref|YP_004786153.1| - 6.2e-09 36.6 0.1 9.5e-07 29.5 0.0 3.6 3 0 0 3 3 3 1 GAF domain PAS_10 PF13596.6 gi|344209977|ref|YP_004786153.1| - 0.063 13.9 0.0 1.3 9.6 0.0 3.1 3 0 0 3 3 3 0 PAS domain MCU PF04678.13 gi|344209977|ref|YP_004786153.1| - 0.54 10.3 2.1 1.6 8.8 0.7 2.6 2 1 0 2 2 2 0 Mitochondrial calcium uniporter TetR_C_15 PF17918.1 gi|344209977|ref|YP_004786153.1| - 7.5 7.4 8.1 28 5.5 0.1 4.4 5 0 0 5 5 4 0 Tetracyclin repressor-like, C-terminal domain Response_reg PF00072.24 gi|344209978|ref|YP_004786154.1| - 3.7e-23 81.8 0.0 9.4e-23 80.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|344209978|ref|YP_004786154.1| - 1.8e-18 67.1 1.4 4e-18 65.9 0.1 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|344209978|ref|YP_004786154.1| - 3.4e-18 66.3 1.7 1.3e-17 64.4 0.1 2.7 3 1 0 3 3 3 1 GAF domain PAS_4 PF08448.10 gi|344209978|ref|YP_004786154.1| - 4.2e-16 59.2 0.0 8.8e-16 58.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|344209978|ref|YP_004786154.1| - 2.8e-14 52.9 1.2 2.8e-14 52.9 1.2 3.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344209978|ref|YP_004786154.1| - 1.1e-10 41.7 0.0 3.1e-10 40.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344209978|ref|YP_004786154.1| - 3.3e-10 40.0 0.0 1e-09 38.4 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|344209978|ref|YP_004786154.1| - 1.5e-09 38.6 0.0 2.1e-08 34.8 0.0 2.6 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|344209978|ref|YP_004786154.1| - 1.5e-07 31.8 0.0 5.6e-07 30.0 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|344209978|ref|YP_004786154.1| - 1.5e-06 28.4 0.0 4.8e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344209978|ref|YP_004786154.1| - 6.7e-05 22.8 0.0 0.00028 20.8 0.0 2.1 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|344209978|ref|YP_004786154.1| - 0.023 14.6 0.1 0.023 14.6 0.1 2.7 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|344209978|ref|YP_004786154.1| - 0.026 14.4 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TBCA PF02970.16 gi|344209978|ref|YP_004786154.1| - 0.094 13.1 0.3 0.33 11.3 0.3 1.9 1 0 0 1 1 1 0 Tubulin binding cofactor A Abhydrolase_6 PF12697.7 gi|344209979|ref|YP_004786155.1| - 7.8e-20 72.4 4.1 9.4e-20 72.2 4.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344209979|ref|YP_004786155.1| - 1.3e-09 38.1 0.0 2.7e-09 37.0 0.0 1.5 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344209979|ref|YP_004786155.1| - 0.0013 18.0 0.0 0.0018 17.6 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|344209979|ref|YP_004786155.1| - 0.0045 16.8 0.0 0.0087 15.8 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|344209979|ref|YP_004786155.1| - 0.15 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Peripla_BP_2 PF01497.18 gi|344209980|ref|YP_004786156.1| - 4.9e-12 45.9 0.0 8.5e-12 45.1 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein IMPDH PF00478.25 gi|344209981|ref|YP_004786157.1| - 4e-117 391.1 7.3 4.6e-117 390.9 7.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|344209981|ref|YP_004786157.1| - 9.6e-09 35.1 13.6 0.00026 20.5 0.3 2.4 1 1 1 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|344209981|ref|YP_004786157.1| - 7.6e-07 28.5 10.1 1.6e-06 27.4 10.1 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|344209981|ref|YP_004786157.1| - 5.5e-06 26.0 1.8 0.00019 21.0 0.1 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|344209981|ref|YP_004786157.1| - 0.0016 17.7 8.2 0.0016 17.6 3.9 2.7 3 0 0 3 3 3 1 Conserved region in glutamate synthase TMP-TENI PF02581.17 gi|344209981|ref|YP_004786157.1| - 0.009 15.4 5.7 0.018 14.4 5.3 1.7 1 1 1 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|344209981|ref|YP_004786157.1| - 0.011 14.9 0.7 0.011 14.9 0.7 1.7 3 0 0 3 3 3 0 Dihydroorotate dehydrogenase Aldolase PF01081.19 gi|344209981|ref|YP_004786157.1| - 0.062 12.7 3.1 0.14 11.5 1.0 2.2 1 1 1 2 2 2 0 KDPG and KHG aldolase DUF934 PF06073.12 gi|344209982|ref|YP_004786158.1| - 0.015 15.2 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF934) DUF969 PF06149.12 gi|344209982|ref|YP_004786158.1| - 0.026 14.0 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF969) Molybdopterin PF00384.22 gi|344209983|ref|YP_004786159.1| - 1.6e-80 271.2 0.0 1.9e-80 270.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344209983|ref|YP_004786159.1| - 3.6e-32 110.7 0.0 7.6e-32 109.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|344209983|ref|YP_004786159.1| - 1.1e-05 25.3 4.8 1.4e-05 25.0 3.1 2.0 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TPP_enzyme_M PF00205.22 gi|344209983|ref|YP_004786159.1| - 0.028 14.2 0.3 5 6.9 0.0 2.9 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain zf-ribbon_3 PF13248.6 gi|344209983|ref|YP_004786159.1| - 0.043 13.2 0.3 0.15 11.6 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain NosD PF05048.13 gi|344209984|ref|YP_004786160.1| - 3.3e-23 82.2 4.7 1.3e-22 80.3 1.3 2.1 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|344209984|ref|YP_004786160.1| - 1.4e-14 54.3 12.7 7.7e-11 42.1 2.6 3.0 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.12 gi|344209984|ref|YP_004786160.1| - 1.7e-13 51.1 0.0 3e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 NosL DUF1565 PF07602.11 gi|344209984|ref|YP_004786160.1| - 0.00043 19.7 13.6 0.076 12.3 13.6 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) ABC_tran PF00005.27 gi|344209985|ref|YP_004786161.1| - 6.7e-28 97.9 0.0 9e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209985|ref|YP_004786161.1| - 1.6e-17 64.3 0.1 4.4e-09 36.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209985|ref|YP_004786161.1| - 2.5e-05 23.8 0.0 0.046 13.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344209985|ref|YP_004786161.1| - 7.7e-05 22.6 0.0 0.0029 17.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344209985|ref|YP_004786161.1| - 0.00053 19.7 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344209985|ref|YP_004786161.1| - 0.00094 19.7 0.0 0.0013 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344209985|ref|YP_004786161.1| - 0.012 15.5 0.1 0.026 14.4 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|344209985|ref|YP_004786161.1| - 0.013 15.6 0.0 0.019 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|344209985|ref|YP_004786161.1| - 0.015 15.7 0.0 0.026 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|344209985|ref|YP_004786161.1| - 0.033 13.0 0.0 0.045 12.5 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_13 PF13166.6 gi|344209985|ref|YP_004786161.1| - 0.046 12.4 0.0 2.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344209985|ref|YP_004786161.1| - 0.19 11.8 0.1 0.37 10.9 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|344209985|ref|YP_004786161.1| - 0.23 11.0 0.3 0.42 10.2 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_2 PF12679.7 gi|344209986|ref|YP_004786162.1| - 2.5e-07 30.3 21.1 1.2e-05 24.8 21.1 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|344209986|ref|YP_004786162.1| - 0.0026 17.2 7.2 0.0026 17.2 7.2 2.2 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|344209986|ref|YP_004786162.1| - 0.18 10.9 16.2 0.038 13.1 12.7 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein HrcA_DNA-bdg PF03444.15 gi|344209986|ref|YP_004786162.1| - 0.2 11.3 0.2 0.43 10.3 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 gi|344209987|ref|YP_004786163.1| - 4.4e-15 55.5 3.2 4.1e-09 36.4 1.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|344209987|ref|YP_004786163.1| - 8.9e-13 47.6 0.0 2.5e-08 33.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344209987|ref|YP_004786163.1| - 1.1e-11 44.4 0.1 5.5e-07 29.4 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344209987|ref|YP_004786163.1| - 2.2e-08 33.8 4.9 5.2e-06 26.3 0.7 3.0 3 2 0 3 3 3 2 MarR family TrmB PF01978.19 gi|344209987|ref|YP_004786163.1| - 2.5e-08 33.7 0.0 4.2e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|344209987|ref|YP_004786163.1| - 2.4e-06 27.4 0.1 2.6e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|344209987|ref|YP_004786163.1| - 5.5e-05 23.4 0.1 0.0047 17.3 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.12 gi|344209987|ref|YP_004786163.1| - 5.6e-05 22.9 0.0 0.22 11.3 0.0 2.7 2 1 0 2 2 2 2 HTH DNA binding domain MarR PF01047.22 gi|344209987|ref|YP_004786163.1| - 7.2e-05 22.6 0.0 0.00035 20.4 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|344209987|ref|YP_004786163.1| - 9.9e-05 22.3 0.4 0.00021 21.2 0.2 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344209987|ref|YP_004786163.1| - 0.00019 21.2 1.2 0.0027 17.5 0.8 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|344209987|ref|YP_004786163.1| - 0.00021 21.4 0.0 0.15 12.3 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|344209987|ref|YP_004786163.1| - 0.001 19.2 0.0 0.17 12.1 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|344209987|ref|YP_004786163.1| - 0.005 16.5 0.0 0.19 11.3 0.0 2.4 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_CodY PF08222.11 gi|344209987|ref|YP_004786163.1| - 0.0067 16.0 0.0 0.027 14.0 0.0 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_DeoR PF08220.12 gi|344209987|ref|YP_004786163.1| - 0.0094 15.7 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain AbiEi_4 PF13338.6 gi|344209987|ref|YP_004786163.1| - 0.017 15.3 0.5 8.4 6.6 0.1 2.6 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Phage_CI_repr PF07022.13 gi|344209987|ref|YP_004786163.1| - 0.019 15.1 0.0 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain FaeA PF04703.12 gi|344209987|ref|YP_004786163.1| - 0.021 15.2 0.1 4.5 7.7 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein DprA_WH PF17782.1 gi|344209987|ref|YP_004786163.1| - 0.052 13.7 6.4 0.41 10.8 1.0 3.4 3 1 0 3 3 3 0 DprA winged helix domain Glyco_transf_56 PF07429.11 gi|344209987|ref|YP_004786163.1| - 0.059 12.5 0.0 0.07 12.2 0.0 1.0 1 0 0 1 1 1 0 4-alpha-L-fucosyltransferase glycosyl transferase group 56 HTH_27 PF13463.6 gi|344209987|ref|YP_004786163.1| - 0.062 13.8 0.3 3.3 8.3 0.2 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_31 PF13560.6 gi|344209987|ref|YP_004786163.1| - 3.8 7.9 8.9 36 4.8 8.8 2.7 1 1 0 1 1 1 0 Helix-turn-helix domain NosL PF05573.12 gi|344209988|ref|YP_004786164.1| - 2e-43 147.9 0.1 2.4e-43 147.6 0.1 1.1 1 0 0 1 1 1 1 NosL RRM_1 PF00076.22 gi|344209988|ref|YP_004786164.1| - 0.0077 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VATC PF18716.1 gi|344209988|ref|YP_004786164.1| - 0.0091 15.8 3.5 0.088 12.7 1.4 2.3 2 0 0 2 2 2 1 Vms1-associating treble clef domain LysE PF01810.18 gi|344209989|ref|YP_004786165.1| - 0.096 12.1 4.9 0.12 11.8 4.9 1.2 1 0 0 1 1 1 0 LysE type translocator 7TMR-DISM_7TM PF07695.11 gi|344209989|ref|YP_004786165.1| - 0.36 10.7 7.2 0.4 10.5 7.2 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling MARVEL PF01284.23 gi|344209989|ref|YP_004786165.1| - 1.5 8.9 6.2 6.1 6.9 6.2 1.8 1 1 0 1 1 1 0 Membrane-associating domain DUF1772 PF08592.11 gi|344209989|ref|YP_004786165.1| - 2.6 8.4 6.8 5.2 7.4 6.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Usp PF00582.26 gi|344209990|ref|YP_004786166.1| - 3.8e-30 105.2 2.2 4.2e-30 105.1 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|344209990|ref|YP_004786166.1| - 0.00046 20.2 0.0 0.00057 19.9 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase Pyridox_ox_2 PF12900.7 gi|344209991|ref|YP_004786167.1| - 1.3e-17 64.2 0.0 1.4e-17 64.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344209991|ref|YP_004786167.1| - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF2267 PF10025.9 gi|344209992|ref|YP_004786168.1| - 3e-36 124.4 0.7 4.1e-36 123.9 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Usp PF00582.26 gi|344209993|ref|YP_004786169.1| - 6.4e-67 224.4 4.4 4.2e-33 114.8 0.9 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.10 gi|344209993|ref|YP_004786169.1| - 0.0012 18.7 0.2 0.61 10.1 0.0 2.6 2 0 0 2 2 2 2 FR47-like protein AP_endonuc_2 PF01261.24 gi|344209993|ref|YP_004786169.1| - 0.0079 15.7 3.1 0.24 10.8 0.1 2.5 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Pyridox_ox_2 PF12900.7 gi|344209994|ref|YP_004786170.1| - 1.3e-17 64.1 0.0 1.5e-17 63.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344209994|ref|YP_004786170.1| - 0.0058 16.8 0.0 0.0082 16.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase E1-E2_ATPase PF00122.20 gi|344209995|ref|YP_004786171.1| - 2.8e-56 189.9 2.7 2.8e-56 189.9 2.7 2.6 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|344209995|ref|YP_004786171.1| - 1.4e-38 132.4 1.1 1.4e-38 132.4 1.1 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|344209995|ref|YP_004786171.1| - 4.1e-28 99.1 3.9 8.7e-28 98.0 3.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|344209995|ref|YP_004786171.1| - 4.8e-21 74.6 0.0 3.2e-20 72.0 0.0 2.1 2 0 0 2 2 2 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|344209995|ref|YP_004786171.1| - 1.5e-13 50.2 0.0 3e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|344209995|ref|YP_004786171.1| - 1.1e-05 25.3 0.8 9.2e-05 22.3 0.6 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344209995|ref|YP_004786171.1| - 0.0007 20.0 0.3 0.0014 19.1 0.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 gi|344209996|ref|YP_004786172.1| - 4e-58 197.0 1.8 5.1e-58 196.6 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344209996|ref|YP_004786172.1| - 1e-26 93.3 1.9 6.5e-21 74.7 0.4 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|344209996|ref|YP_004786172.1| - 6.3e-13 48.9 0.0 3.4e-12 46.6 0.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|344209996|ref|YP_004786172.1| - 1.6e-08 34.2 0.0 0.0035 16.6 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|344209996|ref|YP_004786172.1| - 1.1e-06 28.8 0.9 0.012 15.9 0.0 3.5 4 0 0 4 4 4 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|344209996|ref|YP_004786172.1| - 6.6e-06 25.5 10.8 0.22 10.6 0.4 4.1 1 1 3 4 4 4 3 FAD binding domain HI0933_like PF03486.14 gi|344209996|ref|YP_004786172.1| - 2.3e-05 23.3 0.1 0.17 10.6 0.0 3.6 3 1 1 4 4 4 2 HI0933-like protein Amino_oxidase PF01593.24 gi|344209996|ref|YP_004786172.1| - 0.00015 21.2 0.2 1.8 7.8 0.0 3.0 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase Thi4 PF01946.17 gi|344209996|ref|YP_004786172.1| - 0.025 13.8 0.1 0.35 10.1 0.0 2.6 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.12 gi|344209996|ref|YP_004786172.1| - 0.028 13.5 0.3 0.48 9.4 0.0 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|344209996|ref|YP_004786172.1| - 0.086 12.4 0.1 6.1 6.4 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|344209996|ref|YP_004786172.1| - 0.099 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TauE PF01925.19 gi|344209997|ref|YP_004786173.1| - 7.1e-18 65.1 37.9 8.9e-18 64.8 37.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DrsE PF02635.15 gi|344209998|ref|YP_004786174.1| - 2.9e-09 37.3 0.0 3.3e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Thioredoxin PF00085.20 gi|344209999|ref|YP_004786175.1| - 3.9e-27 94.2 0.0 4.4e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344209999|ref|YP_004786175.1| - 8.8e-11 42.2 0.1 3.9e-09 36.9 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|344209999|ref|YP_004786175.1| - 8e-07 29.1 0.0 9.8e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|344209999|ref|YP_004786175.1| - 1.1e-05 25.4 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 gi|344209999|ref|YP_004786175.1| - 2.3e-05 24.2 0.3 3.8e-05 23.5 0.1 1.5 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.6 gi|344209999|ref|YP_004786175.1| - 7.1e-05 23.1 0.0 0.44 10.9 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|344209999|ref|YP_004786175.1| - 9.4e-05 22.2 0.0 0.00012 21.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|344209999|ref|YP_004786175.1| - 0.0011 19.2 0.0 0.0023 18.0 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like HyaE PF07449.11 gi|344209999|ref|YP_004786175.1| - 0.0018 18.2 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|344209999|ref|YP_004786175.1| - 0.0027 17.1 0.0 0.0033 16.8 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|344209999|ref|YP_004786175.1| - 0.0032 17.8 0.0 0.0043 17.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|344209999|ref|YP_004786175.1| - 0.0056 16.4 0.0 0.013 15.2 0.0 1.6 1 1 1 2 2 2 1 Thioredoxin Glutaredoxin PF00462.24 gi|344209999|ref|YP_004786175.1| - 0.0069 16.6 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.10 gi|344209999|ref|YP_004786175.1| - 0.012 15.3 0.1 1.3 8.7 0.1 2.0 1 1 1 2 2 2 0 Redoxin AhpC-TSA PF00578.21 gi|344209999|ref|YP_004786175.1| - 0.013 15.4 0.0 0.55 10.2 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_4 PF13462.6 gi|344209999|ref|YP_004786175.1| - 0.065 13.4 0.0 0.14 12.3 0.0 1.5 1 1 1 2 2 2 0 Thioredoxin TrbC_Ftype PF09673.10 gi|344209999|ref|YP_004786175.1| - 0.17 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein TrmB PF01978.19 gi|344210000|ref|YP_004786176.1| - 3.8e-18 65.1 0.0 5.2e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344210000|ref|YP_004786176.1| - 1.5e-07 31.1 0.1 3e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|344210000|ref|YP_004786176.1| - 1.8e-06 27.8 0.0 3.7e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344210000|ref|YP_004786176.1| - 4.6e-06 26.5 0.0 8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain Penicillinase_R PF03965.16 gi|344210000|ref|YP_004786176.1| - 8.6e-05 22.9 0.0 0.00011 22.6 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.7 gi|344210000|ref|YP_004786176.1| - 0.00012 21.9 0.0 0.00038 20.3 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|344210000|ref|YP_004786176.1| - 0.0003 20.8 0.2 0.00067 19.7 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210000|ref|YP_004786176.1| - 0.0009 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.13 gi|344210000|ref|YP_004786176.1| - 0.0011 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain UMPH-1 PF05822.12 gi|344210000|ref|YP_004786176.1| - 0.0028 17.2 0.1 0.0046 16.5 0.1 1.3 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_29 PF13551.6 gi|344210000|ref|YP_004786176.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix GntR PF00392.21 gi|344210000|ref|YP_004786176.1| - 0.016 14.8 0.1 0.037 13.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|344210000|ref|YP_004786176.1| - 0.018 15.1 0.0 0.041 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|344210000|ref|YP_004786176.1| - 0.03 14.0 0.1 0.11 12.2 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|344210000|ref|YP_004786176.1| - 0.037 14.0 0.1 0.073 13.1 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain SMC_ScpB PF04079.16 gi|344210000|ref|YP_004786176.1| - 0.047 13.3 0.4 1.2 8.7 0.0 2.4 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_23 PF13384.6 gi|344210000|ref|YP_004786176.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 gi|344210000|ref|YP_004786176.1| - 0.078 13.3 0.0 0.17 12.3 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator Dimerisation PF08100.11 gi|344210000|ref|YP_004786176.1| - 0.085 12.9 0.0 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 Dimerisation domain HTH_27 PF13463.6 gi|344210000|ref|YP_004786176.1| - 0.15 12.6 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sulf_transp PF04143.14 gi|344210001|ref|YP_004786177.1| - 1e-07 31.8 9.0 1e-07 31.8 9.0 2.1 1 1 1 2 2 2 2 Sulphur transport Sulf_transp PF04143.14 gi|344210002|ref|YP_004786178.1| - 7.3e-14 52.0 11.9 1.1e-13 51.5 11.9 1.2 1 0 0 1 1 1 1 Sulphur transport Trp_oprn_chp PF09534.10 gi|344210002|ref|YP_004786178.1| - 0.026 14.3 0.7 0.026 14.3 0.7 1.9 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4282 PF14110.6 gi|344210002|ref|YP_004786178.1| - 1.8 9.3 8.0 0.63 10.8 3.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) Lactamase_B PF00753.27 gi|344210003|ref|YP_004786179.1| - 1.3e-12 48.1 4.5 2.4e-12 47.3 4.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|344210003|ref|YP_004786179.1| - 3.8e-10 40.2 0.0 6.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|344210003|ref|YP_004786179.1| - 0.00066 19.3 0.1 0.0013 18.3 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TusA PF01206.17 gi|344210004|ref|YP_004786180.1| - 1.4e-21 76.1 0.0 1.6e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|344210004|ref|YP_004786180.1| - 0.029 14.2 0.1 0.057 13.3 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|344210005|ref|YP_004786181.1| - 7.2e-54 181.9 0.7 8.7e-54 181.6 0.7 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|344210005|ref|YP_004786181.1| - 4.7e-07 30.2 0.0 2.1e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 DsrE/DsrF-like family aGPT-Pplase1 PF18723.1 gi|344210005|ref|YP_004786181.1| - 0.04 13.3 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 DUF1641 PF07849.11 gi|344210006|ref|YP_004786182.1| - 6.4e-16 58.0 0.3 1.5e-15 56.8 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|344210007|ref|YP_004786183.1| - 2.1e-22 79.7 0.0 1.1e-21 77.4 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|344210007|ref|YP_004786183.1| - 0.002 18.1 0.2 0.24 11.4 0.0 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pribosyltran PF00156.27 gi|344210007|ref|YP_004786183.1| - 0.0076 15.8 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pyr_redox PF00070.27 gi|344210007|ref|YP_004786183.1| - 0.0095 16.5 0.1 3.9 8.1 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.17 gi|344210008|ref|YP_004786184.1| - 9.7e-18 63.8 0.0 1.1e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DSHCT PF08148.12 gi|344210008|ref|YP_004786184.1| - 0.017 14.8 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 DSHCT (NUC185) domain Methyltransf_31 PF13847.6 gi|344210009|ref|YP_004786185.1| - 2.7e-12 46.7 0.0 3.2e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210009|ref|YP_004786185.1| - 7e-12 45.9 0.0 9.9e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210009|ref|YP_004786185.1| - 2e-11 44.4 0.0 2.7e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210009|ref|YP_004786185.1| - 6.8e-09 35.4 0.0 8.1e-09 35.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|344210009|ref|YP_004786185.1| - 8.1e-08 32.9 0.0 1e-07 32.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|344210009|ref|YP_004786185.1| - 7.5e-07 29.1 0.0 9.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|344210009|ref|YP_004786185.1| - 1.5e-05 24.9 0.0 1.9e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344210009|ref|YP_004786185.1| - 1.7e-05 24.4 0.0 2.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|344210009|ref|YP_004786185.1| - 0.00017 21.1 0.0 0.00022 20.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|344210009|ref|YP_004786185.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.17 gi|344210009|ref|YP_004786185.1| - 0.00042 19.5 0.0 0.0018 17.4 0.0 1.8 2 0 0 2 2 2 1 Fibrillarin DUF938 PF06080.12 gi|344210009|ref|YP_004786185.1| - 0.0014 18.4 0.0 0.0026 17.6 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|344210009|ref|YP_004786185.1| - 0.0036 16.8 0.0 0.005 16.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|344210009|ref|YP_004786185.1| - 0.054 12.8 0.0 0.069 12.4 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_32 PF13679.6 gi|344210009|ref|YP_004786185.1| - 0.078 13.0 0.0 0.094 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|344210009|ref|YP_004786185.1| - 0.081 12.9 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|344210009|ref|YP_004786185.1| - 0.088 12.6 0.0 0.45 10.3 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.20 gi|344210009|ref|YP_004786185.1| - 0.1 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2892 PF11127.8 gi|344210010|ref|YP_004786186.1| - 1.3e-16 60.3 7.7 1.6e-16 60.0 7.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Chlorosome_CsmC PF11098.8 gi|344210010|ref|YP_004786186.1| - 0.014 15.4 2.8 0.015 15.3 2.8 1.0 1 0 0 1 1 1 0 Chlorosome envelope protein C MSP1b PF03429.13 gi|344210010|ref|YP_004786186.1| - 0.34 8.9 1.0 0.37 8.8 1.0 1.0 1 0 0 1 1 1 0 Major surface protein 1B Peptidase_M20 PF01546.28 gi|344210011|ref|YP_004786187.1| - 3.3e-40 138.0 0.2 5e-40 137.4 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344210011|ref|YP_004786187.1| - 2.3e-18 66.1 0.0 4.4e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|344210011|ref|YP_004786187.1| - 5.8e-10 39.2 0.1 1.1e-07 31.8 0.1 2.1 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M42 PF05343.14 gi|344210011|ref|YP_004786187.1| - 0.005 15.9 0.1 2.8 6.9 0.0 2.3 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase Thioredoxin PF00085.20 gi|344210012|ref|YP_004786188.1| - 2.1e-27 95.1 0.0 2.7e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344210012|ref|YP_004786188.1| - 5.7e-12 46.1 0.1 1.4e-10 41.6 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|344210012|ref|YP_004786188.1| - 4.1e-06 26.7 0.0 6.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|344210012|ref|YP_004786188.1| - 4.2e-05 23.6 0.0 8.3e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|344210012|ref|YP_004786188.1| - 4.9e-05 23.3 0.0 6.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|344210012|ref|YP_004786188.1| - 6e-05 23.3 0.0 0.072 13.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like DSBA PF01323.20 gi|344210012|ref|YP_004786188.1| - 0.00011 22.1 0.2 0.00023 21.0 0.0 1.6 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_9 PF14595.6 gi|344210012|ref|YP_004786188.1| - 0.00013 21.7 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|344210012|ref|YP_004786188.1| - 0.0002 21.3 0.1 0.00035 20.5 0.0 1.5 2 0 0 2 2 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.14 gi|344210012|ref|YP_004786188.1| - 0.00072 19.9 0.0 0.0011 19.3 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|344210012|ref|YP_004786188.1| - 0.004 16.5 0.0 0.005 16.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|344210012|ref|YP_004786188.1| - 0.012 15.6 0.0 0.086 12.8 0.0 2.0 1 1 0 1 1 1 0 AhpC/TSA family Glutaredoxin PF00462.24 gi|344210012|ref|YP_004786188.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin Redoxin PF08534.10 gi|344210012|ref|YP_004786188.1| - 0.029 14.1 0.1 0.41 10.3 0.1 2.0 1 1 1 2 2 2 0 Redoxin Thioredoxin_5 PF13743.6 gi|344210012|ref|YP_004786188.1| - 0.042 13.5 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin DUF953 PF06110.11 gi|344210012|ref|YP_004786188.1| - 0.056 13.1 0.4 0.54 9.9 0.4 2.1 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) KaiB PF07689.12 gi|344210012|ref|YP_004786188.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 KaiB domain DUF302 PF03625.14 gi|344210013|ref|YP_004786189.1| - 6.4e-15 54.8 0.0 1e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|344210014|ref|YP_004786190.1| - 1e-16 61.4 0.0 1.7e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210014|ref|YP_004786190.1| - 4.3e-15 56.2 0.0 1e-14 55.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210014|ref|YP_004786190.1| - 5.4e-08 32.8 0.0 1.3e-07 31.5 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210014|ref|YP_004786190.1| - 4.6e-06 26.1 0.0 6e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|344210014|ref|YP_004786190.1| - 4e-05 22.8 0.0 6.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_23 PF13489.6 gi|344210014|ref|YP_004786190.1| - 9.3e-05 22.3 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210014|ref|YP_004786190.1| - 0.0032 18.2 0.0 0.0068 17.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|344210014|ref|YP_004786190.1| - 0.0092 16.1 0.0 0.016 15.3 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|344210014|ref|YP_004786190.1| - 0.073 12.1 0.0 0.086 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|344210014|ref|YP_004786190.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase UreF PF01730.16 gi|344210015|ref|YP_004786191.1| - 3.2e-29 102.2 8.0 4.5e-29 101.7 8.0 1.2 1 0 0 1 1 1 1 UreF UreE_N PF02814.15 gi|344210016|ref|YP_004786192.1| - 3.5e-11 42.5 2.2 3.5e-11 42.5 2.2 1.8 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.12 gi|344210016|ref|YP_004786192.1| - 1.7e-05 25.2 0.6 3.1e-05 24.4 0.6 1.4 1 0 0 1 1 1 1 UreE urease accessory protein, C-terminal domain UreD PF01774.17 gi|344210017|ref|YP_004786193.1| - 3e-47 161.3 0.7 3.7e-47 161.0 0.7 1.1 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.19 gi|344210018|ref|YP_004786194.1| - 1.1e-31 109.8 0.0 1.3e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|344210018|ref|YP_004786194.1| - 5.2e-09 36.1 0.0 8.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|344210018|ref|YP_004786194.1| - 4.7e-07 29.1 1.0 2.1e-06 26.9 1.0 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|344210018|ref|YP_004786194.1| - 0.0022 18.5 0.0 0.0022 18.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|344210018|ref|YP_004786194.1| - 0.0026 17.7 0.1 1.4 8.8 0.0 2.5 3 0 0 3 3 3 2 RsgA GTPase AAA_18 PF13238.6 gi|344210018|ref|YP_004786194.1| - 0.0079 16.7 0.0 0.012 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210018|ref|YP_004786194.1| - 0.012 15.4 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|344210018|ref|YP_004786194.1| - 0.031 14.2 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 NTPase TrwB_AAD_bind PF10412.9 gi|344210018|ref|YP_004786194.1| - 0.049 12.5 0.0 0.066 12.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain LpxK PF02606.14 gi|344210018|ref|YP_004786194.1| - 0.051 12.7 0.1 0.088 11.9 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_16 PF13191.6 gi|344210018|ref|YP_004786194.1| - 0.081 13.3 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_26 PF13500.6 gi|344210018|ref|YP_004786194.1| - 0.089 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|344210018|ref|YP_004786194.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|344210018|ref|YP_004786194.1| - 0.13 12.2 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.14 gi|344210018|ref|YP_004786194.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain T2SSE PF00437.20 gi|344210018|ref|YP_004786194.1| - 0.19 10.7 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Urease_gamma PF00547.18 gi|344210019|ref|YP_004786195.1| - 4.8e-42 142.3 0.0 5.5e-42 142.1 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit Amidohydro_1 PF01979.20 gi|344210020|ref|YP_004786196.1| - 1.8e-64 218.3 0.3 2.3e-64 217.9 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|344210020|ref|YP_004786196.1| - 1.9e-49 167.0 2.7 2.3e-49 166.7 1.5 1.8 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 gi|344210020|ref|YP_004786196.1| - 3.9e-10 39.8 3.6 3.1e-07 30.2 0.2 2.6 1 1 0 2 2 2 2 Amidohydrolase family Urease_beta PF00699.20 gi|344210021|ref|YP_004786197.1| - 7.5e-45 151.0 0.1 1e-44 150.5 0.1 1.2 1 0 0 1 1 1 1 Urease beta subunit Peripla_BP_6 PF13458.6 gi|344210022|ref|YP_004786198.1| - 6e-68 230.0 0.6 7.4e-68 229.7 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344210022|ref|YP_004786198.1| - 3.3e-66 223.8 0.1 4.1e-66 223.4 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|344210022|ref|YP_004786198.1| - 0.0047 16.7 4.1 0.0093 15.8 4.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|344210023|ref|YP_004786199.1| - 5.9e-36 124.0 35.6 8.9e-36 123.4 35.6 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2613 PF11021.8 gi|344210023|ref|YP_004786199.1| - 0.95 9.6 0.0 0.95 9.6 0.0 5.4 6 1 1 7 7 7 0 Protein of unknown function (DUF2613) BPD_transp_2 PF02653.16 gi|344210024|ref|YP_004786200.1| - 8.2e-33 113.7 39.6 8.2e-33 113.7 39.6 1.4 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344210025|ref|YP_004786201.1| - 4.1e-31 108.3 0.0 6e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210025|ref|YP_004786201.1| - 7.2e-09 35.9 1.9 0.0011 18.9 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210025|ref|YP_004786201.1| - 7.9e-07 28.7 0.3 0.00034 20.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|344210025|ref|YP_004786201.1| - 2.6e-05 24.8 0.1 4.2e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|344210025|ref|YP_004786201.1| - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344210025|ref|YP_004786201.1| - 0.00024 21.1 0.0 0.00051 20.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|344210025|ref|YP_004786201.1| - 0.00053 19.7 0.0 0.00098 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 gi|344210025|ref|YP_004786201.1| - 0.0039 17.1 0.2 0.0088 15.9 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.6 gi|344210025|ref|YP_004786201.1| - 0.0053 17.2 0.1 0.01 16.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|344210025|ref|YP_004786201.1| - 0.0057 16.7 0.0 0.026 14.6 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|344210025|ref|YP_004786201.1| - 0.0061 16.3 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|344210025|ref|YP_004786201.1| - 0.0064 16.2 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344210025|ref|YP_004786201.1| - 0.0066 16.7 0.1 0.019 15.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|344210025|ref|YP_004786201.1| - 0.019 14.5 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|344210025|ref|YP_004786201.1| - 0.22 11.8 1.7 2.6 8.3 0.1 2.5 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|344210026|ref|YP_004786202.1| - 1.3e-34 119.7 0.0 2.2e-34 118.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210026|ref|YP_004786202.1| - 3.1e-08 33.8 0.6 0.0017 18.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344210026|ref|YP_004786202.1| - 9.6e-05 22.0 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344210026|ref|YP_004786202.1| - 0.0056 17.1 0.0 0.0076 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344210026|ref|YP_004786202.1| - 0.0086 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|344210026|ref|YP_004786202.1| - 0.0091 16.3 0.4 0.029 14.6 0.4 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|344210026|ref|YP_004786202.1| - 0.013 14.7 0.2 0.03 13.5 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|344210026|ref|YP_004786202.1| - 0.021 15.2 0.2 0.036 14.5 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|344210026|ref|YP_004786202.1| - 0.022 14.7 1.1 0.05 13.5 0.2 2.0 2 1 1 3 3 3 0 NTPase NACHT PF05729.12 gi|344210026|ref|YP_004786202.1| - 0.025 14.5 0.3 0.047 13.6 0.3 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|344210026|ref|YP_004786202.1| - 0.065 12.6 0.1 5.6 6.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|344210026|ref|YP_004786202.1| - 0.091 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 gi|344210026|ref|YP_004786202.1| - 0.096 12.7 0.0 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|344210026|ref|YP_004786202.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344210026|ref|YP_004786202.1| - 0.14 12.0 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|344210026|ref|YP_004786202.1| - 0.15 12.2 0.3 0.33 11.1 0.2 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|344210026|ref|YP_004786202.1| - 0.17 11.3 0.5 0.62 9.5 0.4 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DLIC PF05783.11 gi|344210026|ref|YP_004786202.1| - 0.18 10.6 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|344210026|ref|YP_004786202.1| - 0.33 10.6 2.0 0.28 10.9 0.6 1.8 2 1 0 2 2 2 0 AAA domain SNF PF00209.18 gi|344210027|ref|YP_004786203.1| - 1.3e-46 159.4 28.0 4.5e-26 91.6 13.0 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family MaoC_dehydratas PF01575.19 gi|344210028|ref|YP_004786204.1| - 8.5e-17 60.9 0.0 1.1e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344210028|ref|YP_004786204.1| - 6e-08 32.9 0.0 1.9e-07 31.3 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase COE1_HLH PF16423.5 gi|344210028|ref|YP_004786204.1| - 0.097 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Transcription factor COE1 helix-loop-helix domain Creatininase PF02633.14 gi|344210029|ref|YP_004786205.1| - 5.1e-63 212.8 0.4 5.7e-63 212.6 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF393 PF04134.12 gi|344210030|ref|YP_004786206.1| - 0.0019 19.5 0.0 0.002 19.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 TraF PF13728.6 gi|344210030|ref|YP_004786206.1| - 0.067 13.0 0.0 0.095 12.5 0.0 1.3 1 1 0 1 1 1 0 F plasmid transfer operon protein SHOCT PF09851.9 gi|344210032|ref|YP_004786208.1| - 2.9e-07 30.0 0.1 4.7e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|344210032|ref|YP_004786208.1| - 4.2e-05 23.5 1.1 7.3e-05 22.7 1.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Sulfate_transp PF00916.20 gi|344210032|ref|YP_004786208.1| - 0.016 13.9 0.0 0.02 13.6 0.0 1.1 1 0 0 1 1 1 0 Sulfate permease family DUF5368 PF17336.2 gi|344210034|ref|YP_004786210.1| - 0.12 12.5 4.7 0.054 13.7 1.6 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5368) FtsK_gamma PF09397.10 gi|344210034|ref|YP_004786210.1| - 0.14 12.0 0.0 1.1 9.1 0.0 2.3 3 0 0 3 3 3 0 Ftsk gamma domain DUF3267 PF11667.8 gi|344210034|ref|YP_004786210.1| - 2.9 8.2 5.3 2.2 8.6 1.5 2.5 2 1 1 3 3 3 0 Putative zincin peptidase PQQ_2 PF13360.6 gi|344210035|ref|YP_004786211.1| - 1.1e-33 116.8 29.0 9.5e-22 77.7 8.4 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|344210035|ref|YP_004786211.1| - 4.1e-13 49.4 39.1 0.015 15.8 0.8 8.0 7 1 0 7 7 7 6 PQQ-like domain PQQ PF01011.21 gi|344210035|ref|YP_004786211.1| - 2.7e-06 27.1 2.4 6.7 6.8 0.1 6.1 5 0 0 5 5 5 3 PQQ enzyme repeat MTH865 PF07747.11 gi|344210037|ref|YP_004786213.1| - 1.7e-24 85.4 0.1 1.9e-24 85.2 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HMA PF00403.26 gi|344210038|ref|YP_004786214.1| - 1.1e-16 61.0 0.4 1.2e-16 60.9 0.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain BOFC_N PF08977.10 gi|344210038|ref|YP_004786214.1| - 0.13 12.3 0.1 0.89 9.6 0.0 1.9 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal Usp PF00582.26 gi|344210039|ref|YP_004786215.1| - 1.3e-26 93.8 1.5 1.4e-26 93.7 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|344210039|ref|YP_004786215.1| - 0.014 15.4 0.1 0.025 14.6 0.1 1.4 1 1 0 1 1 1 0 DNA photolyase Sulfatase PF00884.23 gi|344210040|ref|YP_004786216.1| - 7.2e-32 111.0 0.0 1.1e-31 110.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344210040|ref|YP_004786216.1| - 1.5e-07 31.3 0.1 0.015 14.9 0.2 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphoesterase PF04185.14 gi|344210040|ref|YP_004786216.1| - 0.0024 17.1 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 2 Phosphoesterase family DUF229 PF02995.17 gi|344210040|ref|YP_004786216.1| - 0.0031 16.2 0.0 0.0045 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|344210040|ref|YP_004786216.1| - 0.0036 16.4 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Metalloenzyme PF01676.18 gi|344210040|ref|YP_004786216.1| - 0.15 11.4 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|344210040|ref|YP_004786216.1| - 0.2 10.6 0.1 11 4.9 0.0 2.3 2 1 0 2 2 2 0 Alkaline phosphatase PIN_2 PF10130.9 gi|344210041|ref|YP_004786217.1| - 0.086 13.1 0.1 0.1 12.8 0.1 1.4 1 0 0 1 1 1 0 PIN domain RHH_8 PF17723.1 gi|344210041|ref|YP_004786217.1| - 0.11 12.7 0.0 1 9.5 0.0 2.0 2 0 0 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family Pyr_redox_2 PF07992.14 gi|344210042|ref|YP_004786218.1| - 2.7e-27 95.8 0.0 3.4e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210042|ref|YP_004786218.1| - 1.2e-14 54.3 0.0 3.3e-09 36.4 0.0 2.8 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344210042|ref|YP_004786218.1| - 4.1e-06 27.3 0.0 0.048 14.2 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344210042|ref|YP_004786218.1| - 5.6e-06 25.7 4.0 0.00023 20.4 0.7 2.7 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|344210042|ref|YP_004786218.1| - 2.5e-05 24.0 3.4 0.0094 15.6 1.9 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|344210042|ref|YP_004786218.1| - 4.6e-05 22.7 0.0 0.00022 20.5 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|344210042|ref|YP_004786218.1| - 7.1e-05 22.2 0.6 0.00012 21.5 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|344210042|ref|YP_004786218.1| - 0.00014 20.7 0.2 0.016 13.9 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|344210042|ref|YP_004786218.1| - 0.00023 20.7 1.8 0.00051 19.5 0.6 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|344210042|ref|YP_004786218.1| - 0.00055 19.1 0.3 0.0013 17.9 0.2 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|344210042|ref|YP_004786218.1| - 0.0037 16.6 0.1 0.007 15.6 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|344210042|ref|YP_004786218.1| - 0.011 15.7 0.7 0.44 10.5 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|344210042|ref|YP_004786218.1| - 0.014 15.7 0.3 0.034 14.4 0.3 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|344210042|ref|YP_004786218.1| - 0.051 12.6 0.4 0.29 10.2 0.3 1.9 1 1 1 2 2 2 0 Lycopene cyclase protein RVT_3 PF13456.6 gi|344210043|ref|YP_004786219.1| - 6.3e-10 38.9 0.0 8.5e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|344210043|ref|YP_004786219.1| - 1.5e-08 34.9 0.0 2.5e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 RNase H SCP_3 PF17844.1 gi|344210043|ref|YP_004786219.1| - 0.048 13.4 0.1 0.16 11.7 0.0 1.9 1 1 0 2 2 2 0 Bacterial SCP ortholog LRV PF01816.17 gi|344210043|ref|YP_004786219.1| - 1.4 9.5 5.4 5.3 7.7 0.4 3.2 2 1 1 3 3 3 0 Leucine rich repeat variant GSDH PF07995.11 gi|344210044|ref|YP_004786220.1| - 9.1e-114 380.2 0.0 1.1e-113 380.0 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.9 gi|344210044|ref|YP_004786220.1| - 0.004 16.9 2.5 0.004 16.9 2.5 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Glucodextran_B PF09136.10 gi|344210044|ref|YP_004786220.1| - 0.63 10.4 4.6 3.3 8.2 0.1 2.6 1 1 1 2 2 2 0 Glucodextranase, domain B DUF202 PF02656.15 gi|344210045|ref|YP_004786221.1| - 0.56 10.7 2.7 0.69 10.4 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) TrkA_N PF02254.18 gi|344210047|ref|YP_004786223.1| - 1.1e-43 148.1 2.7 1.4e-22 80.1 0.4 2.7 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|344210047|ref|YP_004786223.1| - 6.7e-25 86.7 0.2 1e-11 44.5 0.1 3.4 3 0 0 3 3 3 2 TrkA-C domain 2-Hacid_dh_C PF02826.19 gi|344210047|ref|YP_004786223.1| - 0.0029 17.0 0.0 0.0075 15.6 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|344210047|ref|YP_004786223.1| - 0.014 15.8 0.7 0.076 13.5 0.1 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding XdhC_C PF13478.6 gi|344210047|ref|YP_004786223.1| - 0.061 13.8 0.3 0.8 10.2 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain DUF2193 PF09959.9 gi|344210047|ref|YP_004786223.1| - 0.1 11.1 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2193) NmrA PF05368.13 gi|344210047|ref|YP_004786223.1| - 0.26 10.8 1.8 2.7 7.5 0.0 3.1 2 2 1 3 3 3 0 NmrA-like family PGM1_C PF18105.1 gi|344210047|ref|YP_004786223.1| - 0.35 10.4 3.3 1.9 8.0 0.1 3.3 4 0 0 4 4 4 0 PGM1 C-terminal domain PHO4 PF01384.20 gi|344210048|ref|YP_004786224.1| - 1.4e-35 122.9 40.0 1.4e-34 119.6 38.3 2.5 1 1 0 1 1 1 1 Phosphate transporter family AA_permease_2 PF13520.6 gi|344210049|ref|YP_004786225.1| - 1.2e-42 146.2 41.1 1.5e-42 145.9 41.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|344210049|ref|YP_004786225.1| - 3.1e-42 144.8 39.3 3.9e-42 144.4 39.3 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|344210049|ref|YP_004786225.1| - 0.00029 19.8 12.2 0.00029 19.8 12.2 2.2 2 1 0 2 2 2 1 Spore germination protein Usp PF00582.26 gi|344210050|ref|YP_004786226.1| - 1.3e-06 28.9 0.9 0.00015 22.3 0.1 2.5 2 1 0 2 2 2 2 Universal stress protein family SCO1-SenC PF02630.14 gi|344210051|ref|YP_004786227.1| - 6.4e-21 74.7 0.2 8.2e-21 74.3 0.2 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.9 gi|344210051|ref|YP_004786227.1| - 0.0037 17.1 1.5 0.0059 16.4 1.5 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence KRAB PF01352.27 gi|344210051|ref|YP_004786227.1| - 0.11 12.2 0.1 0.25 11.0 0.1 1.6 1 0 0 1 1 1 0 KRAB box Redoxin PF08534.10 gi|344210052|ref|YP_004786228.1| - 2.2e-07 30.7 0.0 2.8e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|344210052|ref|YP_004786228.1| - 5.4e-06 26.3 0.0 7.2e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|344210052|ref|YP_004786228.1| - 0.00019 21.7 0.0 0.00032 21.0 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|344210052|ref|YP_004786228.1| - 0.00066 19.6 0.0 0.0014 18.6 0.0 1.4 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344210052|ref|YP_004786228.1| - 0.085 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain DsbD PF02683.15 gi|344210053|ref|YP_004786229.1| - 5e-14 52.7 12.8 8.9e-14 51.9 12.8 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF3188 PF11384.8 gi|344210053|ref|YP_004786229.1| - 0.098 12.4 0.4 0.098 12.4 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) TrkH PF02386.16 gi|344210054|ref|YP_004786230.1| - 1e-66 225.4 14.4 6.3e-66 222.8 14.4 2.0 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|344210055|ref|YP_004786231.1| - 7.4e-25 87.5 4.6 1.1e-24 86.9 2.5 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|344210055|ref|YP_004786231.1| - 4e-14 52.2 0.5 1.5e-12 47.2 0.1 2.4 2 0 0 2 2 2 1 TrkA-C domain Shikimate_DH PF01488.20 gi|344210055|ref|YP_004786231.1| - 0.0005 20.2 0.2 0.00081 19.5 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|344210055|ref|YP_004786231.1| - 0.00097 19.5 0.9 0.002 18.5 0.3 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|344210055|ref|YP_004786231.1| - 0.0011 19.2 0.5 0.0027 17.9 0.2 1.8 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.26 gi|344210055|ref|YP_004786231.1| - 0.0022 17.9 0.4 0.0078 16.2 0.5 1.7 1 1 1 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|344210055|ref|YP_004786231.1| - 0.0037 16.6 1.8 0.0058 15.9 1.8 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|344210055|ref|YP_004786231.1| - 0.0042 17.3 0.9 0.0093 16.2 0.9 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|344210055|ref|YP_004786231.1| - 0.005 16.8 3.1 0.0073 16.2 1.8 1.9 1 1 0 1 1 1 1 NAD(P)H-binding XdhC_C PF13478.6 gi|344210055|ref|YP_004786231.1| - 0.0069 16.9 0.1 0.013 16.0 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|344210055|ref|YP_004786231.1| - 0.011 16.3 0.4 0.043 14.4 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Peripla_BP_3 PF13377.6 gi|344210055|ref|YP_004786231.1| - 0.012 15.9 0.1 0.017 15.4 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein-like domain PEP-utilizers PF00391.23 gi|344210055|ref|YP_004786231.1| - 0.022 14.5 0.0 0.055 13.2 0.0 1.7 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain GFO_IDH_MocA PF01408.22 gi|344210055|ref|YP_004786231.1| - 0.033 15.0 0.6 0.1 13.5 0.6 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|344210055|ref|YP_004786231.1| - 0.039 13.8 0.3 0.059 13.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|344210055|ref|YP_004786231.1| - 0.04 13.5 1.8 0.18 11.3 0.4 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATPgrasp_N PF18130.1 gi|344210055|ref|YP_004786231.1| - 0.049 14.2 1.8 0.11 13.1 1.8 1.6 1 0 0 1 1 1 0 ATP-grasp N-terminal domain PK_C PF02887.16 gi|344210055|ref|YP_004786231.1| - 0.084 13.1 0.2 0.21 11.8 0.2 1.7 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|344210055|ref|YP_004786231.1| - 0.085 12.2 0.3 0.24 10.7 0.1 1.8 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|344210055|ref|YP_004786231.1| - 0.39 9.9 3.1 3.5 6.8 1.1 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase p25-alpha PF05517.12 gi|344210056|ref|YP_004786232.1| - 0.091 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 p25-alpha TrkA_C PF02080.21 gi|344210057|ref|YP_004786233.1| - 6.5e-13 48.3 0.6 1.2e-12 47.5 0.6 1.4 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|344210057|ref|YP_004786233.1| - 6e-12 44.9 0.2 1.2e-11 44.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344210057|ref|YP_004786233.1| - 2.6e-11 43.2 0.4 4.9e-11 42.3 0.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344210057|ref|YP_004786233.1| - 4.9e-06 26.4 0.0 1.1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344210057|ref|YP_004786233.1| - 1.7e-05 24.8 0.0 3.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210057|ref|YP_004786233.1| - 8.3e-05 22.3 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|344210057|ref|YP_004786233.1| - 0.00012 21.8 0.1 0.00062 19.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HrcA_DNA-bdg PF03444.15 gi|344210057|ref|YP_004786233.1| - 0.00037 20.1 0.0 0.00063 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.19 gi|344210057|ref|YP_004786233.1| - 0.0013 18.8 0.0 0.0026 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|344210057|ref|YP_004786233.1| - 0.0055 16.6 0.0 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|344210057|ref|YP_004786233.1| - 0.0081 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|344210057|ref|YP_004786233.1| - 0.0087 15.8 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|344210057|ref|YP_004786233.1| - 0.024 15.0 0.1 0.063 13.6 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator MarR PF01047.22 gi|344210057|ref|YP_004786233.1| - 0.028 14.3 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 gi|344210057|ref|YP_004786233.1| - 0.11 12.3 0.1 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|344210057|ref|YP_004786233.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Med11 PF10280.9 gi|344210057|ref|YP_004786233.1| - 0.13 12.7 0.2 3.8 8.0 0.0 2.3 2 1 0 2 2 2 0 Mediator complex protein HTH_13 PF11972.8 gi|344210057|ref|YP_004786233.1| - 0.15 12.2 0.1 4 7.6 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Usp PF00582.26 gi|344210058|ref|YP_004786234.1| - 9.4e-10 39.2 3.8 0.00012 22.6 1.4 3.2 2 2 0 2 2 2 2 Universal stress protein family MafB PF06255.13 gi|344210058|ref|YP_004786234.1| - 0.13 11.7 0.2 0.17 11.3 0.2 1.2 1 0 0 1 1 1 0 Neisseria toxin MafB Nitroreductase PF00881.24 gi|344210059|ref|YP_004786235.1| - 1.9e-17 63.8 0.3 3.9e-08 33.5 0.1 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|344210059|ref|YP_004786235.1| - 6.7e-05 22.5 0.0 0.0002 21.0 0.0 1.7 2 0 0 2 2 2 1 Putative TM nitroreductase LtrA PF06772.11 gi|344210060|ref|YP_004786236.1| - 0.0096 15.2 6.8 0.0096 15.2 6.8 2.7 2 1 1 3 3 3 1 Bacterial low temperature requirement A protein (LtrA) Nudix_N_2 PF14803.6 gi|344210060|ref|YP_004786236.1| - 0.42 10.6 1.1 0.58 10.1 0.3 1.7 2 0 0 2 2 2 0 Nudix N-terminal HTH_Crp_2 PF13545.6 gi|344210061|ref|YP_004786237.1| - 5.2e-09 36.0 0.1 9.4e-09 35.1 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|344210061|ref|YP_004786237.1| - 3.1e-06 27.2 0.3 7.6e-06 25.9 0.3 1.7 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|344210061|ref|YP_004786237.1| - 3.4e-06 26.8 0.1 7.1e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210061|ref|YP_004786237.1| - 0.0001 22.2 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210061|ref|YP_004786237.1| - 0.00015 21.3 0.1 0.00024 20.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344210061|ref|YP_004786237.1| - 0.00031 20.5 0.0 0.00058 19.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344210061|ref|YP_004786237.1| - 0.00047 20.0 0.0 0.00083 19.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344210061|ref|YP_004786237.1| - 0.00096 19.2 0.3 0.002 18.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Crp PF00325.20 gi|344210061|ref|YP_004786237.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|344210061|ref|YP_004786237.1| - 0.004 17.5 0.0 0.0081 16.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|344210061|ref|YP_004786237.1| - 0.0048 16.7 0.3 0.022 14.6 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.21 gi|344210061|ref|YP_004786237.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|344210061|ref|YP_004786237.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.15 gi|344210061|ref|YP_004786237.1| - 0.023 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_3 PF01381.22 gi|344210061|ref|YP_004786237.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix GP17 PF17420.2 gi|344210061|ref|YP_004786237.1| - 0.16 12.2 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Superinfection exclusion gene product 17 ABC_tran PF00005.27 gi|344210062|ref|YP_004786238.1| - 1.3e-24 87.2 0.0 1.9e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210062|ref|YP_004786238.1| - 2.4e-12 47.3 0.0 7.6e-07 29.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|344210062|ref|YP_004786238.1| - 6.1e-05 22.1 0.1 9.5e-05 21.5 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SMC_N PF02463.19 gi|344210062|ref|YP_004786238.1| - 0.00016 21.2 0.0 0.15 11.5 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344210062|ref|YP_004786238.1| - 0.00037 20.3 0.0 0.26 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|344210062|ref|YP_004786238.1| - 0.0021 18.6 0.1 0.0034 17.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210062|ref|YP_004786238.1| - 0.0091 15.7 0.0 0.026 14.3 0.0 1.7 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|344210062|ref|YP_004786238.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344210062|ref|YP_004786238.1| - 0.021 15.2 0.5 1.1 9.7 0.1 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|344210062|ref|YP_004786238.1| - 0.023 14.5 0.1 0.053 13.3 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|344210062|ref|YP_004786238.1| - 0.077 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|344210062|ref|YP_004786238.1| - 0.078 13.3 0.0 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|344210062|ref|YP_004786238.1| - 0.1 12.4 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|344210062|ref|YP_004786238.1| - 0.19 11.6 0.0 0.58 10.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|344210062|ref|YP_004786238.1| - 0.22 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|344210062|ref|YP_004786238.1| - 0.29 9.7 0.4 10 4.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain LSPR PF06049.12 gi|344210062|ref|YP_004786238.1| - 0.99 9.5 4.9 27 5.1 0.2 3.7 3 1 0 3 3 3 0 Coagulation Factor V LSPD Repeat DUF2249 PF10006.9 gi|344210064|ref|YP_004786240.1| - 6e-24 83.7 0.2 6.6e-24 83.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2378 PF09536.10 gi|344210066|ref|YP_004786242.1| - 0.015 15.2 0.0 1.7 8.5 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2378) MarR_2 PF12802.7 gi|344210067|ref|YP_004786243.1| - 2.2e-06 27.5 0.7 5.4e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|344210067|ref|YP_004786243.1| - 5.4e-06 26.1 0.0 1.2e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|344210067|ref|YP_004786243.1| - 6.7e-05 22.6 2.9 0.00033 20.3 0.0 2.7 3 0 0 3 3 3 1 Replication protein C N-terminal domain MarR PF01047.22 gi|344210067|ref|YP_004786243.1| - 0.00013 21.8 0.0 0.00029 20.7 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|344210067|ref|YP_004786243.1| - 0.0003 20.6 0.0 0.0006 19.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|344210067|ref|YP_004786243.1| - 0.00033 21.1 0.1 0.0018 18.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.21 gi|344210067|ref|YP_004786243.1| - 0.011 15.4 1.1 0.036 13.7 0.0 2.4 3 1 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|344210067|ref|YP_004786243.1| - 0.02 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|344210067|ref|YP_004786243.1| - 0.024 15.0 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF1690 PF07956.11 gi|344210067|ref|YP_004786243.1| - 0.12 12.8 4.0 0.19 12.2 4.0 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) Syntaxin-6_N PF09177.11 gi|344210067|ref|YP_004786243.1| - 0.95 10.1 6.7 0.78 10.3 4.3 2.1 2 1 0 2 2 2 0 Syntaxin 6, N-terminal HTH_20 PF12840.7 gi|344210068|ref|YP_004786244.1| - 6.1e-12 45.4 0.3 8.1e-12 45.0 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210068|ref|YP_004786244.1| - 7.3e-07 29.0 0.1 1.4e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344210068|ref|YP_004786244.1| - 1.4e-06 28.0 0.0 3.2e-06 26.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|344210068|ref|YP_004786244.1| - 6e-06 25.7 0.0 1.1e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|344210068|ref|YP_004786244.1| - 8.5e-06 26.2 0.0 5.2e-05 23.7 0.0 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|344210068|ref|YP_004786244.1| - 0.0028 17.9 0.0 0.0034 17.7 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) TrmB PF01978.19 gi|344210068|ref|YP_004786244.1| - 0.0048 16.7 0.0 0.0078 16.1 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|344210068|ref|YP_004786244.1| - 0.0095 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|344210068|ref|YP_004786244.1| - 0.11 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.6 gi|344210068|ref|YP_004786244.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4 PF04545.16 gi|344210068|ref|YP_004786244.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Fructosamin_kin PF03881.14 gi|344210069|ref|YP_004786245.1| - 4.5e-41 141.0 0.0 5.5e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|344210069|ref|YP_004786245.1| - 1.3e-14 54.7 5.1 1.7e-14 54.3 5.1 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 gi|344210069|ref|YP_004786245.1| - 0.0023 17.4 0.0 0.0049 16.3 0.0 1.5 1 0 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase Sugar_tr PF00083.24 gi|344210070|ref|YP_004786246.1| - 2.6e-123 412.2 20.9 3e-123 412.0 20.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|344210070|ref|YP_004786246.1| - 1.4e-42 145.9 77.4 4.5e-33 114.6 42.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|344210070|ref|YP_004786246.1| - 1.9e-08 33.2 2.8 1.9e-08 33.2 2.8 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.7 gi|344210070|ref|YP_004786246.1| - 0.00077 18.4 0.2 0.00077 18.4 0.2 2.8 1 1 1 3 3 3 1 MFS_1 like family Bac_export_3 PF01313.19 gi|344210070|ref|YP_004786246.1| - 0.021 14.8 0.3 0.021 14.8 0.3 3.6 3 1 0 3 3 3 0 Bacterial export proteins, family 3 MFS_3 PF05977.13 gi|344210070|ref|YP_004786246.1| - 0.083 11.3 18.1 0.015 13.7 7.8 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector Usp PF00582.26 gi|344210071|ref|YP_004786247.1| - 1.1e-16 61.6 0.8 1.4e-16 61.3 0.8 1.2 1 0 0 1 1 1 1 Universal stress protein family Peripla_BP_2 PF01497.18 gi|344210072|ref|YP_004786248.1| - 5.2e-19 68.7 0.0 8.3e-19 68.1 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|344210072|ref|YP_004786248.1| - 0.0019 18.0 0.5 0.0033 17.2 0.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Sdh5 PF03937.16 gi|344210072|ref|YP_004786248.1| - 0.14 12.2 0.1 6.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Peripla_BP_2 PF01497.18 gi|344210073|ref|YP_004786249.1| - 6.5e-24 84.8 0.0 1.1e-23 84.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|344210073|ref|YP_004786249.1| - 0.0019 18.0 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence YqgF PF14639.6 gi|344210073|ref|YP_004786249.1| - 0.073 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 Peripla_BP_2 PF01497.18 gi|344210074|ref|YP_004786250.1| - 1.6e-11 44.2 0.0 2.3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HTH_24 PF13412.6 gi|344210075|ref|YP_004786251.1| - 2.8e-12 46.0 0.2 4.4e-12 45.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344210075|ref|YP_004786251.1| - 3.4e-11 42.8 0.9 6.3e-11 41.9 0.9 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344210075|ref|YP_004786251.1| - 1.2e-05 25.2 0.0 2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344210075|ref|YP_004786251.1| - 4.1e-05 23.6 0.0 0.0001 22.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210075|ref|YP_004786251.1| - 0.00016 21.3 0.1 0.005 16.6 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|344210075|ref|YP_004786251.1| - 0.00022 21.0 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344210075|ref|YP_004786251.1| - 0.00026 20.8 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344210075|ref|YP_004786251.1| - 0.00035 20.3 0.0 0.00063 19.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|344210075|ref|YP_004786251.1| - 0.0005 20.4 0.0 0.0011 19.2 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|344210075|ref|YP_004786251.1| - 0.0014 18.8 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|344210075|ref|YP_004786251.1| - 0.0032 17.1 0.0 0.0058 16.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.6 gi|344210075|ref|YP_004786251.1| - 0.0075 16.7 0.1 0.018 15.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_19 PF12844.7 gi|344210075|ref|YP_004786251.1| - 0.017 15.1 0.5 0.064 13.3 0.5 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|344210075|ref|YP_004786251.1| - 0.018 15.0 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_Mga PF08280.11 gi|344210075|ref|YP_004786251.1| - 0.022 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 gi|344210075|ref|YP_004786251.1| - 0.051 13.0 0.2 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.22 gi|344210075|ref|YP_004786251.1| - 0.078 12.9 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|344210075|ref|YP_004786251.1| - 0.11 12.5 0.1 0.23 11.4 0.0 1.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|344210075|ref|YP_004786251.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Proton_antipo_M PF00361.20 gi|344210076|ref|YP_004786252.1| - 1.9e-34 119.2 17.4 1.9e-34 119.2 17.4 2.4 1 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|344210076|ref|YP_004786252.1| - 3.1e-07 30.4 0.1 2.6e-06 27.4 0.1 2.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.9 gi|344210077|ref|YP_004786253.1| - 2.8e-264 879.1 0.0 3.1e-264 878.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Bac_luciferase PF00296.20 gi|344210078|ref|YP_004786254.1| - 6.7e-33 114.4 2.0 7.7e-33 114.2 2.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase ADH_N PF08240.12 gi|344210079|ref|YP_004786255.1| - 1.4e-31 108.6 0.4 2.7e-31 107.7 0.4 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210079|ref|YP_004786255.1| - 2e-28 99.0 0.7 2.9e-28 98.5 0.7 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|344210079|ref|YP_004786255.1| - 3.2e-12 46.4 2.9 4.6e-12 45.9 2.9 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|344210079|ref|YP_004786255.1| - 2.2e-05 25.5 0.5 4.4e-05 24.5 0.5 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.16 gi|344210079|ref|YP_004786255.1| - 0.00064 20.4 2.4 0.0011 19.6 2.4 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344210079|ref|YP_004786255.1| - 0.041 13.2 0.1 0.073 12.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MR_MLE_C PF13378.6 gi|344210080|ref|YP_004786256.1| - 5.1e-62 209.3 0.2 7.3e-62 208.8 0.2 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210080|ref|YP_004786256.1| - 2.1e-21 76.3 0.0 4.4e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 gi|344210081|ref|YP_004786257.1| - 4.4e-74 249.0 1.3 4.9e-74 248.8 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344210081|ref|YP_004786257.1| - 6.9e-60 201.9 2.8 8.2e-60 201.6 2.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344210081|ref|YP_004786257.1| - 4.1e-14 52.9 0.9 5.7e-14 52.4 0.9 1.2 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|344210081|ref|YP_004786257.1| - 0.0011 19.3 0.1 0.0017 18.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KdpD PF02702.17 gi|344210081|ref|YP_004786257.1| - 0.026 14.0 0.3 0.043 13.3 0.3 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Epimerase PF01370.21 gi|344210081|ref|YP_004786257.1| - 0.063 12.7 0.6 0.1 12.1 0.6 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344210081|ref|YP_004786257.1| - 0.088 11.8 0.3 0.12 11.4 0.3 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF948 PF06103.11 gi|344210081|ref|YP_004786257.1| - 0.14 12.4 2.0 0.33 11.2 1.7 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) FGGY_C PF02782.16 gi|344210082|ref|YP_004786258.1| - 3.6e-23 82.3 0.0 5e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 gi|344210082|ref|YP_004786258.1| - 6.3e-18 65.2 0.0 8.6e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Aldolase_II PF00596.21 gi|344210083|ref|YP_004786259.1| - 3e-50 170.8 0.3 3.5e-50 170.5 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain ABC_tran PF00005.27 gi|344210084|ref|YP_004786260.1| - 1.3e-31 109.9 0.0 2.5e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|344210084|ref|YP_004786260.1| - 3.1e-13 50.3 0.1 2.8e-12 47.3 0.1 2.6 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|344210084|ref|YP_004786260.1| - 1.3e-10 41.3 0.3 5e-10 39.4 0.1 2.2 2 0 0 2 2 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|344210084|ref|YP_004786260.1| - 7e-09 36.1 0.1 2.4e-08 34.4 0.0 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|344210084|ref|YP_004786260.1| - 1.1e-08 35.3 0.0 0.00066 19.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210084|ref|YP_004786260.1| - 0.00024 20.6 0.3 0.00057 19.4 0.3 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|344210084|ref|YP_004786260.1| - 0.00039 20.4 0.0 0.00077 19.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|344210084|ref|YP_004786260.1| - 0.00045 19.9 0.0 0.00098 18.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|344210084|ref|YP_004786260.1| - 0.0027 17.9 0.0 0.017 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|344210084|ref|YP_004786260.1| - 0.0036 17.1 1.0 0.048 13.4 0.7 2.5 2 1 0 2 2 2 1 Cytidylate kinase AAA_22 PF13401.6 gi|344210084|ref|YP_004786260.1| - 0.0041 17.4 0.0 0.013 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|344210084|ref|YP_004786260.1| - 0.01 15.5 0.1 0.018 14.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344210084|ref|YP_004786260.1| - 0.017 14.7 0.1 0.61 9.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|344210084|ref|YP_004786260.1| - 0.017 15.5 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344210084|ref|YP_004786260.1| - 0.025 15.0 0.1 0.079 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|344210084|ref|YP_004786260.1| - 0.027 15.0 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain TOBE PF03459.17 gi|344210084|ref|YP_004786260.1| - 0.027 14.8 0.0 0.1 12.9 0.0 2.0 1 0 0 1 1 1 0 TOBE domain DraK_HK_N PF18092.1 gi|344210084|ref|YP_004786260.1| - 0.046 14.1 0.6 3.4 8.2 0.1 3.2 3 0 0 3 3 3 0 DraK Histidine Kinase N-terminal domain AAA_28 PF13521.6 gi|344210084|ref|YP_004786260.1| - 0.06 13.6 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain SAM_LFY PF01698.16 gi|344210084|ref|YP_004786260.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Floricaula / Leafy protein SAM domain AAA_15 PF13175.6 gi|344210084|ref|YP_004786260.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|344210084|ref|YP_004786260.1| - 0.099 13.2 0.0 0.21 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|344210084|ref|YP_004786260.1| - 0.11 11.5 0.1 0.49 9.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MMR_HSR1 PF01926.23 gi|344210084|ref|YP_004786260.1| - 0.12 12.5 0.2 0.36 10.9 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|344210084|ref|YP_004786260.1| - 0.14 12.6 0.1 0.29 11.5 0.1 1.7 1 1 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|344210085|ref|YP_004786261.1| - 3.7e-17 62.7 19.1 3.7e-17 62.7 19.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PMT_4TMC PF16192.5 gi|344210085|ref|YP_004786261.1| - 0.62 9.6 10.8 2.4 7.7 8.3 3.0 1 1 1 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase TMEMspv1-c74-12 PF11044.8 gi|344210085|ref|YP_004786261.1| - 2.9 7.9 5.8 0.35 10.9 0.7 2.2 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein BPD_transp_1 PF00528.22 gi|344210086|ref|YP_004786262.1| - 2.8e-18 66.3 21.4 2.8e-18 66.3 21.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|344210087|ref|YP_004786263.1| - 4.1e-25 89.4 3.2 6.1e-25 88.8 3.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344210087|ref|YP_004786263.1| - 0.013 15.3 1.0 0.023 14.5 1.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ADH_N PF08240.12 gi|344210088|ref|YP_004786264.1| - 2.5e-33 114.2 3.2 2.5e-33 114.2 3.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210088|ref|YP_004786264.1| - 4.7e-21 75.1 0.0 7.5e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|344210088|ref|YP_004786264.1| - 4.4e-10 39.4 0.0 8.9e-10 38.4 0.0 1.5 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|344210088|ref|YP_004786264.1| - 5.3e-05 24.3 0.0 9.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase F420_oxidored PF03807.17 gi|344210088|ref|YP_004786264.1| - 0.00067 20.2 0.0 0.0013 19.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|344210088|ref|YP_004786264.1| - 0.025 14.8 0.0 0.056 13.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NTP_transf_3 PF12804.7 gi|344210088|ref|YP_004786264.1| - 0.038 14.3 0.1 0.067 13.5 0.1 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Rossmann-like PF10727.9 gi|344210088|ref|YP_004786264.1| - 0.047 13.6 0.1 0.13 12.1 0.1 1.8 1 1 1 2 2 2 0 Rossmann-like domain FAD_binding_3 PF01494.19 gi|344210088|ref|YP_004786264.1| - 0.15 11.3 0.1 0.22 10.7 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain IclR PF01614.18 gi|344210089|ref|YP_004786265.1| - 4e-29 101.1 0.0 3.9e-28 97.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344210089|ref|YP_004786265.1| - 8.4e-11 41.5 0.4 2.4e-10 40.1 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344210089|ref|YP_004786265.1| - 2.3e-07 30.6 0.0 3.6e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|344210089|ref|YP_004786265.1| - 1e-05 25.4 0.0 3.3e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|344210089|ref|YP_004786265.1| - 2.6e-05 24.0 0.1 6.5e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344210089|ref|YP_004786265.1| - 7.6e-05 22.7 0.1 0.0002 21.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210089|ref|YP_004786265.1| - 0.00045 19.7 0.0 0.0008 18.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344210089|ref|YP_004786265.1| - 0.0005 19.9 0.1 0.0011 18.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|344210089|ref|YP_004786265.1| - 0.0046 17.3 0.1 0.0085 16.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|344210089|ref|YP_004786265.1| - 0.0062 16.7 0.1 0.013 15.7 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|344210089|ref|YP_004786265.1| - 0.016 15.3 0.0 0.028 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|344210089|ref|YP_004786265.1| - 0.038 14.4 0.0 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein MarR PF01047.22 gi|344210089|ref|YP_004786265.1| - 0.044 13.7 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|344210089|ref|YP_004786265.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HEAT_2 PF13646.6 gi|344210090|ref|YP_004786266.1| - 1.7e-13 50.8 10.4 8e-08 32.6 1.0 3.3 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.6 gi|344210090|ref|YP_004786266.1| - 1e-08 35.5 8.6 0.016 15.7 0.2 4.8 2 1 3 5 5 5 4 HEAT-like repeat HEAT PF02985.22 gi|344210090|ref|YP_004786266.1| - 1.6e-08 34.1 1.4 0.08 13.2 0.0 5.0 5 0 0 5 5 5 2 HEAT repeat Cnd1 PF12717.7 gi|344210090|ref|YP_004786266.1| - 0.0002 21.5 0.0 0.5 10.4 0.0 2.6 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|344210090|ref|YP_004786266.1| - 0.0048 15.5 0.1 0.94 8.0 0.1 2.6 1 1 2 3 3 3 2 Adaptin N terminal region DZR PF12773.7 gi|344210090|ref|YP_004786266.1| - 0.0099 15.9 0.3 0.022 14.8 0.3 1.6 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344210090|ref|YP_004786266.1| - 0.011 15.5 4.7 0.02 14.6 4.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|344210090|ref|YP_004786266.1| - 0.05 13.0 6.7 0.11 11.9 6.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain IFRD PF05004.13 gi|344210090|ref|YP_004786266.1| - 0.074 12.2 0.1 1.9 7.5 0.0 2.3 2 1 0 2 2 2 0 Interferon-related developmental regulator (IFRD) TPR_4 PF07721.14 gi|344210090|ref|YP_004786266.1| - 0.41 11.4 7.9 14 6.6 0.1 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat HEAT_PBS PF03130.16 gi|344210090|ref|YP_004786266.1| - 0.81 10.5 13.9 11 7.0 0.2 5.4 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat LUD_dom PF02589.15 gi|344210091|ref|YP_004786267.1| - 2.2e-16 60.1 0.6 3e-15 56.4 0.0 1.9 1 1 1 2 2 2 2 LUD domain LUD_dom PF02589.15 gi|344210092|ref|YP_004786268.1| - 5.4e-42 143.7 0.2 1e-41 142.8 0.2 1.5 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|344210092|ref|YP_004786268.1| - 1.6e-08 34.9 3.0 3.5e-08 33.8 3.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344210092|ref|YP_004786268.1| - 7e-08 32.5 3.7 0.00024 21.1 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344210092|ref|YP_004786268.1| - 8.1e-07 29.1 3.3 2e-06 27.9 3.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344210092|ref|YP_004786268.1| - 8.5e-07 29.4 2.1 1.6e-06 28.5 2.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344210092|ref|YP_004786268.1| - 2e-06 28.3 5.6 4.7e-06 27.1 5.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|344210092|ref|YP_004786268.1| - 0.0001 22.5 1.0 0.013 15.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344210092|ref|YP_004786268.1| - 0.00016 21.3 13.8 0.00021 21.0 3.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344210092|ref|YP_004786268.1| - 0.00025 21.0 2.7 0.00025 21.0 2.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|344210092|ref|YP_004786268.1| - 0.00026 21.0 8.8 0.0014 18.7 8.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344210092|ref|YP_004786268.1| - 0.0011 19.8 3.7 0.04 14.9 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|344210092|ref|YP_004786268.1| - 0.01 15.9 15.3 0.04 14.0 4.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344210092|ref|YP_004786268.1| - 0.03 14.8 3.2 0.03 14.8 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|344210092|ref|YP_004786268.1| - 0.041 14.8 5.9 0.041 14.8 5.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|344210092|ref|YP_004786268.1| - 0.052 13.3 3.4 0.1 12.4 0.2 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|344210092|ref|YP_004786268.1| - 0.11 13.4 7.8 0.11 13.3 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF362 PF04015.12 gi|344210093|ref|YP_004786269.1| - 0.00021 21.6 0.0 0.00041 20.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|344210093|ref|YP_004786269.1| - 0.00042 19.6 0.0 0.00065 18.9 0.0 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF4147 PF13660.6 gi|344210094|ref|YP_004786270.1| - 2.8e-70 236.4 1.1 3.8e-70 236.0 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|344210094|ref|YP_004786270.1| - 1.9e-25 89.1 7.7 1.9e-25 89.1 7.7 2.1 2 0 0 2 2 2 1 MOFRL family Glyco_hydro_88 PF07470.13 gi|344210095|ref|YP_004786271.1| - 1.1e-57 195.7 0.0 1.4e-57 195.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 gi|344210095|ref|YP_004786271.1| - 0.076 11.5 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 Beta-L-arabinofuranosidase, GH127 VCBS PF13517.6 gi|344210096|ref|YP_004786272.1| - 9.4e-29 99.8 22.2 5.8e-10 39.6 1.9 5.5 3 2 2 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|344210096|ref|YP_004786272.1| - 3e-22 78.4 30.3 0.018 15.2 0.0 7.3 7 0 0 7 7 7 7 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|344210096|ref|YP_004786272.1| - 4.2e-08 32.8 7.6 0.22 10.9 0.0 6.1 5 1 2 7 7 7 3 Insecticide toxin TcdB middle/N-terminal region PliI PF16743.5 gi|344210096|ref|YP_004786272.1| - 3.4e-06 26.8 5.1 6.2 6.6 0.0 6.3 3 2 3 7 7 7 2 Periplasmic lysozyme inhibitor of I-type lysozyme Itfg2 PF15907.5 gi|344210096|ref|YP_004786272.1| - 5.5e-05 22.4 7.2 1.3 8.0 0.2 5.1 3 1 1 5 5 5 3 Integrin-alpha FG-GAP repeat-containing protein 2 BBS2_Mid PF14783.6 gi|344210096|ref|YP_004786272.1| - 0.00024 21.1 2.6 3.8 7.6 0.0 5.0 5 0 0 5 5 5 2 Ciliary BBSome complex subunit 2, middle region UDPG_MGDP_dh_N PF03721.14 gi|344210097|ref|YP_004786273.1| - 2.6e-43 147.8 0.0 4.2e-43 147.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|344210097|ref|YP_004786273.1| - 3.1e-23 81.8 0.0 5.2e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|344210097|ref|YP_004786273.1| - 9.2e-18 64.6 0.0 2.7e-17 63.1 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|344210097|ref|YP_004786273.1| - 0.0036 17.8 0.0 1.7 9.3 0.0 3.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|344210097|ref|YP_004786273.1| - 0.0071 16.5 0.0 0.037 14.2 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|344210097|ref|YP_004786273.1| - 0.0076 16.1 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|344210097|ref|YP_004786273.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|344210097|ref|YP_004786273.1| - 0.014 14.8 0.0 0.088 12.2 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|344210097|ref|YP_004786273.1| - 0.015 15.6 0.0 1.2 9.4 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|344210097|ref|YP_004786273.1| - 0.023 15.0 0.1 0.18 12.1 0.0 2.5 2 1 0 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|344210097|ref|YP_004786273.1| - 0.09 12.8 0.0 0.63 10.0 0.0 2.4 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|344210097|ref|YP_004786273.1| - 0.17 12.5 0.0 0.72 10.4 0.0 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Polysacc_synt_3 PF13440.6 gi|344210098|ref|YP_004786274.1| - 8.2e-79 264.9 3.3 8.2e-79 264.9 3.3 2.1 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|344210098|ref|YP_004786274.1| - 7.8e-34 117.3 4.0 7.8e-34 117.3 4.0 3.1 3 1 1 4 4 4 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|344210098|ref|YP_004786274.1| - 5e-06 26.6 16.9 5e-06 26.6 16.9 2.8 3 0 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Glycos_transf_1 PF00534.20 gi|344210099|ref|YP_004786275.1| - 1.7e-32 112.3 0.0 7.3e-32 110.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210099|ref|YP_004786275.1| - 3.9e-27 95.3 0.0 6.8e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210099|ref|YP_004786275.1| - 1.7e-15 57.4 0.0 4.2e-15 56.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210099|ref|YP_004786275.1| - 4.2e-11 43.5 0.1 7.6e-11 42.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210099|ref|YP_004786275.1| - 1.7e-05 25.1 0.0 4.2e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344210099|ref|YP_004786275.1| - 0.00071 19.6 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF1616 PF07760.11 gi|344210101|ref|YP_004786277.1| - 2e-64 217.8 6.7 2.4e-64 217.6 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Sulfatase PF00884.23 gi|344210103|ref|YP_004786279.1| - 7.7e-37 127.3 0.8 1.1e-36 126.8 0.8 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344210103|ref|YP_004786279.1| - 0.00028 20.6 0.7 0.0021 17.7 0.7 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|344210104|ref|YP_004786280.1| - 0.00083 18.8 0.4 0.0011 18.4 0.4 1.2 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.12 gi|344210104|ref|YP_004786280.1| - 0.0065 16.6 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 PglZ domain Pectate_lyase_3 PF12708.7 gi|344210105|ref|YP_004786281.1| - 6.7e-16 58.8 9.1 7e-15 55.4 0.2 3.6 1 1 0 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|344210105|ref|YP_004786281.1| - 6.6e-06 26.1 12.5 0.0014 18.5 9.3 3.0 1 1 1 2 2 2 2 Right handed beta helix region End_N_terminal PF12218.8 gi|344210105|ref|YP_004786281.1| - 0.026 14.2 0.2 0.069 12.9 0.2 1.7 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase Sulfatase PF00884.23 gi|344210106|ref|YP_004786282.1| - 0.00011 21.7 0.2 0.00013 21.5 0.2 1.1 1 0 0 1 1 1 1 Sulfatase Pectate_lyase_3 PF12708.7 gi|344210107|ref|YP_004786283.1| - 1.2e-11 44.9 6.1 9.7e-11 41.9 2.9 3.3 1 1 1 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|344210107|ref|YP_004786283.1| - 0.0003 20.7 3.7 0.0003 20.7 3.7 2.7 2 1 0 2 2 2 1 Right handed beta helix region ChlamPMP_M PF07548.11 gi|344210107|ref|YP_004786283.1| - 0.13 12.2 0.3 0.64 9.9 0.0 2.1 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein middle domain Glycos_transf_2 PF00535.26 gi|344210108|ref|YP_004786284.1| - 5.5e-28 97.9 1.0 7.9e-28 97.4 0.5 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210108|ref|YP_004786284.1| - 7.8e-17 61.9 0.2 1.3e-16 61.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344210108|ref|YP_004786284.1| - 1.1e-09 38.2 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_2 PF07719.17 gi|344210108|ref|YP_004786284.1| - 0.071 13.3 0.9 0.18 12.0 0.9 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Glyco_transf_64 PF09258.10 gi|344210108|ref|YP_004786284.1| - 0.17 11.2 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain Epimerase_2 PF02350.19 gi|344210109|ref|YP_004786285.1| - 1.7e-102 342.8 0.0 2e-102 342.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|344210109|ref|YP_004786285.1| - 0.073 13.1 0.0 0.17 11.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210109|ref|YP_004786285.1| - 0.11 12.9 0.0 0.38 11.2 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain MGDG_synth PF06925.11 gi|344210109|ref|YP_004786285.1| - 0.22 11.6 0.0 0.44 10.6 0.0 1.5 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase Glycos_transf_1 PF00534.20 gi|344210110|ref|YP_004786286.1| - 3.7e-29 101.5 0.0 5.3e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210110|ref|YP_004786286.1| - 2.3e-23 83.1 0.0 5.1e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210110|ref|YP_004786286.1| - 1.5e-12 47.9 0.1 3.5e-12 46.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210110|ref|YP_004786286.1| - 3.7e-11 43.7 0.5 8.8e-10 39.2 0.0 2.7 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210110|ref|YP_004786286.1| - 1e-06 29.0 0.0 2.9e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Hepar_II_III PF07940.13 gi|344210111|ref|YP_004786287.1| - 6e-36 124.2 2.1 1.4e-35 123.0 2.1 1.6 1 0 0 1 1 1 1 Heparinase II/III-like protein Hepar_II_III_N PF16889.5 gi|344210111|ref|YP_004786287.1| - 1.6e-19 70.4 0.0 2.3e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Heparinase II/III N-terminus Glyco_trans_1_4 PF13692.6 gi|344210112|ref|YP_004786288.1| - 1.4e-19 70.9 0.0 2.4e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|344210112|ref|YP_004786288.1| - 2.1e-16 60.8 0.8 3.4e-16 60.1 0.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|344210112|ref|YP_004786288.1| - 2.7e-15 56.3 0.0 3.9e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210112|ref|YP_004786288.1| - 5.3e-11 42.8 0.1 1.7e-10 41.2 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|344210112|ref|YP_004786288.1| - 1.2e-05 25.6 0.0 2.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|344210113|ref|YP_004786289.1| - 7.1e-09 35.7 0.0 2.3e-08 34.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|344210113|ref|YP_004786289.1| - 1.1e-07 31.6 0.0 0.0073 15.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|344210113|ref|YP_004786289.1| - 5.5e-06 26.4 0.0 0.03 14.2 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|344210113|ref|YP_004786289.1| - 0.00048 19.6 0.0 0.024 14.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|344210113|ref|YP_004786289.1| - 0.00049 19.7 0.0 0.00079 19.0 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_trans_2_3 PF13632.6 gi|344210113|ref|YP_004786289.1| - 0.00079 19.4 0.0 0.0026 17.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 PTS_IIB PF02302.17 gi|344210114|ref|YP_004786290.1| - 5.8e-17 62.2 1.6 8.1e-17 61.7 1.6 1.2 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.18 gi|344210115|ref|YP_004786291.1| - 7.3e-106 353.6 0.0 9.8e-106 353.1 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|344210115|ref|YP_004786291.1| - 3e-24 85.4 0.2 3e-24 85.4 0.2 2.9 4 0 0 4 4 4 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|344210115|ref|YP_004786291.1| - 4.3e-22 77.6 0.4 8.5e-22 76.7 0.4 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 gi|344210116|ref|YP_004786292.1| - 5.1e-23 81.1 0.1 5.7e-23 81.0 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.22 gi|344210117|ref|YP_004786293.1| - 8.5e-35 119.8 0.0 9.6e-35 119.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS_EIIC PF02378.18 gi|344210118|ref|YP_004786294.1| - 3.7e-21 75.5 37.7 3.7e-21 75.5 37.7 1.9 2 0 0 2 2 2 2 Phosphotransferase system, EIIC Seryl_tRNA_N PF02403.22 gi|344210119|ref|YP_004786295.1| - 1.5e-06 28.4 44.9 0.0012 19.1 11.1 6.0 2 2 4 6 6 6 3 Seryl-tRNA synthetase N-terminal domain DUF812 PF05667.11 gi|344210119|ref|YP_004786295.1| - 3.7e-06 26.1 29.9 0.00013 21.0 6.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF812) Spc7 PF08317.11 gi|344210119|ref|YP_004786295.1| - 7.5e-06 25.0 49.1 0.00011 21.2 13.3 4.3 2 2 1 3 3 3 2 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|344210119|ref|YP_004786295.1| - 8.7e-06 26.0 35.9 0.29 11.6 0.2 7.0 5 2 1 6 6 6 4 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|344210119|ref|YP_004786295.1| - 1.3e-05 25.3 43.8 0.0062 16.6 12.5 4.8 2 2 2 4 4 4 2 TPR/MLP1/MLP2-like protein HMMR_N PF15905.5 gi|344210119|ref|YP_004786295.1| - 2.4e-05 24.0 33.5 0.0028 17.2 14.7 2.5 2 0 0 2 2 2 2 Hyaluronan mediated motility receptor N-terminal EzrA PF06160.12 gi|344210119|ref|YP_004786295.1| - 0.00013 20.3 34.5 0.0011 17.2 15.0 2.7 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA Atg14 PF10186.9 gi|344210119|ref|YP_004786295.1| - 0.00035 19.8 35.1 0.0015 17.7 2.4 3.7 2 2 2 4 4 4 2 Vacuolar sorting 38 and autophagy-related subunit 14 FapA PF03961.13 gi|344210119|ref|YP_004786295.1| - 0.0004 19.1 23.3 0.016 13.9 3.4 3.8 1 1 1 3 3 3 2 Flagellar Assembly Protein A GAS PF13851.6 gi|344210119|ref|YP_004786295.1| - 0.00058 19.3 36.7 0.044 13.1 11.7 3.9 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|344210119|ref|YP_004786295.1| - 0.0012 19.0 28.0 1.1 9.4 4.4 4.4 4 0 0 4 4 4 2 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|344210119|ref|YP_004786295.1| - 0.0024 18.3 33.3 2.1 8.9 2.7 7.1 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein Golgin_A5 PF09787.9 gi|344210119|ref|YP_004786295.1| - 0.0044 16.5 51.1 0.091 12.2 14.8 4.1 1 1 3 4 4 4 2 Golgin subfamily A member 5 Fez1 PF06818.15 gi|344210119|ref|YP_004786295.1| - 0.0071 16.8 42.7 1.3 9.4 18.3 3.6 1 1 2 3 3 3 2 Fez1 BLOC1_2 PF10046.9 gi|344210119|ref|YP_004786295.1| - 0.0082 16.4 32.6 3.5 8.0 0.5 6.7 3 2 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|344210119|ref|YP_004786295.1| - 0.015 14.0 31.7 0.047 12.3 14.3 2.3 1 1 1 2 2 2 0 AAA domain Baculo_PEP_C PF04513.12 gi|344210119|ref|YP_004786295.1| - 0.052 13.6 27.7 0.14 12.2 2.3 5.4 2 2 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus DivIC PF04977.15 gi|344210119|ref|YP_004786295.1| - 0.07 12.9 57.6 0.05 13.4 1.5 8.1 2 2 3 7 7 7 0 Septum formation initiator DHR10 PF18595.1 gi|344210119|ref|YP_004786295.1| - 0.11 12.6 66.7 0.022 14.8 12.8 5.6 2 2 2 4 4 4 0 Designed helical repeat protein 10 domain kleA_kleC PF17383.2 gi|344210119|ref|YP_004786295.1| - 0.11 12.8 35.6 0.036 14.4 2.8 5.7 3 2 3 6 6 6 0 Uncharacterized KorC regulated protein A TMF_TATA_bd PF12325.8 gi|344210119|ref|YP_004786295.1| - 0.14 12.4 52.3 0.32 11.2 6.9 4.8 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding HemX PF04375.14 gi|344210119|ref|YP_004786295.1| - 0.16 11.3 27.1 0.092 12.0 1.7 4.1 2 2 1 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase FUSC PF04632.12 gi|344210119|ref|YP_004786295.1| - 0.16 10.5 38.0 0.47 8.9 15.4 2.6 1 1 2 3 3 3 0 Fusaric acid resistance protein family IFT57 PF10498.9 gi|344210119|ref|YP_004786295.1| - 0.17 10.9 31.5 0.028 13.4 5.6 3.9 2 1 1 4 4 4 0 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|344210119|ref|YP_004786295.1| - 0.25 11.4 32.6 1.2 9.2 3.4 5.4 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) COG2 PF06148.11 gi|344210119|ref|YP_004786295.1| - 0.28 11.3 29.3 2.4 8.3 0.5 5.4 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_23 PF13476.6 gi|344210119|ref|YP_004786295.1| - 0.29 11.6 37.1 1.8e+04 -6.1 37.1 4.1 1 1 0 1 1 0 0 AAA domain DUF4763 PF15960.5 gi|344210119|ref|YP_004786295.1| - 0.3 10.4 29.9 1.1 8.5 0.4 4.7 3 2 2 5 5 5 0 Domain of unknown function (DUF4763) Shugoshin_N PF07558.11 gi|344210119|ref|YP_004786295.1| - 0.3 11.0 9.5 0.57 10.1 0.2 4.2 4 0 0 4 4 3 0 Shugoshin N-terminal coiled-coil region STAT_alpha PF01017.20 gi|344210119|ref|YP_004786295.1| - 0.31 10.9 28.1 1.5 8.6 4.9 3.5 2 2 1 3 3 3 0 STAT protein, all-alpha domain DUF4407 PF14362.6 gi|344210119|ref|YP_004786295.1| - 0.36 10.1 40.5 1.8 7.8 13.7 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 gi|344210119|ref|YP_004786295.1| - 0.37 11.3 64.4 0.98 9.9 7.0 5.3 2 2 3 5 5 5 0 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|344210119|ref|YP_004786295.1| - 0.39 10.7 53.1 1.9 8.5 13.5 5.6 3 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.19 gi|344210119|ref|YP_004786295.1| - 0.43 10.4 51.8 0.11 12.3 15.3 3.5 2 2 1 3 3 3 0 Ezrin/radixin/moesin family ATG16 PF08614.11 gi|344210119|ref|YP_004786295.1| - 0.43 10.8 62.0 0.06 13.6 17.5 4.3 1 1 2 4 4 4 0 Autophagy protein 16 (ATG16) Retrotrans_gag PF03732.17 gi|344210119|ref|YP_004786295.1| - 0.46 10.8 0.1 0.46 10.8 0.1 3.9 3 2 2 5 5 4 0 Retrotransposon gag protein Spectrin PF00435.21 gi|344210119|ref|YP_004786295.1| - 0.48 10.9 37.4 0.43 11.1 3.6 5.8 2 2 2 5 5 5 0 Spectrin repeat Prefoldin PF02996.17 gi|344210119|ref|YP_004786295.1| - 0.63 10.0 34.8 0.88 9.5 0.4 7.4 3 2 5 8 8 8 0 Prefoldin subunit DUF745 PF05335.13 gi|344210119|ref|YP_004786295.1| - 0.75 9.5 9.8 0.58 9.9 0.8 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF745) KASH_CCD PF14662.6 gi|344210119|ref|YP_004786295.1| - 0.77 9.6 43.0 2.6 7.8 20.7 3.6 2 2 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH TMF_DNA_bd PF12329.8 gi|344210119|ref|YP_004786295.1| - 0.82 9.7 36.3 6.1 6.9 2.0 6.0 3 2 3 6 6 6 0 TATA element modulatory factor 1 DNA binding Occludin_ELL PF07303.13 gi|344210119|ref|YP_004786295.1| - 0.85 10.4 19.2 2.4 8.9 0.4 5.3 3 2 3 6 6 6 0 Occludin homology domain MAD PF05557.13 gi|344210119|ref|YP_004786295.1| - 1.1 7.5 45.2 0.6 8.4 17.4 2.7 2 2 0 2 2 2 0 Mitotic checkpoint protein Filament PF00038.21 gi|344210119|ref|YP_004786295.1| - 1.1 8.7 53.1 2.8 7.4 7.4 3.9 2 2 1 3 3 3 0 Intermediate filament protein Zw10 PF06248.13 gi|344210119|ref|YP_004786295.1| - 1.1 7.7 22.5 0.02 13.5 4.6 3.3 2 1 1 3 3 3 0 Centromere/kinetochore Zw10 DUF4201 PF13870.6 gi|344210119|ref|YP_004786295.1| - 1.2 8.8 39.2 0.62 9.8 5.7 4.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) FliD_N PF02465.18 gi|344210119|ref|YP_004786295.1| - 1.3 9.8 9.7 55 4.5 1.5 4.8 3 2 1 4 4 3 0 Flagellar hook-associated protein 2 N-terminus DUF724 PF05266.14 gi|344210119|ref|YP_004786295.1| - 2.6 7.8 32.5 0.78 9.5 7.0 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF724) DUF3584 PF12128.8 gi|344210119|ref|YP_004786295.1| - 2.8 5.4 47.6 0.72 7.3 20.5 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) Laminin_II PF06009.12 gi|344210119|ref|YP_004786295.1| - 3.3 7.7 30.4 0.14 12.2 5.4 3.9 2 2 0 3 3 3 0 Laminin Domain II YabA PF06156.13 gi|344210119|ref|YP_004786295.1| - 3.6 8.3 32.5 3.4 8.4 1.7 5.2 2 2 3 5 5 5 0 Initiation control protein YabA DUF2203 PF09969.9 gi|344210119|ref|YP_004786295.1| - 4.5 8.0 32.9 0.27 12.0 2.0 4.8 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) LXG PF04740.12 gi|344210119|ref|YP_004786295.1| - 4.8 6.8 25.7 0.5 10.0 2.1 4.7 2 1 1 3 3 3 0 LXG domain of WXG superfamily ABC_tran_CTD PF16326.5 gi|344210119|ref|YP_004786295.1| - 5.1 7.4 51.8 9.4 6.6 0.1 7.6 3 2 5 8 8 8 0 ABC transporter C-terminal domain Sec34 PF04136.15 gi|344210119|ref|YP_004786295.1| - 5.1 7.0 24.4 4.8 7.0 3.7 4.9 2 2 2 4 4 4 0 Sec34-like family Mod_r PF07200.13 gi|344210119|ref|YP_004786295.1| - 5.2 7.2 36.5 3 7.9 6.8 4.5 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Exonuc_VII_L PF02601.15 gi|344210119|ref|YP_004786295.1| - 5.5 6.5 28.1 6.3 6.3 11.9 2.7 1 1 1 2 2 2 0 Exonuclease VII, large subunit TBK1_CCD1 PF18394.1 gi|344210119|ref|YP_004786295.1| - 5.7 6.4 24.3 0.68 9.4 5.4 3.8 2 1 1 3 3 3 0 TANK-binding kinase 1 coiled-coil domain 1 FlxA PF14282.6 gi|344210119|ref|YP_004786295.1| - 7.3 6.6 23.2 0.57 10.2 0.5 4.6 2 2 1 4 4 3 0 FlxA-like protein DUF3153 PF11353.8 gi|344210119|ref|YP_004786295.1| - 7.5 6.1 9.2 0.3 10.6 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3153) HOOK PF05622.12 gi|344210119|ref|YP_004786295.1| - 8.5 4.4 49.7 0.096 10.8 23.8 2.5 1 1 2 3 3 3 0 HOOK protein Baculo_p24 PF05073.12 gi|344210119|ref|YP_004786295.1| - 8.6 6.1 11.8 2.3 7.9 1.3 3.1 2 1 0 2 2 2 0 Baculovirus P24 capsid protein Bacillus_HBL PF05791.11 gi|344210119|ref|YP_004786295.1| - 8.6 6.1 18.9 1.4 8.7 4.6 4.1 3 1 2 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) AKNA PF12443.8 gi|344210119|ref|YP_004786295.1| - 9.1 7.0 11.8 6.4 7.5 0.2 4.3 2 2 0 4 4 2 0 AT-hook-containing transcription factor DUF4200 PF13863.6 gi|344210119|ref|YP_004786295.1| - 10 6.6 46.1 0.8 10.1 6.2 5.8 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) SCAB-ABD PF16711.5 gi|344210120|ref|YP_004786296.1| - 0.029 14.3 0.2 0.081 12.8 0.2 1.8 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein zinc_ribbon_4 PF13717.6 gi|344210120|ref|YP_004786296.1| - 0.054 13.4 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2951 PF11166.8 gi|344210122|ref|YP_004786298.1| - 0.077 13.2 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) DUF357 PF04010.13 gi|344210122|ref|YP_004786298.1| - 0.1 12.7 0.1 0.52 10.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF357) GCV_T PF01571.21 gi|344210123|ref|YP_004786299.1| - 1.2e-62 211.6 0.1 2e-62 210.9 0.1 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|344210123|ref|YP_004786299.1| - 2.2e-43 149.2 0.1 2.2e-43 149.2 0.1 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAO_M PF16350.5 gi|344210123|ref|YP_004786299.1| - 6.8e-19 67.9 0.2 2.1e-18 66.4 0.2 1.9 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain GCV_T_C PF08669.11 gi|344210123|ref|YP_004786299.1| - 1.3e-10 41.1 0.0 3.1e-10 39.8 0.0 1.7 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_2 PF07992.14 gi|344210123|ref|YP_004786299.1| - 6.7e-06 25.5 0.0 0.024 13.9 0.0 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210123|ref|YP_004786299.1| - 2e-05 24.0 0.0 0.0086 15.4 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase SoxG PF04268.12 gi|344210123|ref|YP_004786299.1| - 0.00014 22.0 0.0 0.00025 21.2 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family NAD_binding_9 PF13454.6 gi|344210123|ref|YP_004786299.1| - 0.00047 20.2 0.9 0.94 9.5 0.1 3.2 3 0 0 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|344210123|ref|YP_004786299.1| - 0.00086 19.5 0.0 0.0033 17.6 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|344210123|ref|YP_004786299.1| - 0.0019 17.3 0.1 0.0032 16.6 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|344210123|ref|YP_004786299.1| - 0.016 13.9 0.0 0.034 12.9 0.0 1.5 2 0 0 2 2 2 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|344210123|ref|YP_004786299.1| - 0.17 11.2 0.1 0.51 9.6 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ETF PF01012.21 gi|344210124|ref|YP_004786300.1| - 7.5e-32 110.7 2.2 1.1e-31 110.2 2.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|344210125|ref|YP_004786301.1| - 4.3e-33 113.2 1.0 4.3e-33 113.2 1.0 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|344210125|ref|YP_004786301.1| - 2.7e-27 95.8 2.4 3e-27 95.7 1.6 1.5 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Cupin_2 PF07883.11 gi|344210126|ref|YP_004786302.1| - 0.0012 18.5 3.6 0.0017 18.1 3.6 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 gi|344210126|ref|YP_004786302.1| - 0.025 14.5 0.1 0.051 13.5 0.1 1.5 1 1 1 2 2 2 0 ChrR Cupin-like domain FTCD_C PF04961.12 gi|344210127|ref|YP_004786303.1| - 2.8e-42 144.6 7.2 3.5e-42 144.2 7.2 1.1 1 0 0 1 1 1 1 Formiminotransferase-cyclodeaminase DUF3995 PF13160.6 gi|344210127|ref|YP_004786303.1| - 0.12 12.7 3.5 0.3 11.5 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) MccV PF17508.2 gi|344210127|ref|YP_004786303.1| - 0.23 12.0 5.1 0.14 12.7 0.7 2.2 2 0 0 2 2 2 0 Microcin V bacteriocin FTHFS PF01268.19 gi|344210128|ref|YP_004786304.1| - 7.1e-240 796.9 0.0 8e-240 796.7 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Pterin_bind PF00809.22 gi|344210129|ref|YP_004786305.1| - 2.5e-81 272.9 0.8 4.3e-81 272.2 0.8 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|344210129|ref|YP_004786305.1| - 5.6e-12 46.0 0.0 1.3e-11 44.9 0.0 1.7 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|344210129|ref|YP_004786305.1| - 1.7e-06 28.2 0.0 5.5e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain TPP_enzyme_N PF02776.18 gi|344210129|ref|YP_004786305.1| - 0.021 14.5 0.3 0.073 12.7 0.3 1.9 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FixQ PF05545.11 gi|344210130|ref|YP_004786306.1| - 0.069 13.1 0.3 0.1 12.6 0.3 1.2 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Lar_restr_allev PF14354.6 gi|344210131|ref|YP_004786307.1| - 0.0028 18.0 9.0 0.0034 17.7 0.7 2.9 2 1 1 3 3 3 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|344210131|ref|YP_004786307.1| - 0.0034 17.3 5.0 0.34 10.9 0.2 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|344210131|ref|YP_004786307.1| - 0.011 15.9 0.4 0.011 15.9 0.4 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger Zn_Tnp_IS91 PF14319.6 gi|344210131|ref|YP_004786307.1| - 0.018 15.1 0.8 0.018 15.1 0.8 1.9 2 0 0 2 2 2 0 Transposase zinc-binding domain HypA PF01155.19 gi|344210131|ref|YP_004786307.1| - 0.039 14.0 7.6 0.33 11.0 3.1 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|344210131|ref|YP_004786307.1| - 0.05 13.6 7.6 0.59 10.2 4.6 2.2 1 1 1 2 2 2 0 zinc-ribbons zf_Rg PF17915.1 gi|344210131|ref|YP_004786307.1| - 0.35 10.3 2.3 0.29 10.5 0.2 1.9 1 1 1 2 2 2 0 Reverse gyrase zinc finger IBR PF01485.21 gi|344210131|ref|YP_004786307.1| - 0.43 10.9 10.2 8.2 6.7 4.5 2.3 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_15 PF17032.5 gi|344210131|ref|YP_004786307.1| - 0.45 11.3 4.8 28 5.6 4.8 2.4 1 1 1 2 2 2 0 zinc-ribbon family DZR PF12773.7 gi|344210131|ref|YP_004786307.1| - 0.48 10.5 9.1 4.1 7.5 1.8 2.4 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|344210131|ref|YP_004786307.1| - 0.53 9.8 6.3 2.1 7.9 0.7 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|344210131|ref|YP_004786307.1| - 0.64 10.0 8.2 36 4.4 0.3 4.0 4 0 0 4 4 4 0 zinc-ribbon domain TRAF6_Z2 PF18048.1 gi|344210131|ref|YP_004786307.1| - 0.77 9.9 4.3 2.8 8.1 0.1 2.8 3 0 0 3 3 3 0 TNF receptor-associated factor 6 zinc finger 2 YacG PF03884.14 gi|344210131|ref|YP_004786307.1| - 1.2 8.9 8.8 8.9 6.1 0.6 3.5 3 1 0 3 3 3 0 DNA gyrase inhibitor YacG zf_UBZ PF18439.1 gi|344210131|ref|YP_004786307.1| - 4.1 7.1 10.4 7.2 6.3 0.1 3.9 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Anti-TRAP PF15777.5 gi|344210131|ref|YP_004786307.1| - 6.2 6.9 10.7 1.1 9.2 3.0 2.9 2 2 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C3HC4_3 PF13920.6 gi|344210131|ref|YP_004786307.1| - 6.5 6.7 9.3 9.4 6.2 0.0 3.2 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C4_Topoisom PF01396.19 gi|344210131|ref|YP_004786307.1| - 9 6.2 8.5 9.4 6.1 0.0 3.3 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger MFS_1 PF07690.16 gi|344210132|ref|YP_004786308.1| - 0.01 14.8 13.1 0.01 14.8 13.1 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily BCCT PF02028.17 gi|344210133|ref|YP_004786309.1| - 6.1e-179 595.5 45.5 7e-179 595.3 45.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Trp_oprn_chp PF09534.10 gi|344210133|ref|YP_004786309.1| - 0.53 10.1 0.0 0.53 10.1 0.0 3.2 3 0 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) TMEM72 PF16054.5 gi|344210134|ref|YP_004786310.1| - 0.099 12.3 0.3 0.1 12.3 0.3 1.0 1 0 0 1 1 1 0 Transmembrane protein family 72 Usp PF00582.26 gi|344210135|ref|YP_004786311.1| - 4.5e-30 105.0 0.0 5.5e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|344210135|ref|YP_004786311.1| - 0.0082 15.6 0.2 0.01 15.3 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PALP PF00291.25 gi|344210136|ref|YP_004786312.1| - 4.7e-78 262.6 5.7 6.4e-78 262.1 5.7 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|344210136|ref|YP_004786312.1| - 1.4e-07 31.1 0.4 1.4e-07 31.1 0.4 2.0 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|344210136|ref|YP_004786312.1| - 9.2e-06 26.2 1.0 2e-05 25.1 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|344210136|ref|YP_004786312.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain GCV_T PF01571.21 gi|344210137|ref|YP_004786313.1| - 1.9e-76 256.8 0.0 2.6e-76 256.4 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|344210137|ref|YP_004786313.1| - 2.1e-38 132.8 1.7 5.4e-38 131.5 1.5 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|344210137|ref|YP_004786313.1| - 7.4e-17 61.1 0.2 2.2e-16 59.6 0.1 1.9 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|344210137|ref|YP_004786313.1| - 3.9e-13 49.5 0.2 1e-12 48.1 0.2 1.8 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain NAD_binding_8 PF13450.6 gi|344210137|ref|YP_004786313.1| - 1.7e-05 25.0 0.1 6.8e-05 23.0 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain SoxG PF04268.12 gi|344210137|ref|YP_004786313.1| - 2.7e-05 24.3 0.0 0.00048 20.3 0.0 2.3 1 1 0 2 2 2 1 Sarcosine oxidase, gamma subunit family FAD_binding_2 PF00890.24 gi|344210137|ref|YP_004786313.1| - 5.1e-05 22.5 0.3 9.8e-05 21.6 0.3 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344210137|ref|YP_004786313.1| - 0.00019 20.7 0.1 0.0022 17.3 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344210137|ref|YP_004786313.1| - 0.00085 19.8 0.4 0.0063 17.0 0.4 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210137|ref|YP_004786313.1| - 0.001 18.4 0.1 0.02 14.2 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344210137|ref|YP_004786313.1| - 0.0014 18.3 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|344210137|ref|YP_004786313.1| - 0.0037 16.7 0.0 0.0066 15.8 0.0 1.3 1 0 0 1 1 1 1 ThiF family GMC_oxred_N PF00732.19 gi|344210137|ref|YP_004786313.1| - 0.0082 15.5 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Lycopene_cycl PF05834.12 gi|344210137|ref|YP_004786313.1| - 0.038 13.0 0.5 0.068 12.2 0.5 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein HI0933_like PF03486.14 gi|344210137|ref|YP_004786313.1| - 0.056 12.1 0.1 2.1 6.9 0.2 2.2 2 0 0 2 2 2 0 HI0933-like protein Shikimate_DH PF01488.20 gi|344210137|ref|YP_004786313.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|344210137|ref|YP_004786313.1| - 0.082 13.2 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Thi4 PF01946.17 gi|344210137|ref|YP_004786313.1| - 0.087 12.1 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.6 gi|344210137|ref|YP_004786313.1| - 0.11 12.4 0.7 9.1 6.3 0.3 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding GCV_T PF01571.21 gi|344210138|ref|YP_004786314.1| - 2.5e-81 272.9 0.1 3.6e-81 272.3 0.1 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|344210138|ref|YP_004786314.1| - 2.1e-50 172.3 0.8 4.9e-50 171.1 0.8 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|344210138|ref|YP_004786314.1| - 8e-15 54.5 0.0 2.5e-14 53.0 0.0 1.9 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|344210138|ref|YP_004786314.1| - 2.7e-13 50.0 0.4 7.5e-13 48.6 0.4 1.8 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain SoxG PF04268.12 gi|344210138|ref|YP_004786314.1| - 2.5e-06 27.7 0.0 4.8e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.6 gi|344210138|ref|YP_004786314.1| - 3.5e-05 24.0 0.1 0.00016 21.8 0.0 2.3 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|344210138|ref|YP_004786314.1| - 3.6e-05 24.2 0.3 0.0047 17.4 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344210138|ref|YP_004786314.1| - 4.1e-05 22.9 0.3 4.1e-05 22.9 0.3 2.1 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344210138|ref|YP_004786314.1| - 0.00013 21.3 0.7 0.0031 16.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|344210138|ref|YP_004786314.1| - 0.0054 17.0 0.1 0.055 13.7 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.21 gi|344210138|ref|YP_004786314.1| - 0.007 15.7 0.1 0.016 14.6 0.1 1.5 1 0 0 1 1 1 1 ThiF family Pyr_redox_3 PF13738.6 gi|344210138|ref|YP_004786314.1| - 0.016 14.5 0.6 0.3 10.3 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344210138|ref|YP_004786314.1| - 0.023 14.4 0.1 0.044 13.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|344210138|ref|YP_004786314.1| - 0.037 13.1 2.5 0.19 10.8 0.2 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 gi|344210138|ref|YP_004786314.1| - 0.046 13.1 0.0 0.084 12.2 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|344210138|ref|YP_004786314.1| - 0.049 13.6 0.4 8.1 6.4 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|344210138|ref|YP_004786314.1| - 0.066 11.9 0.2 0.74 8.4 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein AstE_AspA PF04952.14 gi|344210139|ref|YP_004786315.1| - 1.6e-41 142.3 0.1 1.8e-41 142.1 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family ATP-synt_ab_Xtn PF16886.5 gi|344210139|ref|YP_004786315.1| - 0.0016 18.3 0.0 0.0033 17.3 0.0 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension MTHFR PF02219.17 gi|344210141|ref|YP_004786317.1| - 1.6e-13 50.7 0.0 3.6e-13 49.5 0.0 1.6 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase DUF1611_N PF17396.2 gi|344210141|ref|YP_004786317.1| - 0.081 13.2 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain GcpE PF04551.14 gi|344210141|ref|YP_004786317.1| - 0.14 11.2 0.0 0.39 9.8 0.0 1.6 2 0 0 2 2 2 0 GcpE protein GCV_T PF01571.21 gi|344210142|ref|YP_004786318.1| - 4.3e-47 160.6 0.0 5.7e-47 160.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|344210142|ref|YP_004786318.1| - 0.00014 21.7 0.0 0.00034 20.5 0.0 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DHFR_1 PF00186.19 gi|344210143|ref|YP_004786319.1| - 6e-50 169.1 0.0 7.1e-50 168.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase TctA PF01970.16 gi|344210144|ref|YP_004786320.1| - 0.0032 16.3 1.9 0.0033 16.2 1.9 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Phage_holin_3_6 PF07332.11 gi|344210144|ref|YP_004786320.1| - 0.18 11.8 4.0 0.22 11.5 4.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III HTH_10 PF04967.12 gi|344210145|ref|YP_004786321.1| - 1e-16 60.4 0.0 1.7e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344210145|ref|YP_004786321.1| - 0.00032 20.6 0.0 0.00044 20.1 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|344210145|ref|YP_004786321.1| - 0.0053 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|344210145|ref|YP_004786321.1| - 0.017 14.6 0.0 0.049 13.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|344210145|ref|YP_004786321.1| - 0.077 12.7 0.0 0.69 9.6 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 MTH865 PF07747.11 gi|344210147|ref|YP_004786323.1| - 0.001 18.8 0.1 0.0012 18.6 0.1 1.1 1 0 0 1 1 1 1 MTH865-like family PA14 PF07691.12 gi|344210147|ref|YP_004786323.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.0 1 0 0 1 1 1 0 PA14 domain CN_hydrolase PF00795.22 gi|344210148|ref|YP_004786324.1| - 2.3e-38 132.0 0.0 2.8e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase MFS_1 PF07690.16 gi|344210149|ref|YP_004786325.1| - 2.8e-45 154.8 64.5 1.9e-36 125.8 41.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344210149|ref|YP_004786325.1| - 0.00011 21.3 18.3 0.013 14.4 5.0 2.3 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|344210149|ref|YP_004786325.1| - 0.84 8.4 28.6 0.023 13.6 9.0 2.5 2 1 0 2 2 2 0 Sugar (and other) transporter Aldedh PF00171.22 gi|344210150|ref|YP_004786326.1| - 5.5e-12 44.9 0.0 5.9e-12 44.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PE PF00934.20 gi|344210150|ref|YP_004786326.1| - 0.11 12.9 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 PE family IclR PF01614.18 gi|344210151|ref|YP_004786327.1| - 2.4e-32 111.5 0.0 1.6e-31 108.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344210151|ref|YP_004786327.1| - 8.7e-10 38.3 0.1 5.8e-09 35.6 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344210151|ref|YP_004786327.1| - 3.6e-05 23.6 0.4 0.00011 22.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344210151|ref|YP_004786327.1| - 7.4e-05 22.5 0.0 0.00026 20.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344210151|ref|YP_004786327.1| - 0.00015 21.6 0.0 0.00043 20.1 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|344210151|ref|YP_004786327.1| - 0.00019 21.3 0.0 0.00036 20.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344210151|ref|YP_004786327.1| - 0.0004 20.4 0.0 0.0012 18.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210151|ref|YP_004786327.1| - 0.00063 19.2 0.0 0.0016 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|344210151|ref|YP_004786327.1| - 0.0094 16.3 0.0 0.021 15.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|344210151|ref|YP_004786327.1| - 0.037 14.2 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.10 gi|344210151|ref|YP_004786327.1| - 0.064 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF742 PF05331.11 gi|344210151|ref|YP_004786327.1| - 0.085 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Diacid_rec PF05651.13 gi|344210151|ref|YP_004786327.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative sugar diacid recognition ABC_tran PF00005.27 gi|344210152|ref|YP_004786328.1| - 2.9e-32 112.0 0.0 5.1e-32 111.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|344210152|ref|YP_004786328.1| - 2.5e-10 40.4 0.1 9e-10 38.6 0.1 2.0 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|344210152|ref|YP_004786328.1| - 3e-09 37.6 0.2 2.3e-08 34.7 0.0 2.7 3 0 0 3 3 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|344210152|ref|YP_004786328.1| - 1e-06 28.8 0.0 0.051 13.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|344210152|ref|YP_004786328.1| - 1.8e-05 25.0 0.1 0.00031 21.0 0.0 2.6 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|344210152|ref|YP_004786328.1| - 2.7e-05 23.7 0.7 0.00012 21.6 0.7 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344210152|ref|YP_004786328.1| - 0.0013 19.1 0.3 0.0029 18.0 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344210152|ref|YP_004786328.1| - 0.0015 18.8 0.2 0.0038 17.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344210152|ref|YP_004786328.1| - 0.0018 18.2 0.1 0.0044 17.0 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|344210152|ref|YP_004786328.1| - 0.0029 17.6 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|344210152|ref|YP_004786328.1| - 0.011 16.0 0.4 0.12 12.6 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA_25 PF13481.6 gi|344210152|ref|YP_004786328.1| - 0.017 14.7 0.0 0.73 9.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain CysA_C_terminal PF17850.1 gi|344210152|ref|YP_004786328.1| - 0.025 15.1 3.2 0.21 12.2 0.1 3.5 4 0 0 4 4 4 0 CysA C-terminal regulatory domain AAA PF00004.29 gi|344210152|ref|YP_004786328.1| - 0.032 14.7 0.8 0.18 12.2 0.8 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|344210152|ref|YP_004786328.1| - 0.032 13.9 0.1 0.067 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344210152|ref|YP_004786328.1| - 0.067 13.7 0.0 0.19 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|344210152|ref|YP_004786328.1| - 0.079 12.2 0.1 0.35 10.1 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.16 gi|344210152|ref|YP_004786328.1| - 0.083 12.3 0.5 0.79 9.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.6 gi|344210152|ref|YP_004786328.1| - 0.089 12.9 0.7 0.18 11.9 0.7 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|344210152|ref|YP_004786328.1| - 0.093 12.6 0.6 0.51 10.2 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|344210152|ref|YP_004786328.1| - 0.094 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|344210152|ref|YP_004786328.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|344210152|ref|YP_004786328.1| - 0.12 12.9 0.4 0.37 11.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|344210152|ref|YP_004786328.1| - 0.15 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344210152|ref|YP_004786328.1| - 0.19 11.4 0.0 0.8 9.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 gi|344210152|ref|YP_004786328.1| - 0.2 12.1 0.0 0.69 10.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Creatininase PF02633.14 gi|344210153|ref|YP_004786329.1| - 8.9e-62 208.7 0.4 1e-61 208.5 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase SBP_bac_1 PF01547.25 gi|344210154|ref|YP_004786330.1| - 4.2e-41 141.9 0.1 6.1e-41 141.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|344210154|ref|YP_004786330.1| - 6.5e-37 127.9 0.0 9.4e-37 127.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|344210154|ref|YP_004786330.1| - 1.6e-05 24.4 0.1 0.14 11.6 0.2 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|344210154|ref|YP_004786330.1| - 0.0026 17.6 0.0 0.0061 16.3 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344210154|ref|YP_004786330.1| - 0.015 15.1 0.1 0.033 14.1 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|344210155|ref|YP_004786331.1| - 1.1e-20 74.1 17.1 1.1e-20 74.1 15.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344210156|ref|YP_004786332.1| - 9e-16 58.1 18.5 9e-16 58.1 18.5 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5036 PF16439.5 gi|344210157|ref|YP_004786333.1| - 0.06 13.1 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5036) MR_MLE_C PF13378.6 gi|344210158|ref|YP_004786334.1| - 7.5e-49 166.3 0.1 1e-48 165.8 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210158|ref|YP_004786334.1| - 1.7e-16 60.5 0.0 4.8e-16 59.0 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DHNA PF04038.12 gi|344210158|ref|YP_004786334.1| - 0.092 13.3 0.1 1.2 9.6 0.1 2.3 2 0 0 2 2 2 0 Dihydroneopterin aldolase adh_short_C2 PF13561.6 gi|344210159|ref|YP_004786335.1| - 3.3e-62 210.1 0.2 3.9e-62 209.9 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344210159|ref|YP_004786335.1| - 3.1e-49 167.1 0.3 3.8e-49 166.8 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344210159|ref|YP_004786335.1| - 6.4e-12 45.8 0.2 9.7e-12 45.2 0.2 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344210159|ref|YP_004786335.1| - 3.6e-05 23.3 0.2 0.0002 20.9 0.2 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|344210159|ref|YP_004786335.1| - 0.0016 18.4 0.6 0.0025 17.7 0.4 1.4 1 1 0 1 1 1 1 NAD(P)H-binding EccE PF11203.8 gi|344210159|ref|YP_004786335.1| - 0.028 14.8 1.9 0.6 10.5 0.2 2.2 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE RmlD_sub_bind PF04321.17 gi|344210159|ref|YP_004786335.1| - 0.049 12.7 0.0 0.081 12.0 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|344210159|ref|YP_004786335.1| - 0.086 12.7 0.3 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|344210159|ref|YP_004786335.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Ribonuc_L-PSP PF01042.21 gi|344210160|ref|YP_004786336.1| - 6.3e-41 139.2 0.0 6.9e-41 139.0 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HAD PF12710.7 gi|344210161|ref|YP_004786337.1| - 1.4e-10 41.9 0.2 2.1e-10 41.3 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344210161|ref|YP_004786337.1| - 3.7e-06 27.4 0.3 0.0004 20.7 0.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344210161|ref|YP_004786337.1| - 4e-05 23.8 0.5 0.0036 17.4 0.5 2.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|344210161|ref|YP_004786337.1| - 0.081 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) EamA PF00892.20 gi|344210162|ref|YP_004786338.1| - 6.8e-33 113.7 34.7 1.8e-16 60.6 19.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 gi|344210162|ref|YP_004786338.1| - 0.012 15.6 1.0 0.012 15.6 1.0 4.0 1 1 3 5 5 5 0 Positive regulator of sigma(E), RseC/MucC SDF PF00375.18 gi|344210163|ref|YP_004786339.1| - 6.4e-113 377.7 37.4 7.2e-113 377.5 37.4 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Hexapep PF00132.24 gi|344210164|ref|YP_004786340.1| - 2.3e-11 42.9 3.5 8.4e-07 28.5 2.3 2.6 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|344210164|ref|YP_004786340.1| - 8e-05 23.0 0.0 0.00015 22.1 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|344210164|ref|YP_004786340.1| - 0.0031 17.2 1.2 0.0031 17.2 1.2 2.4 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase DUF1996 PF09362.10 gi|344210164|ref|YP_004786340.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1996) zf-RING_7 PF02591.15 gi|344210165|ref|YP_004786341.1| - 0.044 14.0 1.8 0.21 11.8 0.2 2.2 2 1 0 2 2 2 0 C4-type zinc ribbon domain DUF3268 PF11672.8 gi|344210165|ref|YP_004786341.1| - 0.18 12.1 1.0 0.23 11.8 0.1 1.5 1 1 1 2 2 2 0 zinc-finger-containing domain THF_DHG_CYH_C PF02882.19 gi|344210166|ref|YP_004786342.1| - 8.4e-66 220.2 1.5 1.2e-65 219.8 1.5 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|344210166|ref|YP_004786342.1| - 6e-34 116.8 0.0 9.1e-34 116.2 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Chorismate_bind PF00425.18 gi|344210167|ref|YP_004786343.1| - 5.8e-100 334.1 0.0 1.6e-99 332.7 0.0 1.7 2 1 1 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|344210167|ref|YP_004786343.1| - 1.8e-08 34.7 0.0 4.9e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region YqgC PF17430.2 gi|344210167|ref|YP_004786343.1| - 0.047 13.8 0.1 0.14 12.3 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized YqgC-like DUF3484 PF11983.8 gi|344210167|ref|YP_004786343.1| - 0.12 13.5 0.1 0.34 12.0 0.1 1.8 1 0 0 1 1 1 0 Membrane-attachment and polymerisation-promoting switch GATase PF00117.28 gi|344210168|ref|YP_004786344.1| - 5.8e-46 156.7 0.0 6.5e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344210168|ref|YP_004786344.1| - 1.4e-07 31.5 0.8 6e-07 29.4 0.8 1.8 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.18 gi|344210168|ref|YP_004786344.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein BCCT PF02028.17 gi|344210169|ref|YP_004786345.1| - 9.4e-132 439.9 43.7 1.1e-131 439.6 43.7 1.1 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Pox_A9 PF04835.12 gi|344210169|ref|YP_004786345.1| - 0.015 15.4 1.6 0.088 13.0 0.0 2.6 2 0 0 2 2 2 0 A9 protein conserved region TrkA_N PF02254.18 gi|344210170|ref|YP_004786346.1| - 1.3e-26 93.2 2.3 2.1e-26 92.5 2.3 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|344210170|ref|YP_004786346.1| - 4.6e-14 52.1 7.5 4.6e-14 52.1 7.5 3.1 4 1 0 4 4 4 1 Ion channel Ion_trans PF00520.31 gi|344210170|ref|YP_004786346.1| - 0.0016 17.7 0.2 0.003 16.8 0.2 1.5 1 1 0 1 1 1 1 Ion transport protein tRNA-synt_2_TM PF16995.5 gi|344210170|ref|YP_004786346.1| - 0.011 15.4 8.3 0.016 14.9 7.9 1.6 1 1 0 1 1 1 0 Transmembrane region of lysyl-tRNA synthetase NAD_binding_7 PF13241.6 gi|344210170|ref|YP_004786346.1| - 0.89 10.0 3.6 0.21 12.0 0.3 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding EamA PF00892.20 gi|344210171|ref|YP_004786347.1| - 4.3e-12 46.4 19.3 4.8e-12 46.2 19.3 1.0 1 0 0 1 1 1 1 EamA-like transporter family DUF1129 PF06570.11 gi|344210171|ref|YP_004786347.1| - 3.9 6.9 8.2 4.9 6.6 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Ribonuc_L-PSP PF01042.21 gi|344210172|ref|YP_004786348.1| - 2.7e-37 127.5 0.0 3e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|344210172|ref|YP_004786348.1| - 0.013 15.6 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease DUF695 PF05117.12 gi|344210173|ref|YP_004786349.1| - 0.075 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF695) NADH_4Fe-4S PF10589.9 gi|344210174|ref|YP_004786350.1| - 4.7e-18 65.0 0.0 8.8e-18 64.2 0.0 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|344210174|ref|YP_004786350.1| - 3.9e-16 59.3 0.0 6.1e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.9 gi|344210174|ref|YP_004786350.1| - 0.012 15.5 0.0 0.39 10.6 0.0 2.7 2 0 0 2 2 2 0 SLBB domain HMA PF00403.26 gi|344210174|ref|YP_004786350.1| - 0.11 13.0 1.2 1.7 9.1 0.1 3.0 3 0 0 3 3 3 0 Heavy-metal-associated domain Molybdopterin PF00384.22 gi|344210175|ref|YP_004786351.1| - 6.2e-83 279.1 0.0 7.7e-83 278.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344210175|ref|YP_004786351.1| - 8.5e-34 115.9 0.0 1.5e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|344210175|ref|YP_004786351.1| - 1.1e-27 95.9 0.2 2.7e-27 94.6 0.2 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|344210175|ref|YP_004786351.1| - 3.4e-12 45.7 0.8 3.4e-12 45.7 0.8 2.5 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 gi|344210175|ref|YP_004786351.1| - 2.9e-09 36.8 0.1 1.1e-08 34.9 0.1 2.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 gi|344210175|ref|YP_004786351.1| - 4.9e-09 36.2 8.9 4.9e-09 36.2 8.9 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344210175|ref|YP_004786351.1| - 5.4e-09 36.5 15.2 3.6e-08 33.9 8.7 3.6 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344210175|ref|YP_004786351.1| - 3.5e-07 29.8 20.6 0.00017 21.2 1.0 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344210175|ref|YP_004786351.1| - 5.8e-06 26.2 12.2 5.9e-05 23.0 3.0 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|344210175|ref|YP_004786351.1| - 5.9e-06 27.1 5.6 0.0017 19.3 0.1 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|344210175|ref|YP_004786351.1| - 2.9e-05 24.4 8.0 2.9e-05 24.4 8.0 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344210175|ref|YP_004786351.1| - 4.4e-05 23.6 10.0 4.4e-05 23.6 10.0 3.9 2 1 3 5 5 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344210175|ref|YP_004786351.1| - 0.00016 21.7 13.2 0.00016 21.7 13.2 3.5 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|344210175|ref|YP_004786351.1| - 0.002 18.3 13.1 0.038 14.2 1.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344210175|ref|YP_004786351.1| - 0.01 15.9 2.8 0.01 15.9 2.8 4.5 5 0 0 5 5 4 0 4Fe-4S binding domain CDC48_N PF02359.18 gi|344210175|ref|YP_004786351.1| - 0.055 13.7 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain NIPSNAP PF07978.13 gi|344210175|ref|YP_004786351.1| - 0.17 12.1 0.0 0.58 10.4 0.0 1.9 1 0 0 1 1 1 0 NIPSNAP Fer4_15 PF13459.6 gi|344210175|ref|YP_004786351.1| - 0.17 12.6 18.3 0.11 13.3 3.5 4.6 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|344210175|ref|YP_004786351.1| - 0.42 11.5 16.1 0.36 11.7 1.3 3.8 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|344210175|ref|YP_004786351.1| - 0.53 10.9 15.6 2.3 8.8 4.1 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Creatininase PF02633.14 gi|344210176|ref|YP_004786352.1| - 1.5e-68 230.9 2.0 1.7e-68 230.7 2.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase CPBP PF02517.16 gi|344210177|ref|YP_004786353.1| - 5.7e-14 52.3 8.5 5.7e-14 52.3 8.5 2.8 2 1 2 4 4 4 1 CPBP intramembrane metalloprotease Peptidase_S8 PF00082.22 gi|344210178|ref|YP_004786354.1| - 3.8e-17 62.5 2.7 1.5e-15 57.3 0.0 2.7 2 1 0 2 2 2 2 Subtilase family HTH_20 PF12840.7 gi|344210179|ref|YP_004786355.1| - 3.8e-14 52.5 0.0 6.4e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210179|ref|YP_004786355.1| - 6.6e-07 29.1 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210179|ref|YP_004786355.1| - 4.2e-06 26.2 0.0 7e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344210179|ref|YP_004786355.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain GerE PF00196.19 gi|344210179|ref|YP_004786355.1| - 0.17 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|344210179|ref|YP_004786355.1| - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Ribosomal_L21p PF00829.21 gi|344210180|ref|YP_004786356.1| - 0.0039 17.4 0.6 2.2 8.6 0.0 3.3 3 0 0 3 3 3 1 Ribosomal prokaryotic L21 protein Excalibur PF05901.11 gi|344210180|ref|YP_004786356.1| - 0.0064 17.1 0.1 1.1 9.9 0.0 3.6 3 0 0 3 3 3 1 Excalibur calcium-binding domain YpM PF09144.10 gi|344210180|ref|YP_004786356.1| - 0.0081 16.3 0.2 0.19 11.9 0.1 2.4 2 0 0 2 2 2 1 Yersinia pseudo-tuberculosis mitogen RNase_II_C_S1 PF18614.1 gi|344210180|ref|YP_004786356.1| - 0.015 15.2 5.3 1.9 8.5 0.0 4.3 4 0 0 4 4 4 0 RNase II-type exonuclease C-terminal S1 domain NusG_II PF07009.11 gi|344210180|ref|YP_004786356.1| - 0.14 12.4 0.1 13 6.1 0.0 3.0 2 1 1 3 3 3 0 NusG domain II AglB_L1 PF18079.1 gi|344210180|ref|YP_004786356.1| - 1.5 9.2 6.7 1.3 9.3 0.2 3.7 4 1 0 4 4 4 0 Archaeal glycosylation protein B long peripheral domain PRC PF05239.16 gi|344210181|ref|YP_004786357.1| - 1.9e-09 37.5 0.0 2.3e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain CopD PF05425.13 gi|344210182|ref|YP_004786358.1| - 0.00014 22.2 16.5 0.0082 16.5 9.7 2.3 1 1 1 2 2 2 2 Copper resistance protein D DUF4149 PF13664.6 gi|344210182|ref|YP_004786358.1| - 0.13 12.5 9.8 0.16 12.3 6.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) Fe_dep_repress PF01325.19 gi|344210183|ref|YP_004786359.1| - 4.7e-15 55.5 0.1 6.8e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|344210183|ref|YP_004786359.1| - 1.3e-06 28.2 0.0 2.3e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210183|ref|YP_004786359.1| - 2.8e-05 24.0 0.0 4.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344210183|ref|YP_004786359.1| - 0.0002 21.2 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|344210183|ref|YP_004786359.1| - 0.0014 19.1 0.0 0.0022 18.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|344210183|ref|YP_004786359.1| - 0.0031 17.0 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rio2_N PF09202.11 gi|344210183|ref|YP_004786359.1| - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal Rrf2 PF02082.20 gi|344210183|ref|YP_004786359.1| - 0.019 15.3 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.13 gi|344210183|ref|YP_004786359.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_12 PF08461.10 gi|344210183|ref|YP_004786359.1| - 0.073 13.0 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain GntR PF00392.21 gi|344210183|ref|YP_004786359.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Topoisom_bac PF01131.20 gi|344210183|ref|YP_004786359.1| - 0.14 11.2 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase TrmB PF01978.19 gi|344210183|ref|YP_004786359.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.8 gi|344210183|ref|YP_004786359.1| - 0.19 11.8 0.0 0.55 10.3 0.0 1.7 1 1 1 2 2 2 0 HTH DNA binding domain DUF505 PF04458.12 gi|344210183|ref|YP_004786359.1| - 0.2 10.0 0.0 0.24 9.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2249 PF10006.9 gi|344210184|ref|YP_004786360.1| - 9.3e-82 268.9 16.5 9.2e-28 95.9 0.5 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) Hemerythrin PF01814.23 gi|344210185|ref|YP_004786361.1| - 8.6e-20 71.7 20.0 8.6e-20 71.7 20.0 1.7 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 gi|344210185|ref|YP_004786361.1| - 3.5e-18 65.0 1.3 4.3e-18 64.7 0.1 1.8 2 0 0 2 2 2 1 Domain of Unknown function (DUF542) CorA PF01544.18 gi|344210185|ref|YP_004786361.1| - 3e-05 23.5 6.5 3e-05 23.5 6.5 1.5 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein DUF1858 PF08984.11 gi|344210185|ref|YP_004786361.1| - 0.0073 16.5 0.0 0.15 12.3 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1858) DLP_helical PF18709.1 gi|344210185|ref|YP_004786361.1| - 0.011 15.0 2.6 0.014 14.6 1.2 1.9 1 1 1 2 2 2 0 Dynamin-like helical domain ERp29 PF07749.12 gi|344210185|ref|YP_004786361.1| - 0.021 15.7 3.1 0.058 14.3 0.4 2.5 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain DinB PF05163.12 gi|344210185|ref|YP_004786361.1| - 0.056 13.4 8.0 0.032 14.2 5.8 1.7 1 1 0 1 1 1 0 DinB family Prefoldin PF02996.17 gi|344210185|ref|YP_004786361.1| - 0.059 13.3 1.1 2.5 8.0 0.0 3.2 2 2 1 3 3 3 0 Prefoldin subunit DUF3038 PF11237.8 gi|344210185|ref|YP_004786361.1| - 0.063 13.3 0.4 0.12 12.4 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) RasGAP_C PF03836.15 gi|344210185|ref|YP_004786361.1| - 0.063 13.4 3.5 0.11 12.6 0.7 2.5 1 1 1 2 2 2 0 RasGAP C-terminus Utp12 PF04003.12 gi|344210185|ref|YP_004786361.1| - 0.092 13.1 0.4 0.32 11.3 0.0 2.1 3 0 0 3 3 3 0 Dip2/Utp12 Family SesA PF17107.5 gi|344210185|ref|YP_004786361.1| - 0.11 12.6 1.0 0.26 11.5 0.5 1.9 1 1 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Exonuc_VII_L PF02601.15 gi|344210185|ref|YP_004786361.1| - 0.12 12.0 2.9 0.21 11.2 2.9 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit SHE3 PF17078.5 gi|344210185|ref|YP_004786361.1| - 0.15 11.8 4.7 0.21 11.3 1.2 2.3 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 ImpA_N PF06812.12 gi|344210185|ref|YP_004786361.1| - 0.41 10.8 5.3 22 5.2 0.0 3.6 2 1 0 2 2 2 0 ImpA, N-terminal, type VI secretion system FapA PF03961.13 gi|344210185|ref|YP_004786361.1| - 0.58 8.7 2.5 6.7 5.2 0.9 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF1664 PF07889.12 gi|344210185|ref|YP_004786361.1| - 1.2 9.2 2.7 18 5.4 1.7 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|344210185|ref|YP_004786361.1| - 7.3 5.4 14.1 12 4.7 9.0 2.4 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF4404 PF14357.6 gi|344210185|ref|YP_004786361.1| - 7.5 7.3 15.6 1.3 9.7 5.1 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF4404) MMPL PF03176.15 gi|344210186|ref|YP_004786362.1| - 1.5 7.7 5.3 1.7 7.5 5.3 1.1 1 0 0 1 1 1 0 MMPL family TetR_C_6 PF13977.6 gi|344210187|ref|YP_004786363.1| - 5.9e-22 78.1 0.8 5.9e-22 78.1 0.8 1.7 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344210187|ref|YP_004786363.1| - 4.4e-10 39.2 0.7 8e-10 38.4 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|344210187|ref|YP_004786363.1| - 1.8e-05 25.0 0.2 5e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|344210187|ref|YP_004786363.1| - 0.013 16.2 0.0 0.027 15.1 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344210187|ref|YP_004786363.1| - 0.014 15.4 0.4 0.052 13.6 0.1 2.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HAD_2 PF13419.6 gi|344210187|ref|YP_004786363.1| - 0.016 15.3 0.3 0.061 13.4 0.3 1.8 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Sigma70_r4 PF04545.16 gi|344210187|ref|YP_004786363.1| - 0.037 13.5 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 TetR_C_17 PF17922.1 gi|344210187|ref|YP_004786363.1| - 0.064 13.4 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|344210187|ref|YP_004786363.1| - 0.087 12.9 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 gi|344210188|ref|YP_004786364.1| - 1.7e-15 57.2 2.3 1.7e-15 57.2 2.3 1.7 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344210188|ref|YP_004786364.1| - 7.9e-14 51.2 0.3 1.5e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 gi|344210188|ref|YP_004786364.1| - 0.00035 20.9 1.9 0.00075 19.8 1.9 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344210188|ref|YP_004786364.1| - 0.00047 20.2 0.8 0.00082 19.4 0.2 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|344210188|ref|YP_004786364.1| - 0.00065 20.0 0.3 0.0033 17.7 0.1 2.4 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|344210188|ref|YP_004786364.1| - 0.0018 18.3 0.1 0.008 16.3 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|344210188|ref|YP_004786364.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.8 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MatE PF01554.18 gi|344210189|ref|YP_004786365.1| - 1.3e-64 216.7 34.1 7.8e-36 123.2 16.0 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|344210189|ref|YP_004786365.1| - 0.00079 19.5 42.7 0.033 14.2 20.9 4.8 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_11 PF08241.12 gi|344210190|ref|YP_004786366.1| - 2.6e-21 76.1 0.0 1.1e-20 74.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210190|ref|YP_004786366.1| - 6.3e-20 71.7 0.0 7.8e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210190|ref|YP_004786366.1| - 7.4e-19 68.3 0.0 3.4e-18 66.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210190|ref|YP_004786366.1| - 5.9e-14 52.1 0.0 1.1e-13 51.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210190|ref|YP_004786366.1| - 1.1e-13 51.1 0.0 2.2e-13 50.1 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|344210190|ref|YP_004786366.1| - 1.4e-12 48.2 0.0 3.3e-12 47.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|344210190|ref|YP_004786366.1| - 0.00098 18.7 0.0 0.0023 17.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|344210190|ref|YP_004786366.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase PrmA PF06325.13 gi|344210190|ref|YP_004786366.1| - 0.034 13.5 0.0 0.045 13.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|344210190|ref|YP_004786366.1| - 0.068 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.6 gi|344210190|ref|YP_004786366.1| - 0.1 13.7 0.0 0.21 12.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|344210190|ref|YP_004786366.1| - 0.17 11.6 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|344210190|ref|YP_004786366.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|344210190|ref|YP_004786366.1| - 0.19 10.8 0.0 0.3 10.1 0.0 1.4 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|344210190|ref|YP_004786366.1| - 0.19 10.8 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase AIM24 PF01987.17 gi|344210191|ref|YP_004786367.1| - 3.8e-28 98.7 0.3 4.4e-28 98.4 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 PP_kinase_C_1 PF17941.1 gi|344210192|ref|YP_004786368.1| - 2.8e-69 231.9 0.0 5.3e-69 231.0 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|344210192|ref|YP_004786368.1| - 1.3e-63 213.6 0.0 1.4e-61 206.9 0.0 2.5 2 1 0 2 2 2 2 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|344210192|ref|YP_004786368.1| - 4.1e-60 202.8 0.7 6.7e-60 202.1 0.7 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|344210192|ref|YP_004786368.1| - 9.7e-36 122.4 0.1 2.7e-35 120.9 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|344210192|ref|YP_004786368.1| - 2.1e-12 47.1 0.0 1.2e-06 28.5 0.1 2.7 3 0 0 3 3 3 2 PLD-like domain Metallophos PF00149.28 gi|344210193|ref|YP_004786369.1| - 7.1e-13 49.5 0.1 1e-12 49.0 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|344210193|ref|YP_004786369.1| - 2.6e-07 31.0 0.0 6.6e-07 29.7 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF5533 PF17685.1 gi|344210195|ref|YP_004786371.1| - 0.29 11.5 2.0 0.31 11.4 2.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5533) DUF3487 PF11990.8 gi|344210195|ref|YP_004786371.1| - 3.1 7.7 5.5 4.5 7.2 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF726 PF05277.12 gi|344210196|ref|YP_004786372.1| - 2.1e-14 53.3 0.0 2.5e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF726) DUF900 PF05990.12 gi|344210196|ref|YP_004786372.1| - 6e-12 45.6 0.0 8.2e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_6 PF12697.7 gi|344210196|ref|YP_004786372.1| - 0.00044 20.9 8.8 0.00073 20.2 8.8 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Lipase PF00151.19 gi|344210196|ref|YP_004786372.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.1 1 0 0 1 1 1 0 Lipase LCAT PF02450.15 gi|344210196|ref|YP_004786372.1| - 0.036 13.2 0.0 0.045 12.9 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Tudor_4 PF18358.1 gi|344210196|ref|YP_004786372.1| - 0.096 12.3 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain CAF1A PF12253.8 gi|344210196|ref|YP_004786372.1| - 0.14 12.3 0.1 0.26 11.5 0.1 1.4 1 0 0 1 1 1 0 Chromatin assembly factor 1 subunit A Methyltransf_25 PF13649.6 gi|344210197|ref|YP_004786373.1| - 4.2e-12 46.6 0.0 6.2e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210197|ref|YP_004786373.1| - 1.6e-09 38.3 0.0 2.6e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210197|ref|YP_004786373.1| - 3e-09 36.9 0.0 7.1e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|344210197|ref|YP_004786373.1| - 1.8e-07 30.8 0.0 2.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|344210197|ref|YP_004786373.1| - 2.4e-07 30.3 0.0 3.3e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|344210197|ref|YP_004786373.1| - 2.5e-06 27.1 0.0 3.1e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|344210197|ref|YP_004786373.1| - 1.3e-05 25.0 0.0 1.7e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210197|ref|YP_004786373.1| - 0.00018 22.2 0.0 0.00034 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344210197|ref|YP_004786373.1| - 0.00025 20.7 0.0 0.00036 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|344210197|ref|YP_004786373.1| - 0.00073 19.3 0.0 0.001 18.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|344210197|ref|YP_004786373.1| - 0.0096 15.7 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|344210197|ref|YP_004786373.1| - 0.053 13.3 0.0 0.068 12.9 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|344210197|ref|YP_004786373.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PIN PF01850.21 gi|344210198|ref|YP_004786374.1| - 4.9e-10 40.0 2.9 5.6e-10 39.8 2.9 1.0 1 0 0 1 1 1 1 PIN domain COX1 PF00115.20 gi|344210200|ref|YP_004786376.1| - 7e-145 483.2 61.7 7e-145 483.2 61.7 1.6 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Cupin_2 PF07883.11 gi|344210201|ref|YP_004786377.1| - 2.1e-07 30.5 0.3 3.1e-07 30.0 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|344210201|ref|YP_004786377.1| - 0.0073 16.0 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|344210201|ref|YP_004786377.1| - 0.011 15.4 0.1 0.013 15.2 0.1 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Inhibitor_I78 PF11720.8 gi|344210201|ref|YP_004786377.1| - 0.055 13.5 0.0 0.23 11.5 0.0 1.9 1 1 1 2 2 2 0 Peptidase inhibitor I78 family Cupin_6 PF12852.7 gi|344210201|ref|YP_004786377.1| - 0.066 12.9 0.4 0.077 12.7 0.4 1.3 1 1 0 1 1 1 0 Cupin AraC_binding PF02311.19 gi|344210201|ref|YP_004786377.1| - 0.15 11.9 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Bac_luciferase PF00296.20 gi|344210202|ref|YP_004786378.1| - 2.3e-47 162.0 4.7 3.7e-47 161.3 1.7 1.9 1 1 1 2 2 2 1 Luciferase-like monooxygenase DUF2761 PF10959.8 gi|344210202|ref|YP_004786378.1| - 0.02 14.9 0.3 0.094 12.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2761) NAD_binding_10 PF13460.6 gi|344210203|ref|YP_004786379.1| - 3.5e-36 124.8 2.4 4.1e-36 124.6 2.4 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|344210203|ref|YP_004786379.1| - 2.5e-11 43.6 0.0 3.5e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|344210203|ref|YP_004786379.1| - 5.2e-09 35.5 0.0 7.1e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|344210203|ref|YP_004786379.1| - 5.7e-07 29.3 0.0 7e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.24 gi|344210203|ref|YP_004786379.1| - 6e-05 23.5 0.1 8.9e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344210203|ref|YP_004786379.1| - 0.0042 17.3 0.2 0.016 15.4 0.1 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|344210203|ref|YP_004786379.1| - 0.021 15.1 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain ADH_zinc_N PF00107.26 gi|344210203|ref|YP_004786379.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase HsbA PF12296.8 gi|344210203|ref|YP_004786379.1| - 0.067 13.6 0.5 5.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Hydrophobic surface binding protein A EamA PF00892.20 gi|344210204|ref|YP_004786380.1| - 7e-38 129.9 39.1 1.1e-19 71.0 16.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|344210204|ref|YP_004786380.1| - 0.03 13.7 8.6 0.22 10.8 4.3 2.2 2 0 0 2 2 2 0 Triose-phosphate Transporter family Aldo_ket_red PF00248.21 gi|344210205|ref|YP_004786381.1| - 8e-56 189.4 0.0 3.3e-53 180.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Peptidase_M19 PF01244.21 gi|344210206|ref|YP_004786382.1| - 0.031 13.4 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) Peptidase_M48 PF01435.18 gi|344210209|ref|YP_004786385.1| - 6.9e-39 133.7 0.0 8.6e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344210209|ref|YP_004786385.1| - 2.8e-06 26.8 0.1 6.2e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|344210209|ref|YP_004786385.1| - 0.062 13.2 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 SprT-like family PrgI PF12666.7 gi|344210209|ref|YP_004786385.1| - 4.9 7.9 8.1 19 6.0 1.7 2.3 2 0 0 2 2 2 0 PrgI family protein ADH_N PF08240.12 gi|344210210|ref|YP_004786386.1| - 2.7e-31 107.7 3.3 5.8e-31 106.6 3.3 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210210|ref|YP_004786386.1| - 4e-21 75.4 0.3 8.1e-21 74.4 0.3 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|344210210|ref|YP_004786386.1| - 5.7e-06 27.4 0.6 1.1e-05 26.6 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|344210210|ref|YP_004786386.1| - 0.082 12.8 0.0 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 N-terminal domain of oxidoreductase DUF2318 PF10080.9 gi|344210210|ref|YP_004786386.1| - 0.11 12.6 1.5 0.42 10.8 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) TOBE_2 PF08402.10 gi|344210210|ref|YP_004786386.1| - 0.99 9.6 5.2 0.56 10.4 0.3 3.0 3 1 0 3 3 3 0 TOBE domain Metallophos_2 PF12850.7 gi|344210211|ref|YP_004786387.1| - 3.2e-12 47.0 0.0 1e-05 25.8 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344210211|ref|YP_004786387.1| - 3.3e-10 40.8 0.5 2.4e-08 34.7 0.3 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase HTH_20 PF12840.7 gi|344210212|ref|YP_004786388.1| - 3.1e-06 27.2 0.1 4.8e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344210212|ref|YP_004786388.1| - 0.0029 17.4 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344210212|ref|YP_004786388.1| - 0.0082 16.0 0.1 0.017 15.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344210212|ref|YP_004786388.1| - 0.0093 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|344210212|ref|YP_004786388.1| - 0.012 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|344210212|ref|YP_004786388.1| - 0.036 13.9 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FAD-oxidase_C PF02913.19 gi|344210215|ref|YP_004786391.1| - 4e-67 226.5 0.1 9.1e-67 225.3 0.1 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|344210215|ref|YP_004786391.1| - 8.6e-39 132.4 0.2 1.9e-38 131.4 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|344210215|ref|YP_004786391.1| - 7.3e-09 36.1 3.6 1.4e-08 35.1 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|344210215|ref|YP_004786391.1| - 6e-08 33.0 4.8 1.3e-07 32.0 4.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|344210215|ref|YP_004786391.1| - 2.9e-06 27.4 0.0 0.00087 19.5 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|344210215|ref|YP_004786391.1| - 0.00016 21.7 3.3 0.0045 17.1 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344210215|ref|YP_004786391.1| - 0.00095 19.3 2.2 0.025 14.8 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|344210215|ref|YP_004786391.1| - 0.07 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_7 PF12838.7 gi|344210215|ref|YP_004786391.1| - 0.3 11.7 7.4 2.3 8.9 7.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344210215|ref|YP_004786391.1| - 0.31 11.2 5.5 0.32 11.2 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344210215|ref|YP_004786391.1| - 5.5 7.0 12.3 0.2 11.5 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344210215|ref|YP_004786391.1| - 7.9 6.7 10.4 0.6 10.3 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.14 gi|344210216|ref|YP_004786392.1| - 5.4e-102 342.2 42.9 1.6e-53 182.3 22.7 2.1 2 0 0 2 2 2 2 L-lactate permease ThuA PF06283.11 gi|344210217|ref|YP_004786393.1| - 2.9e-34 119.1 0.3 3.5e-34 118.9 0.3 1.1 1 0 0 1 1 1 1 Trehalose utilisation Pyr_redox_2 PF07992.14 gi|344210219|ref|YP_004786395.1| - 1e-18 67.6 9.8 3.1e-12 46.3 0.5 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210219|ref|YP_004786395.1| - 2.5e-12 46.7 0.3 9.4e-07 28.4 0.0 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|344210219|ref|YP_004786395.1| - 6.5e-10 38.3 0.0 8.6e-05 21.4 0.0 2.3 2 1 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|344210219|ref|YP_004786395.1| - 5.1e-09 35.8 1.0 1.4e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|344210219|ref|YP_004786395.1| - 2.5e-08 33.9 0.6 0.0012 18.6 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|344210219|ref|YP_004786395.1| - 3.1e-07 29.8 1.1 2.9e-06 26.6 0.1 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344210219|ref|YP_004786395.1| - 3.3e-05 24.0 0.0 7.7e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|344210219|ref|YP_004786395.1| - 5.7e-05 22.4 0.7 0.00031 20.0 0.1 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|344210219|ref|YP_004786395.1| - 0.00014 21.4 0.0 0.00014 21.4 0.0 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344210219|ref|YP_004786395.1| - 0.00046 19.5 0.0 0.0008 18.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|344210219|ref|YP_004786395.1| - 0.0011 19.0 0.2 0.87 9.6 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|344210219|ref|YP_004786395.1| - 0.0023 17.3 0.2 0.0034 16.7 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|344210219|ref|YP_004786395.1| - 0.0053 15.8 0.3 0.031 13.3 0.1 1.9 1 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|344210219|ref|YP_004786395.1| - 0.012 16.1 0.1 0.057 14.0 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|344210219|ref|YP_004786395.1| - 0.052 12.7 0.1 5.3 6.1 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|344210219|ref|YP_004786395.1| - 0.11 12.9 0.1 0.24 11.9 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding ADH_N PF08240.12 gi|344210220|ref|YP_004786396.1| - 6e-27 93.7 0.9 6e-27 93.7 0.9 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210220|ref|YP_004786396.1| - 2.7e-23 82.4 1.3 5e-23 81.5 1.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|344210220|ref|YP_004786396.1| - 2.1e-07 30.6 0.4 3.2e-07 30.0 0.4 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_assoc PF13823.6 gi|344210220|ref|YP_004786396.1| - 3.1e-05 23.8 0.1 3.1e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.6 gi|344210220|ref|YP_004786396.1| - 0.00031 21.8 0.1 0.00066 20.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|344210220|ref|YP_004786396.1| - 0.047 13.0 2.0 0.072 12.4 2.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peripla_BP_2 PF01497.18 gi|344210221|ref|YP_004786397.1| - 1.5e-18 67.3 0.0 1.9e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.27 gi|344210222|ref|YP_004786398.1| - 7.9e-30 104.2 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210222|ref|YP_004786398.1| - 5.3e-12 46.2 4.0 2.1e-05 24.5 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210222|ref|YP_004786398.1| - 2.2e-11 43.6 0.0 5.7e-06 25.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344210222|ref|YP_004786398.1| - 1.4e-05 24.7 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|344210222|ref|YP_004786398.1| - 6e-05 23.3 1.8 0.00098 19.4 1.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210222|ref|YP_004786398.1| - 0.00017 21.4 0.1 0.00028 20.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344210222|ref|YP_004786398.1| - 0.00021 21.5 0.1 0.001 19.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|344210222|ref|YP_004786398.1| - 0.00043 19.2 0.7 0.48 9.2 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|344210222|ref|YP_004786398.1| - 0.00049 20.5 0.4 0.00089 19.7 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|344210222|ref|YP_004786398.1| - 0.00072 20.1 0.0 0.0013 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|344210222|ref|YP_004786398.1| - 0.0021 17.8 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|344210222|ref|YP_004786398.1| - 0.0032 17.1 0.1 0.0067 16.1 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|344210222|ref|YP_004786398.1| - 0.0043 16.3 0.0 0.0079 15.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 gi|344210222|ref|YP_004786398.1| - 0.0073 16.2 0.4 0.013 15.4 0.1 1.6 2 0 0 2 2 1 1 RsgA GTPase NACHT PF05729.12 gi|344210222|ref|YP_004786398.1| - 0.0095 15.9 0.1 0.02 14.8 0.0 1.6 2 0 0 2 2 1 1 NACHT domain MMR_HSR1 PF01926.23 gi|344210222|ref|YP_004786398.1| - 0.016 15.2 0.3 0.071 13.2 0.3 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|344210222|ref|YP_004786398.1| - 0.017 15.6 0.2 0.042 14.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|344210222|ref|YP_004786398.1| - 0.018 14.4 0.2 0.43 9.9 0.2 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ATP_bind_1 PF03029.17 gi|344210222|ref|YP_004786398.1| - 0.022 14.5 0.1 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MukB PF04310.12 gi|344210222|ref|YP_004786398.1| - 0.025 14.4 0.3 0.52 10.1 0.1 2.4 2 0 0 2 2 2 0 MukB N-terminal AAA_25 PF13481.6 gi|344210222|ref|YP_004786398.1| - 0.031 13.9 0.9 0.087 12.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|344210222|ref|YP_004786398.1| - 0.035 14.2 0.0 0.087 12.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain cobW PF02492.19 gi|344210222|ref|YP_004786398.1| - 0.035 13.7 0.5 0.064 12.8 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|344210222|ref|YP_004786398.1| - 0.04 13.6 0.1 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|344210222|ref|YP_004786398.1| - 0.051 13.5 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|344210222|ref|YP_004786398.1| - 0.054 12.9 0.1 0.28 10.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Cytidylate_kin PF02224.18 gi|344210222|ref|YP_004786398.1| - 0.055 13.2 0.1 0.12 12.1 0.1 1.7 1 1 0 1 1 1 0 Cytidylate kinase RNA_helicase PF00910.22 gi|344210222|ref|YP_004786398.1| - 0.055 13.9 0.0 0.097 13.1 0.0 1.5 1 1 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|344210222|ref|YP_004786398.1| - 0.058 13.3 0.8 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|344210222|ref|YP_004786398.1| - 0.065 13.8 0.3 0.23 12.0 0.1 2.0 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|344210222|ref|YP_004786398.1| - 0.069 13.1 0.1 0.2 11.6 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|344210222|ref|YP_004786398.1| - 0.081 13.2 0.1 0.18 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|344210222|ref|YP_004786398.1| - 0.095 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|344210222|ref|YP_004786398.1| - 0.16 11.5 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|344210222|ref|YP_004786398.1| - 0.22 10.7 0.6 0.92 8.7 0.6 1.8 1 1 0 1 1 1 0 KAP family P-loop domain Rad17 PF03215.15 gi|344210222|ref|YP_004786398.1| - 0.24 11.3 0.4 0.61 10.0 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain FecCD PF01032.18 gi|344210223|ref|YP_004786399.1| - 9.1e-89 297.5 35.7 1.1e-88 297.2 35.7 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|344210223|ref|YP_004786399.1| - 0.00041 19.9 11.9 0.00041 19.9 11.9 2.4 1 1 0 2 2 2 1 ABC 3 transport family Pyr_redox_2 PF07992.14 gi|344210224|ref|YP_004786400.1| - 7.8e-07 28.6 0.0 1.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210224|ref|YP_004786400.1| - 2.7e-05 23.6 0.2 0.049 12.9 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344210224|ref|YP_004786400.1| - 0.00011 21.5 1.3 0.00065 18.9 0.1 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|344210224|ref|YP_004786400.1| - 0.00011 21.4 1.5 0.00013 21.2 0.2 1.8 2 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|344210224|ref|YP_004786400.1| - 0.0015 17.4 0.0 0.0086 14.8 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|344210224|ref|YP_004786400.1| - 0.002 18.3 0.2 0.0047 17.1 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|344210224|ref|YP_004786400.1| - 0.0023 17.4 0.8 0.0023 17.4 0.8 1.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344210224|ref|YP_004786400.1| - 0.0028 17.0 0.0 0.0058 15.9 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|344210224|ref|YP_004786400.1| - 0.0059 15.9 1.9 0.013 14.8 0.2 2.1 1 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|344210224|ref|YP_004786400.1| - 0.0094 15.6 14.2 0.022 14.4 0.9 3.2 1 1 1 3 3 3 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|344210224|ref|YP_004786400.1| - 0.068 12.2 0.8 0.23 10.5 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|344210224|ref|YP_004786400.1| - 0.31 11.0 5.7 0.76 9.8 0.4 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding RPE65 PF03055.15 gi|344210225|ref|YP_004786401.1| - 1.3e-110 370.7 0.1 1.5e-110 370.6 0.1 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein EamA PF00892.20 gi|344210226|ref|YP_004786402.1| - 1.1e-38 132.5 35.4 1.4e-20 73.8 7.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|344210226|ref|YP_004786402.1| - 0.088 12.3 5.8 0.32 10.5 1.6 2.2 1 1 1 2 2 2 0 Solute carrier family 35 zf_Rg PF17915.1 gi|344210227|ref|YP_004786403.1| - 0.43 10.0 8.9 1.1 8.8 0.6 2.9 1 1 1 2 2 2 0 Reverse gyrase zinc finger RNHCP PF12647.7 gi|344210227|ref|YP_004786403.1| - 0.45 10.5 8.0 0.1 12.6 2.3 2.3 2 1 0 2 2 2 0 RNHCP domain Methyltransf_25 PF13649.6 gi|344210228|ref|YP_004786404.1| - 1.3e-15 57.9 0.0 2.1e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210228|ref|YP_004786404.1| - 3.4e-14 53.2 0.0 5.4e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210228|ref|YP_004786404.1| - 8.9e-10 38.7 0.0 1.1e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210228|ref|YP_004786404.1| - 2.5e-09 37.1 0.1 3.1e-09 36.8 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|344210228|ref|YP_004786404.1| - 2.7e-08 33.6 0.0 4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|344210228|ref|YP_004786404.1| - 4.7e-08 33.7 0.1 7.1e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|344210228|ref|YP_004786404.1| - 0.00024 20.6 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_24 PF13578.6 gi|344210228|ref|YP_004786404.1| - 0.0044 18.0 0.1 0.008 17.2 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|344210228|ref|YP_004786404.1| - 0.0054 16.5 0.0 0.0076 16.0 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) MTS PF05175.14 gi|344210228|ref|YP_004786404.1| - 0.0077 15.8 0.0 0.0096 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|344210228|ref|YP_004786404.1| - 0.017 14.1 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|344210228|ref|YP_004786404.1| - 0.017 14.2 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme SHOCT PF09851.9 gi|344210229|ref|YP_004786405.1| - 8.7e-07 28.5 1.9 1.2e-06 28.1 1.9 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF4381 PF14316.6 gi|344210229|ref|YP_004786405.1| - 0.00027 21.2 0.3 0.00032 20.9 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) FtsL PF04999.13 gi|344210229|ref|YP_004786405.1| - 0.0015 18.4 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Cell division protein FtsL GvpG PF05120.12 gi|344210229|ref|YP_004786405.1| - 0.0016 18.4 0.6 0.0023 17.9 0.6 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.11 gi|344210229|ref|YP_004786405.1| - 0.0042 17.1 0.6 0.006 16.6 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) PIG-P PF08510.12 gi|344210229|ref|YP_004786405.1| - 0.012 15.5 0.0 0.013 15.4 0.0 1.0 1 0 0 1 1 1 0 PIG-P VbhA PF18495.1 gi|344210229|ref|YP_004786405.1| - 0.026 14.4 0.6 0.036 13.9 0.6 1.3 1 0 0 1 1 1 0 Antitoxin VbhA CdvA PF18822.1 gi|344210229|ref|YP_004786405.1| - 0.031 14.1 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DUF2681 PF10883.8 gi|344210229|ref|YP_004786405.1| - 0.04 14.3 0.1 0.048 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) TssO PF17561.2 gi|344210229|ref|YP_004786405.1| - 0.12 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssO DUF4307 PF14155.6 gi|344210229|ref|YP_004786405.1| - 0.13 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF3135 PF11333.8 gi|344210229|ref|YP_004786405.1| - 0.13 12.5 0.2 0.17 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) Pyridox_ox_2 PF12900.7 gi|344210230|ref|YP_004786406.1| - 1.9e-14 53.8 0.2 2.3e-14 53.6 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344210230|ref|YP_004786406.1| - 0.00057 20.0 0.0 0.00084 19.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.12 gi|344210230|ref|YP_004786406.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.3 1 1 0 1 1 1 0 Putative FMN-binding domain AMP-binding PF00501.28 gi|344210231|ref|YP_004786407.1| - 2.9e-48 164.5 0.0 4.2e-48 164.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Hemerythrin PF01814.23 gi|344210231|ref|YP_004786407.1| - 5.5e-09 36.7 6.6 5.5e-09 36.7 6.6 2.1 3 0 0 3 3 3 1 Hemerythrin HHE cation binding domain AsnC_trans_reg2 PF17805.1 gi|344210231|ref|YP_004786407.1| - 0.071 13.3 0.0 0.69 10.1 0.0 2.4 2 0 0 2 2 2 0 AsnC-like ligand binding domain Phage_holin_3_6 PF07332.11 gi|344210232|ref|YP_004786408.1| - 0.26 11.3 7.5 0.29 11.2 7.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DZR PF12773.7 gi|344210233|ref|YP_004786409.1| - 0.12 12.5 0.8 0.19 11.8 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|344210233|ref|YP_004786409.1| - 0.23 11.5 1.6 0.57 10.2 1.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rrf2 PF02082.20 gi|344210235|ref|YP_004786411.1| - 0.035 14.4 0.2 0.11 12.9 0.2 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|344210235|ref|YP_004786411.1| - 0.12 12.2 1.6 1 9.2 1.3 2.8 3 1 0 3 3 3 0 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210235|ref|YP_004786411.1| - 0.19 11.5 3.3 1.4 8.8 1.1 2.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Amidohydro_1 PF01979.20 gi|344210236|ref|YP_004786412.1| - 8.4e-49 166.7 0.1 9.9e-49 166.5 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210236|ref|YP_004786412.1| - 3e-19 69.9 2.6 6e-14 52.4 0.6 2.2 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|344210236|ref|YP_004786412.1| - 0.014 14.8 0.1 0.023 14.1 0.1 1.3 1 0 0 1 1 1 0 TatD related DNase Amidohydro_1 PF01979.20 gi|344210237|ref|YP_004786413.1| - 2.2e-17 63.4 0.0 4e-17 62.5 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210237|ref|YP_004786413.1| - 7.4e-06 25.7 11.8 0.012 15.1 3.5 3.1 2 1 1 3 3 3 3 Amidohydrolase family Urease_alpha PF00449.20 gi|344210237|ref|YP_004786413.1| - 0.13 12.6 0.4 0.44 10.9 0.4 1.9 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain PALP PF00291.25 gi|344210238|ref|YP_004786414.1| - 3.9e-71 239.9 0.8 4.6e-71 239.6 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Bac_luciferase PF00296.20 gi|344210239|ref|YP_004786415.1| - 3.1e-59 200.9 0.0 3.8e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3243 PF11588.8 gi|344210239|ref|YP_004786415.1| - 0.039 14.3 0.3 0.56 10.6 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3243) BPD_transp_2 PF02653.16 gi|344210240|ref|YP_004786416.1| - 6.6e-38 130.4 28.9 6.6e-38 130.4 28.9 1.5 1 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|344210241|ref|YP_004786417.1| - 1.8e-34 119.1 32.7 1.8e-34 119.1 32.7 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344210242|ref|YP_004786418.1| - 2.3e-47 160.9 0.0 5e-29 101.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|344210242|ref|YP_004786418.1| - 7.4e-10 39.1 0.9 0.00054 19.9 0.0 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344210242|ref|YP_004786418.1| - 0.012 15.4 0.6 0.03 14.0 0.0 1.9 3 0 0 3 3 3 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344210242|ref|YP_004786418.1| - 0.013 15.5 0.1 0.39 10.6 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|344210242|ref|YP_004786418.1| - 0.03 13.9 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344210242|ref|YP_004786418.1| - 0.038 13.7 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|344210242|ref|YP_004786418.1| - 0.039 13.7 0.1 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|344210242|ref|YP_004786418.1| - 0.064 13.8 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|344210242|ref|YP_004786418.1| - 0.19 11.5 0.1 0.36 10.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein Bmp PF02608.14 gi|344210243|ref|YP_004786419.1| - 4e-44 150.8 0.0 4.9e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Bmp PF02608.14 gi|344210244|ref|YP_004786420.1| - 4.1e-43 147.5 0.0 5.1e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Amidohydro_3 PF07969.11 gi|344210245|ref|YP_004786421.1| - 2.2e-26 93.4 3.2 4.1e-25 89.2 3.2 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|344210245|ref|YP_004786421.1| - 6.6e-12 45.4 0.0 1.2e-05 24.9 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Peptidase_M20 PF01546.28 gi|344210246|ref|YP_004786422.1| - 2.6e-33 115.5 0.9 6e-33 114.3 0.6 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344210246|ref|YP_004786422.1| - 1e-07 31.8 0.0 2.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|344210246|ref|YP_004786422.1| - 5.1e-06 26.3 0.0 9.1e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 Fer2_2 PF01799.20 gi|344210247|ref|YP_004786423.1| - 1.6e-29 101.8 0.0 3.3e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|344210247|ref|YP_004786423.1| - 4e-05 23.5 1.3 4e-05 23.5 1.3 3.1 3 1 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|344210247|ref|YP_004786423.1| - 0.0013 18.7 0.2 0.0025 17.8 0.2 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|344210248|ref|YP_004786424.1| - 4.3e-145 484.3 4.2 5.8e-145 483.8 4.2 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|344210248|ref|YP_004786424.1| - 1.5e-22 80.0 1.5 2.8e-22 79.1 1.5 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MarR_2 PF12802.7 gi|344210249|ref|YP_004786425.1| - 3.3e-06 26.9 0.0 6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344210249|ref|YP_004786425.1| - 0.0056 16.6 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344210249|ref|YP_004786425.1| - 0.0059 16.4 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|344210249|ref|YP_004786425.1| - 0.019 15.1 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Shadoo PF14999.6 gi|344210249|ref|YP_004786425.1| - 0.035 14.2 0.2 0.046 13.8 0.2 1.1 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective TrmB PF01978.19 gi|344210249|ref|YP_004786425.1| - 0.21 11.5 0.0 0.3 11.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|344210249|ref|YP_004786425.1| - 0.25 11.2 0.0 0.43 10.5 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit PemK_toxin PF02452.17 gi|344210250|ref|YP_004786426.1| - 0.081 13.3 0.0 0.092 13.1 0.0 1.1 1 0 0 1 1 1 0 PemK-like, MazF-like toxin of type II toxin-antitoxin system Fer2_2 PF01799.20 gi|344210251|ref|YP_004786427.1| - 9.5e-33 112.1 4.9 1e-32 112.0 0.1 2.2 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|344210251|ref|YP_004786427.1| - 1.2e-08 34.8 0.5 1.2e-08 34.8 0.5 2.5 3 2 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|344210251|ref|YP_004786427.1| - 4.8e-06 26.5 1.1 1.1e-05 25.3 0.2 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|344210251|ref|YP_004786427.1| - 0.0019 18.2 1.1 0.0084 16.1 1.1 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|344210252|ref|YP_004786428.1| - 1.2e-149 499.3 0.1 1.6e-149 498.9 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|344210252|ref|YP_004786428.1| - 3.9e-24 85.1 0.1 8.6e-24 84.0 0.1 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DrsE PF02635.15 gi|344210253|ref|YP_004786429.1| - 6.6e-31 107.1 0.0 7.4e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 gi|344210254|ref|YP_004786430.1| - 2.2e-08 34.5 0.0 2.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|344210255|ref|YP_004786431.1| - 2.5e-05 24.3 0.6 0.00019 21.5 0.6 1.9 1 1 0 1 1 1 1 DsrH like protein XdhC_C PF13478.6 gi|344210256|ref|YP_004786432.1| - 4.1e-36 124.3 1.8 3.7e-35 121.2 0.1 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|344210256|ref|YP_004786432.1| - 1.5e-17 63.5 1.4 1.5e-17 63.5 1.4 3.6 5 1 0 5 5 5 1 XdhC and CoxI family Pyr_redox PF00070.27 gi|344210256|ref|YP_004786432.1| - 0.004 17.7 1.6 0.046 14.3 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|344210256|ref|YP_004786432.1| - 0.0062 15.8 2.4 0.022 14.0 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|344210256|ref|YP_004786432.1| - 0.0093 16.2 1.7 4.4 7.6 0.0 2.7 2 0 0 2 2 2 2 TrkA-N domain 3HCDH_N PF02737.18 gi|344210256|ref|YP_004786432.1| - 0.025 14.5 1.5 0.66 9.8 0.3 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|344210256|ref|YP_004786432.1| - 0.045 13.8 1.6 0.074 13.1 0.2 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344210256|ref|YP_004786432.1| - 0.061 12.7 0.9 7 6.0 0.0 2.7 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-synt_ab_Xtn PF16886.5 gi|344210256|ref|YP_004786432.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension AIRS_C PF02769.22 gi|344210257|ref|YP_004786433.1| - 5.1e-19 68.9 0.0 9e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|344210257|ref|YP_004786433.1| - 2e-11 44.4 1.6 6e-11 42.8 1.6 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TusA PF01206.17 gi|344210258|ref|YP_004786434.1| - 1.2e-15 57.1 0.0 1.5e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|344210258|ref|YP_004786434.1| - 0.012 15.5 0.1 0.013 15.4 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) NTP_transf_3 PF12804.7 gi|344210260|ref|YP_004786436.1| - 3.9e-37 128.1 1.0 4.8e-37 127.8 1.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|344210260|ref|YP_004786436.1| - 0.012 15.5 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Ribonuc_L-PSP PF01042.21 gi|344210261|ref|YP_004786437.1| - 7.1e-38 129.3 0.1 7.9e-38 129.2 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Amidohydro_1 PF01979.20 gi|344210262|ref|YP_004786438.1| - 5.2e-67 226.6 0.2 6.2e-67 226.3 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210262|ref|YP_004786438.1| - 4.4e-11 42.9 3.2 4.5e-11 42.9 0.5 2.0 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|344210262|ref|YP_004786438.1| - 0.0024 17.3 0.0 0.004 16.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Ribosomal_S17e PF00833.18 gi|344210263|ref|YP_004786439.1| - 0.055 13.4 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal S17 NAD_synthase PF02540.17 gi|344210264|ref|YP_004786440.1| - 1.2e-46 158.8 0.0 1.5e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_Tnp_ISL3 PF13542.6 gi|344210264|ref|YP_004786440.1| - 0.026 13.9 0.1 0.074 12.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 gi|344210264|ref|YP_004786440.1| - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|344210264|ref|YP_004786440.1| - 0.13 12.1 0.1 0.34 10.8 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_31 PF13560.6 gi|344210264|ref|YP_004786440.1| - 0.22 11.9 1.4 8.7 6.8 0.1 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|344210265|ref|YP_004786441.1| - 0.046 13.7 0.7 0.082 12.9 0.7 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|344210265|ref|YP_004786441.1| - 0.44 10.3 2.0 0.51 10.1 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbon domain FlaC_arch PF05377.11 gi|344210266|ref|YP_004786442.1| - 1.1e-06 28.9 33.9 0.44 11.0 0.1 8.0 4 3 4 8 8 8 2 Flagella accessory protein C (FlaC) FliJ PF02050.16 gi|344210266|ref|YP_004786442.1| - 2.5e-06 27.7 42.5 0.0002 21.6 7.5 5.1 4 2 1 5 5 4 2 Flagellar FliJ protein TPR_MLP1_2 PF07926.12 gi|344210266|ref|YP_004786442.1| - 1.1e-05 25.5 60.0 0.043 13.9 20.2 6.0 1 1 3 5 5 5 3 TPR/MLP1/MLP2-like protein ABC_tran_CTD PF16326.5 gi|344210266|ref|YP_004786442.1| - 2.5e-05 24.4 54.4 0.031 14.5 4.2 5.7 3 1 3 6 6 6 3 ABC transporter C-terminal domain DUF2353 PF09789.9 gi|344210266|ref|YP_004786442.1| - 6.4e-05 22.5 14.6 6.4e-05 22.5 14.6 3.1 2 1 1 3 3 3 2 Uncharacterized coiled-coil protein (DUF2353) AAA_13 PF13166.6 gi|344210266|ref|YP_004786442.1| - 6.7e-05 21.8 34.4 0.28 9.8 34.1 3.6 1 1 1 2 2 2 1 AAA domain Atg14 PF10186.9 gi|344210266|ref|YP_004786442.1| - 0.0001 21.5 38.0 0.00071 18.8 11.9 3.0 2 1 1 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 SMC_N PF02463.19 gi|344210266|ref|YP_004786442.1| - 0.00011 21.8 1.2 0.094 12.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain CENP-F_leu_zip PF10473.9 gi|344210266|ref|YP_004786442.1| - 0.00016 21.7 57.2 0.025 14.6 11.0 4.8 2 2 3 5 5 5 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|344210266|ref|YP_004786442.1| - 0.00016 22.2 39.3 49 4.3 39.3 3.7 1 1 0 1 1 1 0 AAA domain Spc7 PF08317.11 gi|344210266|ref|YP_004786442.1| - 0.00018 20.5 56.0 0.024 13.5 18.6 3.7 2 2 1 3 3 3 3 Spc7 kinetochore protein DUF1664 PF07889.12 gi|344210266|ref|YP_004786442.1| - 0.00019 21.5 29.5 0.35 10.9 6.3 5.0 3 1 1 4 4 4 3 Protein of unknown function (DUF1664) GAS PF13851.6 gi|344210266|ref|YP_004786442.1| - 0.0005 19.5 45.2 0.064 12.6 3.3 4.3 3 1 1 4 4 4 3 Growth-arrest specific micro-tubule binding TolA_bind_tri PF16331.5 gi|344210266|ref|YP_004786442.1| - 0.00079 19.5 40.9 0.034 14.2 0.2 6.4 4 3 2 6 6 6 2 TolA binding protein trimerisation DUF724 PF05266.14 gi|344210266|ref|YP_004786442.1| - 0.001 18.9 8.5 0.001 18.9 8.5 4.0 2 2 2 4 4 4 1 Protein of unknown function (DUF724) NPV_P10 PF05531.12 gi|344210266|ref|YP_004786442.1| - 0.001 19.5 29.0 0.066 13.7 1.2 5.8 3 1 2 5 5 5 2 Nucleopolyhedrovirus P10 protein CorA PF01544.18 gi|344210266|ref|YP_004786442.1| - 0.0015 17.9 10.9 0.0015 17.9 10.9 4.0 1 1 3 4 4 4 1 CorA-like Mg2+ transporter protein Laminin_II PF06009.12 gi|344210266|ref|YP_004786442.1| - 0.0022 18.0 36.7 0.046 13.7 9.4 4.2 2 2 3 5 5 5 3 Laminin Domain II AAA_21 PF13304.6 gi|344210266|ref|YP_004786442.1| - 0.0028 17.5 0.5 0.0028 17.5 0.5 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system HemX PF04375.14 gi|344210266|ref|YP_004786442.1| - 0.0062 15.9 8.3 0.0062 15.9 8.3 4.1 2 2 2 4 4 4 1 HemX, putative uroporphyrinogen-III C-methyltransferase Seryl_tRNA_N PF02403.22 gi|344210266|ref|YP_004786442.1| - 0.0073 16.5 40.6 0.016 15.4 2.6 5.2 3 2 1 4 4 4 2 Seryl-tRNA synthetase N-terminal domain Alpha-2-MRAP_C PF06401.11 gi|344210266|ref|YP_004786442.1| - 0.0077 16.2 11.9 0.0077 16.2 11.9 2.5 2 1 0 2 2 2 1 Alpha-2-macroglobulin RAP, C-terminal domain DUF5082 PF16888.5 gi|344210266|ref|YP_004786442.1| - 0.0088 16.3 37.9 0.085 13.1 5.8 4.3 2 2 2 4 4 4 2 Domain of unknown function (DUF5082) Fez1 PF06818.15 gi|344210266|ref|YP_004786442.1| - 0.01 16.3 48.5 0.22 11.9 19.9 3.2 1 1 2 3 3 3 0 Fez1 TMF_TATA_bd PF12325.8 gi|344210266|ref|YP_004786442.1| - 0.011 16.0 55.8 0.05 13.8 7.1 5.4 2 2 3 5 5 3 0 TATA element modulatory factor 1 TATA binding Baculo_PEP_C PF04513.12 gi|344210266|ref|YP_004786442.1| - 0.011 15.7 26.2 0.016 15.3 3.1 4.3 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus PspA_IM30 PF04012.12 gi|344210266|ref|YP_004786442.1| - 0.014 15.0 51.3 0.23 11.0 21.1 3.2 2 2 0 2 2 2 0 PspA/IM30 family Phage_GP20 PF06810.11 gi|344210266|ref|YP_004786442.1| - 0.016 15.0 40.3 0.31 10.8 3.6 4.4 2 2 1 4 4 4 0 Phage minor structural protein GP20 Sec34 PF04136.15 gi|344210266|ref|YP_004786442.1| - 0.018 14.9 28.5 1.5 8.7 0.1 5.4 2 2 1 5 5 5 0 Sec34-like family Med14 PF08638.11 gi|344210266|ref|YP_004786442.1| - 0.022 14.2 2.1 0.39 10.1 0.1 3.2 2 1 0 3 3 3 0 Mediator complex subunit MED14 Exonuc_VII_L PF02601.15 gi|344210266|ref|YP_004786442.1| - 0.034 13.7 35.9 0.11 12.0 12.6 2.6 1 1 0 2 2 2 0 Exonuclease VII, large subunit ApbE PF02424.15 gi|344210266|ref|YP_004786442.1| - 0.035 13.6 0.3 0.035 13.6 0.3 2.0 2 1 0 2 2 2 0 ApbE family FPP PF05911.11 gi|344210266|ref|YP_004786442.1| - 0.05 11.8 40.6 0.02 13.1 18.0 2.3 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil Tropomyosin_1 PF12718.7 gi|344210266|ref|YP_004786442.1| - 0.07 13.3 57.0 1.7 8.8 11.3 4.2 2 2 0 2 2 2 0 Tropomyosin like MscS_porin PF12795.7 gi|344210266|ref|YP_004786442.1| - 0.13 11.8 64.3 0.23 11.0 25.7 4.2 2 2 0 2 2 2 0 Mechanosensitive ion channel porin domain MAD PF05557.13 gi|344210266|ref|YP_004786442.1| - 0.16 10.3 46.8 0.014 13.8 18.3 2.3 1 1 0 2 2 2 0 Mitotic checkpoint protein APG6_N PF17675.1 gi|344210266|ref|YP_004786442.1| - 0.17 12.5 67.0 1e+02 3.4 31.5 5.3 2 2 0 2 2 2 0 Apg6 coiled-coil region COG2 PF06148.11 gi|344210266|ref|YP_004786442.1| - 0.21 11.7 35.5 1.2 9.2 5.0 5.1 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.8 gi|344210266|ref|YP_004786442.1| - 0.29 8.6 53.6 0.18 9.3 47.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3584) WEMBL PF05701.11 gi|344210266|ref|YP_004786442.1| - 0.42 9.3 50.1 0.059 12.1 23.0 2.8 1 1 2 3 3 3 0 Weak chloroplast movement under blue light Filament PF00038.21 gi|344210266|ref|YP_004786442.1| - 0.67 9.5 53.0 0.11 12.1 33.8 3.3 1 1 2 3 3 3 0 Intermediate filament protein DUF745 PF05335.13 gi|344210266|ref|YP_004786442.1| - 0.77 9.5 37.0 0.023 14.4 12.8 3.5 2 2 2 4 4 4 0 Protein of unknown function (DUF745) Jnk-SapK_ap_N PF09744.9 gi|344210266|ref|YP_004786442.1| - 0.8 9.9 60.3 0.021 15.0 16.8 4.0 2 2 2 4 4 4 0 JNK_SAPK-associated protein-1 IFT57 PF10498.9 gi|344210266|ref|YP_004786442.1| - 0.85 8.5 35.4 0.11 11.4 8.9 3.9 2 1 1 4 4 4 0 Intra-flagellar transport protein 57 ATG16 PF08614.11 gi|344210266|ref|YP_004786442.1| - 0.98 9.6 64.5 0.75 10.0 28.8 4.2 2 2 0 2 2 2 0 Autophagy protein 16 (ATG16) Vac_Fusion PF02346.16 gi|344210266|ref|YP_004786442.1| - 0.99 9.1 14.4 31 4.3 0.0 4.8 3 1 1 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 DUF4201 PF13870.6 gi|344210266|ref|YP_004786442.1| - 1 9.0 39.8 3 7.6 12.7 4.5 2 2 1 4 4 4 0 Domain of unknown function (DUF4201) MCPsignal PF00015.21 gi|344210266|ref|YP_004786442.1| - 1.3 8.8 21.6 0.22 11.3 1.3 3.8 2 2 3 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DHR10 PF18595.1 gi|344210266|ref|YP_004786442.1| - 1.4 9.0 71.2 0.093 12.8 8.4 5.7 2 2 3 5 5 5 0 Designed helical repeat protein 10 domain Fib_alpha PF08702.10 gi|344210266|ref|YP_004786442.1| - 1.4 9.1 33.9 0.22 11.7 4.2 4.4 2 2 0 4 4 4 0 Fibrinogen alpha/beta chain family CALCOCO1 PF07888.11 gi|344210266|ref|YP_004786442.1| - 2 7.2 52.4 0.039 12.8 18.9 2.6 2 1 1 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like Cob_adeno_trans PF01923.18 gi|344210266|ref|YP_004786442.1| - 2.1 8.5 28.2 0.68 10.1 2.9 4.2 2 2 1 3 3 3 0 Cobalamin adenosyltransferase DUF2730 PF10805.8 gi|344210266|ref|YP_004786442.1| - 2.4 8.3 27.9 4.1 7.6 1.2 5.2 3 1 3 6 6 6 0 Protein of unknown function (DUF2730) Mod_r PF07200.13 gi|344210266|ref|YP_004786442.1| - 2.7 8.1 42.3 1.2 9.2 11.8 4.3 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein HIP1_clath_bdg PF16515.5 gi|344210266|ref|YP_004786442.1| - 3.1 8.4 53.6 2.8 8.6 10.5 4.9 2 2 3 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Prefoldin_2 PF01920.20 gi|344210266|ref|YP_004786442.1| - 3.3 7.7 51.3 1.9 8.5 4.2 7.7 3 3 4 7 7 7 0 Prefoldin subunit End3 PF12761.7 gi|344210266|ref|YP_004786442.1| - 3.5 7.7 42.6 0.26 11.4 13.6 3.4 2 1 1 3 3 3 0 Actin cytoskeleton-regulatory complex protein END3 HOOK PF05622.12 gi|344210266|ref|YP_004786442.1| - 3.5 5.6 56.4 2.2 6.3 29.5 2.8 1 1 1 2 2 2 0 HOOK protein FapA PF03961.13 gi|344210266|ref|YP_004786442.1| - 3.9 6.0 31.6 1.9 7.0 11.2 3.8 2 2 2 4 4 4 0 Flagellar Assembly Protein A DUF948 PF06103.11 gi|344210266|ref|YP_004786442.1| - 4 7.8 22.5 0.17 12.2 2.2 5.1 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|344210266|ref|YP_004786442.1| - 5.2 4.9 25.6 0.18 9.8 7.0 2.8 1 1 2 3 3 3 0 Prominin YscO-like PF16789.5 gi|344210266|ref|YP_004786442.1| - 6.1 6.8 43.0 5.3 7.0 11.0 4.4 2 2 1 3 3 3 0 YscO-like protein DUF4407 PF14362.6 gi|344210266|ref|YP_004786442.1| - 6.7 6.0 50.9 0.29 10.4 18.7 3.4 1 1 1 2 2 1 0 Domain of unknown function (DUF4407) Snapin_Pallidin PF14712.6 gi|344210266|ref|YP_004786442.1| - 6.9 7.2 35.3 7.4 7.1 2.7 4.8 3 1 0 4 4 4 0 Snapin/Pallidin FAM76 PF16046.5 gi|344210266|ref|YP_004786442.1| - 7.4 5.8 23.4 0.61 9.4 6.1 2.2 2 0 0 2 2 2 0 FAM76 protein Fzo_mitofusin PF04799.13 gi|344210266|ref|YP_004786442.1| - 7.7 6.0 27.2 3.1 7.3 1.6 5.1 3 1 2 5 5 5 0 fzo-like conserved region ApoO PF09769.9 gi|344210266|ref|YP_004786442.1| - 8.2 6.4 12.8 65 3.5 0.3 4.3 2 2 1 3 3 3 0 Apolipoprotein O BLOC1_2 PF10046.9 gi|344210266|ref|YP_004786442.1| - 8.3 6.8 33.9 6.3 7.2 2.2 5.5 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc24 PF08286.11 gi|344210266|ref|YP_004786442.1| - 9.4 6.5 52.5 0.12 12.6 4.7 7.1 2 2 3 5 5 5 0 Spc24 subunit of Ndc80 GAF_2 PF13185.6 gi|344210268|ref|YP_004786444.1| - 1.2e-46 158.4 1.2 1.2e-15 58.0 0.2 4.4 4 0 0 4 4 4 4 GAF domain BAT PF15915.5 gi|344210268|ref|YP_004786444.1| - 8.6e-38 129.7 3.3 8.6e-38 129.7 3.3 2.1 2 0 0 2 2 2 1 GAF and HTH_10 associated domain GAF PF01590.26 gi|344210268|ref|YP_004786444.1| - 4.2e-22 79.2 0.0 7.5e-07 29.9 0.0 4.5 4 0 0 4 4 4 3 GAF domain Response_reg PF00072.24 gi|344210268|ref|YP_004786444.1| - 9.4e-20 70.9 0.0 3e-19 69.2 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|344210268|ref|YP_004786444.1| - 1.9e-19 70.3 0.0 3.1e-05 24.3 0.0 4.6 4 0 0 4 4 4 3 GAF domain HTH_10 PF04967.12 gi|344210268|ref|YP_004786444.1| - 1.2e-16 60.2 0.0 4.8e-16 58.3 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain OKR_DC_1_N PF03709.15 gi|344210268|ref|YP_004786444.1| - 8.9e-06 26.0 0.1 0.00015 22.0 0.0 3.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Sigma70_r4 PF04545.16 gi|344210268|ref|YP_004786444.1| - 0.00069 19.1 0.0 0.0024 17.4 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|344210268|ref|YP_004786444.1| - 0.0036 17.1 0.0 0.0088 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|344210268|ref|YP_004786444.1| - 0.0043 17.1 0.0 0.073 13.1 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|344210268|ref|YP_004786444.1| - 0.0088 15.6 0.0 0.038 13.5 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|344210268|ref|YP_004786444.1| - 0.014 15.0 0.2 0.24 11.1 0.0 3.1 2 1 0 2 2 2 0 Sigma-70, region 4 DUF1492 PF07374.11 gi|344210268|ref|YP_004786444.1| - 0.22 11.7 2.0 22 5.3 0.0 3.1 4 0 0 4 4 3 0 Protein of unknown function (DUF1492) DUF4349 PF14257.6 gi|344210268|ref|YP_004786444.1| - 0.41 10.0 5.2 1.1 8.6 5.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) HalOD1 PF18545.1 gi|344210269|ref|YP_004786445.1| - 4.4e-24 84.5 0.4 5e-24 84.3 0.4 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4131 PF13567.6 gi|344210270|ref|YP_004786446.1| - 0.089 12.4 2.0 3 7.5 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HTH_11 PF08279.12 gi|344210270|ref|YP_004786446.1| - 0.11 12.5 0.1 0.27 11.2 0.1 1.7 1 0 0 1 1 1 0 HTH domain DUF3071 PF11268.8 gi|344210272|ref|YP_004786448.1| - 0.066 13.3 0.1 0.076 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) NTP_transferase PF00483.23 gi|344210273|ref|YP_004786449.1| - 3.1e-41 141.6 0.0 3.4e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344210273|ref|YP_004786449.1| - 2.2e-14 54.1 0.0 2.5e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|344210273|ref|YP_004786449.1| - 6.3e-06 26.1 0.0 1.8e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|344210275|ref|YP_004786451.1| - 5.5e-09 36.0 0.4 1.7e-08 34.5 0.3 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210275|ref|YP_004786451.1| - 3.9e-06 26.9 0.6 0.00048 20.1 0.6 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|344210275|ref|YP_004786451.1| - 9.9e-06 25.1 0.8 1.7e-05 24.4 0.8 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_2 PF10111.9 gi|344210275|ref|YP_004786451.1| - 2.5e-05 23.9 0.0 0.12 11.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|344210275|ref|YP_004786451.1| - 2.5e-05 24.3 0.0 3.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|344210275|ref|YP_004786451.1| - 0.0092 15.5 0.0 0.032 13.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 21 PrpR_N PF06506.11 gi|344210275|ref|YP_004786451.1| - 0.096 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator PMT PF02366.18 gi|344210276|ref|YP_004786452.1| - 0.12 12.0 0.0 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase GFO_IDH_MocA PF01408.22 gi|344210277|ref|YP_004786453.1| - 4.1e-20 72.8 0.0 6.8e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|344210277|ref|YP_004786453.1| - 0.061 13.8 0.1 0.19 12.2 0.1 1.9 1 1 0 1 1 1 0 CoA binding domain DUF1349 PF07081.11 gi|344210277|ref|YP_004786453.1| - 0.066 12.9 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) Polysacc_synt_3 PF13440.6 gi|344210278|ref|YP_004786454.1| - 4.5e-76 255.9 4.8 4.5e-76 255.9 4.8 1.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|344210278|ref|YP_004786454.1| - 9.9e-31 107.1 7.3 9.9e-31 107.1 7.3 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|344210278|ref|YP_004786454.1| - 4.7e-14 52.6 19.1 4.7e-14 52.6 19.1 3.1 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Insulin_TMD PF17870.1 gi|344210278|ref|YP_004786454.1| - 0.14 12.3 3.2 0.88 9.7 1.8 2.9 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment DUF5010_C PF18099.1 gi|344210280|ref|YP_004786456.1| - 8.3e-69 228.8 13.7 6.9e-24 84.1 0.8 3.6 3 0 0 3 3 3 3 DUF5010 C-terminal domain CBM_6 PF03422.15 gi|344210280|ref|YP_004786456.1| - 2e-52 176.8 21.8 4.2e-19 69.1 2.4 4.3 4 0 0 4 4 4 3 Carbohydrate binding module (family 6) Glyco_hydro_114 PF03537.13 gi|344210280|ref|YP_004786456.1| - 7.7e-05 22.1 3.6 0.58 9.4 0.0 3.3 3 0 0 3 3 3 3 Glycoside-hydrolase family GH114 Endotoxin_C PF03944.14 gi|344210280|ref|YP_004786456.1| - 0.00022 21.6 0.2 0.74 10.1 0.0 4.3 4 1 0 4 4 4 1 delta endotoxin TcfC PF16967.5 gi|344210280|ref|YP_004786456.1| - 0.017 14.6 0.0 5.8 6.5 0.0 3.6 3 0 0 3 3 3 0 E-set like domain Neuraminidase PF18413.1 gi|344210280|ref|YP_004786456.1| - 1.2 8.7 8.5 1.5 8.5 0.3 3.1 2 1 1 3 3 3 0 Neuraminidase-like domain NESP55 PF06390.12 gi|344210280|ref|YP_004786456.1| - 4.6 6.8 10.4 9.6 5.7 10.4 1.4 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Mtd_N PF18454.1 gi|344210281|ref|YP_004786457.1| - 0.0058 16.6 0.1 0.025 14.6 0.1 2.1 2 0 0 2 2 2 1 Major tropism determinant N-terminal domain Glycos_transf_1 PF00534.20 gi|344210283|ref|YP_004786459.1| - 1.3e-34 119.2 0.0 2e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210283|ref|YP_004786459.1| - 7.2e-31 107.4 0.0 1.3e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210283|ref|YP_004786459.1| - 4.1e-11 43.2 0.0 7.7e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210283|ref|YP_004786459.1| - 4e-09 37.1 0.0 1.7e-08 35.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210283|ref|YP_004786459.1| - 2.8e-07 30.8 0.0 5.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Sulfatase PF00884.23 gi|344210284|ref|YP_004786460.1| - 1.5e-15 57.4 0.2 1.1e-13 51.2 0.1 2.3 2 0 0 2 2 2 2 Sulfatase Phosphodiest PF01663.22 gi|344210284|ref|YP_004786460.1| - 0.0018 17.9 0.3 0.046 13.3 0.0 2.1 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|344210284|ref|YP_004786460.1| - 0.003 16.2 0.0 0.0036 16.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.26 gi|344210285|ref|YP_004786461.1| - 4.5e-27 94.9 0.1 7.2e-27 94.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210285|ref|YP_004786461.1| - 2.6e-17 63.5 0.0 3.2e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344210285|ref|YP_004786461.1| - 5.9e-11 42.4 0.0 8.5e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Rhamno_transf PF11316.8 gi|344210285|ref|YP_004786461.1| - 0.051 13.0 0.0 0.092 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative rhamnosyl transferase Atu4866 PF11512.8 gi|344210285|ref|YP_004786461.1| - 0.56 10.6 2.9 20 5.6 0.3 2.6 1 1 1 2 2 2 0 Agrobacterium tumefaciens protein Atu4866 PMT_2 PF13231.6 gi|344210286|ref|YP_004786462.1| - 0.0012 19.1 8.2 0.0012 19.1 8.2 3.2 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.9 gi|344210286|ref|YP_004786462.1| - 0.048 12.0 20.4 0.34 9.2 20.4 2.0 1 1 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein TMEM220 PF15071.6 gi|344210286|ref|YP_004786462.1| - 1.7 9.5 7.7 13 6.6 0.3 3.4 3 1 1 4 4 4 0 Transmembrane family 220, helix DUF4956 PF16316.5 gi|344210286|ref|YP_004786462.1| - 5.1 6.7 9.0 0.42 10.3 1.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4956) Tmemb_14 PF03647.13 gi|344210286|ref|YP_004786462.1| - 5.4 7.8 24.7 0.46 11.3 3.5 4.1 3 1 1 4 4 4 0 Transmembrane proteins 14C Glycos_transf_1 PF00534.20 gi|344210287|ref|YP_004786463.1| - 1.4e-32 112.6 0.0 2.4e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210287|ref|YP_004786463.1| - 9.7e-31 107.0 0.0 7.4e-30 104.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210287|ref|YP_004786463.1| - 1.8e-27 96.4 0.1 2.9e-27 95.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210287|ref|YP_004786463.1| - 4.6e-21 75.9 0.0 8.8e-21 75.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210287|ref|YP_004786463.1| - 3.1e-09 37.1 0.0 5.8e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344210287|ref|YP_004786463.1| - 5.9e-05 23.1 0.0 9.9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|344210287|ref|YP_004786463.1| - 0.0053 16.5 0.2 0.017 14.8 0.2 1.8 1 1 0 1 1 1 1 Starch synthase catalytic domain Asn_synthase PF00733.21 gi|344210288|ref|YP_004786464.1| - 1.1e-92 311.5 0.6 1.4e-92 311.2 0.6 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|344210288|ref|YP_004786464.1| - 8.2e-46 154.9 0.0 1.4e-45 154.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|344210288|ref|YP_004786464.1| - 2.4e-42 144.3 0.0 4.7e-42 143.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.13 gi|344210288|ref|YP_004786464.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF3700 PF12481.8 gi|344210288|ref|YP_004786464.1| - 0.023 14.2 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 Aluminium induced protein NAD_synthase PF02540.17 gi|344210288|ref|YP_004786464.1| - 0.18 10.9 0.0 0.33 10.0 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Glycos_transf_1 PF00534.20 gi|344210289|ref|YP_004786465.1| - 4.2e-32 111.0 0.0 7.3e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210289|ref|YP_004786465.1| - 1.4e-28 99.9 0.0 6.2e-28 97.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210289|ref|YP_004786465.1| - 1.6e-22 80.3 0.0 2.7e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210289|ref|YP_004786465.1| - 7.7e-18 65.4 0.2 3.8e-17 63.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210289|ref|YP_004786465.1| - 8.7e-06 26.1 0.0 2.2e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344210289|ref|YP_004786465.1| - 0.0013 18.8 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like NTP_transf_2 PF01909.23 gi|344210289|ref|YP_004786465.1| - 0.1 12.9 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain DUF1616 PF07760.11 gi|344210290|ref|YP_004786466.1| - 2.5e-72 243.7 3.8 2.9e-72 243.5 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Bax1-I PF01027.20 gi|344210290|ref|YP_004786466.1| - 0.0071 16.2 3.6 0.0071 16.2 3.6 1.7 1 1 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF1129 PF06570.11 gi|344210290|ref|YP_004786466.1| - 0.022 14.3 0.7 0.037 13.5 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) TMEM132D_C PF15706.5 gi|344210290|ref|YP_004786466.1| - 0.21 11.4 1.4 9 6.2 0.3 3.3 3 1 1 4 4 4 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term 7TMR-DISM_7TM PF07695.11 gi|344210290|ref|YP_004786466.1| - 7.4 6.4 8.7 1.6 8.6 4.6 1.9 2 1 0 2 2 2 0 7TM diverse intracellular signalling Glycos_transf_2 PF00535.26 gi|344210291|ref|YP_004786467.1| - 4.7e-18 65.6 0.2 3.8e-16 59.4 0.2 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210291|ref|YP_004786467.1| - 4.4e-05 23.5 0.1 0.053 13.4 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|344210291|ref|YP_004786467.1| - 0.0023 18.4 0.0 0.0078 16.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 CARDB PF07705.11 gi|344210292|ref|YP_004786468.1| - 1.2e-14 54.4 24.7 5e-05 23.5 0.3 4.5 4 0 0 4 4 4 4 CARDB Fn3-like PF14310.6 gi|344210292|ref|YP_004786468.1| - 0.00022 21.3 3.4 1 9.6 0.0 4.7 5 1 0 5 5 5 2 Fibronectin type III-like domain Cupredoxin_1 PF13473.6 gi|344210292|ref|YP_004786468.1| - 0.00047 20.2 1.1 1.9 8.6 0.0 4.8 3 3 1 5 5 5 1 Cupredoxin-like domain DUF4832 PF16116.5 gi|344210292|ref|YP_004786468.1| - 0.00048 20.0 6.1 0.69 9.7 0.0 3.6 3 1 0 3 3 3 2 Domain of unknown function (DUF4832) A2M PF00207.22 gi|344210292|ref|YP_004786468.1| - 0.0037 17.1 1.3 4 7.3 0.0 3.7 3 0 0 3 3 3 2 Alpha-2-macroglobulin family DUF1616 PF07760.11 gi|344210292|ref|YP_004786468.1| - 0.007 15.8 0.2 0.007 15.8 0.2 4.2 3 1 3 6 6 6 1 Protein of unknown function (DUF1616) DUF3872 PF12988.7 gi|344210292|ref|YP_004786468.1| - 0.041 13.7 0.5 11 5.8 0.0 4.0 4 1 0 4 4 4 0 Domain of unknown function, B. Theta Gene description (DUF3872) N_BRCA1_IG PF16158.5 gi|344210292|ref|YP_004786468.1| - 0.13 13.0 2.5 0.77 10.5 0.1 3.4 4 1 1 5 5 5 0 Ig-like domain from next to BRCA1 gene Big_7 PF17957.1 gi|344210292|ref|YP_004786468.1| - 1.2 9.9 36.9 0.3 11.9 4.2 5.0 5 0 0 5 5 5 0 Bacterial Ig domain Dicty_REP PF05086.12 gi|344210292|ref|YP_004786468.1| - 2.5 6.0 4.4 4.4 5.2 4.4 1.3 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Ig_GlcNase PF18368.1 gi|344210292|ref|YP_004786468.1| - 5.1 7.3 7.1 3.5 7.8 0.0 3.6 3 1 1 4 4 4 0 Exo-beta-D-glucosaminidase Ig-fold domain HTH_45 PF14947.6 gi|344210293|ref|YP_004786469.1| - 0.00038 20.4 0.0 0.00038 20.4 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Replic_Relax PF13814.6 gi|344210293|ref|YP_004786469.1| - 0.0043 17.1 0.0 0.0043 17.1 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation DUF4364 PF14277.6 gi|344210293|ref|YP_004786469.1| - 0.0096 15.7 0.0 0.01 15.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|344210293|ref|YP_004786469.1| - 0.025 15.1 0.1 0.03 14.8 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|344210293|ref|YP_004786469.1| - 0.04 13.9 0.1 0.045 13.7 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.14 gi|344210293|ref|YP_004786469.1| - 0.051 13.5 0.0 0.053 13.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Trp_oprn_chp PF09534.10 gi|344210294|ref|YP_004786470.1| - 0.05 13.4 0.1 0.08 12.7 0.1 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HTH_20 PF12840.7 gi|344210294|ref|YP_004786470.1| - 0.065 13.3 0.0 0.17 12.0 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain TMEM232 PF15877.5 gi|344210294|ref|YP_004786470.1| - 0.087 11.8 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein family 232 DUF3040 PF11239.8 gi|344210294|ref|YP_004786470.1| - 0.099 12.9 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2892 PF11127.8 gi|344210294|ref|YP_004786470.1| - 3.6 7.7 7.7 6.3 6.9 7.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Amidohydro_3 PF07969.11 gi|344210295|ref|YP_004786471.1| - 4.4e-10 39.6 0.7 0.00014 21.5 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|344210295|ref|YP_004786471.1| - 0.00012 21.5 0.6 0.0025 17.2 0.0 2.9 2 1 0 2 2 2 1 Amidohydrolase family GFO_IDH_MocA PF01408.22 gi|344210296|ref|YP_004786472.1| - 8.4e-21 75.0 0.0 1.8e-20 74.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|344210296|ref|YP_004786472.1| - 0.012 15.6 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Hydrolase_6 PF13344.6 gi|344210297|ref|YP_004786473.1| - 3.4e-23 81.7 0.0 2.8e-22 78.7 0.0 2.4 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.28 gi|344210297|ref|YP_004786473.1| - 4e-16 59.3 0.1 6.8e-16 58.5 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.6 gi|344210297|ref|YP_004786473.1| - 1.5e-14 53.8 0.2 3.3e-14 52.7 0.2 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|344210297|ref|YP_004786473.1| - 2.5e-10 41.0 1.0 9.9e-10 39.0 0.9 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344210297|ref|YP_004786473.1| - 0.00044 20.4 0.0 0.0026 17.9 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Peripla_BP_2 PF01497.18 gi|344210299|ref|YP_004786475.1| - 5.7e-10 39.2 0.0 1.1e-09 38.2 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein TmoB PF06234.12 gi|344210299|ref|YP_004786475.1| - 0.15 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Toluene-4-monooxygenase system protein B (TmoB) MarR_2 PF12802.7 gi|344210300|ref|YP_004786476.1| - 7.4e-08 32.2 0.1 2e-07 30.8 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210300|ref|YP_004786476.1| - 3.7e-07 30.0 0.0 7.1e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|344210300|ref|YP_004786476.1| - 0.00011 21.9 0.0 0.00027 20.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|344210300|ref|YP_004786476.1| - 0.0004 20.0 0.0 0.00087 18.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|344210300|ref|YP_004786476.1| - 0.00044 19.7 0.0 0.00072 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344210300|ref|YP_004786476.1| - 0.0005 19.9 0.1 0.00087 19.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|344210300|ref|YP_004786476.1| - 0.0015 18.5 0.4 0.0027 17.6 0.3 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain RepL PF05732.11 gi|344210300|ref|YP_004786476.1| - 0.0034 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.12 gi|344210300|ref|YP_004786476.1| - 0.0077 16.2 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain TBPIP PF07106.13 gi|344210300|ref|YP_004786476.1| - 0.0085 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_DeoR PF08220.12 gi|344210300|ref|YP_004786476.1| - 0.0093 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|344210300|ref|YP_004786476.1| - 0.01 15.8 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_27 PF13463.6 gi|344210300|ref|YP_004786476.1| - 0.011 16.2 0.0 0.026 15.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|344210300|ref|YP_004786476.1| - 0.014 15.3 0.0 0.038 13.9 0.0 1.8 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|344210300|ref|YP_004786476.1| - 0.015 15.2 0.0 0.044 13.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain 7TM-7TMR_HD PF07698.11 gi|344210300|ref|YP_004786476.1| - 0.02 14.7 0.6 0.028 14.2 0.6 1.3 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase HTH_20 PF12840.7 gi|344210300|ref|YP_004786476.1| - 0.026 14.6 0.2 0.097 12.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|344210300|ref|YP_004786476.1| - 0.079 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor RNA_pol_Rpc34 PF05158.12 gi|344210300|ref|YP_004786476.1| - 0.082 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Trp_repressor PF01371.19 gi|344210300|ref|YP_004786476.1| - 0.084 13.0 0.1 0.23 11.6 0.1 1.7 2 0 0 2 2 2 0 Trp repressor protein DUF4367 PF14285.6 gi|344210302|ref|YP_004786478.1| - 0.0026 18.2 0.0 0.0087 16.5 0.0 1.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) Pap_E4 PF02711.14 gi|344210302|ref|YP_004786478.1| - 2.3 9.2 4.1 10 7.1 1.8 2.5 2 0 0 2 2 2 0 E4 protein Oxidored_q6 PF01058.22 gi|344210303|ref|YP_004786479.1| - 7.7e-22 77.5 0.1 1.1e-21 77.1 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HTH_10 PF04967.12 gi|344210304|ref|YP_004786480.1| - 5.5e-17 61.3 0.0 8.7e-17 60.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.27 gi|344210304|ref|YP_004786480.1| - 0.0028 17.6 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|344210304|ref|YP_004786480.1| - 0.003 17.4 0.1 0.0072 16.2 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344210304|ref|YP_004786480.1| - 0.003 17.6 0.0 0.024 14.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344210304|ref|YP_004786480.1| - 0.0041 16.8 0.0 0.014 15.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|344210304|ref|YP_004786480.1| - 0.0056 16.2 0.0 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|344210304|ref|YP_004786480.1| - 0.0058 16.4 0.0 0.021 14.6 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344210304|ref|YP_004786480.1| - 0.015 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|344210304|ref|YP_004786480.1| - 0.024 14.4 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|344210304|ref|YP_004786480.1| - 0.055 13.7 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|344210304|ref|YP_004786480.1| - 0.09 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Cdc6_C PF09079.11 gi|344210306|ref|YP_004794626.1| - 1.2e-23 82.9 0.0 2.8e-23 81.7 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|344210306|ref|YP_004794626.1| - 1.5e-11 45.0 0.0 1.5e-11 45.0 0.0 2.3 3 0 0 3 3 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344210306|ref|YP_004794626.1| - 6e-09 36.3 0.7 5e-07 30.1 0.7 2.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344210306|ref|YP_004794626.1| - 2.8e-08 34.2 0.8 5.9e-06 26.7 0.8 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|344210306|ref|YP_004794626.1| - 0.00082 19.4 2.3 0.0015 18.5 0.9 2.1 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|344210306|ref|YP_004794626.1| - 0.0012 18.2 0.3 0.0089 15.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein AAA_2 PF07724.14 gi|344210306|ref|YP_004794626.1| - 0.0013 18.8 0.0 0.01 15.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|344210306|ref|YP_004794626.1| - 0.0021 17.3 0.0 0.0051 16.0 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|344210306|ref|YP_004794626.1| - 0.0033 17.2 0.0 0.0078 15.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|344210306|ref|YP_004794626.1| - 0.0052 16.5 0.1 0.02 14.6 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|344210306|ref|YP_004794626.1| - 0.0054 15.8 0.0 0.0097 15.0 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|344210306|ref|YP_004794626.1| - 0.011 16.2 0.1 0.046 14.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|344210306|ref|YP_004794626.1| - 0.023 14.6 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|344210306|ref|YP_004794626.1| - 0.028 13.6 0.0 0.048 12.8 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain KAP_NTPase PF07693.14 gi|344210306|ref|YP_004794626.1| - 0.036 13.3 0.3 0.18 11.0 0.3 2.0 1 1 0 1 1 1 0 KAP family P-loop domain BLOC1_2 PF10046.9 gi|344210306|ref|YP_004794626.1| - 0.057 13.7 3.4 0.15 12.4 1.2 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_assoc_2 PF16193.5 gi|344210306|ref|YP_004794626.1| - 0.059 13.7 0.3 0.21 12.0 0.3 1.9 1 0 0 1 1 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|344210306|ref|YP_004794626.1| - 0.065 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DNA_pol3_delta2 PF13177.6 gi|344210306|ref|YP_004794626.1| - 0.066 13.0 0.0 0.31 10.8 0.0 2.0 2 0 0 2 2 2 0 DNA polymerase III, delta subunit ABC_tran PF00005.27 gi|344210306|ref|YP_004794626.1| - 0.073 13.6 0.0 0.2 12.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter AAA_lid_10 PF17872.1 gi|344210306|ref|YP_004794626.1| - 0.079 13.1 0.0 0.87 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA lid domain DUF1759 PF03564.15 gi|344210306|ref|YP_004794626.1| - 0.1 12.5 0.4 0.32 10.9 0.4 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1759) TsaE PF02367.17 gi|344210306|ref|YP_004794626.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|344210306|ref|YP_004794626.1| - 0.11 12.5 0.7 2.3 8.1 0.2 3.0 2 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|344210306|ref|YP_004794626.1| - 0.16 12.3 0.0 0.45 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|344210306|ref|YP_004794626.1| - 0.27 10.9 2.2 0.92 9.2 2.2 2.0 1 1 0 1 1 1 0 AAA domain MutS_III PF05192.18 gi|344210306|ref|YP_004794626.1| - 0.59 10.3 4.3 1.9 8.7 4.3 1.9 1 1 0 1 1 1 0 MutS domain III DEAD PF00270.29 gi|344210306|ref|YP_004794626.1| - 0.62 9.8 4.1 13 5.5 2.7 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase DUF3422 PF11902.8 gi|344210306|ref|YP_004794626.1| - 4.1 6.4 6.4 7.9 5.5 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) Peptidase_S24 PF00717.23 gi|344210307|ref|YP_004794627.1| - 8.5e-06 25.6 0.4 2.3e-05 24.2 0.4 1.7 1 1 0 1 1 1 1 Peptidase S24-like Peptidase_S24 PF00717.23 gi|344210308|ref|YP_004794628.1| - 2.6e-07 30.5 0.2 5.4e-07 29.5 0.2 1.5 1 1 0 1 1 1 1 Peptidase S24-like Metallophos PF00149.28 gi|344210309|ref|YP_004794629.1| - 5.8e-12 46.5 0.8 1e-11 45.8 0.8 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DNA_pol_E_B PF04042.16 gi|344210309|ref|YP_004794629.1| - 3.7e-11 42.8 0.0 5.7e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|344210309|ref|YP_004794629.1| - 7.9e-11 42.4 3.6 2.2e-10 41.0 3.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Colicin_M PF14859.6 gi|344210309|ref|YP_004794629.1| - 0.056 12.5 0.1 0.09 11.9 0.1 1.2 1 0 0 1 1 1 0 Colicin M DUF1249 PF06853.12 gi|344210309|ref|YP_004794629.1| - 0.15 12.1 0.1 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) Cys_Met_Meta_PP PF01053.20 gi|344210310|ref|YP_004794630.1| - 1.6e-134 448.3 0.0 1.8e-134 448.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|344210310|ref|YP_004794630.1| - 7.8e-07 28.6 0.0 1.1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|344210310|ref|YP_004794630.1| - 1e-05 25.1 0.1 1.7e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|344210310|ref|YP_004794630.1| - 0.00061 18.9 0.2 0.0012 17.9 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V SepSecS PF05889.13 gi|344210310|ref|YP_004794630.1| - 0.12 11.0 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS RalF_SCD PF18248.1 gi|344210310|ref|YP_004794630.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 RalF C-terminal Sec-7 capping domain HAD PF12710.7 gi|344210311|ref|YP_004794631.1| - 4.6e-22 79.3 0.3 5.6e-22 79.0 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344210311|ref|YP_004794631.1| - 3.9e-13 50.2 8.2 3e-11 44.0 3.2 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|344210311|ref|YP_004794631.1| - 7.8e-09 35.6 0.3 5.9e-05 22.9 0.1 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344210311|ref|YP_004794631.1| - 1.6e-06 28.3 0.1 1.2e-05 25.5 0.0 2.2 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|344210311|ref|YP_004794631.1| - 0.00079 18.9 0.0 0.0086 15.5 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase DUF4392 PF14336.6 gi|344210311|ref|YP_004794631.1| - 0.015 14.7 1.2 2.6 7.4 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) Hydrolase_6 PF13344.6 gi|344210311|ref|YP_004794631.1| - 0.028 14.5 0.0 0.13 12.4 0.0 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|344210311|ref|YP_004794631.1| - 0.17 11.4 0.0 0.23 10.9 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Helicase_C_2 PF13307.6 gi|344210313|ref|YP_004794633.1| - 4.3e-29 101.9 0.0 1e-28 100.7 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|344210313|ref|YP_004794633.1| - 4.1e-18 65.6 0.1 4.5e-17 62.2 0.1 2.5 2 1 0 2 2 2 1 DEAD_2 DEAD PF00270.29 gi|344210313|ref|YP_004794633.1| - 3.3e-09 36.8 0.1 8.1e-07 29.0 0.0 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|344210313|ref|YP_004794633.1| - 9.6e-06 25.7 0.0 0.00063 19.8 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF4456 PF14644.6 gi|344210313|ref|YP_004794633.1| - 0.00043 20.0 0.4 0.14 11.9 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4456) ATPase PF06745.13 gi|344210313|ref|YP_004794633.1| - 0.0029 17.0 0.0 0.0052 16.2 0.0 1.5 1 0 0 1 1 1 1 KaiC Zot PF05707.12 gi|344210313|ref|YP_004794633.1| - 0.0079 15.9 0.1 2.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) HBB PF06777.11 gi|344210313|ref|YP_004794633.1| - 0.025 14.3 0.0 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 Helical and beta-bridge domain AAA_34 PF13872.6 gi|344210313|ref|YP_004794633.1| - 0.047 12.6 0.0 0.098 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA PF00004.29 gi|344210313|ref|YP_004794633.1| - 0.05 14.0 0.1 6.2 7.3 0.1 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|344210313|ref|YP_004794633.1| - 0.054 12.4 0.1 0.13 11.2 0.1 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF2075 PF09848.9 gi|344210313|ref|YP_004794633.1| - 0.086 12.1 0.1 3.4 6.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) HCMV_UL139 PF12507.8 gi|344210313|ref|YP_004794633.1| - 0.35 11.3 4.1 0.47 10.9 0.2 2.8 3 0 0 3 3 3 0 Human Cytomegalovirus UL139 protein CENP-H PF05837.12 gi|344210313|ref|YP_004794633.1| - 0.76 10.2 4.6 0.31 11.4 0.9 2.1 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Cation_efflux PF01545.21 gi|344210315|ref|YP_004794635.1| - 2.7e-32 112.1 2.0 4.1e-32 111.5 2.0 1.3 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|344210315|ref|YP_004794635.1| - 2.3e-05 24.4 0.0 4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DsbD_2 PF13386.6 gi|344210315|ref|YP_004794635.1| - 0.073 13.0 0.1 0.073 13.0 0.1 1.7 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Metallophos_2 PF12850.7 gi|344210316|ref|YP_004794636.1| - 2.3e-25 89.7 2.0 2.8e-25 89.4 2.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344210316|ref|YP_004794636.1| - 0.00091 19.8 6.9 0.092 13.2 0.7 2.4 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|344210316|ref|YP_004794636.1| - 0.013 14.8 0.0 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily HTH_20 PF12840.7 gi|344210317|ref|YP_004794637.1| - 3.3e-14 52.7 0.1 5.6e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210317|ref|YP_004794637.1| - 4.7e-05 23.2 0.0 7.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210317|ref|YP_004794637.1| - 5.6e-05 22.6 0.0 9.7e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344210317|ref|YP_004794637.1| - 0.00026 20.8 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344210317|ref|YP_004794637.1| - 0.011 15.6 0.0 0.047 13.6 0.0 1.9 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|344210317|ref|YP_004794637.1| - 0.062 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.20 gi|344210317|ref|YP_004794637.1| - 0.11 12.9 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator ATP-synt_J PF04911.12 gi|344210317|ref|YP_004794637.1| - 0.82 9.3 4.9 11 5.6 0.0 2.4 2 0 0 2 2 2 0 ATP synthase j chain FtsH_ext PF06480.15 gi|344210318|ref|YP_004794638.1| - 0.12 12.8 0.2 0.12 12.8 0.2 1.0 1 0 0 1 1 1 0 FtsH Extracellular Peptidase_M29 PF02073.15 gi|344210319|ref|YP_004794639.1| - 5.4e-68 229.6 0.1 6.3e-68 229.4 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) YccF PF03733.13 gi|344210320|ref|YP_004794640.1| - 1.4e-09 38.5 27.2 1.6e-05 25.5 10.0 2.1 2 0 0 2 2 2 2 Inner membrane component domain E1-E2_ATPase PF00122.20 gi|344210320|ref|YP_004794640.1| - 1.4 8.4 4.8 13 5.3 0.7 2.0 2 0 0 2 2 2 0 E1-E2 ATPase DUF21 PF01595.20 gi|344210321|ref|YP_004794641.1| - 1.1e-41 142.5 4.8 1.3e-41 142.2 4.8 1.0 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain DZR PF12773.7 gi|344210322|ref|YP_004794642.1| - 0.0018 18.2 2.5 0.0027 17.7 2.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344210322|ref|YP_004794642.1| - 0.0077 15.9 1.7 0.011 15.4 1.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DUF2157 PF09925.9 gi|344210323|ref|YP_004794643.1| - 0.018 14.9 17.9 0.14 12.0 17.9 2.0 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF4131 PF13567.6 gi|344210323|ref|YP_004794643.1| - 3.3 7.3 13.3 1 9.0 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Radical_SAM PF04055.21 gi|344210324|ref|YP_004794644.1| - 1.6e-05 25.3 0.7 0.00075 19.9 0.6 2.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|344210324|ref|YP_004794644.1| - 0.0028 17.8 0.0 0.0048 17.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PASTA PF03793.19 gi|344210324|ref|YP_004794644.1| - 0.13 12.1 0.0 0.62 9.9 0.0 2.2 2 0 0 2 2 2 0 PASTA domain TetR_C_1 PF02909.17 gi|344210324|ref|YP_004794644.1| - 0.15 11.8 0.3 2.3 8.1 0.1 2.4 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Fer4_12 PF13353.6 gi|344210324|ref|YP_004794644.1| - 0.17 12.1 0.0 0.41 10.9 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain MFS_1 PF07690.16 gi|344210325|ref|YP_004794645.1| - 2.3e-43 148.5 81.3 6.6e-43 147.0 59.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344210325|ref|YP_004794645.1| - 7.3e-06 25.1 6.7 7.3e-06 25.1 6.7 2.8 3 0 0 3 3 3 1 MFS_1 like family PsiE PF06146.12 gi|344210326|ref|YP_004794646.1| - 1.5e-14 54.1 7.2 1.5e-14 54.1 7.2 2.2 2 1 0 2 2 2 1 Phosphate-starvation-inducible E DUF2177 PF09945.9 gi|344210326|ref|YP_004794646.1| - 0.14 12.3 6.0 0.69 10.0 3.2 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2177) Rnf-Nqr PF02508.14 gi|344210326|ref|YP_004794646.1| - 0.46 10.4 7.1 0.6 10.1 7.1 1.1 1 0 0 1 1 1 0 Rnf-Nqr subunit, membrane protein DUF202 PF02656.15 gi|344210326|ref|YP_004794646.1| - 7.1 7.2 10.2 1e+02 3.4 9.6 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF373 PF04123.13 gi|344210327|ref|YP_004794647.1| - 4.6e-117 391.2 8.9 5.3e-117 391.0 8.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP-synt_I PF03899.15 gi|344210327|ref|YP_004794647.1| - 0.094 13.1 6.5 4.1 7.8 0.1 2.5 2 0 0 2 2 2 0 ATP synthase I chain DUF2721 PF11026.8 gi|344210327|ref|YP_004794647.1| - 0.28 11.1 3.1 0.45 10.4 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) Myco_arth_vir_N PF09610.10 gi|344210327|ref|YP_004794647.1| - 8.2 6.6 10.7 0.32 11.1 4.1 2.2 2 0 0 2 2 2 0 Mycoplasma virulence signal region (Myco_arth_vir_N) MctB PF11382.8 gi|344210328|ref|YP_004794648.1| - 0.0014 18.4 1.0 0.0018 18.1 1.0 1.2 1 0 0 1 1 1 1 Copper transport outer membrane protein, MctB HEAT_2 PF13646.6 gi|344210328|ref|YP_004794648.1| - 0.023 15.1 0.7 0.033 14.6 0.7 1.3 1 0 0 1 1 1 0 HEAT repeats Bac_globin PF01152.21 gi|344210329|ref|YP_004794649.1| - 4.1e-23 81.8 0.0 4.5e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|344210329|ref|YP_004794649.1| - 9.6e-05 22.3 0.0 0.00035 20.5 0.0 1.7 1 1 1 2 2 2 1 Protoglobin CMD PF02627.20 gi|344210329|ref|YP_004794649.1| - 0.016 15.2 0.3 0.027 14.5 0.3 1.4 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family TRAM PF01938.20 gi|344210331|ref|YP_004794651.1| - 4.2e-07 29.9 0.2 5.9e-07 29.4 0.2 1.2 1 0 0 1 1 1 1 TRAM domain DUF1318 PF07027.12 gi|344210331|ref|YP_004794651.1| - 0.11 13.0 0.0 0.16 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1318) DNA_pol_phi PF04931.13 gi|344210331|ref|YP_004794651.1| - 1.9 6.5 5.7 2 6.4 5.7 1.0 1 0 0 1 1 1 0 DNA polymerase phi adh_short_C2 PF13561.6 gi|344210332|ref|YP_004794652.1| - 3.3e-50 170.8 0.0 4.5e-50 170.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344210332|ref|YP_004794652.1| - 1.7e-38 132.0 0.0 2.2e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344210332|ref|YP_004794652.1| - 1.7e-10 41.1 0.0 2.9e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|344210332|ref|YP_004794652.1| - 0.0013 18.6 0.3 0.0025 17.7 0.2 1.4 1 1 0 1 1 1 1 NAD(P)H-binding NTP_transferase PF00483.23 gi|344210333|ref|YP_004794653.1| - 7.9e-38 130.4 0.0 1.3e-37 129.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344210333|ref|YP_004794653.1| - 3e-06 27.7 0.2 6.3e-06 26.6 0.2 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|344210333|ref|YP_004794653.1| - 0.0085 16.0 0.2 0.013 15.4 0.2 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase OEP PF02321.18 gi|344210334|ref|YP_004794654.1| - 0.075 12.8 0.3 0.098 12.5 0.3 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein tRNA_anti-codon PF01336.25 gi|344210335|ref|YP_004794655.1| - 0.01 15.8 0.2 0.12 12.4 0.0 2.5 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Glyoxalase PF00903.25 gi|344210337|ref|YP_004794657.1| - 4.3e-16 59.3 0.0 5e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|344210337|ref|YP_004794657.1| - 3.6e-11 43.3 0.0 5.3e-11 42.8 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|344210337|ref|YP_004794657.1| - 2.5e-06 27.4 0.0 0.032 14.2 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|344210337|ref|YP_004794657.1| - 4.6e-05 24.2 0.8 0.0001 23.1 0.8 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|344210337|ref|YP_004794657.1| - 8.8e-05 22.7 0.1 0.00011 22.4 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain RHH_1 PF01402.21 gi|344210338|ref|YP_004794658.1| - 0.00067 19.5 0.2 0.00067 19.5 0.2 2.0 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|344210338|ref|YP_004794658.1| - 0.0031 17.1 0.0 0.0078 15.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|344210338|ref|YP_004794658.1| - 0.0079 16.7 0.0 0.021 15.4 0.0 1.7 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system GAS PF13851.6 gi|344210338|ref|YP_004794658.1| - 0.019 14.3 3.0 0.12 11.7 2.5 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding TetR_C_24 PF17932.1 gi|344210338|ref|YP_004794658.1| - 0.07 13.4 2.8 0.17 12.2 1.5 1.9 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain UPF0449 PF15136.6 gi|344210338|ref|YP_004794658.1| - 0.1 13.1 3.4 0.074 13.5 1.3 1.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0449 Histone_HNS PF00816.21 gi|344210338|ref|YP_004794658.1| - 0.13 13.1 2.5 17 6.3 1.4 2.1 2 0 0 2 2 2 0 H-NS histone family YabA PF06156.13 gi|344210338|ref|YP_004794658.1| - 0.15 12.7 2.5 0.29 11.8 2.4 1.6 1 1 0 1 1 1 0 Initiation control protein YabA HNH PF01844.23 gi|344210340|ref|YP_004794660.1| - 2.4e-06 27.6 0.0 3.7e-06 27.0 0.0 1.4 1 1 0 1 1 1 1 HNH endonuclease DUF5403 PF17395.2 gi|344210340|ref|YP_004794660.1| - 0.06 13.6 0.0 0.076 13.3 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5403) Pribosyltran PF00156.27 gi|344210342|ref|YP_004794662.1| - 7.1e-26 90.6 0.3 1.1e-24 86.7 0.3 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|344210342|ref|YP_004794662.1| - 7e-05 22.4 0.0 0.0006 19.4 0.0 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|344210342|ref|YP_004794662.1| - 0.00012 21.6 0.0 0.00023 20.7 0.0 1.4 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase CBS PF00571.28 gi|344210343|ref|YP_004794663.1| - 1.2e-22 80.1 4.1 1.3e-12 47.9 0.5 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|344210343|ref|YP_004794663.1| - 2.5e-14 53.2 9.1 8.1e-09 35.1 0.1 3.1 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|344210343|ref|YP_004794663.1| - 0.0016 18.1 7.0 0.0016 18.1 7.0 1.9 1 1 0 1 1 1 1 Peptidase M50B-like DUF3267 PF11667.8 gi|344210343|ref|YP_004794663.1| - 0.0051 17.1 1.6 0.0051 17.1 1.6 2.3 3 0 0 3 3 3 1 Putative zincin peptidase Cupin_2 PF07883.11 gi|344210344|ref|YP_004794664.1| - 2.5e-19 68.7 0.3 3.3e-19 68.4 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|344210344|ref|YP_004794664.1| - 1.6e-08 34.3 0.0 2.5e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|344210344|ref|YP_004794664.1| - 6.8e-05 22.8 0.2 8.9e-05 22.4 0.2 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|344210344|ref|YP_004794664.1| - 0.00021 21.2 0.0 0.00027 20.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|344210344|ref|YP_004794664.1| - 0.00023 20.8 0.1 0.00032 20.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.8 gi|344210344|ref|YP_004794664.1| - 0.0026 17.9 0.0 0.0036 17.5 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like DEAD PF00270.29 gi|344210345|ref|YP_004794665.1| - 1.9e-21 76.6 0.0 6.7e-21 74.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|344210345|ref|YP_004794665.1| - 3.5e-14 53.1 0.0 8e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|344210345|ref|YP_004794665.1| - 1.3e-09 38.3 0.0 2.4e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PhnA_Zn_Ribbon PF08274.12 gi|344210345|ref|YP_004794665.1| - 0.013 15.5 0.8 0.026 14.5 0.8 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon TackOD1 PF18551.1 gi|344210347|ref|YP_004794667.1| - 0.002 17.8 0.3 0.002 17.8 0.3 1.0 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DZR PF12773.7 gi|344210347|ref|YP_004794667.1| - 0.0024 17.8 0.6 0.0028 17.6 0.6 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|344210347|ref|YP_004794667.1| - 0.0059 17.3 0.4 0.0063 17.2 0.4 1.1 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|344210347|ref|YP_004794667.1| - 0.012 15.7 1.8 0.019 15.0 1.8 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|344210347|ref|YP_004794667.1| - 0.015 14.8 1.9 0.21 11.1 0.3 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|344210347|ref|YP_004794667.1| - 0.017 15.0 1.0 0.024 14.5 1.0 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.16 gi|344210347|ref|YP_004794667.1| - 0.025 14.6 4.2 0.86 9.7 1.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|344210347|ref|YP_004794667.1| - 0.043 13.9 0.6 0.072 13.2 0.6 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 ProRS-C_1 PF09180.11 gi|344210347|ref|YP_004794667.1| - 0.048 13.9 0.2 0.058 13.6 0.2 1.1 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal RecR PF02132.15 gi|344210347|ref|YP_004794667.1| - 0.051 13.1 4.5 0.17 11.5 4.5 1.8 1 1 0 1 1 1 0 RecR protein Nop10p PF04135.12 gi|344210347|ref|YP_004794667.1| - 0.078 13.0 0.3 0.1 12.7 0.3 1.2 1 0 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-C2H2_11 PF16622.5 gi|344210347|ref|YP_004794667.1| - 0.1 12.4 0.9 0.49 10.2 0.1 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-ACC PF17848.1 gi|344210347|ref|YP_004794667.1| - 0.17 12.0 3.5 4.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|344210347|ref|YP_004794667.1| - 0.18 12.5 2.0 3.3 8.4 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRDD PF13597.6 gi|344210347|ref|YP_004794667.1| - 0.2 10.4 0.6 0.2 10.4 0.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|344210347|ref|YP_004794667.1| - 0.49 10.6 6.3 15 5.8 6.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain CitMHS PF03600.16 gi|344210348|ref|YP_004794668.1| - 1.4e-61 208.3 3.0 1.4e-61 208.3 3.0 1.8 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|344210348|ref|YP_004794668.1| - 8.8e-23 81.1 37.2 2.2e-13 50.1 14.4 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|344210348|ref|YP_004794668.1| - 1.9e-21 75.6 3.1 4.4e-12 45.7 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain MCPsignal PF00015.21 gi|344210349|ref|YP_004794669.1| - 2.9e-38 131.4 26.4 2.9e-38 131.4 26.4 4.7 1 1 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344210349|ref|YP_004794669.1| - 3.6e-17 62.5 18.1 1.4e-12 47.7 0.2 5.8 5 0 0 5 5 5 2 HAMP domain PSDC PF12588.8 gi|344210349|ref|YP_004794669.1| - 0.008 16.2 0.8 0.066 13.2 0.1 2.4 2 0 0 2 2 2 1 Phophatidylserine decarboxylase DUF1664 PF07889.12 gi|344210349|ref|YP_004794669.1| - 0.026 14.6 33.8 0.071 13.1 2.8 5.7 1 1 3 5 5 5 0 Protein of unknown function (DUF1664) Mod_r PF07200.13 gi|344210349|ref|YP_004794669.1| - 0.05 13.7 28.1 0.16 12.1 6.6 4.5 2 1 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Mce4_CUP1 PF11887.8 gi|344210349|ref|YP_004794669.1| - 0.33 10.4 17.1 0.083 12.3 0.3 3.5 1 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative AIP3 PF03915.13 gi|344210349|ref|YP_004794669.1| - 0.71 8.9 33.2 0.082 12.0 10.9 3.0 2 1 2 4 4 4 0 Actin interacting protein 3 Fib_alpha PF08702.10 gi|344210349|ref|YP_004794669.1| - 0.75 10.0 24.9 1 9.6 1.5 4.8 2 1 4 6 6 6 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|344210349|ref|YP_004794669.1| - 0.85 10.0 29.5 0.97 9.8 1.0 6.0 3 2 0 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|344210349|ref|YP_004794669.1| - 0.92 8.1 40.9 0.59 8.7 16.6 2.5 1 1 1 2 2 2 0 AAA domain DUF489 PF04356.12 gi|344210349|ref|YP_004794669.1| - 0.96 9.4 4.9 1.4 8.9 1.7 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF489) DUF948 PF06103.11 gi|344210349|ref|YP_004794669.1| - 2.7 8.3 47.7 0.041 14.1 5.9 7.3 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF2203 PF09969.9 gi|344210349|ref|YP_004794669.1| - 3 8.6 39.0 0.11 13.2 1.7 5.5 1 1 4 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fzo_mitofusin PF04799.13 gi|344210349|ref|YP_004794669.1| - 4.6 6.8 16.4 1 8.9 0.6 4.5 3 1 1 4 4 4 0 fzo-like conserved region YabA PF06156.13 gi|344210349|ref|YP_004794669.1| - 7.4 7.3 13.5 3.4 8.4 1.2 4.7 3 1 1 4 4 4 0 Initiation control protein YabA Spc7 PF08317.11 gi|344210349|ref|YP_004794669.1| - 7.9 5.3 44.4 2.4 6.9 7.6 4.2 1 1 3 4 4 4 0 Spc7 kinetochore protein Bmp PF02608.14 gi|344210350|ref|YP_004794670.1| - 2.2e-59 200.9 0.1 2.9e-59 200.5 0.1 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|344210350|ref|YP_004794670.1| - 6.6e-05 22.6 1.9 9.4e-05 22.1 1.9 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain MCM PF00493.23 gi|344210351|ref|YP_004794671.1| - 2.5e-86 288.4 0.0 1.1e-65 220.8 0.0 2.2 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|344210351|ref|YP_004794671.1| - 9e-37 125.7 0.1 1.9e-36 124.7 0.1 1.5 1 0 0 1 1 1 1 MCM OB domain LAGLIDADG_3 PF14528.6 gi|344210351|ref|YP_004794671.1| - 1.6e-28 98.8 0.0 3.7e-15 56.0 0.0 2.8 2 0 0 2 2 2 2 LAGLIDADG-like domain MCM_lid PF17855.1 gi|344210351|ref|YP_004794671.1| - 7.7e-28 96.8 1.0 2.8e-27 95.0 0.2 2.4 2 0 0 2 2 2 1 MCM AAA-lid domain Intein_splicing PF14890.6 gi|344210351|ref|YP_004794671.1| - 3.7e-25 88.4 0.0 1.7e-24 86.3 0.0 2.2 2 0 0 2 2 2 1 Intein splicing domain HTH_31 PF13560.6 gi|344210351|ref|YP_004794671.1| - 4.4e-10 39.7 0.4 4.4e-10 39.7 0.4 2.4 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|344210351|ref|YP_004794671.1| - 5.1e-09 36.0 0.0 1.3e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix MCM_N PF14551.6 gi|344210351|ref|YP_004794671.1| - 3.2e-08 34.1 0.6 1.7e-07 31.7 0.8 2.1 2 0 0 2 2 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|344210351|ref|YP_004794671.1| - 7.4e-08 32.0 0.0 1.5e-05 24.4 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_19 PF12844.7 gi|344210351|ref|YP_004794671.1| - 0.00035 20.5 0.6 0.1 12.7 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain AAA_5 PF07728.14 gi|344210351|ref|YP_004794671.1| - 0.0027 17.7 0.0 0.38 10.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|344210351|ref|YP_004794671.1| - 0.0066 16.2 0.0 0.2 11.4 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Hint PF01079.20 gi|344210351|ref|YP_004794671.1| - 0.013 15.0 0.1 0.2 11.1 0.0 2.1 2 0 0 2 2 2 0 Hint module RQC PF09382.10 gi|344210351|ref|YP_004794671.1| - 0.026 14.3 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 RQC domain RcpC PF16976.5 gi|344210351|ref|YP_004794671.1| - 0.15 12.1 0.3 1.8 8.7 0.1 2.5 2 0 0 2 2 2 0 Flp pilus assembly protein RcpC/CpaB FUSC PF04632.12 gi|344210354|ref|YP_004794674.1| - 2.9 6.3 15.5 1.2 7.6 7.2 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family BON PF04972.17 gi|344210355|ref|YP_004794675.1| - 0.4 11.0 0.1 0.4 11.0 0.1 2.3 3 0 0 3 3 3 0 BON domain ParA PF10609.9 gi|344210356|ref|YP_004794676.1| - 2.2e-13 50.3 0.1 2.4e-06 27.2 0.0 2.6 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|344210356|ref|YP_004794676.1| - 7.6e-12 45.2 0.6 1.1e-05 25.0 0.0 3.0 3 0 0 3 3 3 3 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|344210356|ref|YP_004794676.1| - 5.4e-08 33.0 0.0 2.5e-07 30.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344210356|ref|YP_004794676.1| - 1.5e-07 31.6 0.0 2.2e-06 27.7 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|344210356|ref|YP_004794676.1| - 0.00018 20.9 0.2 0.16 11.3 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ AAA_25 PF13481.6 gi|344210356|ref|YP_004794676.1| - 0.00045 19.8 1.0 0.001 18.6 0.4 1.8 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|344210356|ref|YP_004794676.1| - 0.00074 18.8 0.0 0.0024 17.1 0.1 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|344210356|ref|YP_004794676.1| - 0.0025 17.3 0.0 0.35 10.3 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RNA_helicase PF00910.22 gi|344210356|ref|YP_004794676.1| - 0.13 12.7 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|344210356|ref|YP_004794676.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|344210356|ref|YP_004794676.1| - 0.26 11.0 0.0 0.47 10.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain TFIIB PF00382.19 gi|344210357|ref|YP_004794677.1| - 2.8e-33 113.8 1.3 3e-17 62.4 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344210357|ref|YP_004794677.1| - 4.7e-10 38.8 2.9 1e-09 37.8 2.9 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding RB_B PF01857.20 gi|344210357|ref|YP_004794677.1| - 0.012 15.6 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain FMN_red PF03358.15 gi|344210360|ref|YP_004794680.1| - 8.9e-27 93.7 0.0 1.1e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|344210360|ref|YP_004794680.1| - 2.1e-06 27.6 0.0 3.4e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold DUF1947 PF09183.10 gi|344210361|ref|YP_004794681.1| - 1.5 9.2 3.7 1.2 9.5 1.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) OsmC PF02566.19 gi|344210361|ref|YP_004794681.1| - 2.4 8.7 5.2 7.3 7.1 5.2 1.7 1 1 0 1 1 1 0 OsmC-like protein Rieske PF00355.26 gi|344210362|ref|YP_004794682.1| - 2.6e-07 30.5 0.1 4.2e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain MatE PF01554.18 gi|344210363|ref|YP_004794683.1| - 4.3e-57 192.3 31.8 8.4e-35 119.8 14.9 2.8 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|344210363|ref|YP_004794683.1| - 5.7e-06 26.5 15.8 5.7e-06 26.5 15.8 4.0 3 2 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain YniB PF14002.6 gi|344210363|ref|YP_004794683.1| - 0.11 12.2 0.1 0.11 12.2 0.1 1.8 2 0 0 2 2 2 0 YniB-like protein Tom5 PF10642.9 gi|344210363|ref|YP_004794683.1| - 1.5 8.9 4.3 0.59 10.2 0.3 2.4 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase TetR_C_6 PF13977.6 gi|344210364|ref|YP_004794684.1| - 2.1e-15 56.9 0.1 5e-15 55.7 0.0 1.6 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344210364|ref|YP_004794684.1| - 1.8e-10 40.4 0.0 3e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_25 PF17933.1 gi|344210364|ref|YP_004794684.1| - 0.0002 21.7 0.1 0.0009 19.5 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|344210364|ref|YP_004794684.1| - 0.00059 20.1 0.0 0.0018 18.5 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|344210364|ref|YP_004794684.1| - 0.00084 19.4 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|344210364|ref|YP_004794684.1| - 0.0027 18.0 0.3 0.0052 17.1 0.3 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|344210364|ref|YP_004794684.1| - 0.0044 17.1 0.0 0.013 15.6 0.0 1.7 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|344210364|ref|YP_004794684.1| - 0.0066 16.6 0.4 0.015 15.5 0.3 1.6 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_4 PF08359.11 gi|344210364|ref|YP_004794684.1| - 0.017 15.3 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region TetR_C_27 PF17935.1 gi|344210364|ref|YP_004794684.1| - 0.062 13.4 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain UPF0122 PF04297.14 gi|344210364|ref|YP_004794684.1| - 0.11 12.7 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like AsnC_trans_reg PF01037.21 gi|344210365|ref|YP_004794685.1| - 8.5e-13 48.1 0.1 1.3e-12 47.4 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|344210365|ref|YP_004794685.1| - 1.5e-09 37.3 0.1 2.9e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344210365|ref|YP_004794685.1| - 9.1e-07 28.6 0.0 1.5e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|344210365|ref|YP_004794685.1| - 9.7e-07 28.5 0.2 1.5e-06 27.9 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344210365|ref|YP_004794685.1| - 9.8e-05 22.2 0.0 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344210365|ref|YP_004794685.1| - 0.00047 20.2 0.0 0.0012 18.9 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344210365|ref|YP_004794685.1| - 0.0076 16.2 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210365|ref|YP_004794685.1| - 0.0087 15.8 0.1 0.019 14.7 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|344210365|ref|YP_004794685.1| - 0.013 15.4 0.0 0.04 13.9 0.0 1.7 2 0 0 2 2 2 0 MarR family GntR PF00392.21 gi|344210365|ref|YP_004794685.1| - 0.015 15.0 0.0 0.033 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|344210365|ref|YP_004794685.1| - 0.017 14.9 0.1 0.055 13.3 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain TrmB PF01978.19 gi|344210365|ref|YP_004794685.1| - 0.022 14.6 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|344210365|ref|YP_004794685.1| - 0.047 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Pneumo_matrix PF03393.16 gi|344210365|ref|YP_004794685.1| - 0.06 12.6 0.0 0.077 12.2 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus matrix protein HTH_50 PF18024.1 gi|344210365|ref|YP_004794685.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Cdc6_C PF09079.11 gi|344210365|ref|YP_004794685.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain Gln-synt_C PF00120.24 gi|344210366|ref|YP_004794686.1| - 6.4e-141 469.3 0.0 7.8e-141 469.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|344210366|ref|YP_004794686.1| - 7.5e-30 102.5 0.1 1.7e-29 101.3 0.1 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|344210366|ref|YP_004794686.1| - 0.068 13.0 0.0 0.3 10.9 0.0 2.0 1 1 0 1 1 1 0 Glutamine synthetase N-terminal domain PAP2 PF01569.21 gi|344210367|ref|YP_004794687.1| - 6.3e-16 58.4 5.2 6.3e-16 58.4 5.2 2.5 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|344210367|ref|YP_004794687.1| - 5.5e-12 45.8 11.1 1.4e-11 44.4 11.1 1.7 1 0 0 1 1 1 1 PAP2 superfamily Virul_fac_BrkB PF03631.15 gi|344210368|ref|YP_004794688.1| - 1.5e-42 146.0 21.5 1.5e-42 146.0 21.5 2.1 2 0 0 2 2 2 1 Virulence factor BrkB HNF-1_N PF04814.13 gi|344210368|ref|YP_004794688.1| - 0.27 11.8 0.1 0.41 11.2 0.1 1.1 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus DUF2207 PF09972.9 gi|344210368|ref|YP_004794688.1| - 5.1 5.7 12.5 3.2e+02 -0.2 12.7 2.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) MatE PF01554.18 gi|344210369|ref|YP_004794689.1| - 3.1e-50 170.0 21.7 6.1e-26 91.0 7.8 2.7 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|344210369|ref|YP_004794689.1| - 9.4e-11 42.0 8.4 9.4e-11 42.0 8.4 4.8 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|344210369|ref|YP_004794689.1| - 1.2e-06 27.5 7.9 2.6e-06 26.3 5.4 2.4 2 1 0 2 2 2 1 Lipid II flippase MurJ TRM PF02005.16 gi|344210371|ref|YP_004794691.1| - 1.8e-92 310.4 0.0 2.1e-92 310.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|344210371|ref|YP_004794691.1| - 0.00037 20.1 0.0 0.00075 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain UvrB_inter PF17757.1 gi|344210371|ref|YP_004794691.1| - 0.064 13.4 0.1 0.17 12.1 0.0 1.7 2 0 0 2 2 2 0 UvrB interaction domain Methyltransf_25 PF13649.6 gi|344210371|ref|YP_004794691.1| - 0.068 13.9 0.1 0.16 12.7 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|344210371|ref|YP_004794691.1| - 0.13 11.6 0.2 0.2 11.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HisKA_7TM PF16927.5 gi|344210372|ref|YP_004794692.1| - 1.9e-28 100.0 17.1 2.6e-28 99.6 17.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|344210372|ref|YP_004794692.1| - 4.2e-14 53.0 0.1 2e-13 50.8 0.0 2.1 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|344210372|ref|YP_004794692.1| - 3.3e-11 43.2 0.1 8.8e-10 38.6 0.1 2.4 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|344210372|ref|YP_004794692.1| - 4.2e-09 36.6 1.3 1.3e-07 31.8 0.2 2.9 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|344210372|ref|YP_004794692.1| - 1.3e-07 31.5 0.5 2.3e-06 27.5 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|344210372|ref|YP_004794692.1| - 1.6e-06 28.1 0.4 3.5e-06 27.0 0.2 1.8 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|344210372|ref|YP_004794692.1| - 9.1e-05 22.7 0.0 0.0021 18.3 0.0 2.6 2 1 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|344210372|ref|YP_004794692.1| - 0.0055 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|344210372|ref|YP_004794692.1| - 0.083 12.5 0.1 0.083 12.5 0.1 3.0 3 1 1 4 4 4 0 Archaeal 4TM region of histidine kinase SWIM PF04434.17 gi|344210373|ref|YP_004794693.1| - 0.038 13.7 2.2 0.17 11.6 2.2 1.9 1 1 0 1 1 1 0 SWIM zinc finger ADC PF06314.11 gi|344210374|ref|YP_004794694.1| - 4.3e-19 69.0 0.1 6.5e-19 68.4 0.1 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.25 gi|344210375|ref|YP_004794695.1| - 7e-47 159.4 0.0 9e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344210375|ref|YP_004794695.1| - 8e-41 140.1 0.2 1.1e-40 139.7 0.2 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344210375|ref|YP_004794695.1| - 1.8e-12 47.5 0.1 1.1e-11 45.0 0.1 1.9 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344210375|ref|YP_004794695.1| - 2.4e-05 23.9 0.1 4.6e-05 23.0 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|344210375|ref|YP_004794695.1| - 0.00029 20.0 0.1 0.0004 19.6 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1737 PF08410.10 gi|344210375|ref|YP_004794695.1| - 0.0042 16.9 0.0 0.014 15.2 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1737) DUF2827 PF10933.8 gi|344210375|ref|YP_004794695.1| - 0.089 11.5 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2827) DNA_pol_lambd_f PF10391.9 gi|344210375|ref|YP_004794695.1| - 0.17 11.7 0.1 0.42 10.5 0.1 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda GATase PF00117.28 gi|344210376|ref|YP_004794696.1| - 2.5e-22 79.6 0.0 3.1e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|344210376|ref|YP_004794696.1| - 9e-09 35.2 0.0 1.7e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|344210376|ref|YP_004794696.1| - 6.9e-08 32.6 0.0 7.4e-07 29.2 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family DJ-1_PfpI PF01965.24 gi|344210376|ref|YP_004794696.1| - 8.8e-05 22.4 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|344210376|ref|YP_004794696.1| - 0.00013 21.8 0.6 0.0018 18.1 0.6 2.3 1 1 0 1 1 1 1 Peptidase C26 CLP_protease PF00574.23 gi|344210377|ref|YP_004794697.1| - 0.061 13.2 0.1 0.077 12.9 0.1 1.1 1 0 0 1 1 1 0 Clp protease UDG PF03167.19 gi|344210378|ref|YP_004794698.1| - 6.1e-39 133.5 0.0 7.5e-39 133.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribonuc_L-PSP PF01042.21 gi|344210379|ref|YP_004794699.1| - 1.6e-19 70.1 0.1 1.8e-19 69.9 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Histone_HNS PF00816.21 gi|344210379|ref|YP_004794699.1| - 0.027 15.3 0.0 0.032 15.1 0.0 1.2 1 0 0 1 1 1 0 H-NS histone family DUF99 PF01949.16 gi|344210380|ref|YP_004794700.1| - 4.1e-50 169.7 0.0 4.5e-50 169.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 GvpG PF05120.12 gi|344210381|ref|YP_004794701.1| - 0.27 11.3 4.9 0.56 10.3 4.8 1.7 1 1 0 1 1 1 0 Gas vesicle protein G Lactamase_B PF00753.27 gi|344210382|ref|YP_004794702.1| - 1.3e-10 41.7 9.1 1.4e-08 35.0 9.1 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|344210382|ref|YP_004794702.1| - 6.4e-06 25.8 4.2 3.6e-05 23.4 4.2 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF687 PF05095.12 gi|344210382|ref|YP_004794702.1| - 0.12 10.9 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF687) Lactamase_B_3 PF13483.6 gi|344210382|ref|YP_004794702.1| - 0.18 11.7 1.5 0.35 10.7 1.5 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain HisKA_4TM PF16926.5 gi|344210383|ref|YP_004794703.1| - 1.4e-08 34.5 8.8 3.2e-08 33.3 8.8 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase IclR PF01614.18 gi|344210383|ref|YP_004794703.1| - 0.04 13.8 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial transcriptional regulator Ribosomal_L40e PF01020.17 gi|344210384|ref|YP_004794704.1| - 5.6e-08 32.5 4.2 6.5e-08 32.3 4.2 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|344210384|ref|YP_004794704.1| - 0.00017 21.2 3.0 0.00023 20.8 3.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|344210384|ref|YP_004794704.1| - 0.0005 20.0 1.5 0.0005 20.0 1.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon DHHC PF01529.20 gi|344210384|ref|YP_004794704.1| - 0.046 13.8 1.3 0.055 13.6 1.3 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DNA_RNApol_7kD PF03604.13 gi|344210384|ref|YP_004794704.1| - 0.17 11.6 6.1 0.32 10.7 6.1 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|344210384|ref|YP_004794704.1| - 0.26 10.7 3.6 0.33 10.4 3.6 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Ribo_biogen_C PF04034.13 gi|344210386|ref|YP_004794706.1| - 5.8e-45 152.1 0.0 7.2e-45 151.8 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|344210386|ref|YP_004794706.1| - 3.9e-07 29.8 0.0 5.4e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.15 gi|344210386|ref|YP_004794706.1| - 0.16 11.7 0.0 1 9.0 0.0 1.9 1 1 0 1 1 1 0 DTW domain AhpC-TSA PF00578.21 gi|344210387|ref|YP_004794707.1| - 3.8e-27 94.7 0.0 7.5e-27 93.7 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344210387|ref|YP_004794707.1| - 3.1e-18 65.9 0.0 5.1e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Redoxin DUF1771 PF08590.10 gi|344210387|ref|YP_004794707.1| - 0.035 14.5 1.5 0.035 14.5 1.5 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1771) HemY_N PF07219.13 gi|344210387|ref|YP_004794707.1| - 2.5 8.3 4.1 1.1 9.5 0.3 2.1 2 0 0 2 2 2 0 HemY protein N-terminus SnoaL_2 PF12680.7 gi|344210388|ref|YP_004794708.1| - 1.8e-11 44.6 1.0 2.6e-11 44.1 1.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|344210388|ref|YP_004794708.1| - 3.3e-08 33.7 0.1 3.8e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|344210388|ref|YP_004794708.1| - 4.3e-05 23.9 0.2 5.1e-05 23.6 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL PF07366.12 gi|344210388|ref|YP_004794708.1| - 0.0011 18.8 0.1 0.0012 18.6 0.1 1.2 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase NTF2 PF02136.20 gi|344210388|ref|YP_004794708.1| - 0.0062 17.1 0.0 0.0069 16.9 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.6 gi|344210388|ref|YP_004794708.1| - 0.0076 16.5 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain Methyltransf_25 PF13649.6 gi|344210389|ref|YP_004794709.1| - 2.6e-12 47.3 0.1 4.4e-12 46.5 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210389|ref|YP_004794709.1| - 4e-12 46.6 0.1 6.2e-12 46.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210389|ref|YP_004794709.1| - 6.7e-10 39.0 0.0 8.7e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210389|ref|YP_004794709.1| - 2.2e-06 27.5 0.0 6e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210389|ref|YP_004794709.1| - 3.6e-05 24.4 0.0 0.0001 23.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|344210389|ref|YP_004794709.1| - 0.00052 19.7 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) TehB PF03848.14 gi|344210389|ref|YP_004794709.1| - 0.0012 18.2 0.0 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|344210389|ref|YP_004794709.1| - 0.0038 16.8 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|344210389|ref|YP_004794709.1| - 0.053 12.9 0.2 0.071 12.5 0.2 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) SAM_MT PF04445.13 gi|344210389|ref|YP_004794709.1| - 0.083 12.3 0.3 0.13 11.7 0.3 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase TrkA_N PF02254.18 gi|344210389|ref|YP_004794709.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain DUF3606 PF12244.8 gi|344210389|ref|YP_004794709.1| - 0.13 12.2 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) Seryl_tRNA_N PF02403.22 gi|344210390|ref|YP_004794710.1| - 1.2e-29 102.7 5.9 1.8e-29 102.1 5.9 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|344210390|ref|YP_004794710.1| - 2.3e-26 92.8 0.0 1.7e-25 90.0 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) FapA PF03961.13 gi|344210390|ref|YP_004794710.1| - 0.069 11.7 3.9 0.1 11.2 3.9 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Endotoxin_C2 PF18449.1 gi|344210390|ref|YP_004794710.1| - 0.086 13.2 0.8 3 8.2 0.7 2.2 2 0 0 2 2 2 0 Delta endotoxin Golgin_A5 PF09787.9 gi|344210390|ref|YP_004794710.1| - 0.21 11.1 5.4 0.3 10.5 5.4 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 ZapB PF06005.12 gi|344210390|ref|YP_004794710.1| - 0.22 12.0 15.7 0.29 11.6 0.7 2.9 2 2 2 4 4 4 0 Cell division protein ZapB GreA_GreB_N PF03449.15 gi|344210390|ref|YP_004794710.1| - 0.24 11.6 11.3 0.71 10.1 11.3 1.8 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal APG6_N PF17675.1 gi|344210390|ref|YP_004794710.1| - 0.29 11.7 11.0 0.67 10.5 11.0 1.6 1 0 0 1 1 1 0 Apg6 coiled-coil region KELK PF15796.5 gi|344210390|ref|YP_004794710.1| - 0.34 11.4 10.3 0.83 10.1 10.2 1.7 1 1 0 1 1 1 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase HlyD_2 PF12700.7 gi|344210390|ref|YP_004794710.1| - 0.51 9.0 3.4 0.71 8.5 3.4 1.1 1 0 0 1 1 1 0 HlyD family secretion protein UPF0184 PF03670.13 gi|344210390|ref|YP_004794710.1| - 2.5 8.5 8.4 3.6 8.0 4.5 2.7 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) V-SNARE PF05008.15 gi|344210390|ref|YP_004794710.1| - 3.8 8.0 9.3 1.3e+02 3.1 0.0 3.1 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Usp PF00582.26 gi|344210391|ref|YP_004794711.1| - 6e-33 114.3 4.6 6.9e-33 114.1 4.6 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|344210391|ref|YP_004794711.1| - 0.044 13.4 0.2 0.085 12.5 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DXP_reductoisom PF02670.16 gi|344210391|ref|YP_004794711.1| - 0.046 14.4 0.3 0.063 14.0 0.3 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase PheRS_DBD1 PF18552.1 gi|344210391|ref|YP_004794711.1| - 0.073 12.8 0.7 2.1 8.2 0.1 2.4 2 0 0 2 2 2 0 PheRS DNA binding domain 1 Lactamase_B PF00753.27 gi|344210392|ref|YP_004794712.1| - 5.8e-25 88.4 11.1 9.4e-25 87.8 11.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|344210392|ref|YP_004794712.1| - 2.3e-06 27.3 1.6 8.8e-06 25.4 1.5 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Na_H_Exchanger PF00999.21 gi|344210393|ref|YP_004794713.1| - 3.8e-34 118.1 41.9 5e-34 117.7 41.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|344210393|ref|YP_004794713.1| - 3.7e-31 107.8 1.9 3.7e-31 107.8 1.9 2.1 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|344210393|ref|YP_004794713.1| - 1e-08 34.9 0.3 2.5e-08 33.6 0.1 1.8 2 0 0 2 2 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|344210393|ref|YP_004794713.1| - 1.4e-06 28.6 0.3 4.4e-06 27.1 0.3 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Epimerase PF01370.21 gi|344210393|ref|YP_004794713.1| - 0.00011 21.8 0.2 0.00018 21.1 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|344210393|ref|YP_004794713.1| - 0.0002 21.9 1.4 0.0002 21.9 1.4 4.3 3 1 1 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|344210393|ref|YP_004794713.1| - 0.00026 20.6 0.1 0.00063 19.4 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|344210393|ref|YP_004794713.1| - 0.00049 19.8 0.1 0.00049 19.8 0.1 2.9 4 0 0 4 4 4 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|344210393|ref|YP_004794713.1| - 0.00057 19.2 0.1 0.00079 18.8 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|344210393|ref|YP_004794713.1| - 0.00083 19.4 2.9 0.0094 15.9 0.1 2.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.14 gi|344210393|ref|YP_004794713.1| - 0.0039 16.5 0.2 0.0078 15.5 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|344210393|ref|YP_004794713.1| - 0.0039 17.4 0.5 0.013 15.7 0.4 1.9 1 1 1 2 2 2 1 Saccharopine dehydrogenase NADP binding domain FAD_binding_2 PF00890.24 gi|344210393|ref|YP_004794713.1| - 0.004 16.3 0.6 0.0097 15.0 0.6 1.7 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.15 gi|344210393|ref|YP_004794713.1| - 0.0092 16.2 0.4 0.053 13.7 0.1 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.24 gi|344210393|ref|YP_004794713.1| - 0.0098 15.5 0.2 0.019 14.5 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|344210393|ref|YP_004794713.1| - 0.01 16.4 1.0 0.036 14.6 0.6 2.2 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|344210393|ref|YP_004794713.1| - 0.011 15.4 0.1 0.018 14.6 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.6 gi|344210393|ref|YP_004794713.1| - 0.018 15.2 0.1 0.069 13.4 0.1 2.1 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|344210393|ref|YP_004794713.1| - 0.022 14.6 0.5 0.022 14.6 0.5 2.1 2 0 0 2 2 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|344210393|ref|YP_004794713.1| - 0.026 15.1 0.0 0.058 13.9 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain Lycopene_cycl PF05834.12 gi|344210393|ref|YP_004794713.1| - 0.044 12.8 0.1 0.064 12.3 0.1 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein CbiJ PF02571.14 gi|344210393|ref|YP_004794713.1| - 0.045 13.2 0.4 0.095 12.2 0.4 1.5 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK 2-Hacid_dh_C PF02826.19 gi|344210393|ref|YP_004794713.1| - 0.1 12.0 0.1 0.1 12.0 0.1 2.6 3 0 0 3 3 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|344210393|ref|YP_004794713.1| - 0.12 11.0 0.1 0.19 10.4 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|344210393|ref|YP_004794713.1| - 0.24 10.6 0.6 0.51 9.6 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF2160 PF09928.9 gi|344210393|ref|YP_004794713.1| - 4.2 7.8 7.0 0.66 10.3 0.1 2.9 2 1 0 2 2 2 0 Predicted small integral membrane protein (DUF2160) 4HBT PF03061.22 gi|344210394|ref|YP_004794714.1| - 5.7e-15 55.4 0.7 8e-15 55.0 0.7 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|344210394|ref|YP_004794714.1| - 4.3e-06 26.9 0.0 6.4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|344210394|ref|YP_004794714.1| - 6.3e-05 23.4 0.1 7.8e-05 23.0 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily EF-hand_5 PF13202.6 gi|344210395|ref|YP_004794715.1| - 0.058 12.9 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 EF hand NUDIX PF00293.28 gi|344210396|ref|YP_004794716.1| - 1.9e-11 44.1 0.1 2.2e-11 43.9 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Fungal_trans_2 PF11951.8 gi|344210396|ref|YP_004794716.1| - 0.16 10.8 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Fungal specific transcription factor domain Thiolase_N PF00108.23 gi|344210397|ref|YP_004794717.1| - 3.3e-73 246.3 1.5 5.3e-73 245.6 1.5 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|344210397|ref|YP_004794717.1| - 2.5e-42 143.4 0.0 1.1e-41 141.3 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|344210397|ref|YP_004794717.1| - 5.7e-06 26.1 0.3 1.4e-05 24.8 0.3 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain zf-FLZ PF04570.14 gi|344210397|ref|YP_004794717.1| - 0.0085 15.5 0.1 0.016 14.7 0.1 1.4 1 0 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 ACP_syn_III PF08545.10 gi|344210397|ref|YP_004794717.1| - 0.055 13.3 2.0 0.68 9.8 0.0 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDE_Tnp_IS66 PF03050.14 gi|344210397|ref|YP_004794717.1| - 0.094 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Transposase IS66 family Pyridox_ox_2 PF12900.7 gi|344210398|ref|YP_004794718.1| - 4.2e-17 62.4 0.0 4.8e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344210398|ref|YP_004794718.1| - 2.1e-05 24.6 0.0 2.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase YjbR PF04237.13 gi|344210398|ref|YP_004794718.1| - 0.064 13.8 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 YjbR DUF1508 PF07411.12 gi|344210399|ref|YP_004794719.1| - 2.8e-86 283.2 26.8 2.3e-17 62.6 0.3 6.0 6 0 0 6 6 6 5 Domain of unknown function (DUF1508) Stimulus_sens_1 PF13756.6 gi|344210399|ref|YP_004794719.1| - 0.0023 18.5 13.2 5.2 7.7 0.0 6.1 4 2 2 6 6 5 1 Stimulus-sensing domain DUF2892 PF11127.8 gi|344210399|ref|YP_004794719.1| - 0.008 16.2 14.0 0.032 14.3 3.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF2892) Spore_III_AF PF09581.10 gi|344210399|ref|YP_004794719.1| - 0.015 15.4 0.5 0.034 14.2 0.5 1.5 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) TMEM238 PF15125.6 gi|344210399|ref|YP_004794719.1| - 0.023 14.9 1.0 0.023 14.9 1.0 3.0 3 0 0 3 3 3 0 TMEM238 protein family UPF0242 PF06785.11 gi|344210399|ref|YP_004794719.1| - 0.05 13.7 0.3 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF2157 PF09925.9 gi|344210399|ref|YP_004794719.1| - 0.077 12.8 6.6 2.4 7.9 3.8 2.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) DUF2298 PF10060.9 gi|344210399|ref|YP_004794719.1| - 0.083 11.6 3.1 0.12 11.0 3.1 1.1 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) ERM PF00769.19 gi|344210399|ref|YP_004794719.1| - 0.19 11.5 18.9 0.31 10.8 18.9 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Wzy_C PF04932.15 gi|344210399|ref|YP_004794719.1| - 0.19 11.3 4.6 0.59 9.7 4.6 1.9 1 1 0 1 1 1 0 O-Antigen ligase XK-related PF09815.9 gi|344210399|ref|YP_004794719.1| - 0.35 9.9 1.0 0.51 9.3 1.0 1.2 1 0 0 1 1 1 0 XK-related protein LapA_dom PF06305.11 gi|344210399|ref|YP_004794719.1| - 0.54 10.1 7.2 15 5.5 0.0 3.9 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain DUF3748 PF12566.8 gi|344210399|ref|YP_004794719.1| - 2 8.4 5.8 5.1 7.1 0.2 3.5 4 1 1 5 5 5 0 Protein of unknown function (DUF3748) DUF2721 PF11026.8 gi|344210399|ref|YP_004794719.1| - 2.1 8.2 4.2 28 4.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2721) G0-G1_switch_2 PF15103.6 gi|344210399|ref|YP_004794719.1| - 3.3 8.2 10.6 1.7 9.1 1.2 3.3 3 1 0 3 3 3 0 G0/G1 switch protein 2 YrhK PF14145.6 gi|344210399|ref|YP_004794719.1| - 6.8 6.6 9.5 21 5.1 0.4 3.4 2 1 1 3 3 3 0 YrhK-like protein Vfa1 PF08432.10 gi|344210399|ref|YP_004794719.1| - 8.2 6.7 8.5 14 6.0 8.5 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 BAF1_ABF1 PF04684.13 gi|344210399|ref|YP_004794719.1| - 8.3 5.3 9.0 12 4.9 9.0 1.1 1 0 0 1 1 1 0 BAF1 / ABF1 chromatin reorganising factor AAA PF00004.29 gi|344210400|ref|YP_004794720.1| - 1.3e-38 132.4 0.0 2.9e-38 131.3 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|344210400|ref|YP_004794720.1| - 1.3e-11 44.1 0.7 2.8e-11 43.0 0.0 2.0 2 0 0 2 2 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|344210400|ref|YP_004794720.1| - 3.3e-06 27.1 0.0 2.7e-05 24.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|344210400|ref|YP_004794720.1| - 0.00027 21.4 3.3 0.002 18.5 1.8 3.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344210400|ref|YP_004794720.1| - 0.00058 20.1 0.4 0.027 14.7 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|344210400|ref|YP_004794720.1| - 0.0006 20.1 0.3 0.0096 16.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|344210400|ref|YP_004794720.1| - 0.00061 19.6 0.0 0.0013 18.5 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|344210400|ref|YP_004794720.1| - 0.00077 19.6 0.2 0.0024 18.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|344210400|ref|YP_004794720.1| - 0.00086 19.9 0.1 0.0046 17.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|344210400|ref|YP_004794720.1| - 0.0021 17.6 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region Cytidylate_kin2 PF13189.6 gi|344210400|ref|YP_004794720.1| - 0.0034 17.5 0.0 0.012 15.8 0.0 1.9 1 0 0 1 1 1 1 Cytidylate kinase-like family IstB_IS21 PF01695.17 gi|344210400|ref|YP_004794720.1| - 0.0044 16.8 0.0 0.011 15.5 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.13 gi|344210400|ref|YP_004794720.1| - 0.0047 16.2 0.0 0.0083 15.4 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_2 PF07724.14 gi|344210400|ref|YP_004794720.1| - 0.0054 16.9 0.9 0.01 15.9 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|344210400|ref|YP_004794720.1| - 0.0056 15.9 0.1 0.0096 15.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Cytidylate_kin PF02224.18 gi|344210400|ref|YP_004794720.1| - 0.0076 16.0 0.5 0.069 12.9 0.0 2.6 2 1 1 3 3 3 1 Cytidylate kinase AAA_25 PF13481.6 gi|344210400|ref|YP_004794720.1| - 0.013 15.1 0.8 0.078 12.6 0.1 2.7 1 1 2 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|344210400|ref|YP_004794720.1| - 0.015 15.1 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|344210400|ref|YP_004794720.1| - 0.017 14.5 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|344210400|ref|YP_004794720.1| - 0.018 15.5 0.0 0.072 13.5 0.0 2.1 1 0 0 1 1 1 0 AAA domain SKI PF01202.22 gi|344210400|ref|YP_004794720.1| - 0.021 15.0 0.0 0.056 13.6 0.0 1.8 1 0 0 1 1 1 0 Shikimate kinase ABC_tran PF00005.27 gi|344210400|ref|YP_004794720.1| - 0.024 15.1 0.0 0.061 13.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|344210400|ref|YP_004794720.1| - 0.034 14.2 0.0 0.11 12.6 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma54_activ_2 PF14532.6 gi|344210400|ref|YP_004794720.1| - 0.047 13.8 0.0 0.26 11.4 0.0 2.1 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_3 PF07726.11 gi|344210400|ref|YP_004794720.1| - 0.048 13.5 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|344210400|ref|YP_004794720.1| - 0.06 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|344210400|ref|YP_004794720.1| - 0.063 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_8 PF12780.7 gi|344210400|ref|YP_004794720.1| - 0.14 11.4 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 Lactamase_B_2 PF12706.7 gi|344210402|ref|YP_004794722.1| - 6.2e-18 65.0 1.3 8.1e-18 64.7 1.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|344210402|ref|YP_004794722.1| - 0.0051 16.9 2.7 0.0051 16.9 2.7 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF533 PF04391.12 gi|344210403|ref|YP_004794723.1| - 0.24 10.9 2.3 0.37 10.4 2.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF533) Tannase PF07519.11 gi|344210404|ref|YP_004794724.1| - 0.01 14.8 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 0 Tannase and feruloyl esterase HTH_20 PF12840.7 gi|344210406|ref|YP_004794726.1| - 2e-05 24.5 0.0 5.5e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|344210406|ref|YP_004794726.1| - 0.13 12.2 8.2 0.26 11.3 3.9 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|344210406|ref|YP_004794726.1| - 4.4 7.4 7.9 8 6.5 0.2 3.4 3 0 0 3 3 3 0 PhnA Zinc-Ribbon eIF2_C PF09173.11 gi|344210407|ref|YP_004794727.1| - 3.5e-29 100.9 0.0 6.8e-29 100.0 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|344210407|ref|YP_004794727.1| - 7.2e-29 100.7 2.9 2.8e-28 98.8 2.9 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|344210407|ref|YP_004794727.1| - 4.2e-06 26.8 0.3 0.00046 20.1 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|344210407|ref|YP_004794727.1| - 9e-05 22.5 0.0 0.00025 21.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.25 gi|344210407|ref|YP_004794727.1| - 0.00031 21.1 1.1 0.00091 19.6 1.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 FeoB_N PF02421.18 gi|344210407|ref|YP_004794727.1| - 0.0055 16.2 0.3 2.2 7.8 0.1 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|344210407|ref|YP_004794727.1| - 0.023 14.5 0.2 0.14 11.9 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|344210407|ref|YP_004794727.1| - 0.066 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|344210407|ref|YP_004794727.1| - 0.068 12.6 0.1 1.7 8.0 0.1 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit PIN_9 PF18477.1 gi|344210408|ref|YP_004794728.1| - 1.9e-41 141.0 0.6 2.1e-41 140.8 0.6 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|344210408|ref|YP_004794728.1| - 6.1e-06 25.9 0.5 8.2e-06 25.5 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.6 gi|344210408|ref|YP_004794728.1| - 0.032 14.5 0.0 0.074 13.3 0.0 1.7 1 1 0 1 1 1 0 PIN domain PIN_3 PF13470.6 gi|344210408|ref|YP_004794728.1| - 0.058 14.2 8.2 0.037 14.8 4.7 1.9 1 1 1 2 2 2 0 PIN domain DUF1471 PF07338.13 gi|344210408|ref|YP_004794728.1| - 0.71 9.9 3.8 1.2 9.2 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) S1 PF00575.23 gi|344210409|ref|YP_004794729.1| - 7.5e-15 55.0 0.2 1.4e-14 54.1 0.2 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.17 gi|344210409|ref|YP_004794729.1| - 4.9e-13 49.2 0.0 8e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 RNA_pol_Rbc25 PF08292.12 gi|344210409|ref|YP_004794729.1| - 0.033 14.4 0.0 0.049 13.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 S1_2 PF13509.6 gi|344210409|ref|YP_004794729.1| - 0.11 12.6 0.0 2.3 8.3 0.0 2.3 1 1 1 2 2 2 0 S1 domain KH_6 PF15985.5 gi|344210409|ref|YP_004794729.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 KH domain PUA_3 PF17785.1 gi|344210409|ref|YP_004794729.1| - 0.2 11.5 0.9 0.87 9.4 0.9 2.2 1 1 0 1 1 1 0 PUA-like domain Spt4 PF06093.13 gi|344210410|ref|YP_004794730.1| - 9.5e-13 48.1 0.1 1.2e-12 47.7 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Nudix_N_2 PF14803.6 gi|344210410|ref|YP_004794730.1| - 0.66 9.9 6.2 1.8 8.5 1.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF359 PF04019.12 gi|344210411|ref|YP_004794731.1| - 2.3e-39 133.9 0.0 3.1e-39 133.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) HisKA PF00512.25 gi|344210411|ref|YP_004794731.1| - 0.0071 16.4 0.2 0.49 10.5 0.0 2.6 2 1 0 2 2 2 2 His Kinase A (phospho-acceptor) domain UBA_4 PF14555.6 gi|344210411|ref|YP_004794731.1| - 0.058 13.2 0.1 0.12 12.3 0.1 1.5 1 0 0 1 1 1 0 UBA-like domain UPF0020 PF01170.18 gi|344210412|ref|YP_004794732.1| - 3.3e-20 72.6 0.0 9.3e-19 67.9 0.0 2.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|344210412|ref|YP_004794732.1| - 3.2e-05 24.6 0.9 0.00013 22.6 0.1 2.5 3 1 0 3 3 3 1 Methyltransferase domain AviRa PF11599.8 gi|344210412|ref|YP_004794732.1| - 5.1e-05 22.8 0.0 0.032 13.7 0.0 2.4 1 1 1 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_11 PF08241.12 gi|344210412|ref|YP_004794732.1| - 0.0021 18.7 0.0 0.007 17.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|344210412|ref|YP_004794732.1| - 0.0036 17.4 0.0 0.0054 16.8 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Methyltransf_31 PF13847.6 gi|344210412|ref|YP_004794732.1| - 0.016 15.0 0.0 0.066 13.0 0.1 1.8 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.16 gi|344210412|ref|YP_004794732.1| - 0.055 12.7 0.0 0.091 12.0 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Cons_hypoth95 PF03602.15 gi|344210412|ref|YP_004794732.1| - 0.11 12.1 0.0 0.39 10.4 0.0 1.8 1 1 0 1 1 1 0 Conserved hypothetical protein 95 HalOD1 PF18545.1 gi|344210414|ref|YP_004794734.1| - 4.3e-18 65.3 0.3 4.8e-18 65.2 0.3 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 HisG PF01634.18 gi|344210415|ref|YP_004794735.1| - 1.2e-50 171.6 0.3 1.8e-50 171.0 0.3 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|344210415|ref|YP_004794735.1| - 2.2e-26 91.8 0.1 3.9e-26 91.0 0.1 1.4 1 0 0 1 1 1 1 HisG, C-terminal domain MFS_1 PF07690.16 gi|344210416|ref|YP_004794736.1| - 1.8e-42 145.5 51.6 4e-31 108.2 28.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344210416|ref|YP_004794736.1| - 0.00015 20.8 5.6 0.00015 20.8 5.6 2.2 1 1 0 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|344210416|ref|YP_004794736.1| - 0.38 9.5 8.1 0.98 8.1 0.2 2.5 2 1 1 3 3 3 0 LacY proton/sugar symporter Amidohydro_1 PF01979.20 gi|344210417|ref|YP_004794737.1| - 2.6e-70 237.4 4.6 3e-70 237.2 4.6 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210417|ref|YP_004794737.1| - 3e-19 69.9 19.6 4.9e-15 56.0 13.8 2.3 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|344210417|ref|YP_004794737.1| - 4.5e-06 26.2 0.0 8.7e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase PMSI1 PF15322.6 gi|344210418|ref|YP_004794738.1| - 0.099 12.1 1.0 0.2 11.1 1.0 1.4 1 0 0 1 1 1 0 Protein missing in infertile sperm 1, putative AdoHcyase PF05221.17 gi|344210419|ref|YP_004794739.1| - 5.1e-49 167.0 0.0 6.3e-26 91.2 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|344210419|ref|YP_004794739.1| - 3.8e-48 163.6 1.5 4.3e-48 163.4 0.3 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344210419|ref|YP_004794739.1| - 3.5e-10 39.5 0.1 6e-10 38.8 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|344210419|ref|YP_004794739.1| - 1.1e-05 25.0 0.6 2.2e-05 24.1 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|344210419|ref|YP_004794739.1| - 0.002 18.2 0.0 0.0037 17.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|344210419|ref|YP_004794739.1| - 0.0045 16.8 0.2 0.0072 16.1 0.2 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TrkA_N PF02254.18 gi|344210419|ref|YP_004794739.1| - 0.017 15.4 0.1 0.039 14.2 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain Urocanase PF01175.18 gi|344210419|ref|YP_004794739.1| - 0.063 12.9 0.2 0.11 12.1 0.2 1.3 1 0 0 1 1 1 0 Urocanase Rossmann-like domain Hexapep PF00132.24 gi|344210420|ref|YP_004794740.1| - 1.6e-16 59.3 10.2 2.5e-09 36.5 3.7 3.6 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344210420|ref|YP_004794740.1| - 7.3e-10 38.4 13.8 1.7e-08 34.1 4.4 4.0 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|344210420|ref|YP_004794740.1| - 0.0034 16.4 0.0 0.0075 15.3 0.0 1.5 1 1 1 2 2 2 1 L-fucokinase DUF4954 PF16314.5 gi|344210420|ref|YP_004794740.1| - 0.48 8.5 2.5 2.2 6.3 0.4 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) DNA_primase_lrg PF04104.14 gi|344210422|ref|YP_004794742.1| - 1.9e-37 129.1 0.0 3.8e-37 128.2 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Siah-Interact_N PF09032.11 gi|344210422|ref|YP_004794742.1| - 0.07 13.4 0.7 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 Siah interacting protein, N terminal Tad PF13400.6 gi|344210423|ref|YP_004794743.1| - 0.3 11.4 6.1 1.2 9.5 0.7 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like MMPL PF03176.15 gi|344210423|ref|YP_004794743.1| - 0.63 8.9 6.0 0.69 8.8 6.0 1.0 1 0 0 1 1 1 0 MMPL family SWIM PF04434.17 gi|344210424|ref|YP_004794744.1| - 6.3e-05 22.5 0.1 0.00015 21.4 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger Nudix_N_2 PF14803.6 gi|344210424|ref|YP_004794744.1| - 0.038 13.9 0.1 0.038 13.9 0.1 2.7 3 0 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|344210424|ref|YP_004794744.1| - 0.42 10.7 3.3 0.94 9.6 3.3 1.6 1 1 0 1 1 1 0 Transposase zinc-binding domain Hjc PF01870.18 gi|344210425|ref|YP_004794745.1| - 7e-30 102.9 0.0 9.6e-30 102.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF4382 PF14321.6 gi|344210426|ref|YP_004794746.1| - 1.4e-20 73.9 4.8 1.4e-20 73.9 4.8 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4382) TAT_signal PF10518.9 gi|344210426|ref|YP_004794746.1| - 0.75 9.7 3.5 1.4 8.9 3.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence RR_TM4-6 PF06459.12 gi|344210426|ref|YP_004794746.1| - 2.1 8.1 11.8 0.6 9.9 2.9 2.1 2 0 0 2 2 2 0 Ryanodine Receptor TM 4-6 RNA_pol_Rpc4 PF05132.14 gi|344210426|ref|YP_004794746.1| - 9.4 6.7 10.4 2.6 8.5 0.7 2.6 3 0 0 3 3 3 0 RNA polymerase III RPC4 Virul_fac_BrkB PF03631.15 gi|344210427|ref|YP_004794747.1| - 0.0016 18.1 5.3 0.0021 17.7 5.3 1.2 1 0 0 1 1 1 1 Virulence factor BrkB Abhydrolase_6 PF12697.7 gi|344210428|ref|YP_004794748.1| - 2.4e-13 51.2 10.0 3e-13 50.9 10.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344210428|ref|YP_004794748.1| - 9.8e-13 48.3 0.1 4.1e-11 43.0 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344210428|ref|YP_004794748.1| - 4.5e-08 32.7 0.0 6.7e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 FSH1 PF03959.13 gi|344210428|ref|YP_004794748.1| - 0.058 13.1 0.0 3.1 7.4 0.0 2.1 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PGAP1 PF07819.13 gi|344210428|ref|YP_004794748.1| - 0.071 12.8 0.0 0.098 12.4 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein PCNA_N PF00705.18 gi|344210429|ref|YP_004794749.1| - 2.2e-09 37.1 0.1 4.2e-09 36.2 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|344210429|ref|YP_004794749.1| - 9.6e-05 22.6 0.0 0.00026 21.1 0.0 1.9 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|344210429|ref|YP_004794749.1| - 0.11 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Rad9 Cu-oxidase_3 PF07732.15 gi|344210430|ref|YP_004794750.1| - 3.7e-14 52.8 0.1 6.6e-14 51.9 0.1 1.4 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|344210430|ref|YP_004794750.1| - 1.9e-09 37.3 0.4 1.3e-05 25.0 0.0 3.3 3 2 0 3 3 3 2 Multicopper oxidase Copper-bind PF00127.20 gi|344210430|ref|YP_004794750.1| - 0.0001 22.7 0.6 0.0024 18.3 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|344210430|ref|YP_004794750.1| - 0.0015 18.6 0.0 0.0043 17.1 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain FtsJ PF01728.19 gi|344210431|ref|YP_004794751.1| - 4.5e-54 183.2 0.0 5.4e-54 183.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|344210431|ref|YP_004794751.1| - 6.6e-15 54.9 1.8 1.3e-14 53.9 1.8 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|344210431|ref|YP_004794751.1| - 0.0061 16.4 0.0 0.028 14.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210431|ref|YP_004794751.1| - 0.054 14.2 0.1 0.23 12.2 0.1 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210431|ref|YP_004794751.1| - 0.18 11.6 0.0 0.29 10.9 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Vut_1 PF02592.15 gi|344210432|ref|YP_004794752.1| - 1.3e-50 171.6 5.2 1.3e-50 171.6 5.2 1.7 2 0 0 2 2 2 1 Putative vitamin uptake transporter RHH_1 PF01402.21 gi|344210433|ref|YP_004794753.1| - 0.013 15.4 0.3 0.033 14.1 0.1 1.8 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|344210433|ref|YP_004794753.1| - 0.049 13.8 0.0 0.049 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family TatC PF00902.18 gi|344210434|ref|YP_004794754.1| - 4.9e-66 222.5 45.7 7.9e-41 140.2 13.5 2.8 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) DUF2207 PF09972.9 gi|344210434|ref|YP_004794754.1| - 0.34 9.6 0.0 0.34 9.6 0.0 4.1 2 2 1 3 3 3 0 Predicted membrane protein (DUF2207) TatC PF00902.18 gi|344210435|ref|YP_004794755.1| - 1.8e-44 152.1 13.3 1.8e-44 152.1 13.3 2.4 3 0 0 3 3 3 1 Sec-independent protein translocase protein (TatC) DHHC PF01529.20 gi|344210435|ref|YP_004794755.1| - 0.23 11.6 4.0 0.3 11.2 0.8 2.2 2 0 0 2 2 2 0 DHHC palmitoyltransferase MadM PF03818.13 gi|344210435|ref|YP_004794755.1| - 3.6 7.5 7.9 21 5.1 0.3 3.7 3 0 0 3 3 3 0 Malonate/sodium symporter MadM subunit His_Phos_1 PF00300.22 gi|344210436|ref|YP_004794756.1| - 4.3e-48 163.6 0.2 4.7e-48 163.5 0.2 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.22 gi|344210436|ref|YP_004794756.1| - 0.0054 16.1 0.0 0.008 15.6 0.0 1.3 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) tRNA_Me_trans PF03054.16 gi|344210437|ref|YP_004794757.1| - 2.4e-09 36.4 0.1 8.6e-06 24.8 0.2 2.7 2 1 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|344210437|ref|YP_004794757.1| - 4.8e-09 36.3 0.6 7.7e-09 35.7 0.4 1.3 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|344210437|ref|YP_004794757.1| - 8.7e-09 34.8 0.0 1.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|344210437|ref|YP_004794757.1| - 0.00015 21.3 0.0 0.00049 19.7 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|344210437|ref|YP_004794757.1| - 0.0038 17.0 0.2 0.011 15.5 0.1 1.9 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|344210437|ref|YP_004794757.1| - 0.01 15.2 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase ThiI PF02568.14 gi|344210437|ref|YP_004794757.1| - 0.023 14.3 0.0 0.04 13.5 0.0 1.4 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueH PF02677.14 gi|344210437|ref|YP_004794757.1| - 0.035 14.2 0.0 0.076 13.1 0.0 1.5 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH HHH_5 PF14520.6 gi|344210438|ref|YP_004794758.1| - 1.5e-06 28.7 0.2 1.5e-06 28.7 0.2 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain MutS_V PF00488.21 gi|344210438|ref|YP_004794758.1| - 1.1e-05 25.6 0.0 0.00017 21.7 0.0 2.4 2 0 0 2 2 2 1 MutS domain V HHH PF00633.23 gi|344210438|ref|YP_004794758.1| - 4.6e-05 23.1 3.3 0.0044 16.8 0.1 3.7 3 0 0 3 3 3 2 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|344210438|ref|YP_004794758.1| - 0.12 12.7 0.0 0.34 11.3 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif DUF1598 PF07643.11 gi|344210438|ref|YP_004794758.1| - 0.17 12.1 0.0 3.5 7.9 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1598) PCP_red PF08369.10 gi|344210438|ref|YP_004794758.1| - 7.2 6.9 7.3 3.8 7.8 0.1 3.6 3 0 0 3 3 3 0 Proto-chlorophyllide reductase 57 kD subunit AAA_16 PF13191.6 gi|344210439|ref|YP_004794759.1| - 1.1e-11 45.5 1.3 1.1e-09 38.9 0.1 2.8 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344210439|ref|YP_004794759.1| - 3.6e-09 37.0 0.0 8.3e-09 35.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344210439|ref|YP_004794759.1| - 2.3e-06 28.1 0.0 5.4e-06 26.9 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|344210439|ref|YP_004794759.1| - 2.3e-05 24.3 0.0 0.00026 20.9 0.0 2.7 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_30 PF13604.6 gi|344210439|ref|YP_004794759.1| - 0.0025 17.6 0.1 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain TIP49_C PF17856.1 gi|344210439|ref|YP_004794759.1| - 0.0028 17.8 0.0 0.0078 16.3 0.0 1.7 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA_7 PF12775.7 gi|344210439|ref|YP_004794759.1| - 0.0032 17.0 0.0 0.024 14.2 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region Rad17 PF03215.15 gi|344210439|ref|YP_004794759.1| - 0.005 16.8 0.0 0.026 14.4 0.0 2.1 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_35 PF14516.6 gi|344210439|ref|YP_004794759.1| - 0.005 15.7 0.1 0.039 12.8 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain Sigma54_activat PF00158.26 gi|344210439|ref|YP_004794759.1| - 0.006 16.3 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|344210439|ref|YP_004794759.1| - 0.0085 15.8 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|344210439|ref|YP_004794759.1| - 0.01 15.7 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|344210439|ref|YP_004794759.1| - 0.012 14.7 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Gtr1_RagA PF04670.12 gi|344210439|ref|YP_004794759.1| - 0.012 14.9 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_33 PF13671.6 gi|344210439|ref|YP_004794759.1| - 0.015 15.5 0.0 0.038 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|344210439|ref|YP_004794759.1| - 0.016 14.4 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|344210439|ref|YP_004794759.1| - 0.02 14.2 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|344210439|ref|YP_004794759.1| - 0.028 14.2 0.0 0.059 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|344210439|ref|YP_004794759.1| - 0.035 14.1 0.1 0.25 11.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain RP854 PF17460.2 gi|344210439|ref|YP_004794759.1| - 0.059 13.1 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein RP854 AAA_19 PF13245.6 gi|344210439|ref|YP_004794759.1| - 0.061 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|344210439|ref|YP_004794759.1| - 0.076 13.0 0.0 0.2 11.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|344210439|ref|YP_004794759.1| - 0.088 13.2 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|344210439|ref|YP_004794759.1| - 0.095 12.4 0.5 2.5 7.8 0.5 2.4 1 1 0 1 1 1 0 IstB-like ATP binding protein Pox_A12 PF04651.13 gi|344210441|ref|YP_004794761.1| - 0.2 11.7 0.0 0.2 11.7 0.0 1.0 1 0 0 1 1 1 0 Poxvirus A12 protein Ribonuc_L-PSP PF01042.21 gi|344210442|ref|YP_004794762.1| - 1.1e-26 93.2 0.7 1.4e-26 92.9 0.7 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Methyltrn_RNA_3 PF02598.17 gi|344210442|ref|YP_004794762.1| - 0.073 12.6 0.1 0.076 12.5 0.1 1.1 1 0 0 1 1 1 0 Putative RNA methyltransferase MatE PF01554.18 gi|344210443|ref|YP_004794763.1| - 9.2e-51 171.7 29.5 2.6e-28 98.7 4.7 3.3 2 2 1 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|344210443|ref|YP_004794763.1| - 3.3e-08 33.7 9.2 3.3e-08 33.7 9.2 4.4 2 2 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MaoC_dehydratas PF01575.19 gi|344210444|ref|YP_004794764.1| - 9.6e-08 31.6 0.0 3.9e-07 29.7 0.0 1.9 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.22 gi|344210444|ref|YP_004794764.1| - 0.00063 20.0 0.2 0.0013 19.0 0.0 1.6 2 0 0 2 2 2 1 Thioesterase superfamily MaoC_dehydrat_N PF13452.6 gi|344210444|ref|YP_004794764.1| - 0.011 15.8 0.0 0.28 11.3 0.0 2.2 1 1 0 1 1 1 0 N-terminal half of MaoC dehydratase Fer4_15 PF13459.6 gi|344210445|ref|YP_004794765.1| - 1.2e-21 77.2 4.8 1.4e-21 76.9 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|344210445|ref|YP_004794765.1| - 6.3e-08 33.0 2.1 1.3e-07 32.1 2.1 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|344210445|ref|YP_004794765.1| - 0.035 13.9 1.3 2.3 8.2 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DEAD PF00270.29 gi|344210446|ref|YP_004794766.1| - 4.3e-23 82.0 0.0 7.3e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|344210446|ref|YP_004794766.1| - 4.2e-07 30.3 0.0 7.3e-06 26.3 0.0 2.6 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|344210446|ref|YP_004794766.1| - 0.0001 22.9 1.8 0.00022 21.8 0.1 2.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|344210446|ref|YP_004794766.1| - 0.0033 17.2 0.1 0.011 15.6 0.1 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda CGI-121 PF08617.10 gi|344210447|ref|YP_004794767.1| - 8.5e-10 39.0 0.0 9.6e-10 38.8 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MipA PF06629.12 gi|344210447|ref|YP_004794767.1| - 0.00057 20.2 0.0 0.00069 19.9 0.0 1.1 1 0 0 1 1 1 1 MltA-interacting protein MipA ParB_C PF18064.1 gi|344210448|ref|YP_004794768.1| - 0.13 12.4 0.1 0.13 12.4 0.1 2.0 2 0 0 2 2 2 0 Centromere-binding protein ParB C-terminal Oxidored_FMN PF00724.20 gi|344210449|ref|YP_004794769.1| - 1.6e-28 100.0 0.0 1.1e-26 94.0 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Auto_anti-p27 PF06677.12 gi|344210449|ref|YP_004794769.1| - 0.02 15.0 0.4 0.04 14.1 0.4 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Dus PF01207.17 gi|344210449|ref|YP_004794769.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Abhydrolase_6 PF12697.7 gi|344210450|ref|YP_004794770.1| - 5.2e-28 99.1 6.8 6.1e-28 98.9 6.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344210450|ref|YP_004794770.1| - 3.7e-20 72.7 0.1 6.4e-14 52.2 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344210450|ref|YP_004794770.1| - 1.5e-14 53.8 0.1 2.4e-13 49.9 0.1 2.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_2 PF02230.16 gi|344210450|ref|YP_004794770.1| - 0.0038 17.0 0.0 1.6 8.5 0.0 3.0 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Thioesterase PF00975.20 gi|344210450|ref|YP_004794770.1| - 0.0099 16.0 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.10 gi|344210450|ref|YP_004794770.1| - 0.022 14.9 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_5 PF12695.7 gi|344210450|ref|YP_004794770.1| - 0.094 12.5 0.0 0.65 9.8 0.0 1.9 2 0 0 2 2 2 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|344210450|ref|YP_004794770.1| - 0.19 11.3 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) MaoC_dehydratas PF01575.19 gi|344210451|ref|YP_004794771.1| - 1.6e-24 85.8 0.0 2.5e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344210451|ref|YP_004794771.1| - 1.1e-12 48.3 0.0 5.2e-12 46.0 0.0 2.1 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|344210451|ref|YP_004794771.1| - 0.0064 16.8 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 Thioesterase superfamily UreD PF01774.17 gi|344210451|ref|YP_004794771.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.3 1 1 0 1 1 1 0 UreD urease accessory protein AbrB-like PF14250.6 gi|344210452|ref|YP_004794772.1| - 0.028 14.5 0.0 0.04 14.0 0.0 1.3 1 1 0 1 1 1 0 AbrB-like transcriptional regulator MazE_antitoxin PF04014.18 gi|344210452|ref|YP_004794772.1| - 0.044 13.7 0.8 0.11 12.4 0.8 1.7 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin FlxA PF14282.6 gi|344210453|ref|YP_004794773.1| - 0.0002 21.3 4.0 0.0002 21.3 4.0 2.4 2 1 0 2 2 2 1 FlxA-like protein CdvA PF18822.1 gi|344210453|ref|YP_004794773.1| - 0.00042 20.1 10.5 0.035 13.9 0.1 2.7 2 1 1 3 3 3 2 CdvA-like coiled-coil domain Filament PF00038.21 gi|344210453|ref|YP_004794773.1| - 0.00043 20.0 19.5 0.00054 19.6 19.5 1.0 1 0 0 1 1 1 1 Intermediate filament protein Apolipoprotein PF01442.18 gi|344210453|ref|YP_004794773.1| - 0.0005 20.0 20.8 0.0038 17.1 4.9 2.3 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.12 gi|344210453|ref|YP_004794773.1| - 0.0023 18.4 13.3 0.012 16.1 5.4 3.4 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Erp_C PF06780.11 gi|344210453|ref|YP_004794773.1| - 0.0028 17.7 3.8 0.0056 16.7 3.6 1.7 1 1 0 1 1 1 1 Erp protein C-terminus Spc7 PF08317.11 gi|344210453|ref|YP_004794773.1| - 0.0032 16.4 11.7 0.0032 16.4 11.7 2.0 1 1 0 1 1 1 1 Spc7 kinetochore protein Phage_GP20 PF06810.11 gi|344210453|ref|YP_004794773.1| - 0.0038 17.0 6.2 0.0038 17.0 6.2 2.5 1 1 1 2 2 2 1 Phage minor structural protein GP20 Prominin PF05478.11 gi|344210453|ref|YP_004794773.1| - 0.0058 14.7 7.6 0.0089 14.0 7.6 1.3 1 0 0 1 1 1 1 Prominin ApoLp-III PF07464.11 gi|344210453|ref|YP_004794773.1| - 0.0084 16.2 11.1 0.0084 16.2 11.1 2.5 1 1 2 3 3 3 1 Apolipophorin-III precursor (apoLp-III) Cauli_AT PF03233.13 gi|344210453|ref|YP_004794773.1| - 0.01 15.8 1.2 0.01 15.8 1.2 1.8 1 1 1 2 2 2 0 Aphid transmission protein Baculo_PEP_C PF04513.12 gi|344210453|ref|YP_004794773.1| - 0.011 15.8 8.8 0.91 9.6 1.2 2.8 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus UPF0242 PF06785.11 gi|344210453|ref|YP_004794773.1| - 0.014 15.6 12.3 0.014 15.6 12.3 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus YtxH PF12732.7 gi|344210453|ref|YP_004794773.1| - 0.016 15.7 11.5 5.9 7.5 7.4 3.4 1 1 1 2 2 2 0 YtxH-like protein P35 PF02331.15 gi|344210453|ref|YP_004794773.1| - 0.022 14.1 0.0 0.03 13.7 0.0 1.2 1 0 0 1 1 1 0 Apoptosis preventing protein DUF148 PF02520.17 gi|344210453|ref|YP_004794773.1| - 0.025 14.7 16.0 0.057 13.5 0.1 3.0 1 1 2 3 3 3 0 Domain of unknown function DUF148 pP_pnuc_1 PF18165.1 gi|344210453|ref|YP_004794773.1| - 0.029 14.2 2.1 0.053 13.4 0.9 2.0 1 1 1 2 2 2 0 Predicted pPIWI-associating nuclease DASH_Duo1 PF08651.10 gi|344210453|ref|YP_004794773.1| - 0.046 13.5 4.6 1.9 8.3 0.2 3.5 2 1 0 3 3 3 0 DASH complex subunit Duo1 WXG100 PF06013.12 gi|344210453|ref|YP_004794773.1| - 0.05 13.9 15.8 0.79 10.0 1.8 4.2 1 1 3 4 4 4 0 Proteins of 100 residues with WXG DUF883 PF05957.13 gi|344210453|ref|YP_004794773.1| - 0.095 13.3 10.8 0.56 10.8 6.0 2.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF3584 PF12128.8 gi|344210453|ref|YP_004794773.1| - 0.097 10.2 15.7 0.13 9.7 15.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Nmad5 PF18757.1 gi|344210453|ref|YP_004794773.1| - 0.13 12.4 7.1 0.13 12.5 6.2 1.5 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 DUF1664 PF07889.12 gi|344210453|ref|YP_004794773.1| - 0.13 12.3 14.6 3.7 7.6 8.4 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF885 PF05960.11 gi|344210453|ref|YP_004794773.1| - 0.17 11.5 10.5 0.25 10.9 10.5 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) ApoO PF09769.9 gi|344210453|ref|YP_004794773.1| - 0.23 11.4 7.3 2.4 8.1 0.7 3.0 1 1 0 2 2 2 0 Apolipoprotein O Sec8_exocyst PF04048.14 gi|344210453|ref|YP_004794773.1| - 0.24 11.3 7.6 0.053 13.4 1.6 2.4 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain Mod_r PF07200.13 gi|344210453|ref|YP_004794773.1| - 0.31 11.1 15.0 0.059 13.5 6.3 2.6 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.11 gi|344210453|ref|YP_004794773.1| - 0.58 10.6 17.7 1.8 9.0 4.2 4.2 3 1 1 4 4 4 0 Flagella accessory protein C (FlaC) TMEM173 PF15009.6 gi|344210453|ref|YP_004794773.1| - 0.65 9.1 4.6 8.3 5.5 0.2 2.1 2 0 0 2 2 2 0 Transmembrane protein 173 Cytochrom_C_2 PF01322.20 gi|344210453|ref|YP_004794773.1| - 0.67 10.9 10.2 0.24 12.3 5.6 2.2 2 1 0 2 2 2 0 Cytochrome C' Fib_alpha PF08702.10 gi|344210453|ref|YP_004794773.1| - 0.82 9.9 12.6 1.3 9.2 5.1 2.8 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family RmuC PF02646.16 gi|344210453|ref|YP_004794773.1| - 0.84 8.7 14.1 0.65 9.1 5.6 2.8 1 1 1 3 3 3 0 RmuC family Acetyltransf_14 PF03421.16 gi|344210453|ref|YP_004794773.1| - 0.88 9.6 7.8 1.5 8.9 2.1 2.1 1 1 1 2 2 2 0 YopJ Serine/Threonine acetyltransferase Muted PF14942.6 gi|344210453|ref|YP_004794773.1| - 0.92 9.8 17.0 3 8.2 3.2 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Exonuc_VII_L PF02601.15 gi|344210453|ref|YP_004794773.1| - 0.92 9.0 8.7 2.3 7.7 8.7 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit ISG65-75 PF11727.8 gi|344210453|ref|YP_004794773.1| - 0.94 8.7 8.5 1.1 8.5 7.8 1.5 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF948 PF06103.11 gi|344210453|ref|YP_004794773.1| - 0.95 9.8 12.8 29 5.0 9.2 3.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Allexi_40kDa PF05549.11 gi|344210453|ref|YP_004794773.1| - 0.98 8.9 5.6 1.7 8.1 0.3 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein T2SSF PF00482.23 gi|344210453|ref|YP_004794773.1| - 1.3 8.9 4.9 4.1 7.4 4.2 2.1 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F DUF2452 PF10504.9 gi|344210453|ref|YP_004794773.1| - 1.4 8.4 8.3 0.63 9.5 5.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2452) Mce4_CUP1 PF11887.8 gi|344210453|ref|YP_004794773.1| - 1.5 8.2 5.8 8.2 5.8 0.1 2.8 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Tweety PF04906.13 gi|344210453|ref|YP_004794773.1| - 1.6 7.3 6.6 3.2 6.3 0.2 2.4 1 1 1 2 2 2 0 Tweety AAA_23 PF13476.6 gi|344210453|ref|YP_004794773.1| - 1.8 9.1 11.0 2.8 8.4 11.0 1.3 1 1 0 1 1 1 0 AAA domain Syntaxin-6_N PF09177.11 gi|344210453|ref|YP_004794773.1| - 1.9 9.1 11.3 3e+02 2.1 11.0 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal FUSC PF04632.12 gi|344210453|ref|YP_004794773.1| - 2 6.8 7.8 2.7 6.4 7.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family AAA_32 PF13654.6 gi|344210453|ref|YP_004794773.1| - 2.4 6.9 18.0 3 6.5 4.8 2.0 1 1 1 2 2 2 0 AAA domain UPF0184 PF03670.13 gi|344210453|ref|YP_004794773.1| - 2.6 8.5 9.0 8.9 6.8 5.6 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) Spectrin PF00435.21 gi|344210453|ref|YP_004794773.1| - 3 8.4 14.0 2.8 8.5 9.2 2.6 1 1 1 2 2 2 0 Spectrin repeat GCIP PF13324.6 gi|344210453|ref|YP_004794773.1| - 3 7.4 13.6 4.1 6.9 13.5 1.4 1 1 0 1 1 1 0 Grap2 and cyclin-D-interacting Remorin_C PF03763.13 gi|344210453|ref|YP_004794773.1| - 3.8 7.4 9.9 0.93 9.4 5.6 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region Laminin_II PF06009.12 gi|344210453|ref|YP_004794773.1| - 3.9 7.5 13.0 2.3 8.2 6.3 2.9 1 1 1 2 2 2 0 Laminin Domain II DUF2524 PF10732.9 gi|344210453|ref|YP_004794773.1| - 4 7.8 17.0 0.35 11.2 9.7 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2524) SKA2 PF16740.5 gi|344210453|ref|YP_004794773.1| - 4.6 7.1 15.7 0.99 9.2 4.3 3.3 1 1 3 4 4 4 0 Spindle and kinetochore-associated protein 2 DUF16 PF01519.16 gi|344210453|ref|YP_004794773.1| - 5.6 7.5 19.2 20 5.8 2.3 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 CHDCT2 PF08074.11 gi|344210453|ref|YP_004794773.1| - 5.8 7.1 9.3 13 6.0 1.5 2.1 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain TPR_MLP1_2 PF07926.12 gi|344210453|ref|YP_004794773.1| - 6.6 6.8 22.2 0.31 11.1 12.4 2.5 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein MtrG PF04210.13 gi|344210453|ref|YP_004794773.1| - 7.6 6.5 7.2 1.2 9.1 2.3 2.2 2 1 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G Sas10_Utp3 PF04000.15 gi|344210453|ref|YP_004794773.1| - 7.8 7.2 8.8 66 4.2 4.1 3.3 2 1 0 2 2 2 0 Sas10/Utp3/C1D family Snapin_Pallidin PF14712.6 gi|344210453|ref|YP_004794773.1| - 8.2 6.9 11.9 21 5.6 3.2 3.2 1 1 2 3 3 3 0 Snapin/Pallidin BST2 PF16716.5 gi|344210453|ref|YP_004794773.1| - 9.5 6.9 14.8 0.44 11.1 6.6 2.3 1 1 0 2 2 2 0 Bone marrow stromal antigen 2 PHA_synth_III_E PF09712.10 gi|344210454|ref|YP_004794774.1| - 7.5e-15 54.8 12.0 1.4e-13 50.7 2.2 2.1 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.11 gi|344210454|ref|YP_004794774.1| - 4.7e-06 26.6 0.7 4.7e-06 26.6 0.7 2.4 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin_2 PF09361.10 gi|344210454|ref|YP_004794774.1| - 0.0036 17.5 11.4 0.31 11.3 1.0 3.2 2 1 0 2 2 2 2 Phasin protein FliD_C PF07195.12 gi|344210454|ref|YP_004794774.1| - 0.013 15.0 1.4 0.065 12.7 1.4 2.0 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TPALS PF18178.1 gi|344210454|ref|YP_004794774.1| - 0.024 14.1 0.6 0.061 12.7 0.0 1.8 2 0 0 2 2 2 0 TIR- and PNP-associating SLOG family BMFP PF04380.13 gi|344210454|ref|YP_004794774.1| - 0.036 14.5 3.6 0.036 14.5 3.6 2.7 3 0 0 3 3 3 0 Membrane fusogenic activity dCache_1 PF02743.18 gi|344210454|ref|YP_004794774.1| - 0.053 13.3 0.5 0.089 12.6 0.3 1.4 1 1 0 1 1 1 0 Cache domain IL34 PF15036.6 gi|344210454|ref|YP_004794774.1| - 0.091 12.8 0.1 14 5.7 0.2 2.3 1 1 0 2 2 2 0 Interleukin 34 Lant_dehydr_C PF14028.6 gi|344210454|ref|YP_004794774.1| - 0.11 12.0 7.3 1.5 8.3 7.3 2.0 1 1 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term DUF29 PF01724.16 gi|344210454|ref|YP_004794774.1| - 0.18 12.0 7.1 1.8 8.8 0.5 2.6 2 1 0 2 2 2 0 Domain of unknown function DUF29 HK97-gp10_like PF04883.12 gi|344210454|ref|YP_004794774.1| - 0.2 12.7 1.0 11 7.1 0.1 2.5 2 1 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component Tape_meas_lam_C PF09718.10 gi|344210454|ref|YP_004794774.1| - 0.21 11.7 14.7 1.2 9.3 1.6 3.2 3 0 0 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Sulfotransfer_4 PF17784.1 gi|344210454|ref|YP_004794774.1| - 0.31 10.8 3.6 3.6 7.4 1.0 2.4 1 1 1 2 2 2 0 Sulfotransferase domain Uds1 PF15456.6 gi|344210454|ref|YP_004794774.1| - 0.38 10.9 5.2 0.26 11.5 2.5 2.1 1 1 0 1 1 1 0 Up-regulated During Septation RNase_J_C PF17770.1 gi|344210454|ref|YP_004794774.1| - 0.52 11.4 2.6 21 6.3 0.3 3.0 3 1 0 3 3 3 0 Ribonuclease J C-terminal domain PilJ PF13675.6 gi|344210454|ref|YP_004794774.1| - 1.7 8.7 6.7 0.52 10.4 0.8 2.4 2 1 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF948 PF06103.11 gi|344210454|ref|YP_004794774.1| - 2.6 8.4 6.5 12 6.3 0.8 3.0 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Snapin_Pallidin PF14712.6 gi|344210454|ref|YP_004794774.1| - 4.4 7.8 7.4 3 8.3 0.8 3.0 2 2 1 3 3 3 0 Snapin/Pallidin REV1_C PF16727.5 gi|344210454|ref|YP_004794774.1| - 5.5 7.5 10.3 12 6.3 0.5 3.9 2 1 2 4 4 4 0 DNA repair protein REV1 C-terminal domain ZapB PF06005.12 gi|344210454|ref|YP_004794774.1| - 8.1 7.0 11.1 1.2 9.7 5.3 2.3 2 1 0 2 2 2 0 Cell division protein ZapB Abhydrolase_1 PF00561.20 gi|344210455|ref|YP_004794775.1| - 1.8e-18 67.1 0.0 4.8e-18 65.7 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold HHH_5 PF14520.6 gi|344210455|ref|YP_004794775.1| - 3.4e-11 43.6 0.0 6.7e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF3141 PF11339.8 gi|344210455|ref|YP_004794775.1| - 1.7e-08 33.4 0.0 2.8e-06 26.1 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) PhaC_N PF07167.13 gi|344210455|ref|YP_004794775.1| - 1.8e-08 34.2 0.0 3.4e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|344210455|ref|YP_004794775.1| - 3.7e-08 32.9 0.0 0.00079 18.8 0.0 2.5 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|344210455|ref|YP_004794775.1| - 3.5e-06 26.7 0.0 0.0023 17.5 0.0 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family PHB_depo_C PF06850.11 gi|344210455|ref|YP_004794775.1| - 2.1e-05 24.0 0.0 4.1e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF4332 PF14229.6 gi|344210455|ref|YP_004794775.1| - 0.00026 21.2 0.0 0.00082 19.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|344210455|ref|YP_004794775.1| - 0.0004 20.2 0.0 0.0015 18.3 0.0 2.0 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda FSH1 PF03959.13 gi|344210455|ref|YP_004794775.1| - 0.00073 19.3 0.0 0.066 12.9 0.0 2.2 2 0 0 2 2 2 1 Serine hydrolase (FSH1) Cdd1 PF11731.8 gi|344210455|ref|YP_004794775.1| - 0.00075 19.7 0.0 0.0022 18.2 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus TfoX_C PF04994.13 gi|344210455|ref|YP_004794775.1| - 0.065 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 TfoX C-terminal domain Abhydrolase_5 PF12695.7 gi|344210455|ref|YP_004794775.1| - 0.11 12.3 0.0 3.6 7.3 0.0 2.4 2 1 0 2 2 2 0 Alpha/beta hydrolase family LDcluster4 PF18306.1 gi|344210456|ref|YP_004794776.1| - 4.4e-36 123.8 5.1 4.6e-36 123.8 5.1 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|344210456|ref|YP_004794776.1| - 8.5e-08 32.4 0.8 1.1e-07 32.0 0.2 1.4 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|344210456|ref|YP_004794776.1| - 3.4e-05 23.2 2.0 0.00045 19.5 0.7 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.15 gi|344210456|ref|YP_004794776.1| - 0.0084 16.1 0.1 0.013 15.5 0.1 1.4 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Cpn60_TCP1 PF00118.24 gi|344210458|ref|YP_004794778.1| - 4.9e-175 582.8 18.0 5.6e-175 582.7 18.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.17 gi|344210458|ref|YP_004794778.1| - 0.045 14.1 0.4 0.32 11.4 0.0 2.5 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor CoA_binding_2 PF13380.6 gi|344210458|ref|YP_004794778.1| - 0.086 13.3 0.5 0.69 10.4 0.0 2.5 2 0 0 2 2 2 0 CoA binding domain SCAB_CC PF16712.5 gi|344210458|ref|YP_004794778.1| - 1.7 8.4 9.0 0.25 11.2 0.7 2.8 3 0 0 3 3 3 0 Coiled-coil regions of plant-specific actin-binding protein AAA_22 PF13401.6 gi|344210459|ref|YP_004794779.1| - 3.1e-08 34.0 0.0 1e-07 32.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|344210459|ref|YP_004794779.1| - 0.0023 18.4 0.0 0.072 13.5 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|344210459|ref|YP_004794779.1| - 0.0047 17.3 0.6 0.019 15.3 0.1 2.3 2 1 0 2 2 2 1 AAA ATPase domain NAD_binding_10 PF13460.6 gi|344210463|ref|YP_004794783.1| - 3.6e-19 69.4 0.2 6.5e-19 68.5 0.2 1.5 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|344210463|ref|YP_004794783.1| - 8.1e-16 58.3 0.0 1.2e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|344210463|ref|YP_004794783.1| - 2.2e-11 43.7 0.1 6.1e-11 42.2 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344210463|ref|YP_004794783.1| - 3.2e-05 23.5 0.0 4.5e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|344210463|ref|YP_004794783.1| - 6.1e-05 22.2 0.0 9.7e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|344210463|ref|YP_004794783.1| - 0.003 16.8 0.0 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein Glyco_trans_4_4 PF13579.6 gi|344210463|ref|YP_004794783.1| - 0.011 16.2 4.5 0.052 14.0 4.5 2.1 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain RmlD_sub_bind PF04321.17 gi|344210463|ref|YP_004794783.1| - 0.019 14.1 0.0 0.16 11.0 0.0 2.1 2 0 0 2 2 2 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|344210464|ref|YP_004794784.1| - 2e-66 224.7 0.0 2.4e-66 224.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|344210464|ref|YP_004794784.1| - 1.8e-64 217.5 0.0 2.2e-64 217.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344210464|ref|YP_004794784.1| - 2.9e-27 95.4 0.0 3.7e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|344210464|ref|YP_004794784.1| - 1e-18 67.5 0.1 1.3e-18 67.2 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|344210464|ref|YP_004794784.1| - 4.7e-18 65.3 0.0 2.7e-17 62.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|344210464|ref|YP_004794784.1| - 9.9e-12 45.1 0.0 6.2e-11 42.5 0.0 2.0 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|344210464|ref|YP_004794784.1| - 8.5e-10 38.2 0.0 2.3e-09 36.8 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|344210464|ref|YP_004794784.1| - 1.2e-07 31.6 0.0 1.6e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|344210464|ref|YP_004794784.1| - 3.4e-07 30.4 0.0 1.7e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|344210464|ref|YP_004794784.1| - 8.8e-05 22.0 1.1 0.0014 18.1 0.1 2.9 3 1 0 3 3 3 1 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|344210464|ref|YP_004794784.1| - 0.049 13.2 0.2 0.17 11.4 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|344210464|ref|YP_004794784.1| - 0.066 13.1 0.1 0.14 12.0 0.0 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPBP PF02517.16 gi|344210466|ref|YP_004794786.1| - 3.6e-14 52.9 1.5 3.6e-14 52.9 1.5 2.9 2 2 1 3 3 3 2 CPBP intramembrane metalloprotease HTH_20 PF12840.7 gi|344210467|ref|YP_004794787.1| - 4.2e-09 36.3 1.1 6.1e-09 35.8 1.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210467|ref|YP_004794787.1| - 2e-07 30.8 0.0 3.5e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344210467|ref|YP_004794787.1| - 1.7e-06 27.8 0.0 2.5e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344210467|ref|YP_004794787.1| - 0.00015 21.5 0.0 0.00024 20.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344210467|ref|YP_004794787.1| - 0.0002 20.9 0.0 0.00028 20.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344210467|ref|YP_004794787.1| - 0.00032 20.5 0.0 0.00045 20.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|344210467|ref|YP_004794787.1| - 0.00049 19.9 0.1 0.0011 18.8 0.1 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|344210467|ref|YP_004794787.1| - 0.00075 19.4 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|344210467|ref|YP_004794787.1| - 0.0011 18.9 0.0 0.0019 18.2 0.0 1.4 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_Tnp_ISL3 PF13542.6 gi|344210467|ref|YP_004794787.1| - 0.0012 18.2 0.0 0.0034 16.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.6 gi|344210467|ref|YP_004794787.1| - 0.0094 15.9 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|344210467|ref|YP_004794787.1| - 0.011 16.2 0.0 0.017 15.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|344210467|ref|YP_004794787.1| - 0.03 14.3 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain DprA_WH PF17782.1 gi|344210467|ref|YP_004794787.1| - 0.044 13.9 1.2 0.069 13.3 1.2 1.3 1 0 0 1 1 1 0 DprA winged helix domain HxlR PF01638.17 gi|344210467|ref|YP_004794787.1| - 0.085 12.7 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Dimerisation PF08100.11 gi|344210467|ref|YP_004794787.1| - 0.16 12.0 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain HTH_DeoR PF08220.12 gi|344210467|ref|YP_004794787.1| - 0.17 11.6 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain E1-E2_ATPase PF00122.20 gi|344210468|ref|YP_004794788.1| - 0.0059 16.1 1.6 0.0077 15.8 1.6 1.1 1 0 0 1 1 1 1 E1-E2 ATPase PetG PF02529.15 gi|344210469|ref|YP_004794789.1| - 0.039 13.8 4.2 0.18 11.7 0.0 2.5 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 DUF2892 PF11127.8 gi|344210469|ref|YP_004794789.1| - 0.36 10.9 16.9 0.064 13.3 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) CSD PF00313.22 gi|344210470|ref|YP_004794790.1| - 2.9e-19 68.7 0.3 3.2e-19 68.5 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|344210470|ref|YP_004794790.1| - 0.02 14.8 0.3 0.029 14.3 0.2 1.3 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|344210470|ref|YP_004794790.1| - 0.053 13.2 2.3 0.081 12.6 2.3 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Rho_RNA_bind PF07497.12 gi|344210470|ref|YP_004794790.1| - 0.067 13.1 0.0 0.079 12.8 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain Helicase_C_2 PF13307.6 gi|344210471|ref|YP_004794791.1| - 4.4e-22 79.1 0.0 8.8e-22 78.1 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|344210471|ref|YP_004794791.1| - 1.1e-05 25.1 0.0 1.9e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|344210471|ref|YP_004794791.1| - 1.8e-05 24.8 0.0 0.016 15.2 0.0 2.5 3 0 0 3 3 3 2 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|344210471|ref|YP_004794791.1| - 4.2e-05 23.4 1.2 0.014 15.1 0.0 2.5 3 0 0 3 3 3 2 AAA domain DEAD PF00270.29 gi|344210471|ref|YP_004794791.1| - 0.00013 21.8 0.0 0.074 12.8 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|344210471|ref|YP_004794791.1| - 0.00022 21.5 0.0 0.0021 18.3 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344210471|ref|YP_004794791.1| - 0.0028 18.1 0.2 0.0092 16.4 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_19 PF13245.6 gi|344210471|ref|YP_004794791.1| - 0.0075 16.6 0.0 0.017 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|344210471|ref|YP_004794791.1| - 0.028 14.9 0.0 0.6 10.6 0.0 2.9 4 0 0 4 4 4 0 ABC transporter PhoH PF02562.16 gi|344210471|ref|YP_004794791.1| - 0.059 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein DXP_redisom_C PF08436.12 gi|344210471|ref|YP_004794791.1| - 0.11 12.7 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AAA PF00004.29 gi|344210471|ref|YP_004794791.1| - 0.16 12.4 0.0 3.2 8.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Met_10 PF02475.16 gi|344210472|ref|YP_004794792.1| - 2.3e-49 167.8 0.0 9.8e-49 165.8 0.0 1.9 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|344210472|ref|YP_004794792.1| - 6.2e-06 26.8 0.0 2.2e-05 25.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|344210472|ref|YP_004794792.1| - 4.6e-05 23.1 0.0 8.7e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|344210472|ref|YP_004794792.1| - 4.7e-05 23.0 0.0 0.00019 21.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|344210472|ref|YP_004794792.1| - 0.00017 21.3 0.0 0.00032 20.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|344210472|ref|YP_004794792.1| - 0.0002 21.3 0.0 0.00055 19.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|344210472|ref|YP_004794792.1| - 0.00092 20.2 0.9 0.0051 17.8 0.1 2.5 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210472|ref|YP_004794792.1| - 0.018 15.7 0.0 0.047 14.3 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain SAM_MT PF04445.13 gi|344210472|ref|YP_004794792.1| - 0.043 13.2 0.1 0.068 12.6 0.1 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase DNA_methylase PF00145.17 gi|344210472|ref|YP_004794792.1| - 0.048 13.0 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase RrnaAD PF00398.20 gi|344210472|ref|YP_004794792.1| - 0.058 12.4 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.11 gi|344210472|ref|YP_004794792.1| - 0.1 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_31 PF13847.6 gi|344210472|ref|YP_004794792.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|344210472|ref|YP_004794792.1| - 0.15 11.4 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NMD3 PF04981.13 gi|344210473|ref|YP_004794793.1| - 1.2e-63 214.8 0.0 1.4e-63 214.6 0.0 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|344210473|ref|YP_004794793.1| - 0.0012 19.1 1.1 0.13 12.6 0.0 3.0 2 1 1 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-ribbon_3 PF13248.6 gi|344210473|ref|YP_004794793.1| - 0.058 12.8 4.6 10 5.7 0.1 3.6 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|344210473|ref|YP_004794793.1| - 0.072 13.1 5.9 2.7 8.1 3.4 3.1 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344210473|ref|YP_004794793.1| - 0.092 12.5 9.7 0.19 11.5 0.3 3.4 3 0 0 3 3 3 0 zinc-ribbon domain FYVE PF01363.21 gi|344210473|ref|YP_004794793.1| - 0.098 12.8 3.4 1.6 8.9 0.7 2.5 3 0 0 3 3 3 0 FYVE zinc finger eIF-5_eIF-2B PF01873.17 gi|344210473|ref|YP_004794793.1| - 0.26 11.1 2.5 0.31 10.9 0.5 2.0 2 0 0 2 2 2 0 Domain found in IF2B/IF5 GFA PF04828.14 gi|344210473|ref|YP_004794793.1| - 0.33 11.3 3.6 40 4.6 0.0 3.4 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|344210473|ref|YP_004794793.1| - 0.98 9.1 13.3 0.46 10.1 0.2 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|344210473|ref|YP_004794793.1| - 9.1 6.0 12.1 3 7.6 0.3 2.8 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|344210473|ref|YP_004794793.1| - 9.6 6.4 7.2 8.3 6.6 0.2 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Epimerase PF01370.21 gi|344210474|ref|YP_004794794.1| - 3.4e-27 95.5 0.3 5.3e-26 91.6 0.3 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344210474|ref|YP_004794794.1| - 2.4e-18 66.6 0.0 3.7e-16 59.4 0.0 2.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|344210474|ref|YP_004794794.1| - 5.8e-13 48.6 0.1 1.7e-12 47.0 0.0 1.7 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|344210474|ref|YP_004794794.1| - 4.2e-06 26.1 0.0 6.6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|344210474|ref|YP_004794794.1| - 6.2e-06 25.4 0.0 8.7e-06 24.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|344210474|ref|YP_004794794.1| - 0.00014 21.1 0.1 0.00041 19.6 0.1 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|344210474|ref|YP_004794794.1| - 0.022 14.2 0.0 0.44 10.0 0.0 2.5 2 1 0 2 2 2 0 short chain dehydrogenase DHQ_synthase PF01761.20 gi|344210474|ref|YP_004794794.1| - 0.036 13.2 0.2 0.052 12.7 0.2 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase CshA_NR2 PF18651.1 gi|344210474|ref|YP_004794794.1| - 0.067 12.4 0.0 0.099 11.8 0.0 1.2 1 0 0 1 1 1 0 Surface adhesin CshA non-repetitive domain 2 Peptidase_M48 PF01435.18 gi|344210475|ref|YP_004794795.1| - 3.2e-43 147.8 0.0 5e-43 147.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344210475|ref|YP_004794795.1| - 1.1e-07 31.4 0.5 2.1e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|344210475|ref|YP_004794795.1| - 0.051 13.4 0.0 0.074 12.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF1772 PF08592.11 gi|344210475|ref|YP_004794795.1| - 0.16 12.3 0.0 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) DUF2207 PF09972.9 gi|344210475|ref|YP_004794795.1| - 0.77 8.5 9.0 1.9 7.1 1.4 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) Pox_E6 PF04656.12 gi|344210476|ref|YP_004794796.1| - 0.082 11.4 0.1 0.1 11.1 0.1 1.1 1 0 0 1 1 1 0 Pox virus E6 protein Rad51 PF08423.11 gi|344210477|ref|YP_004794797.1| - 9.9e-75 251.1 0.4 9.4e-43 146.3 0.0 2.0 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.6 gi|344210477|ref|YP_004794797.1| - 1.4e-11 44.8 0.1 1.2e-10 41.9 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.21 gi|344210477|ref|YP_004794797.1| - 5.9e-08 32.5 0.1 0.0051 16.3 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|344210477|ref|YP_004794797.1| - 6.6e-06 25.8 0.2 9.9e-06 25.3 0.2 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|344210477|ref|YP_004794797.1| - 7.3e-06 25.6 1.6 0.0012 18.7 0.3 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|344210477|ref|YP_004794797.1| - 0.00022 21.3 0.0 0.00059 19.9 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|344210477|ref|YP_004794797.1| - 0.00083 19.5 0.0 0.0017 18.6 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus ATPase PF06745.13 gi|344210477|ref|YP_004794797.1| - 0.0042 16.5 0.1 0.0095 15.3 0.0 1.6 2 0 0 2 2 2 1 KaiC IMS_HHH PF11798.8 gi|344210477|ref|YP_004794797.1| - 0.008 16.4 0.0 0.03 14.6 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|344210477|ref|YP_004794797.1| - 0.021 14.6 0.0 0.09 12.6 0.0 2.1 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda AAA_22 PF13401.6 gi|344210477|ref|YP_004794797.1| - 0.027 14.8 0.1 0.07 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain HHH_3 PF12836.7 gi|344210477|ref|YP_004794797.1| - 0.036 14.3 0.0 3.3 8.0 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|344210477|ref|YP_004794797.1| - 0.051 14.0 0.1 0.42 11.0 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain BAF PF02961.14 gi|344210477|ref|YP_004794797.1| - 0.15 12.6 0.0 0.42 11.1 0.0 1.7 1 0 0 1 1 1 0 Barrier to autointegration factor Aldo_ket_red PF00248.21 gi|344210478|ref|YP_004794798.1| - 4.5e-48 163.9 0.0 5.2e-48 163.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.21 gi|344210478|ref|YP_004794798.1| - 0.22 11.5 3.4 0.4 10.7 0.1 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family CPBP PF02517.16 gi|344210479|ref|YP_004794799.1| - 1.1e-12 48.1 5.6 1.1e-12 48.1 5.6 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Hexapep PF00132.24 gi|344210480|ref|YP_004794800.1| - 2e-06 27.3 2.8 0.016 14.9 0.0 3.3 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344210480|ref|YP_004794800.1| - 0.00023 20.8 0.2 0.067 13.0 0.0 2.9 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Nmad3 PF18754.1 gi|344210481|ref|YP_004794801.1| - 4e-56 190.4 0.0 4.5e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 ATPase PF06745.13 gi|344210482|ref|YP_004794802.1| - 3.6e-34 118.1 0.2 4.1e-34 117.9 0.2 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|344210482|ref|YP_004794802.1| - 2.2e-06 26.6 0.0 1.9e-05 23.5 0.0 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein MEDS PF14417.6 gi|344210482|ref|YP_004794802.1| - 4.5e-05 23.4 0.0 0.00012 22.0 0.0 1.8 2 1 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_25 PF13481.6 gi|344210482|ref|YP_004794802.1| - 0.00024 20.7 0.0 0.00052 19.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|344210482|ref|YP_004794802.1| - 0.00092 19.0 0.0 0.0016 18.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|344210482|ref|YP_004794802.1| - 0.0015 18.4 0.3 0.0029 17.4 0.2 1.6 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.17 gi|344210482|ref|YP_004794802.1| - 0.0033 17.2 0.0 0.0042 16.8 0.0 1.4 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|344210482|ref|YP_004794802.1| - 0.0034 17.7 0.1 0.005 17.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344210482|ref|YP_004794802.1| - 0.0036 17.7 0.6 0.037 14.5 0.6 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|344210482|ref|YP_004794802.1| - 0.004 17.3 0.2 0.01 16.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|344210482|ref|YP_004794802.1| - 0.006 16.8 0.0 0.01 16.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344210482|ref|YP_004794802.1| - 0.0061 16.8 0.2 0.011 16.1 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|344210482|ref|YP_004794802.1| - 0.0077 16.3 0.0 0.022 14.8 0.0 1.9 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|344210482|ref|YP_004794802.1| - 0.017 15.0 0.0 0.029 14.3 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|344210482|ref|YP_004794802.1| - 0.022 15.3 0.3 0.035 14.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|344210482|ref|YP_004794802.1| - 0.027 14.9 0.1 0.072 13.5 0.0 1.8 2 0 0 2 2 2 0 RNA helicase DnaB_C PF03796.15 gi|344210482|ref|YP_004794802.1| - 0.036 13.4 0.0 0.14 11.5 0.0 1.9 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|344210482|ref|YP_004794802.1| - 0.039 14.3 0.0 0.075 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.15 gi|344210482|ref|YP_004794802.1| - 0.059 13.3 0.2 0.08 12.8 0.2 1.5 1 1 0 1 1 1 0 NTPase AAA_17 PF13207.6 gi|344210482|ref|YP_004794802.1| - 0.06 13.8 0.5 0.19 12.2 0.2 1.9 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|344210482|ref|YP_004794802.1| - 0.067 12.8 0.1 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|344210482|ref|YP_004794802.1| - 0.069 12.9 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|344210482|ref|YP_004794802.1| - 0.092 12.4 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|344210482|ref|YP_004794802.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|344210482|ref|YP_004794802.1| - 0.15 12.0 0.1 0.47 10.3 0.0 1.9 2 1 0 2 2 2 0 NACHT domain PHP PF02811.19 gi|344210485|ref|YP_004794805.1| - 9.2e-07 29.3 0.0 9.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|344210485|ref|YP_004794805.1| - 0.009 15.7 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 PHP-associated Cupin_2 PF07883.11 gi|344210487|ref|YP_004794807.1| - 6.6e-16 57.8 0.6 1e-15 57.2 0.6 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|344210487|ref|YP_004794807.1| - 2.1e-06 27.7 0.1 3.1e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.6 gi|344210487|ref|YP_004794807.1| - 0.0085 15.8 0.1 0.0087 15.8 0.1 1.3 1 0 0 1 1 1 1 AraC-binding-like domain Zn-ribbon_8 PF09723.10 gi|344210487|ref|YP_004794807.1| - 0.043 13.9 2.4 0.1 12.7 2.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF2072 PF09845.9 gi|344210487|ref|YP_004794807.1| - 0.069 13.4 0.1 0.11 12.8 0.1 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein Cupin_3 PF05899.12 gi|344210487|ref|YP_004794807.1| - 0.11 12.2 0.3 0.17 11.6 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|344210487|ref|YP_004794807.1| - 0.15 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Rubredoxin_2 PF18073.1 gi|344210487|ref|YP_004794807.1| - 1.2 8.9 3.8 15 5.4 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-NADH-PPase PF09297.11 gi|344210487|ref|YP_004794807.1| - 9.8 5.9 8.2 7.4 6.3 0.9 3.4 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain GATase PF00117.28 gi|344210488|ref|YP_004794808.1| - 1.3e-20 74.0 0.0 1.8e-20 73.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344210488|ref|YP_004794808.1| - 1.3e-06 28.3 0.1 1e-05 25.4 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 Tricorn_C1 PF14684.6 gi|344210489|ref|YP_004794809.1| - 0.028 14.5 0.0 0.031 14.4 0.0 1.1 1 0 0 1 1 1 0 Tricorn protease C1 domain SeqA_N PF17206.3 gi|344210489|ref|YP_004794809.1| - 0.031 13.6 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 SeqA protein N-terminal domain DNA_pol_B_palm PF14792.6 gi|344210489|ref|YP_004794809.1| - 0.076 13.2 0.0 0.082 13.1 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase beta palm DUF5336 PF17270.2 gi|344210490|ref|YP_004794810.1| - 0.037 13.6 0.9 0.039 13.6 0.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) Peptidase_U4 PF03419.13 gi|344210490|ref|YP_004794810.1| - 0.12 11.6 1.3 0.14 11.4 1.3 1.0 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Aldo_ket_red PF00248.21 gi|344210491|ref|YP_004794811.1| - 7.3e-56 189.5 0.0 1.5e-53 182.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.22 gi|344210492|ref|YP_004794812.1| - 8.4e-17 62.1 0.0 1.4e-16 61.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DUF5642 PF18702.1 gi|344210492|ref|YP_004794812.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5642) Coat_F PF07875.12 gi|344210493|ref|YP_004794813.1| - 0.04 14.1 1.8 1.1 9.5 0.2 3.0 3 0 0 3 3 3 0 Coat F domain zinc_ribbon_2 PF13240.6 gi|344210494|ref|YP_004794814.1| - 4.4e-05 23.1 2.0 5.9e-05 22.6 2.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|344210494|ref|YP_004794814.1| - 7.5e-05 22.7 3.1 0.0001 22.2 3.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|344210494|ref|YP_004794814.1| - 0.0026 18.5 0.6 0.0032 18.2 0.6 1.1 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|344210494|ref|YP_004794814.1| - 0.0059 16.0 1.6 0.0086 15.5 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|344210494|ref|YP_004794814.1| - 0.017 14.5 0.8 0.023 14.0 0.8 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others SoxD PF04267.12 gi|344210494|ref|YP_004794814.1| - 0.057 13.5 0.1 0.081 13.0 0.1 1.3 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family DNA_RNApol_7kD PF03604.13 gi|344210494|ref|YP_004794814.1| - 0.084 12.6 0.7 0.37 10.5 0.0 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|344210494|ref|YP_004794814.1| - 0.095 12.6 0.8 0.13 12.2 0.8 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2866 PF11065.8 gi|344210495|ref|YP_004794815.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2866) NucS PF01939.16 gi|344210496|ref|YP_004794816.1| - 1.4e-67 227.4 0.0 1.6e-67 227.2 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|344210496|ref|YP_004794816.1| - 0.025 14.4 0.0 0.043 13.6 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain HalOD1 PF18545.1 gi|344210497|ref|YP_004794817.1| - 3.9e-21 75.1 2.7 4.7e-21 74.8 2.7 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 BAT PF15915.5 gi|344210498|ref|YP_004794818.1| - 1.4e-28 99.7 1.7 2.1e-28 99.2 1.7 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|344210498|ref|YP_004794818.1| - 2.3e-22 78.5 0.1 3.4e-22 78.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.7 gi|344210498|ref|YP_004794818.1| - 0.00026 21.0 0.1 0.00063 19.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210498|ref|YP_004794818.1| - 0.0028 17.2 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|344210498|ref|YP_004794818.1| - 0.0051 16.3 0.0 0.044 13.3 0.0 2.3 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|344210498|ref|YP_004794818.1| - 0.0061 16.4 0.1 0.021 14.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344210498|ref|YP_004794818.1| - 0.015 15.2 0.0 0.027 14.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|344210498|ref|YP_004794818.1| - 0.042 13.8 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 gi|344210498|ref|YP_004794818.1| - 0.045 13.4 0.0 0.1 12.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|344210498|ref|YP_004794818.1| - 0.048 13.2 0.0 0.096 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|344210498|ref|YP_004794818.1| - 0.14 12.2 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain MutS_V PF00488.21 gi|344210499|ref|YP_004794819.1| - 3.1e-79 265.4 0.0 4.9e-79 264.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|344210499|ref|YP_004794819.1| - 3.6e-37 127.1 0.0 1.1e-36 125.5 0.0 1.8 2 0 0 2 2 2 1 MutS domain I MutS_III PF05192.18 gi|344210499|ref|YP_004794819.1| - 1.4e-34 120.1 3.0 2.2e-34 119.4 3.0 1.4 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|344210499|ref|YP_004794819.1| - 2.1e-31 108.1 0.3 3.9e-31 107.2 0.3 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|344210499|ref|YP_004794819.1| - 5e-12 46.3 0.0 1.7e-11 44.6 0.0 1.9 1 0 0 1 1 1 1 MutS domain II Cpn60_TCP1 PF00118.24 gi|344210501|ref|YP_004794821.1| - 1.5e-161 538.4 14.7 1.7e-161 538.2 14.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family OCD_Mu_crystall PF02423.15 gi|344210503|ref|YP_004794823.1| - 1.8e-90 303.1 2.3 2.1e-90 302.9 2.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|344210503|ref|YP_004794823.1| - 0.00082 19.5 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase zf-ribbon_3 PF13248.6 gi|344210505|ref|YP_004794825.1| - 0.00098 18.4 1.5 0.053 12.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|344210505|ref|YP_004794825.1| - 0.011 15.9 0.2 0.015 15.4 0.2 1.3 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Prok-RING_1 PF14446.6 gi|344210505|ref|YP_004794825.1| - 0.016 15.1 2.0 0.74 9.8 0.6 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|344210505|ref|YP_004794825.1| - 0.042 13.5 0.6 2 8.1 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-HYPF PF07503.12 gi|344210505|ref|YP_004794825.1| - 0.042 13.6 3.1 1 9.2 0.9 2.2 2 0 0 2 2 2 0 HypF finger Terminase_GpA PF05876.12 gi|344210505|ref|YP_004794825.1| - 0.15 10.5 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Zn_ribbon_recom PF13408.6 gi|344210505|ref|YP_004794825.1| - 0.2 12.2 0.9 5.8 7.5 0.5 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Lar_restr_allev PF14354.6 gi|344210505|ref|YP_004794825.1| - 0.2 12.0 2.5 4.1 7.8 2.5 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.19 gi|344210505|ref|YP_004794825.1| - 0.22 11.3 1.7 1.4 8.7 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|344210505|ref|YP_004794825.1| - 0.46 10.6 0.4 0.46 10.6 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.12 gi|344210505|ref|YP_004794825.1| - 2.6 8.1 5.3 1.5 8.8 0.7 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.6 gi|344210506|ref|YP_004794826.1| - 0.012 14.9 0.6 0.062 12.6 0.1 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger CpXC PF14353.6 gi|344210506|ref|YP_004794826.1| - 0.019 15.0 0.3 0.025 14.6 0.3 1.1 1 0 0 1 1 1 0 CpXC protein zf-ribbon_3 PF13248.6 gi|344210506|ref|YP_004794826.1| - 0.039 13.4 1.1 2.6 7.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|344210506|ref|YP_004794826.1| - 0.081 12.9 0.5 2.5 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Herpes_UL49_5 PF05702.11 gi|344210506|ref|YP_004794826.1| - 0.092 12.8 0.0 0.095 12.8 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein Terminase_GpA PF05876.12 gi|344210506|ref|YP_004794826.1| - 0.15 10.6 0.0 0.15 10.6 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) HATPase_c PF02518.26 gi|344210507|ref|YP_004794827.1| - 7e-09 36.2 0.0 9.5e-08 32.5 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|344210507|ref|YP_004794827.1| - 1.1e-07 32.1 0.4 3e-07 30.7 0.4 1.8 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|344210507|ref|YP_004794827.1| - 0.0045 17.0 1.1 0.0084 16.1 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain tRNA-synt_1 PF00133.22 gi|344210508|ref|YP_004794828.1| - 9.2e-72 242.2 5.5 1.1e-26 93.3 0.1 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|344210508|ref|YP_004794828.1| - 5.8e-59 198.7 0.0 1e-58 197.9 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|344210508|ref|YP_004794828.1| - 4.2e-35 121.2 0.0 1.7e-23 83.0 0.0 4.4 3 1 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|344210508|ref|YP_004794828.1| - 2.3e-15 56.9 0.0 4.4e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|344210508|ref|YP_004794828.1| - 0.00035 20.0 0.0 0.044 13.1 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|344210508|ref|YP_004794828.1| - 0.004 16.1 0.0 0.61 9.0 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (K) zf-ribbon_3 PF13248.6 gi|344210508|ref|YP_004794828.1| - 0.026 14.0 5.7 9.3 5.8 0.1 4.2 4 0 0 4 4 4 0 zinc-ribbon domain DZR PF12773.7 gi|344210508|ref|YP_004794828.1| - 0.056 13.5 5.8 1.3 9.1 0.9 3.1 2 1 1 3 3 3 0 Double zinc ribbon IBR PF01485.21 gi|344210508|ref|YP_004794828.1| - 0.25 11.6 4.4 0.38 11.0 0.7 2.4 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain DNA_ligase_ZBD PF03119.16 gi|344210508|ref|YP_004794828.1| - 0.72 9.9 0.0 0.72 9.9 0.0 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|344210508|ref|YP_004794828.1| - 2.8 7.5 8.9 15 5.2 0.6 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|344210508|ref|YP_004794828.1| - 5 7.4 6.0 1.3 9.2 0.2 2.7 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) AhpC-TSA PF00578.21 gi|344210509|ref|YP_004794829.1| - 1.4e-29 102.5 0.0 1.6e-29 102.3 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344210509|ref|YP_004794829.1| - 3.5e-18 65.7 0.0 3.8e-18 65.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|344210509|ref|YP_004794829.1| - 0.00058 20.0 0.0 0.00073 19.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|344210509|ref|YP_004794829.1| - 0.044 13.3 0.0 0.052 13.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) HSP20 PF00011.21 gi|344210510|ref|YP_004794830.1| - 3.1e-19 69.0 0.3 3.6e-19 68.8 0.3 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|344210510|ref|YP_004794830.1| - 1.6e-12 46.8 0.0 2.3e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|344210510|ref|YP_004794830.1| - 0.0017 18.5 0.8 0.0017 18.5 0.8 2.0 1 1 1 2 2 2 1 GvpH PDT PF00800.18 gi|344210511|ref|YP_004794831.1| - 2.6e-49 167.5 0.2 3.3e-49 167.2 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|344210511|ref|YP_004794831.1| - 5.9e-07 29.1 0.0 2.4e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 ACT domain DUF4234 PF14018.6 gi|344210512|ref|YP_004794832.1| - 5.3e-05 23.2 4.6 0.00013 22.0 4.6 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4234) Pyr_redox_2 PF07992.14 gi|344210514|ref|YP_004794834.1| - 7.3e-65 219.1 4.1 1.2e-64 218.4 4.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|344210514|ref|YP_004794834.1| - 2.6e-36 124.2 2.2 3.7e-36 123.7 0.4 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|344210514|ref|YP_004794834.1| - 3.5e-20 72.4 3.2 4.4e-17 62.4 0.3 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210514|ref|YP_004794834.1| - 6.1e-10 38.8 0.3 7.6e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344210514|ref|YP_004794834.1| - 1.1e-09 37.9 5.3 5.6e-08 32.3 0.5 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|344210514|ref|YP_004794834.1| - 8.8e-06 25.3 0.7 8.8e-06 25.3 0.7 2.3 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|344210514|ref|YP_004794834.1| - 3.8e-05 23.0 7.8 0.00033 19.9 0.5 3.4 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344210514|ref|YP_004794834.1| - 0.00023 21.3 4.5 0.045 14.0 0.7 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|344210514|ref|YP_004794834.1| - 0.00058 19.5 1.7 0.00082 19.0 0.1 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|344210514|ref|YP_004794834.1| - 0.0012 18.2 10.3 0.066 12.5 1.0 3.1 2 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|344210514|ref|YP_004794834.1| - 0.0015 17.3 6.3 0.048 12.4 0.2 3.3 3 1 1 4 4 4 1 HI0933-like protein 3HCDH_N PF02737.18 gi|344210514|ref|YP_004794834.1| - 0.0033 17.3 1.4 0.0061 16.5 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|344210514|ref|YP_004794834.1| - 0.0045 17.4 0.3 0.2 12.1 0.0 2.7 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|344210514|ref|YP_004794834.1| - 0.0052 16.1 4.6 0.21 10.8 0.1 2.9 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|344210514|ref|YP_004794834.1| - 0.012 16.1 1.9 0.29 11.6 0.7 3.0 2 1 0 2 2 2 0 XdhC Rossmann domain TetR_C_20 PF17925.1 gi|344210514|ref|YP_004794834.1| - 0.015 15.6 3.9 0.92 9.9 0.1 2.6 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain NADH_oxidored PF08040.11 gi|344210515|ref|YP_004794835.1| - 0.016 14.9 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 MNLL subunit NCE101 PF11654.8 gi|344210515|ref|YP_004794835.1| - 0.093 12.5 0.1 0.093 12.5 0.1 1.8 2 0 0 2 2 2 0 Non-classical export protein 1 BatA PF07584.11 gi|344210515|ref|YP_004794835.1| - 0.3 11.5 2.6 2 8.8 2.6 2.2 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal MatC_N PF07158.11 gi|344210515|ref|YP_004794835.1| - 0.7 9.9 5.7 0.77 9.8 0.4 2.0 1 1 1 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus 2-oxoacid_dh PF00198.23 gi|344210516|ref|YP_004794836.1| - 2.4e-82 275.9 0.0 3.4e-82 275.4 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|344210516|ref|YP_004794836.1| - 2e-24 85.2 1.0 4.6e-24 84.0 1.0 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|344210516|ref|YP_004794836.1| - 1.9e-23 82.5 2.0 7.2e-18 64.6 0.7 2.9 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|344210516|ref|YP_004794836.1| - 3.2e-09 36.5 0.7 8e-05 22.4 0.5 3.2 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|344210516|ref|YP_004794836.1| - 8.1e-06 26.5 2.6 0.00098 19.8 0.3 2.9 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_D23 PF16576.5 gi|344210516|ref|YP_004794836.1| - 0.00013 21.2 0.7 0.00072 18.8 0.8 2.0 1 1 1 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|344210516|ref|YP_004794836.1| - 0.00054 19.8 0.4 0.0012 18.8 0.4 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein PYNP_C PF07831.13 gi|344210516|ref|YP_004794836.1| - 0.018 14.6 0.2 1.3 8.8 0.0 2.7 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain RnfC_N PF13375.6 gi|344210516|ref|YP_004794836.1| - 0.025 14.5 0.5 0.067 13.2 0.5 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|344210516|ref|YP_004794836.1| - 0.036 13.5 0.1 0.082 12.3 0.1 1.5 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CAT PF00302.18 gi|344210516|ref|YP_004794836.1| - 0.11 12.4 0.0 0.35 10.8 0.0 1.7 2 0 0 2 2 2 0 Chloramphenicol acetyltransferase Transket_pyr PF02779.24 gi|344210517|ref|YP_004794837.1| - 6.8e-50 169.2 0.0 9.4e-50 168.7 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|344210517|ref|YP_004794837.1| - 9.5e-39 132.1 0.0 1.6e-38 131.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|344210517|ref|YP_004794837.1| - 0.0015 18.8 0.0 0.0038 17.5 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|344210518|ref|YP_004794838.1| - 4.5e-85 285.2 0.0 5.4e-85 284.9 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|344210518|ref|YP_004794838.1| - 1.5e-05 24.3 0.0 2.1e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.21 gi|344210518|ref|YP_004794838.1| - 0.002 17.1 0.0 0.0036 16.3 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|344210518|ref|YP_004794838.1| - 0.02 14.6 0.0 0.054 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|344210519|ref|YP_004794839.1| - 3.3e-11 43.9 0.0 1.5e-10 41.7 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|344210519|ref|YP_004794839.1| - 4.2e-06 27.1 0.1 8.3e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|344210519|ref|YP_004794839.1| - 0.042 13.9 0.1 5.4 7.1 0.0 2.8 2 1 1 3 3 3 0 B12 binding domain Methyltransf_25 PF13649.6 gi|344210520|ref|YP_004794840.1| - 4e-19 69.1 0.5 9.9e-18 64.6 0.1 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210520|ref|YP_004794840.1| - 1.3e-15 57.8 0.2 9.8e-15 55.0 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210520|ref|YP_004794840.1| - 3.6e-09 36.7 0.0 1.2e-08 35.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210520|ref|YP_004794840.1| - 1.9e-08 34.9 0.0 5.9e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210520|ref|YP_004794840.1| - 1.8e-07 31.1 0.0 3e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210520|ref|YP_004794840.1| - 6.1e-06 25.7 0.0 1.3e-05 24.6 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|344210520|ref|YP_004794840.1| - 6.1e-05 22.5 0.0 8.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|344210520|ref|YP_004794840.1| - 0.00015 21.2 0.0 0.0002 20.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|344210520|ref|YP_004794840.1| - 0.0015 18.1 0.0 0.0033 17.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|344210520|ref|YP_004794840.1| - 0.017 15.0 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Crust_neuro_H PF03858.13 gi|344210520|ref|YP_004794840.1| - 0.049 14.4 0.1 2.2 9.2 0.0 2.7 2 0 0 2 2 2 0 Crustacean neurohormone H DUF938 PF06080.12 gi|344210520|ref|YP_004794840.1| - 0.099 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.19 gi|344210520|ref|YP_004794840.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|344210520|ref|YP_004794840.1| - 0.15 11.7 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DEAD PF00270.29 gi|344210521|ref|YP_004794841.1| - 2.5e-24 86.0 0.0 5.3e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|344210521|ref|YP_004794841.1| - 2.1e-14 53.3 0.0 4.1e-14 52.4 0.0 1.4 1 1 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|344210521|ref|YP_004794841.1| - 9.3e-12 45.3 0.0 1.5e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|344210521|ref|YP_004794841.1| - 2.1e-07 31.3 0.0 1.5e-06 28.5 0.0 2.4 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|344210521|ref|YP_004794841.1| - 0.0035 17.9 0.8 0.013 16.0 0.8 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain T2SSE PF00437.20 gi|344210521|ref|YP_004794841.1| - 0.1 11.6 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DNA_pol_lambd_f PF10391.9 gi|344210521|ref|YP_004794841.1| - 0.11 12.4 0.1 0.29 11.0 0.1 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HemN_C PF06969.16 gi|344210521|ref|YP_004794841.1| - 0.13 12.4 0.0 0.34 11.0 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain HAD_2 PF13419.6 gi|344210523|ref|YP_004794843.1| - 3.1e-24 86.0 0.0 3.7e-24 85.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344210523|ref|YP_004794843.1| - 6.4e-17 62.5 0.1 3.6e-15 56.8 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344210523|ref|YP_004794843.1| - 7.9e-08 32.3 0.2 5.4e-07 29.6 0.3 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|344210523|ref|YP_004794843.1| - 0.004 17.2 0.0 0.048 13.8 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|344210523|ref|YP_004794843.1| - 0.0058 16.4 0.0 0.011 15.5 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase zf-C4_Topoisom PF01396.19 gi|344210524|ref|YP_004794844.1| - 6.2e-08 32.3 7.0 2.4e-05 24.0 0.2 3.5 3 0 0 3 3 3 2 Topoisomerase DNA binding C4 zinc finger NucS PF01939.16 gi|344210524|ref|YP_004794844.1| - 2.1e-07 30.6 0.0 2.8e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS zinc-ribbons_6 PF07191.12 gi|344210524|ref|YP_004794844.1| - 0.0003 20.7 1.9 0.044 13.8 0.5 2.5 1 1 1 2 2 2 2 zinc-ribbons Auto_anti-p27 PF06677.12 gi|344210524|ref|YP_004794844.1| - 0.0046 17.1 18.3 0.63 10.2 2.5 4.5 4 0 0 4 4 4 2 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.6 gi|344210524|ref|YP_004794844.1| - 0.0058 15.9 10.9 0.17 11.3 0.1 3.9 3 1 2 5 5 5 2 Transcription factor zinc-finger HypA PF01155.19 gi|344210524|ref|YP_004794844.1| - 0.038 14.0 3.3 0.35 10.9 1.2 2.8 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_Rg PF17915.1 gi|344210524|ref|YP_004794844.1| - 0.22 10.9 0.1 0.22 10.9 0.1 3.1 3 0 0 3 3 3 0 Reverse gyrase zinc finger zinc_ribbon_4 PF13717.6 gi|344210524|ref|YP_004794844.1| - 0.32 11.0 0.2 0.32 11.0 0.2 4.1 5 0 0 5 5 5 0 zinc-ribbon domain DUF1272 PF06906.11 gi|344210524|ref|YP_004794844.1| - 0.39 10.8 7.7 3.1 8.0 0.1 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1272) DUF35_N PF12172.8 gi|344210524|ref|YP_004794844.1| - 2.8 7.9 12.7 8.9 6.3 0.5 5.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DnaJ_CXXCXGXG PF00684.19 gi|344210524|ref|YP_004794844.1| - 3.8 7.9 8.3 4.3 7.8 1.1 2.6 1 1 2 3 3 3 0 DnaJ central domain Anti-TRAP PF15777.5 gi|344210524|ref|YP_004794844.1| - 7.5 6.6 9.2 16 5.5 0.0 3.6 2 1 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein OrfB_Zn_ribbon PF07282.11 gi|344210524|ref|YP_004794844.1| - 8.3 6.4 7.1 32 4.6 1.0 3.1 2 1 1 3 3 3 0 Putative transposase DNA-binding domain tRNA_int_endo PF01974.17 gi|344210525|ref|YP_004794845.1| - 5e-32 109.8 0.4 6.1e-24 83.9 0.0 3.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|344210525|ref|YP_004794845.1| - 1.5e-27 95.1 0.1 4.7e-13 48.6 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.25 gi|344210526|ref|YP_004794846.1| - 2.2e-43 148.7 0.0 1.1e-25 90.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.20 gi|344210527|ref|YP_004794847.1| - 4.8e-77 258.8 0.0 5.9e-77 258.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|344210527|ref|YP_004794847.1| - 0.00032 19.9 0.4 0.15 11.1 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|344210527|ref|YP_004794847.1| - 0.066 13.1 3.2 0.16 11.9 0.5 2.7 3 0 0 3 3 3 0 MarR family tRNA_synthFbeta PF17759.1 gi|344210527|ref|YP_004794847.1| - 0.086 12.3 0.0 7.5 5.9 0.0 2.3 2 0 0 2 2 2 0 Phenylalanyl tRNA synthetase beta chain CLM domain MarR PF01047.22 gi|344210527|ref|YP_004794847.1| - 0.17 11.9 0.1 4.9 7.1 0.0 2.9 3 0 0 3 3 3 0 MarR family tRNA_synthFbeta PF17759.1 gi|344210528|ref|YP_004794848.1| - 8.7e-39 133.2 0.0 1.4e-38 132.5 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|344210528|ref|YP_004794848.1| - 8.7e-14 51.6 0.2 7.4e-13 48.6 0.3 2.4 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|344210528|ref|YP_004794848.1| - 1.1e-11 44.7 0.0 1.8e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|344210528|ref|YP_004794848.1| - 5.9e-06 26.4 0.2 0.00046 20.4 0.0 2.8 2 0 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|344210528|ref|YP_004794848.1| - 0.00064 19.3 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) RDD PF06271.12 gi|344210529|ref|YP_004794849.1| - 1e-13 51.7 1.7 1.2e-13 51.4 1.7 1.1 1 0 0 1 1 1 1 RDD family DHO_dh PF01180.21 gi|344210530|ref|YP_004794850.1| - 1.3e-80 270.7 0.0 1.6e-80 270.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|344210530|ref|YP_004794850.1| - 0.0001 21.8 0.2 0.00018 21.1 0.2 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PucR PF07905.11 gi|344210530|ref|YP_004794850.1| - 0.07 13.4 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family HGD-D PF06050.13 gi|344210530|ref|YP_004794850.1| - 0.07 12.9 0.0 0.15 11.8 0.0 1.5 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component His_biosynth PF00977.21 gi|344210530|ref|YP_004794850.1| - 0.1 12.0 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein MazE_antitoxin PF04014.18 gi|344210531|ref|YP_004794851.1| - 0.014 15.4 0.2 0.02 14.8 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|344210531|ref|YP_004794851.1| - 0.026 14.6 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system MC1 PF05854.11 gi|344210532|ref|YP_004794852.1| - 1.1e-45 153.8 0.2 1.3e-45 153.6 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF5305 PF17231.2 gi|344210533|ref|YP_004794853.1| - 2.3e-36 125.3 0.0 4.3e-36 124.4 0.0 1.5 1 0 0 1 1 1 1 Family of unknown function (DUF5305) CopD PF05425.13 gi|344210534|ref|YP_004794854.1| - 0.036 14.5 0.6 0.036 14.5 0.6 2.7 2 1 1 3 3 3 0 Copper resistance protein D FA_desaturase PF00487.24 gi|344210537|ref|YP_004794857.1| - 0.068 13.0 0.2 0.072 12.9 0.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Laminin_G_3 PF13385.6 gi|344210538|ref|YP_004794858.1| - 1.6e-22 80.3 1.8 3e-22 79.4 1.8 1.5 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily MIB_HERC2 PF06701.13 gi|344210538|ref|YP_004794858.1| - 0.75 10.1 3.9 6.1 7.2 1.6 2.6 1 1 1 2 2 2 0 Mib_herc2 Peptidase_S24 PF00717.23 gi|344210539|ref|YP_004794859.1| - 2.2e-08 34.0 0.0 5.2e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like GCV_T_C PF08669.11 gi|344210539|ref|YP_004794859.1| - 0.0097 15.8 0.2 0.058 13.3 0.1 2.4 1 1 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain FtsX PF02687.21 gi|344210539|ref|YP_004794859.1| - 0.62 10.6 5.5 3.3 8.2 0.5 2.7 2 1 0 2 2 2 0 FtsX-like permease family HTH_AraC PF00165.23 gi|344210542|ref|YP_004794862.1| - 0.061 13.5 0.0 0.092 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4809 PF16067.5 gi|344210544|ref|YP_004794864.1| - 0.062 13.5 0.1 0.13 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4809) DUF5338 PF17273.2 gi|344210547|ref|YP_004794867.1| - 0.18 11.9 0.1 0.25 11.4 0.0 1.3 2 0 0 2 2 2 0 Family of unknown function (DUF5338) RNA_pol_Rpo13 PF12136.8 gi|344210547|ref|YP_004794867.1| - 1.4 8.9 5.1 2.5 8.1 0.2 2.2 2 1 0 2 2 2 0 RNA polymerase Rpo13 subunit HTH domain NIR_SIR PF01077.22 gi|344210549|ref|YP_004794869.1| - 2.4e-46 157.1 0.0 2.2e-35 121.5 0.0 2.7 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|344210549|ref|YP_004794869.1| - 3.1e-38 129.4 0.0 4.3e-19 68.1 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain UvrB_inter PF17757.1 gi|344210551|ref|YP_004794871.1| - 1.6e-31 108.3 0.0 5.5e-31 106.6 0.0 2.0 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|344210551|ref|YP_004794871.1| - 9.6e-19 67.0 1.1 9.6e-19 67.0 1.1 1.7 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|344210551|ref|YP_004794871.1| - 1.2e-17 64.2 0.0 4.5e-17 62.4 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|344210551|ref|YP_004794871.1| - 1.3e-10 40.6 10.5 6.7e-10 38.4 10.5 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.15 gi|344210551|ref|YP_004794871.1| - 7.2e-07 29.4 0.0 6.6e-06 26.2 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|344210551|ref|YP_004794871.1| - 0.0014 18.4 0.3 0.23 11.2 0.0 2.9 2 1 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|344210551|ref|YP_004794871.1| - 0.0029 17.9 0.2 3.1 8.1 0.1 2.8 3 0 0 3 3 3 2 AAA domain DEAD PF00270.29 gi|344210551|ref|YP_004794871.1| - 0.0031 17.3 1.0 0.041 13.7 0.0 3.2 3 1 1 4 4 4 1 DEAD/DEAH box helicase UB2H PF14814.6 gi|344210551|ref|YP_004794871.1| - 0.016 15.2 0.0 0.058 13.4 0.0 2.0 2 0 0 2 2 1 0 Bifunctional transglycosylase second domain AAA_22 PF13401.6 gi|344210551|ref|YP_004794871.1| - 0.017 15.4 0.3 5.8 7.2 0.0 2.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|344210551|ref|YP_004794871.1| - 0.025 15.0 0.7 1.6 9.1 0.0 3.6 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|344210551|ref|YP_004794871.1| - 0.07 13.2 0.0 0.07 13.2 0.0 2.7 4 0 0 4 4 4 0 Helicase HerA, central domain Cofilin_ADF PF00241.20 gi|344210551|ref|YP_004794871.1| - 0.12 12.1 0.1 0.34 10.7 0.1 1.7 1 0 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein NACHT PF05729.12 gi|344210551|ref|YP_004794871.1| - 0.14 12.0 0.0 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 NACHT domain Met_synt_B12 PF02965.17 gi|344210551|ref|YP_004794871.1| - 0.19 11.1 1.2 0.4 10.1 0.1 2.0 2 0 0 2 2 2 0 Vitamin B12 dependent methionine synthase, activation domain DELLA PF12041.8 gi|344210551|ref|YP_004794871.1| - 0.66 9.9 2.5 0.57 10.1 0.4 2.0 2 0 0 2 2 1 0 Transcriptional regulator DELLA protein N terminal CdvA PF18822.1 gi|344210551|ref|YP_004794871.1| - 1 9.2 4.4 8.7 6.2 0.4 2.7 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Methyltransf_25 PF13649.6 gi|344210552|ref|YP_004794872.1| - 0.00086 20.0 0.1 0.0014 19.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344210552|ref|YP_004794872.1| - 0.0036 16.9 0.3 0.007 15.9 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|344210552|ref|YP_004794872.1| - 0.0073 16.9 0.1 0.018 15.7 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain GATase_3 PF07685.14 gi|344210552|ref|YP_004794872.1| - 0.017 14.7 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PCMT PF01135.19 gi|344210552|ref|YP_004794872.1| - 0.021 14.6 0.0 0.038 13.8 0.0 1.3 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|344210552|ref|YP_004794872.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TP_methylase PF00590.20 gi|344210553|ref|YP_004794873.1| - 1.2e-38 133.2 0.5 1.8e-38 132.7 0.5 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|344210554|ref|YP_004794874.1| - 2.2e-40 138.9 0.6 2.7e-40 138.6 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|344210554|ref|YP_004794874.1| - 0.00099 19.5 0.0 0.0015 18.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily RraB PF06877.11 gi|344210554|ref|YP_004794874.1| - 0.065 14.0 0.0 0.26 12.1 0.0 1.9 2 0 0 2 2 2 0 Regulator of ribonuclease activity B CbiG_N PF11760.8 gi|344210555|ref|YP_004794875.1| - 8e-27 93.1 0.0 1.9e-26 91.9 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|344210555|ref|YP_004794875.1| - 2.5e-24 86.1 0.6 1.2e-23 83.9 0.1 2.1 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|344210555|ref|YP_004794875.1| - 0.0004 21.0 1.7 0.0065 17.1 1.1 2.6 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain adh_short_C2 PF13561.6 gi|344210556|ref|YP_004794876.1| - 6.5e-63 212.4 0.2 7.8e-63 212.2 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344210556|ref|YP_004794876.1| - 1.7e-53 181.0 0.1 2.1e-53 180.7 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344210556|ref|YP_004794876.1| - 1.6e-12 47.7 0.0 2.1e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344210556|ref|YP_004794876.1| - 9.6e-08 31.8 0.1 1.5e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344210556|ref|YP_004794876.1| - 6.4e-06 25.4 0.5 9.9e-06 24.8 0.3 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|344210556|ref|YP_004794876.1| - 0.034 14.0 0.3 0.053 13.4 0.3 1.7 1 1 0 1 1 1 0 NAD(P)H-binding TP_methylase PF00590.20 gi|344210557|ref|YP_004794877.1| - 4.4e-43 147.7 0.1 5.4e-43 147.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|344210558|ref|YP_004794878.1| - 2.5e-39 135.4 0.6 3.1e-39 135.1 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Macoilin PF09726.9 gi|344210558|ref|YP_004794878.1| - 0.041 12.4 5.5 0.048 12.2 5.5 1.1 1 0 0 1 1 1 0 Macoilin family ParB_C PF18064.1 gi|344210558|ref|YP_004794878.1| - 0.31 11.2 0.9 1.7 8.9 0.1 2.3 2 0 0 2 2 2 0 Centromere-binding protein ParB C-terminal Apt1 PF10351.9 gi|344210558|ref|YP_004794878.1| - 0.71 8.7 6.2 0.75 8.6 6.2 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Fer4_15 PF13459.6 gi|344210559|ref|YP_004794879.1| - 1.1e-19 70.9 8.9 1.7e-19 70.3 8.9 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|344210559|ref|YP_004794879.1| - 6.9e-06 26.5 3.7 1.2e-05 25.7 3.7 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I LAGLIDADG_3 PF14528.6 gi|344210560|ref|YP_004794880.1| - 0.016 15.5 0.0 0.039 14.3 0.0 1.6 2 0 0 2 2 2 0 LAGLIDADG-like domain Rhabdo_NV PF02484.15 gi|344210560|ref|YP_004794880.1| - 0.035 14.3 0.0 0.062 13.5 0.0 1.3 1 0 0 1 1 1 0 Rhabdovirus Non-virion protein CbiX PF01903.17 gi|344210561|ref|YP_004794881.1| - 2.4e-42 143.6 0.0 9.3e-21 74.2 0.2 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|344210561|ref|YP_004794881.1| - 1.2e-07 31.6 0.1 2.1e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|344210561|ref|YP_004794881.1| - 6.2e-05 22.5 0.0 0.033 13.5 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|344210561|ref|YP_004794881.1| - 0.01 15.7 0.0 0.016 15.0 0.0 1.5 1 0 0 1 1 1 0 Sucrase/ferredoxin-like DUF1636 PF07845.11 gi|344210561|ref|YP_004794881.1| - 0.036 14.5 1.0 1.9 9.0 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) DUF3209 PF11483.8 gi|344210562|ref|YP_004794882.1| - 1.2e-55 187.3 3.3 1.3e-55 187.1 3.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) T3SS_needle_E PF08988.10 gi|344210562|ref|YP_004794882.1| - 0.0071 16.5 0.2 0.016 15.4 0.2 1.6 1 0 0 1 1 1 1 Type III secretion system, cytoplasmic E component of needle DUF2278 PF10042.9 gi|344210562|ref|YP_004794882.1| - 0.077 13.0 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2278) PQQ_2 PF13360.6 gi|344210563|ref|YP_004794883.1| - 8.7e-10 38.6 7.7 5.7e-05 22.8 1.9 2.7 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|344210563|ref|YP_004794883.1| - 4.1e-08 33.5 35.8 0.014 15.9 0.2 8.8 7 2 0 7 7 7 4 PQQ-like domain PQQ PF01011.21 gi|344210563|ref|YP_004794883.1| - 0.00051 19.8 16.0 1.9 8.6 0.0 7.6 7 1 1 8 8 8 3 PQQ enzyme repeat DUF3552 PF12072.8 gi|344210564|ref|YP_004794884.1| - 3e-12 46.4 26.4 1.7e-08 34.1 13.2 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) DUF4200 PF13863.6 gi|344210564|ref|YP_004794884.1| - 0.0025 18.2 20.2 0.077 13.4 10.7 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) V_ATPase_I PF01496.19 gi|344210564|ref|YP_004794884.1| - 0.0049 14.9 0.3 0.0051 14.8 0.3 1.0 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Spc7 PF08317.11 gi|344210564|ref|YP_004794884.1| - 0.028 13.3 16.4 0.035 13.0 16.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Exonuc_VII_L PF02601.15 gi|344210564|ref|YP_004794884.1| - 0.033 13.8 7.8 0.043 13.4 7.8 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit TPR_MLP1_2 PF07926.12 gi|344210564|ref|YP_004794884.1| - 0.041 14.0 19.6 0.11 12.6 8.5 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Atg14 PF10186.9 gi|344210564|ref|YP_004794884.1| - 0.4 9.7 12.1 0.83 8.7 12.1 1.5 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|344210564|ref|YP_004794884.1| - 0.48 10.5 15.4 0.7 10.0 15.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|344210564|ref|YP_004794884.1| - 1.2 9.6 19.7 2.7 8.4 6.4 2.1 1 1 1 2 2 2 0 Fez1 Phage_holin_3_6 PF07332.11 gi|344210564|ref|YP_004794884.1| - 1.3 9.1 9.0 2 8.5 9.0 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF812 PF05667.11 gi|344210564|ref|YP_004794884.1| - 1.4 7.7 14.7 1.8 7.3 14.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Fumarate_red_D PF02313.17 gi|344210564|ref|YP_004794884.1| - 1.5 9.0 6.9 0.21 11.7 3.0 1.6 1 1 1 2 2 2 0 Fumarate reductase subunit D DUF390 PF04094.14 gi|344210564|ref|YP_004794884.1| - 1.9 6.7 18.8 2.2 6.5 18.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF390) OmpH PF03938.14 gi|344210564|ref|YP_004794884.1| - 1.9 8.8 18.6 3.9e+02 1.3 18.6 2.2 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) UPF0564 PF10595.9 gi|344210564|ref|YP_004794884.1| - 2.2 7.3 13.7 2.8 6.9 13.7 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0564 Jnk-SapK_ap_N PF09744.9 gi|344210564|ref|YP_004794884.1| - 4.4 7.5 21.9 4.2 7.6 20.9 1.4 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 UPF0449 PF15136.6 gi|344210564|ref|YP_004794884.1| - 7.8 7.0 15.2 0.52 10.8 3.3 2.4 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 CbtA PF09490.10 gi|344210565|ref|YP_004794885.1| - 1.2e-34 120.2 31.9 1.6e-34 119.8 31.9 1.2 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF4064 PF13273.6 gi|344210565|ref|YP_004794885.1| - 0.054 13.8 2.8 2.2 8.6 2.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) YqhR PF11085.8 gi|344210565|ref|YP_004794885.1| - 0.2 11.6 0.1 0.2 11.6 0.1 2.3 3 1 0 3 3 3 0 Conserved membrane protein YqhR CbtB PF09489.10 gi|344210566|ref|YP_004794886.1| - 2.4e-13 50.0 1.9 2.4e-13 50.0 1.9 1.4 2 0 0 2 2 2 1 Probable cobalt transporter subunit (CbtB) AAA_lid_2 PF17863.1 gi|344210567|ref|YP_004794887.1| - 7.7e-21 73.7 2.3 7.7e-21 73.7 2.3 2.1 2 0 0 2 2 2 1 AAA lid domain VWA_2 PF13519.6 gi|344210567|ref|YP_004794887.1| - 4.2e-14 53.1 0.0 1e-13 51.9 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|344210567|ref|YP_004794887.1| - 2.2e-11 43.5 0.0 6.2e-09 35.5 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|344210567|ref|YP_004794887.1| - 1.3e-09 38.2 0.0 8.6e-06 25.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|344210567|ref|YP_004794887.1| - 3.1e-09 37.3 0.0 5.4e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.23 gi|344210567|ref|YP_004794887.1| - 3.3e-05 23.1 0.0 0.00018 20.7 0.0 2.1 2 0 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|344210567|ref|YP_004794887.1| - 0.0034 17.1 0.0 0.09 12.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|344210567|ref|YP_004794887.1| - 0.0056 17.1 4.1 0.026 14.9 2.1 3.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|344210567|ref|YP_004794887.1| - 0.16 11.8 0.0 2.9 7.8 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|344210567|ref|YP_004794887.1| - 0.17 12.1 0.0 1.3 9.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain CobN-Mg_chel PF02514.16 gi|344210568|ref|YP_004794888.1| - 0 1263.0 0.0 0 1262.7 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|344210568|ref|YP_004794888.1| - 0.018 14.8 0.0 0.051 13.4 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CbiC PF02570.15 gi|344210569|ref|YP_004794889.1| - 4.9e-53 179.7 0.6 5.7e-53 179.5 0.6 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.20 gi|344210570|ref|YP_004794890.1| - 3e-31 109.0 0.5 3.5e-31 108.8 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2062 PF09835.9 gi|344210571|ref|YP_004794891.1| - 9.8e-21 74.2 2.6 1.1e-20 74.0 2.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) DUF2755 PF10954.8 gi|344210571|ref|YP_004794891.1| - 0.004 17.1 1.7 0.51 10.3 0.0 2.5 2 1 1 3 3 3 2 Protein of unknown function (DUF2755) FeoB_associated PF12669.7 gi|344210571|ref|YP_004794891.1| - 0.27 11.7 1.6 0.84 10.1 0.1 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein Phage_holin_3_6 PF07332.11 gi|344210571|ref|YP_004794891.1| - 0.34 11.0 12.5 4.5 7.4 12.5 2.3 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF202 PF02656.15 gi|344210571|ref|YP_004794891.1| - 1.5 9.3 5.8 5.2 7.6 4.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) TM_helix PF05552.12 gi|344210571|ref|YP_004794891.1| - 3.3 7.8 10.3 0.59 10.1 3.9 2.4 2 0 0 2 2 2 0 Conserved TM helix CbiX PF01903.17 gi|344210572|ref|YP_004794892.1| - 6.2e-20 71.5 0.2 2.5e-10 40.6 0.0 2.2 2 0 0 2 2 2 2 CbiX SSXRD PF09514.10 gi|344210572|ref|YP_004794892.1| - 0.11 12.1 1.0 5.2 6.7 0.1 2.3 2 0 0 2 2 2 0 SSXRD motif TrkA_C PF02080.21 gi|344210573|ref|YP_004794893.1| - 3e-16 59.0 0.1 9.1e-16 57.5 0.0 1.8 2 0 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.21 gi|344210574|ref|YP_004794894.1| - 1.8e-50 171.8 41.9 2.3e-50 171.5 41.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family YbgT_YccB PF08173.11 gi|344210574|ref|YP_004794894.1| - 0.053 13.7 1.6 0.85 9.8 1.6 3.3 1 0 0 1 1 1 0 Membrane bound YbgT-like protein ADH_zinc_N PF00107.26 gi|344210575|ref|YP_004794895.1| - 7.8e-39 132.6 0.3 6.1e-38 129.8 0.2 2.3 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|344210575|ref|YP_004794895.1| - 4.5e-22 79.5 0.0 7.9e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|344210575|ref|YP_004794895.1| - 2.2e-17 62.9 0.0 4.9e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|344210575|ref|YP_004794895.1| - 1.3e-05 24.7 0.2 1.9e-05 24.2 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|344210575|ref|YP_004794895.1| - 0.00012 21.5 3.0 0.00055 19.3 1.5 2.4 2 1 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DapB_N PF01113.20 gi|344210575|ref|YP_004794895.1| - 0.00084 19.5 0.3 0.0016 18.5 0.3 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.24 gi|344210575|ref|YP_004794895.1| - 0.0066 16.9 0.3 0.012 16.0 0.3 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|344210575|ref|YP_004794895.1| - 0.0088 15.4 0.0 0.56 9.5 0.0 2.3 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|344210575|ref|YP_004794895.1| - 0.043 13.7 1.3 0.23 11.3 0.9 1.9 1 1 1 2 2 2 0 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|344210575|ref|YP_004794895.1| - 0.087 11.9 0.1 0.19 10.8 0.1 1.5 1 1 1 2 2 2 0 RmlD substrate binding domain Epimerase PF01370.21 gi|344210575|ref|YP_004794895.1| - 0.1 12.0 0.3 0.15 11.5 0.3 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ACP_syn_III_C PF08541.10 gi|344210575|ref|YP_004794895.1| - 6.4 7.0 5.8 0.6 10.3 0.2 2.1 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF1427 PF07235.11 gi|344210576|ref|YP_004794896.1| - 5.4e-07 29.5 5.7 6e-07 29.3 5.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) Bacillus_PapR PF05968.11 gi|344210576|ref|YP_004794896.1| - 0.89 9.5 3.0 0.52 10.2 1.2 1.6 2 0 0 2 2 2 0 Bacillus PapR protein Zip PF02535.22 gi|344210577|ref|YP_004794897.1| - 2.2 7.4 6.2 0.65 9.2 0.3 2.0 2 0 0 2 2 2 0 ZIP Zinc transporter CarboxypepD_reg PF13620.6 gi|344210578|ref|YP_004794898.1| - 1.6e-14 53.9 16.4 5.7e-12 45.7 5.1 4.5 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain DDOST_48kD PF03345.14 gi|344210578|ref|YP_004794898.1| - 4.3e-10 39.0 0.1 1.1e-09 37.6 0.0 1.6 2 0 0 2 2 2 1 Oligosaccharyltransferase 48 kDa subunit beta ABC_transp_aux PF09822.9 gi|344210578|ref|YP_004794898.1| - 5.4e-09 35.9 0.0 1.1e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system PGF-CTERM PF18204.1 gi|344210578|ref|YP_004794898.1| - 0.00018 21.4 5.4 0.00033 20.5 5.4 1.5 1 0 0 1 1 1 1 PGF-CTERM motif PEGA PF08308.11 gi|344210578|ref|YP_004794898.1| - 0.0006 19.7 1.9 1.1 9.2 0.1 3.9 3 0 0 3 3 3 2 PEGA domain DUF4350 PF14258.6 gi|344210578|ref|YP_004794898.1| - 0.001 19.4 0.2 0.021 15.3 0.0 3.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) PHP PF02811.19 gi|344210578|ref|YP_004794898.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 PHP domain IU_nuc_hydro PF01156.19 gi|344210579|ref|YP_004794899.1| - 3.2e-74 250.3 4.6 3.7e-74 250.0 4.6 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase 5_nucleotid_C PF02872.18 gi|344210580|ref|YP_004794900.1| - 2.4e-50 170.8 0.9 4.4e-50 170.0 0.3 1.7 2 0 0 2 2 2 1 5'-nucleotidase, C-terminal domain UCR_Fe-S_N PF10399.9 gi|344210580|ref|YP_004794900.1| - 0.076 12.4 0.2 0.18 11.2 0.2 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|344210580|ref|YP_004794900.1| - 0.087 12.7 1.7 0.19 11.6 1.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Reprolysin_3 PF13582.6 gi|344210580|ref|YP_004794900.1| - 0.093 13.3 0.5 2.6 8.6 0.2 2.6 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Imm35 PF15567.6 gi|344210580|ref|YP_004794900.1| - 0.093 12.9 0.1 0.37 11.0 0.0 1.9 2 0 0 2 2 2 0 Immunity protein 35 Iron_transport PF10634.9 gi|344210581|ref|YP_004794901.1| - 4.3e-06 27.0 0.0 2.6e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 Fe2+ transport protein MR_MLE_C PF13378.6 gi|344210583|ref|YP_004794903.1| - 2.6e-42 144.9 0.5 3.7e-42 144.4 0.5 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210583|ref|YP_004794903.1| - 3.5e-11 43.3 0.0 6.1e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lactamase_B_2 PF12706.7 gi|344210584|ref|YP_004794904.1| - 1.3e-14 54.3 0.2 1.8e-14 53.7 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|344210584|ref|YP_004794904.1| - 1.1e-11 44.9 0.0 1.5e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TRAM_2 PF18693.1 gi|344210584|ref|YP_004794904.1| - 0.028 14.6 0.2 0.06 13.5 0.2 1.5 1 0 0 1 1 1 0 TRAM domain GFO_IDH_MocA PF01408.22 gi|344210585|ref|YP_004794905.1| - 1.5e-22 80.7 0.2 2.6e-22 79.9 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|344210585|ref|YP_004794905.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.7 1 1 1 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain Aldedh PF00171.22 gi|344210586|ref|YP_004794906.1| - 8.2e-163 542.2 1.0 9.4e-163 542.0 1.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family zf-Di19 PF05605.12 gi|344210587|ref|YP_004794907.1| - 0.013 15.7 0.6 0.019 15.2 0.6 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Peptidase_M48 PF01435.18 gi|344210588|ref|YP_004794908.1| - 5.9e-29 101.2 0.2 6.8e-27 94.5 0.2 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344210588|ref|YP_004794908.1| - 6.3e-07 28.9 0.0 1.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 Phage_holin_3_6 PF07332.11 gi|344210588|ref|YP_004794908.1| - 0.093 12.8 14.5 0.14 12.2 3.8 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III LapA_dom PF06305.11 gi|344210588|ref|YP_004794908.1| - 0.2 11.5 1.3 7.2 6.5 0.1 2.8 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain FAA_hydrolase PF01557.18 gi|344210589|ref|YP_004794909.1| - 5.6e-49 166.8 0.0 6.6e-49 166.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family UvrC_HhH_N PF08459.11 gi|344210590|ref|YP_004794910.1| - 1e-42 145.7 0.0 2e-42 144.7 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|344210590|ref|YP_004794910.1| - 6.9e-12 45.8 0.0 1.7e-11 44.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|344210590|ref|YP_004794910.1| - 1.7e-10 40.8 0.0 3.9e-10 39.7 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|344210590|ref|YP_004794910.1| - 1.5e-09 37.2 0.1 1.2e-05 24.9 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif UVR PF02151.19 gi|344210590|ref|YP_004794910.1| - 1.1e-08 34.6 3.9 2.6e-08 33.3 1.5 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|344210590|ref|YP_004794910.1| - 2.4e-07 30.9 0.0 4.1e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|344210590|ref|YP_004794910.1| - 0.00084 19.9 0.0 0.016 15.8 0.0 2.8 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|344210590|ref|YP_004794910.1| - 0.0021 18.4 0.0 1.1 9.7 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|344210590|ref|YP_004794910.1| - 0.018 15.3 0.0 0.49 10.7 0.0 2.4 1 1 1 2 2 2 0 Helix-hairpin-helix motif CsgA PF17334.2 gi|344210590|ref|YP_004794910.1| - 0.11 13.2 0.0 0.35 11.6 0.0 1.8 1 0 0 1 1 1 0 Minor curli fiber component A Hairy_orange PF07527.13 gi|344210590|ref|YP_004794910.1| - 0.14 12.3 0.0 0.43 10.8 0.0 1.8 2 0 0 2 2 1 0 Hairy Orange IMS_HHH PF11798.8 gi|344210590|ref|YP_004794910.1| - 0.17 12.3 0.0 0.69 10.4 0.0 2.0 2 0 0 2 2 2 0 IMS family HHH motif DUF3493 PF11998.8 gi|344210591|ref|YP_004794911.1| - 0.054 13.7 1.3 0.054 13.7 1.3 1.8 1 1 1 2 2 2 0 Low psii accumulation1 / Rep27 DUF588 PF04535.12 gi|344210592|ref|YP_004794912.1| - 0.58 9.9 5.2 0.89 9.3 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF588) Aminotran_5 PF00266.19 gi|344210593|ref|YP_004794913.1| - 1.5e-27 96.6 0.0 1.8e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V EspB PF05802.11 gi|344210593|ref|YP_004794913.1| - 0.005 16.9 0.0 0.048 13.6 0.0 2.5 3 1 1 4 4 4 1 Enterobacterial EspB protein TipAS PF07739.13 gi|344210593|ref|YP_004794913.1| - 0.16 12.5 2.7 0.55 10.8 0.9 2.6 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain HalOD1 PF18545.1 gi|344210595|ref|YP_004794915.1| - 5.4e-19 68.2 0.1 5.9e-19 68.1 0.1 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 MCPsignal PF00015.21 gi|344210596|ref|YP_004794916.1| - 4.7e-36 124.2 17.3 4.7e-36 124.2 17.3 5.4 3 1 3 6 6 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344210596|ref|YP_004794916.1| - 2e-12 47.3 0.8 2e-12 47.3 0.8 5.8 6 1 0 6 6 5 2 HAMP domain BLOC1_2 PF10046.9 gi|344210596|ref|YP_004794916.1| - 6.4e-07 29.6 17.8 0.012 15.9 0.1 5.5 4 1 2 6 6 6 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|344210596|ref|YP_004794916.1| - 1e-06 28.8 29.1 0.0054 16.8 1.2 5.1 3 2 2 5 5 5 3 Laminin Domain II DUF948 PF06103.11 gi|344210596|ref|YP_004794916.1| - 5.2e-06 26.6 39.3 0.0074 16.5 2.6 7.0 3 2 3 6 6 6 3 Bacterial protein of unknown function (DUF948) IFT57 PF10498.9 gi|344210596|ref|YP_004794916.1| - 2.9e-05 23.2 10.6 0.0046 16.0 1.3 3.2 3 0 0 3 3 3 2 Intra-flagellar transport protein 57 Mod_r PF07200.13 gi|344210596|ref|YP_004794916.1| - 7.2e-05 22.9 6.7 0.87 9.7 0.2 4.3 3 1 1 4 4 4 1 Modifier of rudimentary (Mod(r)) protein DUF1664 PF07889.12 gi|344210596|ref|YP_004794916.1| - 0.00035 20.6 24.4 0.19 11.7 1.3 5.4 3 2 4 7 7 7 2 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|344210596|ref|YP_004794916.1| - 0.00071 18.6 21.3 0.02 13.8 2.5 3.3 3 1 0 3 3 3 2 Spc7 kinetochore protein MAD PF05557.13 gi|344210596|ref|YP_004794916.1| - 0.00077 18.0 3.7 0.00077 18.0 3.7 2.9 2 1 1 3 3 3 1 Mitotic checkpoint protein AAA_13 PF13166.6 gi|344210596|ref|YP_004794916.1| - 0.0012 17.6 20.1 0.018 13.7 3.5 2.1 1 1 0 2 2 2 2 AAA domain KASH_CCD PF14662.6 gi|344210596|ref|YP_004794916.1| - 0.0032 17.3 0.8 0.0032 17.3 0.8 4.2 3 1 0 4 4 4 1 Coiled-coil region of CCDC155 or KASH ATP-synt_B PF00430.18 gi|344210596|ref|YP_004794916.1| - 0.0042 17.2 4.8 0.0042 17.2 4.8 4.5 2 2 2 4 4 3 1 ATP synthase B/B' CF(0) NPV_P10 PF05531.12 gi|344210596|ref|YP_004794916.1| - 0.0047 17.4 23.7 0.7 10.4 2.1 5.0 2 1 2 4 4 3 2 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.12 gi|344210596|ref|YP_004794916.1| - 0.0058 16.7 28.6 0.18 11.9 1.6 4.9 3 2 0 4 4 4 1 TPR/MLP1/MLP2-like protein RPW8 PF05659.11 gi|344210596|ref|YP_004794916.1| - 0.0077 15.9 3.7 15 5.3 0.0 5.1 3 2 2 6 6 6 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Alanine_zipper PF11839.8 gi|344210596|ref|YP_004794916.1| - 0.014 15.8 6.3 0.014 15.8 6.3 6.6 6 2 1 7 7 4 0 Alanine-zipper, major outer membrane lipoprotein Laminin_I PF06008.14 gi|344210596|ref|YP_004794916.1| - 0.021 14.5 21.2 0.75 9.5 4.6 4.1 3 1 1 4 4 4 0 Laminin Domain I TolA_bind_tri PF16331.5 gi|344210596|ref|YP_004794916.1| - 0.028 14.5 0.2 0.028 14.5 0.2 4.6 5 1 0 6 6 5 0 TolA binding protein trimerisation Fib_alpha PF08702.10 gi|344210596|ref|YP_004794916.1| - 0.029 14.5 6.7 4.1 7.6 0.1 4.0 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|344210596|ref|YP_004794916.1| - 0.03 14.4 8.1 5.6 7.0 0.0 4.0 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus EzrA PF06160.12 gi|344210596|ref|YP_004794916.1| - 0.03 12.5 19.0 0.063 11.5 0.8 3.8 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA Sec8_exocyst PF04048.14 gi|344210596|ref|YP_004794916.1| - 0.034 14.0 5.0 11 5.9 0.0 4.3 4 2 1 5 5 4 0 Sec8 exocyst complex component specific domain APG6_N PF17675.1 gi|344210596|ref|YP_004794916.1| - 0.037 14.6 24.6 0.35 11.4 0.6 4.2 3 1 1 4 4 4 0 Apg6 coiled-coil region CENP-H PF05837.12 gi|344210596|ref|YP_004794916.1| - 0.041 14.3 19.5 0.048 14.1 1.6 4.8 2 1 1 4 4 4 0 Centromere protein H (CENP-H) Seryl_tRNA_N PF02403.22 gi|344210596|ref|YP_004794916.1| - 0.046 14.0 17.6 1.1 9.6 0.4 5.1 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Prominin PF05478.11 gi|344210596|ref|YP_004794916.1| - 0.054 11.5 7.5 0.6 8.0 0.5 2.6 2 1 0 2 2 2 0 Prominin DUF2913 PF11140.8 gi|344210596|ref|YP_004794916.1| - 0.057 13.2 3.4 2.7 7.7 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2913) Fzo_mitofusin PF04799.13 gi|344210596|ref|YP_004794916.1| - 0.079 12.5 12.4 12 5.4 0.2 4.7 3 2 1 5 5 5 0 fzo-like conserved region GldM_N PF12081.8 gi|344210596|ref|YP_004794916.1| - 0.081 13.0 18.0 1 9.4 0.0 4.4 1 1 2 4 4 4 0 GldM N-terminal domain TMPIT PF07851.13 gi|344210596|ref|YP_004794916.1| - 0.094 11.9 4.9 34 3.5 0.0 3.9 3 1 1 4 4 4 0 TMPIT-like protein BAR PF03114.18 gi|344210596|ref|YP_004794916.1| - 0.13 11.9 14.8 0.66 9.6 3.4 3.7 3 1 0 3 3 3 0 BAR domain Arfaptin PF06456.13 gi|344210596|ref|YP_004794916.1| - 0.14 11.7 3.7 0.26 10.8 0.0 2.6 2 1 0 2 2 2 0 Arfaptin-like domain DegS PF05384.11 gi|344210596|ref|YP_004794916.1| - 0.16 11.5 16.2 0.4 10.2 0.3 4.7 3 2 0 4 4 4 0 Sensor protein DegS Jnk-SapK_ap_N PF09744.9 gi|344210596|ref|YP_004794916.1| - 0.16 12.2 12.4 9.2 6.5 0.4 4.1 3 1 1 4 4 4 0 JNK_SAPK-associated protein-1 Hormone_1 PF00103.20 gi|344210596|ref|YP_004794916.1| - 0.18 11.5 1.6 0.46 10.2 0.4 2.2 2 1 0 2 2 2 0 Somatotropin hormone family BAR_3 PF16746.5 gi|344210596|ref|YP_004794916.1| - 0.51 10.0 3.5 3.4 7.3 0.0 3.2 3 1 0 3 3 3 0 BAR domain of APPL family DUF4200 PF13863.6 gi|344210596|ref|YP_004794916.1| - 0.53 10.7 16.3 2 8.8 0.3 4.3 3 1 1 4 4 4 0 Domain of unknown function (DUF4200) Golgin_A5 PF09787.9 gi|344210596|ref|YP_004794916.1| - 0.55 9.6 19.2 0.16 11.4 1.4 2.9 2 1 0 2 2 2 0 Golgin subfamily A member 5 Serine_rich PF08824.10 gi|344210596|ref|YP_004794916.1| - 0.6 10.1 15.1 0.17 11.9 0.4 3.7 3 1 1 4 4 4 0 Serine rich protein interaction domain Prefoldin_2 PF01920.20 gi|344210596|ref|YP_004794916.1| - 0.64 10.0 15.9 1.2 9.1 0.9 4.8 3 2 1 4 4 4 0 Prefoldin subunit COG2 PF06148.11 gi|344210596|ref|YP_004794916.1| - 0.65 10.1 16.4 9.7 6.3 0.2 5.7 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Sec34 PF04136.15 gi|344210596|ref|YP_004794916.1| - 0.88 9.4 13.7 10 6.0 0.0 5.3 4 2 2 6 6 6 0 Sec34-like family BAR_2 PF10455.9 gi|344210596|ref|YP_004794916.1| - 1.2 8.2 12.8 0.021 14.0 1.4 2.9 2 1 1 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking T2SSF PF00482.23 gi|344210596|ref|YP_004794916.1| - 1.3 8.9 16.2 4 7.4 0.8 4.5 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein F HMMR_N PF15905.5 gi|344210596|ref|YP_004794916.1| - 1.4 8.3 15.4 1.9 7.9 1.9 3.5 2 1 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal CENP-F_leu_zip PF10473.9 gi|344210596|ref|YP_004794916.1| - 1.8 8.6 21.9 0.38 10.8 0.5 4.5 4 2 1 5 5 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4795 PF16043.5 gi|344210596|ref|YP_004794916.1| - 2.1 7.9 20.8 4.8 6.7 2.3 3.5 1 1 1 3 3 3 0 Domain of unknown function (DUF4795) Cep57_CLD_2 PF14197.6 gi|344210596|ref|YP_004794916.1| - 2.7 8.2 16.9 2 8.6 1.5 4.6 5 1 0 5 5 4 0 Centrosome localisation domain of PPC89 Snapin_Pallidin PF14712.6 gi|344210596|ref|YP_004794916.1| - 2.7 8.5 7.0 8 7.0 0.1 4.2 3 2 3 6 6 5 0 Snapin/Pallidin DASH_Dad2 PF08654.10 gi|344210596|ref|YP_004794916.1| - 2.9 8.4 18.0 0.84 10.1 0.9 4.7 2 1 1 4 4 4 0 DASH complex subunit Dad2 DUF3450 PF11932.8 gi|344210596|ref|YP_004794916.1| - 3.1 7.0 28.1 2.6 7.3 0.5 4.8 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) Baculo_PEP_C PF04513.12 gi|344210596|ref|YP_004794916.1| - 4.6 7.3 24.7 2.8 8.0 4.2 4.5 3 2 2 5 5 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus HOOK PF05622.12 gi|344210596|ref|YP_004794916.1| - 5 5.1 16.4 0.14 10.3 2.4 3.1 2 1 0 3 3 3 0 HOOK protein Tweety PF04906.13 gi|344210596|ref|YP_004794916.1| - 5 5.7 15.1 1.9 7.0 0.7 3.4 2 1 2 4 4 4 0 Tweety HIP1_clath_bdg PF16515.5 gi|344210596|ref|YP_004794916.1| - 5.3 7.7 18.5 14 6.4 0.2 4.8 3 2 0 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF16 PF01519.16 gi|344210596|ref|YP_004794916.1| - 5.6 7.5 16.2 3.5 8.2 0.3 4.3 3 2 3 6 6 5 0 Protein of unknown function DUF16 DUF5082 PF16888.5 gi|344210596|ref|YP_004794916.1| - 6 7.2 11.7 5 7.4 0.5 4.1 2 2 3 5 5 5 0 Domain of unknown function (DUF5082) Syntaxin-6_N PF09177.11 gi|344210596|ref|YP_004794916.1| - 6.5 7.4 23.2 0.97 10.0 0.1 5.2 2 2 2 4 4 3 0 Syntaxin 6, N-terminal FlaC_arch PF05377.11 gi|344210596|ref|YP_004794916.1| - 8.4 6.9 17.1 7.9 7.0 0.2 5.8 6 2 1 7 7 5 0 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|344210596|ref|YP_004794916.1| - 8.4 6.9 16.2 6.4 7.3 0.1 4.8 3 1 2 5 5 5 0 Cell division protein ZapB Bac_rhodopsin PF01036.18 gi|344210597|ref|YP_004794917.1| - 3.8e-23 82.2 17.4 4.7e-23 81.9 17.4 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DNA_ligase_aden PF01653.18 gi|344210598|ref|YP_004794918.1| - 5.9e-111 370.6 0.0 7.6e-111 370.2 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|344210598|ref|YP_004794918.1| - 1.1e-28 98.9 2.6 2.2e-28 98.0 2.6 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|344210598|ref|YP_004794918.1| - 5e-17 61.7 0.5 6.9e-15 54.9 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|344210598|ref|YP_004794918.1| - 8.9e-15 55.0 0.0 1.5e-07 31.9 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|344210598|ref|YP_004794918.1| - 9.6e-13 48.3 0.0 1.9e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 gi|344210598|ref|YP_004794918.1| - 2.3e-05 24.3 2.4 8e-05 22.6 2.4 2.0 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.23 gi|344210598|ref|YP_004794918.1| - 0.00086 19.1 0.0 0.23 11.4 0.0 3.9 4 0 0 4 4 4 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|344210598|ref|YP_004794918.1| - 0.002 18.7 0.0 0.027 15.1 0.0 2.7 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Response_reg PF00072.24 gi|344210599|ref|YP_004794919.1| - 6.9e-21 74.5 0.0 1.2e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.12 gi|344210599|ref|YP_004794919.1| - 6.2e-15 55.3 0.5 5.4e-14 52.2 0.0 2.7 3 0 0 3 3 3 1 PAS fold PAS_4 PF08448.10 gi|344210599|ref|YP_004794919.1| - 7.2e-10 39.1 3.7 1.7e-08 34.7 0.0 3.0 4 0 0 4 4 4 1 PAS fold PAS_8 PF13188.7 gi|344210599|ref|YP_004794919.1| - 9.2e-06 25.6 0.0 3.6e-05 23.7 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|344210599|ref|YP_004794919.1| - 3.3e-05 24.1 0.0 0.0022 18.2 0.0 2.5 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|344210599|ref|YP_004794919.1| - 0.0047 17.2 0.0 0.0093 16.2 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.25 gi|344210599|ref|YP_004794919.1| - 0.019 15.0 0.0 0.24 11.4 0.0 2.7 3 0 0 3 3 3 0 PAS fold ABC2_membrane_2 PF12679.7 gi|344210600|ref|YP_004794920.1| - 1.4e-09 37.7 0.0 1.5e-09 37.6 0.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|344210601|ref|YP_004794921.1| - 4.4e-45 154.2 17.8 5.7e-45 153.8 17.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|344210601|ref|YP_004794921.1| - 4.7e-07 29.6 3.3 4.7e-07 29.6 3.3 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|344210601|ref|YP_004794921.1| - 9.1e-06 25.2 8.7 9.1e-06 25.2 8.7 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|344210601|ref|YP_004794921.1| - 2.2e-05 24.5 7.7 2.2e-05 24.5 7.7 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|344210601|ref|YP_004794921.1| - 9.1e-05 21.7 10.3 0.00014 21.1 10.3 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF3464 PF11947.8 gi|344210601|ref|YP_004794921.1| - 0.26 11.0 0.8 0.68 9.7 0.8 1.7 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 ABC_tran PF00005.27 gi|344210602|ref|YP_004794922.1| - 3.1e-29 102.2 0.0 5e-29 101.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210602|ref|YP_004794922.1| - 6.8e-12 45.8 0.1 2.4e-07 30.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|344210602|ref|YP_004794922.1| - 1.6e-07 31.9 0.0 4.6e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|344210602|ref|YP_004794922.1| - 0.0036 17.8 0.7 0.0073 16.8 0.7 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344210602|ref|YP_004794922.1| - 0.0036 16.8 0.1 0.76 9.2 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|344210602|ref|YP_004794922.1| - 0.0041 16.9 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|344210602|ref|YP_004794922.1| - 0.012 15.3 0.1 0.09 12.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|344210602|ref|YP_004794922.1| - 0.015 15.3 0.1 1.2 9.2 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|344210602|ref|YP_004794922.1| - 0.032 14.0 0.1 0.075 12.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344210602|ref|YP_004794922.1| - 0.085 12.8 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_10 PF12846.7 gi|344210602|ref|YP_004794922.1| - 0.1 11.5 0.0 0.19 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_27 PF13514.6 gi|344210602|ref|YP_004794922.1| - 0.14 11.7 0.1 0.52 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|344210602|ref|YP_004794922.1| - 0.25 11.0 0.0 1.7 8.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Beta_helix PF13229.6 gi|344210604|ref|YP_004794924.1| - 4.6e-23 81.8 16.2 1e-20 74.2 2.0 3.0 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|344210604|ref|YP_004794924.1| - 4.6e-09 35.9 2.9 3.4e-06 26.5 0.3 2.7 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Transglut_core PF01841.19 gi|344210605|ref|YP_004794925.1| - 1.4e-29 102.8 1.2 5.9e-29 100.8 0.0 2.5 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF3488 PF11992.8 gi|344210605|ref|YP_004794925.1| - 0.00015 20.8 0.7 0.00015 20.8 0.7 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF3488) DUF4129 PF13559.6 gi|344210605|ref|YP_004794925.1| - 0.00038 20.7 4.8 0.00038 20.7 4.8 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) YtkA PF13115.6 gi|344210605|ref|YP_004794925.1| - 0.00071 20.1 2.5 1.3 9.6 0.0 3.8 3 0 0 3 3 3 2 YtkA-like Transglut_core3 PF13471.6 gi|344210605|ref|YP_004794925.1| - 0.0018 18.2 0.1 0.013 15.4 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase-like superfamily Flp_Fap PF04964.14 gi|344210606|ref|YP_004794926.1| - 0.0053 16.6 1.0 0.015 15.2 1.0 1.8 1 0 0 1 1 1 1 Flp/Fap pilin component Sporozoite_P67 PF05642.11 gi|344210606|ref|YP_004794926.1| - 0.22 9.6 0.4 0.22 9.6 0.4 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF58 PF01882.18 gi|344210607|ref|YP_004794927.1| - 6.1e-17 61.7 0.1 1.8e-16 60.2 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|344210607|ref|YP_004794927.1| - 3.7e-10 40.0 2.2 3.7e-10 40.0 2.2 2.7 3 1 0 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|344210607|ref|YP_004794927.1| - 4.3e-08 33.3 0.5 1.4e-07 31.7 0.5 2.0 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|344210607|ref|YP_004794927.1| - 1.2e-05 24.8 0.0 2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|344210607|ref|YP_004794927.1| - 0.0024 18.1 0.1 0.0054 17.0 0.1 1.6 1 0 0 1 1 1 1 CARDB SHOCT PF09851.9 gi|344210609|ref|YP_004794929.1| - 4.4e-06 26.2 0.8 4.4e-06 26.2 0.8 1.8 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.11 gi|344210609|ref|YP_004794929.1| - 1.8e-05 24.7 2.4 3.4e-05 23.8 2.4 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF3367 PF11847.8 gi|344210609|ref|YP_004794929.1| - 0.24 9.2 2.3 0.31 8.9 2.3 1.1 1 0 0 1 1 1 0 Alpha-(1->3)-arabinofuranosyltransferase GvpG PF05120.12 gi|344210609|ref|YP_004794929.1| - 1.1 9.3 5.9 0.78 9.8 4.2 1.6 1 1 0 1 1 1 0 Gas vesicle protein G PsbJ PF01788.17 gi|344210609|ref|YP_004794929.1| - 2 8.3 5.7 3.6 7.6 2.1 2.1 2 0 0 2 2 2 0 PsbJ Multi_Drug_Res PF00893.19 gi|344210610|ref|YP_004794930.1| - 1e-25 90.2 1.4 1.4e-25 89.8 1.4 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|344210610|ref|YP_004794930.1| - 0.023 14.8 5.7 0.028 14.6 5.7 1.3 1 0 0 1 1 1 0 EamA-like transporter family TrmB PF01978.19 gi|344210611|ref|YP_004794931.1| - 6.8e-20 70.7 0.0 1.7e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344210611|ref|YP_004794931.1| - 0.0012 18.6 0.0 0.0035 17.1 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344210611|ref|YP_004794931.1| - 0.0028 17.5 0.5 0.0061 16.4 0.0 1.9 2 0 0 2 2 2 1 MarR family SusD_RagB PF07980.11 gi|344210611|ref|YP_004794931.1| - 0.0043 16.7 0.0 0.0062 16.2 0.0 1.1 1 0 0 1 1 1 1 SusD family PadR PF03551.14 gi|344210611|ref|YP_004794931.1| - 0.063 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family E2F_TDP PF02319.20 gi|344210611|ref|YP_004794931.1| - 0.068 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain HTH_CodY PF08222.11 gi|344210611|ref|YP_004794931.1| - 0.18 11.4 0.2 0.49 10.0 0.1 1.8 2 0 0 2 2 2 0 CodY helix-turn-helix domain AAA_3 PF07726.11 gi|344210612|ref|YP_004794932.1| - 3e-65 218.0 0.1 4.4e-65 217.4 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|344210612|ref|YP_004794932.1| - 1.4e-14 53.7 1.5 2.5e-14 52.8 1.5 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|344210612|ref|YP_004794932.1| - 3.3e-14 53.0 0.0 6.2e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|344210612|ref|YP_004794932.1| - 0.0002 21.8 0.0 0.00065 20.1 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|344210612|ref|YP_004794932.1| - 0.00027 20.7 0.0 0.0014 18.4 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|344210612|ref|YP_004794932.1| - 0.0027 16.8 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|344210612|ref|YP_004794932.1| - 0.032 14.0 0.0 0.38 10.5 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|344210612|ref|YP_004794932.1| - 0.072 12.5 0.0 3 7.2 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|344210612|ref|YP_004794932.1| - 0.18 11.1 0.0 0.33 10.3 0.0 1.3 1 0 0 1 1 1 0 KaiC Cys_Met_Meta_PP PF01053.20 gi|344210613|ref|YP_004794933.1| - 1e-130 435.7 0.0 1.2e-130 435.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|344210613|ref|YP_004794933.1| - 1.3e-10 41.1 0.0 1.9e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|344210613|ref|YP_004794933.1| - 1.1e-07 31.5 0.3 2.1e-07 30.6 0.3 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|344210613|ref|YP_004794933.1| - 9e-07 28.2 0.0 1.3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Abhydrolase_1 PF00561.20 gi|344210614|ref|YP_004794934.1| - 8.5e-31 107.5 0.4 1.1e-30 107.2 0.4 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344210614|ref|YP_004794934.1| - 0.00043 19.6 0.0 0.0016 17.8 0.0 1.8 2 0 0 2 2 2 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|344210614|ref|YP_004794934.1| - 0.0005 19.6 0.2 1.1 8.6 0.1 2.6 2 1 0 2 2 2 2 Prolyl oligopeptidase family GRA6 PF05084.13 gi|344210614|ref|YP_004794934.1| - 0.049 13.6 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Granule antigen protein (GRA6) zf-ribbon_3 PF13248.6 gi|344210615|ref|YP_004794935.1| - 0.0093 15.3 2.8 1.3 8.5 1.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|344210615|ref|YP_004794935.1| - 0.01 15.8 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|344210615|ref|YP_004794935.1| - 0.031 14.0 0.4 0.031 14.0 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Anti-TRAP PF15777.5 gi|344210615|ref|YP_004794935.1| - 0.95 9.5 3.8 1.7 8.7 3.8 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein HalOD2 PF18547.1 gi|344210615|ref|YP_004794935.1| - 1.9 8.4 9.0 2 8.4 0.2 3.1 3 0 0 3 3 3 0 Halobacterial output domain 2 HscB_4_cys PF18256.1 gi|344210615|ref|YP_004794935.1| - 2.5 8.0 7.2 18 5.3 7.2 2.3 1 1 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif ApbA PF02558.16 gi|344210617|ref|YP_004794937.1| - 2.4e-31 108.4 0.0 4.6e-31 107.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.11 gi|344210617|ref|YP_004794937.1| - 1.4e-30 106.0 0.3 2.2e-30 105.4 0.3 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.17 gi|344210617|ref|YP_004794937.1| - 0.0021 18.6 0.0 0.0068 17.0 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|344210617|ref|YP_004794937.1| - 0.041 14.1 0.1 0.097 12.9 0.1 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_8 PF13450.6 gi|344210617|ref|YP_004794937.1| - 0.071 13.4 0.5 0.53 10.5 0.2 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344210617|ref|YP_004794937.1| - 0.071 12.7 4.7 0.14 11.7 4.7 1.7 1 1 0 1 1 1 0 FAD dependent oxidoreductase MR_MLE_C PF13378.6 gi|344210618|ref|YP_004794938.1| - 1.6e-64 217.5 1.1 2.2e-64 217.0 1.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210618|ref|YP_004794938.1| - 1.9e-26 92.6 0.0 3.7e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF1485 PF07364.12 gi|344210618|ref|YP_004794938.1| - 0.017 14.4 0.1 0.042 13.1 0.0 1.6 2 0 0 2 2 2 0 Metallopeptidase family M81 Ku_C PF03730.14 gi|344210618|ref|YP_004794938.1| - 0.1 13.3 0.0 0.27 11.9 0.0 1.7 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm DUF502 PF04367.13 gi|344210619|ref|YP_004794939.1| - 9.8e-18 64.0 0.0 9.8e-18 64.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Fijivirus_P9-2 PF06837.11 gi|344210619|ref|YP_004794939.1| - 0.14 11.6 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Fijivirus P9-2 protein UBA_5 PF16577.5 gi|344210619|ref|YP_004794939.1| - 0.16 12.1 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 UBA domain Sigma_reg_N PF13800.6 gi|344210619|ref|YP_004794939.1| - 4.3 7.7 5.6 6.4 7.1 0.2 2.9 3 0 0 3 3 3 0 Sigma factor regulator N-terminal ABC2_membrane_3 PF12698.7 gi|344210619|ref|YP_004794939.1| - 9.4 5.2 9.9 14 4.6 9.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Aminotran_4 PF01063.19 gi|344210620|ref|YP_004794940.1| - 1.7e-50 171.9 0.0 2e-50 171.7 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DHBP_synthase PF00926.19 gi|344210622|ref|YP_004794942.1| - 1.8e-59 200.5 0.2 2.1e-59 200.3 0.2 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|344210623|ref|YP_004794943.1| - 1e-46 158.0 0.0 1.4e-46 157.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|344210623|ref|YP_004794943.1| - 1.2e-07 31.7 0.8 2.6e-07 30.6 0.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210623|ref|YP_004794943.1| - 2e-07 30.5 0.1 3.6e-07 29.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344210623|ref|YP_004794943.1| - 3.3e-06 26.9 0.4 5.9e-06 26.1 0.4 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210623|ref|YP_004794943.1| - 2.5e-05 24.1 0.0 4.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|344210623|ref|YP_004794943.1| - 2.7e-05 24.3 0.0 6.9e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|344210623|ref|YP_004794943.1| - 4.3e-05 23.4 0.1 7.3e-05 22.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|344210623|ref|YP_004794943.1| - 5.8e-05 23.0 0.2 0.00018 21.4 0.1 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344210623|ref|YP_004794943.1| - 8.6e-05 22.3 1.0 8.6e-05 22.3 1.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210623|ref|YP_004794943.1| - 0.00049 19.8 0.1 0.0011 18.7 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|344210623|ref|YP_004794943.1| - 0.0021 18.2 0.1 0.29 11.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|344210623|ref|YP_004794943.1| - 0.007 16.8 0.1 0.013 16.0 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|344210623|ref|YP_004794943.1| - 0.0086 15.9 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|344210623|ref|YP_004794943.1| - 0.013 15.3 0.4 0.024 14.4 0.4 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|344210623|ref|YP_004794943.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|344210623|ref|YP_004794943.1| - 0.026 14.5 0.1 0.047 13.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|344210623|ref|YP_004794943.1| - 0.03 14.7 0.0 0.058 13.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|344210623|ref|YP_004794943.1| - 0.058 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|344210623|ref|YP_004794943.1| - 0.11 12.1 0.3 0.24 11.1 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|344210623|ref|YP_004794943.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Wyosine_form PF08608.12 gi|344210625|ref|YP_004794945.1| - 4.9e-20 71.6 0.1 1.1e-19 70.5 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|344210625|ref|YP_004794945.1| - 8.7e-19 68.5 0.4 1.7e-18 67.5 0.4 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Zn-ribbon_8 PF09723.10 gi|344210627|ref|YP_004794947.1| - 1.3e-08 34.8 1.7 1.6e-08 34.5 1.7 1.1 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|344210627|ref|YP_004794947.1| - 3.5e-05 23.8 0.3 3.8e-05 23.7 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|344210627|ref|YP_004794947.1| - 0.00033 20.5 2.1 0.017 15.0 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal zf-C2H2 PF00096.26 gi|344210627|ref|YP_004794947.1| - 0.0028 18.0 0.5 0.27 11.8 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type DZR PF12773.7 gi|344210627|ref|YP_004794947.1| - 0.004 17.1 0.6 0.0054 16.7 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|344210627|ref|YP_004794947.1| - 0.0052 16.4 1.3 1.3 8.6 0.1 2.2 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-RING_7 PF02591.15 gi|344210627|ref|YP_004794947.1| - 0.0062 16.7 0.5 1 9.6 0.1 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain Rubredoxin_2 PF18073.1 gi|344210627|ref|YP_004794947.1| - 0.0089 15.7 2.6 0.31 10.8 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain Zn_Tnp_IS1 PF03811.13 gi|344210627|ref|YP_004794947.1| - 0.0097 15.6 4.6 0.21 11.3 1.4 2.1 2 0 0 2 2 2 1 InsA N-terminal domain zf-ribbon_3 PF13248.6 gi|344210627|ref|YP_004794947.1| - 0.011 15.1 3.0 0.65 9.5 3.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain ADK_lid PF05191.14 gi|344210627|ref|YP_004794947.1| - 0.014 15.4 3.1 0.29 11.1 0.3 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid DNA_ligase_ZBD PF03119.16 gi|344210627|ref|YP_004794947.1| - 0.023 14.7 1.5 0.023 14.7 1.5 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain A2L_zn_ribbon PF08792.10 gi|344210627|ref|YP_004794947.1| - 0.026 14.3 0.4 2.1 8.2 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|344210627|ref|YP_004794947.1| - 0.038 13.7 2.8 0.21 11.4 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|344210627|ref|YP_004794947.1| - 0.039 13.7 2.4 1.5 8.7 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|344210627|ref|YP_004794947.1| - 0.039 13.9 2.5 2.5 8.1 2.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|344210627|ref|YP_004794947.1| - 0.04 14.3 0.0 0.048 14.0 0.0 1.2 1 0 0 1 1 1 0 Probable Zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|344210627|ref|YP_004794947.1| - 0.04 14.7 0.4 3.8 8.6 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_Tnp_IS91 PF14319.6 gi|344210627|ref|YP_004794947.1| - 0.042 13.9 0.1 0.047 13.7 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-trcl PF13451.6 gi|344210627|ref|YP_004794947.1| - 0.051 13.5 3.0 2.3 8.2 1.0 2.6 2 1 1 3 3 3 0 Probable zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|344210627|ref|YP_004794947.1| - 0.058 13.2 0.4 2 8.3 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.7 gi|344210627|ref|YP_004794947.1| - 0.068 13.6 3.7 1.3 9.5 0.5 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.6 gi|344210627|ref|YP_004794947.1| - 0.069 13.3 3.4 2 8.6 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.20 gi|344210627|ref|YP_004794947.1| - 0.077 13.0 2.0 1.9 8.6 0.2 2.1 1 1 1 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.6 gi|344210627|ref|YP_004794947.1| - 0.087 12.8 3.0 0.13 12.2 3.0 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 PhnA_Zn_Ribbon PF08274.12 gi|344210627|ref|YP_004794947.1| - 0.11 12.5 1.3 10 6.2 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon CpXC PF14353.6 gi|344210627|ref|YP_004794947.1| - 0.11 12.5 2.6 4.4 7.4 0.2 2.1 1 1 1 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|344210627|ref|YP_004794947.1| - 0.13 11.8 5.4 2.3 7.8 5.9 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|344210627|ref|YP_004794947.1| - 0.13 12.1 4.2 5.3 7.0 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37ae PF01780.19 gi|344210627|ref|YP_004794947.1| - 0.18 11.9 0.9 0.6 10.2 0.9 1.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.11 gi|344210627|ref|YP_004794947.1| - 0.18 11.8 2.9 1.3 9.0 2.6 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2072 PF09845.9 gi|344210627|ref|YP_004794947.1| - 0.22 11.8 0.7 0.27 11.5 0.7 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein UPF0547 PF10571.9 gi|344210627|ref|YP_004794947.1| - 0.3 11.2 6.6 3.9 7.6 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.6 gi|344210627|ref|YP_004794947.1| - 0.62 9.7 3.0 8.7 6.1 0.9 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF1936 PF09151.10 gi|344210627|ref|YP_004794947.1| - 1.6 8.7 4.9 2.9 7.9 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) YhfH PF14149.6 gi|344210627|ref|YP_004794947.1| - 3.4 7.7 5.9 16 5.6 0.3 2.2 1 1 1 2 2 2 0 YhfH-like protein CMD PF02627.20 gi|344210628|ref|YP_004794948.1| - 5e-11 42.5 0.4 9.1e-11 41.7 0.4 1.5 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1440 PF07274.12 gi|344210629|ref|YP_004794949.1| - 0.33 11.3 4.7 0.42 11.0 2.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) Chloroplast_duf PF14476.6 gi|344210629|ref|YP_004794949.1| - 0.68 8.8 2.6 0.91 8.4 2.6 1.1 1 0 0 1 1 1 0 Petal formation-expressed TrmB PF01978.19 gi|344210630|ref|YP_004794950.1| - 3.7e-08 33.1 0.0 5.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|344210630|ref|YP_004794950.1| - 1.1e-06 28.4 0.1 3.3e-05 23.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344210630|ref|YP_004794950.1| - 3.9e-06 26.6 0.0 1e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|344210630|ref|YP_004794950.1| - 5.5e-06 26.3 0.3 1.6e-05 24.9 0.1 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210630|ref|YP_004794950.1| - 3.5e-05 23.6 0.0 6.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210630|ref|YP_004794950.1| - 0.00058 19.4 0.0 0.00084 18.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|344210630|ref|YP_004794950.1| - 0.0011 18.8 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|344210630|ref|YP_004794950.1| - 0.0011 18.5 0.2 0.0024 17.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.11 gi|344210630|ref|YP_004794950.1| - 0.0013 18.3 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344210630|ref|YP_004794950.1| - 0.0013 18.6 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|344210630|ref|YP_004794950.1| - 0.0014 18.4 0.0 0.0026 17.6 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_28 PF13518.6 gi|344210630|ref|YP_004794950.1| - 0.017 15.2 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|344210630|ref|YP_004794950.1| - 0.032 14.0 0.0 0.06 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|344210630|ref|YP_004794950.1| - 0.034 14.5 0.0 0.064 13.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.6 gi|344210630|ref|YP_004794950.1| - 0.048 13.7 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.12 gi|344210630|ref|YP_004794950.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain NifU PF01106.17 gi|344210631|ref|YP_004794951.1| - 1e-14 54.4 0.2 2e-14 53.5 0.1 1.5 1 1 0 1 1 1 1 NifU-like domain CarS-like PF01864.17 gi|344210632|ref|YP_004794952.1| - 6.1e-45 153.3 0.6 7.4e-45 153.1 0.6 1.1 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|344210632|ref|YP_004794952.1| - 0.00044 20.1 2.2 0.00044 20.1 2.2 1.9 1 1 0 1 1 1 1 Cytidylyltransferase family Porphobil_deam PF01379.20 gi|344210634|ref|YP_004794954.1| - 3.8e-65 219.2 1.1 1.2e-51 175.1 0.8 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|344210634|ref|YP_004794954.1| - 3.1e-10 40.3 0.1 8.2e-10 38.9 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Uds1 PF15456.6 gi|344210634|ref|YP_004794954.1| - 1.6 8.9 6.0 0.11 12.6 0.6 1.8 2 0 0 2 2 2 0 Up-regulated During Septation TP_methylase PF00590.20 gi|344210635|ref|YP_004794955.1| - 1.2e-55 188.8 0.7 1.4e-55 188.6 0.7 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RFamide_26RFa PF11109.8 gi|344210635|ref|YP_004794955.1| - 0.21 12.1 0.0 0.35 11.4 0.0 1.3 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 HEM4 PF02602.15 gi|344210636|ref|YP_004794956.1| - 4.9e-43 147.1 1.4 5.8e-43 146.9 1.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD NMT1_3 PF16868.5 gi|344210636|ref|YP_004794956.1| - 0.059 12.8 0.1 0.075 12.4 0.1 1.1 1 0 0 1 1 1 0 NMT1-like family PspA_IM30 PF04012.12 gi|344210637|ref|YP_004794957.1| - 6.8e-29 101.0 24.3 8e-29 100.8 24.3 1.0 1 0 0 1 1 1 1 PspA/IM30 family YabA PF06156.13 gi|344210637|ref|YP_004794957.1| - 0.00053 20.6 11.9 0.011 16.4 0.2 3.3 2 1 0 3 3 3 2 Initiation control protein YabA AAA_13 PF13166.6 gi|344210637|ref|YP_004794957.1| - 0.0017 17.1 11.0 0.0021 16.8 11.0 1.1 1 0 0 1 1 1 1 AAA domain APG6_N PF17675.1 gi|344210637|ref|YP_004794957.1| - 0.01 16.3 24.2 0.11 13.1 1.2 3.2 2 1 1 3 3 3 0 Apg6 coiled-coil region DUF3450 PF11932.8 gi|344210637|ref|YP_004794957.1| - 0.011 15.0 20.5 0.18 11.1 0.8 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|344210637|ref|YP_004794957.1| - 0.012 16.1 0.9 0.012 16.1 0.9 3.9 3 2 0 3 3 3 0 Cell division protein ZapB DUF3535 PF12054.8 gi|344210637|ref|YP_004794957.1| - 0.014 14.7 3.8 0.02 14.2 3.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) Snf7 PF03357.21 gi|344210637|ref|YP_004794957.1| - 0.015 14.9 19.3 9.2 5.8 19.3 2.5 1 1 0 1 1 1 0 Snf7 Phage_GP20 PF06810.11 gi|344210637|ref|YP_004794957.1| - 0.025 14.4 1.2 0.025 14.4 1.2 3.0 1 1 2 3 3 3 0 Phage minor structural protein GP20 FTA4 PF13093.6 gi|344210637|ref|YP_004794957.1| - 0.031 14.1 13.7 0.064 13.1 4.5 2.5 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Filament PF00038.21 gi|344210637|ref|YP_004794957.1| - 0.05 13.2 23.0 2.3 7.7 1.2 3.0 1 1 1 2 2 2 0 Intermediate filament protein DUF1664 PF07889.12 gi|344210637|ref|YP_004794957.1| - 0.13 12.3 8.8 0.13 12.3 1.6 3.0 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 gi|344210637|ref|YP_004794957.1| - 0.14 11.4 8.9 0.068 12.4 1.8 2.2 1 1 1 2 2 2 0 TMPIT-like protein DUF4407 PF14362.6 gi|344210637|ref|YP_004794957.1| - 0.16 11.3 24.4 0.24 10.7 13.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Snapin_Pallidin PF14712.6 gi|344210637|ref|YP_004794957.1| - 0.28 11.6 10.4 0.11 12.9 1.7 3.4 2 1 1 3 3 3 0 Snapin/Pallidin Prominin PF05478.11 gi|344210637|ref|YP_004794957.1| - 0.43 8.5 4.6 0.51 8.2 4.6 1.1 1 0 0 1 1 1 0 Prominin DivIC PF04977.15 gi|344210637|ref|YP_004794957.1| - 0.52 10.1 23.4 0.51 10.1 0.9 4.4 2 1 3 5 5 5 0 Septum formation initiator Spc7 PF08317.11 gi|344210637|ref|YP_004794957.1| - 0.55 9.1 21.1 0.028 13.3 7.8 2.5 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF4615 PF15393.6 gi|344210637|ref|YP_004794957.1| - 0.88 10.1 6.0 0.38 11.3 3.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4615) FapA PF03961.13 gi|344210637|ref|YP_004794957.1| - 1.2 7.6 10.9 0.82 8.2 4.4 2.3 1 1 2 3 3 3 0 Flagellar Assembly Protein A DUF4391 PF14335.6 gi|344210637|ref|YP_004794957.1| - 1.4 8.6 7.6 0.84 9.3 0.6 2.7 1 1 1 3 3 3 0 Domain of unknown function (DUF4391) PolyA_pol PF01743.20 gi|344210637|ref|YP_004794957.1| - 1.6 9.2 13.7 0.14 12.6 3.2 3.3 1 1 3 4 4 4 0 Poly A polymerase head domain DUF5082 PF16888.5 gi|344210637|ref|YP_004794957.1| - 2.5 8.4 14.1 0.19 12.0 3.4 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) Herpes_UL6 PF01763.16 gi|344210637|ref|YP_004794957.1| - 3.3 6.1 7.7 4.5 5.7 7.7 1.4 1 1 0 1 1 1 0 Herpesvirus UL6 like Seryl_tRNA_N PF02403.22 gi|344210637|ref|YP_004794957.1| - 7 6.9 14.0 1.6e+02 2.6 11.7 3.5 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DHR10 PF18595.1 gi|344210637|ref|YP_004794957.1| - 8 6.5 30.4 1.3 9.1 3.1 3.4 2 1 0 3 3 3 0 Designed helical repeat protein 10 domain DHHA1 PF02272.19 gi|344210640|ref|YP_004794960.1| - 3.2e-20 72.9 0.5 6.7e-20 71.9 0.5 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|344210640|ref|YP_004794960.1| - 0.0087 16.3 0.2 0.015 15.5 0.2 1.4 1 0 0 1 1 1 1 DHH family Peptidase_C15 PF01470.17 gi|344210640|ref|YP_004794960.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Pyroglutamyl peptidase HTH_43 PF09904.9 gi|344210641|ref|YP_004794961.1| - 0.021 14.8 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix ABC_transp_aux PF09822.9 gi|344210643|ref|YP_004794963.1| - 1.8e-05 24.4 0.0 2.5e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|344210643|ref|YP_004794963.1| - 0.0024 18.2 3.0 0.011 16.2 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.18 gi|344210644|ref|YP_004794964.1| - 1.1e-18 67.6 2.3 4.7e-11 42.9 0.4 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|344210644|ref|YP_004794964.1| - 0.0003 20.7 0.1 0.0018 18.2 0.0 2.0 1 1 1 2 2 2 1 Clp protease SDH_sah PF01972.16 gi|344210644|ref|YP_004794964.1| - 0.00065 18.8 0.0 0.00093 18.3 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase RNA_pol_RpbG PF16992.5 gi|344210644|ref|YP_004794964.1| - 0.15 12.1 0.0 14 5.8 0.0 2.2 2 0 0 2 2 2 0 DNA-directed RNA polymerase, subunit G Chlor_dismutase PF06778.12 gi|344210645|ref|YP_004794965.1| - 1.7e-66 223.6 0.2 3e-66 222.7 0.2 1.5 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|344210645|ref|YP_004794965.1| - 2.5e-09 37.1 0.1 2.5e-09 37.1 0.1 3.0 3 0 0 3 3 3 1 Antibiotic biosynthesis monooxygenase DAPDH_C PF16654.5 gi|344210645|ref|YP_004794965.1| - 0.02 14.7 0.2 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Diaminopimelic acid dehydrogenase C-terminal domain Methyltransf_25 PF13649.6 gi|344210646|ref|YP_004794966.1| - 1e-21 77.4 0.1 1.9e-21 76.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210646|ref|YP_004794966.1| - 1.2e-19 70.7 0.1 2e-19 70.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210646|ref|YP_004794966.1| - 8.4e-18 64.7 0.0 1.4e-17 64.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210646|ref|YP_004794966.1| - 1.4e-17 63.9 0.0 1.8e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210646|ref|YP_004794966.1| - 2.6e-14 53.7 0.0 5.7e-14 52.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344210646|ref|YP_004794966.1| - 4.3e-09 36.4 0.0 6.9e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|344210646|ref|YP_004794966.1| - 6.3e-08 32.2 0.0 7.8e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|344210646|ref|YP_004794966.1| - 2.2e-07 30.6 0.0 3.2e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|344210646|ref|YP_004794966.1| - 5.4e-07 29.7 0.0 8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TPMT PF05724.11 gi|344210646|ref|YP_004794966.1| - 1.1e-06 28.5 0.0 6e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.20 gi|344210646|ref|YP_004794966.1| - 9.4e-05 21.6 0.0 0.00012 21.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Pox_MCEL PF03291.16 gi|344210646|ref|YP_004794966.1| - 0.00054 19.2 0.0 0.04 13.0 0.0 2.0 1 1 1 2 2 2 1 mRNA capping enzyme Ubie_methyltran PF01209.18 gi|344210646|ref|YP_004794966.1| - 0.0007 19.0 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|344210646|ref|YP_004794966.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|344210646|ref|YP_004794966.1| - 0.0019 17.5 0.1 0.0028 17.0 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 gi|344210646|ref|YP_004794966.1| - 0.0022 17.6 0.0 0.0031 17.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|344210646|ref|YP_004794966.1| - 0.0029 16.6 0.0 0.0071 15.3 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_18 PF12847.7 gi|344210646|ref|YP_004794966.1| - 0.0078 16.2 0.1 0.016 15.1 0.1 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|344210646|ref|YP_004794966.1| - 0.016 14.7 0.0 0.034 13.6 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase PrmA PF06325.13 gi|344210646|ref|YP_004794966.1| - 0.017 14.6 0.1 0.022 14.2 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|344210646|ref|YP_004794966.1| - 0.065 12.6 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB SnoaL_2 PF12680.7 gi|344210646|ref|YP_004794966.1| - 0.069 13.8 1.2 0.56 10.9 0.2 2.6 1 1 2 3 3 3 0 SnoaL-like domain FtsJ PF01728.19 gi|344210646|ref|YP_004794966.1| - 0.07 13.2 0.0 0.39 10.8 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase YugN PF08868.10 gi|344210646|ref|YP_004794966.1| - 0.075 12.9 0.0 0.74 9.7 0.0 2.2 2 1 0 2 2 2 0 YugN-like family CheR PF01739.18 gi|344210646|ref|YP_004794966.1| - 0.077 12.5 0.0 3.3 7.1 0.0 2.4 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Cons_hypoth95 PF03602.15 gi|344210646|ref|YP_004794966.1| - 0.093 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DREV PF05219.12 gi|344210646|ref|YP_004794966.1| - 0.098 11.7 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase NifU_N PF01592.16 gi|344210647|ref|YP_004794967.1| - 7.4e-29 100.5 0.1 8.4e-29 100.3 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain DSPc PF00782.20 gi|344210648|ref|YP_004794968.1| - 2.8e-11 43.4 0.0 4.7e-11 42.6 0.0 1.3 1 1 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|344210648|ref|YP_004794968.1| - 0.00018 21.2 0.0 0.00018 21.2 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|344210648|ref|YP_004794968.1| - 0.0027 17.4 0.0 0.0032 17.1 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.13 gi|344210648|ref|YP_004794968.1| - 0.056 13.5 0.1 0.086 12.9 0.1 1.4 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Cupin_2 PF07883.11 gi|344210649|ref|YP_004794969.1| - 9.5e-07 28.4 0.0 1.7e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Cupin domain ARD PF03079.14 gi|344210649|ref|YP_004794969.1| - 0.056 13.6 0.0 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 ARD/ARD' family Aminotran_5 PF00266.19 gi|344210650|ref|YP_004794970.1| - 1.5e-144 481.5 0.1 1.7e-144 481.4 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|344210650|ref|YP_004794970.1| - 1.3e-10 41.1 0.5 2.3e-10 40.4 0.5 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|344210650|ref|YP_004794970.1| - 4.2e-09 36.1 0.1 5.8e-09 35.6 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|344210650|ref|YP_004794970.1| - 6.3e-09 35.5 0.0 1.7e-08 34.0 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|344210650|ref|YP_004794970.1| - 0.00011 21.0 0.1 0.00041 19.2 0.1 1.7 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.13 gi|344210650|ref|YP_004794970.1| - 0.00022 20.4 0.0 0.00044 19.4 0.0 1.4 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|344210650|ref|YP_004794970.1| - 0.0046 15.5 0.0 0.008 14.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme UDPG_MGDP_dh_N PF03721.14 gi|344210651|ref|YP_004794971.1| - 4.8e-38 130.6 0.0 7.3e-38 130.0 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|344210651|ref|YP_004794971.1| - 5e-21 74.7 0.0 1.2e-20 73.5 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|344210651|ref|YP_004794971.1| - 5.5e-16 58.9 0.0 2.1e-15 57.0 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|344210651|ref|YP_004794971.1| - 0.00078 19.7 0.0 0.0025 18.0 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|344210651|ref|YP_004794971.1| - 0.0026 17.7 0.0 0.0072 16.3 0.0 1.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|344210651|ref|YP_004794971.1| - 0.024 14.9 0.4 0.74 10.1 0.0 3.1 3 0 0 3 3 3 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|344210652|ref|YP_004794972.1| - 2.5e-20 73.5 1.9 2.8e-20 73.3 0.3 1.9 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|344210652|ref|YP_004794972.1| - 1.8e-06 27.7 0.6 6.2e-06 25.9 0.4 2.0 1 1 1 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|344210652|ref|YP_004794972.1| - 4.2e-06 26.2 0.5 2.6e-05 23.7 0.2 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|344210652|ref|YP_004794972.1| - 7.6e-06 26.4 2.8 1.9e-05 25.2 0.2 2.4 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|344210652|ref|YP_004794972.1| - 0.00011 22.4 0.2 0.00029 21.0 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.19 gi|344210652|ref|YP_004794972.1| - 0.00017 22.2 2.2 0.017 15.8 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain Sacchrp_dh_NADP PF03435.18 gi|344210652|ref|YP_004794972.1| - 0.012 15.9 1.0 0.068 13.4 1.0 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain LdpA_C PF12617.8 gi|344210652|ref|YP_004794972.1| - 0.038 13.6 0.1 0.098 12.3 0.0 1.7 1 1 0 1 1 1 0 Iron-Sulfur binding protein C terminal Semialdhyde_dh PF01118.24 gi|344210652|ref|YP_004794972.1| - 0.093 13.2 0.1 0.3 11.5 0.1 1.9 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|344210652|ref|YP_004794972.1| - 0.19 11.9 1.3 0.48 10.5 0.4 2.2 1 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus DegT_DnrJ_EryC1 PF01041.17 gi|344210653|ref|YP_004794973.1| - 3.9e-119 398.2 0.2 4.4e-119 398.0 0.2 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|344210653|ref|YP_004794973.1| - 6.3e-10 38.8 0.1 1e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|344210653|ref|YP_004794973.1| - 0.013 14.5 0.1 0.02 13.9 0.1 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Hexapep PF00132.24 gi|344210654|ref|YP_004794974.1| - 2.1e-24 84.3 7.6 4.8e-09 35.6 0.5 5.0 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344210654|ref|YP_004794974.1| - 9.9e-17 60.4 4.6 8.3e-06 25.4 0.2 4.4 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase Acetyltransf_6 PF13480.7 gi|344210655|ref|YP_004794975.1| - 3.9e-18 66.0 0.1 2.3e-17 63.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain UBX PF00789.20 gi|344210655|ref|YP_004794975.1| - 0.051 13.8 0.0 5.4 7.3 0.0 2.3 1 1 0 2 2 2 0 UBX domain Acetyltransf_6 PF13480.7 gi|344210656|ref|YP_004794976.1| - 2.8e-13 50.2 1.5 5.1e-13 49.4 1.5 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB_like PF04339.12 gi|344210656|ref|YP_004794976.1| - 2.1e-08 33.7 0.1 3.9e-05 23.0 0.1 2.2 2 0 0 2 2 2 2 Peptidogalycan biosysnthesis/recognition FemAB PF02388.16 gi|344210656|ref|YP_004794976.1| - 0.00072 18.5 0.0 0.0015 17.5 0.1 1.4 2 0 0 2 2 2 1 FemAB family DUF1442 PF07279.11 gi|344210656|ref|YP_004794976.1| - 0.041 13.2 0.0 0.076 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) Glyco_trans_1_4 PF13692.6 gi|344210657|ref|YP_004794977.1| - 8.1e-11 42.5 0.3 2.6e-10 40.9 0.3 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|344210657|ref|YP_004794977.1| - 1.5e-09 37.6 0.1 2.2e-09 37.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|344210657|ref|YP_004794977.1| - 8.2e-08 32.8 0.8 8.2e-08 32.8 0.8 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|344210657|ref|YP_004794977.1| - 1.8e-06 28.1 0.1 1e-05 25.6 0.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|344210657|ref|YP_004794977.1| - 0.0082 16.2 0.0 0.028 14.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|344210658|ref|YP_004794978.1| - 9.5e-18 64.6 0.0 1.5e-17 63.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Rab5ip PF07019.12 gi|344210658|ref|YP_004794978.1| - 0.065 13.8 1.5 0.11 13.1 1.5 1.3 1 0 0 1 1 1 0 Rab5-interacting protein (Rab5ip) Beta_helix PF13229.6 gi|344210660|ref|YP_004794980.1| - 2.5e-09 37.2 0.2 7.2e-09 35.7 0.2 1.9 1 1 0 1 1 1 1 Right handed beta helix region Beta_helix PF13229.6 gi|344210661|ref|YP_004794981.1| - 1e-07 31.9 0.8 0.012 15.4 0.8 2.7 1 1 1 2 2 2 2 Right handed beta helix region DUF4957 PF16318.5 gi|344210661|ref|YP_004794981.1| - 0.012 15.6 0.0 1.9 8.4 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4957) Big_6 PF17936.1 gi|344210661|ref|YP_004794981.1| - 0.039 14.2 0.3 0.14 12.4 0.3 1.9 1 0 0 1 1 1 0 Bacterial Ig domain UPF0254 PF06787.11 gi|344210661|ref|YP_004794981.1| - 0.088 12.6 0.2 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) TAT_signal PF10518.9 gi|344210661|ref|YP_004794981.1| - 0.093 12.6 0.0 0.26 11.2 0.0 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glycos_transf_1 PF00534.20 gi|344210662|ref|YP_004794982.1| - 2.9e-20 72.5 0.0 4.3e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210662|ref|YP_004794982.1| - 1e-18 68.1 0.0 2.2e-18 67.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|344210662|ref|YP_004794982.1| - 2.4e-09 37.5 0.0 4.7e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210662|ref|YP_004794982.1| - 1.2e-07 31.9 0.1 1.1e-06 28.8 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210662|ref|YP_004794982.1| - 0.0013 19.2 3.4 0.0015 19.0 1.8 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Polysacc_synt_C PF14667.6 gi|344210663|ref|YP_004794983.1| - 7.9e-21 74.6 13.0 7.9e-21 74.6 13.0 3.1 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|344210663|ref|YP_004794983.1| - 4.5e-18 65.5 4.0 4.5e-18 65.5 4.0 1.7 2 1 0 3 3 3 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|344210663|ref|YP_004794983.1| - 1.8e-14 53.2 14.3 2.9e-14 52.6 14.3 1.3 1 1 0 1 1 1 1 Lipid II flippase MurJ Polysacc_synt PF01943.17 gi|344210663|ref|YP_004794983.1| - 6.8e-07 28.9 8.6 6.8e-07 28.9 8.6 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein DUF354 PF04007.12 gi|344210664|ref|YP_004794984.1| - 6.6e-10 38.6 0.0 1e-09 37.9 0.0 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_2 PF13477.6 gi|344210664|ref|YP_004794984.1| - 0.00038 20.5 0.0 0.00063 19.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF1616 PF07760.11 gi|344210665|ref|YP_004794985.1| - 1.8e-17 63.7 0.2 2.7e-17 63.1 0.2 1.2 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) YdjM PF04307.14 gi|344210667|ref|YP_004794987.1| - 0.35 10.1 9.4 4.1 6.7 9.4 2.1 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase DUF424 PF04242.13 gi|344210668|ref|YP_004794988.1| - 7.1e-31 106.3 0.0 7.8e-31 106.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.28 gi|344210669|ref|YP_004794989.1| - 3.4e-23 80.4 5.4 5.7e-06 25.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|344210669|ref|YP_004794989.1| - 9.6e-21 72.2 13.0 3.1e-05 23.8 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|344210669|ref|YP_004794989.1| - 4.7e-17 62.3 18.0 3.7e-09 37.1 2.0 3.3 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|344210669|ref|YP_004794989.1| - 3.6e-16 58.0 2.5 0.00039 20.4 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|344210669|ref|YP_004794989.1| - 6.5e-14 52.0 15.0 9.3e-10 38.7 3.9 3.7 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|344210669|ref|YP_004794989.1| - 2.5e-11 43.1 3.0 0.0029 17.3 0.0 4.5 1 1 3 4 4 4 2 TPR repeat TPR_14 PF13428.6 gi|344210669|ref|YP_004794989.1| - 6.1e-11 42.2 20.6 0.00099 19.7 0.1 5.2 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.6 gi|344210669|ref|YP_004794989.1| - 3e-10 39.7 0.3 0.00082 19.6 0.0 4.4 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|344210669|ref|YP_004794989.1| - 2.7e-09 37.0 8.4 0.00042 20.4 0.4 3.6 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_7 PF13176.6 gi|344210669|ref|YP_004794989.1| - 1.2e-08 34.4 13.0 0.0096 15.9 0.2 4.6 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_19 PF14559.6 gi|344210669|ref|YP_004794989.1| - 6.9e-08 32.9 11.9 0.00092 19.7 0.0 3.6 1 1 2 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|344210669|ref|YP_004794989.1| - 2.4e-06 27.8 5.9 3.6 8.4 0.0 5.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.6 gi|344210669|ref|YP_004794989.1| - 7.6e-05 22.5 19.1 0.0053 16.6 0.3 4.6 5 0 0 5 5 5 2 Tetratricopeptide repeat DUF4192 PF13830.6 gi|344210669|ref|YP_004794989.1| - 0.0012 19.0 2.9 0.0012 19.0 2.9 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4192) TPR_4 PF07721.14 gi|344210669|ref|YP_004794989.1| - 0.0015 18.9 0.5 0.0015 18.9 0.5 5.1 6 0 0 6 6 5 2 Tetratricopeptide repeat YfiO PF13525.6 gi|344210669|ref|YP_004794989.1| - 0.035 13.8 0.7 0.069 12.9 0.3 1.6 1 1 0 1 1 1 0 Outer membrane lipoprotein ANAPC5 PF12862.7 gi|344210669|ref|YP_004794989.1| - 0.051 13.6 1.7 23 5.1 1.4 3.1 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 DUF3856 PF12968.7 gi|344210669|ref|YP_004794989.1| - 0.095 12.8 9.8 1.5 8.9 1.7 3.6 1 1 2 3 3 3 0 Domain of Unknown Function (DUF3856) TPR_20 PF14561.6 gi|344210669|ref|YP_004794989.1| - 0.26 11.6 9.8 2.1 8.7 0.2 3.0 2 2 1 3 3 3 0 Tetratricopeptide repeat SMBP PF16785.5 gi|344210669|ref|YP_004794989.1| - 3.4 7.9 8.8 2.6 8.3 1.8 2.9 2 1 1 3 3 3 0 Small metal-binding protein LigT_PEase PF02834.16 gi|344210670|ref|YP_004794990.1| - 3.8e-23 81.5 0.0 5.2e-13 49.0 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|344210670|ref|YP_004794990.1| - 1.8e-17 63.6 0.0 2.2e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|344210670|ref|YP_004794990.1| - 6.4e-08 32.7 0.0 7.4e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|344210670|ref|YP_004794990.1| - 0.029 13.8 0.0 0.036 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein Zip PF02535.22 gi|344210671|ref|YP_004794991.1| - 1.2e-12 47.7 21.0 6.3e-10 38.8 5.4 3.1 3 0 0 3 3 3 3 ZIP Zinc transporter Ribosomal_L39 PF00832.20 gi|344210673|ref|YP_004794993.1| - 4e-20 71.2 7.4 4.7e-20 70.9 7.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|344210674|ref|YP_004794994.1| - 1.3e-09 38.2 0.2 1.5e-09 37.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Tom37_C PF11801.8 gi|344210674|ref|YP_004794994.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Tom37 C-terminal domain eIF-6 PF01912.18 gi|344210675|ref|YP_004794995.1| - 4.2e-68 228.6 0.0 4.7e-68 228.5 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Nudix_N_2 PF14803.6 gi|344210676|ref|YP_004794996.1| - 3.7e-05 23.6 2.4 0.0052 16.7 0.2 2.1 2 0 0 2 2 2 2 Nudix N-terminal DUF1272 PF06906.11 gi|344210676|ref|YP_004794996.1| - 0.00099 19.1 1.0 0.0013 18.7 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.10 gi|344210676|ref|YP_004794996.1| - 0.0016 18.1 0.3 0.87 9.4 0.1 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain zf-RING_10 PF16685.5 gi|344210676|ref|YP_004794996.1| - 0.002 18.2 0.2 0.002 18.2 0.2 1.0 1 0 0 1 1 1 1 zinc RING finger of MSL2 RNA_POL_M_15KD PF02150.16 gi|344210676|ref|YP_004794996.1| - 0.002 17.9 1.3 0.24 11.3 0.2 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.12 gi|344210676|ref|YP_004794996.1| - 0.0048 16.8 0.9 0.21 11.5 0.1 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon HypA PF01155.19 gi|344210676|ref|YP_004794996.1| - 0.01 15.8 0.5 0.011 15.8 0.5 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_Rg PF17915.1 gi|344210676|ref|YP_004794996.1| - 0.016 14.6 1.3 0.032 13.6 0.1 1.9 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-C4_Topoisom PF01396.19 gi|344210676|ref|YP_004794996.1| - 0.017 14.9 0.3 0.017 14.9 0.3 1.9 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rubredoxin_2 PF18073.1 gi|344210676|ref|YP_004794996.1| - 0.023 14.4 2.4 0.033 13.9 2.4 1.2 1 0 0 1 1 1 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|344210676|ref|YP_004794996.1| - 0.032 13.7 1.6 0.53 9.8 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding PriA_CRR PF18319.1 gi|344210676|ref|YP_004794996.1| - 0.032 14.2 0.8 0.53 10.3 0.1 2.1 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zf-IS66 PF13005.7 gi|344210676|ref|YP_004794996.1| - 0.034 14.6 2.3 0.32 11.4 0.2 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.7 gi|344210676|ref|YP_004794996.1| - 0.044 13.8 2.4 1.4 8.9 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|344210676|ref|YP_004794996.1| - 0.087 12.6 1.0 0.35 10.6 1.0 1.8 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF35_N PF12172.8 gi|344210676|ref|YP_004794996.1| - 0.087 12.7 4.7 0.16 11.9 4.7 1.5 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2H2_3 PF13878.6 gi|344210676|ref|YP_004794996.1| - 0.13 12.2 0.2 0.13 12.2 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO NRDD PF13597.6 gi|344210676|ref|YP_004794996.1| - 0.17 10.6 0.8 0.18 10.5 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|344210676|ref|YP_004794996.1| - 0.19 11.9 3.7 0.44 10.7 3.7 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|344210676|ref|YP_004794996.1| - 0.4 11.0 4.5 7.6 6.9 4.5 2.1 1 1 0 1 1 1 0 zinc-ribbon Anti-TRAP PF15777.5 gi|344210676|ref|YP_004794996.1| - 0.46 10.5 3.4 1.6 8.8 3.4 1.8 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Ribosomal_S27 PF01599.19 gi|344210676|ref|YP_004794996.1| - 0.51 10.5 4.4 5.6 7.2 0.6 2.1 1 1 1 2 2 2 0 Ribosomal protein S27a Ribosomal_L18A PF01775.17 gi|344210677|ref|YP_004794997.1| - 5.2e-13 49.1 0.0 5.7e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|344210678|ref|YP_004794998.1| - 1.7e-23 82.8 6.3 1.7e-23 82.8 6.3 1.6 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|344210678|ref|YP_004794998.1| - 4.7e-08 32.9 24.6 1.2e-05 25.1 9.8 2.6 1 1 2 3 3 3 2 Prefoldin subunit APG6_N PF17675.1 gi|344210678|ref|YP_004794998.1| - 1.4e-05 25.6 24.6 0.0013 19.3 12.3 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region DUF5082 PF16888.5 gi|344210678|ref|YP_004794998.1| - 0.00014 22.1 19.4 0.0011 19.2 2.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF5082) GAS PF13851.6 gi|344210678|ref|YP_004794998.1| - 0.00073 18.9 13.4 0.15 11.4 0.2 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DivIC PF04977.15 gi|344210678|ref|YP_004794998.1| - 0.0012 18.5 0.2 0.0012 18.5 0.2 3.1 2 1 1 3 3 2 1 Septum formation initiator Uds1 PF15456.6 gi|344210678|ref|YP_004794998.1| - 0.0026 17.9 5.8 0.0054 16.9 5.7 1.5 1 1 0 1 1 1 1 Up-regulated During Septation FliD_C PF07195.12 gi|344210678|ref|YP_004794998.1| - 0.0032 16.9 9.3 0.0086 15.5 4.1 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Syntaxin PF00804.25 gi|344210678|ref|YP_004794998.1| - 0.0044 16.7 12.3 0.1 12.2 0.9 2.1 2 0 0 2 2 2 2 Syntaxin DUF4795 PF16043.5 gi|344210678|ref|YP_004794998.1| - 0.0054 16.4 13.2 0.26 10.9 0.3 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4795) XhlA PF10779.9 gi|344210678|ref|YP_004794998.1| - 0.0079 16.4 16.5 0.097 12.9 4.0 2.4 2 0 0 2 2 2 2 Haemolysin XhlA ZapB PF06005.12 gi|344210678|ref|YP_004794998.1| - 0.0097 16.3 27.8 0.23 11.9 18.3 2.3 2 0 0 2 2 2 2 Cell division protein ZapB DUF4618 PF15397.6 gi|344210678|ref|YP_004794998.1| - 0.011 15.2 21.9 0.13 11.6 1.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) BLOC1_2 PF10046.9 gi|344210678|ref|YP_004794998.1| - 0.014 15.7 1.6 0.014 15.7 1.6 2.6 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sipho_Gp157 PF05565.11 gi|344210678|ref|YP_004794998.1| - 0.015 15.4 1.1 0.015 15.4 1.1 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 DUF4988 PF16378.5 gi|344210678|ref|YP_004794998.1| - 0.017 14.8 4.3 0.2 11.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function Laminin_II PF06009.12 gi|344210678|ref|YP_004794998.1| - 0.018 15.0 8.8 0.83 9.7 2.3 2.2 2 0 0 2 2 2 0 Laminin Domain II Seryl_tRNA_N PF02403.22 gi|344210678|ref|YP_004794998.1| - 0.019 15.2 12.7 0.62 10.3 1.4 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Golgin_A5 PF09787.9 gi|344210678|ref|YP_004794998.1| - 0.024 14.1 19.0 0.75 9.2 0.2 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 NPV_P10 PF05531.12 gi|344210678|ref|YP_004794998.1| - 0.028 14.9 20.0 0.77 10.3 6.5 2.8 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein YlqD PF11068.8 gi|344210678|ref|YP_004794998.1| - 0.032 14.6 23.5 0.71 10.2 1.7 2.3 2 0 0 2 2 2 0 YlqD protein DUF3450 PF11932.8 gi|344210678|ref|YP_004794998.1| - 0.033 13.5 20.5 0.24 10.7 11.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|344210678|ref|YP_004794998.1| - 0.034 14.2 22.6 0.21 11.6 1.0 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF932 PF06067.11 gi|344210678|ref|YP_004794998.1| - 0.038 13.8 7.3 0.32 10.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF932) GPS2_interact PF15784.5 gi|344210678|ref|YP_004794998.1| - 0.042 14.3 18.2 0.12 12.9 7.0 2.1 2 0 0 2 2 2 0 G-protein pathway suppressor 2-interacting domain Jnk-SapK_ap_N PF09744.9 gi|344210678|ref|YP_004794998.1| - 0.045 14.0 19.3 0.23 11.7 11.3 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|344210678|ref|YP_004794998.1| - 0.049 13.7 14.9 0.12 12.5 7.8 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Tektin PF03148.14 gi|344210678|ref|YP_004794998.1| - 0.053 12.3 17.9 0.11 11.2 1.6 2.2 2 0 0 2 2 2 0 Tektin family DUF812 PF05667.11 gi|344210678|ref|YP_004794998.1| - 0.058 12.3 21.4 0.35 9.7 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Spc7 PF08317.11 gi|344210678|ref|YP_004794998.1| - 0.06 12.2 22.2 0.19 10.6 1.7 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein SlyX PF04102.12 gi|344210678|ref|YP_004794998.1| - 0.076 13.6 26.8 4.4 8.0 17.2 3.1 3 0 0 3 3 3 0 SlyX MscS_porin PF12795.7 gi|344210678|ref|YP_004794998.1| - 0.079 12.5 0.5 0.079 12.5 0.5 2.0 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain COG2 PF06148.11 gi|344210678|ref|YP_004794998.1| - 0.079 13.0 10.0 0.76 9.9 0.5 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Plk4_PB2 PF18409.1 gi|344210678|ref|YP_004794998.1| - 0.1 13.3 3.3 9.6 6.9 1.8 2.1 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 Tropomyosin_1 PF12718.7 gi|344210678|ref|YP_004794998.1| - 0.1 12.7 26.4 0.073 13.2 1.7 2.1 2 0 0 2 2 2 0 Tropomyosin like HemX PF04375.14 gi|344210678|ref|YP_004794998.1| - 0.11 11.8 17.1 1 8.6 0.1 2.0 2 0 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Spc24 PF08286.11 gi|344210678|ref|YP_004794998.1| - 0.11 12.7 19.0 0.49 10.7 0.2 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Nsp1_C PF05064.13 gi|344210678|ref|YP_004794998.1| - 0.11 12.3 21.0 0.074 12.9 1.6 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Phage_GP20 PF06810.11 gi|344210678|ref|YP_004794998.1| - 0.11 12.3 18.9 0.2 11.4 2.0 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 CLZ PF16526.5 gi|344210678|ref|YP_004794998.1| - 0.12 12.8 16.1 2.2 8.7 0.3 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Fib_alpha PF08702.10 gi|344210678|ref|YP_004794998.1| - 0.12 12.5 12.7 1.4 9.1 0.7 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|344210678|ref|YP_004794998.1| - 0.13 12.4 19.7 0.31 11.1 10.7 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Wtap PF17098.5 gi|344210678|ref|YP_004794998.1| - 0.13 12.2 14.9 0.62 10.0 8.0 2.3 2 0 0 2 2 2 0 WTAP/Mum2p family Sec34 PF04136.15 gi|344210678|ref|YP_004794998.1| - 0.13 12.2 15.2 0.59 10.0 0.5 2.1 2 0 0 2 2 2 0 Sec34-like family Ax_dynein_light PF10211.9 gi|344210678|ref|YP_004794998.1| - 0.15 12.0 23.8 0.72 9.8 14.9 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Flagellar_rod PF05149.12 gi|344210678|ref|YP_004794998.1| - 0.15 11.5 17.1 0.062 12.8 9.0 2.1 2 0 0 2 2 2 0 Paraflagellar rod protein FlaC_arch PF05377.11 gi|344210678|ref|YP_004794998.1| - 0.17 12.3 21.0 0.15 12.5 3.8 3.4 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF3251 PF11622.8 gi|344210678|ref|YP_004794998.1| - 0.18 11.5 9.0 8.4 6.0 7.8 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3251) RPW8 PF05659.11 gi|344210678|ref|YP_004794998.1| - 0.18 11.5 5.8 0.23 11.1 0.2 2.4 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 bZIP_1 PF00170.21 gi|344210678|ref|YP_004794998.1| - 0.19 11.8 13.0 0.36 11.0 0.5 2.6 2 1 0 2 2 2 0 bZIP transcription factor DUF2570 PF10828.8 gi|344210678|ref|YP_004794998.1| - 0.22 11.3 19.5 0.25 11.2 10.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) Phage_GPO PF05929.11 gi|344210678|ref|YP_004794998.1| - 0.23 11.1 10.6 4.8 6.7 6.7 2.1 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Sec66 PF09802.9 gi|344210678|ref|YP_004794998.1| - 0.24 11.0 8.3 0.36 10.4 3.6 2.1 2 0 0 2 2 2 0 Preprotein translocase subunit Sec66 BshC PF10079.9 gi|344210678|ref|YP_004794998.1| - 0.29 9.8 11.2 0.32 9.7 5.4 2.0 2 0 0 2 2 2 0 Bacillithiol biosynthesis BshC EMP24_GP25L PF01105.24 gi|344210678|ref|YP_004794998.1| - 0.3 11.0 13.5 1.6 8.6 1.2 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD YabA PF06156.13 gi|344210678|ref|YP_004794998.1| - 0.31 11.7 18.7 1.4 9.6 0.6 2.1 2 0 0 2 2 2 0 Initiation control protein YabA FapA PF03961.13 gi|344210678|ref|YP_004794998.1| - 0.33 9.5 14.3 1.1 7.8 6.4 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF2968 PF11180.8 gi|344210678|ref|YP_004794998.1| - 0.33 10.6 20.7 0.88 9.2 10.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF3086 PF11285.8 gi|344210678|ref|YP_004794998.1| - 0.48 9.5 10.4 2.8 7.0 5.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Prominin PF05478.11 gi|344210678|ref|YP_004794998.1| - 0.6 8.0 7.3 4.4 5.1 3.8 2.0 2 0 0 2 2 2 0 Prominin DUF2203 PF09969.9 gi|344210678|ref|YP_004794998.1| - 0.68 10.7 10.8 6.8 7.4 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Baculo_PEP_C PF04513.12 gi|344210678|ref|YP_004794998.1| - 0.71 9.9 11.6 0.54 10.3 0.8 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|344210678|ref|YP_004794998.1| - 0.74 9.9 17.7 0.15 12.1 1.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|344210678|ref|YP_004794998.1| - 0.9 8.8 16.0 2 7.7 16.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) SAS4 PF15460.6 gi|344210678|ref|YP_004794998.1| - 1 9.5 13.7 1.7 8.8 6.6 2.4 2 0 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 DELLA PF12041.8 gi|344210678|ref|YP_004794998.1| - 1.3 8.9 10.6 0.29 11.0 0.4 2.5 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal DUF948 PF06103.11 gi|344210678|ref|YP_004794998.1| - 1.4 9.3 11.6 0.25 11.6 0.6 2.5 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) OmpH PF03938.14 gi|344210678|ref|YP_004794998.1| - 1.4 9.2 32.5 3 8.2 2.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) RmuC PF02646.16 gi|344210678|ref|YP_004794998.1| - 1.4 7.9 16.5 3.4 6.7 0.3 2.1 2 0 0 2 2 2 0 RmuC family TMF_DNA_bd PF12329.8 gi|344210678|ref|YP_004794998.1| - 1.6 8.8 20.3 0.12 12.3 7.0 2.8 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF4337 PF14235.6 gi|344210678|ref|YP_004794998.1| - 1.7 8.8 16.9 0.94 9.6 9.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF4446 PF14584.6 gi|344210678|ref|YP_004794998.1| - 1.7 8.6 11.9 4.9 7.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) DUF4140 PF13600.6 gi|344210678|ref|YP_004794998.1| - 1.7 9.1 20.0 0.86 10.1 4.0 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) AAA_13 PF13166.6 gi|344210678|ref|YP_004794998.1| - 1.8 7.1 17.8 10 4.6 17.8 1.8 1 1 0 1 1 1 0 AAA domain TMPIT PF07851.13 gi|344210678|ref|YP_004794998.1| - 1.8 7.8 11.5 5.4 6.2 0.0 2.0 2 0 0 2 2 2 0 TMPIT-like protein Fzo_mitofusin PF04799.13 gi|344210678|ref|YP_004794998.1| - 1.8 8.1 12.6 0.98 9.0 0.5 2.2 2 0 0 2 2 2 0 fzo-like conserved region bZIP_Maf PF03131.17 gi|344210678|ref|YP_004794998.1| - 1.9 9.1 18.2 2.9 8.5 1.2 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor PRKG1_interact PF15898.5 gi|344210678|ref|YP_004794998.1| - 2.1 9.3 18.2 12 6.8 0.3 2.2 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain ABC_tran_CTD PF16326.5 gi|344210678|ref|YP_004794998.1| - 2.2 8.6 30.7 6.7 7.0 14.7 2.9 2 1 0 2 2 2 0 ABC transporter C-terminal domain ERM PF00769.19 gi|344210678|ref|YP_004794998.1| - 2.3 7.9 28.3 0.97 9.2 1.1 2.0 2 0 0 2 2 2 0 Ezrin/radixin/moesin family DUF724 PF05266.14 gi|344210678|ref|YP_004794998.1| - 2.4 7.9 20.6 5.4 6.8 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) AAA_lid_9 PF17871.1 gi|344210678|ref|YP_004794998.1| - 2.6 8.0 16.4 4.8 7.2 8.0 2.3 2 0 0 2 2 2 0 AAA lid domain DUF2730 PF10805.8 gi|344210678|ref|YP_004794998.1| - 2.9 8.0 12.0 9.7 6.3 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) LMBR1 PF04791.16 gi|344210678|ref|YP_004794998.1| - 2.9 6.7 6.1 3.5 6.4 6.1 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein BRI3BP PF14965.6 gi|344210678|ref|YP_004794998.1| - 3.3 7.2 4.3 41 3.6 0.1 2.7 2 1 1 3 3 3 0 Negative regulator of p53/TP53 Cob_adeno_trans PF01923.18 gi|344210678|ref|YP_004794998.1| - 3.3 7.8 10.3 11 6.1 3.9 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase HR1 PF02185.16 gi|344210678|ref|YP_004794998.1| - 3.3 7.9 21.2 1.1 9.4 1.3 2.3 2 0 0 2 2 2 0 Hr1 repeat Helo_like_N PF17111.5 gi|344210678|ref|YP_004794998.1| - 4.3 6.6 13.4 2.4 7.5 6.3 2.1 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins Nup54 PF13874.6 gi|344210678|ref|YP_004794998.1| - 5.1 7.2 21.0 6.2 6.9 1.4 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DHR10 PF18595.1 gi|344210678|ref|YP_004794998.1| - 7.3 6.7 29.3 2.6 8.1 3.9 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain TSC22 PF01166.18 gi|344210678|ref|YP_004794998.1| - 7.6 6.9 17.6 5.3 7.4 8.3 2.6 2 1 0 2 2 2 0 TSC-22/dip/bun family Allexi_40kDa PF05549.11 gi|344210678|ref|YP_004794998.1| - 7.6 6.0 9.6 6.6 6.2 3.3 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein zf-CpG_bind_C PF12269.8 gi|344210678|ref|YP_004794998.1| - 8.1 6.2 12.5 7.6 6.2 0.3 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain LCIB_C_CA PF18599.1 gi|344210678|ref|YP_004794998.1| - 8.9 5.5 11.0 1.6 8.0 5.4 1.9 2 0 0 2 2 2 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases DASH_Dam1 PF08653.10 gi|344210678|ref|YP_004794998.1| - 9.8 6.1 10.9 33 4.4 0.5 3.5 2 2 1 3 3 3 0 DASH complex subunit Dam1 Med4 PF10018.9 gi|344210678|ref|YP_004794998.1| - 9.9 5.8 17.8 2 8.1 1.2 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 SRP54 PF00448.22 gi|344210679|ref|YP_004794999.1| - 4.3e-68 228.8 0.2 6.1e-68 228.3 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|344210679|ref|YP_004794999.1| - 1.1e-10 41.5 0.9 1.1e-10 41.5 0.9 2.2 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.12 gi|344210679|ref|YP_004794999.1| - 1.9e-05 24.0 0.1 3.2e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_17 PF13207.6 gi|344210679|ref|YP_004794999.1| - 2e-05 25.1 0.1 6.1e-05 23.5 0.1 1.9 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|344210679|ref|YP_004794999.1| - 2.6e-05 24.2 0.0 5.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.6 gi|344210679|ref|YP_004794999.1| - 0.00014 21.6 0.8 0.00035 20.3 0.8 1.7 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344210679|ref|YP_004794999.1| - 0.00029 20.9 0.0 0.00065 19.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 gi|344210679|ref|YP_004794999.1| - 0.0003 21.1 0.6 0.0019 18.5 0.2 2.5 2 1 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|344210679|ref|YP_004794999.1| - 0.00036 20.2 0.1 0.0054 16.4 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase KTI12 PF08433.10 gi|344210679|ref|YP_004794999.1| - 0.0009 18.8 0.0 0.0016 17.9 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|344210679|ref|YP_004794999.1| - 0.0016 18.9 0.1 0.0016 18.9 0.1 2.6 2 2 0 2 2 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|344210679|ref|YP_004794999.1| - 0.0026 18.0 0.1 0.017 15.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|344210679|ref|YP_004794999.1| - 0.0084 16.4 0.0 0.021 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|344210679|ref|YP_004794999.1| - 0.0096 15.5 1.7 0.012 15.2 0.1 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|344210679|ref|YP_004794999.1| - 0.015 15.7 0.1 0.027 14.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|344210679|ref|YP_004794999.1| - 0.018 14.9 0.1 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.6 gi|344210679|ref|YP_004794999.1| - 0.019 14.7 0.2 0.054 13.2 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain MeaB PF03308.16 gi|344210679|ref|YP_004794999.1| - 0.021 13.8 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|344210679|ref|YP_004794999.1| - 0.027 14.5 0.1 0.097 12.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|344210679|ref|YP_004794999.1| - 0.044 13.5 0.2 0.089 12.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|344210679|ref|YP_004794999.1| - 0.056 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein 6PF2K PF01591.18 gi|344210679|ref|YP_004794999.1| - 0.063 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_31 PF13614.6 gi|344210679|ref|YP_004794999.1| - 0.081 12.8 0.5 0.31 10.9 0.1 2.1 3 0 0 3 3 2 0 AAA domain PRCC PF10253.9 gi|344210679|ref|YP_004794999.1| - 0.1 13.4 11.7 0.2 12.4 11.7 1.4 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting PPK2 PF03976.14 gi|344210679|ref|YP_004794999.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.6 gi|344210679|ref|YP_004794999.1| - 0.12 12.9 0.3 0.36 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|344210679|ref|YP_004794999.1| - 0.13 12.2 0.2 0.46 10.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Aconitase_C PF00694.19 gi|344210681|ref|YP_004795001.1| - 0.028 14.8 0.2 0.036 14.4 0.2 1.2 1 0 0 1 1 1 0 Aconitase C-terminal domain Aldolase PF01081.19 gi|344210683|ref|YP_004795003.1| - 3.8e-41 140.7 2.7 4.3e-41 140.5 2.7 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|344210683|ref|YP_004795003.1| - 0.00012 21.4 7.0 0.13 11.4 0.1 3.1 1 1 1 3 3 3 3 Dihydroorotate dehydrogenase PEP_hydrolase PF09370.10 gi|344210683|ref|YP_004795003.1| - 0.0023 17.2 1.8 0.25 10.5 0.1 2.2 1 1 0 2 2 2 2 Phosphoenolpyruvate hydrolase-like TMP-TENI PF02581.17 gi|344210683|ref|YP_004795003.1| - 0.053 12.9 3.3 0.69 9.2 0.1 3.0 2 2 2 4 4 4 0 Thiamine monophosphate synthase IMPDH PF00478.25 gi|344210683|ref|YP_004795003.1| - 0.42 9.6 7.4 0.073 12.0 1.6 2.4 2 1 1 3 3 3 0 IMP dehydrogenase / GMP reductase domain Cupin_2 PF07883.11 gi|344210684|ref|YP_004795004.1| - 7.4e-14 51.2 1.1 9.7e-14 50.8 1.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|344210684|ref|YP_004795004.1| - 3.7e-05 23.7 0.1 5.5e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|344210684|ref|YP_004795004.1| - 0.0026 17.7 0.0 0.0031 17.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF2600 PF10776.9 gi|344210684|ref|YP_004795004.1| - 0.026 13.4 0.2 0.034 13.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2600) AraC_binding_2 PF14525.6 gi|344210684|ref|YP_004795004.1| - 0.027 14.2 0.0 0.047 13.4 0.0 1.3 1 1 0 1 1 1 0 AraC-binding-like domain Cupin_3 PF05899.12 gi|344210684|ref|YP_004795004.1| - 0.055 13.2 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|344210684|ref|YP_004795004.1| - 0.082 12.5 0.0 0.098 12.3 0.0 1.2 1 0 0 1 1 1 0 Cupin Mem_trans PF03547.18 gi|344210685|ref|YP_004795005.1| - 6.9e-19 67.5 14.2 8.6e-13 47.4 0.4 2.0 1 1 1 2 2 2 2 Membrane transport protein SBF PF01758.16 gi|344210685|ref|YP_004795005.1| - 0.39 10.4 14.4 0.023 14.4 7.2 2.4 2 0 0 2 2 2 0 Sodium Bile acid symporter family SRP54 PF00448.22 gi|344210686|ref|YP_004795006.1| - 1.3e-59 201.2 0.1 2e-59 200.6 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|344210686|ref|YP_004795006.1| - 1.1e-29 103.0 4.8 1.1e-29 103.0 4.8 3.2 4 0 0 4 4 4 1 Signal peptide binding domain SRP54_N PF02881.19 gi|344210686|ref|YP_004795006.1| - 3e-17 62.6 2.6 6.6e-17 61.5 0.1 2.8 3 0 0 3 3 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|344210686|ref|YP_004795006.1| - 2.5e-05 24.3 0.0 8.1e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|344210686|ref|YP_004795006.1| - 0.0072 15.5 6.7 0.11 11.6 0.0 3.2 2 1 0 3 3 3 1 Anion-transporting ATPase cobW PF02492.19 gi|344210686|ref|YP_004795006.1| - 0.0082 15.7 0.3 0.21 11.2 0.3 2.5 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|344210686|ref|YP_004795006.1| - 0.013 14.7 0.1 1.7 7.9 0.0 2.7 3 0 0 3 3 3 0 Zeta toxin AAA_22 PF13401.6 gi|344210686|ref|YP_004795006.1| - 0.025 14.8 0.1 0.14 12.5 0.0 2.3 3 0 0 3 3 2 0 AAA domain SMC_N PF02463.19 gi|344210686|ref|YP_004795006.1| - 0.026 14.0 0.0 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CARD PF00619.21 gi|344210686|ref|YP_004795006.1| - 0.038 14.0 1.0 0.19 11.8 0.1 2.3 2 0 0 2 2 2 0 Caspase recruitment domain AAA_24 PF13479.6 gi|344210686|ref|YP_004795006.1| - 0.057 13.1 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|344210686|ref|YP_004795006.1| - 0.071 12.5 0.0 12 5.3 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit TrwB_AAD_bind PF10412.9 gi|344210686|ref|YP_004795006.1| - 0.098 11.5 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DCX PF03607.17 gi|344210686|ref|YP_004795006.1| - 0.14 12.2 0.1 0.46 10.6 0.1 1.9 1 0 0 1 1 1 0 Doublecortin YppG PF14179.6 gi|344210686|ref|YP_004795006.1| - 3.1 8.6 7.4 2.4 8.9 0.8 2.3 2 0 0 2 2 2 0 YppG-like protein DUF2312 PF10073.9 gi|344210686|ref|YP_004795006.1| - 8.6 6.1 7.7 13 5.5 0.3 3.0 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Usp PF00582.26 gi|344210687|ref|YP_004795007.1| - 1.1e-18 68.1 3.3 2.3e-18 67.1 3.3 1.5 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|344210687|ref|YP_004795007.1| - 0.0017 18.0 0.0 0.0029 17.2 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain baeRF_family2 PF18844.1 gi|344210687|ref|YP_004795007.1| - 0.04 14.0 3.3 0.07 13.2 3.3 1.6 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 B12-binding PF02310.19 gi|344210687|ref|YP_004795007.1| - 0.056 13.5 0.2 0.096 12.7 0.1 1.5 1 1 0 1 1 1 0 B12 binding domain Thioredoxin PF00085.20 gi|344210688|ref|YP_004795008.1| - 6.9e-10 38.8 0.0 1.2e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344210688|ref|YP_004795008.1| - 0.00028 21.3 0.3 0.0099 16.3 0.3 2.5 1 1 0 1 1 1 1 Thioredoxin-like domain DUF2397 PF09660.10 gi|344210688|ref|YP_004795008.1| - 0.035 13.0 0.2 0.069 12.0 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2397) AhpC-TSA PF00578.21 gi|344210688|ref|YP_004795008.1| - 0.15 12.0 0.3 2.9 7.8 0.0 2.3 2 1 0 2 2 2 0 AhpC/TSA family ABC_tran PF00005.27 gi|344210689|ref|YP_004795009.1| - 1.9e-29 103.0 0.0 2.6e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210689|ref|YP_004795009.1| - 4.5e-10 39.8 0.5 9.9e-05 22.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|344210689|ref|YP_004795009.1| - 1.9e-05 25.3 0.0 2.5e-05 24.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344210689|ref|YP_004795009.1| - 0.00064 19.2 0.3 0.024 14.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|344210689|ref|YP_004795009.1| - 0.0012 19.0 0.1 0.011 15.9 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|344210689|ref|YP_004795009.1| - 0.011 14.4 0.0 0.06 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|344210689|ref|YP_004795009.1| - 0.012 15.3 1.4 0.021 14.5 0.1 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF433 PF04255.14 gi|344210689|ref|YP_004795009.1| - 0.019 14.8 0.0 0.47 10.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF433) DUF155 PF02582.14 gi|344210689|ref|YP_004795009.1| - 0.034 14.3 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised ACR, YagE family COG1723 AAA_29 PF13555.6 gi|344210689|ref|YP_004795009.1| - 0.047 13.4 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344210689|ref|YP_004795009.1| - 0.064 13.6 0.1 0.16 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|344210689|ref|YP_004795009.1| - 0.14 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal ABC_tran PF00005.27 gi|344210690|ref|YP_004795010.1| - 6.4e-28 98.0 0.0 8.2e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|344210690|ref|YP_004795010.1| - 4.3e-11 42.5 0.1 8.7e-11 41.5 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|344210690|ref|YP_004795010.1| - 2.4e-05 24.3 1.6 0.051 13.4 0.4 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344210690|ref|YP_004795010.1| - 0.00035 20.3 0.0 0.00075 19.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344210690|ref|YP_004795010.1| - 0.0035 17.7 0.1 0.0057 17.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344210690|ref|YP_004795010.1| - 0.0058 16.5 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|344210690|ref|YP_004795010.1| - 0.007 16.9 0.2 0.0086 16.6 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210690|ref|YP_004795010.1| - 0.014 15.1 0.0 0.024 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344210690|ref|YP_004795010.1| - 0.02 15.5 0.0 0.049 14.2 0.0 1.8 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344210690|ref|YP_004795010.1| - 0.02 15.0 0.1 0.076 13.1 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|344210690|ref|YP_004795010.1| - 0.029 14.7 0.0 0.07 13.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|344210690|ref|YP_004795010.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 gi|344210690|ref|YP_004795010.1| - 0.13 11.9 0.0 0.32 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 gi|344210690|ref|YP_004795010.1| - 0.16 12.4 0.0 0.29 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|344210690|ref|YP_004795010.1| - 0.17 11.1 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.19 gi|344210690|ref|YP_004795010.1| - 0.24 10.8 0.9 0.44 10.0 0.9 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.16 gi|344210691|ref|YP_004795011.1| - 1e-35 123.2 37.2 1.6e-35 122.6 37.2 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|344210692|ref|YP_004795012.1| - 2.8e-34 118.5 34.4 3.3e-34 118.3 34.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Ferric_reduct PF01794.19 gi|344210692|ref|YP_004795012.1| - 1.6 8.8 7.6 0.89 9.7 0.4 2.9 3 0 0 3 3 3 0 Ferric reductase like transmembrane component Peripla_BP_6 PF13458.6 gi|344210693|ref|YP_004795013.1| - 1.2e-66 225.8 7.7 1.5e-66 225.4 7.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344210693|ref|YP_004795013.1| - 6.3e-18 64.9 1.7 1.1e-17 64.1 1.7 1.3 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|344210693|ref|YP_004795013.1| - 1.6e-07 30.8 0.0 2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|344210693|ref|YP_004795013.1| - 0.00017 21.3 1.6 0.00041 20.1 1.6 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_4 PF13407.6 gi|344210693|ref|YP_004795013.1| - 0.0057 16.3 1.8 2.9 7.4 0.0 2.5 1 1 1 2 2 2 2 Periplasmic binding protein domain PAS_4 PF08448.10 gi|344210694|ref|YP_004795014.1| - 0.1 12.9 2.0 6.6 7.0 0.4 3.2 1 1 1 2 2 2 0 PAS fold MgtE PF01769.16 gi|344210695|ref|YP_004795015.1| - 6.2e-19 68.6 8.4 6.2e-19 68.6 8.4 1.5 2 0 0 2 2 2 1 Divalent cation transporter DUF2632 PF10943.8 gi|344210695|ref|YP_004795015.1| - 0.2 11.2 2.4 0.26 10.8 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2632) MgtE PF01769.16 gi|344210696|ref|YP_004795016.1| - 5.3e-22 78.5 13.2 5.3e-22 78.5 13.2 1.5 2 0 0 2 2 2 1 Divalent cation transporter DUF1422 PF07226.11 gi|344210696|ref|YP_004795016.1| - 1.4 8.9 6.9 0.11 12.5 1.3 2.1 3 1 0 3 3 3 0 Protein of unknown function (DUF1422) Acetyltransf_4 PF13420.7 gi|344210698|ref|YP_004795018.1| - 4.4e-12 46.4 0.0 5.6e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344210698|ref|YP_004795018.1| - 2.7e-11 43.7 0.0 4.3e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344210698|ref|YP_004795018.1| - 2.5e-08 34.2 0.0 4.7e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344210698|ref|YP_004795018.1| - 1.9e-06 27.8 0.0 3.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344210698|ref|YP_004795018.1| - 2.4e-05 24.3 0.0 5.8e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|344210698|ref|YP_004795018.1| - 0.0004 20.5 0.0 0.001 19.2 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|344210698|ref|YP_004795018.1| - 0.0019 18.4 0.7 0.011 15.9 0.1 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain LexA_DNA_bind PF01726.16 gi|344210698|ref|YP_004795018.1| - 0.16 11.8 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain CBS PF00571.28 gi|344210699|ref|YP_004795019.1| - 1.4e-28 99.1 10.6 1.5e-14 54.1 0.9 2.9 3 0 0 3 3 3 2 CBS domain MaoC_dehydratas PF01575.19 gi|344210699|ref|YP_004795019.1| - 5.7e-20 71.1 0.0 1.1e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344210699|ref|YP_004795019.1| - 2.2e-06 27.8 0.0 4.5e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.6 gi|344210699|ref|YP_004795019.1| - 0.16 12.5 0.0 0.3 11.6 0.0 1.5 1 1 0 1 1 1 0 Thioesterase-like superfamily LTD PF00932.19 gi|344210700|ref|YP_004795020.1| - 7.5e-25 87.5 3.4 7.5e-25 87.5 3.4 1.8 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|344210700|ref|YP_004795020.1| - 8.4e-19 68.1 0.0 1.3e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue PGM_PMM_II PF02879.16 gi|344210700|ref|YP_004795020.1| - 0.15 12.7 0.5 0.38 11.4 0.0 1.9 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Oxidored_molyb PF00174.19 gi|344210701|ref|YP_004795021.1| - 9.7e-28 96.9 0.0 1.7e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF5345 PF17280.2 gi|344210701|ref|YP_004795021.1| - 0.25 11.3 0.7 0.55 10.2 0.7 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5345) HAD_2 PF13419.6 gi|344210703|ref|YP_004795023.1| - 4.9e-20 72.3 0.0 6.8e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344210703|ref|YP_004795023.1| - 6.2e-10 39.7 0.9 1.2e-09 38.8 0.9 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344210703|ref|YP_004795023.1| - 3.5e-08 33.4 0.3 1.5e-06 28.2 0.0 2.4 2 0 0 2 2 2 1 HAD-hyrolase-like Glyco_hydro_20b PF02838.15 gi|344210703|ref|YP_004795023.1| - 0.15 12.9 0.6 2.7 8.8 0.3 2.2 1 1 1 2 2 2 0 Glycosyl hydrolase family 20, domain 2 RNA_binding PF01877.17 gi|344210704|ref|YP_004795024.1| - 1.4e-09 38.3 0.1 6e-09 36.2 0.1 1.9 1 1 0 1 1 1 1 RNA binding GPP34 PF05719.11 gi|344210704|ref|YP_004795024.1| - 0.013 15.6 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) AAA_17 PF13207.6 gi|344210705|ref|YP_004795025.1| - 2.2e-18 67.0 0.0 3.2e-18 66.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|344210705|ref|YP_004795025.1| - 1.3e-12 48.4 0.0 1.6e-12 48.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344210705|ref|YP_004795025.1| - 4.2e-05 23.7 0.0 6.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|344210705|ref|YP_004795025.1| - 0.00071 19.7 0.0 0.00083 19.5 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase PEP-utilizers PF00391.23 gi|344210705|ref|YP_004795025.1| - 0.0016 18.2 0.5 0.0044 16.7 0.5 1.7 1 1 0 1 1 1 1 PEP-utilising enzyme, mobile domain CoaE PF01121.20 gi|344210705|ref|YP_004795025.1| - 0.016 14.9 0.0 0.062 13.0 0.1 1.8 2 0 0 2 2 2 0 Dephospho-CoA kinase polyprenyl_synt PF00348.17 gi|344210706|ref|YP_004795026.1| - 5e-56 189.6 0.0 6.1e-56 189.3 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase ETF_alpha PF00766.19 gi|344210707|ref|YP_004795027.1| - 1.9e-35 120.8 0.9 4.7e-35 119.5 0.2 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|344210707|ref|YP_004795027.1| - 7e-32 110.8 3.3 1e-31 110.3 3.3 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|344210708|ref|YP_004795028.1| - 7.6e-41 140.0 5.3 7.6e-41 140.0 5.3 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain HTH_IclR PF09339.10 gi|344210709|ref|YP_004795029.1| - 0.0093 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain ABC2_membrane_3 PF12698.7 gi|344210709|ref|YP_004795029.1| - 0.076 12.1 0.0 0.17 10.9 0.0 1.5 2 0 0 2 2 2 0 ABC-2 family transporter protein BiPBP_C PF06832.12 gi|344210710|ref|YP_004795030.1| - 0.00035 20.5 0.5 0.0046 17.0 0.1 2.9 4 0 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family SHOCT PF09851.9 gi|344210710|ref|YP_004795030.1| - 0.015 15.0 0.1 0.032 14.0 0.1 1.6 1 0 0 1 1 1 0 Short C-terminal domain DUF4469 PF14734.6 gi|344210710|ref|YP_004795030.1| - 5.7 7.2 6.3 89 3.3 0.1 3.8 2 1 2 4 4 4 0 Domain of unknown function (DUF4469) with IG-like fold Methyltransf_11 PF08241.12 gi|344210711|ref|YP_004795031.1| - 1.3e-25 89.9 0.0 2.4e-25 89.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210711|ref|YP_004795031.1| - 8.1e-23 81.0 0.0 1.7e-22 80.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210711|ref|YP_004795031.1| - 2.9e-17 62.9 0.0 3.6e-17 62.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210711|ref|YP_004795031.1| - 1.5e-16 60.4 0.0 6.8e-14 51.8 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|344210711|ref|YP_004795031.1| - 7.6e-15 55.1 0.0 1.2e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210711|ref|YP_004795031.1| - 1.4e-14 54.7 0.0 2.1e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|344210711|ref|YP_004795031.1| - 2.4e-06 26.8 0.0 3.6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|344210711|ref|YP_004795031.1| - 2.7e-05 23.3 0.0 3.6e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|344210711|ref|YP_004795031.1| - 9.4e-05 22.1 0.0 0.00013 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|344210711|ref|YP_004795031.1| - 0.00011 22.0 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|344210711|ref|YP_004795031.1| - 0.00036 19.9 0.0 0.00076 18.8 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|344210711|ref|YP_004795031.1| - 0.00052 19.4 0.0 0.00073 18.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.11 gi|344210711|ref|YP_004795031.1| - 0.0087 15.7 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.16 gi|344210711|ref|YP_004795031.1| - 0.027 13.1 0.0 0.032 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|344210711|ref|YP_004795031.1| - 0.082 12.4 0.0 0.16 11.5 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain FtsJ PF01728.19 gi|344210711|ref|YP_004795031.1| - 0.084 13.0 0.0 0.094 12.8 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|344210711|ref|YP_004795031.1| - 0.2 11.6 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain V-ATPase_G PF03179.15 gi|344210712|ref|YP_004795032.1| - 0.00014 22.3 23.0 0.00032 21.2 23.0 1.6 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|344210712|ref|YP_004795032.1| - 0.00056 20.0 31.5 0.0013 18.8 31.5 1.7 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF883 PF05957.13 gi|344210712|ref|YP_004795032.1| - 0.002 18.7 17.3 0.095 13.3 4.7 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) HrpE PF06188.12 gi|344210712|ref|YP_004795032.1| - 0.004 17.0 10.2 0.0051 16.7 10.2 1.2 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E V-ATPase_G_2 PF16999.5 gi|344210712|ref|YP_004795032.1| - 0.0058 17.0 29.9 0.01 16.2 29.9 1.4 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit PIN_8 PF18476.1 gi|344210712|ref|YP_004795032.1| - 0.034 14.0 7.2 0.039 13.8 7.2 1.1 1 0 0 1 1 1 0 PIN like domain DUF3552 PF12072.8 gi|344210712|ref|YP_004795032.1| - 0.04 13.3 27.4 0.52 9.7 19.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.13 gi|344210712|ref|YP_004795032.1| - 0.068 13.3 20.3 0.53 10.4 8.8 2.2 1 1 1 2 2 2 0 DivIVA protein Sds3 PF08598.11 gi|344210712|ref|YP_004795032.1| - 0.086 12.8 8.9 0.11 12.4 8.9 1.2 1 0 0 1 1 1 0 Sds3-like Apolipoprotein PF01442.18 gi|344210712|ref|YP_004795032.1| - 0.1 12.5 21.4 0.17 11.7 21.4 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain YtxH PF12732.7 gi|344210712|ref|YP_004795032.1| - 0.11 13.0 13.5 37 4.9 13.5 2.3 1 1 0 1 1 1 0 YtxH-like protein Mitofilin PF09731.9 gi|344210712|ref|YP_004795032.1| - 0.16 10.8 18.1 0.18 10.6 18.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Atg14 PF10186.9 gi|344210712|ref|YP_004795032.1| - 0.37 9.8 8.4 0.42 9.6 8.4 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2514 PF10721.9 gi|344210712|ref|YP_004795032.1| - 0.4 10.7 13.4 0.51 10.3 13.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2514) Remorin_C PF03763.13 gi|344210712|ref|YP_004795032.1| - 1.1 9.2 18.8 0.57 10.1 6.2 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region OmpH PF03938.14 gi|344210712|ref|YP_004795032.1| - 1.1 9.6 18.0 1.4 9.3 18.0 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) dCache_2 PF08269.11 gi|344210712|ref|YP_004795032.1| - 1.8 7.6 5.6 0.88 8.7 3.7 1.5 1 1 0 1 1 1 0 Cache domain Caudo_TAP PF02413.17 gi|344210712|ref|YP_004795032.1| - 2.5 8.3 15.8 37 4.5 9.1 2.3 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK HSP70 PF00012.20 gi|344210712|ref|YP_004795032.1| - 3.1 5.9 14.0 3.6 5.6 14.0 1.0 1 0 0 1 1 1 0 Hsp70 protein DUF4407 PF14362.6 gi|344210712|ref|YP_004795032.1| - 7.7 5.8 12.7 10 5.4 12.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) kleA_kleC PF17383.2 gi|344210712|ref|YP_004795032.1| - 8 6.9 18.2 0.12 12.7 3.9 2.7 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A V_ATPase_I PF01496.19 gi|344210713|ref|YP_004795033.1| - 7.5e-14 50.6 12.4 1.4e-07 29.9 0.1 4.2 4 2 1 5 5 5 2 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|344210713|ref|YP_004795033.1| - 0.0037 17.6 5.1 2.1 8.8 0.0 2.6 2 0 0 2 2 2 2 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|344210713|ref|YP_004795033.1| - 0.0051 17.2 4.1 0.13 12.8 0.8 2.4 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.20 gi|344210713|ref|YP_004795033.1| - 0.011 15.6 1.1 3.7 7.6 0.1 2.3 2 0 0 2 2 2 0 Prefoldin subunit CCDC-167 PF15188.6 gi|344210713|ref|YP_004795033.1| - 0.023 15.0 2.4 0.49 10.8 0.1 2.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Tektin PF03148.14 gi|344210713|ref|YP_004795033.1| - 0.036 12.8 1.1 0.67 8.6 0.0 2.0 2 0 0 2 2 2 0 Tektin family EMP24_GP25L PF01105.24 gi|344210713|ref|YP_004795033.1| - 0.039 13.9 0.4 5.3 6.9 0.1 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD BBS2_C PF14782.6 gi|344210713|ref|YP_004795033.1| - 0.072 11.8 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal DHR10 PF18595.1 gi|344210713|ref|YP_004795033.1| - 0.082 13.0 5.2 1.1 9.3 0.4 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain CENP-F_leu_zip PF10473.9 gi|344210713|ref|YP_004795033.1| - 0.2 11.7 3.6 6.7 6.7 0.9 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tnp_22_trimer PF17489.2 gi|344210713|ref|YP_004795033.1| - 0.3 11.1 3.4 1.4 9.0 0.1 3.0 2 1 1 3 3 3 0 L1 transposable element trimerization domain APG6_N PF17675.1 gi|344210713|ref|YP_004795033.1| - 0.31 11.6 8.6 0.82 10.2 3.1 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region Nas2_N PF18265.1 gi|344210713|ref|YP_004795033.1| - 0.36 10.8 1.4 15 5.5 0.8 2.5 2 0 0 2 2 2 0 Nas2 N_terminal domain Syntaxin-6_N PF09177.11 gi|344210713|ref|YP_004795033.1| - 0.4 11.3 1.6 16 6.1 0.1 2.5 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Spc24 PF08286.11 gi|344210713|ref|YP_004795033.1| - 0.64 10.3 2.6 25 5.2 1.0 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Rho_Binding PF08912.11 gi|344210713|ref|YP_004795033.1| - 0.65 10.8 3.4 3.6 8.5 1.1 2.3 2 0 0 2 2 2 0 Rho Binding MscS_porin PF12795.7 gi|344210713|ref|YP_004795033.1| - 0.8 9.2 5.6 1.5 8.3 1.7 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain TPD52 PF04201.15 gi|344210713|ref|YP_004795033.1| - 5.1 6.7 5.0 33 4.1 0.2 2.3 2 0 0 2 2 2 0 Tumour protein D52 family DUF4164 PF13747.6 gi|344210713|ref|YP_004795033.1| - 8 6.8 8.4 7.9 6.8 0.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF4407 PF14362.6 gi|344210713|ref|YP_004795033.1| - 8.6 5.6 6.0 16 4.8 0.2 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) ATP-synt_C PF00137.21 gi|344210714|ref|YP_004795034.1| - 3.1e-14 53.1 11.2 3.1e-14 53.1 11.2 1.5 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|344210715|ref|YP_004795035.1| - 2.1e-41 141.5 8.6 2.8e-41 141.1 8.6 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V-ATPase_G_2 PF16999.5 gi|344210715|ref|YP_004795035.1| - 0.0031 17.9 18.0 0.006 17.0 18.0 1.5 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|344210715|ref|YP_004795035.1| - 0.091 12.9 14.8 0.053 13.6 11.5 2.2 1 1 1 2 2 2 0 DivIVA protein ATP-synt_B PF00430.18 gi|344210715|ref|YP_004795035.1| - 0.28 11.3 26.8 0.71 10.0 24.2 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) LPP20 PF02169.16 gi|344210715|ref|YP_004795035.1| - 0.42 11.0 2.2 2.9 8.3 0.1 2.7 2 2 1 3 3 3 0 LPP20 lipoprotein HrpE PF06188.12 gi|344210715|ref|YP_004795035.1| - 1.4 8.7 12.4 3.1 7.6 12.4 1.6 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E T4_Rnl2_C PF18043.1 gi|344210715|ref|YP_004795035.1| - 2.5 8.3 0.0 2.5 8.3 0.0 3.5 3 1 1 4 4 4 0 T4 RNA ligase 2 C-terminal vATP-synt_AC39 PF01992.16 gi|344210716|ref|YP_004795036.1| - 2.9e-82 276.9 2.9 3.2e-82 276.7 2.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.8 gi|344210716|ref|YP_004795036.1| - 0.044 14.2 1.1 1.3 9.5 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3209) ATP-synt_F PF01990.17 gi|344210717|ref|YP_004795037.1| - 5.5e-15 55.5 0.0 6.2e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|344210718|ref|YP_004795038.1| - 3.2e-93 311.2 0.0 4.4e-93 310.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|344210718|ref|YP_004795038.1| - 2.5e-40 137.1 0.1 4.1e-40 136.4 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|344210718|ref|YP_004795038.1| - 5.5e-12 46.0 3.6 2e-11 44.2 3.6 2.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.22 gi|344210718|ref|YP_004795038.1| - 0.012 15.8 0.2 2.7 8.3 0.0 2.7 3 0 0 3 3 3 0 Peptidase family M23 QRPTase_N PF02749.16 gi|344210718|ref|YP_004795038.1| - 0.025 14.6 0.2 12 6.0 0.0 2.8 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain AAA_22 PF13401.6 gi|344210718|ref|YP_004795038.1| - 0.034 14.4 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Npun_R1517 PF18068.1 gi|344210718|ref|YP_004795038.1| - 0.14 12.5 0.2 0.45 10.9 0.0 1.9 2 0 0 2 2 2 0 Npun R1517 ATP-synt_ab PF00006.25 gi|344210719|ref|YP_004795039.1| - 1.8e-65 220.6 0.0 2.5e-65 220.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|344210719|ref|YP_004795039.1| - 1.5e-15 57.4 0.4 4.5e-15 55.9 0.4 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|344210719|ref|YP_004795039.1| - 0.00017 21.7 0.4 0.00072 19.7 0.4 2.1 1 0 0 1 1 1 1 HAS barrel domain Bac_rhodopsin PF01036.18 gi|344210720|ref|YP_004795040.1| - 1.4e-70 237.4 15.8 1.6e-70 237.2 15.8 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein SUR7 PF06687.12 gi|344210720|ref|YP_004795040.1| - 0.064 12.9 1.2 0.45 10.1 0.1 2.3 2 1 0 2 2 2 0 SUR7/PalI family DUF4131 PF13567.6 gi|344210720|ref|YP_004795040.1| - 5.5 6.6 12.3 0.31 10.7 4.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ATP-synt_D PF01813.17 gi|344210721|ref|YP_004795041.1| - 2e-54 184.4 10.4 2.4e-54 184.2 10.4 1.1 1 0 0 1 1 1 1 ATP synthase subunit D DUF948 PF06103.11 gi|344210721|ref|YP_004795041.1| - 0.23 11.8 1.7 4.6 7.6 0.1 2.7 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1272 PF06906.11 gi|344210722|ref|YP_004795042.1| - 0.11 12.7 1.0 0.19 11.8 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf_Rg PF17915.1 gi|344210722|ref|YP_004795042.1| - 0.65 9.4 2.5 0.75 9.2 0.2 2.0 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-ribbon_3 PF13248.6 gi|344210722|ref|YP_004795042.1| - 1.1 8.8 3.7 3.3 7.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain eRF1_2 PF03464.15 gi|344210723|ref|YP_004795043.1| - 1.3e-42 145.3 0.0 3.4e-42 143.9 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|344210723|ref|YP_004795043.1| - 9.2e-29 100.2 0.3 2.7e-28 98.7 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|344210723|ref|YP_004795043.1| - 2.5e-17 63.4 0.5 5.4e-17 62.3 0.1 1.7 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|344210723|ref|YP_004795043.1| - 1.2e-14 54.8 0.2 1.2e-13 51.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|344210723|ref|YP_004795043.1| - 7.6e-08 32.4 0.0 1.2e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 baeRF_family12 PF18856.1 gi|344210723|ref|YP_004795043.1| - 0.0092 16.6 0.0 0.024 15.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 12 Zn-ribbon_8 PF09723.10 gi|344210723|ref|YP_004795043.1| - 0.079 13.1 1.2 0.14 12.3 0.3 1.8 2 0 0 2 2 2 0 Zinc ribbon domain O-FucT PF10250.9 gi|344210723|ref|YP_004795043.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 GDP-fucose protein O-fucosyltransferase AAA_31 PF13614.6 gi|344210724|ref|YP_004795044.1| - 1.1e-18 67.8 0.0 1.9e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|344210724|ref|YP_004795044.1| - 3.9e-18 65.8 8.7 3.4e-16 59.5 8.7 2.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|344210724|ref|YP_004795044.1| - 1.3e-16 60.8 0.0 2.4e-16 60.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|344210724|ref|YP_004795044.1| - 3.8e-09 36.4 0.0 6.4e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|344210724|ref|YP_004795044.1| - 1.7e-08 34.1 0.4 3.9e-08 32.9 0.4 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|344210724|ref|YP_004795044.1| - 3.4e-07 30.3 4.1 1.6e-06 28.1 0.3 2.9 2 1 0 2 2 2 1 AAA domain Fer4_NifH PF00142.18 gi|344210724|ref|YP_004795044.1| - 5e-07 29.4 0.4 0.00093 18.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|344210724|ref|YP_004795044.1| - 3.2e-05 23.3 2.5 9.8e-05 21.7 1.1 2.1 1 1 0 2 2 2 1 Anion-transporting ATPase SRP54 PF00448.22 gi|344210724|ref|YP_004795044.1| - 0.0002 21.0 2.3 0.013 15.1 0.5 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|344210724|ref|YP_004795044.1| - 0.00094 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|344210724|ref|YP_004795044.1| - 0.00096 18.2 2.2 0.12 11.3 0.3 2.2 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF1611 PF07755.11 gi|344210724|ref|YP_004795044.1| - 0.0031 16.8 1.0 0.067 12.5 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain CLP1_P PF16575.5 gi|344210724|ref|YP_004795044.1| - 0.0052 16.6 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop VirC1 PF07015.11 gi|344210724|ref|YP_004795044.1| - 0.016 14.5 0.9 0.062 12.6 0.3 1.9 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.6 gi|344210724|ref|YP_004795044.1| - 0.043 13.4 3.1 0.061 12.9 1.5 2.0 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|344210724|ref|YP_004795044.1| - 0.046 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|344210724|ref|YP_004795044.1| - 0.13 12.2 0.1 1 9.2 0.1 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.10 gi|344210724|ref|YP_004795044.1| - 0.22 10.9 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HTH_10 PF04967.12 gi|344210725|ref|YP_004795045.1| - 3.7e-22 77.9 0.3 5.8e-22 77.2 0.3 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344210725|ref|YP_004795045.1| - 0.0028 17.5 0.8 0.0071 16.2 0.8 1.7 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_1 PF00126.27 gi|344210725|ref|YP_004795045.1| - 0.04 13.9 0.7 0.12 12.4 0.7 1.9 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|344210725|ref|YP_004795045.1| - 0.075 12.6 0.4 0.17 11.5 0.4 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Fibrinogen_BP PF08017.11 gi|344210725|ref|YP_004795045.1| - 0.13 10.7 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Fibrinogen binding protein HTH_30 PF13556.6 gi|344210725|ref|YP_004795045.1| - 0.19 11.6 1.0 0.45 10.3 0.2 2.0 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_22 PF13309.6 gi|344210725|ref|YP_004795045.1| - 0.19 11.8 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain Abhydrolase_6 PF12697.7 gi|344210726|ref|YP_004795046.1| - 4.2e-17 63.5 9.8 4.9e-17 63.3 9.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344210726|ref|YP_004795046.1| - 4.5e-07 29.8 0.0 0.00064 19.5 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344210726|ref|YP_004795046.1| - 0.0029 16.9 0.0 0.014 14.6 0.0 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_8 PF06259.12 gi|344210726|ref|YP_004795046.1| - 0.0031 17.2 0.0 0.0047 16.6 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase Abhydrolase_4 PF08386.10 gi|344210726|ref|YP_004795046.1| - 0.013 15.7 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Thioesterase PF00975.20 gi|344210726|ref|YP_004795046.1| - 0.015 15.4 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain PAF-AH_p_II PF03403.13 gi|344210726|ref|YP_004795046.1| - 0.12 10.8 0.0 0.16 10.4 0.0 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF2974 PF11187.8 gi|344210726|ref|YP_004795046.1| - 0.14 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) tRNA-synt_1d PF00750.19 gi|344210727|ref|YP_004795047.1| - 1.4e-37 129.5 0.0 1.9e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|344210727|ref|YP_004795047.1| - 1.6e-35 121.9 0.0 5.1e-35 120.2 0.0 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|344210727|ref|YP_004795047.1| - 3.4e-10 40.4 0.0 1.1e-09 38.7 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|344210727|ref|YP_004795047.1| - 0.0093 14.9 0.0 0.071 12.0 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|344210727|ref|YP_004795047.1| - 0.034 13.5 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Peptidase_M50 PF02163.22 gi|344210728|ref|YP_004795048.1| - 1.1e-24 87.1 0.0 1.9e-24 86.3 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|344210728|ref|YP_004795048.1| - 5.1e-23 81.2 2.1 2e-08 34.4 0.0 3.4 1 1 2 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|344210728|ref|YP_004795048.1| - 1.7e-14 53.4 1.3 2.5e-08 33.6 1.0 3.5 3 0 0 3 3 3 3 PDZ domain Tricorn_PDZ PF14685.6 gi|344210728|ref|YP_004795048.1| - 6.7e-12 45.2 7.4 2.1e-06 27.6 1.2 3.5 2 1 0 3 3 3 3 Tricorn protease PDZ domain PDZ PF00595.24 gi|344210728|ref|YP_004795048.1| - 9.2e-10 38.7 5.9 1.1e-06 28.9 0.8 3.7 3 1 1 4 4 4 2 PDZ domain PDZ_1 PF12812.7 gi|344210728|ref|YP_004795048.1| - 0.032 14.2 0.1 13 5.9 0.0 3.2 3 0 0 3 3 3 0 PDZ-like domain PDZ_3 PF17815.1 gi|344210728|ref|YP_004795048.1| - 0.17 11.8 0.0 0.97 9.3 0.1 2.0 2 0 0 2 2 2 0 PDZ domain Myosin_N PF02736.19 gi|344210728|ref|YP_004795048.1| - 7.2 6.5 6.2 2.9 7.8 0.5 2.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Usp PF00582.26 gi|344210729|ref|YP_004795049.1| - 5e-55 185.9 11.3 2.4e-29 102.7 1.2 2.1 2 0 0 2 2 2 2 Universal stress protein family CbiJ PF02571.14 gi|344210729|ref|YP_004795049.1| - 0.057 12.9 0.2 0.24 10.9 0.1 1.9 2 0 0 2 2 2 0 Precorrin-6x reductase CbiJ/CobK DUF4428 PF14471.6 gi|344210730|ref|YP_004795050.1| - 0.0081 16.1 1.2 0.028 14.3 1.2 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4428) Endonuclease_7 PF02945.15 gi|344210730|ref|YP_004795050.1| - 0.016 15.1 0.1 0.016 15.1 0.1 1.0 1 0 0 1 1 1 0 Recombination endonuclease VII LPMO_10 PF03067.15 gi|344210730|ref|YP_004795050.1| - 0.028 15.1 0.0 0.028 15.1 0.0 1.1 1 0 0 1 1 1 0 Lytic polysaccharide mono-oxygenase, cellulose-degrading FYVE PF01363.21 gi|344210730|ref|YP_004795050.1| - 0.049 13.8 0.2 0.068 13.3 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger AdoMet_dc PF02675.15 gi|344210730|ref|YP_004795050.1| - 0.057 13.7 0.1 0.06 13.6 0.1 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase Elf1 PF05129.13 gi|344210730|ref|YP_004795050.1| - 0.12 12.4 0.6 0.49 10.5 0.6 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like tRNA-synt_1f PF01921.18 gi|344210731|ref|YP_004795051.1| - 3.1e-102 342.2 0.0 4.4e-102 341.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|344210731|ref|YP_004795051.1| - 1.5e-07 30.6 0.0 5.9e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|344210731|ref|YP_004795051.1| - 0.00037 19.9 0.0 0.014 14.8 0.0 2.8 4 0 0 4 4 4 1 tRNA synthetases class I (C) catalytic domain Baculo_LEF5_C PF11792.8 gi|344210731|ref|YP_004795051.1| - 0.013 15.2 0.3 0.37 10.5 0.0 2.6 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain tRNA-synt_1b PF00579.25 gi|344210731|ref|YP_004795051.1| - 0.14 11.4 0.0 2.6 7.3 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.28 gi|344210732|ref|YP_004795052.1| - 4e-29 101.9 3.5 1e-28 100.6 3.5 1.6 1 1 0 1 1 1 1 Amino acid kinase family Peptidase_M50 PF02163.22 gi|344210734|ref|YP_004795054.1| - 1.1e-14 54.4 7.8 1.2e-11 44.3 7.8 2.3 1 1 0 1 1 1 1 Peptidase family M50 AIRS PF00586.24 gi|344210735|ref|YP_004795055.1| - 1.1e-18 67.7 5.7 2e-18 66.8 5.7 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|344210735|ref|YP_004795055.1| - 2.2e-09 37.7 0.0 3.7e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain LPG_synthase_TM PF03706.13 gi|344210736|ref|YP_004795056.1| - 4.8e-38 131.4 42.4 6e-38 131.1 42.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Ribosomal_S19e PF01090.19 gi|344210737|ref|YP_004795057.1| - 1.2e-48 164.2 0.0 1.4e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e MarR_2 PF12802.7 gi|344210737|ref|YP_004795057.1| - 0.004 17.0 0.9 0.04 13.8 0.0 2.6 3 0 0 3 3 3 1 MarR family GntR PF00392.21 gi|344210737|ref|YP_004795057.1| - 0.013 15.1 0.0 0.2 11.3 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Mrr_N PF14338.6 gi|344210737|ref|YP_004795057.1| - 0.016 15.3 0.2 0.33 11.1 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain dsDNA_bind PF01984.20 gi|344210738|ref|YP_004795058.1| - 4e-25 88.3 13.9 4.8e-25 88.0 13.9 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain cwf18 PF08315.12 gi|344210738|ref|YP_004795058.1| - 0.054 14.2 10.1 0.065 13.9 10.1 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor DUF1054 PF06335.12 gi|344210738|ref|YP_004795058.1| - 0.35 10.8 3.0 0.4 10.6 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1054) Asn_synthase PF00733.21 gi|344210739|ref|YP_004795059.1| - 0.01 15.5 0.0 0.015 15.0 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.13 gi|344210739|ref|YP_004795059.1| - 0.033 13.7 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|344210739|ref|YP_004795059.1| - 0.058 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Diphthamide synthase ATPase PF06745.13 gi|344210740|ref|YP_004795060.1| - 3.2e-11 43.0 0.0 1.5e-06 27.7 0.0 2.0 1 1 1 2 2 2 2 KaiC Rad51 PF08423.11 gi|344210740|ref|YP_004795060.1| - 0.025 13.9 0.0 0.08 12.2 0.0 1.7 2 0 0 2 2 2 0 Rad51 GvpD PF07088.11 gi|344210740|ref|YP_004795060.1| - 0.075 11.6 0.1 0.53 8.8 0.0 2.0 1 1 0 2 2 2 0 GvpD gas vesicle protein PAXNEB PF05625.11 gi|344210740|ref|YP_004795060.1| - 0.096 11.8 0.0 0.73 8.9 0.0 1.9 2 0 0 2 2 2 0 PAXNEB protein tRNA-synt_His PF13393.6 gi|344210741|ref|YP_004795061.1| - 2.5e-55 187.9 0.1 3.3e-55 187.6 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|344210741|ref|YP_004795061.1| - 1.6e-11 44.2 0.0 3.5e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|344210741|ref|YP_004795061.1| - 7.8e-10 39.0 0.0 1.3e-09 38.3 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Autoind_bind PF03472.15 gi|344210741|ref|YP_004795061.1| - 0.075 12.5 0.0 0.3 10.5 0.0 2.0 2 0 0 2 2 2 0 Autoinducer binding domain SHOCT PF09851.9 gi|344210742|ref|YP_004795062.1| - 2.1e-09 36.8 0.2 3e-09 36.3 0.2 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|344210742|ref|YP_004795062.1| - 5.6e-05 23.1 1.4 7e-05 22.8 0.5 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|344210742|ref|YP_004795062.1| - 0.082 12.9 0.7 0.11 12.5 0.7 1.3 1 0 0 1 1 1 0 Gas vesicle protein G Acetyltransf_1 PF00583.25 gi|344210744|ref|YP_004795064.1| - 9.4e-17 61.3 0.0 1.2e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344210744|ref|YP_004795064.1| - 2.6e-13 50.2 0.0 5.5e-13 49.1 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344210744|ref|YP_004795064.1| - 6.3e-12 45.5 0.0 8.5e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344210744|ref|YP_004795064.1| - 2.1e-08 35.0 0.0 2.5e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344210744|ref|YP_004795064.1| - 1e-06 28.9 0.0 0.033 14.3 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344210744|ref|YP_004795064.1| - 5.6e-06 26.2 0.0 8.7e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|344210744|ref|YP_004795064.1| - 8.5e-05 22.7 0.0 0.00012 22.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|344210744|ref|YP_004795064.1| - 0.03 14.0 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344210744|ref|YP_004795064.1| - 0.095 12.8 0.0 0.21 11.7 0.0 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|344210744|ref|YP_004795064.1| - 0.18 11.8 0.0 2.5 8.2 0.0 2.1 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase PseudoU_synth_1 PF01416.20 gi|344210745|ref|YP_004795065.1| - 2.6e-17 63.2 0.0 1.7e-14 54.2 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.20 gi|344210746|ref|YP_004795066.1| - 1.4e-68 232.2 1.8 1.4e-68 232.2 1.8 1.7 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|344210746|ref|YP_004795066.1| - 4.7e-23 81.2 0.1 4.7e-23 81.2 0.1 3.2 3 0 0 3 3 3 1 Oligopeptidase F Reprolysin_3 PF13582.6 gi|344210746|ref|YP_004795066.1| - 0.46 11.0 0.1 0.46 11.0 0.1 2.5 3 0 0 3 3 3 0 Metallo-peptidase family M12B Reprolysin-like AAA PF00004.29 gi|344210747|ref|YP_004795067.1| - 4.8e-43 146.8 1.3 8e-43 146.0 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|344210747|ref|YP_004795067.1| - 9.4e-13 47.8 0.9 8e-12 44.8 0.3 2.7 2 0 0 2 2 2 1 AAA+ lid domain AAA_2 PF07724.14 gi|344210747|ref|YP_004795067.1| - 6.1e-08 33.0 0.1 1.5e-07 31.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|344210747|ref|YP_004795067.1| - 4e-07 29.9 0.2 3.4e-06 26.9 0.0 2.4 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|344210747|ref|YP_004795067.1| - 7.4e-06 26.5 3.5 0.00072 20.0 0.1 3.3 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|344210747|ref|YP_004795067.1| - 1.8e-05 24.7 2.1 4.2e-05 23.6 0.3 2.5 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|344210747|ref|YP_004795067.1| - 0.00011 21.5 0.0 0.00022 20.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|344210747|ref|YP_004795067.1| - 0.00034 20.9 4.2 0.0074 16.6 0.0 3.1 2 1 1 3 3 3 1 AAA domain TIP49 PF06068.13 gi|344210747|ref|YP_004795067.1| - 0.00099 18.4 0.0 0.0021 17.4 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain Rootletin PF15035.6 gi|344210747|ref|YP_004795067.1| - 0.0022 18.0 3.6 0.0045 17.0 3.6 1.4 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion Taxilin PF09728.9 gi|344210747|ref|YP_004795067.1| - 0.0022 17.2 1.5 0.0035 16.6 1.5 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein AAA_33 PF13671.6 gi|344210747|ref|YP_004795067.1| - 0.0022 18.1 0.5 0.0052 17.0 0.1 2.0 2 1 0 2 2 1 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|344210747|ref|YP_004795067.1| - 0.0028 17.6 0.5 0.0072 16.3 0.1 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain Sigma54_activat PF00158.26 gi|344210747|ref|YP_004795067.1| - 0.0032 17.2 0.3 0.043 13.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_28 PF13521.6 gi|344210747|ref|YP_004795067.1| - 0.0032 17.7 1.7 0.0089 16.3 0.1 2.5 2 1 0 2 2 2 1 AAA domain ApoO PF09769.9 gi|344210747|ref|YP_004795067.1| - 0.005 16.8 0.1 0.47 10.4 0.0 2.3 2 0 0 2 2 2 1 Apolipoprotein O NACHT PF05729.12 gi|344210747|ref|YP_004795067.1| - 0.0066 16.4 0.3 0.054 13.4 0.1 2.3 1 1 0 2 2 2 1 NACHT domain Mg_chelatase PF01078.21 gi|344210747|ref|YP_004795067.1| - 0.0074 15.7 0.0 0.016 14.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|344210747|ref|YP_004795067.1| - 0.0084 16.1 0.1 0.022 14.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain COG6 PF06419.11 gi|344210747|ref|YP_004795067.1| - 0.0095 14.2 1.2 0.015 13.6 1.2 1.2 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 AAA_3 PF07726.11 gi|344210747|ref|YP_004795067.1| - 0.0099 15.7 0.0 0.024 14.5 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) GAS PF13851.6 gi|344210747|ref|YP_004795067.1| - 0.013 14.8 0.6 0.027 13.8 0.6 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Zeta_toxin PF06414.12 gi|344210747|ref|YP_004795067.1| - 0.015 14.6 0.0 0.033 13.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin CPT PF07931.12 gi|344210747|ref|YP_004795067.1| - 0.015 15.2 0.0 0.033 14.0 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Prot_ATP_OB_N PF17758.1 gi|344210747|ref|YP_004795067.1| - 0.016 14.9 0.1 0.051 13.2 0.1 2.0 1 0 0 1 1 1 0 Proteasomal ATPase OB N-terminal domain bZIP_1 PF00170.21 gi|344210747|ref|YP_004795067.1| - 0.016 15.3 3.5 0.4 10.8 0.2 2.6 1 1 1 2 2 2 0 bZIP transcription factor HAP1_N PF04849.13 gi|344210747|ref|YP_004795067.1| - 0.016 14.4 3.6 0.032 13.5 3.6 1.4 1 0 0 1 1 1 0 HAP1 N-terminal conserved region NTPase_1 PF03266.15 gi|344210747|ref|YP_004795067.1| - 0.017 15.0 0.7 0.39 10.6 0.0 2.8 3 0 0 3 3 3 0 NTPase Torsin PF06309.11 gi|344210747|ref|YP_004795067.1| - 0.02 15.0 0.0 0.041 14.0 0.0 1.4 1 0 0 1 1 1 0 Torsin TsaE PF02367.17 gi|344210747|ref|YP_004795067.1| - 0.02 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|344210747|ref|YP_004795067.1| - 0.021 15.3 0.3 0.094 13.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|344210747|ref|YP_004795067.1| - 0.03 14.7 1.6 0.073 13.5 0.2 2.5 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|344210747|ref|YP_004795067.1| - 0.03 13.5 0.0 0.077 12.2 0.0 1.7 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|344210747|ref|YP_004795067.1| - 0.04 13.6 0.1 0.13 12.0 0.0 1.8 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|344210747|ref|YP_004795067.1| - 0.062 12.8 0.0 0.16 11.5 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|344210747|ref|YP_004795067.1| - 0.099 13.0 0.0 0.22 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.9 gi|344210747|ref|YP_004795067.1| - 0.1 11.8 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF5595 PF18077.1 gi|344210747|ref|YP_004795067.1| - 0.11 12.6 2.0 0.25 11.5 2.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5595) ATPase PF06745.13 gi|344210747|ref|YP_004795067.1| - 0.11 11.9 2.8 0.2 11.0 0.4 2.4 2 1 0 2 2 2 0 KaiC Laminin_II PF06009.12 gi|344210747|ref|YP_004795067.1| - 0.11 12.5 1.1 0.3 11.1 0.9 1.8 2 0 0 2 2 1 0 Laminin Domain II ABC_tran PF00005.27 gi|344210747|ref|YP_004795067.1| - 0.13 12.8 0.1 0.53 10.8 0.0 2.1 2 0 0 2 2 2 0 ABC transporter YabA PF06156.13 gi|344210747|ref|YP_004795067.1| - 0.16 12.6 2.5 0.44 11.2 1.9 2.0 2 0 0 2 2 1 0 Initiation control protein YabA AAA_24 PF13479.6 gi|344210747|ref|YP_004795067.1| - 0.17 11.6 0.7 0.43 10.3 0.1 2.0 2 1 0 2 2 2 0 AAA domain APG6_N PF17675.1 gi|344210747|ref|YP_004795067.1| - 0.21 12.1 4.4 0.71 10.4 4.4 1.9 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF3450 PF11932.8 gi|344210747|ref|YP_004795067.1| - 0.25 10.6 3.8 0.12 11.6 0.9 1.9 3 0 0 3 3 1 0 Protein of unknown function (DUF3450) MEDS PF14417.6 gi|344210747|ref|YP_004795067.1| - 0.28 11.0 1.7 3.9 7.3 0.0 2.9 3 1 0 3 3 3 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Nsp1_C PF05064.13 gi|344210747|ref|YP_004795067.1| - 0.33 10.8 2.9 0.7 9.7 2.9 1.6 1 0 0 1 1 1 0 Nsp1-like C-terminal region AAA_13 PF13166.6 gi|344210747|ref|YP_004795067.1| - 0.37 9.4 2.2 2 7.0 0.9 2.4 3 0 0 3 3 3 0 AAA domain TSC22 PF01166.18 gi|344210747|ref|YP_004795067.1| - 0.57 10.5 9.0 0.17 12.2 0.6 3.1 2 1 1 3 3 2 0 TSC-22/dip/bun family bZIP_2 PF07716.15 gi|344210747|ref|YP_004795067.1| - 0.69 10.0 3.4 0.53 10.4 0.5 2.2 1 1 1 2 2 2 0 Basic region leucine zipper DivIC PF04977.15 gi|344210747|ref|YP_004795067.1| - 1.1 9.1 4.5 1 9.2 2.7 1.9 2 0 0 2 2 1 0 Septum formation initiator AAA_25 PF13481.6 gi|344210747|ref|YP_004795067.1| - 2.6 7.6 7.2 1.9 8.0 0.2 3.1 2 1 0 3 3 3 0 AAA domain ZapB PF06005.12 gi|344210747|ref|YP_004795067.1| - 6 7.4 11.2 0.94 10.0 5.4 2.5 3 0 0 3 3 2 0 Cell division protein ZapB TolA_bind_tri PF16331.5 gi|344210747|ref|YP_004795067.1| - 6 7.0 11.0 0.43 10.7 3.8 2.6 3 0 0 3 3 2 0 TolA binding protein trimerisation PQQ_2 PF13360.6 gi|344210748|ref|YP_004795068.1| - 4.9e-53 180.2 35.0 8.9e-22 77.8 9.0 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|344210748|ref|YP_004795068.1| - 5.9e-52 172.9 39.4 2.1e-11 44.0 0.1 8.2 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|344210748|ref|YP_004795068.1| - 3.2e-38 127.9 15.6 5.1e-09 35.6 0.1 7.7 7 0 0 7 7 7 6 PQQ enzyme repeat SUKH-4 PF14435.6 gi|344210748|ref|YP_004795068.1| - 0.022 14.8 9.8 1.8 8.6 0.1 4.6 3 1 0 3 3 3 0 SUKH-4 immunity protein TruB_C PF09142.11 gi|344210748|ref|YP_004795068.1| - 3.4 7.5 7.5 5.3 6.9 0.3 4.1 5 1 0 5 5 5 0 tRNA Pseudouridine synthase II, C terminal PvlArgDC PF01862.16 gi|344210749|ref|YP_004795069.1| - 8.6e-33 113.4 0.1 1.1e-32 113.1 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) Gram_pos_anchor PF00746.21 gi|344210751|ref|YP_004795071.1| - 4.5 7.3 5.7 4.8 7.2 0.0 2.3 1 1 1 2 2 2 0 LPXTG cell wall anchor motif GTP_EFTU PF00009.27 gi|344210752|ref|YP_004795072.1| - 4e-30 104.8 0.1 8.5e-29 100.5 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|344210752|ref|YP_004795072.1| - 1.6e-25 88.8 0.2 6.7e-25 86.8 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|344210752|ref|YP_004795072.1| - 5.1e-23 81.2 0.3 1.6e-22 79.6 0.3 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|344210752|ref|YP_004795072.1| - 1.9e-13 50.6 4.4 7.6e-09 35.8 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|344210752|ref|YP_004795072.1| - 2e-08 34.3 0.5 7.6e-08 32.4 0.0 2.3 3 0 0 3 3 3 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|344210752|ref|YP_004795072.1| - 0.00053 20.1 0.3 0.11 12.6 0.1 2.7 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|344210752|ref|YP_004795072.1| - 0.0019 18.0 0.0 0.0063 16.3 0.0 1.9 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|344210752|ref|YP_004795072.1| - 0.04 14.2 0.0 0.15 12.3 0.0 2.0 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Copper-bind PF00127.20 gi|344210753|ref|YP_004795073.1| - 1.1e-14 54.7 0.0 1.5e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|344210753|ref|YP_004795073.1| - 0.0083 16.2 0.0 0.032 14.3 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|344210753|ref|YP_004795073.1| - 0.012 15.4 0.2 0.012 15.4 0.2 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TALPID3 PF15324.6 gi|344210753|ref|YP_004795073.1| - 4.5 4.8 8.5 4.7 4.8 8.5 1.0 1 0 0 1 1 1 0 Hedgehog signalling target MGC-24 PF05283.11 gi|344210753|ref|YP_004795073.1| - 7.9 6.9 7.5 12 6.3 7.5 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin PRC PF05239.16 gi|344210754|ref|YP_004795074.1| - 2.8e-11 43.3 0.0 3e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain PIN_6 PF17146.4 gi|344210755|ref|YP_004795075.1| - 2.1e-14 53.8 0.1 3.3e-14 53.1 0.1 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease HypA PF01155.19 gi|344210755|ref|YP_004795075.1| - 0.00039 20.4 0.1 0.00068 19.6 0.1 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_5 PF08745.11 gi|344210755|ref|YP_004795075.1| - 0.0011 18.4 0.8 0.0042 16.5 0.3 1.8 1 1 1 2 2 2 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|344210755|ref|YP_004795075.1| - 0.0021 18.2 1.9 0.0052 16.9 1.9 1.6 1 0 0 1 1 1 1 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|344210755|ref|YP_004795075.1| - 0.0041 17.1 2.4 0.15 12.1 0.2 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DUF4411 PF14367.6 gi|344210755|ref|YP_004795075.1| - 0.0049 16.8 0.2 0.23 11.3 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) zf-C3HC4_3 PF13920.6 gi|344210755|ref|YP_004795075.1| - 0.0098 15.7 0.5 0.014 15.2 0.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Rad50_zn_hook PF04423.14 gi|344210755|ref|YP_004795075.1| - 0.01 15.7 1.1 0.13 12.2 0.8 2.8 1 1 1 2 2 2 0 Rad50 zinc hook motif Prok-RING_1 PF14446.6 gi|344210755|ref|YP_004795075.1| - 0.026 14.4 0.3 0.048 13.6 0.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|344210755|ref|YP_004795075.1| - 0.032 14.3 1.0 0.05 13.6 1.0 1.3 1 0 0 1 1 1 0 Double zinc ribbon C1_2 PF03107.16 gi|344210755|ref|YP_004795075.1| - 0.041 14.2 0.2 0.065 13.6 0.2 1.3 1 0 0 1 1 1 0 C1 domain NOB1_Zn_bind PF08772.11 gi|344210755|ref|YP_004795075.1| - 0.042 14.0 0.4 0.09 12.9 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC_2 PF13913.6 gi|344210755|ref|YP_004795075.1| - 0.044 13.7 5.0 0.11 12.4 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Prok-RING_4 PF14447.6 gi|344210755|ref|YP_004795075.1| - 0.059 13.2 1.3 0.11 12.3 1.3 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 zinc_ribbon_15 PF17032.5 gi|344210755|ref|YP_004795075.1| - 0.063 14.0 0.1 0.088 13.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|344210755|ref|YP_004795075.1| - 0.063 13.3 0.2 0.1 12.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C2H2 PF00096.26 gi|344210755|ref|YP_004795075.1| - 0.17 12.4 2.0 9.3 6.9 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|344210755|ref|YP_004795075.1| - 0.39 11.7 1.8 31 5.8 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger RHH_1 PF01402.21 gi|344210756|ref|YP_004795076.1| - 0.0057 16.5 0.1 0.0075 16.2 0.1 1.3 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.15 gi|344210756|ref|YP_004795076.1| - 0.014 15.2 0.0 0.029 14.2 0.0 1.5 1 1 1 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF3782 PF12644.7 gi|344210756|ref|YP_004795076.1| - 0.014 15.5 0.0 0.014 15.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) DprA_WH PF17782.1 gi|344210756|ref|YP_004795076.1| - 0.018 15.2 0.4 0.02 15.0 0.4 1.1 1 0 0 1 1 1 0 DprA winged helix domain DUF3791 PF12668.7 gi|344210756|ref|YP_004795076.1| - 0.064 13.3 0.0 0.072 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) ANT PF03374.14 gi|344210756|ref|YP_004795076.1| - 0.15 12.4 0.0 0.16 12.3 0.0 1.0 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain CPBP PF02517.16 gi|344210757|ref|YP_004795077.1| - 3.8e-14 52.8 2.2 3.8e-14 52.8 2.2 3.6 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease PGI PF00342.19 gi|344210758|ref|YP_004795078.1| - 3.7e-26 91.8 0.0 6.8e-22 77.7 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase YrhC PF14143.6 gi|344210759|ref|YP_004795079.1| - 4.5 7.4 10.3 2.1 8.5 0.3 3.2 3 0 0 3 3 3 0 YrhC-like protein TatD_DNase PF01026.21 gi|344210760|ref|YP_004795080.1| - 0.078 12.3 0.3 0.11 11.9 0.3 1.2 1 0 0 1 1 1 0 TatD related DNase SecD_SecF PF02355.16 gi|344210762|ref|YP_004795082.1| - 1.1e-24 86.8 11.7 1.8e-24 86.2 11.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|344210762|ref|YP_004795082.1| - 8.8e-05 21.9 0.4 0.00033 20.0 0.1 2.2 2 0 0 2 2 2 1 SecD/SecF GG Motif DUF4309 PF14172.6 gi|344210762|ref|YP_004795082.1| - 0.12 12.4 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4309) Patched PF02460.18 gi|344210762|ref|YP_004795082.1| - 0.14 10.2 12.9 0.19 9.7 12.9 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|344210763|ref|YP_004795083.1| - 4.2e-16 58.9 3.6 8.9e-16 57.8 3.6 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|344210763|ref|YP_004795083.1| - 0.017 14.1 12.7 0.038 12.9 12.7 1.5 1 0 0 1 1 1 0 MMPL family TNFR_16_TM PF18422.1 gi|344210763|ref|YP_004795083.1| - 0.79 9.7 4.1 2 8.4 0.5 2.4 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain RNase_HII PF01351.18 gi|344210764|ref|YP_004795084.1| - 9.9e-37 126.7 0.0 1.1e-36 126.5 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII THUMP PF02926.17 gi|344210765|ref|YP_004795085.1| - 7.9e-06 26.0 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|344210765|ref|YP_004795085.1| - 0.0025 18.1 1.7 0.0046 17.3 0.5 2.0 2 0 0 2 2 2 1 DnaJ central domain MS_channel PF00924.18 gi|344210766|ref|YP_004795086.1| - 1.1e-46 159.0 0.0 2.5e-46 157.8 0.0 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel BacA PF02673.18 gi|344210767|ref|YP_004795087.1| - 2.4e-47 161.8 11.7 2.8e-47 161.6 11.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF4382 PF14321.6 gi|344210768|ref|YP_004795088.1| - 5e-24 85.1 1.5 6.1e-24 84.8 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) TAT_signal PF10518.9 gi|344210768|ref|YP_004795088.1| - 0.00031 20.5 3.4 0.00059 19.6 3.4 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|344210768|ref|YP_004795088.1| - 0.03 13.7 0.2 0.053 12.9 0.2 1.3 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CheF-arch PF04283.12 gi|344210769|ref|YP_004795089.1| - 5.8e-58 196.2 0.1 1.8e-57 194.6 0.0 1.7 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea Usp PF00582.26 gi|344210772|ref|YP_004795092.1| - 1.1e-40 139.4 1.6 1.3e-40 139.2 1.6 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|344210772|ref|YP_004795092.1| - 0.0086 16.0 0.2 1.3 8.8 0.0 2.2 1 1 1 2 2 2 2 Electron transfer flavoprotein domain baeRF_family10 PF18854.1 gi|344210772|ref|YP_004795092.1| - 0.034 14.4 1.0 0.044 14.0 0.8 1.4 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 DUF3226 PF11536.8 gi|344210772|ref|YP_004795092.1| - 0.099 12.3 0.2 1.5 8.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) SSF PF00474.17 gi|344210773|ref|YP_004795093.1| - 7.6e-51 173.2 34.4 1e-50 172.8 34.4 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.6 gi|344210774|ref|YP_004795094.1| - 2.8e-23 82.1 0.2 3.5e-23 81.8 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) AMP-binding PF00501.28 gi|344210775|ref|YP_004795095.1| - 1.6e-88 297.2 0.0 1.9e-88 296.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344210775|ref|YP_004795095.1| - 5.3e-23 81.8 0.4 1.1e-22 80.8 0.4 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|344210775|ref|YP_004795095.1| - 3.4e-14 52.5 2.3 3.4e-14 52.5 2.3 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus BAT PF15915.5 gi|344210776|ref|YP_004795096.1| - 5.6e-43 146.5 10.6 5.6e-43 146.5 10.6 2.9 3 1 1 4 4 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|344210776|ref|YP_004795096.1| - 1.2e-21 76.2 0.0 6e-21 74.0 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.6 gi|344210776|ref|YP_004795096.1| - 7e-07 29.6 2.0 0.00015 22.1 1.6 3.1 1 1 0 1 1 1 1 GAF domain Phage_integrase PF00589.22 gi|344210776|ref|YP_004795096.1| - 1.5e-06 28.2 0.0 3.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family GAF_3 PF13492.6 gi|344210776|ref|YP_004795096.1| - 4.9e-05 23.7 0.1 0.00021 21.6 0.1 2.2 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.16 gi|344210776|ref|YP_004795096.1| - 0.00038 19.9 0.0 0.0043 16.5 0.0 2.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|344210776|ref|YP_004795096.1| - 0.00084 19.4 0.4 0.012 15.6 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|344210776|ref|YP_004795096.1| - 0.0051 16.3 0.0 0.03 13.9 0.0 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.12 gi|344210776|ref|YP_004795096.1| - 0.015 15.2 0.1 0.084 12.8 0.0 2.1 2 0 0 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.12 gi|344210776|ref|YP_004795096.1| - 0.021 14.5 0.1 0.28 10.9 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|344210776|ref|YP_004795096.1| - 0.053 13.4 0.1 0.63 10.0 0.0 2.7 2 0 0 2 2 2 0 MarR family HTH_24 PF13412.6 gi|344210776|ref|YP_004795096.1| - 0.063 12.8 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344210776|ref|YP_004795096.1| - 0.071 13.0 0.3 0.27 11.1 0.2 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_22 PF13309.6 gi|344210776|ref|YP_004795096.1| - 0.095 12.8 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 HTH domain AMP-binding PF00501.28 gi|344210777|ref|YP_004795097.1| - 1.4e-82 277.6 0.2 3.3e-82 276.4 0.2 1.6 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344210777|ref|YP_004795097.1| - 4.7e-20 72.3 0.4 1e-19 71.3 0.4 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|344210777|ref|YP_004795097.1| - 1e-13 51.0 0.3 2.5e-13 49.7 0.3 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus CheF-arch PF04283.12 gi|344210778|ref|YP_004795098.1| - 6.7e-64 215.6 2.0 6.7e-64 215.6 2.0 1.4 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea PrpF PF04303.13 gi|344210778|ref|YP_004795098.1| - 0.045 12.7 0.1 0.06 12.3 0.1 1.2 1 0 0 1 1 1 0 PrpF protein NTP_transferase PF00483.23 gi|344210779|ref|YP_004795099.1| - 1.2e-22 80.7 0.0 1.5e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|344210779|ref|YP_004795099.1| - 8e-13 47.6 9.4 1.6e-10 40.3 1.4 4.1 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344210779|ref|YP_004795099.1| - 1.9e-08 33.9 6.6 2.3e-06 27.2 1.3 3.5 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|344210779|ref|YP_004795099.1| - 8.7e-07 29.4 0.1 1.3e-06 28.9 0.1 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain SIS PF01380.22 gi|344210780|ref|YP_004795100.1| - 4.5e-55 185.0 1.0 1.1e-27 96.4 0.0 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|344210780|ref|YP_004795100.1| - 2.8e-22 79.4 0.1 7.5e-22 78.0 0.1 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|344210780|ref|YP_004795100.1| - 1.2e-19 70.4 0.0 2.3e-19 69.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|344210780|ref|YP_004795100.1| - 0.024 14.7 0.1 0.21 11.6 0.0 2.5 2 0 0 2 2 2 0 SIS domain GATase_4 PF13230.6 gi|344210780|ref|YP_004795100.1| - 0.057 12.3 0.0 0.095 11.6 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II CNP_C_terminal PF17839.1 gi|344210780|ref|YP_004795100.1| - 0.075 13.8 0.0 0.14 12.9 0.0 1.3 1 0 0 1 1 1 0 C-terminal domain of cyclic nucleotide phosphodiesterase Bac_transf PF02397.16 gi|344210781|ref|YP_004795101.1| - 6e-57 192.2 0.0 1.1e-56 191.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|344210781|ref|YP_004795101.1| - 2.1e-11 44.1 0.1 5.4e-11 42.7 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1970) GPI2 PF06432.11 gi|344210781|ref|YP_004795101.1| - 0.22 10.9 0.8 0.47 9.8 0.8 1.4 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase NTP_transferase PF00483.23 gi|344210782|ref|YP_004795102.1| - 1.8e-42 145.6 0.0 2.2e-42 145.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344210782|ref|YP_004795102.1| - 5.9e-15 56.0 0.0 7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|344210782|ref|YP_004795102.1| - 1.3e-05 25.1 0.0 6.1e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase UDPG_MGDP_dh_N PF03721.14 gi|344210783|ref|YP_004795103.1| - 5.9e-53 179.2 0.0 1.8e-52 177.6 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|344210783|ref|YP_004795103.1| - 4.1e-36 123.1 0.0 7.6e-36 122.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|344210783|ref|YP_004795103.1| - 3.5e-28 98.1 0.7 1.3e-27 96.3 0.1 2.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|344210783|ref|YP_004795103.1| - 3e-05 24.0 0.0 6.5e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|344210783|ref|YP_004795103.1| - 0.00016 21.0 0.7 0.0043 16.3 0.4 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|344210783|ref|YP_004795103.1| - 0.00022 21.2 0.0 0.00053 20.0 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|344210783|ref|YP_004795103.1| - 0.0012 19.1 4.3 0.0092 16.2 0.1 3.4 4 0 0 4 4 4 1 TrkA-N domain ApbA PF02558.16 gi|344210783|ref|YP_004795103.1| - 0.0013 18.4 0.0 0.0032 17.1 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|344210783|ref|YP_004795103.1| - 0.0019 18.8 0.4 0.0088 16.6 0.3 2.3 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|344210783|ref|YP_004795103.1| - 0.0034 17.6 0.1 0.012 15.8 0.1 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|344210783|ref|YP_004795103.1| - 0.0072 15.7 0.0 0.13 11.6 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|344210783|ref|YP_004795103.1| - 0.0089 15.9 0.2 0.11 12.4 0.1 2.5 2 0 0 2 2 2 1 Rossmann-like domain XdhC_C PF13478.6 gi|344210783|ref|YP_004795103.1| - 0.031 14.8 0.2 1.1 9.8 0.0 3.0 3 0 0 3 3 3 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 gi|344210783|ref|YP_004795103.1| - 0.036 13.4 0.1 0.068 12.5 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2795 PF11387.8 gi|344210783|ref|YP_004795103.1| - 0.052 13.8 0.0 0.16 12.2 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) FAD_binding_3 PF01494.19 gi|344210783|ref|YP_004795103.1| - 0.068 12.4 0.1 0.095 11.9 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.21 gi|344210783|ref|YP_004795103.1| - 0.096 12.0 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 ThiF family NAD_binding_11 PF14833.6 gi|344210783|ref|YP_004795103.1| - 0.12 12.6 1.1 3.7 7.8 0.1 3.0 3 0 0 3 3 3 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AdoHcyase_NAD PF00670.21 gi|344210783|ref|YP_004795103.1| - 0.73 9.9 4.0 16 5.6 0.0 3.1 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF43 PF01861.16 gi|344210783|ref|YP_004795103.1| - 0.98 8.6 2.9 0.81 8.9 0.1 2.2 3 0 0 3 3 3 0 Branched-chain polyamine synthase A C-terminal domain DAO PF01266.24 gi|344210783|ref|YP_004795103.1| - 2.6 7.5 5.8 7.5 6.0 5.2 2.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase YdjM PF04307.14 gi|344210784|ref|YP_004795104.1| - 2.4e-06 27.0 7.4 1.8e-05 24.1 7.4 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4131 PF13567.6 gi|344210785|ref|YP_004795105.1| - 9.7e-05 22.1 0.9 0.01 15.5 0.1 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4131) Rep_fac-A_3 PF08661.11 gi|344210785|ref|YP_004795105.1| - 0.0028 18.0 0.0 0.0036 17.6 0.0 1.1 1 0 0 1 1 1 1 Replication factor A protein 3 tRNA_anti-codon PF01336.25 gi|344210785|ref|YP_004795105.1| - 0.026 14.5 0.3 2.6 8.1 0.1 2.3 1 1 1 2 2 2 0 OB-fold nucleic acid binding domain CcmE PF03100.15 gi|344210785|ref|YP_004795105.1| - 0.1 12.6 0.1 0.33 11.0 0.1 1.7 1 1 0 1 1 1 0 CcmE AglB_L1 PF18079.1 gi|344210786|ref|YP_004795106.1| - 2.7e-07 30.8 6.3 1.2e-05 25.5 6.3 2.6 1 1 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|344210786|ref|YP_004795106.1| - 8.4e-07 28.3 13.3 1.3e-06 27.6 13.3 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit CarboxypepD_reg PF13620.6 gi|344210786|ref|YP_004795106.1| - 0.0031 17.7 8.3 0.0088 16.3 8.3 1.8 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|344210786|ref|YP_004795106.1| - 0.0071 16.7 0.1 0.016 15.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) fn3_3 PF14686.6 gi|344210786|ref|YP_004795106.1| - 0.008 15.9 0.4 0.021 14.6 0.4 1.7 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II Big_6 PF17936.1 gi|344210786|ref|YP_004795106.1| - 0.015 15.6 2.7 0.054 13.8 2.7 2.0 1 0 0 1 1 1 0 Bacterial Ig domain CarbopepD_reg_2 PF13715.6 gi|344210786|ref|YP_004795106.1| - 0.11 12.5 1.3 0.21 11.6 0.7 1.7 2 0 0 2 2 2 0 CarboxypepD_reg-like domain Dioxygenase_C PF00775.21 gi|344210786|ref|YP_004795106.1| - 0.14 11.6 0.1 0.33 10.4 0.1 1.5 1 0 0 1 1 1 0 Dioxygenase Epimerase PF01370.21 gi|344210787|ref|YP_004795107.1| - 5.6e-41 140.6 0.0 6.9e-41 140.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344210787|ref|YP_004795107.1| - 2e-24 86.6 0.0 2.4e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|344210787|ref|YP_004795107.1| - 5.6e-24 84.7 0.1 7.1e-24 84.4 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|344210787|ref|YP_004795107.1| - 1.7e-22 79.7 0.0 2.4e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|344210787|ref|YP_004795107.1| - 8.4e-14 51.4 0.0 6.9e-13 48.4 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|344210787|ref|YP_004795107.1| - 2.7e-09 36.6 0.0 1.1e-06 28.0 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|344210787|ref|YP_004795107.1| - 5.3e-06 26.4 0.0 2.5e-05 24.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|344210787|ref|YP_004795107.1| - 0.00012 22.3 0.0 0.00031 21.0 0.0 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|344210787|ref|YP_004795107.1| - 0.0074 16.4 0.1 0.015 15.4 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NmrA PF05368.13 gi|344210787|ref|YP_004795107.1| - 0.0083 15.7 0.1 0.071 12.7 0.1 2.2 2 0 0 2 2 2 1 NmrA-like family Semialdhyde_dh PF01118.24 gi|344210787|ref|YP_004795107.1| - 0.03 14.8 0.0 0.11 12.9 0.0 1.9 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|344210787|ref|YP_004795107.1| - 0.034 14.2 0.2 0.064 13.4 0.0 1.5 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain DUF3821 PF12863.7 gi|344210787|ref|YP_004795107.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) Epimerase PF01370.21 gi|344210788|ref|YP_004795108.1| - 5.9e-47 160.1 0.0 7e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344210788|ref|YP_004795108.1| - 1.3e-31 110.2 0.0 1.7e-31 109.8 0.0 1.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|344210788|ref|YP_004795108.1| - 5.9e-25 87.8 0.0 1.6e-24 86.4 0.0 1.5 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|344210788|ref|YP_004795108.1| - 9.7e-14 51.1 0.0 1.2e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|344210788|ref|YP_004795108.1| - 9.8e-13 47.9 0.0 2.8e-12 46.4 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|344210788|ref|YP_004795108.1| - 7.2e-11 42.3 0.0 1.1e-10 41.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|344210788|ref|YP_004795108.1| - 4e-09 36.0 0.0 1.4e-06 27.7 0.1 2.5 2 1 0 2 2 2 2 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|344210788|ref|YP_004795108.1| - 0.00018 21.8 0.0 0.0004 20.7 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|344210788|ref|YP_004795108.1| - 0.00082 19.5 0.0 0.0012 18.9 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.13 gi|344210788|ref|YP_004795108.1| - 0.0012 18.4 0.0 0.047 13.2 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family KR PF08659.10 gi|344210788|ref|YP_004795108.1| - 0.028 14.4 0.1 0.11 12.4 0.1 1.9 1 1 0 1 1 1 0 KR domain Semialdhyde_dh PF01118.24 gi|344210788|ref|YP_004795108.1| - 0.075 13.5 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|344210789|ref|YP_004795109.1| - 4.7e-20 72.1 0.0 1.1e-19 70.8 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344210789|ref|YP_004795109.1| - 6.7e-14 52.0 0.1 3.1e-13 49.8 0.1 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|344210789|ref|YP_004795109.1| - 0.00025 20.3 0.0 0.0085 15.3 0.0 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|344210789|ref|YP_004795109.1| - 0.0088 15.2 0.0 0.11 11.5 0.1 2.7 3 1 0 3 3 3 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|344210789|ref|YP_004795109.1| - 0.064 12.2 0.0 0.14 11.1 0.0 1.8 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NUDIX PF00293.28 gi|344210790|ref|YP_004795110.1| - 7.9e-10 38.9 0.1 9.2e-10 38.7 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Methyltrn_RNA_2 PF04013.12 gi|344210792|ref|YP_004795112.1| - 1.7e-62 210.6 0.0 2e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase NPP1 PF05630.11 gi|344210793|ref|YP_004795113.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Necrosis inducing protein (NPP1) GCIP PF13324.6 gi|344210793|ref|YP_004795113.1| - 0.46 10.1 2.0 0.95 9.0 2.0 1.5 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting NUDIX PF00293.28 gi|344210794|ref|YP_004795114.1| - 2e-13 50.5 0.0 2.6e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain AAA_30 PF13604.6 gi|344210794|ref|YP_004795114.1| - 0.075 12.8 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF3924 PF13062.6 gi|344210795|ref|YP_004795115.1| - 0.00059 19.7 0.0 0.00082 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3924) RHH_1 PF01402.21 gi|344210795|ref|YP_004795115.1| - 0.015 15.2 2.9 0.26 11.3 2.9 2.2 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family Trans_reg_C PF00486.28 gi|344210795|ref|YP_004795115.1| - 0.096 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal TGT PF01702.18 gi|344210796|ref|YP_004795116.1| - 5.8e-77 259.2 0.0 7.3e-77 258.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|344210796|ref|YP_004795116.1| - 0.015 15.6 0.1 0.21 11.9 0.0 2.2 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Epimerase PF01370.21 gi|344210797|ref|YP_004795117.1| - 5.3e-20 71.9 0.1 3.1e-19 69.4 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344210797|ref|YP_004795117.1| - 2.4e-13 50.2 0.0 1.7e-10 40.8 0.0 2.7 1 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|344210797|ref|YP_004795117.1| - 7.7e-10 38.3 0.0 1.4e-09 37.5 0.0 1.4 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|344210797|ref|YP_004795117.1| - 8.4e-05 21.9 0.0 0.00014 21.2 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|344210797|ref|YP_004795117.1| - 0.00034 19.8 0.0 0.094 11.8 0.0 2.9 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|344210797|ref|YP_004795117.1| - 0.038 13.9 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|344210797|ref|YP_004795117.1| - 0.049 12.6 0.0 0.06 12.3 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Alginate_lyase PF05426.12 gi|344210798|ref|YP_004795118.1| - 1.1e-51 176.0 2.9 1.6e-51 175.5 2.9 1.2 1 0 0 1 1 1 1 Alginate lyase TAT_signal PF10518.9 gi|344210798|ref|YP_004795118.1| - 0.22 11.4 1.1 0.45 10.4 1.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5591 PF17884.1 gi|344210799|ref|YP_004795119.1| - 2.9e-60 202.6 0.0 4.2e-60 202.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|344210799|ref|YP_004795119.1| - 4.4e-24 84.4 0.1 2.5e-23 82.0 0.1 2.2 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|344210799|ref|YP_004795119.1| - 4.9e-15 55.5 0.0 3.9e-14 52.6 0.0 2.2 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|344210799|ref|YP_004795119.1| - 5.6e-12 45.4 0.1 4e-11 42.7 0.0 2.3 2 0 0 2 2 2 1 PUA domain VanZ PF04892.12 gi|344210800|ref|YP_004795120.1| - 3.1e-06 27.9 0.2 3.6e-06 27.6 0.2 1.1 1 0 0 1 1 1 1 VanZ like family Rhomboid PF01694.22 gi|344210800|ref|YP_004795120.1| - 0.02 14.9 2.5 0.033 14.2 2.5 1.3 1 0 0 1 1 1 0 Rhomboid family DUF2279 PF10043.9 gi|344210800|ref|YP_004795120.1| - 0.11 13.2 0.0 0.17 12.7 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) Radical_SAM PF04055.21 gi|344210801|ref|YP_004795121.1| - 0.0078 16.6 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TOBE PF03459.17 gi|344210802|ref|YP_004795122.1| - 2.8e-13 49.9 0.7 2.8e-13 49.9 0.7 4.0 3 1 0 3 3 3 1 TOBE domain HTH_1 PF00126.27 gi|344210802|ref|YP_004795122.1| - 5.1e-10 39.2 0.2 1.1e-09 38.1 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|344210802|ref|YP_004795122.1| - 0.056 13.6 0.1 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1932 PF09130.11 gi|344210802|ref|YP_004795122.1| - 0.11 12.5 0.1 0.36 10.8 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF1932) TOBE_2 PF08402.10 gi|344210802|ref|YP_004795122.1| - 0.39 10.9 6.2 0.26 11.5 0.2 3.0 2 1 1 3 3 3 0 TOBE domain PBP_like_2 PF12849.7 gi|344210803|ref|YP_004795123.1| - 5.4e-31 108.3 2.5 7.1e-31 107.9 2.5 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|344210803|ref|YP_004795123.1| - 9.1e-10 38.7 0.0 1.4e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344210803|ref|YP_004795123.1| - 0.088 12.7 3.3 0.19 11.7 1.9 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|344210804|ref|YP_004795124.1| - 1e-10 41.7 9.5 1e-10 41.7 9.5 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|344210805|ref|YP_004795125.1| - 1e-32 113.5 0.0 1.4e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210805|ref|YP_004795125.1| - 8.6e-11 42.2 0.0 2.1e-05 24.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|344210805|ref|YP_004795125.1| - 3.2e-06 27.6 0.2 1.5e-05 25.4 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|344210805|ref|YP_004795125.1| - 2.6e-05 24.0 0.2 0.0024 17.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|344210805|ref|YP_004795125.1| - 0.0001 21.8 0.0 0.0054 16.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344210805|ref|YP_004795125.1| - 0.00051 20.3 0.1 0.0013 19.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|344210805|ref|YP_004795125.1| - 0.0021 18.0 0.1 0.27 11.1 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|344210805|ref|YP_004795125.1| - 0.0052 17.0 0.4 0.0076 16.4 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|344210805|ref|YP_004795125.1| - 0.0058 16.4 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain cobW PF02492.19 gi|344210805|ref|YP_004795125.1| - 0.007 16.0 0.0 0.069 12.7 0.0 2.2 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|344210805|ref|YP_004795125.1| - 0.0095 16.2 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344210805|ref|YP_004795125.1| - 0.01 16.2 0.0 0.053 13.9 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|344210805|ref|YP_004795125.1| - 0.016 15.7 0.0 0.048 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|344210805|ref|YP_004795125.1| - 0.02 14.8 0.1 0.044 13.7 0.0 1.5 2 0 0 2 2 1 0 RsgA GTPase AAA_25 PF13481.6 gi|344210805|ref|YP_004795125.1| - 0.024 14.2 1.4 0.062 12.9 1.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|344210805|ref|YP_004795125.1| - 0.029 14.7 0.5 0.13 12.6 0.5 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|344210805|ref|YP_004795125.1| - 0.049 13.5 0.0 0.099 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|344210805|ref|YP_004795125.1| - 0.058 13.3 0.0 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|344210805|ref|YP_004795125.1| - 0.058 13.1 0.0 0.087 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|344210805|ref|YP_004795125.1| - 0.064 13.3 0.1 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|344210805|ref|YP_004795125.1| - 0.064 12.2 0.0 6.3 5.6 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|344210805|ref|YP_004795125.1| - 0.092 12.2 0.1 0.29 10.6 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.22 gi|344210805|ref|YP_004795125.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.22 gi|344210805|ref|YP_004795125.1| - 0.12 11.5 0.0 0.23 10.6 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.12 gi|344210805|ref|YP_004795125.1| - 0.13 11.5 0.0 0.43 9.8 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin PIF1 PF05970.14 gi|344210805|ref|YP_004795125.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase SbcCD_C PF13558.6 gi|344210805|ref|YP_004795125.1| - 0.14 12.4 0.1 2.9 8.2 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.6 gi|344210805|ref|YP_004795125.1| - 0.21 11.6 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|344210805|ref|YP_004795125.1| - 0.21 11.1 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|344210805|ref|YP_004795125.1| - 0.22 12.0 0.0 0.35 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344210805|ref|YP_004795125.1| - 0.29 10.8 0.0 0.41 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain GATase_5 PF13507.6 gi|344210806|ref|YP_004795126.1| - 3.5e-45 154.1 0.0 4.3e-45 153.8 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|344210806|ref|YP_004795126.1| - 7.9e-08 32.3 0.0 9.2e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|344210806|ref|YP_004795126.1| - 2.8e-07 30.3 0.0 4.5e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|344210806|ref|YP_004795126.1| - 5.6e-06 26.3 0.0 7.4e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|344210806|ref|YP_004795126.1| - 0.021 14.6 0.1 0.053 13.3 0.1 1.6 1 1 0 1 1 1 0 Peptidase C26 SNO PF01174.19 gi|344210806|ref|YP_004795126.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family LPD23 PF18838.1 gi|344210806|ref|YP_004795126.1| - 0.091 12.5 0.0 1.9 8.3 0.0 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 23 PurS PF02700.14 gi|344210807|ref|YP_004795127.1| - 1.5e-26 92.4 0.0 1.7e-26 92.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase CHAD PF05235.14 gi|344210807|ref|YP_004795127.1| - 0.012 15.6 0.9 0.015 15.3 0.9 1.0 1 0 0 1 1 1 0 CHAD domain ATP-synt_DE PF00401.20 gi|344210807|ref|YP_004795127.1| - 0.11 12.8 5.7 0.27 11.6 5.7 1.7 1 1 0 1 1 1 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GAF PF01590.26 gi|344210808|ref|YP_004795128.1| - 1.4e-07 32.2 0.0 1.8e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|344210808|ref|YP_004795128.1| - 0.0031 17.8 0.0 0.0042 17.4 0.0 1.2 1 0 0 1 1 1 1 GAF domain Formyl_trans_N PF00551.19 gi|344210809|ref|YP_004795129.1| - 4e-42 144.0 0.0 8.2e-42 143.0 0.0 1.5 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.6 gi|344210809|ref|YP_004795129.1| - 3.9e-11 42.8 0.4 1e-10 41.4 0.4 1.7 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|344210809|ref|YP_004795129.1| - 1.1e-05 25.1 2.5 1.2e-05 25.0 0.2 2.3 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|344210809|ref|YP_004795129.1| - 0.00024 21.6 0.3 0.00073 20.1 0.2 1.8 2 0 0 2 2 2 1 ACT domain SAICAR_synt PF01259.18 gi|344210810|ref|YP_004795130.1| - 1.2e-24 87.3 0.0 3.7e-24 85.7 0.0 1.6 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.6 gi|344210810|ref|YP_004795130.1| - 0.046 13.8 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) Na_Ca_ex PF01699.24 gi|344210811|ref|YP_004795131.1| - 3.3e-43 147.3 31.0 1.9e-22 79.9 9.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Radical_SAM PF04055.21 gi|344210812|ref|YP_004795132.1| - 3.7e-14 53.5 0.1 7.6e-14 52.4 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.21 gi|344210813|ref|YP_004795133.1| - 1e-14 55.2 0.1 1.8e-14 54.4 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CofC PF01983.16 gi|344210814|ref|YP_004795134.1| - 4.4e-36 124.1 0.0 4.9e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|344210814|ref|YP_004795134.1| - 0.0005 20.5 2.4 0.00093 19.6 2.4 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain CD34_antigen PF06365.12 gi|344210815|ref|YP_004795135.1| - 0.0095 15.5 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 CD34/Podocalyxin family DUF4366 PF14283.6 gi|344210815|ref|YP_004795135.1| - 0.012 15.6 0.6 0.054 13.5 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) PTS_IIA PF02255.16 gi|344210815|ref|YP_004795135.1| - 0.02 14.9 3.0 0.02 14.9 3.0 2.3 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF4398 PF14346.6 gi|344210815|ref|YP_004795135.1| - 0.064 13.9 15.7 0.66 10.6 15.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) Tad PF13400.6 gi|344210815|ref|YP_004795135.1| - 0.91 9.9 0.1 0.91 9.9 0.1 3.4 4 0 0 4 4 4 0 Putative Flp pilus-assembly TadE/G-like DUF1771 PF08590.10 gi|344210815|ref|YP_004795135.1| - 1.1 9.7 7.9 0.4 11.1 1.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1771) Tubulin PF00091.25 gi|344210816|ref|YP_004795136.1| - 2e-27 96.7 0.0 3.1e-27 96.1 0.0 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|344210816|ref|YP_004795136.1| - 0.016 14.4 0.1 0.032 13.4 0.1 1.6 1 1 0 1 1 1 0 Tubulin like NAD_binding_10 PF13460.6 gi|344210817|ref|YP_004795137.1| - 8.4e-32 110.6 0.0 1.1e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|344210817|ref|YP_004795137.1| - 1.2e-17 64.2 0.0 6.8e-17 61.7 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344210817|ref|YP_004795137.1| - 2e-14 53.2 0.0 1.6e-12 47.1 0.0 2.2 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|344210817|ref|YP_004795137.1| - 1.5e-13 50.8 0.0 1.7e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|344210817|ref|YP_004795137.1| - 2.4e-11 43.3 0.0 1.6e-05 24.1 0.0 2.5 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|344210817|ref|YP_004795137.1| - 1.3e-06 27.8 0.0 0.0056 15.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|344210817|ref|YP_004795137.1| - 1.5e-05 24.3 0.0 0.00024 20.4 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|344210817|ref|YP_004795137.1| - 4.5e-05 23.0 0.0 9.3e-05 22.0 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|344210817|ref|YP_004795137.1| - 0.00014 21.4 0.0 0.00021 20.8 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|344210817|ref|YP_004795137.1| - 0.00047 20.4 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|344210817|ref|YP_004795137.1| - 0.0015 18.8 0.0 0.0038 17.4 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.10 gi|344210817|ref|YP_004795137.1| - 0.0031 17.4 0.1 0.013 15.4 0.0 2.0 2 1 0 2 2 2 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|344210817|ref|YP_004795137.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|344210817|ref|YP_004795137.1| - 0.076 13.6 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Glyco_transf_4 PF13439.6 gi|344210817|ref|YP_004795137.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 DUF4596 PF15363.6 gi|344210817|ref|YP_004795137.1| - 0.12 12.6 0.1 0.38 11.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4596) Glyco_trans_4_4 PF13579.6 gi|344210817|ref|YP_004795137.1| - 0.13 12.7 0.0 0.35 11.3 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain 2-Hacid_dh_C PF02826.19 gi|344210817|ref|YP_004795137.1| - 0.15 11.4 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|344210817|ref|YP_004795137.1| - 0.17 12.3 0.0 0.29 11.6 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Thymidylate_kin PF02223.17 gi|344210818|ref|YP_004795138.1| - 1.4e-32 112.9 0.0 1.7e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|344210818|ref|YP_004795138.1| - 1e-05 26.0 0.0 0.00015 22.3 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|344210818|ref|YP_004795138.1| - 2.1e-05 24.7 0.1 6.6e-05 23.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|344210818|ref|YP_004795138.1| - 5.8e-05 23.0 0.0 0.00038 20.4 0.0 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase Arf PF00025.21 gi|344210818|ref|YP_004795138.1| - 0.026 14.0 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|344210818|ref|YP_004795138.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit SBF PF01758.16 gi|344210819|ref|YP_004795139.1| - 0.076 12.7 11.4 0.12 12.0 11.4 1.4 1 1 0 1 1 1 0 Sodium Bile acid symporter family DUF2070 PF09843.9 gi|344210819|ref|YP_004795139.1| - 0.22 9.8 7.1 0.23 9.7 7.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TssN PF17555.2 gi|344210819|ref|YP_004795139.1| - 1 8.7 4.7 1.3 8.3 4.7 1.0 1 0 0 1 1 1 0 Type VI secretion system, TssN YqhR PF11085.8 gi|344210819|ref|YP_004795139.1| - 1.2 9.0 9.1 1.5 8.7 9.1 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR AsnC_trans_reg PF01037.21 gi|344210820|ref|YP_004795140.1| - 3.5e-10 39.7 0.1 3.8e-10 39.6 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrkA_N PF02254.18 gi|344210821|ref|YP_004795141.1| - 1.2e-25 90.1 0.6 1.7e-25 89.5 0.6 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|344210821|ref|YP_004795141.1| - 1.5e-11 44.0 0.1 4.4e-11 42.5 0.0 1.8 2 0 0 2 2 1 1 TrkA-C domain FAD_binding_3 PF01494.19 gi|344210821|ref|YP_004795141.1| - 3.1e-06 26.7 0.2 4.4e-06 26.2 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|344210821|ref|YP_004795141.1| - 1.3e-05 24.9 0.0 2.7e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|344210821|ref|YP_004795141.1| - 1.8e-05 24.5 0.1 4.2e-05 23.2 0.1 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.24 gi|344210821|ref|YP_004795141.1| - 2.8e-05 23.9 0.7 3.3e-05 23.6 0.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|344210821|ref|YP_004795141.1| - 4.1e-05 23.6 0.3 6.2e-05 23.0 0.3 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|344210821|ref|YP_004795141.1| - 9.5e-05 22.8 0.1 0.00018 21.9 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|344210821|ref|YP_004795141.1| - 0.0002 21.0 0.1 0.00037 20.1 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|344210821|ref|YP_004795141.1| - 0.00034 21.1 0.3 0.0008 19.9 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|344210821|ref|YP_004795141.1| - 0.00036 19.9 0.1 0.00041 19.7 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|344210821|ref|YP_004795141.1| - 0.0006 20.0 0.2 0.0013 18.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|344210821|ref|YP_004795141.1| - 0.0011 18.4 0.2 0.0019 17.6 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|344210821|ref|YP_004795141.1| - 0.0031 18.0 0.0 0.0066 16.9 0.0 1.6 2 0 0 2 2 1 1 XdhC Rossmann domain NAD_binding_10 PF13460.6 gi|344210821|ref|YP_004795141.1| - 0.0031 17.4 0.4 0.0062 16.4 0.4 1.5 1 0 0 1 1 1 1 NAD(P)H-binding HI0933_like PF03486.14 gi|344210821|ref|YP_004795141.1| - 0.0037 16.0 0.1 0.0065 15.2 0.0 1.4 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|344210821|ref|YP_004795141.1| - 0.0059 15.7 0.2 0.0059 15.7 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.17 gi|344210821|ref|YP_004795141.1| - 0.0073 16.9 0.3 0.045 14.3 0.3 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|344210821|ref|YP_004795141.1| - 0.0094 16.1 0.1 0.017 15.3 0.0 1.6 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.6 gi|344210821|ref|YP_004795141.1| - 0.0099 15.2 0.0 0.017 14.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|344210821|ref|YP_004795141.1| - 0.01 15.8 0.0 0.034 14.1 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sacchrp_dh_NADP PF03435.18 gi|344210821|ref|YP_004795141.1| - 0.013 15.8 0.1 0.02 15.2 0.1 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|344210821|ref|YP_004795141.1| - 0.024 14.1 0.1 0.032 13.7 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AlaDh_PNT_C PF01262.21 gi|344210821|ref|YP_004795141.1| - 0.025 13.9 0.2 0.03 13.6 0.2 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|344210821|ref|YP_004795141.1| - 0.026 13.8 0.0 0.051 12.8 0.0 1.4 1 0 0 1 1 1 0 Thi4 family AdoHcyase_NAD PF00670.21 gi|344210821|ref|YP_004795141.1| - 0.06 13.4 0.2 0.21 11.6 0.1 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|344210821|ref|YP_004795141.1| - 0.1 13.4 0.1 0.18 12.7 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|344210821|ref|YP_004795141.1| - 0.13 12.3 1.1 11 6.0 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Methyltransf_31 PF13847.6 gi|344210821|ref|YP_004795141.1| - 0.16 11.8 0.1 0.3 10.9 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain Glyco_transf_4 PF13439.6 gi|344210821|ref|YP_004795141.1| - 0.17 11.8 0.7 0.4 10.7 0.3 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyoxalase PF00903.25 gi|344210821|ref|YP_004795141.1| - 0.19 11.9 0.1 0.5 10.6 0.1 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NmrA PF05368.13 gi|344210821|ref|YP_004795141.1| - 0.26 10.8 0.6 0.8 9.2 0.6 1.6 1 1 1 2 2 2 0 NmrA-like family AsnC_trans_reg PF01037.21 gi|344210822|ref|YP_004795142.1| - 8.9e-14 51.2 0.7 1e-13 51.1 0.7 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|344210822|ref|YP_004795142.1| - 0.04 13.9 1.2 0.047 13.7 1.2 1.1 1 0 0 1 1 1 0 GYD domain EMP70 PF02990.16 gi|344210825|ref|YP_004795145.1| - 0.11 11.2 0.1 0.12 11.0 0.1 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 ABC_tran PF00005.27 gi|344210826|ref|YP_004795146.1| - 3.1e-33 115.2 0.0 7e-33 114.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|344210826|ref|YP_004795146.1| - 3.3e-17 62.7 0.2 8.3e-17 61.5 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|344210826|ref|YP_004795146.1| - 1.5e-05 25.0 3.5 0.0025 17.7 0.1 2.6 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|344210826|ref|YP_004795146.1| - 0.002 18.4 0.9 0.015 15.6 0.8 2.3 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.19 gi|344210826|ref|YP_004795146.1| - 0.0023 17.4 0.0 0.0076 15.7 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|344210826|ref|YP_004795146.1| - 0.021 15.2 0.0 0.071 13.5 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|344210826|ref|YP_004795146.1| - 0.024 14.3 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.6 gi|344210826|ref|YP_004795146.1| - 0.037 13.6 1.1 6.9 6.2 0.1 2.6 3 0 0 3 3 3 0 AAA domain Sigma54_activat PF00158.26 gi|344210826|ref|YP_004795146.1| - 0.059 13.1 0.1 14 5.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain RsgA_GTPase PF03193.16 gi|344210826|ref|YP_004795146.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|344210826|ref|YP_004795146.1| - 0.082 13.3 1.6 0.095 13.1 0.5 1.8 2 1 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|344210826|ref|YP_004795146.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.6 gi|344210826|ref|YP_004795146.1| - 0.11 11.2 0.1 2.8 6.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|344210826|ref|YP_004795146.1| - 0.11 12.5 1.3 1.9 8.5 1.3 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) YfdX PF10938.8 gi|344210826|ref|YP_004795146.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 YfdX protein MobB PF03205.14 gi|344210826|ref|YP_004795146.1| - 0.18 11.7 0.2 0.33 10.9 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|344210826|ref|YP_004795146.1| - 0.23 11.2 0.2 0.54 10.0 0.2 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|344210827|ref|YP_004795147.1| - 5.7e-30 104.6 0.0 9.6e-30 103.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|344210827|ref|YP_004795147.1| - 2.5e-18 66.3 0.2 5.4e-18 65.3 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|344210827|ref|YP_004795147.1| - 5.2e-07 29.8 0.1 4.6e-06 26.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210827|ref|YP_004795147.1| - 8.1e-05 22.2 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344210827|ref|YP_004795147.1| - 0.019 15.3 0.5 0.19 12.0 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|344210827|ref|YP_004795147.1| - 0.046 13.5 0.1 0.089 12.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.26 gi|344210827|ref|YP_004795147.1| - 0.066 12.9 0.1 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|344210827|ref|YP_004795147.1| - 0.075 13.1 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|344210827|ref|YP_004795147.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_1 PF00528.22 gi|344210828|ref|YP_004795148.1| - 1.1e-17 64.4 13.5 1.1e-17 64.4 13.5 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|344210828|ref|YP_004795148.1| - 0.0001 22.2 0.0 0.0001 22.2 0.0 4.3 6 1 0 6 6 6 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|344210829|ref|YP_004795149.1| - 1.1e-33 116.6 11.2 1.1e-33 116.6 11.2 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|344210830|ref|YP_004795150.1| - 3.2e-65 220.5 4.6 4.9e-65 219.9 4.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|344210830|ref|YP_004795150.1| - 1.1e-07 31.4 3.6 1.8e-07 30.7 3.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.6 gi|344210831|ref|YP_004795151.1| - 0.013 16.2 1.0 0.023 15.5 0.7 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain SHS2_FTSA PF02491.20 gi|344210831|ref|YP_004795151.1| - 0.017 15.5 0.1 0.049 14.0 0.1 1.7 1 1 1 2 2 2 0 SHS2 domain inserted in FTSA MOSC_N PF03476.16 gi|344210832|ref|YP_004795152.1| - 2.5e-15 56.4 0.4 5.9e-15 55.2 0.4 1.7 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|344210832|ref|YP_004795152.1| - 1.4e-06 28.4 0.0 3.1e-06 27.2 0.0 1.6 2 0 0 2 2 2 1 MOSC domain Pro_isomerase PF00160.21 gi|344210833|ref|YP_004795153.1| - 1.7e-46 158.4 0.0 2e-46 158.2 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Abhydrolase_1 PF00561.20 gi|344210834|ref|YP_004795154.1| - 3.6e-30 105.4 0.2 5.1e-30 105.0 0.2 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|344210834|ref|YP_004795154.1| - 4e-24 86.5 10.9 4.9e-24 86.2 10.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|344210834|ref|YP_004795154.1| - 8.1e-14 51.5 0.1 1.7e-13 50.4 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 PGAP1 PF07819.13 gi|344210834|ref|YP_004795154.1| - 0.037 13.7 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein DLH PF01738.18 gi|344210834|ref|YP_004795154.1| - 0.078 12.5 0.0 0.6 9.6 0.0 2.3 2 1 0 2 2 2 0 Dienelactone hydrolase family Glycos_transf_3 PF00591.21 gi|344210835|ref|YP_004795155.1| - 8.2e-33 114.1 0.1 1.1e-32 113.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|344210835|ref|YP_004795155.1| - 3.1e-05 23.7 0.5 0.00024 20.9 0.0 2.6 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain MlaC PF05494.12 gi|344210835|ref|YP_004795155.1| - 0.092 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 MlaC protein AsnC_trans_reg2 PF17805.1 gi|344210836|ref|YP_004795156.1| - 4.3e-45 151.8 0.1 1.4e-21 76.4 0.0 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|344210836|ref|YP_004795156.1| - 2.9e-14 52.6 0.3 1e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|344210836|ref|YP_004795156.1| - 1.2e-06 28.0 0.2 0.023 14.2 0.0 3.3 3 1 0 3 3 3 2 Winged helix-turn-helix DNA-binding Response_reg PF00072.24 gi|344210837|ref|YP_004795157.1| - 4.1e-19 68.8 0.3 7.4e-19 68.0 0.3 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|344210837|ref|YP_004795157.1| - 1.7e-17 63.5 8.9 1.7e-17 63.5 8.9 1.8 2 0 0 2 2 2 1 HalX domain ABC_tran_CTD PF16326.5 gi|344210837|ref|YP_004795157.1| - 0.17 12.1 3.3 0.41 10.9 1.7 2.1 1 1 1 2 2 2 0 ABC transporter C-terminal domain Methyltransf_24 PF13578.6 gi|344210837|ref|YP_004795157.1| - 0.19 12.8 1.4 9.5 7.3 0.2 2.3 1 1 1 2 2 2 0 Methyltransferase domain GCHY-1 PF02649.14 gi|344210838|ref|YP_004795158.1| - 3e-75 253.1 0.3 3.4e-75 252.9 0.3 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 SfsA PF03749.13 gi|344210838|ref|YP_004795158.1| - 0.0093 15.9 0.0 0.022 14.7 0.0 1.6 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain DDE_3 PF13358.6 gi|344210839|ref|YP_004795159.1| - 2.9e-32 111.5 0.0 3.5e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.26 gi|344210839|ref|YP_004795159.1| - 0.00019 21.6 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain HTH_33 PF13592.6 gi|344210840|ref|YP_004795160.1| - 6.7e-18 64.1 1.5 1.1e-17 63.3 0.4 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_32 PF13565.6 gi|344210840|ref|YP_004795160.1| - 2.9e-08 34.2 0.7 6.1e-08 33.2 0.3 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_31 PF13560.6 gi|344210840|ref|YP_004795160.1| - 0.003 17.9 1.4 0.031 14.6 0.1 2.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|344210840|ref|YP_004795160.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_21 PF13276.6 gi|344210840|ref|YP_004795160.1| - 0.019 15.1 0.1 0.11 12.7 0.0 2.1 2 1 0 2 2 2 0 HTH-like domain HTH_29 PF13551.6 gi|344210840|ref|YP_004795160.1| - 0.025 14.6 0.2 0.13 12.4 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn helix DUF1778 PF08681.11 gi|344210840|ref|YP_004795160.1| - 0.087 12.8 0.2 1.4 8.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) DDT PF02791.17 gi|344210840|ref|YP_004795160.1| - 0.12 12.7 0.1 9.2 6.7 0.0 2.2 2 0 0 2 2 2 0 DDT domain TrmB PF01978.19 gi|344210841|ref|YP_004795161.1| - 1.2e-21 76.4 0.2 2.2e-21 75.5 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|344210841|ref|YP_004795161.1| - 0.00039 19.7 0.0 0.00058 19.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.14 gi|344210841|ref|YP_004795161.1| - 0.0066 16.4 0.0 0.024 14.6 0.0 1.9 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family PLDc_2 PF13091.6 gi|344210841|ref|YP_004795161.1| - 0.0099 15.8 0.1 0.087 12.7 0.0 2.4 2 1 0 2 2 2 1 PLD-like domain E2F_TDP PF02319.20 gi|344210841|ref|YP_004795161.1| - 0.035 14.1 0.0 0.095 12.8 0.0 1.7 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Med2 PF11214.8 gi|344210841|ref|YP_004795161.1| - 0.067 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Mediator complex subunit 2 Thioredox_DsbH PF03190.15 gi|344210842|ref|YP_004795162.1| - 9.4e-20 71.2 0.0 1.9e-19 70.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|344210842|ref|YP_004795162.1| - 4.8e-10 39.5 0.0 1.1e-09 38.3 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like Glyco_hydro_88 PF07470.13 gi|344210842|ref|YP_004795162.1| - 4.2e-05 22.8 0.0 0.042 12.9 0.0 2.7 1 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Thioredoxin PF00085.20 gi|344210842|ref|YP_004795162.1| - 0.00076 19.4 0.0 0.0015 18.5 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344210842|ref|YP_004795162.1| - 0.011 16.2 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain Pec_lyase PF09492.10 gi|344210842|ref|YP_004795162.1| - 0.021 14.1 0.2 0.42 9.9 0.1 2.2 2 0 0 2 2 2 0 Pectic acid lyase Glyco_hydro_127 PF07944.12 gi|344210842|ref|YP_004795162.1| - 0.1 11.1 0.2 9.1 4.6 0.1 2.2 2 0 0 2 2 2 0 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_76 PF03663.14 gi|344210842|ref|YP_004795162.1| - 0.51 9.8 3.3 5.2 6.5 3.1 2.3 2 1 0 2 2 2 0 Glycosyl hydrolase family 76 p450 PF00067.22 gi|344210843|ref|YP_004795163.1| - 2.5e-79 267.2 0.0 2.8e-79 267.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 FxsA PF04186.13 gi|344210844|ref|YP_004795164.1| - 1.1e-29 102.8 10.3 1.4e-29 102.4 10.3 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Methyltransf_25 PF13649.6 gi|344210845|ref|YP_004795165.1| - 1.8e-17 63.8 0.0 3.8e-17 62.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210845|ref|YP_004795165.1| - 5.4e-14 52.2 0.0 7.3e-14 51.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210845|ref|YP_004795165.1| - 8.5e-12 45.7 0.0 1.8e-11 44.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210845|ref|YP_004795165.1| - 8.7e-12 45.5 0.1 2.3e-11 44.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210845|ref|YP_004795165.1| - 3e-11 43.4 0.0 3.5e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344210845|ref|YP_004795165.1| - 7e-08 32.2 0.0 9.5e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|344210845|ref|YP_004795165.1| - 3.9e-05 23.1 0.0 6.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|344210845|ref|YP_004795165.1| - 4.5e-05 22.9 0.0 7e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|344210845|ref|YP_004795165.1| - 0.00011 21.8 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|344210845|ref|YP_004795165.1| - 0.00013 21.3 0.0 0.00018 20.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|344210845|ref|YP_004795165.1| - 0.013 15.0 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW N2227 PF07942.12 gi|344210845|ref|YP_004795165.1| - 0.017 14.3 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 N2227-like protein Methyltransf_17 PF12692.7 gi|344210845|ref|YP_004795165.1| - 0.13 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine methyltransferase DUF1293 PF06950.11 gi|344210845|ref|YP_004795165.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1293) HTH_10 PF04967.12 gi|344210846|ref|YP_004795166.1| - 0.019 14.7 0.1 0.49 10.2 0.0 2.5 2 1 0 2 2 2 0 HTH DNA binding domain FidL_like PF15941.5 gi|344210846|ref|YP_004795166.1| - 0.15 12.6 0.2 1.7 9.1 0.1 2.4 2 0 0 2 2 2 0 FidL-like putative membrane protein TAT_signal PF10518.9 gi|344210846|ref|YP_004795166.1| - 0.32 10.9 2.8 0.58 10.1 2.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence LMWPc PF01451.21 gi|344210847|ref|YP_004795167.1| - 1.2e-24 87.3 0.3 2.8e-24 86.1 0.3 1.5 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF4013 PF13197.6 gi|344210848|ref|YP_004795168.1| - 1e-23 84.0 15.0 1e-23 84.0 15.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Nre_N PF04894.12 gi|344210849|ref|YP_004795169.1| - 5.9e-97 324.7 0.0 7.2e-97 324.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|344210849|ref|YP_004795169.1| - 7.8e-41 138.4 0.0 1.5e-40 137.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal Nre, C-terminal LEA_3 PF03242.13 gi|344210849|ref|YP_004795169.1| - 0.13 13.0 0.1 0.44 11.3 0.1 1.8 1 0 0 1 1 1 0 Late embryogenesis abundant protein 7TM-7TMR_HD PF07698.11 gi|344210850|ref|YP_004795170.1| - 0.038 13.8 9.8 0.047 13.5 9.8 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF2721 PF11026.8 gi|344210850|ref|YP_004795170.1| - 0.93 9.4 10.3 0.18 11.7 1.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) RVT_3 PF13456.6 gi|344210851|ref|YP_004795171.1| - 7.4e-28 96.9 0.0 4.7e-27 94.2 0.0 1.9 1 1 1 2 2 2 1 Reverse transcriptase-like RNase_H PF00075.24 gi|344210851|ref|YP_004795171.1| - 2.4e-11 44.0 0.0 4.6e-11 43.1 0.0 1.4 1 1 0 1 1 1 1 RNase H ChitinaseA_N PF08329.10 gi|344210851|ref|YP_004795171.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Chitinase A, N-terminal domain Phage_int_SAM_4 PF13495.6 gi|344210852|ref|YP_004795172.1| - 0.1 13.1 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain PadR PF03551.14 gi|344210853|ref|YP_004795173.1| - 4.6e-18 64.9 0.3 6.4e-18 64.5 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|344210853|ref|YP_004795173.1| - 4.5e-05 23.8 0.1 9.8e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|344210853|ref|YP_004795173.1| - 0.0022 17.8 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) RTP PF02334.16 gi|344210853|ref|YP_004795173.1| - 0.019 15.6 0.1 0.029 15.0 0.1 1.2 1 0 0 1 1 1 0 Replication terminator protein HTH_45 PF14947.6 gi|344210853|ref|YP_004795173.1| - 0.024 14.6 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|344210853|ref|YP_004795173.1| - 0.066 13.0 0.0 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.19 gi|344210853|ref|YP_004795173.1| - 0.069 13.3 0.0 0.087 13.0 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.19 gi|344210854|ref|YP_004795174.1| - 6.7e-51 172.3 1.6 7.7e-51 172.1 1.6 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phosphodiest PF01663.22 gi|344210856|ref|YP_004795176.1| - 2.6e-59 201.6 1.0 3.1e-59 201.4 1.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.9 gi|344210856|ref|YP_004795176.1| - 0.089 13.0 0.1 0.17 12.1 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding domain Sulfatase PF00884.23 gi|344210856|ref|YP_004795176.1| - 0.42 10.0 3.8 0.74 9.1 1.2 2.3 3 0 0 3 3 3 0 Sulfatase Tubulin PF00091.25 gi|344210857|ref|YP_004795177.1| - 4.8e-27 95.4 0.1 8.4e-27 94.6 0.1 1.4 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|344210857|ref|YP_004795177.1| - 0.00028 20.2 1.5 0.00065 19.0 0.2 2.1 2 1 1 3 3 3 1 Tubulin like HEM4 PF02602.15 gi|344210857|ref|YP_004795177.1| - 0.0037 16.6 0.2 0.0062 15.9 0.2 1.3 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HTH_24 PF13412.6 gi|344210858|ref|YP_004795178.1| - 5e-07 29.2 0.0 7.2e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344210858|ref|YP_004795178.1| - 3.8e-05 23.5 0.1 5e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|344210858|ref|YP_004795178.1| - 0.00066 19.3 0.1 0.00091 18.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|344210858|ref|YP_004795178.1| - 0.002 18.2 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|344210858|ref|YP_004795178.1| - 0.0033 17.2 0.0 0.004 17.0 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|344210858|ref|YP_004795178.1| - 0.0064 16.4 0.0 0.0071 16.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|344210858|ref|YP_004795178.1| - 0.0097 15.8 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|344210858|ref|YP_004795178.1| - 0.011 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|344210858|ref|YP_004795178.1| - 0.016 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain TrmB PF01978.19 gi|344210858|ref|YP_004795178.1| - 0.025 14.5 0.1 0.032 14.1 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344210858|ref|YP_004795178.1| - 0.042 13.6 0.1 0.065 13.0 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344210858|ref|YP_004795178.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|344210858|ref|YP_004795178.1| - 0.063 13.6 0.0 0.085 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_43 PF09904.9 gi|344210858|ref|YP_004795178.1| - 0.16 11.9 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Polyketide_cyc2 PF10604.9 gi|344210859|ref|YP_004795179.1| - 5.9e-20 72.0 1.6 7.6e-20 71.6 1.6 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|344210859|ref|YP_004795179.1| - 6.5e-07 29.6 0.1 1.5e-06 28.4 0.1 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|344210859|ref|YP_004795179.1| - 0.046 13.9 0.1 0.078 13.2 0.1 1.5 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein Copper-bind PF00127.20 gi|344210860|ref|YP_004795180.1| - 1.4e-15 57.5 0.1 4e-15 56.1 0.1 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|344210860|ref|YP_004795180.1| - 0.0018 18.0 11.1 0.0018 18.0 11.1 2.7 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|344210860|ref|YP_004795180.1| - 0.037 14.2 0.0 0.059 13.5 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain AMP-binding PF00501.28 gi|344210863|ref|YP_004795183.1| - 0.0002 20.1 0.0 0.076 11.6 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme MazG PF03819.17 gi|344210864|ref|YP_004795184.1| - 7e-05 22.9 0.4 0.00029 21.0 0.4 1.9 1 1 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DnaJ_C PF01556.18 gi|344210865|ref|YP_004795185.1| - 1.6e-45 154.9 0.0 2.2e-45 154.4 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|344210865|ref|YP_004795185.1| - 3.7e-24 84.6 4.4 3.7e-24 84.6 4.4 2.2 3 0 0 3 3 3 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|344210865|ref|YP_004795185.1| - 5.8e-13 49.0 17.9 1.3e-12 47.9 17.9 1.6 1 0 0 1 1 1 1 DnaJ central domain DUF5351 PF17302.2 gi|344210865|ref|YP_004795185.1| - 0.00032 20.8 19.6 0.08 13.1 2.0 4.7 4 0 0 4 4 4 2 Family of unknown function (DUF5351) Anti-TRAP PF15777.5 gi|344210865|ref|YP_004795185.1| - 0.0019 18.1 16.2 0.023 14.6 6.6 2.6 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein A2L_zn_ribbon PF08792.10 gi|344210865|ref|YP_004795185.1| - 0.02 14.6 5.9 0.068 12.9 0.1 3.3 2 1 1 3 3 3 0 A2L zinc ribbon domain Caldesmon PF02029.15 gi|344210865|ref|YP_004795185.1| - 0.031 13.1 3.3 0.05 12.4 3.3 1.2 1 0 0 1 1 1 0 Caldesmon RPT PF13446.6 gi|344210865|ref|YP_004795185.1| - 0.035 14.0 0.1 0.075 13.0 0.1 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein HypA PF01155.19 gi|344210865|ref|YP_004795185.1| - 0.51 10.4 10.3 2.4 8.2 2.7 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GRP PF07172.11 gi|344210865|ref|YP_004795185.1| - 6.6 7.5 21.9 2 9.2 18.1 2.2 2 0 0 2 2 2 0 Glycine rich protein family DZR PF12773.7 gi|344210865|ref|YP_004795185.1| - 9 6.4 13.1 49 4.1 13.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon Pilin_N PF07790.11 gi|344210866|ref|YP_004795186.1| - 0.00039 21.3 0.2 0.0021 18.9 0.1 2.0 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal HalOD1 PF18545.1 gi|344210867|ref|YP_004795187.1| - 6.7e-19 67.9 2.2 6.7e-19 67.9 2.2 1.4 2 0 0 2 2 2 1 Halobacterial output domain 1 TrmB PF01978.19 gi|344210868|ref|YP_004795188.1| - 8.4e-19 67.2 0.1 3.1e-18 65.4 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344210868|ref|YP_004795188.1| - 0.0061 16.4 0.2 0.13 12.2 0.0 2.5 2 0 0 2 2 2 1 MarR family E2F_TDP PF02319.20 gi|344210868|ref|YP_004795188.1| - 0.011 15.8 0.0 0.049 13.7 0.0 2.1 1 1 1 2 2 2 0 E2F/DP family winged-helix DNA-binding domain DUF2250 PF10007.9 gi|344210868|ref|YP_004795188.1| - 0.048 13.8 0.0 0.26 11.4 0.0 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|344210868|ref|YP_004795188.1| - 0.057 13.1 0.0 0.18 11.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family L27_2 PF09045.10 gi|344210868|ref|YP_004795188.1| - 0.17 11.9 0.9 1 9.3 0.2 2.6 3 1 0 3 3 3 0 L27_2 HTH_27 PF13463.6 gi|344210868|ref|YP_004795188.1| - 0.19 12.2 0.7 3.3 8.3 0.0 3.2 4 0 0 4 4 4 0 Winged helix DNA-binding domain HSP70 PF00012.20 gi|344210870|ref|YP_004795190.1| - 9.9e-244 810.0 20.2 9.1e-242 803.5 20.2 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|344210870|ref|YP_004795190.1| - 1.7e-20 73.1 0.5 1.7e-20 73.1 0.5 2.5 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|344210870|ref|YP_004795190.1| - 0.001 18.4 0.2 0.0077 15.5 0.0 2.4 3 0 0 3 3 3 1 StbA protein FGGY_C PF02782.16 gi|344210870|ref|YP_004795190.1| - 0.0086 15.8 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain eIF3_subunit PF08597.10 gi|344210870|ref|YP_004795190.1| - 1.7 8.5 22.9 0.023 14.6 12.6 2.7 3 0 0 3 3 3 0 Translation initiation factor eIF3 subunit FIVAR PF07554.13 gi|344210870|ref|YP_004795190.1| - 1.8 9.4 9.9 0.068 13.9 2.0 2.9 3 0 0 3 3 3 0 FIVAR domain Cwf_Cwc_15 PF04889.12 gi|344210870|ref|YP_004795190.1| - 2.7 7.6 22.4 11 5.7 22.4 2.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF4446 PF14584.6 gi|344210870|ref|YP_004795190.1| - 5.5 7.0 6.6 1.1 9.2 2.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) GrpE PF01025.19 gi|344210871|ref|YP_004795191.1| - 2.5e-42 144.4 4.9 3.8e-42 143.8 4.9 1.2 1 0 0 1 1 1 1 GrpE OmpH PF03938.14 gi|344210871|ref|YP_004795191.1| - 3.6e-05 24.1 3.6 5.6e-05 23.5 3.6 1.4 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Fez1 PF06818.15 gi|344210871|ref|YP_004795191.1| - 0.00019 21.9 3.8 0.00027 21.5 3.8 1.3 1 0 0 1 1 1 1 Fez1 Spc7 PF08317.11 gi|344210871|ref|YP_004795191.1| - 0.00039 19.4 5.7 0.00059 18.8 5.7 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF16 PF01519.16 gi|344210871|ref|YP_004795191.1| - 0.00067 20.1 2.1 0.0012 19.3 2.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF16 PsbQ PF05757.11 gi|344210871|ref|YP_004795191.1| - 0.00068 19.4 2.9 0.0022 17.7 2.9 2.0 1 1 0 1 1 1 1 Oxygen evolving enhancer protein 3 (PsbQ) DUF641 PF04859.12 gi|344210871|ref|YP_004795191.1| - 0.00082 19.7 1.3 0.0019 18.5 1.3 1.6 1 0 0 1 1 1 1 Plant protein of unknown function (DUF641) FAM76 PF16046.5 gi|344210871|ref|YP_004795191.1| - 0.0017 17.8 4.8 0.0021 17.5 4.8 1.1 1 0 0 1 1 1 1 FAM76 protein Phage_tail_NK PF16532.5 gi|344210871|ref|YP_004795191.1| - 0.0021 17.7 0.3 0.0035 17.0 0.3 1.3 1 0 0 1 1 1 1 Sf6-type phage tail needle knob or tip of some Caudovirales Exonuc_VII_L PF02601.15 gi|344210871|ref|YP_004795191.1| - 0.0045 16.6 0.9 0.0051 16.4 0.9 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit UPF0242 PF06785.11 gi|344210871|ref|YP_004795191.1| - 0.0048 17.0 6.4 0.0057 16.8 6.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF3584 PF12128.8 gi|344210871|ref|YP_004795191.1| - 0.0048 14.5 9.8 0.0067 14.0 9.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Atg14 PF10186.9 gi|344210871|ref|YP_004795191.1| - 0.0049 16.0 3.8 0.0063 15.6 3.8 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF812 PF05667.11 gi|344210871|ref|YP_004795191.1| - 0.005 15.8 7.4 0.006 15.5 7.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Bacillus_HBL PF05791.11 gi|344210871|ref|YP_004795191.1| - 0.0072 16.2 3.0 0.014 15.2 3.0 1.5 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) Med9 PF07544.13 gi|344210871|ref|YP_004795191.1| - 0.0074 16.4 4.9 0.0074 16.4 4.9 2.8 2 1 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 FliJ PF02050.16 gi|344210871|ref|YP_004795191.1| - 0.012 15.8 8.7 0.023 14.9 8.7 1.4 1 0 0 1 1 1 0 Flagellar FliJ protein HMMR_N PF15905.5 gi|344210871|ref|YP_004795191.1| - 0.014 14.9 8.4 0.019 14.5 8.4 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal YscO PF07321.12 gi|344210871|ref|YP_004795191.1| - 0.016 15.2 11.0 0.016 15.2 11.0 1.7 2 0 0 2 2 1 0 Type III secretion protein YscO FliD_C PF07195.12 gi|344210871|ref|YP_004795191.1| - 0.018 14.5 0.7 0.029 13.8 0.7 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus TPR_MLP1_2 PF07926.12 gi|344210871|ref|YP_004795191.1| - 0.024 14.7 9.7 0.024 14.7 9.7 1.8 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|344210871|ref|YP_004795191.1| - 0.027 15.1 8.9 0.027 15.1 8.9 2.3 2 1 0 2 2 1 0 SlyX Spectrin PF00435.21 gi|344210871|ref|YP_004795191.1| - 0.03 14.8 7.5 2.1 8.9 0.2 2.6 1 1 1 2 2 2 0 Spectrin repeat Cluap1 PF10234.9 gi|344210871|ref|YP_004795191.1| - 0.036 13.5 6.4 0.041 13.3 5.6 1.4 1 1 0 1 1 1 0 Clusterin-associated protein-1 Golgin_A5 PF09787.9 gi|344210871|ref|YP_004795191.1| - 0.039 13.4 9.1 0.05 13.1 9.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 BshC PF10079.9 gi|344210871|ref|YP_004795191.1| - 0.044 12.5 2.2 0.055 12.2 2.2 1.1 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC HlyD_2 PF12700.7 gi|344210871|ref|YP_004795191.1| - 0.045 12.5 2.3 0.058 12.1 2.3 1.1 1 0 0 1 1 1 0 HlyD family secretion protein OrfB_IS605 PF01385.19 gi|344210871|ref|YP_004795191.1| - 0.053 13.7 2.6 0.084 13.1 2.6 1.3 1 0 0 1 1 1 0 Probable transposase YabA PF06156.13 gi|344210871|ref|YP_004795191.1| - 0.057 14.1 5.0 0.098 13.3 5.0 1.4 1 0 0 1 1 1 0 Initiation control protein YabA Pox_A_type_inc PF04508.12 gi|344210871|ref|YP_004795191.1| - 0.06 13.2 0.5 0.06 13.2 0.5 2.5 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat DLP_helical PF18709.1 gi|344210871|ref|YP_004795191.1| - 0.062 12.5 3.1 0.082 12.1 3.1 1.3 1 0 0 1 1 1 0 Dynamin-like helical domain FlaC_arch PF05377.11 gi|344210871|ref|YP_004795191.1| - 0.075 13.4 3.2 0.12 12.8 1.7 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Herpes_UL6 PF01763.16 gi|344210871|ref|YP_004795191.1| - 0.097 11.2 1.3 0.11 11.0 1.3 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like Macoilin PF09726.9 gi|344210871|ref|YP_004795191.1| - 0.11 11.0 6.1 0.15 10.6 6.1 1.1 1 0 0 1 1 1 0 Macoilin family DUF4806 PF16064.5 gi|344210871|ref|YP_004795191.1| - 0.13 12.6 1.3 0.23 11.8 1.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4806) VitD-bind_III PF09164.10 gi|344210871|ref|YP_004795191.1| - 0.14 12.2 1.2 0.36 10.8 1.2 1.7 1 0 0 1 1 1 0 Vitamin D binding protein, domain III Surfac_D-trimer PF09006.11 gi|344210871|ref|YP_004795191.1| - 0.14 12.0 1.7 4.3 7.3 1.7 2.3 1 1 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation TMPIT PF07851.13 gi|344210871|ref|YP_004795191.1| - 0.2 10.9 1.5 0.27 10.4 1.5 1.2 1 0 0 1 1 1 0 TMPIT-like protein Fmp27_WPPW PF10359.9 gi|344210871|ref|YP_004795191.1| - 0.31 9.9 10.2 0.21 10.4 9.1 1.3 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain NPV_P10 PF05531.12 gi|344210871|ref|YP_004795191.1| - 0.35 11.4 4.6 1.6 9.3 4.6 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF2730 PF10805.8 gi|344210871|ref|YP_004795191.1| - 0.5 10.5 3.3 1 9.5 3.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) V_ATPase_I PF01496.19 gi|344210871|ref|YP_004795191.1| - 0.57 8.0 2.0 0.59 8.0 2.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TarH PF02203.15 gi|344210871|ref|YP_004795191.1| - 0.68 9.8 5.2 7.6 6.4 4.9 2.4 1 1 1 2 2 2 0 Tar ligand binding domain homologue XhlA PF10779.9 gi|344210871|ref|YP_004795191.1| - 0.79 10.0 5.4 1 9.6 4.1 1.9 1 1 1 2 2 2 0 Haemolysin XhlA Fib_alpha PF08702.10 gi|344210871|ref|YP_004795191.1| - 0.8 9.9 6.4 2.2 8.4 6.2 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family CENP-Q PF13094.6 gi|344210871|ref|YP_004795191.1| - 0.93 9.7 16.4 0.43 10.8 14.1 1.5 1 1 1 2 2 1 0 CENP-Q, a CENPA-CAD centromere complex subunit PilJ PF13675.6 gi|344210871|ref|YP_004795191.1| - 0.98 9.5 6.0 2.4 8.2 5.0 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term FemAB PF02388.16 gi|344210871|ref|YP_004795191.1| - 1.6 7.5 5.1 2.2 7.1 5.1 1.1 1 0 0 1 1 1 0 FemAB family Phage_GPO PF05929.11 gi|344210871|ref|YP_004795191.1| - 1.7 8.2 8.3 1.2 8.7 6.3 1.6 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase PhoU PF01895.19 gi|344210871|ref|YP_004795191.1| - 1.7 9.2 10.3 1.1 9.8 5.2 2.7 2 1 1 3 3 2 0 PhoU domain Spc24 PF08286.11 gi|344210871|ref|YP_004795191.1| - 2.1 8.6 8.4 6.2 7.1 8.3 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 ANAPC_CDC26 PF10471.9 gi|344210871|ref|YP_004795191.1| - 4 8.3 13.1 1.7 9.5 8.1 2.5 2 1 0 2 2 2 0 Anaphase-promoting complex APC subunit CDC26 FUSC PF04632.12 gi|344210871|ref|YP_004795191.1| - 4.6 5.6 5.8 10 4.5 5.1 1.6 1 1 1 2 2 2 0 Fusaric acid resistance protein family DivIC PF04977.15 gi|344210871|ref|YP_004795191.1| - 5.6 6.8 9.5 3.8 7.3 1.7 2.4 1 1 1 2 2 2 0 Septum formation initiator DUF1328 PF07043.13 gi|344210872|ref|YP_004795192.1| - 5.6e-13 48.9 15.3 7.5e-13 48.5 15.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) TruB_C_2 PF16198.5 gi|344210874|ref|YP_004795194.1| - 5.4e-22 77.7 0.2 1.2e-21 76.6 0.2 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|344210874|ref|YP_004795194.1| - 8.7e-22 78.1 0.1 8.2e-13 49.0 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.12 gi|344210874|ref|YP_004795194.1| - 1.1e-07 31.8 0.0 2.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.20 gi|344210874|ref|YP_004795194.1| - 0.002 18.1 0.1 0.0041 17.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.6 gi|344210875|ref|YP_004795195.1| - 7.8e-21 75.0 1.1 9.5e-19 68.2 1.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|344210875|ref|YP_004795195.1| - 3.9e-19 69.5 0.0 5e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|344210875|ref|YP_004795195.1| - 3.6e-13 50.1 0.0 4.7e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|344210875|ref|YP_004795195.1| - 6.6e-13 48.9 2.4 5.9e-08 32.7 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_33 PF13671.6 gi|344210875|ref|YP_004795195.1| - 1.5e-10 41.4 0.1 9e-09 35.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|344210875|ref|YP_004795195.1| - 7.1e-07 29.5 0.5 4e-06 27.0 0.5 1.9 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.22 gi|344210875|ref|YP_004795195.1| - 2.4e-05 24.5 0.0 4e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_16 PF13191.6 gi|344210875|ref|YP_004795195.1| - 6.8e-05 23.3 0.0 8.8e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|344210875|ref|YP_004795195.1| - 0.00025 21.4 0.0 0.00035 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|344210875|ref|YP_004795195.1| - 0.00026 20.9 0.0 0.00039 20.4 0.0 1.2 1 0 0 1 1 1 1 NACHT domain dNK PF01712.19 gi|344210875|ref|YP_004795195.1| - 0.00042 20.2 0.0 0.0039 17.1 0.0 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_30 PF13604.6 gi|344210875|ref|YP_004795195.1| - 0.00088 19.0 0.8 0.092 12.4 0.1 2.3 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|344210875|ref|YP_004795195.1| - 0.0021 18.3 0.0 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|344210875|ref|YP_004795195.1| - 0.0023 18.3 0.0 0.0039 17.5 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|344210875|ref|YP_004795195.1| - 0.0034 17.8 0.0 0.0052 17.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|344210875|ref|YP_004795195.1| - 0.011 16.2 0.0 0.013 16.0 0.0 1.5 1 1 0 1 1 1 0 ABC transporter CoaE PF01121.20 gi|344210875|ref|YP_004795195.1| - 0.014 15.1 0.1 0.12 12.0 0.0 2.0 1 1 0 2 2 2 0 Dephospho-CoA kinase AAA_23 PF13476.6 gi|344210875|ref|YP_004795195.1| - 0.014 15.9 0.1 0.02 15.4 0.1 1.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344210875|ref|YP_004795195.1| - 0.016 14.8 0.3 0.028 14.0 0.3 1.5 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|344210875|ref|YP_004795195.1| - 0.016 14.9 0.1 0.058 13.1 0.0 2.0 2 1 1 3 3 3 0 Phosphoribulokinase / Uridine kinase family ATP_bind_1 PF03029.17 gi|344210875|ref|YP_004795195.1| - 0.038 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|344210875|ref|YP_004795195.1| - 0.039 13.4 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|344210875|ref|YP_004795195.1| - 0.04 13.1 0.0 0.06 12.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.15 gi|344210875|ref|YP_004795195.1| - 0.041 13.8 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 NTPase AAA_29 PF13555.6 gi|344210875|ref|YP_004795195.1| - 0.042 13.6 0.1 0.12 12.1 0.1 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|344210875|ref|YP_004795195.1| - 0.053 13.5 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Viral_helicase1 PF01443.18 gi|344210875|ref|YP_004795195.1| - 0.06 13.1 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase T2SSE PF00437.20 gi|344210875|ref|YP_004795195.1| - 0.067 12.2 0.1 0.1 11.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TsaE PF02367.17 gi|344210875|ref|YP_004795195.1| - 0.085 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CobU PF02283.16 gi|344210875|ref|YP_004795195.1| - 0.12 12.0 0.2 0.29 10.7 0.1 1.6 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Zeta_toxin PF06414.12 gi|344210875|ref|YP_004795195.1| - 0.13 11.5 0.0 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.6 gi|344210875|ref|YP_004795195.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|344210875|ref|YP_004795195.1| - 0.16 11.8 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF87 PF01935.17 gi|344210875|ref|YP_004795195.1| - 0.29 11.2 1.0 2.2 8.3 0.2 2.3 2 1 1 3 3 3 0 Helicase HerA, central domain EMC3_TMCO1 PF01956.16 gi|344210876|ref|YP_004795196.1| - 3.1e-46 157.2 0.5 3.8e-46 156.9 0.5 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|344210876|ref|YP_004795196.1| - 3.3e-05 23.9 0.1 5.6e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 60Kd inner membrane protein Phage_Gp23 PF10669.9 gi|344210876|ref|YP_004795196.1| - 0.013 15.8 0.2 0.021 15.2 0.2 1.2 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) SPT6_acidic PF14632.6 gi|344210876|ref|YP_004795196.1| - 0.03 14.9 4.2 0.03 14.9 4.2 2.3 2 0 0 2 2 2 0 Acidic N-terminal SPT6 DUF2897 PF11446.8 gi|344210876|ref|YP_004795196.1| - 0.27 11.1 0.8 0.91 9.5 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2897) ADK PF00406.22 gi|344210877|ref|YP_004795197.1| - 3.8e-42 143.9 0.0 5.1e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|344210877|ref|YP_004795197.1| - 3.4e-23 82.6 0.2 1.5e-22 80.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|344210877|ref|YP_004795197.1| - 2.3e-16 59.5 4.8 4.1e-16 58.7 4.8 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|344210877|ref|YP_004795197.1| - 8.5e-09 36.0 0.0 1.6e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344210877|ref|YP_004795197.1| - 8.7e-07 29.2 0.0 1.6e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|344210877|ref|YP_004795197.1| - 0.0034 17.1 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Cytidylate_kin PF02224.18 gi|344210877|ref|YP_004795197.1| - 0.016 14.9 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase Ploopntkinase3 PF18751.1 gi|344210877|ref|YP_004795197.1| - 0.032 14.2 0.0 0.092 12.6 0.0 1.8 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 zf-IS66 PF13005.7 gi|344210877|ref|YP_004795197.1| - 0.037 14.4 0.2 1.5 9.3 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 gi|344210877|ref|YP_004795197.1| - 0.047 13.2 3.9 0.11 12.0 3.9 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding AAA_28 PF13521.6 gi|344210877|ref|YP_004795197.1| - 0.051 13.8 0.0 0.15 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|344210877|ref|YP_004795197.1| - 0.061 13.0 0.0 0.19 11.4 0.0 1.8 1 1 1 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|344210877|ref|YP_004795197.1| - 0.096 12.8 1.2 0.17 12.0 1.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|344210877|ref|YP_004795197.1| - 0.1 12.6 0.8 0.23 11.5 0.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.11 gi|344210877|ref|YP_004795197.1| - 0.11 12.5 1.3 0.15 12.1 0.4 1.6 2 0 0 2 2 2 0 Zinc-ribbon containing domain HypA PF01155.19 gi|344210877|ref|YP_004795197.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SRP54 PF00448.22 gi|344210877|ref|YP_004795197.1| - 0.15 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain zf-C4_Topoisom PF01396.19 gi|344210877|ref|YP_004795197.1| - 0.16 11.8 0.2 1 9.2 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.6 gi|344210877|ref|YP_004795197.1| - 2 8.4 6.8 0.39 10.7 0.5 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 AhpC-TSA PF00578.21 gi|344210878|ref|YP_004795198.1| - 5.6e-26 90.9 0.0 6.7e-26 90.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344210878|ref|YP_004795198.1| - 3.4e-15 56.0 0.0 4e-15 55.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|344210878|ref|YP_004795198.1| - 3.8e-06 27.0 0.0 4.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme BDV_P10 PF06515.11 gi|344210878|ref|YP_004795198.1| - 0.15 12.1 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Borna disease virus P10 protein GHMP_kinases_N PF00288.26 gi|344210879|ref|YP_004795199.1| - 6.5e-12 45.5 2.6 8.1e-12 45.2 1.1 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|344210879|ref|YP_004795199.1| - 1.8e-08 34.6 0.0 8.2e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal HisKA_7TM PF16927.5 gi|344210880|ref|YP_004795200.1| - 3.2e-38 132.0 14.2 4.4e-38 131.5 14.2 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|344210880|ref|YP_004795200.1| - 2.8e-13 50.4 0.0 5.7e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344210880|ref|YP_004795200.1| - 8.3e-08 32.2 0.0 2.2e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|344210880|ref|YP_004795200.1| - 4.4e-05 23.4 1.3 0.00062 19.7 0.3 3.1 2 1 1 3 3 3 1 PAS domain HisKA_4TM PF16926.5 gi|344210880|ref|YP_004795200.1| - 9.8e-05 22.0 2.1 0.00014 21.5 0.2 2.2 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|344210880|ref|YP_004795200.1| - 0.00013 21.8 0.0 0.00031 20.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|344210880|ref|YP_004795200.1| - 0.00029 21.0 1.3 0.048 13.9 1.3 2.8 1 1 0 1 1 1 1 PAS fold PAS PF00989.25 gi|344210880|ref|YP_004795200.1| - 0.0041 17.1 0.1 0.035 14.1 0.0 2.4 1 1 0 2 2 2 1 PAS fold DUF1664 PF07889.12 gi|344210880|ref|YP_004795200.1| - 0.12 12.4 0.0 0.34 10.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) HATPase_c_5 PF14501.6 gi|344210880|ref|YP_004795200.1| - 0.16 11.9 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 GHKL domain Amino_oxidase PF01593.24 gi|344210881|ref|YP_004795201.1| - 5.8e-37 128.0 0.1 6.7e-37 127.8 0.1 1.0 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|344210881|ref|YP_004795201.1| - 2.8e-14 53.1 0.3 9.2e-14 51.4 0.3 2.0 1 1 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344210881|ref|YP_004795201.1| - 5.8e-11 42.6 4.9 3e-10 40.2 4.9 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|344210881|ref|YP_004795201.1| - 2.9e-06 26.7 1.9 0.00014 21.2 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344210881|ref|YP_004795201.1| - 7.1e-06 25.4 1.7 1.4e-05 24.4 1.7 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|344210881|ref|YP_004795201.1| - 5.2e-05 23.7 0.2 0.004 17.7 0.2 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344210881|ref|YP_004795201.1| - 0.00022 20.7 0.6 0.00053 19.4 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|344210881|ref|YP_004795201.1| - 0.001 18.2 0.1 0.0019 17.3 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|344210881|ref|YP_004795201.1| - 0.002 16.9 0.4 0.002 16.9 0.4 1.4 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|344210881|ref|YP_004795201.1| - 0.0029 16.9 0.4 0.022 14.0 0.3 2.2 2 0 0 2 2 2 1 Thi4 family FMO-like PF00743.19 gi|344210881|ref|YP_004795201.1| - 0.0097 14.4 0.0 0.014 13.9 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 gi|344210881|ref|YP_004795201.1| - 0.011 15.8 1.7 0.14 12.2 0.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|344210881|ref|YP_004795201.1| - 0.014 14.7 1.2 0.066 12.5 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|344210881|ref|YP_004795201.1| - 0.025 14.5 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|344210881|ref|YP_004795201.1| - 0.042 12.9 0.0 0.068 12.2 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|344210881|ref|YP_004795201.1| - 0.047 12.9 0.6 0.087 12.0 0.6 1.4 1 0 0 1 1 1 0 FAD binding domain F420_oxidored PF03807.17 gi|344210881|ref|YP_004795201.1| - 0.062 13.9 0.5 3.1 8.4 0.2 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_3 PF13738.6 gi|344210881|ref|YP_004795201.1| - 0.21 10.8 0.1 0.58 9.4 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|344210883|ref|YP_004795203.1| - 2.4e-47 161.6 0.1 2.9e-47 161.3 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210883|ref|YP_004795203.1| - 3.6e-11 42.9 0.0 1.4e-10 41.0 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344210883|ref|YP_004795203.1| - 2.5e-09 37.5 0.3 7.6e-06 26.4 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|344210883|ref|YP_004795203.1| - 3.4e-08 33.3 0.1 1.1e-06 28.4 0.0 3.1 4 0 0 4 4 4 1 Rubredoxin NAD+ reductase C-terminal domain HI0933_like PF03486.14 gi|344210883|ref|YP_004795203.1| - 0.00028 19.7 0.1 0.074 11.7 0.0 2.6 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|344210883|ref|YP_004795203.1| - 0.022 15.0 2.7 0.89 9.8 0.0 3.2 4 0 0 4 4 4 0 NAD(P)-binding Rossmann-like domain Reductase_C PF14759.6 gi|344210883|ref|YP_004795203.1| - 0.025 15.1 0.0 0.062 13.9 0.0 1.7 1 0 0 1 1 1 0 Reductase C-terminal Amino_oxidase PF01593.24 gi|344210883|ref|YP_004795203.1| - 0.03 13.6 0.0 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase DAO PF01266.24 gi|344210883|ref|YP_004795203.1| - 0.1 12.2 3.1 6.3 6.3 0.1 3.3 2 1 0 4 4 4 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|344210883|ref|YP_004795203.1| - 0.41 10.6 2.7 12 5.8 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|344210883|ref|YP_004795203.1| - 1.3 8.0 8.8 1.8 7.5 0.1 3.6 3 1 1 4 4 4 0 FAD binding domain GPDPase_memb PF10110.9 gi|344210886|ref|YP_004795206.1| - 0.13 11.0 13.1 0.035 12.9 10.2 1.5 2 0 0 2 2 2 0 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.11 gi|344210886|ref|YP_004795206.1| - 0.24 11.1 14.8 0.42 10.4 14.7 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0259) DUF1218 PF06749.12 gi|344210886|ref|YP_004795206.1| - 5.5 7.6 10.3 3.3 8.3 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1218) DUF4191 PF13829.6 gi|344210886|ref|YP_004795206.1| - 5.8 6.2 11.3 8.2 5.7 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF1129 PF06570.11 gi|344210886|ref|YP_004795206.1| - 9 5.7 11.6 5.1 6.5 9.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF3253 PF11625.8 gi|344210889|ref|YP_004795209.1| - 0.073 13.3 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) DUF4346 PF14251.6 gi|344210889|ref|YP_004795209.1| - 0.088 12.8 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4346) CPSase_L_D2 PF02786.17 gi|344210890|ref|YP_004795210.1| - 2e-93 311.7 0.1 6.9e-58 195.6 0.0 2.6 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|344210890|ref|YP_004795210.1| - 4.3e-27 94.9 0.0 9.5e-27 93.8 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|344210890|ref|YP_004795210.1| - 3.4e-13 49.5 0.0 5.2e-08 32.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|344210890|ref|YP_004795210.1| - 3.4e-13 49.5 0.0 2.7e-06 27.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|344210890|ref|YP_004795210.1| - 3.9e-12 46.2 0.1 6.5e-08 32.3 0.0 2.8 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|344210890|ref|YP_004795210.1| - 4.1e-09 36.7 0.3 0.00029 20.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|344210890|ref|YP_004795210.1| - 0.005 16.6 0.3 0.026 14.3 0.0 2.4 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|344210890|ref|YP_004795210.1| - 0.014 14.9 0.1 0.9 9.0 0.0 3.3 2 1 1 3 3 3 0 ATP-grasp domain B12-binding PF02310.19 gi|344210890|ref|YP_004795210.1| - 0.017 15.1 1.2 25 4.9 0.0 4.3 3 0 0 3 3 3 0 B12 binding domain PAS_4 PF08448.10 gi|344210891|ref|YP_004795211.1| - 9.2e-52 173.9 20.0 8e-22 77.6 0.2 5.9 6 0 0 6 6 6 4 PAS fold PAS_3 PF08447.12 gi|344210891|ref|YP_004795211.1| - 2.2e-35 120.8 3.0 4.9e-24 84.4 0.2 5.1 4 1 1 5 5 5 4 PAS fold PAS PF00989.25 gi|344210891|ref|YP_004795211.1| - 1.4e-25 89.5 3.2 2.2e-09 37.3 0.0 5.1 4 1 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|344210891|ref|YP_004795211.1| - 4.4e-24 84.7 1.4 1.5e-07 31.6 0.0 5.1 5 0 0 5 5 5 4 PAS domain Response_reg PF00072.24 gi|344210891|ref|YP_004795211.1| - 7.9e-21 74.3 0.0 3.3e-20 72.3 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|344210891|ref|YP_004795211.1| - 6.7e-19 67.5 0.5 0.00061 19.8 0.0 5.0 4 0 0 4 4 4 4 PAS domain HATPase_c PF02518.26 gi|344210891|ref|YP_004795211.1| - 4.3e-17 62.6 0.1 1.1e-16 61.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344210891|ref|YP_004795211.1| - 1.3e-12 47.5 1.0 7.1e-12 45.2 0.2 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|344210891|ref|YP_004795211.1| - 3.8e-11 43.4 3.5 9.4e-11 42.2 1.5 2.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|344210891|ref|YP_004795211.1| - 1.1e-07 32.3 0.2 4.3e-07 30.3 0.2 2.1 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.6 gi|344210891|ref|YP_004795211.1| - 2.5e-07 31.2 0.0 0.00015 22.3 0.0 3.2 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|344210891|ref|YP_004795211.1| - 0.00013 22.2 0.0 0.00013 22.2 0.0 2.8 4 0 0 4 4 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF PF01590.26 gi|344210891|ref|YP_004795211.1| - 0.001 19.7 0.1 0.0044 17.7 0.1 2.2 1 0 0 1 1 1 1 GAF domain Methyltransf_24 PF13578.6 gi|344210891|ref|YP_004795211.1| - 0.012 16.7 1.7 0.18 12.9 0.0 3.5 3 0 0 3 3 3 0 Methyltransferase domain PAS_7 PF12860.7 gi|344210891|ref|YP_004795211.1| - 0.012 15.7 2.5 0.18 12.0 0.1 4.1 4 2 0 4 4 4 0 PAS fold PAS_2 PF08446.11 gi|344210891|ref|YP_004795211.1| - 0.1 13.3 0.0 3.5 8.3 0.0 3.0 3 0 0 3 3 3 0 PAS fold bPH_3 PF14470.6 gi|344210892|ref|YP_004795212.1| - 0.0097 16.3 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain GATase PF00117.28 gi|344210893|ref|YP_004795213.1| - 2.3e-34 118.9 0.0 3.1e-34 118.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|344210893|ref|YP_004795213.1| - 4.3e-34 117.1 0.0 1.6e-33 115.2 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|344210893|ref|YP_004795213.1| - 2.6e-05 24.1 0.3 0.036 13.8 0.3 2.3 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|344210893|ref|YP_004795213.1| - 0.0074 16.1 0.1 0.013 15.3 0.1 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family Pro-kuma_activ PF09286.11 gi|344210893|ref|YP_004795213.1| - 0.015 15.6 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_AsnC-type PF13404.6 gi|344210894|ref|YP_004795214.1| - 9.6e-19 66.9 1.6 1.2e-17 63.5 1.2 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|344210894|ref|YP_004795214.1| - 1e-17 63.4 0.1 2.1e-17 62.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|344210894|ref|YP_004795214.1| - 3.4e-10 39.7 1.0 5.8e-10 39.0 1.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|344210894|ref|YP_004795214.1| - 6.2e-07 29.4 0.2 1.4e-06 28.3 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210894|ref|YP_004795214.1| - 4.2e-05 23.3 0.2 0.00012 21.9 0.2 1.7 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.12 gi|344210894|ref|YP_004795214.1| - 0.00015 21.3 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 NapD PF03927.13 gi|344210894|ref|YP_004795214.1| - 0.00018 21.5 1.9 0.00033 20.7 1.9 1.4 1 0 0 1 1 1 1 NapD protein MarR PF01047.22 gi|344210894|ref|YP_004795214.1| - 0.00023 21.0 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|344210894|ref|YP_004795214.1| - 0.00028 20.6 0.0 0.0005 19.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|344210894|ref|YP_004795214.1| - 0.00029 20.3 0.2 0.00049 19.6 0.2 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|344210894|ref|YP_004795214.1| - 0.00053 19.7 0.0 0.00081 19.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|344210894|ref|YP_004795214.1| - 0.0013 18.7 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|344210894|ref|YP_004795214.1| - 0.0017 18.1 0.2 0.003 17.3 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|344210894|ref|YP_004795214.1| - 0.003 16.9 1.7 0.0032 16.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|344210894|ref|YP_004795214.1| - 0.0038 17.7 0.1 0.0071 16.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|344210894|ref|YP_004795214.1| - 0.0075 16.1 0.1 0.081 12.8 0.1 2.1 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|344210894|ref|YP_004795214.1| - 0.0081 15.9 0.2 0.014 15.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344210894|ref|YP_004795214.1| - 0.011 15.7 0.1 0.021 14.8 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|344210894|ref|YP_004795214.1| - 0.012 15.6 0.1 0.021 14.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HrcA_DNA-bdg PF03444.15 gi|344210894|ref|YP_004795214.1| - 0.016 14.8 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 gi|344210894|ref|YP_004795214.1| - 0.018 14.7 0.1 0.029 14.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF746 PF05344.11 gi|344210894|ref|YP_004795214.1| - 0.02 14.7 0.2 0.081 12.8 0.0 2.0 3 0 0 3 3 2 0 Domain of Unknown Function (DUF746) PaaX PF07848.12 gi|344210894|ref|YP_004795214.1| - 0.021 15.1 0.1 0.034 14.3 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_28 PF13518.6 gi|344210894|ref|YP_004795214.1| - 0.03 14.4 0.0 0.063 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|344210894|ref|YP_004795214.1| - 0.059 13.3 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|344210894|ref|YP_004795214.1| - 0.072 13.5 0.1 0.18 12.2 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_Mga PF08280.11 gi|344210894|ref|YP_004795214.1| - 0.076 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain LexA_DNA_bind PF01726.16 gi|344210894|ref|YP_004795214.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain MIase PF02426.16 gi|344210894|ref|YP_004795214.1| - 0.14 12.3 0.3 1 9.5 0.2 2.1 1 1 1 2 2 2 0 Muconolactone delta-isomerase MS_channel PF00924.18 gi|344210895|ref|YP_004795215.1| - 1.2e-37 129.4 0.5 1.6e-37 129.1 0.5 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel YesK PF14150.6 gi|344210895|ref|YP_004795215.1| - 0.002 18.2 2.0 0.0037 17.4 2.0 1.4 1 0 0 1 1 1 1 YesK-like protein ABC_export PF16962.5 gi|344210895|ref|YP_004795215.1| - 4.8 5.5 7.1 6.4 5.1 7.1 1.1 1 0 0 1 1 1 0 Putative ABC exporter AI-2E_transport PF01594.16 gi|344210896|ref|YP_004795216.1| - 2.8e-23 82.6 30.5 3.7e-23 82.2 30.5 1.1 1 0 0 1 1 1 1 AI-2E family transporter HATPase_c PF02518.26 gi|344210897|ref|YP_004795217.1| - 4.4e-18 65.8 0.0 1.2e-17 64.4 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344210897|ref|YP_004795217.1| - 5.9e-10 39.2 0.2 1.5e-09 37.8 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|344210897|ref|YP_004795217.1| - 0.00017 21.2 1.2 0.0004 20.0 1.2 1.6 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA_4TM PF16926.5 gi|344210897|ref|YP_004795217.1| - 0.00049 19.7 0.1 0.00087 18.9 0.1 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|344210897|ref|YP_004795217.1| - 0.0013 18.6 0.0 0.0028 17.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|344210897|ref|YP_004795217.1| - 0.026 14.6 0.9 0.075 13.1 0.3 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain DEAD PF00270.29 gi|344210898|ref|YP_004795218.1| - 2e-22 79.8 0.0 2.9e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|344210898|ref|YP_004795218.1| - 1e-19 71.1 0.0 3.9e-19 69.2 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|344210898|ref|YP_004795218.1| - 3.2e-07 30.7 0.0 1.9e-06 28.2 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ABC_tran PF00005.27 gi|344210899|ref|YP_004795219.1| - 3.3e-31 108.6 0.0 3.5e-30 105.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|344210899|ref|YP_004795219.1| - 7.8e-07 29.2 0.4 0.0019 18.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210899|ref|YP_004795219.1| - 2.7e-05 23.7 0.1 0.0011 18.5 0.1 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|344210899|ref|YP_004795219.1| - 0.00054 19.9 0.0 0.52 10.2 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|344210899|ref|YP_004795219.1| - 0.00057 20.4 0.0 0.002 18.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|344210899|ref|YP_004795219.1| - 0.00074 19.2 0.2 0.085 12.6 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|344210899|ref|YP_004795219.1| - 0.0014 18.0 0.1 0.0098 15.2 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.6 gi|344210899|ref|YP_004795219.1| - 0.0017 18.7 2.0 0.011 16.1 1.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|344210899|ref|YP_004795219.1| - 0.0022 18.2 0.2 0.056 13.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|344210899|ref|YP_004795219.1| - 0.0029 17.9 0.8 0.018 15.3 0.4 2.4 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|344210899|ref|YP_004795219.1| - 0.019 14.7 0.0 0.019 14.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|344210899|ref|YP_004795219.1| - 0.034 14.6 0.0 0.091 13.2 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|344210899|ref|YP_004795219.1| - 0.062 12.8 0.0 1.4 8.4 0.1 2.5 3 0 0 3 3 3 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|344210899|ref|YP_004795219.1| - 0.076 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|344210899|ref|YP_004795219.1| - 0.085 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|344210899|ref|YP_004795219.1| - 0.15 11.8 0.2 0.68 9.7 0.0 1.9 2 0 0 2 2 2 0 MukB N-terminal AAA_18 PF13238.6 gi|344210899|ref|YP_004795219.1| - 0.2 12.2 0.0 0.49 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain NAD_binding_7 PF13241.6 gi|344210899|ref|YP_004795219.1| - 2.5 8.6 8.8 2 8.9 3.7 3.0 2 2 2 4 4 4 0 Putative NAD(P)-binding FecCD PF01032.18 gi|344210900|ref|YP_004795220.1| - 9e-89 297.5 32.5 1.1e-88 297.2 32.1 1.4 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|344210900|ref|YP_004795220.1| - 1.5e-06 27.9 13.8 1.5e-06 27.9 13.8 1.8 1 1 0 1 1 1 1 ABC 3 transport family PhrC_PhrF PF11131.8 gi|344210900|ref|YP_004795220.1| - 2.3 7.9 7.5 2.2 7.9 2.5 2.8 2 0 0 2 2 2 0 Rap-phr extracellular signalling Peripla_BP_2 PF01497.18 gi|344210901|ref|YP_004795221.1| - 3.9e-23 82.2 0.8 5.2e-23 81.8 0.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein 5-FTHF_cyc-lig PF01812.20 gi|344210902|ref|YP_004795222.1| - 5.9e-30 104.5 0.0 8.5e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family HATPase_c PF02518.26 gi|344210903|ref|YP_004795223.1| - 1.4e-17 64.2 1.3 2.3e-17 63.5 0.4 1.8 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|344210903|ref|YP_004795223.1| - 6.4e-15 55.3 0.2 1.9e-14 53.8 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.25 gi|344210903|ref|YP_004795223.1| - 2.8e-12 46.5 0.8 1.5e-11 44.1 0.2 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|344210903|ref|YP_004795223.1| - 3.5e-11 43.3 0.4 2.1e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 PAS fold GAF PF01590.26 gi|344210903|ref|YP_004795223.1| - 8.7e-10 39.3 0.0 2.4e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|344210903|ref|YP_004795223.1| - 5.4e-08 33.2 0.4 3.5e-07 30.6 0.0 2.5 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|344210903|ref|YP_004795223.1| - 3.5e-06 27.4 0.0 9.9e-06 25.9 0.0 1.8 2 0 0 2 2 1 1 GAF domain PAS_9 PF13426.7 gi|344210903|ref|YP_004795223.1| - 0.00043 20.5 0.0 0.0061 16.8 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|344210903|ref|YP_004795223.1| - 0.00073 19.5 0.9 0.0038 17.2 0.2 2.5 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.15 gi|344210903|ref|YP_004795223.1| - 0.0019 18.5 0.1 0.0048 17.1 0.1 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.25 gi|344210903|ref|YP_004795223.1| - 0.089 12.8 0.1 0.44 10.6 0.0 2.2 2 0 0 2 2 2 0 PAS fold PAS_8 PF13188.7 gi|344210903|ref|YP_004795223.1| - 0.15 12.1 0.3 0.54 10.3 0.0 2.1 2 0 0 2 2 2 0 PAS domain Pyr_redox_2 PF07992.14 gi|344210904|ref|YP_004795224.1| - 6.2e-40 137.3 0.6 1e-39 136.5 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|344210904|ref|YP_004795224.1| - 7.9e-15 55.1 0.0 2.5e-14 53.5 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|344210904|ref|YP_004795224.1| - 1e-07 32.4 2.0 2.6e-07 31.1 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|344210904|ref|YP_004795224.1| - 4.4e-05 23.7 0.1 0.23 11.7 0.1 2.5 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain NAD_binding_9 PF13454.6 gi|344210904|ref|YP_004795224.1| - 0.00015 21.8 0.1 0.28 11.1 0.0 3.2 2 1 1 3 3 3 2 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|344210904|ref|YP_004795224.1| - 0.00018 21.7 1.1 0.034 14.4 0.0 3.2 3 0 0 3 3 3 1 TrkA-N domain Pyr_redox_3 PF13738.6 gi|344210904|ref|YP_004795224.1| - 0.0019 17.5 0.3 0.023 13.9 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|344210904|ref|YP_004795224.1| - 0.0045 16.2 0.1 3.3 6.7 0.0 2.6 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|344210904|ref|YP_004795224.1| - 0.012 14.8 1.7 0.18 10.8 0.0 2.4 2 1 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|344210904|ref|YP_004795224.1| - 0.11 12.0 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|344210904|ref|YP_004795224.1| - 2 7.9 6.4 14 5.2 0.1 2.7 2 1 0 3 3 3 0 FAD dependent oxidoreductase MMPL PF03176.15 gi|344210905|ref|YP_004795225.1| - 3.2e-26 92.0 25.4 7.1e-15 54.8 1.5 2.7 3 0 0 3 3 3 2 MMPL family Patched PF02460.18 gi|344210905|ref|YP_004795225.1| - 5.3e-16 57.9 20.1 5.3e-10 38.1 8.3 2.1 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|344210905|ref|YP_004795225.1| - 1.5e-12 47.6 9.3 2.8e-06 27.2 2.3 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|344210905|ref|YP_004795225.1| - 8.7e-06 25.2 20.1 0.0025 17.2 6.5 2.4 2 0 0 2 2 2 2 Protein export membrane protein SPATA3 PF15662.5 gi|344210905|ref|YP_004795225.1| - 0.025 15.2 1.2 0.043 14.5 1.2 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 3 family CARDB PF07705.11 gi|344210906|ref|YP_004795226.1| - 7.4e-17 61.5 33.3 0.0039 17.4 0.4 6.5 5 2 1 6 6 6 5 CARDB DUF11 PF01345.18 gi|344210906|ref|YP_004795226.1| - 1.3e-11 44.7 44.3 5.4e-05 23.4 5.1 6.7 6 2 0 6 6 6 3 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|344210906|ref|YP_004795226.1| - 2.9e-11 43.5 28.5 0.0012 19.1 0.3 8.2 5 2 2 7 7 7 4 NPCBM-associated, NEW3 domain of alpha-galactosidase PHTB1_C PF14728.6 gi|344210906|ref|YP_004795226.1| - 1.2e-09 37.8 0.2 0.0015 17.7 0.0 3.9 4 0 0 4 4 4 2 PTHB1 C-terminus ASH PF15780.5 gi|344210906|ref|YP_004795226.1| - 4.6e-07 30.0 10.5 3.6 7.9 0.0 6.3 6 1 0 6 6 6 3 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Transglut_C PF00927.22 gi|344210906|ref|YP_004795226.1| - 2.2e-06 27.8 0.1 0.46 10.7 0.0 4.4 4 0 0 4 4 4 1 Transglutaminase family, C-terminal ig like domain Fn3-like PF14310.6 gi|344210906|ref|YP_004795226.1| - 8.3e-05 22.6 7.4 1 9.5 0.0 6.9 8 0 0 8 8 8 1 Fibronectin type III-like domain Ig_GlcNase PF18368.1 gi|344210906|ref|YP_004795226.1| - 0.00022 21.3 5.4 1.1 9.4 0.0 5.5 5 2 0 5 5 5 1 Exo-beta-D-glucosaminidase Ig-fold domain AP3B1_C PF14796.6 gi|344210906|ref|YP_004795226.1| - 0.011 15.9 0.3 2.1 8.6 0.0 3.2 3 0 0 3 3 3 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal N_BRCA1_IG PF16158.5 gi|344210906|ref|YP_004795226.1| - 0.019 15.7 3.9 6.3 7.6 0.1 4.1 4 1 1 5 5 5 0 Ig-like domain from next to BRCA1 gene Regulator_TrmB PF11495.8 gi|344210906|ref|YP_004795226.1| - 0.035 13.3 5.0 0.15 11.3 0.5 3.2 3 0 0 3 3 3 0 Archaeal transcriptional regulator TrmB DUF2393 PF09624.10 gi|344210906|ref|YP_004795226.1| - 0.11 12.4 0.0 6.8 6.7 0.0 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF2393) TetR_N PF00440.23 gi|344210907|ref|YP_004795227.1| - 7.6e-15 54.4 0.2 1.3e-14 53.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|344210907|ref|YP_004795227.1| - 5.4e-13 49.2 0.0 1e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_24 PF17932.1 gi|344210907|ref|YP_004795227.1| - 1.9e-05 24.9 0.1 4.4e-05 23.7 0.0 1.6 2 0 0 2 2 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|344210907|ref|YP_004795227.1| - 0.0001 22.3 0.0 0.00021 21.4 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|344210907|ref|YP_004795227.1| - 0.00012 22.3 0.0 0.00028 21.1 0.0 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344210907|ref|YP_004795227.1| - 0.0008 19.4 0.1 0.0026 17.8 0.0 1.9 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|344210907|ref|YP_004795227.1| - 0.016 15.9 0.0 0.032 14.8 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_23 PF13384.6 gi|344210907|ref|YP_004795227.1| - 0.021 14.6 0.1 0.065 13.0 0.0 1.8 3 0 0 3 3 2 0 Homeodomain-like domain UPF0122 PF04297.14 gi|344210907|ref|YP_004795227.1| - 0.024 14.9 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_40 PF14493.6 gi|344210907|ref|YP_004795227.1| - 0.029 14.8 0.0 0.084 13.3 0.0 1.9 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|344210907|ref|YP_004795227.1| - 0.035 14.2 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Mga PF05043.13 gi|344210907|ref|YP_004795227.1| - 0.08 13.5 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_20 PF12840.7 gi|344210907|ref|YP_004795227.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_4 PF08359.11 gi|344210907|ref|YP_004795227.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region HTH_psq PF05225.16 gi|344210907|ref|YP_004795227.1| - 0.18 11.6 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain TetR_C_5 PF08360.11 gi|344210907|ref|YP_004795227.1| - 0.18 12.0 0.1 0.38 10.9 0.0 1.5 2 0 0 2 2 2 0 QacR-like protein, C-terminal region Response_reg PF00072.24 gi|344210908|ref|YP_004795228.1| - 6.7e-16 58.4 0.2 1.1e-15 57.8 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|344210908|ref|YP_004795228.1| - 8.3e-14 51.7 8.7 2.4e-13 50.2 8.7 1.9 1 0 0 1 1 1 1 HalX domain PAS_8 PF13188.7 gi|344210909|ref|YP_004795229.1| - 0.15 12.1 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 PAS domain DUF3098 PF11297.8 gi|344210910|ref|YP_004795230.1| - 0.0056 16.2 0.5 0.38 10.4 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3098) DUF2065 PF09838.9 gi|344210910|ref|YP_004795230.1| - 0.012 15.6 4.2 0.052 13.6 1.4 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) NAD_kinase PF01513.21 gi|344210911|ref|YP_004795231.1| - 1.8e-38 132.4 0.3 2.5e-38 131.9 0.3 1.2 1 0 0 1 1 1 1 ATP-NAD kinase SCP_3 PF17844.1 gi|344210911|ref|YP_004795231.1| - 0.015 15.1 0.3 0.1 12.4 0.1 2.3 2 0 0 2 2 2 0 Bacterial SCP ortholog ATPase PF06745.13 gi|344210912|ref|YP_004795232.1| - 1.3e-55 188.3 0.1 1.6e-55 188.0 0.1 1.1 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|344210912|ref|YP_004795232.1| - 2.9e-06 26.8 0.0 0.0013 18.2 0.0 2.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|344210912|ref|YP_004795232.1| - 3.4e-06 26.8 0.0 5.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|344210912|ref|YP_004795232.1| - 4.1e-05 22.4 0.1 0.00011 21.0 0.1 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_24 PF13479.6 gi|344210912|ref|YP_004795232.1| - 4.5e-05 23.3 0.0 0.0001 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|344210912|ref|YP_004795232.1| - 0.00012 22.0 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RecA PF00154.21 gi|344210912|ref|YP_004795232.1| - 0.00094 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|344210912|ref|YP_004795232.1| - 0.013 14.8 0.1 0.026 13.8 0.1 1.4 1 0 0 1 1 1 0 Rad51 AAA_33 PF13671.6 gi|344210912|ref|YP_004795232.1| - 0.059 13.5 0.1 0.12 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|344210912|ref|YP_004795232.1| - 0.09 12.8 0.0 0.17 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|344210912|ref|YP_004795232.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|344210912|ref|YP_004795232.1| - 0.14 11.8 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF4013 PF13197.6 gi|344210913|ref|YP_004795233.1| - 2e-37 128.6 17.6 2e-37 128.6 17.6 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Usp PF00582.26 gi|344210914|ref|YP_004795234.1| - 1.4e-10 41.9 0.2 2e-10 41.3 0.2 1.3 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|344210914|ref|YP_004795234.1| - 0.0021 17.9 0.0 1.7 8.5 0.0 2.1 2 0 0 2 2 2 2 Electron transfer flavoprotein domain Usp PF00582.26 gi|344210915|ref|YP_004795235.1| - 1.1e-35 123.1 2.9 1.3e-35 123.0 2.9 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF87 PF01935.17 gi|344210916|ref|YP_004795236.1| - 2.5e-07 31.0 0.0 5.2e-07 30.0 0.0 1.5 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|344210916|ref|YP_004795236.1| - 4e-07 29.0 0.2 0.0005 18.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|344210916|ref|YP_004795236.1| - 0.00041 19.4 0.0 0.0092 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|344210916|ref|YP_004795236.1| - 0.03 14.6 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|344210916|ref|YP_004795236.1| - 0.038 14.0 0.0 9.3 6.2 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|344210916|ref|YP_004795236.1| - 0.04 12.8 0.0 0.062 12.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|344210916|ref|YP_004795236.1| - 0.15 11.4 0.0 0.47 9.8 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF4258 PF14076.6 gi|344210916|ref|YP_004795236.1| - 0.23 11.9 0.7 0.93 9.9 0.7 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) Exo_endo_phos PF03372.23 gi|344210917|ref|YP_004795237.1| - 4.5e-10 39.4 3.5 5.9e-10 39.1 3.5 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|344210917|ref|YP_004795237.1| - 2.3e-06 27.5 0.0 3.4e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase HTH_20 PF12840.7 gi|344210919|ref|YP_004795239.1| - 3.9e-10 39.6 0.6 6.4e-10 38.9 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344210919|ref|YP_004795239.1| - 6.7e-08 32.2 0.2 4e-07 29.7 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|344210919|ref|YP_004795239.1| - 1.2e-06 28.3 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|344210919|ref|YP_004795239.1| - 1.7e-06 27.7 0.0 3e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344210919|ref|YP_004795239.1| - 6.8e-06 25.9 0.1 1.1e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210919|ref|YP_004795239.1| - 1.2e-05 24.7 0.0 1.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FUR PF01475.19 gi|344210919|ref|YP_004795239.1| - 1.9e-05 24.8 0.0 2.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR PF01047.22 gi|344210919|ref|YP_004795239.1| - 0.00022 21.1 0.0 0.00034 20.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344210919|ref|YP_004795239.1| - 0.00029 20.7 0.0 0.00045 20.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain PadR PF03551.14 gi|344210919|ref|YP_004795239.1| - 0.0016 18.4 0.0 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DprA_WH PF17782.1 gi|344210919|ref|YP_004795239.1| - 0.0033 17.5 0.3 0.0054 16.8 0.3 1.4 1 0 0 1 1 1 1 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|344210919|ref|YP_004795239.1| - 0.0082 16.1 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344210919|ref|YP_004795239.1| - 0.027 14.3 0.1 0.053 13.4 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|344210919|ref|YP_004795239.1| - 0.041 14.0 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Ntox5 PF15543.6 gi|344210919|ref|YP_004795239.1| - 0.072 12.9 0.0 7.2 6.5 0.0 2.0 1 1 1 2 2 2 0 Bacterial toxin 5 RP-C PF03428.13 gi|344210919|ref|YP_004795239.1| - 0.082 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain MerC PF03203.14 gi|344210920|ref|YP_004795240.1| - 0.028 14.9 6.5 0.038 14.4 6.5 1.3 1 1 0 1 1 1 0 MerC mercury resistance protein MrpF_PhaF PF04066.13 gi|344210920|ref|YP_004795240.1| - 0.057 13.8 2.2 0.057 13.8 2.2 2.1 2 0 0 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2070 PF09843.9 gi|344210920|ref|YP_004795240.1| - 1.7 6.8 5.1 2 6.6 5.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) FeoB_associated PF12669.7 gi|344210920|ref|YP_004795240.1| - 2.6 8.5 4.5 23 5.5 0.3 2.5 2 1 1 3 3 3 0 FeoB-associated Cys-rich membrane protein NurA PF09376.10 gi|344210921|ref|YP_004795241.1| - 7.4e-18 65.1 0.0 1e-17 64.7 0.0 1.2 1 0 0 1 1 1 1 NurA domain AbiTii PF18864.1 gi|344210922|ref|YP_004795242.1| - 0.017 15.2 0.1 0.023 14.8 0.1 1.2 1 0 0 1 1 1 0 AbiTii iPGM_N PF06415.13 gi|344210923|ref|YP_004795243.1| - 6.9e-78 261.0 0.6 9.6e-78 260.5 0.6 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|344210923|ref|YP_004795243.1| - 3.6e-71 239.4 0.3 4.1e-71 239.2 0.3 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|344210923|ref|YP_004795243.1| - 0.00072 19.2 1.0 0.0014 18.3 0.1 1.9 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|344210923|ref|YP_004795243.1| - 0.025 14.0 0.2 0.073 12.4 0.2 2.0 1 1 0 1 1 1 0 Sulfatase CobD_Cbib PF03186.13 gi|344210923|ref|YP_004795243.1| - 0.08 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 CobD/Cbib protein PTS_2-RNA PF01885.16 gi|344210924|ref|YP_004795244.1| - 3.4e-25 89.2 0.0 4e-25 88.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Acetyltransf_1 PF00583.25 gi|344210925|ref|YP_004795245.1| - 2.7e-12 47.0 0.0 4.6e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344210925|ref|YP_004795245.1| - 1.2e-06 28.9 0.0 2.3e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344210925|ref|YP_004795245.1| - 1.9e-06 28.1 0.0 2.3e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.7 gi|344210925|ref|YP_004795245.1| - 0.001 19.1 0.0 0.0024 17.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Acetyltransf_6 PF13480.7 gi|344210925|ref|YP_004795245.1| - 0.0022 18.1 1.1 0.0063 16.7 0.6 1.9 1 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344210925|ref|YP_004795245.1| - 0.0071 16.3 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344210925|ref|YP_004795245.1| - 0.015 16.0 0.1 0.023 15.4 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344210925|ref|YP_004795245.1| - 0.12 12.5 0.0 0.96 9.6 0.0 2.3 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Pyridox_ox_2 PF12900.7 gi|344210926|ref|YP_004795246.1| - 1.3e-21 77.1 0.1 1.4e-21 77.0 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344210926|ref|YP_004795246.1| - 0.0038 17.4 0.0 0.005 17.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase QRPTase_C PF01729.19 gi|344210927|ref|YP_004795247.1| - 1.4e-56 190.9 0.8 1.8e-56 190.5 0.8 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|344210927|ref|YP_004795247.1| - 6.5e-21 74.2 0.0 1.2e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain FAD_binding_2 PF00890.24 gi|344210928|ref|YP_004795248.1| - 3.3e-81 273.5 4.3 4e-81 273.2 4.3 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344210928|ref|YP_004795248.1| - 9e-12 44.8 0.1 1e-06 28.2 0.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|344210928|ref|YP_004795248.1| - 1e-11 45.0 1.8 1.4e-10 41.4 0.3 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|344210928|ref|YP_004795248.1| - 6.1e-07 29.1 4.9 1.9e-06 27.5 4.2 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|344210928|ref|YP_004795248.1| - 9.7e-07 28.2 0.2 0.00011 21.5 0.5 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Succ_DH_flav_C PF02910.20 gi|344210928|ref|YP_004795248.1| - 1.5e-05 25.0 0.2 3.6e-05 23.8 0.2 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.6 gi|344210928|ref|YP_004795248.1| - 0.00032 20.9 0.5 0.00074 19.7 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|344210928|ref|YP_004795248.1| - 0.00088 18.1 0.2 0.0084 14.8 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein DUF2398 PF09661.10 gi|344210928|ref|YP_004795248.1| - 0.0035 16.6 0.3 0.018 14.3 0.2 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2398) AlaDh_PNT_C PF01262.21 gi|344210928|ref|YP_004795248.1| - 0.0061 15.9 0.1 0.011 15.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|344210928|ref|YP_004795248.1| - 0.012 14.8 0.1 0.024 13.9 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|344210928|ref|YP_004795248.1| - 0.018 15.6 0.2 0.089 13.4 0.1 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|344210928|ref|YP_004795248.1| - 0.02 14.1 0.1 0.035 13.3 0.1 1.4 1 0 0 1 1 1 0 Thi4 family DXP_reductoisom PF02670.16 gi|344210928|ref|YP_004795248.1| - 0.11 13.2 0.2 0.32 11.7 0.2 1.7 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NadA PF02445.16 gi|344210929|ref|YP_004795249.1| - 1.4e-102 342.9 0.0 1.6e-102 342.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Thioredox_DsbH PF03190.15 gi|344210929|ref|YP_004795249.1| - 0.1 12.5 0.1 0.21 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF255 Arteri_nsp7a PF16749.5 gi|344210929|ref|YP_004795249.1| - 0.25 11.5 0.8 78 3.5 0.1 3.6 3 1 1 4 4 4 0 Arterivirus nonstructural protein 7 alpha Amidohydro_3 PF07969.11 gi|344210930|ref|YP_004795250.1| - 2e-79 268.3 15.1 2.3e-79 268.1 15.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|344210930|ref|YP_004795250.1| - 8.2e-15 54.9 0.3 5.3e-10 39.1 0.1 3.2 2 1 0 2 2 2 2 Amidohydrolase family HMG-CoA_red PF00368.18 gi|344210931|ref|YP_004795251.1| - 4.7e-128 427.3 8.0 5.3e-128 427.1 8.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase LPD22 PF18834.1 gi|344210931|ref|YP_004795251.1| - 0.1 12.8 1.0 0.21 11.8 0.2 1.9 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 7TMR-DISM_7TM PF07695.11 gi|344210932|ref|YP_004795252.1| - 0.013 15.4 5.9 0.015 15.2 5.9 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling Promethin PF16015.5 gi|344210932|ref|YP_004795252.1| - 0.78 9.7 18.3 0.046 13.7 12.5 1.7 1 1 1 2 2 2 0 Promethin DUF3784 PF12650.7 gi|344210932|ref|YP_004795252.1| - 2.4 8.4 7.4 7.9 6.8 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3784) zf-UDP PF14569.6 gi|344210933|ref|YP_004795253.1| - 0.018 15.1 1.2 0.034 14.3 1.2 1.5 1 0 0 1 1 1 0 Zinc-binding RING-finger DUF1922 PF09082.10 gi|344210933|ref|YP_004795253.1| - 0.083 13.2 0.4 0.16 12.3 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) DUF4776 PF16003.5 gi|344210933|ref|YP_004795253.1| - 0.089 11.8 0.2 0.09 11.8 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) Rrf2 PF02082.20 gi|344210933|ref|YP_004795253.1| - 0.13 12.6 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HypA PF01155.19 gi|344210933|ref|YP_004795253.1| - 0.17 11.9 0.9 0.28 11.2 0.9 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cupin_2 PF07883.11 gi|344210934|ref|YP_004795254.1| - 2.7e-22 78.2 3.8 3.9e-22 77.7 3.8 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|344210934|ref|YP_004795254.1| - 9.4e-13 48.2 0.9 1.3e-12 47.8 0.9 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|344210934|ref|YP_004795254.1| - 2.1e-07 30.6 0.2 2.7e-07 30.3 0.2 1.1 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|344210934|ref|YP_004795254.1| - 5.4e-07 29.7 0.0 7.2e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|344210934|ref|YP_004795254.1| - 1.1e-05 25.3 0.0 1.4e-05 25.1 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ectoine_synth PF06339.12 gi|344210934|ref|YP_004795254.1| - 0.00031 20.9 0.0 0.00037 20.7 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|344210934|ref|YP_004795254.1| - 0.00083 19.0 0.1 0.0011 18.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|344210934|ref|YP_004795254.1| - 0.0013 18.4 0.2 0.0015 18.2 0.2 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_7 PF12973.7 gi|344210934|ref|YP_004795254.1| - 0.0039 17.1 0.4 0.005 16.7 0.4 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain AraC_N PF06719.13 gi|344210934|ref|YP_004795254.1| - 0.0064 16.1 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 AraC-type transcriptional regulator N-terminus DMSP_lyase PF16867.5 gi|344210934|ref|YP_004795254.1| - 0.0089 15.7 0.8 0.012 15.3 0.8 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase ARD PF03079.14 gi|344210934|ref|YP_004795254.1| - 0.009 16.2 0.1 0.011 15.9 0.1 1.1 1 0 0 1 1 1 1 ARD/ARD' family Cupin_6 PF12852.7 gi|344210934|ref|YP_004795254.1| - 0.014 15.1 0.1 0.016 15.0 0.1 1.1 1 0 0 1 1 1 0 Cupin Auxin_BP PF02041.16 gi|344210934|ref|YP_004795254.1| - 0.086 12.5 0.1 0.13 11.9 0.1 1.5 1 1 0 1 1 1 0 Auxin binding protein ATP1G1_PLM_MAT8 PF02038.16 gi|344210937|ref|YP_004795257.1| - 0.056 12.9 0.8 0.092 12.2 0.1 1.8 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Iso_dh PF00180.20 gi|344210938|ref|YP_004795258.1| - 9.3e-111 370.3 0.0 1.3e-110 369.9 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.18 gi|344210939|ref|YP_004795259.1| - 1.3e-56 191.9 11.5 1.5e-56 191.7 11.5 1.0 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.24 gi|344210940|ref|YP_004795260.1| - 8.7e-43 146.4 0.6 1.2e-42 146.0 0.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Nudix_N PF12535.8 gi|344210940|ref|YP_004795260.1| - 0.17 11.5 0.2 0.4 10.3 0.2 1.5 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal RecR PF02132.15 gi|344210941|ref|YP_004795261.1| - 0.039 13.5 1.5 1.3 8.7 0.2 2.2 2 0 0 2 2 2 0 RecR protein CpXC PF14353.6 gi|344210941|ref|YP_004795261.1| - 0.072 13.1 1.4 0.091 12.8 1.4 1.1 1 0 0 1 1 1 0 CpXC protein HIT PF01230.23 gi|344210942|ref|YP_004795262.1| - 2.3e-12 47.5 0.0 5.4e-12 46.3 0.0 1.5 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|344210942|ref|YP_004795262.1| - 0.00016 22.1 0.0 0.00029 21.3 0.0 1.4 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|344210942|ref|YP_004795262.1| - 0.00079 19.3 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 TerD PF02342.18 gi|344210942|ref|YP_004795262.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 TerD domain Rieske PF00355.26 gi|344210943|ref|YP_004795263.1| - 2.6e-05 24.0 0.0 4.6e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cation_efflux PF01545.21 gi|344210944|ref|YP_004795264.1| - 2.1e-39 135.4 5.0 2.6e-39 135.0 5.0 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|344210944|ref|YP_004795264.1| - 2.4e-18 66.0 2.4 3.9e-18 65.3 2.4 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DoxX PF07681.12 gi|344210945|ref|YP_004795265.1| - 1.1e-08 35.6 2.1 1.5e-08 35.1 2.1 1.2 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.11 gi|344210945|ref|YP_004795265.1| - 0.00016 21.9 0.0 0.026 14.7 0.0 2.1 1 1 1 2 2 2 2 HR-like lesion-inducing TPR_8 PF13181.6 gi|344210945|ref|YP_004795265.1| - 0.53 10.6 2.2 29 5.2 0.1 3.1 2 1 1 3 3 3 0 Tetratricopeptide repeat Radical_SAM PF04055.21 gi|344210946|ref|YP_004795266.1| - 2e-21 77.1 0.0 3.7e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|344210946|ref|YP_004795266.1| - 1.7e-19 69.7 0.1 3.4e-19 68.7 0.1 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|344210946|ref|YP_004795266.1| - 7.8e-06 25.8 0.2 1.6e-05 24.8 0.2 1.6 1 0 0 1 1 1 1 TRAM domain DUF63 PF01889.17 gi|344210948|ref|YP_004795268.1| - 1.2e-19 71.6 14.0 1.7e-19 71.1 14.0 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 LapA_dom PF06305.11 gi|344210950|ref|YP_004795270.1| - 0.022 14.5 0.0 0.022 14.5 0.0 3.3 4 0 0 4 4 4 0 Lipopolysaccharide assembly protein A domain Phage_holin_2_1 PF04971.12 gi|344210950|ref|YP_004795270.1| - 0.38 10.8 0.2 0.38 10.8 0.2 2.1 2 0 0 2 2 2 0 Bacteriophage P21 holin S DUF2207 PF09972.9 gi|344210950|ref|YP_004795270.1| - 7.4 5.2 5.6 2.8 6.6 3.7 1.5 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) FUSC_2 PF13515.6 gi|344210951|ref|YP_004795271.1| - 0.023 14.8 0.7 0.024 14.8 0.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein-like ATPase_gene1 PF09527.10 gi|344210951|ref|YP_004795271.1| - 0.35 11.0 5.5 2.1 8.6 5.9 1.9 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter PNP_UDP_1 PF01048.20 gi|344210952|ref|YP_004795272.1| - 4.3e-45 153.8 1.9 4.9e-45 153.6 1.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3568 PF12092.8 gi|344210952|ref|YP_004795272.1| - 0.12 12.4 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3568) HPP PF04982.13 gi|344210953|ref|YP_004795273.1| - 6.6e-16 58.6 2.0 1.4e-15 57.5 2.0 1.6 1 0 0 1 1 1 1 HPP family Usp PF00582.26 gi|344210953|ref|YP_004795273.1| - 3.1e-05 24.5 1.6 0.014 15.9 0.3 3.9 2 2 0 3 3 3 1 Universal stress protein family UPF0444 PF15475.6 gi|344210953|ref|YP_004795273.1| - 0.029 14.6 0.4 0.061 13.6 0.4 1.4 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 TrkA_N PF02254.18 gi|344210954|ref|YP_004795274.1| - 1.5e-27 96.1 1.7 2.3e-27 95.5 1.7 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|344210954|ref|YP_004795274.1| - 4.1e-14 52.3 4.8 1.5e-13 50.4 2.0 2.5 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|344210954|ref|YP_004795274.1| - 0.00019 20.8 0.0 0.00028 20.2 0.0 1.2 1 0 0 1 1 1 1 Ion transport protein NAD_binding_7 PF13241.6 gi|344210954|ref|YP_004795274.1| - 0.0012 19.3 0.3 0.0034 17.8 0.2 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding tRNA-synt_2_TM PF16995.5 gi|344210954|ref|YP_004795274.1| - 0.012 15.4 5.7 0.033 13.9 5.5 1.8 1 1 1 2 2 2 0 Transmembrane region of lysyl-tRNA synthetase PsbT PF01405.17 gi|344210954|ref|YP_004795274.1| - 3.2 7.6 4.7 16 5.4 0.3 2.6 2 0 0 2 2 2 0 Photosystem II reaction centre T protein VKOR PF07884.14 gi|344210954|ref|YP_004795274.1| - 9.4 6.4 7.5 4.7 7.4 0.5 2.5 2 1 0 2 2 2 0 Vitamin K epoxide reductase family TrkA_C PF02080.21 gi|344210955|ref|YP_004795275.1| - 2e-13 49.9 0.4 6.1e-12 45.2 0.1 2.7 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.21 gi|344210956|ref|YP_004795276.1| - 2.6e-05 24.0 2.3 3.5e-05 23.5 0.0 2.3 3 0 0 3 3 3 1 TrkA-C domain ThiS PF02597.20 gi|344210957|ref|YP_004795277.1| - 3.9e-11 43.4 0.2 4.7e-11 43.2 0.2 1.1 1 0 0 1 1 1 1 ThiS family MR_MLE_C PF13378.6 gi|344210957|ref|YP_004795277.1| - 0.017 14.7 1.4 0.02 14.5 1.4 1.0 1 0 0 1 1 1 0 Enolase C-terminal domain-like DUF1902 PF08972.11 gi|344210957|ref|YP_004795277.1| - 0.041 13.9 0.4 0.058 13.4 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1902) DUF5061 PF16587.5 gi|344210957|ref|YP_004795277.1| - 0.067 13.3 0.0 0.09 12.8 0.0 1.3 1 0 0 1 1 1 0 17 kDa common-antigen outer membrane protein STN PF07660.14 gi|344210957|ref|YP_004795277.1| - 0.22 11.4 0.0 0.4 10.5 0.0 1.4 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain HisKA_7TM PF16927.5 gi|344210958|ref|YP_004795278.1| - 7.3e-16 58.9 14.3 1.1e-15 58.3 14.3 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|344210958|ref|YP_004795278.1| - 0.00073 19.5 0.3 0.0044 17.0 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|344210958|ref|YP_004795278.1| - 0.014 15.0 0.2 0.04 13.6 0.2 1.8 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acetyltransf_1 PF00583.25 gi|344210959|ref|YP_004795279.1| - 1.6e-09 38.0 0.0 3.5e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.7 gi|344210959|ref|YP_004795279.1| - 2e-07 31.3 5.1 5.5e-07 29.8 1.4 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344210959|ref|YP_004795279.1| - 9.4e-05 22.8 0.0 0.00018 21.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344210959|ref|YP_004795279.1| - 0.00028 20.8 0.0 0.00051 20.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|344210959|ref|YP_004795279.1| - 0.009 15.7 0.1 0.013 15.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4821) Acetyltransf_3 PF13302.7 gi|344210959|ref|YP_004795279.1| - 0.013 16.1 0.7 0.029 15.1 0.3 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344210959|ref|YP_004795279.1| - 0.019 15.1 0.0 0.043 13.9 0.0 1.6 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Asparaginase PF00710.20 gi|344210960|ref|YP_004795280.1| - 1e-60 204.6 0.8 2.1e-60 203.6 0.8 1.5 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|344210960|ref|YP_004795280.1| - 5.8e-27 94.2 0.0 5.1e-26 91.1 0.0 2.3 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|344210960|ref|YP_004795280.1| - 2e-16 59.0 0.0 3.5e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain DUF2530 PF10745.9 gi|344210962|ref|YP_004795282.1| - 0.012 15.8 0.7 1.4 9.2 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) DUF2244 PF10003.9 gi|344210962|ref|YP_004795282.1| - 3.8 7.2 4.6 1 9.0 0.5 1.9 1 1 1 2 2 2 0 Integral membrane protein (DUF2244) Na_H_antiporter PF03553.14 gi|344210963|ref|YP_004795283.1| - 1.8e-69 234.3 30.1 1.3e-67 228.2 14.2 2.5 2 1 1 3 3 3 2 Na+/H+ antiporter family DUF2830 PF11125.8 gi|344210963|ref|YP_004795283.1| - 0.15 12.0 0.6 0.49 10.4 0.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2830) Cytochrom_B_C PF00032.17 gi|344210963|ref|YP_004795283.1| - 2.7 8.3 6.4 0.94 9.8 0.4 3.1 3 1 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD UPF0767 PF15990.5 gi|344210963|ref|YP_004795283.1| - 4.6 7.4 5.8 14 5.9 0.2 3.1 3 0 0 3 3 3 0 UPF0767 family CcmD PF04995.14 gi|344210963|ref|YP_004795283.1| - 5.3 7.2 7.1 1.2 9.3 1.1 3.1 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) HTH_5 PF01022.20 gi|344210964|ref|YP_004795284.1| - 6.4e-16 57.9 0.2 1.3e-14 53.7 0.0 2.9 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|344210964|ref|YP_004795284.1| - 1.9e-12 47.0 0.2 3e-10 40.0 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|344210964|ref|YP_004795284.1| - 1.5e-10 40.8 0.0 4.6e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344210964|ref|YP_004795284.1| - 1.2e-09 37.9 0.7 4.2e-07 29.8 0.1 2.7 3 0 0 3 3 3 1 MarR family MarR PF01047.22 gi|344210964|ref|YP_004795284.1| - 3.2e-07 30.1 0.0 9.7e-06 25.4 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|344210964|ref|YP_004795284.1| - 6.9e-06 26.0 0.0 0.0012 18.7 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|344210964|ref|YP_004795284.1| - 8.8e-06 25.2 0.1 0.00012 21.6 0.1 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|344210964|ref|YP_004795284.1| - 9.4e-06 25.7 0.0 0.00035 20.7 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|344210964|ref|YP_004795284.1| - 1.7e-05 25.1 0.0 0.006 16.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.21 gi|344210964|ref|YP_004795284.1| - 5.1e-05 22.9 0.1 0.087 12.5 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|344210964|ref|YP_004795284.1| - 0.0001 22.2 0.0 0.00022 21.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain DprA_WH PF17782.1 gi|344210964|ref|YP_004795284.1| - 0.00016 21.7 1.3 0.0038 17.3 0.0 2.7 2 1 0 2 2 2 1 DprA winged helix domain PadR PF03551.14 gi|344210964|ref|YP_004795284.1| - 0.00022 21.1 0.8 0.0058 16.6 0.1 3.4 3 2 1 4 4 4 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|344210964|ref|YP_004795284.1| - 0.00084 19.8 0.1 0.056 14.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|344210964|ref|YP_004795284.1| - 0.0033 17.2 0.2 0.094 12.5 0.0 2.7 3 0 0 3 3 2 1 LexA DNA binding domain HTH_CodY PF08222.11 gi|344210964|ref|YP_004795284.1| - 0.0054 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_IclR PF09339.10 gi|344210964|ref|YP_004795284.1| - 0.015 15.1 0.2 0.074 12.9 0.0 2.4 2 1 0 2 2 2 0 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|344210964|ref|YP_004795284.1| - 0.017 14.9 0.0 7.1 6.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_47 PF16221.5 gi|344210964|ref|YP_004795284.1| - 0.019 14.5 0.1 6.5 6.4 0.0 2.5 2 0 0 2 2 2 0 winged helix-turn-helix Cdc6_C PF09079.11 gi|344210964|ref|YP_004795284.1| - 0.022 14.7 0.1 0.35 10.9 0.0 2.3 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_AsnC-type PF13404.6 gi|344210964|ref|YP_004795284.1| - 0.029 14.2 0.1 0.55 10.1 0.0 3.3 3 1 0 3 3 2 0 AsnC-type helix-turn-helix domain Mnd1 PF03962.15 gi|344210964|ref|YP_004795284.1| - 0.03 14.6 0.0 2.4 8.5 0.0 2.4 2 0 0 2 2 2 0 Mnd1 HTH domain HTH_10 PF04967.12 gi|344210964|ref|YP_004795284.1| - 0.038 13.8 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain DUF2250 PF10007.9 gi|344210964|ref|YP_004795284.1| - 0.044 13.9 0.0 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) BLACT_WH PF17778.1 gi|344210964|ref|YP_004795284.1| - 0.055 13.5 8.1 0.16 12.0 0.1 3.1 3 0 0 3 3 3 0 Beta-lactamase associated winged helix domain RP-C PF03428.13 gi|344210964|ref|YP_004795284.1| - 0.063 12.9 0.1 0.89 9.2 0.0 2.5 3 0 0 3 3 3 0 Replication protein C N-terminal domain DDRGK PF09756.9 gi|344210964|ref|YP_004795284.1| - 0.069 12.7 0.1 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 DDRGK domain HxlR PF01638.17 gi|344210964|ref|YP_004795284.1| - 0.12 12.2 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_36 PF13730.6 gi|344210964|ref|YP_004795284.1| - 0.15 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain CdvA PF18822.1 gi|344210965|ref|YP_004795285.1| - 0.00023 21.0 1.5 0.00041 20.2 1.5 1.4 1 1 0 1 1 1 1 CdvA-like coiled-coil domain CALCOCO1 PF07888.11 gi|344210965|ref|YP_004795285.1| - 0.00061 18.8 2.8 0.00086 18.3 2.8 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Leu_zip PF15294.6 gi|344210965|ref|YP_004795285.1| - 0.021 14.4 1.7 0.03 13.9 1.7 1.2 1 0 0 1 1 1 0 Leucine zipper GvpG PF05120.12 gi|344210965|ref|YP_004795285.1| - 0.024 14.7 1.8 0.049 13.6 1.8 1.5 1 0 0 1 1 1 0 Gas vesicle protein G Spc7 PF08317.11 gi|344210965|ref|YP_004795285.1| - 0.041 12.8 2.2 0.058 12.3 2.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Fmp27_WPPW PF10359.9 gi|344210965|ref|YP_004795285.1| - 0.12 11.2 1.1 0.19 10.5 1.1 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ABC_tran_CTD PF16326.5 gi|344210965|ref|YP_004795285.1| - 0.21 11.9 3.7 0.26 11.6 2.5 1.7 1 1 1 2 2 2 0 ABC transporter C-terminal domain CLZ PF16526.5 gi|344210965|ref|YP_004795285.1| - 0.29 11.5 2.7 0.45 10.9 1.3 2.0 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels GBP_C PF02841.14 gi|344210965|ref|YP_004795285.1| - 0.79 9.1 5.9 0.98 8.8 5.9 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DivIC PF04977.15 gi|344210965|ref|YP_004795285.1| - 9.9 6.0 7.6 1.7 8.4 3.7 1.8 2 1 0 2 2 2 0 Septum formation initiator DUF1405 PF07187.11 gi|344210966|ref|YP_004795286.1| - 4.8e-35 120.9 11.6 4.8e-35 120.9 11.6 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1405) HTH_10 PF04967.12 gi|344210968|ref|YP_004795288.1| - 3e-16 58.9 0.0 5e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344210968|ref|YP_004795288.1| - 4.3e-05 23.4 0.0 8.8e-05 22.4 0.0 1.6 1 1 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|344210968|ref|YP_004795288.1| - 0.00077 18.9 0.0 0.0014 18.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Peptidase_S49 PF01343.18 gi|344210968|ref|YP_004795288.1| - 0.014 15.3 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S49 MarR_2 PF12802.7 gi|344210968|ref|YP_004795288.1| - 0.057 13.3 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|344210968|ref|YP_004795288.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain acVLRF1 PF18859.1 gi|344210969|ref|YP_004795289.1| - 3.8e-30 104.8 1.0 3.8e-30 104.8 1.0 2.5 2 1 1 3 3 1 1 Actinobacteria/chloroflexi VLRF1 release factor ERM PF00769.19 gi|344210969|ref|YP_004795289.1| - 0.00016 21.6 6.3 0.00023 21.0 6.3 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family HOOK PF05622.12 gi|344210969|ref|YP_004795289.1| - 0.00021 19.6 6.4 0.0003 19.1 6.4 1.1 1 0 0 1 1 1 1 HOOK protein eRF1_2 PF03464.15 gi|344210969|ref|YP_004795289.1| - 0.00091 19.5 0.2 0.0026 18.1 0.0 1.8 2 0 0 2 2 1 1 eRF1 domain 2 ATG16 PF08614.11 gi|344210969|ref|YP_004795289.1| - 0.001 19.3 12.8 0.0018 18.5 12.8 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) bZIP_1 PF00170.21 gi|344210969|ref|YP_004795289.1| - 0.002 18.2 12.1 0.25 11.5 4.7 2.4 1 1 1 2 2 2 2 bZIP transcription factor CLZ PF16526.5 gi|344210969|ref|YP_004795289.1| - 0.008 16.5 10.6 0.0096 16.3 5.9 2.7 1 1 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KASH_CCD PF14662.6 gi|344210969|ref|YP_004795289.1| - 0.0084 15.9 8.3 0.013 15.4 8.3 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Mto2_bdg PF12808.7 gi|344210969|ref|YP_004795289.1| - 0.0096 16.2 4.4 0.0096 16.2 4.4 2.6 1 1 1 2 2 2 1 Micro-tubular organiser Mto1 C-term Mto2-binding region bZIP_2 PF07716.15 gi|344210969|ref|YP_004795289.1| - 0.017 15.2 15.1 0.26 11.4 2.6 2.5 1 1 1 2 2 2 0 Basic region leucine zipper TMPIT PF07851.13 gi|344210969|ref|YP_004795289.1| - 0.017 14.4 0.8 0.025 13.8 0.8 1.2 1 0 0 1 1 1 0 TMPIT-like protein Leu_zip PF15294.6 gi|344210969|ref|YP_004795289.1| - 0.02 14.4 4.0 0.03 13.9 4.0 1.2 1 0 0 1 1 1 0 Leucine zipper Uso1_p115_C PF04871.13 gi|344210969|ref|YP_004795289.1| - 0.036 14.4 9.7 0.07 13.5 9.7 1.5 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF724 PF05266.14 gi|344210969|ref|YP_004795289.1| - 0.053 13.4 3.8 0.097 12.5 3.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) FlxA PF14282.6 gi|344210969|ref|YP_004795289.1| - 0.056 13.4 0.7 0.056 13.4 0.7 1.5 2 0 0 2 2 1 0 FlxA-like protein TSC22 PF01166.18 gi|344210969|ref|YP_004795289.1| - 0.077 13.3 9.2 1.1 9.7 0.7 2.5 2 1 0 2 2 2 0 TSC-22/dip/bun family Fmp27_WPPW PF10359.9 gi|344210969|ref|YP_004795289.1| - 0.08 11.8 4.7 0.12 11.3 4.7 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ZapB PF06005.12 gi|344210969|ref|YP_004795289.1| - 0.093 13.2 17.4 0.84 10.1 5.1 2.6 1 1 1 2 2 2 0 Cell division protein ZapB FPP PF05911.11 gi|344210969|ref|YP_004795289.1| - 0.094 10.9 7.4 0.13 10.5 7.4 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil Laminin_II PF06009.12 gi|344210969|ref|YP_004795289.1| - 0.1 12.6 2.6 0.18 11.8 2.6 1.4 1 0 0 1 1 1 0 Laminin Domain II Jnk-SapK_ap_N PF09744.9 gi|344210969|ref|YP_004795289.1| - 0.12 12.6 14.2 0.29 11.4 14.2 1.6 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|344210969|ref|YP_004795289.1| - 0.15 12.1 8.5 0.34 11.0 8.5 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CENP-Q PF13094.6 gi|344210969|ref|YP_004795289.1| - 0.22 11.7 15.2 0.66 10.2 15.2 1.8 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Snapin_Pallidin PF14712.6 gi|344210969|ref|YP_004795289.1| - 0.23 11.9 5.0 2.3 8.7 5.0 2.4 1 1 0 1 1 1 0 Snapin/Pallidin DUF4407 PF14362.6 gi|344210969|ref|YP_004795289.1| - 0.26 10.6 4.8 0.47 9.8 4.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Atg14 PF10186.9 gi|344210969|ref|YP_004795289.1| - 0.43 9.6 5.3 0.81 8.7 5.3 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 5_nucleotid PF05761.14 gi|344210969|ref|YP_004795289.1| - 0.47 9.3 2.6 0.68 8.8 2.6 1.2 1 0 0 1 1 1 0 5' nucleotidase family DUF1664 PF07889.12 gi|344210969|ref|YP_004795289.1| - 0.47 10.5 2.0 0.88 9.6 1.4 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) Cgr1 PF03879.14 gi|344210969|ref|YP_004795289.1| - 0.53 10.7 9.3 1.3 9.4 9.3 1.6 1 0 0 1 1 1 0 Cgr1 family DUF4988 PF16378.5 gi|344210969|ref|YP_004795289.1| - 0.64 9.7 2.5 3.7 7.2 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function WD40_alt PF14077.6 gi|344210969|ref|YP_004795289.1| - 0.8 9.6 5.1 2 8.4 0.3 2.4 2 0 0 2 2 2 0 Alternative WD40 repeat motif Spc7 PF08317.11 gi|344210969|ref|YP_004795289.1| - 0.81 8.5 7.7 1.3 7.9 7.7 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein OmpH PF03938.14 gi|344210969|ref|YP_004795289.1| - 0.84 10.0 5.8 2.2 8.6 5.7 1.7 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) DUF4337 PF14235.6 gi|344210969|ref|YP_004795289.1| - 0.93 9.6 6.9 1.4 9.0 6.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Dor1 PF04124.12 gi|344210969|ref|YP_004795289.1| - 0.96 8.1 6.4 1.4 7.5 6.4 1.2 1 0 0 1 1 1 0 Dor1-like family DivIC PF04977.15 gi|344210969|ref|YP_004795289.1| - 0.98 9.2 13.4 0.89 9.4 4.0 3.0 2 1 1 3 3 3 0 Septum formation initiator VSG_B PF13206.6 gi|344210969|ref|YP_004795289.1| - 1.1 8.4 3.9 1.6 7.9 3.9 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain SlyX PF04102.12 gi|344210969|ref|YP_004795289.1| - 1.1 9.9 10.6 4 8.1 10.6 2.0 1 0 0 1 1 1 0 SlyX DUF1192 PF06698.11 gi|344210969|ref|YP_004795289.1| - 1.2 9.3 14.8 2.3 8.3 5.6 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) FapA PF03961.13 gi|344210969|ref|YP_004795289.1| - 1.2 7.7 3.0 1.6 7.2 3.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A GAS PF13851.6 gi|344210969|ref|YP_004795289.1| - 1.2 8.4 10.1 0.26 10.6 6.8 1.5 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding betaPIX_CC PF16523.5 gi|344210969|ref|YP_004795289.1| - 1.5 8.7 13.1 1.5 8.7 4.8 2.3 1 1 1 2 2 2 0 betaPIX coiled coil Tho2 PF11262.8 gi|344210969|ref|YP_004795289.1| - 1.7 7.8 3.0 2.4 7.3 3.0 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Spc24 PF08286.11 gi|344210969|ref|YP_004795289.1| - 2 8.7 10.0 0.88 9.8 4.0 2.3 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF2802 PF10975.8 gi|344210969|ref|YP_004795289.1| - 2.1 8.5 8.4 5.5 7.2 0.7 2.9 2 1 1 3 3 2 0 Protein of unknown function (DUF2802) Ax_dynein_light PF10211.9 gi|344210969|ref|YP_004795289.1| - 2.1 8.3 10.7 9.8 6.1 4.5 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain UPF0242 PF06785.11 gi|344210969|ref|YP_004795289.1| - 2.3 8.3 6.7 4.6 7.3 6.7 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Csm1_N PF18504.1 gi|344210969|ref|YP_004795289.1| - 2.6 8.5 10.3 8.9 6.7 1.4 2.5 1 1 0 2 2 2 0 Csm1 N-terminal domain DUF1690 PF07956.11 gi|344210969|ref|YP_004795289.1| - 3.1 8.2 9.4 7.1 7.1 8.3 2.0 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) V_ATPase_I PF01496.19 gi|344210969|ref|YP_004795289.1| - 3.4 5.5 3.5 4.3 5.1 3.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family YabA PF06156.13 gi|344210969|ref|YP_004795289.1| - 3.8 8.2 6.8 11 6.8 6.4 1.9 1 1 1 2 2 2 0 Initiation control protein YabA Troponin PF00992.20 gi|344210969|ref|YP_004795289.1| - 5 7.4 12.4 11 6.3 12.3 1.6 1 1 0 1 1 1 0 Troponin CorA PF01544.18 gi|344210969|ref|YP_004795289.1| - 5.2 6.3 8.1 4.7 6.4 6.9 1.4 2 0 0 2 2 1 0 CorA-like Mg2+ transporter protein DUF2203 PF09969.9 gi|344210969|ref|YP_004795289.1| - 8.6 7.1 8.5 2.2 9.0 0.8 2.4 2 1 1 3 3 2 0 Uncharacterized conserved protein (DUF2203) DUF1611 PF07755.11 gi|344210970|ref|YP_004795290.1| - 4.9e-73 244.7 1.3 6.4e-73 244.3 1.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|344210970|ref|YP_004795290.1| - 2.6e-31 107.7 0.1 1.5e-30 105.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|344210971|ref|YP_004795291.1| - 8.1e-39 133.5 3.6 1.2e-38 132.9 3.6 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210971|ref|YP_004795291.1| - 2.8e-09 37.2 0.4 7.9e-09 35.7 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|344210971|ref|YP_004795291.1| - 0.0017 17.6 0.3 0.0027 16.9 0.3 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus AhpC-TSA PF00578.21 gi|344210972|ref|YP_004795292.1| - 3.2e-30 104.6 0.0 3.7e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344210972|ref|YP_004795292.1| - 1.4e-23 83.2 0.0 1.6e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|344210972|ref|YP_004795292.1| - 0.0013 18.3 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.6 gi|344210972|ref|YP_004795292.1| - 0.015 15.4 0.0 1.3 9.2 0.0 2.1 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Hexapep PF00132.24 gi|344210974|ref|YP_004795294.1| - 8e-12 44.4 13.5 0.0011 18.6 0.3 4.4 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344210974|ref|YP_004795294.1| - 2.1e-06 27.4 6.4 0.0023 17.6 0.2 3.5 3 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|344210974|ref|YP_004795294.1| - 0.0068 15.4 0.0 0.007 15.4 0.0 1.1 1 0 0 1 1 1 1 L-fucokinase Usp PF00582.26 gi|344210975|ref|YP_004795295.1| - 1.1e-34 119.9 2.0 1.3e-34 119.7 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family tRNA-synt_2b PF00587.25 gi|344210977|ref|YP_004795297.1| - 1e-27 97.2 0.0 1.9e-27 96.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|344210977|ref|YP_004795297.1| - 5.3e-15 55.3 0.4 1.2e-14 54.2 0.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.21 gi|344210977|ref|YP_004795297.1| - 5.5e-14 52.0 0.2 1.3e-13 50.8 0.2 1.7 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|344210977|ref|YP_004795297.1| - 2.5e-13 49.9 0.0 4.7e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain ThiS PF02597.20 gi|344210977|ref|YP_004795297.1| - 0.18 12.4 2.4 1 10.1 0.1 3.0 3 0 0 3 3 3 0 ThiS family DAGK_cat PF00781.24 gi|344210979|ref|YP_004795299.1| - 1e-20 73.6 0.4 1.9e-20 72.7 0.4 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain CitMHS PF03600.16 gi|344210980|ref|YP_004795300.1| - 2.4e-59 201.0 7.6 2.4e-59 201.0 7.6 1.4 1 1 1 2 2 2 1 Citrate transporter TrkA_C PF02080.21 gi|344210980|ref|YP_004795300.1| - 1.7e-18 66.2 2.7 2.4e-09 36.9 0.4 3.4 3 0 0 3 3 3 3 TrkA-C domain Na_sulph_symp PF00939.19 gi|344210980|ref|YP_004795300.1| - 4.9e-13 48.9 36.0 2e-09 37.0 16.1 3.0 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DctM PF06808.12 gi|344210980|ref|YP_004795300.1| - 0.00097 18.1 20.0 0.00097 18.1 20.0 2.5 2 0 0 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component acVLRF1 PF18859.1 gi|344210980|ref|YP_004795300.1| - 1.6 9.0 6.0 5.4 7.3 2.5 2.8 2 1 1 3 3 3 0 Actinobacteria/chloroflexi VLRF1 release factor DUF3285 PF11688.8 gi|344210980|ref|YP_004795300.1| - 2.2 8.3 4.5 0.84 9.6 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) PspA_IM30 PF04012.12 gi|344210981|ref|YP_004795301.1| - 8.9e-34 117.0 39.4 8.9e-34 117.0 39.4 1.7 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.21 gi|344210981|ref|YP_004795301.1| - 0.0016 18.1 19.2 0.0016 18.1 19.2 4.3 1 1 3 4 4 4 1 Snf7 DUF1664 PF07889.12 gi|344210981|ref|YP_004795301.1| - 0.025 14.6 7.5 0.025 14.6 7.5 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) ERM PF00769.19 gi|344210981|ref|YP_004795301.1| - 0.05 13.4 53.6 0.14 12.0 53.6 1.7 1 1 0 1 1 1 0 Ezrin/radixin/moesin family YabA PF06156.13 gi|344210981|ref|YP_004795301.1| - 0.2 12.3 34.3 0.22 12.2 5.7 3.8 1 1 2 3 3 3 0 Initiation control protein YabA FTA4 PF13093.6 gi|344210981|ref|YP_004795301.1| - 0.67 9.8 32.7 0.08 12.8 6.4 3.5 1 1 2 3 3 3 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF3138 PF11336.8 gi|344210981|ref|YP_004795301.1| - 0.68 8.5 6.5 1.2 7.7 6.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF3535 PF12054.8 gi|344210981|ref|YP_004795301.1| - 0.71 9.1 15.6 0.83 8.8 15.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3535) DUF3450 PF11932.8 gi|344210981|ref|YP_004795301.1| - 0.93 8.7 44.5 0.14 11.5 7.2 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) AAA_13 PF13166.6 gi|344210981|ref|YP_004795301.1| - 1 7.9 33.6 0.46 9.1 30.5 1.8 1 1 1 2 2 2 0 AAA domain YlqD PF11068.8 gi|344210981|ref|YP_004795301.1| - 2.3 8.6 44.2 1.2 9.6 17.2 3.4 1 1 2 3 3 3 0 YlqD protein DUF948 PF06103.11 gi|344210981|ref|YP_004795301.1| - 3.2 8.1 15.1 1.4 9.2 0.6 3.7 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|344210981|ref|YP_004795301.1| - 4.2 5.2 17.8 23 2.7 17.3 1.8 1 1 0 1 1 1 0 Prominin TFIIA PF03153.13 gi|344210981|ref|YP_004795301.1| - 5.3 6.9 35.8 6.1 6.7 35.8 1.0 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit FliD_N PF02465.18 gi|344210981|ref|YP_004795301.1| - 7.7 7.3 23.3 2.8 8.7 8.6 3.9 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus DUF4200 PF13863.6 gi|344210981|ref|YP_004795301.1| - 9.3 6.7 52.3 0.82 10.1 23.1 4.5 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) Thioesterase PF00975.20 gi|344210982|ref|YP_004795302.1| - 0.00045 20.4 0.1 0.0047 17.1 0.1 1.9 2 0 0 2 2 2 1 Thioesterase domain DLH PF01738.18 gi|344210982|ref|YP_004795302.1| - 0.0044 16.6 0.0 0.0075 15.8 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|344210982|ref|YP_004795302.1| - 0.0093 15.6 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) LIP PF03583.14 gi|344210982|ref|YP_004795302.1| - 0.066 12.5 0.1 0.099 11.9 0.1 1.4 1 0 0 1 1 1 0 Secretory lipase VirJ PF06057.11 gi|344210982|ref|YP_004795302.1| - 0.072 13.0 0.0 2 8.2 0.0 2.1 1 1 1 2 2 2 0 Bacterial virulence protein (VirJ) BAAT_C PF08840.11 gi|344210982|ref|YP_004795302.1| - 0.087 12.7 0.1 0.6 10.0 0.0 1.9 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|344210982|ref|YP_004795302.1| - 0.1 13.2 12.7 0.46 11.1 7.0 2.1 1 1 1 2 2 2 0 Alpha/beta hydrolase family GFO_IDH_MocA PF01408.22 gi|344210982|ref|YP_004795302.1| - 0.17 12.7 0.0 27 5.6 0.0 2.3 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Hydrolase_4 PF12146.8 gi|344210982|ref|YP_004795302.1| - 0.19 11.0 0.3 4.7 6.4 0.0 2.1 1 1 1 2 2 2 0 Serine aminopeptidase, S33 VirB3 PF05101.13 gi|344210983|ref|YP_004795303.1| - 0.27 11.5 3.0 0.3 11.4 3.0 1.1 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein CTP_synth_N PF06418.14 gi|344210985|ref|YP_004795305.1| - 5.9e-124 412.6 0.2 7.8e-124 412.2 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|344210985|ref|YP_004795305.1| - 1.4e-54 184.8 0.0 2.3e-54 184.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344210985|ref|YP_004795305.1| - 3.9e-05 23.5 0.0 0.0001 22.1 0.0 1.7 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|344210985|ref|YP_004795305.1| - 0.0028 17.7 0.0 0.0037 17.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|344210985|ref|YP_004795305.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|344210985|ref|YP_004795305.1| - 0.17 11.7 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 0 DJ-1/PfpI family GMP_synt_C PF00958.22 gi|344210986|ref|YP_004795306.1| - 6.9e-29 99.8 0.2 2.9e-28 97.7 0.1 2.0 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|344210986|ref|YP_004795306.1| - 3.9e-08 32.7 0.0 3.8e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|344210986|ref|YP_004795306.1| - 0.00041 19.2 0.0 0.0077 15.1 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|344210986|ref|YP_004795306.1| - 0.0049 16.4 0.0 0.019 14.5 0.0 1.9 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|344210986|ref|YP_004795306.1| - 0.046 13.4 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.14 gi|344210986|ref|YP_004795306.1| - 0.056 13.0 0.0 0.13 11.8 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|344210986|ref|YP_004795306.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TrkA_N PF02254.18 gi|344210987|ref|YP_004795307.1| - 0.00029 21.1 0.2 0.00031 21.0 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain TM_helix PF05552.12 gi|344210988|ref|YP_004795308.1| - 2.5e-15 56.2 7.6 1.3e-06 28.2 0.3 4.7 6 0 0 6 6 6 3 Conserved TM helix FtsX PF02687.21 gi|344210988|ref|YP_004795308.1| - 3 8.4 24.9 0.55 10.7 0.1 4.3 2 2 1 4 4 4 0 FtsX-like permease family Lactamase_B PF00753.27 gi|344210989|ref|YP_004795309.1| - 1.5e-22 80.6 7.7 1.8e-22 80.3 7.7 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|344210989|ref|YP_004795309.1| - 0.0005 19.6 0.2 0.0008 19.0 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|344210989|ref|YP_004795309.1| - 0.064 12.7 0.0 0.093 12.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Aldo_ket_red PF00248.21 gi|344210990|ref|YP_004795310.1| - 2.7e-58 197.5 0.0 2.1e-44 151.9 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family DEP PF00610.21 gi|344210990|ref|YP_004795310.1| - 0.17 12.0 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) DHHW PF14286.6 gi|344210991|ref|YP_004795311.1| - 0.017 14.5 0.2 0.025 13.9 0.2 1.2 1 0 0 1 1 1 0 DHHW protein ANAPC4_WD40 PF12894.7 gi|344210991|ref|YP_004795311.1| - 0.06 13.6 0.0 0.16 12.3 0.0 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain Sortilin-Vps10 PF15902.5 gi|344210991|ref|YP_004795311.1| - 0.069 11.9 1.4 0.095 11.5 1.4 1.2 1 0 0 1 1 1 0 Sortilin, neurotensin receptor 3, EFP_N PF08207.12 gi|344210991|ref|YP_004795311.1| - 0.14 12.3 0.0 0.41 10.7 0.0 1.8 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain Rax2 PF12768.7 gi|344210991|ref|YP_004795311.1| - 0.43 10.0 1.7 4.4 6.7 0.3 2.4 1 1 2 3 3 3 0 Cortical protein marker for cell polarity MoCF_biosynth PF00994.24 gi|344210992|ref|YP_004795312.1| - 3.8e-16 59.1 0.8 6.2e-16 58.4 0.8 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain HisKA_7TM PF16927.5 gi|344210994|ref|YP_004795314.1| - 3e-47 161.5 18.6 3.7e-47 161.2 18.6 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|344210994|ref|YP_004795314.1| - 4.2e-14 52.7 2.4 6e-14 52.2 0.7 2.2 2 1 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|344210994|ref|YP_004795314.1| - 6.9e-14 52.3 0.0 1.7e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344210994|ref|YP_004795314.1| - 2.5e-08 33.9 0.1 4.5e-08 33.1 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|344210994|ref|YP_004795314.1| - 5e-08 32.9 0.0 3.4e-07 30.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|344210994|ref|YP_004795314.1| - 1.8e-07 31.3 0.0 1.6e-06 28.3 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|344210994|ref|YP_004795314.1| - 8.8e-06 25.6 0.5 3e-05 23.9 0.1 2.1 2 0 0 2 2 2 1 PAS domain HisKA PF00512.25 gi|344210994|ref|YP_004795314.1| - 4.7e-05 23.4 0.6 0.00016 21.6 0.6 2.0 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|344210994|ref|YP_004795314.1| - 0.0013 18.3 0.1 0.0013 18.3 0.1 2.9 3 0 0 3 3 3 1 Archaeal 4TM region of histidine kinase HATPase_c_3 PF13589.6 gi|344210994|ref|YP_004795314.1| - 0.0037 17.1 0.0 0.0073 16.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.6 gi|344210994|ref|YP_004795314.1| - 0.0046 16.6 0.6 0.014 15.1 0.6 1.8 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.7 gi|344210994|ref|YP_004795314.1| - 0.15 12.3 0.4 1.2 9.4 0.1 2.6 2 1 0 2 2 2 0 PAS fold adh_short PF00106.25 gi|344210995|ref|YP_004795315.1| - 9.3e-43 146.0 0.1 1.2e-42 145.5 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344210995|ref|YP_004795315.1| - 3.8e-37 128.1 0.0 4.6e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344210995|ref|YP_004795315.1| - 7.5e-07 29.2 0.8 1.1e-05 25.4 0.8 2.0 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344210995|ref|YP_004795315.1| - 7.5e-05 22.3 0.1 8.2e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NUDIX PF00293.28 gi|344210996|ref|YP_004795316.1| - 1.1e-14 54.6 2.1 1.4e-14 54.2 2.1 1.1 1 0 0 1 1 1 1 NUDIX domain HTH_10 PF04967.12 gi|344210997|ref|YP_004795317.1| - 2e-19 69.1 0.1 5.5e-19 67.7 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.10 gi|344210997|ref|YP_004795317.1| - 0.00014 21.6 1.0 0.013 15.3 0.0 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344210997|ref|YP_004795317.1| - 0.00031 20.2 0.0 0.0014 18.1 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding BAT PF15915.5 gi|344210997|ref|YP_004795317.1| - 0.004 17.0 0.1 0.0057 16.5 0.1 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|344210997|ref|YP_004795317.1| - 0.0091 15.9 0.0 0.023 14.6 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|344210997|ref|YP_004795317.1| - 0.012 15.4 0.1 0.039 13.8 0.1 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PuR_N PF09182.10 gi|344210997|ref|YP_004795317.1| - 0.015 15.2 0.0 0.048 13.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal HTH_20 PF12840.7 gi|344210997|ref|YP_004795317.1| - 0.029 14.4 0.2 0.23 11.6 0.1 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|344210997|ref|YP_004795317.1| - 0.077 13.2 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.22 gi|344210997|ref|YP_004795317.1| - 0.12 12.3 0.0 0.45 10.5 0.0 1.9 2 0 0 2 2 2 0 MarR family HTH_35 PF13693.6 gi|344210997|ref|YP_004795317.1| - 0.17 11.9 0.0 0.38 10.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Polyketide_cyc2 PF10604.9 gi|344210998|ref|YP_004795318.1| - 1.4e-09 38.4 0.2 1.8e-09 38.0 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|344210998|ref|YP_004795318.1| - 0.016 15.4 0.1 0.076 13.2 0.1 1.9 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AdoMet_Synthase PF01941.19 gi|344210999|ref|YP_004795319.1| - 0.023 13.5 0.1 0.028 13.2 0.1 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) Radical_SAM PF04055.21 gi|344211000|ref|YP_004795320.1| - 6.8e-19 68.9 0.0 9.3e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|344211000|ref|YP_004795320.1| - 1.3e-05 25.4 0.0 2.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|344211000|ref|YP_004795320.1| - 0.00012 22.2 0.0 0.00026 21.1 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|344211000|ref|YP_004795320.1| - 0.00069 20.1 0.0 0.0019 18.7 0.0 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain HTH_10 PF04967.12 gi|344211001|ref|YP_004795321.1| - 1.5e-19 69.5 0.0 2.4e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344211001|ref|YP_004795321.1| - 1.2e-12 48.0 4.4 2e-12 47.3 4.4 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GerE PF00196.19 gi|344211001|ref|YP_004795321.1| - 0.026 14.0 0.1 0.19 11.3 0.1 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|344211001|ref|YP_004795321.1| - 0.2 11.4 0.3 1.1 9.1 0.3 2.1 1 1 0 1 1 1 0 LexA DNA binding domain DUF2249 PF10006.9 gi|344211003|ref|YP_004795323.1| - 1.6e-19 69.5 0.1 1.9e-19 69.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) YjeJ PF15922.5 gi|344211003|ref|YP_004795323.1| - 0.086 12.1 0.0 0.097 11.9 0.0 1.0 1 0 0 1 1 1 0 YjeJ-like RELT PF12606.8 gi|344211003|ref|YP_004795323.1| - 0.19 10.8 0.0 0.27 10.2 0.0 1.2 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 NDUF_B12 PF08122.12 gi|344211004|ref|YP_004795324.1| - 0.024 14.7 2.5 0.12 12.4 2.5 2.1 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family MrpF_PhaF PF04066.13 gi|344211004|ref|YP_004795324.1| - 0.15 12.5 8.4 0.31 11.5 4.5 2.3 1 1 1 2 2 2 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) HTH_20 PF12840.7 gi|344211005|ref|YP_004795325.1| - 5.8e-10 39.1 0.0 8.1e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344211005|ref|YP_004795325.1| - 1.1e-09 38.0 0.0 1.6e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344211005|ref|YP_004795325.1| - 0.00021 21.1 0.0 0.00037 20.3 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|344211005|ref|YP_004795325.1| - 0.0013 18.6 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.10 gi|344211005|ref|YP_004795325.1| - 0.0021 18.0 0.1 0.0033 17.3 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MazG-like PF12643.7 gi|344211005|ref|YP_004795325.1| - 0.0023 18.1 0.1 0.0061 16.8 0.0 1.6 1 1 1 2 2 2 1 MazG-like family Rrf2 PF02082.20 gi|344211005|ref|YP_004795325.1| - 0.0089 16.4 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|344211005|ref|YP_004795325.1| - 0.013 15.3 0.0 0.029 14.3 0.0 1.5 1 1 1 2 2 2 0 MarR family GntR PF00392.21 gi|344211005|ref|YP_004795325.1| - 0.015 15.0 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|344211005|ref|YP_004795325.1| - 0.021 14.4 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FtsK_gamma PF09397.10 gi|344211005|ref|YP_004795325.1| - 0.023 14.5 0.0 0.19 11.5 0.0 2.2 1 1 1 2 2 2 0 Ftsk gamma domain HTH_DeoR PF08220.12 gi|344211005|ref|YP_004795325.1| - 0.026 14.3 0.1 0.087 12.6 0.0 1.8 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|344211005|ref|YP_004795325.1| - 0.046 13.6 0.0 0.055 13.4 0.0 1.2 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2089 PF09862.9 gi|344211005|ref|YP_004795325.1| - 0.052 13.6 0.0 0.076 13.1 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_45 PF14947.6 gi|344211005|ref|YP_004795325.1| - 0.059 13.4 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|344211005|ref|YP_004795325.1| - 0.074 13.0 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|344211005|ref|YP_004795325.1| - 0.077 13.3 0.0 0.11 12.9 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor Aminotran_1_2 PF00155.21 gi|344211006|ref|YP_004795326.1| - 8.3e-65 219.3 0.0 9.3e-65 219.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|344211006|ref|YP_004795326.1| - 8.8e-13 48.3 0.1 1.5e-12 47.5 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|344211006|ref|YP_004795326.1| - 3e-09 36.6 0.0 4.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|344211006|ref|YP_004795326.1| - 4.1e-05 22.7 0.0 5.9e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|344211006|ref|YP_004795326.1| - 9.8e-05 21.0 0.0 0.00015 20.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|344211006|ref|YP_004795326.1| - 0.016 13.9 0.0 0.027 13.1 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III ALF PF03752.13 gi|344211006|ref|YP_004795326.1| - 2.7 8.1 6.8 6.6 6.8 0.8 3.6 3 0 0 3 3 3 0 Short repeats of unknown function Peptidase_S8 PF00082.22 gi|344211007|ref|YP_004795327.1| - 2.3e-51 174.8 6.5 4.6e-51 173.8 6.5 1.5 1 0 0 1 1 1 1 Subtilase family PKD PF00801.20 gi|344211007|ref|YP_004795327.1| - 7.3e-16 57.8 3.2 2.8e-15 55.9 1.6 2.5 2 0 0 2 2 2 1 PKD domain Y_Y_Y PF07495.13 gi|344211007|ref|YP_004795327.1| - 6.8e-05 22.8 0.5 0.0044 17.0 0.1 3.0 2 1 0 2 2 2 1 Y_Y_Y domain REJ PF02010.15 gi|344211007|ref|YP_004795327.1| - 0.0036 16.2 2.6 0.31 9.8 0.1 2.1 1 1 1 2 2 2 2 REJ domain DUF4625 PF15418.6 gi|344211007|ref|YP_004795327.1| - 0.029 14.6 0.1 0.062 13.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) AroM PF07302.11 gi|344211007|ref|YP_004795327.1| - 0.047 13.1 0.0 0.35 10.2 0.0 2.1 2 0 0 2 2 2 0 AroM protein BiPBP_C PF06832.12 gi|344211007|ref|YP_004795327.1| - 0.1 12.7 0.0 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family EMP24_GP25L PF01105.24 gi|344211007|ref|YP_004795327.1| - 0.19 11.6 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Rbx_binding PF18113.1 gi|344211007|ref|YP_004795327.1| - 0.21 11.4 0.1 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin binding C-terminal domain FctA PF12892.7 gi|344211007|ref|YP_004795327.1| - 8.6 7.2 8.4 38 5.1 8.4 2.2 1 1 0 1 1 1 0 Spy0128-like isopeptide containing domain Thiolase_N PF00108.23 gi|344211008|ref|YP_004795328.1| - 2.2e-83 279.6 0.2 3.4e-83 279.0 0.2 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|344211008|ref|YP_004795328.1| - 2.2e-33 114.5 3.8 6.7e-33 113.0 0.2 2.7 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|344211008|ref|YP_004795328.1| - 0.0042 16.7 2.7 0.0093 15.6 0.5 2.2 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|344211008|ref|YP_004795328.1| - 0.012 15.8 0.1 0.077 13.2 0.1 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TPR_MLP1_2 PF07926.12 gi|344211008|ref|YP_004795328.1| - 0.1 12.7 0.2 0.15 12.1 0.2 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ACP_syn_III PF08545.10 gi|344211008|ref|YP_004795328.1| - 0.27 11.1 2.1 8.7 6.3 0.3 2.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Glutaredoxin2_C PF04399.13 gi|344211009|ref|YP_004795329.1| - 0.064 13.1 0.1 0.064 13.1 0.1 1.0 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain HTH_24 PF13412.6 gi|344211010|ref|YP_004795330.1| - 4.6e-11 42.1 0.0 7.6e-10 38.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344211010|ref|YP_004795330.1| - 1.1e-10 41.2 0.7 3.1e-10 39.8 0.3 1.9 2 0 0 2 2 1 1 MarR family MarR PF01047.22 gi|344211010|ref|YP_004795330.1| - 4.3e-08 33.0 0.0 1.2e-07 31.5 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344211010|ref|YP_004795330.1| - 4.4e-07 29.8 0.0 1.2e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|344211010|ref|YP_004795330.1| - 2.1e-06 28.1 0.1 4.6e-06 27.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|344211010|ref|YP_004795330.1| - 0.00022 21.2 0.1 0.00056 19.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|344211010|ref|YP_004795330.1| - 0.00031 20.7 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_13 PF11972.8 gi|344211010|ref|YP_004795330.1| - 0.00037 20.5 0.9 0.00074 19.5 0.1 1.8 2 0 0 2 2 1 1 HTH DNA binding domain Mnd1 PF03962.15 gi|344211010|ref|YP_004795330.1| - 0.00039 20.6 0.0 0.00074 19.8 0.0 1.4 1 0 0 1 1 1 1 Mnd1 HTH domain TrmB PF01978.19 gi|344211010|ref|YP_004795330.1| - 0.00069 19.4 0.1 0.0013 18.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344211010|ref|YP_004795330.1| - 0.00093 18.9 0.0 0.0019 18.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344211010|ref|YP_004795330.1| - 0.001 18.9 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|344211010|ref|YP_004795330.1| - 0.0012 18.8 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain SMC_ScpB PF04079.16 gi|344211010|ref|YP_004795330.1| - 0.0018 18.0 0.1 0.0029 17.2 0.1 1.4 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Fe_dep_repress PF01325.19 gi|344211010|ref|YP_004795330.1| - 0.0023 18.1 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|344211010|ref|YP_004795330.1| - 0.0023 17.7 0.6 0.28 11.0 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF4423 PF14394.6 gi|344211010|ref|YP_004795330.1| - 0.0024 17.6 0.0 0.0037 17.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) NMD3 PF04981.13 gi|344211010|ref|YP_004795330.1| - 0.0041 16.6 0.0 0.0073 15.8 0.0 1.3 1 0 0 1 1 1 1 NMD3 family GntR PF00392.21 gi|344211010|ref|YP_004795330.1| - 0.0058 16.3 0.1 0.016 14.8 0.1 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|344211010|ref|YP_004795330.1| - 0.0063 16.8 0.0 0.015 15.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator TetR_C_7 PF14246.6 gi|344211010|ref|YP_004795330.1| - 0.012 15.7 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain HemN_C PF06969.16 gi|344211010|ref|YP_004795330.1| - 0.016 15.2 0.0 0.035 14.2 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HTH_23 PF13384.6 gi|344211010|ref|YP_004795330.1| - 0.023 14.5 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF4364 PF14277.6 gi|344211010|ref|YP_004795330.1| - 0.032 14.0 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) AbiEi_4 PF13338.6 gi|344211010|ref|YP_004795330.1| - 0.044 13.9 0.6 0.12 12.6 0.1 2.0 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin HTH_1 PF00126.27 gi|344211010|ref|YP_004795330.1| - 0.074 13.0 0.0 0.2 11.6 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rio2_N PF09202.11 gi|344211010|ref|YP_004795330.1| - 0.075 13.3 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_3 PF01381.22 gi|344211010|ref|YP_004795330.1| - 0.11 12.6 0.1 0.46 10.6 0.1 1.9 1 1 1 2 2 2 0 Helix-turn-helix LacI PF00356.21 gi|344211010|ref|YP_004795330.1| - 0.13 12.1 0.7 0.66 9.8 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family LexA_DNA_bind PF01726.16 gi|344211010|ref|YP_004795330.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Mrr_N PF14338.6 gi|344211010|ref|YP_004795330.1| - 0.18 11.9 0.0 0.66 10.1 0.0 1.9 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_12 PF08461.10 gi|344211010|ref|YP_004795330.1| - 0.19 11.7 0.1 0.44 10.5 0.1 1.6 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FaeA PF04703.12 gi|344211010|ref|YP_004795330.1| - 0.39 11.1 2.4 0.52 10.7 0.0 2.4 3 0 0 3 3 2 0 FaeA-like protein Metallophos PF00149.28 gi|344211011|ref|YP_004795331.1| - 1.9e-07 31.8 0.1 9e-07 29.6 0.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3463 PF11946.8 gi|344211011|ref|YP_004795331.1| - 0.25 11.2 0.0 0.41 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) Amino_oxidase PF01593.24 gi|344211013|ref|YP_004795333.1| - 1.6e-45 156.2 0.3 2e-45 155.9 0.3 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|344211013|ref|YP_004795333.1| - 3.4e-16 59.2 0.4 9.1e-16 57.9 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344211013|ref|YP_004795333.1| - 3.8e-14 53.1 4.1 2.9e-06 27.1 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344211013|ref|YP_004795333.1| - 7e-10 38.2 0.1 2.2e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|344211013|ref|YP_004795333.1| - 5.9e-09 35.5 3.3 4.6e-07 29.3 1.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|344211013|ref|YP_004795333.1| - 1.9e-07 30.7 0.6 8.2e-05 22.0 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|344211013|ref|YP_004795333.1| - 9.8e-06 25.0 0.9 9.3e-05 21.8 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344211013|ref|YP_004795333.1| - 1e-05 25.1 2.9 1.3e-05 24.8 0.7 2.1 2 1 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|344211013|ref|YP_004795333.1| - 4.3e-05 24.0 0.7 0.0019 18.7 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|344211013|ref|YP_004795333.1| - 5.2e-05 22.6 0.3 0.00014 21.2 0.1 1.7 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|344211013|ref|YP_004795333.1| - 0.0011 18.3 0.3 0.0021 17.4 0.3 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|344211013|ref|YP_004795333.1| - 0.0024 17.1 0.6 0.0043 16.2 0.6 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A MCRA PF06100.11 gi|344211013|ref|YP_004795333.1| - 0.027 13.3 0.0 0.073 11.9 0.0 1.6 2 0 0 2 2 2 0 MCRA family YjeF_N PF03853.15 gi|344211013|ref|YP_004795333.1| - 0.08 12.8 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 YjeF-related protein N-terminus NAD_binding_7 PF13241.6 gi|344211013|ref|YP_004795333.1| - 0.1 13.0 0.0 0.3 11.6 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|344211013|ref|YP_004795333.1| - 0.1 11.4 0.2 0.16 10.8 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|344211013|ref|YP_004795333.1| - 0.12 11.6 0.5 1.8 7.7 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.19 gi|344211013|ref|YP_004795333.1| - 0.13 10.6 0.0 0.18 10.2 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_binding_9 PF13454.6 gi|344211013|ref|YP_004795333.1| - 0.19 11.7 3.3 0.3 11.0 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|344211013|ref|YP_004795333.1| - 0.27 10.2 3.7 0.095 11.7 0.3 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein PALP PF00291.25 gi|344211014|ref|YP_004795334.1| - 1.4e-59 201.9 4.1 1.7e-59 201.6 4.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DZR PF12773.7 gi|344211014|ref|YP_004795334.1| - 0.045 13.8 0.6 0.087 12.9 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344211014|ref|YP_004795334.1| - 0.046 13.4 1.3 0.082 12.7 1.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.11 gi|344211014|ref|YP_004795334.1| - 0.062 13.4 1.1 0.12 12.4 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|344211014|ref|YP_004795334.1| - 0.13 12.4 0.3 0.65 10.2 0.9 1.8 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|344211014|ref|YP_004795334.1| - 0.16 11.3 2.9 0.44 9.9 2.9 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Preseq_ALAS PF09029.10 gi|344211014|ref|YP_004795334.1| - 0.16 12.4 0.0 0.31 11.6 0.0 1.4 1 0 0 1 1 1 0 5-aminolevulinate synthase presequence zinc_ribbon_15 PF17032.5 gi|344211014|ref|YP_004795334.1| - 0.17 12.6 0.8 0.25 12.1 0.8 1.2 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|344211014|ref|YP_004795334.1| - 0.22 11.6 0.5 0.47 10.5 0.5 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|344211014|ref|YP_004795334.1| - 0.26 11.0 1.2 0.45 10.3 1.2 1.3 1 0 0 1 1 1 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|344211014|ref|YP_004795334.1| - 0.41 10.1 2.0 0.98 8.9 2.0 1.7 1 0 0 1 1 1 0 zinc-ribbon domain ADH_zinc_N PF00107.26 gi|344211015|ref|YP_004795335.1| - 4.6e-22 78.4 1.8 7.6e-22 77.7 0.4 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|344211015|ref|YP_004795335.1| - 1.2e-21 76.6 0.2 2.3e-21 75.7 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|344211015|ref|YP_004795335.1| - 1.2e-15 58.7 0.1 2.3e-15 57.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|344211015|ref|YP_004795335.1| - 0.0057 16.7 0.1 0.011 15.8 0.1 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Usp PF00582.26 gi|344211016|ref|YP_004795336.1| - 7.6e-26 91.3 1.3 8.6e-26 91.1 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|344211016|ref|YP_004795336.1| - 0.027 13.9 0.2 0.035 13.5 0.2 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Usp PF00582.26 gi|344211017|ref|YP_004795337.1| - 2.5e-60 203.1 3.5 2.1e-30 106.1 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family HTH_40 PF14493.6 gi|344211017|ref|YP_004795337.1| - 0.052 14.0 0.0 6.6 7.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DnaJ PF00226.31 gi|344211018|ref|YP_004795338.1| - 5.9e-09 35.9 0.0 1e-08 35.2 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain DUF4947 PF16305.5 gi|344211018|ref|YP_004795338.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4947) PetG PF02529.15 gi|344211018|ref|YP_004795338.1| - 0.61 10.0 3.8 1.2 9.0 3.8 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 PAC2 PF09754.9 gi|344211019|ref|YP_004795339.1| - 1.7e-52 178.5 0.1 2e-52 178.3 0.1 1.0 1 0 0 1 1 1 1 PAC2 family NAD_binding_10 PF13460.6 gi|344211019|ref|YP_004795339.1| - 0.015 15.2 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Nop10p PF04135.12 gi|344211020|ref|YP_004795340.1| - 1.7e-23 82.4 0.3 1.9e-23 82.2 0.3 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family EIF_2_alpha PF07541.12 gi|344211021|ref|YP_004795341.1| - 1.8e-28 98.9 0.0 3.2e-28 98.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|344211021|ref|YP_004795341.1| - 2.3e-14 53.5 0.7 6e-14 52.1 0.7 1.6 1 0 0 1 1 1 1 S1 RNA binding domain cwf21 PF08312.12 gi|344211021|ref|YP_004795341.1| - 0.11 12.6 0.1 0.11 12.6 0.1 2.2 2 0 0 2 2 2 0 cwf21 domain DUF1494 PF07379.11 gi|344211021|ref|YP_004795341.1| - 0.18 11.6 0.1 0.77 9.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1494) Ribosomal_S27e PF01667.17 gi|344211022|ref|YP_004795342.1| - 3.3e-19 68.3 0.5 3.4e-19 68.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|344211022|ref|YP_004795342.1| - 0.00012 21.5 1.0 0.00017 21.0 1.0 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF4969 PF16339.5 gi|344211022|ref|YP_004795342.1| - 0.012 15.9 0.2 0.014 15.8 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4969) HypA PF01155.19 gi|344211022|ref|YP_004795342.1| - 0.022 14.8 0.5 0.025 14.6 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|344211022|ref|YP_004795342.1| - 0.023 14.6 2.8 0.28 11.2 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|344211022|ref|YP_004795342.1| - 0.048 13.5 1.5 0.064 13.1 1.5 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 CpXC PF14353.6 gi|344211022|ref|YP_004795342.1| - 0.056 13.5 1.5 1.4 9.0 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.6 gi|344211022|ref|YP_004795342.1| - 0.056 12.9 2.0 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|344211022|ref|YP_004795342.1| - 0.062 13.3 0.3 0.076 13.1 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|344211022|ref|YP_004795342.1| - 0.067 13.1 0.3 0.096 12.6 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|344211022|ref|YP_004795342.1| - 0.14 12.3 3.3 0.24 11.6 3.3 1.4 1 1 0 1 1 1 0 Zinc ribbon domain DUF3797 PF12677.7 gi|344211022|ref|YP_004795342.1| - 0.26 11.2 1.8 1.9 8.5 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) TFIIS_C PF01096.18 gi|344211022|ref|YP_004795342.1| - 0.31 10.9 3.1 16 5.4 3.2 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.19 gi|344211023|ref|YP_004795343.1| - 1.5e-26 92.7 1.7 1.8e-26 92.4 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|344211023|ref|YP_004795343.1| - 0.00046 19.5 0.6 0.84 9.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|344211023|ref|YP_004795343.1| - 0.0037 17.1 4.1 0.4 10.6 0.5 2.3 2 0 0 2 2 2 2 SprT-like zinc ribbon domain WCCH PF03716.14 gi|344211023|ref|YP_004795343.1| - 0.015 15.0 2.8 0.026 14.2 2.8 1.4 1 0 0 1 1 1 0 WCCH motif zinc_ribbon_10 PF10058.9 gi|344211023|ref|YP_004795343.1| - 0.023 14.4 0.9 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Terminase_GpA PF05876.12 gi|344211023|ref|YP_004795343.1| - 0.04 12.5 1.0 0.054 12.1 1.0 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-LITAF-like PF10601.9 gi|344211023|ref|YP_004795343.1| - 0.083 13.2 2.8 0.58 10.5 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|344211023|ref|YP_004795343.1| - 0.12 12.5 4.6 5.1 7.3 0.4 2.4 2 1 0 2 2 2 0 Zinc ribbon domain F-112 PF09645.10 gi|344211023|ref|YP_004795343.1| - 0.17 12.0 0.1 0.23 11.6 0.1 1.2 1 0 0 1 1 1 0 F-112 protein zf-Mss51 PF13824.6 gi|344211023|ref|YP_004795343.1| - 0.25 11.5 4.6 0.4 10.8 4.6 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2298 PF10060.9 gi|344211026|ref|YP_004795346.1| - 2.6e-142 475.0 32.4 2.6e-142 475.0 32.4 1.4 2 0 0 2 2 2 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.26 gi|344211027|ref|YP_004795347.1| - 4.2e-12 46.2 0.0 5.4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211027|ref|YP_004795347.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344211027|ref|YP_004795347.1| - 0.089 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 GtrA PF04138.14 gi|344211028|ref|YP_004795348.1| - 2e-21 76.4 7.1 2.7e-21 76.0 7.1 1.2 1 0 0 1 1 1 1 GtrA-like protein ABC2_membrane_5 PF13346.6 gi|344211029|ref|YP_004795349.1| - 0.051 13.1 0.0 0.073 12.6 0.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1616 PF07760.11 gi|344211029|ref|YP_004795349.1| - 0.056 12.8 1.2 0.059 12.8 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) DUF5134 PF17197.4 gi|344211029|ref|YP_004795349.1| - 0.37 10.7 8.0 0.74 9.7 2.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5134) PAP2 PF01569.21 gi|344211029|ref|YP_004795349.1| - 0.95 9.2 5.3 1.1 9.0 5.3 1.1 1 0 0 1 1 1 0 PAP2 superfamily Pribosyltran PF00156.27 gi|344211030|ref|YP_004795350.1| - 1.6e-12 47.2 1.6 2.1e-12 46.9 1.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|344211030|ref|YP_004795350.1| - 0.0012 18.3 0.1 0.0017 17.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Proton_antipo_M PF00361.20 gi|344211033|ref|YP_004795353.1| - 1e-39 136.5 11.7 2.8e-39 135.1 11.7 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|344211034|ref|YP_004795354.1| - 8.7e-59 199.1 14.0 1.6e-58 198.2 14.0 1.5 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|344211034|ref|YP_004795354.1| - 8.2e-06 25.8 0.2 2.5e-05 24.3 0.2 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|344211035|ref|YP_004795355.1| - 9.5e-60 202.3 22.8 9.5e-60 202.3 22.8 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|344211035|ref|YP_004795355.1| - 4.2e-08 32.8 10.5 4.2e-08 32.8 10.5 2.9 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|344211035|ref|YP_004795355.1| - 0.29 11.2 0.1 0.29 11.2 0.1 3.3 4 0 0 4 4 4 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|344211036|ref|YP_004795356.1| - 1e-27 95.8 1.1 1.2e-27 95.6 1.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GPDPase_memb PF10110.9 gi|344211036|ref|YP_004795356.1| - 0.0038 16.0 4.3 0.0052 15.6 4.3 1.2 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF2207 PF09972.9 gi|344211036|ref|YP_004795356.1| - 0.21 10.3 1.1 0.25 10.1 1.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MnhB PF04039.13 gi|344211037|ref|YP_004795357.1| - 1.2e-23 83.8 17.3 1.2e-23 83.8 17.3 1.4 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.6 gi|344211038|ref|YP_004795358.1| - 5.4e-18 64.9 10.8 5.4e-18 64.9 10.8 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|344211038|ref|YP_004795358.1| - 0.00015 21.5 8.3 0.00021 21.0 8.3 1.3 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF5536 PF17688.1 gi|344211038|ref|YP_004795358.1| - 0.015 15.2 0.1 0.022 14.6 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5536) PhaG_MnhG_YufB PF03334.14 gi|344211039|ref|YP_004795359.1| - 3.1e-25 88.2 9.0 3.6e-25 88.0 9.0 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|344211040|ref|YP_004795360.1| - 8.7e-19 67.7 2.4 8.7e-19 67.7 2.4 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF2105 PF09878.9 gi|344211040|ref|YP_004795360.1| - 0.025 14.3 1.3 0.028 14.2 1.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) 3Beta_HSD PF01073.19 gi|344211040|ref|YP_004795360.1| - 0.046 12.7 0.0 0.055 12.5 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Caps_synth_CapC PF14102.6 gi|344211040|ref|YP_004795360.1| - 0.15 12.5 3.7 2 8.9 3.8 1.9 1 1 0 1 1 1 0 Capsule biosynthesis CapC MNHE PF01899.16 gi|344211041|ref|YP_004795361.1| - 4.7e-30 104.3 0.2 6.8e-30 103.7 0.2 1.3 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit DFP PF04127.15 gi|344211042|ref|YP_004795362.1| - 3.9e-50 170.3 5.5 9.1e-50 169.1 0.8 2.5 3 0 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|344211042|ref|YP_004795362.1| - 1.8e-33 115.5 0.3 3.1e-33 114.7 0.3 1.4 1 0 0 1 1 1 1 Flavoprotein PALP PF00291.25 gi|344211042|ref|YP_004795362.1| - 0.016 14.7 2.2 0.016 14.7 2.2 2.5 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme DUF58 PF01882.18 gi|344211044|ref|YP_004795364.1| - 5.2e-13 49.1 0.8 1.9e-12 47.3 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|344211044|ref|YP_004795364.1| - 6.7e-11 42.3 3.0 8.2e-11 42.1 0.6 2.4 1 1 1 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|344211044|ref|YP_004795364.1| - 5.6e-06 26.5 2.3 7.6e-06 26.1 0.3 2.3 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|344211044|ref|YP_004795364.1| - 0.00012 21.5 0.0 0.00022 20.7 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|344211044|ref|YP_004795364.1| - 0.0003 21.0 0.0 0.00072 19.8 0.0 1.6 1 0 0 1 1 1 1 CARDB DUF4129 PF13559.6 gi|344211046|ref|YP_004795366.1| - 1.3e-11 44.6 5.8 1.3e-11 44.6 5.8 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Peptidase_M48 PF01435.18 gi|344211047|ref|YP_004795367.1| - 5.8e-28 98.0 0.0 5e-16 59.1 0.0 2.1 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344211047|ref|YP_004795367.1| - 1.5e-05 24.4 0.7 0.00014 21.2 0.5 2.2 1 1 1 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|344211047|ref|YP_004795367.1| - 0.062 13.2 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF4157 PF13699.6 gi|344211047|ref|YP_004795367.1| - 0.087 13.1 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Pyr_redox_2 PF07992.14 gi|344211048|ref|YP_004795368.1| - 3.4e-14 52.8 0.7 4.4e-07 29.4 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344211048|ref|YP_004795368.1| - 1.5e-10 40.8 3.6 2.3e-05 23.7 1.7 2.4 1 1 2 3 3 3 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|344211048|ref|YP_004795368.1| - 5.9e-06 25.8 0.1 1.6e-05 24.3 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|344211048|ref|YP_004795368.1| - 3.4e-05 23.6 7.3 0.064 12.8 4.3 2.8 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|344211048|ref|YP_004795368.1| - 9.1e-05 21.7 0.1 0.00017 20.8 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|344211048|ref|YP_004795368.1| - 0.00011 21.4 0.0 0.014 14.5 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|344211048|ref|YP_004795368.1| - 0.00023 20.6 1.5 0.00039 19.9 1.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|344211048|ref|YP_004795368.1| - 0.00025 21.2 0.2 0.0053 17.0 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|344211048|ref|YP_004795368.1| - 0.00025 19.9 0.0 0.0049 15.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|344211048|ref|YP_004795368.1| - 0.002 17.4 0.3 0.0039 16.4 0.3 1.4 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|344211048|ref|YP_004795368.1| - 0.0028 16.6 0.2 1.3 7.8 0.6 2.1 2 0 0 2 2 2 2 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|344211048|ref|YP_004795368.1| - 0.0088 15.4 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|344211048|ref|YP_004795368.1| - 0.017 15.1 2.8 0.38 10.7 0.0 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|344211048|ref|YP_004795368.1| - 0.027 15.0 0.2 0.076 13.6 0.2 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|344211048|ref|YP_004795368.1| - 0.061 12.6 1.4 0.14 11.4 1.1 1.6 1 1 1 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|344211048|ref|YP_004795368.1| - 0.088 12.7 0.1 2.3 8.1 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AAA PF00004.29 gi|344211049|ref|YP_004795369.1| - 2.6e-44 150.9 0.1 2.6e-44 150.9 0.1 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|344211049|ref|YP_004795369.1| - 7.2e-12 44.9 0.9 2.8e-11 43.1 0.9 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|344211049|ref|YP_004795369.1| - 2.3e-09 37.6 2.1 3.5e-09 37.0 0.0 2.5 3 0 0 3 3 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|344211049|ref|YP_004795369.1| - 1.8e-07 31.0 0.1 4.2e-07 29.8 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|344211049|ref|YP_004795369.1| - 8.9e-06 25.7 0.3 0.00012 22.0 0.3 2.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|344211049|ref|YP_004795369.1| - 9.9e-06 26.0 4.5 0.022 15.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|344211049|ref|YP_004795369.1| - 1.5e-05 25.4 8.3 0.00026 21.4 0.0 3.7 3 2 0 4 4 4 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211049|ref|YP_004795369.1| - 4.7e-05 23.7 2.5 0.0012 19.1 0.0 2.9 2 1 1 3 3 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|344211049|ref|YP_004795369.1| - 0.00013 21.8 0.6 0.00029 20.7 0.1 1.9 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain GrpE PF01025.19 gi|344211049|ref|YP_004795369.1| - 0.00024 20.8 6.9 0.00024 20.8 6.9 2.1 2 0 0 2 2 1 1 GrpE TIP49 PF06068.13 gi|344211049|ref|YP_004795369.1| - 0.00027 20.3 0.9 0.00092 18.5 0.0 2.3 3 1 0 3 3 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|344211049|ref|YP_004795369.1| - 0.00047 19.4 0.0 0.0013 17.9 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|344211049|ref|YP_004795369.1| - 0.00057 20.1 0.3 0.0023 18.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|344211049|ref|YP_004795369.1| - 0.00064 19.3 1.6 0.057 12.9 0.0 2.6 2 1 0 2 2 2 1 P-loop containing dynein motor region AAA_14 PF13173.6 gi|344211049|ref|YP_004795369.1| - 0.00066 19.7 0.4 0.0024 17.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain TUDOR PF00567.24 gi|344211049|ref|YP_004795369.1| - 0.0011 19.0 0.1 0.0036 17.3 0.1 1.9 1 0 0 1 1 1 1 Tudor domain NACHT PF05729.12 gi|344211049|ref|YP_004795369.1| - 0.0013 18.6 0.2 0.042 13.8 0.0 2.5 1 1 0 2 2 2 1 NACHT domain AAA_3 PF07726.11 gi|344211049|ref|YP_004795369.1| - 0.002 18.0 0.1 0.033 14.0 0.0 2.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|344211049|ref|YP_004795369.1| - 0.0023 17.6 0.2 0.039 13.7 0.2 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|344211049|ref|YP_004795369.1| - 0.0024 17.3 0.0 0.0074 15.7 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|344211049|ref|YP_004795369.1| - 0.0024 18.4 2.8 0.02 15.5 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|344211049|ref|YP_004795369.1| - 0.0029 17.5 2.1 0.11 12.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|344211049|ref|YP_004795369.1| - 0.0047 16.1 0.0 0.033 13.4 0.0 2.4 2 1 0 2 2 2 1 NB-ARC domain IstB_IS21 PF01695.17 gi|344211049|ref|YP_004795369.1| - 0.0051 16.6 0.0 0.014 15.1 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein TsaE PF02367.17 gi|344211049|ref|YP_004795369.1| - 0.0096 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Fmp27_WPPW PF10359.9 gi|344211049|ref|YP_004795369.1| - 0.012 14.5 5.7 0.023 13.6 5.7 1.5 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain RNA_helicase PF00910.22 gi|344211049|ref|YP_004795369.1| - 0.017 15.5 0.0 0.053 13.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|344211049|ref|YP_004795369.1| - 0.018 15.3 2.0 0.03 14.6 0.0 2.5 3 0 0 3 3 1 0 AAA domain Torsin PF06309.11 gi|344211049|ref|YP_004795369.1| - 0.019 15.0 0.1 0.059 13.5 0.0 1.8 2 0 0 2 2 1 0 Torsin Atg14 PF10186.9 gi|344211049|ref|YP_004795369.1| - 0.02 14.0 1.9 0.029 13.5 1.9 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2334 PF10096.9 gi|344211049|ref|YP_004795369.1| - 0.027 14.1 0.1 0.048 13.3 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) CPT PF07931.12 gi|344211049|ref|YP_004795369.1| - 0.029 14.2 0.1 0.069 13.0 0.0 1.8 2 0 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|344211049|ref|YP_004795369.1| - 0.039 13.7 0.3 0.14 11.8 0.3 2.0 1 1 0 1 1 1 0 AAA domain Fungal_TACC PF12709.7 gi|344211049|ref|YP_004795369.1| - 0.04 14.4 4.4 0.14 12.6 4.4 2.0 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins Cep57_CLD_2 PF14197.6 gi|344211049|ref|YP_004795369.1| - 0.042 13.9 9.7 0.11 12.6 9.7 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 NTPase_1 PF03266.15 gi|344211049|ref|YP_004795369.1| - 0.043 13.7 3.2 0.79 9.6 0.1 3.0 2 2 1 3 3 3 0 NTPase AAA_24 PF13479.6 gi|344211049|ref|YP_004795369.1| - 0.088 12.5 0.1 0.088 12.5 0.1 2.5 3 2 0 3 3 2 0 AAA domain bZIP_1 PF00170.21 gi|344211049|ref|YP_004795369.1| - 0.095 12.8 13.5 0.18 11.9 2.7 2.7 1 1 1 2 2 2 0 bZIP transcription factor ABC_tran PF00005.27 gi|344211049|ref|YP_004795369.1| - 0.12 12.9 6.6 0.25 11.9 0.0 3.1 2 1 0 2 2 1 0 ABC transporter DUF4438 PF14505.6 gi|344211049|ref|YP_004795369.1| - 0.13 11.2 0.1 0.2 10.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) ATPase PF06745.13 gi|344211049|ref|YP_004795369.1| - 0.24 10.7 7.0 0.94 8.8 0.0 3.4 2 1 1 3 3 3 0 KaiC DUF2075 PF09848.9 gi|344211049|ref|YP_004795369.1| - 0.5 9.5 0.0 0.5 9.5 0.0 2.5 3 0 0 3 3 2 0 Uncharacterized conserved protein (DUF2075) ADIP PF11559.8 gi|344211049|ref|YP_004795369.1| - 0.67 10.0 11.3 0.13 12.4 7.4 1.7 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding TMF_TATA_bd PF12325.8 gi|344211049|ref|YP_004795369.1| - 0.68 10.2 11.4 0.49 10.6 8.3 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding AAA_25 PF13481.6 gi|344211049|ref|YP_004795369.1| - 0.86 9.2 11.5 0.67 9.5 0.1 3.8 3 2 1 4 4 4 0 AAA domain FlaC_arch PF05377.11 gi|344211049|ref|YP_004795369.1| - 1.3 9.5 6.4 43 4.6 0.0 3.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GAS PF13851.6 gi|344211049|ref|YP_004795369.1| - 1.9 7.8 14.4 3.8 6.8 14.2 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Dzip-like_N PF13815.6 gi|344211049|ref|YP_004795369.1| - 1.9 8.5 7.4 6.8 6.7 7.4 2.0 1 0 0 1 1 1 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal DUF4407 PF14362.6 gi|344211049|ref|YP_004795369.1| - 2 7.7 7.7 0.92 8.8 5.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) SlyX PF04102.12 gi|344211049|ref|YP_004795369.1| - 2.6 8.7 11.5 96 3.7 10.5 3.1 1 1 0 1 1 1 0 SlyX ZapB PF06005.12 gi|344211049|ref|YP_004795369.1| - 4.7 7.7 17.0 32 5.1 15.3 2.9 2 1 0 2 2 1 0 Cell division protein ZapB Csm1_N PF18504.1 gi|344211049|ref|YP_004795369.1| - 8.2 6.9 13.0 3.3 8.1 3.8 3.2 2 1 1 3 3 2 0 Csm1 N-terminal domain DUF420 PF04238.12 gi|344211050|ref|YP_004795370.1| - 2.4e-32 112.0 12.8 2.4e-32 112.0 12.8 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|344211050|ref|YP_004795370.1| - 0.0019 18.4 4.7 0.0019 18.4 4.7 2.3 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) YesK PF14150.6 gi|344211050|ref|YP_004795370.1| - 0.025 14.8 0.6 0.025 14.8 0.6 3.0 3 1 1 4 4 4 0 YesK-like protein Cytochrom_B561 PF03188.16 gi|344211050|ref|YP_004795370.1| - 0.17 12.1 16.3 0.11 12.6 6.8 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 AC_N PF16214.5 gi|344211050|ref|YP_004795370.1| - 0.26 10.4 8.8 0.32 10.1 8.8 1.1 1 0 0 1 1 1 0 Adenylyl cyclase N-terminal extracellular and transmembrane region HD PF01966.22 gi|344211051|ref|YP_004795371.1| - 1.4e-10 41.4 1.4 4.6e-10 39.8 1.4 2.0 1 0 0 1 1 1 1 HD domain Clp_N PF02861.20 gi|344211051|ref|YP_004795371.1| - 0.044 13.9 2.0 6.7 6.9 0.0 3.2 3 0 0 3 3 3 0 Clp amino terminal domain, pathogenicity island component ELYS PF13934.6 gi|344211051|ref|YP_004795371.1| - 0.078 12.9 0.4 0.15 12.0 0.4 1.4 1 0 0 1 1 1 0 Nuclear pore complex assembly Amidohydro_1 PF01979.20 gi|344211052|ref|YP_004795372.1| - 1.3e-26 93.7 0.0 2e-17 63.5 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|344211052|ref|YP_004795372.1| - 7.4e-10 38.7 0.0 1.1e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|344211052|ref|YP_004795372.1| - 2.2e-06 27.4 6.7 2.5e-05 24.0 1.5 2.4 1 1 2 3 3 3 2 Amidohydrolase family SHOCT PF09851.9 gi|344211053|ref|YP_004795373.1| - 1.5e-07 31.0 0.6 2.8e-07 30.1 0.6 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|344211053|ref|YP_004795373.1| - 0.0001 22.3 0.5 0.00022 21.2 0.5 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) VbhA PF18495.1 gi|344211053|ref|YP_004795373.1| - 0.00049 19.9 0.4 0.00096 19.0 0.4 1.6 1 0 0 1 1 1 1 Antitoxin VbhA Phage_holin_3_6 PF07332.11 gi|344211053|ref|YP_004795373.1| - 0.13 12.4 8.3 0.18 11.8 8.3 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III ABC2_membrane_3 PF12698.7 gi|344211053|ref|YP_004795373.1| - 4.8 6.2 9.5 6.1 5.8 9.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Usp PF00582.26 gi|344211054|ref|YP_004795374.1| - 3.9e-39 134.4 0.3 4.5e-39 134.2 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family FlgO PF17680.1 gi|344211054|ref|YP_004795374.1| - 0.046 13.4 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 FlgO protein Transketolase_C PF02780.20 gi|344211054|ref|YP_004795374.1| - 0.096 12.6 0.2 4.8 7.1 0.1 2.4 2 1 0 2 2 2 0 Transketolase, C-terminal domain BPL_LplA_LipB PF03099.19 gi|344211055|ref|YP_004795375.1| - 2e-17 63.3 0.0 3e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|344211055|ref|YP_004795375.1| - 1.7e-11 43.8 0.2 5.8e-11 42.1 0.2 1.9 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain HTH_11 PF08279.12 gi|344211055|ref|YP_004795375.1| - 4.8e-11 42.4 0.0 1e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344211055|ref|YP_004795375.1| - 1.7e-06 28.0 0.0 3.5e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344211055|ref|YP_004795375.1| - 4.4e-06 26.1 0.0 1.2e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344211055|ref|YP_004795375.1| - 1.7e-05 24.6 0.0 2.9e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344211055|ref|YP_004795375.1| - 0.00016 21.5 0.1 0.00068 19.5 0.0 2.1 2 0 0 2 2 2 1 MarR family BPL_LplA_LipB_2 PF16917.5 gi|344211055|ref|YP_004795375.1| - 0.00038 20.1 0.3 0.0007 19.2 0.3 1.6 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_1 PF00126.27 gi|344211055|ref|YP_004795375.1| - 0.017 15.1 0.9 0.23 11.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|344211055|ref|YP_004795375.1| - 0.024 14.5 0.0 0.06 13.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_39 PF14090.6 gi|344211055|ref|YP_004795375.1| - 0.027 14.2 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344211055|ref|YP_004795375.1| - 0.088 12.7 0.4 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.12 gi|344211055|ref|YP_004795375.1| - 0.14 12.0 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain CPSase_L_D2 PF02786.17 gi|344211056|ref|YP_004795376.1| - 4.1e-68 229.0 0.1 8.8e-68 227.9 0.1 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.19 gi|344211056|ref|YP_004795376.1| - 1.8e-33 114.8 0.0 3.7e-33 113.8 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_carb_N PF00289.22 gi|344211056|ref|YP_004795376.1| - 5.6e-29 100.9 0.3 1.6e-28 99.4 0.4 1.8 2 0 0 2 2 2 1 Biotin carboxylase, N-terminal domain Biotin_lipoyl PF00364.22 gi|344211056|ref|YP_004795376.1| - 1.5e-18 66.4 4.1 1.5e-18 66.4 4.1 2.1 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|344211056|ref|YP_004795376.1| - 3.1e-10 39.7 4.3 4e-07 29.7 0.0 2.8 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|344211056|ref|YP_004795376.1| - 3.9e-06 26.5 0.0 7.3e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|344211056|ref|YP_004795376.1| - 5.6e-06 26.2 0.0 1.1e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_3 PF13437.6 gi|344211056|ref|YP_004795376.1| - 0.00012 22.8 0.3 0.95 10.2 0.1 2.6 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|344211056|ref|YP_004795376.1| - 0.00016 21.0 0.3 0.13 11.4 0.1 2.4 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion Dala_Dala_lig_C PF07478.13 gi|344211056|ref|YP_004795376.1| - 0.0022 17.6 0.1 0.007 15.9 0.0 1.8 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus GCV_H PF01597.19 gi|344211056|ref|YP_004795376.1| - 0.015 15.2 1.4 0.041 13.8 1.4 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.20 gi|344211056|ref|YP_004795376.1| - 0.058 13.2 0.6 0.3 10.9 0.1 2.3 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Carboxyl_trans PF01039.22 gi|344211058|ref|YP_004795378.1| - 7.6e-197 654.8 0.1 8.7e-197 654.6 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|344211058|ref|YP_004795378.1| - 0.006 16.1 0.6 0.11 12.0 0.0 2.3 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) UDG PF03167.19 gi|344211059|ref|YP_004795379.1| - 1.2e-10 41.6 0.0 1.3e-10 41.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|344211059|ref|YP_004795379.1| - 0.048 13.2 0.0 0.069 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) MarR_2 PF12802.7 gi|344211060|ref|YP_004795380.1| - 2.2e-06 27.5 0.7 6.7e-06 25.9 0.2 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344211060|ref|YP_004795380.1| - 5.1e-05 23.0 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|344211060|ref|YP_004795380.1| - 0.00018 21.3 0.0 0.00035 20.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344211060|ref|YP_004795380.1| - 0.00028 20.8 0.1 0.00075 19.4 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344211060|ref|YP_004795380.1| - 0.0021 17.8 0.1 0.0021 17.8 0.1 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain DUF1724 PF08350.10 gi|344211060|ref|YP_004795380.1| - 0.0024 18.0 0.0 0.0048 17.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_20 PF12840.7 gi|344211060|ref|YP_004795380.1| - 0.0065 16.5 1.3 0.032 14.3 0.1 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|344211060|ref|YP_004795380.1| - 0.0075 16.4 0.0 0.035 14.2 0.0 2.0 2 0 0 2 2 2 1 Trp repressor protein HTH_28 PF13518.6 gi|344211060|ref|YP_004795380.1| - 0.024 14.7 0.1 0.058 13.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TNRC6-PABC_bdg PF16608.5 gi|344211060|ref|YP_004795380.1| - 0.14 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 TNRC6-PABC binding domain EamA PF00892.20 gi|344211061|ref|YP_004795381.1| - 3.1e-36 124.5 38.7 1.8e-20 73.5 10.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family SNF PF00209.18 gi|344211062|ref|YP_004795382.1| - 3.6e-49 167.9 31.5 3.3e-25 88.8 15.7 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short_C2 PF13561.6 gi|344211064|ref|YP_004795384.1| - 6.2e-41 140.5 0.0 1.4e-40 139.3 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344211064|ref|YP_004795384.1| - 5.5e-36 123.9 0.0 6.5e-36 123.6 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|344211064|ref|YP_004795384.1| - 6e-06 25.9 0.2 2.6e-05 23.8 0.0 2.1 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|344211064|ref|YP_004795384.1| - 0.0012 18.7 0.2 0.0036 17.2 0.2 1.8 1 1 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|344211064|ref|YP_004795384.1| - 0.0036 16.7 0.0 0.005 16.3 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|344211064|ref|YP_004795384.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain ADH_zinc_N_2 PF13602.6 gi|344211065|ref|YP_004795385.1| - 4e-16 60.3 0.2 6.8e-16 59.5 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|344211065|ref|YP_004795385.1| - 1.9e-11 44.0 0.3 3.2e-11 43.3 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|344211065|ref|YP_004795385.1| - 1e-09 38.3 0.0 2.7e-07 30.4 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain YAcAr PF10686.9 gi|344211065|ref|YP_004795385.1| - 0.03 14.3 0.2 0.058 13.4 0.2 1.5 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family Gly_rich_SFCGS PF14272.6 gi|344211065|ref|YP_004795385.1| - 0.11 12.5 0.7 0.32 11.0 0.7 1.8 1 0 0 1 1 1 0 Glycine-rich SFCGS DUF2201 PF09967.9 gi|344211065|ref|YP_004795385.1| - 0.15 12.2 0.0 3.7 7.7 0.0 2.2 2 0 0 2 2 2 0 VWA-like domain (DUF2201) MCPsignal PF00015.21 gi|344211066|ref|YP_004795386.1| - 5.7e-42 143.4 22.6 5.7e-42 143.4 22.6 5.3 2 2 2 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344211066|ref|YP_004795386.1| - 1.1e-10 41.7 0.3 1.1e-10 41.7 0.3 5.5 5 1 0 5 5 3 1 HAMP domain dCache_1 PF02743.18 gi|344211066|ref|YP_004795386.1| - 1.3e-09 38.3 0.0 1.3e-09 38.3 0.0 4.4 3 2 2 5 5 5 1 Cache domain DUF948 PF06103.11 gi|344211066|ref|YP_004795386.1| - 6.6e-07 29.5 49.1 0.0089 16.3 2.9 7.3 4 2 3 7 7 7 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|344211066|ref|YP_004795386.1| - 0.0014 18.7 33.0 0.031 14.3 1.8 5.6 3 2 2 5 5 5 2 Protein of unknown function (DUF1664) Htr2 PF17909.1 gi|344211066|ref|YP_004795386.1| - 0.0095 16.2 1.0 0.0095 16.2 1.0 3.9 5 0 0 5 5 3 1 Htr2 transmembrane domain Prominin PF05478.11 gi|344211066|ref|YP_004795386.1| - 0.058 11.4 14.9 0.032 12.2 5.1 2.4 1 1 0 2 2 2 0 Prominin DUF3584 PF12128.8 gi|344211066|ref|YP_004795386.1| - 0.074 10.6 35.2 0.23 8.9 35.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) sCache_3_2 PF17203.4 gi|344211066|ref|YP_004795386.1| - 0.19 11.9 0.0 0.19 11.9 0.0 4.2 4 1 0 4 4 4 0 Single cache domain 3 Fez1 PF06818.15 gi|344211066|ref|YP_004795386.1| - 0.38 11.2 28.1 0.39 11.1 4.0 3.7 3 0 0 3 3 3 0 Fez1 CorA PF01544.18 gi|344211066|ref|YP_004795386.1| - 0.41 9.9 22.5 0.39 10.0 1.8 4.3 1 1 4 5 5 5 0 CorA-like Mg2+ transporter protein PspB PF06667.12 gi|344211066|ref|YP_004795386.1| - 0.62 10.2 8.2 0.6 10.2 0.2 3.9 3 0 0 3 3 2 0 Phage shock protein B Serine_rich PF08824.10 gi|344211066|ref|YP_004795386.1| - 0.64 10.0 10.1 9.3 6.2 0.3 3.6 2 2 1 3 3 3 0 Serine rich protein interaction domain Laminin_II PF06009.12 gi|344211066|ref|YP_004795386.1| - 0.86 9.6 41.7 2 8.4 1.5 5.7 2 2 4 6 6 6 0 Laminin Domain II SKA1 PF07160.12 gi|344211066|ref|YP_004795386.1| - 1.1 9.0 24.1 0.12 12.3 1.0 3.4 2 1 1 3 3 3 0 Spindle and kinetochore-associated protein 1 Jnk-SapK_ap_N PF09744.9 gi|344211066|ref|YP_004795386.1| - 1.2 9.4 33.3 0.41 10.9 3.9 4.6 2 2 3 5 5 5 0 JNK_SAPK-associated protein-1 LOH1CR12 PF10158.9 gi|344211066|ref|YP_004795386.1| - 1.5 8.9 15.2 1.1 9.3 1.3 4.3 2 2 3 5 5 5 0 Tumour suppressor protein CALCOCO1 PF07888.11 gi|344211066|ref|YP_004795386.1| - 2.9 6.7 38.6 3.9 6.2 7.4 2.6 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like MtrB PF05440.12 gi|344211066|ref|YP_004795386.1| - 3.8 8.0 6.9 26 5.3 0.1 4.5 3 2 1 5 5 4 0 Tetrahydromethanopterin S-methyltransferase subunit B Fzo_mitofusin PF04799.13 gi|344211066|ref|YP_004795386.1| - 5.7 6.5 24.3 0.12 12.0 0.4 5.1 2 2 3 5 5 5 0 fzo-like conserved region MAD PF05557.13 gi|344211066|ref|YP_004795386.1| - 6.7 5.0 30.8 0.59 8.4 4.2 2.2 2 0 0 2 2 2 0 Mitotic checkpoint protein Bac_rhodopsin PF01036.18 gi|344211067|ref|YP_004795387.1| - 4e-63 213.0 27.1 4.6e-63 212.8 27.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein TFIIB PF00382.19 gi|344211069|ref|YP_004795389.1| - 3.8e-48 161.4 1.8 1e-25 89.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344211069|ref|YP_004795389.1| - 4.5e-15 54.9 3.7 8.3e-15 54.0 3.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|344211069|ref|YP_004795389.1| - 0.021 14.6 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Cyclin, N-terminal domain DUF2318 PF10080.9 gi|344211069|ref|YP_004795389.1| - 0.024 14.8 0.3 0.054 13.6 0.3 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) OrfB_Zn_ribbon PF07282.11 gi|344211069|ref|YP_004795389.1| - 0.024 14.5 2.6 0.039 13.9 1.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Cyclin_C PF02984.19 gi|344211069|ref|YP_004795389.1| - 0.035 14.2 0.0 1 9.5 0.0 2.2 1 1 1 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|344211069|ref|YP_004795389.1| - 0.067 12.7 1.1 0.37 10.4 0.1 2.8 3 1 0 3 3 3 0 Sigma-70, region 4 RB_B PF01857.20 gi|344211069|ref|YP_004795389.1| - 0.11 12.5 0.0 0.41 10.7 0.0 1.7 1 1 0 2 2 2 0 Retinoblastoma-associated protein B domain PhnA_Zn_Ribbon PF08274.12 gi|344211069|ref|YP_004795389.1| - 3.1 7.8 6.3 10 6.2 6.3 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon SpoU_methylase PF00588.19 gi|344211071|ref|YP_004795391.1| - 8e-29 100.6 0.0 1.1e-28 100.2 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Lactamase_B_6 PF16661.5 gi|344211071|ref|YP_004795391.1| - 0.22 11.0 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain BAT PF15915.5 gi|344211072|ref|YP_004795392.1| - 5.1e-37 127.2 6.7 5.1e-37 127.2 6.7 3.1 3 1 1 4 4 4 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|344211072|ref|YP_004795392.1| - 1.6e-24 86.2 1.2 1.1e-13 51.4 0.1 3.3 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.6 gi|344211072|ref|YP_004795392.1| - 5.2e-19 68.9 0.1 2.2e-09 37.7 0.0 2.7 3 0 0 3 3 2 2 GAF domain GAF_2 PF13185.6 gi|344211072|ref|YP_004795392.1| - 3.7e-18 66.2 3.1 5e-08 33.3 0.1 3.1 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.12 gi|344211072|ref|YP_004795392.1| - 1.4e-17 63.2 0.0 3.4e-17 62.0 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.26 gi|344211072|ref|YP_004795392.1| - 1.1e-13 51.9 0.2 1.9e-10 41.5 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|344211072|ref|YP_004795392.1| - 2e-10 40.7 0.0 1.9e-07 31.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|344211072|ref|YP_004795392.1| - 3.6e-08 33.6 0.0 0.00056 20.1 0.0 2.6 2 0 0 2 2 2 2 PAS domain HTH_20 PF12840.7 gi|344211072|ref|YP_004795392.1| - 0.0012 18.8 0.1 0.0077 16.3 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|344211072|ref|YP_004795392.1| - 0.0077 16.0 0.0 0.031 14.1 0.0 2.0 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 gi|344211072|ref|YP_004795392.1| - 0.0099 15.4 0.0 0.028 14.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PAS_10 PF13596.6 gi|344211072|ref|YP_004795392.1| - 0.052 14.1 0.0 0.61 10.7 0.0 2.6 3 0 0 3 3 2 0 PAS domain HTH_AsnC-type PF13404.6 gi|344211072|ref|YP_004795392.1| - 0.053 13.4 0.1 0.36 10.7 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|344211072|ref|YP_004795392.1| - 0.073 13.0 0.0 0.63 10.0 0.0 2.6 2 0 0 2 2 2 0 MarR family HTH_8 PF02954.19 gi|344211072|ref|YP_004795392.1| - 0.09 12.6 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family PAS_3 PF08447.12 gi|344211072|ref|YP_004795392.1| - 0.1 12.9 0.0 1.4 9.3 0.0 2.5 2 0 0 2 2 2 0 PAS fold GatB_N PF02934.15 gi|344211075|ref|YP_004795395.1| - 2e-65 220.9 0.0 2.5e-65 220.6 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|344211075|ref|YP_004795395.1| - 7.6e-19 68.1 0.0 1.3e-18 67.3 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|344211075|ref|YP_004795395.1| - 9.7e-16 57.8 0.0 1.9e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|344211075|ref|YP_004795395.1| - 0.023 14.8 0.2 0.042 13.9 0.2 1.4 1 0 0 1 1 1 0 Yqey-like protein potato_inhibit PF00280.18 gi|344211076|ref|YP_004795396.1| - 0.13 13.0 0.4 0.47 11.2 0.1 2.1 3 0 0 3 3 3 0 Potato inhibitor I family Acetyltransf_1 PF00583.25 gi|344211078|ref|YP_004795398.1| - 1e-18 67.7 0.1 1.2e-18 67.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344211078|ref|YP_004795398.1| - 1.4e-18 67.0 0.0 1.9e-18 66.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211078|ref|YP_004795398.1| - 2.1e-14 53.7 0.1 3.1e-14 53.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344211078|ref|YP_004795398.1| - 4.4e-09 36.6 0.0 5.3e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211078|ref|YP_004795398.1| - 1.1e-08 34.9 0.0 1.8e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|344211078|ref|YP_004795398.1| - 2.3e-08 34.2 0.0 6.4e-08 32.7 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344211078|ref|YP_004795398.1| - 1e-05 26.3 0.0 1.2e-05 26.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|344211078|ref|YP_004795398.1| - 1.3e-05 25.4 0.1 1.4e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|344211078|ref|YP_004795398.1| - 0.0014 18.6 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|344211078|ref|YP_004795398.1| - 0.0045 16.7 0.0 0.0057 16.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|344211078|ref|YP_004795398.1| - 0.0076 16.4 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|344211078|ref|YP_004795398.1| - 0.028 13.9 0.0 0.033 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative acetyl-transferase DUF2156 PF09924.9 gi|344211078|ref|YP_004795398.1| - 0.029 13.4 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) AstA PF04958.12 gi|344211078|ref|YP_004795398.1| - 0.098 11.2 0.0 2.3 6.7 0.0 2.2 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit Acetyltransf_16 PF05301.11 gi|344211078|ref|YP_004795398.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 DUF4821 PF16092.5 gi|344211078|ref|YP_004795398.1| - 0.15 11.7 0.0 0.42 10.2 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4821) Lyase_1 PF00206.20 gi|344211079|ref|YP_004795399.1| - 3.9e-105 351.7 0.0 6e-105 351.1 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|344211079|ref|YP_004795399.1| - 7.3e-25 87.1 0.4 2.1e-24 85.7 0.4 1.9 1 0 0 1 1 1 1 Fumarase C C-terminus ADSL_C PF10397.9 gi|344211079|ref|YP_004795399.1| - 0.03 14.9 0.4 0.03 14.9 0.4 2.8 3 1 1 4 4 4 0 Adenylosuccinate lyase C-terminus Capsule_synth PF05159.14 gi|344211079|ref|YP_004795399.1| - 0.039 13.4 0.0 0.5 9.8 0.0 2.1 2 0 0 2 2 2 0 Capsule polysaccharide biosynthesis protein BPD_transp_1 PF00528.22 gi|344211080|ref|YP_004795400.1| - 6.1e-19 68.5 20.2 6.1e-19 68.5 20.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344211081|ref|YP_004795401.1| - 2.1e-13 50.4 18.1 2.1e-13 50.4 18.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.16 gi|344211081|ref|YP_004795401.1| - 0.00059 19.6 3.9 0.0045 16.7 1.1 3.1 3 0 0 3 3 3 1 MotA/TolQ/ExbB proton channel family DUF21 PF01595.20 gi|344211081|ref|YP_004795401.1| - 5.7 6.6 9.8 0.26 11.0 2.2 2.3 2 0 0 2 2 2 0 Cyclin M transmembrane N-terminal domain ABC_tran PF00005.27 gi|344211082|ref|YP_004795402.1| - 1e-33 116.8 0.0 2.3e-33 115.6 0.0 1.6 2 0 0 2 2 1 1 ABC transporter OB_MalK PF17912.1 gi|344211082|ref|YP_004795402.1| - 2.3e-09 38.0 0.0 1.5e-08 35.3 0.0 2.4 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|344211082|ref|YP_004795402.1| - 1.4e-07 31.6 0.0 3.7e-07 30.2 0.0 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|344211082|ref|YP_004795402.1| - 1.5e-05 25.0 0.0 0.19 11.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211082|ref|YP_004795402.1| - 0.0001 21.8 0.1 0.00036 20.0 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344211082|ref|YP_004795402.1| - 0.00068 19.9 0.1 0.0015 18.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344211082|ref|YP_004795402.1| - 0.0037 17.2 0.0 0.0087 16.0 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|344211082|ref|YP_004795402.1| - 0.0037 17.2 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|344211082|ref|YP_004795402.1| - 0.0043 16.8 0.0 0.064 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.17 gi|344211082|ref|YP_004795402.1| - 0.0071 16.6 0.0 0.038 14.3 0.0 2.2 2 0 0 2 2 2 1 TOBE domain AAA_16 PF13191.6 gi|344211082|ref|YP_004795402.1| - 0.0091 16.4 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|344211082|ref|YP_004795402.1| - 0.039 14.4 0.0 0.2 12.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|344211082|ref|YP_004795402.1| - 0.042 13.4 0.0 3.5 7.2 0.0 2.8 3 1 0 3 3 3 0 AAA domain CysA_C_terminal PF17850.1 gi|344211082|ref|YP_004795402.1| - 0.042 14.4 0.0 0.17 12.5 0.0 2.1 1 0 0 1 1 1 0 CysA C-terminal regulatory domain AAA_29 PF13555.6 gi|344211082|ref|YP_004795402.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.18 gi|344211082|ref|YP_004795402.1| - 0.075 12.8 0.1 2.9 7.6 0.0 2.5 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family RNase_II_C_S1 PF18614.1 gi|344211082|ref|YP_004795402.1| - 0.16 12.0 1.0 0.74 9.8 0.0 2.6 3 0 0 3 3 3 0 RNase II-type exonuclease C-terminal S1 domain AAA_23 PF13476.6 gi|344211082|ref|YP_004795402.1| - 0.17 12.3 0.1 0.67 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|344211082|ref|YP_004795402.1| - 0.19 11.7 0.7 1 9.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) XPG_I PF00867.18 gi|344211083|ref|YP_004795403.1| - 1.4e-20 73.4 0.0 2.7e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|344211083|ref|YP_004795403.1| - 4.9e-12 46.2 0.0 8.2e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|344211083|ref|YP_004795403.1| - 1.6e-05 25.4 0.2 4.5e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|344211083|ref|YP_004795403.1| - 0.018 14.9 0.1 0.04 13.8 0.1 1.6 1 1 1 2 2 2 0 5'-3' exonuclease, N-terminal resolvase-like domain Acetyltransf_1 PF00583.25 gi|344211084|ref|YP_004795404.1| - 4.4e-05 23.7 0.1 7.4e-05 23.0 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family DUF3054 PF11255.8 gi|344211085|ref|YP_004795405.1| - 5.6e-20 71.9 9.0 6.8e-20 71.6 9.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) IncD PF17628.2 gi|344211085|ref|YP_004795405.1| - 9.3 6.0 10.3 0.86 9.4 4.7 1.8 1 1 1 2 2 2 0 Inclusion membrane protein D OCD_Mu_crystall PF02423.15 gi|344211088|ref|YP_004795408.1| - 5.5e-65 219.4 0.6 6.8e-65 219.1 0.6 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|344211088|ref|YP_004795408.1| - 0.00083 19.4 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|344211088|ref|YP_004795408.1| - 0.0094 16.5 0.3 0.022 15.4 0.3 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|344211088|ref|YP_004795408.1| - 0.066 13.4 0.1 0.13 12.4 0.0 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase SPP PF06550.11 gi|344211089|ref|YP_004795409.1| - 3.5e-88 295.8 29.4 1.7e-87 293.5 29.4 1.8 1 1 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Presenilin PF01080.17 gi|344211089|ref|YP_004795409.1| - 4.1e-06 25.8 11.5 0.018 13.9 0.0 2.6 2 1 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.13 gi|344211089|ref|YP_004795409.1| - 6.2e-06 25.9 7.3 0.00019 21.1 3.0 2.3 2 0 0 2 2 2 2 Signal peptide peptidase Gar1 PF04410.14 gi|344211090|ref|YP_004795410.1| - 8.9e-09 35.3 0.0 9.7e-09 35.2 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|344211091|ref|YP_004795411.1| - 1.2e-23 83.9 0.0 1.4e-23 83.6 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein ATP-grasp PF02222.22 gi|344211091|ref|YP_004795411.1| - 0.0083 15.7 0.1 0.012 15.1 0.1 1.3 1 1 0 1 1 1 1 ATP-grasp domain Phage_tail_APC PF16778.5 gi|344211091|ref|YP_004795411.1| - 0.051 13.4 0.4 0.57 10.1 0.1 2.3 2 0 0 2 2 2 0 Phage tail assembly chaperone protein CAP PF00188.26 gi|344211092|ref|YP_004795412.1| - 7.2e-05 23.6 0.0 0.00026 21.8 0.0 1.9 1 1 0 1 1 1 1 Cysteine-rich secretory protein family DUF4834 PF16118.5 gi|344211092|ref|YP_004795412.1| - 0.16 13.0 0.4 11 7.1 0.0 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4834) MSP1_C PF07462.11 gi|344211092|ref|YP_004795412.1| - 1.1 7.9 3.8 1.5 7.4 3.8 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus COX2 PF00116.20 gi|344211093|ref|YP_004795413.1| - 2.1e-15 56.6 0.0 5.1e-15 55.4 0.0 1.5 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|344211093|ref|YP_004795413.1| - 5.8e-12 45.6 0.5 8.8e-12 45.0 0.5 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|344211093|ref|YP_004795413.1| - 0.0098 16.0 0.0 0.024 14.8 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain PTPLA PF04387.14 gi|344211093|ref|YP_004795413.1| - 0.071 12.8 0.4 0.12 12.1 0.4 1.3 1 0 0 1 1 1 0 Protein tyrosine phosphatase-like protein, PTPLA Rft-1 PF04506.13 gi|344211093|ref|YP_004795413.1| - 0.096 11.4 0.4 0.12 11.0 0.4 1.1 1 0 0 1 1 1 0 Rft protein LSDAT_prok PF18171.1 gi|344211093|ref|YP_004795413.1| - 0.14 11.3 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 SLOG in TRPM, prokaryote TrbC PF04956.13 gi|344211093|ref|YP_004795413.1| - 0.5 10.6 3.7 0.72 10.1 0.9 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family UbiA PF01040.18 gi|344211094|ref|YP_004795414.1| - 5.6e-59 199.5 20.2 5.6e-59 199.5 20.2 3.0 2 1 1 3 3 3 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|344211094|ref|YP_004795414.1| - 4.1e-09 36.0 13.4 1.1e-05 24.7 1.5 3.9 4 1 1 5 5 5 2 Cytochrome oxidase assembly protein Rdx PF10262.9 gi|344211096|ref|YP_004795416.1| - 6.4e-17 61.5 0.0 6.9e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 Rdx family ABC_tran PF00005.27 gi|344211097|ref|YP_004795417.1| - 2.3e-30 105.9 0.0 3.5e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211097|ref|YP_004795417.1| - 8.5e-17 61.9 0.0 6.1e-10 39.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|344211097|ref|YP_004795417.1| - 5.4e-06 26.3 0.0 1.5e-05 24.8 0.0 1.7 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|344211097|ref|YP_004795417.1| - 0.00012 21.9 0.0 0.21 11.3 0.0 2.4 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_15 PF13175.6 gi|344211097|ref|YP_004795417.1| - 0.00023 21.0 0.0 0.22 11.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|344211097|ref|YP_004795417.1| - 0.00033 21.2 0.0 0.00047 20.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344211097|ref|YP_004795417.1| - 0.00042 20.6 0.0 0.00092 19.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344211097|ref|YP_004795417.1| - 0.0005 19.6 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.6 gi|344211097|ref|YP_004795417.1| - 0.001 19.3 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344211097|ref|YP_004795417.1| - 0.0013 18.6 0.0 0.0023 17.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|344211097|ref|YP_004795417.1| - 0.0015 18.9 0.6 0.0026 18.2 0.6 1.6 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|344211097|ref|YP_004795417.1| - 0.0016 18.4 0.1 0.0033 17.4 0.1 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|344211097|ref|YP_004795417.1| - 0.0034 17.1 0.4 0.007 16.1 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|344211097|ref|YP_004795417.1| - 0.0046 17.0 0.2 0.01 15.9 0.2 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.29 gi|344211097|ref|YP_004795417.1| - 0.0092 16.4 0.0 0.031 14.7 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|344211097|ref|YP_004795417.1| - 0.013 15.7 0.5 0.023 14.9 0.5 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|344211097|ref|YP_004795417.1| - 0.013 15.1 0.4 0.081 12.5 0.2 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain OB_MalK PF17912.1 gi|344211097|ref|YP_004795417.1| - 0.028 15.2 0.0 0.085 13.7 0.0 2.0 1 1 0 1 1 1 0 MalK OB fold domain AAA_5 PF07728.14 gi|344211097|ref|YP_004795417.1| - 0.03 14.3 0.0 0.23 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Lum_binding PF00677.17 gi|344211097|ref|YP_004795417.1| - 0.04 13.9 0.1 0.087 12.8 0.1 1.6 1 0 0 1 1 1 0 Lumazine binding domain NACHT PF05729.12 gi|344211097|ref|YP_004795417.1| - 0.062 13.2 0.2 0.2 11.6 0.1 1.9 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.21 gi|344211097|ref|YP_004795417.1| - 0.082 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|344211097|ref|YP_004795417.1| - 0.085 12.4 1.8 0.2 11.2 1.6 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|344211097|ref|YP_004795417.1| - 0.091 12.4 0.2 0.18 11.4 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|344211097|ref|YP_004795417.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344211097|ref|YP_004795417.1| - 0.11 13.0 0.1 1.1 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|344211097|ref|YP_004795417.1| - 0.12 12.6 0.0 1.3 9.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FeoB_N PF02421.18 gi|344211097|ref|YP_004795417.1| - 0.17 11.4 0.1 0.29 10.6 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_24 PF13479.6 gi|344211097|ref|YP_004795417.1| - 0.17 11.6 0.0 0.52 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|344211097|ref|YP_004795417.1| - 0.2 10.4 1.6 3.9 6.2 0.4 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ATP_bind_1 PF03029.17 gi|344211097|ref|YP_004795417.1| - 0.24 11.2 0.1 0.46 10.2 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_PrkA PF08298.11 gi|344211097|ref|YP_004795417.1| - 0.24 10.2 0.0 0.35 9.7 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain DUF815 PF05673.13 gi|344211097|ref|YP_004795417.1| - 0.25 10.5 0.0 0.54 9.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|344211097|ref|YP_004795417.1| - 0.3 11.0 0.0 0.46 10.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ABC2_membrane PF01061.24 gi|344211098|ref|YP_004795418.1| - 1.7e-22 79.9 12.1 2.4e-22 79.4 12.1 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|344211098|ref|YP_004795418.1| - 1.6e-11 44.0 10.2 4.3e-11 42.5 3.0 2.0 2 0 0 2 2 2 2 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|344211098|ref|YP_004795418.1| - 0.0019 17.4 0.8 0.0025 17.0 0.8 1.1 1 0 0 1 1 1 1 Membrane protein of 12 TMs CDP-OH_P_transf PF01066.21 gi|344211098|ref|YP_004795418.1| - 7.1 7.5 6.6 2.9 8.7 3.3 2.1 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase DSPc PF00782.20 gi|344211099|ref|YP_004795419.1| - 7.4e-09 35.5 0.0 8.6e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|344211099|ref|YP_004795419.1| - 0.00031 20.4 0.0 0.00035 20.2 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|344211099|ref|YP_004795419.1| - 0.0021 17.7 0.0 0.083 12.5 0.0 2.0 1 1 1 2 2 2 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|344211099|ref|YP_004795419.1| - 0.004 17.3 0.0 0.0061 16.7 0.0 1.3 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.6 gi|344211099|ref|YP_004795419.1| - 0.049 13.6 0.0 0.055 13.4 0.0 1.2 1 0 0 1 1 1 0 Tyrosine phosphatase family UPF0052 PF01933.18 gi|344211100|ref|YP_004795420.1| - 3.1e-43 148.1 0.0 3.8e-43 147.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|344211101|ref|YP_004795421.1| - 1.4e-09 37.5 0.2 8.2e-09 35.0 0.2 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|344211101|ref|YP_004795421.1| - 0.00073 19.1 0.0 0.0016 17.9 0.0 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|344211101|ref|YP_004795421.1| - 0.016 14.7 0.1 0.032 13.7 0.1 1.5 1 0 0 1 1 1 0 PcrB family DUF1633 PF07794.11 gi|344211101|ref|YP_004795421.1| - 0.063 11.5 2.0 0.071 11.3 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) IGPS PF00218.21 gi|344211101|ref|YP_004795421.1| - 0.18 11.0 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase CitG PF01874.16 gi|344211102|ref|YP_004795422.1| - 1.6e-70 238.0 1.8 1.8e-70 237.8 1.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase EthD PF07110.11 gi|344211102|ref|YP_004795422.1| - 0.011 16.9 3.7 14 6.9 0.2 3.4 2 1 1 3 3 3 0 EthD domain DUF447 PF04289.12 gi|344211103|ref|YP_004795423.1| - 1.6e-45 155.0 0.0 1.8e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.18 gi|344211104|ref|YP_004795424.1| - 2.5e-14 53.2 0.0 3e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 ParA PF10609.9 gi|344211105|ref|YP_004795425.1| - 5e-99 330.7 0.0 6.4e-99 330.4 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|344211105|ref|YP_004795425.1| - 1.1e-15 57.8 0.0 5.1e-15 55.7 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|344211105|ref|YP_004795425.1| - 9e-15 54.6 1.5 1.5e-14 53.9 0.5 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|344211105|ref|YP_004795425.1| - 2.8e-10 40.4 0.3 7.6e-09 35.7 0.3 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|344211105|ref|YP_004795425.1| - 4.6e-07 29.4 0.0 7.5e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|344211105|ref|YP_004795425.1| - 2.1e-05 24.1 0.0 0.0088 15.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|344211105|ref|YP_004795425.1| - 0.00021 20.7 0.0 0.00033 20.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|344211105|ref|YP_004795425.1| - 0.00052 19.3 3.3 0.00085 18.6 0.5 2.2 2 1 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|344211105|ref|YP_004795425.1| - 0.0054 16.6 0.0 4.8 7.0 0.1 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|344211105|ref|YP_004795425.1| - 0.02 14.4 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|344211105|ref|YP_004795425.1| - 0.054 13.4 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase FTHFS PF01268.19 gi|344211105|ref|YP_004795425.1| - 0.054 11.7 0.0 0.077 11.2 0.0 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase CLP1_P PF16575.5 gi|344211105|ref|YP_004795425.1| - 0.075 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CBP_BcsQ PF06564.12 gi|344211105|ref|YP_004795425.1| - 0.11 11.9 1.0 0.3 10.5 0.2 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_18 PF13238.6 gi|344211105|ref|YP_004795425.1| - 0.12 12.9 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1610 PF07754.11 gi|344211105|ref|YP_004795425.1| - 0.13 12.2 0.2 0.32 11.0 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Ribosomal_S13 PF00416.22 gi|344211107|ref|YP_004795427.1| - 1.7e-49 167.5 6.3 2.1e-49 167.1 6.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|344211107|ref|YP_004795427.1| - 0.015 14.1 0.0 0.015 14.1 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|344211108|ref|YP_004795428.1| - 4.5e-13 48.7 0.5 2.3e-12 46.4 0.0 2.1 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|344211108|ref|YP_004795428.1| - 0.0017 19.2 0.7 0.008 17.1 0.2 2.2 2 1 1 3 3 3 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|344211109|ref|YP_004795429.1| - 5.6e-50 168.4 1.9 6.8e-50 168.1 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|344211109|ref|YP_004795429.1| - 0.002 18.5 0.1 0.0031 17.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|344211110|ref|YP_004795430.1| - 2.8e-19 69.5 0.0 1.2e-18 67.5 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|344211110|ref|YP_004795430.1| - 3.1e-14 52.1 0.0 4.1e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Thioredoxin_14 PF18402.1 gi|344211110|ref|YP_004795430.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain Ribosomal_L18 PF17135.4 gi|344211111|ref|YP_004795431.1| - 9.6e-06 25.1 0.0 9.8e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|344211111|ref|YP_004795431.1| - 3.9e-05 24.3 0.2 0.00015 22.5 0.2 1.8 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|344211112|ref|YP_004795432.1| - 6e-09 36.2 0.8 1.3e-06 28.7 0.8 2.5 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|344211113|ref|YP_004795433.1| - 4.5e-31 107.9 0.0 5e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|344211114|ref|YP_004795434.1| - 1.2e-26 92.8 0.2 1.3e-26 92.6 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|344211115|ref|YP_004795435.1| - 6.9e-11 41.9 0.0 7.5e-11 41.8 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|344211116|ref|YP_004795436.1| - 1e-73 248.2 1.7 1.4e-73 247.7 1.7 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|344211116|ref|YP_004795436.1| - 2e-33 115.4 0.2 8.2e-33 113.4 0.2 2.1 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|344211116|ref|YP_004795436.1| - 1.5e-09 37.8 0.5 2.7e-09 36.9 0.0 1.6 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|344211116|ref|YP_004795436.1| - 0.00011 21.5 0.3 0.00018 20.8 0.3 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus IDEAL PF08858.10 gi|344211116|ref|YP_004795436.1| - 0.14 11.9 0.7 1.3 8.9 0.2 2.3 2 0 0 2 2 2 0 IDEAL domain Ribosomal_S2 PF00318.20 gi|344211117|ref|YP_004795437.1| - 2.4e-23 82.5 0.2 8.5e-14 51.3 0.7 2.1 2 0 0 2 2 2 2 Ribosomal protein S2 SDA1 PF05285.12 gi|344211117|ref|YP_004795437.1| - 6 6.2 9.9 7.5 5.9 9.9 1.1 1 0 0 1 1 1 0 SDA1 DUF5518 PF17647.1 gi|344211118|ref|YP_004795438.1| - 1.5e-15 57.4 30.8 1.7e-15 57.2 30.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF21 PF01595.20 gi|344211118|ref|YP_004795438.1| - 0.0039 16.9 2.5 0.005 16.6 2.5 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain DUF5518 PF17647.1 gi|344211119|ref|YP_004795439.1| - 5.1e-11 42.8 25.7 5.8e-11 42.6 25.7 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) p450 PF00067.22 gi|344211120|ref|YP_004795440.1| - 3.6e-98 329.3 0.0 4.3e-98 329.1 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 PAS_9 PF13426.7 gi|344211121|ref|YP_004795441.1| - 9.4e-41 138.3 0.5 4.1e-22 78.4 0.0 3.8 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.10 gi|344211121|ref|YP_004795441.1| - 5.2e-38 129.7 9.7 4.4e-14 52.7 0.1 3.8 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|344211121|ref|YP_004795441.1| - 7.1e-27 93.7 0.5 1.2e-10 41.3 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.7 gi|344211121|ref|YP_004795441.1| - 1.1e-18 66.8 2.7 1.3e-07 31.4 0.1 4.4 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.26 gi|344211121|ref|YP_004795441.1| - 1.4e-16 61.0 0.0 3.4e-16 59.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|344211121|ref|YP_004795441.1| - 1.8e-16 60.3 0.0 4.1e-16 59.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|344211121|ref|YP_004795441.1| - 1.3e-14 54.0 1.0 1.3e-14 54.0 1.0 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|344211121|ref|YP_004795441.1| - 1.2e-13 51.2 0.1 1e-10 41.8 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.7 gi|344211121|ref|YP_004795441.1| - 4.4e-06 26.8 3.9 0.025 14.7 0.1 4.8 3 3 0 3 3 3 1 PAS fold PAS_10 PF13596.6 gi|344211121|ref|YP_004795441.1| - 0.0097 16.5 0.1 8.6 7.0 0.0 2.9 3 0 0 3 3 2 1 PAS domain HATPase_c_2 PF13581.6 gi|344211121|ref|YP_004795441.1| - 0.035 14.1 2.3 0.12 12.3 0.1 3.0 4 0 0 4 4 4 0 Histidine kinase-like ATPase domain Lambda_tail_I PF06805.12 gi|344211121|ref|YP_004795441.1| - 0.09 13.1 0.0 0.66 10.3 0.0 2.5 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I PAS_12 PF18095.1 gi|344211121|ref|YP_004795441.1| - 0.12 12.0 0.0 0.38 10.4 0.0 1.8 2 0 0 2 2 2 0 UPF0242 C-terminal PAS-like domain PilJ PF13675.6 gi|344211121|ref|YP_004795441.1| - 0.35 10.9 2.4 1.6 8.8 0.1 3.0 3 0 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term DivIC PF04977.15 gi|344211121|ref|YP_004795441.1| - 8.3 6.3 8.0 8.5 6.2 1.2 2.8 3 0 0 3 3 3 0 Septum formation initiator GHMP_kinases_N PF00288.26 gi|344211122|ref|YP_004795442.1| - 1.4e-14 54.1 0.8 1.4e-14 54.1 0.8 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|344211122|ref|YP_004795442.1| - 1.3e-13 51.1 0.2 1.3e-13 51.1 0.2 2.6 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|344211122|ref|YP_004795442.1| - 3.6e-05 23.2 0.1 0.00021 20.8 0.1 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|344211123|ref|YP_004795443.1| - 4.7e-40 137.7 6.0 5.7e-40 137.4 6.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3561 PF12084.8 gi|344211123|ref|YP_004795443.1| - 0.23 11.5 0.0 0.4 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Lactamase_B_2 PF12706.7 gi|344211125|ref|YP_004795445.1| - 1.5e-09 37.7 0.6 7.8e-08 32.1 0.1 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|344211125|ref|YP_004795445.1| - 3.4e-07 30.5 2.9 1e-06 28.9 2.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|344211125|ref|YP_004795445.1| - 9.8e-05 22.2 0.4 0.0043 17.0 0.1 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|344211126|ref|YP_004795446.1| - 6.9e-64 215.4 0.3 8.6e-64 215.0 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase ArsA_ATPase PF02374.15 gi|344211127|ref|YP_004795447.1| - 5.7e-83 278.6 0.0 6.5e-83 278.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|344211127|ref|YP_004795447.1| - 3.3e-09 36.9 0.0 1.2e-08 35.1 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|344211127|ref|YP_004795447.1| - 4.7e-07 29.5 0.8 0.0019 17.7 0.2 2.3 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|344211127|ref|YP_004795447.1| - 5.1e-07 29.8 0.0 1.6e-06 28.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|344211127|ref|YP_004795447.1| - 0.00076 19.0 0.1 0.0014 18.1 0.1 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|344211127|ref|YP_004795447.1| - 0.0025 17.3 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|344211127|ref|YP_004795447.1| - 0.042 13.5 0.4 0.12 12.0 0.3 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|344211127|ref|YP_004795447.1| - 0.094 12.4 0.2 0.17 11.6 0.2 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|344211127|ref|YP_004795447.1| - 2.4 7.7 7.7 2.5 7.6 3.5 2.7 1 1 0 2 2 2 0 AAA domain tRNA-synt_1c PF00749.21 gi|344211128|ref|YP_004795448.1| - 3.5e-59 200.3 0.0 4.2e-59 200.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|344211128|ref|YP_004795448.1| - 4.7e-14 52.6 0.0 1.9e-13 50.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain EGF PF00008.27 gi|344211128|ref|YP_004795448.1| - 0.16 12.3 0.2 0.38 11.1 0.2 1.6 1 0 0 1 1 1 0 EGF-like domain PAS PF00989.25 gi|344211129|ref|YP_004795449.1| - 2.1e-33 114.7 0.2 1.2e-16 60.7 0.0 4.6 3 2 0 3 3 3 3 PAS fold PAS_4 PF08448.10 gi|344211129|ref|YP_004795449.1| - 5.2e-32 110.4 9.8 8.4e-15 55.0 0.2 4.9 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|344211129|ref|YP_004795449.1| - 6.2e-28 97.1 0.0 7.1e-11 42.3 0.0 4.1 3 1 0 3 3 3 3 PAS domain HisKA_7TM PF16927.5 gi|344211129|ref|YP_004795449.1| - 8.5e-26 91.4 17.6 1.1e-25 91.0 17.6 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_8 PF13188.7 gi|344211129|ref|YP_004795449.1| - 3.3e-23 81.2 0.2 1.2e-08 34.8 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|344211129|ref|YP_004795449.1| - 5.5e-16 59.1 0.0 1.3e-15 57.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|344211129|ref|YP_004795449.1| - 1e-10 41.8 0.1 0.0033 17.6 0.0 5.0 4 2 0 4 4 4 3 PAS fold HisKA PF00512.25 gi|344211129|ref|YP_004795449.1| - 1.3e-09 38.0 1.4 3.8e-09 36.5 1.4 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|344211129|ref|YP_004795449.1| - 7.8e-05 22.9 0.0 0.00031 21.0 0.0 2.1 3 0 0 3 3 2 1 PAS fold PAS_10 PF13596.6 gi|344211129|ref|YP_004795449.1| - 0.00089 19.8 0.0 0.012 16.2 0.0 2.7 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|344211129|ref|YP_004795449.1| - 0.001 19.0 0.1 0.0027 17.6 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HSP20 PF00011.21 gi|344211130|ref|YP_004795450.1| - 2e-16 60.0 0.0 2.8e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|344211130|ref|YP_004795450.1| - 1.2e-10 40.8 0.0 1.9e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CDC48_N PF02359.18 gi|344211131|ref|YP_004795451.1| - 0.0048 17.1 0.0 0.0048 17.1 0.0 1.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Abhydrolase_3 PF07859.13 gi|344211133|ref|YP_004795453.1| - 3.7e-18 66.1 1.3 6.3e-18 65.4 1.3 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|344211133|ref|YP_004795453.1| - 4.4e-13 49.2 0.0 1.8e-12 47.2 0.0 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.28 gi|344211133|ref|YP_004795453.1| - 6.4e-10 38.5 0.0 1.8e-09 37.0 0.0 1.6 1 1 0 1 1 1 1 Carboxylesterase family Hydrolase_4 PF12146.8 gi|344211133|ref|YP_004795453.1| - 6e-05 22.4 0.1 0.0074 15.6 0.0 2.4 3 0 0 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|344211133|ref|YP_004795453.1| - 0.0035 17.4 0.1 0.006 16.7 0.1 1.3 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.13 gi|344211133|ref|YP_004795453.1| - 0.0097 15.6 0.0 0.015 15.0 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.20 gi|344211133|ref|YP_004795453.1| - 0.054 13.1 0.0 0.84 9.2 0.0 2.1 2 0 0 2 2 2 0 alpha/beta hydrolase fold Fer4_7 PF12838.7 gi|344211134|ref|YP_004795454.1| - 6.7e-13 49.0 21.7 1.8e-07 31.6 7.7 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344211134|ref|YP_004795454.1| - 3e-12 45.8 14.5 1.2e-07 31.3 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|344211134|ref|YP_004795454.1| - 2.2e-08 34.2 5.1 4.2e-08 33.2 5.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344211134|ref|YP_004795454.1| - 2.5e-07 30.7 18.5 1.1e-05 25.5 7.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|344211134|ref|YP_004795454.1| - 9.1e-07 28.7 14.2 2.4e-05 24.2 4.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|344211134|ref|YP_004795454.1| - 1.4e-06 28.3 11.1 5.4e-06 26.4 11.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344211134|ref|YP_004795454.1| - 2.3e-06 28.5 4.6 0.00029 21.7 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|344211134|ref|YP_004795454.1| - 1e-05 25.9 1.5 0.03 14.9 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344211134|ref|YP_004795454.1| - 4.3e-05 23.4 10.0 0.0023 17.9 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|344211134|ref|YP_004795454.1| - 0.00011 22.5 6.2 0.002 18.6 6.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|344211134|ref|YP_004795454.1| - 0.001 19.6 15.3 0.0065 17.0 15.3 2.3 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|344211134|ref|YP_004795454.1| - 0.0013 19.1 2.5 0.0013 19.1 2.5 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain ETF_QO PF05187.13 gi|344211134|ref|YP_004795454.1| - 0.0021 18.2 0.3 0.0021 18.1 0.3 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|344211134|ref|YP_004795454.1| - 0.0023 18.1 3.2 0.0023 18.1 3.2 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|344211134|ref|YP_004795454.1| - 0.0024 18.7 4.1 0.0024 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain ETF PF01012.21 gi|344211135|ref|YP_004795455.1| - 1.5e-40 139.0 0.0 1.9e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|344211136|ref|YP_004795456.1| - 9.1e-25 86.5 0.3 2.6e-24 85.1 0.1 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|344211136|ref|YP_004795456.1| - 4.2e-16 59.4 0.0 1.2e-15 57.9 0.0 1.9 1 1 0 1 1 1 1 Electron transfer flavoprotein domain PI3K_1B_p101 PF10486.9 gi|344211136|ref|YP_004795456.1| - 2.4 5.8 3.3 3.1 5.5 3.3 1.1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit FAD_binding_3 PF01494.19 gi|344211137|ref|YP_004795457.1| - 3e-12 46.5 1.5 7.8e-12 45.1 1.5 1.6 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|344211137|ref|YP_004795457.1| - 5.4e-08 32.6 0.5 7.9e-08 32.1 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|344211137|ref|YP_004795457.1| - 4.7e-07 29.3 4.8 0.00045 19.6 1.1 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|344211137|ref|YP_004795457.1| - 9.8e-07 28.7 7.5 0.00089 18.9 2.3 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344211137|ref|YP_004795457.1| - 2e-05 23.9 0.5 3.8e-05 23.1 0.5 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|344211137|ref|YP_004795457.1| - 3.7e-05 23.9 0.5 0.00012 22.2 0.5 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ETF_QO PF05187.13 gi|344211137|ref|YP_004795457.1| - 0.0013 18.9 0.2 0.0022 18.1 0.2 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S HI0933_like PF03486.14 gi|344211137|ref|YP_004795457.1| - 0.003 16.3 3.0 0.0066 15.2 1.3 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|344211137|ref|YP_004795457.1| - 0.0039 16.3 10.4 0.013 14.6 4.4 2.3 1 1 0 2 2 2 2 FAD binding domain GIDA PF01134.22 gi|344211137|ref|YP_004795457.1| - 0.014 14.5 4.1 0.13 11.3 3.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|344211137|ref|YP_004795457.1| - 0.021 14.1 0.7 0.038 13.2 0.7 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|344211137|ref|YP_004795457.1| - 0.071 11.9 1.5 0.88 8.3 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|344211137|ref|YP_004795457.1| - 0.14 11.5 0.8 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 ThiF family Fer4_2 PF12797.7 gi|344211137|ref|YP_004795457.1| - 2.9 8.2 5.1 0.38 11.0 0.4 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Acetyltransf_1 PF00583.25 gi|344211139|ref|YP_004795459.1| - 1e-13 51.5 0.1 2.9e-13 50.1 0.0 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|344211139|ref|YP_004795459.1| - 4e-10 40.0 0.0 5.8e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211139|ref|YP_004795459.1| - 2.9e-07 30.8 0.0 5.5e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344211139|ref|YP_004795459.1| - 3e-05 24.0 0.0 7e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344211139|ref|YP_004795459.1| - 0.00026 21.7 0.0 0.00047 20.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain UBA_4 PF14555.6 gi|344211139|ref|YP_004795459.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain ETC_C1_NDUFA4 PF04800.12 gi|344211139|ref|YP_004795459.1| - 0.16 12.2 0.1 0.38 11.0 0.1 1.6 1 0 0 1 1 1 0 ETC complex I subunit conserved region Bac_luciferase PF00296.20 gi|344211140|ref|YP_004795460.1| - 9.8e-66 222.3 9.7 1.3e-65 221.9 9.7 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase AMP-binding PF00501.28 gi|344211141|ref|YP_004795461.1| - 2.2e-97 326.3 0.2 2.8e-97 326.0 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344211141|ref|YP_004795461.1| - 1.9e-16 60.8 0.0 5.6e-16 59.3 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF456 PF04306.13 gi|344211143|ref|YP_004795463.1| - 8.1e-25 87.7 25.7 8.1e-25 87.7 25.7 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF456) DUF5056 PF16479.5 gi|344211143|ref|YP_004795463.1| - 0.038 14.2 0.9 0.1 12.9 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5056) Helicase_RecD PF05127.14 gi|344211144|ref|YP_004795464.1| - 2.4e-47 161.1 0.0 4.2e-47 160.3 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|344211144|ref|YP_004795464.1| - 1.3e-41 142.5 0.1 3.2e-25 88.9 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|344211144|ref|YP_004795464.1| - 5.4e-27 93.6 0.0 1.8e-26 91.9 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|344211144|ref|YP_004795464.1| - 1.7e-06 27.9 0.5 5.7e-06 26.2 0.0 2.2 3 0 0 3 3 3 1 AAA domain Acetyltransf_10 PF13673.7 gi|344211144|ref|YP_004795464.1| - 0.0049 16.8 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211144|ref|YP_004795464.1| - 0.015 15.7 0.0 0.12 12.8 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain NMO PF03060.15 gi|344211145|ref|YP_004795465.1| - 4.2e-60 203.9 8.3 9.3e-46 156.7 1.2 2.0 1 1 1 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|344211145|ref|YP_004795465.1| - 1.3e-07 30.9 9.1 1.1e-06 27.9 9.1 2.1 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|344211145|ref|YP_004795465.1| - 1.9e-05 23.9 8.3 3.9e-05 22.8 8.3 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|344211145|ref|YP_004795465.1| - 0.03 13.7 0.3 0.051 12.9 0.3 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|344211145|ref|YP_004795465.1| - 0.21 10.7 0.0 0.35 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Ribosomal_L7Ae PF01248.26 gi|344211146|ref|YP_004795466.1| - 2.2e-25 88.2 0.0 2.6e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|344211146|ref|YP_004795466.1| - 0.00014 21.7 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.12 gi|344211146|ref|YP_004795466.1| - 0.0066 16.7 2.5 1.6 9.1 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1269) eRF1_3 PF03465.15 gi|344211146|ref|YP_004795466.1| - 0.054 14.0 0.2 0.07 13.6 0.2 1.2 1 0 0 1 1 1 0 eRF1 domain 3 Ribosomal_S28e PF01200.18 gi|344211147|ref|YP_004795467.1| - 3.2e-29 100.7 2.2 3.5e-29 100.6 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|344211148|ref|YP_004795468.1| - 2e-22 79.2 0.0 2.6e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|344211148|ref|YP_004795468.1| - 1.2e-05 25.1 1.4 1.6e-05 24.7 1.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|344211148|ref|YP_004795468.1| - 0.014 15.5 0.6 0.025 14.7 0.6 1.3 1 0 0 1 1 1 0 YHS domain NOA36 PF06524.12 gi|344211148|ref|YP_004795468.1| - 0.21 10.9 16.9 0.24 10.7 16.9 1.1 1 0 0 1 1 1 0 NOA36 protein NDK PF00334.19 gi|344211149|ref|YP_004795469.1| - 9.4e-57 190.8 0.0 1.1e-56 190.6 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GST_N_3 PF13417.6 gi|344211150|ref|YP_004795470.1| - 5.2e-15 55.6 0.0 6.2e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|344211150|ref|YP_004795470.1| - 4.3e-14 52.5 0.0 5.3e-14 52.2 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|344211150|ref|YP_004795470.1| - 3.2e-10 40.1 0.0 3.7e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|344211150|ref|YP_004795470.1| - 0.00011 22.5 0.0 0.00013 22.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|344211150|ref|YP_004795470.1| - 0.0041 17.5 0.1 0.005 17.2 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Rop PF01815.16 gi|344211150|ref|YP_004795470.1| - 0.054 13.4 0.1 0.088 12.7 0.1 1.4 1 0 0 1 1 1 0 Rop protein Thioredoxin_2 PF13098.6 gi|344211150|ref|YP_004795470.1| - 0.067 13.6 0.0 0.091 13.2 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin-like domain NTP_transf_3 PF12804.7 gi|344211150|ref|YP_004795470.1| - 0.084 13.2 0.0 0.094 13.1 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain UBZ_FAAP20 PF15750.5 gi|344211150|ref|YP_004795470.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin-binding zinc-finger SelR PF01641.18 gi|344211152|ref|YP_004795472.1| - 2.2e-51 173.0 0.0 2.5e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|344211152|ref|YP_004795472.1| - 0.00028 21.1 0.0 0.00054 20.1 0.0 1.4 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly TF_Zn_Ribbon PF08271.12 gi|344211152|ref|YP_004795472.1| - 0.0099 15.4 6.2 0.75 9.4 0.1 2.9 3 0 0 3 3 3 2 TFIIB zinc-binding RIG-I_C-RD PF11648.8 gi|344211152|ref|YP_004795472.1| - 0.084 13.1 0.1 0.35 11.1 0.2 1.8 1 1 1 2 2 2 0 C-terminal domain of RIG-I zinc_ribbon_10 PF10058.9 gi|344211152|ref|YP_004795472.1| - 0.088 12.6 0.2 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein HECT_2 PF09814.9 gi|344211152|ref|YP_004795472.1| - 0.1 11.4 0.2 8.2 5.2 0.0 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding ADD_ATRX PF17981.1 gi|344211152|ref|YP_004795472.1| - 0.1 12.5 0.1 14 5.6 0.0 2.2 2 0 0 2 2 2 0 Cysteine Rich ADD domain Acetyltransf_1 PF00583.25 gi|344211153|ref|YP_004795473.1| - 4.1e-17 62.5 0.1 4.9e-17 62.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344211153|ref|YP_004795473.1| - 1.8e-11 44.1 0.1 2.3e-11 43.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211153|ref|YP_004795473.1| - 3.5e-11 43.4 0.0 4.4e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344211153|ref|YP_004795473.1| - 3.2e-07 30.5 0.1 4.6e-07 30.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211153|ref|YP_004795473.1| - 3.5e-05 23.7 0.0 6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|344211153|ref|YP_004795473.1| - 0.00024 20.8 0.7 0.0054 16.5 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|344211153|ref|YP_004795473.1| - 0.00025 21.2 0.0 0.00033 20.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344211153|ref|YP_004795473.1| - 0.00059 19.9 0.0 0.0011 19.0 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_13 PF13880.6 gi|344211153|ref|YP_004795473.1| - 0.0017 18.3 0.0 0.0054 16.7 0.0 1.8 2 0 0 2 2 2 1 ESCO1/2 acetyl-transferase CBS PF00571.28 gi|344211154|ref|YP_004795474.1| - 1.1e-15 57.8 1.0 7.2e-07 29.6 0.0 2.2 2 0 0 2 2 2 2 CBS domain GCH_III PF05165.12 gi|344211155|ref|YP_004795475.1| - 1.3e-89 299.7 1.0 1.7e-89 299.4 1.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|344211155|ref|YP_004795475.1| - 4.9e-07 30.0 0.0 0.0012 19.1 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|344211155|ref|YP_004795475.1| - 0.003 17.9 0.0 0.047 14.0 0.0 2.1 2 0 0 2 2 2 1 minimal CRISPR polymerase domain CheD PF03975.13 gi|344211155|ref|YP_004795475.1| - 0.12 12.4 0.0 0.57 10.3 0.0 1.9 2 0 0 2 2 2 0 CheD chemotactic sensory transduction MarR_2 PF12802.7 gi|344211156|ref|YP_004795476.1| - 0.034 14.0 0.4 0.11 12.4 0.4 1.7 2 0 0 2 2 2 0 MarR family HTH_15 PF12324.8 gi|344211156|ref|YP_004795476.1| - 0.095 12.7 1.4 0.17 11.8 0.9 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase CARDB PF07705.11 gi|344211158|ref|YP_004795478.1| - 0.00068 19.8 14.4 0.024 14.9 0.4 3.0 3 0 0 3 3 3 2 CARDB fn3_6 PF17766.1 gi|344211158|ref|YP_004795478.1| - 0.047 13.9 14.3 2.2 8.5 0.5 4.5 2 2 1 3 3 3 0 Fibronectin type-III domain PapC_N PF13954.6 gi|344211158|ref|YP_004795478.1| - 0.076 13.0 0.4 5.9 6.9 0.1 3.2 3 2 0 3 3 3 0 PapC N-terminal domain DUF2064 PF09837.9 gi|344211159|ref|YP_004795479.1| - 0.00062 19.6 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) HemY_N PF07219.13 gi|344211160|ref|YP_004795480.1| - 0.056 13.7 4.5 0.1 12.8 0.5 2.4 1 1 0 2 2 2 0 HemY protein N-terminus UDG PF03167.19 gi|344211161|ref|YP_004795481.1| - 1.6e-20 73.6 0.0 2e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NqrM PF04400.13 gi|344211161|ref|YP_004795481.1| - 0.014 15.2 0.5 0.031 14.0 0.5 1.5 1 0 0 1 1 1 0 (Na+)-NQR maturation NqrM Chorismate_synt PF01264.21 gi|344211162|ref|YP_004795482.1| - 1.8e-117 391.7 0.0 2.1e-117 391.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.20 gi|344211163|ref|YP_004795483.1| - 5.2e-107 358.1 0.1 6.3e-107 357.8 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.11 gi|344211163|ref|YP_004795483.1| - 0.019 15.5 0.0 0.23 11.9 0.0 2.4 2 0 0 2 2 2 0 Copper amine oxidase N-terminal domain adh_short PF00106.25 gi|344211164|ref|YP_004795484.1| - 3.9e-35 121.1 0.3 4.9e-35 120.8 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344211164|ref|YP_004795484.1| - 2e-32 112.6 1.4 2.9e-32 112.1 1.4 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344211164|ref|YP_004795484.1| - 8.7e-12 45.3 0.3 1.1e-11 45.0 0.3 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344211164|ref|YP_004795484.1| - 0.0011 18.4 0.0 0.096 12.1 0.3 2.1 2 0 0 2 2 2 2 NAD dependent epimerase/dehydratase family Fox-1_C PF12414.8 gi|344211164|ref|YP_004795484.1| - 0.0048 17.2 1.8 0.0048 17.2 1.8 2.1 1 1 1 2 2 2 1 Calcitonin gene-related peptide regulator C terminal 3HCDH_N PF02737.18 gi|344211164|ref|YP_004795484.1| - 0.023 14.6 0.7 0.035 14.0 0.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|344211164|ref|YP_004795484.1| - 0.074 12.4 0.3 0.12 11.7 0.3 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Zip PF02535.22 gi|344211165|ref|YP_004795485.1| - 1.5e-08 34.3 15.6 6.6e-08 32.1 10.1 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter PAS PF00989.25 gi|344211166|ref|YP_004795486.1| - 3.1e-17 62.6 0.1 6.9e-17 61.5 0.1 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|344211166|ref|YP_004795486.1| - 5.4e-17 62.0 0.1 1.6e-16 60.4 0.1 1.9 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|344211166|ref|YP_004795486.1| - 8.9e-12 45.2 0.1 3.5e-11 43.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|344211166|ref|YP_004795486.1| - 4.2e-11 43.4 0.0 1.1e-10 42.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|344211166|ref|YP_004795486.1| - 1.2e-09 38.4 0.0 3.3e-09 36.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344211166|ref|YP_004795486.1| - 8.7e-08 32.0 0.0 3.4e-07 30.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|344211166|ref|YP_004795486.1| - 1.5e-07 31.4 0.4 6.5e-07 29.3 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|344211166|ref|YP_004795486.1| - 0.00036 20.4 0.0 0.00069 19.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SelA PF03841.13 gi|344211166|ref|YP_004795486.1| - 0.015 14.3 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase Snf7 PF03357.21 gi|344211166|ref|YP_004795486.1| - 0.061 12.9 1.1 0.52 9.9 0.5 2.1 2 0 0 2 2 2 0 Snf7 ATPase PF06745.13 gi|344211167|ref|YP_004795487.1| - 1.2e-57 194.9 0.0 2.2e-29 102.4 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|344211167|ref|YP_004795487.1| - 8.3e-18 64.7 1.1 6.9e-10 38.8 0.5 2.9 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|344211167|ref|YP_004795487.1| - 1e-11 45.5 0.7 3.7e-06 27.4 0.2 2.7 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|344211167|ref|YP_004795487.1| - 1.4e-11 44.8 0.0 1.9e-05 25.0 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|344211167|ref|YP_004795487.1| - 4.4e-08 33.1 0.0 0.0018 18.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain GvpD PF07088.11 gi|344211167|ref|YP_004795487.1| - 1.7e-07 30.2 0.2 1.8e-06 26.9 0.2 2.5 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|344211167|ref|YP_004795487.1| - 2.9e-07 30.2 0.1 0.0011 18.5 0.0 2.4 2 1 0 2 2 2 2 recA bacterial DNA recombination protein NACHT PF05729.12 gi|344211167|ref|YP_004795487.1| - 3.6e-07 30.3 0.0 5.3e-05 23.2 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|344211167|ref|YP_004795487.1| - 6.1e-07 29.9 1.3 0.031 14.7 0.3 3.0 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|344211167|ref|YP_004795487.1| - 1.9e-06 27.8 0.0 0.0049 16.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_30 PF13604.6 gi|344211167|ref|YP_004795487.1| - 3.7e-06 26.8 1.1 0.01 15.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|344211167|ref|YP_004795487.1| - 8.5e-06 25.3 0.0 0.035 13.4 0.1 3.2 2 1 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_5 PF07728.14 gi|344211167|ref|YP_004795487.1| - 1.6e-05 24.9 0.0 0.33 11.0 0.0 3.1 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MEDS PF14417.6 gi|344211167|ref|YP_004795487.1| - 0.00021 21.2 0.2 0.058 13.2 0.0 2.5 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_7 PF12775.7 gi|344211167|ref|YP_004795487.1| - 0.00026 20.6 0.0 0.31 10.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_18 PF13238.6 gi|344211167|ref|YP_004795487.1| - 0.00049 20.6 1.2 0.54 10.8 0.2 3.3 3 1 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|344211167|ref|YP_004795487.1| - 0.0006 19.8 0.0 1.6 8.8 0.0 3.1 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|344211167|ref|YP_004795487.1| - 0.00063 19.9 3.1 0.67 10.1 0.4 3.2 2 2 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|344211167|ref|YP_004795487.1| - 0.00066 20.2 0.6 0.14 12.7 0.1 2.9 3 0 0 3 3 2 1 ABC transporter AAA_19 PF13245.6 gi|344211167|ref|YP_004795487.1| - 0.00068 20.0 0.0 0.25 11.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|344211167|ref|YP_004795487.1| - 0.0012 19.3 0.0 0.47 10.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase Rad51 PF08423.11 gi|344211167|ref|YP_004795487.1| - 0.0021 17.4 0.2 0.0077 15.5 0.0 2.0 3 0 0 3 3 2 1 Rad51 CbiA PF01656.23 gi|344211167|ref|YP_004795487.1| - 0.0022 18.0 0.1 0.017 15.2 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_11 PF13086.6 gi|344211167|ref|YP_004795487.1| - 0.0028 17.5 0.0 2.3 7.9 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|344211167|ref|YP_004795487.1| - 0.0034 17.6 0.4 2.8 8.2 0.0 2.8 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|344211167|ref|YP_004795487.1| - 0.0046 16.3 0.1 0.12 11.5 0.0 2.5 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|344211167|ref|YP_004795487.1| - 0.011 15.7 0.0 0.56 10.1 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|344211167|ref|YP_004795487.1| - 0.012 15.6 0.2 0.052 13.5 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|344211167|ref|YP_004795487.1| - 0.019 14.7 4.3 0.26 11.0 1.6 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain DAP3 PF10236.9 gi|344211167|ref|YP_004795487.1| - 0.035 13.3 0.0 4.7 6.3 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Sigma54_activat PF00158.26 gi|344211167|ref|YP_004795487.1| - 0.052 13.2 0.3 21 4.8 0.2 3.1 2 1 0 2 2 2 0 Sigma-54 interaction domain PhoH PF02562.16 gi|344211167|ref|YP_004795487.1| - 0.12 11.8 1.4 1.9 7.9 0.1 2.3 2 0 0 2 2 2 0 PhoH-like protein Mg_chelatase PF01078.21 gi|344211167|ref|YP_004795487.1| - 0.13 11.6 0.5 2.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|344211167|ref|YP_004795487.1| - 0.14 11.2 1.9 1.6 7.7 0.0 2.7 2 1 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|344211167|ref|YP_004795487.1| - 0.17 11.8 0.2 3.2 7.6 0.0 2.5 2 0 0 2 2 2 0 Rad17 P-loop domain TrwB_AAD_bind PF10412.9 gi|344211167|ref|YP_004795487.1| - 0.18 10.7 0.1 6.1 5.6 0.0 2.4 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain Roc PF08477.13 gi|344211167|ref|YP_004795487.1| - 0.23 11.7 0.0 52 4.1 0.0 2.8 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase Saccharop_dh_N PF04455.12 gi|344211168|ref|YP_004795488.1| - 4.8e-37 126.4 0.0 1.1e-36 125.2 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|344211168|ref|YP_004795488.1| - 6.3e-05 22.7 0.2 0.02 14.7 0.1 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|344211168|ref|YP_004795488.1| - 0.0091 15.3 0.0 0.029 13.6 0.0 1.7 1 1 0 1 1 1 1 Deoxyhypusine synthase TPP_enzyme_N PF02776.18 gi|344211170|ref|YP_004795490.1| - 7.4e-41 139.6 1.1 2.6e-37 128.1 0.1 2.6 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|344211170|ref|YP_004795490.1| - 6.9e-38 129.8 0.1 1.2e-37 129.0 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|344211170|ref|YP_004795490.1| - 1.7e-34 118.5 0.3 4.5e-34 117.1 0.2 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain SRAP PF02586.14 gi|344211171|ref|YP_004795491.1| - 3.9e-65 219.4 0.0 4.5e-65 219.3 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) HTH_Tnp_Tc3_2 PF01498.18 gi|344211172|ref|YP_004795492.1| - 0.12 12.6 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 Transposase PALP PF00291.25 gi|344211173|ref|YP_004795493.1| - 6.8e-60 203.0 1.6 7.7e-60 202.8 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|344211173|ref|YP_004795493.1| - 0.0079 16.2 0.2 0.034 14.1 0.2 2.0 1 1 0 1 1 1 1 Zinc-binding dehydrogenase eIF-5_eIF-2B PF01873.17 gi|344211174|ref|YP_004795494.1| - 1.1e-29 102.6 0.0 1.6e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|344211174|ref|YP_004795494.1| - 1.3e-07 31.5 1.2 1.9e-07 30.9 1.2 1.3 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|344211174|ref|YP_004795494.1| - 0.022 15.1 0.5 0.063 13.7 0.5 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|344211174|ref|YP_004795494.1| - 0.077 12.7 1.6 0.23 11.1 1.6 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.12 gi|344211174|ref|YP_004795494.1| - 0.23 11.0 1.4 0.47 10.0 1.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_20 PF12840.7 gi|344211175|ref|YP_004795495.1| - 0.0071 16.4 2.2 0.0088 16.1 0.4 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain DICT PF10069.9 gi|344211176|ref|YP_004795496.1| - 3.2e-15 56.0 0.0 6.1e-15 55.1 0.0 1.4 2 0 0 2 2 2 1 Sensory domain in DIguanylate Cyclases and Two-component system PGA_cap PF09587.10 gi|344211177|ref|YP_004795497.1| - 3e-67 226.8 0.0 3.6e-67 226.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap FAD_binding_2 PF00890.24 gi|344211179|ref|YP_004795499.1| - 5.7e-91 305.7 3.0 7e-91 305.4 3.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|344211179|ref|YP_004795499.1| - 6.7e-19 68.1 0.0 1.5e-18 67.0 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|344211179|ref|YP_004795499.1| - 2.1e-07 30.9 0.4 8e-07 29.0 0.4 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|344211179|ref|YP_004795499.1| - 4.6e-05 22.8 2.2 0.0004 19.7 0.6 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|344211179|ref|YP_004795499.1| - 0.00092 18.6 1.2 0.0015 17.9 1.2 1.4 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|344211179|ref|YP_004795499.1| - 0.0012 17.7 2.4 0.96 8.1 1.5 3.0 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|344211179|ref|YP_004795499.1| - 0.023 13.9 1.1 0.023 13.9 1.1 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344211179|ref|YP_004795499.1| - 0.04 13.6 0.1 0.063 12.9 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|344211179|ref|YP_004795499.1| - 0.049 12.7 0.5 0.09 11.8 0.5 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|344211179|ref|YP_004795499.1| - 0.11 12.7 4.0 0.089 13.0 1.5 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.21 gi|344211179|ref|YP_004795499.1| - 0.23 10.8 0.2 0.37 10.1 0.2 1.2 1 0 0 1 1 1 0 ThiF family Thi4 PF01946.17 gi|344211179|ref|YP_004795499.1| - 0.73 9.0 2.9 13 4.9 0.4 2.4 2 0 0 2 2 2 0 Thi4 family Na_H_antiporter PF03553.14 gi|344211180|ref|YP_004795500.1| - 1.1e-54 185.8 42.8 2.1e-52 178.2 21.3 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family ABC_tran PF00005.27 gi|344211181|ref|YP_004795501.1| - 7.3e-33 114.0 0.0 1.5e-32 113.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|344211181|ref|YP_004795501.1| - 1.9e-12 47.1 0.1 1.9e-12 47.1 0.1 3.3 3 1 1 4 4 4 1 TOBE domain AAA_21 PF13304.6 gi|344211181|ref|YP_004795501.1| - 3.2e-08 33.7 0.0 0.00062 19.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|344211181|ref|YP_004795501.1| - 3.7e-05 23.9 3.9 0.0012 19.1 0.0 3.5 3 1 0 3 3 3 1 TOBE domain AAA_22 PF13401.6 gi|344211181|ref|YP_004795501.1| - 0.00039 20.7 0.0 0.0014 18.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344211181|ref|YP_004795501.1| - 0.002 17.9 0.4 0.078 12.7 0.1 3.1 2 1 1 3 3 3 1 AAA domain SMC_N PF02463.19 gi|344211181|ref|YP_004795501.1| - 0.002 17.6 0.0 0.1 12.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344211181|ref|YP_004795501.1| - 0.0027 18.1 0.1 0.0055 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|344211181|ref|YP_004795501.1| - 0.0031 17.9 0.3 0.065 13.7 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|344211181|ref|YP_004795501.1| - 0.011 15.6 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain ABC_ATPase PF09818.9 gi|344211181|ref|YP_004795501.1| - 0.016 14.1 0.1 0.11 11.2 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|344211181|ref|YP_004795501.1| - 0.018 14.6 0.0 0.091 12.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|344211181|ref|YP_004795501.1| - 0.038 13.9 0.0 0.083 12.8 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|344211181|ref|YP_004795501.1| - 0.11 12.7 0.7 0.33 11.2 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|344211181|ref|YP_004795501.1| - 0.13 12.3 0.0 0.34 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|344211181|ref|YP_004795501.1| - 0.15 12.5 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344211181|ref|YP_004795501.1| - 0.25 11.0 0.0 0.37 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|344211182|ref|YP_004795502.1| - 3e-31 108.6 41.9 4.9e-17 62.3 13.2 3.5 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|344211183|ref|YP_004795503.1| - 3.2e-18 66.0 0.0 4.4e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|344211183|ref|YP_004795503.1| - 5.2e-18 65.9 0.0 7e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344211183|ref|YP_004795503.1| - 2.4e-12 47.5 0.2 3.1e-12 47.1 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|344211183|ref|YP_004795503.1| - 5.2e-05 23.1 0.0 9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344211183|ref|YP_004795503.1| - 0.15 11.9 3.4 0.33 10.9 3.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TraQ PF09679.10 gi|344211184|ref|YP_004795504.1| - 0.49 10.3 3.6 0.81 9.6 3.6 1.4 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) AP_endonuc_2 PF01261.24 gi|344211185|ref|YP_004795505.1| - 2.6e-08 33.6 0.0 0.00017 21.1 0.0 2.3 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel E1_dh PF00676.20 gi|344211186|ref|YP_004795506.1| - 2.1e-75 253.5 0.0 2.7e-75 253.1 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|344211186|ref|YP_004795506.1| - 5.9e-05 22.4 0.0 8.8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase HTH_41 PF14502.6 gi|344211186|ref|YP_004795506.1| - 0.024 14.3 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FliD_C PF07195.12 gi|344211187|ref|YP_004795507.1| - 0.053 12.9 0.0 0.28 10.6 0.0 1.9 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Hemerythrin PF01814.23 gi|344211187|ref|YP_004795507.1| - 0.053 14.1 0.1 28 5.3 0.0 2.8 3 0 0 3 3 3 0 Hemerythrin HHE cation binding domain Nramp PF01566.18 gi|344211188|ref|YP_004795508.1| - 2.5e-65 220.8 32.5 3.9e-65 220.2 32.5 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF3918 PF13056.6 gi|344211188|ref|YP_004795508.1| - 0.14 11.7 0.1 0.54 9.9 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3918) AAA_16 PF13191.6 gi|344211189|ref|YP_004795509.1| - 0.014 15.8 0.2 0.019 15.3 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|344211189|ref|YP_004795509.1| - 0.041 13.0 0.3 0.32 10.0 0.1 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein Y2_Tnp PF04986.13 gi|344211189|ref|YP_004795509.1| - 0.17 11.9 0.1 0.55 10.2 0.0 1.7 1 1 1 2 2 2 0 Putative transposase PEP-CTERM PF07589.11 gi|344211191|ref|YP_004795511.1| - 0.0031 17.5 1.8 0.042 13.9 0.1 2.3 2 0 0 2 2 2 1 PEP-CTERM motif PGPGW PF09656.10 gi|344211191|ref|YP_004795511.1| - 0.035 13.6 4.4 0.038 13.5 4.4 1.1 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) KH_7 PF17214.3 gi|344211192|ref|YP_004795512.1| - 3.2e-30 103.9 1.7 1.9e-28 98.2 0.6 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|344211192|ref|YP_004795512.1| - 6.9e-20 71.4 0.0 1.4e-19 70.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|344211192|ref|YP_004795512.1| - 6.2e-17 61.3 0.0 1.4e-16 60.2 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|344211192|ref|YP_004795512.1| - 9.8e-14 51.8 3.0 3e-13 50.2 3.0 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|344211192|ref|YP_004795512.1| - 4.1e-11 42.7 0.0 7e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|344211192|ref|YP_004795512.1| - 8.9e-11 41.7 0.1 1.6e-10 40.9 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|344211192|ref|YP_004795512.1| - 1.7e-06 27.7 0.1 4.4e-06 26.4 0.0 1.8 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|344211192|ref|YP_004795512.1| - 0.00061 19.7 0.0 0.0015 18.4 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|344211192|ref|YP_004795512.1| - 0.032 14.1 0.1 0.083 12.8 0.1 1.7 1 0 0 1 1 1 0 KH domain KH_1 PF00013.29 gi|344211192|ref|YP_004795512.1| - 0.088 12.6 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 KH domain Iron_transport PF10634.9 gi|344211194|ref|YP_004795514.1| - 0.00021 21.5 0.1 0.0018 18.5 0.0 2.3 2 1 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|344211194|ref|YP_004795514.1| - 0.088 12.7 1.6 0.24 11.3 1.6 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GHL5 PF14872.6 gi|344211195|ref|YP_004795515.1| - 0.15 10.1 0.0 0.15 10.1 0.0 1.0 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 Dyp_perox PF04261.12 gi|344211196|ref|YP_004795516.1| - 9.7e-06 24.8 0.1 0.00012 21.2 0.1 2.4 1 1 0 1 1 1 1 Dyp-type peroxidase family HTH_20 PF12840.7 gi|344211197|ref|YP_004795517.1| - 1.8e-13 50.3 4.2 1.7e-07 31.2 1.3 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|344211197|ref|YP_004795517.1| - 2.5e-09 36.8 0.4 4.9e-06 26.3 0.1 2.9 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|344211197|ref|YP_004795517.1| - 3.8e-08 32.8 0.0 4.3e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344211197|ref|YP_004795517.1| - 7.9e-08 32.1 5.9 6.1e-05 22.8 0.9 3.2 2 1 1 3 3 3 2 MarR family TrmB PF01978.19 gi|344211197|ref|YP_004795517.1| - 6.3e-06 26.0 0.0 7.4e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344211197|ref|YP_004795517.1| - 6.8e-06 25.8 0.9 0.00045 20.0 0.3 2.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 gi|344211197|ref|YP_004795517.1| - 0.0014 18.5 0.0 0.033 14.1 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_10 PF04967.12 gi|344211197|ref|YP_004795517.1| - 0.015 15.1 0.0 0.31 10.9 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain Rrf2 PF02082.20 gi|344211197|ref|YP_004795517.1| - 0.069 13.5 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator FaeA PF04703.12 gi|344211197|ref|YP_004795517.1| - 0.1 13.0 0.0 2.7 8.4 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein Penicillinase_R PF03965.16 gi|344211197|ref|YP_004795517.1| - 0.18 12.2 0.1 1.1 9.6 0.0 2.1 2 1 0 2 2 2 0 Penicillinase repressor DUF1129 PF06570.11 gi|344211198|ref|YP_004795518.1| - 0.041 13.4 1.3 0.05 13.1 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) GPHR_N PF12537.8 gi|344211198|ref|YP_004795518.1| - 0.092 12.8 0.2 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF2929 PF11151.8 gi|344211198|ref|YP_004795518.1| - 0.29 11.4 0.2 0.29 11.4 0.2 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) CitMHS PF03600.16 gi|344211198|ref|YP_004795518.1| - 0.49 9.5 4.6 0.91 8.7 4.9 1.3 1 1 0 1 1 1 0 Citrate transporter SAM_adeno_trans PF01887.16 gi|344211200|ref|YP_004795520.1| - 9.7e-14 51.4 0.0 2.1e-13 50.3 0.0 1.5 1 1 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase HGTP_anticodon PF03129.20 gi|344211201|ref|YP_004795521.1| - 5.6e-21 74.5 0.4 9.9e-21 73.7 0.1 1.6 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|344211201|ref|YP_004795521.1| - 1.5e-19 70.7 0.0 2.5e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|344211201|ref|YP_004795521.1| - 1.3e-18 66.9 0.3 3.9e-18 65.4 0.3 1.9 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal YceD PF02620.17 gi|344211201|ref|YP_004795521.1| - 0.057 13.5 0.9 0.26 11.4 0.7 2.1 2 0 0 2 2 2 0 Large ribosomal RNA subunit accumulation protein YceD VATC PF18716.1 gi|344211201|ref|YP_004795521.1| - 2.1 8.3 3.7 1 9.3 0.1 2.2 2 0 0 2 2 2 0 Vms1-associating treble clef domain Patatin PF01734.22 gi|344211202|ref|YP_004795522.1| - 2.6e-16 60.4 0.1 5.6e-16 59.3 0.1 1.6 1 0 0 1 1 1 1 Patatin-like phospholipase CBS PF00571.28 gi|344211204|ref|YP_004795524.1| - 4.2e-28 97.5 3.6 7.1e-15 55.2 0.3 2.1 2 0 0 2 2 2 2 CBS domain GATase_2 PF00310.21 gi|344211205|ref|YP_004795525.1| - 8.6e-158 525.5 0.0 1.1e-157 525.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|344211205|ref|YP_004795525.1| - 3.1e-149 497.1 0.1 1.7e-146 488.1 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|344211205|ref|YP_004795525.1| - 7.9e-116 386.4 0.0 4.5e-114 380.7 0.0 2.2 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|344211205|ref|YP_004795525.1| - 6.2e-79 264.0 8.8 1.1e-78 263.3 8.8 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|344211205|ref|YP_004795525.1| - 0.00052 19.5 1.1 0.0009 18.7 1.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|344211205|ref|YP_004795525.1| - 0.0025 16.9 2.1 0.0025 16.9 2.1 2.5 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Band_7 PF01145.25 gi|344211206|ref|YP_004795526.1| - 7.2e-26 91.3 11.7 1e-25 90.8 11.2 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|344211206|ref|YP_004795526.1| - 0.0024 17.6 0.1 0.0035 17.1 0.1 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family FliL PF03748.14 gi|344211206|ref|YP_004795526.1| - 0.012 16.2 0.2 0.012 16.2 0.2 2.1 2 0 0 2 2 2 0 Flagellar basal body-associated protein FliL Pilin_N PF07790.11 gi|344211207|ref|YP_004795527.1| - 6.7e-05 23.7 2.7 0.00018 22.3 1.1 2.3 2 1 1 3 3 3 1 Archaeal Type IV pilin, N-terminal Epimerase PF01370.21 gi|344211208|ref|YP_004795528.1| - 6.4e-28 97.8 1.0 1e-25 90.6 1.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|344211208|ref|YP_004795528.1| - 1.8e-06 27.3 0.2 0.004 16.3 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|344211208|ref|YP_004795528.1| - 7.1e-06 25.2 0.0 0.0015 17.6 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|344211208|ref|YP_004795528.1| - 1.5e-05 25.0 0.2 2.3e-05 24.3 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|344211208|ref|YP_004795528.1| - 7.2e-05 22.3 0.0 0.19 11.1 0.0 2.2 2 0 0 2 2 2 2 GDP-mannose 4,6 dehydratase NmrA PF05368.13 gi|344211208|ref|YP_004795528.1| - 0.0018 17.8 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|344211208|ref|YP_004795528.1| - 0.086 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Regulator_TrmB PF11495.8 gi|344211209|ref|YP_004795529.1| - 1.6e-60 204.2 0.0 1.9e-60 203.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|344211209|ref|YP_004795529.1| - 2e-17 62.8 0.0 4e-17 61.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344211209|ref|YP_004795529.1| - 0.029 14.3 0.0 0.069 13.1 0.0 1.7 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|344211209|ref|YP_004795529.1| - 0.033 14.5 0.0 0.082 13.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|344211209|ref|YP_004795529.1| - 0.04 13.7 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain Glyco_hydro_3 PF00933.21 gi|344211210|ref|YP_004795530.1| - 6e-62 209.8 0.0 7.8e-62 209.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|344211210|ref|YP_004795530.1| - 1.7e-36 126.1 0.0 3.4e-36 125.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|344211210|ref|YP_004795530.1| - 1.9e-11 43.9 0.2 3.9e-11 42.9 0.2 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain TAT_signal PF10518.9 gi|344211210|ref|YP_004795530.1| - 1.6e-05 24.5 8.9 3.6e-05 23.4 8.9 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|344211210|ref|YP_004795530.1| - 0.23 10.9 3.2 0.84 9.0 3.2 2.0 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fe-ADH_2 PF13685.6 gi|344211211|ref|YP_004795531.1| - 8.5e-62 209.1 3.2 1.1e-61 208.8 3.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|344211211|ref|YP_004795531.1| - 2.1e-18 66.3 4.7 5.2e-18 65.0 4.7 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|344211211|ref|YP_004795531.1| - 1.1e-09 37.8 0.2 2.9e-09 36.5 0.2 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase NUDIX PF00293.28 gi|344211212|ref|YP_004795532.1| - 0.00013 22.0 0.1 0.00019 21.5 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Peptidase_S9 PF00326.21 gi|344211213|ref|YP_004795533.1| - 2.6e-47 161.0 0.0 4.2e-47 160.3 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|344211213|ref|YP_004795533.1| - 3.3e-13 49.9 0.1 6.8e-07 29.2 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|344211213|ref|YP_004795533.1| - 2.2e-12 47.2 0.0 9.7e-08 31.9 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 gi|344211213|ref|YP_004795533.1| - 1.9e-11 43.6 2.5 6.5e-06 25.9 0.2 4.8 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|344211213|ref|YP_004795533.1| - 2.2e-11 43.7 0.0 6.1e-11 42.3 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|344211213|ref|YP_004795533.1| - 4.5e-11 42.5 0.4 9.7e-07 28.3 0.1 2.7 2 1 1 3 3 3 2 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|344211213|ref|YP_004795533.1| - 2.7e-06 26.3 0.0 0.013 14.2 0.0 2.2 1 1 0 2 2 2 2 Acetyl xylan esterase (AXE1) Peptidase_S9_N PF02897.15 gi|344211213|ref|YP_004795533.1| - 5.5e-05 22.1 0.0 8.3e-05 21.6 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain DPPIV_N PF00930.21 gi|344211213|ref|YP_004795533.1| - 6.2e-05 21.9 0.0 1.3 7.7 0.0 4.0 3 1 1 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_3 PF07859.13 gi|344211213|ref|YP_004795533.1| - 0.00061 19.7 0.1 0.016 15.1 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|344211213|ref|YP_004795533.1| - 0.0017 19.0 6.9 0.0025 18.5 2.0 3.0 2 1 0 2 2 2 1 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|344211213|ref|YP_004795533.1| - 0.0078 16.2 0.0 0.23 11.3 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.16 gi|344211213|ref|YP_004795533.1| - 0.0081 16.0 0.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Esterase PF00756.20 gi|344211213|ref|YP_004795533.1| - 0.015 15.0 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Putative esterase Abhydrolase_4 PF08386.10 gi|344211213|ref|YP_004795533.1| - 0.05 13.7 0.0 0.093 12.9 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein LIP PF03583.14 gi|344211213|ref|YP_004795533.1| - 0.095 12.0 0.1 8.5 5.6 0.1 2.1 1 1 0 2 2 2 0 Secretory lipase Peptidase_S28 PF05577.12 gi|344211213|ref|YP_004795533.1| - 0.11 11.3 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF829 PF05705.14 gi|344211213|ref|YP_004795533.1| - 0.15 11.9 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) DUF2339 PF10101.9 gi|344211214|ref|YP_004795534.1| - 3.6e-47 161.4 88.2 1.8e-26 93.0 55.5 3.1 1 1 2 3 3 3 3 Predicted membrane protein (DUF2339) Trimer_CC PF08954.11 gi|344211214|ref|YP_004795534.1| - 0.011 15.3 0.5 0.032 13.8 0.5 1.7 1 0 0 1 1 1 0 Trimerisation motif PspB PF06667.12 gi|344211214|ref|YP_004795534.1| - 0.054 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Phage shock protein B CLZ PF16526.5 gi|344211214|ref|YP_004795534.1| - 0.097 13.0 0.1 0.17 12.3 0.1 1.3 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Pox_A_type_inc PF04508.12 gi|344211214|ref|YP_004795534.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat DUF997 PF06196.12 gi|344211214|ref|YP_004795534.1| - 0.87 9.6 4.1 1.7 8.7 1.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF997) Glyco_trans_4_4 PF13579.6 gi|344211215|ref|YP_004795535.1| - 1.8e-19 70.8 10.1 3.1e-18 66.7 9.2 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|344211215|ref|YP_004795535.1| - 2.2e-17 63.6 0.2 9.4e-17 61.5 0.2 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|344211215|ref|YP_004795535.1| - 1.5e-15 57.2 0.0 2.9e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211215|ref|YP_004795535.1| - 1.2e-13 51.7 0.0 6.6e-13 49.3 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344211215|ref|YP_004795535.1| - 2.5e-06 27.6 0.0 1.3e-05 25.2 0.0 2.1 2 1 1 3 3 3 1 Glycosyl transferase 4-like DUF5402 PF17393.2 gi|344211215|ref|YP_004795535.1| - 0.11 12.5 0.1 8.4 6.4 0.1 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5402) Na_H_antiporter PF03553.14 gi|344211216|ref|YP_004795536.1| - 8.7e-39 133.5 28.0 3.7e-38 131.5 17.3 3.4 2 1 1 3 3 3 2 Na+/H+ antiporter family DcuC PF03606.15 gi|344211216|ref|YP_004795536.1| - 5.1e-06 25.2 11.1 0.0067 14.9 6.3 2.3 2 0 0 2 2 2 2 C4-dicarboxylate anaerobic carrier DUF2970 PF11174.8 gi|344211216|ref|YP_004795536.1| - 0.011 15.6 15.3 0.072 12.9 0.2 5.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2970) ERCC3_RAD25_C PF16203.5 gi|344211217|ref|YP_004795537.1| - 2.4e-21 76.1 0.0 3.3e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|344211217|ref|YP_004795537.1| - 2.2e-17 63.6 0.0 5e-17 62.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|344211217|ref|YP_004795537.1| - 5.5e-13 49.2 0.0 1.1e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|344211217|ref|YP_004795537.1| - 3.8e-12 45.6 0.0 4.7e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|344211217|ref|YP_004795537.1| - 2e-07 30.9 0.0 5.6e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|344211217|ref|YP_004795537.1| - 0.00045 19.8 1.7 0.045 13.3 0.2 3.4 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|344211217|ref|YP_004795537.1| - 0.0021 18.5 0.0 0.0057 17.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|344211217|ref|YP_004795537.1| - 0.0035 17.1 0.0 0.0095 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344211217|ref|YP_004795537.1| - 0.0088 16.3 0.5 0.2 11.9 0.5 2.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344211217|ref|YP_004795537.1| - 0.052 13.7 0.0 0.21 11.7 0.0 2.0 1 0 0 1 1 1 0 AAA domain DUF4283 PF14111.6 gi|344211217|ref|YP_004795537.1| - 0.066 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) AAA_5 PF07728.14 gi|344211217|ref|YP_004795537.1| - 0.082 12.9 0.2 0.92 9.5 0.0 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_11 PF13086.6 gi|344211217|ref|YP_004795537.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|344211217|ref|YP_004795537.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|344211217|ref|YP_004795537.1| - 0.21 12.0 0.0 0.45 10.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MCPsignal PF00015.21 gi|344211218|ref|YP_004795538.1| - 2.1e-50 170.9 56.3 8.3e-47 159.2 29.8 3.9 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|344211218|ref|YP_004795538.1| - 1.3e-36 125.8 1.9 6.8e-36 123.5 0.6 2.5 2 0 0 2 2 2 1 Protoglobin DUF948 PF06103.11 gi|344211218|ref|YP_004795538.1| - 1.6e-07 31.4 43.2 0.0078 16.4 3.0 5.4 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|344211218|ref|YP_004795538.1| - 0.00033 20.7 39.2 0.096 12.7 5.4 4.8 4 1 1 5 5 4 2 Laminin Domain II DUF1664 PF07889.12 gi|344211218|ref|YP_004795538.1| - 0.00049 20.1 34.7 0.13 12.3 4.5 4.8 3 2 2 5 5 4 3 Protein of unknown function (DUF1664) HOOK PF05622.12 gi|344211218|ref|YP_004795538.1| - 0.00053 18.3 27.5 0.0019 16.5 15.1 2.1 1 1 1 2 2 2 2 HOOK protein BLOC1_2 PF10046.9 gi|344211218|ref|YP_004795538.1| - 0.0009 19.5 35.2 0.14 12.5 1.8 6.2 3 2 2 6 6 6 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 NOG1_N PF17835.1 gi|344211218|ref|YP_004795538.1| - 0.002 18.1 1.7 1.8 8.5 0.2 3.2 3 0 0 3 3 2 1 NOG1 N-terminal helical domain MAD PF05557.13 gi|344211218|ref|YP_004795538.1| - 0.0026 16.2 7.5 0.0026 16.2 7.5 2.2 1 1 1 2 2 2 1 Mitotic checkpoint protein DUF4200 PF13863.6 gi|344211218|ref|YP_004795538.1| - 0.0049 17.3 19.8 0.42 11.0 3.5 4.3 2 2 2 4 4 4 3 Domain of unknown function (DUF4200) TMPIT PF07851.13 gi|344211218|ref|YP_004795538.1| - 0.017 14.4 17.4 0.24 10.6 4.6 2.9 2 1 0 2 2 2 0 TMPIT-like protein Spc7 PF08317.11 gi|344211218|ref|YP_004795538.1| - 0.021 13.7 31.7 0.14 11.0 10.3 2.9 1 1 2 3 3 3 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|344211218|ref|YP_004795538.1| - 0.029 14.9 28.9 0.062 13.8 1.8 5.1 3 2 3 6 6 6 0 Syntaxin 6, N-terminal ATG16 PF08614.11 gi|344211218|ref|YP_004795538.1| - 0.074 13.3 31.4 0.17 12.1 12.3 3.0 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) TMP_2 PF06791.13 gi|344211218|ref|YP_004795538.1| - 0.085 12.5 33.2 0.36 10.5 6.7 3.6 1 1 1 3 3 3 0 Prophage tail length tape measure protein Bac_globin PF01152.21 gi|344211218|ref|YP_004795538.1| - 0.11 12.6 0.0 0.86 9.8 0.0 2.6 1 1 0 1 1 1 0 Bacterial-like globin YkyA PF10368.9 gi|344211218|ref|YP_004795538.1| - 0.12 12.0 41.5 0.19 11.4 12.7 3.7 3 1 0 3 3 3 0 Putative cell-wall binding lipoprotein SKA2 PF16740.5 gi|344211218|ref|YP_004795538.1| - 0.13 12.1 18.3 0.18 11.6 2.6 3.9 3 1 1 4 4 3 0 Spindle and kinetochore-associated protein 2 Fib_alpha PF08702.10 gi|344211218|ref|YP_004795538.1| - 0.13 12.4 27.2 0.1 12.8 3.3 4.9 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family UPF0242 PF06785.11 gi|344211218|ref|YP_004795538.1| - 0.15 12.1 22.8 0.26 11.4 4.8 4.2 2 1 2 4 4 4 0 Uncharacterised protein family (UPF0242) N-terminus CREPT PF16566.5 gi|344211218|ref|YP_004795538.1| - 0.16 12.1 15.1 4.3 7.5 1.4 4.0 1 1 3 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour CorA PF01544.18 gi|344211218|ref|YP_004795538.1| - 0.16 11.2 24.6 0.68 9.2 4.1 3.5 2 1 2 4 4 4 0 CorA-like Mg2+ transporter protein NPV_P10 PF05531.12 gi|344211218|ref|YP_004795538.1| - 0.16 12.4 40.7 0.66 10.5 2.0 6.4 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein TolA_bind_tri PF16331.5 gi|344211218|ref|YP_004795538.1| - 0.19 11.8 24.6 0.84 9.8 3.5 5.6 5 1 0 5 5 4 0 TolA binding protein trimerisation FlaC_arch PF05377.11 gi|344211218|ref|YP_004795538.1| - 0.2 12.1 31.1 1.8 9.0 0.2 6.8 4 2 2 6 6 6 0 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.12 gi|344211218|ref|YP_004795538.1| - 0.23 11.5 34.3 0.032 14.3 3.9 4.4 2 1 2 4 4 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZapB PF06005.12 gi|344211218|ref|YP_004795538.1| - 0.27 11.7 26.0 0.063 13.7 2.4 5.2 3 2 2 5 5 4 0 Cell division protein ZapB ERM PF00769.19 gi|344211218|ref|YP_004795538.1| - 0.28 10.9 32.8 0.81 9.5 13.0 2.3 2 0 0 2 2 2 0 Ezrin/radixin/moesin family DUF3450 PF11932.8 gi|344211218|ref|YP_004795538.1| - 0.31 10.3 43.4 0.85 8.9 8.2 4.8 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) FlgN PF05130.12 gi|344211218|ref|YP_004795538.1| - 0.4 11.2 33.9 0.83 10.2 9.4 4.4 1 1 4 5 5 5 0 FlgN protein DUF148 PF02520.17 gi|344211218|ref|YP_004795538.1| - 0.48 10.5 33.6 0.12 12.5 5.1 4.9 2 2 2 4 4 4 0 Domain of unknown function DUF148 Flagellin_IN PF07196.13 gi|344211218|ref|YP_004795538.1| - 0.73 10.1 6.4 2.3 8.5 0.7 3.0 2 0 0 2 2 2 0 Flagellin hook IN motif GLE1 PF07817.13 gi|344211218|ref|YP_004795538.1| - 0.83 8.8 5.6 1.3 8.2 0.4 3.0 2 1 1 3 3 3 0 GLE1-like protein Peptidase_S64 PF08192.11 gi|344211218|ref|YP_004795538.1| - 0.88 8.0 14.6 0.74 8.2 13.5 1.4 1 1 0 1 1 1 0 Peptidase family S64 Med30 PF11315.8 gi|344211218|ref|YP_004795538.1| - 0.98 9.6 14.0 3.1 8.0 1.6 4.0 2 1 2 4 4 3 0 Mediator complex subunit 30 Exonuc_VII_S PF02609.16 gi|344211218|ref|YP_004795538.1| - 0.99 9.5 8.2 31 4.7 2.2 4.5 4 1 0 4 4 3 0 Exonuclease VII small subunit AIP3 PF03915.13 gi|344211218|ref|YP_004795538.1| - 0.99 8.4 32.6 1.3 8.1 15.2 2.4 1 1 1 2 2 2 0 Actin interacting protein 3 COG2 PF06148.11 gi|344211218|ref|YP_004795538.1| - 1.1 9.3 27.2 3.4 7.8 3.2 5.3 3 2 3 6 6 5 0 COG (conserved oligomeric Golgi) complex component, COG2 COG5 PF10392.9 gi|344211218|ref|YP_004795538.1| - 1.1 9.4 15.9 5.1 7.3 0.8 4.6 1 1 4 5 5 5 0 Golgi transport complex subunit 5 Kre28 PF17097.5 gi|344211218|ref|YP_004795538.1| - 1.3 7.9 32.2 0.6 9.0 10.7 3.0 2 1 1 3 3 3 0 Spindle pole body component IFT57 PF10498.9 gi|344211218|ref|YP_004795538.1| - 1.4 7.8 30.2 3.6 6.5 13.8 3.2 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 LXG PF04740.12 gi|344211218|ref|YP_004795538.1| - 1.7 8.3 40.9 1.1 9.0 11.5 4.3 3 2 1 4 4 4 0 LXG domain of WXG superfamily LOH1CR12 PF10158.9 gi|344211218|ref|YP_004795538.1| - 1.7 8.7 19.1 0.26 11.3 2.3 4.0 3 1 1 4 4 3 0 Tumour suppressor protein DUF3584 PF12128.8 gi|344211218|ref|YP_004795538.1| - 1.8 6.0 37.6 1.9 5.9 25.9 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3584) Vip3A_N PF12495.8 gi|344211218|ref|YP_004795538.1| - 1.8 8.4 10.0 22 4.9 0.8 3.6 2 2 0 2 2 2 0 Vegetative insecticide protein 3A N terminal Atg14 PF10186.9 gi|344211218|ref|YP_004795538.1| - 1.9 7.5 14.3 3 6.8 1.2 3.2 1 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Golgin_A5 PF09787.9 gi|344211218|ref|YP_004795538.1| - 3.4 7.1 33.9 0.31 10.5 11.6 3.0 1 1 2 3 3 3 0 Golgin subfamily A member 5 Tweety PF04906.13 gi|344211218|ref|YP_004795538.1| - 3.5 6.2 13.9 0.9 8.1 1.8 2.9 2 1 1 3 3 3 0 Tweety CENP-F_leu_zip PF10473.9 gi|344211218|ref|YP_004795538.1| - 3.6 7.6 28.6 1.1 9.2 11.2 3.2 2 2 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spectrin PF00435.21 gi|344211218|ref|YP_004795538.1| - 3.9 8.0 26.6 0.23 12.0 4.6 4.4 2 2 2 4 4 4 0 Spectrin repeat Fez1 PF06818.15 gi|344211218|ref|YP_004795538.1| - 4.5 7.7 25.1 2.8 8.3 5.8 3.1 2 1 0 2 2 2 0 Fez1 Allexi_40kDa PF05549.11 gi|344211218|ref|YP_004795538.1| - 5.2 6.5 21.8 0.43 10.1 4.7 3.3 2 1 1 4 4 4 0 Allexivirus 40kDa protein HSBP1 PF06825.12 gi|344211218|ref|YP_004795538.1| - 5.5 6.9 19.2 0.31 10.9 0.6 5.2 6 1 1 7 7 4 0 Heat shock factor binding protein 1 Dor1 PF04124.12 gi|344211218|ref|YP_004795538.1| - 6.8 5.3 21.9 2.6 6.7 4.4 3.7 2 1 1 4 4 3 0 Dor1-like family PspA_IM30 PF04012.12 gi|344211218|ref|YP_004795538.1| - 7.7 6.0 40.6 0.72 9.4 16.1 3.5 2 2 1 3 3 3 0 PspA/IM30 family SKA1 PF07160.12 gi|344211218|ref|YP_004795538.1| - 8.6 6.1 20.0 5.2 6.8 6.4 2.6 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Methyltransf_25 PF13649.6 gi|344211220|ref|YP_004795540.1| - 1.8e-09 38.2 0.0 2.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344211220|ref|YP_004795540.1| - 2.3e-08 34.6 0.0 3.7e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344211220|ref|YP_004795540.1| - 5.1e-06 26.4 0.0 6.7e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|344211220|ref|YP_004795540.1| - 8.6e-06 25.2 0.0 1.1e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|344211220|ref|YP_004795540.1| - 1.1e-05 25.3 0.0 1.2e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211220|ref|YP_004795540.1| - 0.00019 22.1 0.0 0.00027 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|344211220|ref|YP_004795540.1| - 0.00057 19.5 0.0 0.00062 19.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|344211220|ref|YP_004795540.1| - 0.00076 19.1 0.0 0.00091 18.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|344211220|ref|YP_004795540.1| - 0.013 14.9 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family TPMT PF05724.11 gi|344211220|ref|YP_004795540.1| - 0.039 13.6 0.0 0.05 13.2 0.0 1.1 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_18 PF12847.7 gi|344211220|ref|YP_004795540.1| - 0.077 12.9 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|344211220|ref|YP_004795540.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA methylase PCMT PF01135.19 gi|344211220|ref|YP_004795540.1| - 0.22 11.2 0.0 0.29 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Pterin_bind PF00809.22 gi|344211221|ref|YP_004795541.1| - 3.6e-80 269.2 0.1 5.8e-80 268.5 0.1 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|344211221|ref|YP_004795541.1| - 1.5e-10 41.4 0.0 2.8e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|344211221|ref|YP_004795541.1| - 4.8e-10 39.6 0.0 1.4e-09 38.0 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.6 gi|344211221|ref|YP_004795541.1| - 0.00028 20.4 2.9 0.11 11.9 0.0 3.5 2 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase DUF21 PF01595.20 gi|344211223|ref|YP_004795543.1| - 0.00016 21.4 0.1 0.00019 21.2 0.1 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain SHOCT PF09851.9 gi|344211223|ref|YP_004795543.1| - 0.00091 18.9 2.2 0.0018 17.9 2.2 1.6 1 0 0 1 1 1 1 Short C-terminal domain Snf7 PF03357.21 gi|344211223|ref|YP_004795543.1| - 0.33 10.5 1.4 0.44 10.1 1.4 1.1 1 0 0 1 1 1 0 Snf7 Form_Nir_trans PF01226.17 gi|344211224|ref|YP_004795544.1| - 8e-40 136.7 18.5 9.3e-40 136.4 18.5 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter AICARFT_IMPCHas PF01808.18 gi|344211225|ref|YP_004795545.1| - 8.7e-86 288.0 0.0 1.2e-85 287.6 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|344211225|ref|YP_004795545.1| - 6.1e-42 143.4 0.0 1.2e-41 142.5 0.0 1.5 1 0 0 1 1 1 1 Formyl transferase LPD22 PF18834.1 gi|344211225|ref|YP_004795545.1| - 0.032 14.4 0.1 0.16 12.2 0.2 2.1 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 ADH_zinc_N PF00107.26 gi|344211227|ref|YP_004795547.1| - 1.7e-26 92.7 0.6 3e-26 91.9 0.4 1.5 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|344211227|ref|YP_004795547.1| - 4.9e-26 90.7 1.0 8.5e-26 90.0 0.3 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|344211227|ref|YP_004795547.1| - 4.8e-05 22.7 1.2 6.9e-05 22.2 1.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N_2 PF13602.6 gi|344211227|ref|YP_004795547.1| - 0.00082 20.4 0.1 0.0031 18.6 0.1 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|344211227|ref|YP_004795547.1| - 0.0017 17.8 0.1 0.0029 17.0 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|344211227|ref|YP_004795547.1| - 0.0068 16.7 0.5 0.022 15.0 0.3 1.8 2 0 0 2 2 2 1 TrkA-N domain Glu_dehyd_C PF16912.5 gi|344211227|ref|YP_004795547.1| - 0.007 15.9 0.4 0.011 15.3 0.4 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Methyltransf_25 PF13649.6 gi|344211227|ref|YP_004795547.1| - 0.015 16.0 0.2 0.041 14.6 0.2 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344211227|ref|YP_004795547.1| - 0.07 13.8 0.3 0.19 12.4 0.2 1.9 2 1 0 2 2 2 0 Methyltransferase domain Lyase_1 PF00206.20 gi|344211228|ref|YP_004795548.1| - 3.7e-51 174.4 0.0 4.8e-51 174.0 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|344211228|ref|YP_004795548.1| - 3.8e-42 143.0 0.0 7.2e-42 142.1 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ScsC_N PF18312.1 gi|344211228|ref|YP_004795548.1| - 0.13 12.1 0.4 0.55 10.1 0.0 2.1 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain MFS_1 PF07690.16 gi|344211229|ref|YP_004795549.1| - 8.3e-53 179.5 56.2 4.5e-28 98.2 25.2 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|344211229|ref|YP_004795549.1| - 3.7e-12 45.8 25.6 6.2e-07 28.6 9.7 2.6 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|344211229|ref|YP_004795549.1| - 6.1e-11 41.8 19.1 3.1e-09 36.2 19.1 3.2 1 1 0 1 1 1 1 MFS_1 like family MFS_4 PF06779.14 gi|344211229|ref|YP_004795549.1| - 1e-06 28.3 29.5 2.1e-06 27.3 29.5 1.8 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF697 PF05128.12 gi|344211229|ref|YP_004795549.1| - 2.1 8.1 5.5 24 4.6 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF697) Pribosyltran PF00156.27 gi|344211230|ref|YP_004795550.1| - 1.4e-21 76.6 0.3 2.7e-20 72.5 0.3 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|344211230|ref|YP_004795550.1| - 0.0012 18.4 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|344211230|ref|YP_004795550.1| - 0.092 12.2 0.0 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase M20_dimer PF07687.14 gi|344211231|ref|YP_004795551.1| - 1.7e-22 79.4 0.0 2.8e-22 78.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|344211231|ref|YP_004795551.1| - 1.5e-21 77.0 0.1 4.7e-21 75.4 0.1 1.7 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|344211231|ref|YP_004795551.1| - 0.052 13.2 0.1 0.082 12.6 0.1 1.4 1 0 0 1 1 1 0 Peptidase family M28 Orn_Arg_deC_N PF02784.16 gi|344211232|ref|YP_004795552.1| - 3.3e-40 138.0 0.0 4.2e-40 137.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|344211232|ref|YP_004795552.1| - 6.1e-20 71.3 0.0 6.5e-20 71.2 0.0 1.3 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|344211232|ref|YP_004795552.1| - 1.1e-06 28.5 0.2 1.7e-06 27.8 0.2 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain HicB PF05534.12 gi|344211232|ref|YP_004795552.1| - 0.12 12.2 0.2 5.2 7.0 0.0 2.8 3 0 0 3 3 3 0 HicB family TFX_C PF14601.6 gi|344211233|ref|YP_004795553.1| - 2.7e-27 94.5 0.1 4.2e-27 93.9 0.1 1.3 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|344211233|ref|YP_004795553.1| - 1.1e-06 28.0 0.7 1.8e-06 27.4 0.7 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|344211233|ref|YP_004795553.1| - 0.0051 17.1 0.4 0.011 16.1 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|344211233|ref|YP_004795553.1| - 0.012 15.7 0.1 0.091 12.8 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|344211233|ref|YP_004795553.1| - 0.027 14.0 0.2 0.044 13.3 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|344211233|ref|YP_004795553.1| - 0.033 13.8 0.1 0.052 13.2 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|344211233|ref|YP_004795553.1| - 0.035 14.0 0.1 0.076 12.9 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_3 PF01381.22 gi|344211233|ref|YP_004795553.1| - 0.049 13.7 0.1 0.094 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix Aldedh PF00171.22 gi|344211235|ref|YP_004795555.1| - 3.2e-176 586.4 0.0 3.6e-176 586.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|344211235|ref|YP_004795555.1| - 0.19 11.1 0.0 0.35 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) Bactofilin PF04519.13 gi|344211236|ref|YP_004795556.1| - 4.2e-18 65.4 27.1 1.3e-11 44.6 4.8 2.8 1 1 2 3 3 3 2 Polymer-forming cytoskeletal THDPS_N_2 PF14805.6 gi|344211237|ref|YP_004795557.1| - 5.1e-23 81.1 0.9 8.1e-23 80.4 0.9 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|344211237|ref|YP_004795557.1| - 1.4e-11 43.6 4.4 0.00012 21.7 0.8 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344211237|ref|YP_004795557.1| - 0.00013 21.7 10.5 0.0016 18.1 0.7 3.4 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|344211238|ref|YP_004795558.1| - 8.4e-35 119.4 0.0 1.4e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|344211238|ref|YP_004795558.1| - 6.7e-23 81.1 1.7 3e-22 79.0 2.5 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|344211238|ref|YP_004795558.1| - 6.8e-05 23.1 0.4 0.00016 22.0 0.4 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain CoA_binding PF02629.19 gi|344211238|ref|YP_004795558.1| - 0.0011 19.7 3.9 0.0019 18.8 3.9 1.4 1 0 0 1 1 1 1 CoA binding domain Peripla_BP_6 PF13458.6 gi|344211238|ref|YP_004795558.1| - 0.012 15.3 2.0 0.016 14.9 2.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein NAD_binding_3 PF03447.16 gi|344211238|ref|YP_004795558.1| - 0.016 15.8 1.0 0.031 14.9 1.0 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|344211238|ref|YP_004795558.1| - 0.16 11.0 1.9 0.44 9.6 1.3 1.8 1 1 1 2 2 2 0 RmlD substrate binding domain DHDPS PF00701.22 gi|344211239|ref|YP_004795559.1| - 3.4e-92 308.2 0.0 3.9e-92 308.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|344211239|ref|YP_004795559.1| - 0.0087 15.4 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG CBM_2 PF00553.19 gi|344211240|ref|YP_004795560.1| - 0.038 14.3 0.0 0.16 12.3 0.0 2.0 2 1 0 2 2 2 0 Cellulose binding domain NYN PF01936.18 gi|344211241|ref|YP_004795561.1| - 1.6e-37 129.3 0.1 1.9e-37 129.0 0.1 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.19 gi|344211241|ref|YP_004795561.1| - 0.028 12.9 0.1 0.037 12.5 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Clathrin PF00637.20 gi|344211241|ref|YP_004795561.1| - 0.033 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS TGT_C2 PF14810.6 gi|344211243|ref|YP_004795563.1| - 2.4e-21 75.7 0.4 4.2e-21 74.8 0.4 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|344211243|ref|YP_004795563.1| - 8.4e-13 48.1 0.0 1.1e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 PUA domain DUF3244 PF11589.8 gi|344211244|ref|YP_004795564.1| - 0.011 15.8 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3244) DUF4981 PF16353.5 gi|344211244|ref|YP_004795564.1| - 0.22 12.0 0.7 1.7 9.2 0.1 2.4 2 1 1 3 3 3 0 Domain of unknown function(DUF4981) Big_9 PF17963.1 gi|344211244|ref|YP_004795564.1| - 0.33 11.7 8.3 0.55 11.0 8.3 1.4 1 0 0 1 1 1 0 Bacterial Ig domain Big_3_5 PF16640.5 gi|344211244|ref|YP_004795564.1| - 0.7 10.1 8.9 0.065 13.4 1.9 2.1 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Mem_trans PF03547.18 gi|344211245|ref|YP_004795565.1| - 6.7e-26 90.6 23.3 2.5e-13 49.2 3.8 2.0 1 1 1 2 2 2 2 Membrane transport protein TMEM220 PF15071.6 gi|344211245|ref|YP_004795565.1| - 0.18 12.6 0.0 0.18 12.6 0.0 2.9 3 2 1 4 4 4 0 Transmembrane family 220, helix NAC PF01849.18 gi|344211246|ref|YP_004795566.1| - 3.1e-18 65.5 0.4 4.7e-18 64.9 0.4 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|344211246|ref|YP_004795566.1| - 0.00014 21.6 0.4 0.00028 20.7 0.4 1.5 1 0 0 1 1 1 1 UBA-like domain UBA PF00627.31 gi|344211246|ref|YP_004795566.1| - 0.0058 16.5 1.1 0.0058 16.5 1.1 2.1 3 0 0 3 3 3 1 UBA/TS-N domain CUE PF02845.16 gi|344211246|ref|YP_004795566.1| - 0.062 13.0 0.2 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 CUE domain GCD14 PF08704.10 gi|344211247|ref|YP_004795567.1| - 9e-12 45.2 0.0 2.5e-08 33.9 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|344211247|ref|YP_004795567.1| - 3.9e-07 30.0 0.0 5.1e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344211247|ref|YP_004795567.1| - 8.6e-07 29.6 0.1 1.4e-06 28.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344211247|ref|YP_004795567.1| - 9.7e-07 28.7 0.1 1.3e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|344211247|ref|YP_004795567.1| - 2.8e-06 27.0 0.2 3.4e-06 26.7 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|344211247|ref|YP_004795567.1| - 7e-06 26.6 0.1 1.2e-05 25.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344211247|ref|YP_004795567.1| - 2.4e-05 24.2 0.0 2.8e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|344211247|ref|YP_004795567.1| - 5.2e-05 22.5 0.0 7.4e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.6 gi|344211247|ref|YP_004795567.1| - 8.3e-05 23.6 0.1 0.00013 22.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344211247|ref|YP_004795567.1| - 9e-05 22.1 0.1 0.00018 21.1 0.2 1.4 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_3 PF01596.17 gi|344211247|ref|YP_004795567.1| - 0.00051 19.3 0.0 0.0007 18.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|344211247|ref|YP_004795567.1| - 0.0018 17.6 0.0 0.0024 17.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|344211247|ref|YP_004795567.1| - 0.029 14.3 0.1 0.047 13.6 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|344211247|ref|YP_004795567.1| - 0.053 13.1 0.0 0.063 12.9 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|344211247|ref|YP_004795567.1| - 0.1 13.4 0.0 0.16 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF726 PF05277.12 gi|344211247|ref|YP_004795567.1| - 0.17 10.8 0.1 0.23 10.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) TFIIS_C PF01096.18 gi|344211251|ref|YP_004795571.1| - 8.8e-18 63.9 9.6 1.9e-17 62.8 5.6 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|344211251|ref|YP_004795571.1| - 9.8e-07 28.7 2.7 5.8e-05 23.0 0.8 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|344211251|ref|YP_004795571.1| - 1.7e-05 24.2 3.8 0.00026 20.5 0.4 2.5 2 0 0 2 2 2 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|344211251|ref|YP_004795571.1| - 0.0021 18.0 4.7 0.35 10.9 1.3 2.8 2 1 0 2 2 2 1 PhnA Zinc-Ribbon DUF3797 PF12677.7 gi|344211251|ref|YP_004795571.1| - 0.0028 17.5 1.4 0.095 12.6 0.6 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF3797) DUF2387 PF09526.10 gi|344211251|ref|YP_004795571.1| - 0.0031 17.6 8.0 0.036 14.2 1.6 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.6 gi|344211251|ref|YP_004795571.1| - 0.007 16.3 5.4 1.5 8.8 0.1 2.8 2 1 0 2 2 2 2 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|344211251|ref|YP_004795571.1| - 0.014 15.3 7.9 0.3 11.1 3.5 2.5 2 1 0 2 2 2 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|344211251|ref|YP_004795571.1| - 0.024 15.0 1.8 0.043 14.1 0.4 1.8 2 0 0 2 2 2 0 zinc-finger-containing domain FdhE PF04216.12 gi|344211251|ref|YP_004795571.1| - 0.025 14.5 0.9 0.033 14.1 0.1 1.5 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-RING_4 PF14570.6 gi|344211251|ref|YP_004795571.1| - 0.031 14.1 3.6 6.9 6.5 0.1 3.1 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain DUF4428 PF14471.6 gi|344211251|ref|YP_004795571.1| - 0.034 14.1 1.8 0.11 12.4 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) TerY_C PF15616.6 gi|344211251|ref|YP_004795571.1| - 0.039 14.1 3.0 0.14 12.3 0.3 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain RNA_POL_M_15KD PF02150.16 gi|344211251|ref|YP_004795571.1| - 0.053 13.4 11.0 0.19 11.6 0.2 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit DUF2752 PF10825.8 gi|344211251|ref|YP_004795571.1| - 0.055 13.5 1.0 0.073 13.1 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2752) zf_C2HC_14 PF18574.1 gi|344211251|ref|YP_004795571.1| - 0.11 12.3 1.8 3.5 7.5 0.1 2.3 2 0 0 2 2 2 0 C2HC Zing finger domain zf-ZPR1 PF03367.13 gi|344211251|ref|YP_004795571.1| - 0.12 12.2 3.8 0.34 10.8 0.5 2.0 2 0 0 2 2 2 0 ZPR1 zinc-finger domain zf-piccolo PF05715.13 gi|344211251|ref|YP_004795571.1| - 0.22 11.7 5.6 4.5 7.5 0.1 2.7 2 1 0 2 2 2 0 Piccolo Zn-finger DNA_RNApol_7kD PF03604.13 gi|344211251|ref|YP_004795571.1| - 0.38 10.5 4.9 8.7 6.1 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Zn_ribbon_SprT PF17283.2 gi|344211251|ref|YP_004795571.1| - 0.4 10.6 6.4 5.6 7.0 0.2 2.8 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|344211251|ref|YP_004795571.1| - 0.42 10.1 7.8 1.9 8.0 0.6 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|344211251|ref|YP_004795571.1| - 0.43 10.5 8.6 0.87 9.6 4.9 2.7 2 1 1 3 3 3 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|344211251|ref|YP_004795571.1| - 0.43 10.3 9.8 0.56 9.9 0.4 3.2 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Ribosomal_S27 PF01599.19 gi|344211251|ref|YP_004795571.1| - 0.6 10.3 0.2 0.6 10.3 0.2 2.5 3 0 0 3 3 2 0 Ribosomal protein S27a Rubredoxin PF00301.20 gi|344211251|ref|YP_004795571.1| - 0.71 9.9 6.3 9.1 6.4 0.2 3.1 3 0 0 3 3 3 0 Rubredoxin zf-ISL3 PF14690.6 gi|344211251|ref|YP_004795571.1| - 1.6 9.5 6.1 34 5.2 3.5 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.23 gi|344211251|ref|YP_004795571.1| - 1.6 9.0 3.7 11 6.4 0.1 2.5 3 0 0 3 3 2 0 Ribosomal L32p protein family HalOD2 PF18547.1 gi|344211251|ref|YP_004795571.1| - 2.1 8.3 8.3 20 5.2 0.1 3.2 3 0 0 3 3 3 0 Halobacterial output domain 2 zinc_ribbon_2 PF13240.6 gi|344211251|ref|YP_004795571.1| - 2.8 7.8 10.8 2 8.3 1.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|344211251|ref|YP_004795571.1| - 2.9 7.7 12.3 1.4 8.7 0.6 3.1 3 0 0 3 3 3 0 Rubredoxin metal binding domain DZR PF12773.7 gi|344211251|ref|YP_004795571.1| - 3.2 7.9 9.5 6.3 6.9 3.6 2.5 1 1 1 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|344211251|ref|YP_004795571.1| - 4.2 7.2 6.4 30 4.5 0.1 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain DUF4379 PF14311.6 gi|344211251|ref|YP_004795571.1| - 4.6 7.7 10.9 2.4 8.6 0.7 3.1 2 1 2 4 4 4 0 Probable Zinc-ribbon domain DUF2072 PF09845.9 gi|344211251|ref|YP_004795571.1| - 7.7 6.8 8.7 20 5.4 2.2 2.7 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-RING_7 PF02591.15 gi|344211251|ref|YP_004795571.1| - 9.1 6.6 11.2 4.4 7.6 0.8 3.1 3 1 0 3 3 3 0 C4-type zinc ribbon domain Creatininase PF02633.14 gi|344211256|ref|YP_004795576.1| - 2.6e-66 223.5 0.1 3e-66 223.3 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Alpha-amylase PF00128.24 gi|344211257|ref|YP_004795577.1| - 1.5e-114 383.1 2.3 2e-114 382.6 2.3 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|344211257|ref|YP_004795577.1| - 5.7e-07 29.6 0.0 1.3e-06 28.4 0.0 1.7 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|344211257|ref|YP_004795577.1| - 0.0011 18.1 0.0 0.0017 17.6 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain DUF3459 PF11941.8 gi|344211257|ref|YP_004795577.1| - 0.082 13.2 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) Peptidase_M24 PF00557.24 gi|344211258|ref|YP_004795578.1| - 4.2e-10 39.7 0.3 6.3e-10 39.1 0.3 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|344211258|ref|YP_004795578.1| - 0.048 14.3 0.1 0.42 11.3 0.1 2.3 1 1 0 1 1 1 0 Creatinase/Prolidase N-terminal domain IU_nuc_hydro PF01156.19 gi|344211259|ref|YP_004795579.1| - 7e-74 249.1 0.1 8e-74 248.9 0.1 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase OCD_Mu_crystall PF02423.15 gi|344211260|ref|YP_004795580.1| - 4.1e-97 325.0 0.4 4.6e-97 324.8 0.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family S1 PF00575.23 gi|344211261|ref|YP_004795581.1| - 0.00056 20.2 0.0 0.43 11.0 0.1 2.1 1 1 1 2 2 2 2 S1 RNA binding domain TRAM PF01938.20 gi|344211261|ref|YP_004795581.1| - 0.0059 16.6 0.1 0.007 16.3 0.1 1.1 1 0 0 1 1 1 1 TRAM domain Na_H_antiporter PF03553.14 gi|344211262|ref|YP_004795582.1| - 3.8e-32 111.7 47.9 6.2e-20 71.6 19.2 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.18 gi|344211263|ref|YP_004795583.1| - 5.8e-26 90.8 0.0 1.2e-25 89.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344211263|ref|YP_004795583.1| - 5.8e-08 32.4 0.8 4.2e-07 29.7 0.3 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344211263|ref|YP_004795583.1| - 1.7e-07 31.0 0.2 3.3e-07 30.1 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|344211263|ref|YP_004795583.1| - 2.5e-06 26.9 0.1 5e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344211263|ref|YP_004795583.1| - 1.8e-05 24.5 0.6 0.0007 19.4 0.1 3.0 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.7 gi|344211263|ref|YP_004795583.1| - 7.1e-05 22.8 0.2 0.00017 21.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|344211263|ref|YP_004795583.1| - 0.00011 22.1 0.2 0.0002 21.2 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344211263|ref|YP_004795583.1| - 0.00054 19.9 0.1 0.0053 16.7 0.1 2.6 3 0 0 3 3 3 1 HTH domain HTH_AsnC-type PF13404.6 gi|344211263|ref|YP_004795583.1| - 0.00071 19.4 0.3 0.0098 15.7 0.2 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_45 PF14947.6 gi|344211263|ref|YP_004795583.1| - 0.011 15.7 0.4 0.029 14.3 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|344211263|ref|YP_004795583.1| - 0.018 15.2 0.1 0.032 14.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|344211263|ref|YP_004795583.1| - 0.023 14.6 0.0 0.44 10.5 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|344211263|ref|YP_004795583.1| - 0.031 14.0 0.1 0.081 12.7 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|344211263|ref|YP_004795583.1| - 0.045 13.6 0.1 0.16 11.8 0.1 1.8 2 0 0 2 2 2 0 HTH DNA binding domain GerE PF00196.19 gi|344211263|ref|YP_004795583.1| - 0.048 13.2 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_27 PF13463.6 gi|344211263|ref|YP_004795583.1| - 0.052 14.0 0.3 0.17 12.4 0.3 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|344211263|ref|YP_004795583.1| - 0.064 13.5 0.1 0.15 12.3 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|344211264|ref|YP_004795584.1| - 6.5e-20 70.7 0.1 1.2e-19 69.8 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.7 gi|344211264|ref|YP_004795584.1| - 0.0083 16.2 0.0 0.023 14.8 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0122 PF04297.14 gi|344211264|ref|YP_004795584.1| - 0.017 15.3 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.12 gi|344211264|ref|YP_004795584.1| - 0.034 14.1 0.1 0.2 11.6 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_Tnp_1_2 PF13022.6 gi|344211264|ref|YP_004795584.1| - 0.038 14.1 0.0 0.088 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_24 PF13412.6 gi|344211264|ref|YP_004795584.1| - 0.053 13.1 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Coat_F PF07875.12 gi|344211264|ref|YP_004795584.1| - 0.061 13.5 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 Coat F domain Sigma70_r4_2 PF08281.12 gi|344211264|ref|YP_004795584.1| - 0.092 12.4 0.1 0.98 9.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 DUF1611 PF07755.11 gi|344211265|ref|YP_004795585.1| - 7.5e-60 201.6 0.4 7.5e-60 201.6 0.4 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|344211265|ref|YP_004795585.1| - 3.5e-29 100.9 0.0 8.4e-29 99.7 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|344211266|ref|YP_004795586.1| - 1.7e-40 138.9 3.6 2.8e-40 138.3 3.6 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344211266|ref|YP_004795586.1| - 2.4e-14 53.6 0.3 1.1e-13 51.5 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 4HFCP_synth PF04476.13 gi|344211266|ref|YP_004795586.1| - 0.0088 15.8 1.3 0.59 9.8 0.1 2.3 2 0 0 2 2 2 2 4-HFC-P synthase Bactofilin PF04519.13 gi|344211267|ref|YP_004795587.1| - 5.8e-13 49.0 8.8 6.3e-10 39.2 0.4 3.4 2 1 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|344211267|ref|YP_004795587.1| - 2.4e-05 23.9 15.0 0.0014 18.2 0.1 6.3 4 2 2 6 6 6 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344211267|ref|YP_004795587.1| - 0.042 13.6 10.1 4.5 7.1 2.7 4.4 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase FapA PF03961.13 gi|344211267|ref|YP_004795587.1| - 0.06 11.9 1.8 0.81 8.2 1.3 2.1 2 0 0 2 2 2 0 Flagellar Assembly Protein A LppX_LprAFG PF07161.13 gi|344211268|ref|YP_004795588.1| - 0.0022 17.9 1.5 0.0031 17.4 0.7 1.5 1 1 0 1 1 1 1 LppX_LprAFG lipoprotein DUF4440 PF14534.6 gi|344211268|ref|YP_004795588.1| - 0.47 10.9 5.0 0.23 11.8 0.4 2.5 2 2 0 2 2 2 0 Domain of unknown function (DUF4440) Glyco_transf_20 PF00982.21 gi|344211269|ref|YP_004795589.1| - 2.1e-114 382.8 0.0 2.5e-114 382.6 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glycos_transf_1 PF00534.20 gi|344211269|ref|YP_004795589.1| - 0.0018 17.8 0.0 1.2 8.6 0.0 2.5 2 1 0 2 2 2 2 Glycosyl transferases group 1 AAA_lid_2 PF17863.1 gi|344211269|ref|YP_004795589.1| - 0.007 16.2 0.4 0.007 16.2 0.4 2.1 2 0 0 2 2 2 1 AAA lid domain Glyco_trans_1_4 PF13692.6 gi|344211269|ref|YP_004795589.1| - 0.017 15.5 0.0 0.036 14.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 MAF_flag10 PF01973.18 gi|344211270|ref|YP_004795590.1| - 1e-16 61.1 0.0 1.4e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Bac_luciferase PF00296.20 gi|344211271|ref|YP_004795591.1| - 7.2e-83 278.6 0.7 8.8e-83 278.3 0.7 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PALP PF00291.25 gi|344211271|ref|YP_004795591.1| - 0.043 13.2 0.0 0.071 12.5 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme HAD_2 PF13419.6 gi|344211272|ref|YP_004795592.1| - 6.1e-13 49.2 0.0 9.2e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344211272|ref|YP_004795592.1| - 7.1e-10 39.5 0.5 2.4e-09 37.8 0.5 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344211272|ref|YP_004795592.1| - 0.0045 17.0 0.2 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like TrkA_N PF02254.18 gi|344211273|ref|YP_004795593.1| - 4.1e-26 91.5 0.2 7.1e-26 90.7 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|344211273|ref|YP_004795593.1| - 3.9e-08 33.0 1.4 7.3e-08 32.1 0.4 1.9 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|344211273|ref|YP_004795593.1| - 2.3e-07 31.2 0.0 3.8e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|344211273|ref|YP_004795593.1| - 6.9e-05 23.4 0.5 0.0013 19.2 0.0 2.5 2 1 1 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|344211273|ref|YP_004795593.1| - 0.00014 21.9 0.1 0.00019 21.4 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|344211273|ref|YP_004795593.1| - 0.00032 20.2 0.0 0.00045 19.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.14 gi|344211273|ref|YP_004795593.1| - 0.00035 19.9 0.0 0.00047 19.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|344211273|ref|YP_004795593.1| - 0.001 18.7 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|344211273|ref|YP_004795593.1| - 0.0031 17.4 0.1 0.0047 16.8 0.1 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|344211273|ref|YP_004795593.1| - 0.004 16.8 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|344211273|ref|YP_004795593.1| - 0.0046 17.4 0.1 0.011 16.2 0.1 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|344211273|ref|YP_004795593.1| - 0.0093 14.9 0.1 0.039 12.8 0.0 1.8 1 1 1 2 2 2 1 Tryptophan halogenase Sacchrp_dh_NADP PF03435.18 gi|344211273|ref|YP_004795593.1| - 0.014 15.7 0.1 0.025 14.8 0.1 1.5 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain adh_short_C2 PF13561.6 gi|344211273|ref|YP_004795593.1| - 0.017 14.7 0.2 0.041 13.4 0.2 1.6 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase LpxI_N PF17930.1 gi|344211273|ref|YP_004795593.1| - 0.03 14.2 0.0 0.063 13.2 0.0 1.5 1 1 0 1 1 1 0 LpxI N-terminal domain DAO PF01266.24 gi|344211273|ref|YP_004795593.1| - 0.034 13.7 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase adh_short PF00106.25 gi|344211273|ref|YP_004795593.1| - 0.036 13.5 0.0 0.055 12.9 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Pyr_redox PF00070.27 gi|344211273|ref|YP_004795593.1| - 0.051 14.1 0.1 0.089 13.4 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|344211273|ref|YP_004795593.1| - 0.06 13.4 0.0 0.095 12.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|344211273|ref|YP_004795593.1| - 0.16 12.2 0.0 0.21 11.7 0.0 1.4 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AA_permease_2 PF13520.6 gi|344211274|ref|YP_004795594.1| - 6.3e-50 170.3 40.7 7.7e-50 170.0 40.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|344211274|ref|YP_004795594.1| - 1.7e-41 142.3 37.9 2.3e-41 141.9 37.9 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|344211274|ref|YP_004795594.1| - 2.7e-05 23.2 16.1 0.00019 20.4 3.5 2.5 3 0 0 3 3 3 2 Spore germination protein TrkA_N PF02254.18 gi|344211275|ref|YP_004795595.1| - 8.4e-25 87.3 0.9 1.4e-24 86.6 0.9 1.4 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox PF00070.27 gi|344211275|ref|YP_004795595.1| - 1.4e-07 31.9 0.1 2.7e-07 31.0 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.6 gi|344211275|ref|YP_004795595.1| - 1.6e-07 31.4 0.4 2.6e-07 30.7 0.4 1.4 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_C PF02080.21 gi|344211275|ref|YP_004795595.1| - 5.7e-07 29.3 1.7 1e-06 28.5 0.1 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|344211275|ref|YP_004795595.1| - 8.3e-06 26.2 0.1 1.7e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|344211275|ref|YP_004795595.1| - 4.5e-05 22.8 0.0 8.4e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|344211275|ref|YP_004795595.1| - 0.0002 20.7 0.1 0.00047 19.5 0.1 1.5 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344211275|ref|YP_004795595.1| - 0.00056 20.1 0.3 0.0089 16.2 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|344211275|ref|YP_004795595.1| - 0.0013 18.4 0.2 0.0025 17.4 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|344211275|ref|YP_004795595.1| - 0.0013 18.4 0.9 0.002 17.8 0.9 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase NmrA PF05368.13 gi|344211275|ref|YP_004795595.1| - 0.0016 18.0 0.2 0.0024 17.5 0.2 1.2 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.18 gi|344211275|ref|YP_004795595.1| - 0.0026 17.7 0.1 0.0048 16.8 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344211275|ref|YP_004795595.1| - 0.0066 16.7 0.4 0.011 16.0 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|344211275|ref|YP_004795595.1| - 0.0071 15.6 0.4 0.073 12.3 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Epimerase PF01370.21 gi|344211275|ref|YP_004795595.1| - 0.011 15.2 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.6 gi|344211275|ref|YP_004795595.1| - 0.013 15.1 0.3 0.033 13.7 0.2 1.7 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase HI0933_like PF03486.14 gi|344211275|ref|YP_004795595.1| - 0.016 13.9 0.1 0.024 13.4 0.1 1.2 1 0 0 1 1 1 0 HI0933-like protein XdhC_C PF13478.6 gi|344211275|ref|YP_004795595.1| - 0.027 15.0 0.3 0.18 12.3 0.1 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain Trp_halogenase PF04820.14 gi|344211275|ref|YP_004795595.1| - 0.031 13.1 0.1 0.039 12.8 0.1 1.1 1 0 0 1 1 1 0 Tryptophan halogenase LpxI_N PF17930.1 gi|344211275|ref|YP_004795595.1| - 0.039 13.9 0.0 0.096 12.6 0.0 1.6 1 0 0 1 1 1 0 LpxI N-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|344211275|ref|YP_004795595.1| - 0.039 13.9 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_2 PF00890.24 gi|344211275|ref|YP_004795595.1| - 0.043 12.9 0.6 0.039 13.0 0.6 1.2 1 0 0 1 1 1 0 FAD binding domain Glyco_trans_4_4 PF13579.6 gi|344211275|ref|YP_004795595.1| - 0.057 13.9 0.6 0.84 10.1 0.6 2.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain AlaDh_PNT_C PF01262.21 gi|344211275|ref|YP_004795595.1| - 0.065 12.5 0.4 0.099 11.9 0.4 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|344211275|ref|YP_004795595.1| - 0.071 12.8 0.1 0.15 11.7 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Glyco_transf_4 PF13439.6 gi|344211275|ref|YP_004795595.1| - 0.086 12.8 0.2 0.32 11.0 0.1 2.2 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Pterin_bind PF00809.22 gi|344211276|ref|YP_004795596.1| - 2.5e-35 122.3 0.0 4.7e-35 121.4 0.0 1.4 1 1 0 1 1 1 1 Pterin binding enzyme HATPase_c PF02518.26 gi|344211277|ref|YP_004795597.1| - 6e-15 55.7 0.0 1.1e-14 54.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211277|ref|YP_004795597.1| - 2.6e-12 46.6 0.1 9.3e-12 44.8 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|344211277|ref|YP_004795597.1| - 1.6e-09 38.2 0.6 3.3e-09 37.2 0.1 1.8 2 1 1 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|344211277|ref|YP_004795597.1| - 7.1e-09 36.1 0.0 1.2e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 GAF domain MRG PF05712.13 gi|344211277|ref|YP_004795597.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 MRG APH PF01636.23 gi|344211278|ref|YP_004795598.1| - 3.7e-24 86.0 2.2 4.1e-24 85.8 1.5 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|344211278|ref|YP_004795598.1| - 1.4e-07 31.1 0.0 3.9e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 Fructosamine kinase DUF1679 PF07914.11 gi|344211278|ref|YP_004795598.1| - 0.0067 15.3 0.0 0.011 14.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) PfkB PF00294.24 gi|344211279|ref|YP_004795599.1| - 4.7e-44 150.9 3.4 1.1e-43 149.6 3.4 1.5 1 1 0 1 1 1 1 pfkB family carbohydrate kinase CARDB PF07705.11 gi|344211280|ref|YP_004795600.1| - 2.2e-05 24.6 18.7 0.035 14.3 1.4 4.6 4 2 0 4 4 4 3 CARDB Transglut_C PF00927.22 gi|344211280|ref|YP_004795600.1| - 0.0001 22.4 0.1 0.092 12.9 0.0 3.1 3 0 0 3 3 3 2 Transglutaminase family, C-terminal ig like domain Abhydrolase_8 PF06259.12 gi|344211280|ref|YP_004795600.1| - 0.15 11.7 4.2 1.9 8.1 1.9 3.0 2 1 2 4 4 4 0 Alpha/beta hydrolase MG4 PF17789.1 gi|344211280|ref|YP_004795600.1| - 1.2 9.4 8.4 8.5 6.6 0.3 3.5 3 1 0 3 3 3 0 Macroglobulin domain MG4 NPCBM_assoc PF10633.9 gi|344211280|ref|YP_004795600.1| - 2 8.7 15.6 5.2 7.4 0.1 4.9 5 2 1 6 6 6 0 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.27 gi|344211281|ref|YP_004795601.1| - 3e-34 118.5 0.0 3.8e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211281|ref|YP_004795601.1| - 1.4e-06 28.4 0.2 0.021 14.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|344211281|ref|YP_004795601.1| - 0.00018 21.8 0.6 0.0018 18.6 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|344211281|ref|YP_004795601.1| - 0.00053 19.6 0.2 0.15 11.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|344211281|ref|YP_004795601.1| - 0.0018 18.0 0.1 0.0038 16.9 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344211281|ref|YP_004795601.1| - 0.0021 18.5 0.4 0.007 16.8 0.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344211281|ref|YP_004795601.1| - 0.0021 18.0 0.2 0.0062 16.5 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|344211281|ref|YP_004795601.1| - 0.0046 16.4 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|344211281|ref|YP_004795601.1| - 0.0098 16.4 0.1 0.021 15.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|344211281|ref|YP_004795601.1| - 0.022 13.8 0.1 0.032 13.3 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|344211281|ref|YP_004795601.1| - 0.026 14.3 0.2 0.049 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|344211281|ref|YP_004795601.1| - 0.044 13.9 0.4 0.14 12.3 0.4 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|344211281|ref|YP_004795601.1| - 0.099 12.2 0.3 0.19 11.3 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|344211281|ref|YP_004795601.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|344211281|ref|YP_004795601.1| - 0.12 12.6 0.3 0.24 11.6 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344211281|ref|YP_004795601.1| - 0.15 12.7 0.4 0.31 11.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344211281|ref|YP_004795601.1| - 0.15 12.2 0.4 1.2 9.3 0.1 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase PhoH PF02562.16 gi|344211281|ref|YP_004795601.1| - 0.19 11.1 0.7 0.8 9.1 0.1 2.0 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.22 gi|344211281|ref|YP_004795601.1| - 0.22 10.7 0.0 0.37 9.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|344211281|ref|YP_004795601.1| - 0.24 11.8 0.1 3 8.3 0.0 2.3 2 1 0 2 2 2 0 RNA helicase MacB_PCD PF12704.7 gi|344211282|ref|YP_004795602.1| - 2.4e-21 77.0 1.3 2.4e-21 77.0 1.3 2.2 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|344211282|ref|YP_004795602.1| - 1.3e-13 51.2 6.1 2.5e-12 47.1 0.3 3.1 3 0 0 3 3 3 2 FtsX-like permease family Meth_synt_2 PF01717.18 gi|344211284|ref|YP_004795604.1| - 1e-58 199.2 0.0 1.5e-58 198.7 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|344211284|ref|YP_004795604.1| - 1.4e-12 47.8 0.1 2.1e-12 47.2 0.1 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|344211284|ref|YP_004795604.1| - 1.5e-07 30.9 0.0 2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Corona_6B_7B PF03262.13 gi|344211284|ref|YP_004795604.1| - 0.063 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Coronavirus 6B/7B protein Meth_synt_1 PF08267.12 gi|344211285|ref|YP_004795605.1| - 8.5e-15 55.1 0.0 2e-13 50.6 0.0 2.1 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|344211285|ref|YP_004795605.1| - 1e-12 48.0 0.4 1.3e-12 47.7 0.4 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain NAD_binding_5 PF07994.12 gi|344211285|ref|YP_004795605.1| - 0.0098 15.3 0.2 0.017 14.6 0.1 1.4 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase Methyltransf_11 PF08241.12 gi|344211286|ref|YP_004795606.1| - 5.4e-09 36.6 0.0 6.9e-08 33.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|344211286|ref|YP_004795606.1| - 2e-08 34.0 0.0 1.4e-07 31.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|344211286|ref|YP_004795606.1| - 2.1e-08 34.7 0.0 9.3e-08 32.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344211286|ref|YP_004795606.1| - 3.6e-07 30.1 0.0 6e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344211286|ref|YP_004795606.1| - 2e-06 27.7 0.0 3.3e-06 27.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|344211286|ref|YP_004795606.1| - 3.6e-06 26.7 0.0 5.4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|344211286|ref|YP_004795606.1| - 5.5e-06 26.0 0.5 8.3e-06 25.4 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|344211286|ref|YP_004795606.1| - 0.00014 21.6 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.7 gi|344211286|ref|YP_004795606.1| - 0.00066 19.6 0.0 0.0095 15.9 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211286|ref|YP_004795606.1| - 0.00078 20.1 0.0 0.0025 18.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|344211286|ref|YP_004795606.1| - 0.0014 18.4 0.0 0.0058 16.4 0.0 1.8 2 0 0 2 2 2 1 DNA methylase Methyltransf_32 PF13679.6 gi|344211286|ref|YP_004795606.1| - 0.0028 17.7 0.0 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|344211286|ref|YP_004795606.1| - 0.0033 16.8 0.0 0.0068 15.7 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|344211286|ref|YP_004795606.1| - 0.007 16.0 0.1 0.023 14.4 0.0 1.8 2 1 1 3 3 3 1 Thiopurine S-methyltransferase (TPMT) TrkA_N PF02254.18 gi|344211286|ref|YP_004795606.1| - 0.023 14.9 0.0 0.064 13.5 0.0 1.7 2 0 0 2 2 2 0 TrkA-N domain FtsJ PF01728.19 gi|344211286|ref|YP_004795606.1| - 0.061 13.4 0.0 0.11 12.6 0.0 1.3 2 0 0 2 2 2 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|344211286|ref|YP_004795606.1| - 0.15 11.0 0.0 0.25 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) UPF0146 PF03686.13 gi|344211286|ref|YP_004795606.1| - 0.17 11.8 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) RrnaAD PF00398.20 gi|344211287|ref|YP_004795607.1| - 2.7e-45 154.5 0.0 3e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|344211287|ref|YP_004795607.1| - 8e-06 26.5 0.0 1.7e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344211287|ref|YP_004795607.1| - 0.0012 19.4 0.0 0.0027 18.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211287|ref|YP_004795607.1| - 0.0021 18.7 0.0 0.0057 17.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|344211287|ref|YP_004795607.1| - 0.046 13.3 0.0 0.097 12.3 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) Glyco_hydro_4C PF11975.8 gi|344211287|ref|YP_004795607.1| - 0.055 13.6 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain PRMT5 PF05185.16 gi|344211287|ref|YP_004795607.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_PK PF05891.12 gi|344211287|ref|YP_004795607.1| - 0.25 10.8 0.0 0.39 10.2 0.0 1.3 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase DUF655 PF04919.12 gi|344211288|ref|YP_004795608.1| - 1.8e-59 200.7 0.2 2.2e-59 200.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|344211288|ref|YP_004795608.1| - 0.001 19.3 0.0 0.0052 17.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|344211288|ref|YP_004795608.1| - 0.0012 19.1 0.1 0.0034 17.6 0.1 1.7 1 1 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|344211289|ref|YP_004795609.1| - 5.7e-13 49.3 3.3 7.1e-13 49.0 3.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Gluconate_2-dh3 PF13618.6 gi|344211289|ref|YP_004795609.1| - 0.12 12.6 2.3 2 8.7 0.1 2.6 1 1 2 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 Ribosomal_L21e PF01157.18 gi|344211290|ref|YP_004795610.1| - 9.6e-30 102.4 0.0 1e-29 102.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e EF1_GNE PF00736.19 gi|344211291|ref|YP_004795611.1| - 9.7e-19 67.3 0.0 1.1e-18 67.2 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|344211292|ref|YP_004795612.1| - 5.6e-07 29.4 3.9 5.6e-07 29.4 3.9 2.4 3 0 0 3 3 2 1 Domain of unknown function (DUF1610) zf-ACC PF17848.1 gi|344211292|ref|YP_004795612.1| - 0.00032 20.7 10.9 0.0099 15.9 0.5 3.5 3 1 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain C1_2 PF03107.16 gi|344211292|ref|YP_004795612.1| - 0.0006 20.1 10.8 0.037 14.4 3.5 2.1 1 1 1 2 2 2 2 C1 domain zf-Mss51 PF13824.6 gi|344211292|ref|YP_004795612.1| - 0.0016 18.5 11.6 1.3 9.2 5.7 3.0 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS91 PF14319.6 gi|344211292|ref|YP_004795612.1| - 0.0027 17.7 10.5 0.0041 17.1 10.5 1.3 1 1 0 1 1 1 1 Transposase zinc-binding domain Rhodanese_C PF12368.8 gi|344211292|ref|YP_004795612.1| - 0.0084 16.5 10.2 0.0092 16.3 10.2 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal zf-ribbon_3 PF13248.6 gi|344211292|ref|YP_004795612.1| - 0.012 15.0 13.6 0.75 9.3 0.2 3.5 4 0 0 4 4 4 0 zinc-ribbon domain C1_1 PF00130.22 gi|344211292|ref|YP_004795612.1| - 0.012 15.4 11.4 0.016 15.1 1.4 2.5 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|344211292|ref|YP_004795612.1| - 0.015 15.3 14.8 0.051 13.6 2.9 2.3 1 1 1 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|344211292|ref|YP_004795612.1| - 0.021 14.8 5.7 0.021 14.8 5.7 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|344211292|ref|YP_004795612.1| - 0.028 14.1 12.7 0.42 10.3 1.8 3.2 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.12 gi|344211292|ref|YP_004795612.1| - 0.028 14.9 13.1 0.47 11.0 7.7 2.1 1 1 1 2 2 2 0 CHY zinc finger HypA PF01155.19 gi|344211292|ref|YP_004795612.1| - 0.042 13.9 12.3 0.06 13.4 1.6 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|344211292|ref|YP_004795612.1| - 0.046 13.6 16.5 0.41 10.6 5.5 2.9 1 1 1 2 2 2 0 HIT zinc finger zinc-ribbons_6 PF07191.12 gi|344211292|ref|YP_004795612.1| - 0.054 13.5 12.6 0.69 9.9 12.6 2.0 1 1 0 1 1 1 0 zinc-ribbons HscB_4_cys PF18256.1 gi|344211292|ref|YP_004795612.1| - 0.056 13.3 1.2 0.056 13.3 1.2 2.9 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif zf-UBP PF02148.19 gi|344211292|ref|YP_004795612.1| - 0.086 13.2 0.7 0.086 13.2 0.7 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein NMD3 PF04981.13 gi|344211292|ref|YP_004795612.1| - 0.11 12.0 8.9 0.11 11.9 8.9 1.0 1 0 0 1 1 1 0 NMD3 family zf-MYND PF01753.18 gi|344211292|ref|YP_004795612.1| - 0.13 12.4 10.9 1.7 8.8 2.9 2.5 2 1 0 2 2 2 0 MYND finger Desulfoferrod_N PF06397.12 gi|344211292|ref|YP_004795612.1| - 0.16 11.6 15.7 5.1 6.8 0.5 4.0 1 1 3 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf_UBZ PF18439.1 gi|344211292|ref|YP_004795612.1| - 0.2 11.3 15.0 0.46 10.1 0.5 3.9 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_10 PF10058.9 gi|344211292|ref|YP_004795612.1| - 0.2 11.4 12.1 5.2 6.9 0.1 3.8 2 1 2 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|344211292|ref|YP_004795612.1| - 0.21 11.5 15.5 2.8 7.9 0.1 4.0 3 1 1 4 4 4 0 SprT-like zinc ribbon domain zf-UBR PF02207.20 gi|344211292|ref|YP_004795612.1| - 0.24 11.6 12.9 1.8 8.8 10.0 2.5 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) PolC_DP2 PF03833.13 gi|344211292|ref|YP_004795612.1| - 0.24 9.2 8.1 0.27 9.1 8.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-C2HC5 PF06221.13 gi|344211292|ref|YP_004795612.1| - 0.27 11.3 10.3 0.29 11.1 5.1 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C2H2 PF00096.26 gi|344211292|ref|YP_004795612.1| - 0.36 11.4 15.5 2.3 8.8 0.7 3.8 4 0 0 4 4 4 0 Zinc finger, C2H2 type NMDAR2_C PF10565.9 gi|344211292|ref|YP_004795612.1| - 0.42 9.4 8.6 0.46 9.3 8.6 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus UPF0547 PF10571.9 gi|344211292|ref|YP_004795612.1| - 0.53 10.4 15.0 1.4 9.0 0.4 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|344211292|ref|YP_004795612.1| - 0.72 9.7 15.9 2 8.2 4.3 3.6 2 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|344211292|ref|YP_004795612.1| - 0.83 9.8 18.5 11 6.2 13.1 3.7 1 1 2 3 3 3 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|344211292|ref|YP_004795612.1| - 0.97 9.3 10.4 12 5.7 0.2 3.8 4 0 0 4 4 4 0 zinc-finger C2H2-type zf-tcix PF14952.6 gi|344211292|ref|YP_004795612.1| - 1.1 9.0 20.1 1.3 8.7 0.8 3.5 1 1 2 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding FYVE_2 PF02318.16 gi|344211292|ref|YP_004795612.1| - 1.1 9.5 8.0 1.2 9.3 8.0 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-AN1 PF01428.16 gi|344211292|ref|YP_004795612.1| - 1.9 8.7 13.4 6.3 7.1 3.2 2.8 1 1 0 2 2 2 0 AN1-like Zinc finger Rubredoxin_2 PF18073.1 gi|344211292|ref|YP_004795612.1| - 2.6 7.8 18.5 2.8 7.8 4.2 3.8 2 2 0 2 2 2 0 Rubredoxin metal binding domain YhfH PF14149.6 gi|344211292|ref|YP_004795612.1| - 3.2 7.8 17.6 11 6.2 0.3 3.4 1 1 2 3 3 3 0 YhfH-like protein Jiv90 PF14901.6 gi|344211292|ref|YP_004795612.1| - 4.2 7.6 9.6 5.7 7.2 3.6 2.0 1 1 1 2 2 2 0 Cleavage inducing molecular chaperone Sgf11 PF08209.11 gi|344211292|ref|YP_004795612.1| - 4.2 7.0 15.9 0.5 10.0 0.7 3.8 1 1 3 4 4 4 0 Sgf11 (transcriptional regulation protein) Ribosomal_L37ae PF01780.19 gi|344211292|ref|YP_004795612.1| - 5.1 7.3 11.1 8.9 6.5 4.5 2.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-B_box PF00643.24 gi|344211292|ref|YP_004795612.1| - 6 7.1 10.5 1.1e+02 3.1 10.5 2.4 1 1 0 1 1 1 0 B-box zinc finger Zn_Tnp_IS1595 PF12760.7 gi|344211292|ref|YP_004795612.1| - 6.4 6.8 19.6 5.4e+02 0.7 19.6 3.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain NRDD PF13597.6 gi|344211292|ref|YP_004795612.1| - 7.1 5.3 10.9 2.7 6.7 0.9 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase TFIIS_C PF01096.18 gi|344211292|ref|YP_004795612.1| - 7.3 6.5 17.8 11 5.9 0.3 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.12 gi|344211292|ref|YP_004795612.1| - 8.4 6.4 13.0 1.6 8.8 0.2 3.4 2 1 2 4 4 4 0 PhnA Zinc-Ribbon DUF2391 PF09622.10 gi|344211293|ref|YP_004795613.1| - 0.00011 21.6 3.6 0.00015 21.2 3.6 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) 3HCDH PF00725.22 gi|344211294|ref|YP_004795614.1| - 1.1e-14 54.7 0.0 1.8e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 3HCDH_N PF02737.18 gi|344211294|ref|YP_004795614.1| - 4.3e-14 52.8 0.1 6.4e-14 52.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Alk_phosphatase PF00245.20 gi|344211294|ref|YP_004795614.1| - 0.05 12.6 0.3 0.066 12.2 0.3 1.1 1 0 0 1 1 1 0 Alkaline phosphatase AP_endonuc_2 PF01261.24 gi|344211295|ref|YP_004795615.1| - 5.7e-35 120.7 3.7 8.6e-35 120.1 3.7 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|344211295|ref|YP_004795615.1| - 3.7e-20 71.4 0.1 8.1e-20 70.3 0.1 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus Mut7-C PF01927.16 gi|344211295|ref|YP_004795615.1| - 0.095 12.8 0.0 13 5.9 0.0 3.0 3 0 0 3 3 3 0 Mut7-C RNAse domain DUF3122 PF11320.8 gi|344211295|ref|YP_004795615.1| - 0.1 12.6 0.0 0.39 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) TIR-like PF10137.9 gi|344211295|ref|YP_004795615.1| - 0.21 11.6 0.0 1.3 9.0 0.0 2.0 2 0 0 2 2 2 0 Predicted nucleotide-binding protein containing TIR-like domain AIM24 PF01987.17 gi|344211296|ref|YP_004795616.1| - 1.6e-55 188.0 0.0 1.8e-55 187.8 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 CBS PF00571.28 gi|344211297|ref|YP_004795617.1| - 1.7e-19 70.0 0.7 4.2e-10 39.9 0.2 2.2 2 0 0 2 2 2 2 CBS domain GFO_IDH_MocA PF01408.22 gi|344211298|ref|YP_004795618.1| - 8.6e-14 52.4 0.0 1.5e-13 51.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|344211298|ref|YP_004795618.1| - 1.7e-12 47.4 0.0 3.1e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|344211298|ref|YP_004795618.1| - 0.027 14.1 0.0 0.057 13.1 0.0 1.5 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain MMR_HSR1_C PF08438.10 gi|344211299|ref|YP_004795619.1| - 3.1e-30 105.0 0.0 5e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|344211299|ref|YP_004795619.1| - 1.7e-20 73.2 0.0 1.8e-19 69.9 0.0 2.5 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|344211299|ref|YP_004795619.1| - 5.3e-11 42.4 0.0 1.1e-10 41.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|344211299|ref|YP_004795619.1| - 1e-09 38.1 0.0 7.8e-08 32.0 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B Histidinol_dh PF00815.20 gi|344211301|ref|YP_004795621.1| - 2.3e-152 507.8 8.1 2.7e-152 507.5 8.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Fe-S_biosyn PF01521.20 gi|344211302|ref|YP_004795622.1| - 3.3e-17 62.7 0.0 3.9e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.12 gi|344211303|ref|YP_004795623.1| - 1.4e-21 76.5 0.6 1.6e-21 76.3 0.6 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.9 gi|344211304|ref|YP_004795624.1| - 2.2e-05 24.3 1.2 3.4e-05 23.7 1.2 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) YdjM PF04307.14 gi|344211306|ref|YP_004795626.1| - 1.6e-19 69.9 27.0 1.1e-17 63.9 27.0 2.8 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase TraX PF05857.11 gi|344211306|ref|YP_004795626.1| - 0.34 10.9 4.3 0.63 10.1 2.4 2.3 1 1 2 3 3 3 0 TraX protein MS_channel PF00924.18 gi|344211307|ref|YP_004795627.1| - 1.1e-12 47.9 2.7 1.1e-12 47.9 2.7 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|344211307|ref|YP_004795627.1| - 0.0083 16.1 2.0 0.0083 16.1 2.0 2.1 3 0 0 3 3 3 1 Conserved TM helix Zn-ribbon_8 PF09723.10 gi|344211309|ref|YP_004795629.1| - 0.058 13.5 0.3 0.092 12.9 0.3 1.2 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|344211309|ref|YP_004795629.1| - 1.4 8.9 8.1 1 9.4 0.5 2.6 1 1 1 2 2 2 0 Zinc-ribbon 5_nucleotid_C PF02872.18 gi|344211310|ref|YP_004795630.1| - 5.9e-28 98.1 0.0 9.9e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.28 gi|344211310|ref|YP_004795630.1| - 1.1e-07 32.6 0.0 2.4e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|344211310|ref|YP_004795630.1| - 0.0022 18.2 0.3 0.011 16.0 0.3 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AroM PF07302.11 gi|344211310|ref|YP_004795630.1| - 0.074 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 AroM protein Usp PF00582.26 gi|344211311|ref|YP_004795631.1| - 8.4e-09 36.1 2.2 1.6e-06 28.7 2.1 2.2 1 1 0 1 1 1 1 Universal stress protein family ORC4_C PF14629.6 gi|344211311|ref|YP_004795631.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus DnaI_N PF07319.11 gi|344211311|ref|YP_004795631.1| - 0.12 13.1 0.0 0.28 11.9 0.0 1.6 2 0 0 2 2 2 0 Primosomal protein DnaI N-terminus MS_channel PF00924.18 gi|344211312|ref|YP_004795632.1| - 4.8e-35 121.0 0.1 6.9e-35 120.5 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel EI24 PF07264.11 gi|344211312|ref|YP_004795632.1| - 0.088 13.0 2.7 0.13 12.5 2.7 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Chromate_transp PF02417.15 gi|344211312|ref|YP_004795632.1| - 0.09 12.9 4.8 0.14 12.3 4.8 1.2 1 0 0 1 1 1 0 Chromate transporter PAC2 PF09754.9 gi|344211313|ref|YP_004795633.1| - 6.9e-24 85.1 0.0 7.7e-24 84.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family zf-ribbon_3 PF13248.6 gi|344211314|ref|YP_004795634.1| - 9.9e-05 21.6 0.6 0.02 14.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|344211314|ref|YP_004795634.1| - 0.00025 20.6 1.4 0.049 13.3 0.2 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|344211314|ref|YP_004795634.1| - 0.00041 20.0 1.5 0.0073 16.0 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|344211314|ref|YP_004795634.1| - 0.00042 19.8 0.8 0.00089 18.7 0.8 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|344211314|ref|YP_004795634.1| - 0.0022 18.0 1.7 0.0035 17.3 1.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|344211314|ref|YP_004795634.1| - 0.0031 17.4 2.9 0.0062 16.4 2.9 1.5 1 1 0 1 1 1 1 Nudix N-terminal Elf1 PF05129.13 gi|344211314|ref|YP_004795634.1| - 0.0038 17.2 0.1 0.0043 17.1 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Anti-TRAP PF15777.5 gi|344211314|ref|YP_004795634.1| - 0.0047 16.9 1.7 0.99 9.4 0.1 2.1 1 1 1 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein Terminase_GpA PF05876.12 gi|344211314|ref|YP_004795634.1| - 0.0054 15.4 0.4 0.0054 15.4 0.4 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) PhnA_Zn_Ribbon PF08274.12 gi|344211314|ref|YP_004795634.1| - 0.0054 16.6 0.6 0.12 12.4 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|344211314|ref|YP_004795634.1| - 0.0088 15.9 1.1 0.015 15.2 1.1 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|344211314|ref|YP_004795634.1| - 0.0089 15.9 0.3 4.6 7.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF1272 PF06906.11 gi|344211314|ref|YP_004795634.1| - 0.011 15.7 0.2 3.6 7.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF35_N PF12172.8 gi|344211314|ref|YP_004795634.1| - 0.014 15.3 2.3 1.3 9.0 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF4379 PF14311.6 gi|344211314|ref|YP_004795634.1| - 0.021 15.2 0.5 0.026 14.9 0.5 1.2 1 0 0 1 1 1 0 Probable Zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|344211314|ref|YP_004795634.1| - 0.033 14.4 2.1 0.14 12.3 0.3 2.0 1 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|344211314|ref|YP_004795634.1| - 0.034 14.2 0.7 0.059 13.4 0.7 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|344211314|ref|YP_004795634.1| - 0.035 13.8 0.3 0.06 13.1 0.3 1.4 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1610 PF07754.11 gi|344211314|ref|YP_004795634.1| - 0.049 13.6 2.0 0.43 10.6 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0547 PF10571.9 gi|344211314|ref|YP_004795634.1| - 0.05 13.7 5.3 0.68 10.1 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_7 PF02591.15 gi|344211314|ref|YP_004795634.1| - 0.052 13.7 0.6 2.2 8.6 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|344211314|ref|YP_004795634.1| - 0.06 13.1 1.6 0.42 10.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|344211314|ref|YP_004795634.1| - 0.063 13.4 3.7 0.18 11.9 3.1 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|344211314|ref|YP_004795634.1| - 0.073 13.8 1.4 0.14 12.9 1.4 1.6 1 1 0 1 1 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|344211314|ref|YP_004795634.1| - 0.076 13.0 1.9 0.28 11.2 1.9 1.8 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|344211314|ref|YP_004795634.1| - 0.077 13.3 2.5 3.9 7.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon Cys_rich_CPXG PF14255.6 gi|344211314|ref|YP_004795634.1| - 0.081 12.8 2.0 0.22 11.5 2.1 1.7 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-LITAF-like PF10601.9 gi|344211314|ref|YP_004795634.1| - 0.086 13.1 1.8 5.4 7.4 0.1 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Auto_anti-p27 PF06677.12 gi|344211314|ref|YP_004795634.1| - 0.092 12.9 1.0 6.8 6.9 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin_2 PF18073.1 gi|344211314|ref|YP_004795634.1| - 0.11 12.3 2.0 5.3 6.9 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIS_C PF01096.18 gi|344211314|ref|YP_004795634.1| - 0.18 11.7 2.5 1.4 8.8 0.1 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.7 gi|344211314|ref|YP_004795634.1| - 0.22 12.0 3.4 9.9 6.7 3.6 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_ligase_ZBD PF03119.16 gi|344211314|ref|YP_004795634.1| - 0.22 11.6 3.4 7.6 6.7 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf_UBZ PF18439.1 gi|344211314|ref|YP_004795634.1| - 0.28 10.8 4.5 4.3 7.0 0.7 2.6 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|344211314|ref|YP_004795634.1| - 0.54 10.3 3.9 5.2 7.1 4.1 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain PEMT PF04191.13 gi|344211315|ref|YP_004795635.1| - 0.087 13.2 2.5 0.11 12.9 2.5 1.1 1 0 0 1 1 1 0 Phospholipid methyltransferase IF-2B PF01008.17 gi|344211316|ref|YP_004795636.1| - 7.6e-49 166.4 0.3 9.6e-49 166.1 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PMC2NT PF08066.12 gi|344211316|ref|YP_004795636.1| - 0.02 15.6 2.3 0.02 15.6 2.3 2.1 1 1 1 2 2 2 0 PMC2NT (NUC016) domain Phi_1 PF04674.12 gi|344211316|ref|YP_004795636.1| - 0.18 11.1 0.0 1.9 7.7 0.1 2.0 1 1 0 2 2 2 0 Phosphate-induced protein 1 conserved region Pilin_N PF07790.11 gi|344211317|ref|YP_004795637.1| - 3.3e-06 27.9 0.1 2.7e-05 25.0 0.1 1.9 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal DoxX PF07681.12 gi|344211318|ref|YP_004795638.1| - 9.8e-08 32.5 6.7 9.8e-08 32.5 6.7 4.4 3 2 1 4 4 4 1 DoxX DoxD PF04173.13 gi|344211318|ref|YP_004795638.1| - 0.056 13.4 10.3 0.15 11.9 0.4 3.7 3 1 1 4 4 4 0 TQO small subunit DoxD Acetyltransf_10 PF13673.7 gi|344211319|ref|YP_004795639.1| - 5.6e-14 52.2 0.1 7.2e-14 51.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344211319|ref|YP_004795639.1| - 6.2e-13 49.0 0.6 8.4e-13 48.6 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344211319|ref|YP_004795639.1| - 9.9e-13 48.3 0.6 1.7e-12 47.6 0.6 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211319|ref|YP_004795639.1| - 3.7e-10 39.6 0.1 1e-09 38.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|344211319|ref|YP_004795639.1| - 9.3e-05 22.6 0.6 0.00016 21.8 0.6 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344211319|ref|YP_004795639.1| - 0.00062 19.9 0.1 0.0028 17.8 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344211319|ref|YP_004795639.1| - 0.02 15.0 0.1 0.071 13.2 0.0 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344211319|ref|YP_004795639.1| - 0.022 14.9 0.0 0.036 14.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|344211319|ref|YP_004795639.1| - 0.07 12.8 0.2 0.16 11.6 0.2 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|344211319|ref|YP_004795639.1| - 0.095 12.4 0.2 0.13 12.0 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DNA_primase_S PF01896.19 gi|344211320|ref|YP_004795640.1| - 2.3e-24 86.4 0.0 5.9e-24 85.1 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit DUF1525 PF07511.11 gi|344211321|ref|YP_004795641.1| - 0.0069 16.5 0.3 0.013 15.6 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1525) Metal_resist PF13801.6 gi|344211321|ref|YP_004795641.1| - 0.01 16.0 5.3 0.01 16.0 5.3 2.3 1 1 1 2 2 2 0 Heavy-metal resistance Sld5 PF05916.11 gi|344211321|ref|YP_004795641.1| - 0.037 14.5 0.3 0.064 13.7 0.3 1.3 1 0 0 1 1 1 0 GINS complex protein DUF2390 PF09523.10 gi|344211321|ref|YP_004795641.1| - 0.081 13.3 3.3 0.14 12.4 3.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2390) Yip1 PF04893.17 gi|344211322|ref|YP_004795642.1| - 0.061 13.0 12.3 0.08 12.7 12.3 1.1 1 0 0 1 1 1 0 Yip1 domain E1-E2_ATPase PF00122.20 gi|344211322|ref|YP_004795642.1| - 0.07 12.7 0.3 0.07 12.7 0.3 2.0 2 0 0 2 2 2 0 E1-E2 ATPase HEAT PF02985.22 gi|344211322|ref|YP_004795642.1| - 0.69 10.3 2.7 13 6.4 0.3 2.5 2 0 0 2 2 2 0 HEAT repeat FtsL PF04999.13 gi|344211322|ref|YP_004795642.1| - 3.6 7.7 5.9 14 5.7 2.6 2.2 2 0 0 2 2 2 0 Cell division protein FtsL DUF2975 PF11188.8 gi|344211322|ref|YP_004795642.1| - 4.9 7.0 12.0 0.45 10.4 3.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Trypsin_2 PF13365.6 gi|344211323|ref|YP_004795643.1| - 8.4e-30 104.7 5.8 1.9e-29 103.5 5.8 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|344211323|ref|YP_004795643.1| - 8e-12 45.4 0.2 5e-11 42.8 0.2 2.0 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|344211323|ref|YP_004795643.1| - 4.4e-11 43.0 0.1 1.1e-10 41.6 0.1 1.8 1 0 0 1 1 1 1 PDZ domain Pico_P2A PF00947.19 gi|344211323|ref|YP_004795643.1| - 0.0043 17.1 0.5 0.012 15.7 0.1 1.8 2 0 0 2 2 2 1 Picornavirus core protein 2A E1-E2_ATPase PF00122.20 gi|344211325|ref|YP_004795645.1| - 2.1e-55 187.0 2.9 5.3e-55 185.8 2.9 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|344211325|ref|YP_004795645.1| - 5.8e-44 150.9 3.6 1.1e-43 150.0 3.6 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|344211325|ref|YP_004795645.1| - 2.8e-30 104.5 9.0 2.4e-14 53.5 0.0 4.8 5 0 0 5 5 5 2 Heavy-metal-associated domain HAD PF12710.7 gi|344211325|ref|YP_004795645.1| - 0.0017 18.8 0.1 0.0049 17.3 0.1 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|344211325|ref|YP_004795645.1| - 0.0063 16.3 0.9 0.013 15.3 0.9 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Glyco_tran_WecB PF03808.13 gi|344211325|ref|YP_004795645.1| - 0.12 12.3 0.0 0.33 10.9 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Lactamase_B_3 PF13483.6 gi|344211326|ref|YP_004795646.1| - 1.7e-21 76.8 0.1 2.6e-21 76.2 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|344211326|ref|YP_004795646.1| - 1.5e-15 57.3 1.0 1.9e-15 56.9 1.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|344211326|ref|YP_004795646.1| - 4.1e-07 30.2 7.6 9.8e-07 29.0 7.6 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PAS_4 PF08448.10 gi|344211327|ref|YP_004795647.1| - 1.7e-09 37.9 0.3 1e-08 35.4 0.0 2.3 3 0 0 3 3 3 1 PAS fold HATPase_c PF02518.26 gi|344211327|ref|YP_004795647.1| - 1.4e-08 35.2 0.0 2.5e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344211327|ref|YP_004795647.1| - 5e-05 23.3 0.3 0.00012 22.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Cob_adeno_trans PF01923.18 gi|344211327|ref|YP_004795647.1| - 0.074 13.2 0.2 0.15 12.2 0.2 1.4 1 0 0 1 1 1 0 Cobalamin adenosyltransferase HisKA PF00512.25 gi|344211327|ref|YP_004795647.1| - 0.13 12.3 1.7 0.23 11.5 0.3 2.3 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|344211327|ref|YP_004795647.1| - 0.15 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Response regulator receiver domain DNA_RNApol_7kD PF03604.13 gi|344211328|ref|YP_004795648.1| - 0.12 12.1 1.7 0.19 11.4 1.7 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1841 PF08897.11 gi|344211328|ref|YP_004795648.1| - 0.14 12.2 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) DUF1451 PF07295.11 gi|344211328|ref|YP_004795648.1| - 0.56 10.2 3.0 2.5 8.1 1.0 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain ILVD_EDD PF00920.21 gi|344211329|ref|YP_004795649.1| - 9.6e-198 658.0 1.3 1.1e-197 657.8 1.3 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|344211329|ref|YP_004795649.1| - 0.051 13.7 0.3 0.94 9.6 0.0 2.5 2 0 0 2 2 2 0 DGC domain GHMP_kinases_N PF00288.26 gi|344211330|ref|YP_004795650.1| - 2.6e-06 27.6 0.5 1.2e-05 25.4 0.2 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|344211330|ref|YP_004795650.1| - 0.0074 16.6 0.0 0.028 14.8 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Oxidored_FMN PF00724.20 gi|344211331|ref|YP_004795651.1| - 1.1e-66 225.5 0.0 1.3e-66 225.2 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|344211331|ref|YP_004795651.1| - 0.00028 20.1 0.0 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF368 PF04018.13 gi|344211332|ref|YP_004795652.1| - 2.2e-57 194.5 22.0 2.8e-57 194.1 22.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) GARS_A PF01071.19 gi|344211334|ref|YP_004795654.1| - 4e-11 43.0 0.0 8.1e-11 42.1 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_C PF02843.16 gi|344211334|ref|YP_004795654.1| - 4.1e-08 33.4 0.1 8.7e-08 32.3 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_5 PF13549.6 gi|344211334|ref|YP_004795654.1| - 0.19 11.2 0.0 0.47 9.9 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain XhlA PF10779.9 gi|344211335|ref|YP_004795655.1| - 0.0093 16.1 1.1 0.26 11.5 0.1 2.1 2 0 0 2 2 2 1 Haemolysin XhlA YfdX PF10938.8 gi|344211335|ref|YP_004795655.1| - 0.01 15.7 1.7 0.38 10.7 0.0 2.2 2 0 0 2 2 2 0 YfdX protein DUF4363 PF14276.6 gi|344211335|ref|YP_004795655.1| - 0.018 15.2 2.5 0.52 10.5 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) NPV_P10 PF05531.12 gi|344211335|ref|YP_004795655.1| - 0.053 14.0 0.5 0.3 11.6 0.1 1.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein TBCC_N PF16752.5 gi|344211335|ref|YP_004795655.1| - 0.058 13.8 3.1 5.3 7.5 0.1 2.0 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain Metal_resist PF13801.6 gi|344211335|ref|YP_004795655.1| - 0.069 13.4 3.0 0.086 13.0 0.1 2.0 1 1 1 2 2 2 0 Heavy-metal resistance EntA_Immun PF08951.10 gi|344211335|ref|YP_004795655.1| - 0.073 13.4 0.7 9 6.7 0.0 2.1 2 0 0 2 2 2 0 Enterocin A Immunity V-SNARE PF05008.15 gi|344211335|ref|YP_004795655.1| - 0.93 9.9 4.9 13 6.3 0.2 2.2 1 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus HTH_24 PF13412.6 gi|344211337|ref|YP_004795657.1| - 6.4e-13 48.0 0.6 6.7e-09 35.2 0.1 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344211337|ref|YP_004795657.1| - 7.7e-10 38.4 1.3 1.3e-06 28.2 0.1 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|344211337|ref|YP_004795657.1| - 4.5e-06 26.4 0.2 4.2e-05 23.4 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_Tnp_Tc3_2 PF01498.18 gi|344211337|ref|YP_004795657.1| - 1.7e-05 25.0 0.1 0.33 11.2 0.0 2.6 3 0 0 3 3 2 2 Transposase MarR PF01047.22 gi|344211337|ref|YP_004795657.1| - 6.4e-05 22.8 0.1 0.00043 20.1 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_50 PF18024.1 gi|344211337|ref|YP_004795657.1| - 0.00021 20.8 0.0 0.00045 19.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|344211337|ref|YP_004795657.1| - 0.00032 20.7 0.0 0.00076 19.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_WhiA PF02650.14 gi|344211337|ref|YP_004795657.1| - 0.00062 20.1 0.0 0.18 12.1 0.0 2.4 2 0 0 2 2 2 1 WhiA C-terminal HTH domain HTH_38 PF13936.6 gi|344211337|ref|YP_004795657.1| - 0.00068 19.4 0.1 0.0014 18.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|344211337|ref|YP_004795657.1| - 0.00086 19.2 0.2 0.0083 16.1 0.0 2.4 3 0 0 3 3 3 1 HTH domain HTH_31 PF13560.6 gi|344211337|ref|YP_004795657.1| - 0.0011 19.3 0.0 0.0029 17.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 gi|344211337|ref|YP_004795657.1| - 0.0012 18.6 0.8 0.12 12.2 0.0 3.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, lacI family YdaS_antitoxin PF15943.5 gi|344211337|ref|YP_004795657.1| - 0.0025 17.6 0.0 0.0056 16.5 0.0 1.6 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_IclR PF09339.10 gi|344211337|ref|YP_004795657.1| - 0.0066 16.2 0.5 0.47 10.3 0.0 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Phage_CI_repr PF07022.13 gi|344211337|ref|YP_004795657.1| - 0.0073 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Fe_dep_repress PF01325.19 gi|344211337|ref|YP_004795657.1| - 0.012 15.9 0.1 0.042 14.0 0.0 1.9 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|344211337|ref|YP_004795657.1| - 0.012 15.1 0.0 0.04 13.4 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|344211337|ref|YP_004795657.1| - 0.019 14.7 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.12 gi|344211337|ref|YP_004795657.1| - 0.048 13.5 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 HTH DNA binding domain TolA_bind_tri PF16331.5 gi|344211337|ref|YP_004795657.1| - 0.052 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation DUF948 PF06103.11 gi|344211337|ref|YP_004795657.1| - 0.068 13.4 0.2 0.22 11.8 0.1 1.9 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF948) HTH_37 PF13744.6 gi|344211337|ref|YP_004795657.1| - 0.092 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344211337|ref|YP_004795657.1| - 0.12 12.4 0.5 0.42 10.6 0.1 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain CENP-B_N PF04218.13 gi|344211337|ref|YP_004795657.1| - 0.12 12.0 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|344211337|ref|YP_004795657.1| - 0.13 11.6 0.0 0.49 9.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|344211337|ref|YP_004795657.1| - 0.14 12.3 0.0 0.36 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FlaC_arch PF05377.11 gi|344211337|ref|YP_004795657.1| - 0.43 11.0 1.8 0.45 10.9 0.2 1.9 2 0 0 2 2 1 0 Flagella accessory protein C (FlaC) HTH_32 PF13565.6 gi|344211337|ref|YP_004795657.1| - 0.61 10.7 3.3 2.3 8.9 0.2 2.9 2 2 1 3 3 3 0 Homeodomain-like domain DUF1840 PF08895.11 gi|344211337|ref|YP_004795657.1| - 3.6 8.0 6.4 0.82 10.0 1.6 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1840) TFIIS_C PF01096.18 gi|344211338|ref|YP_004795658.1| - 1.4e-17 63.2 3.5 1.4e-17 63.2 3.5 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|344211338|ref|YP_004795658.1| - 1.3e-06 28.1 9.0 1.4e-06 28.1 1.4 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.13 gi|344211338|ref|YP_004795658.1| - 2.4e-05 23.9 10.6 0.24 11.1 0.2 3.4 3 1 0 3 3 3 3 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|344211338|ref|YP_004795658.1| - 5.2e-05 22.5 12.7 0.0017 17.7 0.8 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|344211338|ref|YP_004795658.1| - 7.2e-05 22.7 11.7 0.00034 20.6 1.0 3.0 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344211338|ref|YP_004795658.1| - 0.00054 19.6 9.5 2.4 8.0 0.2 4.2 4 0 0 4 4 4 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344211338|ref|YP_004795658.1| - 0.002 18.0 13.0 0.068 13.1 1.8 2.8 2 1 1 3 3 3 2 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|344211338|ref|YP_004795658.1| - 0.0023 17.5 13.4 1.7 8.3 0.1 4.2 3 1 1 4 4 4 1 Ubiquitin-Binding Zinc Finger Prok-RING_1 PF14446.6 gi|344211338|ref|YP_004795658.1| - 0.0034 17.3 9.3 0.039 13.9 2.7 3.0 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 TackOD1 PF18551.1 gi|344211338|ref|YP_004795658.1| - 0.0043 16.8 5.5 0.54 9.9 0.2 2.2 1 1 1 2 2 2 2 Thaumarchaeal output domain 1 Zn_Tnp_IS1595 PF12760.7 gi|344211338|ref|YP_004795658.1| - 0.0059 16.6 1.2 0.0059 16.6 1.2 2.8 2 1 1 3 3 3 1 Transposase zinc-ribbon domain DUF2318 PF10080.9 gi|344211338|ref|YP_004795658.1| - 0.0061 16.7 8.8 0.047 13.8 1.6 3.0 2 1 1 3 3 3 1 Predicted membrane protein (DUF2318) Zn-ribbon_8 PF09723.10 gi|344211338|ref|YP_004795658.1| - 0.0099 16.0 17.5 0.23 11.6 2.3 3.6 2 2 0 3 3 3 2 Zinc ribbon domain HypA PF01155.19 gi|344211338|ref|YP_004795658.1| - 0.011 15.8 8.8 25 4.9 8.8 2.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ACC PF17848.1 gi|344211338|ref|YP_004795658.1| - 0.052 13.6 12.8 5.9 7.1 0.1 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zinc-ribbons_6 PF07191.12 gi|344211338|ref|YP_004795658.1| - 0.073 13.1 10.7 0.13 12.3 1.3 2.4 2 1 0 2 2 2 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|344211338|ref|YP_004795658.1| - 0.15 12.0 12.9 27 4.8 0.5 4.2 3 1 1 4 4 4 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|344211338|ref|YP_004795658.1| - 0.18 11.8 11.1 1.5 8.8 0.6 3.6 3 1 1 4 4 4 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|344211338|ref|YP_004795658.1| - 0.18 11.4 16.1 5.5 6.6 3.1 4.4 3 2 0 3 3 3 0 TFIIB zinc-binding IBR PF01485.21 gi|344211338|ref|YP_004795658.1| - 0.22 11.8 10.5 3.8 7.8 1.8 3.1 1 1 2 3 3 3 0 IBR domain, a half RING-finger domain zf-C4_Topoisom PF01396.19 gi|344211338|ref|YP_004795658.1| - 0.24 11.2 7.2 15 5.4 0.1 4.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger Rpr2 PF04032.16 gi|344211338|ref|YP_004795658.1| - 0.31 11.3 2.6 3.2 8.1 1.1 2.9 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain GFA PF04828.14 gi|344211338|ref|YP_004795658.1| - 0.41 11.0 11.6 3.1 8.2 0.1 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Zn_ribbon_recom PF13408.6 gi|344211338|ref|YP_004795658.1| - 0.61 10.6 11.9 25 5.5 0.5 4.0 3 1 1 4 4 4 0 Recombinase zinc beta ribbon domain Rubredoxin_2 PF18073.1 gi|344211338|ref|YP_004795658.1| - 0.76 9.6 19.4 3 7.6 1.1 4.3 4 1 0 4 4 4 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 gi|344211338|ref|YP_004795658.1| - 0.9 9.3 16.7 6.7 6.5 4.1 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-RING_7 PF02591.15 gi|344211338|ref|YP_004795658.1| - 1.3 9.3 12.9 8.4 6.7 0.3 4.2 3 1 1 4 4 4 0 C4-type zinc ribbon domain zinc-ribbon_6 PF10005.9 gi|344211338|ref|YP_004795658.1| - 2.2 9.0 8.5 2.5 8.8 0.3 2.9 2 1 1 3 3 3 0 zinc-ribbon domain PHD_2 PF13831.6 gi|344211338|ref|YP_004795658.1| - 2.4 7.8 10.4 39 3.9 0.2 4.0 3 1 1 4 4 4 0 PHD-finger PhnA_Zn_Ribbon PF08274.12 gi|344211338|ref|YP_004795658.1| - 2.7 8.0 15.0 21 5.1 0.1 4.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon PHD PF00628.29 gi|344211338|ref|YP_004795658.1| - 3.2 7.7 15.1 7.1 6.6 2.2 3.1 2 2 0 2 2 2 0 PHD-finger YhfH PF14149.6 gi|344211338|ref|YP_004795658.1| - 4.1 7.5 15.7 16 5.5 0.1 4.3 3 1 1 4 4 4 0 YhfH-like protein UPF0547 PF10571.9 gi|344211338|ref|YP_004795658.1| - 4.2 7.5 17.4 0.83 9.8 1.0 3.9 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 GATA PF00320.27 gi|344211338|ref|YP_004795658.1| - 4.3 7.0 11.4 4.3 7.0 0.5 3.7 3 1 0 3 3 3 0 GATA zinc finger zinc_ribbon_15 PF17032.5 gi|344211338|ref|YP_004795658.1| - 6.8 7.5 11.8 23 5.8 2.3 3.1 1 1 1 2 2 2 0 zinc-ribbon family DUF2197 PF09963.9 gi|344211338|ref|YP_004795658.1| - 8.2 6.8 9.5 14 6.1 0.1 3.1 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2197) Filament PF00038.21 gi|344211340|ref|YP_004795660.1| - 1.2e-05 25.0 4.3 1.9e-05 24.4 4.3 1.2 1 0 0 1 1 1 1 Intermediate filament protein HSBP1 PF06825.12 gi|344211340|ref|YP_004795660.1| - 0.00023 21.0 5.3 1.1 9.2 0.0 3.7 3 0 0 3 3 3 1 Heat shock factor binding protein 1 CHASE3 PF05227.13 gi|344211340|ref|YP_004795660.1| - 0.00027 20.9 3.6 0.00027 20.9 3.6 3.1 2 1 2 4 4 4 1 CHASE3 domain Baculo_PEP_C PF04513.12 gi|344211340|ref|YP_004795660.1| - 0.001 19.1 2.2 0.3 11.1 0.5 2.6 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus LUC7 PF03194.15 gi|344211340|ref|YP_004795660.1| - 0.0019 17.9 3.6 0.0031 17.2 3.6 1.4 1 0 0 1 1 1 1 LUC7 N_terminus DUF948 PF06103.11 gi|344211340|ref|YP_004795660.1| - 0.0029 17.8 4.6 0.01 16.1 0.3 2.8 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF948) ABC_tran_CTD PF16326.5 gi|344211340|ref|YP_004795660.1| - 0.0067 16.6 1.6 0.0067 16.6 1.6 2.6 2 0 0 2 2 2 1 ABC transporter C-terminal domain DUF148 PF02520.17 gi|344211340|ref|YP_004795660.1| - 0.0084 16.2 1.7 0.15 12.2 0.3 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF148 NPV_P10 PF05531.12 gi|344211340|ref|YP_004795660.1| - 0.012 16.1 5.6 0.044 14.3 0.5 2.9 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Apolipoprotein PF01442.18 gi|344211340|ref|YP_004795660.1| - 0.012 15.5 14.7 0.064 13.1 14.7 2.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain RHH_1 PF01402.21 gi|344211340|ref|YP_004795660.1| - 0.014 15.3 2.0 0.21 11.6 0.0 3.5 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family CENP-F_leu_zip PF10473.9 gi|344211340|ref|YP_004795660.1| - 0.018 15.1 4.0 0.04 13.9 4.0 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Zn-ribbon_8 PF09723.10 gi|344211340|ref|YP_004795660.1| - 0.02 15.0 1.7 0.05 13.7 1.7 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF2884 PF11101.8 gi|344211340|ref|YP_004795660.1| - 0.026 14.0 2.8 0.039 13.5 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) P4Ha_N PF08336.11 gi|344211340|ref|YP_004795660.1| - 0.035 14.1 1.1 9.2 6.3 0.0 2.6 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region zf-ribbon_3 PF13248.6 gi|344211340|ref|YP_004795660.1| - 0.05 13.0 2.6 1.5 8.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF713 PF05218.14 gi|344211340|ref|YP_004795660.1| - 0.062 13.0 0.2 0.12 12.1 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF713) TACC_C PF05010.14 gi|344211340|ref|YP_004795660.1| - 0.1 12.4 2.3 0.46 10.2 0.2 2.2 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal AdoMetDC_leader PF08132.11 gi|344211340|ref|YP_004795660.1| - 0.1 12.5 0.8 0.53 10.2 0.0 2.4 3 0 0 3 3 2 0 S-adenosyl-l-methionine decarboxylase leader peptide YabA PF06156.13 gi|344211340|ref|YP_004795660.1| - 0.12 13.0 0.9 0.79 10.4 0.2 2.4 1 1 1 2 2 2 0 Initiation control protein YabA Med2 PF11214.8 gi|344211340|ref|YP_004795660.1| - 0.12 12.5 2.7 0.29 11.3 0.3 2.2 1 1 1 2 2 2 0 Mediator complex subunit 2 Uso1_p115_C PF04871.13 gi|344211340|ref|YP_004795660.1| - 0.13 12.6 6.3 0.22 11.9 5.7 1.8 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region TRPM_tetra PF16519.5 gi|344211340|ref|YP_004795660.1| - 0.14 12.2 2.1 12 6.1 0.1 3.3 3 0 0 3 3 3 0 Tetramerisation domain of TRPM FlxA PF14282.6 gi|344211340|ref|YP_004795660.1| - 0.15 12.0 1.2 1.8 8.6 0.2 2.4 1 1 1 2 2 2 0 FlxA-like protein zf-C3HC4_3 PF13920.6 gi|344211340|ref|YP_004795660.1| - 0.16 11.9 1.0 0.24 11.3 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Crust_neuro_H PF03858.13 gi|344211340|ref|YP_004795660.1| - 0.18 12.6 0.2 1.6 9.6 0.1 2.4 2 0 0 2 2 2 0 Crustacean neurohormone H HIP1_clath_bdg PF16515.5 gi|344211340|ref|YP_004795660.1| - 0.2 12.3 8.9 2.2 8.9 0.9 3.1 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 zinc_ribbon_4 PF13717.6 gi|344211340|ref|YP_004795660.1| - 0.21 11.5 3.2 5.4 7.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Golgin_A5 PF09787.9 gi|344211340|ref|YP_004795660.1| - 0.22 11.0 4.5 0.21 11.0 3.6 1.4 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF4407 PF14362.6 gi|344211340|ref|YP_004795660.1| - 0.22 10.8 11.2 0.017 14.5 4.4 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) CCDC-167 PF15188.6 gi|344211340|ref|YP_004795660.1| - 0.31 11.4 5.9 4.8 7.6 0.4 2.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Atg14 PF10186.9 gi|344211340|ref|YP_004795660.1| - 0.32 10.0 2.8 0.28 10.2 1.4 1.6 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 CLZ PF16526.5 gi|344211340|ref|YP_004795660.1| - 0.42 11.0 2.9 9.7 6.6 0.3 3.1 1 1 2 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels TolA_bind_tri PF16331.5 gi|344211340|ref|YP_004795660.1| - 0.52 10.4 4.5 0.66 10.1 0.5 3.1 2 1 1 3 3 2 0 TolA binding protein trimerisation FlaC_arch PF05377.11 gi|344211340|ref|YP_004795660.1| - 0.53 10.7 3.8 6.6 7.2 0.6 3.5 2 2 2 4 4 4 0 Flagella accessory protein C (FlaC) Prominin PF05478.11 gi|344211340|ref|YP_004795660.1| - 0.55 8.1 2.5 1.4 6.8 1.9 1.7 1 1 1 2 2 2 0 Prominin zinc_ribbon_2 PF13240.6 gi|344211340|ref|YP_004795660.1| - 0.58 10.0 2.3 8.4 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF16 PF01519.16 gi|344211340|ref|YP_004795660.1| - 0.7 10.4 3.6 7.3 7.1 3.4 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 Spectrin PF00435.21 gi|344211340|ref|YP_004795660.1| - 1 9.9 8.0 4.5 7.8 0.6 3.5 2 1 2 4 4 4 0 Spectrin repeat DUF1664 PF07889.12 gi|344211340|ref|YP_004795660.1| - 1.2 9.2 5.7 5.6 7.0 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|344211340|ref|YP_004795660.1| - 1.3 7.8 6.5 3 6.7 6.5 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein TBCC_N PF16752.5 gi|344211340|ref|YP_004795660.1| - 1.4 9.4 5.2 2.1 8.8 0.6 2.7 1 1 2 3 3 3 0 Tubulin-specific chaperone C N-terminal domain ARGLU PF15346.6 gi|344211340|ref|YP_004795660.1| - 2 8.3 8.2 3.3 7.6 7.9 1.6 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 DUF5446 PF17522.2 gi|344211340|ref|YP_004795660.1| - 2.1 8.6 7.8 18 5.6 0.1 2.9 2 2 0 2 2 2 0 Family of unknown function (DUF5446) Pox_A_type_inc PF04508.12 gi|344211340|ref|YP_004795660.1| - 2.5 8.1 5.3 46 4.1 0.0 3.9 4 0 0 4 4 3 0 Viral A-type inclusion protein repeat DUF1515 PF07439.11 gi|344211340|ref|YP_004795660.1| - 3.9 7.5 7.3 1.2 9.1 1.7 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) HSCB_C PF07743.13 gi|344211340|ref|YP_004795660.1| - 6.7 7.3 11.2 4.8 7.7 0.5 3.3 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain FYVE_2 PF02318.16 gi|344211340|ref|YP_004795660.1| - 8.2 6.7 6.6 4.4 7.5 0.8 2.8 1 1 2 3 3 3 0 FYVE-type zinc finger ATPase PF06745.13 gi|344211341|ref|YP_004795661.1| - 4.7e-10 39.2 0.1 9e-05 21.9 0.1 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|344211341|ref|YP_004795661.1| - 0.00017 21.3 0.7 0.028 14.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.11 gi|344211341|ref|YP_004795661.1| - 0.0036 16.6 0.0 0.0087 15.4 0.0 1.6 2 0 0 2 2 2 1 Rad51 DUF438 PF04282.13 gi|344211341|ref|YP_004795661.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF438) Caroten_synth PF04240.12 gi|344211342|ref|YP_004795662.1| - 7.3e-66 222.0 17.8 9.6e-66 221.6 17.8 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein UbiA PF01040.18 gi|344211343|ref|YP_004795663.1| - 9.2e-30 103.8 15.3 9.2e-30 103.8 15.3 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family PIG-Y PF15159.6 gi|344211343|ref|YP_004795663.1| - 0.018 16.0 1.8 0.018 16.0 1.8 3.3 3 1 0 3 3 3 0 Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y DUF4349 PF14257.6 gi|344211343|ref|YP_004795663.1| - 0.21 11.0 1.0 0.75 9.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) Amino_oxidase PF01593.24 gi|344211344|ref|YP_004795664.1| - 5.6e-37 128.1 0.1 8.1e-37 127.6 0.1 1.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|344211344|ref|YP_004795664.1| - 8.9e-18 64.3 0.1 2e-17 63.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344211344|ref|YP_004795664.1| - 1.7e-12 47.6 5.5 1.7e-11 44.3 5.5 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|344211344|ref|YP_004795664.1| - 7.6e-08 32.1 0.0 1.1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344211344|ref|YP_004795664.1| - 3e-07 29.5 0.0 0.00061 18.6 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|344211344|ref|YP_004795664.1| - 2.2e-06 27.0 1.4 4.8e-06 25.9 1.4 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344211344|ref|YP_004795664.1| - 1.2e-05 24.7 2.7 4.8e-05 22.7 0.2 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344211344|ref|YP_004795664.1| - 1.4e-05 25.6 1.0 0.00033 21.1 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344211344|ref|YP_004795664.1| - 2.5e-05 23.7 0.4 0.0093 15.2 0.0 3.0 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344211344|ref|YP_004795664.1| - 0.00016 20.9 0.5 0.00038 19.7 0.5 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|344211344|ref|YP_004795664.1| - 0.00042 19.7 0.4 0.00071 18.9 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|344211344|ref|YP_004795664.1| - 0.00054 19.3 0.4 0.00092 18.5 0.4 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|344211344|ref|YP_004795664.1| - 0.0071 15.7 0.2 0.012 14.9 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain MCRA PF06100.11 gi|344211344|ref|YP_004795664.1| - 0.012 14.4 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 MCRA family Trp_halogenase PF04820.14 gi|344211344|ref|YP_004795664.1| - 0.091 11.6 0.3 0.15 10.8 0.3 1.3 1 0 0 1 1 1 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|344211344|ref|YP_004795664.1| - 0.095 12.6 0.2 0.2 11.5 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|344211344|ref|YP_004795664.1| - 0.16 12.4 0.0 0.33 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|344211344|ref|YP_004795664.1| - 0.31 11.0 1.4 12 5.9 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Peptidase_M24 PF00557.24 gi|344211345|ref|YP_004795665.1| - 2.7e-46 157.9 0.5 3.4e-46 157.6 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|344211345|ref|YP_004795665.1| - 2.7e-08 34.5 0.1 8.7e-08 32.9 0.0 1.9 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain RHH_1 PF01402.21 gi|344211347|ref|YP_004795667.1| - 0.00019 21.2 0.0 0.00027 20.8 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Ribosomal_L15e PF00827.17 gi|344211347|ref|YP_004795667.1| - 0.1 12.3 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal L15 DbpA PF03880.15 gi|344211347|ref|YP_004795667.1| - 0.15 12.0 0.0 0.29 11.2 0.0 1.5 1 1 0 1 1 1 0 DbpA RNA binding domain Glyoxalase PF00903.25 gi|344211350|ref|YP_004795670.1| - 3.3e-10 40.2 0.0 3.2e-05 24.1 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|344211350|ref|YP_004795670.1| - 2.3e-05 25.1 1.4 0.29 11.9 0.1 2.6 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|344211350|ref|YP_004795670.1| - 0.093 13.0 0.0 0.53 10.6 0.0 2.1 2 1 1 3 3 3 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|344211350|ref|YP_004795670.1| - 0.11 12.4 0.0 3.1 7.7 0.0 2.7 4 0 0 4 4 4 0 Glyoxalase-like domain DZR PF12773.7 gi|344211351|ref|YP_004795671.1| - 0.00036 20.5 0.5 0.00052 20.0 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|344211351|ref|YP_004795671.1| - 0.00046 20.1 1.5 0.01 15.7 2.4 2.0 1 1 1 2 2 2 2 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|344211351|ref|YP_004795671.1| - 0.00096 18.7 4.6 0.08 12.6 1.2 2.5 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|344211351|ref|YP_004795671.1| - 0.0029 17.3 1.7 0.95 9.3 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|344211351|ref|YP_004795671.1| - 0.0033 16.9 0.6 0.0096 15.4 0.7 1.7 1 1 1 2 2 2 1 TFIIB zinc-binding UPF0547 PF10571.9 gi|344211351|ref|YP_004795671.1| - 0.0033 17.5 3.9 0.096 12.8 0.3 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 DUF3268 PF11672.8 gi|344211351|ref|YP_004795671.1| - 0.0046 17.3 0.2 0.0059 16.9 0.2 1.2 1 0 0 1 1 1 1 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|344211351|ref|YP_004795671.1| - 0.0057 16.7 1.4 2.3 8.4 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|344211351|ref|YP_004795671.1| - 0.006 16.2 0.4 0.44 10.3 0.0 2.2 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|344211351|ref|YP_004795671.1| - 0.0068 15.8 1.0 0.92 9.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS91 PF14319.6 gi|344211351|ref|YP_004795671.1| - 0.011 15.7 0.4 0.69 10.0 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-binding domain Zn_ribbon_recom PF13408.6 gi|344211351|ref|YP_004795671.1| - 0.026 15.0 1.7 0.19 12.3 1.4 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain GFA PF04828.14 gi|344211351|ref|YP_004795671.1| - 0.026 14.8 1.7 2.7 8.4 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ISL3 PF14690.6 gi|344211351|ref|YP_004795671.1| - 0.031 14.9 1.0 1.7 9.4 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1610 PF07754.11 gi|344211351|ref|YP_004795671.1| - 0.032 14.2 1.0 6.2 6.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.11 gi|344211351|ref|YP_004795671.1| - 0.038 13.7 5.8 0.87 9.3 0.6 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|344211351|ref|YP_004795671.1| - 0.046 13.7 0.3 0.061 13.3 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-LITAF-like PF10601.9 gi|344211351|ref|YP_004795671.1| - 0.06 13.6 4.0 0.48 10.7 0.7 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|344211351|ref|YP_004795671.1| - 0.071 12.8 0.8 1.2 9.0 0.8 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein OrfB_Zn_ribbon PF07282.11 gi|344211351|ref|YP_004795671.1| - 0.074 13.0 1.5 0.27 11.2 1.4 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|344211351|ref|YP_004795671.1| - 0.074 13.5 3.9 0.17 12.4 0.8 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DNA_ligase_ZBD PF03119.16 gi|344211351|ref|YP_004795671.1| - 0.078 13.0 2.0 7.7 6.6 0.2 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1272 PF06906.11 gi|344211351|ref|YP_004795671.1| - 0.081 13.0 0.7 1.5 9.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 gi|344211351|ref|YP_004795671.1| - 0.088 12.8 1.4 0.37 10.8 1.5 1.8 1 1 1 2 2 2 0 zinc-ribbons Zn_ribbon_SprT PF17283.2 gi|344211351|ref|YP_004795671.1| - 0.1 12.5 5.1 0.49 10.3 0.6 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-C2H2 PF00096.26 gi|344211351|ref|YP_004795671.1| - 0.1 13.1 2.9 2.9 8.5 0.3 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type Terminase_GpA PF05876.12 gi|344211351|ref|YP_004795671.1| - 0.12 10.9 0.7 0.14 10.7 0.7 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.10 gi|344211351|ref|YP_004795671.1| - 0.13 12.0 0.3 2.8 7.8 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|344211351|ref|YP_004795671.1| - 0.22 11.6 4.0 1.7 8.7 0.0 2.7 2 1 1 3 3 3 0 Zinc-ribbon Ogr_Delta PF04606.12 gi|344211351|ref|YP_004795671.1| - 0.29 11.1 5.1 4.3 7.4 1.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-Mss51 PF13824.6 gi|344211351|ref|YP_004795671.1| - 0.29 11.2 4.8 1.4 9.1 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CpXC PF14353.6 gi|344211351|ref|YP_004795671.1| - 0.38 10.8 1.9 9.4 6.3 0.0 2.1 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.7 gi|344211351|ref|YP_004795671.1| - 0.9 9.6 7.2 4.8 7.3 5.9 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HMGL-like PF00682.19 gi|344211353|ref|YP_004795673.1| - 9.8e-83 277.7 3.5 9.8e-83 277.7 3.5 1.4 2 0 0 2 2 2 1 HMGL-like AP_endonuc_2 PF01261.24 gi|344211353|ref|YP_004795673.1| - 0.00074 19.0 0.5 0.0075 15.7 0.1 2.3 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel TPP_enzyme_N PF02776.18 gi|344211354|ref|YP_004795674.1| - 9.7e-52 175.0 0.2 2.2e-51 173.9 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|344211354|ref|YP_004795674.1| - 1.7e-51 174.1 0.3 6.1e-51 172.2 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|344211354|ref|YP_004795674.1| - 4.2e-47 159.3 0.0 7.5e-47 158.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|344211354|ref|YP_004795674.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit XFP_N PF09364.10 gi|344211354|ref|YP_004795674.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain ALS_ss_C PF10369.9 gi|344211355|ref|YP_004795675.1| - 6.5e-23 80.7 0.1 1.1e-22 80.0 0.1 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT PF01842.25 gi|344211355|ref|YP_004795675.1| - 2.1e-13 49.8 0.3 6.7e-13 48.2 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_5 PF13710.6 gi|344211355|ref|YP_004795675.1| - 2.3e-12 46.5 0.0 5.5e-12 45.3 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|344211355|ref|YP_004795675.1| - 0.003 18.1 0.0 0.0057 17.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain NIL PF09383.10 gi|344211355|ref|YP_004795675.1| - 0.013 15.3 0.1 4 7.4 0.0 2.7 2 1 0 2 2 2 0 NIL domain Acylphosphatase PF00708.18 gi|344211355|ref|YP_004795675.1| - 0.061 13.7 0.2 14 6.1 0.0 2.8 3 0 0 3 3 3 0 Acylphosphatase KH_1 PF00013.29 gi|344211355|ref|YP_004795675.1| - 0.087 12.7 0.6 0.68 9.8 0.2 2.6 2 1 0 2 2 2 0 KH domain IlvN PF07991.12 gi|344211356|ref|YP_004795676.1| - 3.6e-71 238.1 0.1 5.1e-71 237.6 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|344211356|ref|YP_004795676.1| - 4.3e-60 202.2 1.3 6.3e-60 201.6 1.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|344211356|ref|YP_004795676.1| - 5.1e-07 30.2 0.0 1e-06 29.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|344211356|ref|YP_004795676.1| - 3.1e-05 23.4 0.0 5.4e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|344211356|ref|YP_004795676.1| - 0.00055 20.1 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|344211356|ref|YP_004795676.1| - 0.0018 17.9 0.0 0.003 17.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DMP12 PF16779.5 gi|344211356|ref|YP_004795676.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 DNA-mimic protein Aconitase PF00330.20 gi|344211358|ref|YP_004795678.1| - 6.3e-148 493.6 0.0 7.2e-148 493.4 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|344211358|ref|YP_004795678.1| - 0.0018 17.0 0.0 0.0031 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF3944 PF13099.6 gi|344211358|ref|YP_004795678.1| - 0.076 12.9 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) Aconitase_C PF00694.19 gi|344211359|ref|YP_004795679.1| - 8e-18 65.0 0.0 1.3e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Cas_Cas02710 PF09670.10 gi|344211360|ref|YP_004795680.1| - 0.00046 19.1 0.0 0.00059 18.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) KR PF08659.10 gi|344211360|ref|YP_004795680.1| - 0.038 13.9 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 KR domain DUF4364 PF14277.6 gi|344211360|ref|YP_004795680.1| - 0.051 13.3 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) ThiC_Rad_SAM PF01964.18 gi|344211360|ref|YP_004795680.1| - 0.11 11.2 0.1 0.17 10.7 0.1 1.1 1 0 0 1 1 1 0 Radical SAM ThiC family Iso_dh PF00180.20 gi|344211361|ref|YP_004795681.1| - 5.4e-93 311.9 0.1 6.1e-93 311.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoRC PF00455.22 gi|344211362|ref|YP_004795682.1| - 3.8e-52 176.5 0.0 5.3e-52 176.0 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|344211362|ref|YP_004795682.1| - 2.1e-16 59.4 0.1 3.4e-16 58.7 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|344211362|ref|YP_004795682.1| - 7.4e-08 32.2 0.2 1.2e-07 31.5 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|344211362|ref|YP_004795682.1| - 3.9e-06 26.6 0.0 7.7e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344211362|ref|YP_004795682.1| - 9e-06 25.5 0.1 2.5e-05 24.0 0.1 1.7 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|344211362|ref|YP_004795682.1| - 4.6e-05 23.0 0.0 0.00015 21.4 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|344211362|ref|YP_004795682.1| - 0.00013 22.0 0.6 0.00039 20.4 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|344211362|ref|YP_004795682.1| - 0.00024 21.0 0.1 0.00043 20.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344211362|ref|YP_004795682.1| - 0.00039 19.9 0.2 0.00076 19.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344211362|ref|YP_004795682.1| - 0.0009 19.0 0.1 0.0019 17.9 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF742 PF05331.11 gi|344211362|ref|YP_004795682.1| - 0.0024 17.7 0.0 0.0064 16.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF742) FaeA PF04703.12 gi|344211362|ref|YP_004795682.1| - 0.0027 18.0 0.1 0.068 13.6 0.0 2.3 2 0 0 2 2 2 1 FaeA-like protein HTH_28 PF13518.6 gi|344211362|ref|YP_004795682.1| - 0.0031 17.6 0.1 0.0072 16.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|344211362|ref|YP_004795682.1| - 0.011 16.4 0.0 0.034 14.8 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal TrmB PF01978.19 gi|344211362|ref|YP_004795682.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|344211362|ref|YP_004795682.1| - 0.025 14.6 0.3 0.065 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix HTH_38 PF13936.6 gi|344211362|ref|YP_004795682.1| - 0.035 13.9 0.1 0.08 12.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|344211362|ref|YP_004795682.1| - 0.05 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor Mga PF05043.13 gi|344211362|ref|YP_004795682.1| - 0.054 14.1 0.0 0.1 13.2 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|344211362|ref|YP_004795682.1| - 0.058 13.6 0.2 0.11 12.8 0.2 1.5 1 0 0 1 1 1 0 Transposase DDRGK PF09756.9 gi|344211362|ref|YP_004795682.1| - 0.075 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain Fe_dep_repress PF01325.19 gi|344211362|ref|YP_004795682.1| - 0.095 12.9 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Mga PF08280.11 gi|344211362|ref|YP_004795682.1| - 0.098 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Rrf2 PF02082.20 gi|344211362|ref|YP_004795682.1| - 0.1 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.13 gi|344211362|ref|YP_004795682.1| - 0.11 12.6 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_36 PF13730.6 gi|344211362|ref|YP_004795682.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_NinH PF06322.11 gi|344211362|ref|YP_004795682.1| - 0.16 11.9 0.0 0.49 10.3 0.0 1.8 1 0 0 1 1 1 0 Phage NinH protein Sigma70_r4 PF04545.16 gi|344211362|ref|YP_004795682.1| - 0.17 11.5 1.9 0.18 11.4 0.2 2.0 2 0 0 2 2 1 0 Sigma-70, region 4 PfkB PF00294.24 gi|344211363|ref|YP_004795683.1| - 8e-41 140.3 3.7 1.1e-40 139.9 3.7 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|344211363|ref|YP_004795683.1| - 0.049 13.0 0.0 0.079 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|344211364|ref|YP_004795684.1| - 0.014 14.7 3.6 0.022 14.0 3.6 1.2 1 0 0 1 1 1 0 pfkB family carbohydrate kinase DeoC PF01791.9 gi|344211365|ref|YP_004795685.1| - 9.5e-35 120.3 0.0 1.1e-34 120.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase VAPB_antitox PF02697.14 gi|344211366|ref|YP_004795686.1| - 0.033 15.0 0.2 0.034 14.9 0.2 1.1 1 0 0 1 1 1 0 Putative antitoxin FIST PF08495.10 gi|344211368|ref|YP_004795688.1| - 9.6e-32 110.4 0.5 1.8e-30 106.2 0.2 2.2 2 1 0 2 2 2 1 FIST N domain FIST_C PF10442.9 gi|344211368|ref|YP_004795688.1| - 9.8e-22 77.3 0.1 8.9e-21 74.2 0.0 2.2 2 0 0 2 2 2 1 FIST C domain OsmC PF02566.19 gi|344211369|ref|YP_004795689.1| - 4.9e-13 49.4 0.0 7.2e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein UbiA PF01040.18 gi|344211371|ref|YP_004795691.1| - 7.1e-13 48.4 22.9 3.2e-12 46.3 22.3 2.0 1 1 0 1 1 1 1 UbiA prenyltransferase family DnaJ PF00226.31 gi|344211372|ref|YP_004795692.1| - 7.6e-19 67.6 0.0 1.1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DUF1684 PF07920.11 gi|344211373|ref|YP_004795693.1| - 1.1e-50 171.5 0.1 1.6e-50 171.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) CPBP PF02517.16 gi|344211374|ref|YP_004795694.1| - 6.1e-14 52.2 0.1 6.1e-14 52.2 0.1 2.3 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease UCR_Fe-S_N PF10399.9 gi|344211374|ref|YP_004795694.1| - 1.6 8.1 6.2 2.8 7.3 4.2 2.3 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Phage_Coat_Gp8 PF05371.12 gi|344211374|ref|YP_004795694.1| - 4 7.3 4.9 2.8 7.8 2.7 1.9 1 1 1 2 2 2 0 Phage major coat protein, Gp8 PAS_9 PF13426.7 gi|344211375|ref|YP_004795695.1| - 1.2e-22 80.1 0.0 3.8e-11 43.2 0.0 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.24 gi|344211375|ref|YP_004795695.1| - 2.5e-22 79.2 0.0 6.1e-22 77.9 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|344211375|ref|YP_004795695.1| - 1.2e-18 67.1 0.1 5e-08 32.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|344211375|ref|YP_004795695.1| - 3.8e-16 59.3 0.4 7.9e-08 32.5 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|344211375|ref|YP_004795695.1| - 1.6e-09 37.6 0.1 0.002 18.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.12 gi|344211375|ref|YP_004795695.1| - 3.7e-07 30.3 1.1 6e-05 23.3 0.0 3.2 3 1 0 3 3 3 1 PAS fold GAF PF01590.26 gi|344211375|ref|YP_004795695.1| - 8.5e-05 23.2 0.0 0.00033 21.3 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|344211375|ref|YP_004795695.1| - 0.0024 18.0 0.0 4.2 7.6 0.0 3.2 2 1 0 2 2 2 2 PAS fold GAF_3 PF13492.6 gi|344211375|ref|YP_004795695.1| - 0.024 15.0 0.0 0.095 13.0 0.0 2.0 2 0 0 2 2 2 0 GAF domain OKR_DC_1_N PF03709.15 gi|344211375|ref|YP_004795695.1| - 0.072 13.4 0.0 0.21 11.9 0.0 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain MLTR_LBD PF17765.1 gi|344211375|ref|YP_004795695.1| - 0.15 12.2 2.8 0.27 11.4 0.7 2.5 2 1 0 2 2 2 0 MmyB-like transcription regulator ligand binding domain DctM PF06808.12 gi|344211376|ref|YP_004795696.1| - 6.8e-61 206.3 39.1 6.8e-61 206.3 39.1 1.6 1 1 0 1 1 1 1 Tripartite ATP-independent periplasmic transporter, DctM component NMT1_3 PF16868.5 gi|344211377|ref|YP_004795697.1| - 1e-27 97.4 0.0 1.3e-27 97.0 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family TAT_signal PF10518.9 gi|344211377|ref|YP_004795697.1| - 0.003 17.4 0.3 0.0093 15.8 0.3 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DAO PF01266.24 gi|344211378|ref|YP_004795698.1| - 2.1e-10 40.7 0.1 0.00023 20.8 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|344211378|ref|YP_004795698.1| - 4.4e-09 36.1 1.4 0.00014 21.2 0.3 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|344211378|ref|YP_004795698.1| - 1.1e-08 34.7 0.7 0.00018 20.8 0.5 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|344211378|ref|YP_004795698.1| - 1.6e-06 27.1 1.4 0.0012 17.6 1.4 2.2 2 0 0 2 2 2 2 HI0933-like protein Trp_halogenase PF04820.14 gi|344211378|ref|YP_004795698.1| - 1.4e-05 24.1 1.5 0.0073 15.2 0.0 2.1 1 1 0 2 2 2 2 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|344211378|ref|YP_004795698.1| - 0.00013 22.1 0.3 0.0004 20.6 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|344211378|ref|YP_004795698.1| - 0.00017 21.1 4.5 0.00031 20.2 4.2 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|344211378|ref|YP_004795698.1| - 0.00029 20.1 2.2 0.0027 16.9 1.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|344211378|ref|YP_004795698.1| - 0.00077 19.5 0.6 0.52 10.3 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|344211378|ref|YP_004795698.1| - 0.00093 18.4 3.3 0.00093 18.4 3.3 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|344211378|ref|YP_004795698.1| - 0.0045 16.3 0.5 0.015 14.5 0.6 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|344211378|ref|YP_004795698.1| - 0.0074 15.4 0.9 0.52 9.3 0.6 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 gi|344211378|ref|YP_004795698.1| - 0.074 12.3 0.2 0.12 11.5 0.2 1.3 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|344211378|ref|YP_004795698.1| - 0.11 11.8 0.5 0.17 11.2 0.5 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Response_reg PF00072.24 gi|344211379|ref|YP_004795699.1| - 1.4e-13 51.0 0.7 2.5e-13 50.2 0.1 1.6 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.10 gi|344211379|ref|YP_004795699.1| - 8.9e-05 22.7 6.5 0.00024 21.4 6.5 1.8 1 0 0 1 1 1 1 HalX domain 2-Hacid_dh_C PF02826.19 gi|344211380|ref|YP_004795700.1| - 2.9e-51 173.3 0.0 4.1e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|344211380|ref|YP_004795700.1| - 9.5e-09 35.0 0.0 1.2e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|344211380|ref|YP_004795700.1| - 0.0044 17.2 0.0 0.0069 16.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|344211380|ref|YP_004795700.1| - 0.12 12.5 0.0 0.41 10.7 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|344211380|ref|YP_004795700.1| - 0.15 12.7 0.0 0.31 11.7 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DpaA_N PF16924.5 gi|344211380|ref|YP_004795700.1| - 0.18 11.9 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain Semialdhyde_dhC PF02774.18 gi|344211381|ref|YP_004795701.1| - 1.1e-31 110.4 0.0 1.5e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.24 gi|344211381|ref|YP_004795701.1| - 1.7e-30 106.0 0.0 3.5e-30 104.9 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.16 gi|344211381|ref|YP_004795701.1| - 0.015 16.0 0.0 0.028 15.1 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Phage_Coat_A PF05357.13 gi|344211381|ref|YP_004795701.1| - 0.18 11.6 0.0 0.42 10.4 0.0 1.5 1 0 0 1 1 1 0 Phage Coat Protein A Alkyl_sulf_dimr PF14863.6 gi|344211381|ref|YP_004795701.1| - 0.2 12.1 0.0 0.32 11.5 0.0 1.2 1 0 0 1 1 1 0 Alkyl sulfatase dimerisation AAA_12 PF13087.6 gi|344211383|ref|YP_004795703.1| - 5.9e-44 150.1 0.0 1.1e-43 149.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|344211383|ref|YP_004795703.1| - 1.1e-32 113.9 0.0 3.5e-17 63.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|344211383|ref|YP_004795703.1| - 9.1e-16 58.1 0.4 1.7e-15 57.2 0.4 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|344211383|ref|YP_004795703.1| - 5.2e-09 36.6 0.0 1.9e-08 34.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|344211383|ref|YP_004795703.1| - 2.3e-06 27.5 0.0 0.14 11.9 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|344211383|ref|YP_004795703.1| - 0.00092 19.3 0.0 0.0023 18.0 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|344211383|ref|YP_004795703.1| - 0.0011 18.9 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_25 PF13481.6 gi|344211383|ref|YP_004795703.1| - 0.0032 17.1 1.0 0.019 14.5 0.1 2.5 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|344211383|ref|YP_004795703.1| - 0.012 16.0 0.1 0.044 14.2 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|344211383|ref|YP_004795703.1| - 0.017 15.4 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|344211383|ref|YP_004795703.1| - 0.04 13.2 0.0 0.28 10.4 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.6 gi|344211383|ref|YP_004795703.1| - 0.04 13.7 0.6 0.21 11.4 0.2 2.5 2 1 0 2 2 2 0 UvrD-like helicase C-terminal domain PhoH PF02562.16 gi|344211383|ref|YP_004795703.1| - 0.048 13.1 0.0 0.56 9.6 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein FAM27 PF15832.5 gi|344211383|ref|YP_004795703.1| - 0.07 13.7 1.5 0.17 12.5 1.5 1.6 1 0 0 1 1 1 0 FAM27 D and E protein family AAA PF00004.29 gi|344211383|ref|YP_004795703.1| - 0.079 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|344211383|ref|YP_004795703.1| - 0.16 11.7 0.0 0.36 10.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|344211383|ref|YP_004795703.1| - 0.17 11.6 0.0 0.38 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|344211383|ref|YP_004795703.1| - 0.17 11.0 0.0 0.65 9.1 0.0 1.8 2 0 0 2 2 2 0 PIF1-like helicase tRNA-synt_1b PF00579.25 gi|344211384|ref|YP_004795704.1| - 3.2e-59 200.7 0.0 3.9e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Methyltransf_11 PF08241.12 gi|344211385|ref|YP_004795705.1| - 2.2e-19 69.9 0.2 3.8e-19 69.1 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344211385|ref|YP_004795705.1| - 2.9e-18 66.4 0.1 6.5e-18 65.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344211385|ref|YP_004795705.1| - 4.7e-10 39.5 0.0 6.5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211385|ref|YP_004795705.1| - 1e-09 39.0 0.1 2.2e-09 38.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344211385|ref|YP_004795705.1| - 2.3e-09 37.3 0.0 2.9e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|344211385|ref|YP_004795705.1| - 3.4e-05 23.6 0.0 4.6e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|344211385|ref|YP_004795705.1| - 0.013 14.4 0.0 0.017 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.15 gi|344211385|ref|YP_004795705.1| - 0.017 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase MetW PF07021.12 gi|344211385|ref|YP_004795705.1| - 0.049 13.2 0.0 0.066 12.8 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|344211385|ref|YP_004795705.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) IMS PF00817.20 gi|344211387|ref|YP_004795707.1| - 2.1e-39 134.9 0.3 3.4e-39 134.2 0.3 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|344211387|ref|YP_004795707.1| - 5.1e-12 46.5 0.0 9.7e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|344211387|ref|YP_004795707.1| - 2.2e-06 27.6 0.0 4.6e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|344211387|ref|YP_004795707.1| - 2.7e-05 24.7 0.0 8.3e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|344211387|ref|YP_004795707.1| - 0.00014 21.6 0.0 0.0056 16.5 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF1805 PF08827.11 gi|344211387|ref|YP_004795707.1| - 0.0059 16.9 0.5 0.073 13.4 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1805) Cdd1 PF11731.8 gi|344211387|ref|YP_004795707.1| - 0.023 14.9 0.0 0.051 13.8 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus CinA PF02464.17 gi|344211387|ref|YP_004795707.1| - 0.086 12.4 0.2 0.25 10.9 0.2 1.8 1 0 0 1 1 1 0 Competence-damaged protein Nitroreductase PF00881.24 gi|344211389|ref|YP_004795709.1| - 2.5e-32 112.3 0.0 2.9e-32 112.1 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|344211389|ref|YP_004795709.1| - 3.8e-05 23.4 0.0 0.36 10.3 0.1 2.8 2 1 1 3 3 3 3 Putative TM nitroreductase DUF87 PF01935.17 gi|344211390|ref|YP_004795710.1| - 4.9e-13 49.7 6.0 5.9e-13 49.4 0.0 2.6 3 0 0 3 3 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|344211390|ref|YP_004795710.1| - 1.6e-05 23.7 0.3 0.001 17.8 0.0 2.5 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) CbiA PF01656.23 gi|344211390|ref|YP_004795710.1| - 0.0013 18.8 0.0 0.0031 17.6 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain JIP_LZII PF16471.5 gi|344211390|ref|YP_004795710.1| - 0.0026 17.9 5.9 0.0077 16.4 5.9 1.8 1 0 0 1 1 1 1 JNK-interacting protein leucine zipper II UPF0242 PF06785.11 gi|344211390|ref|YP_004795710.1| - 0.0034 17.5 1.2 0.0069 16.5 1.2 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF4763 PF15960.5 gi|344211390|ref|YP_004795710.1| - 0.004 16.5 1.3 0.0094 15.3 1.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4763) AAA PF00004.29 gi|344211390|ref|YP_004795710.1| - 0.0088 16.5 1.0 0.17 12.3 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HMMR_N PF15905.5 gi|344211390|ref|YP_004795710.1| - 0.013 15.0 5.8 0.024 14.1 5.8 1.4 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal TMF_DNA_bd PF12329.8 gi|344211390|ref|YP_004795710.1| - 0.014 15.4 6.2 0.053 13.5 6.2 2.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding APS_kinase PF01583.20 gi|344211390|ref|YP_004795710.1| - 0.015 15.2 0.2 0.056 13.3 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_10 PF12846.7 gi|344211390|ref|YP_004795710.1| - 0.018 14.0 2.6 0.06 12.3 0.1 2.5 2 1 1 3 3 3 0 AAA-like domain FTA4 PF13093.6 gi|344211390|ref|YP_004795710.1| - 0.02 14.8 0.4 0.02 14.8 0.4 2.3 3 0 0 3 3 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 AAA_18 PF13238.6 gi|344211390|ref|YP_004795710.1| - 0.026 15.1 0.6 0.086 13.4 0.0 2.2 2 0 0 2 2 1 0 AAA domain AAA_16 PF13191.6 gi|344211390|ref|YP_004795710.1| - 0.027 14.9 0.1 0.027 14.9 0.1 3.1 3 1 0 3 3 3 0 AAA ATPase domain EzrA PF06160.12 gi|344211390|ref|YP_004795710.1| - 0.028 12.6 3.0 0.05 11.8 3.0 1.3 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Fib_alpha PF08702.10 gi|344211390|ref|YP_004795710.1| - 0.057 13.6 0.4 0.13 12.4 0.4 1.7 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Med9 PF07544.13 gi|344211390|ref|YP_004795710.1| - 0.064 13.3 3.2 0.16 12.1 3.2 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 TrwB_AAD_bind PF10412.9 gi|344211390|ref|YP_004795710.1| - 0.064 12.2 0.1 0.31 9.9 0.0 2.1 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain SKA1 PF07160.12 gi|344211390|ref|YP_004795710.1| - 0.069 13.0 5.1 0.14 12.0 5.1 1.4 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 AAA_13 PF13166.6 gi|344211390|ref|YP_004795710.1| - 0.075 11.7 5.6 0.13 10.8 5.6 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344211390|ref|YP_004795710.1| - 0.085 12.7 0.5 1.8 8.5 0.0 2.3 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea zf-C4H2 PF10146.9 gi|344211390|ref|YP_004795710.1| - 0.13 12.6 1.0 0.24 11.7 1.0 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein Zot PF05707.12 gi|344211390|ref|YP_004795710.1| - 0.14 11.8 0.1 2 8.0 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_31 PF13614.6 gi|344211390|ref|YP_004795710.1| - 0.19 11.6 0.0 0.47 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3496 PF12001.8 gi|344211390|ref|YP_004795710.1| - 0.24 11.8 2.1 0.58 10.6 2.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) Atg14 PF10186.9 gi|344211390|ref|YP_004795710.1| - 0.38 9.8 1.6 0.61 9.1 1.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Hpr_kinase_C PF07475.12 gi|344211390|ref|YP_004795710.1| - 0.56 9.7 2.2 12 5.4 0.1 2.2 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF724 PF05266.14 gi|344211390|ref|YP_004795710.1| - 0.66 9.8 5.0 1.5 8.6 5.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF724) V_ATPase_I PF01496.19 gi|344211390|ref|YP_004795710.1| - 0.76 7.6 2.3 1.1 7.1 2.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc24 PF08286.11 gi|344211390|ref|YP_004795710.1| - 0.95 9.7 4.7 2.9 8.2 4.7 1.9 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 PKcGMP_CC PF16808.5 gi|344211390|ref|YP_004795710.1| - 1 9.3 5.2 5.3 7.0 5.2 2.3 1 1 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF3450 PF11932.8 gi|344211390|ref|YP_004795710.1| - 1.1 8.5 10.9 0.11 11.7 6.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DLP_helical PF18709.1 gi|344211390|ref|YP_004795710.1| - 1.6 7.8 7.2 0.51 9.5 2.3 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain CLZ PF16526.5 gi|344211390|ref|YP_004795710.1| - 1.7 9.0 8.1 3 8.2 4.1 3.0 3 0 0 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels RPW8 PF05659.11 gi|344211390|ref|YP_004795710.1| - 2.3 7.9 5.4 0.68 9.6 1.2 2.0 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DivIC PF04977.15 gi|344211390|ref|YP_004795710.1| - 2.9 7.7 7.8 2.8 7.8 5.7 2.1 2 0 0 2 2 1 0 Septum formation initiator DUF2203 PF09969.9 gi|344211390|ref|YP_004795710.1| - 7.7 7.3 7.4 3.9 8.2 2.3 2.9 3 0 0 3 3 2 0 Uncharacterized conserved protein (DUF2203) OAD_gamma PF04277.13 gi|344211390|ref|YP_004795710.1| - 8.9 7.0 6.5 31 5.3 6.5 2.0 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain AAA_22 PF13401.6 gi|344211390|ref|YP_004795710.1| - 9.7 6.5 6.8 7.9 6.8 0.3 3.2 3 2 0 3 3 3 0 AAA domain TIM PF00121.18 gi|344211391|ref|YP_004795711.1| - 4.3e-07 29.6 0.0 8.5e-07 28.6 0.0 1.5 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|344211391|ref|YP_004795711.1| - 0.0001 21.7 1.0 0.0001 21.7 1.0 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|344211391|ref|YP_004795711.1| - 0.0034 16.5 3.2 0.0075 15.3 3.2 1.5 1 0 0 1 1 1 1 FMN-dependent dehydrogenase HalX PF08663.10 gi|344211392|ref|YP_004795712.1| - 2.5e-14 53.3 9.0 2.5e-14 53.3 9.0 1.6 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.24 gi|344211392|ref|YP_004795712.1| - 5.2e-12 45.9 0.1 8.5e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain CorA PF01544.18 gi|344211392|ref|YP_004795712.1| - 0.0072 15.7 5.2 0.009 15.4 5.2 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF4140 PF13600.6 gi|344211392|ref|YP_004795712.1| - 1.3 9.6 5.0 2 8.9 3.0 2.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) HTH_3 PF01381.22 gi|344211393|ref|YP_004795713.1| - 6.4e-10 38.9 1.7 8.8e-10 38.5 1.7 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|344211393|ref|YP_004795713.1| - 8.9e-08 32.4 0.1 1.4e-07 31.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|344211393|ref|YP_004795713.1| - 7.2e-07 29.1 0.4 1.2e-06 28.4 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|344211393|ref|YP_004795713.1| - 1.6e-05 24.6 0.4 2.5e-05 24.0 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain COPR5 PF15340.6 gi|344211393|ref|YP_004795713.1| - 0.015 15.9 0.7 0.022 15.4 0.7 1.2 1 0 0 1 1 1 0 Cooperator of PRMT5 family HTH_37 PF13744.6 gi|344211393|ref|YP_004795713.1| - 0.016 15.2 0.1 0.028 14.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Pox_A12 PF04651.13 gi|344211393|ref|YP_004795713.1| - 0.018 15.1 3.4 0.027 14.5 3.4 1.3 1 0 0 1 1 1 0 Poxvirus A12 protein HTH_38 PF13936.6 gi|344211393|ref|YP_004795713.1| - 0.06 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RAP1 PF07218.11 gi|344211393|ref|YP_004795713.1| - 0.073 11.3 5.4 0.083 11.2 5.4 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF1700 PF08006.11 gi|344211393|ref|YP_004795713.1| - 0.34 10.4 0.2 0.47 10.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) SR-25 PF10500.9 gi|344211393|ref|YP_004795713.1| - 0.46 10.0 22.4 0.36 10.4 21.5 1.4 1 1 0 1 1 1 0 Nuclear RNA-splicing-associated protein SelK_SelG PF10961.8 gi|344211393|ref|YP_004795713.1| - 0.7 10.5 5.6 0.27 11.9 2.7 1.8 2 0 0 2 2 2 0 Selenoprotein SelK_SelG Macoilin PF09726.9 gi|344211393|ref|YP_004795713.1| - 1.1 7.8 6.1 1.2 7.6 6.1 1.1 1 0 0 1 1 1 0 Macoilin family PI3K_1B_p101 PF10486.9 gi|344211393|ref|YP_004795713.1| - 4.2 5.0 12.1 9.7 3.8 11.9 1.5 1 1 1 2 2 2 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit Apt1 PF10351.9 gi|344211393|ref|YP_004795713.1| - 5.4 5.7 9.0 6.8 5.4 9.0 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain OrfB_Zn_ribbon PF07282.11 gi|344211394|ref|YP_004795714.1| - 7.3e-20 70.7 0.2 1.4e-19 69.7 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|344211394|ref|YP_004795714.1| - 4.4e-19 68.9 1.2 2e-18 66.8 0.2 2.1 2 0 0 2 2 2 1 Probable transposase HTH_OrfB_IS605 PF12323.8 gi|344211394|ref|YP_004795714.1| - 0.00073 19.0 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HypA PF01155.19 gi|344211394|ref|YP_004795714.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CDP-OH_P_transf PF01066.21 gi|344211395|ref|YP_004795715.1| - 9.6e-09 35.9 3.9 2.5e-08 34.6 0.5 2.5 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF1118 PF06549.12 gi|344211395|ref|YP_004795715.1| - 0.032 14.6 2.4 0.058 13.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1118) DUF4051 PF13260.6 gi|344211395|ref|YP_004795715.1| - 0.058 13.1 0.7 0.12 12.1 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) AAA_18 PF13238.6 gi|344211396|ref|YP_004795716.1| - 2.6e-22 79.7 0.1 3.7e-22 79.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|344211396|ref|YP_004795716.1| - 1.4e-07 32.0 0.5 0.0022 18.4 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|344211396|ref|YP_004795716.1| - 2.7e-06 27.6 0.7 0.054 13.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|344211396|ref|YP_004795716.1| - 2e-05 24.9 2.5 0.00051 20.3 0.2 2.2 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|344211396|ref|YP_004795716.1| - 4e-05 23.6 0.1 0.091 12.6 0.0 2.1 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|344211396|ref|YP_004795716.1| - 0.0027 18.0 0.0 0.0036 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|344211396|ref|YP_004795716.1| - 0.0082 16.3 0.1 0.65 10.1 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase CoaE PF01121.20 gi|344211396|ref|YP_004795716.1| - 0.0083 15.8 0.0 3.2 7.4 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase MeaB PF03308.16 gi|344211396|ref|YP_004795716.1| - 0.013 14.5 0.1 0.021 13.8 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|344211396|ref|YP_004795716.1| - 0.014 15.3 0.8 0.045 13.7 0.4 1.9 1 1 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|344211396|ref|YP_004795716.1| - 0.03 14.1 0.0 0.039 13.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|344211396|ref|YP_004795716.1| - 0.04 13.6 0.6 5.4 6.6 0.1 2.2 1 1 1 2 2 2 0 Thymidylate kinase AAA_16 PF13191.6 gi|344211396|ref|YP_004795716.1| - 0.077 13.4 1.0 0.33 11.3 1.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344211396|ref|YP_004795716.1| - 0.16 12.4 0.8 0.31 11.5 0.8 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|344211396|ref|YP_004795716.1| - 0.17 11.3 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Aminotran_1_2 PF00155.21 gi|344211397|ref|YP_004795717.1| - 1.6e-62 211.8 0.0 1.8e-62 211.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|344211397|ref|YP_004795717.1| - 4e-05 22.7 0.0 6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Allinase CheX PF13690.6 gi|344211398|ref|YP_004795718.1| - 1.6e-09 37.8 0.1 4.4e-09 36.4 0.1 1.7 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX CheC PF04509.12 gi|344211398|ref|YP_004795718.1| - 7.3e-09 35.4 2.3 1.2e-08 34.7 0.5 2.3 3 0 0 3 3 3 1 CheC-like family CopD PF05425.13 gi|344211399|ref|YP_004795719.1| - 0.00023 21.5 4.4 0.00023 21.5 4.4 2.0 2 0 0 2 2 2 1 Copper resistance protein D DUF3742 PF12553.8 gi|344211399|ref|YP_004795719.1| - 0.13 12.3 1.8 0.24 11.5 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) YdjM PF04307.14 gi|344211400|ref|YP_004795720.1| - 1.5e-08 34.2 6.7 2.4e-08 33.5 6.7 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase GMC_oxred_C PF05199.13 gi|344211401|ref|YP_004795721.1| - 9e-23 81.4 0.8 3.2e-22 79.6 0.8 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|344211401|ref|YP_004795721.1| - 4.3e-18 65.7 0.0 1e-17 64.5 0.0 1.6 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.24 gi|344211401|ref|YP_004795721.1| - 6.7e-09 35.8 5.2 8.1e-08 32.2 4.2 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|344211401|ref|YP_004795721.1| - 1.1e-08 34.6 1.4 0.0015 17.7 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|344211401|ref|YP_004795721.1| - 1.3e-06 28.0 0.6 5.9e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344211401|ref|YP_004795721.1| - 8e-06 26.0 0.0 2.1e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|344211401|ref|YP_004795721.1| - 1e-05 24.4 0.1 0.00012 20.9 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|344211401|ref|YP_004795721.1| - 0.00024 20.4 0.0 0.0019 17.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|344211401|ref|YP_004795721.1| - 0.00035 19.7 0.1 0.00055 19.1 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|344211401|ref|YP_004795721.1| - 0.011 15.1 1.2 0.018 14.4 1.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Fer4_7 PF12838.7 gi|344211401|ref|YP_004795721.1| - 0.022 15.3 0.9 0.044 14.4 0.9 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|344211401|ref|YP_004795721.1| - 0.027 15.0 0.0 0.61 10.7 0.0 2.7 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344211401|ref|YP_004795721.1| - 0.032 13.9 0.0 0.079 12.6 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|344211401|ref|YP_004795721.1| - 0.047 12.9 0.1 0.1 11.8 0.0 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|344211401|ref|YP_004795721.1| - 0.067 12.4 0.1 0.12 11.6 0.1 1.3 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.18 gi|344211401|ref|YP_004795721.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|344211401|ref|YP_004795721.1| - 0.13 12.3 0.0 0.36 10.9 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 gi|344211401|ref|YP_004795721.1| - 0.14 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Fer4_3 PF12798.7 gi|344211401|ref|YP_004795721.1| - 0.86 10.7 3.1 2.2 9.4 3.1 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain MttA_Hcf106 PF02416.16 gi|344211402|ref|YP_004795722.1| - 5.2e-15 54.5 0.0 5.3e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family DUF4148 PF13663.6 gi|344211402|ref|YP_004795722.1| - 0.013 15.6 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4148) DUF4834 PF16118.5 gi|344211402|ref|YP_004795722.1| - 0.09 13.7 0.0 0.11 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) AhpC-TSA PF00578.21 gi|344211404|ref|YP_004795724.1| - 1.6e-32 112.0 0.0 1.9e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344211404|ref|YP_004795724.1| - 2.8e-23 82.3 0.0 3.2e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|344211404|ref|YP_004795724.1| - 0.00019 21.5 0.0 0.0036 17.4 0.0 2.0 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|344211404|ref|YP_004795724.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HD PF01966.22 gi|344211405|ref|YP_004795725.1| - 3.8e-08 33.6 3.3 4.6e-08 33.3 2.3 1.6 2 0 0 2 2 2 1 HD domain zinc_ribbon_2 PF13240.6 gi|344211407|ref|YP_004795727.1| - 2.1e-05 24.0 3.3 2.6e-05 23.8 3.3 1.1 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|344211407|ref|YP_004795727.1| - 6.7e-05 22.1 2.3 7.8e-05 21.9 2.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|344211407|ref|YP_004795727.1| - 0.00012 22.0 1.5 0.00012 22.0 1.5 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|344211407|ref|YP_004795727.1| - 0.00024 21.2 1.9 0.00031 20.9 1.9 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|344211407|ref|YP_004795727.1| - 0.00038 20.4 1.4 0.00038 20.4 1.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|344211407|ref|YP_004795727.1| - 0.00071 20.3 1.6 0.00082 20.1 1.6 1.1 1 0 0 1 1 1 1 zinc-ribbon family Prok-RING_4 PF14447.6 gi|344211407|ref|YP_004795727.1| - 0.0048 16.7 0.6 0.0057 16.5 0.6 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 4 Zn-ribbon_8 PF09723.10 gi|344211407|ref|YP_004795727.1| - 0.0054 16.8 4.1 0.013 15.6 4.1 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|344211407|ref|YP_004795727.1| - 0.008 16.0 1.1 0.0092 15.8 1.1 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.7 gi|344211407|ref|YP_004795727.1| - 0.01 15.8 2.2 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C3HC4_2 PF13923.6 gi|344211407|ref|YP_004795727.1| - 0.018 14.9 1.5 0.018 14.9 1.5 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.6 gi|344211407|ref|YP_004795727.1| - 0.026 14.5 1.6 0.032 14.2 1.6 1.1 1 0 0 1 1 1 0 zinc-RING finger domain RNA_POL_M_15KD PF02150.16 gi|344211407|ref|YP_004795727.1| - 0.028 14.3 1.8 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.9 gi|344211407|ref|YP_004795727.1| - 0.032 14.3 2.7 0.049 13.7 2.7 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_4 PF13717.6 gi|344211407|ref|YP_004795727.1| - 0.039 13.9 2.0 1.8 8.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|344211407|ref|YP_004795727.1| - 0.042 13.5 4.1 1.7 8.4 1.0 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|344211407|ref|YP_004795727.1| - 0.042 13.7 4.2 0.1 12.5 4.2 1.7 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RecR PF02132.15 gi|344211407|ref|YP_004795727.1| - 0.044 13.4 2.3 0.052 13.1 2.3 1.2 1 0 0 1 1 1 0 RecR protein TF_Zn_Ribbon PF08271.12 gi|344211407|ref|YP_004795727.1| - 0.049 13.2 3.6 0.31 10.6 3.8 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2116 PF09889.9 gi|344211407|ref|YP_004795727.1| - 0.049 13.6 1.4 0.059 13.4 1.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FPG_IleRS PF06827.14 gi|344211407|ref|YP_004795727.1| - 0.057 13.3 5.8 0.83 9.6 5.9 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf_UBZ PF18439.1 gi|344211407|ref|YP_004795727.1| - 0.078 12.6 3.1 0.52 10.0 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_9 PF14369.6 gi|344211407|ref|YP_004795727.1| - 0.097 13.0 3.4 0.25 11.6 3.5 1.6 1 1 1 2 2 2 0 zinc-ribbon NRDD PF13597.6 gi|344211407|ref|YP_004795727.1| - 0.24 10.2 1.6 0.23 10.2 1.6 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.11 gi|344211407|ref|YP_004795727.1| - 0.27 11.2 5.8 3.7 7.5 1.0 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain YhfH PF14149.6 gi|344211407|ref|YP_004795727.1| - 0.27 11.2 3.9 3.4 7.7 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein CpXC PF14353.6 gi|344211407|ref|YP_004795727.1| - 0.3 11.1 2.4 3 7.9 0.2 2.0 1 1 1 2 2 2 0 CpXC protein DUF2688 PF10892.8 gi|344211407|ref|YP_004795727.1| - 0.37 10.3 4.8 0.25 10.9 2.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) zf-Mss51 PF13824.6 gi|344211407|ref|YP_004795727.1| - 0.43 10.7 3.5 1.6 8.9 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|344211407|ref|YP_004795727.1| - 0.5 10.5 3.1 7.7 6.7 0.5 2.1 1 1 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain tRNA_SAD PF07973.14 gi|344211408|ref|YP_004795728.1| - 1.4e-13 50.7 0.2 2.3e-13 50.0 0.2 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|344211408|ref|YP_004795728.1| - 2.8e-13 50.4 1.4 5.5e-13 49.5 1.1 1.7 2 0 0 2 2 2 1 DHHA1 domain tRNA-synt_2c PF01411.19 gi|344211408|ref|YP_004795728.1| - 1.5e-10 40.2 0.1 2e-10 39.8 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) CorA PF01544.18 gi|344211408|ref|YP_004795728.1| - 0.071 12.4 0.1 0.11 11.8 0.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein EamA PF00892.20 gi|344211409|ref|YP_004795729.1| - 4.3e-39 133.8 29.3 7.6e-20 71.5 11.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family SurE PF01975.17 gi|344211410|ref|YP_004795730.1| - 1.7e-44 152.0 0.4 2.1e-44 151.7 0.4 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_12 PF08242.12 gi|344211411|ref|YP_004795731.1| - 1.3e-07 32.2 0.1 4.1e-07 30.7 0.1 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344211411|ref|YP_004795731.1| - 2e-05 24.5 0.0 3.3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|344211411|ref|YP_004795731.1| - 0.0028 17.0 0.0 0.0053 16.1 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 PDH PF02153.17 gi|344211412|ref|YP_004795732.1| - 5.5e-16 58.3 1.2 5.5e-15 55.1 1.2 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|344211412|ref|YP_004795732.1| - 8.1e-06 26.3 3.9 9.8e-06 26.1 0.7 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|344211412|ref|YP_004795732.1| - 0.00025 21.9 0.5 0.00025 21.9 0.5 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|344211412|ref|YP_004795732.1| - 0.00041 20.5 0.5 0.00041 20.5 0.5 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|344211412|ref|YP_004795732.1| - 0.0036 17.6 1.6 0.038 14.3 0.2 2.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|344211412|ref|YP_004795732.1| - 0.011 15.7 0.7 0.011 15.7 0.7 2.4 2 1 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344211412|ref|YP_004795732.1| - 0.017 14.5 0.1 0.033 13.5 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|344211412|ref|YP_004795732.1| - 0.042 13.5 0.3 0.3 10.7 0.3 2.1 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|344211412|ref|YP_004795732.1| - 0.12 12.0 0.3 0.12 12.0 0.3 2.0 2 1 1 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|344211412|ref|YP_004795732.1| - 2.9 8.6 8.1 0.36 11.6 1.1 2.8 2 1 1 3 3 3 0 CoA binding domain FAA_hydrolase PF01557.18 gi|344211413|ref|YP_004795733.1| - 1.3e-66 224.4 0.0 1.7e-66 224.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|344211413|ref|YP_004795733.1| - 0.0025 18.7 0.2 0.0068 17.3 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) Copper-bind PF00127.20 gi|344211414|ref|YP_004795734.1| - 1.5e-22 79.9 0.0 9.6e-13 48.4 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family HTH_20 PF12840.7 gi|344211415|ref|YP_004795735.1| - 2.9e-13 49.7 0.3 4e-13 49.2 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|344211415|ref|YP_004795735.1| - 0.00027 20.7 0.0 0.00038 20.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344211415|ref|YP_004795735.1| - 0.0028 17.4 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344211415|ref|YP_004795735.1| - 0.0036 17.1 0.0 0.0056 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Rio2_N PF09202.11 gi|344211415|ref|YP_004795735.1| - 0.17 12.1 0.0 0.24 11.6 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal Copper-bind PF00127.20 gi|344211417|ref|YP_004795737.1| - 3.7e-17 62.6 0.1 1.2e-16 60.9 0.1 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|344211417|ref|YP_004795737.1| - 6.9e-06 25.7 1.9 6.9e-06 25.7 1.9 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DPRP PF04244.13 gi|344211418|ref|YP_004795738.1| - 5.7e-57 193.1 0.0 9e-57 192.5 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein ABC1 PF03109.16 gi|344211419|ref|YP_004795739.1| - 4e-26 91.5 0.0 1e-25 90.2 0.0 1.7 1 0 0 1 1 1 1 ABC1 family APH PF01636.23 gi|344211419|ref|YP_004795739.1| - 0.00021 21.3 0.5 0.0012 18.8 0.5 2.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Gram_pos_anchor PF00746.21 gi|344211419|ref|YP_004795739.1| - 0.27 11.2 1.2 0.55 10.2 1.2 1.4 1 0 0 1 1 1 0 LPXTG cell wall anchor motif E1-E2_ATPase PF00122.20 gi|344211420|ref|YP_004795740.1| - 2.9e-49 167.1 2.4 7e-49 165.8 2.4 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|344211420|ref|YP_004795740.1| - 1.2e-44 153.1 9.0 1.3e-44 153.1 7.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|344211420|ref|YP_004795740.1| - 1.1e-26 93.0 0.4 5.6e-14 52.3 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|344211420|ref|YP_004795740.1| - 4.4e-06 26.6 0.7 0.0048 16.7 1.2 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344211420|ref|YP_004795740.1| - 0.0024 18.3 0.6 0.016 15.6 0.6 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DNAPolymera_Pol PF11590.8 gi|344211420|ref|YP_004795740.1| - 0.14 12.0 0.6 1.5 8.7 0.6 2.7 1 1 0 1 1 1 0 DNA polymerase catalytic subunit Pol HTH_24 PF13412.6 gi|344211421|ref|YP_004795741.1| - 7.9e-16 57.4 0.1 1.3e-15 56.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344211421|ref|YP_004795741.1| - 9.1e-15 54.2 3.3 9.1e-15 54.2 3.3 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|344211421|ref|YP_004795741.1| - 8.4e-08 32.0 1.3 1.4e-06 28.1 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.7 gi|344211421|ref|YP_004795741.1| - 1.1e-05 25.3 0.1 2.8e-05 24.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|344211421|ref|YP_004795741.1| - 2.3e-05 24.2 0.0 3.5e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344211421|ref|YP_004795741.1| - 5.7e-05 22.9 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344211421|ref|YP_004795741.1| - 7.6e-05 22.5 0.0 0.00026 20.8 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Ta0938 PF11494.8 gi|344211421|ref|YP_004795741.1| - 0.00012 22.3 0.7 0.00019 21.6 0.7 1.3 1 0 0 1 1 1 1 Ta0938 HTH_27 PF13463.6 gi|344211421|ref|YP_004795741.1| - 0.00028 21.3 0.1 0.0012 19.2 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|344211421|ref|YP_004795741.1| - 0.00077 18.8 0.2 0.004 16.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 YHS PF04945.13 gi|344211421|ref|YP_004795741.1| - 0.0013 18.8 2.2 0.0023 18.0 2.2 1.3 1 0 0 1 1 1 1 YHS domain HTH_IclR PF09339.10 gi|344211421|ref|YP_004795741.1| - 0.0014 18.4 0.0 0.0038 17.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|344211421|ref|YP_004795741.1| - 0.0033 17.6 0.0 0.0096 16.1 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|344211421|ref|YP_004795741.1| - 0.009 15.8 0.0 0.026 14.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain Arc_trans_TRASH PF08394.10 gi|344211421|ref|YP_004795741.1| - 0.047 14.0 2.8 0.08 13.3 2.8 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain Sigma70_r4 PF04545.16 gi|344211421|ref|YP_004795741.1| - 0.061 12.8 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 ATPase-cat_bd PF12156.8 gi|344211421|ref|YP_004795741.1| - 0.095 13.5 2.4 0.18 12.6 2.4 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_28 PF13518.6 gi|344211421|ref|YP_004795741.1| - 0.13 12.4 0.0 0.43 10.7 0.0 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain Shisa PF13908.6 gi|344211421|ref|YP_004795741.1| - 0.4 10.9 4.4 0.57 10.4 4.4 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator ZnuA PF01297.17 gi|344211422|ref|YP_004795742.1| - 1.1e-41 142.9 0.0 1.4e-41 142.6 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|344211423|ref|YP_004795743.1| - 9.7e-30 103.9 0.0 1.6e-29 103.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211423|ref|YP_004795743.1| - 3.1e-11 43.6 0.3 3.1e-05 24.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211423|ref|YP_004795743.1| - 7.2e-05 22.3 0.0 0.0091 15.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344211423|ref|YP_004795743.1| - 0.00013 21.6 0.0 0.00031 20.4 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344211423|ref|YP_004795743.1| - 0.0004 20.8 0.3 0.001 19.5 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|344211423|ref|YP_004795743.1| - 0.00086 19.1 0.0 0.0012 18.7 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|344211423|ref|YP_004795743.1| - 0.0011 18.7 0.7 0.0052 16.5 0.7 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344211423|ref|YP_004795743.1| - 0.0038 17.5 0.1 0.014 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|344211423|ref|YP_004795743.1| - 0.0059 16.7 0.0 0.011 15.9 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|344211423|ref|YP_004795743.1| - 0.0099 16.4 0.0 0.016 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|344211423|ref|YP_004795743.1| - 0.03 14.3 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|344211423|ref|YP_004795743.1| - 0.032 14.1 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|344211423|ref|YP_004795743.1| - 0.033 14.4 0.1 0.061 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|344211423|ref|YP_004795743.1| - 0.033 14.3 0.0 0.06 13.4 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Mg_chelatase PF01078.21 gi|344211423|ref|YP_004795743.1| - 0.034 13.5 0.0 0.17 11.2 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|344211423|ref|YP_004795743.1| - 0.036 14.3 0.2 0.91 9.8 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.9 gi|344211423|ref|YP_004795743.1| - 0.051 12.4 0.1 9.6 4.9 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.15 gi|344211423|ref|YP_004795743.1| - 0.053 13.4 0.0 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|344211423|ref|YP_004795743.1| - 0.059 12.9 0.3 0.19 11.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|344211423|ref|YP_004795743.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|344211423|ref|YP_004795743.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|344211423|ref|YP_004795743.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|344211423|ref|YP_004795743.1| - 0.22 11.9 0.0 0.47 10.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Spore_IV_A PF09547.10 gi|344211423|ref|YP_004795743.1| - 0.24 10.3 0.0 0.35 9.8 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) ABC-3 PF00950.17 gi|344211424|ref|YP_004795744.1| - 4e-60 203.5 40.7 4.7e-60 203.3 40.7 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|344211424|ref|YP_004795744.1| - 8.9e-05 21.6 38.6 8.9e-05 21.6 38.6 1.6 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.6 gi|344211424|ref|YP_004795744.1| - 0.11 12.6 0.3 0.34 11.1 0.3 1.8 1 0 0 1 1 1 0 DUF2407 C-terminal domain FixG_C PF11614.8 gi|344211425|ref|YP_004795745.1| - 0.16 12.2 0.5 0.24 11.6 0.5 1.3 1 1 0 1 1 1 0 IG-like fold at C-terminal of FixG, putative oxidoreductase UPF0016 PF01169.19 gi|344211426|ref|YP_004795746.1| - 4.9e-26 90.8 19.4 4e-17 62.3 3.8 3.0 2 1 1 3 3 3 2 Uncharacterized protein family UPF0016 Fe_dep_repr_C PF02742.15 gi|344211427|ref|YP_004795747.1| - 3.4e-30 103.9 1.6 5.8e-30 103.2 1.6 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|344211427|ref|YP_004795747.1| - 4.6e-18 65.2 0.1 2.1e-17 63.0 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|344211427|ref|YP_004795747.1| - 7e-16 58.2 0.9 1.7e-15 57.0 0.1 2.0 2 1 1 3 3 3 1 FeoA domain MarR_2 PF12802.7 gi|344211427|ref|YP_004795747.1| - 2.3e-08 33.8 0.0 5.8e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344211427|ref|YP_004795747.1| - 2e-07 30.8 0.0 4.8e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|344211427|ref|YP_004795747.1| - 2.2e-05 24.2 0.0 5.4e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|344211427|ref|YP_004795747.1| - 4.9e-05 23.7 0.1 0.00014 22.3 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|344211427|ref|YP_004795747.1| - 0.00012 21.9 0.0 0.00031 20.7 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|344211427|ref|YP_004795747.1| - 0.00016 21.2 0.0 0.00067 19.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344211427|ref|YP_004795747.1| - 0.0017 18.1 0.1 0.015 15.1 0.0 2.4 2 1 1 3 3 3 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|344211427|ref|YP_004795747.1| - 0.0019 18.2 0.0 0.004 17.2 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|344211427|ref|YP_004795747.1| - 0.0052 16.4 0.0 0.042 13.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Topoisom_bac PF01131.20 gi|344211427|ref|YP_004795747.1| - 0.0076 15.3 0.1 0.01 14.9 0.1 1.1 1 0 0 1 1 1 1 DNA topoisomerase HTH_20 PF12840.7 gi|344211427|ref|YP_004795747.1| - 0.021 14.9 0.0 0.058 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|344211427|ref|YP_004795747.1| - 0.069 13.5 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_13 PF11972.8 gi|344211427|ref|YP_004795747.1| - 0.095 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF4423 PF14394.6 gi|344211427|ref|YP_004795747.1| - 0.2 11.4 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) BatA PF07584.11 gi|344211428|ref|YP_004795748.1| - 0.032 14.6 0.5 0.036 14.4 0.5 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal FixS PF03597.15 gi|344211428|ref|YP_004795748.1| - 0.042 13.6 0.6 0.05 13.3 0.6 1.2 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Papilloma_E5A PF05776.12 gi|344211428|ref|YP_004795748.1| - 0.078 13.4 0.0 0.078 13.4 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus E5A protein UPF0767 PF15990.5 gi|344211428|ref|YP_004795748.1| - 0.15 12.2 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 UPF0767 family MTH865 PF07747.11 gi|344211429|ref|YP_004795749.1| - 7.5e-29 99.3 0.2 8.6e-29 99.1 0.2 1.0 1 0 0 1 1 1 1 MTH865-like family DUF2909 PF11137.8 gi|344211430|ref|YP_004795750.1| - 0.054 13.4 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2909) DUF3989 PF13150.6 gi|344211430|ref|YP_004795750.1| - 0.081 12.7 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3989) zinc_ribbon_13 PF09855.9 gi|344211431|ref|YP_004795751.1| - 3.3e-27 94.4 0.4 3.7e-27 94.3 0.4 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.6 gi|344211431|ref|YP_004795751.1| - 0.00094 18.5 3.8 0.36 10.3 0.6 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|344211431|ref|YP_004795751.1| - 0.0015 18.4 1.5 0.87 9.6 0.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|344211431|ref|YP_004795751.1| - 0.0033 17.7 0.7 0.0054 17.1 0.7 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|344211431|ref|YP_004795751.1| - 0.0038 16.9 3.2 1 9.2 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|344211431|ref|YP_004795751.1| - 0.0048 16.4 0.8 1.3 8.6 0.2 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|344211431|ref|YP_004795751.1| - 0.013 15.5 0.2 0.019 15.0 0.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|344211431|ref|YP_004795751.1| - 0.014 15.0 0.9 0.46 10.2 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.10 gi|344211431|ref|YP_004795751.1| - 0.021 14.9 1.1 0.24 11.6 0.9 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS91 PF14319.6 gi|344211431|ref|YP_004795751.1| - 0.03 14.4 0.3 2 8.5 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain CpXC PF14353.6 gi|344211431|ref|YP_004795751.1| - 0.037 14.1 2.4 0.24 11.4 2.4 1.9 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|344211431|ref|YP_004795751.1| - 0.042 13.8 1.4 0.36 10.8 1.4 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|344211431|ref|YP_004795751.1| - 0.046 13.1 0.5 0.25 10.7 0.5 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|344211431|ref|YP_004795751.1| - 0.051 13.7 0.9 3.4 7.8 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|344211431|ref|YP_004795751.1| - 0.059 13.2 1.0 9.3 6.1 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2_3 PF13878.6 gi|344211431|ref|YP_004795751.1| - 0.075 12.9 2.1 1.3 8.9 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Spt4 PF06093.13 gi|344211431|ref|YP_004795751.1| - 0.13 12.4 0.9 2.3 8.4 0.1 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger DUF2225 PF09986.9 gi|344211431|ref|YP_004795751.1| - 0.14 11.9 1.2 0.3 10.8 1.2 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) TFIIS_C PF01096.18 gi|344211431|ref|YP_004795751.1| - 0.15 11.9 4.1 5.7 6.9 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|344211431|ref|YP_004795751.1| - 0.21 11.5 4.4 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|344211431|ref|YP_004795751.1| - 0.27 11.3 2.8 5 7.3 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DJ-1_PfpI PF01965.24 gi|344211432|ref|YP_004795752.1| - 4.8e-52 176.1 0.0 5.5e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|344211432|ref|YP_004795752.1| - 0.0028 17.5 0.0 0.0043 16.8 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|344211432|ref|YP_004795752.1| - 0.0067 16.0 0.0 0.0093 15.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain ThiJ_like PF17124.5 gi|344211432|ref|YP_004795752.1| - 0.0074 16.0 0.0 0.039 13.7 0.0 1.9 1 1 1 2 2 2 1 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|344211432|ref|YP_004795752.1| - 0.04 13.0 0.0 0.061 12.4 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Catalase_C PF18011.1 gi|344211432|ref|YP_004795752.1| - 0.16 11.6 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain found in long catalases Hydrolase_like PF13242.6 gi|344211433|ref|YP_004795753.1| - 9.3e-23 80.1 0.1 3e-22 78.5 0.0 1.9 3 0 0 3 3 3 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|344211433|ref|YP_004795753.1| - 1.3e-22 79.8 0.0 2.6e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344211433|ref|YP_004795753.1| - 7.4e-09 36.2 0.2 3.3e-08 34.1 0.2 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344211433|ref|YP_004795753.1| - 4.2e-06 27.0 0.0 3.2e-05 24.1 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|344211433|ref|YP_004795753.1| - 0.00015 21.4 0.1 0.00047 19.8 0.1 1.8 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|344211433|ref|YP_004795753.1| - 0.006 16.3 0.0 0.1 12.3 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Bse634I PF07832.11 gi|344211433|ref|YP_004795753.1| - 0.041 13.2 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Cfr10I/Bse634I restriction endonuclease Response_reg PF00072.24 gi|344211434|ref|YP_004795754.1| - 3.2e-23 82.0 0.0 6.7e-23 81.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|344211434|ref|YP_004795754.1| - 1.5e-15 56.9 0.1 5.2e-15 55.2 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|344211434|ref|YP_004795754.1| - 2.8e-13 50.4 0.1 4.9e-13 49.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|344211434|ref|YP_004795754.1| - 2.4e-12 47.1 0.1 8.9e-12 45.2 0.1 2.0 1 1 1 2 2 2 1 PAS fold PAS PF00989.25 gi|344211434|ref|YP_004795754.1| - 2e-07 31.0 0.0 6.4e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|344211434|ref|YP_004795754.1| - 6.8e-07 29.5 0.0 2.2e-06 27.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|344211434|ref|YP_004795754.1| - 2.4e-06 27.4 0.0 3.9e-05 23.6 0.0 2.7 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|344211434|ref|YP_004795754.1| - 0.00095 19.4 0.0 0.0038 17.5 0.0 2.1 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_5 PF14501.6 gi|344211434|ref|YP_004795754.1| - 0.036 14.0 0.0 0.19 11.7 0.0 2.1 2 0 0 2 2 2 0 GHKL domain B12-binding PF02310.19 gi|344211434|ref|YP_004795754.1| - 0.057 13.5 0.0 0.91 9.6 0.0 2.4 2 0 0 2 2 2 0 B12 binding domain GLTP PF08718.11 gi|344211434|ref|YP_004795754.1| - 0.1 12.9 0.1 0.29 11.4 0.1 1.7 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) DUF2071 PF09844.9 gi|344211435|ref|YP_004795755.1| - 3.1e-31 108.7 0.0 3.5e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) DUF2071 PF09844.9 gi|344211436|ref|YP_004795756.1| - 4.4e-75 251.9 0.0 4.9e-75 251.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|344211436|ref|YP_004795756.1| - 0.00013 21.7 0.0 0.00017 21.2 0.0 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Macro PF01661.21 gi|344211437|ref|YP_004795757.1| - 2.9e-29 101.5 0.1 3.6e-29 101.2 0.1 1.1 1 0 0 1 1 1 1 Macro domain Cation_ATPase_C PF00689.21 gi|344211438|ref|YP_004795758.1| - 0.38 10.5 4.5 0.44 10.2 4.5 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus Aldo_ket_red PF00248.21 gi|344211439|ref|YP_004795759.1| - 1.5e-69 234.4 0.0 1.7e-69 234.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family B12-binding PF02310.19 gi|344211439|ref|YP_004795759.1| - 0.054 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain NicO PF03824.16 gi|344211440|ref|YP_004795760.1| - 3.9e-08 33.0 7.1 3.9e-08 33.0 7.1 1.9 2 0 0 2 2 2 1 High-affinity nickel-transport protein FUSC_2 PF13515.6 gi|344211440|ref|YP_004795760.1| - 6.9 6.8 18.2 1.7 8.8 5.6 2.6 2 1 0 2 2 2 0 Fusaric acid resistance protein-like NikR_C PF08753.11 gi|344211441|ref|YP_004795761.1| - 3.9e-16 59.0 0.1 5.9e-16 58.4 0.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|344211441|ref|YP_004795761.1| - 0.0014 18.4 0.5 0.0028 17.5 0.5 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|344211441|ref|YP_004795761.1| - 0.011 15.7 0.0 0.026 14.4 0.0 1.7 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB ABC2_membrane_3 PF12698.7 gi|344211442|ref|YP_004795762.1| - 1.3e-19 70.5 0.0 1.8e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|344211442|ref|YP_004795762.1| - 2.2e-11 43.6 4.4 2.9e-11 43.2 4.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|344211442|ref|YP_004795762.1| - 1.1e-07 31.4 7.4 1.1e-07 31.4 7.4 2.1 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|344211442|ref|YP_004795762.1| - 0.0023 17.5 3.2 0.0023 17.5 3.2 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|344211442|ref|YP_004795762.1| - 0.0037 17.2 8.2 0.0037 17.2 8.2 2.2 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF4131 PF13567.6 gi|344211442|ref|YP_004795762.1| - 5.2 6.7 7.4 8.4 6.0 2.5 2.7 2 2 0 2 2 2 0 Domain of unknown function (DUF4131) ABC2_membrane_5 PF13346.6 gi|344211443|ref|YP_004795763.1| - 4.9 6.6 17.0 1.1 8.8 8.8 2.5 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|344211444|ref|YP_004795764.1| - 6e-29 101.3 0.0 1.1e-28 100.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211444|ref|YP_004795764.1| - 1.7e-12 47.8 0.0 1e-05 25.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|344211444|ref|YP_004795764.1| - 0.00056 19.6 0.0 0.0014 18.3 0.0 1.6 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|344211444|ref|YP_004795764.1| - 0.00086 19.9 0.5 0.0011 19.5 0.5 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|344211444|ref|YP_004795764.1| - 0.001 19.7 0.3 0.018 15.8 0.1 2.7 2 1 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|344211444|ref|YP_004795764.1| - 0.0032 17.2 0.1 0.0077 16.0 0.1 1.8 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|344211444|ref|YP_004795764.1| - 0.006 16.3 0.0 0.038 13.7 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344211444|ref|YP_004795764.1| - 0.0078 15.9 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|344211444|ref|YP_004795764.1| - 0.008 16.4 0.2 0.039 14.2 0.1 2.2 1 1 2 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|344211444|ref|YP_004795764.1| - 0.03 14.1 0.1 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|344211444|ref|YP_004795764.1| - 0.084 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|344211444|ref|YP_004795764.1| - 0.086 13.0 0.0 0.31 11.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|344211444|ref|YP_004795764.1| - 0.13 12.3 0.0 7.7 6.6 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|344211444|ref|YP_004795764.1| - 0.17 12.1 2.0 0.28 11.4 0.1 2.2 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|344211444|ref|YP_004795764.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|344211444|ref|YP_004795764.1| - 0.2 12.1 0.4 0.37 11.2 0.4 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Polyketide_cyc2 PF10604.9 gi|344211445|ref|YP_004795765.1| - 1.1e-07 32.2 3.8 1.6e-07 31.7 3.8 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|344211445|ref|YP_004795765.1| - 0.00024 21.3 0.3 0.00031 20.9 0.3 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|344211445|ref|YP_004795765.1| - 0.069 13.4 0.7 0.28 11.4 0.6 2.0 2 0 0 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein DUF3931 PF13082.6 gi|344211445|ref|YP_004795765.1| - 0.083 13.1 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) HATPase_c PF02518.26 gi|344211446|ref|YP_004795766.1| - 6.2e-16 58.9 0.1 1.1e-15 58.2 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211446|ref|YP_004795766.1| - 5.3e-12 45.6 1.8 5.3e-12 45.6 1.8 2.8 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|344211446|ref|YP_004795766.1| - 1.8e-06 27.7 0.6 4.5e-06 26.3 0.6 1.6 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|344211446|ref|YP_004795766.1| - 7.5e-05 22.7 0.7 0.00045 20.2 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain DUF418 PF04235.12 gi|344211446|ref|YP_004795766.1| - 0.0088 16.0 0.4 0.015 15.2 0.3 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF418) SPOB_a PF14689.6 gi|344211446|ref|YP_004795766.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Phage_holin_3_6 PF07332.11 gi|344211446|ref|YP_004795766.1| - 1.1 9.3 0.0 1.1 9.3 0.0 2.4 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III zf-C2H2_jaz PF12171.8 gi|344211447|ref|YP_004795767.1| - 0.0014 18.8 0.7 0.11 12.8 0.0 2.3 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.6 gi|344211447|ref|YP_004795767.1| - 0.006 16.5 0.9 0.015 15.1 0.9 1.8 1 1 0 1 1 1 1 zinc-finger of a C2HC-type Zn_ribbon_recom PF13408.6 gi|344211447|ref|YP_004795767.1| - 0.013 16.0 0.2 0.013 16.0 0.2 1.9 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain HNH_5 PF14279.6 gi|344211447|ref|YP_004795767.1| - 0.021 14.7 1.6 3.6 7.5 0.2 2.2 1 1 1 2 2 2 0 HNH endonuclease DZR PF12773.7 gi|344211447|ref|YP_004795767.1| - 0.032 14.2 5.7 0.19 11.7 5.9 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_11 PF16622.5 gi|344211447|ref|YP_004795767.1| - 0.042 13.6 1.4 1.6 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-finger C2H2-type DNA_ligase_ZBD PF03119.16 gi|344211447|ref|YP_004795767.1| - 0.086 12.9 1.9 0.3 11.2 2.1 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.26 gi|344211447|ref|YP_004795767.1| - 0.14 12.6 9.7 0.62 10.6 1.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|344211447|ref|YP_004795767.1| - 0.33 11.9 8.1 3.1 8.9 1.1 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C2H2_6 PF13912.6 gi|344211447|ref|YP_004795767.1| - 0.44 10.6 8.5 0.7 10.0 0.7 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger HypA PF01155.19 gi|344211447|ref|YP_004795767.1| - 0.5 10.4 5.3 0.44 10.6 1.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|344211447|ref|YP_004795767.1| - 0.66 10.5 5.3 7.1 7.2 0.2 3.1 3 0 0 3 3 3 0 Zinc-finger double domain zinc_ribbon_10 PF10058.9 gi|344211447|ref|YP_004795767.1| - 0.78 9.5 5.4 1.4 8.7 1.9 2.3 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-LITAF-like PF10601.9 gi|344211447|ref|YP_004795767.1| - 0.89 9.9 6.7 5.4 7.4 0.1 2.4 3 0 0 3 3 2 0 LITAF-like zinc ribbon domain Trm112p PF03966.16 gi|344211447|ref|YP_004795767.1| - 1.2 9.7 5.5 3 8.5 0.4 2.2 1 1 1 2 2 2 0 Trm112p-like protein zf_UBZ PF18439.1 gi|344211447|ref|YP_004795767.1| - 1.5 8.5 6.0 3 7.5 0.1 2.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|344211447|ref|YP_004795767.1| - 3.5 7.8 10.1 2 8.6 2.7 2.7 1 1 1 3 3 3 0 Zinc ribbon domain HATPase_c PF02518.26 gi|344211448|ref|YP_004795768.1| - 1.6e-15 57.6 0.0 2.8e-15 56.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211448|ref|YP_004795768.1| - 1.8e-05 24.7 0.2 5.5e-05 23.1 0.0 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|344211448|ref|YP_004795768.1| - 4.1e-05 23.5 0.3 0.0001 22.3 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Response_reg PF00072.24 gi|344211448|ref|YP_004795768.1| - 7.2e-05 22.9 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_3 PF13589.6 gi|344211448|ref|YP_004795768.1| - 0.011 15.6 0.4 0.025 14.4 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.15 gi|344211448|ref|YP_004795768.1| - 0.027 14.8 0.4 0.051 13.9 0.0 1.7 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF3834 PF12916.7 gi|344211448|ref|YP_004795768.1| - 0.21 10.8 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) CoA_binding PF02629.19 gi|344211449|ref|YP_004795769.1| - 4.2e-23 81.8 0.8 4.2e-23 81.8 0.8 1.9 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|344211449|ref|YP_004795769.1| - 5e-13 49.1 0.6 1.1e-12 48.1 0.6 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|344211449|ref|YP_004795769.1| - 2e-09 37.4 0.0 3.7e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|344211449|ref|YP_004795769.1| - 8.9e-06 26.2 0.0 5.5e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|344211450|ref|YP_004795770.1| - 1.5e-65 220.5 0.8 2.4e-65 219.9 0.8 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|344211450|ref|YP_004795770.1| - 1.6e-21 76.8 4.0 1.6e-21 76.8 4.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|344211450|ref|YP_004795770.1| - 6.1e-14 52.0 1.8 1.1e-11 44.7 0.7 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.19 gi|344211450|ref|YP_004795770.1| - 2e-12 47.2 0.4 2e-12 47.2 0.4 2.1 3 0 0 3 3 3 1 CoA-ligase ATP-grasp PF02222.22 gi|344211450|ref|YP_004795770.1| - 6.8e-09 35.5 0.1 1.2e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|344211450|ref|YP_004795770.1| - 7.5e-07 29.1 0.5 1.6e-06 28.0 0.5 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|344211450|ref|YP_004795770.1| - 0.0053 16.3 1.0 0.0053 16.3 1.0 2.1 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|344211450|ref|YP_004795770.1| - 0.092 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain DUF4891 PF16232.5 gi|344211450|ref|YP_004795770.1| - 0.11 13.0 0.0 0.39 11.3 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4891) SIR2 PF02146.17 gi|344211451|ref|YP_004795771.1| - 2.5e-42 144.8 0.0 3.5e-42 144.3 0.0 1.2 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|344211451|ref|YP_004795771.1| - 0.00076 19.2 0.0 0.088 12.6 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain ATPgrasp_N PF18130.1 gi|344211451|ref|YP_004795771.1| - 0.088 13.4 0.6 1.5 9.4 0.0 2.7 3 0 0 3 3 3 0 ATP-grasp N-terminal domain DUF2863 PF11062.8 gi|344211451|ref|YP_004795771.1| - 0.12 10.8 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) PAS_4 PF08448.10 gi|344211452|ref|YP_004795772.1| - 0.004 17.4 0.0 0.0062 16.8 0.0 1.2 1 0 0 1 1 1 1 PAS fold Phytase PF02333.15 gi|344211452|ref|YP_004795772.1| - 0.12 11.3 0.1 0.21 10.5 0.0 1.4 1 1 0 1 1 1 0 Phytase T2SSE PF00437.20 gi|344211454|ref|YP_004795774.1| - 9.1e-48 162.7 0.0 1.3e-47 162.2 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein HTH_19 PF12844.7 gi|344211454|ref|YP_004795774.1| - 0.099 12.7 0.9 0.74 9.9 0.1 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain Mg_chelatase PF01078.21 gi|344211454|ref|YP_004795774.1| - 0.15 11.4 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|344211454|ref|YP_004795774.1| - 0.15 11.8 0.0 0.4 10.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|344211455|ref|YP_004795775.1| - 4.4e-37 126.8 12.1 2.7e-19 69.3 3.5 2.9 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|344211455|ref|YP_004795775.1| - 0.0028 16.5 1.1 1.3 7.8 0.0 3.3 3 0 0 3 3 3 2 Predicted membrane protein (DUF2207) DUF1129 PF06570.11 gi|344211455|ref|YP_004795775.1| - 0.026 14.0 2.6 0.55 9.7 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) 7TM_GPCR_Srw PF10324.9 gi|344211455|ref|YP_004795775.1| - 0.076 12.3 0.5 0.14 11.4 0.0 1.6 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srw E1-E2_ATPase PF00122.20 gi|344211455|ref|YP_004795775.1| - 0.092 12.3 3.7 0.28 10.7 0.3 2.8 2 0 0 2 2 2 0 E1-E2 ATPase DUF2721 PF11026.8 gi|344211455|ref|YP_004795775.1| - 1.8 8.5 18.2 0.051 13.5 0.7 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF2721) DUF2116 PF09889.9 gi|344211455|ref|YP_004795775.1| - 6.7 6.8 4.7 4.8 7.2 2.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DNA_ligase_A_M PF01068.21 gi|344211456|ref|YP_004795776.1| - 5.4e-47 160.1 0.0 7.5e-47 159.6 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|344211456|ref|YP_004795776.1| - 4.1e-34 118.4 0.0 7.8e-34 117.5 0.0 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|344211456|ref|YP_004795776.1| - 3.3e-17 62.9 0.1 2.9e-16 59.9 0.0 2.5 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|344211456|ref|YP_004795776.1| - 0.0011 19.3 0.0 0.0018 18.6 0.0 1.3 1 0 0 1 1 1 1 RNA ligase mRNA_cap_enzyme PF01331.19 gi|344211456|ref|YP_004795776.1| - 0.059 13.2 0.0 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.6 gi|344211456|ref|YP_004795776.1| - 0.098 12.7 0.1 0.45 10.6 0.1 2.1 1 1 0 1 1 1 0 DNA ligase OB-like domain Lactamase_B_3 PF13483.6 gi|344211457|ref|YP_004795777.1| - 3.5e-27 95.3 0.0 6.2e-27 94.5 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|344211457|ref|YP_004795777.1| - 0.0017 17.9 1.1 0.0027 17.3 1.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain 2TM PF13239.6 gi|344211458|ref|YP_004795778.1| - 0.93 9.8 3.9 1.4 9.3 0.3 2.1 1 1 1 2 2 2 0 2TM domain PQQ_2 PF13360.6 gi|344211459|ref|YP_004795779.1| - 7.3e-34 117.4 32.2 1.3e-16 61.0 5.9 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|344211459|ref|YP_004795779.1| - 9.4e-28 95.9 41.0 2.6e-05 24.5 0.6 9.2 9 0 0 9 9 9 9 PQQ-like domain PQQ PF01011.21 gi|344211459|ref|YP_004795779.1| - 8.9e-15 53.8 21.3 3e-05 23.7 0.5 8.3 9 0 0 9 9 9 6 PQQ enzyme repeat TP6A_N PF04406.14 gi|344211460|ref|YP_004795780.1| - 5e-15 55.2 0.4 8.5e-15 54.5 0.4 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|344211460|ref|YP_004795780.1| - 0.036 13.9 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Circularly permutated YpsA SLOG family Topo-VIb_trans PF09239.11 gi|344211461|ref|YP_004795781.1| - 2.3e-63 212.8 0.0 5.3e-63 211.6 0.0 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|344211461|ref|YP_004795781.1| - 2e-36 124.6 5.5 4.7e-36 123.4 5.5 1.7 1 0 0 1 1 1 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|344211461|ref|YP_004795781.1| - 1.1e-13 51.6 0.2 4.6e-13 49.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|344211461|ref|YP_004795781.1| - 7.7e-11 42.0 0.0 1.8e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344211461|ref|YP_004795781.1| - 0.0027 17.7 3.5 0.0055 16.7 0.0 2.8 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain Dynamin_M PF01031.20 gi|344211461|ref|YP_004795781.1| - 0.043 13.0 0.2 0.075 12.2 0.2 1.3 1 0 0 1 1 1 0 Dynamin central region MAF_flag10 PF01973.18 gi|344211461|ref|YP_004795781.1| - 0.089 12.5 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 HATPase_c_5 PF14501.6 gi|344211461|ref|YP_004795781.1| - 0.13 12.2 0.0 0.44 10.5 0.0 1.9 1 0 0 1 1 1 0 GHKL domain DNA_gyraseB PF00204.25 gi|344211462|ref|YP_004795782.1| - 5.8e-62 208.2 0.1 1.1e-61 207.3 0.1 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|344211462|ref|YP_004795782.1| - 2.6e-30 104.4 0.0 5.4e-30 103.4 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|344211462|ref|YP_004795782.1| - 2.7e-24 85.8 0.1 7e-24 84.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|344211462|ref|YP_004795782.1| - 9.8e-18 64.3 0.0 3.3e-17 62.6 0.0 2.0 2 0 0 2 2 2 1 Toprim domain HATPase_c_3 PF13589.6 gi|344211462|ref|YP_004795782.1| - 6.3e-05 22.8 0.0 0.00014 21.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.6 gi|344211462|ref|YP_004795782.1| - 0.11 12.9 0.0 0.31 11.6 0.0 1.7 1 0 0 1 1 1 0 Toprim domain DNA_topoisoIV PF00521.20 gi|344211463|ref|YP_004795783.1| - 5e-154 513.3 0.0 6.7e-154 512.9 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|344211463|ref|YP_004795783.1| - 1.4e-76 251.8 9.4 2.1e-14 52.7 0.0 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller NTase_sub_bind PF08780.11 gi|344211463|ref|YP_004795783.1| - 0.0054 16.7 0.2 0.014 15.4 0.2 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase substrate binding protein like Nnf1 PF03980.14 gi|344211463|ref|YP_004795783.1| - 0.038 14.4 2.0 1.9 8.9 1.7 2.5 2 0 0 2 2 2 0 Nnf1 NAD_binding_1 PF00175.21 gi|344211464|ref|YP_004795784.1| - 1.4e-12 48.3 0.0 5.5e-12 46.3 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|344211464|ref|YP_004795784.1| - 6.1e-11 42.5 0.0 1e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain Arginase PF00491.21 gi|344211465|ref|YP_004795785.1| - 3.5e-76 256.4 1.4 4e-76 256.2 1.4 1.0 1 0 0 1 1 1 1 Arginase family Epimerase PF01370.21 gi|344211466|ref|YP_004795786.1| - 2.4e-41 141.8 0.3 2.8e-41 141.6 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344211466|ref|YP_004795786.1| - 8.6e-39 133.9 0.5 1.4e-37 129.8 0.5 2.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|344211466|ref|YP_004795786.1| - 7e-11 41.7 0.2 9.2e-11 41.4 0.2 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|344211466|ref|YP_004795786.1| - 2e-10 40.1 0.9 1.1e-09 37.8 0.9 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|344211466|ref|YP_004795786.1| - 1.6e-09 37.3 0.1 3.3e-06 26.5 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|344211466|ref|YP_004795786.1| - 2.5e-07 30.1 0.2 7.7e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|344211466|ref|YP_004795786.1| - 0.096 12.1 1.0 0.45 9.9 0.1 2.2 1 1 1 2 2 2 0 short chain dehydrogenase KR PF08659.10 gi|344211466|ref|YP_004795786.1| - 0.16 11.8 0.1 4.6 7.1 0.1 2.2 2 0 0 2 2 2 0 KR domain HrcA_DNA-bdg PF03444.15 gi|344211467|ref|YP_004795787.1| - 2.4e-39 132.8 0.1 3.5e-39 132.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|344211467|ref|YP_004795787.1| - 2.2e-07 31.1 0.0 4.4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|344211467|ref|YP_004795787.1| - 3.3e-07 30.1 0.0 5e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|344211467|ref|YP_004795787.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Turandot PF07240.11 gi|344211467|ref|YP_004795787.1| - 0.059 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Stress-inducible humoral factor Turandot HTH_38 PF13936.6 gi|344211467|ref|YP_004795787.1| - 0.11 12.2 0.0 0.25 11.2 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain Rio2_N PF09202.11 gi|344211467|ref|YP_004795787.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal Pyr_redox_2 PF07992.14 gi|344211468|ref|YP_004795788.1| - 7.9e-39 133.6 0.2 9.5e-39 133.4 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344211468|ref|YP_004795788.1| - 6.9e-07 29.7 0.6 1e-05 26.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|344211468|ref|YP_004795788.1| - 0.083 12.9 0.8 15 5.5 0.1 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding PNP_UDP_1 PF01048.20 gi|344211469|ref|YP_004795789.1| - 5.7e-46 156.7 1.2 6.9e-46 156.4 1.2 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily DAO_C PF16901.5 gi|344211469|ref|YP_004795789.1| - 0.055 13.3 0.1 0.094 12.6 0.1 1.4 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase dCMP_cyt_deam_1 PF00383.23 gi|344211470|ref|YP_004795790.1| - 4e-15 55.5 0.0 4.5e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|344211470|ref|YP_004795790.1| - 2.7e-13 50.3 0.5 3.6e-13 49.9 0.5 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region PGM_PMM_I PF02878.16 gi|344211471|ref|YP_004795791.1| - 2.4e-32 111.5 0.1 5.4e-32 110.4 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|344211471|ref|YP_004795791.1| - 9.4e-22 77.6 0.4 2e-21 76.5 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|344211471|ref|YP_004795791.1| - 3.8e-13 49.4 0.0 1.9e-12 47.2 0.0 2.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|344211471|ref|YP_004795791.1| - 0.002 18.3 0.1 0.0052 17.0 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Methyltransf_21 PF05050.12 gi|344211472|ref|YP_004795792.1| - 4e-20 72.5 0.0 5.3e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|344211472|ref|YP_004795792.1| - 1.2e-05 24.8 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Met_10 PF02475.16 gi|344211472|ref|YP_004795792.1| - 0.026 14.3 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Proteasome PF00227.26 gi|344211473|ref|YP_004795793.1| - 1.9e-43 148.2 0.5 2.2e-43 148.0 0.5 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF555 PF04475.12 gi|344211475|ref|YP_004795795.1| - 1.4e-47 160.2 0.1 1.4e-47 160.2 0.1 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF555) CBS PF00571.28 gi|344211476|ref|YP_004795796.1| - 1.9e-20 73.1 0.7 2.3e-09 37.6 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|344211476|ref|YP_004795796.1| - 6e-12 45.4 0.1 2.4e-11 43.5 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|344211476|ref|YP_004795796.1| - 7e-12 45.5 1.5 1.3e-11 44.6 1.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|344211476|ref|YP_004795796.1| - 4.7e-07 29.7 0.1 7.5e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|344211476|ref|YP_004795796.1| - 0.00018 21.4 0.0 0.00034 20.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|344211476|ref|YP_004795796.1| - 0.00036 20.3 1.2 0.00042 20.1 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|344211476|ref|YP_004795796.1| - 0.0027 18.1 0.0 0.0058 17.1 0.0 1.6 2 0 0 2 2 1 1 Cro/C1-type HTH DNA-binding domain Pou PF00157.17 gi|344211476|ref|YP_004795796.1| - 0.075 13.0 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_24 PF13412.6 gi|344211476|ref|YP_004795796.1| - 0.078 12.5 0.2 0.73 9.4 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TetR_N PF00440.23 gi|344211476|ref|YP_004795796.1| - 0.19 11.6 0.0 4.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF3618 PF12277.8 gi|344211476|ref|YP_004795796.1| - 1.5 9.1 6.1 0.21 11.8 1.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) Sugarporin_N PF11471.8 gi|344211477|ref|YP_004795797.1| - 0.054 13.5 2.3 0.088 12.8 2.3 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension MutS_IV PF05190.18 gi|344211477|ref|YP_004795797.1| - 0.088 13.2 0.1 0.1 12.9 0.1 1.1 1 0 0 1 1 1 0 MutS family domain IV AIRS_C PF02769.22 gi|344211478|ref|YP_004795798.1| - 2.1e-24 86.4 0.0 3.3e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|344211478|ref|YP_004795798.1| - 3.5e-15 56.4 2.8 7.5e-15 55.4 2.7 1.6 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.22 gi|344211479|ref|YP_004795799.1| - 6.2e-05 22.4 14.3 0.035 13.4 8.2 2.7 1 1 1 2 2 2 2 Peptidase family M50 TraB PF01963.17 gi|344211480|ref|YP_004795800.1| - 1.9e-26 93.5 0.0 1.6e-15 57.7 0.0 2.1 2 0 0 2 2 2 2 TraB family PadR PF03551.14 gi|344211481|ref|YP_004795801.1| - 6.6e-17 61.2 0.8 8.2e-17 60.9 0.8 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|344211481|ref|YP_004795801.1| - 0.0032 17.4 0.1 0.0044 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|344211481|ref|YP_004795801.1| - 0.02 15.4 0.1 0.027 14.9 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|344211481|ref|YP_004795801.1| - 0.072 12.9 0.0 0.087 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|344211481|ref|YP_004795801.1| - 0.12 12.1 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) 4HBT PF03061.22 gi|344211482|ref|YP_004795802.1| - 5.4e-17 61.9 0.1 7.8e-17 61.4 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|344211482|ref|YP_004795802.1| - 0.022 15.2 0.0 0.027 15.0 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily AglB_L1 PF18079.1 gi|344211485|ref|YP_004795805.1| - 1e-21 77.0 7.2 2.5e-21 75.7 7.2 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|344211485|ref|YP_004795805.1| - 3.1e-19 69.3 25.2 3.1e-18 66.0 25.2 2.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Pollen_Ole_e_I PF01190.17 gi|344211485|ref|YP_004795805.1| - 0.073 13.5 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Pollen proteins Ole e I like Glycos_transf_2 PF00535.26 gi|344211486|ref|YP_004795806.1| - 4.8e-17 62.3 0.1 6.8e-17 61.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211486|ref|YP_004795806.1| - 1.6e-06 28.2 0.3 1.4e-05 25.1 0.2 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344211486|ref|YP_004795806.1| - 3.7e-05 23.3 1.3 0.0053 16.3 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|344211486|ref|YP_004795806.1| - 0.32 10.9 1.8 1 9.3 1.8 2.1 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Sulfatase PF00884.23 gi|344211487|ref|YP_004795807.1| - 6.3e-20 71.8 0.3 1.5e-19 70.6 0.4 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344211487|ref|YP_004795807.1| - 0.0032 17.1 0.0 0.013 15.1 0.0 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|344211487|ref|YP_004795807.1| - 0.042 13.2 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily LPG_synthase_TM PF03706.13 gi|344211488|ref|YP_004795808.1| - 5e-36 124.8 27.2 5.8e-36 124.6 27.2 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|344211489|ref|YP_004795809.1| - 2e-30 105.8 0.0 3.5e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211489|ref|YP_004795809.1| - 3.2e-09 37.0 0.0 4.5e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344211489|ref|YP_004795809.1| - 2.7e-08 33.6 0.0 3.8e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 ABC2_membrane_3 PF12698.7 gi|344211489|ref|YP_004795809.1| - 0.064 12.3 6.2 2.1 7.4 0.0 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Glyco_tranf_2_4 PF13704.6 gi|344211489|ref|YP_004795809.1| - 0.097 13.2 0.0 0.22 12.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 PMT_2 PF13231.6 gi|344211490|ref|YP_004795810.1| - 8.4e-19 68.3 9.6 8.4e-19 68.3 9.6 2.7 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|344211490|ref|YP_004795810.1| - 1e-11 44.9 9.7 1e-11 44.9 9.7 2.3 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase SLATT_3 PF18184.1 gi|344211490|ref|YP_004795810.1| - 0.061 13.5 0.3 0.23 11.6 0.3 2.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 DUF2723 PF11028.8 gi|344211490|ref|YP_004795810.1| - 0.74 9.7 9.2 0.16 11.9 4.8 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2723) Glycos_transf_1 PF00534.20 gi|344211491|ref|YP_004795811.1| - 9.4e-30 103.4 0.0 1.2e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211491|ref|YP_004795811.1| - 8.4e-28 97.5 0.0 1.7e-27 96.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|344211491|ref|YP_004795811.1| - 1.4e-09 38.3 0.0 3.2e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|344211491|ref|YP_004795811.1| - 0.00026 21.5 4.1 0.00026 21.5 4.1 1.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|344211491|ref|YP_004795811.1| - 0.18 11.8 0.0 0.28 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like Polysacc_synt_C PF14667.6 gi|344211492|ref|YP_004795812.1| - 6.1e-19 68.5 15.5 7.2e-19 68.3 15.5 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|344211492|ref|YP_004795812.1| - 0.0016 17.2 4.1 0.0021 16.7 4.1 1.1 1 0 0 1 1 1 1 Lipid II flippase MurJ DUF2070 PF09843.9 gi|344211492|ref|YP_004795812.1| - 0.45 8.7 5.8 0.5 8.6 5.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4231 PF14015.6 gi|344211492|ref|YP_004795812.1| - 5.1 7.6 5.9 7.3 7.1 5.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Glycos_transf_1 PF00534.20 gi|344211493|ref|YP_004795813.1| - 1.2e-43 148.6 0.0 1.6e-43 148.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211493|ref|YP_004795813.1| - 8.5e-36 123.3 0.0 1.1e-35 122.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|344211493|ref|YP_004795813.1| - 8.9e-16 58.1 0.0 2.4e-15 56.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344211493|ref|YP_004795813.1| - 0.0002 21.4 0.3 0.0009 19.3 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Mito_fiss_Elm1 PF06258.11 gi|344211493|ref|YP_004795813.1| - 0.046 12.9 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial fission ELM1 Phosphodiest PF01663.22 gi|344211494|ref|YP_004795814.1| - 1e-14 55.0 0.0 1.3e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|344211494|ref|YP_004795814.1| - 6.3e-06 25.7 0.1 9.4e-06 25.2 0.1 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|344211494|ref|YP_004795814.1| - 0.014 14.8 0.2 0.58 9.5 0.2 2.1 1 1 0 1 1 1 0 Sulfatase Sulfatase PF00884.23 gi|344211495|ref|YP_004795815.1| - 1.2e-33 116.9 0.0 1.6e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344211495|ref|YP_004795815.1| - 6.9e-11 42.3 0.0 8.6e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|344211495|ref|YP_004795815.1| - 5e-05 22.1 0.0 0.00011 21.0 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|344211495|ref|YP_004795815.1| - 0.0029 16.7 0.0 0.0045 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Metalloenzyme PF01676.18 gi|344211495|ref|YP_004795815.1| - 0.1 12.0 0.0 0.48 9.8 0.0 1.9 2 0 0 2 2 2 0 Metalloenzyme superfamily TrmB PF01978.19 gi|344211496|ref|YP_004795816.1| - 9e-19 67.1 0.0 1.8e-18 66.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344211496|ref|YP_004795816.1| - 0.00028 20.6 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344211496|ref|YP_004795816.1| - 0.0032 17.3 0.0 0.0083 16.0 0.0 1.7 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|344211496|ref|YP_004795816.1| - 0.063 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Regulator_TrmB PF11495.8 gi|344211496|ref|YP_004795816.1| - 0.088 12.0 0.0 0.24 10.5 0.0 1.6 1 1 1 2 2 2 0 Archaeal transcriptional regulator TrmB MarR PF01047.22 gi|344211496|ref|YP_004795816.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Glycos_transf_2 PF00535.26 gi|344211497|ref|YP_004795817.1| - 8e-17 61.6 0.0 1.3e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211497|ref|YP_004795817.1| - 2.2e-08 34.3 0.0 3.5e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|344211497|ref|YP_004795817.1| - 2e-05 25.0 0.0 3.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|344211497|ref|YP_004795817.1| - 8.8e-05 22.9 0.0 0.00018 21.9 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain SfLAP PF11139.8 gi|344211497|ref|YP_004795817.1| - 0.022 14.2 0.5 0.031 13.7 0.5 1.2 1 0 0 1 1 1 0 Sap, sulfolipid-1-addressing protein UPF0060 PF02694.15 gi|344211497|ref|YP_004795817.1| - 0.088 13.0 1.8 0.14 12.4 1.8 1.3 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family HLH PF00010.26 gi|344211498|ref|YP_004795818.1| - 0.034 14.1 0.1 0.061 13.3 0.1 1.4 1 0 0 1 1 1 0 Helix-loop-helix DNA-binding domain HxlR PF01638.17 gi|344211499|ref|YP_004795819.1| - 2.9e-22 78.3 0.0 3.7e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|344211499|ref|YP_004795819.1| - 2.3e-06 28.0 0.0 3.5e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|344211499|ref|YP_004795819.1| - 2.7e-05 24.3 0.0 3.6e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|344211499|ref|YP_004795819.1| - 0.00092 19.2 0.3 0.0013 18.7 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|344211499|ref|YP_004795819.1| - 0.0021 17.9 0.0 0.0035 17.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|344211499|ref|YP_004795819.1| - 0.0025 17.6 0.1 0.0036 17.2 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344211499|ref|YP_004795819.1| - 0.0027 17.5 0.0 0.0042 16.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|344211499|ref|YP_004795819.1| - 0.003 17.6 0.0 0.0036 17.4 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation PadR PF03551.14 gi|344211499|ref|YP_004795819.1| - 0.0033 17.4 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Trp_repressor PF01371.19 gi|344211499|ref|YP_004795819.1| - 0.0083 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Trp repressor protein HTH_45 PF14947.6 gi|344211499|ref|YP_004795819.1| - 0.013 15.5 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|344211499|ref|YP_004795819.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_43 PF09904.9 gi|344211499|ref|YP_004795819.1| - 0.085 12.8 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF505 PF04458.12 gi|344211499|ref|YP_004795819.1| - 0.2 10.0 0.0 0.22 9.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DoxX PF07681.12 gi|344211500|ref|YP_004795820.1| - 5.5e-10 39.7 9.3 5.5e-10 39.7 9.3 1.7 2 0 0 2 2 2 1 DoxX SURF4 PF02077.15 gi|344211500|ref|YP_004795820.1| - 0.00047 19.8 0.4 0.00096 18.8 0.1 1.5 2 0 0 2 2 2 1 SURF4 family HR_lesion PF05514.11 gi|344211500|ref|YP_004795820.1| - 0.0032 17.6 0.9 0.0066 16.6 0.2 1.7 1 1 1 2 2 2 1 HR-like lesion-inducing Rhomboid PF01694.22 gi|344211501|ref|YP_004795821.1| - 8.3e-07 29.1 16.2 8.3e-07 29.1 16.2 2.6 2 1 0 2 2 2 1 Rhomboid family EMP70 PF02990.16 gi|344211501|ref|YP_004795821.1| - 0.073 11.7 6.8 0.12 11.0 6.8 1.3 1 0 0 1 1 1 0 Endomembrane protein 70 DUF1751 PF08551.10 gi|344211501|ref|YP_004795821.1| - 0.13 12.8 1.9 0.32 11.6 0.4 2.5 2 0 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) MTS PF05175.14 gi|344211502|ref|YP_004795822.1| - 6.9e-13 48.5 0.0 1e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|344211502|ref|YP_004795822.1| - 9.8e-11 41.7 0.1 1e-09 38.4 0.1 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|344211502|ref|YP_004795822.1| - 1.9e-10 41.3 0.0 6.9e-10 39.5 0.0 2.0 3 0 0 3 3 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344211502|ref|YP_004795822.1| - 1.8e-09 37.6 0.0 4e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|344211502|ref|YP_004795822.1| - 5.4e-09 35.9 0.0 7.2e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|344211502|ref|YP_004795822.1| - 2.3e-08 34.5 0.0 9.9e-08 32.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|344211502|ref|YP_004795822.1| - 2.7e-07 30.4 0.0 3.8e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 gi|344211502|ref|YP_004795822.1| - 1.3e-06 28.4 0.0 1.7e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344211502|ref|YP_004795822.1| - 2.5e-05 23.7 0.0 3.6e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|344211502|ref|YP_004795822.1| - 0.00043 20.1 0.0 0.00054 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211502|ref|YP_004795822.1| - 0.00047 20.8 0.0 0.00095 19.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|344211502|ref|YP_004795822.1| - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_18 PF12847.7 gi|344211502|ref|YP_004795822.1| - 0.0036 17.3 0.0 0.0049 16.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|344211502|ref|YP_004795822.1| - 0.0063 15.8 0.0 0.008 15.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|344211502|ref|YP_004795822.1| - 0.0094 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|344211502|ref|YP_004795822.1| - 0.012 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein RrnaAD PF00398.20 gi|344211502|ref|YP_004795822.1| - 0.016 14.3 0.0 0.02 14.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|344211502|ref|YP_004795822.1| - 0.03 14.5 0.0 0.042 14.0 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|344211502|ref|YP_004795822.1| - 0.094 11.6 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|344211502|ref|YP_004795822.1| - 0.21 11.3 0.0 0.28 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FAE1_CUT1_RppA PF08392.12 gi|344211502|ref|YP_004795822.1| - 0.22 10.8 0.0 0.33 10.2 0.0 1.1 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein HATPase_c PF02518.26 gi|344211503|ref|YP_004795823.1| - 8.5e-19 68.1 0.0 2.1e-18 66.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|344211503|ref|YP_004795823.1| - 3.3e-13 49.8 0.1 9.8e-13 48.3 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|344211503|ref|YP_004795823.1| - 2.6e-06 27.6 0.0 7e-06 26.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|344211503|ref|YP_004795823.1| - 5.6e-06 26.3 0.1 1.3e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|344211503|ref|YP_004795823.1| - 2.2e-05 24.1 0.1 4.4e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|344211503|ref|YP_004795823.1| - 0.0008 19.3 0.0 0.0019 18.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|344211503|ref|YP_004795823.1| - 0.011 15.7 0.0 0.031 14.3 0.0 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|344211503|ref|YP_004795823.1| - 0.013 16.1 0.0 0.026 15.2 0.0 1.5 1 0 0 1 1 1 0 GAF domain HATPase_c_3 PF13589.6 gi|344211503|ref|YP_004795823.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|344211504|ref|YP_004795824.1| - 4e-15 56.3 0.1 1.1e-14 54.8 0.0 1.8 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|344211504|ref|YP_004795824.1| - 3.3e-14 53.0 0.0 8e-14 51.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.6 gi|344211504|ref|YP_004795824.1| - 1.2e-05 25.3 0.3 4.1e-05 23.5 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|344211504|ref|YP_004795824.1| - 5.8e-05 22.7 0.2 0.00013 21.6 0.2 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|344211504|ref|YP_004795824.1| - 0.00077 19.3 0.0 0.0018 18.1 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|344211504|ref|YP_004795824.1| - 0.0019 18.2 1.7 0.0061 16.6 0.1 2.7 1 1 2 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|344211504|ref|YP_004795824.1| - 0.07 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|344211505|ref|YP_004795825.1| - 6.5e-19 68.2 0.0 7.7e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|344211506|ref|YP_004795826.1| - 2.3e-24 85.8 0.6 2.7e-11 43.7 0.0 3.0 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|344211506|ref|YP_004795826.1| - 1e-22 80.7 0.0 3.4e-22 79.1 0.0 1.9 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|344211506|ref|YP_004795826.1| - 6.9e-14 52.0 0.0 2.9e-07 30.7 0.0 2.9 2 1 0 2 2 2 2 PAS domain PAS PF00989.25 gi|344211506|ref|YP_004795826.1| - 2.9e-13 49.8 0.0 5.1e-06 26.5 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|344211506|ref|YP_004795826.1| - 2.5e-10 40.8 1.6 8.1e-10 39.1 0.1 2.7 2 1 0 2 2 2 1 GAF domain HisKA PF00512.25 gi|344211506|ref|YP_004795826.1| - 3.4e-10 39.8 0.0 3.4e-10 39.8 0.0 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|344211506|ref|YP_004795826.1| - 1.9e-09 37.3 0.0 1.8e-08 34.2 0.0 2.7 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|344211506|ref|YP_004795826.1| - 1.9e-08 34.1 0.0 3.5e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|344211506|ref|YP_004795826.1| - 1.4e-05 25.0 0.2 3.8e-05 23.6 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.6 gi|344211506|ref|YP_004795826.1| - 0.00098 19.5 0.0 0.003 17.9 0.0 1.9 1 0 0 1 1 1 1 GAF domain sCache_3_3 PF17202.4 gi|344211506|ref|YP_004795826.1| - 0.069 13.6 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Single cache domain 3 HATPase_c_3 PF13589.6 gi|344211506|ref|YP_004795826.1| - 0.12 12.2 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TelA PF05816.11 gi|344211506|ref|YP_004795826.1| - 0.46 9.5 4.0 2.4 7.1 0.6 2.4 2 1 0 2 2 2 0 Toxic anion resistance protein (TelA) CorA PF01544.18 gi|344211506|ref|YP_004795826.1| - 0.62 9.3 6.4 1.5 8.1 2.8 2.4 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Diphthamide_syn PF01866.17 gi|344211507|ref|YP_004795827.1| - 2e-78 263.9 0.0 2.4e-78 263.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|344211507|ref|YP_004795827.1| - 0.017 15.8 0.0 1 10.1 0.0 2.4 2 0 0 2 2 2 0 GTP-binding GTPase N-terminal DAHP_snth_FXD PF18152.1 gi|344211507|ref|YP_004795827.1| - 0.19 11.6 0.0 0.55 10.1 0.0 1.8 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain MCPsignal PF00015.21 gi|344211508|ref|YP_004795828.1| - 1e-35 123.1 49.0 7.8e-34 116.9 27.6 3.6 1 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|344211508|ref|YP_004795828.1| - 2.4e-14 53.3 0.0 1.1e-13 51.1 0.0 2.2 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|344211508|ref|YP_004795828.1| - 4.6e-12 46.2 0.1 2.9e-11 43.6 0.1 2.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|344211508|ref|YP_004795828.1| - 2e-07 31.2 0.0 1e-06 28.9 0.0 2.3 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|344211508|ref|YP_004795828.1| - 1.9e-06 27.7 0.1 8.9e-06 25.6 0.1 2.2 1 1 0 1 1 1 1 PAS domain Laminin_II PF06009.12 gi|344211508|ref|YP_004795828.1| - 6.4e-06 26.2 33.2 0.0011 19.0 7.6 4.2 1 1 4 5 5 5 5 Laminin Domain II DUF948 PF06103.11 gi|344211508|ref|YP_004795828.1| - 2.8e-05 24.3 31.5 0.07 13.4 1.4 4.8 2 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|344211508|ref|YP_004795828.1| - 6.9e-05 23.1 27.0 0.01 16.1 0.6 4.8 1 1 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 PAS_7 PF12860.7 gi|344211508|ref|YP_004795828.1| - 0.0023 18.1 0.0 0.0023 18.1 0.0 4.1 2 2 3 5 5 5 1 PAS fold Alanine_zipper PF11839.8 gi|344211508|ref|YP_004795828.1| - 0.0025 18.1 3.7 0.0025 18.1 3.7 5.0 2 1 2 4 4 3 1 Alanine-zipper, major outer membrane lipoprotein DUF1664 PF07889.12 gi|344211508|ref|YP_004795828.1| - 0.0037 17.3 30.7 0.54 10.3 2.1 4.3 1 1 2 4 4 4 4 Protein of unknown function (DUF1664) ApoO PF09769.9 gi|344211508|ref|YP_004795828.1| - 0.0048 16.9 11.4 0.53 10.3 0.4 3.7 2 2 1 4 4 4 2 Apolipoprotein O Fib_alpha PF08702.10 gi|344211508|ref|YP_004795828.1| - 0.0048 17.1 20.6 0.31 11.2 2.1 3.6 1 1 3 4 4 4 2 Fibrinogen alpha/beta chain family CHASE3 PF05227.13 gi|344211508|ref|YP_004795828.1| - 0.0073 16.2 4.2 0.0073 16.2 4.2 4.2 1 1 1 3 3 3 1 CHASE3 domain Corona_S2 PF01601.16 gi|344211508|ref|YP_004795828.1| - 0.0091 14.5 0.9 0.0091 14.5 0.9 2.3 1 1 0 2 2 2 1 Coronavirus S2 glycoprotein Flagellar_rod PF05149.12 gi|344211508|ref|YP_004795828.1| - 0.01 15.3 24.2 0.046 13.2 7.3 3.1 1 1 0 3 3 3 0 Paraflagellar rod protein ApoLp-III PF07464.11 gi|344211508|ref|YP_004795828.1| - 0.027 14.6 36.4 0.017 15.2 13.8 3.7 1 1 2 3 3 3 0 Apolipophorin-III precursor (apoLp-III) MT0933_antitox PF14013.6 gi|344211508|ref|YP_004795828.1| - 0.035 14.4 1.9 0.035 14.4 1.9 4.6 4 2 1 5 5 4 0 MT0933-like antitoxin protein Syntaxin-6_N PF09177.11 gi|344211508|ref|YP_004795828.1| - 0.047 14.2 28.2 0.32 11.6 1.5 4.4 2 2 1 3 3 3 0 Syntaxin 6, N-terminal Collagen_mid PF15984.5 gi|344211508|ref|YP_004795828.1| - 0.06 13.1 1.1 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Bacterial collagen, middle region SbsC_C PF18058.1 gi|344211508|ref|YP_004795828.1| - 0.11 12.7 0.2 0.11 12.7 0.2 2.8 2 2 1 3 3 3 0 SbsC C-terminal domain ISG65-75 PF11727.8 gi|344211508|ref|YP_004795828.1| - 0.17 11.1 30.1 0.39 9.9 7.8 3.2 1 1 2 3 3 3 0 Invariant surface glycoprotein MLTR_LBD PF17765.1 gi|344211508|ref|YP_004795828.1| - 0.18 11.9 0.0 0.18 11.9 0.0 3.2 3 2 1 4 4 3 0 MmyB-like transcription regulator ligand binding domain COG2 PF06148.11 gi|344211508|ref|YP_004795828.1| - 0.18 11.9 29.3 0.87 9.7 1.8 4.8 1 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2451 PF10474.9 gi|344211508|ref|YP_004795828.1| - 0.27 11.0 2.3 3.1 7.5 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function C-terminus (DUF2451) DUF577 PF04510.12 gi|344211508|ref|YP_004795828.1| - 0.28 11.1 2.8 1 9.3 0.2 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF577) T3SSipB PF16535.5 gi|344211508|ref|YP_004795828.1| - 0.32 11.5 35.0 2 8.9 9.7 3.3 1 1 1 3 3 3 0 Type III cell invasion protein SipB LXG PF04740.12 gi|344211508|ref|YP_004795828.1| - 0.41 10.3 31.2 1.2 8.8 4.6 3.3 1 1 1 3 3 3 0 LXG domain of WXG superfamily F_actin_bind PF08919.10 gi|344211508|ref|YP_004795828.1| - 0.42 10.7 10.6 0.64 10.1 0.1 4.1 1 1 3 4 4 3 0 F-actin binding GLE1 PF07817.13 gi|344211508|ref|YP_004795828.1| - 0.47 9.6 3.3 0.77 8.9 0.2 2.3 2 1 0 2 2 2 0 GLE1-like protein dCache_1 PF02743.18 gi|344211508|ref|YP_004795828.1| - 0.53 10.0 22.9 6.1 6.5 2.3 4.3 1 1 2 4 4 4 0 Cache domain DUF883 PF05957.13 gi|344211508|ref|YP_004795828.1| - 0.55 10.9 32.8 0.24 12.0 4.3 4.7 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF883) DUF812 PF05667.11 gi|344211508|ref|YP_004795828.1| - 0.58 9.0 34.5 0.54 9.1 21.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Spectrin PF00435.21 gi|344211508|ref|YP_004795828.1| - 0.73 10.4 26.8 0.27 11.7 7.0 4.1 2 2 3 5 5 5 0 Spectrin repeat Lipoprotein_7 PF01540.16 gi|344211508|ref|YP_004795828.1| - 0.76 9.0 27.7 0.92 8.7 17.3 2.1 1 1 1 2 2 2 0 Adhesin lipoprotein TMPIT PF07851.13 gi|344211508|ref|YP_004795828.1| - 0.79 8.9 22.0 1.3 8.2 2.7 3.4 1 1 2 3 3 3 0 TMPIT-like protein FH2 PF02181.23 gi|344211508|ref|YP_004795828.1| - 0.92 8.6 17.5 0.45 9.6 3.3 2.6 2 1 0 2 2 2 0 Formin Homology 2 Domain EzrA PF06160.12 gi|344211508|ref|YP_004795828.1| - 0.98 7.5 28.6 3.2 5.8 16.2 2.8 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA FlgN PF05130.12 gi|344211508|ref|YP_004795828.1| - 1 9.9 28.1 2.8 8.4 5.9 3.2 1 1 1 3 3 3 0 FlgN protein ATG16 PF08614.11 gi|344211508|ref|YP_004795828.1| - 1.3 9.2 34.0 0.75 10.0 12.0 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) HAUS6_N PF14661.6 gi|344211508|ref|YP_004795828.1| - 1.4 8.5 12.8 4.6e+02 0.2 12.8 2.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Cob_adeno_trans PF01923.18 gi|344211508|ref|YP_004795828.1| - 1.4 9.0 20.9 2.9 8.0 9.0 3.3 1 1 0 2 2 2 0 Cobalamin adenosyltransferase Peptidase_C65 PF10275.9 gi|344211508|ref|YP_004795828.1| - 1.6 8.1 14.0 1.4 8.3 2.2 3.1 1 1 2 4 4 4 0 Peptidase C65 Otubain IKBKB_SDD PF18397.1 gi|344211508|ref|YP_004795828.1| - 2 7.7 6.8 0.36 10.1 1.5 2.3 1 1 1 2 2 2 0 IQBAL scaffold dimerization domain Sec34 PF04136.15 gi|344211508|ref|YP_004795828.1| - 2.9 7.8 21.3 6.1 6.7 1.0 4.5 1 1 3 5 5 5 0 Sec34-like family NPV_P10 PF05531.12 gi|344211508|ref|YP_004795828.1| - 3.5 8.1 27.5 2.4 8.7 5.0 5.2 2 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein CorA PF01544.18 gi|344211508|ref|YP_004795828.1| - 3.7 6.8 22.4 1.4 8.2 8.4 2.7 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Med9 PF07544.13 gi|344211508|ref|YP_004795828.1| - 4 7.6 16.3 4.1 7.6 0.7 4.7 3 1 2 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 Golgin_A5 PF09787.9 gi|344211508|ref|YP_004795828.1| - 4.3 6.7 34.6 1.9 7.9 15.8 2.3 2 0 0 2 2 2 0 Golgin subfamily A member 5 MAD PF05557.13 gi|344211508|ref|YP_004795828.1| - 4.5 5.5 31.0 4.8 5.4 10.9 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein BAR_3 PF16746.5 gi|344211508|ref|YP_004795828.1| - 4.9 6.8 14.0 0.31 10.7 3.9 2.6 2 1 0 2 2 2 0 BAR domain of APPL family Abi_C PF14355.6 gi|344211508|ref|YP_004795828.1| - 5 7.3 5.5 13 5.9 0.1 3.8 4 1 0 4 4 3 0 Abortive infection C-terminus Tweety PF04906.13 gi|344211508|ref|YP_004795828.1| - 5.5 5.5 17.3 0.11 11.2 3.8 3.2 1 1 2 4 4 4 0 Tweety CENP-K PF11802.8 gi|344211508|ref|YP_004795828.1| - 5.6 6.5 12.6 0.82 9.2 5.1 2.3 1 1 1 2 2 2 0 Centromere-associated protein K YkyA PF10368.9 gi|344211508|ref|YP_004795828.1| - 5.6 6.6 40.4 2.5 7.7 5.5 3.8 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein DUF489 PF04356.12 gi|344211508|ref|YP_004795828.1| - 5.8 6.9 8.5 2.1 8.3 4.5 2.3 2 2 0 2 2 2 0 Protein of unknown function (DUF489) TMP_2 PF06791.13 gi|344211508|ref|YP_004795828.1| - 6.1 6.5 27.7 6.6 6.4 7.8 3.7 1 1 3 4 4 4 0 Prophage tail length tape measure protein Mod_r PF07200.13 gi|344211508|ref|YP_004795828.1| - 8.5 6.5 29.5 6 7.0 9.3 3.8 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Com_YlbF PF06133.11 gi|344211509|ref|YP_004795829.1| - 4e-22 78.8 10.9 4.5e-22 78.6 10.9 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA DUF3080 PF11279.8 gi|344211509|ref|YP_004795829.1| - 0.0018 17.5 0.9 0.0022 17.3 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3080) Usp PF00582.26 gi|344211510|ref|YP_004795830.1| - 2e-31 109.4 1.8 2.3e-31 109.2 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|344211510|ref|YP_004795830.1| - 0.023 14.7 0.0 0.041 13.9 0.0 1.3 1 1 0 1 1 1 0 DNA photolyase Lactamase_B_2 PF12706.7 gi|344211511|ref|YP_004795831.1| - 1.2e-17 64.1 1.5 1.5e-17 63.8 1.5 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|344211511|ref|YP_004795831.1| - 1.5e-11 44.4 0.2 2.1e-11 44.0 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3038 PF11237.8 gi|344211511|ref|YP_004795831.1| - 0.036 14.1 0.0 0.053 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) NPV_P10 PF05531.12 gi|344211512|ref|YP_004795832.1| - 1.7e-06 28.4 4.5 0.028 14.9 0.7 3.3 2 1 1 3 3 3 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|344211512|ref|YP_004795832.1| - 0.00011 21.2 2.7 0.0002 20.4 2.7 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein Laminin_II PF06009.12 gi|344211512|ref|YP_004795832.1| - 0.0002 21.4 0.3 0.00042 20.3 0.3 1.6 1 0 0 1 1 1 1 Laminin Domain II DUF4200 PF13863.6 gi|344211512|ref|YP_004795832.1| - 0.00049 20.5 0.7 0.035 14.5 0.8 2.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4200) ABC_tran_CTD PF16326.5 gi|344211512|ref|YP_004795832.1| - 0.00051 20.2 8.0 0.16 12.2 2.2 2.7 2 0 0 2 2 2 2 ABC transporter C-terminal domain CENP-F_leu_zip PF10473.9 gi|344211512|ref|YP_004795832.1| - 0.0011 19.0 6.0 0.0031 17.5 5.3 2.0 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FPP PF05911.11 gi|344211512|ref|YP_004795832.1| - 0.0027 16.0 2.0 0.0035 15.6 2.0 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil DUF3450 PF11932.8 gi|344211512|ref|YP_004795832.1| - 0.0041 16.4 1.3 0.0041 16.4 1.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|344211512|ref|YP_004795832.1| - 0.0055 17.1 1.1 0.03 14.7 0.3 2.5 1 1 1 2 2 2 1 Cell division protein ZapB Baculo_PEP_C PF04513.12 gi|344211512|ref|YP_004795832.1| - 0.0058 16.7 0.2 0.29 11.2 0.1 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.21 gi|344211512|ref|YP_004795832.1| - 0.0059 16.2 4.5 0.011 15.3 3.4 1.8 1 1 1 2 2 2 1 Intermediate filament protein DUF1664 PF07889.12 gi|344211512|ref|YP_004795832.1| - 0.0067 16.5 2.0 0.049 13.7 0.2 2.6 1 1 2 3 3 2 1 Protein of unknown function (DUF1664) LXG PF04740.12 gi|344211512|ref|YP_004795832.1| - 0.009 15.7 1.8 0.015 15.0 1.7 1.4 1 1 0 1 1 1 1 LXG domain of WXG superfamily Fib_alpha PF08702.10 gi|344211512|ref|YP_004795832.1| - 0.011 15.9 0.5 0.034 14.3 0.2 1.9 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family PspA_IM30 PF04012.12 gi|344211512|ref|YP_004795832.1| - 0.011 15.3 1.7 0.16 11.5 0.1 2.3 1 1 1 2 2 2 0 PspA/IM30 family End3 PF12761.7 gi|344211512|ref|YP_004795832.1| - 0.012 15.8 1.3 0.099 12.8 0.4 2.2 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 TolA_bind_tri PF16331.5 gi|344211512|ref|YP_004795832.1| - 0.013 15.6 4.1 0.045 13.8 0.1 2.9 2 1 1 3 3 3 0 TolA binding protein trimerisation EzrA PF06160.12 gi|344211512|ref|YP_004795832.1| - 0.014 13.7 1.8 0.026 12.7 1.8 1.4 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF812 PF05667.11 gi|344211512|ref|YP_004795832.1| - 0.016 14.1 3.5 0.021 13.7 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Laminin_I PF06008.14 gi|344211512|ref|YP_004795832.1| - 0.018 14.8 1.2 0.03 14.0 1.2 1.4 1 0 0 1 1 1 0 Laminin Domain I DUF948 PF06103.11 gi|344211512|ref|YP_004795832.1| - 0.019 15.2 3.3 0.028 14.7 0.2 2.7 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF4988 PF16378.5 gi|344211512|ref|YP_004795832.1| - 0.02 14.6 0.8 0.14 11.8 0.3 2.5 2 1 0 2 2 2 0 Domain of unknown function Nsp1_C PF05064.13 gi|344211512|ref|YP_004795832.1| - 0.02 14.7 3.5 0.039 13.7 3.5 1.5 1 0 0 1 1 1 0 Nsp1-like C-terminal region HBM PF16591.5 gi|344211512|ref|YP_004795832.1| - 0.021 14.3 5.0 0.75 9.2 0.4 3.0 1 1 2 3 3 3 0 Helical bimodular sensor domain Spectrin PF00435.21 gi|344211512|ref|YP_004795832.1| - 0.022 15.3 1.1 0.022 15.3 1.1 2.4 1 1 1 2 2 2 0 Spectrin repeat AAA_13 PF13166.6 gi|344211512|ref|YP_004795832.1| - 0.024 13.3 0.8 0.033 12.9 0.8 1.2 1 0 0 1 1 1 0 AAA domain BLOC1_2 PF10046.9 gi|344211512|ref|YP_004795832.1| - 0.026 14.8 3.5 7.2 7.0 0.1 3.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|344211512|ref|YP_004795832.1| - 0.026 14.9 5.1 1.4 9.4 0.2 3.7 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) HrpB7 PF09486.10 gi|344211512|ref|YP_004795832.1| - 0.03 14.7 3.2 0.03 14.7 3.2 2.9 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) Fez1 PF06818.15 gi|344211512|ref|YP_004795832.1| - 0.03 14.8 3.4 0.11 12.9 1.5 2.0 1 1 1 2 2 2 0 Fez1 DUF5082 PF16888.5 gi|344211512|ref|YP_004795832.1| - 0.034 14.4 5.1 2.8 8.3 0.4 3.1 1 1 2 3 3 2 0 Domain of unknown function (DUF5082) Sec34 PF04136.15 gi|344211512|ref|YP_004795832.1| - 0.042 13.7 0.7 0.12 12.2 0.4 1.8 1 1 1 2 2 2 0 Sec34-like family MAD PF05557.13 gi|344211512|ref|YP_004795832.1| - 0.043 12.2 0.9 0.064 11.6 0.9 1.2 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF16 PF01519.16 gi|344211512|ref|YP_004795832.1| - 0.048 14.2 2.6 0.17 12.4 1.3 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 HAUS-augmin3 PF14932.6 gi|344211512|ref|YP_004795832.1| - 0.051 13.1 0.1 0.091 12.3 0.1 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Img2 PF05046.14 gi|344211512|ref|YP_004795832.1| - 0.052 13.8 0.1 5.5 7.4 0.0 2.6 2 0 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) Prefoldin PF02996.17 gi|344211512|ref|YP_004795832.1| - 0.054 13.4 5.0 28 4.6 0.1 4.0 1 1 3 4 4 4 0 Prefoldin subunit Lambda_tail_I PF06805.12 gi|344211512|ref|YP_004795832.1| - 0.058 13.7 0.1 5.6 7.4 0.0 2.6 1 1 1 2 2 2 0 Bacteriophage lambda tail assembly protein I TBCC_N PF16752.5 gi|344211512|ref|YP_004795832.1| - 0.067 13.6 5.0 1 9.8 0.3 2.6 1 1 1 2 2 2 0 Tubulin-specific chaperone C N-terminal domain ATG16 PF08614.11 gi|344211512|ref|YP_004795832.1| - 0.073 13.3 4.9 0.15 12.2 4.3 1.9 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) Syntaxin-6_N PF09177.11 gi|344211512|ref|YP_004795832.1| - 0.077 13.6 5.1 0.57 10.8 4.0 2.7 1 1 1 2 2 1 0 Syntaxin 6, N-terminal Atg14 PF10186.9 gi|344211512|ref|YP_004795832.1| - 0.08 12.0 0.3 0.23 10.5 0.1 1.6 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIVA PF05103.13 gi|344211512|ref|YP_004795832.1| - 0.086 12.9 3.0 2.3 8.3 0.6 2.6 2 0 0 2 2 2 0 DivIVA protein Syntaxin PF00804.25 gi|344211512|ref|YP_004795832.1| - 0.095 12.4 0.6 0.18 11.5 0.1 1.6 2 0 0 2 2 1 0 Syntaxin Not3 PF04065.15 gi|344211512|ref|YP_004795832.1| - 0.097 12.1 3.4 0.47 9.8 0.9 2.4 1 1 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component MscS_porin PF12795.7 gi|344211512|ref|YP_004795832.1| - 0.1 12.1 2.3 0.32 10.5 2.3 1.7 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain LPP PF04728.13 gi|344211512|ref|YP_004795832.1| - 0.1 13.0 0.6 0.1 13.0 0.6 4.0 3 2 1 4 4 4 0 Lipoprotein leucine-zipper DivIC PF04977.15 gi|344211512|ref|YP_004795832.1| - 0.11 12.3 8.9 5.2 6.9 0.0 4.1 3 1 1 4 4 3 0 Septum formation initiator COG6 PF06419.11 gi|344211512|ref|YP_004795832.1| - 0.14 10.3 0.4 0.33 9.1 0.0 1.7 2 1 0 2 2 1 0 Conserved oligomeric complex COG6 STAT_alpha PF01017.20 gi|344211512|ref|YP_004795832.1| - 0.16 11.9 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 STAT protein, all-alpha domain COG2 PF06148.11 gi|344211512|ref|YP_004795832.1| - 0.16 12.1 2.3 3.2 7.8 0.6 2.5 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 FUSC PF04632.12 gi|344211512|ref|YP_004795832.1| - 0.16 10.5 0.8 0.32 9.5 0.1 1.6 1 1 1 2 2 2 0 Fusaric acid resistance protein family SesA PF17107.5 gi|344211512|ref|YP_004795832.1| - 0.16 12.2 0.4 0.37 11.0 0.2 1.8 2 0 0 2 2 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Rab5-bind PF09311.11 gi|344211512|ref|YP_004795832.1| - 0.16 11.3 4.6 0.36 10.2 0.2 2.1 1 1 1 2 2 2 0 Rabaptin-like protein Golgin_A5 PF09787.9 gi|344211512|ref|YP_004795832.1| - 0.16 11.4 6.7 0.15 11.5 4.9 1.6 1 1 1 2 2 2 0 Golgin subfamily A member 5 Tropomyosin_1 PF12718.7 gi|344211512|ref|YP_004795832.1| - 0.16 12.1 7.4 0.47 10.6 7.4 1.8 1 1 0 1 1 1 0 Tropomyosin like Sugarporin_N PF11471.8 gi|344211512|ref|YP_004795832.1| - 0.17 11.9 0.7 3 7.9 0.1 2.5 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension HMMR_N PF15905.5 gi|344211512|ref|YP_004795832.1| - 0.17 11.3 3.8 0.23 10.9 2.0 1.7 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF4349 PF14257.6 gi|344211512|ref|YP_004795832.1| - 0.18 11.2 10.8 2.2 7.7 0.2 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) BST2 PF16716.5 gi|344211512|ref|YP_004795832.1| - 0.29 11.7 1.2 7.3 7.2 0.8 2.8 1 1 0 2 2 2 0 Bone marrow stromal antigen 2 FAM184 PF15665.5 gi|344211512|ref|YP_004795832.1| - 0.33 10.7 2.8 0.62 9.8 2.8 1.5 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B TPR_MLP1_2 PF07926.12 gi|344211512|ref|YP_004795832.1| - 0.34 11.0 6.1 1.1 9.3 3.6 2.6 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Cytochrom_B562 PF07361.11 gi|344211512|ref|YP_004795832.1| - 0.52 11.0 3.4 1.4 9.7 2.1 2.1 1 1 1 2 2 2 0 Cytochrome b562 DUF2353 PF09789.9 gi|344211512|ref|YP_004795832.1| - 0.59 9.4 3.9 1.1 8.6 2.9 1.8 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) Cob_adeno_trans PF01923.18 gi|344211512|ref|YP_004795832.1| - 0.61 10.2 3.7 8 6.6 2.0 2.7 1 1 1 2 2 2 0 Cobalamin adenosyltransferase DUF1515 PF07439.11 gi|344211512|ref|YP_004795832.1| - 0.66 10.0 3.8 2 8.5 0.6 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF1515) IFT57 PF10498.9 gi|344211512|ref|YP_004795832.1| - 0.8 8.6 5.7 3.2 6.6 5.7 2.0 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 XhlA PF10779.9 gi|344211512|ref|YP_004795832.1| - 0.89 9.8 6.5 11 6.3 2.1 3.3 2 1 1 3 3 3 0 Haemolysin XhlA DUF241 PF03087.14 gi|344211512|ref|YP_004795832.1| - 1.1 9.0 3.0 4.8 6.9 0.1 2.4 1 1 1 2 2 2 0 Arabidopsis protein of unknown function APG6_N PF17675.1 gi|344211512|ref|YP_004795832.1| - 1.2 9.7 9.8 8.4 6.9 8.8 2.4 1 1 1 2 2 2 0 Apg6 coiled-coil region Phage_GP20 PF06810.11 gi|344211512|ref|YP_004795832.1| - 1.3 8.8 10.2 1.1 9.1 3.7 3.0 1 1 0 2 2 2 0 Phage minor structural protein GP20 DHR10 PF18595.1 gi|344211512|ref|YP_004795832.1| - 1.5 8.9 6.5 3.3 7.8 2.7 2.4 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Prefoldin_2 PF01920.20 gi|344211512|ref|YP_004795832.1| - 1.5 8.8 6.6 14 5.7 0.0 3.5 1 1 2 3 3 3 0 Prefoldin subunit DUF4407 PF14362.6 gi|344211512|ref|YP_004795832.1| - 1.7 7.9 5.1 3.8 6.8 5.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) THOC7 PF05615.13 gi|344211512|ref|YP_004795832.1| - 1.7 8.9 4.5 35 4.7 4.5 2.8 1 1 0 1 1 1 0 Tho complex subunit 7 MerR-DNA-bind PF09278.11 gi|344211512|ref|YP_004795832.1| - 3.3 8.3 8.0 86 3.8 4.2 3.4 2 1 1 3 3 3 0 MerR, DNA binding UPF0242 PF06785.11 gi|344211512|ref|YP_004795832.1| - 4.3 7.4 6.0 13 5.8 6.0 1.8 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4795 PF16043.5 gi|344211512|ref|YP_004795832.1| - 4.8 6.7 7.5 10 5.7 7.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) SlyX PF04102.12 gi|344211512|ref|YP_004795832.1| - 5 7.8 8.1 3.6 8.3 0.6 3.6 1 1 2 4 4 3 0 SlyX TMF_TATA_bd PF12325.8 gi|344211512|ref|YP_004795832.1| - 6 7.1 8.0 3.4 7.9 4.9 2.2 2 1 0 2 2 1 0 TATA element modulatory factor 1 TATA binding HSBP1 PF06825.12 gi|344211512|ref|YP_004795832.1| - 6.8 6.6 8.3 29 4.6 0.1 3.5 2 1 1 3 3 3 0 Heat shock factor binding protein 1 HisG PF01634.18 gi|344211513|ref|YP_004795833.1| - 0.037 14.0 0.0 0.074 13.0 0.0 1.6 1 1 0 1 1 1 0 ATP phosphoribosyltransferase ABC2_membrane_2 PF12679.7 gi|344211514|ref|YP_004795834.1| - 3.2e-21 75.9 24.9 3.4e-19 69.2 24.9 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|344211514|ref|YP_004795834.1| - 0.0013 18.2 9.1 0.0013 18.2 9.1 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|344211514|ref|YP_004795834.1| - 4.8 6.2 7.4 2 7.5 5.2 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|344211515|ref|YP_004795835.1| - 3.7e-28 98.8 0.0 5.9e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211515|ref|YP_004795835.1| - 2.7e-11 43.8 0.7 1.7e-06 28.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|344211515|ref|YP_004795835.1| - 1.9e-05 25.3 0.0 3.6e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) ATP-synt_ab PF00006.25 gi|344211515|ref|YP_004795835.1| - 0.046 13.4 0.1 0.3 10.7 0.0 1.8 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 gi|344211515|ref|YP_004795835.1| - 0.05 12.2 0.1 0.07 11.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|344211515|ref|YP_004795835.1| - 0.094 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|344211515|ref|YP_004795835.1| - 0.12 12.7 0.1 0.34 11.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|344211515|ref|YP_004795835.1| - 0.21 12.1 0.1 0.3 11.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|344211515|ref|YP_004795835.1| - 0.22 9.0 0.4 0.29 8.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NosD PF05048.13 gi|344211516|ref|YP_004795836.1| - 2.7e-56 190.5 21.7 1.1e-52 178.7 18.4 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|344211516|ref|YP_004795836.1| - 1.3e-26 93.4 22.8 3.6e-19 69.2 5.7 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|344211516|ref|YP_004795836.1| - 1.3e-06 28.0 13.2 0.0021 17.4 6.4 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pertactin PF03212.14 gi|344211516|ref|YP_004795836.1| - 0.22 11.5 2.6 0.53 10.2 0.2 2.5 2 1 0 2 2 2 0 Pertactin nos_propeller_2 PF18793.1 gi|344211518|ref|YP_004795838.1| - 6.4e-30 103.3 0.2 1.8e-29 101.9 0.2 1.8 1 0 0 1 1 1 1 Nitrous oxide reductase propeller repeat 2 nos_propeller PF18764.1 gi|344211518|ref|YP_004795838.1| - 1.1e-29 102.2 0.4 7.5e-29 99.5 0.2 2.4 3 0 0 3 3 3 1 Nitrous oxide reductase propeller repeat TAT_signal PF10518.9 gi|344211518|ref|YP_004795838.1| - 3.2e-05 23.6 4.9 5.2e-05 22.9 4.9 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence COX2 PF00116.20 gi|344211518|ref|YP_004795838.1| - 5e-05 23.2 0.0 0.0001 22.1 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|344211518|ref|YP_004795838.1| - 0.0002 21.5 0.0 0.00043 20.4 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain Glyco_transf_36 PF06165.11 gi|344211518|ref|YP_004795838.1| - 0.056 12.8 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 36 Copper-bind PF00127.20 gi|344211519|ref|YP_004795839.1| - 6.1e-20 71.5 0.3 1.1e-19 70.7 0.3 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|344211519|ref|YP_004795839.1| - 9.7e-07 28.9 1.1 1.5e-05 25.1 1.1 2.0 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|344211519|ref|YP_004795839.1| - 0.12 12.3 5.7 0.22 11.4 5.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence IclR PF01614.18 gi|344211521|ref|YP_004795841.1| - 6.6e-35 119.8 0.4 1.1e-34 119.1 0.1 1.5 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344211521|ref|YP_004795841.1| - 3.6e-09 36.3 0.0 1.3e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344211521|ref|YP_004795841.1| - 1.3e-05 24.6 0.1 0.00017 21.1 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344211521|ref|YP_004795841.1| - 2.2e-05 24.2 0.0 4.4e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|344211521|ref|YP_004795841.1| - 0.0028 17.6 0.5 0.012 15.5 0.0 2.3 4 0 0 4 4 4 1 HTH domain DUF4423 PF14394.6 gi|344211521|ref|YP_004795841.1| - 0.0033 17.2 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.22 gi|344211521|ref|YP_004795841.1| - 0.005 16.7 0.1 0.041 13.8 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_45 PF14947.6 gi|344211521|ref|YP_004795841.1| - 0.0081 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|344211521|ref|YP_004795841.1| - 0.042 13.9 0.1 0.18 11.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.19 gi|344211521|ref|YP_004795841.1| - 0.063 13.2 0.0 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF1803 PF08820.10 gi|344211521|ref|YP_004795841.1| - 0.09 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) PadR PF03551.14 gi|344211521|ref|YP_004795841.1| - 0.092 12.7 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Mga PF08280.11 gi|344211521|ref|YP_004795841.1| - 0.1 12.7 0.2 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sulfolobus_pRN PF05584.11 gi|344211521|ref|YP_004795841.1| - 0.13 12.4 0.4 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein ELFV_dehydrog PF00208.21 gi|344211522|ref|YP_004795842.1| - 4.6e-71 239.4 0.4 7.5e-71 238.7 0.4 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|344211522|ref|YP_004795842.1| - 3.5e-54 182.2 0.0 6e-54 181.4 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|344211522|ref|YP_004795842.1| - 0.0011 18.4 0.1 0.0022 17.4 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|344211522|ref|YP_004795842.1| - 0.042 11.3 0.0 0.064 10.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase ThiF PF00899.21 gi|344211522|ref|YP_004795842.1| - 0.22 10.8 0.3 0.45 9.8 0.3 1.4 1 0 0 1 1 1 0 ThiF family AlaDh_PNT_C PF01262.21 gi|344211522|ref|YP_004795842.1| - 0.52 9.6 4.2 0.14 11.4 0.7 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Arginase PF00491.21 gi|344211523|ref|YP_004795843.1| - 7e-73 245.6 3.3 8.1e-73 245.3 3.3 1.0 1 0 0 1 1 1 1 Arginase family Aminotran_3 PF00202.21 gi|344211524|ref|YP_004795844.1| - 7.6e-82 275.1 0.0 3e-81 273.2 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III SBP_bac_3 PF00497.20 gi|344211525|ref|YP_004795845.1| - 1.9e-56 191.0 0.0 2.2e-56 190.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|344211525|ref|YP_004795845.1| - 4.8e-07 30.0 0.0 2.4e-06 27.7 0.0 2.2 2 1 0 2 2 2 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|344211525|ref|YP_004795845.1| - 0.0012 18.8 0.0 0.016 15.2 0.0 2.0 2 0 0 2 2 2 1 NMT1/THI5 like BPD_transp_1 PF00528.22 gi|344211526|ref|YP_004795846.1| - 6.7e-21 74.9 7.0 6.7e-21 74.9 7.0 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.8 gi|344211526|ref|YP_004795846.1| - 0.72 9.3 4.9 0.44 10.0 1.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) MNHE PF01899.16 gi|344211526|ref|YP_004795846.1| - 2.3 8.0 7.2 0.86 9.4 4.5 1.8 2 1 0 2 2 2 0 Na+/H+ ion antiporter subunit ABC_tran PF00005.27 gi|344211527|ref|YP_004795847.1| - 2.7e-34 118.6 0.0 3.7e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211527|ref|YP_004795847.1| - 4.1e-15 56.4 0.1 5.8e-07 29.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211527|ref|YP_004795847.1| - 7.1e-09 35.4 0.0 3e-08 33.4 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344211527|ref|YP_004795847.1| - 7.2e-06 25.6 0.0 1.6e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|344211527|ref|YP_004795847.1| - 8.7e-05 21.5 0.7 0.039 12.8 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|344211527|ref|YP_004795847.1| - 0.0002 21.8 0.3 0.00035 21.0 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344211527|ref|YP_004795847.1| - 0.00038 20.4 0.0 0.00063 19.7 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|344211527|ref|YP_004795847.1| - 0.00055 20.2 0.1 0.001 19.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344211527|ref|YP_004795847.1| - 0.00062 19.5 0.1 0.00092 19.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|344211527|ref|YP_004795847.1| - 0.0014 19.2 0.0 0.0024 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|344211527|ref|YP_004795847.1| - 0.003 18.1 0.0 0.0069 16.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|344211527|ref|YP_004795847.1| - 0.0048 16.7 0.0 0.021 14.6 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|344211527|ref|YP_004795847.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344211527|ref|YP_004795847.1| - 0.023 14.3 0.5 0.092 12.3 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|344211527|ref|YP_004795847.1| - 0.024 15.1 0.0 0.15 12.5 0.0 2.4 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|344211527|ref|YP_004795847.1| - 0.043 13.4 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain TK PF00265.18 gi|344211527|ref|YP_004795847.1| - 0.047 13.5 0.0 5.7 6.8 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase ATPase_2 PF01637.18 gi|344211527|ref|YP_004795847.1| - 0.051 13.5 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|344211527|ref|YP_004795847.1| - 0.052 13.5 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|344211527|ref|YP_004795847.1| - 0.13 12.2 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.12 gi|344211527|ref|YP_004795847.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|344211527|ref|YP_004795847.1| - 0.17 12.2 1.2 1.6 9.0 0.3 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.15 gi|344211527|ref|YP_004795847.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|344211527|ref|YP_004795847.1| - 0.21 11.9 0.4 0.99 9.6 0.1 2.2 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|344211527|ref|YP_004795847.1| - 0.21 11.3 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|344211527|ref|YP_004795847.1| - 0.23 10.2 0.1 1.1 8.0 0.0 1.8 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|344211528|ref|YP_004795848.1| - 8.9e-17 61.4 8.0 8.9e-17 61.4 8.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_10 PF04967.12 gi|344211529|ref|YP_004795849.1| - 1e-19 70.0 0.1 1.7e-19 69.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_psq PF05225.16 gi|344211529|ref|YP_004795849.1| - 0.00076 19.2 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_24 PF13412.6 gi|344211529|ref|YP_004795849.1| - 0.0014 18.1 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|344211529|ref|YP_004795849.1| - 0.027 14.5 0.0 0.1 12.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344211529|ref|YP_004795849.1| - 0.029 14.2 0.1 1.3 8.9 0.0 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|344211529|ref|YP_004795849.1| - 0.066 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|344211529|ref|YP_004795849.1| - 0.066 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|344211529|ref|YP_004795849.1| - 0.075 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|344211529|ref|YP_004795849.1| - 0.076 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|344211529|ref|YP_004795849.1| - 0.11 12.2 0.1 1.5 8.6 0.1 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 IF2_N PF04760.15 gi|344211529|ref|YP_004795849.1| - 0.19 11.6 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Phage_integrase PF00589.22 gi|344211530|ref|YP_004795850.1| - 2.3e-17 63.3 0.0 3.9e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|344211530|ref|YP_004795850.1| - 5e-09 36.3 0.0 1.1e-08 35.3 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|344211530|ref|YP_004795850.1| - 2.6e-06 27.8 0.0 6.9e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|344211530|ref|YP_004795850.1| - 0.03 14.7 0.0 0.067 13.5 0.0 1.6 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_integr_3 PF16795.5 gi|344211530|ref|YP_004795850.1| - 0.07 13.0 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 Archaeal phage integrase RHH_1 PF01402.21 gi|344211531|ref|YP_004795851.1| - 0.061 13.3 0.6 0.44 10.6 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Glycophorin_A PF01102.18 gi|344211532|ref|YP_004795852.1| - 0.095 12.9 1.6 0.099 12.9 1.6 1.0 1 0 0 1 1 1 0 Glycophorin A NapE PF06796.11 gi|344211532|ref|YP_004795852.1| - 0.19 11.3 2.5 0.22 11.1 2.5 1.1 1 0 0 1 1 1 0 Periplasmic nitrate reductase protein NapE CorA PF01544.18 gi|344211534|ref|YP_004795854.1| - 0.13 11.6 0.6 0.16 11.3 0.6 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF3018 PF11455.8 gi|344211534|ref|YP_004795854.1| - 0.15 12.0 0.3 0.15 12.0 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3018) DUF4407 PF14362.6 gi|344211534|ref|YP_004795854.1| - 0.31 10.3 4.5 0.33 10.2 4.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HAMP PF00672.25 gi|344211535|ref|YP_004795855.1| - 2.1e-09 37.6 6.7 2.9e-06 27.6 0.1 3.5 3 0 0 3 3 3 2 HAMP domain DUF948 PF06103.11 gi|344211535|ref|YP_004795855.1| - 0.00097 19.3 9.8 0.12 12.6 2.5 4.1 2 1 1 3 3 3 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|344211535|ref|YP_004795855.1| - 0.034 14.2 10.4 0.44 10.6 1.2 3.6 2 1 0 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|344211535|ref|YP_004795855.1| - 0.047 13.7 0.3 0.047 13.7 0.3 3.9 2 1 3 5 5 5 0 Laminin Domain II CENP-K PF11802.8 gi|344211535|ref|YP_004795855.1| - 0.16 11.5 4.5 0.041 13.5 0.6 1.8 1 1 1 2 2 2 0 Centromere-associated protein K Dynamin_M PF01031.20 gi|344211535|ref|YP_004795855.1| - 0.16 11.1 3.4 0.18 11.0 2.3 1.6 1 1 0 1 1 1 0 Dynamin central region Mce4_CUP1 PF11887.8 gi|344211535|ref|YP_004795855.1| - 0.19 11.1 5.4 0.97 8.8 4.5 2.3 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative CorA PF01544.18 gi|344211535|ref|YP_004795855.1| - 0.21 10.9 12.8 0.27 10.5 3.1 2.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein BORCS8 PF10167.9 gi|344211535|ref|YP_004795855.1| - 0.61 10.0 3.2 1.9 8.4 0.1 3.1 4 0 0 4 4 4 0 BLOC-1-related complex sub-unit 8 IFT57 PF10498.9 gi|344211535|ref|YP_004795855.1| - 0.73 8.7 12.2 0.072 12.0 0.4 2.8 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 Sec34 PF04136.15 gi|344211535|ref|YP_004795855.1| - 0.78 9.6 7.7 6.6 6.6 0.3 3.0 2 1 1 3 3 3 0 Sec34-like family Fzo_mitofusin PF04799.13 gi|344211535|ref|YP_004795855.1| - 1 8.9 7.8 3 7.4 0.4 3.3 3 1 1 4 4 4 0 fzo-like conserved region WXG100 PF06013.12 gi|344211535|ref|YP_004795855.1| - 1.1 9.5 14.4 17 5.7 0.0 5.1 4 1 0 4 4 4 0 Proteins of 100 residues with WXG LUC7 PF03194.15 gi|344211535|ref|YP_004795855.1| - 5.2 6.7 10.9 22 4.6 0.1 2.8 1 1 0 2 2 2 0 LUC7 N_terminus Peripla_BP_6 PF13458.6 gi|344211536|ref|YP_004795856.1| - 2.5e-57 195.1 5.5 3.2e-57 194.8 5.5 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344211536|ref|YP_004795856.1| - 2.8e-16 59.5 1.1 5.8e-16 58.4 1.1 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|344211536|ref|YP_004795856.1| - 9.7e-07 28.2 0.0 2.4e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 Receptor family ligand binding region PfkB PF00294.24 gi|344211537|ref|YP_004795857.1| - 3.5e-44 151.3 0.1 4.2e-44 151.1 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PK PF00224.21 gi|344211538|ref|YP_004795858.1| - 1e-111 373.2 4.2 1.8e-111 372.4 4.2 1.3 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|344211538|ref|YP_004795858.1| - 1.1e-28 99.8 0.6 2.6e-28 98.6 0.6 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|344211538|ref|YP_004795858.1| - 4.2e-12 45.6 0.2 4.2e-12 45.6 0.2 3.6 5 0 0 5 5 5 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|344211538|ref|YP_004795858.1| - 0.034 13.3 1.6 0.088 11.9 0.3 2.2 1 1 0 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family T2SSF PF00482.23 gi|344211538|ref|YP_004795858.1| - 0.24 11.4 1.0 13 5.8 0.0 3.3 2 1 1 3 3 3 0 Type II secretion system (T2SS), protein F LpxI_C PF06230.11 gi|344211538|ref|YP_004795858.1| - 0.55 10.1 3.6 3.7 7.4 1.2 2.9 2 1 0 2 2 2 0 LpxI C-terminal domain ROK PF00480.20 gi|344211539|ref|YP_004795859.1| - 7.9e-51 173.3 0.1 9.4e-51 173.0 0.1 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|344211539|ref|YP_004795859.1| - 1.3e-05 24.9 0.1 4.6e-05 23.1 0.1 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 gi|344211539|ref|YP_004795859.1| - 2.8e-05 23.8 0.1 8.2e-05 22.2 0.1 1.7 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family AAA_16 PF13191.6 gi|344211540|ref|YP_004795860.1| - 1.8e-09 38.2 0.4 7.9e-09 36.1 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211540|ref|YP_004795860.1| - 2.6e-07 31.0 0.0 7.4e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|344211540|ref|YP_004795860.1| - 2.3e-05 23.9 0.0 4.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|344211540|ref|YP_004795860.1| - 0.00016 21.7 0.0 0.00034 20.6 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_assoc_2 PF16193.5 gi|344211540|ref|YP_004795860.1| - 0.0093 16.3 0.2 0.023 15.0 0.2 1.6 1 0 0 1 1 1 1 AAA C-terminal domain DUF815 PF05673.13 gi|344211540|ref|YP_004795860.1| - 0.044 12.9 0.0 0.096 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA PF00004.29 gi|344211540|ref|YP_004795860.1| - 0.064 13.7 0.0 0.15 12.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|344211540|ref|YP_004795860.1| - 0.068 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PIGA PF08288.12 gi|344211540|ref|YP_004795860.1| - 0.096 13.3 0.0 0.18 12.4 0.0 1.4 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) AAA_19 PF13245.6 gi|344211540|ref|YP_004795860.1| - 0.12 12.7 0.0 0.27 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|344211540|ref|YP_004795860.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF2530 PF10745.9 gi|344211541|ref|YP_004795861.1| - 1.4 9.2 0.0 1.4 9.2 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2530) FGGY_N PF00370.21 gi|344211542|ref|YP_004795862.1| - 1.6e-67 227.7 0.1 2.1e-67 227.3 0.1 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|344211542|ref|YP_004795862.1| - 8.7e-58 195.3 1.6 1.5e-57 194.6 1.6 1.4 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain MCPsignal PF00015.21 gi|344211543|ref|YP_004795863.1| - 4.1e-42 143.9 39.4 2e-41 141.7 19.1 3.5 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.6 gi|344211543|ref|YP_004795863.1| - 4.6e-38 131.7 0.0 6e-37 128.0 0.0 2.4 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344211543|ref|YP_004795863.1| - 7.2e-21 75.4 0.0 1.1e-20 74.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF1664 PF07889.12 gi|344211543|ref|YP_004795863.1| - 8.2e-07 29.1 24.5 0.0023 18.0 4.8 5.1 4 1 1 5 5 5 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|344211543|ref|YP_004795863.1| - 2.3e-06 27.7 32.1 0.00011 22.4 4.2 5.4 1 1 3 4 4 4 2 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 gi|344211543|ref|YP_004795863.1| - 0.0032 18.0 6.1 0.0032 18.0 6.1 5.5 4 2 1 5 5 4 1 Syntaxin 6, N-terminal Filament PF00038.21 gi|344211543|ref|YP_004795863.1| - 0.0045 16.6 22.2 0.019 14.6 6.0 3.1 2 2 1 3 3 3 2 Intermediate filament protein Med9 PF07544.13 gi|344211543|ref|YP_004795863.1| - 0.02 14.9 0.0 0.02 14.9 0.0 2.9 3 1 0 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 EzrA PF06160.12 gi|344211543|ref|YP_004795863.1| - 0.029 12.6 16.8 0.061 11.5 0.3 2.8 3 0 0 3 3 3 0 Septation ring formation regulator, EzrA Seryl_tRNA_N PF02403.22 gi|344211543|ref|YP_004795863.1| - 0.029 14.6 23.4 0.024 14.8 1.9 4.9 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain TMPIT PF07851.13 gi|344211543|ref|YP_004795863.1| - 0.052 12.8 6.2 2.1 7.5 0.1 2.6 2 0 0 2 2 2 0 TMPIT-like protein Prp19 PF08606.11 gi|344211543|ref|YP_004795863.1| - 0.06 13.3 0.4 0.3 11.1 0.1 2.4 2 0 0 2 2 1 0 Prp19/Pso4-like Troponin PF00992.20 gi|344211543|ref|YP_004795863.1| - 0.07 13.4 4.3 1.2 9.4 1.6 2.8 2 0 0 2 2 2 0 Troponin Lzipper-MIP1 PF14389.6 gi|344211543|ref|YP_004795863.1| - 0.082 13.2 1.9 0.22 11.8 0.1 2.7 3 0 0 3 3 1 0 Leucine-zipper of ternary complex factor MIP1 DUF2959 PF11172.8 gi|344211543|ref|YP_004795863.1| - 0.14 12.3 26.6 0.019 15.1 7.3 4.4 2 1 2 4 4 4 0 Protein of unknown function (DUF2959) Dynein_C PF18199.1 gi|344211543|ref|YP_004795863.1| - 0.17 11.1 1.0 0.37 9.9 1.0 1.5 1 0 0 1 1 1 0 Dynein heavy chain C-terminal domain BLOC1_2 PF10046.9 gi|344211543|ref|YP_004795863.1| - 0.18 12.2 25.0 1.3 9.3 2.7 6.0 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.9 gi|344211543|ref|YP_004795863.1| - 0.38 9.8 7.7 0.96 8.5 0.6 3.0 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Prominin PF05478.11 gi|344211543|ref|YP_004795863.1| - 0.58 8.1 12.5 0.81 7.6 7.3 2.3 1 1 1 2 2 2 0 Prominin Ferritin PF00210.24 gi|344211543|ref|YP_004795863.1| - 0.74 9.7 6.5 0.37 10.7 2.3 2.6 1 1 0 2 2 2 0 Ferritin-like domain Vps51 PF08700.11 gi|344211543|ref|YP_004795863.1| - 0.85 9.7 10.6 3.6 7.7 0.2 4.8 5 1 0 5 5 5 0 Vps51/Vps67 DUF4407 PF14362.6 gi|344211543|ref|YP_004795863.1| - 0.95 8.8 33.8 2.3 7.5 14.1 3.2 1 1 1 2 2 1 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 gi|344211543|ref|YP_004795863.1| - 1.5 8.8 33.1 0.47 10.5 3.2 4.7 3 2 2 5 5 5 0 Laminin Domain II CorA PF01544.18 gi|344211543|ref|YP_004795863.1| - 1.6 8.0 13.1 4.7 6.4 1.2 3.0 2 1 0 2 2 2 0 CorA-like Mg2+ transporter protein RPW8 PF05659.11 gi|344211543|ref|YP_004795863.1| - 1.7 8.3 4.1 30 4.3 0.1 3.7 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Spc7 PF08317.11 gi|344211543|ref|YP_004795863.1| - 1.8 7.4 26.4 0.11 11.4 1.3 3.5 3 1 0 3 3 3 0 Spc7 kinetochore protein TRPM_tetra PF16519.5 gi|344211543|ref|YP_004795863.1| - 3.3 7.9 12.9 3.8 7.7 1.8 4.7 4 1 0 5 5 4 0 Tetramerisation domain of TRPM APG6_N PF17675.1 gi|344211543|ref|YP_004795863.1| - 3.7 8.1 28.4 6.5 7.3 4.7 4.4 2 1 2 4 4 4 0 Apg6 coiled-coil region IFT57 PF10498.9 gi|344211543|ref|YP_004795863.1| - 4.1 6.3 18.3 0.59 9.1 3.1 3.0 2 2 0 2 2 2 0 Intra-flagellar transport protein 57 Occludin_ELL PF07303.13 gi|344211543|ref|YP_004795863.1| - 4.8 8.0 7.1 1e+02 3.7 0.1 5.1 4 2 2 7 7 5 0 Occludin homology domain DASH_Dam1 PF08653.10 gi|344211543|ref|YP_004795863.1| - 4.9 7.0 4.6 29 4.5 0.0 4.1 4 1 0 4 4 4 0 DASH complex subunit Dam1 BAR_2 PF10455.9 gi|344211543|ref|YP_004795863.1| - 5.2 6.1 13.3 0.41 9.7 0.2 2.7 3 0 0 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Baculo_PEP_C PF04513.12 gi|344211543|ref|YP_004795863.1| - 5.7 7.0 27.2 2.1 8.4 0.2 5.2 3 1 2 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|344211543|ref|YP_004795863.1| - 6 7.4 29.3 12 6.4 0.1 6.4 5 1 2 7 7 7 0 Nucleopolyhedrovirus P10 protein YkyA PF10368.9 gi|344211543|ref|YP_004795863.1| - 6.2 6.5 19.7 3.1 7.4 0.2 3.8 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein Mod_r PF07200.13 gi|344211543|ref|YP_004795863.1| - 7.6 6.6 18.4 47 4.1 0.2 4.6 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Not3 PF04065.15 gi|344211543|ref|YP_004795863.1| - 7.6 5.9 20.3 4.9 6.5 1.2 3.4 1 1 2 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component DUF4200 PF13863.6 gi|344211543|ref|YP_004795863.1| - 7.8 6.9 15.4 6.5 7.2 0.3 4.4 2 1 2 4 4 4 0 Domain of unknown function (DUF4200) Fib_alpha PF08702.10 gi|344211543|ref|YP_004795863.1| - 10 6.3 13.4 26 5.0 0.7 3.6 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family DAO PF01266.24 gi|344211544|ref|YP_004795864.1| - 1e-53 183.2 0.9 1.7e-53 182.5 0.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|344211544|ref|YP_004795864.1| - 1.1e-10 41.7 1.1 3e-10 40.3 1.1 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|344211544|ref|YP_004795864.1| - 1.4e-08 34.4 0.7 6e-08 32.3 0.7 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344211544|ref|YP_004795864.1| - 1.6e-08 34.0 6.0 2.8e-07 30.0 6.0 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|344211544|ref|YP_004795864.1| - 1.9e-06 27.4 0.9 0.015 14.6 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 gi|344211544|ref|YP_004795864.1| - 0.00059 19.8 0.3 0.0012 18.8 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|344211544|ref|YP_004795864.1| - 0.0035 17.5 3.0 0.0071 16.5 0.6 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain DAO_C PF16901.5 gi|344211544|ref|YP_004795864.1| - 0.0053 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase Pyr_redox PF00070.27 gi|344211544|ref|YP_004795864.1| - 0.012 16.2 2.7 0.029 14.9 0.5 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|344211544|ref|YP_004795864.1| - 0.016 14.3 1.5 0.74 8.8 0.2 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.16 gi|344211544|ref|YP_004795864.1| - 0.075 12.7 0.3 0.17 11.5 0.3 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_oxidored PF12831.7 gi|344211544|ref|YP_004795864.1| - 0.092 12.1 6.6 0.67 9.2 6.5 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|344211544|ref|YP_004795864.1| - 0.11 12.5 3.5 6.4 6.8 0.4 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|344211544|ref|YP_004795864.1| - 0.21 10.3 1.2 0.4 9.3 0.2 1.8 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.22 gi|344211544|ref|YP_004795864.1| - 0.37 9.8 3.4 2.5 7.1 1.5 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|344211544|ref|YP_004795864.1| - 0.41 9.9 1.9 0.89 8.8 0.5 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344211545|ref|YP_004795865.1| - 1.5e-39 136.3 0.2 1.7e-39 136.1 0.2 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|344211545|ref|YP_004795865.1| - 5.1e-07 29.6 4.4 1.3e-05 25.0 4.4 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|344211545|ref|YP_004795865.1| - 2.9e-06 26.9 0.9 1.2e-05 24.9 1.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|344211545|ref|YP_004795865.1| - 9.5e-06 25.0 0.2 0.00043 19.6 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344211545|ref|YP_004795865.1| - 4.7e-05 22.7 2.6 5.2e-05 22.5 0.4 2.2 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|344211545|ref|YP_004795865.1| - 0.0002 20.2 0.0 0.04 12.6 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|344211545|ref|YP_004795865.1| - 0.0013 18.1 0.3 0.0044 16.3 0.6 1.7 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|344211545|ref|YP_004795865.1| - 0.0015 17.9 0.6 0.0028 17.0 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|344211545|ref|YP_004795865.1| - 0.0068 16.9 0.1 0.035 14.7 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|344211545|ref|YP_004795865.1| - 0.011 15.9 1.0 0.027 14.7 1.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|344211545|ref|YP_004795865.1| - 0.058 13.8 0.1 0.15 12.5 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|344211545|ref|YP_004795865.1| - 0.15 11.9 0.2 0.23 11.3 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CCG PF02754.16 gi|344211546|ref|YP_004795866.1| - 1.5e-21 76.4 1.8 2.6e-10 40.4 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|344211546|ref|YP_004795866.1| - 6.7e-10 39.3 14.4 3.3e-09 37.0 6.9 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344211546|ref|YP_004795866.1| - 1.2e-06 29.0 6.0 1.2e-06 29.0 6.0 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344211546|ref|YP_004795866.1| - 0.00011 22.8 9.9 0.00011 22.8 9.9 3.1 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344211546|ref|YP_004795866.1| - 0.0011 19.1 17.4 0.011 15.8 12.7 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain DUF3390 PF11870.8 gi|344211546|ref|YP_004795866.1| - 0.0021 18.4 0.1 0.0039 17.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3390) Fer4_9 PF13187.6 gi|344211546|ref|YP_004795866.1| - 0.0024 18.0 11.2 0.0024 18.0 11.2 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344211546|ref|YP_004795866.1| - 0.23 12.4 16.0 0.41 11.6 10.8 3.7 4 1 1 5 5 5 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|344211546|ref|YP_004795866.1| - 2.7 8.2 13.9 1.5 9.0 1.2 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|344211546|ref|YP_004795866.1| - 7.9 6.7 13.5 0.48 10.6 0.9 3.5 3 1 1 4 4 4 0 4Fe-4S dicluster domain Usp PF00582.26 gi|344211547|ref|YP_004795867.1| - 8.8e-19 68.4 0.6 1.1e-18 68.1 0.6 1.1 1 0 0 1 1 1 1 Universal stress protein family PEPcase PF00311.17 gi|344211548|ref|YP_004795868.1| - 3.3e-242 806.0 0.3 4.4e-242 805.6 0.3 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|344211548|ref|YP_004795868.1| - 0.0007 18.2 0.1 0.0021 16.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase COMMD1_N PF17221.3 gi|344211548|ref|YP_004795868.1| - 0.096 13.0 0.2 26 5.2 0.0 3.6 3 0 0 3 3 3 0 COMMD1 N-terminal domain Activator-TraM PF11657.8 gi|344211548|ref|YP_004795868.1| - 0.6 9.9 5.7 0.17 11.7 0.5 2.6 3 0 0 3 3 3 0 Transcriptional activator TraM FUSC PF04632.12 gi|344211548|ref|YP_004795868.1| - 1.3 7.5 5.9 3.3 6.1 5.9 1.7 1 0 0 1 1 1 0 Fusaric acid resistance protein family HTH_10 PF04967.12 gi|344211549|ref|YP_004795869.1| - 1.5e-16 60.0 0.0 2.8e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344211549|ref|YP_004795869.1| - 0.0051 16.7 2.9 0.0051 16.7 2.9 2.1 1 1 1 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|344211549|ref|YP_004795869.1| - 0.0089 15.9 0.0 0.044 13.7 0.0 2.2 2 1 0 2 2 2 1 MarR family UPF0122 PF04297.14 gi|344211549|ref|YP_004795869.1| - 0.086 13.1 0.0 0.3 11.3 0.0 1.8 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_5 PF01022.20 gi|344211549|ref|YP_004795869.1| - 0.089 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF434 PF04256.12 gi|344211549|ref|YP_004795869.1| - 0.18 11.5 0.0 6.9 6.4 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF434) Peripla_BP_6 PF13458.6 gi|344211551|ref|YP_004795871.1| - 1.9e-69 235.0 12.0 2.4e-69 234.6 12.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344211551|ref|YP_004795871.1| - 1.5e-15 57.1 1.5 3e-15 56.1 1.5 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.27 gi|344211552|ref|YP_004795872.1| - 2.6e-26 92.8 0.0 3.4e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|344211552|ref|YP_004795872.1| - 8.5e-11 41.5 0.6 2.3e-10 40.1 0.4 1.9 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|344211552|ref|YP_004795872.1| - 1.9e-07 31.2 0.8 0.0053 16.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|344211552|ref|YP_004795872.1| - 8.6e-05 23.1 0.0 9.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344211552|ref|YP_004795872.1| - 0.00019 21.0 0.0 0.00028 20.4 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344211552|ref|YP_004795872.1| - 0.0011 19.2 0.3 0.043 14.1 0.3 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344211552|ref|YP_004795872.1| - 0.003 17.5 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|344211552|ref|YP_004795872.1| - 0.003 17.6 0.1 0.011 15.9 0.1 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|344211552|ref|YP_004795872.1| - 0.0078 16.6 0.3 0.015 15.6 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|344211552|ref|YP_004795872.1| - 0.02 14.6 0.1 0.038 13.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|344211552|ref|YP_004795872.1| - 0.045 13.4 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|344211552|ref|YP_004795872.1| - 0.059 13.2 0.0 0.09 12.6 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|344211552|ref|YP_004795872.1| - 0.071 12.8 0.0 0.12 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|344211552|ref|YP_004795872.1| - 0.12 12.8 0.1 0.98 9.8 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|344211552|ref|YP_004795872.1| - 0.17 11.5 0.0 0.33 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRCR PF00530.18 gi|344211552|ref|YP_004795872.1| - 0.22 12.1 0.0 0.34 11.4 0.0 1.4 1 0 0 1 1 1 0 Scavenger receptor cysteine-rich domain ABC_tran PF00005.27 gi|344211553|ref|YP_004795873.1| - 4.6e-29 101.7 0.0 6.1e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211553|ref|YP_004795873.1| - 9.3e-09 35.5 0.1 0.0014 18.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|344211553|ref|YP_004795873.1| - 0.0054 17.0 0.0 0.013 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344211553|ref|YP_004795873.1| - 0.011 16.1 0.3 0.017 15.5 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|344211553|ref|YP_004795873.1| - 0.023 14.4 1.0 0.092 12.4 1.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|344211553|ref|YP_004795873.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|344211553|ref|YP_004795873.1| - 0.052 13.5 0.1 0.15 12.0 0.0 1.7 2 0 0 2 2 2 0 NACHT domain SMC_N PF02463.19 gi|344211553|ref|YP_004795873.1| - 0.053 13.0 0.1 7.5 5.9 0.1 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|344211553|ref|YP_004795873.1| - 0.058 13.3 0.1 0.52 10.2 0.1 2.0 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|344211553|ref|YP_004795873.1| - 0.085 12.4 0.2 0.27 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|344211553|ref|YP_004795873.1| - 0.096 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3584 PF12128.8 gi|344211553|ref|YP_004795873.1| - 0.096 10.2 0.2 0.12 9.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.22 gi|344211553|ref|YP_004795873.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|344211553|ref|YP_004795873.1| - 0.12 12.9 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|344211553|ref|YP_004795873.1| - 0.18 11.7 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|344211553|ref|YP_004795873.1| - 0.24 10.9 0.0 0.36 10.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_2 PF02653.16 gi|344211554|ref|YP_004795874.1| - 1.3e-38 132.7 40.4 1.7e-38 132.3 40.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF485 PF04341.12 gi|344211554|ref|YP_004795874.1| - 0.059 13.3 0.2 0.059 13.3 0.2 4.3 5 1 1 6 6 6 0 Protein of unknown function, DUF485 BPD_transp_2 PF02653.16 gi|344211555|ref|YP_004795875.1| - 4e-31 108.2 28.0 6e-31 107.6 28.0 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Abhydrolase_1 PF00561.20 gi|344211556|ref|YP_004795876.1| - 4.9e-25 88.6 0.0 2.7e-17 63.3 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|344211556|ref|YP_004795876.1| - 5.8e-20 72.8 0.3 6.9e-20 72.6 0.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|344211556|ref|YP_004795876.1| - 5.8e-17 61.8 0.0 7.3e-09 35.2 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|344211556|ref|YP_004795876.1| - 3.1e-07 30.4 0.0 6e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|344211556|ref|YP_004795876.1| - 5.4e-06 26.3 0.0 0.14 12.0 0.0 2.4 3 0 0 3 3 3 2 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|344211556|ref|YP_004795876.1| - 0.00014 21.4 0.0 0.0013 18.3 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family UPF0227 PF05728.12 gi|344211556|ref|YP_004795876.1| - 0.00015 21.7 0.0 0.27 11.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0227) Ndr PF03096.14 gi|344211556|ref|YP_004795876.1| - 0.0027 16.5 0.0 0.0034 16.1 0.0 1.2 1 0 0 1 1 1 1 Ndr family DUF915 PF06028.11 gi|344211556|ref|YP_004795876.1| - 0.014 14.7 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Abhydrolase_2 PF02230.16 gi|344211556|ref|YP_004795876.1| - 0.036 13.9 0.1 0.43 10.4 0.0 2.4 2 1 0 2 2 2 0 Phospholipase/Carboxylesterase FSH1 PF03959.13 gi|344211556|ref|YP_004795876.1| - 0.042 13.5 0.0 0.093 12.4 0.0 1.5 2 0 0 2 2 2 0 Serine hydrolase (FSH1) DLH PF01738.18 gi|344211556|ref|YP_004795876.1| - 0.097 12.2 0.0 4.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family AMP-binding PF00501.28 gi|344211557|ref|YP_004795877.1| - 3.2e-78 263.2 0.7 6e-78 262.3 0.7 1.4 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344211557|ref|YP_004795877.1| - 7e-13 49.4 0.0 1.4e-12 48.4 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PAS_4 PF08448.10 gi|344211558|ref|YP_004795878.1| - 7.1e-25 87.4 2.4 2e-11 44.1 0.3 2.8 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|344211558|ref|YP_004795878.1| - 6.1e-23 80.9 0.0 3.3e-17 62.5 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|344211558|ref|YP_004795878.1| - 3.8e-18 65.7 0.0 2.7e-08 34.0 0.0 3.4 2 1 1 3 3 3 2 PAS domain PAS PF00989.25 gi|344211558|ref|YP_004795878.1| - 1.1e-13 51.1 0.2 7.7e-06 25.9 0.1 3.0 3 1 0 3 3 3 2 PAS fold HATPase_c PF02518.26 gi|344211558|ref|YP_004795878.1| - 1.2e-13 51.5 0.1 2.6e-13 50.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211558|ref|YP_004795878.1| - 9.7e-13 48.0 1.5 9.7e-13 48.0 1.5 2.5 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|344211558|ref|YP_004795878.1| - 1.1e-06 28.8 0.0 2.7e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.7 gi|344211558|ref|YP_004795878.1| - 0.00062 19.7 1.5 0.055 13.5 0.0 3.3 3 0 0 3 3 3 1 PAS domain OKR_DC_1_N PF03709.15 gi|344211558|ref|YP_004795878.1| - 0.14 12.5 0.0 0.45 10.8 0.0 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain MR_MLE_C PF13378.6 gi|344211559|ref|YP_004795879.1| - 4.7e-54 183.3 0.5 6.8e-54 182.7 0.5 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344211559|ref|YP_004795879.1| - 3.2e-14 53.1 0.0 7.5e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SBP_bac_11 PF13531.6 gi|344211559|ref|YP_004795879.1| - 0.18 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein NosD PF05048.13 gi|344211560|ref|YP_004795880.1| - 4.7e-12 45.7 1.9 2.6e-05 23.6 0.5 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|344211560|ref|YP_004795880.1| - 9.9e-10 38.5 5.3 7.5e-05 22.6 0.4 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|344211560|ref|YP_004795880.1| - 0.00013 21.4 5.5 0.0016 17.8 0.4 2.6 1 1 0 2 2 2 2 Protein of unknown function (DUF1565) DUF5123 PF17161.4 gi|344211560|ref|YP_004795880.1| - 0.00071 20.6 5.1 0.048 14.7 0.1 3.1 3 0 0 3 3 3 2 Domain of unknown function (DUF5123) Bac_rhamnosid_N PF08531.10 gi|344211560|ref|YP_004795880.1| - 0.073 12.9 4.0 0.3 10.9 0.4 2.6 1 1 1 2 2 2 0 Alpha-L-rhamnosidase N-terminal domain CBM39 PF15886.5 gi|344211560|ref|YP_004795880.1| - 0.53 10.2 3.9 1.4 8.8 0.3 3.5 2 2 1 3 3 3 0 Carbohydrate binding domain (family 32) ResIII PF04851.15 gi|344211561|ref|YP_004795881.1| - 1.2e-24 87.3 0.0 7.5e-24 84.6 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit XPB_DRD PF18458.1 gi|344211561|ref|YP_004795881.1| - 1.1e-20 73.2 1.3 3.3e-20 71.7 1.3 1.9 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain ERCC3_RAD25_C PF16203.5 gi|344211561|ref|YP_004795881.1| - 5.7e-20 71.6 0.1 7.8e-20 71.1 0.1 1.1 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|344211561|ref|YP_004795881.1| - 3.1e-15 56.5 0.0 1.8e-14 54.0 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|344211561|ref|YP_004795881.1| - 1.7e-08 34.4 0.0 1e-07 31.9 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.6 gi|344211561|ref|YP_004795881.1| - 0.016 15.4 0.0 3.8 7.6 0.0 2.7 3 0 0 3 3 3 0 Helicase C-terminal domain DUF790 PF05626.11 gi|344211562|ref|YP_004795882.1| - 2.6e-129 431.4 0.0 6.5e-129 430.0 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF790) NTP_transf_5 PF14907.6 gi|344211563|ref|YP_004795883.1| - 6.5e-65 219.2 0.0 8.2e-65 218.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Hpr_kinase_C PF07475.12 gi|344211564|ref|YP_004795884.1| - 1.5e-06 27.9 0.1 2.3e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.6 gi|344211564|ref|YP_004795884.1| - 0.037 13.8 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|344211564|ref|YP_004795884.1| - 0.052 12.9 0.0 0.088 12.1 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_16 PF13191.6 gi|344211564|ref|YP_004795884.1| - 0.054 13.9 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain PEPCK_ATP PF01293.20 gi|344211564|ref|YP_004795884.1| - 0.076 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase ABC_tran PF00005.27 gi|344211564|ref|YP_004795884.1| - 0.088 13.3 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|344211564|ref|YP_004795884.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|344211564|ref|YP_004795884.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region PqqD PF05402.12 gi|344211565|ref|YP_004795885.1| - 1.6e-15 57.2 0.1 1.8e-15 57.0 0.1 1.0 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) ABC_tran PF00005.27 gi|344211566|ref|YP_004795886.1| - 2e-31 109.4 0.0 3.5e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|344211566|ref|YP_004795886.1| - 1e-09 38.5 2.4 1.7e-09 37.7 2.4 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|344211566|ref|YP_004795886.1| - 1.8e-05 24.3 2.5 0.00022 20.8 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344211566|ref|YP_004795886.1| - 0.0096 16.3 0.2 0.024 15.0 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211566|ref|YP_004795886.1| - 0.025 14.9 0.6 0.13 12.5 0.3 2.2 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|344211566|ref|YP_004795886.1| - 0.064 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|344211566|ref|YP_004795886.1| - 0.16 12.1 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Helicase HerA, central domain Methyltranf_PUA PF13636.6 gi|344211567|ref|YP_004795887.1| - 2.2e-12 46.8 0.1 3.4e-12 46.2 0.1 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Methyltr_RsmB-F PF01189.17 gi|344211568|ref|YP_004795888.1| - 3.5e-50 170.4 0.0 4.7e-50 170.0 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|344211568|ref|YP_004795888.1| - 7.9e-11 42.3 0.0 5.4e-10 39.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|344211568|ref|YP_004795888.1| - 0.00013 22.1 0.0 0.00021 21.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|344211568|ref|YP_004795888.1| - 0.0042 16.9 0.0 0.0077 16.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344211568|ref|YP_004795888.1| - 0.053 13.3 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PAC2 PF09754.9 gi|344211569|ref|YP_004795889.1| - 7.7e-41 140.4 0.0 9.3e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Peptidase_S49 PF01343.18 gi|344211570|ref|YP_004795890.1| - 1.6e-40 138.6 0.0 2.3e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 DUF3500 PF12006.8 gi|344211570|ref|YP_004795890.1| - 0.08 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3500) CLP_protease PF00574.23 gi|344211570|ref|YP_004795890.1| - 0.097 12.5 0.1 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Clp protease Pilin_N PF07790.11 gi|344211570|ref|YP_004795890.1| - 0.32 11.9 0.1 0.32 11.9 0.1 2.1 2 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal DUF373 PF04123.13 gi|344211571|ref|YP_004795891.1| - 3.7e-100 335.6 6.4 4.6e-100 335.3 6.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) SUR7 PF06687.12 gi|344211571|ref|YP_004795891.1| - 0.03 13.9 0.5 0.057 13.0 0.1 1.5 1 1 0 1 1 1 0 SUR7/PalI family DUF5353 PF17304.2 gi|344211571|ref|YP_004795891.1| - 2.7 7.8 6.4 1.2 8.9 0.4 3.1 3 0 0 3 3 3 0 Family of unknown function (DUF5353) Diphthami_syn_2 PF01902.17 gi|344211572|ref|YP_004795892.1| - 1e-58 198.4 0.0 2e-58 197.5 0.0 1.4 1 1 0 1 1 1 1 Diphthamide synthase ThiI PF02568.14 gi|344211572|ref|YP_004795892.1| - 0.011 15.3 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|344211572|ref|YP_004795892.1| - 0.06 12.8 0.0 0.094 12.2 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|344211572|ref|YP_004795892.1| - 0.31 9.8 0.0 0.43 9.3 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase NTP_transferase PF00483.23 gi|344211573|ref|YP_004795893.1| - 2.9e-27 95.9 0.0 3.9e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344211573|ref|YP_004795893.1| - 0.00066 20.1 0.0 0.00072 19.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain NUDIX PF00293.28 gi|344211574|ref|YP_004795894.1| - 1.4e-09 38.1 0.1 2.3e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain GvpG PF05120.12 gi|344211574|ref|YP_004795894.1| - 0.11 12.5 0.0 0.55 10.3 0.0 2.0 2 0 0 2 2 2 0 Gas vesicle protein G Glyoxalase_4 PF13669.6 gi|344211575|ref|YP_004795895.1| - 7.8e-15 55.1 0.0 9.8e-15 54.8 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|344211575|ref|YP_004795895.1| - 2.1e-09 37.7 0.2 2.2e-09 37.6 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|344211575|ref|YP_004795895.1| - 1.4e-05 25.3 0.0 1.6e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|344211575|ref|YP_004795895.1| - 0.0063 17.3 0.1 0.0087 16.8 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain MM_CoA_mutase PF01642.22 gi|344211576|ref|YP_004795896.1| - 7e-226 750.7 3.9 8.5e-226 750.4 3.9 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase FKBP_C PF00254.28 gi|344211577|ref|YP_004795897.1| - 2e-24 85.7 0.1 3e-24 85.1 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase TOBE PF03459.17 gi|344211577|ref|YP_004795897.1| - 0.082 13.2 0.7 0.32 11.3 0.1 2.1 2 0 0 2 2 2 0 TOBE domain Acetyltransf_1 PF00583.25 gi|344211578|ref|YP_004795898.1| - 1.7e-09 37.9 0.1 2.6e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344211578|ref|YP_004795898.1| - 1e-05 25.5 0.0 1.4e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211578|ref|YP_004795898.1| - 2.5e-05 24.6 0.0 3.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344211578|ref|YP_004795898.1| - 0.0018 18.4 0.0 0.0032 17.6 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|344211578|ref|YP_004795898.1| - 0.0065 17.1 0.1 0.0089 16.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344211578|ref|YP_004795898.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_10 PF04967.12 gi|344211579|ref|YP_004795899.1| - 1.5e-17 63.1 0.1 5e-17 61.4 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain UPF0122 PF04297.14 gi|344211579|ref|YP_004795899.1| - 0.0085 16.3 0.0 0.02 15.1 0.0 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 gi|344211579|ref|YP_004795899.1| - 0.031 13.8 0.0 0.076 12.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|344211579|ref|YP_004795899.1| - 0.098 12.6 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.27 gi|344211580|ref|YP_004795900.1| - 1.4e-28 100.1 0.0 1.9e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211580|ref|YP_004795900.1| - 4.8e-07 29.9 0.3 0.018 14.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211580|ref|YP_004795900.1| - 0.0014 18.2 0.2 0.082 12.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arylesterase PF01731.20 gi|344211580|ref|YP_004795900.1| - 0.024 14.8 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Arylesterase AAA_23 PF13476.6 gi|344211580|ref|YP_004795900.1| - 0.052 14.1 0.0 0.084 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|344211581|ref|YP_004795901.1| - 1.8e-26 93.3 0.0 2.4e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|344211581|ref|YP_004795901.1| - 2.4e-06 28.2 1.0 4.1e-06 27.5 1.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|344211581|ref|YP_004795901.1| - 1.2e-05 25.3 1.1 0.00075 19.4 0.2 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|344211581|ref|YP_004795901.1| - 1.9e-05 24.6 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|344211581|ref|YP_004795901.1| - 0.00024 20.4 0.0 0.00054 19.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_27 PF13514.6 gi|344211581|ref|YP_004795901.1| - 0.00033 20.3 0.1 0.00073 19.2 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|344211581|ref|YP_004795901.1| - 0.00089 18.0 0.0 0.0011 17.7 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|344211581|ref|YP_004795901.1| - 0.0024 17.6 0.1 0.0047 16.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|344211581|ref|YP_004795901.1| - 0.0024 17.9 0.0 0.87 9.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|344211581|ref|YP_004795901.1| - 0.004 16.9 0.1 0.0082 15.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|344211581|ref|YP_004795901.1| - 0.004 16.6 0.1 0.0078 15.7 0.1 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|344211581|ref|YP_004795901.1| - 0.0042 16.8 0.0 0.011 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344211581|ref|YP_004795901.1| - 0.0046 17.1 0.0 0.0071 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344211581|ref|YP_004795901.1| - 0.006 17.0 0.0 0.0093 16.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211581|ref|YP_004795901.1| - 0.0072 16.6 0.0 0.083 13.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|344211581|ref|YP_004795901.1| - 0.013 15.6 0.3 0.04 14.0 0.1 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|344211581|ref|YP_004795901.1| - 0.017 15.0 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|344211581|ref|YP_004795901.1| - 0.019 14.5 0.2 0.067 12.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|344211581|ref|YP_004795901.1| - 0.029 14.0 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|344211581|ref|YP_004795901.1| - 0.062 13.3 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|344211581|ref|YP_004795901.1| - 0.068 12.2 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.14 gi|344211581|ref|YP_004795901.1| - 0.13 12.2 0.3 1.8 8.5 0.0 2.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|344211581|ref|YP_004795901.1| - 0.14 12.7 0.1 0.24 12.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|344211582|ref|YP_004795902.1| - 6.2e-31 107.5 31.4 1.2e-30 106.6 31.4 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component UPF0220 PF05255.11 gi|344211582|ref|YP_004795902.1| - 4.7 6.7 10.6 3 7.4 0.4 2.9 2 2 1 3 3 3 0 Uncharacterised protein family (UPF0220) BPD_transp_2 PF02653.16 gi|344211583|ref|YP_004795903.1| - 1.5e-31 109.5 39.5 1.9e-31 109.2 39.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|344211584|ref|YP_004795904.1| - 1.8e-37 129.8 6.6 2.3e-37 129.5 6.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344211584|ref|YP_004795904.1| - 2.4e-13 49.8 0.7 5.3e-13 48.7 0.7 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|344211584|ref|YP_004795904.1| - 8.1e-05 21.9 0.0 0.00017 20.8 0.0 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.9 gi|344211584|ref|YP_004795904.1| - 0.14 12.0 4.6 0.37 10.7 4.6 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence adh_short_C2 PF13561.6 gi|344211585|ref|YP_004795905.1| - 1.2e-35 123.2 2.3 1.8e-35 122.6 2.3 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344211585|ref|YP_004795905.1| - 2.7e-31 108.6 0.7 3.3e-31 108.3 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344211585|ref|YP_004795905.1| - 1.2e-05 25.3 0.7 1.7e-05 24.8 0.7 1.4 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.15 gi|344211585|ref|YP_004795905.1| - 0.0069 15.6 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|344211585|ref|YP_004795905.1| - 0.018 14.5 0.3 0.028 13.9 0.3 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family VCBS PF13517.6 gi|344211585|ref|YP_004795905.1| - 5.2 7.7 7.8 0.54 10.9 0.4 2.6 2 1 1 3 3 3 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AMP-binding PF00501.28 gi|344211586|ref|YP_004795906.1| - 4.6e-72 242.9 0.0 6e-72 242.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344211586|ref|YP_004795906.1| - 1.4e-21 77.2 0.1 3.2e-21 76.1 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|344211586|ref|YP_004795906.1| - 1.2e-08 34.7 0.1 1.2e-08 34.7 0.1 3.8 4 1 0 4 4 4 1 Acetyl-coenzyme A synthetase N-terminus AbiEi_4 PF13338.6 gi|344211586|ref|YP_004795906.1| - 0.075 13.2 0.2 0.64 10.2 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin MFS_1 PF07690.16 gi|344211587|ref|YP_004795907.1| - 9.7e-36 123.4 61.4 6e-23 81.3 27.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344211587|ref|YP_004795907.1| - 0.07 12.0 18.2 0.85 8.4 0.0 3.9 2 2 1 4 4 4 0 MFS_1 like family zf-ribbon_3 PF13248.6 gi|344211588|ref|YP_004795908.1| - 0.00014 21.1 4.7 0.0037 16.6 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|344211588|ref|YP_004795908.1| - 0.00016 21.6 2.2 0.00017 21.5 2.2 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|344211588|ref|YP_004795908.1| - 0.00034 20.2 4.9 0.00083 19.0 4.9 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|344211588|ref|YP_004795908.1| - 0.00041 20.3 1.8 0.00042 20.3 1.8 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|344211588|ref|YP_004795908.1| - 0.00049 19.8 2.3 0.00061 19.5 2.3 1.3 1 1 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|344211588|ref|YP_004795908.1| - 0.0025 17.7 0.9 0.068 13.1 0.9 2.0 1 1 0 1 1 1 1 Nudix N-terminal Zn_Tnp_IS91 PF14319.6 gi|344211588|ref|YP_004795908.1| - 0.0026 17.7 2.2 0.0027 17.7 2.2 1.0 1 0 0 1 1 1 1 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|344211588|ref|YP_004795908.1| - 0.0028 17.5 1.7 0.0031 17.4 1.7 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.16 gi|344211588|ref|YP_004795908.1| - 0.0042 16.9 2.2 0.005 16.7 2.2 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.13 gi|344211588|ref|YP_004795908.1| - 0.0066 16.1 1.5 0.0087 15.7 1.5 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|344211588|ref|YP_004795908.1| - 0.0099 15.9 2.3 0.072 13.2 2.3 2.0 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|344211588|ref|YP_004795908.1| - 0.01 15.5 5.1 0.1 12.4 5.1 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L37e PF01907.19 gi|344211588|ref|YP_004795908.1| - 0.011 15.9 1.7 0.012 15.7 1.7 1.1 1 0 0 1 1 1 0 Ribosomal protein L37e zf-HIT PF04438.16 gi|344211588|ref|YP_004795908.1| - 0.012 15.5 3.2 0.1 12.5 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger zinc-ribbons_6 PF07191.12 gi|344211588|ref|YP_004795908.1| - 0.016 15.2 1.0 0.019 15.0 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons Vps36-NZF-N PF16988.5 gi|344211588|ref|YP_004795908.1| - 0.024 14.0 1.3 1.3 8.4 0.1 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Zn_Tnp_IS1595 PF12760.7 gi|344211588|ref|YP_004795908.1| - 0.028 14.4 2.7 0.045 13.7 2.7 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|344211588|ref|YP_004795908.1| - 0.038 13.6 1.9 0.25 11.0 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|344211588|ref|YP_004795908.1| - 0.042 13.7 2.4 0.11 12.4 2.2 1.7 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|344211588|ref|YP_004795908.1| - 0.045 13.5 5.3 1.7 8.4 0.3 2.3 1 1 1 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|344211588|ref|YP_004795908.1| - 0.047 13.2 4.0 0.086 12.4 4.0 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|344211588|ref|YP_004795908.1| - 0.068 13.2 1.0 0.066 13.2 1.0 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-piccolo PF05715.13 gi|344211588|ref|YP_004795908.1| - 0.085 13.0 4.1 1.4 9.1 4.1 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zf-IS66 PF13005.7 gi|344211588|ref|YP_004795908.1| - 0.092 13.2 1.4 1.3 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Sgf11 PF08209.11 gi|344211588|ref|YP_004795908.1| - 0.17 11.5 3.6 0.81 9.3 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.10 gi|344211588|ref|YP_004795908.1| - 0.19 11.9 4.1 0.49 10.6 0.3 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Spt4 PF06093.13 gi|344211588|ref|YP_004795908.1| - 0.2 11.8 2.3 0.47 10.6 2.3 1.6 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-TFIIB PF13453.6 gi|344211588|ref|YP_004795908.1| - 0.23 10.8 2.9 0.48 9.8 2.9 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-HYPF PF07503.12 gi|344211588|ref|YP_004795908.1| - 0.25 11.2 0.5 0.25 11.2 0.5 2.1 1 1 1 2 2 2 0 HypF finger DUF1272 PF06906.11 gi|344211588|ref|YP_004795908.1| - 0.33 11.1 0.3 0.33 11.1 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf_Rg PF17915.1 gi|344211588|ref|YP_004795908.1| - 0.49 9.8 7.6 10 5.6 7.6 2.0 1 1 0 1 1 1 0 Reverse gyrase zinc finger zf-Mss51 PF13824.6 gi|344211588|ref|YP_004795908.1| - 0.5 10.5 5.2 1.3 9.2 0.5 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L32p PF01783.23 gi|344211588|ref|YP_004795908.1| - 0.61 10.4 3.2 1.2 9.4 3.2 1.6 1 1 0 1 1 1 0 Ribosomal L32p protein family PAPS_reduct PF01507.19 gi|344211589|ref|YP_004795909.1| - 5.8e-17 62.3 0.0 7.1e-13 49.0 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|344211589|ref|YP_004795909.1| - 0.023 14.2 0.0 0.092 12.2 0.0 1.8 2 0 0 2 2 2 0 Diphthamide synthase PP-binding_2 PF14573.6 gi|344211589|ref|YP_004795909.1| - 0.15 12.3 0.2 0.34 11.2 0.2 1.6 1 0 0 1 1 1 0 Acyl-carrier SpoIIM PF01944.17 gi|344211590|ref|YP_004795910.1| - 4.1e-25 88.7 10.8 5.1e-25 88.3 10.8 1.1 1 0 0 1 1 1 1 Stage II sporulation protein M Fer2 PF00111.27 gi|344211592|ref|YP_004795912.1| - 2.3e-10 40.3 2.2 3.3e-10 39.8 2.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|344211592|ref|YP_004795912.1| - 0.015 15.3 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.14 gi|344211593|ref|YP_004795913.1| - 4.5e-15 55.4 1.3 1.3e-10 40.8 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|344211593|ref|YP_004795913.1| - 1.7e-10 40.6 7.8 1.5e-07 30.9 0.3 2.6 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|344211593|ref|YP_004795913.1| - 5.6e-09 35.7 3.6 1.4e-07 31.1 3.6 2.4 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|344211593|ref|YP_004795913.1| - 3.2e-08 33.5 7.0 0.0011 18.7 1.1 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|344211593|ref|YP_004795913.1| - 6.6e-08 32.1 5.0 1.7e-05 24.2 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344211593|ref|YP_004795913.1| - 6.9e-08 32.3 10.0 0.00028 20.4 3.2 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|344211593|ref|YP_004795913.1| - 9.8e-07 29.3 9.6 0.00011 22.7 0.8 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344211593|ref|YP_004795913.1| - 2.2e-06 27.0 0.4 3.9e-06 26.2 0.4 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|344211593|ref|YP_004795913.1| - 6.4e-06 25.1 0.4 0.00013 20.8 0.6 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|344211593|ref|YP_004795913.1| - 7.4e-06 26.1 6.1 1.8e-05 24.9 0.7 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|344211593|ref|YP_004795913.1| - 9.3e-05 21.6 2.8 0.03 13.4 0.4 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Thi4 PF01946.17 gi|344211593|ref|YP_004795913.1| - 0.00049 19.4 2.9 0.00053 19.3 1.0 2.0 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|344211593|ref|YP_004795913.1| - 0.0014 18.5 0.0 0.0026 17.7 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|344211593|ref|YP_004795913.1| - 0.0031 17.2 0.0 0.0077 15.9 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|344211593|ref|YP_004795913.1| - 0.0064 15.8 1.4 0.022 14.0 1.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|344211593|ref|YP_004795913.1| - 0.017 14.4 1.3 0.017 14.4 1.3 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|344211593|ref|YP_004795913.1| - 0.043 13.2 0.1 0.15 11.4 0.2 1.7 2 0 0 2 2 2 0 ThiF family Pilin_N PF07790.11 gi|344211594|ref|YP_004795914.1| - 1e-12 48.8 0.1 1.9e-12 47.9 0.1 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PKD PF00801.20 gi|344211594|ref|YP_004795914.1| - 0.056 13.3 0.2 0.33 10.8 0.1 2.2 2 1 0 2 2 2 0 PKD domain Peptidase_M20 PF01546.28 gi|344211595|ref|YP_004795915.1| - 2.3e-26 92.8 6.1 2.3e-26 92.8 6.1 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344211595|ref|YP_004795915.1| - 8.9e-13 48.1 0.5 2.1e-12 46.9 0.5 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribosomal_S10 PF00338.22 gi|344211596|ref|YP_004795916.1| - 2.8e-11 43.5 0.0 3.6e-11 43.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.28 gi|344211597|ref|YP_004795917.1| - 1.8e-17 63.6 0.7 2.1e-17 63.4 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|344211597|ref|YP_004795917.1| - 0.02 15.3 0.1 0.041 14.3 0.0 1.6 1 1 1 2 2 2 0 AAA domain DUF4013 PF13197.6 gi|344211598|ref|YP_004795918.1| - 1.2e-35 122.8 22.7 1.2e-35 122.8 22.7 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) Man-6-P_recep PF02157.15 gi|344211598|ref|YP_004795918.1| - 0.41 9.7 0.5 0.69 8.9 0.5 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate receptor TrmB PF01978.19 gi|344211600|ref|YP_004795920.1| - 0.023 14.6 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SesA PF17107.5 gi|344211600|ref|YP_004795920.1| - 0.072 13.3 0.0 0.11 12.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases MacB_PCD PF12704.7 gi|344211601|ref|YP_004795921.1| - 1.4e-17 64.7 11.4 1.4e-17 64.7 11.4 2.3 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|344211601|ref|YP_004795921.1| - 6.2e-15 55.4 0.8 6.2e-15 55.4 0.8 3.0 3 0 0 3 3 3 1 FtsX-like permease family DUF4376 PF14301.6 gi|344211601|ref|YP_004795921.1| - 0.17 12.3 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4376) ABC_tran PF00005.27 gi|344211602|ref|YP_004795922.1| - 2e-35 122.3 0.0 3.1e-35 121.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|344211602|ref|YP_004795922.1| - 2.4e-05 23.9 0.1 0.0019 17.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|344211602|ref|YP_004795922.1| - 8e-05 22.6 2.4 0.084 12.7 0.5 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344211602|ref|YP_004795922.1| - 8.8e-05 22.2 0.5 0.00015 21.4 0.5 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344211602|ref|YP_004795922.1| - 0.00025 21.0 0.2 0.0004 20.3 0.2 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|344211602|ref|YP_004795922.1| - 0.0011 19.4 0.3 0.002 18.5 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|344211602|ref|YP_004795922.1| - 0.0037 17.0 0.1 0.0087 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|344211602|ref|YP_004795922.1| - 0.017 15.6 0.0 0.025 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344211602|ref|YP_004795922.1| - 0.018 14.7 1.7 0.34 10.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|344211602|ref|YP_004795922.1| - 0.031 14.6 0.1 0.071 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|344211602|ref|YP_004795922.1| - 0.039 13.3 0.2 0.72 9.2 0.1 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SSE PF00437.20 gi|344211602|ref|YP_004795922.1| - 0.049 12.7 0.4 1.3 8.0 0.3 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein cobW PF02492.19 gi|344211602|ref|YP_004795922.1| - 0.081 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|344211602|ref|YP_004795922.1| - 0.11 12.6 0.2 0.26 11.4 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|344211602|ref|YP_004795922.1| - 0.13 12.5 1.2 0.57 10.3 1.2 2.1 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|344211602|ref|YP_004795922.1| - 0.17 12.0 0.6 0.3 11.1 0.6 1.4 1 0 0 1 1 1 0 Dynamin family AAA_15 PF13175.6 gi|344211602|ref|YP_004795922.1| - 0.32 10.6 0.0 0.44 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain LolA_like PF17131.4 gi|344211603|ref|YP_004795923.1| - 4.1e-07 29.9 4.1 1.2e-05 25.2 0.1 2.8 2 1 1 3 3 3 2 Outer membrane lipoprotein-sorting protein DUF2092 PF09865.9 gi|344211603|ref|YP_004795923.1| - 0.0049 16.3 3.5 0.023 14.0 0.0 2.6 2 1 1 3 3 3 2 Predicted periplasmic protein (DUF2092) DUF4367 PF14285.6 gi|344211603|ref|YP_004795923.1| - 0.055 13.9 0.1 0.055 13.9 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4367) LolA PF03548.15 gi|344211603|ref|YP_004795923.1| - 0.12 12.1 0.1 0.32 10.7 0.0 1.8 2 0 0 2 2 2 0 Outer membrane lipoprotein carrier protein LolA Mut7-C PF01927.16 gi|344211604|ref|YP_004795924.1| - 4.8e-42 143.5 0.0 5.3e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|344211604|ref|YP_004795924.1| - 9.8e-06 25.2 0.1 0.00011 21.9 0.1 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF5615) Zn_ribbon_SprT PF17283.2 gi|344211604|ref|YP_004795924.1| - 0.018 14.9 0.2 0.91 9.5 0.4 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|344211604|ref|YP_004795924.1| - 0.065 13.4 0.4 13 6.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Toprim_3 PF13362.6 gi|344211604|ref|YP_004795924.1| - 0.088 13.2 0.1 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 Toprim domain DNA_ligase_ZBD PF03119.16 gi|344211604|ref|YP_004795924.1| - 0.095 12.7 2.9 0.23 11.5 2.9 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DNA_pol_B_thumb PF14791.6 gi|344211605|ref|YP_004795925.1| - 5.6e-22 77.7 0.0 1.5e-21 76.3 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|344211605|ref|YP_004795925.1| - 3.1e-16 59.5 2.1 1.1e-13 51.3 0.1 3.6 2 1 1 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|344211605|ref|YP_004795925.1| - 2e-12 47.5 0.5 1.1e-11 45.1 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.19 gi|344211605|ref|YP_004795925.1| - 9.8e-08 32.5 0.0 1.8e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|344211605|ref|YP_004795925.1| - 0.001 19.1 0.8 0.77 9.9 0.1 3.6 2 1 2 4 4 4 1 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.6 gi|344211605|ref|YP_004795925.1| - 0.006 16.8 0.0 0.017 15.3 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.23 gi|344211605|ref|YP_004795925.1| - 0.05 13.5 0.1 0.21 11.5 0.1 2.3 1 0 0 1 1 1 0 Helix-hairpin-helix motif Aminotran_5 PF00266.19 gi|344211606|ref|YP_004795926.1| - 0.037 13.0 0.1 0.046 12.7 0.1 1.1 1 0 0 1 1 1 0 Aminotransferase class-V Acetyltransf_11 PF13720.6 gi|344211606|ref|YP_004795926.1| - 0.043 14.3 1.3 0.31 11.5 1.3 2.0 1 1 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 eIF3g PF12353.8 gi|344211606|ref|YP_004795926.1| - 0.08 13.3 0.6 5.4 7.4 0.0 2.2 2 0 0 2 2 2 0 Eukaryotic translation initiation factor 3 subunit G Response_reg PF00072.24 gi|344211609|ref|YP_004795929.1| - 1.9e-21 76.3 0.1 3.1e-21 75.7 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|344211609|ref|YP_004795929.1| - 3.7e-11 43.0 0.0 9.1e-11 41.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|344211609|ref|YP_004795929.1| - 2.4e-07 30.9 0.0 2e-06 28.0 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|344211609|ref|YP_004795929.1| - 1.1e-06 28.8 0.0 4.2e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.15 gi|344211609|ref|YP_004795929.1| - 3.1e-06 27.4 0.0 6.7e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.12 gi|344211609|ref|YP_004795929.1| - 1.9e-05 24.9 0.0 4.9e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344211609|ref|YP_004795929.1| - 7.2e-05 22.7 0.0 0.00022 21.2 0.0 1.9 2 0 0 2 2 2 1 PAS domain FleQ PF06490.11 gi|344211609|ref|YP_004795929.1| - 0.075 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ Rhomboid PF01694.22 gi|344211610|ref|YP_004795930.1| - 2.2e-26 92.7 15.3 2.2e-26 92.7 15.3 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|344211610|ref|YP_004795930.1| - 3.5e-12 46.3 6.9 4.9e-12 45.8 6.9 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|344211610|ref|YP_004795930.1| - 0.00026 21.5 1.3 0.00026 21.5 1.3 2.2 2 1 1 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Endonuclease_5 PF04493.14 gi|344211611|ref|YP_004795931.1| - 1.7e-54 184.5 0.0 2.2e-54 184.2 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|344211611|ref|YP_004795931.1| - 0.032 13.7 0.5 0.27 10.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF99 Acetyltransf_1 PF00583.25 gi|344211611|ref|YP_004795931.1| - 0.051 13.8 0.0 0.15 12.3 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family UvrC_HhH_N PF08459.11 gi|344211611|ref|YP_004795931.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.6 1 1 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal adh_short PF00106.25 gi|344211612|ref|YP_004795932.1| - 6.1e-50 169.4 0.0 7.5e-50 169.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344211612|ref|YP_004795932.1| - 2.2e-39 135.4 0.0 2.8e-39 135.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344211612|ref|YP_004795932.1| - 1.4e-10 41.4 0.0 2.5e-10 40.5 0.0 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344211612|ref|YP_004795932.1| - 5.7e-06 26.0 0.0 2.2e-05 24.0 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|344211612|ref|YP_004795932.1| - 0.0002 20.6 0.0 0.00038 19.6 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.10 gi|344211612|ref|YP_004795932.1| - 0.00028 20.4 0.0 0.00034 20.1 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Eno-Rase_NADH_b PF12242.8 gi|344211612|ref|YP_004795932.1| - 0.13 12.0 0.1 0.31 10.8 0.0 1.6 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ArsA_ATPase PF02374.15 gi|344211613|ref|YP_004795933.1| - 2.1e-78 263.6 0.0 5.3e-52 176.9 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|344211613|ref|YP_004795933.1| - 1.2e-07 31.8 0.0 2.9e-07 30.6 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|344211613|ref|YP_004795933.1| - 7.3e-07 29.3 0.0 5.7e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|344211613|ref|YP_004795933.1| - 8.6e-05 22.1 0.3 0.0094 15.4 0.0 2.9 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|344211613|ref|YP_004795933.1| - 0.024 14.1 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.16 gi|344211613|ref|YP_004795933.1| - 0.056 12.9 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|344211613|ref|YP_004795933.1| - 0.072 12.8 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.22 gi|344211613|ref|YP_004795933.1| - 0.11 12.2 0.4 1.1 8.8 0.3 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|344211613|ref|YP_004795933.1| - 0.12 12.0 1.6 0.19 11.3 0.2 2.1 2 1 0 2 2 2 0 AAA domain DZR PF12773.7 gi|344211614|ref|YP_004795934.1| - 0.0023 17.9 0.2 0.0036 17.3 0.2 1.3 1 1 0 1 1 1 1 Double zinc ribbon FYVE PF01363.21 gi|344211614|ref|YP_004795934.1| - 0.0033 17.5 0.2 0.0041 17.2 0.2 1.1 1 0 0 1 1 1 1 FYVE zinc finger zf-ribbon_3 PF13248.6 gi|344211614|ref|YP_004795934.1| - 0.0043 16.4 1.0 1.6 8.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-dskA_traR PF01258.17 gi|344211614|ref|YP_004795934.1| - 0.031 14.2 0.7 0.24 11.4 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_2 PF13240.6 gi|344211614|ref|YP_004795934.1| - 0.055 13.2 5.2 0.52 10.1 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|344211614|ref|YP_004795934.1| - 0.12 12.6 4.4 0.29 11.3 4.4 1.6 1 1 0 1 1 1 0 Zinc ribbon domain RecR PF02132.15 gi|344211614|ref|YP_004795934.1| - 0.12 11.9 2.2 0.25 10.9 2.2 1.5 1 1 0 1 1 1 0 RecR protein Helicase_C_2 PF13307.6 gi|344211615|ref|YP_004795935.1| - 1.9e-24 86.8 0.0 3.8e-24 85.8 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|344211615|ref|YP_004795935.1| - 1.1e-14 54.4 0.0 1e-11 44.8 0.0 2.1 2 0 0 2 2 2 2 DEAD_2 DEAD PF00270.29 gi|344211615|ref|YP_004795935.1| - 4.9e-08 32.9 0.0 0.0028 17.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|344211615|ref|YP_004795935.1| - 4.4e-07 30.0 0.0 0.0033 17.4 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|344211615|ref|YP_004795935.1| - 9.3e-06 25.2 0.3 0.00085 18.8 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|344211615|ref|YP_004795935.1| - 0.0019 17.9 0.6 0.09 12.5 0.1 2.6 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|344211615|ref|YP_004795935.1| - 0.0034 17.7 0.9 0.038 14.3 0.2 2.4 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|344211615|ref|YP_004795935.1| - 0.0036 17.6 1.2 3.3 8.0 0.0 3.0 2 1 0 3 3 3 2 AAA domain zf_Rg PF17915.1 gi|344211615|ref|YP_004795935.1| - 0.027 13.9 0.0 0.071 12.5 0.0 1.7 1 0 0 1 1 1 0 Reverse gyrase zinc finger UTP25 PF06862.12 gi|344211615|ref|YP_004795935.1| - 0.031 13.1 0.0 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 DUF2075 PF09848.9 gi|344211615|ref|YP_004795935.1| - 0.043 13.0 0.2 2 7.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|344211615|ref|YP_004795935.1| - 0.13 12.0 0.0 0.56 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain TBP PF00352.21 gi|344211616|ref|YP_004795936.1| - 1.8e-57 191.3 0.0 5.9e-28 96.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|344211616|ref|YP_004795936.1| - 6.1e-05 23.1 0.0 0.11 12.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|344211616|ref|YP_004795936.1| - 7.4e-05 23.0 0.0 0.014 15.7 0.0 2.3 1 1 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment PucR PF07905.11 gi|344211616|ref|YP_004795936.1| - 0.071 13.4 0.0 5.4 7.3 0.0 2.5 2 1 0 2 2 2 0 Purine catabolism regulatory protein-like family Ribosomal_S30AE PF02482.19 gi|344211616|ref|YP_004795936.1| - 0.15 12.8 0.0 24 5.8 0.0 2.2 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein TRAM PF01938.20 gi|344211617|ref|YP_004795937.1| - 1.3e-14 53.9 1.2 2.6e-14 52.9 1.2 1.6 1 0 0 1 1 1 1 TRAM domain CoA_transf_3 PF02515.17 gi|344211618|ref|YP_004795938.1| - 9.5e-125 416.5 0.0 1.1e-124 416.4 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.19 gi|344211619|ref|YP_004795939.1| - 3.7e-20 72.2 0.6 4.5e-20 71.9 0.6 1.1 1 0 0 1 1 1 1 B12 binding domain Flg_hook PF02120.16 gi|344211619|ref|YP_004795939.1| - 0.057 13.3 0.2 1.3 9.0 0.0 2.7 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK Peripla_BP_6 PF13458.6 gi|344211619|ref|YP_004795939.1| - 0.066 12.9 0.6 0.36 10.5 0.4 1.8 1 1 1 2 2 2 0 Periplasmic binding protein SNAPc_SNAP43 PF09808.9 gi|344211619|ref|YP_004795939.1| - 0.069 13.1 0.0 0.095 12.6 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 Met_asp_mut_E PF06368.11 gi|344211620|ref|YP_004795940.1| - 8.3e-205 680.4 0.0 9.4e-205 680.2 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.11 gi|344211621|ref|YP_004795941.1| - 2.4e-116 387.2 0.0 3.5e-116 386.7 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|344211621|ref|YP_004795941.1| - 3.7e-69 231.4 0.6 8.6e-69 230.2 0.6 1.6 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|344211621|ref|YP_004795941.1| - 5.6e-12 45.7 0.3 1.2e-11 44.6 0.3 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MaoC_dehydratas PF01575.19 gi|344211622|ref|YP_004795942.1| - 5.8e-05 22.6 0.0 0.0033 17.0 0.0 2.2 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344211622|ref|YP_004795942.1| - 0.00023 21.3 0.0 0.0036 17.5 0.0 2.3 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.6 gi|344211622|ref|YP_004795942.1| - 0.011 16.3 0.0 0.22 12.0 0.0 2.2 2 0 0 2 2 2 0 Thioesterase-like superfamily 4HBT PF03061.22 gi|344211622|ref|YP_004795942.1| - 0.12 12.7 0.5 0.92 9.9 0.0 2.5 2 1 0 2 2 2 0 Thioesterase superfamily HpcH_HpaI PF03328.14 gi|344211623|ref|YP_004795943.1| - 3.9e-16 58.9 0.1 1.5e-15 56.9 0.0 2.0 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.22 gi|344211623|ref|YP_004795943.1| - 1.8e-05 23.2 0.0 0.00025 19.5 0.0 2.2 2 1 0 2 2 2 1 Malate synthase C-C_Bond_Lyase PF15617.6 gi|344211623|ref|YP_004795943.1| - 0.00024 20.4 0.0 0.49 9.5 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Aminotran_1_2 PF00155.21 gi|344211624|ref|YP_004795944.1| - 3e-46 158.2 0.0 3.6e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|344211624|ref|YP_004795944.1| - 3.4e-08 32.8 0.0 9.1e-08 31.4 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|344211624|ref|YP_004795944.1| - 6.2e-05 22.4 0.0 9.1e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|344211624|ref|YP_004795944.1| - 0.00014 20.5 0.0 0.00019 20.1 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|344211624|ref|YP_004795944.1| - 0.002 17.0 0.0 0.0053 15.7 0.0 1.7 2 0 0 2 2 2 1 Allinase CinA PF02464.17 gi|344211626|ref|YP_004795946.1| - 1.5e-58 196.8 1.5 1.7e-58 196.6 1.5 1.0 1 0 0 1 1 1 1 Competence-damaged protein UPF0254 PF06787.11 gi|344211626|ref|YP_004795946.1| - 0.037 13.8 0.2 8.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) YdjM PF04307.14 gi|344211627|ref|YP_004795947.1| - 4e-13 49.0 4.0 4.6e-12 45.6 4.0 2.1 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|344211627|ref|YP_004795947.1| - 7.3e-06 26.1 0.2 1.1e-05 25.6 0.2 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.6 gi|344211628|ref|YP_004795948.1| - 3.9e-08 32.9 0.3 8.9e-08 31.8 0.3 1.6 1 0 0 1 1 1 1 PHP-associated Spt5-NGN PF03439.13 gi|344211630|ref|YP_004795950.1| - 2.3e-24 85.1 0.1 3.6e-24 84.5 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|344211630|ref|YP_004795950.1| - 1.3e-07 31.3 0.3 1.3e-07 31.3 0.3 2.4 3 0 0 3 3 3 1 KOW motif Glyco_hydro_65C PF03633.15 gi|344211630|ref|YP_004795950.1| - 0.1 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DbpA PF03880.15 gi|344211630|ref|YP_004795950.1| - 0.12 12.4 0.3 0.31 11.1 0.1 1.7 2 0 0 2 2 2 0 DbpA RNA binding domain SecE PF00584.20 gi|344211631|ref|YP_004795951.1| - 0.00011 22.0 0.2 0.00014 21.7 0.2 1.2 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex MCPsignal PF00015.21 gi|344211632|ref|YP_004795952.1| - 3.6e-41 140.9 25.6 3.6e-41 140.9 25.6 6.4 5 2 2 7 7 6 1 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|344211632|ref|YP_004795952.1| - 4.5e-11 43.0 0.7 4.5e-11 43.0 0.7 5.9 4 2 1 6 6 6 1 Cache domain HAMP PF00672.25 gi|344211632|ref|YP_004795952.1| - 2.2e-09 37.5 14.7 1.9e-06 28.2 0.1 5.9 5 1 0 5 5 4 2 HAMP domain EzrA PF06160.12 gi|344211632|ref|YP_004795952.1| - 7.2e-08 31.1 30.6 3.7e-05 22.1 9.0 4.1 3 1 1 4 4 4 2 Septation ring formation regulator, EzrA Laminin_II PF06009.12 gi|344211632|ref|YP_004795952.1| - 0.0002 21.4 42.9 0.027 14.5 0.4 5.3 2 2 3 5 5 5 3 Laminin Domain II DUF948 PF06103.11 gi|344211632|ref|YP_004795952.1| - 0.0066 16.7 50.8 0.36 11.1 4.0 8.0 2 1 4 7 7 7 4 Bacterial protein of unknown function (DUF948) DUF4559 PF15112.6 gi|344211632|ref|YP_004795952.1| - 0.02 14.6 21.4 0.039 13.6 6.9 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4559) DUF1664 PF07889.12 gi|344211632|ref|YP_004795952.1| - 0.033 14.2 41.7 0.3 11.1 3.7 6.3 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|344211632|ref|YP_004795952.1| - 0.055 13.8 38.5 1.5 9.2 2.5 5.8 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|344211632|ref|YP_004795952.1| - 0.1 13.0 33.5 2.4 8.7 3.4 6.2 3 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|344211632|ref|YP_004795952.1| - 0.14 12.3 30.3 0.29 11.3 6.7 4.7 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family Exonuc_VII_S PF02609.16 gi|344211632|ref|YP_004795952.1| - 0.16 12.1 7.9 3.4 7.8 0.0 4.2 4 0 0 4 4 3 0 Exonuclease VII small subunit IFT57 PF10498.9 gi|344211632|ref|YP_004795952.1| - 0.21 10.5 38.5 0.64 8.9 11.9 3.3 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 DUF2203 PF09969.9 gi|344211632|ref|YP_004795952.1| - 0.29 11.9 36.0 0.071 13.8 3.6 5.4 1 1 5 6 6 6 0 Uncharacterized conserved protein (DUF2203) Syntaxin_2 PF14523.6 gi|344211632|ref|YP_004795952.1| - 0.57 10.6 21.2 8.9 6.7 3.3 5.6 1 1 5 6 6 6 0 Syntaxin-like protein AIP3 PF03915.13 gi|344211632|ref|YP_004795952.1| - 0.58 9.2 37.2 2.2 7.3 11.0 3.2 1 1 2 3 3 3 0 Actin interacting protein 3 RPW8 PF05659.11 gi|344211632|ref|YP_004795952.1| - 0.63 9.7 16.5 33 4.2 0.3 6.3 3 2 3 6 6 6 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Dynamin_M PF01031.20 gi|344211632|ref|YP_004795952.1| - 0.65 9.2 13.6 2.4 7.3 2.6 2.8 2 1 0 2 2 2 0 Dynamin central region APG17 PF04108.12 gi|344211632|ref|YP_004795952.1| - 0.81 8.7 39.3 0.067 12.3 10.0 3.6 2 1 1 3 3 3 0 Autophagy protein Apg17 DUF2779 PF11074.8 gi|344211632|ref|YP_004795952.1| - 0.87 10.1 3.2 17 5.9 0.1 3.4 3 1 0 4 4 3 0 Domain of unknown function(DUF2779) Prominin PF05478.11 gi|344211632|ref|YP_004795952.1| - 1.2 7.1 24.0 0.032 12.2 11.5 2.8 1 1 2 3 3 3 0 Prominin Atg14 PF10186.9 gi|344211632|ref|YP_004795952.1| - 2.9 6.9 24.3 3.1 6.8 8.1 3.6 2 1 2 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 Mce4_CUP1 PF11887.8 gi|344211632|ref|YP_004795952.1| - 3.3 7.1 19.0 1 8.7 4.9 3.1 1 1 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Spc7 PF08317.11 gi|344211632|ref|YP_004795952.1| - 3.4 6.5 42.6 0.13 11.1 7.0 3.9 1 1 2 4 4 4 0 Spc7 kinetochore protein Peroxin-13_N PF04088.13 gi|344211632|ref|YP_004795952.1| - 3.5 7.9 5.8 0.72 10.1 0.4 2.7 2 1 0 2 2 2 0 Peroxin 13, N-terminal region CALCOCO1 PF07888.11 gi|344211632|ref|YP_004795952.1| - 3.8 6.3 40.3 1.3 7.8 8.5 3.6 1 1 3 4 4 4 0 Calcium binding and coiled-coil domain (CALCOCO1) like COG2 PF06148.11 gi|344211632|ref|YP_004795952.1| - 4.4 7.4 32.5 0.48 10.5 0.3 6.2 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Dna2 PF08696.11 gi|344211632|ref|YP_004795952.1| - 5 6.9 14.1 1.4 8.7 4.1 3.3 2 1 1 3 3 3 0 DNA replication factor Dna2 TMPIT PF07851.13 gi|344211632|ref|YP_004795952.1| - 5.1 6.2 28.5 0.11 11.7 4.0 4.4 2 2 3 5 5 5 0 TMPIT-like protein VAPB_antitox PF02697.14 gi|344211632|ref|YP_004795952.1| - 5.7 7.8 7.9 2.6 8.9 0.1 3.9 2 1 1 3 3 3 0 Putative antitoxin Serine_rich PF08824.10 gi|344211632|ref|YP_004795952.1| - 6 6.9 16.8 0.29 11.1 1.2 3.5 1 1 2 4 4 4 0 Serine rich protein interaction domain KxDL PF10241.9 gi|344211632|ref|YP_004795952.1| - 6.4 7.1 8.9 16 5.9 1.0 4.0 2 2 1 3 3 3 0 Uncharacterized conserved protein Mod_r PF07200.13 gi|344211632|ref|YP_004795952.1| - 6.6 6.8 37.5 1.2 9.3 1.0 5.4 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Peripla_BP_6 PF13458.6 gi|344211633|ref|YP_004795953.1| - 2.5e-28 99.8 10.9 3.3e-28 99.4 10.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|344211633|ref|YP_004795953.1| - 4.2e-19 68.9 0.0 7.4e-19 68.1 0.0 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|344211633|ref|YP_004795953.1| - 0.0061 15.6 0.1 0.13 11.3 0.1 2.1 2 0 0 2 2 2 1 Periplasmic binding protein domain DUF4649 PF15507.6 gi|344211633|ref|YP_004795953.1| - 0.073 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4649) Tubulin PF00091.25 gi|344211634|ref|YP_004795954.1| - 1.2e-40 139.8 0.3 2.1e-40 139.0 0.3 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|344211634|ref|YP_004795954.1| - 1.3e-33 115.2 1.9 3.5e-33 113.8 0.5 2.5 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|344211634|ref|YP_004795954.1| - 0.0088 16.0 1.8 0.019 14.8 0.2 2.1 2 0 0 2 2 2 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|344211634|ref|YP_004795954.1| - 0.16 11.1 8.3 0.17 11.0 1.3 2.4 1 1 0 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|344211635|ref|YP_004795955.1| - 1.8e-63 213.7 0.0 3e-63 213.1 0.0 1.3 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Na_Ca_ex PF01699.24 gi|344211636|ref|YP_004795956.1| - 6.4e-16 58.7 21.2 4.2e-09 36.5 3.5 2.8 2 1 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.11 gi|344211637|ref|YP_004795957.1| - 6.1e-26 90.5 0.0 1.7e-25 89.1 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|344211637|ref|YP_004795957.1| - 1.2e-11 44.1 0.2 2.7e-11 43.0 0.2 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|344211637|ref|YP_004795957.1| - 1.3e-10 41.5 0.0 2.1e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|344211637|ref|YP_004795957.1| - 0.00012 22.3 0.0 0.0015 18.7 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|344211637|ref|YP_004795957.1| - 0.00027 20.5 0.1 0.00053 19.6 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain adh_short PF00106.25 gi|344211637|ref|YP_004795957.1| - 0.00085 18.8 0.6 0.0027 17.2 0.6 1.8 1 1 0 1 1 1 1 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|344211637|ref|YP_004795957.1| - 0.00093 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|344211637|ref|YP_004795957.1| - 0.0011 18.2 3.3 0.0018 17.4 3.3 1.3 1 0 0 1 1 1 1 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344211637|ref|YP_004795957.1| - 0.0022 18.3 0.9 0.01 16.1 0.9 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GIDA PF01134.22 gi|344211637|ref|YP_004795957.1| - 0.012 14.7 0.5 0.016 14.3 0.5 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|344211637|ref|YP_004795957.1| - 0.018 14.3 0.2 0.026 13.7 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|344211637|ref|YP_004795957.1| - 0.024 13.9 0.2 0.041 13.1 0.2 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|344211637|ref|YP_004795957.1| - 0.089 12.7 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HHH_5 PF14520.6 gi|344211638|ref|YP_004795958.1| - 5.4e-08 33.3 0.3 7.8e-08 32.8 0.3 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|344211638|ref|YP_004795958.1| - 0.00011 22.4 0.0 0.0011 19.2 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) Cdd1 PF11731.8 gi|344211638|ref|YP_004795958.1| - 0.00088 19.5 0.0 0.0013 18.9 0.0 1.2 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|344211638|ref|YP_004795958.1| - 0.0086 16.3 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.9 gi|344211638|ref|YP_004795958.1| - 0.067 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HNF-1_N PF04814.13 gi|344211638|ref|YP_004795958.1| - 2.7 8.6 8.8 65 4.0 11.2 1.8 2 0 0 2 2 2 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus Apt1 PF10351.9 gi|344211638|ref|YP_004795958.1| - 3.8 6.3 6.4 3.7 6.3 6.4 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Hid1 PF12722.7 gi|344211638|ref|YP_004795958.1| - 5.7 4.9 10.4 6.5 4.7 10.4 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Presenilin PF01080.17 gi|344211638|ref|YP_004795958.1| - 6 5.5 8.4 7.1 5.3 8.4 1.1 1 0 0 1 1 1 0 Presenilin Chorismate_bind PF00425.18 gi|344211639|ref|YP_004795959.1| - 1e-101 339.8 0.0 1.7e-101 339.2 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|344211639|ref|YP_004795959.1| - 1.4e-07 31.9 0.0 4.3e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|344211640|ref|YP_004795960.1| - 3.1e-40 138.0 0.0 2.1e-38 132.0 0.0 2.1 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344211640|ref|YP_004795960.1| - 0.00054 19.8 0.9 0.0039 17.0 0.9 2.2 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.19 gi|344211641|ref|YP_004795961.1| - 6.5e-45 153.7 0.0 7.7e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV Alpha-amylase PF00128.24 gi|344211642|ref|YP_004795962.1| - 2.1e-19 70.3 1.6 3.9e-19 69.4 1.6 1.6 1 1 0 1 1 1 1 Alpha amylase, catalytic domain DUF1939 PF09154.10 gi|344211642|ref|YP_004795962.1| - 2e-11 43.8 4.1 3.7e-11 43.0 2.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) TAT_signal PF10518.9 gi|344211642|ref|YP_004795962.1| - 0.024 14.5 2.4 0.024 14.5 2.4 1.6 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aminotran_5 PF00266.19 gi|344211642|ref|YP_004795962.1| - 0.13 11.2 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-V Sacchrp_dh_NADP PF03435.18 gi|344211643|ref|YP_004795963.1| - 1.6e-11 44.6 0.0 2.6e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|344211643|ref|YP_004795963.1| - 0.0024 17.4 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Bacteriocin_IId PF09221.10 gi|344211643|ref|YP_004795963.1| - 0.012 15.8 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like NAD_binding_10 PF13460.6 gi|344211643|ref|YP_004795963.1| - 0.013 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H-binding Rieske PF00355.26 gi|344211644|ref|YP_004795964.1| - 8.3e-08 32.1 0.0 1.1e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Zn_Tnp_IS91 PF14319.6 gi|344211645|ref|YP_004795965.1| - 0.039 14.0 0.3 0.054 13.5 0.3 1.3 1 1 0 1 1 1 0 Transposase zinc-binding domain MCM_OB PF17207.3 gi|344211645|ref|YP_004795965.1| - 0.051 13.4 2.0 0.28 11.0 1.5 1.8 1 1 1 2 2 2 0 MCM OB domain HTH_20 PF12840.7 gi|344211645|ref|YP_004795965.1| - 0.11 12.6 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain OrfB_Zn_ribbon PF07282.11 gi|344211645|ref|YP_004795965.1| - 0.47 10.4 3.2 0.94 9.4 3.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain FYDLN_acid PF09538.10 gi|344211645|ref|YP_004795965.1| - 0.82 10.4 6.4 0.16 12.6 2.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Usp PF00582.26 gi|344211646|ref|YP_004795966.1| - 4e-65 218.6 8.8 7.7e-34 117.2 0.8 2.0 2 0 0 2 2 2 2 Universal stress protein family Lactamase_B_4 PF13691.6 gi|344211646|ref|YP_004795966.1| - 0.036 13.7 0.0 9.3 6.0 0.0 2.4 2 0 0 2 2 2 0 tRNase Z endonuclease PTS_IIB PF02302.17 gi|344211646|ref|YP_004795966.1| - 0.068 13.9 0.2 1.8 9.3 0.0 2.4 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit FAD_binding_6 PF00970.24 gi|344211647|ref|YP_004795967.1| - 7.8e-13 48.6 0.0 1e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.19 gi|344211648|ref|YP_004795968.1| - 2.7e-61 207.3 0.6 4e-61 206.7 0.6 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|344211648|ref|YP_004795968.1| - 4.4e-39 134.4 0.1 1.2e-38 133.0 0.1 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|344211648|ref|YP_004795968.1| - 2.9e-06 27.0 0.2 5.7e-06 26.0 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|344211648|ref|YP_004795968.1| - 0.0038 17.5 0.0 0.0091 16.3 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|344211649|ref|YP_004795969.1| - 4.3e-32 111.0 0.3 6.4e-32 110.4 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|344211649|ref|YP_004795969.1| - 6e-20 71.2 0.2 1.6e-19 69.8 0.2 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Methyltransf_11 PF08241.12 gi|344211650|ref|YP_004795970.1| - 9.9e-20 71.0 0.0 1.6e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344211650|ref|YP_004795970.1| - 3.1e-18 66.3 0.0 5.4e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344211650|ref|YP_004795970.1| - 2.1e-14 53.6 0.0 2.8e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344211650|ref|YP_004795970.1| - 3.6e-11 42.8 0.0 4.6e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|344211650|ref|YP_004795970.1| - 1.2e-10 41.5 0.0 2.7e-10 40.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211650|ref|YP_004795970.1| - 3.4e-10 40.5 0.0 6e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344211650|ref|YP_004795970.1| - 2e-05 24.5 0.0 3.2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|344211650|ref|YP_004795970.1| - 0.0072 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|344211650|ref|YP_004795970.1| - 0.012 15.5 0.0 0.019 14.8 0.0 1.4 1 1 0 1 1 1 0 Hypothetical methyltransferase FtsJ PF01728.19 gi|344211650|ref|YP_004795970.1| - 0.021 14.9 0.0 0.048 13.8 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase FAD_binding_7 PF03441.14 gi|344211651|ref|YP_004795971.1| - 1e-68 230.8 0.5 1.4e-68 230.4 0.5 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|344211651|ref|YP_004795971.1| - 1.5e-29 103.2 0.5 2.3e-29 102.5 0.5 1.3 1 0 0 1 1 1 1 DNA photolyase YdjM PF04307.14 gi|344211652|ref|YP_004795972.1| - 2.9e-08 33.2 7.2 6.2e-08 32.1 7.2 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4131 PF13567.6 gi|344211653|ref|YP_004795973.1| - 0.0071 16.0 1.8 0.016 14.8 0.1 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4131) DAO PF01266.24 gi|344211655|ref|YP_004795975.1| - 1.1e-11 44.9 0.0 7.1e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|344211655|ref|YP_004795975.1| - 7.7e-08 31.8 0.0 1.5e-07 30.8 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|344211655|ref|YP_004795975.1| - 8.6e-08 31.4 0.0 0.00028 19.9 0.0 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|344211655|ref|YP_004795975.1| - 9.3e-07 28.4 0.2 3.7e-06 26.4 0.0 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344211655|ref|YP_004795975.1| - 2.7e-06 27.0 0.4 1.8e-05 24.3 0.4 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344211655|ref|YP_004795975.1| - 1.1e-05 24.4 0.0 0.0005 18.9 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|344211655|ref|YP_004795975.1| - 1.8e-05 24.1 0.0 0.00011 21.4 0.0 1.9 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|344211655|ref|YP_004795975.1| - 6e-05 22.4 0.2 0.0038 16.5 0.2 2.8 1 1 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|344211655|ref|YP_004795975.1| - 8.3e-05 21.8 0.0 0.00078 18.6 0.0 2.0 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|344211655|ref|YP_004795975.1| - 0.00013 21.3 0.0 0.00084 18.6 0.0 2.1 2 1 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|344211655|ref|YP_004795975.1| - 0.00063 19.9 0.0 0.0016 18.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|344211655|ref|YP_004795975.1| - 0.0048 16.2 0.0 0.0079 15.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|344211655|ref|YP_004795975.1| - 0.13 12.5 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_kinase PF01513.21 gi|344211656|ref|YP_004795976.1| - 1.7e-08 34.0 1.4 2.7e-08 33.4 1.3 1.5 1 1 0 1 1 1 1 ATP-NAD kinase Peripla_BP_1 PF00532.21 gi|344211656|ref|YP_004795976.1| - 0.13 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Cytochrom_B_C PF00032.17 gi|344211660|ref|YP_004795980.1| - 1e-08 35.4 1.2 2e-08 34.4 0.2 1.9 2 1 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD Rhomboid PF01694.22 gi|344211660|ref|YP_004795980.1| - 0.069 13.2 1.5 0.13 12.2 1.5 1.4 1 0 0 1 1 1 0 Rhomboid family Cytochrome_B PF00033.19 gi|344211661|ref|YP_004795981.1| - 1.6e-44 152.0 17.3 2.2e-44 151.5 17.3 1.2 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|344211661|ref|YP_004795981.1| - 1.1e-40 139.4 13.1 2.2e-40 138.4 11.4 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|344211661|ref|YP_004795981.1| - 0.00056 20.4 1.8 0.00056 20.4 1.8 3.1 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) DUF373 PF04123.13 gi|344211661|ref|YP_004795981.1| - 0.018 14.5 6.6 0.046 13.2 6.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Rieske PF00355.26 gi|344211662|ref|YP_004795982.1| - 0.00024 21.0 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain AGTRAP PF06396.11 gi|344211663|ref|YP_004795983.1| - 0.16 11.8 0.6 0.25 11.1 0.5 1.4 1 1 0 1 1 1 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Copper-bind PF00127.20 gi|344211664|ref|YP_004795984.1| - 1.5e-13 51.0 0.1 3.6e-13 49.8 0.1 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|344211664|ref|YP_004795984.1| - 0.22 11.4 12.4 0.13 12.2 9.1 2.4 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5337 PF17272.2 gi|344211666|ref|YP_004795986.1| - 0.072 12.9 1.3 0.25 11.2 0.1 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5337) DUF202 PF02656.15 gi|344211666|ref|YP_004795986.1| - 0.12 12.9 2.6 0.15 12.5 0.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Usp PF00582.26 gi|344211667|ref|YP_004795987.1| - 1.1e-35 123.2 0.6 1.8e-35 122.5 0.6 1.3 1 1 0 1 1 1 1 Universal stress protein family HhH-GPD PF00730.25 gi|344211668|ref|YP_004795988.1| - 2.3e-20 73.1 0.0 3e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|344211668|ref|YP_004795988.1| - 8.6e-10 38.0 0.1 3.3e-08 33.0 0.0 3.1 2 1 1 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|344211668|ref|YP_004795988.1| - 0.0031 18.1 0.1 0.17 12.6 0.0 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain DUF3349 PF11829.8 gi|344211668|ref|YP_004795988.1| - 0.044 14.6 0.0 0.09 13.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) IMS_HHH PF11798.8 gi|344211668|ref|YP_004795988.1| - 0.066 13.6 0.0 0.21 12.0 0.0 1.9 2 0 0 2 2 2 0 IMS family HHH motif EndIII_4Fe-2S PF10576.9 gi|344211668|ref|YP_004795988.1| - 0.069 13.5 2.8 0.12 12.7 2.8 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III LPD29 PF18847.1 gi|344211668|ref|YP_004795988.1| - 0.13 13.2 0.0 0.2 12.6 0.0 1.2 1 0 0 1 1 1 0 Large polyvalent protein associated domain 29 Acetyltransf_3 PF13302.7 gi|344211669|ref|YP_004795989.1| - 3e-23 83.0 0.0 3.7e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344211669|ref|YP_004795989.1| - 2.8e-12 46.9 0.0 3.5e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|344211669|ref|YP_004795989.1| - 9.8e-09 35.0 0.0 2.9e-08 33.5 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344211669|ref|YP_004795989.1| - 4.6e-07 30.1 0.0 9.1e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211669|ref|YP_004795989.1| - 0.1 13.0 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211669|ref|YP_004795989.1| - 0.16 12.0 0.0 0.59 10.1 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_3 PF13302.7 gi|344211670|ref|YP_004795990.1| - 3.8e-31 108.6 0.0 4.7e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344211670|ref|YP_004795990.1| - 1e-11 45.2 0.0 1.2e-11 45.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344211670|ref|YP_004795990.1| - 1.5e-11 44.6 0.0 2.1e-11 44.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.6 gi|344211670|ref|YP_004795990.1| - 7.9e-09 35.3 0.1 7.1e-08 32.3 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211670|ref|YP_004795990.1| - 0.013 15.4 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein AhpC-TSA PF00578.21 gi|344211671|ref|YP_004795991.1| - 3.9e-16 59.1 0.0 4.5e-16 58.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344211671|ref|YP_004795991.1| - 6.7e-07 29.1 0.0 7.8e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Redoxin PRC PF05239.16 gi|344211672|ref|YP_004795992.1| - 1.1e-10 41.4 1.0 1.4e-10 41.1 1.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|344211672|ref|YP_004795992.1| - 0.028 14.7 0.4 0.091 13.0 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) TrkA_N PF02254.18 gi|344211673|ref|YP_004795993.1| - 1.1e-20 74.0 1.8 3.1e-20 72.6 1.8 1.8 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.20 gi|344211673|ref|YP_004795993.1| - 6.6e-11 42.3 2.7 3.1e-10 40.2 0.9 2.4 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|344211673|ref|YP_004795993.1| - 1.8e-07 31.6 0.5 9.5e-07 29.3 0.1 2.4 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DHHA1 PF02272.19 gi|344211673|ref|YP_004795993.1| - 8.1e-07 29.5 0.1 5.4e-06 26.9 0.0 2.3 2 0 0 2 2 2 1 DHHA1 domain Sacchrp_dh_NADP PF03435.18 gi|344211673|ref|YP_004795993.1| - 1.3e-06 28.7 1.0 1.1e-05 25.8 0.3 2.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|344211673|ref|YP_004795993.1| - 2.8e-06 27.1 0.1 8.9e-06 25.4 0.0 1.9 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|344211673|ref|YP_004795993.1| - 3.7e-05 23.4 0.3 8.9e-05 22.1 0.3 1.6 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|344211673|ref|YP_004795993.1| - 9.4e-05 22.6 0.0 0.00017 21.8 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|344211673|ref|YP_004795993.1| - 0.00034 21.0 2.3 0.00075 19.9 1.6 2.0 1 1 1 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|344211673|ref|YP_004795993.1| - 0.00089 18.9 0.1 0.0021 17.7 0.1 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|344211673|ref|YP_004795993.1| - 0.0019 17.7 1.1 0.013 15.0 0.2 2.3 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family adh_short PF00106.25 gi|344211673|ref|YP_004795993.1| - 0.002 17.6 1.6 0.0035 16.8 0.4 2.0 2 1 0 2 2 2 1 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|344211673|ref|YP_004795993.1| - 0.0026 17.8 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|344211673|ref|YP_004795993.1| - 0.0034 17.3 0.1 0.0093 15.9 0.1 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|344211673|ref|YP_004795993.1| - 0.0094 16.0 0.1 0.02 14.9 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase adh_short_C2 PF13561.6 gi|344211673|ref|YP_004795993.1| - 0.016 14.8 3.8 0.061 12.9 1.1 2.6 2 1 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344211673|ref|YP_004795993.1| - 0.018 15.0 0.6 0.047 13.6 0.1 2.0 2 0 0 2 2 2 0 KR domain 2-Hacid_dh_C PF02826.19 gi|344211673|ref|YP_004795993.1| - 0.047 13.0 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|344211673|ref|YP_004795993.1| - 0.077 13.5 0.3 0.31 11.5 0.1 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain Ldh_1_N PF00056.23 gi|344211673|ref|YP_004795993.1| - 0.17 11.9 1.5 0.32 11.1 0.5 1.9 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain Virul_fac_BrkB PF03631.15 gi|344211674|ref|YP_004795994.1| - 1.2e-25 90.7 33.7 1.3e-25 90.5 33.7 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF1180 PF06679.12 gi|344211674|ref|YP_004795994.1| - 2.1 8.7 4.0 5.7 7.3 4.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) Acetyltransf_10 PF13673.7 gi|344211675|ref|YP_004795995.1| - 6.4e-24 84.3 0.0 7.4e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344211675|ref|YP_004795995.1| - 4.6e-12 46.2 0.0 5.5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344211675|ref|YP_004795995.1| - 2.6e-09 37.4 0.0 3.3e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344211675|ref|YP_004795995.1| - 2.1e-06 27.9 0.1 3.8e-06 27.0 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344211675|ref|YP_004795995.1| - 9.4e-05 22.5 0.2 0.00043 20.4 0.0 2.0 1 1 1 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_5 PF13444.6 gi|344211675|ref|YP_004795995.1| - 0.0012 19.5 0.1 0.0042 17.8 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211675|ref|YP_004795995.1| - 0.0038 17.2 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Paramyxo_PNT PF14320.6 gi|344211675|ref|YP_004795995.1| - 0.009 15.2 0.0 0.011 14.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoprotein P region PNT disordered PanZ PF12568.8 gi|344211675|ref|YP_004795995.1| - 0.13 11.9 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ zf-C2H2_6 PF13912.6 gi|344211677|ref|YP_004795997.1| - 0.027 14.5 1.3 0.041 13.9 1.3 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|344211677|ref|YP_004795997.1| - 0.05 13.7 2.8 0.062 13.4 2.8 1.2 1 0 0 1 1 1 0 Zinc ribbon domain IMPDH PF00478.25 gi|344211678|ref|YP_004795998.1| - 3e-142 473.7 9.9 3.4e-142 473.5 9.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|344211678|ref|YP_004795998.1| - 2e-25 89.0 4.8 1.4e-12 47.8 0.5 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|344211678|ref|YP_004795998.1| - 2.5e-12 46.8 8.6 2.5e-06 27.1 4.2 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|344211678|ref|YP_004795998.1| - 2.1e-08 33.6 5.1 2.1e-08 33.6 5.1 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|344211678|ref|YP_004795998.1| - 8.3e-05 21.9 5.1 8.3e-05 21.9 5.1 1.8 2 0 0 2 2 2 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|344211678|ref|YP_004795998.1| - 0.0001 21.7 1.4 0.0001 21.7 1.4 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|344211678|ref|YP_004795998.1| - 0.00013 21.3 2.1 0.00016 21.0 1.0 1.7 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|344211678|ref|YP_004795998.1| - 0.00048 19.7 3.7 0.00063 19.3 0.1 2.3 2 1 0 3 3 3 1 Histidine biosynthesis protein Dus PF01207.17 gi|344211678|ref|YP_004795998.1| - 0.0024 17.1 0.2 0.0024 17.1 0.2 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|344211678|ref|YP_004795998.1| - 0.045 13.2 1.2 0.084 12.3 0.2 1.9 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Zn-ribbon_8 PF09723.10 gi|344211680|ref|YP_004796000.1| - 0.01 16.0 2.8 0.24 11.6 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain DZR PF12773.7 gi|344211680|ref|YP_004796000.1| - 0.022 14.8 0.2 0.029 14.4 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|344211680|ref|YP_004796000.1| - 0.1 12.0 2.4 0.37 10.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Pro_CA PF00484.19 gi|344211681|ref|YP_004796001.1| - 1.9e-28 99.7 0.0 2.6e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase DUF3164 PF11363.8 gi|344211681|ref|YP_004796001.1| - 0.19 11.3 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3164) CM_2 PF01817.21 gi|344211682|ref|YP_004796002.1| - 2.8e-14 53.2 4.1 3.2e-14 53.0 4.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF4025 PF13217.6 gi|344211682|ref|YP_004796002.1| - 0.017 15.0 1.1 0.03 14.2 1.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4025) DUF853 PF05872.12 gi|344211682|ref|YP_004796002.1| - 0.048 12.3 0.2 0.054 12.1 0.2 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) GHMP_kinases_N PF00288.26 gi|344211683|ref|YP_004796003.1| - 8.2e-12 45.2 3.1 1.1e-11 44.8 1.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF3955 PF13127.6 gi|344211684|ref|YP_004796004.1| - 0.15 11.9 0.6 0.15 11.9 0.6 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3955) TMEM237 PF15383.6 gi|344211684|ref|YP_004796004.1| - 0.88 8.6 2.0 1.3 8.0 2.0 1.3 1 0 0 1 1 1 0 Transmembrane protein 237 Phage_holin_3_6 PF07332.11 gi|344211685|ref|YP_004796005.1| - 0.055 13.5 2.4 0.051 13.6 2.4 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III TrkA_N PF02254.18 gi|344211686|ref|YP_004796006.1| - 1.2e-29 103.0 0.9 2.3e-29 102.0 0.9 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|344211686|ref|YP_004796006.1| - 1.2e-17 63.5 0.3 1.7e-15 56.6 0.0 2.8 3 0 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.17 gi|344211686|ref|YP_004796006.1| - 7.9e-06 26.4 0.1 2.5e-05 24.8 0.1 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.6 gi|344211686|ref|YP_004796006.1| - 0.00018 21.4 0.5 0.00031 20.7 0.5 1.6 1 1 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|344211686|ref|YP_004796006.1| - 0.00049 20.3 0.1 0.00074 19.8 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|344211686|ref|YP_004796006.1| - 0.00068 19.6 0.1 0.00095 19.1 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_3 PF13377.6 gi|344211686|ref|YP_004796006.1| - 0.0029 17.9 0.1 0.0042 17.4 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain ADH_zinc_N PF00107.26 gi|344211686|ref|YP_004796006.1| - 0.0037 17.2 0.0 0.046 13.7 0.0 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase XdhC_C PF13478.6 gi|344211686|ref|YP_004796006.1| - 0.0037 17.8 0.1 0.0072 16.8 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|344211686|ref|YP_004796006.1| - 0.006 16.2 0.4 0.16 11.6 0.0 2.3 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|344211686|ref|YP_004796006.1| - 0.0068 16.8 0.2 0.012 16.0 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NmrA PF05368.13 gi|344211686|ref|YP_004796006.1| - 0.011 15.3 0.1 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 NmrA-like family Pyr_redox PF00070.27 gi|344211686|ref|YP_004796006.1| - 0.011 16.3 0.2 0.095 13.3 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344211686|ref|YP_004796006.1| - 0.015 14.9 0.0 0.022 14.4 0.0 1.4 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|344211686|ref|YP_004796006.1| - 0.017 14.5 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|344211686|ref|YP_004796006.1| - 0.022 15.6 0.6 0.05 14.4 0.6 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.15 gi|344211686|ref|YP_004796006.1| - 0.048 13.8 0.0 0.072 13.3 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|344211686|ref|YP_004796006.1| - 0.073 13.1 0.0 0.11 12.5 0.0 1.4 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|344211686|ref|YP_004796006.1| - 0.19 12.4 0.7 0.57 10.9 0.3 2.1 2 1 0 2 2 2 0 PglD N-terminal domain TrkH PF02386.16 gi|344211687|ref|YP_004796007.1| - 2.5e-115 385.8 11.4 3.1e-115 385.5 11.4 1.0 1 0 0 1 1 1 1 Cation transport protein TrkH PF02386.16 gi|344211689|ref|YP_004796009.1| - 4.2e-67 226.7 11.8 2.1e-65 221.1 11.8 2.0 1 1 0 1 1 1 1 Cation transport protein TrbC PF04956.13 gi|344211689|ref|YP_004796009.1| - 0.88 9.8 10.8 0.8 10.0 2.2 4.0 2 1 0 2 2 2 0 TrbC/VIRB2 family Usp PF00582.26 gi|344211690|ref|YP_004796010.1| - 1.5e-08 35.2 0.8 2.3e-08 34.7 0.8 1.3 1 1 0 1 1 1 1 Universal stress protein family Cohesin PF00963.18 gi|344211692|ref|YP_004796012.1| - 0.014 15.6 2.0 0.022 15.0 0.8 1.8 1 1 1 2 2 2 0 Cohesin domain DUF839 PF05787.13 gi|344211693|ref|YP_004796013.1| - 8.8e-17 61.4 12.4 6.7e-14 51.9 9.6 3.6 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) Dockerin_1 PF00404.18 gi|344211693|ref|YP_004796013.1| - 0.0026 17.9 4.8 0.0045 17.2 1.7 2.6 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|344211693|ref|YP_004796013.1| - 0.0059 16.4 2.0 2.6 8.2 0.0 3.1 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.32 gi|344211693|ref|YP_004796013.1| - 0.01 15.3 4.5 2.1 8.1 0.1 3.4 3 0 0 3 3 3 0 EF hand EF-hand_7 PF13499.6 gi|344211693|ref|YP_004796013.1| - 0.023 15.2 1.2 0.082 13.4 0.7 2.3 2 0 0 2 2 2 0 EF-hand domain pair Endotoxin_mid PF09131.10 gi|344211693|ref|YP_004796013.1| - 0.09 12.4 0.5 0.21 11.3 0.5 1.5 1 0 0 1 1 1 0 Bacillus thuringiensis delta-Endotoxin, middle domain PadR PF03551.14 gi|344211695|ref|YP_004796015.1| - 1.2e-07 31.5 0.1 1.6e-07 31.1 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|344211695|ref|YP_004796015.1| - 0.046 12.1 0.0 0.047 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4364 PF14277.6 gi|344211695|ref|YP_004796015.1| - 0.16 11.7 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) VirB3 PF05101.13 gi|344211696|ref|YP_004796016.1| - 0.14 12.4 0.9 0.17 12.1 0.9 1.3 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Acyl-CoA_dh_1 PF00441.24 gi|344211697|ref|YP_004796017.1| - 7.9e-50 169.0 1.2 1.1e-49 168.5 1.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344211697|ref|YP_004796017.1| - 1.3e-37 128.9 1.2 3.7e-37 127.4 0.2 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|344211697|ref|YP_004796017.1| - 7.4e-27 94.2 1.8 1.2e-26 93.6 1.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344211697|ref|YP_004796017.1| - 2.5e-22 78.9 0.0 4.5e-22 78.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF3829 PF12889.7 gi|344211697|ref|YP_004796017.1| - 0.053 13.0 0.6 0.079 12.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) 3HCDH_N PF02737.18 gi|344211698|ref|YP_004796018.1| - 3.3e-63 212.8 3.8 4.1e-63 212.5 3.8 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|344211698|ref|YP_004796018.1| - 2.9e-32 111.1 0.6 5e-31 107.2 0.0 2.6 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|344211698|ref|YP_004796018.1| - 3e-05 24.2 5.8 0.00027 21.2 5.8 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HisG PF01634.18 gi|344211698|ref|YP_004796018.1| - 0.0017 18.3 2.1 0.0033 17.4 2.1 1.4 1 0 0 1 1 1 1 ATP phosphoribosyltransferase F420_oxidored PF03807.17 gi|344211698|ref|YP_004796018.1| - 0.0051 17.4 1.5 0.02 15.4 1.5 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|344211698|ref|YP_004796018.1| - 0.012 15.0 1.2 0.021 14.2 1.2 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|344211698|ref|YP_004796018.1| - 0.022 14.3 0.6 0.032 13.8 0.6 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|344211698|ref|YP_004796018.1| - 0.027 14.1 0.1 0.038 13.6 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|344211698|ref|YP_004796018.1| - 0.033 14.2 1.0 0.07 13.1 1.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus adh_short PF00106.25 gi|344211698|ref|YP_004796018.1| - 0.039 13.4 1.1 0.056 12.9 1.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344211698|ref|YP_004796018.1| - 0.057 13.0 1.9 0.084 12.4 1.9 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase FBPase PF00316.20 gi|344211699|ref|YP_004796019.1| - 2.7e-28 98.7 0.1 4.6e-28 98.0 0.1 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PKD PF00801.20 gi|344211700|ref|YP_004796020.1| - 2.6e-09 36.8 2.5 2.6e-09 36.8 2.5 3.9 3 1 0 3 3 3 1 PKD domain Big_3_3 PF13750.6 gi|344211700|ref|YP_004796020.1| - 0.013 15.2 3.7 0.08 12.6 0.0 3.4 3 1 0 3 3 3 0 Bacterial Ig-like domain (group 3) DUF1616 PF07760.11 gi|344211700|ref|YP_004796020.1| - 0.036 13.4 2.5 0.75 9.1 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) DUF5011 PF16403.5 gi|344211700|ref|YP_004796020.1| - 0.26 11.4 2.5 1.1 9.4 0.2 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5011) DUF3987 PF13148.6 gi|344211700|ref|YP_004796020.1| - 0.95 8.4 2.9 1.4 7.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) DUF3099 PF11298.8 gi|344211701|ref|YP_004796021.1| - 6.9 6.9 7.8 0.95 9.6 2.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3099) ELFV_dehydrog PF00208.21 gi|344211702|ref|YP_004796022.1| - 1.3e-73 247.7 1.2 1.6e-73 247.4 1.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|344211702|ref|YP_004796022.1| - 1.2e-55 186.9 0.0 2e-55 186.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|344211702|ref|YP_004796022.1| - 0.0003 20.2 0.0 0.00058 19.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|344211702|ref|YP_004796022.1| - 0.065 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|344211702|ref|YP_004796022.1| - 0.098 11.9 0.4 0.16 11.3 0.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF4817 PF16087.5 gi|344211702|ref|YP_004796022.1| - 0.1 12.5 0.0 1.7 8.5 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) DUF4251 PF14059.6 gi|344211702|ref|YP_004796022.1| - 0.16 11.9 0.3 11 5.9 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4251) Polyketide_cyc PF03364.20 gi|344211703|ref|YP_004796023.1| - 2.4e-07 31.0 0.0 3.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport EamA PF00892.20 gi|344211704|ref|YP_004796024.1| - 4.2e-28 98.2 30.9 1.1e-15 58.0 8.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|344211704|ref|YP_004796024.1| - 0.22 10.8 9.4 0.24 10.7 2.2 2.4 2 1 0 2 2 2 0 Triose-phosphate Transporter family SLC35F PF06027.12 gi|344211704|ref|YP_004796024.1| - 1.3 8.5 6.6 0.12 11.8 0.8 1.9 2 1 1 3 3 3 0 Solute carrier family 35 RIO1 PF01163.22 gi|344211705|ref|YP_004796025.1| - 1.1e-09 38.1 0.0 1.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|344211705|ref|YP_004796025.1| - 2.1e-05 24.0 0.0 3.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|344211705|ref|YP_004796025.1| - 3.8e-05 23.7 1.0 0.043 13.7 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family WaaY PF06176.11 gi|344211705|ref|YP_004796025.1| - 0.066 12.8 0.0 0.089 12.4 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Kinase-PolyVal PF18762.1 gi|344211705|ref|YP_004796025.1| - 0.12 12.3 0.1 0.19 11.7 0.1 1.3 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Pkinase PF00069.25 gi|344211705|ref|YP_004796025.1| - 0.19 11.1 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain Acyl-CoA_dh_1 PF00441.24 gi|344211706|ref|YP_004796026.1| - 1.5e-46 158.3 0.3 2.1e-46 157.8 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344211706|ref|YP_004796026.1| - 1.1e-37 129.1 0.1 2e-37 128.3 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344211706|ref|YP_004796026.1| - 5.3e-25 87.5 0.0 1.1e-24 86.4 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|344211706|ref|YP_004796026.1| - 2.2e-17 63.6 0.3 3.1e-17 63.1 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Usp PF00582.26 gi|344211707|ref|YP_004796027.1| - 1.2e-13 51.7 4.7 1.4e-13 51.5 4.7 1.0 1 0 0 1 1 1 1 Universal stress protein family CAP59_mtransfer PF11735.8 gi|344211707|ref|YP_004796027.1| - 0.021 14.5 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 RtcB PF01139.17 gi|344211708|ref|YP_004796028.1| - 4.7e-58 197.3 0.0 5.4e-29 101.6 0.0 2.1 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB MgtE_N PF03448.17 gi|344211708|ref|YP_004796028.1| - 0.14 12.8 0.1 1.5 9.4 0.0 2.7 3 1 0 3 3 3 0 MgtE intracellular N domain DoxX PF07681.12 gi|344211709|ref|YP_004796029.1| - 1.6e-08 35.0 9.2 1.6e-08 35.0 9.2 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|344211709|ref|YP_004796029.1| - 3.6e-05 23.7 9.4 0.00019 21.4 9.4 1.9 1 1 0 1 1 1 1 TQO small subunit DoxD VKG_Carbox PF05090.14 gi|344211709|ref|YP_004796029.1| - 0.02 13.8 0.5 0.02 13.8 0.5 1.8 1 1 0 2 2 2 0 Vitamin K-dependent gamma-carboxylase Borrelia_P13 PF05628.12 gi|344211710|ref|YP_004796030.1| - 0.076 13.0 0.5 0.1 12.6 0.5 1.2 1 0 0 1 1 1 0 Borrelia membrane protein P13 YdjM PF04307.14 gi|344211711|ref|YP_004796031.1| - 4e-08 32.8 1.0 6.2e-08 32.1 1.0 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase CDP-OH_P_transf PF01066.21 gi|344211712|ref|YP_004796032.1| - 2.1e-08 34.8 2.9 2.1e-08 34.8 2.9 3.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Abhydrolase_6 PF12697.7 gi|344211713|ref|YP_004796033.1| - 5.4e-16 59.9 11.6 6.3e-16 59.7 11.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|344211713|ref|YP_004796033.1| - 5.1e-12 45.6 0.2 9.1e-12 44.8 0.2 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|344211713|ref|YP_004796033.1| - 2e-08 34.2 0.1 0.0042 16.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|344211713|ref|YP_004796033.1| - 0.019 15.1 0.0 0.047 13.8 0.0 1.7 1 1 0 1 1 1 0 TAP-like protein Abhydrolase_5 PF12695.7 gi|344211713|ref|YP_004796033.1| - 0.13 12.0 0.0 0.94 9.2 0.0 2.0 2 0 0 2 2 2 0 Alpha/beta hydrolase family AAA PF00004.29 gi|344211715|ref|YP_004796035.1| - 5.2e-100 331.1 0.0 2.2e-49 167.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|344211715|ref|YP_004796035.1| - 1.5e-26 91.9 4.8 6.7e-15 54.6 0.8 3.1 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|344211715|ref|YP_004796035.1| - 3.4e-25 88.0 0.0 2.5e-24 85.3 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|344211715|ref|YP_004796035.1| - 1.6e-18 67.4 0.1 2e-09 37.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|344211715|ref|YP_004796035.1| - 2.9e-16 59.6 0.0 8.7e-08 32.1 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|344211715|ref|YP_004796035.1| - 4.1e-15 55.3 0.3 1.1e-14 54.0 0.3 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|344211715|ref|YP_004796035.1| - 3.9e-13 50.2 0.0 3.6e-06 27.5 0.0 3.4 2 1 1 3 3 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|344211715|ref|YP_004796035.1| - 6.8e-11 42.3 1.1 0.00012 22.1 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|344211715|ref|YP_004796035.1| - 7e-11 42.6 0.2 0.0023 18.2 0.1 3.7 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|344211715|ref|YP_004796035.1| - 9.5e-11 42.0 0.0 0.00019 21.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|344211715|ref|YP_004796035.1| - 4.6e-10 39.6 0.0 0.00073 19.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|344211715|ref|YP_004796035.1| - 6.8e-10 38.7 0.0 0.0002 20.7 0.0 2.6 2 0 0 2 2 2 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|344211715|ref|YP_004796035.1| - 3.2e-08 33.5 0.0 0.0023 17.7 0.0 2.7 3 0 0 3 3 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|344211715|ref|YP_004796035.1| - 2.3e-07 31.2 0.0 0.032 14.6 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|344211715|ref|YP_004796035.1| - 3.7e-07 29.8 0.0 0.037 13.6 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region Mg_chelatase PF01078.21 gi|344211715|ref|YP_004796035.1| - 5e-07 29.3 0.4 0.014 14.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|344211715|ref|YP_004796035.1| - 7.2e-07 28.6 0.0 0.0025 17.0 0.0 3.0 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|344211715|ref|YP_004796035.1| - 2e-06 28.3 0.0 0.14 12.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|344211715|ref|YP_004796035.1| - 3.3e-06 26.6 0.1 0.26 10.6 0.0 3.6 2 1 1 3 3 3 2 KaiC AAA_25 PF13481.6 gi|344211715|ref|YP_004796035.1| - 4.3e-06 26.4 0.7 2.4 7.7 0.0 4.1 3 1 0 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|344211715|ref|YP_004796035.1| - 4.3e-06 27.1 0.0 0.076 13.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|344211715|ref|YP_004796035.1| - 4.6e-06 26.5 0.0 0.037 13.9 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|344211715|ref|YP_004796035.1| - 7.3e-06 25.8 0.0 0.17 11.5 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain TsaE PF02367.17 gi|344211715|ref|YP_004796035.1| - 1.2e-05 25.3 0.0 0.22 11.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|344211715|ref|YP_004796035.1| - 1.6e-05 24.4 0.1 0.056 12.9 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_11 PF13086.6 gi|344211715|ref|YP_004796035.1| - 1.8e-05 24.7 0.0 0.14 11.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|344211715|ref|YP_004796035.1| - 1.9e-05 24.6 0.1 0.87 9.5 0.0 3.6 3 0 0 3 3 3 2 NACHT domain ABC_tran PF00005.27 gi|344211715|ref|YP_004796035.1| - 2.2e-05 25.0 0.0 0.16 12.4 0.0 2.7 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|344211715|ref|YP_004796035.1| - 4.5e-05 23.3 0.1 0.19 11.4 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_30 PF13604.6 gi|344211715|ref|YP_004796035.1| - 4.8e-05 23.2 0.0 0.21 11.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.9 gi|344211715|ref|YP_004796035.1| - 8.1e-05 22.0 0.0 0.33 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Zeta_toxin PF06414.12 gi|344211715|ref|YP_004796035.1| - 0.0001 21.7 0.1 0.28 10.4 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Parvo_NS1 PF01057.17 gi|344211715|ref|YP_004796035.1| - 0.00022 20.4 0.1 0.63 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.22 gi|344211715|ref|YP_004796035.1| - 0.00025 20.3 0.0 0.85 8.8 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Bac_DnaA PF00308.18 gi|344211715|ref|YP_004796035.1| - 0.00031 20.6 0.0 0.22 11.4 0.0 2.6 2 1 0 2 2 2 1 Bacterial dnaA protein Vps4_C PF09336.10 gi|344211715|ref|YP_004796035.1| - 0.00046 20.1 0.1 0.065 13.2 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_17 PF13207.6 gi|344211715|ref|YP_004796035.1| - 0.00051 20.5 0.1 2.7 8.4 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|344211715|ref|YP_004796035.1| - 0.0012 19.2 1.0 2.6 8.4 0.0 2.9 2 1 1 3 3 2 1 AAA domain ATPase_2 PF01637.18 gi|344211715|ref|YP_004796035.1| - 0.0013 18.7 0.0 0.78 9.6 0.0 2.9 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|344211715|ref|YP_004796035.1| - 0.0016 18.4 2.1 1.3 8.9 0.0 3.7 3 1 1 4 4 3 1 NTPase Sigma54_activ_2 PF14532.6 gi|344211715|ref|YP_004796035.1| - 0.0037 17.4 0.0 3.5 7.8 0.0 2.9 3 0 0 3 3 2 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|344211715|ref|YP_004796035.1| - 0.0048 16.0 0.0 2.4 7.2 0.0 3.1 3 0 0 3 3 3 1 Type II/IV secretion system protein ResIII PF04851.15 gi|344211715|ref|YP_004796035.1| - 0.011 15.8 0.0 4.1 7.4 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Guanylate_kin PF00625.21 gi|344211715|ref|YP_004796035.1| - 0.023 14.4 0.2 31 4.2 0.0 3.7 2 1 1 3 3 3 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|344211715|ref|YP_004796035.1| - 0.025 13.5 0.0 4.5 6.1 0.0 2.7 3 0 0 3 3 2 0 AFG1-like ATPase Zot PF05707.12 gi|344211715|ref|YP_004796035.1| - 0.027 14.1 0.0 1.3 8.6 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Rad17 PF03215.15 gi|344211715|ref|YP_004796035.1| - 0.037 13.9 0.0 6.8 6.6 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|344211715|ref|YP_004796035.1| - 0.044 13.4 0.0 2.2 7.9 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin PF02224.18 gi|344211715|ref|YP_004796035.1| - 0.044 13.5 0.2 14 5.4 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase Torsin PF06309.11 gi|344211715|ref|YP_004796035.1| - 0.11 12.6 0.0 5.5 7.1 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.14 gi|344211715|ref|YP_004796035.1| - 0.11 11.6 0.0 3.2 6.8 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase TniB PF05621.11 gi|344211715|ref|YP_004796035.1| - 0.12 11.7 0.0 28 4.0 0.0 3.1 2 1 1 3 3 3 0 Bacterial TniB protein Viral_helicase1 PF01443.18 gi|344211715|ref|YP_004796035.1| - 0.15 11.8 0.0 17 5.1 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|344211715|ref|YP_004796035.1| - 0.16 11.7 0.0 28 4.6 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain COOH-NH2_lig PF14395.6 gi|344211715|ref|YP_004796035.1| - 0.17 11.0 0.9 8.4 5.5 0.0 2.7 3 0 0 3 3 3 0 Phage phiEco32-like COOH.NH2 ligase-type 2 ApoC-I PF04691.12 gi|344211715|ref|YP_004796035.1| - 0.2 11.6 0.1 1.5 8.8 0.0 2.5 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) Regulator_TrmB PF11495.8 gi|344211716|ref|YP_004796036.1| - 3.5e-59 199.8 0.0 3.9e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HisKA PF00512.25 gi|344211717|ref|YP_004796037.1| - 2e-12 46.9 1.3 1.5e-11 44.2 2.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|344211717|ref|YP_004796037.1| - 7.6e-10 39.2 0.5 3.8e-09 37.0 0.0 2.3 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|344211717|ref|YP_004796037.1| - 1e-05 25.9 0.1 2.7e-05 24.5 0.0 1.8 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|344211717|ref|YP_004796037.1| - 4.1e-05 23.7 0.0 0.0001 22.4 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|344211717|ref|YP_004796037.1| - 0.00044 20.9 0.1 0.0011 19.6 0.1 1.7 1 0 0 1 1 1 1 GAF domain baeRF_family8 PF18851.1 gi|344211717|ref|YP_004796037.1| - 0.02 15.0 0.5 0.076 13.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 8 DUF420 PF04238.12 gi|344211718|ref|YP_004796038.1| - 9.4e-35 119.8 5.3 1.4e-34 119.2 5.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|344211718|ref|YP_004796038.1| - 1.3e-05 25.5 5.3 1.9e-05 24.9 2.8 2.2 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) DUF2897 PF11446.8 gi|344211718|ref|YP_004796038.1| - 4.5 7.2 4.7 2.7 7.9 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) Acetyltransf_3 PF13302.7 gi|344211719|ref|YP_004796039.1| - 1e-23 84.5 0.0 1.2e-23 84.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344211719|ref|YP_004796039.1| - 8.2e-09 35.8 0.0 3.3e-08 33.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344211719|ref|YP_004796039.1| - 1.4e-08 35.0 0.0 1.8e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family GNAT_acetyltran PF12746.7 gi|344211719|ref|YP_004796039.1| - 0.00062 19.4 0.0 0.00087 18.9 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_8 PF13523.6 gi|344211719|ref|YP_004796039.1| - 0.0037 17.0 0.2 0.01 15.5 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211719|ref|YP_004796039.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein GATase_7 PF13537.6 gi|344211720|ref|YP_004796040.1| - 3.3e-18 65.8 0.0 7.6e-18 64.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|344211720|ref|YP_004796040.1| - 9.8e-18 64.7 0.0 2e-17 63.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|344211720|ref|YP_004796040.1| - 6e-07 29.1 0.1 1.3e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|344211720|ref|YP_004796040.1| - 0.00065 18.7 0.0 0.0014 17.6 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.19 gi|344211721|ref|YP_004796041.1| - 2e-22 79.1 13.0 2.2e-22 78.9 13.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-piccolo PF05715.13 gi|344211721|ref|YP_004796041.1| - 0.0062 16.7 4.1 0.023 14.8 4.1 1.8 1 1 0 1 1 1 1 Piccolo Zn-finger DZR PF12773.7 gi|344211721|ref|YP_004796041.1| - 0.0087 16.1 3.3 0.012 15.7 3.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|344211721|ref|YP_004796041.1| - 0.069 12.6 2.5 4.9 6.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344211721|ref|YP_004796041.1| - 0.083 12.8 4.7 0.1 12.5 4.7 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|344211721|ref|YP_004796041.1| - 0.093 12.8 2.3 0.1 12.6 2.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|344211721|ref|YP_004796041.1| - 0.2 11.4 6.6 1 9.2 6.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain LSM PF01423.22 gi|344211722|ref|YP_004796042.1| - 4.7e-15 55.0 0.7 7.9e-13 47.9 0.7 2.0 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|344211722|ref|YP_004796042.1| - 4.3e-05 23.6 0.3 0.00047 20.2 0.1 1.9 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|344211722|ref|YP_004796042.1| - 0.0011 19.1 0.1 0.0013 18.8 0.1 1.1 1 0 0 1 1 1 1 RimP C-terminal SH3 domain DUF2642 PF10842.8 gi|344211722|ref|YP_004796042.1| - 0.0038 17.0 0.0 0.0051 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2642) Hfq PF17209.3 gi|344211722|ref|YP_004796042.1| - 0.012 15.2 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 Hfq protein BPL_C PF02237.17 gi|344211722|ref|YP_004796042.1| - 0.1 12.5 0.6 0.14 12.1 0.6 1.4 1 1 0 1 1 1 0 Biotin protein ligase C terminal domain Peptidase_M42 PF05343.14 gi|344211723|ref|YP_004796043.1| - 5.6e-79 265.2 2.6 6.4e-79 265.0 2.6 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|344211723|ref|YP_004796043.1| - 4.5e-10 39.6 0.3 7.1e-10 38.9 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|344211723|ref|YP_004796043.1| - 3.1e-06 26.2 0.0 0.00085 18.2 0.0 2.3 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) ADH_zinc_N PF00107.26 gi|344211723|ref|YP_004796043.1| - 0.06 13.3 2.4 0.4 10.7 0.2 2.4 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Adeno_E3 PF06040.11 gi|344211724|ref|YP_004796044.1| - 0.2 11.8 0.0 0.24 11.6 0.0 1.1 1 0 0 1 1 1 0 Adenovirus E3 protein Zincin_2 PF10103.9 gi|344211725|ref|YP_004796045.1| - 4.5e-64 216.8 5.2 6.5e-34 117.7 0.9 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase HrcA_DNA-bdg PF03444.15 gi|344211726|ref|YP_004796046.1| - 6.7e-29 99.4 0.0 9.6e-29 98.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 gi|344211726|ref|YP_004796046.1| - 5.1e-08 32.7 0.0 7.9e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|344211726|ref|YP_004796046.1| - 4.6e-07 30.1 0.0 1e-06 29.0 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.19 gi|344211726|ref|YP_004796046.1| - 0.00075 19.3 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344211726|ref|YP_004796046.1| - 0.012 15.6 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344211726|ref|YP_004796046.1| - 0.076 12.8 0.2 0.13 12.0 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344211726|ref|YP_004796046.1| - 0.093 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phosphodiest PF01663.22 gi|344211727|ref|YP_004796047.1| - 2.7e-37 129.2 0.1 3.9e-36 125.4 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase zf-C2H2 PF00096.26 gi|344211729|ref|YP_004796049.1| - 0.0021 18.4 0.1 0.0031 17.9 0.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-met PF12874.7 gi|344211729|ref|YP_004796049.1| - 0.014 15.8 0.1 0.018 15.4 0.1 1.2 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 gi|344211729|ref|YP_004796049.1| - 0.016 15.5 0.2 0.021 15.1 0.2 1.2 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2H2_3 PF13878.6 gi|344211729|ref|YP_004796049.1| - 0.18 11.6 3.2 0.31 10.9 3.2 1.5 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO AAA PF00004.29 gi|344211730|ref|YP_004796050.1| - 1e-93 310.7 0.0 1.3e-45 155.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|344211730|ref|YP_004796050.1| - 6.8e-30 102.6 6.0 1.4e-14 53.6 0.4 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|344211730|ref|YP_004796050.1| - 6.9e-22 77.4 0.3 4.7e-21 74.7 0.2 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.6 gi|344211730|ref|YP_004796050.1| - 4.7e-16 59.6 0.8 2e-07 31.5 0.0 4.0 2 1 0 3 3 3 2 AAA ATPase domain RuvB_N PF05496.12 gi|344211730|ref|YP_004796050.1| - 7.2e-16 58.3 0.0 6.4e-07 29.2 0.0 3.3 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|344211730|ref|YP_004796050.1| - 2e-12 47.6 0.0 5e-06 26.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|344211730|ref|YP_004796050.1| - 8.2e-12 45.5 0.0 0.00015 21.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|344211730|ref|YP_004796050.1| - 9.7e-12 45.3 1.3 0.011 16.0 0.0 4.4 2 2 1 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|344211730|ref|YP_004796050.1| - 1.7e-10 41.0 1.0 0.00071 19.6 0.0 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|344211730|ref|YP_004796050.1| - 5.8e-09 35.6 0.0 0.0031 16.8 0.0 2.6 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|344211730|ref|YP_004796050.1| - 4.1e-08 33.9 0.0 0.015 15.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|344211730|ref|YP_004796050.1| - 3.6e-07 30.3 0.0 0.013 15.5 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|344211730|ref|YP_004796050.1| - 3.7e-07 30.5 0.1 0.013 15.7 0.0 3.0 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|344211730|ref|YP_004796050.1| - 6.1e-07 29.3 0.0 0.028 14.1 0.0 2.6 2 1 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|344211730|ref|YP_004796050.1| - 1.8e-06 28.3 0.0 0.1 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|344211730|ref|YP_004796050.1| - 1.9e-06 27.4 0.2 0.057 12.8 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|344211730|ref|YP_004796050.1| - 3.6e-06 26.8 0.0 0.29 10.8 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain DUF815 PF05673.13 gi|344211730|ref|YP_004796050.1| - 4e-06 26.2 0.0 0.001 18.3 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) TsaE PF02367.17 gi|344211730|ref|YP_004796050.1| - 7.2e-06 26.0 0.0 0.16 12.0 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|344211730|ref|YP_004796050.1| - 3.7e-05 23.7 0.4 3.2 7.6 0.0 3.7 4 0 0 4 4 4 2 NACHT domain AAA_11 PF13086.6 gi|344211730|ref|YP_004796050.1| - 4e-05 23.6 0.0 0.091 12.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|344211730|ref|YP_004796050.1| - 4.1e-05 23.4 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|344211730|ref|YP_004796050.1| - 4.3e-05 23.3 0.0 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|344211730|ref|YP_004796050.1| - 6.2e-05 23.5 0.0 0.61 10.6 0.0 2.6 2 0 0 2 2 2 2 ABC transporter ATPase PF06745.13 gi|344211730|ref|YP_004796050.1| - 9.9e-05 21.8 0.2 1.4 8.2 0.0 3.8 3 1 1 4 4 4 2 KaiC AAA_25 PF13481.6 gi|344211730|ref|YP_004796050.1| - 0.0001 22.0 10.4 0.58 9.7 1.4 4.6 2 2 2 4 4 4 2 AAA domain Zeta_toxin PF06414.12 gi|344211730|ref|YP_004796050.1| - 0.00014 21.2 0.0 0.27 10.5 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|344211730|ref|YP_004796050.1| - 0.00015 21.4 0.0 0.31 10.5 0.0 2.7 3 0 0 3 3 3 2 P-loop containing dynein motor region Parvo_NS1 PF01057.17 gi|344211730|ref|YP_004796050.1| - 0.00017 20.8 0.0 0.34 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|344211730|ref|YP_004796050.1| - 0.00018 21.0 0.0 0.86 9.0 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein AAA_19 PF13245.6 gi|344211730|ref|YP_004796050.1| - 0.00028 21.3 0.0 0.39 11.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|344211730|ref|YP_004796050.1| - 0.00045 19.6 0.0 0.32 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|344211730|ref|YP_004796050.1| - 0.00051 19.3 0.0 0.28 10.3 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain CDC48_2 PF02933.17 gi|344211730|ref|YP_004796050.1| - 0.00061 19.5 1.0 0.00061 19.5 1.0 2.5 2 1 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 Sigma54_activ_2 PF14532.6 gi|344211730|ref|YP_004796050.1| - 0.00082 19.5 0.0 0.37 10.9 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain CPT PF07931.12 gi|344211730|ref|YP_004796050.1| - 0.0013 18.6 0.1 1 9.2 0.0 3.1 3 0 0 3 3 2 1 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|344211730|ref|YP_004796050.1| - 0.0016 18.2 4.7 0.44 10.3 0.8 3.6 3 1 0 3 3 3 1 AAA domain TniB PF05621.11 gi|344211730|ref|YP_004796050.1| - 0.0033 16.8 0.0 20 4.5 0.0 3.9 3 1 1 4 4 4 0 Bacterial TniB protein AAA_17 PF13207.6 gi|344211730|ref|YP_004796050.1| - 0.0048 17.3 0.0 2.4 8.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|344211730|ref|YP_004796050.1| - 0.0088 16.0 0.0 0.9 9.4 0.0 2.9 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|344211730|ref|YP_004796050.1| - 0.022 14.5 0.0 5.3 6.7 0.0 2.9 2 0 0 2 2 2 0 Cytidylate kinase NTPase_1 PF03266.15 gi|344211730|ref|YP_004796050.1| - 0.052 13.5 0.2 15 5.4 0.0 3.2 2 2 1 3 3 3 0 NTPase DUF1905 PF08922.11 gi|344211730|ref|YP_004796050.1| - 0.055 13.5 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Torsin PF06309.11 gi|344211730|ref|YP_004796050.1| - 0.11 12.6 0.0 2.8 8.1 0.0 2.3 2 0 0 2 2 2 0 Torsin AFG1_ATPase PF03969.16 gi|344211730|ref|YP_004796050.1| - 0.12 11.3 0.0 6.9 5.4 0.0 2.5 2 0 0 2 2 2 0 AFG1-like ATPase Viral_helicase1 PF01443.18 gi|344211730|ref|YP_004796050.1| - 0.18 11.5 0.0 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.12 gi|344211730|ref|YP_004796050.1| - 0.24 11.0 0.2 25 4.4 0.0 3.2 2 2 2 4 4 4 0 Zonular occludens toxin (Zot) DUF4349 PF14257.6 gi|344211731|ref|YP_004796051.1| - 5.7e-60 202.4 5.7 7.1e-60 202.1 5.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) DivIC PF04977.15 gi|344211731|ref|YP_004796051.1| - 0.00023 20.9 7.0 1.3 8.9 1.7 3.2 2 1 1 3 3 3 3 Septum formation initiator Spc7 PF08317.11 gi|344211731|ref|YP_004796051.1| - 0.0011 18.0 0.7 0.0014 17.6 0.7 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|344211731|ref|YP_004796051.1| - 0.016 15.2 5.7 0.026 14.5 5.7 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lge1 PF11488.8 gi|344211731|ref|YP_004796051.1| - 0.028 14.6 0.8 0.052 13.7 0.8 1.4 1 0 0 1 1 1 0 Transcriptional regulatory protein LGE1 TNT PF14021.6 gi|344211731|ref|YP_004796051.1| - 0.054 14.1 0.0 0.18 12.4 0.0 1.8 1 0 0 1 1 1 0 Tuberculosis necrotizing toxin ABC_tran_CTD PF16326.5 gi|344211731|ref|YP_004796051.1| - 0.076 13.3 4.3 0.27 11.5 1.0 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain Spc24 PF08286.11 gi|344211731|ref|YP_004796051.1| - 0.18 12.0 4.6 1.1 9.5 1.0 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 GAS PF13851.6 gi|344211731|ref|YP_004796051.1| - 0.21 10.9 3.5 0.31 10.4 3.5 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TMF_TATA_bd PF12325.8 gi|344211731|ref|YP_004796051.1| - 0.35 11.1 8.5 0.27 11.5 2.8 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding CLZ PF16526.5 gi|344211731|ref|YP_004796051.1| - 0.56 10.6 6.2 1.1 9.7 1.1 2.4 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels XhlA PF10779.9 gi|344211731|ref|YP_004796051.1| - 0.99 9.7 3.8 6.7 7.0 0.7 2.5 1 1 1 2 2 2 0 Haemolysin XhlA ADIP PF11559.8 gi|344211731|ref|YP_004796051.1| - 2.1 8.4 7.3 1.6 8.8 3.0 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Phageshock_PspG PF09583.10 gi|344211731|ref|YP_004796051.1| - 2.4 8.5 8.8 0.21 11.9 2.4 2.0 2 0 0 2 2 2 0 Phage shock protein G (Phageshock_PspG) DUF4140 PF13600.6 gi|344211731|ref|YP_004796051.1| - 3.1 8.3 9.3 1.4e+02 3.0 9.3 2.4 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Osmo_CC PF08946.10 gi|344211731|ref|YP_004796051.1| - 4.6 7.6 5.9 20 5.5 1.6 2.2 2 0 0 2 2 2 0 Osmosensory transporter coiled coil CN_hydrolase PF00795.22 gi|344211732|ref|YP_004796052.1| - 2e-48 165.0 0.0 2.2e-48 164.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.9 gi|344211733|ref|YP_004796053.1| - 5.5e-13 49.4 1.7 6.2e-13 49.2 1.7 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|344211733|ref|YP_004796053.1| - 1.1e-06 28.8 0.3 1.3e-06 28.6 0.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|344211733|ref|YP_004796053.1| - 6.1e-06 26.0 0.0 7.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) AHSA1 PF08327.11 gi|344211733|ref|YP_004796053.1| - 0.0068 16.6 1.8 0.064 13.5 1.8 2.1 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein HTH_AsnC-type PF13404.6 gi|344211734|ref|YP_004796054.1| - 0.00031 20.5 0.6 0.0032 17.2 0.6 2.1 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|344211734|ref|YP_004796054.1| - 0.0015 18.1 0.6 0.012 15.2 0.6 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|344211734|ref|YP_004796054.1| - 0.0064 16.8 0.0 0.008 16.5 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.7 gi|344211734|ref|YP_004796054.1| - 0.0066 16.5 0.1 0.0079 16.2 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|344211734|ref|YP_004796054.1| - 0.0079 16.2 0.1 0.016 15.2 0.0 1.5 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus LexA_DNA_bind PF01726.16 gi|344211734|ref|YP_004796054.1| - 0.029 14.1 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.7 gi|344211734|ref|YP_004796054.1| - 0.042 13.7 0.0 0.056 13.3 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|344211734|ref|YP_004796054.1| - 0.058 13.4 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TPPK_C PF12555.8 gi|344211735|ref|YP_004796055.1| - 2.5 8.2 9.9 1.5 9.0 3.3 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Trp_oprn_chp PF09534.10 gi|344211735|ref|YP_004796055.1| - 7.3 6.4 10.2 21 4.9 10.1 1.7 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) LEA_2 PF03168.13 gi|344211736|ref|YP_004796056.1| - 3.5e-17 62.8 0.5 3.9e-09 37.0 0.1 2.6 2 1 0 2 2 2 2 Late embryogenesis abundant protein DUF4307 PF14155.6 gi|344211736|ref|YP_004796056.1| - 0.059 13.2 0.9 0.17 11.7 0.9 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) HalOD1 PF18545.1 gi|344211737|ref|YP_004796057.1| - 4e-12 46.2 0.1 4.7e-12 46.0 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PhoU PF01895.19 gi|344211738|ref|YP_004796058.1| - 1.7e-16 60.4 6.9 1.9e-13 50.7 0.1 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|344211738|ref|YP_004796058.1| - 3.1e-06 27.0 0.0 6e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|344211739|ref|YP_004796059.1| - 8.5e-54 182.7 0.5 1.2e-53 182.2 0.5 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|344211739|ref|YP_004796059.1| - 1.3e-07 31.3 1.0 5.2e-07 29.3 1.0 2.1 1 1 0 1 1 1 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|344211739|ref|YP_004796059.1| - 0.0065 15.8 0.0 0.014 14.7 0.0 1.5 1 1 0 1 1 1 1 Phosphofructokinase MoCF_biosynth PF00994.24 gi|344211740|ref|YP_004796060.1| - 1.6e-34 118.6 0.2 2.3e-34 118.1 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain AAA_lid_2 PF17863.1 gi|344211740|ref|YP_004796060.1| - 0.095 12.6 0.3 8 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA lid domain HTH_IclR PF09339.10 gi|344211741|ref|YP_004796061.1| - 0.0054 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF4897 PF16238.5 gi|344211741|ref|YP_004796061.1| - 0.0061 16.4 0.1 0.0094 15.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) HTH_24 PF13412.6 gi|344211741|ref|YP_004796061.1| - 0.16 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BPD_transp_2 PF02653.16 gi|344211742|ref|YP_004796062.1| - 1.8e-39 135.5 42.3 1.8e-39 135.5 42.3 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|344211743|ref|YP_004796063.1| - 7.8e-44 149.8 35.2 7.8e-44 149.8 35.2 2.3 2 1 1 3 3 3 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344211744|ref|YP_004796064.1| - 3.2e-29 102.2 0.0 4.3e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211744|ref|YP_004796064.1| - 1.1e-10 41.9 2.9 4e-05 23.6 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|344211744|ref|YP_004796064.1| - 2.5e-07 30.5 0.0 5.8e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|344211744|ref|YP_004796064.1| - 9e-05 22.0 0.6 0.34 10.3 0.3 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|344211744|ref|YP_004796064.1| - 0.00027 21.5 1.2 0.00043 20.8 1.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|344211744|ref|YP_004796064.1| - 0.0027 17.4 0.2 0.005 16.6 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|344211744|ref|YP_004796064.1| - 0.011 15.5 0.1 0.016 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|344211744|ref|YP_004796064.1| - 0.063 12.9 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|344211744|ref|YP_004796064.1| - 0.1 12.7 0.2 0.38 10.9 0.1 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|344211744|ref|YP_004796064.1| - 0.13 12.2 0.3 0.41 10.5 0.1 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|344211744|ref|YP_004796064.1| - 0.13 11.8 0.3 9.9 5.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|344211745|ref|YP_004796065.1| - 1.5e-30 106.5 0.0 2.7e-30 105.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|344211745|ref|YP_004796065.1| - 4.8e-11 43.0 0.3 9.4e-05 22.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211745|ref|YP_004796065.1| - 5.2e-05 22.8 0.1 0.002 17.6 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344211745|ref|YP_004796065.1| - 0.0014 18.4 0.0 0.0027 17.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344211745|ref|YP_004796065.1| - 0.0014 19.1 0.0 0.0021 18.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|344211745|ref|YP_004796065.1| - 0.0015 19.1 0.0 0.0022 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|344211745|ref|YP_004796065.1| - 0.0029 17.2 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344211745|ref|YP_004796065.1| - 0.003 17.3 0.1 0.0068 16.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|344211745|ref|YP_004796065.1| - 0.0032 17.2 0.0 0.03 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211745|ref|YP_004796065.1| - 0.012 15.8 0.2 0.11 12.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|344211745|ref|YP_004796065.1| - 0.043 14.0 0.0 0.12 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|344211745|ref|YP_004796065.1| - 0.048 13.6 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|344211745|ref|YP_004796065.1| - 0.049 14.0 0.4 0.34 11.3 0.1 2.3 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|344211745|ref|YP_004796065.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.7 gi|344211745|ref|YP_004796065.1| - 0.13 11.2 0.0 0.24 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Dynamin_N PF00350.23 gi|344211745|ref|YP_004796065.1| - 0.16 12.0 0.0 0.39 10.8 0.0 1.6 1 1 0 1 1 1 0 Dynamin family AAA_24 PF13479.6 gi|344211745|ref|YP_004796065.1| - 0.17 11.6 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|344211745|ref|YP_004796065.1| - 0.19 11.8 0.0 0.36 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344211745|ref|YP_004796065.1| - 0.19 12.3 0.7 1.1 9.8 0.2 2.2 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344211745|ref|YP_004796065.1| - 0.19 11.8 0.1 0.61 10.2 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_7 PF12775.7 gi|344211745|ref|YP_004796065.1| - 0.22 11.1 0.1 0.32 10.5 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|344211745|ref|YP_004796065.1| - 0.23 10.6 0.2 0.33 10.1 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.6 gi|344211745|ref|YP_004796065.1| - 0.6 10.4 2.6 10 6.5 2.5 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Peripla_BP_6 PF13458.6 gi|344211746|ref|YP_004796066.1| - 1.9e-27 96.8 14.5 3.1e-22 79.7 3.7 2.2 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.28 gi|344211746|ref|YP_004796066.1| - 8.3e-19 67.9 0.4 6.8e-14 51.7 0.1 2.2 2 0 0 2 2 2 2 Receptor family ligand binding region TrbI PF03743.14 gi|344211746|ref|YP_004796066.1| - 0.12 12.2 5.6 0.12 12.2 0.7 2.5 2 0 0 2 2 2 0 Bacterial conjugation TrbI-like protein Sod_Fe_N PF00081.22 gi|344211747|ref|YP_004796067.1| - 4.2e-29 100.8 0.6 7.8e-29 100.0 0.6 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|344211747|ref|YP_004796067.1| - 3.1e-28 97.9 0.0 4.7e-28 97.4 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain FAD_binding_7 PF03441.14 gi|344211748|ref|YP_004796068.1| - 1.4e-78 263.1 2.4 1.9e-78 262.6 2.4 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|344211748|ref|YP_004796068.1| - 1.9e-44 151.5 0.1 4.5e-44 150.3 0.0 1.6 2 0 0 2 2 2 1 DNA photolyase Amidohydro_2 PF04909.14 gi|344211748|ref|YP_004796068.1| - 0.0003 20.7 1.7 0.00035 20.5 0.4 1.7 2 0 0 2 2 2 1 Amidohydrolase ECH_1 PF00378.20 gi|344211749|ref|YP_004796069.1| - 1.7e-55 188.0 0.0 2e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|344211749|ref|YP_004796069.1| - 2.1e-33 116.2 0.1 1.3e-31 110.4 0.0 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase HTH_Tnp_Tc3_2 PF01498.18 gi|344211750|ref|YP_004796070.1| - 6.2e-05 23.2 0.0 0.00011 22.4 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_24 PF13412.6 gi|344211750|ref|YP_004796070.1| - 0.0089 15.6 0.0 0.26 10.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344211750|ref|YP_004796070.1| - 0.019 14.8 0.7 0.038 13.8 0.7 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_32 PF13565.6 gi|344211750|ref|YP_004796070.1| - 0.021 15.4 0.0 0.044 14.4 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 gi|344211750|ref|YP_004796070.1| - 0.034 14.2 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Arg_repressor PF01316.21 gi|344211750|ref|YP_004796070.1| - 0.07 12.9 0.0 0.19 11.5 0.0 1.7 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain PqqD PF05402.12 gi|344211750|ref|YP_004796070.1| - 0.16 12.3 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) UPF0058 PF01893.16 gi|344211751|ref|YP_004796071.1| - 3.4e-34 117.0 0.5 3.8e-34 116.8 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 RHH_1 PF01402.21 gi|344211752|ref|YP_004796072.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Chorismate_bind PF00425.18 gi|344211753|ref|YP_004796073.1| - 2.3e-79 266.6 0.0 2.9e-79 266.3 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme DUF615 PF04751.14 gi|344211753|ref|YP_004796073.1| - 0.051 13.6 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF615) GETHR PF05671.11 gi|344211753|ref|YP_004796073.1| - 1.7 8.0 7.8 0.54 9.7 0.8 2.8 2 0 0 2 2 2 0 GETHR pentapeptide repeat (5 copies) TPP_enzyme_N PF02776.18 gi|344211754|ref|YP_004796074.1| - 1.1e-34 119.5 0.0 2.1e-34 118.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|344211754|ref|YP_004796074.1| - 8.6e-11 41.9 0.0 1.3e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|344211754|ref|YP_004796074.1| - 2.4e-06 27.4 0.0 4.8e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|344211754|ref|YP_004796074.1| - 0.048 13.4 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain DnaJ PF00226.31 gi|344211755|ref|YP_004796075.1| - 3.3e-15 56.0 0.1 5.1e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain NPR3 PF03666.13 gi|344211755|ref|YP_004796075.1| - 0.56 8.9 2.4 0.69 8.6 2.4 1.1 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 DPM3 PF08285.11 gi|344211755|ref|YP_004796075.1| - 7 6.9 7.6 5.4e+02 0.9 7.6 2.7 1 1 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) S_4TM PF18159.1 gi|344211756|ref|YP_004796076.1| - 0.048 13.0 0.1 0.048 12.9 0.1 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain V_ATPase_I PF01496.19 gi|344211756|ref|YP_004796076.1| - 0.26 9.2 0.0 0.26 9.1 0.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4834 PF16118.5 gi|344211756|ref|YP_004796076.1| - 0.47 11.4 2.0 2.4 9.2 2.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) ECH_1 PF00378.20 gi|344211757|ref|YP_004796077.1| - 8.7e-58 195.6 0.0 2e-46 158.4 0.0 2.0 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|344211757|ref|YP_004796077.1| - 3.3e-16 59.7 0.0 9.8e-15 54.9 0.0 2.3 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase CAP PF00188.26 gi|344211757|ref|YP_004796077.1| - 0.045 14.6 0.0 0.44 11.4 0.0 2.3 1 1 2 3 3 3 0 Cysteine-rich secretory protein family MarR PF01047.22 gi|344211758|ref|YP_004796078.1| - 0.00041 20.2 0.0 0.00055 19.8 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|344211758|ref|YP_004796078.1| - 0.00083 19.5 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|344211758|ref|YP_004796078.1| - 0.039 14.4 0.0 0.051 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|344211758|ref|YP_004796078.1| - 0.073 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family TANGO2 PF05742.12 gi|344211759|ref|YP_004796079.1| - 5.4e-26 92.2 0.0 3.4e-25 89.5 0.0 1.9 1 1 0 1 1 1 1 Transport and Golgi organisation 2 AAT PF03417.16 gi|344211759|ref|YP_004796079.1| - 0.014 15.1 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase AMP-binding PF00501.28 gi|344211760|ref|YP_004796080.1| - 2e-74 250.7 0.9 2.4e-74 250.5 0.9 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344211760|ref|YP_004796080.1| - 2.6e-18 66.7 1.3 1.3e-17 64.5 1.5 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.6 gi|344211761|ref|YP_004796081.1| - 1.6e-46 158.7 5.4 2.6e-46 158.0 5.4 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344211761|ref|YP_004796081.1| - 9.7e-05 22.6 0.7 0.0021 18.2 0.3 2.8 2 1 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|344211762|ref|YP_004796082.1| - 5.9e-35 120.8 18.4 7.8e-35 120.4 18.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family AMP-binding PF00501.28 gi|344211763|ref|YP_004796083.1| - 2.4e-90 303.1 0.2 2.9e-90 302.9 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344211763|ref|YP_004796083.1| - 4.8e-20 72.3 0.1 1.5e-19 70.7 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.7 gi|344211764|ref|YP_004796084.1| - 9.1e-37 125.5 0.2 1e-24 86.7 0.1 2.8 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|344211764|ref|YP_004796084.1| - 2.4e-21 76.1 5.8 5.7e-11 42.7 0.1 3.5 3 1 1 4 4 4 2 PAS fold Response_reg PF00072.24 gi|344211764|ref|YP_004796084.1| - 1.8e-20 73.2 0.3 1.2e-19 70.5 0.0 2.5 3 0 0 3 3 3 1 Response regulator receiver domain PAS_3 PF08447.12 gi|344211764|ref|YP_004796084.1| - 2.2e-20 72.7 0.1 4.4e-12 46.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.25 gi|344211764|ref|YP_004796084.1| - 2.9e-20 72.3 0.1 2.9e-10 40.1 0.0 2.9 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|344211764|ref|YP_004796084.1| - 1.7e-19 70.3 0.1 1.1e-18 67.7 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|344211764|ref|YP_004796084.1| - 4.7e-16 58.4 0.3 3.3e-07 30.2 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 gi|344211764|ref|YP_004796084.1| - 7.5e-13 49.0 1.4 1.1e-11 45.1 0.4 2.8 2 0 0 2 2 2 1 GAF domain HisKA PF00512.25 gi|344211764|ref|YP_004796084.1| - 2e-10 40.5 1.7 2e-10 40.5 1.7 2.5 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|344211764|ref|YP_004796084.1| - 3.9e-09 36.9 0.0 1.6e-08 34.9 0.0 2.1 2 0 0 2 2 2 1 GAF domain PAS_7 PF12860.7 gi|344211764|ref|YP_004796084.1| - 1.9e-05 24.8 3.0 0.0027 17.9 0.0 3.8 4 1 0 4 4 4 1 PAS fold HATPase_c_3 PF13589.6 gi|344211764|ref|YP_004796084.1| - 0.051 13.4 0.0 0.23 11.3 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ndr PF03096.14 gi|344211764|ref|YP_004796084.1| - 0.14 10.8 0.1 0.25 10.0 0.1 1.3 1 0 0 1 1 1 0 Ndr family Cnn_1N PF07989.11 gi|344211765|ref|YP_004796085.1| - 0.091 12.9 2.4 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 Cwf_Cwc_15 PF04889.12 gi|344211765|ref|YP_004796085.1| - 0.15 11.8 17.1 0.13 11.9 9.0 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein TPD52 PF04201.15 gi|344211765|ref|YP_004796085.1| - 0.41 10.3 2.7 9.4 5.8 0.1 2.2 2 0 0 2 2 2 0 Tumour protein D52 family SLATT_3 PF18184.1 gi|344211765|ref|YP_004796085.1| - 0.73 10.0 5.0 7 6.8 1.2 2.1 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 DUF1980 PF09323.10 gi|344211766|ref|YP_004796086.1| - 0.033 14.1 0.3 0.05 13.5 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1980) PGF-CTERM PF18204.1 gi|344211767|ref|YP_004796087.1| - 0.0011 18.9 3.8 0.0018 18.2 3.8 1.4 1 0 0 1 1 1 1 PGF-CTERM motif CARDB PF07705.11 gi|344211767|ref|YP_004796087.1| - 0.0096 16.2 1.7 0.046 14.0 0.1 2.3 2 1 1 3 3 3 1 CARDB Glyco_hydro_2 PF00703.21 gi|344211767|ref|YP_004796087.1| - 0.012 16.3 0.4 0.91 10.2 0.2 2.5 2 1 0 2 2 2 0 Glycosyl hydrolases family 2 Gram_pos_anchor PF00746.21 gi|344211767|ref|YP_004796087.1| - 0.05 13.5 0.1 0.05 13.5 0.1 1.7 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF2797 PF10977.8 gi|344211768|ref|YP_004796088.1| - 4.7e-24 85.6 5.9 6e-21 75.4 5.9 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) PBP PF01161.20 gi|344211769|ref|YP_004796089.1| - 1.2e-31 109.7 0.1 1.8e-31 109.2 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Epimerase PF01370.21 gi|344211770|ref|YP_004796090.1| - 9.5e-51 172.6 0.0 1.1e-50 172.4 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344211770|ref|YP_004796090.1| - 2.6e-39 135.6 0.0 1e-38 133.6 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|344211770|ref|YP_004796090.1| - 1.7e-19 70.1 0.0 7.7e-19 67.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|344211770|ref|YP_004796090.1| - 6.1e-19 68.2 0.0 7.8e-19 67.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|344211770|ref|YP_004796090.1| - 2.2e-17 63.0 0.0 2.8e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|344211770|ref|YP_004796090.1| - 2.5e-14 53.6 0.0 7.3e-14 52.1 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|344211770|ref|YP_004796090.1| - 1.1e-10 41.2 0.1 8.3e-07 28.4 0.1 2.8 1 1 0 1 1 1 1 Male sterility protein TrkA_N PF02254.18 gi|344211770|ref|YP_004796090.1| - 8.7e-08 32.4 0.6 1.9e-07 31.3 0.6 1.5 1 0 0 1 1 1 1 TrkA-N domain NmrA PF05368.13 gi|344211770|ref|YP_004796090.1| - 6.5e-05 22.6 0.0 0.00035 20.2 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 gi|344211770|ref|YP_004796090.1| - 0.00018 21.0 0.1 0.011 15.2 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase Ldh_1_N PF00056.23 gi|344211770|ref|YP_004796090.1| - 0.00047 20.3 0.1 0.00073 19.7 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344211770|ref|YP_004796090.1| - 0.062 13.6 0.4 0.1 12.8 0.4 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Thioredoxin_4 PF13462.6 gi|344211771|ref|YP_004796091.1| - 4.1e-32 111.6 0.0 5.7e-32 111.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|344211771|ref|YP_004796091.1| - 1.3e-11 44.7 1.2 2.4e-09 37.2 1.2 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|344211771|ref|YP_004796091.1| - 0.0061 17.0 0.4 0.021 15.3 0.4 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Trm56 PF01994.16 gi|344211772|ref|YP_004796092.1| - 4.4e-47 158.9 0.0 6e-47 158.5 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Sulfatase PF00884.23 gi|344211773|ref|YP_004796093.1| - 2.2e-35 122.6 0.1 3e-35 122.1 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344211773|ref|YP_004796093.1| - 2.4e-11 43.8 0.1 4e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|344211773|ref|YP_004796093.1| - 2.3e-05 23.2 0.0 0.00074 18.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|344211773|ref|YP_004796093.1| - 0.001 18.3 0.1 0.0017 17.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DHFR_1 PF00186.19 gi|344211774|ref|YP_004796094.1| - 1.8e-32 112.3 0.0 7.1e-32 110.3 0.0 1.7 1 1 0 1 1 1 1 Dihydrofolate reductase zf-ribbon_3 PF13248.6 gi|344211775|ref|YP_004796095.1| - 0.0016 17.8 1.5 0.0026 17.1 1.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|344211775|ref|YP_004796095.1| - 0.0056 16.8 1.0 0.013 15.7 0.9 1.7 2 0 0 2 2 2 1 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|344211775|ref|YP_004796095.1| - 0.035 14.5 2.1 0.083 13.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.7 gi|344211775|ref|YP_004796095.1| - 0.054 13.5 1.7 0.11 12.6 1.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon TFIIE_alpha PF02002.17 gi|344211776|ref|YP_004796096.1| - 2.3e-20 72.4 0.5 6.2e-20 71.0 0.0 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|344211776|ref|YP_004796096.1| - 0.0026 17.8 0.3 0.008 16.3 0.0 1.9 2 0 0 2 2 2 1 Sigma-70 region 3 Desulfoferrod_N PF06397.12 gi|344211776|ref|YP_004796096.1| - 0.0027 17.3 0.9 2 8.1 0.2 2.3 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain HypA PF01155.19 gi|344211776|ref|YP_004796096.1| - 0.0031 17.5 0.1 0.004 17.1 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|344211776|ref|YP_004796096.1| - 0.0078 15.8 1.4 2.7 7.7 0.1 2.5 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|344211776|ref|YP_004796096.1| - 0.017 14.5 1.5 0.47 9.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|344211776|ref|YP_004796096.1| - 0.031 14.4 5.1 0.1 12.7 5.0 1.9 1 1 1 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|344211776|ref|YP_004796096.1| - 0.054 13.5 0.4 0.093 12.7 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons TackOD1 PF18551.1 gi|344211776|ref|YP_004796096.1| - 0.057 13.1 0.7 0.11 12.2 0.5 1.5 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 NRDD PF13597.6 gi|344211776|ref|YP_004796096.1| - 0.064 12.0 0.1 0.083 11.7 0.1 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase PhnA_Zn_Ribbon PF08274.12 gi|344211776|ref|YP_004796096.1| - 0.072 13.1 2.0 6.2 6.9 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|344211776|ref|YP_004796096.1| - 0.082 12.6 3.3 1.4 8.8 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|344211776|ref|YP_004796096.1| - 0.083 12.9 0.5 0.17 11.9 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.6 gi|344211776|ref|YP_004796096.1| - 0.15 12.9 0.8 18 6.5 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.12 gi|344211776|ref|YP_004796096.1| - 0.2 11.2 5.8 2.2 7.9 0.5 2.7 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|344211776|ref|YP_004796096.1| - 0.3 11.1 3.1 1.8 8.6 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|344211776|ref|YP_004796096.1| - 0.59 10.0 3.0 14 5.7 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.6 gi|344211776|ref|YP_004796096.1| - 0.98 9.6 3.9 7.9 6.7 3.1 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2110 PF09883.9 gi|344211777|ref|YP_004796097.1| - 1.6e-89 299.3 0.0 1.9e-89 299.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) LPAM_1 PF08139.12 gi|344211778|ref|YP_004796098.1| - 0.14 12.7 0.8 0.35 11.4 0.8 1.8 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Nop PF01798.18 gi|344211779|ref|YP_004796099.1| - 7.2e-38 130.3 0.0 1e-37 129.8 0.0 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin Fibrillarin PF01269.17 gi|344211780|ref|YP_004796100.1| - 3.9e-59 199.5 0.0 4.6e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin Histidinol_dh PF00815.20 gi|344211780|ref|YP_004796100.1| - 0.058 12.4 0.1 0.074 12.1 0.1 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase GCS2 PF04107.13 gi|344211781|ref|YP_004796101.1| - 4.6e-76 255.9 0.0 5.5e-76 255.7 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|344211781|ref|YP_004796101.1| - 0.098 12.3 0.0 6.3 6.4 0.0 2.1 2 0 0 2 2 2 0 Putative amidoligase enzyme TrmB PF01978.19 gi|344211782|ref|YP_004796102.1| - 3.8e-08 33.1 0.1 6.3e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|344211782|ref|YP_004796102.1| - 2.7e-07 30.1 0.0 3.9e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|344211782|ref|YP_004796102.1| - 1.8e-05 24.7 0.4 3.2e-05 23.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344211782|ref|YP_004796102.1| - 8.6e-05 22.3 0.2 0.00014 21.6 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|344211782|ref|YP_004796102.1| - 9.5e-05 22.0 0.2 0.00023 20.7 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|344211782|ref|YP_004796102.1| - 0.00025 20.9 0.0 0.00043 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|344211782|ref|YP_004796102.1| - 0.00083 19.2 0.2 0.0018 18.1 0.2 1.6 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|344211782|ref|YP_004796102.1| - 0.00093 19.0 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|344211782|ref|YP_004796102.1| - 0.0013 18.6 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|344211782|ref|YP_004796102.1| - 0.0051 17.1 0.0 0.0081 16.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.11 gi|344211782|ref|YP_004796102.1| - 0.0096 16.0 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344211782|ref|YP_004796102.1| - 0.026 14.5 0.1 0.042 13.8 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Replic_Relax PF13814.6 gi|344211782|ref|YP_004796102.1| - 0.038 14.0 0.0 0.059 13.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_27 PF13463.6 gi|344211782|ref|YP_004796102.1| - 0.044 14.3 0.1 0.083 13.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|344211782|ref|YP_004796102.1| - 0.046 13.6 0.1 0.11 12.4 0.0 1.7 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain DUF3369 PF11849.8 gi|344211782|ref|YP_004796102.1| - 0.058 13.6 0.0 0.086 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3369) TetR_C_24 PF17932.1 gi|344211782|ref|YP_004796102.1| - 0.059 13.6 0.4 0.086 13.1 0.4 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain CTP_transf_like PF01467.26 gi|344211783|ref|YP_004796103.1| - 4.4e-12 46.4 0.0 5.7e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|344211783|ref|YP_004796103.1| - 0.0024 17.8 0.1 0.022 14.6 0.1 2.0 2 0 0 2 2 2 1 FAD synthetase TFIIB PF00382.19 gi|344211784|ref|YP_004796104.1| - 7e-07 29.2 0.3 1.2e-06 28.5 0.3 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.6 gi|344211784|ref|YP_004796104.1| - 0.00022 21.3 0.2 0.00037 20.6 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|344211784|ref|YP_004796104.1| - 0.0043 16.4 0.2 0.0063 15.9 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.6 gi|344211784|ref|YP_004796104.1| - 0.0044 16.8 0.4 0.0073 16.1 0.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|344211784|ref|YP_004796104.1| - 0.0072 16.1 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|344211784|ref|YP_004796104.1| - 0.0085 15.6 0.1 0.014 14.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|344211784|ref|YP_004796104.1| - 0.018 15.0 0.1 0.033 14.2 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_43 PF09904.9 gi|344211784|ref|YP_004796104.1| - 0.03 14.2 0.0 0.043 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix KORA PF16509.5 gi|344211784|ref|YP_004796104.1| - 0.037 14.3 0.2 0.054 13.8 0.2 1.4 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_36 PF13730.6 gi|344211784|ref|YP_004796104.1| - 0.064 13.2 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|344211784|ref|YP_004796104.1| - 0.086 12.7 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_19 PF12844.7 gi|344211786|ref|YP_004796106.1| - 0.00012 22.0 0.1 0.0002 21.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|344211786|ref|YP_004796106.1| - 0.001 19.4 1.0 0.0015 18.9 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|344211786|ref|YP_004796106.1| - 0.017 15.2 0.1 0.026 14.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix Acyl-CoA_dh_1 PF00441.24 gi|344211787|ref|YP_004796107.1| - 2.2e-57 193.5 4.0 3.6e-57 192.8 4.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|344211787|ref|YP_004796107.1| - 1e-30 106.8 5.6 1e-30 106.8 5.6 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344211787|ref|YP_004796107.1| - 2.6e-28 99.0 0.5 9e-28 97.2 0.0 2.1 2 1 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344211787|ref|YP_004796107.1| - 2.4e-27 95.0 0.0 4.9e-27 94.0 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.8 gi|344211787|ref|YP_004796107.1| - 0.077 12.7 0.0 0.3 10.7 0.0 1.8 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.6 gi|344211788|ref|YP_004796108.1| - 1e-16 61.5 0.0 2.4e-15 57.1 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344211788|ref|YP_004796108.1| - 6.1e-11 43.0 3.4 6.8e-09 36.3 0.2 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344211788|ref|YP_004796108.1| - 3.5e-07 30.2 0.2 9.2e-07 28.8 0.1 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|344211788|ref|YP_004796108.1| - 0.00013 22.5 2.1 0.00083 19.8 2.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pantoate_transf PF02548.15 gi|344211790|ref|YP_004796110.1| - 5.3e-100 334.1 0.3 6.5e-100 333.8 0.3 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|344211790|ref|YP_004796110.1| - 4.2e-07 29.7 3.1 1.3e-06 28.1 0.9 2.1 1 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase KORA PF16509.5 gi|344211790|ref|YP_004796110.1| - 0.099 12.9 0.0 1.2 9.5 0.0 2.3 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor COX2 PF00116.20 gi|344211791|ref|YP_004796111.1| - 1e-15 57.6 1.0 8.7e-15 54.7 0.0 2.1 1 1 1 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|344211791|ref|YP_004796111.1| - 4.1e-09 36.4 0.1 6.8e-09 35.7 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|344211791|ref|YP_004796111.1| - 8.3e-06 25.9 0.0 1.6e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.20 gi|344211792|ref|YP_004796112.1| - 4.6e-135 450.8 57.7 4.6e-135 450.8 57.7 2.3 2 1 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF4383 PF14325.6 gi|344211793|ref|YP_004796113.1| - 0.024 14.9 0.8 0.13 12.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4383) COX3 PF00510.18 gi|344211794|ref|YP_004796114.1| - 2.5e-36 125.8 7.2 3.9e-36 125.2 7.2 1.3 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III DUF420 PF04238.12 gi|344211794|ref|YP_004796114.1| - 0.34 11.2 9.7 0.085 13.1 6.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF420) Radical_SAM PF04055.21 gi|344211795|ref|YP_004796115.1| - 5e-16 59.5 1.6 5.5e-14 52.9 0.1 2.3 2 0 0 2 2 2 2 Radical SAM superfamily BATS PF06968.13 gi|344211795|ref|YP_004796115.1| - 2.1e-15 56.6 0.0 3.9e-15 55.8 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Pterin_bind PF00809.22 gi|344211795|ref|YP_004796115.1| - 0.0093 15.7 0.2 0.032 13.9 0.2 2.2 1 1 1 2 2 2 1 Pterin binding enzyme GCH_III PF05165.12 gi|344211795|ref|YP_004796115.1| - 0.041 13.1 0.0 0.98 8.6 0.0 2.2 2 0 0 2 2 2 0 GTP cyclohydrolase III ELFV_dehydrog PF00208.21 gi|344211796|ref|YP_004796116.1| - 0.0014 18.4 0.0 0.0028 17.4 0.0 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|344211796|ref|YP_004796116.1| - 0.018 15.8 1.7 1 10.2 0.1 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Aminotran_1_2 PF00155.21 gi|344211797|ref|YP_004796117.1| - 1.3e-57 195.6 0.0 1.5e-57 195.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|344211797|ref|YP_004796117.1| - 0.0012 17.4 0.0 0.002 16.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|344211797|ref|YP_004796117.1| - 0.085 12.2 0.8 0.29 10.4 0.8 1.7 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AAA_26 PF13500.6 gi|344211798|ref|YP_004796118.1| - 1.3e-35 123.1 0.0 1.6e-35 122.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344211798|ref|YP_004796118.1| - 3.3e-08 33.7 0.0 6.8e-08 32.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|344211798|ref|YP_004796118.1| - 5.7e-05 22.5 0.9 0.00022 20.6 0.2 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain AAA_26 PF13500.6 gi|344211799|ref|YP_004796119.1| - 1.7e-33 116.1 0.0 1.1e-32 113.5 0.0 2.3 2 1 2 4 4 4 1 AAA domain DRTGG PF07085.12 gi|344211799|ref|YP_004796119.1| - 1.1e-30 105.5 0.4 4.4e-30 103.6 0.1 2.0 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|344211799|ref|YP_004796119.1| - 0.0012 18.9 0.0 0.0018 18.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.16 gi|344211799|ref|YP_004796119.1| - 0.0015 18.6 0.0 0.0033 17.4 0.0 1.6 2 0 0 2 2 2 1 HPr Serine kinase N terminus PucR PF07905.11 gi|344211799|ref|YP_004796119.1| - 0.0072 16.6 0.2 0.44 10.8 0.0 2.6 1 1 1 2 2 2 1 Purine catabolism regulatory protein-like family IstB_IS21 PF01695.17 gi|344211799|ref|YP_004796119.1| - 0.084 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein MobB PF03205.14 gi|344211799|ref|YP_004796119.1| - 0.16 11.9 0.1 20 5.1 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-grasp_5 PF13549.6 gi|344211800|ref|YP_004796120.1| - 1.6e-72 243.6 0.3 2.6e-72 242.9 0.3 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|344211800|ref|YP_004796120.1| - 1.2e-51 174.2 0.2 3e-51 172.8 0.2 1.8 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|344211800|ref|YP_004796120.1| - 8.2e-23 81.1 1.5 1.6e-22 80.2 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|344211800|ref|YP_004796120.1| - 2.2e-13 50.7 1.8 6.8e-13 49.1 1.8 1.9 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|344211800|ref|YP_004796120.1| - 0.00015 21.4 0.0 0.00039 20.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.22 gi|344211800|ref|YP_004796120.1| - 0.0045 17.8 1.1 0.049 14.5 0.1 2.6 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF4089 PF13318.6 gi|344211800|ref|YP_004796120.1| - 0.046 14.2 0.3 3.5 8.2 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4089) Zincin_1 PF06262.11 gi|344211801|ref|YP_004796121.1| - 0.0068 16.5 0.1 0.011 15.8 0.1 1.5 1 1 0 1 1 1 1 Zincin-like metallopeptidase Ferritin PF00210.24 gi|344211802|ref|YP_004796122.1| - 3.6e-33 114.5 4.7 4.3e-33 114.2 4.7 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|344211802|ref|YP_004796122.1| - 0.00076 19.8 1.4 0.02 15.2 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Syntaxin-6_N PF09177.11 gi|344211804|ref|YP_004796124.1| - 0.0069 16.9 4.6 3 8.5 0.1 3.6 2 1 1 3 3 3 2 Syntaxin 6, N-terminal CorA PF01544.18 gi|344211804|ref|YP_004796124.1| - 0.014 14.7 0.5 0.014 14.7 0.5 1.6 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Com_YlbF PF06133.11 gi|344211804|ref|YP_004796124.1| - 0.02 15.5 0.1 0.067 13.8 0.0 1.8 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA TPR_14 PF13428.6 gi|344211804|ref|YP_004796124.1| - 0.05 14.4 0.9 2.7 9.0 0.3 2.6 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|344211804|ref|YP_004796124.1| - 0.079 13.1 1.4 0.21 11.8 1.4 1.7 1 1 0 1 1 1 0 Tetratricopeptide repeat DUF4164 PF13747.6 gi|344211804|ref|YP_004796124.1| - 0.091 13.1 4.9 0.85 9.9 2.5 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) TPR_11 PF13414.6 gi|344211804|ref|YP_004796124.1| - 0.097 12.4 0.2 0.21 11.3 0.0 1.5 2 0 0 2 2 2 0 TPR repeat MDMPI_N PF11716.8 gi|344211804|ref|YP_004796124.1| - 0.14 12.8 3.8 0.13 13.0 2.3 1.7 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain OB_aCoA_assoc PF01796.17 gi|344211807|ref|YP_004796127.1| - 8.8e-05 22.4 2.0 0.00022 21.2 2.0 1.6 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|344211807|ref|YP_004796127.1| - 0.03 14.2 2.3 0.05 13.5 2.3 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|344211808|ref|YP_004796128.1| - 1e-58 198.8 0.0 1.4e-58 198.3 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|344211808|ref|YP_004796128.1| - 1.1e-08 34.7 0.3 3.2e-08 33.2 0.3 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|344211808|ref|YP_004796128.1| - 0.0021 18.1 0.2 5.8 7.0 0.0 3.6 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|344211808|ref|YP_004796128.1| - 0.012 15.2 2.0 0.28 10.7 0.2 2.8 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain UpxZ PF06603.11 gi|344211809|ref|YP_004796129.1| - 0.036 14.3 0.0 0.058 13.7 0.0 1.2 1 0 0 1 1 1 0 UpxZ family of transcription anti-terminator antagonists Peripla_BP_2 PF01497.18 gi|344211810|ref|YP_004796130.1| - 4.8e-19 68.9 0.2 9.7e-19 67.9 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein TF_Zn_Ribbon PF08271.12 gi|344211811|ref|YP_004796131.1| - 0.0021 17.6 0.2 0.0036 16.8 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TackOD1 PF18551.1 gi|344211811|ref|YP_004796131.1| - 0.01 15.5 0.1 0.011 15.4 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_4 PF13717.6 gi|344211811|ref|YP_004796131.1| - 0.02 14.8 0.1 6 6.9 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|344211811|ref|YP_004796131.1| - 0.022 15.1 0.1 0.027 14.9 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar TusA PF01206.17 gi|344211811|ref|YP_004796131.1| - 0.032 14.0 0.1 0.04 13.7 0.1 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA Rubredoxin_2 PF18073.1 gi|344211811|ref|YP_004796131.1| - 0.074 12.8 2.7 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain ADK_lid PF05191.14 gi|344211811|ref|YP_004796131.1| - 0.088 12.8 0.6 0.14 12.2 0.6 1.3 1 1 0 1 1 1 0 Adenylate kinase, active site lid HypA PF01155.19 gi|344211811|ref|YP_004796131.1| - 0.089 12.8 0.2 0.1 12.6 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Stc1 PF12898.7 gi|344211811|ref|YP_004796131.1| - 0.1 13.1 1.0 0.23 12.1 1.0 1.6 1 1 0 1 1 1 0 Stc1 domain zf-Mss51 PF13824.6 gi|344211811|ref|YP_004796131.1| - 0.11 12.6 1.0 0.78 9.9 1.6 1.9 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Elf1 PF05129.13 gi|344211811|ref|YP_004796131.1| - 0.13 12.3 0.7 0.81 9.8 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like PhnA_Zn_Ribbon PF08274.12 gi|344211811|ref|YP_004796131.1| - 0.25 11.3 3.5 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.6 gi|344211811|ref|YP_004796131.1| - 0.34 11.4 1.0 31 5.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.10 gi|344211811|ref|YP_004796131.1| - 0.92 9.7 4.7 8.2 6.6 0.6 2.4 1 1 2 3 3 3 0 Zinc ribbon domain OAD_gamma PF04277.13 gi|344211812|ref|YP_004796132.1| - 0.22 12.2 2.1 0.4 11.3 2.1 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.22 gi|344211813|ref|YP_004796133.1| - 4.5e-196 652.3 0.0 5.1e-196 652.1 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|344211813|ref|YP_004796133.1| - 0.0024 17.4 0.0 0.007 15.9 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) adh_short_C2 PF13561.6 gi|344211814|ref|YP_004796134.1| - 6.5e-63 212.4 1.2 7.8e-63 212.2 1.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344211814|ref|YP_004796134.1| - 7.9e-58 195.1 0.8 9.4e-58 194.9 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344211814|ref|YP_004796134.1| - 4.6e-20 72.3 0.2 6.3e-20 71.8 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344211814|ref|YP_004796134.1| - 0.009 15.5 0.2 0.013 15.0 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RGP PF03214.13 gi|344211815|ref|YP_004796135.1| - 2.8e-17 62.9 0.0 3.3e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_8 PF13416.6 gi|344211816|ref|YP_004796136.1| - 3.5e-14 53.3 0.1 4.9e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|344211816|ref|YP_004796136.1| - 1.4e-13 50.8 0.0 1.9e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344211816|ref|YP_004796136.1| - 9.2e-06 25.8 0.0 4.2e-05 23.7 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|344211816|ref|YP_004796136.1| - 5.2e-05 23.1 0.8 0.00012 22.0 0.8 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344211816|ref|YP_004796136.1| - 0.006 16.4 5.0 0.006 16.4 5.0 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|344211817|ref|YP_004796137.1| - 1.5e-24 86.7 33.7 1.4e-14 54.3 13.2 3.7 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|344211818|ref|YP_004796138.1| - 3.7e-35 121.4 0.0 6.6e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|344211818|ref|YP_004796138.1| - 2.9e-09 37.0 0.5 9.2e-09 35.4 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|344211818|ref|YP_004796138.1| - 2e-06 27.8 0.0 0.0079 16.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|344211818|ref|YP_004796138.1| - 0.00044 20.2 0.0 0.00069 19.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|344211818|ref|YP_004796138.1| - 0.0032 17.9 0.1 0.033 14.6 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|344211818|ref|YP_004796138.1| - 0.0043 17.5 0.3 0.011 16.1 0.2 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211818|ref|YP_004796138.1| - 0.0053 17.0 0.9 0.028 14.7 0.9 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344211818|ref|YP_004796138.1| - 0.024 14.5 0.0 0.057 13.3 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|344211818|ref|YP_004796138.1| - 0.03 14.6 0.0 0.27 11.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|344211818|ref|YP_004796138.1| - 0.033 14.4 0.3 0.44 10.8 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.20 gi|344211818|ref|YP_004796138.1| - 0.046 12.9 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|344211818|ref|YP_004796138.1| - 0.13 12.4 1.0 2.3 8.4 1.0 2.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|344211818|ref|YP_004796138.1| - 0.15 11.4 0.1 1.2 8.5 0.0 2.0 1 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI PMT_2 PF13231.6 gi|344211819|ref|YP_004796139.1| - 7.5e-07 29.5 9.4 7.5e-07 29.5 9.4 1.9 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|344211819|ref|YP_004796139.1| - 0.71 9.4 9.2 0.18 11.4 4.9 1.9 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Gluconate_2-dh3 PF13618.6 gi|344211820|ref|YP_004796140.1| - 2.8e-09 37.3 0.0 3.9e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 HisKA_4TM PF16926.5 gi|344211820|ref|YP_004796140.1| - 0.01 15.4 0.2 0.019 14.6 0.2 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase Glycos_transf_2 PF00535.26 gi|344211821|ref|YP_004796141.1| - 1.7e-21 76.7 0.0 2.2e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211821|ref|YP_004796141.1| - 4e-05 23.6 0.6 6e-05 23.0 0.6 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF1724 PF08350.10 gi|344211822|ref|YP_004796142.1| - 8.8e-12 45.0 0.0 1.5e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.19 gi|344211822|ref|YP_004796142.1| - 0.0022 17.8 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|344211822|ref|YP_004796142.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|344211822|ref|YP_004796142.1| - 0.024 14.6 0.0 0.044 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Ribosomal_S19e PF01090.19 gi|344211822|ref|YP_004796142.1| - 0.037 13.7 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e DUF505 PF04458.12 gi|344211822|ref|YP_004796142.1| - 0.065 11.6 0.0 0.089 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_20 PF12840.7 gi|344211822|ref|YP_004796142.1| - 0.14 12.2 0.0 1 9.5 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HemN_C PF06969.16 gi|344211822|ref|YP_004796142.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain Regulator_TrmB PF11495.8 gi|344211823|ref|YP_004796143.1| - 7.8e-69 231.4 0.2 1.1e-68 230.9 0.2 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|344211823|ref|YP_004796143.1| - 1.6e-20 72.7 0.0 3.3e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344211823|ref|YP_004796143.1| - 4.9e-05 23.3 0.0 0.00011 22.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344211823|ref|YP_004796143.1| - 0.0003 20.6 0.0 0.00065 19.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344211823|ref|YP_004796143.1| - 0.00031 20.5 0.1 0.002 17.9 0.0 2.3 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344211823|ref|YP_004796143.1| - 0.00049 19.8 0.0 0.0013 18.5 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|344211823|ref|YP_004796143.1| - 0.012 16.0 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|344211823|ref|YP_004796143.1| - 0.016 15.3 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_24 PF13412.6 gi|344211823|ref|YP_004796143.1| - 0.062 12.9 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|344211823|ref|YP_004796143.1| - 0.063 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_9 PF08221.11 gi|344211823|ref|YP_004796143.1| - 0.085 13.0 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain SBP_bac_8 PF13416.6 gi|344211824|ref|YP_004796144.1| - 7.9e-24 84.9 7.8 1.2e-23 84.3 7.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344211824|ref|YP_004796144.1| - 5.9e-16 59.3 7.6 8.4e-16 58.8 7.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344211824|ref|YP_004796144.1| - 0.072 13.0 7.1 0.16 11.9 7.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glu_dehyd_C PF16912.5 gi|344211825|ref|YP_004796145.1| - 1e-97 325.8 0.0 1.3e-97 325.4 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|344211825|ref|YP_004796145.1| - 3.3e-10 39.8 0.0 5e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|344211825|ref|YP_004796145.1| - 0.00041 20.2 0.1 0.0011 18.8 0.1 1.7 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|344211825|ref|YP_004796145.1| - 0.052 13.5 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.22 gi|344211826|ref|YP_004796146.1| - 5.7e-26 91.7 0.5 1.1e-25 90.8 0.2 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|344211826|ref|YP_004796146.1| - 2.7e-07 30.6 0.1 7.1e-07 29.2 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|344211826|ref|YP_004796146.1| - 0.00012 22.6 0.1 0.00026 21.5 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|344211826|ref|YP_004796146.1| - 0.0025 18.4 0.5 0.0044 17.7 0.5 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.12 gi|344211826|ref|YP_004796146.1| - 0.006 16.2 0.1 0.0094 15.5 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|344211826|ref|YP_004796146.1| - 0.011 16.4 0.2 0.02 15.6 0.2 1.4 1 0 0 1 1 1 0 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|344211826|ref|YP_004796146.1| - 0.038 13.4 0.1 0.12 11.7 0.0 1.8 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|344211826|ref|YP_004796146.1| - 0.045 13.9 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|344211826|ref|YP_004796146.1| - 0.08 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain G6PD_N PF00479.22 gi|344211826|ref|YP_004796146.1| - 0.091 13.4 0.0 0.75 10.4 0.0 2.0 2 0 0 2 2 2 0 Glucose-6-phosphate dehydrogenase, NAD binding domain HemY_N PF07219.13 gi|344211827|ref|YP_004796147.1| - 0.041 14.1 0.0 0.047 13.9 0.0 1.1 1 0 0 1 1 1 0 HemY protein N-terminus LMBR1 PF04791.16 gi|344211827|ref|YP_004796147.1| - 0.12 11.3 0.0 0.12 11.2 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein stn_TNFRSF12A PF12191.8 gi|344211827|ref|YP_004796147.1| - 0.2 11.9 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain ABC_tran PF00005.27 gi|344211828|ref|YP_004796148.1| - 3.6e-33 115.0 0.0 6.1e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|344211828|ref|YP_004796148.1| - 1e-12 48.6 0.1 2.8e-12 47.3 0.1 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|344211828|ref|YP_004796148.1| - 3e-06 27.3 0.0 0.038 13.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211828|ref|YP_004796148.1| - 3.6e-05 23.3 0.3 0.025 14.0 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344211828|ref|YP_004796148.1| - 0.0003 20.6 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain TOBE_2 PF08402.10 gi|344211828|ref|YP_004796148.1| - 0.00091 19.3 0.0 0.0068 16.6 0.0 2.5 2 1 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|344211828|ref|YP_004796148.1| - 0.001 19.6 0.0 0.0032 18.0 0.0 1.9 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA_29 PF13555.6 gi|344211828|ref|YP_004796148.1| - 0.0028 17.4 0.1 0.0075 16.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|344211828|ref|YP_004796148.1| - 0.0042 17.0 0.0 0.0063 16.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RNA_helicase PF00910.22 gi|344211828|ref|YP_004796148.1| - 0.012 16.0 0.0 0.033 14.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|344211828|ref|YP_004796148.1| - 0.014 15.8 0.3 0.22 12.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|344211828|ref|YP_004796148.1| - 0.017 15.4 0.3 0.041 14.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|344211828|ref|YP_004796148.1| - 0.018 15.0 0.0 0.047 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|344211828|ref|YP_004796148.1| - 0.025 14.5 0.0 0.056 13.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|344211828|ref|YP_004796148.1| - 0.041 14.4 0.1 0.082 13.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|344211828|ref|YP_004796148.1| - 0.059 13.6 0.2 0.15 12.3 0.2 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|344211828|ref|YP_004796148.1| - 0.071 13.5 0.1 0.17 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|344211828|ref|YP_004796148.1| - 0.11 13.0 0.7 1.3 9.6 0.3 2.7 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|344211828|ref|YP_004796148.1| - 0.15 12.2 0.1 0.45 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|344211828|ref|YP_004796148.1| - 0.17 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|344211828|ref|YP_004796148.1| - 0.23 11.2 0.3 1.3 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|344211829|ref|YP_004796149.1| - 1.2e-10 41.4 22.9 1.2e-10 41.4 22.9 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344211830|ref|YP_004796150.1| - 9.1e-14 51.6 20.1 9.1e-14 51.6 20.1 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|344211831|ref|YP_004796151.1| - 3.8e-14 53.4 1.3 1.1e-13 51.8 1.3 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344211831|ref|YP_004796151.1| - 0.005 16.6 6.8 0.005 16.6 6.8 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Regulator_TrmB PF11495.8 gi|344211832|ref|YP_004796152.1| - 2.4e-78 262.6 0.4 2.9e-78 262.3 0.4 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|344211832|ref|YP_004796152.1| - 5.6e-15 55.0 0.0 1.2e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344211832|ref|YP_004796152.1| - 0.0015 18.4 0.0 0.0037 17.1 0.0 1.7 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|344211832|ref|YP_004796152.1| - 0.0073 16.2 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|344211832|ref|YP_004796152.1| - 0.11 13.0 0.0 0.38 11.3 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|344211832|ref|YP_004796152.1| - 0.12 12.7 0.0 0.32 11.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Aldo_ket_red PF00248.21 gi|344211833|ref|YP_004796153.1| - 1.9e-79 267.0 0.0 2.3e-79 266.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family zf-RRN7 PF11781.8 gi|344211834|ref|YP_004796154.1| - 0.048 13.4 0.7 2.4 7.9 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 FdhE PF04216.12 gi|344211834|ref|YP_004796154.1| - 0.05 13.5 0.1 0.076 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc-ribbons_6 PF07191.12 gi|344211834|ref|YP_004796154.1| - 0.078 13.0 2.1 0.15 12.1 2.1 1.4 1 0 0 1 1 1 0 zinc-ribbons TackOD1 PF18551.1 gi|344211834|ref|YP_004796154.1| - 0.08 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF3039 PF11238.8 gi|344211834|ref|YP_004796154.1| - 0.099 12.4 0.6 0.099 12.4 0.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) TerY_C PF15616.6 gi|344211834|ref|YP_004796154.1| - 0.12 12.5 0.8 0.2 11.8 0.8 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain Zn-ribbon_8 PF09723.10 gi|344211834|ref|YP_004796154.1| - 0.14 12.3 3.9 12 6.1 1.7 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Rad50_zn_hook PF04423.14 gi|344211834|ref|YP_004796154.1| - 0.18 11.6 1.8 2.4 8.0 0.1 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-TFIIB PF13453.6 gi|344211834|ref|YP_004796154.1| - 0.23 10.8 3.7 7.2 6.0 1.0 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|344211834|ref|YP_004796154.1| - 2.4 7.7 11.4 0.064 12.7 1.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|344211834|ref|YP_004796154.1| - 3.7 7.7 8.2 0.3 11.1 0.8 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Pribosyltran PF00156.27 gi|344211835|ref|YP_004796155.1| - 2.6e-15 56.3 0.0 4.5e-15 55.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|344211835|ref|YP_004796155.1| - 0.0018 18.0 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.6 gi|344211835|ref|YP_004796155.1| - 0.0069 15.9 0.3 0.029 13.8 0.3 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.15 gi|344211835|ref|YP_004796155.1| - 0.019 15.0 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|344211835|ref|YP_004796155.1| - 0.035 14.0 0.1 0.1 12.6 0.1 1.8 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.16 gi|344211835|ref|YP_004796155.1| - 0.048 13.2 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|344211835|ref|YP_004796155.1| - 0.071 12.9 0.3 0.53 10.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|344211835|ref|YP_004796155.1| - 0.076 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPRTase PF14681.6 gi|344211835|ref|YP_004796155.1| - 0.13 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_Crp_2 PF13545.6 gi|344211835|ref|YP_004796155.1| - 0.16 12.0 0.0 0.42 10.6 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Thiolase_N PF00108.23 gi|344211837|ref|YP_004796157.1| - 1.4e-29 103.3 1.5 2.1e-29 102.7 1.5 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|344211837|ref|YP_004796157.1| - 2e-12 47.3 6.1 1.8e-10 40.8 4.0 3.0 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|344211837|ref|YP_004796157.1| - 3.9e-08 33.0 0.1 1.1e-07 31.5 0.1 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|344211837|ref|YP_004796157.1| - 0.00085 19.1 3.1 0.029 14.2 0.7 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|344211837|ref|YP_004796157.1| - 0.0044 17.0 2.1 0.5 10.4 0.0 3.6 3 1 0 4 4 4 1 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|344211838|ref|YP_004796158.1| - 8.5e-10 38.5 2.0 1.3e-09 37.9 2.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|344211838|ref|YP_004796158.1| - 0.0094 15.8 2.2 0.015 15.2 2.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.7 gi|344211839|ref|YP_004796159.1| - 7.7e-20 72.4 6.7 1.1e-19 72.0 6.7 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344211839|ref|YP_004796159.1| - 1e-12 48.2 0.1 2.2e-12 47.2 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344211839|ref|YP_004796159.1| - 2.6e-07 30.2 0.0 3.9e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 MeaB PF03308.16 gi|344211840|ref|YP_004796160.1| - 1.1e-90 303.3 2.1 1.3e-90 303.0 2.1 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|344211840|ref|YP_004796160.1| - 1.3e-06 28.1 1.3 2e-05 24.3 1.3 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|344211840|ref|YP_004796160.1| - 3.8e-05 23.4 0.6 0.00011 21.9 0.6 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|344211840|ref|YP_004796160.1| - 4.4e-05 23.4 0.1 0.00017 21.5 0.1 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.15 gi|344211840|ref|YP_004796160.1| - 4.6e-05 23.4 0.3 0.00016 21.6 0.1 2.0 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.6 gi|344211840|ref|YP_004796160.1| - 9.4e-05 22.2 0.1 0.00023 20.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344211840|ref|YP_004796160.1| - 0.00032 21.0 0.2 0.0045 17.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.27 gi|344211840|ref|YP_004796160.1| - 0.0011 18.5 0.0 0.73 9.3 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|344211840|ref|YP_004796160.1| - 0.0014 19.0 5.6 0.072 13.5 5.6 2.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|344211840|ref|YP_004796160.1| - 0.0027 17.4 0.2 0.0072 16.0 0.2 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|344211840|ref|YP_004796160.1| - 0.003 16.9 0.1 0.0055 16.0 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.27 gi|344211840|ref|YP_004796160.1| - 0.0049 17.4 0.0 0.0088 16.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter NB-ARC PF00931.22 gi|344211840|ref|YP_004796160.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.6 gi|344211840|ref|YP_004796160.1| - 0.013 16.0 0.3 0.17 12.4 0.1 2.4 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|344211840|ref|YP_004796160.1| - 0.018 15.0 0.0 0.19 11.6 0.0 2.3 3 0 0 3 3 2 0 RsgA GTPase MobB PF03205.14 gi|344211840|ref|YP_004796160.1| - 0.026 14.4 0.0 0.091 12.7 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.14 gi|344211840|ref|YP_004796160.1| - 0.028 13.7 0.0 0.048 12.9 0.0 1.4 1 0 0 1 1 1 0 KAP family P-loop domain AAA_19 PF13245.6 gi|344211840|ref|YP_004796160.1| - 0.03 14.6 0.5 0.12 12.7 0.1 2.0 2 1 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|344211840|ref|YP_004796160.1| - 0.043 13.9 0.0 0.11 12.6 0.0 1.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|344211840|ref|YP_004796160.1| - 0.05 13.5 0.2 0.22 11.5 0.1 2.1 2 0 0 2 2 2 0 NACHT domain B12-binding_2 PF02607.17 gi|344211840|ref|YP_004796160.1| - 0.05 14.0 0.2 0.22 12.0 0.1 2.2 2 1 0 2 2 1 0 B12 binding domain AAA_17 PF13207.6 gi|344211840|ref|YP_004796160.1| - 0.07 13.6 0.4 0.31 11.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain PRK PF00485.18 gi|344211840|ref|YP_004796160.1| - 0.074 12.8 0.2 0.15 11.8 0.2 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.29 gi|344211840|ref|YP_004796160.1| - 0.096 13.1 0.1 1 9.8 0.0 2.5 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|344211840|ref|YP_004796160.1| - 0.11 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_33 PF13671.6 gi|344211840|ref|YP_004796160.1| - 0.14 12.3 0.1 0.32 11.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|344211840|ref|YP_004796160.1| - 0.15 11.2 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|344211840|ref|YP_004796160.1| - 0.17 12.1 2.0 0.24 11.6 0.2 2.1 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|344211840|ref|YP_004796160.1| - 0.19 10.9 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase ParA PF10609.9 gi|344211840|ref|YP_004796160.1| - 0.51 9.7 3.5 1.9 7.9 3.5 1.9 1 1 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase B12-binding PF02310.19 gi|344211841|ref|YP_004796161.1| - 4.5e-23 81.6 0.8 5.3e-23 81.3 0.8 1.1 1 0 0 1 1 1 1 B12 binding domain GATase1_like PF07090.11 gi|344211841|ref|YP_004796161.1| - 0.16 11.4 0.0 0.49 9.8 0.0 1.7 1 1 0 1 1 1 0 Putative glutamine amidotransferase Glycos_transf_2 PF00535.26 gi|344211842|ref|YP_004796162.1| - 8.2e-26 90.8 0.3 1e-25 90.5 0.3 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211842|ref|YP_004796162.1| - 2.2e-09 37.6 0.6 2.6e-09 37.3 0.6 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|344211842|ref|YP_004796162.1| - 7.8e-06 26.3 0.2 6.5e-05 23.4 0.0 2.1 1 1 0 2 2 2 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|344211842|ref|YP_004796162.1| - 0.023 15.1 0.2 0.04 14.3 0.2 1.4 1 1 0 1 1 1 0 MobA-like NTP transferase domain DUF2304 PF10066.9 gi|344211843|ref|YP_004796163.1| - 7.8e-17 61.4 5.7 9e-17 61.2 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) DUF2206 PF09971.9 gi|344211843|ref|YP_004796163.1| - 0.0069 15.2 1.5 0.0072 15.1 1.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2206) CPP1-like PF11833.8 gi|344211843|ref|YP_004796163.1| - 4 7.1 6.8 4.9 6.8 6.8 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF3473 PF11959.8 gi|344211844|ref|YP_004796164.1| - 6.5e-26 90.9 0.0 9.7e-26 90.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.21 gi|344211844|ref|YP_004796164.1| - 1.4e-22 79.9 0.0 2.3e-22 79.2 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.15 gi|344211844|ref|YP_004796164.1| - 0.039 13.2 0.0 0.054 12.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 LPG_synthase_TM PF03706.13 gi|344211845|ref|YP_004796165.1| - 4.8e-32 111.7 44.9 5.9e-32 111.4 44.9 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region PMT_2 PF13231.6 gi|344211846|ref|YP_004796166.1| - 3.9e-12 46.7 13.3 3.9e-12 46.7 13.3 3.1 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|344211846|ref|YP_004796166.1| - 1e-06 28.5 10.6 2.9e-06 27.1 10.6 1.8 1 1 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF4131 PF13567.6 gi|344211846|ref|YP_004796166.1| - 0.22 11.1 0.0 0.22 11.1 0.0 5.2 3 2 1 4 4 4 0 Domain of unknown function (DUF4131) Glycos_transf_2 PF00535.26 gi|344211847|ref|YP_004796167.1| - 3.8e-20 72.4 0.0 5e-20 72.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211847|ref|YP_004796167.1| - 9.1e-11 42.1 0.9 7.4e-10 39.1 0.9 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|344211847|ref|YP_004796167.1| - 1.9e-07 31.2 0.3 3.2e-07 30.5 0.3 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|344211847|ref|YP_004796167.1| - 2.3e-05 23.9 0.0 4.8e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|344211847|ref|YP_004796167.1| - 0.0002 20.9 0.0 0.11 12.0 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|344211847|ref|YP_004796167.1| - 0.0006 20.2 0.1 0.00065 20.1 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain MFS_1 PF07690.16 gi|344211848|ref|YP_004796168.1| - 9.6e-28 97.1 58.8 6.8e-22 77.9 23.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2236 PF09995.9 gi|344211848|ref|YP_004796168.1| - 0.11 12.6 0.0 0.11 12.6 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2236) LolA_like PF17131.4 gi|344211849|ref|YP_004796169.1| - 0.05 13.3 0.2 0.054 13.2 0.2 1.1 1 0 0 1 1 1 0 Outer membrane lipoprotein-sorting protein DUF3491 PF11996.8 gi|344211850|ref|YP_004796170.1| - 0.002 16.0 0.0 0.0025 15.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3491) DUF3693 PF12472.8 gi|344211850|ref|YP_004796170.1| - 0.54 9.9 2.5 0.97 9.1 0.3 2.1 1 1 1 2 2 2 0 Phage related protein DUF4129 PF13559.6 gi|344211852|ref|YP_004796172.1| - 1.2e-06 28.6 3.1 1.2e-06 28.6 3.1 3.5 4 0 0 4 4 4 1 Domain of unknown function (DUF4129) DUF4198 PF10670.9 gi|344211852|ref|YP_004796172.1| - 0.0024 18.3 4.8 0.28 11.5 0.3 3.2 2 1 1 3 3 3 2 Domain of unknown function (DUF4198) CarbopepD_reg_2 PF13715.6 gi|344211852|ref|YP_004796172.1| - 0.057 13.4 0.6 2.1 8.4 0.0 3.2 3 0 0 3 3 3 0 CarboxypepD_reg-like domain MetallophosN PF16371.5 gi|344211852|ref|YP_004796172.1| - 0.38 11.1 1.6 0.88 9.9 0.6 2.1 2 0 0 2 2 2 0 N terminal of Calcineurin-like phosphoesterase CarboxypepD_reg PF13620.6 gi|344211852|ref|YP_004796172.1| - 3.7 7.9 34.2 0.43 10.9 2.4 5.6 4 2 1 5 5 5 0 Carboxypeptidase regulatory-like domain DUF58 PF01882.18 gi|344211854|ref|YP_004796174.1| - 8.4e-18 64.4 0.4 2.4e-17 63.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|344211854|ref|YP_004796174.1| - 2.8e-09 37.2 0.6 2.8e-09 37.2 0.6 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|344211854|ref|YP_004796174.1| - 2.1e-05 24.7 1.4 3.3e-05 24.1 0.1 2.0 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|344211854|ref|YP_004796174.1| - 3.7e-05 23.2 0.0 8.6e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|344211854|ref|YP_004796174.1| - 0.016 15.5 0.0 0.033 14.4 0.0 1.5 1 0 0 1 1 1 0 CARDB AAA_3 PF07726.11 gi|344211856|ref|YP_004796176.1| - 5.1e-65 217.2 0.1 8.2e-65 216.6 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|344211856|ref|YP_004796176.1| - 1.9e-15 57.1 0.0 5.3e-15 55.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|344211856|ref|YP_004796176.1| - 2e-13 50.0 2.2 4.5e-13 48.8 2.2 1.7 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|344211856|ref|YP_004796176.1| - 4.8e-07 30.3 0.0 1.6e-06 28.6 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|344211856|ref|YP_004796176.1| - 1.4e-05 24.9 0.0 0.00013 21.7 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|344211856|ref|YP_004796176.1| - 0.0001 21.5 0.0 0.00016 20.8 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|344211856|ref|YP_004796176.1| - 0.00015 21.5 0.0 0.0023 17.7 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|344211856|ref|YP_004796176.1| - 0.007 15.8 0.0 3.4 7.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|344211856|ref|YP_004796176.1| - 0.014 16.0 0.0 0.026 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2237 PF09996.9 gi|344211857|ref|YP_004796177.1| - 1.9e-49 166.4 0.0 2.2e-49 166.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) AAA_12 PF13087.6 gi|344211858|ref|YP_004796178.1| - 3.4e-41 141.1 0.0 5.2e-41 140.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|344211858|ref|YP_004796178.1| - 9.2e-38 130.5 1.5 1.1e-18 67.9 0.7 2.6 2 1 1 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|344211858|ref|YP_004796178.1| - 2.1e-19 70.0 3.2 2.1e-19 70.0 3.2 2.6 3 1 0 3 3 3 1 AAA domain Dna2 PF08696.11 gi|344211858|ref|YP_004796178.1| - 9.4e-17 61.5 0.0 5e-15 55.9 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_19 PF13245.6 gi|344211858|ref|YP_004796178.1| - 3.2e-14 53.5 0.7 4.1e-13 49.9 0.3 2.7 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|344211858|ref|YP_004796178.1| - 9.7e-12 45.3 0.1 2.6e-11 43.9 0.0 1.7 2 0 0 2 2 1 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|344211858|ref|YP_004796178.1| - 1e-07 32.0 0.1 0.032 14.0 0.0 3.5 4 0 0 4 4 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|344211858|ref|YP_004796178.1| - 1.6e-06 27.9 0.0 2.4e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.9 gi|344211858|ref|YP_004796178.1| - 3.4e-05 23.3 0.2 0.00017 21.0 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.6 gi|344211858|ref|YP_004796178.1| - 0.00015 21.5 0.1 0.00083 19.1 0.0 2.4 2 0 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_16 PF13191.6 gi|344211858|ref|YP_004796178.1| - 0.00027 21.4 0.4 0.00098 19.5 0.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain Helicase_RecD PF05127.14 gi|344211858|ref|YP_004796178.1| - 0.0003 20.7 0.0 0.00072 19.5 0.0 1.7 1 0 0 1 1 1 1 Helicase AAA_22 PF13401.6 gi|344211858|ref|YP_004796178.1| - 0.00033 20.9 0.0 0.0011 19.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.14 gi|344211858|ref|YP_004796178.1| - 0.00095 18.4 0.0 0.05 12.8 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase ResIII PF04851.15 gi|344211858|ref|YP_004796178.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SRP54 PF00448.22 gi|344211858|ref|YP_004796178.1| - 0.013 15.2 0.1 0.17 11.5 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|344211858|ref|YP_004796178.1| - 0.015 14.9 0.0 0.058 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|344211858|ref|YP_004796178.1| - 0.021 15.3 0.2 0.068 13.6 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|344211858|ref|YP_004796178.1| - 0.032 14.0 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|344211858|ref|YP_004796178.1| - 0.036 13.4 0.0 0.09 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TrwB_AAD_bind PF10412.9 gi|344211858|ref|YP_004796178.1| - 0.044 12.7 0.0 0.074 12.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 gi|344211858|ref|YP_004796178.1| - 0.047 13.8 0.0 0.16 12.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|344211858|ref|YP_004796178.1| - 0.064 12.7 0.1 0.21 11.0 0.1 1.9 1 1 0 1 1 1 0 PhoH-like protein T2SSE PF00437.20 gi|344211858|ref|YP_004796178.1| - 0.074 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.23 gi|344211858|ref|YP_004796178.1| - 0.082 13.0 0.1 0.21 11.6 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.17 gi|344211858|ref|YP_004796178.1| - 0.091 12.5 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.14 gi|344211858|ref|YP_004796178.1| - 0.1 12.6 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) bPH_2 PF03703.14 gi|344211859|ref|YP_004796179.1| - 3.9e-51 171.2 3.4 3.5e-18 65.6 0.1 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|344211859|ref|YP_004796179.1| - 0.002 18.1 0.0 8 6.6 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain bPH_2 PF03703.14 gi|344211860|ref|YP_004796180.1| - 5e-16 58.7 0.2 7e-16 58.2 0.2 1.2 1 0 0 1 1 1 1 Bacterial PH domain TAT_signal PF10518.9 gi|344211861|ref|YP_004796181.1| - 0.04 13.8 4.6 0.088 12.7 4.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF5061 PF16587.5 gi|344211861|ref|YP_004796181.1| - 0.094 12.8 0.1 0.34 11.0 0.1 1.8 1 1 0 1 1 1 0 17 kDa common-antigen outer membrane protein DUF4690 PF15756.5 gi|344211861|ref|YP_004796181.1| - 1.2 9.8 5.0 1.1 9.9 4.1 1.5 1 1 0 1 1 1 0 Small Novel Rich in Cartilage DEAD_assoc PF08494.11 gi|344211862|ref|YP_004796182.1| - 5e-51 173.2 0.3 1.1e-50 172.1 0.3 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|344211862|ref|YP_004796182.1| - 3.8e-32 111.4 0.0 4.8e-30 104.6 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|344211862|ref|YP_004796182.1| - 9.2e-20 71.0 0.1 3.2e-18 66.1 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|344211862|ref|YP_004796182.1| - 2.6e-10 40.6 0.0 1.4e-09 38.2 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|344211862|ref|YP_004796182.1| - 0.0031 17.8 0.1 0.019 15.2 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|344211862|ref|YP_004796182.1| - 0.0046 17.3 0.1 0.014 15.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain DHDPS PF00701.22 gi|344211863|ref|YP_004796183.1| - 4.2e-58 196.3 0.0 4.6e-58 196.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF348 PF03990.14 gi|344211863|ref|YP_004796183.1| - 0.6 9.9 0.0 0.6 9.9 0.0 3.2 4 0 0 4 4 4 0 G5-linked-Ubiquitin-like domain HTH_20 PF12840.7 gi|344211864|ref|YP_004796184.1| - 1.5e-13 50.6 0.0 2.8e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344211864|ref|YP_004796184.1| - 3.8e-09 35.9 0.0 6.8e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344211864|ref|YP_004796184.1| - 9.8e-08 31.8 0.0 1.9e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344211864|ref|YP_004796184.1| - 2e-07 30.8 0.0 4e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344211864|ref|YP_004796184.1| - 0.00046 20.1 0.0 0.00076 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|344211864|ref|YP_004796184.1| - 0.0014 19.1 0.0 0.0046 17.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_42 PF06224.12 gi|344211864|ref|YP_004796184.1| - 0.0017 18.0 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|344211864|ref|YP_004796184.1| - 0.0025 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|344211864|ref|YP_004796184.1| - 0.011 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_45 PF14947.6 gi|344211864|ref|YP_004796184.1| - 0.029 14.3 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.9 gi|344211864|ref|YP_004796184.1| - 0.035 14.4 0.0 0.064 13.6 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Sigma70_r3 PF04539.16 gi|344211864|ref|YP_004796184.1| - 0.045 13.9 0.0 0.13 12.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 TrmB PF01978.19 gi|344211864|ref|YP_004796184.1| - 0.072 13.0 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|344211864|ref|YP_004796184.1| - 0.15 12.0 0.3 0.6 10.1 0.3 2.0 1 1 0 1 1 1 0 Beta-lactamase associated winged helix domain Methyltransf_25 PF13649.6 gi|344211865|ref|YP_004796185.1| - 5.3e-17 62.3 0.0 1.2e-16 61.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344211865|ref|YP_004796185.1| - 1.3e-15 57.5 0.0 1.8e-15 57.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344211865|ref|YP_004796185.1| - 1.1e-12 48.4 0.1 3.2e-12 46.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344211865|ref|YP_004796185.1| - 1.7e-11 44.7 0.0 3e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344211865|ref|YP_004796185.1| - 8e-10 38.4 0.1 1.3e-09 37.7 0.1 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|344211865|ref|YP_004796185.1| - 1.2e-06 28.5 0.0 1.9e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344211865|ref|YP_004796185.1| - 0.0004 20.0 0.0 0.0007 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|344211865|ref|YP_004796185.1| - 0.0054 16.2 0.0 0.0072 15.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|344211865|ref|YP_004796185.1| - 0.0076 16.2 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|344211865|ref|YP_004796185.1| - 0.0098 15.2 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|344211865|ref|YP_004796185.1| - 0.016 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|344211865|ref|YP_004796185.1| - 0.018 14.8 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.12 gi|344211865|ref|YP_004796185.1| - 0.042 12.9 0.0 0.06 12.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_4 PF02390.17 gi|344211865|ref|YP_004796185.1| - 0.075 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.11 gi|344211865|ref|YP_004796185.1| - 0.17 10.8 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Lactamase_B_2 PF12706.7 gi|344211866|ref|YP_004796186.1| - 2.4e-16 59.9 1.7 3.4e-16 59.4 1.7 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|344211866|ref|YP_004796186.1| - 1.9e-13 50.9 2.9 2.4e-13 50.5 2.9 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|344211866|ref|YP_004796186.1| - 0.00032 20.6 0.0 0.00052 19.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|344211866|ref|YP_004796186.1| - 0.01 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PDEase_II PF02112.15 gi|344211866|ref|YP_004796186.1| - 0.21 10.7 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II HATPase_c PF02518.26 gi|344211867|ref|YP_004796187.1| - 1.7e-14 54.2 0.1 3.3e-14 53.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|344211867|ref|YP_004796187.1| - 2.5e-14 53.7 0.4 5.6e-14 52.6 0.4 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|344211867|ref|YP_004796187.1| - 7.1e-06 26.4 0.6 2.4e-05 24.7 0.6 1.9 1 1 0 1 1 1 1 GAF domain HisKA_4TM PF16926.5 gi|344211867|ref|YP_004796187.1| - 0.00033 20.2 0.2 0.0006 19.4 0.2 1.5 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|344211867|ref|YP_004796187.1| - 0.00037 20.1 0.0 0.0014 18.3 0.0 2.0 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HisKA PF00512.25 gi|344211867|ref|YP_004796187.1| - 0.00044 20.2 0.3 0.0068 16.4 0.0 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain YnfE PF17452.2 gi|344211867|ref|YP_004796187.1| - 0.032 14.5 1.0 0.24 11.7 0.2 2.5 2 1 0 2 2 2 0 Uncharacterized YnfE-like Syntaxin_2 PF14523.6 gi|344211867|ref|YP_004796187.1| - 0.13 12.6 0.0 0.34 11.3 0.0 1.7 2 0 0 2 2 2 0 Syntaxin-like protein TPR_7 PF13176.6 gi|344211867|ref|YP_004796187.1| - 0.13 12.3 0.6 0.48 10.6 0.4 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat HAD_2 PF13419.6 gi|344211868|ref|YP_004796188.1| - 6e-18 65.6 0.0 7.1e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344211868|ref|YP_004796188.1| - 1.2e-07 31.7 0.0 2.7e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|344211868|ref|YP_004796188.1| - 2.4e-07 31.3 0.0 1.5e-06 28.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_20 PF12840.7 gi|344211869|ref|YP_004796189.1| - 2e-09 37.4 0.2 4.4e-09 36.3 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344211869|ref|YP_004796189.1| - 4.9e-06 26.3 0.0 7.8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344211869|ref|YP_004796189.1| - 0.00027 20.7 0.3 0.00084 19.1 0.3 1.9 1 1 1 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344211869|ref|YP_004796189.1| - 0.0017 18.2 0.1 0.0033 17.3 0.1 1.4 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|344211869|ref|YP_004796189.1| - 0.0022 18.1 0.2 0.0047 17.0 0.2 1.5 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 gi|344211869|ref|YP_004796189.1| - 0.003 17.1 0.1 0.0057 16.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|344211869|ref|YP_004796189.1| - 0.0038 17.1 0.1 0.009 15.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|344211869|ref|YP_004796189.1| - 0.006 16.4 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|344211869|ref|YP_004796189.1| - 0.022 14.7 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|344211869|ref|YP_004796189.1| - 0.057 13.4 0.1 0.1 12.6 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|344211869|ref|YP_004796189.1| - 0.089 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|344211869|ref|YP_004796189.1| - 0.11 12.8 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|344211869|ref|YP_004796189.1| - 0.21 11.6 0.0 0.37 10.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix eRF1_1 PF03463.15 gi|344211870|ref|YP_004796190.1| - 2.2e-26 92.4 0.1 3.6e-26 91.7 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|344211870|ref|YP_004796190.1| - 7.8e-22 77.9 1.7 1.7e-21 76.8 0.0 2.3 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|344211870|ref|YP_004796190.1| - 1.7e-08 34.9 0.2 9.9e-07 29.1 0.2 2.4 1 1 0 1 1 1 1 eRF1 domain 2 DUF4013 PF13197.6 gi|344211871|ref|YP_004796191.1| - 2e-32 112.3 17.1 2e-32 112.3 17.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Bac_export_2 PF01312.19 gi|344211871|ref|YP_004796191.1| - 1.8 7.7 5.4 4.1 6.5 5.4 1.6 1 1 0 1 1 1 0 FlhB HrpN YscU SpaS Family AIRS_C PF02769.22 gi|344211872|ref|YP_004796192.1| - 6.5e-25 88.1 1.7 1.2e-24 87.2 1.7 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|344211872|ref|YP_004796192.1| - 4.5e-08 33.6 0.5 4.5e-08 33.6 0.5 1.9 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain FbpA PF05833.11 gi|344211873|ref|YP_004796193.1| - 2.4e-79 267.3 0.0 3.4e-79 266.7 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|344211873|ref|YP_004796193.1| - 1.2e-23 83.9 0.0 1.9e-23 83.2 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|344211873|ref|YP_004796193.1| - 0.00027 21.1 0.0 0.00083 19.5 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain CENP-Q PF13094.6 gi|344211873|ref|YP_004796193.1| - 8.1 6.6 10.3 0.48 10.6 0.6 2.4 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Amino_oxidase PF01593.24 gi|344211874|ref|YP_004796194.1| - 1.6e-17 63.9 1.5 7.9e-10 38.6 0.1 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|344211874|ref|YP_004796194.1| - 1e-14 54.5 1.0 2.2e-14 53.4 1.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344211874|ref|YP_004796194.1| - 3.6e-06 26.8 0.6 5e-06 26.3 0.6 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|344211874|ref|YP_004796194.1| - 0.0016 18.4 1.3 0.42 10.6 0.1 2.7 3 0 0 3 3 3 2 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|344211874|ref|YP_004796194.1| - 0.0052 15.9 5.3 0.0072 15.5 2.9 2.1 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344211874|ref|YP_004796194.1| - 0.0064 15.8 2.3 0.014 14.6 0.6 2.0 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344211874|ref|YP_004796194.1| - 0.013 15.2 0.1 0.61 9.7 0.2 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 gi|344211874|ref|YP_004796194.1| - 0.035 12.8 0.2 0.061 12.0 0.2 1.4 1 0 0 1 1 1 0 HI0933-like protein Thi4 PF01946.17 gi|344211874|ref|YP_004796194.1| - 0.088 12.0 0.3 0.13 11.5 0.3 1.2 1 0 0 1 1 1 0 Thi4 family Pyr_redox PF00070.27 gi|344211874|ref|YP_004796194.1| - 0.092 13.3 0.4 0.24 12.0 0.4 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344211874|ref|YP_004796194.1| - 0.15 11.1 1.8 0.35 9.9 0.9 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A CARDB PF07705.11 gi|344211876|ref|YP_004796196.1| - 2.7e-25 88.6 74.0 2.5e-06 27.7 2.8 10.6 8 3 2 11 11 11 8 CARDB DUF756 PF05506.12 gi|344211876|ref|YP_004796196.1| - 2.9e-16 60.1 26.2 0.0019 19.1 0.1 9.3 7 2 1 9 9 9 4 Domain of unknown function (DUF756) A2M PF00207.22 gi|344211876|ref|YP_004796196.1| - 0.00043 20.1 4.8 1.1 9.2 0.0 5.9 6 0 0 6 6 6 1 Alpha-2-macroglobulin family YebF PF13995.6 gi|344211876|ref|YP_004796196.1| - 0.0036 17.3 0.5 0.13 12.3 0.0 3.1 3 0 0 3 3 3 1 YebF-like protein Cupredoxin_1 PF13473.6 gi|344211876|ref|YP_004796196.1| - 0.0051 16.9 9.2 22 5.2 0.1 7.1 6 2 0 7 7 7 0 Cupredoxin-like domain DUF1573 PF07610.11 gi|344211876|ref|YP_004796196.1| - 0.0091 16.0 17.5 7.7 6.6 0.1 7.6 8 1 0 8 8 8 1 Protein of unknown function (DUF1573) fn3_6 PF17766.1 gi|344211876|ref|YP_004796196.1| - 0.92 9.7 19.6 1.5 9.1 0.4 6.3 5 2 2 7 7 7 0 Fibronectin type-III domain 4HBT PF03061.22 gi|344211876|ref|YP_004796196.1| - 1.7 9.1 8.3 11 6.4 0.2 4.7 4 0 0 4 4 4 0 Thioesterase superfamily Hamartin PF04388.12 gi|344211876|ref|YP_004796196.1| - 3.7 6.1 5.3 5.8 5.5 5.3 1.2 1 0 0 1 1 1 0 Hamartin protein PKD_3 PF16820.5 gi|344211876|ref|YP_004796196.1| - 6.8 6.5 9.7 48 3.8 0.1 5.5 6 0 0 6 6 6 0 PKD-like domain BsuPI PF12690.7 gi|344211876|ref|YP_004796196.1| - 7 6.8 19.4 16 5.6 0.2 7.3 6 2 2 8 8 8 0 Intracellular proteinase inhibitor Ig_3 PF13927.6 gi|344211876|ref|YP_004796196.1| - 7.4 7.3 13.2 1.5e+02 3.0 0.0 7.3 5 2 2 7 7 7 0 Immunoglobulin domain Radical_SAM PF04055.21 gi|344211877|ref|YP_004796197.1| - 2.4e-26 93.1 0.1 9.6e-26 91.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|344211877|ref|YP_004796197.1| - 2.9e-24 84.9 0.0 5.3e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|344211877|ref|YP_004796197.1| - 3.9e-10 40.0 0.1 8.5e-10 38.9 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344211877|ref|YP_004796197.1| - 3.5e-05 23.8 0.4 0.00013 21.9 0.4 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211877|ref|YP_004796197.1| - 0.014 15.8 0.1 0.028 14.8 0.1 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Peptidase_C39_2 PF13529.6 gi|344211877|ref|YP_004796197.1| - 0.12 12.9 0.0 0.32 11.5 0.0 1.6 1 1 0 1 1 1 0 Peptidase_C39 like family MCPsignal PF00015.21 gi|344211879|ref|YP_004796199.1| - 1.9e-38 132.0 28.5 1.9e-38 132.0 28.5 4.7 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344211879|ref|YP_004796199.1| - 0.00015 22.1 0.3 0.00015 22.1 0.3 3.9 4 0 0 4 4 4 1 HAMP domain DUF948 PF06103.11 gi|344211879|ref|YP_004796199.1| - 0.0077 16.5 46.1 0.15 12.3 8.2 6.2 3 2 1 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF4131 PF13567.6 gi|344211879|ref|YP_004796199.1| - 0.009 15.7 1.1 0.35 10.5 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4131) Phage_holin_3_6 PF07332.11 gi|344211879|ref|YP_004796199.1| - 0.038 14.0 0.2 0.038 14.0 0.2 4.3 3 1 1 4 4 4 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2140 PF09911.9 gi|344211879|ref|YP_004796199.1| - 0.044 13.3 0.0 0.14 11.7 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2140) Syntaxin-6_N PF09177.11 gi|344211879|ref|YP_004796199.1| - 0.21 12.2 42.6 1.4 9.5 7.2 5.4 3 2 2 5 5 5 0 Syntaxin 6, N-terminal DUF4381 PF14316.6 gi|344211879|ref|YP_004796199.1| - 0.4 10.9 5.9 0.056 13.7 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Seryl_tRNA_N PF02403.22 gi|344211879|ref|YP_004796199.1| - 0.7 10.1 49.4 1.2 9.4 0.5 5.6 1 1 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain OATP PF03137.20 gi|344211879|ref|YP_004796199.1| - 1.2 7.3 3.4 1.5 7.0 2.5 1.6 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Laminin_II PF06009.12 gi|344211879|ref|YP_004796199.1| - 2.4 8.2 50.6 0.078 13.0 3.7 5.2 3 2 2 5 5 5 0 Laminin Domain II DUF2935 PF11155.8 gi|344211879|ref|YP_004796199.1| - 3.5 8.0 11.2 1.5 9.1 0.0 3.7 3 2 0 3 3 3 0 Domain of unknown function (DUF2935) Spc7 PF08317.11 gi|344211879|ref|YP_004796199.1| - 7.4 5.3 56.2 0.067 12.1 12.0 3.9 1 1 3 4 4 4 0 Spc7 kinetochore protein RseA_C PF03873.13 gi|344211879|ref|YP_004796199.1| - 8.9 6.6 6.9 0.41 10.9 0.3 2.3 2 0 0 2 2 1 0 Anti sigma-E protein RseA, C-terminal domain Cupin_2 PF07883.11 gi|344211880|ref|YP_004796200.1| - 2e-13 49.8 0.1 3.1e-13 49.2 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.7 gi|344211880|ref|YP_004796200.1| - 0.0039 16.9 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|344211880|ref|YP_004796200.1| - 0.0094 15.6 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|344211880|ref|YP_004796200.1| - 0.02 14.8 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|344211880|ref|YP_004796200.1| - 0.027 14.7 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase DUF4437 PF14499.6 gi|344211880|ref|YP_004796200.1| - 0.067 12.3 0.0 0.091 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4437) tRNA_anti-codon PF01336.25 gi|344211881|ref|YP_004796201.1| - 2.3e-11 43.5 0.1 6.5e-11 42.1 0.1 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|344211881|ref|YP_004796201.1| - 4e-07 30.3 0.3 1.8e-06 28.2 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|344211881|ref|YP_004796201.1| - 0.00018 21.6 0.0 0.0006 20.0 0.0 1.9 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Apt1 PF10351.9 gi|344211881|ref|YP_004796201.1| - 1.4 7.7 4.6 2.1 7.1 4.6 1.3 1 0 0 1 1 1 0 Golgi-body localisation protein domain RecJ_OB PF17768.1 gi|344211882|ref|YP_004796202.1| - 0.016 15.5 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 RecJ OB domain Yip1 PF04893.17 gi|344211883|ref|YP_004796203.1| - 3.3e-09 36.7 10.7 4.5e-09 36.3 10.7 1.2 1 0 0 1 1 1 1 Yip1 domain FMN_red PF03358.15 gi|344211884|ref|YP_004796204.1| - 6.5e-33 113.7 0.0 7.8e-33 113.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|344211884|ref|YP_004796204.1| - 2.6e-07 30.5 0.0 4e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold B12-binding PF02310.19 gi|344211886|ref|YP_004796206.1| - 1.2e-16 60.8 0.2 1.6e-16 60.4 0.2 1.2 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|344211886|ref|YP_004796206.1| - 0.0017 18.3 0.0 0.022 14.7 0.0 2.1 1 1 1 2 2 2 1 Zinc-binding dehydrogenase ACT PF01842.25 gi|344211886|ref|YP_004796206.1| - 0.25 11.1 1.6 5.7 6.8 0.1 2.5 2 1 0 2 2 2 0 ACT domain Acetyltransf_1 PF00583.25 gi|344211887|ref|YP_004796207.1| - 8.7e-15 55.0 0.0 1e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344211887|ref|YP_004796207.1| - 1.1e-14 54.4 0.0 1.6e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344211887|ref|YP_004796207.1| - 1.9e-12 47.4 0.0 2.7e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344211887|ref|YP_004796207.1| - 4.8e-08 33.3 0.0 8e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344211887|ref|YP_004796207.1| - 9.3e-07 28.7 0.0 1.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|344211887|ref|YP_004796207.1| - 8e-06 26.6 0.0 9.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|344211887|ref|YP_004796207.1| - 0.001 19.2 1.4 0.0016 18.6 1.0 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344211887|ref|YP_004796207.1| - 0.037 14.1 0.1 0.2 11.7 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Na_Ca_ex PF01699.24 gi|344211888|ref|YP_004796208.1| - 1e-34 119.7 30.9 3.9e-18 65.9 13.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Tetraspanin PF00335.20 gi|344211888|ref|YP_004796208.1| - 1.1 8.9 0.0 1.1 8.9 0.0 3.8 2 2 2 4 4 4 0 Tetraspanin family HhH-GPD PF00730.25 gi|344211889|ref|YP_004796209.1| - 1.2e-16 61.0 0.0 2.3e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|344211889|ref|YP_004796209.1| - 5e-06 26.1 0.0 1.1e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HATPase_c PF02518.26 gi|344211890|ref|YP_004796210.1| - 1.7e-14 54.2 0.0 3.8e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211890|ref|YP_004796210.1| - 9.3e-14 51.2 0.7 9.3e-14 51.2 0.7 2.0 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HAMP PF00672.25 gi|344211890|ref|YP_004796210.1| - 3.5e-13 49.7 1.0 3.5e-13 49.7 1.0 2.1 2 0 0 2 2 2 1 HAMP domain HATPase_c_3 PF13589.6 gi|344211890|ref|YP_004796210.1| - 0.0019 18.1 0.0 0.0052 16.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Exonuc_VII_L PF02601.15 gi|344211890|ref|YP_004796210.1| - 0.0025 17.5 0.3 0.0048 16.5 0.1 1.7 2 0 0 2 2 2 1 Exonuclease VII, large subunit Spc29 PF17082.5 gi|344211890|ref|YP_004796210.1| - 0.0098 15.8 1.8 0.015 15.1 1.8 1.3 1 0 0 1 1 1 1 Spindle Pole Component 29 GAS PF13851.6 gi|344211890|ref|YP_004796210.1| - 0.01 15.2 1.4 0.062 12.6 1.6 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding CEP209_CC5 PF16574.5 gi|344211890|ref|YP_004796210.1| - 0.011 16.0 0.7 0.021 15.0 0.7 1.4 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 Tropomyosin PF00261.20 gi|344211890|ref|YP_004796210.1| - 0.058 12.8 3.4 0.69 9.2 0.9 2.1 2 0 0 2 2 2 0 Tropomyosin DUF3450 PF11932.8 gi|344211890|ref|YP_004796210.1| - 0.067 12.5 0.5 0.14 11.4 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Spc7 PF08317.11 gi|344211890|ref|YP_004796210.1| - 0.097 11.5 1.9 0.15 10.9 1.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4200 PF13863.6 gi|344211890|ref|YP_004796210.1| - 0.32 11.4 3.6 0.79 10.1 3.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) KfrA_N PF11740.8 gi|344211890|ref|YP_004796210.1| - 1.4 9.6 6.8 1.6 9.5 3.7 2.6 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term CorA PF01544.18 gi|344211890|ref|YP_004796210.1| - 1.6 8.0 4.9 3 7.1 4.9 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Hemerythrin PF01814.23 gi|344211890|ref|YP_004796210.1| - 10 6.8 8.9 43 4.7 8.9 2.1 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain DUF3695 PF12494.8 gi|344211891|ref|YP_004796211.1| - 0.11 12.3 0.6 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3695) DUF4010 PF13194.6 gi|344211892|ref|YP_004796212.1| - 1.1e-51 175.6 25.9 1.1e-51 175.6 25.9 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|344211892|ref|YP_004796212.1| - 8.1e-23 81.1 13.3 8.1e-23 81.1 13.3 4.1 2 1 2 4 4 4 1 MgtC family HisKA_7TM PF16927.5 gi|344211893|ref|YP_004796213.1| - 1.7e-36 126.3 7.2 2.4e-36 125.9 7.2 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS PF00989.25 gi|344211893|ref|YP_004796213.1| - 8.3e-20 70.9 0.0 5.2e-12 45.8 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|344211893|ref|YP_004796213.1| - 1e-18 67.6 1.5 1.4e-08 34.9 0.1 3.0 2 1 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|344211893|ref|YP_004796213.1| - 2.3e-17 63.5 0.0 4.6e-17 62.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|344211893|ref|YP_004796213.1| - 5.1e-13 49.1 0.0 1.4e-12 47.8 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344211893|ref|YP_004796213.1| - 2.3e-12 46.6 0.1 4.1e-05 23.5 0.0 3.0 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|344211893|ref|YP_004796213.1| - 1.1e-11 44.6 0.6 2.7e-11 43.3 0.6 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344211893|ref|YP_004796213.1| - 2.7e-11 43.7 0.0 3.3e-05 24.1 0.0 3.3 2 1 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|344211893|ref|YP_004796213.1| - 0.0019 18.1 0.1 0.0087 16.0 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|344211893|ref|YP_004796213.1| - 0.011 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 PAS domain PAS_7 PF12860.7 gi|344211893|ref|YP_004796213.1| - 0.065 13.4 0.1 2.3 8.4 0.1 3.0 2 2 0 2 2 2 0 PAS fold PAP2_3 PF14378.6 gi|344211893|ref|YP_004796213.1| - 0.099 12.3 1.0 0.12 12.0 0.1 1.6 2 0 0 2 2 2 0 PAP2 superfamily Spc7 PF08317.11 gi|344211893|ref|YP_004796213.1| - 0.17 10.8 0.9 0.26 10.1 0.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein PadR PF03551.14 gi|344211894|ref|YP_004796214.1| - 6.2e-18 64.5 1.0 7.4e-18 64.3 1.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|344211894|ref|YP_004796214.1| - 0.0022 17.8 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|344211894|ref|YP_004796214.1| - 0.0083 16.1 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|344211894|ref|YP_004796214.1| - 0.0091 15.9 0.1 1.7 8.6 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_27 PF13463.6 gi|344211894|ref|YP_004796214.1| - 0.014 15.9 0.2 0.018 15.5 0.2 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|344211894|ref|YP_004796214.1| - 0.11 12.7 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|344211894|ref|YP_004796214.1| - 0.17 11.6 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HypA PF01155.19 gi|344211896|ref|YP_004796216.1| - 0.0037 17.3 0.6 0.0069 16.4 0.6 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|344211896|ref|YP_004796216.1| - 0.0081 16.2 0.3 0.016 15.2 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|344211896|ref|YP_004796216.1| - 0.049 13.8 0.9 0.13 12.4 0.9 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.11 gi|344211896|ref|YP_004796216.1| - 0.051 13.6 0.5 0.18 11.8 0.5 1.9 2 0 0 2 2 2 0 Zinc-ribbon containing domain TF_Zn_Ribbon PF08271.12 gi|344211896|ref|YP_004796216.1| - 0.056 13.0 1.8 0.12 11.9 1.6 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding ArfGap PF01412.18 gi|344211896|ref|YP_004796216.1| - 0.081 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf zf-IS66 PF13005.7 gi|344211896|ref|YP_004796216.1| - 0.086 13.3 2.1 1.3 9.5 0.2 2.7 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.10 gi|344211896|ref|YP_004796216.1| - 0.12 12.2 0.8 7.2 6.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|344211896|ref|YP_004796216.1| - 0.23 11.3 0.6 9.7 6.0 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GATA PF00320.27 gi|344211896|ref|YP_004796216.1| - 0.23 11.1 0.1 0.23 11.1 0.1 2.2 3 0 0 3 3 3 0 GATA zinc finger zf-HYPF PF07503.12 gi|344211896|ref|YP_004796216.1| - 1.2 9.0 5.9 3.7 7.4 3.9 2.7 2 1 0 2 2 2 0 HypF finger TFIIS_C PF01096.18 gi|344211896|ref|YP_004796216.1| - 2.6 8.0 5.4 16 5.5 1.7 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|344211896|ref|YP_004796216.1| - 3.6 7.7 6.8 5.2 7.2 0.2 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 NUDIX PF00293.28 gi|344211897|ref|YP_004796217.1| - 9.2e-13 48.4 0.4 1.1e-12 48.1 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain KH_1 PF00013.29 gi|344211897|ref|YP_004796217.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 KH domain THF_DHG_CYH_C PF02882.19 gi|344211898|ref|YP_004796218.1| - 1.3e-66 222.8 1.7 1.8e-66 222.4 1.7 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|344211898|ref|YP_004796218.1| - 1.5e-36 125.1 0.8 2.5e-36 124.5 0.8 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DUF2057 PF09829.9 gi|344211899|ref|YP_004796219.1| - 0.51 10.5 3.5 51 4.0 4.5 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2057) SHMT PF00464.19 gi|344211900|ref|YP_004796220.1| - 5e-152 506.1 0.0 5.9e-152 505.9 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|344211900|ref|YP_004796220.1| - 7.4e-08 32.0 0.0 1.4e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|344211900|ref|YP_004796220.1| - 0.00019 20.8 0.0 0.022 14.0 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase DUF348 PF03990.14 gi|344211900|ref|YP_004796220.1| - 0.098 12.4 0.3 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain DegT_DnrJ_EryC1 PF01041.17 gi|344211900|ref|YP_004796220.1| - 0.16 11.2 0.4 0.27 10.5 0.4 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CHAT PF12770.7 gi|344211901|ref|YP_004796221.1| - 0.0029 17.1 0.1 0.015 14.8 0.1 2.0 1 1 0 1 1 1 1 CHAT domain T6SS_VasE PF05936.12 gi|344211902|ref|YP_004796222.1| - 0.0081 14.9 0.1 0.033 12.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YcaO PF02624.16 gi|344211903|ref|YP_004796223.1| - 4.9e-50 170.6 7.2 6.4e-50 170.3 7.2 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF63 PF01889.17 gi|344211904|ref|YP_004796224.1| - 4.1e-37 128.8 13.7 8.2e-37 127.9 11.6 2.2 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Phage_Coat_Gp8 PF05371.12 gi|344211904|ref|YP_004796224.1| - 0.015 15.0 0.2 0.046 13.5 0.2 1.8 1 0 0 1 1 1 0 Phage major coat protein, Gp8 Inositol_P PF00459.25 gi|344211905|ref|YP_004796225.1| - 2e-48 165.3 0.2 2.2e-48 165.1 0.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family BMFP PF04380.13 gi|344211905|ref|YP_004796225.1| - 0.21 12.1 1.1 0.53 10.8 1.1 1.7 1 1 0 1 1 1 0 Membrane fusogenic activity DUF5446 PF17522.2 gi|344211906|ref|YP_004796226.1| - 0.0041 17.2 0.2 0.005 17.0 0.2 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5446) Glycos_transf_2 PF00535.26 gi|344211908|ref|YP_004796228.1| - 6.4e-23 81.4 0.0 8.9e-23 80.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344211908|ref|YP_004796228.1| - 3.9e-05 23.7 0.0 5.2e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Metallopep PF12044.8 gi|344211909|ref|YP_004796229.1| - 0.026 13.2 0.0 0.039 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.9 gi|344211909|ref|YP_004796229.1| - 0.028 13.4 0.2 0.036 13.0 0.2 1.3 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_3 PF13582.6 gi|344211909|ref|YP_004796229.1| - 0.033 14.7 0.8 0.12 12.9 0.8 2.0 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|344211909|ref|YP_004796229.1| - 0.049 13.3 1.6 0.091 12.4 1.6 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like PsbR PF04725.12 gi|344211909|ref|YP_004796229.1| - 0.13 12.7 0.3 0.13 12.7 0.3 2.5 3 0 0 3 3 3 0 Photosystem II 10 kDa polypeptide PsbR Binary_toxB PF03495.14 gi|344211909|ref|YP_004796229.1| - 0.33 11.2 3.6 41 4.4 3.6 2.7 1 1 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain DUF58 PF01882.18 gi|344211910|ref|YP_004796230.1| - 1.9e-20 72.9 0.1 4.8e-20 71.6 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 Big_3_5 PF16640.5 gi|344211910|ref|YP_004796230.1| - 6.5 7.0 13.2 1.6 9.0 1.6 2.9 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) MaAIMP_sms PF16951.5 gi|344211911|ref|YP_004796231.1| - 1.8 8.3 0.0 1.8 8.3 0.0 2.8 2 1 1 3 3 3 0 Putative methionine and alanine importer, small subunit AAA_3 PF07726.11 gi|344211913|ref|YP_004796233.1| - 1.1e-60 203.2 0.4 1.7e-60 202.6 0.4 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|344211913|ref|YP_004796233.1| - 2e-21 75.6 0.8 3.8e-21 74.7 0.8 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|344211913|ref|YP_004796233.1| - 5.5e-18 65.3 0.0 6.1e-17 61.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|344211913|ref|YP_004796233.1| - 5.5e-09 35.5 0.0 1.5e-08 34.0 0.0 1.8 1 1 1 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|344211913|ref|YP_004796233.1| - 1.8e-07 31.0 0.1 2.1e-06 27.5 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|344211913|ref|YP_004796233.1| - 4.7e-06 26.1 0.2 0.1 12.0 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|344211913|ref|YP_004796233.1| - 2.2e-05 24.3 0.1 0.00013 21.7 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|344211913|ref|YP_004796233.1| - 4.3e-05 23.9 0.0 0.00011 22.6 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|344211913|ref|YP_004796233.1| - 0.084 13.3 0.4 0.37 11.1 0.3 2.3 1 1 1 2 2 2 0 AAA ATPase domain DUF4350 PF14258.6 gi|344211914|ref|YP_004796234.1| - 1.2e-09 38.4 1.9 2.4e-09 37.5 0.4 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|344211914|ref|YP_004796234.1| - 0.0017 17.9 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.10 gi|344211914|ref|YP_004796234.1| - 0.029 13.9 0.1 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain TrbC PF04956.13 gi|344211915|ref|YP_004796235.1| - 0.33 11.2 3.5 0.27 11.5 1.0 1.8 1 1 1 2 2 2 0 TrbC/VIRB2 family DUF3040 PF11239.8 gi|344211915|ref|YP_004796235.1| - 0.4 11.0 7.6 0.54 10.6 2.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF2530 PF10745.9 gi|344211915|ref|YP_004796235.1| - 1.5 9.1 7.5 0.28 11.4 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) FtsX PF02687.21 gi|344211916|ref|YP_004796236.1| - 1.8e-09 38.0 3.7 1.8e-09 38.0 3.7 4.6 5 1 0 5 5 5 2 FtsX-like permease family CARDB PF07705.11 gi|344211916|ref|YP_004796236.1| - 0.00063 20.0 6.9 0.0013 19.0 2.1 3.2 3 0 0 3 3 3 1 CARDB PMP1_2 PF08114.11 gi|344211916|ref|YP_004796236.1| - 0.43 10.3 2.3 3.2 7.6 2.3 2.6 1 0 0 1 1 1 0 ATPase proteolipid family ChpA-C PF03777.13 gi|344211916|ref|YP_004796236.1| - 3.8 7.5 8.0 21 5.1 1.5 3.1 2 0 0 2 2 2 0 ChpA-C ABC_tran PF00005.27 gi|344211917|ref|YP_004796237.1| - 2.2e-30 105.9 0.0 3.4e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344211917|ref|YP_004796237.1| - 1.2e-05 25.3 0.1 0.09 12.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344211917|ref|YP_004796237.1| - 0.00057 19.4 0.1 0.014 14.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344211917|ref|YP_004796237.1| - 0.0009 18.9 0.1 0.0016 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344211917|ref|YP_004796237.1| - 0.0017 18.8 1.0 0.0032 17.9 1.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344211917|ref|YP_004796237.1| - 0.0086 16.0 0.2 0.016 15.1 0.1 1.5 2 0 0 2 2 2 1 RsgA GTPase TniB PF05621.11 gi|344211917|ref|YP_004796237.1| - 0.055 12.9 0.0 0.88 8.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein SbcCD_C PF13558.6 gi|344211917|ref|YP_004796237.1| - 0.073 13.3 0.1 1.3 9.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|344211917|ref|YP_004796237.1| - 0.08 13.2 0.0 0.72 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|344211917|ref|YP_004796237.1| - 0.11 12.2 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|344211917|ref|YP_004796237.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|344211917|ref|YP_004796237.1| - 0.16 12.1 0.0 0.33 11.0 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|344211917|ref|YP_004796237.1| - 0.17 12.0 0.2 0.58 10.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain YfhO PF09586.10 gi|344211918|ref|YP_004796238.1| - 5.1e-05 21.8 0.3 0.044 12.0 0.9 2.1 1 1 1 2 2 2 2 Bacterial membrane protein YfhO LST1 PF05083.13 gi|344211918|ref|YP_004796238.1| - 0.32 11.3 0.9 1.3 9.3 0.0 2.5 2 0 0 2 2 2 0 LST-1 protein MG4 PF17789.1 gi|344211919|ref|YP_004796239.1| - 0.0017 18.5 0.2 0.0017 18.5 0.2 4.2 4 1 1 5 5 5 1 Macroglobulin domain MG4 DUF4129 PF13559.6 gi|344211919|ref|YP_004796239.1| - 0.0025 18.0 3.0 0.0082 16.4 2.6 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4129) LPP PF04728.13 gi|344211919|ref|YP_004796239.1| - 1.1 9.7 7.6 0.16 12.4 2.4 2.3 2 0 0 2 2 2 0 Lipoprotein leucine-zipper DUF1616 PF07760.11 gi|344211920|ref|YP_004796240.1| - 3.4e-122 407.5 0.2 3.8e-122 407.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4870 PF09685.10 gi|344211920|ref|YP_004796240.1| - 0.24 11.5 0.0 0.24 11.5 0.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4870) YdjM PF04307.14 gi|344211921|ref|YP_004796241.1| - 6.4e-06 25.6 8.4 9.2e-06 25.1 8.4 1.3 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase A2L_zn_ribbon PF08792.10 gi|344211922|ref|YP_004796242.1| - 0.00021 20.9 1.9 0.00027 20.5 1.9 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|344211922|ref|YP_004796242.1| - 0.0046 16.9 1.1 0.0058 16.6 1.1 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|344211922|ref|YP_004796242.1| - 0.007 15.7 1.2 0.17 11.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|344211922|ref|YP_004796242.1| - 0.0088 16.0 0.7 0.014 15.4 0.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|344211922|ref|YP_004796242.1| - 0.013 15.0 2.1 0.018 14.5 2.1 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|344211922|ref|YP_004796242.1| - 0.02 15.1 2.4 0.026 14.7 2.4 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-HIT PF04438.16 gi|344211922|ref|YP_004796242.1| - 0.021 14.7 1.2 1.2 9.1 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF5472 PF17566.2 gi|344211922|ref|YP_004796242.1| - 0.071 13.1 0.1 0.076 13.0 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5472) zf-trcl PF13451.6 gi|344211922|ref|YP_004796242.1| - 0.14 12.1 1.4 2.4 8.1 0.1 2.1 1 1 1 2 2 2 0 Probable zinc-ribbon domain PGF-CTERM PF18204.1 gi|344211923|ref|YP_004796243.1| - 7.5e-06 25.7 3.9 1.9e-05 24.5 3.9 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF309 PF03745.14 gi|344211925|ref|YP_004796245.1| - 6.7e-15 54.5 0.1 1.1e-14 53.9 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.14 gi|344211926|ref|YP_004796246.1| - 2.9e-15 56.1 0.0 3.5e-15 55.9 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|344211926|ref|YP_004796246.1| - 0.011 15.2 0.0 0.015 14.8 0.0 1.1 1 0 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic tRNA_edit PF04073.15 gi|344211927|ref|YP_004796247.1| - 1.6e-31 109.0 0.3 1.9e-31 108.7 0.3 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain DUF4157 PF13699.6 gi|344211927|ref|YP_004796247.1| - 0.19 11.9 2.0 0.77 10.0 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4157) bMG5 PF17972.1 gi|344211929|ref|YP_004796249.1| - 0.037 14.4 0.5 0.11 12.9 0.3 1.8 2 0 0 2 2 2 0 Bacterial Alpha-2-macroglobulin MG5 domain YdjM PF04307.14 gi|344211930|ref|YP_004796250.1| - 5.3e-14 51.9 8.0 6.9e-14 51.5 8.0 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase VAPB_antitox PF02697.14 gi|344211931|ref|YP_004796251.1| - 8.2e-16 58.5 1.2 1.1e-15 58.2 1.2 1.2 1 0 0 1 1 1 1 Putative antitoxin efThoc1 PF11957.8 gi|344211931|ref|YP_004796251.1| - 0.038 12.7 0.0 0.062 12.0 0.0 1.2 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor OrfB_Zn_ribbon PF07282.11 gi|344211932|ref|YP_004796252.1| - 1.4e-19 69.7 0.5 2.4e-19 69.0 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|344211932|ref|YP_004796252.1| - 0.0028 17.6 4.4 0.0049 16.8 4.4 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|344211932|ref|YP_004796252.1| - 0.053 13.6 1.9 0.12 12.5 1.9 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.19 gi|344211932|ref|YP_004796252.1| - 0.13 12.3 0.1 0.32 11.0 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|344211932|ref|YP_004796252.1| - 0.35 10.9 2.8 0.79 9.8 2.8 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain UPF0547 PF10571.9 gi|344211932|ref|YP_004796252.1| - 2.1 8.5 4.1 13 6.0 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Y1_Tnp PF01797.16 gi|344211933|ref|YP_004796253.1| - 1.1e-36 125.6 0.2 1.2e-36 125.4 0.2 1.0 1 0 0 1 1 1 1 Transposase IS200 like AP_endonuc_2 PF01261.24 gi|344211933|ref|YP_004796253.1| - 0.033 13.6 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Cdc6_C PF09079.11 gi|344211934|ref|YP_004796254.1| - 6.6e-17 61.3 0.0 3.4e-16 59.0 0.0 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|344211934|ref|YP_004796254.1| - 2.8e-12 47.4 2.3 5.8e-12 46.3 0.2 2.4 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344211934|ref|YP_004796254.1| - 6.2e-10 39.5 0.0 1.4e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344211934|ref|YP_004796254.1| - 1.1e-06 29.1 0.0 1.1e-05 25.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|344211934|ref|YP_004796254.1| - 0.0012 19.0 0.1 0.0025 17.9 0.0 1.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|344211934|ref|YP_004796254.1| - 0.0035 17.3 0.0 0.0053 16.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.26 gi|344211934|ref|YP_004796254.1| - 0.0069 16.1 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|344211934|ref|YP_004796254.1| - 0.014 16.0 0.1 0.033 14.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_assoc_2 PF16193.5 gi|344211934|ref|YP_004796254.1| - 0.019 15.3 0.1 0.061 13.7 0.1 1.8 1 0 0 1 1 1 0 AAA C-terminal domain ABC_tran PF00005.27 gi|344211934|ref|YP_004796254.1| - 0.066 13.7 0.0 0.17 12.4 0.0 1.7 1 1 0 1 1 1 0 ABC transporter TniB PF05621.11 gi|344211934|ref|YP_004796254.1| - 0.073 12.5 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein PhoH PF02562.16 gi|344211934|ref|YP_004796254.1| - 0.11 11.9 0.0 0.86 9.0 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_32 PF13654.6 gi|344211934|ref|YP_004796254.1| - 0.11 11.2 0.4 0.38 9.5 0.3 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|344211934|ref|YP_004796254.1| - 0.14 12.1 1.0 2.3 8.2 0.4 2.6 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|344211934|ref|YP_004796254.1| - 0.15 12.5 0.1 2.5 8.6 0.0 2.4 1 1 0 2 2 2 0 RNA helicase PCP_red PF08369.10 gi|344211934|ref|YP_004796254.1| - 0.16 12.2 0.1 0.7 10.2 0.1 2.2 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit DEAD PF00270.29 gi|344211934|ref|YP_004796254.1| - 1 9.1 2.8 15 5.3 0.2 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase Glycos_transf_1 PF00534.20 gi|344211935|ref|YP_004796255.1| - 2.5e-31 108.5 0.0 3.2e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211935|ref|YP_004796255.1| - 4.6e-25 88.6 0.0 6.7e-25 88.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344211935|ref|YP_004796255.1| - 4.7e-06 26.7 0.0 1.3e-05 25.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|344211936|ref|YP_004796256.1| - 2.5e-35 121.5 0.0 4.7e-35 120.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211936|ref|YP_004796256.1| - 1.6e-29 103.1 0.0 3e-28 98.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344211936|ref|YP_004796256.1| - 3.8e-23 82.3 0.1 1.1e-22 80.8 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344211936|ref|YP_004796256.1| - 3.4e-17 63.4 0.0 6.9e-17 62.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|344211936|ref|YP_004796256.1| - 5.6e-07 29.7 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|344211936|ref|YP_004796256.1| - 4.9e-05 23.7 0.0 0.00022 21.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3492 PF11997.8 gi|344211936|ref|YP_004796256.1| - 0.053 13.3 0.5 0.72 9.5 0.0 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.11 gi|344211936|ref|YP_004796256.1| - 0.054 13.2 0.2 1.3 8.6 0.0 2.3 1 1 0 2 2 2 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|344211937|ref|YP_004796257.1| - 2.2e-28 98.9 0.0 3.4e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211937|ref|YP_004796257.1| - 6.8e-25 88.0 0.0 1e-24 87.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|344211937|ref|YP_004796257.1| - 0.0043 17.4 0.0 0.011 16.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344211937|ref|YP_004796257.1| - 0.0087 16.1 0.0 0.024 14.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 TNFR_16_TM PF18422.1 gi|344211938|ref|YP_004796258.1| - 2.2 8.3 5.2 0.46 10.5 0.1 2.6 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Polysacc_synt_3 PF13440.6 gi|344211939|ref|YP_004796259.1| - 8.9e-19 67.8 7.2 8.9e-19 67.8 7.2 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|344211939|ref|YP_004796259.1| - 1.6e-18 67.1 14.9 1.6e-18 67.1 14.9 2.4 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|344211939|ref|YP_004796259.1| - 2.6e-18 66.4 15.3 2.6e-18 66.4 15.3 3.5 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|344211939|ref|YP_004796259.1| - 0.00015 20.5 16.9 0.00015 20.5 16.9 2.3 1 1 1 2 2 2 1 Lipid II flippase MurJ B12D PF06522.11 gi|344211939|ref|YP_004796259.1| - 0.11 12.3 0.2 0.37 10.6 0.2 1.9 1 0 0 1 1 1 0 NADH-ubiquinone reductase complex 1 MLRQ subunit Mtc PF03820.17 gi|344211939|ref|YP_004796259.1| - 0.18 10.8 0.1 11 4.9 0.0 2.8 3 0 0 3 3 3 0 Tricarboxylate carrier DUF4260 PF14079.6 gi|344211939|ref|YP_004796259.1| - 0.77 9.7 7.8 1.2 9.1 0.5 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4260) Sulfatase PF00884.23 gi|344211940|ref|YP_004796260.1| - 6.7e-14 52.0 0.8 8.4e-06 25.4 0.1 2.1 2 0 0 2 2 2 2 Sulfatase Phosphodiest PF01663.22 gi|344211940|ref|YP_004796260.1| - 0.0051 16.5 4.8 0.21 11.2 0.6 2.4 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|344211940|ref|YP_004796260.1| - 0.26 9.8 0.0 0.32 9.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_1 PF00534.20 gi|344211941|ref|YP_004796261.1| - 7.2e-26 90.8 0.0 1.1e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211941|ref|YP_004796261.1| - 2.2e-24 86.4 0.0 3.2e-23 82.6 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344211941|ref|YP_004796261.1| - 1e-18 67.9 0.2 1.5e-18 67.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344211941|ref|YP_004796261.1| - 1.8e-12 48.0 0.1 3.3e-12 47.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain RAMPs PF03787.15 gi|344211944|ref|YP_004796264.1| - 0.14 12.2 0.0 0.17 11.9 0.0 1.4 1 1 0 1 1 1 0 RAMP superfamily Glycos_transf_1 PF00534.20 gi|344211947|ref|YP_004796267.1| - 2e-15 56.8 0.0 3e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344211947|ref|YP_004796267.1| - 1.9e-13 51.0 0.0 2.6e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344211947|ref|YP_004796267.1| - 0.0015 18.5 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 PrkA PF06798.12 gi|344211950|ref|YP_004796270.1| - 3.4e-72 243.2 14.0 4.9e-72 242.6 9.7 2.5 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|344211950|ref|YP_004796270.1| - 4.1e-65 220.0 0.0 6.3e-65 219.4 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain PrkA PF06798.12 gi|344211951|ref|YP_004796271.1| - 2.2e-40 138.9 0.0 4.5e-40 137.9 0.0 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|344211951|ref|YP_004796271.1| - 1.8e-18 66.6 0.0 3.5e-15 55.8 0.0 3.0 2 1 0 2 2 2 2 PrkA AAA domain AAA_22 PF13401.6 gi|344211951|ref|YP_004796271.1| - 0.12 12.7 0.0 0.66 10.3 0.0 2.3 1 1 0 1 1 1 0 AAA domain DUF444 PF04285.12 gi|344211952|ref|YP_004796272.1| - 2.2e-130 435.5 1.1 2.5e-130 435.3 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.6 gi|344211952|ref|YP_004796272.1| - 0.11 12.6 0.1 0.58 10.3 0.1 2.1 2 0 0 2 2 2 0 Tautomerase enzyme HTH_17 PF12728.7 gi|344211952|ref|YP_004796272.1| - 0.15 12.2 0.6 1.5 9.1 0.0 2.8 4 0 0 4 4 4 0 Helix-turn-helix domain SpoVR PF04293.13 gi|344211953|ref|YP_004796273.1| - 1.3e-83 281.1 4.8 2.1e-62 211.2 0.1 3.2 3 0 0 3 3 3 3 SpoVR like protein LAGLIDADG_3 PF14528.6 gi|344211953|ref|YP_004796273.1| - 8.3e-21 74.1 1.4 6.8e-13 48.8 0.1 2.9 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|344211953|ref|YP_004796273.1| - 4.4e-10 39.6 0.0 2.1e-09 37.4 0.0 2.2 1 1 0 1 1 1 1 Intein splicing domain LacI PF00356.21 gi|344211953|ref|YP_004796273.1| - 0.0063 16.3 0.1 0.015 15.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family UPF0047 PF01894.17 gi|344211954|ref|YP_004796274.1| - 1e-35 122.3 0.0 1.2e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AMP-binding PF00501.28 gi|344211955|ref|YP_004796275.1| - 8.7e-92 307.9 0.0 1.1e-91 307.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344211955|ref|YP_004796275.1| - 0.053 14.5 0.1 0.29 12.2 0.1 2.2 1 1 1 2 2 2 0 AMP-binding enzyme C-terminal domain DUF2724 PF10893.8 gi|344211956|ref|YP_004796276.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2724) DUF2116 PF09889.9 gi|344211957|ref|YP_004796277.1| - 0.43 10.6 3.4 6.5 6.8 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NTP_transferase PF00483.23 gi|344211958|ref|YP_004796278.1| - 1.7e-39 135.9 0.0 2.6e-39 135.3 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344211958|ref|YP_004796278.1| - 2.8e-16 60.3 0.3 4.3e-16 59.7 0.3 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|344211958|ref|YP_004796278.1| - 2.8e-08 33.2 12.0 0.0017 18.0 0.1 4.6 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|344211958|ref|YP_004796278.1| - 0.0012 18.7 0.0 0.0021 17.9 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|344211958|ref|YP_004796278.1| - 0.014 15.1 6.4 1.4 8.7 0.4 3.9 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|344211958|ref|YP_004796278.1| - 0.027 12.6 0.1 0.037 12.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) GHL10 PF02638.15 gi|344211958|ref|YP_004796278.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase-like 10 Bactofilin PF04519.13 gi|344211958|ref|YP_004796278.1| - 0.14 12.5 1.6 0.28 11.5 1.1 1.8 1 1 0 1 1 1 0 Polymer-forming cytoskeletal DUF4352 PF11611.8 gi|344211959|ref|YP_004796279.1| - 1.5e-09 38.2 0.0 4.5e-07 30.2 0.1 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4352) ATPase_2 PF01637.18 gi|344211960|ref|YP_004796280.1| - 1e-26 94.3 0.0 3.9e-26 92.4 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|344211960|ref|YP_004796280.1| - 4.5e-16 59.1 0.0 9.5e-16 58.1 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|344211960|ref|YP_004796280.1| - 1.4e-05 25.2 0.0 2.5e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344211960|ref|YP_004796280.1| - 3e-05 24.3 0.0 6.5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344211960|ref|YP_004796280.1| - 4.6e-05 23.9 0.0 0.00013 22.4 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|344211960|ref|YP_004796280.1| - 0.00014 21.6 0.0 0.00028 20.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344211960|ref|YP_004796280.1| - 0.00042 20.1 0.2 0.0012 18.6 0.2 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344211960|ref|YP_004796280.1| - 0.00056 19.7 0.0 0.0017 18.2 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344211960|ref|YP_004796280.1| - 0.033 13.7 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344211960|ref|YP_004796280.1| - 0.044 13.7 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344211960|ref|YP_004796280.1| - 0.045 13.8 0.1 0.22 11.6 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344211960|ref|YP_004796280.1| - 0.088 12.8 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RNA12 PF10443.9 gi|344211960|ref|YP_004796280.1| - 0.13 10.9 0.0 1 8.0 0.0 2.0 1 1 0 2 2 2 0 RNA12 protein U62_UL91 PF17442.2 gi|344211960|ref|YP_004796280.1| - 0.17 11.9 0.0 0.61 10.1 0.0 1.9 1 0 0 1 1 1 0 Functional domain of U62 and UL91 proteins 3HCDH_N PF02737.18 gi|344211961|ref|YP_004796281.1| - 4.7e-66 222.1 0.2 7.6e-66 221.4 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|344211961|ref|YP_004796281.1| - 7.3e-62 208.9 0.0 1.1e-61 208.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|344211961|ref|YP_004796281.1| - 1.2e-47 160.5 1.5 5.3e-31 107.1 0.0 3.6 3 0 0 3 3 3 3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|344211961|ref|YP_004796281.1| - 2e-36 126.2 0.2 8.9e-33 114.2 0.1 2.6 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|344211961|ref|YP_004796281.1| - 1.9e-06 28.1 0.3 7.5e-06 26.2 0.3 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|344211961|ref|YP_004796281.1| - 0.00016 21.7 0.0 0.00033 20.7 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|344211961|ref|YP_004796281.1| - 0.002 18.7 3.2 0.018 15.6 3.2 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|344211961|ref|YP_004796281.1| - 0.096 13.3 0.2 0.26 11.9 0.2 1.8 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.24 gi|344211962|ref|YP_004796282.1| - 2.6e-50 170.5 3.7 5.3e-50 169.5 3.7 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344211962|ref|YP_004796282.1| - 6.5e-34 117.0 0.5 1.9e-33 115.5 0.5 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|344211962|ref|YP_004796282.1| - 7.4e-25 87.8 5.8 1.1e-24 87.2 5.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344211962|ref|YP_004796282.1| - 1.3e-23 83.0 0.0 2.6e-23 82.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Sec8_exocyst PF04048.14 gi|344211962|ref|YP_004796282.1| - 0.022 14.6 0.4 0.062 13.2 0.1 1.8 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Hexapep PF00132.24 gi|344211964|ref|YP_004796284.1| - 4.3e-13 48.4 5.8 9.8e-07 28.3 1.0 2.8 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344211964|ref|YP_004796284.1| - 5.3e-05 22.9 10.1 0.00055 19.6 2.2 2.9 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|344211964|ref|YP_004796284.1| - 0.0034 17.7 0.0 0.0051 17.2 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal HhH-GPD PF00730.25 gi|344211965|ref|YP_004796285.1| - 5.7e-11 42.8 0.0 8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|344211965|ref|YP_004796285.1| - 0.0068 17.0 0.0 0.032 14.8 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain HTH_33 PF13592.6 gi|344211965|ref|YP_004796285.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix PhoU PF01895.19 gi|344211966|ref|YP_004796286.1| - 0.13 12.7 0.9 0.45 11.0 0.9 1.9 1 1 0 1 1 1 0 PhoU domain Phage_integrase PF00589.22 gi|344211967|ref|YP_004796287.1| - 6.7e-40 136.7 0.0 1.7e-39 135.3 0.0 1.6 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|344211967|ref|YP_004796287.1| - 2.5e-08 34.2 0.0 1e-07 32.3 0.0 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|344211967|ref|YP_004796287.1| - 7.5e-05 23.0 0.0 0.0002 21.6 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF4865 PF16157.5 gi|344211971|ref|YP_004796291.1| - 0.014 15.4 0.3 0.022 14.7 0.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4865) RimK PF08443.11 gi|344211972|ref|YP_004796292.1| - 4.5e-29 101.4 0.0 1.8e-28 99.4 0.0 1.8 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|344211972|ref|YP_004796292.1| - 1.9e-12 47.6 0.0 3.7e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Zn_protease PF05618.11 gi|344211972|ref|YP_004796292.1| - 1.5e-10 41.1 0.1 2e-07 31.0 0.0 2.5 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|344211972|ref|YP_004796292.1| - 1.5e-08 34.3 0.0 3.4e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain R2K_3 PF14243.6 gi|344211972|ref|YP_004796292.1| - 0.00023 21.2 0.2 0.00053 20.1 0.2 1.7 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|344211972|ref|YP_004796292.1| - 0.00034 21.1 0.3 0.00083 19.9 0.3 1.7 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease ATPgrasp_YheCD PF14398.6 gi|344211972|ref|YP_004796292.1| - 0.026 13.8 0.0 0.073 12.3 0.0 1.7 1 1 0 1 1 1 0 YheC/D like ATP-grasp Asp_protease_2 PF13650.6 gi|344211972|ref|YP_004796292.1| - 0.063 13.9 0.9 0.19 12.4 0.9 1.9 1 0 0 1 1 1 0 Aspartyl protease AstE_AspA PF04952.14 gi|344211973|ref|YP_004796293.1| - 3.7e-66 223.2 0.0 4.6e-66 222.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.22 gi|344211974|ref|YP_004796294.1| - 6.6e-26 90.7 3.7 7.5e-26 90.5 3.7 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|344211975|ref|YP_004796295.1| - 1.1e-10 41.6 5.3 1.3e-10 41.3 5.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fer2_3 PF13085.6 gi|344211976|ref|YP_004796296.1| - 9.8e-33 112.4 0.2 3.6e-32 110.6 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|344211976|ref|YP_004796296.1| - 1.7e-12 47.6 4.0 1.7e-12 47.6 4.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344211976|ref|YP_004796296.1| - 9.4e-09 35.3 4.4 2.3e-08 34.0 4.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344211976|ref|YP_004796296.1| - 4e-06 27.3 5.1 4.7e-06 27.1 3.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344211976|ref|YP_004796296.1| - 3.2e-05 24.4 4.4 8.6e-05 23.0 4.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344211976|ref|YP_004796296.1| - 0.00035 20.7 8.7 0.0027 17.8 8.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344211976|ref|YP_004796296.1| - 0.016 16.1 14.5 0.026 15.4 1.8 3.4 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|344211976|ref|YP_004796296.1| - 0.03 14.4 2.3 0.23 11.6 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|344211976|ref|YP_004796296.1| - 0.48 11.1 8.7 0.94 10.1 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|344211976|ref|YP_004796296.1| - 1.6 9.0 12.4 1.8 8.8 1.4 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344211976|ref|YP_004796296.1| - 1.8 8.5 9.8 6.2 6.8 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|344211976|ref|YP_004796296.1| - 1.9 8.3 14.3 0.53 10.1 0.5 2.8 2 1 1 3 3 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|344211976|ref|YP_004796296.1| - 3.7 8.7 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344211976|ref|YP_004796296.1| - 4.7 7.4 7.6 8.1 6.7 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain PAS_3 PF08447.12 gi|344211977|ref|YP_004796297.1| - 4.6e-35 119.8 0.8 1.3e-16 60.6 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|344211977|ref|YP_004796297.1| - 1.3e-16 60.7 0.1 9.2e-08 32.3 0.0 2.6 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|344211977|ref|YP_004796297.1| - 3.6e-16 59.2 0.3 3.8e-07 30.1 0.0 2.7 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|344211977|ref|YP_004796297.1| - 7.9e-14 51.8 3.4 1.1e-07 32.1 0.3 2.6 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.6 gi|344211977|ref|YP_004796297.1| - 5.6e-12 45.8 0.0 0.00014 22.0 0.0 2.4 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.26 gi|344211977|ref|YP_004796297.1| - 1.1e-11 45.2 0.0 2.2e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211977|ref|YP_004796297.1| - 4.4e-10 39.4 0.4 9.7e-10 38.4 0.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|344211977|ref|YP_004796297.1| - 1.1e-07 31.7 0.5 0.0038 17.2 0.0 3.2 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 gi|344211977|ref|YP_004796297.1| - 0.0003 20.8 0.4 0.00076 19.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain FAD_binding_2 PF00890.24 gi|344211978|ref|YP_004796298.1| - 1.4e-120 403.2 6.8 1.4e-120 403.2 6.8 1.4 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|344211978|ref|YP_004796298.1| - 2.6e-37 127.7 0.9 4.4e-37 126.9 0.9 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|344211978|ref|YP_004796298.1| - 1.8e-08 34.0 1.3 0.0001 21.6 0.3 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|344211978|ref|YP_004796298.1| - 5.5e-05 22.0 0.0 0.00012 20.9 0.0 1.6 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|344211978|ref|YP_004796298.1| - 0.00017 20.8 3.8 0.00051 19.2 3.6 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|344211978|ref|YP_004796298.1| - 0.00058 19.6 7.8 0.009 15.6 7.3 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|344211978|ref|YP_004796298.1| - 0.00084 18.8 3.9 0.00084 18.8 3.9 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344211978|ref|YP_004796298.1| - 0.007 15.6 1.6 0.05 12.8 0.4 2.5 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.19 gi|344211978|ref|YP_004796298.1| - 0.019 14.2 1.0 0.019 14.2 1.0 1.9 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|344211978|ref|YP_004796298.1| - 0.031 13.5 0.6 0.14 11.3 0.3 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|344211978|ref|YP_004796298.1| - 0.18 11.1 1.5 0.38 10.0 1.5 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Cupin_2 PF07883.11 gi|344211979|ref|YP_004796299.1| - 3.9e-11 42.5 0.9 5.2e-11 42.1 0.9 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|344211979|ref|YP_004796299.1| - 2.9e-06 26.9 0.1 3.8e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|344211979|ref|YP_004796299.1| - 5.7e-05 22.9 0.1 7e-05 22.6 0.1 1.0 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 gi|344211979|ref|YP_004796299.1| - 0.0064 16.4 0.0 0.0078 16.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain DUF2917 PF11142.8 gi|344211979|ref|YP_004796299.1| - 0.024 14.0 0.1 0.053 12.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2917) EutQ PF06249.12 gi|344211979|ref|YP_004796299.1| - 0.041 13.6 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ KduI PF04962.12 gi|344211979|ref|YP_004796299.1| - 0.052 12.9 0.1 0.091 12.1 0.1 1.5 1 1 0 1 1 1 0 KduI/IolB family Pirin_C_2 PF17954.1 gi|344211979|ref|YP_004796299.1| - 0.07 13.3 0.0 0.097 12.9 0.0 1.1 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain Prok-RING_1 PF14446.6 gi|344211980|ref|YP_004796300.1| - 0.071 13.1 0.5 0.12 12.3 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|344211980|ref|YP_004796300.1| - 0.13 12.1 0.4 0.6 10.0 0.4 1.9 1 1 0 1 1 1 0 Rad50 zinc hook motif DBI_PRT PF02277.17 gi|344211981|ref|YP_004796301.1| - 4.1e-05 23.0 2.0 4.1e-05 23.0 2.0 1.7 2 0 0 2 2 2 1 Phosphoribosyltransferase GATase_3 PF07685.14 gi|344211982|ref|YP_004796302.1| - 9.9e-34 116.7 0.0 1.3e-33 116.3 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|344211982|ref|YP_004796302.1| - 9.4e-09 35.4 0.0 1.6e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|344211982|ref|YP_004796302.1| - 2.2e-08 34.2 0.0 0.00023 21.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|344211982|ref|YP_004796302.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|344211982|ref|YP_004796302.1| - 0.12 12.0 0.0 0.28 10.8 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S51 DisA_N PF02457.16 gi|344211983|ref|YP_004796303.1| - 9.8e-21 73.5 0.0 1.5e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|344211983|ref|YP_004796303.1| - 0.025 14.8 0.0 0.3 11.3 0.0 2.3 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain MS_channel PF00924.18 gi|344211984|ref|YP_004796304.1| - 1.8e-19 70.1 1.7 3.7e-19 69.1 1.7 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|344211984|ref|YP_004796304.1| - 0.014 15.4 7.2 0.02 14.9 0.1 3.2 3 0 0 3 3 3 0 Conserved TM helix Fimbrial_PilY2 PF14481.6 gi|344211984|ref|YP_004796304.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 Hexapep PF00132.24 gi|344211985|ref|YP_004796305.1| - 8.3e-08 31.7 4.8 1.2e-07 31.1 0.4 2.7 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344211985|ref|YP_004796305.1| - 1.7e-07 30.9 3.1 9.7e-07 28.4 0.7 2.7 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase GARS_A PF01071.19 gi|344211986|ref|YP_004796306.1| - 5e-53 179.8 0.0 1.2e-52 178.6 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|344211986|ref|YP_004796306.1| - 7.8e-22 77.9 0.1 1.5e-21 76.9 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|344211986|ref|YP_004796306.1| - 1.1e-11 44.9 0.9 2.4e-11 43.7 0.2 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|344211986|ref|YP_004796306.1| - 2.1e-05 24.6 0.0 4.2e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|344211986|ref|YP_004796306.1| - 0.015 14.6 0.0 0.047 12.9 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|344211986|ref|YP_004796306.1| - 0.024 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|344211986|ref|YP_004796306.1| - 0.075 12.6 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 ATP-grasp domain MMPL PF03176.15 gi|344211987|ref|YP_004796307.1| - 2.6 6.9 6.9 3.5 6.5 6.9 1.1 1 0 0 1 1 1 0 MMPL family Thioredox_DsbH PF03190.15 gi|344211988|ref|YP_004796308.1| - 6.7e-73 244.0 0.1 1.2e-72 243.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|344211988|ref|YP_004796308.1| - 2.5e-09 37.2 0.0 7.9e-09 35.6 0.0 1.9 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|344211988|ref|YP_004796308.1| - 0.00023 20.5 0.2 0.052 12.8 0.0 2.7 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin PF00085.20 gi|344211989|ref|YP_004796309.1| - 0.0011 19.0 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin AhpC-TSA PF00578.21 gi|344211989|ref|YP_004796309.1| - 0.081 12.9 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family NS3 PF17530.2 gi|344211989|ref|YP_004796309.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Non-structural protein NS3 DUF4604 PF15377.6 gi|344211989|ref|YP_004796309.1| - 0.16 12.4 0.2 0.23 11.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4604) Glyco_hydro_3_C PF01915.22 gi|344211990|ref|YP_004796310.1| - 1.4e-56 191.7 0.0 7.7e-56 189.3 0.0 2.2 2 1 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|344211990|ref|YP_004796310.1| - 3.2e-53 181.2 0.0 1.3e-52 179.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|344211990|ref|YP_004796310.1| - 3.4e-21 75.1 0.1 8.7e-21 73.8 0.1 1.8 1 0 0 1 1 1 1 Fibronectin type III-like domain HisKA_7TM PF16927.5 gi|344211991|ref|YP_004796311.1| - 1.1e-42 146.6 19.1 1.4e-42 146.2 19.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|344211991|ref|YP_004796311.1| - 1e-15 58.2 0.2 2.3e-15 57.1 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344211991|ref|YP_004796311.1| - 2.1e-10 40.5 0.5 4.5e-10 39.4 0.5 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|344211991|ref|YP_004796311.1| - 1.1e-08 35.3 0.1 3.2e-08 33.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344211991|ref|YP_004796311.1| - 6.3e-07 29.3 0.0 1.9e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.7 gi|344211991|ref|YP_004796311.1| - 1e-06 28.9 0.0 2.9e-06 27.5 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344211991|ref|YP_004796311.1| - 7.2e-06 26.0 0.0 1.3e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|344211991|ref|YP_004796311.1| - 0.0015 18.5 0.1 0.0032 17.4 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SpoVT_C PF15714.5 gi|344211991|ref|YP_004796311.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Stage V sporulation protein T C-terminal, transcription factor Hemerythrin PF01814.23 gi|344211991|ref|YP_004796311.1| - 1.4 9.6 8.7 5.3 7.7 8.7 1.9 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Lactamase_B PF00753.27 gi|344211994|ref|YP_004796314.1| - 1e-18 68.1 14.0 1.9e-17 63.9 13.8 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|344211994|ref|YP_004796314.1| - 3.2e-06 26.8 3.9 4.8e-06 26.2 3.9 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|344211994|ref|YP_004796314.1| - 0.055 13.4 2.6 0.07 13.0 2.6 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|344211994|ref|YP_004796314.1| - 0.11 11.9 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Osmo_CC PF08946.10 gi|344211994|ref|YP_004796314.1| - 7.8 6.8 6.8 24 5.3 0.0 3.4 3 1 1 4 4 4 0 Osmosensory transporter coiled coil Response_reg PF00072.24 gi|344211995|ref|YP_004796315.1| - 2e-21 76.2 0.1 4e-21 75.3 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|344211995|ref|YP_004796315.1| - 3.5e-21 75.3 9.1 3.5e-21 75.3 9.1 2.3 2 1 1 3 3 3 1 HalX domain GAT PF03127.14 gi|344211995|ref|YP_004796315.1| - 0.025 14.9 0.9 0.073 13.4 0.9 1.8 1 1 0 1 1 1 0 GAT domain RapH_N PF18801.1 gi|344211995|ref|YP_004796315.1| - 0.026 14.6 0.8 0.16 12.0 0.3 2.3 2 0 0 2 2 2 0 response regulator aspartate phosphatase H, N terminal ArnB_C PF18677.1 gi|344211995|ref|YP_004796315.1| - 0.073 13.2 1.5 0.16 12.1 1.3 1.6 1 1 0 1 1 1 0 Archaellum regulatory network B, C-terminal domain CHAD PF05235.14 gi|344211995|ref|YP_004796315.1| - 0.11 12.5 1.7 0.16 11.9 1.7 1.4 1 1 0 1 1 1 0 CHAD domain MapZ_EC1 PF18041.1 gi|344211995|ref|YP_004796315.1| - 0.28 11.4 2.9 1.7 8.9 0.7 2.2 1 1 1 2 2 2 0 MapZ extracellular domain 1 Pup PF05639.11 gi|344211995|ref|YP_004796315.1| - 0.65 10.9 5.5 15 6.6 0.0 3.3 3 0 0 3 3 3 0 Pup-like protein TPP_enzyme_N PF02776.18 gi|344211996|ref|YP_004796316.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.3 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thy1 PF02511.15 gi|344211997|ref|YP_004796317.1| - 3.5e-62 209.5 0.0 4e-62 209.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein eIF-5_eIF-2B PF01873.17 gi|344211999|ref|YP_004796319.1| - 1.8e-37 127.8 0.0 2.1e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Nuclease_act PF08133.11 gi|344211999|ref|YP_004796319.1| - 0.16 12.2 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Anticodon nuclease activator family DNA_RNApol_7kD PF03604.13 gi|344211999|ref|YP_004796319.1| - 0.37 10.5 3.0 2.7 7.7 3.3 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|344212000|ref|YP_004796320.1| - 6.5e-05 22.8 0.7 0.14 12.1 0.3 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon HypA PF01155.19 gi|344212000|ref|YP_004796320.1| - 0.00088 19.3 0.2 0.00093 19.2 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|344212000|ref|YP_004796320.1| - 0.0017 18.2 4.3 0.26 11.3 0.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.13 gi|344212000|ref|YP_004796320.1| - 0.0024 17.6 0.6 0.32 10.7 0.4 2.2 2 0 0 2 2 2 1 InsA N-terminal domain zinc_ribbon_10 PF10058.9 gi|344212000|ref|YP_004796320.1| - 0.0062 16.2 0.3 0.0084 15.8 0.3 1.3 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|344212000|ref|YP_004796320.1| - 0.0078 16.1 2.7 0.29 11.1 0.2 2.1 1 1 0 2 2 2 1 zinc-ribbon domain Elf1 PF05129.13 gi|344212000|ref|YP_004796320.1| - 0.0089 16.1 1.5 0.018 15.1 0.1 1.8 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like zinc-ribbons_6 PF07191.12 gi|344212000|ref|YP_004796320.1| - 0.0098 15.9 1.0 0.016 15.2 1.1 1.4 1 1 0 1 1 1 1 zinc-ribbons DUF4379 PF14311.6 gi|344212000|ref|YP_004796320.1| - 0.011 16.1 2.2 0.093 13.1 1.9 2.0 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-RING_4 PF14570.6 gi|344212000|ref|YP_004796320.1| - 0.013 15.2 1.5 3.5 7.5 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain TackOD1 PF18551.1 gi|344212000|ref|YP_004796320.1| - 0.015 15.0 0.4 0.017 14.8 0.4 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-LITAF-like PF10601.9 gi|344212000|ref|YP_004796320.1| - 0.019 15.2 0.9 1 9.6 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain UPF0515 PF15135.6 gi|344212000|ref|YP_004796320.1| - 0.023 14.1 0.3 0.025 13.9 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 Zn_Tnp_IS1595 PF12760.7 gi|344212000|ref|YP_004796320.1| - 0.023 14.7 4.2 0.19 11.7 0.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf_Rg PF17915.1 gi|344212000|ref|YP_004796320.1| - 0.024 14.1 0.2 4.5 6.8 0.1 2.3 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-3CxxC PF13695.6 gi|344212000|ref|YP_004796320.1| - 0.03 14.8 0.9 0.42 11.1 0.0 2.0 1 1 1 2 2 2 0 Zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|344212000|ref|YP_004796320.1| - 0.031 14.2 1.0 0.043 13.7 1.0 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|344212000|ref|YP_004796320.1| - 0.033 13.7 0.9 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|344212000|ref|YP_004796320.1| - 0.05 13.5 1.6 3.6 7.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Sgf11 PF08209.11 gi|344212000|ref|YP_004796320.1| - 0.053 13.1 1.6 1.3 8.7 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.6 gi|344212000|ref|YP_004796320.1| - 0.058 12.8 2.1 2.1 7.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|344212000|ref|YP_004796320.1| - 0.059 13.6 1.7 7.5 6.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon Dehyd-heme_bind PF09098.10 gi|344212000|ref|YP_004796320.1| - 0.099 12.2 0.1 0.099 12.2 0.1 1.1 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding Cys_rich_KTR PF14205.6 gi|344212000|ref|YP_004796320.1| - 0.1 12.4 1.6 6.4 6.7 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich KTR Anti-TRAP PF15777.5 gi|344212000|ref|YP_004796320.1| - 0.14 12.2 1.9 0.26 11.3 2.0 1.4 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein CpXC PF14353.6 gi|344212000|ref|YP_004796320.1| - 0.31 11.1 2.5 1.7 8.7 0.2 2.0 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|344212000|ref|YP_004796320.1| - 0.51 10.5 4.4 1.6 8.9 4.3 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|344212000|ref|YP_004796320.1| - 0.63 9.4 5.1 2.4 7.6 5.4 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger Rubredoxin PF00301.20 gi|344212000|ref|YP_004796320.1| - 0.72 9.9 6.5 0.59 10.2 0.5 2.2 1 1 1 2 2 2 0 Rubredoxin Rubredoxin_2 PF18073.1 gi|344212000|ref|YP_004796320.1| - 3.4 7.5 8.5 9.1 6.1 1.7 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIB PF00382.19 gi|344212001|ref|YP_004796321.1| - 5.1e-34 116.1 0.0 9.3e-16 57.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344212001|ref|YP_004796321.1| - 1e-16 60.1 5.2 1.8e-16 59.4 5.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|344212001|ref|YP_004796321.1| - 5.6e-05 23.2 0.0 0.018 15.1 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain A2L_zn_ribbon PF08792.10 gi|344212001|ref|YP_004796321.1| - 0.014 15.1 1.2 0.023 14.4 1.2 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|344212001|ref|YP_004796321.1| - 0.014 14.9 0.1 0.076 12.5 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Anti-TRAP PF15777.5 gi|344212001|ref|YP_004796321.1| - 0.049 13.6 0.6 0.092 12.7 0.6 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein HTH_Tnp_ISL3 PF13542.6 gi|344212001|ref|YP_004796321.1| - 0.1 12.0 0.0 0.81 9.1 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 zf-RRN7 PF11781.8 gi|344212001|ref|YP_004796321.1| - 0.15 11.8 1.6 0.22 11.2 1.6 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|344212001|ref|YP_004796321.1| - 3.1 8.0 5.5 8.4 6.6 0.8 2.4 1 1 2 3 3 3 0 Zinc ribbon domain HILPDA PF15220.6 gi|344212002|ref|YP_004796322.1| - 1.7 8.8 5.8 9.1 6.5 0.4 2.3 2 1 0 2 2 2 0 Hypoxia-inducible lipid droplet-associated HTH_5 PF01022.20 gi|344212003|ref|YP_004796323.1| - 3.3e-12 46.1 0.0 4.3e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|344212003|ref|YP_004796323.1| - 7.9e-10 38.7 0.0 1.1e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|344212003|ref|YP_004796323.1| - 2.4e-07 30.6 0.0 3.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|344212003|ref|YP_004796323.1| - 0.00033 20.5 0.0 0.00044 20.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344212003|ref|YP_004796323.1| - 0.00041 20.2 0.0 0.00047 20.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344212003|ref|YP_004796323.1| - 0.00045 19.7 0.0 0.0011 18.5 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|344212003|ref|YP_004796323.1| - 0.0045 17.1 0.0 0.0068 16.5 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_11 PF08279.12 gi|344212003|ref|YP_004796323.1| - 0.012 15.6 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|344212003|ref|YP_004796323.1| - 0.029 14.7 0.0 0.033 14.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|344212003|ref|YP_004796323.1| - 0.031 14.1 0.0 0.036 13.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|344212003|ref|YP_004796323.1| - 0.031 14.1 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4364 PF14277.6 gi|344212003|ref|YP_004796323.1| - 0.033 13.9 0.0 0.041 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_28 PF13518.6 gi|344212003|ref|YP_004796323.1| - 0.036 14.2 0.0 0.066 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|344212003|ref|YP_004796323.1| - 0.066 13.2 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|344212003|ref|YP_004796323.1| - 0.14 11.6 0.0 0.9 9.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF2089 PF09862.9 gi|344212003|ref|YP_004796323.1| - 0.2 11.7 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Fasciclin PF02469.22 gi|344212004|ref|YP_004796324.1| - 2.6e-24 85.9 0.0 3e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DUF357 PF04010.13 gi|344212005|ref|YP_004796325.1| - 1.1e-30 105.5 0.2 1.3e-30 105.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Cas_Cas1 PF01867.16 gi|344212005|ref|YP_004796325.1| - 0.14 11.2 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas1 Pyr_redox_2 PF07992.14 gi|344212006|ref|YP_004796326.1| - 7.5e-42 143.6 0.6 9.1e-42 143.3 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344212006|ref|YP_004796326.1| - 1.3e-15 57.5 0.0 1.3e-11 44.3 0.0 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344212006|ref|YP_004796326.1| - 1.8e-14 54.1 0.2 7e-13 48.9 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344212006|ref|YP_004796326.1| - 1.2e-05 24.6 1.6 0.00081 18.6 0.0 3.0 2 1 0 3 3 3 1 FAD binding domain HI0933_like PF03486.14 gi|344212006|ref|YP_004796326.1| - 3.6e-05 22.7 0.0 0.027 13.2 0.0 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|344212006|ref|YP_004796326.1| - 0.00014 22.0 0.0 0.0016 18.6 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|344212006|ref|YP_004796326.1| - 0.0013 19.2 0.0 0.02 15.3 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|344212006|ref|YP_004796326.1| - 0.0023 17.4 0.1 0.0066 15.9 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|344212006|ref|YP_004796326.1| - 0.0028 17.3 0.4 1.2 8.6 0.1 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|344212006|ref|YP_004796326.1| - 0.044 12.9 0.7 0.84 8.6 0.1 3.0 4 0 0 4 4 4 0 Glucose inhibited division protein A Thi4 PF01946.17 gi|344212006|ref|YP_004796326.1| - 0.094 11.9 0.0 0.8 8.9 0.0 2.2 2 0 0 2 2 2 0 Thi4 family RibD_C PF01872.17 gi|344212008|ref|YP_004796328.1| - 4.4e-51 173.6 0.0 4.9e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Tir_receptor_N PF07490.11 gi|344212008|ref|YP_004796328.1| - 0.02 14.7 0.1 0.027 14.3 0.1 1.1 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus tRNA_anti-codon PF01336.25 gi|344212010|ref|YP_004796330.1| - 4.1e-05 23.5 3.0 0.37 10.8 0.0 4.1 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Prot_ATP_OB_N PF17758.1 gi|344212010|ref|YP_004796330.1| - 0.016 14.8 1.7 5.5 6.7 0.1 3.9 4 0 0 4 4 4 0 Proteasomal ATPase OB N-terminal domain zf-RING_7 PF02591.15 gi|344212010|ref|YP_004796330.1| - 0.026 14.7 0.4 0.066 13.4 0.4 1.7 1 0 0 1 1 1 0 C4-type zinc ribbon domain Metallophos_2 PF12850.7 gi|344212012|ref|YP_004796332.1| - 1.2e-07 32.1 0.3 1.8e-07 31.5 0.3 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344212012|ref|YP_004796332.1| - 1.5e-05 25.6 1.8 0.00021 21.9 0.0 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase FBPase PF00316.20 gi|344212013|ref|YP_004796333.1| - 3.7e-26 91.8 0.0 5.9e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|344212013|ref|YP_004796333.1| - 0.0026 17.3 0.1 0.012 15.2 0.1 1.9 1 1 0 1 1 1 1 Inositol monophosphatase family DEAD_assoc PF08494.11 gi|344212014|ref|YP_004796334.1| - 9.7e-33 113.6 0.4 3.2e-32 111.9 0.0 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|344212014|ref|YP_004796334.1| - 1.1e-30 106.7 0.0 3.9e-30 104.9 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|344212014|ref|YP_004796334.1| - 4.1e-21 75.4 0.0 2e-20 73.2 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|344212014|ref|YP_004796334.1| - 1.5e-10 41.4 0.0 5.2e-10 39.6 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|344212014|ref|YP_004796334.1| - 0.0016 18.0 0.4 0.0058 16.2 0.4 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|344212014|ref|YP_004796334.1| - 0.0034 17.7 0.0 0.022 15.1 0.1 2.2 2 1 0 2 2 2 1 AAA domain HypA PF01155.19 gi|344212014|ref|YP_004796334.1| - 0.018 15.0 0.7 0.061 13.4 0.3 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|344212014|ref|YP_004796334.1| - 0.019 13.7 0.0 0.053 12.2 0.0 1.6 2 0 0 2 2 2 0 SNF2 family N-terminal domain Zn-ribbon_8 PF09723.10 gi|344212014|ref|YP_004796334.1| - 0.087 13.0 0.8 0.18 11.9 0.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_22 PF13401.6 gi|344212014|ref|YP_004796334.1| - 0.15 12.3 0.9 2.4 8.4 0.9 2.7 1 1 0 1 1 1 0 AAA domain LPD22 PF18834.1 gi|344212014|ref|YP_004796334.1| - 1.7 8.9 5.2 2.4 8.4 0.0 3.1 4 0 0 4 4 4 0 Large polyvalent protein associated domain 22 Spo0M PF07070.11 gi|344212015|ref|YP_004796335.1| - 7.9e-70 234.7 0.5 9.3e-70 234.4 0.5 1.0 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.22 gi|344212015|ref|YP_004796335.1| - 0.1 13.1 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain PAS_4 PF08448.10 gi|344212016|ref|YP_004796336.1| - 2.6e-30 104.9 1.3 3.7e-15 56.1 0.2 2.4 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|344212016|ref|YP_004796336.1| - 1.4e-21 76.7 0.0 3.1e-21 75.6 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|344212016|ref|YP_004796336.1| - 1e-15 57.8 0.0 1.7e-06 28.3 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|344212016|ref|YP_004796336.1| - 4.2e-14 52.5 0.1 9.7e-08 32.0 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|344212016|ref|YP_004796336.1| - 1.6e-12 47.1 0.0 4.4e-05 23.4 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.7 gi|344212016|ref|YP_004796336.1| - 4.3e-06 26.9 0.0 0.0066 16.6 0.1 2.8 2 1 0 2 2 2 2 PAS fold OKR_DC_1_N PF03709.15 gi|344212016|ref|YP_004796336.1| - 0.0011 19.2 0.0 0.004 17.4 0.0 2.0 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.12 gi|344212016|ref|YP_004796336.1| - 0.0016 18.7 0.0 0.23 11.8 0.0 2.4 2 0 0 2 2 2 1 PAS fold zf-ribbon_3 PF13248.6 gi|344212017|ref|YP_004796337.1| - 2.7e-06 26.6 2.9 4.6e-06 25.8 2.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|344212017|ref|YP_004796337.1| - 9.4e-05 22.0 3.1 0.00015 21.4 3.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|344212017|ref|YP_004796337.1| - 0.0007 19.6 0.7 0.0011 19.0 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Lipase_3 PF01764.25 gi|344212017|ref|YP_004796337.1| - 0.0098 15.8 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Lipase (class 3) zf_UBZ PF18439.1 gi|344212017|ref|YP_004796337.1| - 0.08 12.6 2.0 5.8 6.6 0.6 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2HC5 PF06221.13 gi|344212017|ref|YP_004796337.1| - 0.2 11.7 1.6 0.51 10.4 1.6 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF35_N PF12172.8 gi|344212017|ref|YP_004796337.1| - 0.21 11.5 3.3 0.37 10.7 3.3 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Wzy_C_2 PF11846.8 gi|344212017|ref|YP_004796337.1| - 0.27 11.1 1.1 0.53 10.2 1.1 1.4 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal zinc_ribbon_9 PF14369.6 gi|344212017|ref|YP_004796337.1| - 0.28 11.5 7.4 2.4 8.5 1.0 2.3 1 1 1 2 2 2 0 zinc-ribbon DNA_ligase_ZBD PF03119.16 gi|344212017|ref|YP_004796337.1| - 0.28 11.2 3.2 2.1 8.5 1.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ACC PF17848.1 gi|344212017|ref|YP_004796337.1| - 0.57 10.3 2.3 15 5.7 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|344212017|ref|YP_004796337.1| - 0.59 10.3 7.5 0.85 9.8 1.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|344212017|ref|YP_004796337.1| - 0.65 10.0 2.1 2 8.5 2.1 1.6 1 1 0 1 1 1 0 zinc-ribbons DUF3090 PF11290.8 gi|344212017|ref|YP_004796337.1| - 1.3 8.8 3.8 1.1 9.0 1.7 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3090) Zn_Tnp_IS1595 PF12760.7 gi|344212017|ref|YP_004796337.1| - 1.5 8.8 4.9 7.3 6.7 0.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|344212017|ref|YP_004796337.1| - 1.7 8.7 3.8 23 5.0 0.0 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.9 gi|344212017|ref|YP_004796337.1| - 2.8 8.1 7.6 5.3 7.2 7.6 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 MutS_V PF00488.21 gi|344212018|ref|YP_004796338.1| - 8.1e-09 35.8 0.0 1.3e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_28 PF13521.6 gi|344212018|ref|YP_004796338.1| - 0.0017 18.6 0.0 0.0017 18.6 0.0 3.2 4 0 0 4 4 4 1 AAA domain AAA_21 PF13304.6 gi|344212018|ref|YP_004796338.1| - 0.0072 16.2 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system HHH_5 PF14520.6 gi|344212018|ref|YP_004796338.1| - 0.013 16.1 3.0 0.27 11.9 0.1 3.6 3 0 0 3 3 3 0 Helix-hairpin-helix domain AAA_23 PF13476.6 gi|344212018|ref|YP_004796338.1| - 0.035 14.6 0.0 0.069 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|344212018|ref|YP_004796338.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|344212018|ref|YP_004796338.1| - 0.19 12.1 0.0 0.58 10.6 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif Apolipoprotein PF01442.18 gi|344212018|ref|YP_004796338.1| - 0.4 10.5 8.9 0.081 12.8 4.5 2.0 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Polyketide_cyc2 PF10604.9 gi|344212019|ref|YP_004796339.1| - 5.8e-15 55.8 0.5 6.4e-15 55.7 0.5 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|344212019|ref|YP_004796339.1| - 2.8e-08 34.0 0.0 3.7e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|344212019|ref|YP_004796339.1| - 0.00047 20.4 0.0 0.00076 19.7 0.0 1.4 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.13 gi|344212019|ref|YP_004796339.1| - 0.0074 16.0 0.0 0.027 14.2 0.0 1.9 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) E1-E2_ATPase PF00122.20 gi|344212021|ref|YP_004796341.1| - 2.4e-45 154.3 2.3 2.4e-45 154.3 2.3 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|344212021|ref|YP_004796341.1| - 8.9e-34 117.6 5.3 2e-33 116.5 5.3 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|344212021|ref|YP_004796341.1| - 2e-09 37.7 0.0 5.7e-09 36.3 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|344212021|ref|YP_004796341.1| - 3.3e-05 23.8 0.8 4.8e-05 23.2 0.8 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|344212021|ref|YP_004796341.1| - 0.008 16.9 0.6 0.025 15.3 0.4 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.6 gi|344212022|ref|YP_004796342.1| - 1e-49 169.2 16.8 1.3e-49 168.8 16.8 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region YtpI PF14007.6 gi|344212022|ref|YP_004796342.1| - 5.1 7.3 5.8 3.2 8.0 0.8 2.3 2 0 0 2 2 2 0 YtpI-like protein Copper-bind PF00127.20 gi|344212024|ref|YP_004796344.1| - 1.2e-34 118.7 1.5 1.4e-16 60.8 0.1 2.9 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family SPC25 PF06703.11 gi|344212024|ref|YP_004796344.1| - 0.11 12.3 0.2 0.21 11.4 0.2 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) PKD PF00801.20 gi|344212024|ref|YP_004796344.1| - 0.17 11.8 16.0 0.16 11.9 0.9 2.8 2 1 0 2 2 2 0 PKD domain IATP PF04568.12 gi|344212024|ref|YP_004796344.1| - 2.3 8.7 0.0 2.3 8.7 0.0 2.8 3 0 0 3 3 3 0 Mitochondrial ATPase inhibitor, IATP COX2 PF00116.20 gi|344212025|ref|YP_004796345.1| - 7.1e-12 45.3 0.1 9.2e-12 44.9 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|344212025|ref|YP_004796345.1| - 5.1e-06 26.5 0.0 8e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain DUF4859 PF16151.5 gi|344212025|ref|YP_004796345.1| - 0.092 12.6 0.3 0.15 11.9 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4859) COX1 PF00115.20 gi|344212026|ref|YP_004796346.1| - 5e-94 315.6 53.3 5e-94 315.6 53.3 1.9 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I DUF11 PF01345.18 gi|344212027|ref|YP_004796347.1| - 0.041 14.2 6.2 0.064 13.6 6.2 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF11 zinc_ribbon_2 PF13240.6 gi|344212028|ref|YP_004796348.1| - 7e-05 22.4 3.2 0.00011 21.8 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|344212028|ref|YP_004796348.1| - 0.00014 21.8 1.0 0.00023 21.1 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|344212028|ref|YP_004796348.1| - 0.0013 18.0 5.7 0.0026 17.1 5.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|344212028|ref|YP_004796348.1| - 0.031 15.0 0.1 0.046 14.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family zf-C3HC4_3 PF13920.6 gi|344212028|ref|YP_004796348.1| - 0.22 11.4 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.8 gi|344212028|ref|YP_004796348.1| - 0.22 11.4 3.9 0.52 10.3 3.9 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.9 gi|344212028|ref|YP_004796348.1| - 0.78 9.9 4.7 1.3 9.1 4.7 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Utp14 PF04615.13 gi|344212028|ref|YP_004796348.1| - 3.5 6.1 7.1 4.6 5.7 7.1 1.0 1 0 0 1 1 1 0 Utp14 protein DZR PF12773.7 gi|344212029|ref|YP_004796349.1| - 5.9e-12 45.4 8.4 9.7e-12 44.7 8.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344212029|ref|YP_004796349.1| - 3e-11 42.7 7.2 3.7e-05 23.3 0.9 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|344212029|ref|YP_004796349.1| - 4.7e-10 38.5 8.7 1.6e-05 24.2 1.5 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|344212029|ref|YP_004796349.1| - 5.4e-08 33.5 5.1 0.0024 18.6 0.7 2.3 2 0 0 2 2 2 2 zinc-ribbon family FHA PF00498.26 gi|344212029|ref|YP_004796349.1| - 1e-06 29.0 0.0 1.9e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 FHA domain UPF0547 PF10571.9 gi|344212029|ref|YP_004796349.1| - 8.4e-05 22.6 10.8 0.013 15.5 1.9 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|344212029|ref|YP_004796349.1| - 0.0044 17.1 8.3 0.13 12.4 0.5 3.4 2 1 1 3 3 3 1 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|344212029|ref|YP_004796349.1| - 0.011 15.6 9.4 0.035 14.0 0.7 3.7 4 0 0 4 4 4 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|344212029|ref|YP_004796349.1| - 0.012 15.5 5.8 0.6 10.1 0.6 2.2 1 1 0 2 2 2 0 zinc-ribbons zinc-ribbon_6 PF10005.9 gi|344212029|ref|YP_004796349.1| - 0.025 15.3 2.3 3.8 8.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|344212029|ref|YP_004796349.1| - 0.099 12.7 5.5 0.29 11.2 0.2 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Yop-YscD_cpl PF16697.5 gi|344212029|ref|YP_004796349.1| - 0.12 12.7 0.0 0.64 10.4 0.0 2.1 2 0 0 2 2 2 0 Inner membrane component of T3SS, cytoplasmic domain FHA_2 PF17913.1 gi|344212029|ref|YP_004796349.1| - 0.2 11.9 0.0 0.38 11.0 0.0 1.4 1 0 0 1 1 1 0 FHA domain zf-CHY PF05495.12 gi|344212029|ref|YP_004796349.1| - 0.22 12.0 1.7 1.8 9.1 0.4 2.2 1 1 1 2 2 2 0 CHY zinc finger PLATZ PF04640.14 gi|344212029|ref|YP_004796349.1| - 0.35 11.5 5.3 1.2 9.8 0.8 2.3 1 1 1 2 2 2 0 PLATZ transcription factor zf-C3HC4_3 PF13920.6 gi|344212029|ref|YP_004796349.1| - 0.93 9.4 5.2 1.9 8.4 0.2 2.5 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Lin-8 PF03353.15 gi|344212029|ref|YP_004796349.1| - 1.6 8.2 5.0 1.8 8.0 5.0 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Cytochrom_c3_2 PF14537.6 gi|344212029|ref|YP_004796349.1| - 1.7 9.1 7.9 2.1 8.8 3.1 2.6 2 1 0 2 2 2 0 Cytochrome c3 NMD3 PF04981.13 gi|344212029|ref|YP_004796349.1| - 1.8 8.0 4.7 3 7.2 4.7 1.4 1 0 0 1 1 1 0 NMD3 family Apt1 PF10351.9 gi|344212029|ref|YP_004796349.1| - 1.9 7.3 4.3 2.3 7.0 4.3 1.3 1 0 0 1 1 1 0 Golgi-body localisation protein domain Prok-RING_4 PF14447.6 gi|344212029|ref|YP_004796349.1| - 2.9 7.8 5.5 19 5.2 0.0 2.8 3 1 0 3 3 2 0 Prokaryotic RING finger family 4 OrfB_Zn_ribbon PF07282.11 gi|344212029|ref|YP_004796349.1| - 6 6.9 10.1 3.6 7.6 1.3 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|344212029|ref|YP_004796349.1| - 7.2 6.9 8.8 8.6 6.6 1.4 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PP2C_2 PF13672.6 gi|344212030|ref|YP_004796350.1| - 5.1e-11 42.6 0.0 1e-10 41.6 0.0 1.4 1 1 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|344212030|ref|YP_004796350.1| - 2.7e-05 24.0 0.1 0.00021 21.0 0.0 2.3 2 2 0 2 2 2 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|344212030|ref|YP_004796350.1| - 5.5e-05 23.2 4.3 0.00032 20.7 4.3 2.1 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.25 gi|344212031|ref|YP_004796351.1| - 2.5e-28 99.2 0.0 3.1e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|344212031|ref|YP_004796351.1| - 1.9e-15 56.9 0.0 2.4e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.26 gi|344212031|ref|YP_004796351.1| - 7.4e-06 26.2 0.0 1.8e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 FHA domain RIO1 PF01163.22 gi|344212031|ref|YP_004796351.1| - 0.0047 16.5 0.0 0.0077 15.9 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|344212031|ref|YP_004796351.1| - 0.0068 16.3 0.2 0.015 15.2 0.0 1.7 2 0 0 2 2 2 1 Phosphotransferase enzyme family Kinase-like PF14531.6 gi|344212031|ref|YP_004796351.1| - 0.011 15.1 0.0 0.098 12.0 0.0 2.0 2 0 0 2 2 2 0 Kinase-like Pkinase_fungal PF17667.1 gi|344212031|ref|YP_004796351.1| - 0.19 10.5 0.0 0.29 9.9 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase VWA PF00092.28 gi|344212032|ref|YP_004796352.1| - 2.8e-16 60.2 0.1 1.5e-15 57.9 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|344212032|ref|YP_004796352.1| - 2.3e-12 47.5 0.8 1.5e-11 44.9 0.0 2.2 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|344212032|ref|YP_004796352.1| - 8.7e-07 29.0 0.0 1.8e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|344212032|ref|YP_004796352.1| - 9.6e-06 25.1 0.0 2.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|344212032|ref|YP_004796352.1| - 5.4e-05 23.3 0.0 0.00013 22.0 0.0 1.7 1 0 0 1 1 1 1 VWA-like domain (DUF2201) DUF1735 PF08522.10 gi|344212032|ref|YP_004796352.1| - 0.12 13.0 0.1 0.25 11.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1735) MerT PF02411.15 gi|344212033|ref|YP_004796353.1| - 0.72 9.9 7.1 0.42 10.6 4.6 1.9 1 1 1 2 2 2 0 MerT mercuric transport protein DUF3179 PF11376.8 gi|344212034|ref|YP_004796354.1| - 6.1e-100 334.3 0.1 7e-100 334.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Abhydrolase_2 PF02230.16 gi|344212035|ref|YP_004796355.1| - 1.5e-20 73.9 0.0 8.6e-20 71.5 0.0 1.8 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|344212035|ref|YP_004796355.1| - 1.6e-07 31.1 0.0 2.8e-07 30.3 0.0 1.5 1 1 1 2 2 2 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|344212035|ref|YP_004796355.1| - 2.3e-05 23.8 0.1 0.22 10.8 0.0 3.0 2 1 1 3 3 3 2 Serine aminopeptidase, S33 FSH1 PF03959.13 gi|344212035|ref|YP_004796355.1| - 9.8e-05 22.1 0.0 0.00012 21.8 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.20 gi|344212035|ref|YP_004796355.1| - 0.003 17.2 0.0 0.0034 17.1 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold PE-PPE PF08237.11 gi|344212035|ref|YP_004796355.1| - 0.016 14.8 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 PE-PPE domain Peptidase_S9 PF00326.21 gi|344212035|ref|YP_004796355.1| - 0.018 14.5 0.1 2.7 7.4 0.0 2.4 2 1 1 3 3 3 0 Prolyl oligopeptidase family Esterase_phd PF10503.9 gi|344212035|ref|YP_004796355.1| - 0.045 13.2 0.0 0.076 12.5 0.0 1.4 1 1 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_6 PF12697.7 gi|344212035|ref|YP_004796355.1| - 0.047 14.3 0.2 0.51 10.9 0.1 1.9 1 1 0 2 2 2 0 Alpha/beta hydrolase family DUF3243 PF11588.8 gi|344212035|ref|YP_004796355.1| - 0.075 13.3 0.0 0.6 10.4 0.0 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3243) Abhydrolase_3 PF07859.13 gi|344212035|ref|YP_004796355.1| - 0.096 12.5 0.2 1.1 9.1 0.0 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Glyoxalase PF00903.25 gi|344212036|ref|YP_004796356.1| - 1.9e-23 83.1 0.1 8.3e-13 48.7 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|344212036|ref|YP_004796356.1| - 3.3e-05 24.6 0.6 0.0053 17.5 0.0 2.5 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|344212036|ref|YP_004796356.1| - 0.0026 18.0 0.0 1.4 9.2 0.0 3.6 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.6 gi|344212036|ref|YP_004796356.1| - 0.037 14.1 0.0 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 CppA N-terminal UPF0058 PF01893.16 gi|344212037|ref|YP_004796357.1| - 5.7e-21 74.6 0.5 6.5e-21 74.4 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.12 gi|344212038|ref|YP_004796358.1| - 1.6e-40 137.5 0.2 2.1e-40 137.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.6 gi|344212038|ref|YP_004796358.1| - 0.025 14.0 0.2 0.046 13.1 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|344212038|ref|YP_004796358.1| - 0.038 13.9 0.1 0.084 12.8 0.1 1.6 1 0 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|344212038|ref|YP_004796358.1| - 0.11 12.4 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|344212038|ref|YP_004796358.1| - 0.12 12.1 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HhH-GPD PF00730.25 gi|344212039|ref|YP_004796359.1| - 1.1e-13 51.6 0.0 1.9e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|344212039|ref|YP_004796359.1| - 4.3e-05 23.6 0.0 0.00022 21.3 0.0 2.0 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain Acylphosphatase PF00708.18 gi|344212040|ref|YP_004796360.1| - 5.9e-25 87.5 0.6 6.9e-25 87.3 0.6 1.1 1 0 0 1 1 1 1 Acylphosphatase YjeF_N PF03853.15 gi|344212041|ref|YP_004796361.1| - 1.1e-43 149.0 2.1 1.2e-43 149.0 0.3 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus Carb_kinase PF01256.17 gi|344212041|ref|YP_004796361.1| - 2.3e-43 148.4 0.4 3.3e-43 147.9 0.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|344212041|ref|YP_004796361.1| - 1.6e-06 27.7 0.0 3e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family GTP-bdg_N PF13167.6 gi|344212042|ref|YP_004796362.1| - 7.1e-22 77.9 0.0 2e-21 76.5 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|344212042|ref|YP_004796362.1| - 1.4e-17 63.8 0.0 3.2e-17 62.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|344212042|ref|YP_004796362.1| - 1.7e-15 57.4 7.6 3.6e-15 56.3 7.6 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|344212042|ref|YP_004796362.1| - 1.1e-10 41.4 0.2 3.1e-10 39.9 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|344212042|ref|YP_004796362.1| - 8.3e-10 38.8 0.2 7.2e-05 22.8 0.1 2.6 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|344212042|ref|YP_004796362.1| - 1.4e-06 28.3 0.1 2.7e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|344212042|ref|YP_004796362.1| - 3e-06 27.0 0.3 0.00059 19.5 0.1 2.6 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|344212042|ref|YP_004796362.1| - 8.2e-05 22.2 0.2 0.095 12.2 0.1 2.7 3 0 0 3 3 3 2 Ferrous iron transport protein B MnmE_helical PF12631.7 gi|344212042|ref|YP_004796362.1| - 0.0021 18.2 0.1 0.0035 17.6 0.1 1.3 1 0 0 1 1 1 1 MnmE helical domain Ras PF00071.22 gi|344212042|ref|YP_004796362.1| - 0.0029 17.2 0.0 0.025 14.2 0.0 2.1 2 0 0 2 2 2 1 Ras family AAA_14 PF13173.6 gi|344212042|ref|YP_004796362.1| - 0.013 15.6 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arf PF00025.21 gi|344212042|ref|YP_004796362.1| - 0.014 14.9 1.0 1.1 8.7 1.0 2.4 1 1 0 1 1 1 0 ADP-ribosylation factor family AAA_18 PF13238.6 gi|344212042|ref|YP_004796362.1| - 0.016 15.8 0.7 0.15 12.6 0.0 2.8 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|344212042|ref|YP_004796362.1| - 0.029 14.4 0.0 0.76 9.8 0.0 2.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|344212042|ref|YP_004796362.1| - 0.04 14.4 0.0 0.14 12.7 0.0 2.0 1 1 0 1 1 1 0 ABC transporter Roc PF08477.13 gi|344212042|ref|YP_004796362.1| - 0.04 14.1 0.0 0.51 10.6 0.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase cwf21 PF08312.12 gi|344212042|ref|YP_004796362.1| - 0.085 13.0 4.4 1.4 9.1 2.2 2.8 2 0 0 2 2 2 0 cwf21 domain ATP_bind_1 PF03029.17 gi|344212042|ref|YP_004796362.1| - 0.09 12.5 0.2 0.51 10.1 0.1 2.1 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|344212042|ref|YP_004796362.1| - 0.51 10.8 4.9 21 5.6 0.0 2.8 2 1 1 3 3 3 0 AAA domain DUF4604 PF15377.6 gi|344212042|ref|YP_004796362.1| - 0.59 10.5 3.3 0.4 11.1 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4604) peroxidase PF00141.23 gi|344212043|ref|YP_004796363.1| - 5e-91 304.5 0.0 2.8e-51 174.4 0.0 2.3 2 0 0 2 2 2 2 Peroxidase FUN14 PF04930.15 gi|344212044|ref|YP_004796364.1| - 1.5e-21 76.6 5.8 1.8e-21 76.4 5.8 1.0 1 0 0 1 1 1 1 FUN14 family Cu PF17563.2 gi|344212044|ref|YP_004796364.1| - 1.9 8.8 6.6 3 8.1 1.0 2.3 2 0 0 2 2 2 0 Cupiennin SBDS PF01172.18 gi|344212045|ref|YP_004796365.1| - 5.3e-20 71.3 0.0 8.1e-20 70.7 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|344212045|ref|YP_004796365.1| - 1.9e-17 63.4 0.0 3.2e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|344212046|ref|YP_004796366.1| - 5.2e-59 198.9 0.0 6.7e-59 198.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|344212046|ref|YP_004796366.1| - 8.9e-14 50.9 0.1 1.6e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.19 gi|344212047|ref|YP_004796367.1| - 4.6e-22 78.2 0.0 8.5e-22 77.4 0.0 1.4 2 0 0 2 2 2 1 Rpp14/Pop5 family DUF5073 PF16817.5 gi|344212048|ref|YP_004796368.1| - 0.0036 17.3 0.0 0.0049 16.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5073) RNase_P_p30 PF01876.16 gi|344212049|ref|YP_004796369.1| - 3.8e-44 150.7 0.0 4.3e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 FMN_dh PF01070.18 gi|344212049|ref|YP_004796369.1| - 0.035 13.1 1.0 0.06 12.4 1.0 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase RNA_binding PF01877.17 gi|344212050|ref|YP_004796370.1| - 7.9e-32 110.0 0.0 9.7e-32 109.7 0.0 1.1 1 0 0 1 1 1 1 RNA binding Ins145_P3_rec PF08709.11 gi|344212050|ref|YP_004796370.1| - 0.19 10.9 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Inositol 1,4,5-trisphosphate/ryanodine receptor DUF1918 PF08940.11 gi|344212051|ref|YP_004796371.1| - 0.0023 17.5 0.1 0.0026 17.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) LBR_tudor PF09465.10 gi|344212051|ref|YP_004796371.1| - 0.029 14.2 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain Tudor_3 PF18115.1 gi|344212051|ref|YP_004796371.1| - 0.1 12.4 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA repair protein Crb2 Tudor domain NUDIX PF00293.28 gi|344212052|ref|YP_004796372.1| - 1.4e-16 60.7 0.9 2e-16 60.2 0.9 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4838 PF16126.5 gi|344212053|ref|YP_004796373.1| - 0.074 12.4 0.0 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4838) ThiC_Rad_SAM PF01964.18 gi|344212054|ref|YP_004796374.1| - 1.4e-192 640.1 0.0 1.6e-192 639.9 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family SBP_bac_11 PF13531.6 gi|344212055|ref|YP_004796375.1| - 1.6e-20 73.8 3.6 2.1e-20 73.5 3.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|344212056|ref|YP_004796376.1| - 2.1e-16 60.2 13.0 2.1e-16 60.2 13.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC2_membrane_5 PF13346.6 gi|344212056|ref|YP_004796376.1| - 0.78 9.2 9.8 1.5 8.3 9.8 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein MobB PF03205.14 gi|344212057|ref|YP_004796377.1| - 7.6e-27 93.8 0.0 1.3e-26 93.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MoaE PF02391.17 gi|344212057|ref|YP_004796377.1| - 1.2e-22 80.3 0.1 2e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 MoaE protein GTP_EFTU PF00009.27 gi|344212057|ref|YP_004796377.1| - 0.00043 19.9 0.4 0.0009 18.8 0.4 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|344212057|ref|YP_004796377.1| - 0.0017 18.4 0.0 0.0036 17.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|344212057|ref|YP_004796377.1| - 0.0064 16.9 1.6 0.025 15.0 1.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|344212057|ref|YP_004796377.1| - 0.016 15.7 0.0 0.025 15.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter PRK PF00485.18 gi|344212057|ref|YP_004796377.1| - 0.019 14.7 0.0 0.041 13.6 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|344212057|ref|YP_004796377.1| - 0.029 14.5 0.0 0.059 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|344212057|ref|YP_004796377.1| - 0.037 14.5 0.0 0.081 13.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|344212057|ref|YP_004796377.1| - 0.041 14.4 0.0 1.7 9.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|344212057|ref|YP_004796377.1| - 0.046 12.7 0.1 0.089 11.8 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Roc PF08477.13 gi|344212057|ref|YP_004796377.1| - 0.056 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|344212057|ref|YP_004796377.1| - 0.084 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.6 gi|344212057|ref|YP_004796377.1| - 0.094 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3906 PF13046.6 gi|344212057|ref|YP_004796377.1| - 0.14 12.2 0.2 0.34 11.0 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) AAA_29 PF13555.6 gi|344212057|ref|YP_004796377.1| - 0.17 11.6 0.1 0.37 10.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|344212057|ref|YP_004796377.1| - 0.84 9.9 6.2 26 5.0 6.2 3.0 1 1 0 1 1 1 0 AAA domain MoaC PF01967.21 gi|344212058|ref|YP_004796378.1| - 4e-48 162.9 4.7 4.8e-48 162.7 4.7 1.0 1 0 0 1 1 1 1 MoaC family MoCF_biosynth PF00994.24 gi|344212059|ref|YP_004796379.1| - 1.4e-36 125.3 0.2 1.7e-36 125.0 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain TRAM PF01938.20 gi|344212060|ref|YP_004796380.1| - 2e-10 40.5 2.6 3.3e-10 39.8 2.6 1.4 1 0 0 1 1 1 1 TRAM domain DUF4551 PF15087.6 gi|344212060|ref|YP_004796380.1| - 1.7 7.4 4.3 1.9 7.2 4.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) AF-4 PF05110.13 gi|344212060|ref|YP_004796380.1| - 7.8 4.4 14.4 8.6 4.3 14.4 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein HD PF01966.22 gi|344212062|ref|YP_004796382.1| - 3e-09 37.2 2.6 4.7e-09 36.5 2.6 1.3 1 0 0 1 1 1 1 HD domain HTH_10 PF04967.12 gi|344212063|ref|YP_004796383.1| - 9.8e-21 73.3 0.1 1.6e-20 72.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344212063|ref|YP_004796383.1| - 0.0003 20.7 3.7 0.00054 19.9 3.7 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain GerE PF00196.19 gi|344212063|ref|YP_004796383.1| - 0.0039 16.7 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|344212063|ref|YP_004796383.1| - 0.0076 16.1 0.1 0.093 12.6 0.1 2.7 3 0 0 3 3 3 1 MarR family Sigma70_r4 PF04545.16 gi|344212063|ref|YP_004796383.1| - 0.014 14.9 0.0 0.037 13.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|344212063|ref|YP_004796383.1| - 0.031 14.1 0.1 0.16 11.8 0.1 2.2 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|344212063|ref|YP_004796383.1| - 0.074 12.6 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rieske PF00355.26 gi|344212065|ref|YP_004796385.1| - 1.4e-09 37.8 0.0 2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.6 gi|344212066|ref|YP_004796386.1| - 1.2e-44 152.4 0.3 1.2e-44 152.4 0.3 2.5 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|344212066|ref|YP_004796386.1| - 5.1e-31 108.0 12.6 5.8e-30 104.5 8.0 3.0 2 1 0 2 2 2 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|344212066|ref|YP_004796386.1| - 1.2e-06 28.8 1.8 1.6e-06 28.3 0.3 2.1 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|344212066|ref|YP_004796386.1| - 0.00075 20.0 6.9 0.00075 20.0 6.9 3.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) Mntp PF02659.15 gi|344212066|ref|YP_004796386.1| - 0.099 12.4 0.1 0.099 12.4 0.1 2.5 3 0 0 3 3 3 0 Putative manganese efflux pump UCR_Fe-S_N PF10399.9 gi|344212066|ref|YP_004796386.1| - 0.21 11.0 0.1 0.21 11.0 0.1 3.4 4 0 0 4 4 4 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ni_hydr_CYTB PF01292.20 gi|344212066|ref|YP_004796386.1| - 4.1 7.0 20.8 0.019 14.6 1.9 3.2 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 DUF2339 PF10101.9 gi|344212067|ref|YP_004796387.1| - 0.014 14.0 0.3 0.014 14.0 0.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) XdhC_C PF13478.6 gi|344212067|ref|YP_004796387.1| - 0.069 13.7 0.0 0.077 13.5 0.0 1.1 1 0 0 1 1 1 0 XdhC Rossmann domain Molybdopterin PF00384.22 gi|344212068|ref|YP_004796388.1| - 5e-87 292.6 0.0 7.8e-87 292.0 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344212068|ref|YP_004796388.1| - 5.5e-22 77.9 0.0 1.2e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|344212068|ref|YP_004796388.1| - 0.024 14.5 3.4 0.045 13.6 3.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.16 gi|344212068|ref|YP_004796388.1| - 0.028 14.4 0.3 0.057 13.4 0.3 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|344212068|ref|YP_004796388.1| - 0.087 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.6 gi|344212069|ref|YP_004796389.1| - 5.9e-29 100.1 6.3 5.9e-29 100.1 6.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344212069|ref|YP_004796389.1| - 5.5e-12 45.6 17.0 6.3e-05 23.0 7.3 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344212069|ref|YP_004796389.1| - 4.5e-11 43.2 13.1 8.2e-06 26.3 2.1 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344212069|ref|YP_004796389.1| - 2.3e-07 30.9 19.1 0.0063 16.6 6.3 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344212069|ref|YP_004796389.1| - 0.0007 19.5 30.4 0.0047 16.9 2.2 4.2 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|344212069|ref|YP_004796389.1| - 0.00096 18.9 29.6 0.012 15.3 2.8 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344212069|ref|YP_004796389.1| - 0.0012 18.8 26.7 0.016 15.3 1.1 4.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344212069|ref|YP_004796389.1| - 0.0052 17.2 1.1 0.0052 17.2 1.1 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|344212069|ref|YP_004796389.1| - 0.0089 16.6 0.1 0.0089 16.6 0.1 3.8 3 1 0 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|344212069|ref|YP_004796389.1| - 0.011 16.3 20.0 0.31 11.6 0.2 4.2 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|344212069|ref|YP_004796389.1| - 0.014 16.1 10.6 0.12 13.1 0.0 3.7 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|344212069|ref|YP_004796389.1| - 0.024 14.8 2.3 0.024 14.8 2.3 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|344212069|ref|YP_004796389.1| - 0.45 11.6 34.2 0.39 11.7 5.7 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|344212069|ref|YP_004796389.1| - 4.3 8.3 25.5 5.6 8.0 1.1 4.1 2 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|344212069|ref|YP_004796389.1| - 7.1 7.2 22.1 1.5 9.3 2.7 4.1 2 1 3 5 5 5 0 4Fe-4S dicluster domain EB_dh PF09459.10 gi|344212070|ref|YP_004796390.1| - 2e-33 116.4 5.6 6.7e-31 108.1 5.6 2.0 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.15 gi|344212071|ref|YP_004796391.1| - 2.5e-11 43.8 0.7 1e-10 41.8 0.6 1.9 1 1 0 1 1 1 1 Nitrate reductase delta subunit HEAT_2 PF13646.6 gi|344212073|ref|YP_004796393.1| - 1.3e-24 86.3 30.7 3e-11 43.6 6.2 3.3 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|344212073|ref|YP_004796393.1| - 1.1e-08 34.6 12.9 0.77 10.2 0.2 5.9 6 0 0 6 6 6 4 HEAT repeat Cnd1 PF12717.7 gi|344212073|ref|YP_004796393.1| - 4.8e-05 23.5 2.2 0.11 12.5 0.0 4.2 1 1 3 4 4 4 1 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|344212073|ref|YP_004796393.1| - 0.00013 22.4 14.4 0.069 13.7 0.3 5.6 6 0 0 6 6 6 2 HEAT-like repeat Vac14_Fab1_bd PF12755.7 gi|344212073|ref|YP_004796393.1| - 0.008 16.8 0.1 3.6 8.3 0.0 3.4 2 1 1 3 3 3 1 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.20 gi|344212073|ref|YP_004796393.1| - 0.02 13.5 0.6 0.52 8.8 0.1 2.6 1 1 1 3 3 3 0 Adaptin N terminal region DNA_alkylation PF08713.11 gi|344212073|ref|YP_004796393.1| - 0.22 11.2 4.7 0.77 9.4 4.1 1.9 1 1 1 2 2 2 0 DNA alkylation repair enzyme ParA PF10609.9 gi|344212074|ref|YP_004796394.1| - 9.2e-62 208.7 0.0 1.3e-61 208.2 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|344212074|ref|YP_004796394.1| - 2.7e-16 59.2 0.6 5.9e-16 58.1 0.6 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) CbiA PF01656.23 gi|344212074|ref|YP_004796394.1| - 5.5e-13 49.1 0.0 9.4e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|344212074|ref|YP_004796394.1| - 6.2e-10 39.1 3.7 8.7e-10 38.6 2.2 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|344212074|ref|YP_004796394.1| - 7.5e-06 26.0 0.1 3.9e-05 23.6 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|344212074|ref|YP_004796394.1| - 3.5e-05 23.5 0.6 0.0042 16.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|344212074|ref|YP_004796394.1| - 5.4e-05 22.6 0.5 8.8e-05 21.9 0.5 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|344212074|ref|YP_004796394.1| - 0.001 19.0 0.1 0.064 13.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|344212074|ref|YP_004796394.1| - 0.0017 17.7 0.0 0.0029 16.9 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|344212074|ref|YP_004796394.1| - 0.0049 16.1 0.6 0.085 12.0 0.2 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase UPF0126 PF03458.13 gi|344212075|ref|YP_004796395.1| - 1.2e-35 121.2 26.9 5.1e-19 67.9 4.4 2.5 3 0 0 3 3 3 2 UPF0126 domain Nitrate_red_del PF02613.15 gi|344212076|ref|YP_004796396.1| - 3.2e-31 108.2 0.0 4.5e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.14 gi|344212077|ref|YP_004796397.1| - 1.1e-69 235.5 20.5 2e-69 234.7 20.5 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.6 gi|344212078|ref|YP_004796398.1| - 2e-21 76.0 18.7 3.6e-14 52.7 7.2 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344212078|ref|YP_004796398.1| - 5.5e-18 65.3 26.2 9.7e-09 35.7 10.3 2.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344212078|ref|YP_004796398.1| - 1.1e-16 60.7 23.3 6.1e-10 39.1 7.1 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|344212078|ref|YP_004796398.1| - 9.8e-15 53.9 34.9 5.4e-08 32.6 4.4 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|344212078|ref|YP_004796398.1| - 2.4e-13 49.3 41.5 1.4e-08 34.2 4.3 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|344212078|ref|YP_004796398.1| - 4e-11 42.9 25.5 1.7e-06 28.1 7.6 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344212078|ref|YP_004796398.1| - 1.6e-10 40.4 31.9 1.8e-05 24.6 2.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|344212078|ref|YP_004796398.1| - 6e-10 39.4 19.5 8.2e-05 23.0 5.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|344212078|ref|YP_004796398.1| - 2.4e-07 31.2 43.3 0.019 15.8 7.2 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344212078|ref|YP_004796398.1| - 4.2e-06 26.9 34.3 0.001 19.4 3.0 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|344212078|ref|YP_004796398.1| - 2.7e-05 24.8 14.0 0.012 16.4 0.4 3.8 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|344212078|ref|YP_004796398.1| - 4.1e-05 23.6 31.9 0.0018 18.4 2.0 3.9 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344212078|ref|YP_004796398.1| - 4.1e-05 24.0 25.2 0.031 14.8 8.1 4.0 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344212078|ref|YP_004796398.1| - 0.024 15.6 31.7 1.9 9.5 10.4 4.2 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|344212078|ref|YP_004796398.1| - 0.024 15.2 1.2 0.024 15.2 1.2 3.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|344212078|ref|YP_004796398.1| - 0.78 9.5 25.3 0.87 9.4 4.6 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.22 gi|344212079|ref|YP_004796399.1| - 1.5e-56 192.2 0.0 2.7e-56 191.4 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344212079|ref|YP_004796399.1| - 3.2e-24 85.1 0.1 6.9e-24 84.0 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|344212079|ref|YP_004796399.1| - 1.1e-12 47.8 1.1 2.6e-12 46.6 1.1 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|344212079|ref|YP_004796399.1| - 0.0055 16.5 2.5 0.0055 16.5 2.5 1.7 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Molybdopterin_N PF18364.1 gi|344212079|ref|YP_004796399.1| - 6.1 7.0 6.8 1.2 9.2 0.1 3.2 4 0 0 4 4 4 0 Molybdopterin oxidoreductase N-terminal domain Ferredoxin_N PF16947.5 gi|344212080|ref|YP_004796400.1| - 1.3e-33 114.9 2.5 1.6e-33 114.6 2.5 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding HTH_10 PF04967.12 gi|344212081|ref|YP_004796401.1| - 3e-18 65.4 0.6 5.5e-18 64.5 0.6 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344212081|ref|YP_004796401.1| - 0.00055 19.9 2.7 0.00082 19.3 2.7 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|344212081|ref|YP_004796401.1| - 0.002 18.0 0.4 0.014 15.3 0.1 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_1_2 PF13022.6 gi|344212081|ref|YP_004796401.1| - 0.0044 17.2 0.1 0.0079 16.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_20 PF12840.7 gi|344212081|ref|YP_004796401.1| - 0.013 15.6 0.0 0.031 14.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|344212081|ref|YP_004796401.1| - 0.021 14.4 0.0 0.073 12.6 0.0 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|344212081|ref|YP_004796401.1| - 0.021 14.4 0.1 0.061 12.9 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PuR_N PF09182.10 gi|344212081|ref|YP_004796401.1| - 0.022 14.7 0.1 0.96 9.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal HTH_1 PF00126.27 gi|344212081|ref|YP_004796401.1| - 0.073 13.0 0.6 0.17 11.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_5 PF01022.20 gi|344212081|ref|YP_004796401.1| - 0.078 12.9 0.1 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4250 PF14056.6 gi|344212081|ref|YP_004796401.1| - 0.08 12.9 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) HTH_3 PF01381.22 gi|344212081|ref|YP_004796401.1| - 0.097 12.7 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_11 PF08279.12 gi|344212081|ref|YP_004796401.1| - 0.13 12.3 0.1 0.26 11.2 0.1 1.5 1 0 0 1 1 1 0 HTH domain BatA PF07584.11 gi|344212082|ref|YP_004796402.1| - 4.8e-17 62.1 7.9 9.5e-17 61.1 7.9 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|344212082|ref|YP_004796402.1| - 9.1e-07 29.5 0.3 2.1e-06 28.4 0.3 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF58 PF01882.18 gi|344212082|ref|YP_004796402.1| - 0.016 15.5 0.4 0.049 13.9 0.4 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF58 DUF898 PF05987.13 gi|344212082|ref|YP_004796402.1| - 0.025 13.7 0.3 0.042 12.9 0.3 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) VWA PF00092.28 gi|344212083|ref|YP_004796403.1| - 2.7e-20 73.3 0.4 6.6e-18 65.6 0.0 2.6 2 1 0 2 2 2 2 von Willebrand factor type A domain VWA_2 PF13519.6 gi|344212083|ref|YP_004796403.1| - 1.2e-15 58.1 0.9 2.9e-15 56.8 0.1 2.1 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|344212083|ref|YP_004796403.1| - 2.7e-08 33.9 0.0 8.2e-08 32.3 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|344212083|ref|YP_004796403.1| - 7.8e-07 28.7 0.9 5.2e-05 22.7 0.0 2.9 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein Big_3_5 PF16640.5 gi|344212083|ref|YP_004796403.1| - 9.4e-05 22.5 0.3 9.4e-05 22.5 0.3 3.8 4 0 0 4 4 4 1 Bacterial Ig-like domain (group 3) DUF1772 PF08592.11 gi|344212083|ref|YP_004796403.1| - 0.11 12.9 0.1 0.89 9.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1772) PKD PF00801.20 gi|344212083|ref|YP_004796403.1| - 0.15 12.0 1.5 9.6 6.1 0.0 3.6 4 0 0 4 4 4 0 PKD domain FlaC_arch PF05377.11 gi|344212084|ref|YP_004796404.1| - 2.8e-11 43.6 31.9 0.00046 20.5 2.1 5.1 3 1 2 5 5 5 3 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|344212084|ref|YP_004796404.1| - 4.3e-11 42.9 16.2 1.3e-07 31.7 4.1 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DivIC PF04977.15 gi|344212084|ref|YP_004796404.1| - 2.1e-09 37.0 32.3 0.0036 17.0 3.9 5.5 1 1 5 6 6 6 3 Septum formation initiator CENP-F_leu_zip PF10473.9 gi|344212084|ref|YP_004796404.1| - 3.7e-09 36.7 35.0 1.4e-05 25.2 10.9 2.5 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|344212084|ref|YP_004796404.1| - 4.3e-09 36.9 38.9 4.7e-06 27.0 28.7 2.1 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) BLOC1_2 PF10046.9 gi|344212084|ref|YP_004796404.1| - 8.6e-09 35.6 24.8 0.00032 20.9 5.9 3.5 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 TolA_bind_tri PF16331.5 gi|344212084|ref|YP_004796404.1| - 1.1e-08 35.0 36.1 0.00035 20.6 5.4 3.7 1 1 3 4 4 4 3 TolA binding protein trimerisation ZapB PF06005.12 gi|344212084|ref|YP_004796404.1| - 1.2e-08 35.3 36.9 0.00039 20.8 3.1 4.1 1 1 3 4 4 4 2 Cell division protein ZapB ADIP PF11559.8 gi|344212084|ref|YP_004796404.1| - 1.3e-08 35.1 29.2 7.7e-06 26.1 5.4 2.3 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.8 gi|344212084|ref|YP_004796404.1| - 1.5e-08 34.5 34.7 3e-06 27.1 5.1 4.1 1 1 3 4 4 4 2 TATA element modulatory factor 1 DNA binding TPR_MLP1_2 PF07926.12 gi|344212084|ref|YP_004796404.1| - 2.4e-08 34.1 34.0 3.9e-05 23.7 23.4 3.0 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Tropomyosin_1 PF12718.7 gi|344212084|ref|YP_004796404.1| - 3.3e-08 33.8 39.0 1.2e-05 25.5 22.9 3.0 1 1 1 2 2 2 2 Tropomyosin like PspA_IM30 PF04012.12 gi|344212084|ref|YP_004796404.1| - 3.4e-08 33.3 20.6 0.0087 15.7 0.5 3.4 1 1 2 3 3 3 3 PspA/IM30 family Spc7 PF08317.11 gi|344212084|ref|YP_004796404.1| - 3.9e-08 32.5 31.2 2.1e-05 23.5 18.2 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein bZIP_1 PF00170.21 gi|344212084|ref|YP_004796404.1| - 5.9e-08 32.7 26.3 0.019 15.0 1.1 5.2 1 1 3 5 5 5 3 bZIP transcription factor Tropomyosin PF00261.20 gi|344212084|ref|YP_004796404.1| - 1.4e-07 31.1 28.7 2.3e-07 30.5 28.6 1.5 1 1 0 1 1 1 1 Tropomyosin AAA_13 PF13166.6 gi|344212084|ref|YP_004796404.1| - 1.5e-07 30.5 13.7 2.3e-07 29.9 13.7 1.2 1 0 0 1 1 1 1 AAA domain HemX PF04375.14 gi|344212084|ref|YP_004796404.1| - 2.9e-07 30.1 18.4 0.00015 21.2 9.5 2.3 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase APG6_N PF17675.1 gi|344212084|ref|YP_004796404.1| - 3e-07 31.0 29.5 1.3e-06 29.0 21.0 3.0 1 1 2 3 3 3 2 Apg6 coiled-coil region GAS PF13851.6 gi|344212084|ref|YP_004796404.1| - 3.4e-07 29.8 24.8 0.00032 20.1 14.7 2.4 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding MAD PF05557.13 gi|344212084|ref|YP_004796404.1| - 3.4e-07 29.0 26.4 4.5e-07 28.7 26.4 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein XhlA PF10779.9 gi|344212084|ref|YP_004796404.1| - 4.4e-07 30.0 25.7 0.0047 17.1 3.7 3.7 1 1 1 3 3 3 2 Haemolysin XhlA DUF5082 PF16888.5 gi|344212084|ref|YP_004796404.1| - 4.5e-07 30.2 22.4 1.6e-06 28.4 11.8 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF5082) DUF4201 PF13870.6 gi|344212084|ref|YP_004796404.1| - 6.8e-07 29.2 19.8 4e-06 26.7 12.0 3.0 1 1 2 3 3 3 2 Domain of unknown function (DUF4201) ERM PF00769.19 gi|344212084|ref|YP_004796404.1| - 7.7e-07 29.2 12.5 7.7e-07 29.2 12.5 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family HrpB7 PF09486.10 gi|344212084|ref|YP_004796404.1| - 9e-07 29.4 24.5 0.00099 19.5 11.8 3.0 1 1 1 2 2 2 2 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.9 gi|344212084|ref|YP_004796404.1| - 1.4e-06 27.7 21.5 8.9e-05 21.7 9.2 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 Lebercilin PF15619.6 gi|344212084|ref|YP_004796404.1| - 1.4e-06 28.1 30.7 9.6e-05 22.1 23.9 2.1 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease UPF0242 PF06785.11 gi|344212084|ref|YP_004796404.1| - 1.5e-06 28.5 28.7 0.00013 22.2 17.5 2.3 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0242) N-terminus AIP3 PF03915.13 gi|344212084|ref|YP_004796404.1| - 1.5e-06 27.5 15.3 2e-06 27.2 15.3 1.0 1 0 0 1 1 1 1 Actin interacting protein 3 Mod_r PF07200.13 gi|344212084|ref|YP_004796404.1| - 2e-06 28.0 26.2 0.00026 21.1 3.3 3.1 1 1 2 3 3 3 3 Modifier of rudimentary (Mod(r)) protein HMMR_N PF15905.5 gi|344212084|ref|YP_004796404.1| - 2e-06 27.5 22.5 2e-06 27.5 22.5 1.6 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Ax_dynein_light PF10211.9 gi|344212084|ref|YP_004796404.1| - 2.1e-06 27.8 27.1 0.015 15.2 2.1 3.4 1 1 3 4 4 4 4 Axonemal dynein light chain MscS_porin PF12795.7 gi|344212084|ref|YP_004796404.1| - 2.3e-06 27.4 36.8 0.0012 18.4 5.6 2.0 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain Uso1_p115_C PF04871.13 gi|344212084|ref|YP_004796404.1| - 2.5e-06 27.9 32.8 0.00072 19.9 28.1 3.0 1 1 1 2 2 2 2 Uso1 / p115 like vesicle tethering protein, C terminal region Laminin_II PF06009.12 gi|344212084|ref|YP_004796404.1| - 3.1e-06 27.2 21.2 0.0016 18.5 11.3 2.8 1 1 2 3 3 3 3 Laminin Domain II Shugoshin_N PF07558.11 gi|344212084|ref|YP_004796404.1| - 3.5e-06 26.8 13.4 0.019 14.8 0.9 4.3 4 0 0 4 4 3 1 Shugoshin N-terminal coiled-coil region bZIP_2 PF07716.15 gi|344212084|ref|YP_004796404.1| - 4.8e-06 26.5 31.4 0.035 14.2 0.7 6.1 2 1 5 7 7 6 2 Basic region leucine zipper DUF2205 PF10224.9 gi|344212084|ref|YP_004796404.1| - 4.9e-06 26.4 3.1 4.9e-06 26.4 3.1 3.8 1 1 2 3 3 3 1 Short coiled-coil protein DUF3450 PF11932.8 gi|344212084|ref|YP_004796404.1| - 5.2e-06 25.9 26.0 0.00053 19.4 6.0 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) YabA PF06156.13 gi|344212084|ref|YP_004796404.1| - 6.7e-06 26.7 24.3 0.035 14.7 3.4 3.9 1 1 2 3 3 3 2 Initiation control protein YabA WXG100 PF06013.12 gi|344212084|ref|YP_004796404.1| - 6.9e-06 26.2 17.4 0.48 10.7 0.1 4.8 1 1 4 6 6 6 1 Proteins of 100 residues with WXG MAP65_ASE1 PF03999.12 gi|344212084|ref|YP_004796404.1| - 8.1e-06 24.8 16.3 1e-05 24.5 16.3 1.0 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) TMPIT PF07851.13 gi|344212084|ref|YP_004796404.1| - 8.4e-06 25.3 13.9 0.006 15.9 0.7 2.1 2 0 0 2 2 2 2 TMPIT-like protein IFT57 PF10498.9 gi|344212084|ref|YP_004796404.1| - 8.4e-06 25.0 21.4 6.3e-05 22.1 12.8 2.0 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 Fez1 PF06818.15 gi|344212084|ref|YP_004796404.1| - 1.1e-05 26.0 26.4 0.0015 19.0 13.5 2.4 1 1 1 2 2 2 2 Fez1 FPP PF05911.11 gi|344212084|ref|YP_004796404.1| - 1.7e-05 23.3 28.1 0.0005 18.4 28.7 2.1 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil DUF4200 PF13863.6 gi|344212084|ref|YP_004796404.1| - 1.9e-05 25.0 24.0 0.00022 21.6 12.0 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4200) DUF16 PF01519.16 gi|344212084|ref|YP_004796404.1| - 2.1e-05 24.9 20.4 0.0067 16.9 2.9 3.0 1 1 2 3 3 3 3 Protein of unknown function DUF16 Filament PF00038.21 gi|344212084|ref|YP_004796404.1| - 2.5e-05 24.0 28.9 0.05 13.2 4.4 2.9 1 1 2 3 3 3 2 Intermediate filament protein Fib_alpha PF08702.10 gi|344212084|ref|YP_004796404.1| - 2.6e-05 24.5 20.6 0.015 15.5 11.3 2.1 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family EzrA PF06160.12 gi|344212084|ref|YP_004796404.1| - 3.1e-05 22.4 23.6 0.0029 15.9 7.4 1.7 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA NPV_P10 PF05531.12 gi|344212084|ref|YP_004796404.1| - 3.5e-05 24.2 23.2 0.12 12.8 1.7 3.9 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein TMF_TATA_bd PF12325.8 gi|344212084|ref|YP_004796404.1| - 3.7e-05 23.9 33.0 0.024 14.9 9.1 3.5 1 1 1 2 2 2 2 TATA element modulatory factor 1 TATA binding TSC22 PF01166.18 gi|344212084|ref|YP_004796404.1| - 3.7e-05 23.9 30.8 0.0022 18.3 1.8 4.8 2 2 3 5 5 4 2 TSC-22/dip/bun family DUF3584 PF12128.8 gi|344212084|ref|YP_004796404.1| - 3.9e-05 21.4 24.8 7.1e-05 20.6 24.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Phage_GP20 PF06810.11 gi|344212084|ref|YP_004796404.1| - 4e-05 23.5 28.5 0.00063 19.6 4.8 3.6 1 1 3 4 4 4 2 Phage minor structural protein GP20 Prefoldin_2 PF01920.20 gi|344212084|ref|YP_004796404.1| - 5.2e-05 23.2 30.4 0.025 14.5 0.8 4.2 1 1 1 3 3 3 2 Prefoldin subunit Laminin_I PF06008.14 gi|344212084|ref|YP_004796404.1| - 5.7e-05 23.0 3.6 5.7e-05 23.0 3.6 2.4 1 1 1 2 2 2 1 Laminin Domain I DUF641 PF04859.12 gi|344212084|ref|YP_004796404.1| - 6.7e-05 23.2 19.5 0.036 14.4 7.0 3.1 1 1 2 3 3 3 1 Plant protein of unknown function (DUF641) DUF724 PF05266.14 gi|344212084|ref|YP_004796404.1| - 7.1e-05 22.7 3.6 7.1e-05 22.7 3.6 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF724) KASH_CCD PF14662.6 gi|344212084|ref|YP_004796404.1| - 9.1e-05 22.4 32.4 0.0008 19.3 32.4 2.2 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH HSBP1 PF06825.12 gi|344212084|ref|YP_004796404.1| - 9.8e-05 22.1 18.5 0.0065 16.3 1.7 4.6 2 1 2 4 4 4 1 Heat shock factor binding protein 1 DUF4618 PF15397.6 gi|344212084|ref|YP_004796404.1| - 0.00011 21.8 21.2 0.04 13.3 0.5 3.2 1 1 2 3 3 3 1 Domain of unknown function (DUF4618) TACC_C PF05010.14 gi|344212084|ref|YP_004796404.1| - 0.00011 22.1 19.9 0.00068 19.5 6.4 2.2 1 1 1 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Myosin_tail_1 PF01576.19 gi|344212084|ref|YP_004796404.1| - 0.00015 19.8 16.5 0.00015 19.8 16.5 2.1 1 1 1 2 2 2 1 Myosin tail Syntaxin-6_N PF09177.11 gi|344212084|ref|YP_004796404.1| - 0.00015 22.3 28.8 0.031 14.8 6.6 3.5 1 1 2 3 3 3 2 Syntaxin 6, N-terminal Swi5 PF07061.11 gi|344212084|ref|YP_004796404.1| - 0.00021 21.3 22.9 0.31 11.2 2.8 4.2 1 1 3 4 4 4 2 Swi5 DUF4407 PF14362.6 gi|344212084|ref|YP_004796404.1| - 0.00024 20.5 25.0 0.058 12.7 17.8 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) Prefoldin PF02996.17 gi|344212084|ref|YP_004796404.1| - 0.00026 20.9 26.3 0.039 13.9 0.8 5.0 1 1 4 5 5 5 1 Prefoldin subunit HOOK PF05622.12 gi|344212084|ref|YP_004796404.1| - 0.00027 19.2 30.5 0.0085 14.3 17.8 2.1 1 1 1 2 2 2 2 HOOK protein RmuC PF02646.16 gi|344212084|ref|YP_004796404.1| - 0.00032 19.9 15.6 0.14 11.3 0.4 3.2 1 1 2 3 3 3 2 RmuC family BRE1 PF08647.11 gi|344212084|ref|YP_004796404.1| - 0.00038 20.5 1.6 0.00038 20.5 1.6 3.1 1 1 2 3 3 2 1 BRE1 E3 ubiquitin ligase Tektin PF03148.14 gi|344212084|ref|YP_004796404.1| - 0.00038 19.3 31.2 0.092 11.5 2.5 3.0 1 1 2 3 3 3 2 Tektin family DUF812 PF05667.11 gi|344212084|ref|YP_004796404.1| - 0.00038 19.5 27.9 0.084 11.7 2.1 2.7 1 1 2 3 3 3 3 Protein of unknown function (DUF812) FliD_C PF07195.12 gi|344212084|ref|YP_004796404.1| - 0.00041 19.9 15.4 0.029 13.8 3.5 3.0 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus Spc24 PF08286.11 gi|344212084|ref|YP_004796404.1| - 0.00042 20.5 35.0 0.03 14.5 5.3 4.2 1 1 3 4 4 4 2 Spc24 subunit of Ndc80 zf-C4H2 PF10146.9 gi|344212084|ref|YP_004796404.1| - 0.00044 20.6 23.1 0.074 13.4 6.4 2.0 1 1 1 2 2 2 2 Zinc finger-containing protein COG2 PF06148.11 gi|344212084|ref|YP_004796404.1| - 0.00047 20.2 18.5 0.2 11.8 3.3 3.4 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 LPP PF04728.13 gi|344212084|ref|YP_004796404.1| - 0.00047 20.5 21.1 0.062 13.7 2.1 5.1 2 2 2 5 5 5 1 Lipoprotein leucine-zipper DUF948 PF06103.11 gi|344212084|ref|YP_004796404.1| - 0.0005 20.3 17.4 0.27 11.5 5.4 3.5 1 1 3 4 4 4 2 Bacterial protein of unknown function (DUF948) Cnn_1N PF07989.11 gi|344212084|ref|YP_004796404.1| - 0.00053 20.1 31.2 0.049 13.8 3.9 4.7 1 1 3 4 4 4 2 Centrosomin N-terminal motif 1 Leu_zip PF15294.6 gi|344212084|ref|YP_004796404.1| - 0.00054 19.6 23.3 0.018 14.6 6.2 2.1 1 1 1 2 2 2 2 Leucine zipper APG17 PF04108.12 gi|344212084|ref|YP_004796404.1| - 0.0006 19.0 18.0 0.00088 18.5 18.0 1.2 1 0 0 1 1 1 1 Autophagy protein Apg17 CALCOCO1 PF07888.11 gi|344212084|ref|YP_004796404.1| - 0.00063 18.7 32.3 0.0013 17.7 32.3 1.4 1 1 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like HAUS-augmin3 PF14932.6 gi|344212084|ref|YP_004796404.1| - 0.00068 19.3 25.3 0.0053 16.4 9.1 2.3 1 1 1 2 2 2 1 HAUS augmin-like complex subunit 3 DUF4988 PF16378.5 gi|344212084|ref|YP_004796404.1| - 0.00069 19.3 11.5 0.003 17.2 0.2 3.4 2 1 1 3 3 3 1 Domain of unknown function DUF2730 PF10805.8 gi|344212084|ref|YP_004796404.1| - 0.00082 19.4 17.9 0.065 13.3 1.9 3.5 1 1 2 3 3 3 1 Protein of unknown function (DUF2730) Seryl_tRNA_N PF02403.22 gi|344212084|ref|YP_004796404.1| - 0.001 19.3 23.8 0.0048 17.1 6.2 2.8 1 1 2 3 3 3 2 Seryl-tRNA synthetase N-terminal domain CCDC144C PF14915.6 gi|344212084|ref|YP_004796404.1| - 0.0013 17.9 27.3 0.02 14.0 21.5 2.2 1 1 1 2 2 2 2 CCDC144C protein coiled-coil region ABC_tran_CTD PF16326.5 gi|344212084|ref|YP_004796404.1| - 0.0014 18.8 31.4 0.07 13.4 5.8 4.7 1 1 2 4 4 4 2 ABC transporter C-terminal domain BST2 PF16716.5 gi|344212084|ref|YP_004796404.1| - 0.0017 18.9 26.1 0.073 13.7 4.3 4.1 1 1 3 4 4 4 1 Bone marrow stromal antigen 2 OEP PF02321.18 gi|344212084|ref|YP_004796404.1| - 0.0018 18.1 14.6 0.0038 17.0 6.7 2.1 2 0 0 2 2 2 1 Outer membrane efflux protein CC2-LZ PF16516.5 gi|344212084|ref|YP_004796404.1| - 0.0021 18.4 23.0 0.77 10.2 2.8 3.9 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator JIP_LZII PF16471.5 gi|344212084|ref|YP_004796404.1| - 0.0022 18.1 35.6 0.0096 16.1 8.6 4.2 1 1 2 3 3 3 1 JNK-interacting protein leucine zipper II Jnk-SapK_ap_N PF09744.9 gi|344212084|ref|YP_004796404.1| - 0.0023 18.2 33.5 0.0042 17.3 7.4 2.7 1 1 2 3 3 3 1 JNK_SAPK-associated protein-1 Snapin_Pallidin PF14712.6 gi|344212084|ref|YP_004796404.1| - 0.0024 18.3 24.0 1.2 9.6 6.9 4.1 1 1 4 5 5 5 0 Snapin/Pallidin Exonuc_VII_L PF02601.15 gi|344212084|ref|YP_004796404.1| - 0.0024 17.5 18.8 0.017 14.7 18.8 1.9 1 1 0 1 1 1 1 Exonuclease VII, large subunit DUF4795 PF16043.5 gi|344212084|ref|YP_004796404.1| - 0.0026 17.4 21.5 0.014 15.0 5.6 2.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4795) DUF745 PF05335.13 gi|344212084|ref|YP_004796404.1| - 0.0036 17.1 17.1 0.0042 16.8 11.2 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF745) DUF2968 PF11180.8 gi|344212084|ref|YP_004796404.1| - 0.0038 16.9 26.7 0.38 10.4 0.1 3.7 1 1 3 4 4 4 1 Protein of unknown function (DUF2968) DivIVA PF05103.13 gi|344212084|ref|YP_004796404.1| - 0.0047 17.0 23.2 0.017 15.2 10.7 2.9 1 1 2 3 3 3 1 DivIVA protein DUF4686 PF15742.5 gi|344212084|ref|YP_004796404.1| - 0.0048 16.1 30.7 0.016 14.3 30.7 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4686) EMP24_GP25L PF01105.24 gi|344212084|ref|YP_004796404.1| - 0.0049 16.8 3.5 0.0049 16.8 3.5 3.6 1 1 1 2 2 1 1 emp24/gp25L/p24 family/GOLD Golgin_A5 PF09787.9 gi|344212084|ref|YP_004796404.1| - 0.005 16.3 33.9 0.025 14.0 9.6 2.1 1 1 1 2 2 2 1 Golgin subfamily A member 5 TssO PF17561.2 gi|344212084|ref|YP_004796404.1| - 0.0054 16.8 6.1 0.43 10.7 1.3 2.9 1 1 2 3 3 3 1 Type VI secretion system, TssO GrpE PF01025.19 gi|344212084|ref|YP_004796404.1| - 0.0058 16.3 26.6 0.0087 15.7 0.9 3.8 1 1 2 3 3 3 1 GrpE Taxilin PF09728.9 gi|344212084|ref|YP_004796404.1| - 0.0063 15.7 22.7 0.023 13.9 14.8 2.4 1 1 1 2 2 2 1 Myosin-like coiled-coil protein KxDL PF10241.9 gi|344212084|ref|YP_004796404.1| - 0.0067 16.7 17.6 0.91 9.8 5.2 3.7 1 1 2 3 3 3 0 Uncharacterized conserved protein DHR10 PF18595.1 gi|344212084|ref|YP_004796404.1| - 0.0077 16.3 36.7 0.47 10.5 12.3 3.6 1 1 2 3 3 3 1 Designed helical repeat protein 10 domain SHE3 PF17078.5 gi|344212084|ref|YP_004796404.1| - 0.0094 15.7 25.7 0.11 12.2 25.7 2.2 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 DUF4763 PF15960.5 gi|344212084|ref|YP_004796404.1| - 0.01 15.2 24.1 0.1 11.9 18.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) DUF2959 PF11172.8 gi|344212084|ref|YP_004796404.1| - 0.011 15.9 17.8 0.24 11.5 0.9 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) Sec2p PF06428.11 gi|344212084|ref|YP_004796404.1| - 0.011 15.7 31.8 0.2 11.6 5.5 3.7 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p DUF3552 PF12072.8 gi|344212084|ref|YP_004796404.1| - 0.011 15.1 17.1 0.011 15.1 17.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) FapA PF03961.13 gi|344212084|ref|YP_004796404.1| - 0.012 14.2 19.9 0.035 12.7 3.3 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A MctB PF11382.8 gi|344212084|ref|YP_004796404.1| - 0.012 15.3 2.6 0.012 15.3 2.6 4.6 1 1 3 4 4 4 0 Copper transport outer membrane protein, MctB CENP-H PF05837.12 gi|344212084|ref|YP_004796404.1| - 0.012 16.0 27.0 0.26 11.7 1.5 3.3 1 1 2 3 3 3 0 Centromere protein H (CENP-H) Fungal_TACC PF12709.7 gi|344212084|ref|YP_004796404.1| - 0.013 15.9 23.3 1.5 9.3 0.2 5.3 1 1 5 6 6 6 0 Fungal Transforming acidic coiled-coil (TACC) proteins Prominin PF05478.11 gi|344212084|ref|YP_004796404.1| - 0.013 13.5 15.0 0.035 12.1 7.1 2.5 1 1 0 1 1 1 0 Prominin DUF2353 PF09789.9 gi|344212084|ref|YP_004796404.1| - 0.014 14.8 28.1 0.049 13.0 22.0 2.5 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) DUF4094 PF13334.6 gi|344212084|ref|YP_004796404.1| - 0.014 15.8 0.9 0.014 15.8 0.9 3.1 1 1 1 2 2 1 0 Domain of unknown function (DUF4094) GOLGA2L5 PF15070.6 gi|344212084|ref|YP_004796404.1| - 0.017 13.8 22.7 0.064 11.9 4.5 2.6 1 1 1 2 2 2 0 Putative golgin subfamily A member 2-like protein 5 SlyX PF04102.12 gi|344212084|ref|YP_004796404.1| - 0.017 15.7 6.7 0.017 15.7 6.7 4.0 1 1 3 4 4 4 0 SlyX MCPsignal PF00015.21 gi|344212084|ref|YP_004796404.1| - 0.018 14.9 10.0 0.036 13.9 4.4 2.5 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain CLZ PF16526.5 gi|344212084|ref|YP_004796404.1| - 0.019 15.3 29.9 0.21 12.0 3.9 4.5 1 1 3 4 4 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Cob_adeno_trans PF01923.18 gi|344212084|ref|YP_004796404.1| - 0.019 15.1 1.7 0.019 15.1 1.7 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase PI3K_P85_iSH2 PF16454.5 gi|344212084|ref|YP_004796404.1| - 0.02 14.5 23.7 0.15 11.6 17.9 3.5 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Macoilin PF09726.9 gi|344212084|ref|YP_004796404.1| - 0.021 13.4 25.4 0.041 12.4 25.4 1.4 1 1 0 1 1 1 0 Macoilin family DUF1640 PF07798.11 gi|344212084|ref|YP_004796404.1| - 0.022 14.8 27.0 0.53 10.3 17.7 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Lectin_N PF03954.14 gi|344212084|ref|YP_004796404.1| - 0.022 14.5 17.0 0.65 9.8 9.3 2.8 2 1 0 2 2 2 0 Hepatic lectin, N-terminal domain Cep57_CLD_2 PF14197.6 gi|344212084|ref|YP_004796404.1| - 0.023 14.8 8.1 0.023 14.8 8.1 4.5 1 1 3 4 4 3 0 Centrosome localisation domain of PPC89 DUF4140 PF13600.6 gi|344212084|ref|YP_004796404.1| - 0.025 15.0 32.4 1.8e+04 -11.3 32.4 4.7 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) OrfB_IS605 PF01385.19 gi|344212084|ref|YP_004796404.1| - 0.027 14.7 0.7 0.027 14.7 0.7 1.9 2 1 0 2 2 1 0 Probable transposase FmiP_Thoc5 PF09766.9 gi|344212084|ref|YP_004796404.1| - 0.029 13.7 18.7 0.16 11.2 2.2 2.8 1 1 2 3 3 3 0 Fms-interacting protein/Thoc5 DUF4472 PF14739.6 gi|344212084|ref|YP_004796404.1| - 0.031 15.0 23.9 0.46 11.2 7.2 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4472) Cep57_MT_bd PF06657.13 gi|344212084|ref|YP_004796404.1| - 0.034 14.6 22.8 0.29 11.6 5.2 3.8 1 1 3 4 4 4 0 Centrosome microtubule-binding domain of Cep57 Sec34 PF04136.15 gi|344212084|ref|YP_004796404.1| - 0.035 14.0 21.8 0.28 11.0 2.5 3.2 1 1 2 3 3 3 0 Sec34-like family T3SSipB PF16535.5 gi|344212084|ref|YP_004796404.1| - 0.035 14.6 10.8 0.45 11.0 3.9 2.4 1 1 1 2 2 2 0 Type III cell invasion protein SipB Bacillus_HBL PF05791.11 gi|344212084|ref|YP_004796404.1| - 0.038 13.8 18.3 0.2 11.5 4.1 2.8 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Tho2 PF11262.8 gi|344212084|ref|YP_004796404.1| - 0.039 13.2 17.7 0.32 10.2 2.3 2.2 1 1 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 COG5 PF10392.9 gi|344212084|ref|YP_004796404.1| - 0.04 14.1 11.2 1.1 9.5 0.3 2.8 1 1 2 3 3 3 0 Golgi transport complex subunit 5 HIP1_clath_bdg PF16515.5 gi|344212084|ref|YP_004796404.1| - 0.054 14.1 30.2 2.4 8.8 18.1 3.2 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DASH_Hsk3 PF08227.11 gi|344212084|ref|YP_004796404.1| - 0.059 13.7 17.6 0.77 10.2 0.4 4.8 2 2 3 5 5 4 0 DASH complex subunit Hsk3 like SKA1 PF07160.12 gi|344212084|ref|YP_004796404.1| - 0.062 13.1 15.1 0.21 11.4 1.2 2.7 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 PRKG1_interact PF15898.5 gi|344212084|ref|YP_004796404.1| - 0.066 14.1 29.3 27 5.8 3.1 3.5 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Hormone_1 PF00103.20 gi|344212084|ref|YP_004796404.1| - 0.07 12.9 6.1 0.16 11.7 0.1 2.6 2 1 1 3 3 3 0 Somatotropin hormone family Fmp27_WPPW PF10359.9 gi|344212084|ref|YP_004796404.1| - 0.072 11.9 22.0 0.036 12.9 4.3 2.2 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain YkyA PF10368.9 gi|344212084|ref|YP_004796404.1| - 0.072 12.8 23.2 0.26 10.9 22.8 2.0 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Rab5-bind PF09311.11 gi|344212084|ref|YP_004796404.1| - 0.074 12.4 26.8 0.12 11.7 6.2 2.8 1 1 2 3 3 3 0 Rabaptin-like protein FH2 PF02181.23 gi|344212084|ref|YP_004796404.1| - 0.086 11.9 14.3 0.35 10.0 2.0 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain OmpH PF03938.14 gi|344212084|ref|YP_004796404.1| - 0.089 13.1 25.5 15 5.9 12.7 2.8 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) CCDC158 PF15921.5 gi|344212084|ref|YP_004796404.1| - 0.096 10.5 26.3 0.2 9.4 10.6 2.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 158 Nup54 PF13874.6 gi|344212084|ref|YP_004796404.1| - 0.097 12.8 20.7 0.26 11.4 0.8 2.5 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 DELLA PF12041.8 gi|344212084|ref|YP_004796404.1| - 0.13 12.2 2.7 0.29 11.0 0.4 2.6 2 1 0 2 2 1 0 Transcriptional regulator DELLA protein N terminal RasGAP_C PF03836.15 gi|344212084|ref|YP_004796404.1| - 0.14 12.3 20.0 1.8 8.7 0.2 3.3 1 1 2 3 3 3 0 RasGAP C-terminus Spectrin PF00435.21 gi|344212084|ref|YP_004796404.1| - 0.15 12.5 24.4 2.6 8.6 12.7 3.1 1 1 1 2 2 2 0 Spectrin repeat Uds1 PF15456.6 gi|344212084|ref|YP_004796404.1| - 0.15 12.2 24.1 20 5.4 3.2 3.6 1 1 1 2 2 2 0 Up-regulated During Septation HalX PF08663.10 gi|344212084|ref|YP_004796404.1| - 0.17 12.2 45.6 4 7.8 1.8 6.0 1 1 1 2 2 1 0 HalX domain Sipho_Gp157 PF05565.11 gi|344212084|ref|YP_004796404.1| - 0.18 11.8 19.7 1.1 9.2 5.5 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 DUF1043 PF06295.12 gi|344212084|ref|YP_004796404.1| - 0.19 11.8 16.0 0.93 9.5 9.5 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF1043) DUF4164 PF13747.6 gi|344212084|ref|YP_004796404.1| - 0.19 12.0 36.0 1.9 8.8 4.4 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) Fzo_mitofusin PF04799.13 gi|344212084|ref|YP_004796404.1| - 0.19 11.3 21.5 5 6.7 2.3 3.5 1 1 2 3 3 3 0 fzo-like conserved region Arfaptin PF06456.13 gi|344212084|ref|YP_004796404.1| - 0.19 11.3 12.0 0.13 11.9 1.7 2.1 1 1 1 2 2 2 0 Arfaptin-like domain BicD PF09730.9 gi|344212084|ref|YP_004796404.1| - 0.19 10.1 25.2 0.35 9.2 25.2 1.4 1 1 0 1 1 1 0 Microtubule-associated protein Bicaudal-D Wtap PF17098.5 gi|344212084|ref|YP_004796404.1| - 0.22 11.4 31.9 9.3 6.2 18.2 3.3 1 1 1 2 2 2 0 WTAP/Mum2p family SCO1-SenC PF02630.14 gi|344212084|ref|YP_004796404.1| - 0.24 11.3 1.7 0.49 10.3 0.4 2.0 1 1 1 2 2 1 0 SCO1/SenC DASH_Dam1 PF08653.10 gi|344212084|ref|YP_004796404.1| - 0.25 11.2 19.1 1 9.2 1.2 4.8 2 2 3 5 5 4 0 DASH complex subunit Dam1 HALZ PF02183.18 gi|344212084|ref|YP_004796404.1| - 0.26 11.5 33.2 0.35 11.1 0.6 4.8 4 1 2 6 6 4 0 Homeobox associated leucine zipper MtrB PF05440.12 gi|344212084|ref|YP_004796404.1| - 0.3 11.5 7.0 11 6.5 0.0 3.9 1 1 3 4 4 3 0 Tetrahydromethanopterin S-methyltransferase subunit B Phage_GPO PF05929.11 gi|344212084|ref|YP_004796404.1| - 0.32 10.6 19.1 3.9 7.0 5.1 2.5 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Ly49 PF08391.10 gi|344212084|ref|YP_004796404.1| - 0.32 11.3 8.2 2.1 8.7 1.0 2.3 2 0 0 2 2 2 0 Ly49-like protein, N-terminal region DUF4446 PF14584.6 gi|344212084|ref|YP_004796404.1| - 0.33 10.9 18.1 2.9 7.8 2.5 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) Pox_F11 PF04943.12 gi|344212084|ref|YP_004796404.1| - 0.34 9.9 2.3 0.41 9.7 2.3 1.1 1 0 0 1 1 1 0 Poxvirus F11 protein RTBV_P46 PF06216.11 gi|344212084|ref|YP_004796404.1| - 0.34 9.7 2.4 0.27 10.1 0.2 1.8 2 0 0 2 2 2 0 Rice tungro bacilliform virus P46 protein Occludin_ELL PF07303.13 gi|344212084|ref|YP_004796404.1| - 0.35 11.6 12.7 4.1 8.2 0.2 3.5 1 1 1 2 2 2 0 Occludin homology domain FUSC PF04632.12 gi|344212084|ref|YP_004796404.1| - 0.41 9.1 14.0 4.9 5.6 14.0 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein family FemAB PF02388.16 gi|344212084|ref|YP_004796404.1| - 0.41 9.5 17.3 0.25 10.2 1.7 2.3 1 1 2 3 3 3 0 FemAB family ApoO PF09769.9 gi|344212084|ref|YP_004796404.1| - 0.44 10.5 5.3 21 5.1 0.0 3.1 1 1 1 2 2 2 0 Apolipoprotein O CCDC106 PF15794.5 gi|344212084|ref|YP_004796404.1| - 0.47 10.1 21.2 1.1 9.0 0.5 3.8 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 106 FAM76 PF16046.5 gi|344212084|ref|YP_004796404.1| - 0.48 9.7 15.9 1.4 8.2 15.9 1.8 1 1 0 1 1 1 0 FAM76 protein STAT_alpha PF01017.20 gi|344212084|ref|YP_004796404.1| - 0.55 10.1 22.3 0.19 11.6 3.4 2.5 1 1 1 2 2 2 0 STAT protein, all-alpha domain THOC7 PF05615.13 gi|344212084|ref|YP_004796404.1| - 0.57 10.5 30.0 3.8 7.8 6.5 4.0 1 1 2 3 3 3 0 Tho complex subunit 7 CCCAP PF15964.5 gi|344212084|ref|YP_004796404.1| - 0.71 8.1 24.4 0.13 10.5 5.6 2.1 1 1 1 2 2 2 0 Centrosomal colon cancer autoantigen protein family CtIP_N PF10482.9 gi|344212084|ref|YP_004796404.1| - 0.73 9.9 28.2 0.65 10.1 14.2 3.3 1 1 2 3 3 2 0 Tumour-suppressor protein CtIP N-terminal domain DUF3829 PF12889.7 gi|344212084|ref|YP_004796404.1| - 0.74 9.2 10.4 1.7 8.0 3.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) HAP1_N PF04849.13 gi|344212084|ref|YP_004796404.1| - 0.82 8.8 34.2 4.7 6.3 11.0 2.6 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Cast PF10174.9 gi|344212084|ref|YP_004796404.1| - 0.85 7.8 30.4 4.5 5.4 30.2 1.7 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone YscO PF07321.12 gi|344212084|ref|YP_004796404.1| - 0.89 9.5 30.1 0.21 11.5 9.2 3.8 1 1 3 4 4 4 0 Type III secretion protein YscO TSNAXIP1_N PF15739.5 gi|344212084|ref|YP_004796404.1| - 0.89 10.0 22.3 0.38 11.1 2.8 3.2 1 1 3 4 4 4 0 Translin-associated factor X-interacting N-terminus DUF2935 PF11155.8 gi|344212084|ref|YP_004796404.1| - 0.91 9.9 7.2 1.1 9.6 2.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) SOGA PF11365.8 gi|344212084|ref|YP_004796404.1| - 1 10.5 22.6 0.47 11.6 3.6 3.1 1 1 1 2 2 2 0 Protein SOGA Csm1_N PF18504.1 gi|344212084|ref|YP_004796404.1| - 1.1 9.7 30.2 4.4 7.7 1.7 4.5 1 1 2 3 3 2 0 Csm1 N-terminal domain kleA_kleC PF17383.2 gi|344212084|ref|YP_004796404.1| - 1.1 9.6 19.3 19 5.7 1.5 4.7 2 2 1 3 3 3 0 Uncharacterized KorC regulated protein A KfrA_N PF11740.8 gi|344212084|ref|YP_004796404.1| - 1.1 9.9 31.0 69 4.2 5.7 4.4 1 1 1 2 2 1 0 Plasmid replication region DNA-binding N-term EIAV_Rev PF11129.8 gi|344212084|ref|YP_004796404.1| - 1.2 9.4 5.5 1.2 9.3 1.0 2.5 1 1 0 2 2 2 0 Rev protein of equine infectious anaemia virus IFT20 PF14931.6 gi|344212084|ref|YP_004796404.1| - 1.2 9.3 21.6 0.38 10.9 10.7 2.7 1 1 1 2 2 2 0 Intraflagellar transport complex B, subunit 20 V_ATPase_I PF01496.19 gi|344212084|ref|YP_004796404.1| - 1.2 7.0 21.1 0.32 8.9 3.9 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family AATF-Che1 PF13339.6 gi|344212084|ref|YP_004796404.1| - 1.2 9.8 18.2 3.4e+02 1.9 18.2 2.6 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor TEX13 PF15186.6 gi|344212084|ref|YP_004796404.1| - 1.2 8.8 18.7 1.1 8.9 0.4 3.1 1 1 1 3 3 3 0 Testis-expressed sequence 13 protein family Rootletin PF15035.6 gi|344212084|ref|YP_004796404.1| - 1.3 9.0 34.1 3.9 7.5 9.8 3.0 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Cluap1 PF10234.9 gi|344212084|ref|YP_004796404.1| - 1.3 8.4 26.1 8.7 5.7 11.6 2.7 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF2203 PF09969.9 gi|344212084|ref|YP_004796404.1| - 1.3 9.8 17.2 3.2 8.5 2.1 2.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) WEMBL PF05701.11 gi|344212084|ref|YP_004796404.1| - 1.3 7.6 24.8 4.1 6.0 24.8 1.5 1 1 0 1 1 1 0 Weak chloroplast movement under blue light CEP63 PF17045.5 gi|344212084|ref|YP_004796404.1| - 1.5 8.7 27.2 4.7 7.0 21.9 2.6 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa Cep57_CLD PF14073.6 gi|344212084|ref|YP_004796404.1| - 1.5 8.8 27.3 2.4 8.2 21.3 2.0 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 SPATA24 PF15175.6 gi|344212084|ref|YP_004796404.1| - 1.6 8.6 18.7 2.6 7.9 4.1 2.1 1 1 1 2 2 2 0 Spermatogenesis-associated protein 24 P4Ha_N PF08336.11 gi|344212084|ref|YP_004796404.1| - 1.6 8.7 15.3 2.1 8.4 0.4 3.5 1 1 2 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Osmo_CC PF08946.10 gi|344212084|ref|YP_004796404.1| - 1.8 8.9 25.3 0.86 9.9 2.6 4.2 2 1 3 5 5 4 0 Osmosensory transporter coiled coil COG6 PF06419.11 gi|344212084|ref|YP_004796404.1| - 2 6.5 22.4 0.5 8.5 0.9 3.0 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 BORCS7 PF16088.5 gi|344212084|ref|YP_004796404.1| - 2.1 8.7 8.9 4.3 7.7 3.4 3.1 1 1 2 3 3 3 0 BLOC-1-related complex sub-unit 7 PMEI PF04043.15 gi|344212084|ref|YP_004796404.1| - 2.1 8.7 11.6 1.5e+02 2.7 10.5 2.8 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor DUF1465 PF07323.12 gi|344212084|ref|YP_004796404.1| - 2.3 8.1 18.5 0.3 10.9 4.4 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1465) CorA PF01544.18 gi|344212084|ref|YP_004796404.1| - 2.5 7.3 24.2 1.8 7.8 15.5 2.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF730 PF05325.11 gi|344212084|ref|YP_004796404.1| - 2.6 8.1 5.3 8.6 6.4 0.7 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF730) ISG65-75 PF11727.8 gi|344212084|ref|YP_004796404.1| - 2.8 7.1 12.9 5.4 6.2 3.9 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein RPW8 PF05659.11 gi|344212084|ref|YP_004796404.1| - 3.1 7.5 12.4 6.4 6.5 1.2 3.3 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF5320 PF17253.2 gi|344212084|ref|YP_004796404.1| - 3.3 8.8 17.5 5.7 8.1 0.5 4.7 1 1 3 4 4 3 0 Family of unknown function (DUF5320) Med9 PF07544.13 gi|344212084|ref|YP_004796404.1| - 3.3 7.9 25.3 2.6 8.2 4.1 3.5 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 LMBR1 PF04791.16 gi|344212084|ref|YP_004796404.1| - 3.4 6.5 14.3 12 4.6 14.2 1.7 1 1 0 1 1 1 0 LMBR1-like membrane protein DUF1192 PF06698.11 gi|344212084|ref|YP_004796404.1| - 3.5 7.8 24.0 0.65 10.1 0.8 4.9 2 2 3 5 5 4 0 Protein of unknown function (DUF1192) DUF3053 PF11254.8 gi|344212084|ref|YP_004796404.1| - 3.5 7.2 16.3 8.7 5.9 4.2 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3053) FliD_N PF02465.18 gi|344212084|ref|YP_004796404.1| - 3.6 8.3 11.5 4.2e+03 -1.5 11.6 3.5 1 1 0 1 1 0 0 Flagellar hook-associated protein 2 N-terminus DUF4972 PF16342.5 gi|344212084|ref|YP_004796404.1| - 3.7 7.3 12.3 9.7 5.9 3.2 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4972) Rho_Binding PF08912.11 gi|344212084|ref|YP_004796404.1| - 3.9 8.4 30.2 55 4.7 8.7 4.6 1 1 2 3 3 3 0 Rho Binding HAUS6_N PF14661.6 gi|344212084|ref|YP_004796404.1| - 4 7.0 18.9 9.5e+03 -4.1 18.9 2.8 1 1 0 1 1 0 0 HAUS augmin-like complex subunit 6 N-terminus bZIP_Maf PF03131.17 gi|344212084|ref|YP_004796404.1| - 4 8.0 27.2 20 5.8 0.6 4.5 1 1 2 4 4 4 0 bZIP Maf transcription factor dCache_2 PF08269.11 gi|344212084|ref|YP_004796404.1| - 4.5 6.4 12.9 2.6 7.1 0.4 2.2 2 0 0 2 2 2 0 Cache domain KLRAQ PF10205.9 gi|344212084|ref|YP_004796404.1| - 4.7 7.5 25.3 0.87 9.9 4.8 3.3 1 1 2 3 3 3 0 Predicted coiled-coil domain-containing protein USP8_interact PF08941.10 gi|344212084|ref|YP_004796404.1| - 4.8 6.9 13.2 3.9 7.3 0.3 2.9 1 1 1 2 2 2 0 USP8 interacting Nnf1 PF03980.14 gi|344212084|ref|YP_004796404.1| - 4.9 7.6 32.4 1.7 9.1 0.8 4.8 1 1 2 3 3 2 0 Nnf1 Troponin PF00992.20 gi|344212084|ref|YP_004796404.1| - 5.1 7.4 28.2 0.18 12.1 7.9 3.1 1 1 2 3 3 3 0 Troponin Yuri_gagarin PF15934.5 gi|344212084|ref|YP_004796404.1| - 5.3 6.8 22.9 8.2 6.2 11.4 2.3 1 1 1 2 2 2 0 Yuri gagarin TraF_2 PF13729.6 gi|344212084|ref|YP_004796404.1| - 5.4 6.3 25.0 0.089 12.1 3.1 3.3 1 1 2 3 3 3 0 F plasmid transfer operon, TraF, protein Sulfatase_C PF14707.6 gi|344212084|ref|YP_004796404.1| - 5.4 7.8 7.0 24 5.7 0.1 2.8 1 1 0 2 2 2 0 C-terminal region of aryl-sulfatase GCN5L1 PF06320.13 gi|344212084|ref|YP_004796404.1| - 5.5 7.2 17.9 0.3 11.2 1.9 2.4 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Striatin PF08232.12 gi|344212084|ref|YP_004796404.1| - 5.7 7.5 19.0 1.2 9.7 1.5 2.3 1 1 1 2 2 2 0 Striatin family FAP206 PF12018.8 gi|344212084|ref|YP_004796404.1| - 5.7 6.3 10.6 3 7.3 5.5 2.2 1 1 1 2 2 2 0 Domain of unknown function DLP_helical PF18709.1 gi|344212084|ref|YP_004796404.1| - 6.4 5.9 22.4 4.7 6.3 3.0 3.1 1 1 2 3 3 3 0 Dynamin-like helical domain Phlebovirus_NSM PF07246.11 gi|344212084|ref|YP_004796404.1| - 6.5 6.0 20.2 3.6 6.9 4.3 3.1 1 1 2 3 3 3 0 Phlebovirus nonstructural protein NS-M V-SNARE_C PF12352.8 gi|344212084|ref|YP_004796404.1| - 6.6 7.1 17.1 3.3 8.1 2.6 3.6 2 2 2 4 4 2 0 Snare region anchored in the vesicle membrane C-terminus UPF0449 PF15136.6 gi|344212084|ref|YP_004796404.1| - 6.6 7.3 30.7 6.6 7.3 2.2 5.0 1 1 4 5 5 5 0 Uncharacterised protein family UPF0449 Cortex-I_coil PF09304.10 gi|344212084|ref|YP_004796404.1| - 6.9 6.9 28.7 10 6.4 8.6 3.0 1 1 2 3 3 3 0 Cortexillin I, coiled coil DUF4349 PF14257.6 gi|344212084|ref|YP_004796404.1| - 7.2 6.0 32.9 12 5.3 12.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) ZapD PF07072.11 gi|344212084|ref|YP_004796404.1| - 7.8 6.2 14.8 7.6 6.2 0.7 2.6 1 1 0 2 2 2 0 Cell division protein DUF4559 PF15112.6 gi|344212084|ref|YP_004796404.1| - 7.8 6.1 21.2 7.8 6.1 10.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) Sec3_C PF09763.9 gi|344212084|ref|YP_004796404.1| - 8.8 4.6 17.4 0.33 9.3 1.8 2.4 1 1 0 2 2 2 0 Exocyst complex component Sec3 XRCC4 PF06632.12 gi|344212084|ref|YP_004796404.1| - 9.3 5.0 26.5 21 3.8 2.3 2.8 1 1 2 3 3 3 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 MIP-T3_C PF17749.1 gi|344212084|ref|YP_004796404.1| - 9.7 6.1 25.0 3.8 7.5 4.9 3.1 1 1 1 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region PEP-utilisers_N PF05524.13 gi|344212085|ref|YP_004796405.1| - 0.13 12.4 3.9 1.5 9.0 0.1 2.7 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal Phage_holin_3_6 PF07332.11 gi|344212085|ref|YP_004796405.1| - 0.15 12.2 5.4 0.076 13.0 1.1 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III CnrY PF17524.2 gi|344212085|ref|YP_004796405.1| - 0.15 12.3 0.5 0.34 11.1 0.5 1.6 1 0 0 1 1 1 0 Anti-sigma factor CnrY AAA_3 PF07726.11 gi|344212086|ref|YP_004796406.1| - 1.5e-61 206.0 0.3 2.9e-61 205.1 0.3 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|344212086|ref|YP_004796406.1| - 1.1e-20 73.2 3.5 2.1e-20 72.3 3.5 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|344212086|ref|YP_004796406.1| - 1.2e-11 44.7 0.0 2e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|344212086|ref|YP_004796406.1| - 2.2e-07 30.2 0.0 3.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|344212086|ref|YP_004796406.1| - 9.4e-07 29.3 0.0 2e-06 28.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|344212086|ref|YP_004796406.1| - 0.00031 20.5 0.0 0.0019 17.9 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|344212086|ref|YP_004796406.1| - 0.0005 19.9 0.0 0.0086 15.8 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|344212086|ref|YP_004796406.1| - 0.0088 15.4 0.0 0.22 10.9 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|344212086|ref|YP_004796406.1| - 0.023 14.8 0.1 0.096 12.8 0.0 2.0 1 1 1 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.6 gi|344212086|ref|YP_004796406.1| - 0.028 14.8 0.0 3.8 7.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_lid_8 PF17868.1 gi|344212086|ref|YP_004796406.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain Transposase_20 PF02371.16 gi|344212086|ref|YP_004796406.1| - 0.14 12.5 0.0 0.34 11.3 0.0 1.6 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family DUF58 PF01882.18 gi|344212087|ref|YP_004796407.1| - 6e-20 71.3 0.4 4.4e-19 68.6 0.0 2.5 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|344212087|ref|YP_004796407.1| - 4.1e-07 30.6 0.0 1e-06 29.3 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|344212087|ref|YP_004796407.1| - 1.6e-06 27.7 0.2 3.7e-06 26.5 0.2 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein Glycos_transf_2 PF00535.26 gi|344212087|ref|YP_004796407.1| - 0.11 12.3 0.0 0.29 10.9 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 2 VWA PF00092.28 gi|344212087|ref|YP_004796407.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain PyrI PF01948.18 gi|344212088|ref|YP_004796408.1| - 1.6e-34 118.0 0.3 2e-34 117.7 0.3 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|344212088|ref|YP_004796408.1| - 2.5e-13 49.7 0.1 4e-13 49.0 0.1 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.21 gi|344212089|ref|YP_004796409.1| - 4.7e-42 143.5 0.0 1.3e-41 142.0 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|344212089|ref|YP_004796409.1| - 7.6e-30 104.1 0.0 1.1e-29 103.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FTP PF07504.13 gi|344212089|ref|YP_004796409.1| - 0.11 12.4 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 Fungalysin/Thermolysin Propeptide Motif DUF2586 PF10758.9 gi|344212089|ref|YP_004796409.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2586) VCBS PF13517.6 gi|344212090|ref|YP_004796410.1| - 4.7e-24 84.7 26.3 3.6e-10 40.3 3.3 6.0 2 2 4 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|344212090|ref|YP_004796410.1| - 2.4e-21 75.5 26.3 0.00083 19.4 0.3 7.3 7 0 0 7 7 7 7 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|344212090|ref|YP_004796410.1| - 0.00088 18.7 10.6 1.9 7.8 0.0 5.9 6 1 1 7 7 7 3 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.6 gi|344212090|ref|YP_004796410.1| - 0.47 10.5 3.1 81 3.3 0.0 4.4 4 1 1 5 5 5 0 Ciliary BBSome complex subunit 2, middle region PliI PF16743.5 gi|344212090|ref|YP_004796410.1| - 1.8 8.3 9.2 79 3.0 0.7 5.0 5 1 1 6 6 6 0 Periplasmic lysozyme inhibitor of I-type lysozyme Itfg2 PF15907.5 gi|344212090|ref|YP_004796410.1| - 2.7 7.0 13.4 1.6 7.7 1.2 4.0 3 1 2 5 5 5 0 Integrin-alpha FG-GAP repeat-containing protein 2 CbiA PF01656.23 gi|344212091|ref|YP_004796411.1| - 3.7e-11 43.2 0.1 3.7e-11 43.2 0.1 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|344212091|ref|YP_004796411.1| - 3.6e-07 29.9 0.0 1.3e-05 24.9 0.0 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ AAA_31 PF13614.6 gi|344212091|ref|YP_004796411.1| - 2.3e-06 27.6 0.0 1.3e-05 25.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|344212091|ref|YP_004796411.1| - 7.1e-06 25.6 2.4 0.0045 16.5 0.4 2.3 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|344212091|ref|YP_004796411.1| - 0.00024 20.4 0.1 0.0004 19.7 0.1 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|344212091|ref|YP_004796411.1| - 0.00068 19.0 0.1 0.00091 18.6 0.1 1.2 1 0 0 1 1 1 1 ATPase MipZ Zeta_toxin PF06414.12 gi|344212091|ref|YP_004796411.1| - 0.023 14.0 0.4 0.039 13.2 0.1 1.6 2 0 0 2 2 2 0 Zeta toxin VirC1 PF07015.11 gi|344212091|ref|YP_004796411.1| - 0.034 13.4 0.0 0.51 9.6 0.1 2.2 2 0 0 2 2 2 0 VirC1 protein AAA_33 PF13671.6 gi|344212091|ref|YP_004796411.1| - 0.81 9.8 3.0 2.4 8.3 3.0 1.9 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|344212092|ref|YP_004796412.1| - 1.8e-07 30.8 0.0 0.0064 15.9 0.0 2.1 1 1 1 2 2 2 2 KaiC Importin_rep_3 PF18806.1 gi|344212092|ref|YP_004796412.1| - 0.06 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Importin 13 repeat Trigger_N PF05697.13 gi|344212092|ref|YP_004796412.1| - 0.14 12.5 0.0 0.23 11.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) DUF1829 PF08862.10 gi|344212092|ref|YP_004796412.1| - 0.19 12.2 0.0 0.32 11.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF1829 FKBP_C PF00254.28 gi|344212094|ref|YP_004796414.1| - 6e-06 26.5 0.3 1.5e-05 25.2 0.2 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Sporozoite_P67 PF05642.11 gi|344212094|ref|YP_004796414.1| - 0.045 11.9 0.8 0.075 11.1 0.8 1.3 1 0 0 1 1 1 0 Sporozoite P67 surface antigen ScdA_N PF04405.14 gi|344212094|ref|YP_004796414.1| - 0.12 12.1 0.6 0.35 10.5 0.6 1.8 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) PALP PF00291.25 gi|344212095|ref|YP_004796415.1| - 1e-72 245.0 5.7 1.2e-72 244.8 5.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CYTH PF01928.21 gi|344212096|ref|YP_004796416.1| - 2.1e-38 132.0 6.1 2.4e-38 131.8 6.1 1.0 1 0 0 1 1 1 1 CYTH domain Acyl-ACP_TE PF01643.17 gi|344212096|ref|YP_004796416.1| - 0.079 12.2 0.0 2.8 7.1 0.0 2.2 2 0 0 2 2 2 0 Acyl-ACP thioesterase AdoMet_Synthase PF01941.19 gi|344212097|ref|YP_004796417.1| - 5.3e-171 568.8 4.7 6e-171 568.6 4.7 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|344212097|ref|YP_004796417.1| - 0.042 14.5 1.4 0.26 12.0 0.0 2.7 2 1 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Asp23 PF03780.13 gi|344212097|ref|YP_004796417.1| - 1.5 9.2 9.5 2.7 8.5 1.5 3.5 2 1 0 2 2 2 0 Asp23 family, cell envelope-related function ThiI PF02568.14 gi|344212098|ref|YP_004796418.1| - 1e-43 149.2 0.0 1.4e-43 148.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|344212098|ref|YP_004796418.1| - 6.7e-12 45.7 0.0 1e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|344212098|ref|YP_004796418.1| - 0.0092 15.5 0.0 0.17 11.4 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|344212098|ref|YP_004796418.1| - 0.015 14.1 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|344212098|ref|YP_004796418.1| - 0.13 12.0 0.0 0.51 10.1 0.0 1.9 1 1 0 1 1 1 0 PP-loop family PALP PF00291.25 gi|344212100|ref|YP_004796420.1| - 2.3e-63 214.4 0.1 2.8e-63 214.1 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|344212100|ref|YP_004796420.1| - 0.0014 18.6 0.0 0.0036 17.3 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NikR_C PF08753.11 gi|344212101|ref|YP_004796421.1| - 6.7e-20 71.0 1.1 6.7e-20 71.0 1.1 1.5 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|344212101|ref|YP_004796421.1| - 4.5e-07 29.6 0.0 9.3e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|344212101|ref|YP_004796421.1| - 0.046 13.9 0.0 0.066 13.4 0.0 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|344212101|ref|YP_004796421.1| - 0.053 13.4 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB TetR_C_27 PF17935.1 gi|344212101|ref|YP_004796421.1| - 0.068 13.2 0.5 0.099 12.7 0.5 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HicB_lk_antitox PF15919.5 gi|344212101|ref|YP_004796421.1| - 0.08 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Osmo_MPGsynth PF09488.10 gi|344212101|ref|YP_004796421.1| - 0.084 11.6 0.0 0.093 11.4 0.0 1.1 1 0 0 1 1 1 0 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) eIF-1a PF01176.19 gi|344212102|ref|YP_004796422.1| - 3.9e-20 71.4 0.1 4.6e-20 71.2 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 UPF0058 PF01893.16 gi|344212103|ref|YP_004796423.1| - 1.9e-20 72.9 1.8 2e-20 72.9 1.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 PilS PF08805.11 gi|344212107|ref|YP_004796427.1| - 0.011 15.5 3.5 0.013 15.3 1.9 1.9 2 0 0 2 2 2 0 PilS N terminal SKI PF01202.22 gi|344212107|ref|YP_004796427.1| - 0.072 13.2 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase DUF3520 PF12034.8 gi|344212108|ref|YP_004796428.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3520) T2SSF PF00482.23 gi|344212110|ref|YP_004796430.1| - 3.4e-28 98.1 6.7 1.2e-16 60.9 0.8 3.2 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F Snf7 PF03357.21 gi|344212110|ref|YP_004796430.1| - 0.014 15.0 0.1 0.039 13.6 0.1 1.7 1 0 0 1 1 1 0 Snf7 DUF1461 PF07314.11 gi|344212110|ref|YP_004796430.1| - 0.016 15.1 1.0 0.064 13.2 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1461) T2SSE PF00437.20 gi|344212111|ref|YP_004796431.1| - 4.9e-43 147.1 0.0 1e-42 146.1 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|344212111|ref|YP_004796431.1| - 0.0032 17.2 0.1 0.0077 15.9 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Aminotran_1_2 PF00155.21 gi|344212112|ref|YP_004796432.1| - 3.8e-67 227.0 0.0 4.2e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|344212112|ref|YP_004796432.1| - 3.9e-05 22.8 0.0 0.00024 20.2 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|344212112|ref|YP_004796432.1| - 7.7e-05 22.1 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase LCIB_C_CA PF18599.1 gi|344212112|ref|YP_004796432.1| - 0.044 13.1 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases AsnC_trans_reg PF01037.21 gi|344212113|ref|YP_004796433.1| - 7e-16 58.0 0.6 1.5e-15 56.9 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|344212113|ref|YP_004796433.1| - 2.6e-09 36.5 0.2 9.7e-09 34.7 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344212113|ref|YP_004796433.1| - 2.9e-06 27.0 0.2 8e-06 25.6 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|344212113|ref|YP_004796433.1| - 2.9e-05 24.0 0.1 8e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344212113|ref|YP_004796433.1| - 0.00093 19.0 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344212113|ref|YP_004796433.1| - 0.0035 17.2 0.1 0.0055 16.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|344212113|ref|YP_004796433.1| - 0.0053 17.2 0.0 0.016 15.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|344212113|ref|YP_004796433.1| - 0.0067 16.4 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|344212113|ref|YP_004796433.1| - 0.0097 15.7 0.0 0.032 14.1 0.1 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|344212113|ref|YP_004796433.1| - 0.012 15.6 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.12 gi|344212113|ref|YP_004796433.1| - 0.02 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344212113|ref|YP_004796433.1| - 0.032 14.0 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HU-DNA_bdg PF14848.6 gi|344212113|ref|YP_004796433.1| - 0.43 10.6 2.4 2.6 8.1 0.2 2.4 2 1 1 3 3 3 0 DNA-binding domain FUR PF01475.19 gi|344212114|ref|YP_004796434.1| - 0.16 12.1 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family AhpC-TSA PF00578.21 gi|344212115|ref|YP_004796435.1| - 7.2e-18 64.7 0.0 9.8e-18 64.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344212115|ref|YP_004796435.1| - 9.4e-15 54.6 0.0 1.3e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.6 gi|344212115|ref|YP_004796435.1| - 0.0033 17.9 0.1 0.0059 17.0 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain T4_deiodinase PF00837.17 gi|344212115|ref|YP_004796435.1| - 0.031 13.6 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase Thioredoxin_8 PF13905.6 gi|344212115|ref|YP_004796435.1| - 0.035 14.4 0.0 0.053 13.9 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin PF00085.20 gi|344212115|ref|YP_004796435.1| - 0.042 13.8 0.0 0.55 10.2 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin TraF PF13728.6 gi|344212115|ref|YP_004796435.1| - 0.07 12.9 0.0 0.16 11.8 0.0 1.7 1 1 0 1 1 1 0 F plasmid transfer operon protein PBP-Tp47_a PF14889.6 gi|344212115|ref|YP_004796435.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain a HTH_20 PF12840.7 gi|344212118|ref|YP_004796438.1| - 0.056 13.5 0.1 5 7.3 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Methyltransf_3 PF01596.17 gi|344212119|ref|YP_004796439.1| - 9.5e-21 73.9 0.0 1.2e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|344212119|ref|YP_004796439.1| - 4.2e-13 50.2 0.1 6.8e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212119|ref|YP_004796439.1| - 2.1e-08 34.1 0.0 2.5e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344212119|ref|YP_004796439.1| - 2.4e-05 24.2 0.0 3.5e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|344212119|ref|YP_004796439.1| - 0.002 17.7 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|344212119|ref|YP_004796439.1| - 0.0055 16.1 0.0 0.0075 15.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|344212119|ref|YP_004796439.1| - 0.01 16.6 0.0 0.016 15.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|344212119|ref|YP_004796439.1| - 0.14 11.5 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CheC PF04509.12 gi|344212120|ref|YP_004796440.1| - 1.1e-14 54.0 1.7 1.3e-14 53.8 0.4 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|344212120|ref|YP_004796440.1| - 4e-05 23.7 1.3 9.7e-05 22.5 0.1 2.1 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX AMP-binding PF00501.28 gi|344212121|ref|YP_004796441.1| - 7.1e-90 301.6 0.0 8.2e-90 301.4 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344212121|ref|YP_004796441.1| - 5.3e-19 69.0 0.0 1.2e-18 67.8 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TAT_signal PF10518.9 gi|344212122|ref|YP_004796442.1| - 0.19 11.6 2.7 0.33 10.9 2.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acyl-CoA_dh_1 PF00441.24 gi|344212123|ref|YP_004796443.1| - 5.8e-41 140.2 4.0 5.8e-41 140.2 4.0 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344212123|ref|YP_004796443.1| - 1.5e-26 92.4 0.0 4.6e-26 90.9 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|344212123|ref|YP_004796443.1| - 1.2e-21 77.4 2.5 1.2e-21 77.4 2.5 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|344212123|ref|YP_004796443.1| - 3.1e-18 66.3 4.9 7.5e-18 65.1 4.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Cdc6_C PF09079.11 gi|344212124|ref|YP_004796444.1| - 3.9e-15 55.6 0.2 7.9e-15 54.6 0.2 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|344212124|ref|YP_004796444.1| - 1.5e-12 47.9 0.0 7.3e-12 45.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|344212124|ref|YP_004796444.1| - 7e-08 33.0 0.0 6.2e-07 30.0 0.0 2.5 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|344212124|ref|YP_004796444.1| - 8.5e-07 29.0 0.0 1.5e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain ATPase_2 PF01637.18 gi|344212124|ref|YP_004796444.1| - 1.4e-05 25.1 0.0 4.2e-05 23.6 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA PF00004.29 gi|344212124|ref|YP_004796444.1| - 3.1e-05 24.4 0.0 7.7e-05 23.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|344212124|ref|YP_004796444.1| - 4.7e-05 22.9 0.0 0.00011 21.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein PadR PF03551.14 gi|344212124|ref|YP_004796444.1| - 0.00015 21.7 0.2 0.00033 20.6 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family KAP_NTPase PF07693.14 gi|344212124|ref|YP_004796444.1| - 0.012 14.9 0.0 0.071 12.3 0.0 1.8 1 1 1 2 2 2 0 KAP family P-loop domain Sigma54_activat PF00158.26 gi|344212124|ref|YP_004796444.1| - 0.016 14.9 0.0 0.35 10.5 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain PSD5 PF07637.11 gi|344212124|ref|YP_004796444.1| - 0.04 14.3 0.6 1.2 9.6 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) AAA_18 PF13238.6 gi|344212124|ref|YP_004796444.1| - 0.044 14.3 0.0 0.097 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|344212124|ref|YP_004796444.1| - 0.048 13.2 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|344212124|ref|YP_004796444.1| - 0.06 13.4 0.0 0.71 9.9 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TrmB PF01978.19 gi|344212124|ref|YP_004796444.1| - 0.087 12.7 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEAD PF00270.29 gi|344212124|ref|YP_004796444.1| - 0.1 12.4 0.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|344212124|ref|YP_004796444.1| - 0.11 12.9 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|344212124|ref|YP_004796444.1| - 0.12 12.9 0.3 0.52 10.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|344212124|ref|YP_004796444.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|344212124|ref|YP_004796444.1| - 0.12 11.5 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Lactamase_B PF00753.27 gi|344212125|ref|YP_004796445.1| - 2.4e-20 73.4 6.1 3.2e-20 73.0 6.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|344212125|ref|YP_004796445.1| - 2.2e-08 33.9 0.2 3.5e-08 33.2 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|344212125|ref|YP_004796445.1| - 0.027 14.3 0.3 0.053 13.4 0.3 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Myosin_N PF02736.19 gi|344212126|ref|YP_004796446.1| - 0.075 12.9 0.2 0.16 11.9 0.0 1.6 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain DICT PF10069.9 gi|344212127|ref|YP_004796447.1| - 1.2e-17 63.9 0.0 2.3e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system CHASE6_C PF17150.4 gi|344212127|ref|YP_004796447.1| - 0.12 13.0 0.1 0.33 11.6 0.1 1.7 1 0 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain POR_N PF01855.19 gi|344212128|ref|YP_004796448.1| - 1.2e-48 165.9 0.3 2.4e-48 164.9 0.3 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|344212128|ref|YP_004796448.1| - 4.1e-45 154.0 0.0 2.1e-44 151.7 0.0 2.1 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|344212128|ref|YP_004796448.1| - 1.7e-09 37.9 0.0 2.9e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|344212128|ref|YP_004796448.1| - 0.0017 18.0 0.1 0.0037 16.9 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain adh_short PF00106.25 gi|344212128|ref|YP_004796448.1| - 0.18 11.3 0.1 2.5 7.5 0.0 2.3 2 0 0 2 2 2 0 short chain dehydrogenase TPP_enzyme_C PF02775.21 gi|344212129|ref|YP_004796449.1| - 6.8e-31 107.1 0.1 1e-30 106.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|344212129|ref|YP_004796449.1| - 0.0033 17.5 0.1 0.0083 16.2 0.1 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_24 PF13412.6 gi|344212130|ref|YP_004796450.1| - 5.2e-15 54.7 0.1 7.8e-15 54.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|344212130|ref|YP_004796450.1| - 3.9e-12 46.0 0.0 6.5e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|344212130|ref|YP_004796450.1| - 2.9e-10 39.8 0.1 5.1e-10 39.0 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344212130|ref|YP_004796450.1| - 3.5e-08 33.3 0.0 6.8e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344212130|ref|YP_004796450.1| - 1.3e-07 31.5 0.0 2.3e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344212130|ref|YP_004796450.1| - 3.2e-07 30.0 0.0 5.3e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|344212130|ref|YP_004796450.1| - 6.9e-07 29.4 0.3 1.4e-06 28.4 0.3 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|344212130|ref|YP_004796450.1| - 1.3e-06 28.0 0.1 2.2e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|344212130|ref|YP_004796450.1| - 2.4e-06 27.2 0.0 3.9e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|344212130|ref|YP_004796450.1| - 3.8e-06 26.7 0.0 5.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344212130|ref|YP_004796450.1| - 5.8e-06 26.1 0.0 1.8e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.6 gi|344212130|ref|YP_004796450.1| - 2.7e-05 24.0 0.0 4.5e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|344212130|ref|YP_004796450.1| - 5.8e-05 22.9 0.0 9.8e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|344212130|ref|YP_004796450.1| - 7.2e-05 23.1 0.0 0.00012 22.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|344212130|ref|YP_004796450.1| - 9.5e-05 22.2 0.2 0.00015 21.6 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|344212130|ref|YP_004796450.1| - 0.00017 21.7 0.0 0.00033 20.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|344212130|ref|YP_004796450.1| - 0.0006 19.8 0.0 0.00095 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix FaeA PF04703.12 gi|344212130|ref|YP_004796450.1| - 0.00077 19.8 0.1 0.0012 19.2 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein Sigma70_r4_2 PF08281.12 gi|344212130|ref|YP_004796450.1| - 0.001 18.7 0.1 0.0018 17.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|344212130|ref|YP_004796450.1| - 0.0011 18.9 0.0 0.002 18.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|344212130|ref|YP_004796450.1| - 0.0013 18.4 0.1 0.0026 17.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 gi|344212130|ref|YP_004796450.1| - 0.0046 16.9 0.0 0.0084 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_10 PF04967.12 gi|344212130|ref|YP_004796450.1| - 0.0047 16.7 0.1 0.0096 15.7 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|344212130|ref|YP_004796450.1| - 0.016 14.7 0.2 0.036 13.6 0.2 1.7 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_47 PF16221.5 gi|344212130|ref|YP_004796450.1| - 0.019 14.5 0.0 0.046 13.3 0.0 1.7 2 0 0 2 2 2 0 winged helix-turn-helix LacI PF00356.21 gi|344212130|ref|YP_004796450.1| - 0.028 14.2 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_27 PF13463.6 gi|344212130|ref|YP_004796450.1| - 0.03 14.8 0.1 0.088 13.3 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|344212130|ref|YP_004796450.1| - 0.041 13.7 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_45 PF14947.6 gi|344212130|ref|YP_004796450.1| - 0.045 13.7 0.0 0.079 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_Mga PF08280.11 gi|344212130|ref|YP_004796450.1| - 0.061 13.4 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_1 PF00126.27 gi|344212130|ref|YP_004796450.1| - 0.063 13.2 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TetR_N PF00440.23 gi|344212130|ref|YP_004796450.1| - 0.063 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_30 PF13556.6 gi|344212130|ref|YP_004796450.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF4978 PF16349.5 gi|344212130|ref|YP_004796450.1| - 0.076 12.6 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4978) MerR PF00376.23 gi|344212130|ref|YP_004796450.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein SLH PF00395.20 gi|344212130|ref|YP_004796450.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 S-layer homology domain Phage_NinH PF06322.11 gi|344212130|ref|YP_004796450.1| - 0.12 12.3 0.0 0.59 10.1 0.0 1.9 2 0 0 2 2 2 0 Phage NinH protein RPA_C PF08784.11 gi|344212130|ref|YP_004796450.1| - 0.13 12.9 0.0 0.23 12.1 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal TnsD PF15978.5 gi|344212130|ref|YP_004796450.1| - 0.16 10.9 0.1 0.21 10.5 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D DHHA1 PF02272.19 gi|344212131|ref|YP_004796451.1| - 2.5e-14 53.8 0.4 7.8e-14 52.3 0.4 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|344212131|ref|YP_004796451.1| - 5.7e-12 45.8 0.1 1.6e-11 44.3 0.0 1.8 2 0 0 2 2 2 1 DHH family TrkA_N PF02254.18 gi|344212131|ref|YP_004796451.1| - 1.8e-11 44.3 0.2 6.6e-11 42.5 0.1 2.2 2 0 0 2 2 2 1 TrkA-N domain CBS PF00571.28 gi|344212132|ref|YP_004796452.1| - 6.2e-25 87.4 2.9 1.1e-11 45.0 0.1 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|344212132|ref|YP_004796452.1| - 5.2e-10 39.5 0.1 2.2e-09 37.5 0.0 1.9 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|344212132|ref|YP_004796452.1| - 0.00015 21.9 0.1 0.0012 19.0 0.1 2.0 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.11 gi|344212132|ref|YP_004796452.1| - 0.039 12.8 0.0 0.051 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1015) MM_CoA_mutase PF01642.22 gi|344212133|ref|YP_004796453.1| - 2.3e-215 716.0 1.7 2.7e-215 715.8 1.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase VKG_Carbox PF05090.14 gi|344212134|ref|YP_004796454.1| - 1.2e-09 37.5 1.1 1.5e-09 37.2 1.1 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase LapA_dom PF06305.11 gi|344212135|ref|YP_004796455.1| - 0.011 15.5 0.6 0.011 15.5 0.6 1.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain COX1 PF00115.20 gi|344212136|ref|YP_004796456.1| - 6.8e-150 499.7 59.3 6.8e-150 499.7 59.3 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF3007 PF11460.8 gi|344212137|ref|YP_004796457.1| - 0.021 15.0 0.4 0.026 14.7 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) DUF485 PF04341.12 gi|344212137|ref|YP_004796457.1| - 0.57 10.2 4.8 0.73 9.8 4.6 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF485 DUF2070 PF09843.9 gi|344212137|ref|YP_004796457.1| - 0.66 8.2 3.5 0.76 8.0 3.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TadE PF07811.12 gi|344212137|ref|YP_004796457.1| - 2 8.7 8.5 0.41 11.0 0.4 2.2 2 0 0 2 2 2 0 TadE-like protein Cyt_c_ox_IV PF12270.8 gi|344212138|ref|YP_004796458.1| - 0.0099 16.0 2.2 0.0099 16.0 2.2 2.6 1 1 1 2 2 2 2 Cytochrome c oxidase subunit IV MscS_porin PF12795.7 gi|344212139|ref|YP_004796459.1| - 0.00071 19.2 15.1 0.00071 19.2 15.1 2.6 3 0 0 3 3 2 1 Mechanosensitive ion channel porin domain Wtap PF17098.5 gi|344212139|ref|YP_004796459.1| - 0.0014 18.6 6.0 0.0045 16.9 6.0 1.9 1 0 0 1 1 1 1 WTAP/Mum2p family DivIC PF04977.15 gi|344212139|ref|YP_004796459.1| - 0.0022 17.7 5.9 0.0056 16.4 5.9 1.7 1 0 0 1 1 1 1 Septum formation initiator YabA PF06156.13 gi|344212139|ref|YP_004796459.1| - 0.0028 18.3 4.8 0.067 13.8 3.8 2.6 2 0 0 2 2 2 1 Initiation control protein YabA ADIP PF11559.8 gi|344212139|ref|YP_004796459.1| - 0.013 15.5 4.2 0.013 15.5 4.2 2.3 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding MPS2 PF17060.5 gi|344212139|ref|YP_004796459.1| - 0.021 14.1 2.3 0.036 13.3 2.3 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 RasGAP_C PF03836.15 gi|344212139|ref|YP_004796459.1| - 0.031 14.4 0.5 0.054 13.6 0.5 1.3 1 0 0 1 1 1 0 RasGAP C-terminus FapA PF03961.13 gi|344212139|ref|YP_004796459.1| - 0.039 12.6 0.8 0.058 12.0 0.8 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Spc7 PF08317.11 gi|344212139|ref|YP_004796459.1| - 0.042 12.7 6.1 0.072 12.0 6.1 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Rootletin PF15035.6 gi|344212139|ref|YP_004796459.1| - 0.045 13.8 8.7 0.096 12.7 8.7 1.5 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Cnn_1N PF07989.11 gi|344212139|ref|YP_004796459.1| - 0.058 13.5 6.7 0.16 12.2 6.7 1.8 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 TMF_DNA_bd PF12329.8 gi|344212139|ref|YP_004796459.1| - 0.076 13.0 14.8 0.15 12.0 14.8 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding V-SNARE PF05008.15 gi|344212139|ref|YP_004796459.1| - 0.16 12.3 6.7 0.55 10.6 6.7 1.9 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus HAUS-augmin3 PF14932.6 gi|344212139|ref|YP_004796459.1| - 0.17 11.4 7.7 0.34 10.4 7.7 1.4 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Cep57_CLD_2 PF14197.6 gi|344212139|ref|YP_004796459.1| - 0.23 11.6 11.4 0.59 10.3 11.4 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.9 gi|344212139|ref|YP_004796459.1| - 0.26 11.3 11.4 1.1 9.3 11.4 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|344212139|ref|YP_004796459.1| - 0.29 10.2 8.3 0.012 14.8 2.2 1.6 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|344212139|ref|YP_004796459.1| - 0.32 11.1 10.8 0.72 9.9 10.8 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus bZIP_1 PF00170.21 gi|344212139|ref|YP_004796459.1| - 0.41 10.8 4.0 1.1 9.4 4.0 1.8 1 0 0 1 1 1 0 bZIP transcription factor TolA_bind_tri PF16331.5 gi|344212139|ref|YP_004796459.1| - 0.44 10.6 10.4 1.5 8.9 10.4 1.9 1 1 0 1 1 1 0 TolA binding protein trimerisation DHR10 PF18595.1 gi|344212139|ref|YP_004796459.1| - 0.47 10.5 13.7 1.5 8.9 13.7 1.8 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF4164 PF13747.6 gi|344212139|ref|YP_004796459.1| - 0.48 10.7 14.7 1.6 9.0 14.7 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF1664 PF07889.12 gi|344212139|ref|YP_004796459.1| - 0.66 10.0 1.6 1.2 9.2 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|344212139|ref|YP_004796459.1| - 0.97 9.9 7.2 8.2 6.9 3.5 2.6 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Spc24 PF08286.11 gi|344212139|ref|YP_004796459.1| - 1.1 9.5 8.0 4.2 7.7 8.0 2.0 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF641 PF04859.12 gi|344212139|ref|YP_004796459.1| - 1.3 9.3 9.4 2.9 8.2 3.1 2.5 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) DUF724 PF05266.14 gi|344212139|ref|YP_004796459.1| - 1.5 8.6 5.5 3.4 7.4 5.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3450 PF11932.8 gi|344212139|ref|YP_004796459.1| - 3.1 7.0 12.3 0.029 13.7 4.1 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF3450) Golgin_A5 PF09787.9 gi|344212139|ref|YP_004796459.1| - 7.4 5.9 14.2 0.18 11.2 7.5 1.6 2 0 0 2 2 1 0 Golgin subfamily A member 5 HTH_12 PF08461.10 gi|344212140|ref|YP_004796460.1| - 0.0073 16.2 0.0 0.015 15.3 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|344212140|ref|YP_004796460.1| - 0.0096 15.5 0.4 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344212140|ref|YP_004796460.1| - 0.03 14.2 0.2 0.093 12.6 0.2 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344212140|ref|YP_004796460.1| - 0.063 13.2 0.1 0.11 12.4 0.1 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|344212140|ref|YP_004796460.1| - 0.08 12.9 0.0 0.09 12.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_IclR PF09339.10 gi|344212140|ref|YP_004796460.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain CLZ PF16526.5 gi|344212140|ref|YP_004796460.1| - 0.34 11.3 4.0 4.8 7.6 0.4 2.2 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Adenylsucc_synt PF00709.21 gi|344212141|ref|YP_004796461.1| - 7.4e-154 512.7 0.0 8.5e-154 512.5 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Trm112p PF03966.16 gi|344212142|ref|YP_004796462.1| - 1.2e-10 41.7 1.0 2.3e-10 40.9 1.0 1.4 1 1 0 1 1 1 1 Trm112p-like protein zf-C2HE PF16278.5 gi|344212142|ref|YP_004796462.1| - 0.065 13.7 0.1 0.08 13.4 0.1 1.2 1 0 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger CHRD PF07452.12 gi|344212143|ref|YP_004796463.1| - 0.11 13.4 0.2 0.21 12.5 0.2 1.5 1 1 0 1 1 1 0 CHRD domain EFF-AFF PF14884.6 gi|344212143|ref|YP_004796463.1| - 0.24 9.5 0.0 0.29 9.2 0.0 1.2 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen DUF3094 PF11293.8 gi|344212143|ref|YP_004796463.1| - 0.94 9.2 3.8 1.4 8.7 3.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3094) DR2241 PF18069.1 gi|344212144|ref|YP_004796464.1| - 4.2e-46 155.4 2.9 1.2e-45 153.9 0.9 2.5 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|344212144|ref|YP_004796464.1| - 2.8e-28 98.2 0.3 5e-28 97.4 0.3 1.4 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Peptidase_M48 PF01435.18 gi|344212145|ref|YP_004796465.1| - 1.3e-34 119.7 0.0 2.3e-34 118.9 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344212145|ref|YP_004796465.1| - 4.8e-07 29.3 0.0 7.8e-06 25.3 0.0 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 HisKA_4TM PF16926.5 gi|344212145|ref|YP_004796465.1| - 0.0081 15.7 1.2 0.021 14.4 1.2 1.8 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase DUF4157 PF13699.6 gi|344212145|ref|YP_004796465.1| - 0.34 11.2 1.6 0.51 10.6 0.2 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4157) PQQ_2 PF13360.6 gi|344212146|ref|YP_004796466.1| - 1.9e-28 99.7 6.2 3.2e-19 69.5 5.1 2.8 2 1 1 3 3 3 2 PQQ-like domain PQQ_3 PF13570.6 gi|344212146|ref|YP_004796466.1| - 2.5e-11 43.7 21.1 6.1e-06 26.6 1.5 7.3 7 1 0 7 7 7 4 PQQ-like domain PQQ PF01011.21 gi|344212146|ref|YP_004796466.1| - 6.2e-11 41.7 2.6 9.7e-06 25.3 0.0 5.2 6 0 0 6 6 6 3 PQQ enzyme repeat CbiX PF01903.17 gi|344212147|ref|YP_004796467.1| - 4.9e-43 145.8 0.0 2.5e-20 72.8 0.0 2.3 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|344212147|ref|YP_004796467.1| - 1.5e-06 27.7 0.0 0.0011 18.3 0.1 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) tRNA-synt_1e PF01406.19 gi|344212150|ref|YP_004796470.1| - 1.4e-104 349.7 0.0 2.8e-103 345.4 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|344212150|ref|YP_004796470.1| - 2.6e-13 50.2 1.4 1e-12 48.3 0.6 2.2 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|344212150|ref|YP_004796470.1| - 7.9e-11 41.3 0.1 0.00013 20.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|344212150|ref|YP_004796470.1| - 1.9e-08 33.6 0.1 6.5e-05 22.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|344212150|ref|YP_004796470.1| - 5.1e-05 21.7 0.1 0.00016 20.1 0.0 1.8 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|344212150|ref|YP_004796470.1| - 0.0023 16.9 0.0 0.0042 16.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.19 gi|344212150|ref|YP_004796470.1| - 0.024 14.4 0.2 0.024 14.4 0.2 2.3 2 0 0 2 2 2 0 UvrB/uvrC motif FeoB_Cyto PF17910.1 gi|344212150|ref|YP_004796470.1| - 0.065 13.8 0.2 2.8 8.6 0.1 2.8 1 1 0 1 1 1 0 FeoB cytosolic helical domain AP_endonuc_2 PF01261.24 gi|344212150|ref|YP_004796470.1| - 0.12 11.8 2.9 4.1 6.8 0.2 2.7 2 1 0 3 3 3 0 Xylose isomerase-like TIM barrel DUF2628 PF10947.8 gi|344212152|ref|YP_004796472.1| - 0.21 12.0 1.1 0.24 11.8 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF3040 PF11239.8 gi|344212152|ref|YP_004796472.1| - 6.1 7.2 9.3 9.3 6.6 9.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) CorA PF01544.18 gi|344212153|ref|YP_004796473.1| - 6.6e-69 232.4 0.1 8.2e-69 232.1 0.1 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TctA PF01970.16 gi|344212154|ref|YP_004796474.1| - 1.8e-56 191.6 40.0 2.3e-56 191.3 40.0 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HTH_20 PF12840.7 gi|344212155|ref|YP_004796475.1| - 1.6e-11 44.1 0.1 2.6e-11 43.4 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344212155|ref|YP_004796475.1| - 1.9e-08 34.0 0.0 2.8e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344212155|ref|YP_004796475.1| - 7.6e-07 28.9 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344212155|ref|YP_004796475.1| - 2.4e-06 27.3 0.0 3.6e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|344212155|ref|YP_004796475.1| - 2e-05 25.0 0.1 2.8e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|344212155|ref|YP_004796475.1| - 7.6e-05 22.5 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344212155|ref|YP_004796475.1| - 0.00014 21.6 0.1 0.00021 21.0 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|344212155|ref|YP_004796475.1| - 0.0004 20.2 0.0 0.00055 19.8 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit B-block_TFIIIC PF04182.12 gi|344212155|ref|YP_004796475.1| - 0.00089 19.4 0.0 0.0013 18.8 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|344212155|ref|YP_004796475.1| - 0.0021 17.6 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|344212155|ref|YP_004796475.1| - 0.0041 17.3 0.0 0.0056 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|344212155|ref|YP_004796475.1| - 0.0094 16.2 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) GntR PF00392.21 gi|344212155|ref|YP_004796475.1| - 0.0094 15.6 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PadR PF03551.14 gi|344212155|ref|YP_004796475.1| - 0.013 15.4 0.4 0.031 14.2 0.3 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HxlR PF01638.17 gi|344212155|ref|YP_004796475.1| - 0.026 14.4 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix RP-C PF03428.13 gi|344212155|ref|YP_004796475.1| - 0.12 12.0 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Replication protein C N-terminal domain MoeA_N PF03453.17 gi|344212157|ref|YP_004796477.1| - 4.9e-42 143.4 6.6 8.9e-42 142.5 6.6 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|344212157|ref|YP_004796477.1| - 4.1e-25 88.1 0.2 7.1e-25 87.4 0.2 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|344212157|ref|YP_004796477.1| - 2.1e-18 66.3 0.1 2.1e-18 66.3 0.1 3.0 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|344212158|ref|YP_004796478.1| - 2.2e-41 141.3 7.1 4.6e-41 140.2 7.1 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|344212158|ref|YP_004796478.1| - 3.8e-24 85.0 0.0 7.4e-24 84.1 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|344212158|ref|YP_004796478.1| - 2.5e-23 82.2 0.0 2.8e-22 78.8 0.0 2.4 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.15 gi|344212158|ref|YP_004796478.1| - 2e-16 59.9 0.2 1.1e-15 57.5 0.0 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Fe-ADH PF00465.19 gi|344212159|ref|YP_004796479.1| - 1.4e-62 211.7 1.1 1.7e-62 211.4 1.1 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|344212159|ref|YP_004796479.1| - 5e-10 39.5 0.0 2.5e-08 33.9 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Pyr_redox_2 PF07992.14 gi|344212160|ref|YP_004796480.1| - 5.7e-40 137.4 0.3 6.9e-40 137.1 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344212160|ref|YP_004796480.1| - 2.4e-07 31.2 0.9 1e-05 26.0 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|344212160|ref|YP_004796480.1| - 0.023 14.0 0.3 3.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|344212160|ref|YP_004796480.1| - 0.12 12.4 1.1 15 5.5 0.1 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding ThuA PF06283.11 gi|344212161|ref|YP_004796481.1| - 5.2e-33 115.0 0.2 6.1e-33 114.8 0.2 1.1 1 0 0 1 1 1 1 Trehalose utilisation LacI PF00356.21 gi|344212161|ref|YP_004796481.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HxlR PF01638.17 gi|344212162|ref|YP_004796482.1| - 1.4e-27 95.4 0.0 1.6e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.19 gi|344212162|ref|YP_004796482.1| - 0.0066 16.3 0.0 0.0093 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|344212162|ref|YP_004796482.1| - 0.014 15.3 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|344212162|ref|YP_004796482.1| - 0.086 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|344212162|ref|YP_004796482.1| - 0.12 12.4 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix CoA_binding_2 PF13380.6 gi|344212163|ref|YP_004796483.1| - 8.1e-37 126.3 0.0 9.2e-37 126.1 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|344212163|ref|YP_004796483.1| - 0.00029 21.5 0.0 0.00043 20.9 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain DUF3665 PF12427.8 gi|344212163|ref|YP_004796483.1| - 0.41 10.4 2.5 0.38 10.5 0.5 2.0 3 0 0 3 3 3 0 Branched-chain amino acid aminotransferase DUF393 PF04134.12 gi|344212164|ref|YP_004796484.1| - 8.1e-14 52.9 0.1 9.3e-14 52.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 BolA PF01722.18 gi|344212165|ref|YP_004796485.1| - 1.3e-17 63.8 0.0 1.5e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Glutaredoxin PF00462.24 gi|344212166|ref|YP_004796486.1| - 1.2e-15 57.4 0.1 2.1e-15 56.7 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.6 gi|344212166|ref|YP_004796486.1| - 0.037 14.4 0.0 0.055 13.9 0.0 1.3 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain KH_7 PF17214.3 gi|344212168|ref|YP_004796488.1| - 8e-27 93.0 0.4 1.2e-24 86.0 0.4 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|344212168|ref|YP_004796488.1| - 5.2e-22 78.2 0.0 9.6e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|344212168|ref|YP_004796488.1| - 2.3e-14 53.1 0.0 4.7e-14 52.1 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|344212168|ref|YP_004796488.1| - 1.6e-12 47.9 1.0 6.7e-12 45.8 1.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|344212168|ref|YP_004796488.1| - 1.1e-10 41.2 0.0 2.1e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|344212168|ref|YP_004796488.1| - 1.9e-10 40.6 0.2 5.1e-10 39.2 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|344212168|ref|YP_004796488.1| - 1.4e-05 24.8 0.1 0.00011 22.0 0.0 2.3 2 1 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|344212168|ref|YP_004796488.1| - 0.00074 19.3 0.0 0.0021 17.9 0.0 1.7 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.6 gi|344212168|ref|YP_004796488.1| - 0.0017 18.2 0.0 0.0055 16.6 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF3489 PF11994.8 gi|344212168|ref|YP_004796488.1| - 0.13 12.4 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) DHHA1 PF02272.19 gi|344212169|ref|YP_004796489.1| - 4.7e-13 49.7 0.1 1e-12 48.6 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|344212169|ref|YP_004796489.1| - 6e-13 48.9 0.4 1.1e-12 48.1 0.4 1.4 1 0 0 1 1 1 1 DHH family MFS_MOT1 PF16983.5 gi|344212170|ref|YP_004796490.1| - 1.5e-40 138.0 27.9 1.4e-21 76.9 9.5 3.5 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily Sulfate_transp PF00916.20 gi|344212170|ref|YP_004796490.1| - 3.5e-06 26.0 7.3 3.5e-06 26.0 7.3 2.4 1 1 1 2 2 2 1 Sulfate permease family DUF3754 PF12576.8 gi|344212170|ref|YP_004796490.1| - 0.12 12.3 0.1 0.12 12.3 0.1 3.2 4 0 0 4 4 4 0 Protein of unknown function (DUF3754) Radical_SAM PF04055.21 gi|344212171|ref|YP_004796491.1| - 4.2e-22 79.3 0.0 7.4e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|344212171|ref|YP_004796491.1| - 3.8e-14 52.7 0.2 2.7e-12 46.7 0.2 2.3 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|344212171|ref|YP_004796491.1| - 1.2e-07 32.1 0.0 2.3e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|344212171|ref|YP_004796491.1| - 2.3e-06 27.7 0.0 4.8e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_CBB3 PF13442.6 gi|344212171|ref|YP_004796491.1| - 0.0062 16.8 0.1 2.3 8.6 0.0 2.8 2 1 0 2 2 2 2 Cytochrome C oxidase, cbb3-type, subunit III Imm75 PF15660.6 gi|344212171|ref|YP_004796491.1| - 0.015 15.5 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Putative Immunity protein 75 Cytochrom_C PF00034.21 gi|344212171|ref|YP_004796491.1| - 0.098 13.8 0.0 4.9 8.4 0.0 2.6 2 0 0 2 2 2 0 Cytochrome c NTP_transf_3 PF12804.7 gi|344212173|ref|YP_004796493.1| - 1.5e-35 122.9 0.6 1.9e-35 122.6 0.6 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|344212173|ref|YP_004796493.1| - 0.0015 18.5 0.0 0.0041 17.1 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase RPN6_C_helix PF18503.1 gi|344212173|ref|YP_004796493.1| - 0.96 9.2 4.2 61 3.5 0.4 3.4 3 0 0 3 3 3 0 26S proteasome subunit RPN6 C-terminal helix domain AFOR_C PF01314.18 gi|344212174|ref|YP_004796494.1| - 3.8e-95 319.1 0.0 5.8e-95 318.5 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|344212174|ref|YP_004796494.1| - 1.4e-60 204.6 0.2 1.9e-60 204.1 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain TcpE PF12648.7 gi|344212176|ref|YP_004796496.1| - 0.041 14.4 2.1 0.05 14.1 2.1 1.1 1 0 0 1 1 1 0 TcpE family Zn-ribbon_8 PF09723.10 gi|344212177|ref|YP_004796497.1| - 0.0012 18.9 2.3 0.0017 18.5 2.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|344212177|ref|YP_004796497.1| - 0.0039 16.7 0.8 0.73 9.4 0.0 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding zf_UBZ PF18439.1 gi|344212177|ref|YP_004796497.1| - 0.0041 16.7 1.4 0.0093 15.5 0.1 1.9 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-RRN7 PF11781.8 gi|344212177|ref|YP_004796497.1| - 0.011 15.4 2.1 0.13 11.9 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-dskA_traR PF01258.17 gi|344212177|ref|YP_004796497.1| - 0.013 15.4 1.5 0.15 12.0 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4_3 PF13920.6 gi|344212177|ref|YP_004796497.1| - 0.02 14.7 0.5 0.027 14.3 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Sgf11 PF08209.11 gi|344212177|ref|YP_004796497.1| - 0.022 14.3 0.8 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RNHCP PF12647.7 gi|344212177|ref|YP_004796497.1| - 0.024 14.6 0.2 0.024 14.6 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain DZR PF12773.7 gi|344212177|ref|YP_004796497.1| - 0.039 14.0 1.3 0.054 13.5 1.3 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|344212177|ref|YP_004796497.1| - 0.066 13.3 1.9 1.1 9.3 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|344212177|ref|YP_004796497.1| - 0.07 13.1 0.4 0.079 13.0 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF5318 PF17249.2 gi|344212177|ref|YP_004796497.1| - 0.12 12.1 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5318) DUF2379 PF09543.10 gi|344212178|ref|YP_004796498.1| - 0.088 13.0 1.7 0.31 11.2 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Dyp_perox PF04261.12 gi|344212180|ref|YP_004796500.1| - 0.0053 15.8 0.0 0.0093 15.0 0.0 1.6 1 0 0 1 1 1 1 Dyp-type peroxidase family DUF3135 PF11333.8 gi|344212180|ref|YP_004796500.1| - 0.11 12.8 0.8 11 6.3 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3135) Pox_I5 PF04713.12 gi|344212183|ref|YP_004796503.1| - 0.09 12.8 3.6 0.14 12.2 3.7 1.3 1 1 0 1 1 1 0 Poxvirus protein I5 Nitrate_red_del PF02613.15 gi|344212184|ref|YP_004796504.1| - 2.1e-26 92.6 0.1 2.8e-26 92.1 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit FlpD PF02662.16 gi|344212185|ref|YP_004796505.1| - 6e-25 87.6 0.0 1.3e-24 86.5 0.0 1.6 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.7 gi|344212185|ref|YP_004796505.1| - 1e-14 54.9 33.1 1.3e-06 28.9 11.4 5.9 4 2 3 7 7 7 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344212185|ref|YP_004796505.1| - 1e-13 52.0 21.3 0.00049 21.0 0.2 6.6 6 0 0 6 6 6 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|344212185|ref|YP_004796505.1| - 1.4e-12 47.6 36.7 7.5e-06 26.0 9.1 5.3 5 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344212185|ref|YP_004796505.1| - 4.2e-12 45.3 51.0 0.00012 21.8 4.2 7.6 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|344212185|ref|YP_004796505.1| - 5.1e-10 39.7 16.8 0.016 15.6 0.3 5.9 5 1 0 5 5 5 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344212185|ref|YP_004796505.1| - 1.4e-06 28.4 34.3 5.4e-05 23.3 4.1 5.4 5 1 1 6 6 6 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|344212185|ref|YP_004796505.1| - 1.7e-06 27.8 54.0 7.6e-05 22.6 2.8 7.2 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|344212185|ref|YP_004796505.1| - 7.3e-06 26.0 44.2 0.0041 17.2 13.9 5.4 3 3 3 6 6 6 4 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344212185|ref|YP_004796505.1| - 1e-05 25.9 28.5 0.015 15.9 0.3 6.2 6 1 1 7 7 7 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|344212185|ref|YP_004796505.1| - 0.00054 20.1 21.8 0.19 11.9 1.4 4.8 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344212185|ref|YP_004796505.1| - 0.00078 19.4 3.8 0.00078 19.4 3.8 7.4 8 0 0 8 8 8 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344212185|ref|YP_004796505.1| - 0.087 13.4 51.9 0.075 13.6 2.9 7.8 9 0 0 9 9 8 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|344212186|ref|YP_004796506.1| - 4.4e-36 124.8 3.1 4.3e-35 121.5 3.1 2.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344212186|ref|YP_004796506.1| - 2.3e-18 66.2 0.1 5.3e-18 65.1 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|344212186|ref|YP_004796506.1| - 6.6e-15 54.8 0.3 1.2e-14 54.0 0.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|344212186|ref|YP_004796506.1| - 0.0049 16.7 2.7 0.01 15.6 2.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|344212187|ref|YP_004796507.1| - 2.9e-16 59.4 11.7 2.9e-16 59.4 11.7 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344212187|ref|YP_004796507.1| - 1.9e-14 54.0 23.3 3.9e-07 30.5 8.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344212187|ref|YP_004796507.1| - 8.6e-12 45.0 25.2 1.5e-06 28.2 7.3 3.0 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344212187|ref|YP_004796507.1| - 1.4e-09 37.9 26.5 2e-06 27.8 6.5 3.1 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344212187|ref|YP_004796507.1| - 2.8e-07 30.1 39.2 2e-06 27.3 1.4 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344212187|ref|YP_004796507.1| - 1.2e-06 28.3 38.4 4.5e-05 23.3 1.5 5.3 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|344212187|ref|YP_004796507.1| - 3.8e-06 27.3 22.9 0.00086 19.7 5.9 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344212187|ref|YP_004796507.1| - 4.4e-06 27.5 19.6 0.27 12.2 4.9 4.7 4 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|344212187|ref|YP_004796507.1| - 1.1e-05 25.5 27.5 0.00032 20.8 10.9 3.9 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344212187|ref|YP_004796507.1| - 1.5e-05 24.8 35.3 0.0024 17.9 1.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|344212187|ref|YP_004796507.1| - 0.00015 22.3 24.7 0.0012 19.4 6.0 3.6 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|344212187|ref|YP_004796507.1| - 0.00017 22.3 39.3 0.027 15.4 4.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344212187|ref|YP_004796507.1| - 0.0074 16.7 11.7 0.026 15.0 2.0 4.5 4 1 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|344212187|ref|YP_004796507.1| - 0.19 12.3 0.3 0.19 12.3 0.3 4.3 4 1 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|344212187|ref|YP_004796507.1| - 0.7 10.1 22.4 0.35 11.1 7.7 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|344212187|ref|YP_004796507.1| - 1.7 9.5 19.5 0.31 11.8 6.2 3.3 3 1 0 3 3 3 0 4Fe-4S single cluster domain BTP PF05232.12 gi|344212188|ref|YP_004796508.1| - 0.035 14.2 1.8 0.13 12.3 0.0 2.1 2 0 0 2 2 2 0 Chlorhexidine efflux transporter Ni_hydr_CYTB PF01292.20 gi|344212189|ref|YP_004796509.1| - 5.3e-22 78.3 10.3 1.7e-20 73.3 11.8 2.0 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM PF03929.16 gi|344212189|ref|YP_004796509.1| - 0.011 15.5 1.3 0.011 15.5 1.3 2.9 3 1 0 3 3 3 0 PepSY-associated TM region Asp4 PF16996.5 gi|344212189|ref|YP_004796509.1| - 0.28 11.0 0.2 0.28 11.0 0.2 3.0 3 0 0 3 3 3 0 Accessory secretory protein Sec Asp4 DUF5516 PF17637.2 gi|344212189|ref|YP_004796509.1| - 0.96 9.3 4.4 3.6 7.4 4.4 2.0 1 0 0 1 1 1 0 Family of unknown function (DUF5516) COX14 PF14880.6 gi|344212189|ref|YP_004796509.1| - 1.5 8.7 0.0 1.5 8.7 0.0 3.0 3 0 0 3 3 3 0 Cytochrome oxidase c assembly DUF1418 PF07214.12 gi|344212189|ref|YP_004796509.1| - 6.1 6.8 5.8 5.9 6.8 1.4 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1418) DUF2985 PF11204.8 gi|344212191|ref|YP_004796511.1| - 0.015 15.5 1.0 0.019 15.1 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2985) Mit_proteolip PF08039.11 gi|344212191|ref|YP_004796511.1| - 0.13 12.8 0.1 0.2 12.2 0.0 1.3 1 1 0 1 1 1 0 Mitochondrial proteolipid IclR PF01614.18 gi|344212192|ref|YP_004796512.1| - 2.4e-36 124.4 0.0 3.4e-36 123.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344212192|ref|YP_004796512.1| - 3.6e-13 49.1 0.0 1.2e-12 47.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344212192|ref|YP_004796512.1| - 2e-05 24.1 0.0 3.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344212192|ref|YP_004796512.1| - 3.9e-05 23.4 0.0 8.9e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|344212192|ref|YP_004796512.1| - 4.6e-05 23.5 0.0 0.00011 22.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|344212192|ref|YP_004796512.1| - 4.9e-05 23.1 0.0 0.00011 22.0 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344212192|ref|YP_004796512.1| - 6.8e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344212192|ref|YP_004796512.1| - 0.00058 19.9 0.1 0.0018 18.3 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|344212192|ref|YP_004796512.1| - 0.0006 19.7 0.0 0.0012 18.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|344212192|ref|YP_004796512.1| - 0.0007 19.3 0.0 0.0021 17.8 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|344212192|ref|YP_004796512.1| - 0.0028 17.6 0.0 0.0056 16.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|344212192|ref|YP_004796512.1| - 0.0041 17.1 0.0 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|344212192|ref|YP_004796512.1| - 0.021 15.2 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|344212192|ref|YP_004796512.1| - 0.049 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain SpoIIID PF12116.8 gi|344212192|ref|YP_004796512.1| - 0.049 13.7 0.0 3.1 8.0 0.0 3.0 2 1 1 3 3 3 0 Stage III sporulation protein D Phage_CI_repr PF07022.13 gi|344212192|ref|YP_004796512.1| - 0.051 13.7 0.0 0.082 13.0 0.0 1.7 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain GntR PF00392.21 gi|344212192|ref|YP_004796512.1| - 0.055 13.1 0.1 0.45 10.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF742 PF05331.11 gi|344212192|ref|YP_004796512.1| - 0.071 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) GAF PF01590.26 gi|344212192|ref|YP_004796512.1| - 0.092 13.4 0.0 0.19 12.4 0.0 1.8 1 1 0 1 1 1 0 GAF domain HTH_10 PF04967.12 gi|344212192|ref|YP_004796512.1| - 0.11 12.4 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|344212192|ref|YP_004796512.1| - 0.16 11.7 0.2 0.42 10.3 0.0 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 FAA_hydrolase PF01557.18 gi|344212193|ref|YP_004796513.1| - 1.6e-20 73.8 0.0 1.3e-19 70.8 0.0 2.1 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrkA_C PF02080.21 gi|344212193|ref|YP_004796513.1| - 0.027 14.3 0.2 0.071 12.9 0.2 1.7 1 0 0 1 1 1 0 TrkA-C domain Methyltransf_25 PF13649.6 gi|344212194|ref|YP_004796514.1| - 2e-13 50.9 0.1 3.5e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344212194|ref|YP_004796514.1| - 1e-12 48.5 0.1 1.8e-12 47.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344212194|ref|YP_004796514.1| - 7.1e-08 32.5 0.0 1e-07 31.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212194|ref|YP_004796514.1| - 2.8e-07 30.4 0.1 4e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344212194|ref|YP_004796514.1| - 6.1e-07 30.1 0.2 1e-06 29.4 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|344212194|ref|YP_004796514.1| - 0.00012 21.5 0.2 0.00078 18.9 0.2 1.9 1 1 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.14 gi|344212194|ref|YP_004796514.1| - 0.00023 20.7 0.1 0.00033 20.3 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.12 gi|344212194|ref|YP_004796514.1| - 0.00032 20.4 0.0 0.00048 19.8 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|344212194|ref|YP_004796514.1| - 0.0043 16.0 0.0 0.0052 15.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.6 gi|344212194|ref|YP_004796514.1| - 0.061 14.4 0.1 0.1 13.6 0.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|344212194|ref|YP_004796514.1| - 0.074 12.4 0.3 0.096 12.1 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|344212194|ref|YP_004796514.1| - 0.1 12.2 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) Pox_MCEL PF03291.16 gi|344212194|ref|YP_004796514.1| - 0.23 10.5 0.0 0.3 10.2 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme AMP-binding PF00501.28 gi|344212195|ref|YP_004796515.1| - 1.2e-77 261.3 0.0 1.6e-77 261.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344212195|ref|YP_004796515.1| - 1.8e-22 80.1 0.5 2.8e-21 76.3 0.3 2.7 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Dpy-30 PF05186.13 gi|344212195|ref|YP_004796515.1| - 0.047 13.4 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Dpy-30 motif DUF3561 PF12084.8 gi|344212196|ref|YP_004796516.1| - 0.12 12.4 3.7 0.34 10.9 0.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) DUF872 PF05915.12 gi|344212196|ref|YP_004796516.1| - 0.12 12.5 2.3 0.12 12.5 0.6 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF745 PF05335.13 gi|344212197|ref|YP_004796517.1| - 8.1e-05 22.4 1.7 0.0001 22.1 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF745) Syntaxin-6_N PF09177.11 gi|344212197|ref|YP_004796517.1| - 0.00026 21.5 1.5 0.0004 20.9 1.5 1.2 1 0 0 1 1 1 1 Syntaxin 6, N-terminal Med9 PF07544.13 gi|344212197|ref|YP_004796517.1| - 0.0004 20.4 0.6 0.00057 19.9 0.6 1.2 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 RmuC PF02646.16 gi|344212197|ref|YP_004796517.1| - 0.0009 18.5 0.5 0.001 18.3 0.5 1.1 1 0 0 1 1 1 1 RmuC family DegS PF05384.11 gi|344212197|ref|YP_004796517.1| - 0.0012 18.4 1.5 0.0015 18.0 1.5 1.1 1 0 0 1 1 1 1 Sensor protein DegS ATG16 PF08614.11 gi|344212197|ref|YP_004796517.1| - 0.0015 18.8 2.5 0.0016 18.7 2.5 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Cast PF10174.9 gi|344212197|ref|YP_004796517.1| - 0.0023 16.2 5.8 0.0027 16.0 5.8 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF3450 PF11932.8 gi|344212197|ref|YP_004796517.1| - 0.0025 17.2 1.2 0.0029 17.0 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|344212197|ref|YP_004796517.1| - 0.0033 17.5 0.4 0.0044 17.0 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|344212197|ref|YP_004796517.1| - 0.0037 17.5 1.2 0.0056 16.9 1.2 1.4 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|344212197|ref|YP_004796517.1| - 0.0038 17.2 1.5 0.0038 17.2 1.5 1.4 1 1 0 1 1 1 1 Laminin Domain II GldM_N PF12081.8 gi|344212197|ref|YP_004796517.1| - 0.0042 17.2 1.2 0.0048 17.0 1.2 1.1 1 0 0 1 1 1 1 GldM N-terminal domain CENP-F_leu_zip PF10473.9 gi|344212197|ref|YP_004796517.1| - 0.0047 17.0 1.7 0.0055 16.7 1.7 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|344212197|ref|YP_004796517.1| - 0.0056 15.6 1.4 0.0059 15.5 1.4 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein Herpes_UL6 PF01763.16 gi|344212197|ref|YP_004796517.1| - 0.011 14.3 0.6 0.012 14.2 0.6 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like MAD PF05557.13 gi|344212197|ref|YP_004796517.1| - 0.012 14.0 2.2 0.014 13.8 2.2 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein ADIP PF11559.8 gi|344212197|ref|YP_004796517.1| - 0.013 15.5 1.0 0.018 15.1 1.0 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|344212197|ref|YP_004796517.1| - 0.014 15.8 0.9 0.022 15.2 0.8 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Phage_GP20 PF06810.11 gi|344212197|ref|YP_004796517.1| - 0.015 15.1 4.9 0.018 14.9 4.9 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Med16 PF11635.8 gi|344212197|ref|YP_004796517.1| - 0.017 13.1 0.0 0.019 12.9 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit 16 TPR_MLP1_2 PF07926.12 gi|344212197|ref|YP_004796517.1| - 0.017 15.1 3.9 0.02 15.0 3.1 1.4 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Swi5 PF07061.11 gi|344212197|ref|YP_004796517.1| - 0.02 14.9 1.8 2.3 8.3 1.8 2.3 1 1 0 1 1 1 0 Swi5 Ax_dynein_light PF10211.9 gi|344212197|ref|YP_004796517.1| - 0.025 14.5 1.8 0.031 14.2 1.8 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain DUF1202 PF06717.11 gi|344212197|ref|YP_004796517.1| - 0.038 13.4 0.7 0.042 13.3 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1202) DUF3782 PF12644.7 gi|344212197|ref|YP_004796517.1| - 0.038 14.1 1.4 0.093 12.9 1.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Prominin PF05478.11 gi|344212197|ref|YP_004796517.1| - 0.045 11.7 0.3 0.047 11.7 0.3 1.0 1 0 0 1 1 1 0 Prominin Atg14 PF10186.9 gi|344212197|ref|YP_004796517.1| - 0.048 12.8 0.2 0.048 12.7 0.2 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 T3SSipB PF16535.5 gi|344212197|ref|YP_004796517.1| - 0.048 14.1 4.6 0.055 13.9 4.6 1.0 1 0 0 1 1 1 0 Type III cell invasion protein SipB DUF948 PF06103.11 gi|344212197|ref|YP_004796517.1| - 0.051 13.8 2.7 0.13 12.5 1.6 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) DivIVA PF05103.13 gi|344212197|ref|YP_004796517.1| - 0.054 13.6 4.4 0.063 13.4 4.4 1.2 1 0 0 1 1 1 0 DivIVA protein HSBP1 PF06825.12 gi|344212197|ref|YP_004796517.1| - 0.057 13.3 0.3 4 7.4 0.2 2.2 1 1 1 2 2 2 0 Heat shock factor binding protein 1 FlaC_arch PF05377.11 gi|344212197|ref|YP_004796517.1| - 0.059 13.8 1.1 0.12 12.8 1.1 1.7 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF4795 PF16043.5 gi|344212197|ref|YP_004796517.1| - 0.063 12.9 2.3 0.072 12.7 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) LpxB PF02684.15 gi|344212197|ref|YP_004796517.1| - 0.065 12.1 0.1 0.07 11.9 0.1 1.0 1 0 0 1 1 1 0 Lipid-A-disaccharide synthetase Cnn_1N PF07989.11 gi|344212197|ref|YP_004796517.1| - 0.067 13.4 1.7 0.092 12.9 0.9 1.6 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 bZIP_1 PF00170.21 gi|344212197|ref|YP_004796517.1| - 0.073 13.2 0.6 0.12 12.5 0.6 1.4 1 0 0 1 1 1 0 bZIP transcription factor TMPIT PF07851.13 gi|344212197|ref|YP_004796517.1| - 0.076 12.2 0.3 0.082 12.1 0.3 1.0 1 0 0 1 1 1 0 TMPIT-like protein Topoisom_I PF01028.20 gi|344212197|ref|YP_004796517.1| - 0.078 12.2 0.4 0.081 12.2 0.4 1.1 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core Spc24 PF08286.11 gi|344212197|ref|YP_004796517.1| - 0.084 13.1 3.0 0.12 12.6 3.0 1.4 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF2730 PF10805.8 gi|344212197|ref|YP_004796517.1| - 0.091 12.9 1.0 0.12 12.4 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Metal_resist PF13801.6 gi|344212197|ref|YP_004796517.1| - 0.096 12.9 3.6 0.13 12.4 3.0 1.5 1 1 1 2 2 2 0 Heavy-metal resistance EMP24_GP25L PF01105.24 gi|344212197|ref|YP_004796517.1| - 0.12 12.3 0.3 0.15 12.0 0.3 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD TMF_DNA_bd PF12329.8 gi|344212197|ref|YP_004796517.1| - 0.14 12.1 4.4 0.3 11.1 4.4 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding ScdA_N PF04405.14 gi|344212197|ref|YP_004796517.1| - 0.15 11.8 0.5 1.7 8.4 0.3 2.3 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) DUF2937 PF11157.8 gi|344212197|ref|YP_004796517.1| - 0.16 11.7 1.7 3.2 7.4 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) DUF4549 PF15082.6 gi|344212197|ref|YP_004796517.1| - 0.31 10.8 2.0 2 8.2 0.4 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4549) ZapB PF06005.12 gi|344212197|ref|YP_004796517.1| - 0.41 11.1 4.7 0.62 10.6 4.7 1.2 1 0 0 1 1 1 0 Cell division protein ZapB SlyX PF04102.12 gi|344212197|ref|YP_004796517.1| - 0.45 11.2 3.1 2.3 8.9 3.1 2.0 1 1 0 1 1 1 0 SlyX XhlA PF10779.9 gi|344212197|ref|YP_004796517.1| - 0.46 10.7 3.0 0.76 10.0 1.8 1.9 1 1 1 2 2 2 0 Haemolysin XhlA PIN_2 PF10130.9 gi|344212199|ref|YP_004796519.1| - 5.8e-33 114.0 2.2 6.8e-33 113.7 2.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|344212199|ref|YP_004796519.1| - 4.2e-08 34.0 1.4 4.2e-08 34.0 1.4 1.5 1 1 1 2 2 2 1 PIN domain PIN PF01850.21 gi|344212199|ref|YP_004796519.1| - 3.6e-07 30.7 2.4 5.2e-07 30.2 2.4 1.2 1 0 0 1 1 1 1 PIN domain IL5 PF02025.15 gi|344212199|ref|YP_004796519.1| - 0.081 13.2 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 Interleukin 5 DUF4256 PF14066.6 gi|344212200|ref|YP_004796520.1| - 0.017 14.8 0.4 0.017 14.8 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4256) CARD_2 PF16739.5 gi|344212200|ref|YP_004796520.1| - 0.021 14.8 0.1 0.028 14.4 0.1 1.2 1 0 0 1 1 1 0 Caspase recruitment domain EnY2 PF10163.9 gi|344212200|ref|YP_004796520.1| - 0.033 14.6 0.8 0.04 14.3 0.8 1.1 1 0 0 1 1 1 0 Transcription factor e(y)2 CARD PF00619.21 gi|344212200|ref|YP_004796520.1| - 0.066 13.3 0.3 0.073 13.1 0.3 1.1 1 0 0 1 1 1 0 Caspase recruitment domain MS_channel PF00924.18 gi|344212201|ref|YP_004796521.1| - 1e-54 185.3 0.1 1.4e-54 184.8 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel CRS1_YhbY PF01985.21 gi|344212202|ref|YP_004796522.1| - 2.5e-11 43.6 0.0 3.1e-11 43.3 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Tubulin PF00091.25 gi|344212202|ref|YP_004796522.1| - 0.012 15.8 0.0 0.014 15.6 0.0 1.1 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain Glyco_hydro_10 PF00331.20 gi|344212202|ref|YP_004796522.1| - 0.087 12.0 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 10 CelTOS PF18659.1 gi|344212202|ref|YP_004796522.1| - 0.16 12.4 0.6 0.6 10.6 0.8 1.7 1 1 1 2 2 2 0 Cell-traversal protein for ookinetes and sporozoites Rpr2 PF04032.16 gi|344212203|ref|YP_004796523.1| - 7.6e-13 48.6 0.6 9.5e-13 48.2 0.6 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Glyco_trans_1_4 PF13692.6 gi|344212204|ref|YP_004796524.1| - 2e-20 73.6 0.0 6e-19 68.8 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|344212204|ref|YP_004796524.1| - 3.3e-19 69.1 0.0 5.1e-18 65.2 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|344212204|ref|YP_004796524.1| - 3.3e-16 59.4 0.2 7.4e-16 58.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212204|ref|YP_004796524.1| - 4.6e-16 59.3 0.1 9.6e-16 58.2 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344212204|ref|YP_004796524.1| - 5.6e-09 36.6 0.1 1.5e-08 35.3 0.1 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain MFS_1 PF07690.16 gi|344212205|ref|YP_004796525.1| - 3.1e-19 69.1 65.4 9.8e-10 37.9 35.4 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344212205|ref|YP_004796525.1| - 2e-08 33.5 16.6 3.4e-05 22.9 10.6 2.2 2 0 0 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|344212205|ref|YP_004796525.1| - 0.00036 19.5 2.5 0.00036 19.5 2.5 3.5 2 2 2 4 4 4 1 Sugar (and other) transporter Nuc_H_symport PF03825.16 gi|344212205|ref|YP_004796525.1| - 0.0012 17.9 2.6 0.0028 16.7 2.6 1.6 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_2 PF13347.6 gi|344212205|ref|YP_004796525.1| - 0.0056 15.3 7.4 0.0056 15.3 7.4 2.7 3 0 0 3 3 3 1 MFS/sugar transport protein Glycos_transf_1 PF00534.20 gi|344212206|ref|YP_004796526.1| - 4.4e-27 94.7 0.0 1.1e-26 93.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212206|ref|YP_004796526.1| - 4.5e-27 95.1 0.2 1.2e-26 93.7 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|344212206|ref|YP_004796526.1| - 7.5e-21 75.0 0.0 6.3e-19 68.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|344212206|ref|YP_004796526.1| - 5.6e-17 62.6 0.8 1.9e-15 57.6 0.4 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344212206|ref|YP_004796526.1| - 3.5e-05 24.1 0.0 9.3e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344212206|ref|YP_004796526.1| - 0.0019 18.2 0.0 0.0072 16.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like Peptidase_M48 PF01435.18 gi|344212208|ref|YP_004796528.1| - 1.1e-25 90.5 0.0 4.7e-25 88.5 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344212208|ref|YP_004796528.1| - 3.9e-06 26.3 0.0 7.4e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF45 PF01863.17 gi|344212208|ref|YP_004796528.1| - 0.0018 18.4 0.0 0.0028 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF45 SprT-like PF10263.9 gi|344212208|ref|YP_004796528.1| - 0.048 13.5 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF2268 PF10026.9 gi|344212208|ref|YP_004796528.1| - 0.19 11.3 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Amidase PF01425.21 gi|344212209|ref|YP_004796529.1| - 7e-145 483.4 0.5 8.6e-145 483.1 0.5 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|344212210|ref|YP_004796530.1| - 1.9e-13 50.4 3.1 3.2e-13 49.7 3.1 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit TFIIB PF00382.19 gi|344212211|ref|YP_004796531.1| - 7.5e-42 141.2 0.1 1e-20 73.6 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344212211|ref|YP_004796531.1| - 7.7e-18 63.7 3.7 1.8e-17 62.5 3.7 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|344212211|ref|YP_004796531.1| - 0.0051 16.9 0.0 0.056 13.5 0.0 2.1 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|344212211|ref|YP_004796531.1| - 0.0058 16.1 0.1 0.0058 16.1 0.1 3.8 5 0 0 5 5 5 1 Sigma-70, region 4 zf_UBZ PF18439.1 gi|344212211|ref|YP_004796531.1| - 0.018 14.6 1.4 2.7 7.6 0.1 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|344212211|ref|YP_004796531.1| - 0.062 13.0 1.7 0.17 11.6 1.7 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain HTH_Tnp_ISL3 PF13542.6 gi|344212211|ref|YP_004796531.1| - 0.07 12.6 0.1 0.22 10.9 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 RNA_POL_M_15KD PF02150.16 gi|344212211|ref|YP_004796531.1| - 0.23 11.3 1.5 0.47 10.4 1.5 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|344212211|ref|YP_004796531.1| - 0.57 10.3 5.1 2.7 8.2 0.7 2.4 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.28 gi|344212212|ref|YP_004796532.1| - 5.2e-13 49.2 0.3 6.7e-13 48.8 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain DUF2061 PF09834.9 gi|344212213|ref|YP_004796533.1| - 1.1e-17 64.2 3.8 1.3e-17 64.0 3.8 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) Asn_synthase PF00733.21 gi|344212214|ref|YP_004796534.1| - 2e-34 119.9 5.2 8.3e-20 71.7 1.1 2.1 1 1 1 2 2 2 2 Asparagine synthase PSK_trans_fac PF07704.11 gi|344212214|ref|YP_004796534.1| - 0.035 14.9 0.6 0.035 14.9 0.6 3.3 2 1 2 4 4 4 0 Rv0623-like transcription factor PHP_C PF13263.6 gi|344212215|ref|YP_004796535.1| - 3.6e-24 84.3 0.8 2.7e-23 81.5 0.5 2.3 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|344212215|ref|YP_004796535.1| - 4.5e-08 33.6 0.0 5.4e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 PHP domain Radical_SAM PF04055.21 gi|344212216|ref|YP_004796536.1| - 3.7e-22 79.5 0.1 3e-21 76.5 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|344212216|ref|YP_004796536.1| - 9.4e-11 42.1 0.0 2.3e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|344212216|ref|YP_004796536.1| - 5e-06 26.6 0.0 2.7e-05 24.3 0.0 2.1 2 1 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|344212216|ref|YP_004796536.1| - 4.4e-05 23.9 0.0 0.00011 22.6 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain BRCC36_C PF18110.1 gi|344212216|ref|YP_004796536.1| - 0.047 13.8 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 BRCC36 C-terminal helical domain PaaB PF06243.11 gi|344212217|ref|YP_004796537.1| - 3e-09 37.0 0.0 3.3e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Cu-oxidase_2 PF07731.14 gi|344212218|ref|YP_004796538.1| - 2e-29 102.0 14.1 2.3e-20 72.7 2.7 3.0 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|344212218|ref|YP_004796538.1| - 6.6e-23 81.0 6.2 6.8e-18 64.8 1.3 2.4 2 0 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|344212218|ref|YP_004796538.1| - 3.1e-09 37.2 0.0 8.5e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase TAT_signal PF10518.9 gi|344212218|ref|YP_004796538.1| - 0.0003 20.5 1.4 0.00047 19.9 1.4 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|344212218|ref|YP_004796538.1| - 0.0053 16.9 0.1 0.21 11.7 0.0 2.7 2 2 0 2 2 2 1 Cupredoxin-like domain HTH_20 PF12840.7 gi|344212219|ref|YP_004796539.1| - 1.5e-08 34.5 0.1 2.5e-08 33.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344212219|ref|YP_004796539.1| - 1e-05 25.2 0.1 1.9e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|344212219|ref|YP_004796539.1| - 0.00022 21.0 0.1 0.00035 20.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.16 gi|344212219|ref|YP_004796539.1| - 0.002 17.6 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|344212219|ref|YP_004796539.1| - 0.054 13.4 0.1 0.075 12.9 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.15 gi|344212219|ref|YP_004796539.1| - 0.081 13.0 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase SNARE_assoc PF09335.11 gi|344212220|ref|YP_004796540.1| - 0.044 14.3 3.5 0.12 12.8 3.4 1.8 1 1 0 1 1 1 0 SNARE associated Golgi protein DUF5353 PF17304.2 gi|344212220|ref|YP_004796540.1| - 0.17 11.7 3.1 0.1 12.4 1.4 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5353) CrgA PF06781.12 gi|344212220|ref|YP_004796540.1| - 0.35 10.9 1.4 0.4 10.8 0.6 1.5 1 1 0 1 1 1 0 Cell division protein CrgA TraL PF07178.11 gi|344212220|ref|YP_004796540.1| - 1.3 9.5 5.3 2.7 8.5 0.1 2.5 1 1 1 2 2 2 0 TraL protein CPP1-like PF11833.8 gi|344212221|ref|YP_004796541.1| - 0.025 14.2 1.5 0.028 14.1 1.5 1.0 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DHNA PF04038.12 gi|344212221|ref|YP_004796541.1| - 0.047 14.2 0.0 0.047 14.2 0.0 1.1 1 0 0 1 1 1 0 Dihydroneopterin aldolase DUF3302 PF11742.8 gi|344212222|ref|YP_004796542.1| - 5 7.3 8.2 0.23 11.6 0.8 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3302) DUF2249 PF10006.9 gi|344212223|ref|YP_004796543.1| - 7.5e-13 48.1 0.4 1.1e-12 47.6 0.4 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|344212223|ref|YP_004796543.1| - 0.00019 21.2 0.0 0.00051 19.8 0.0 1.6 2 0 0 2 2 2 1 Sulfurtransferase TusA GlutR_dimer PF00745.20 gi|344212224|ref|YP_004796544.1| - 1.3e-10 41.6 1.2 1.5e-10 41.4 1.2 1.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Mg_chelatase_C PF13335.6 gi|344212224|ref|YP_004796544.1| - 0.0044 17.6 1.5 0.0056 17.3 1.5 1.1 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal PriC PF07445.12 gi|344212224|ref|YP_004796544.1| - 0.006 16.5 1.5 0.0073 16.2 1.5 1.2 1 0 0 1 1 1 1 Primosomal replication protein priC TetR_C_7 PF14246.6 gi|344212224|ref|YP_004796544.1| - 0.027 14.5 0.8 0.03 14.3 0.8 1.1 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain ANAPC2 PF08672.11 gi|344212224|ref|YP_004796544.1| - 0.097 13.2 0.1 0.16 12.5 0.1 1.4 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 HU-DNA_bdg PF14848.6 gi|344212224|ref|YP_004796544.1| - 0.11 12.5 0.3 8.7 6.4 0.1 2.0 1 1 1 2 2 2 0 DNA-binding domain Cupin_2 PF07883.11 gi|344212225|ref|YP_004796545.1| - 6e-11 41.9 0.0 1.1e-10 41.1 0.0 1.5 2 0 0 2 2 2 1 Cupin domain AraC_binding_2 PF14525.6 gi|344212225|ref|YP_004796545.1| - 0.00037 20.2 0.0 0.00037 20.2 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain Pirin_C_2 PF17954.1 gi|344212225|ref|YP_004796545.1| - 0.0018 18.4 0.0 0.003 17.7 0.0 1.3 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain HutD PF05962.11 gi|344212225|ref|YP_004796545.1| - 0.12 12.4 0.0 0.16 11.9 0.0 1.4 1 1 0 1 1 1 0 HutD Cupin_3 PF05899.12 gi|344212225|ref|YP_004796545.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) DUF2249 PF10006.9 gi|344212226|ref|YP_004796546.1| - 4.5e-24 84.1 0.1 5e-24 84.0 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|344212226|ref|YP_004796546.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF3978 PF13123.6 gi|344212229|ref|YP_004796549.1| - 0.18 11.5 0.0 0.25 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3978) AIRS PF00586.24 gi|344212230|ref|YP_004796550.1| - 2e-40 137.3 5.1 7.1e-23 81.1 0.1 3.0 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|344212230|ref|YP_004796550.1| - 1.5e-39 135.6 6.9 3.4e-31 108.5 1.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|344212230|ref|YP_004796550.1| - 7.4e-08 32.8 0.5 2.2e-07 31.3 0.5 1.9 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|344212230|ref|YP_004796550.1| - 0.15 12.4 0.9 3.6 8.0 0.0 2.6 2 0 0 2 2 2 0 GHMP kinases C terminal HATPase_c PF02518.26 gi|344212231|ref|YP_004796551.1| - 3.3e-19 69.5 0.0 6.5e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344212231|ref|YP_004796551.1| - 2.5e-11 43.5 3.8 1.7e-10 40.7 0.9 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344212231|ref|YP_004796551.1| - 1.1e-05 25.7 0.0 2.2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|344212231|ref|YP_004796551.1| - 6.9e-05 23.1 1.1 0.00013 22.2 0.1 2.1 2 1 1 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|344212231|ref|YP_004796551.1| - 0.00045 20.2 0.1 0.0028 17.7 0.0 2.3 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|344212231|ref|YP_004796551.1| - 0.0017 18.6 0.0 0.006 16.8 0.0 1.9 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|344212231|ref|YP_004796551.1| - 0.0061 16.5 0.0 0.014 15.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|344212231|ref|YP_004796551.1| - 0.019 14.8 0.0 0.047 13.5 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FIST PF08495.10 gi|344212232|ref|YP_004796552.1| - 3.9e-28 98.6 3.1 1.1e-27 97.1 0.8 2.1 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 gi|344212232|ref|YP_004796552.1| - 1.7e-20 73.3 0.1 4.1e-20 72.1 0.1 1.7 1 0 0 1 1 1 1 FIST C domain His_biosynth PF00977.21 gi|344212234|ref|YP_004796554.1| - 8.8e-80 267.4 0.4 1e-79 267.3 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|344212234|ref|YP_004796554.1| - 8e-08 31.7 0.0 8.5e-05 21.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|344212234|ref|YP_004796554.1| - 1.5e-06 27.7 1.4 0.0005 19.5 0.3 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|344212234|ref|YP_004796554.1| - 7e-06 25.6 2.1 0.0023 17.4 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|344212234|ref|YP_004796554.1| - 0.0015 18.0 0.1 0.0052 16.2 0.1 1.8 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|344212234|ref|YP_004796554.1| - 0.0048 16.2 0.2 0.13 11.5 0.0 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase IMPDH PF00478.25 gi|344212234|ref|YP_004796554.1| - 0.012 14.6 0.4 0.025 13.6 0.1 1.6 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|344212234|ref|YP_004796554.1| - 0.016 14.5 0.5 0.031 13.5 0.0 1.6 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase PcrB PF01884.17 gi|344212234|ref|YP_004796554.1| - 0.085 12.3 0.1 0.14 11.6 0.1 1.3 1 0 0 1 1 1 0 PcrB family zinc_ribbon_2 PF13240.6 gi|344212235|ref|YP_004796555.1| - 1e-06 28.3 18.5 0.001 18.7 5.6 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|344212235|ref|YP_004796555.1| - 0.0043 17.1 9.1 0.0083 16.1 9.1 1.5 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|344212235|ref|YP_004796555.1| - 0.11 12.6 9.7 0.34 11.0 1.4 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|344212235|ref|YP_004796555.1| - 0.53 10.4 13.5 1.6 8.9 2.8 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Cytochrom_c3_2 PF14537.6 gi|344212235|ref|YP_004796555.1| - 3.6 8.1 10.4 6.9 7.2 2.1 2.2 1 1 1 2 2 2 0 Cytochrome c3 DUF1451 PF07295.11 gi|344212235|ref|YP_004796555.1| - 5.2 7.1 12.4 0.35 10.9 2.9 2.2 1 1 1 2 2 2 0 Zinc-ribbon containing domain RNA_pol_L_2 PF13656.6 gi|344212236|ref|YP_004796556.1| - 1e-16 60.4 0.0 1.2e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|344212236|ref|YP_004796556.1| - 0.00017 20.9 0.0 0.00027 20.3 0.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zf-C2H2 PF00096.26 gi|344212237|ref|YP_004796557.1| - 4.5e-05 23.7 0.1 6.6e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|344212237|ref|YP_004796557.1| - 0.031 15.1 0.2 0.046 14.6 0.2 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger PyrI_C PF02748.15 gi|344212237|ref|YP_004796557.1| - 0.078 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain V_ATPase_prox PF18274.1 gi|344212237|ref|YP_004796557.1| - 0.22 11.5 1.6 0.51 10.3 1.1 1.7 1 1 1 2 2 2 0 Vacuolar ATPase Subunit I N-terminal proximal lobe COX3 PF00510.18 gi|344212239|ref|YP_004796559.1| - 1.6e-35 123.2 20.2 2.1e-35 122.8 20.2 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Zn_Tnp_IS1595 PF12760.7 gi|344212240|ref|YP_004796560.1| - 0.017 15.1 0.0 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|344212240|ref|YP_004796560.1| - 0.05 13.7 0.2 0.073 13.2 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain LptE PF04390.12 gi|344212241|ref|YP_004796561.1| - 0.0023 18.6 1.4 1.6 9.4 1.6 2.2 1 1 0 1 1 1 1 Lipopolysaccharide-assembly PGF-CTERM PF18204.1 gi|344212241|ref|YP_004796561.1| - 0.062 13.3 1.5 0.062 13.3 1.5 1.8 2 0 0 2 2 2 0 PGF-CTERM motif ADH_N PF08240.12 gi|344212242|ref|YP_004796562.1| - 2.5e-29 101.3 1.2 2.5e-29 101.3 1.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344212242|ref|YP_004796562.1| - 4.3e-17 62.3 1.0 6.4e-17 61.8 0.3 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|344212242|ref|YP_004796562.1| - 3.1e-07 31.5 0.2 5.4e-07 30.7 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|344212242|ref|YP_004796562.1| - 0.64 10.1 4.7 2.2 8.4 4.7 1.9 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Toxin_25 PF08095.11 gi|344212243|ref|YP_004796563.1| - 1.1 9.2 8.2 9 6.4 1.4 2.7 2 0 0 2 2 2 0 Hefutoxin family Usp PF00582.26 gi|344212244|ref|YP_004796564.1| - 9.9e-19 68.2 2.3 1.3e-18 67.8 2.3 1.2 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.19 gi|344212244|ref|YP_004796564.1| - 0.013 15.5 0.2 0.02 14.9 0.1 1.5 1 1 0 1 1 1 0 B12 binding domain ABC_tran PF00005.27 gi|344212245|ref|YP_004796565.1| - 1.2e-31 110.0 0.0 1.6e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212245|ref|YP_004796565.1| - 2.3e-14 53.9 0.8 8.6e-07 29.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344212245|ref|YP_004796565.1| - 5.9e-06 25.9 0.3 0.00013 21.4 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344212245|ref|YP_004796565.1| - 6.7e-06 26.0 0.0 8.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|344212245|ref|YP_004796565.1| - 8.3e-05 22.3 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|344212245|ref|YP_004796565.1| - 0.0002 21.1 0.0 0.00028 20.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344212245|ref|YP_004796565.1| - 0.0003 20.7 0.0 0.00065 19.6 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|344212245|ref|YP_004796565.1| - 0.0014 19.2 0.0 0.002 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344212245|ref|YP_004796565.1| - 0.0024 18.3 0.0 0.03 14.7 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|344212245|ref|YP_004796565.1| - 0.0046 17.2 0.1 0.026 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|344212245|ref|YP_004796565.1| - 0.033 14.1 0.0 0.072 13.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|344212245|ref|YP_004796565.1| - 0.052 13.9 0.1 0.085 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|344212245|ref|YP_004796565.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|344212245|ref|YP_004796565.1| - 0.075 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|344212245|ref|YP_004796565.1| - 0.084 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|344212245|ref|YP_004796565.1| - 0.085 13.0 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|344212245|ref|YP_004796565.1| - 0.11 11.6 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|344212245|ref|YP_004796565.1| - 0.13 12.7 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ATP_bind_1 PF03029.17 gi|344212245|ref|YP_004796565.1| - 0.14 12.0 0.2 0.24 11.2 0.2 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|344212245|ref|YP_004796565.1| - 0.14 12.1 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MukB PF04310.12 gi|344212245|ref|YP_004796565.1| - 0.16 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal NTPase_1 PF03266.15 gi|344212245|ref|YP_004796565.1| - 0.18 11.7 0.3 6.9 6.6 0.0 2.8 2 1 1 3 3 3 0 NTPase AAA_7 PF12775.7 gi|344212245|ref|YP_004796565.1| - 0.2 11.1 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|344212246|ref|YP_004796566.1| - 8.8e-32 110.5 0.0 1.3e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212246|ref|YP_004796566.1| - 3.6e-11 43.4 2.1 1.8e-05 24.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|344212246|ref|YP_004796566.1| - 5.1e-10 39.0 0.1 1.3e-09 37.8 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|344212246|ref|YP_004796566.1| - 6.8e-07 30.0 0.1 1.3e-06 29.1 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|344212246|ref|YP_004796566.1| - 7.8e-06 25.5 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|344212246|ref|YP_004796566.1| - 0.00016 21.2 0.3 0.051 13.0 0.1 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|344212246|ref|YP_004796566.1| - 0.00071 19.6 0.1 0.0021 18.2 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|344212246|ref|YP_004796566.1| - 0.0012 19.3 0.0 0.0017 18.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344212246|ref|YP_004796566.1| - 0.0031 17.4 0.0 0.0052 16.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|344212246|ref|YP_004796566.1| - 0.0044 16.8 0.1 0.25 11.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|344212246|ref|YP_004796566.1| - 0.092 12.7 0.1 9.1 6.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) FeoB_N PF02421.18 gi|344212246|ref|YP_004796566.1| - 0.1 12.2 1.9 0.46 10.0 0.2 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_14 PF13173.6 gi|344212246|ref|YP_004796566.1| - 0.12 12.4 0.0 0.45 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|344212246|ref|YP_004796566.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|344212247|ref|YP_004796567.1| - 2.9e-37 128.3 36.7 3.7e-37 127.9 36.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Lysis_col PF02402.16 gi|344212247|ref|YP_004796567.1| - 0.034 13.8 0.8 0.1 12.3 0.1 2.1 2 0 0 2 2 2 0 Lysis protein BPD_transp_2 PF02653.16 gi|344212248|ref|YP_004796568.1| - 3.8e-42 144.3 41.1 4.8e-42 144.0 41.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1656 PF07869.12 gi|344212248|ref|YP_004796568.1| - 0.02 14.9 0.4 0.02 14.9 0.4 4.3 5 0 0 5 5 5 0 Protein of unknown function (DUF1656) Peripla_BP_6 PF13458.6 gi|344212249|ref|YP_004796569.1| - 1.6e-48 166.1 1.7 2e-48 165.8 1.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|344212249|ref|YP_004796569.1| - 1.9e-15 56.9 0.1 9e-15 54.6 0.1 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|344212249|ref|YP_004796569.1| - 4.4e-13 48.9 0.4 1.4e-12 47.3 0.4 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain SPAN-X PF07458.12 gi|344212249|ref|YP_004796569.1| - 0.09 13.2 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Sperm protein associated with nucleus, mapped to X chromosome TAT_signal PF10518.9 gi|344212249|ref|YP_004796569.1| - 0.11 12.4 1.1 0.29 11.0 1.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Na_sulph_symp PF00939.19 gi|344212250|ref|YP_004796570.1| - 2e-79 267.8 38.0 2.4e-79 267.6 38.0 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|344212250|ref|YP_004796570.1| - 8.6e-38 130.2 43.5 8.6e-38 130.2 43.5 2.5 2 1 1 3 3 3 2 Citrate transporter HTH_31 PF13560.6 gi|344212251|ref|YP_004796571.1| - 0.0061 16.9 0.1 0.008 16.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|344212251|ref|YP_004796571.1| - 0.0072 16.3 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|344212251|ref|YP_004796571.1| - 0.038 14.1 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix MLD PF11647.8 gi|344212251|ref|YP_004796571.1| - 0.1 12.9 0.2 0.19 12.0 0.2 1.4 1 1 0 1 1 1 0 Membrane Localization Domain Met_10 PF02475.16 gi|344212252|ref|YP_004796572.1| - 1.3e-58 198.1 0.0 1.6e-58 197.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|344212252|ref|YP_004796572.1| - 1.7e-13 50.2 0.0 5.7e-13 48.5 0.0 1.9 2 0 0 2 2 2 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|344212252|ref|YP_004796572.1| - 3.9e-08 33.9 0.1 1.3e-07 32.3 0.1 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|344212252|ref|YP_004796572.1| - 2.4e-07 30.5 0.0 3.6e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|344212252|ref|YP_004796572.1| - 6.5e-06 25.8 0.0 5.8e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|344212252|ref|YP_004796572.1| - 2e-05 24.1 0.0 3.1e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|344212252|ref|YP_004796572.1| - 6.6e-05 23.5 0.0 0.00016 22.3 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212252|ref|YP_004796572.1| - 0.00015 21.6 0.0 0.00027 20.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|344212252|ref|YP_004796572.1| - 0.0014 19.6 0.4 0.032 15.2 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.18 gi|344212252|ref|YP_004796572.1| - 0.0024 17.6 0.0 0.0041 16.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|344212252|ref|YP_004796572.1| - 0.0035 17.0 0.0 0.0085 15.8 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 DNA_methylase PF00145.17 gi|344212252|ref|YP_004796572.1| - 0.008 15.5 0.0 0.012 15.0 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase TRM PF02005.16 gi|344212252|ref|YP_004796572.1| - 0.022 13.9 0.0 0.045 12.9 0.0 1.5 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_18 PF12847.7 gi|344212252|ref|YP_004796572.1| - 0.069 13.1 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344212252|ref|YP_004796572.1| - 0.14 12.9 0.0 0.39 11.5 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|344212252|ref|YP_004796572.1| - 0.25 11.0 0.0 0.34 10.5 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase TP_methylase PF00590.20 gi|344212253|ref|YP_004796573.1| - 1e-19 71.4 1.3 1.2e-19 71.1 1.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.10 gi|344212254|ref|YP_004796574.1| - 3.8e-17 62.7 24.5 1.4e-16 60.8 24.2 1.9 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) PGF-CTERM PF18204.1 gi|344212255|ref|YP_004796575.1| - 0.0012 18.8 8.6 0.0021 18.0 8.6 1.4 1 0 0 1 1 1 1 PGF-CTERM motif Pilin_N PF07790.11 gi|344212255|ref|YP_004796575.1| - 0.021 15.7 5.0 0.14 13.1 0.4 4.3 2 1 0 2 2 2 0 Archaeal Type IV pilin, N-terminal PGF-CTERM PF18204.1 gi|344212256|ref|YP_004796576.1| - 0.0012 18.7 8.6 0.0021 18.0 8.6 1.4 1 0 0 1 1 1 1 PGF-CTERM motif Trypan_PARP PF05887.11 gi|344212256|ref|YP_004796576.1| - 0.0017 18.4 24.8 0.0096 15.9 13.0 4.0 3 0 0 3 3 3 2 Procyclic acidic repetitive protein (PARP) FtsK_SpoIIIE_N PF12538.8 gi|344212256|ref|YP_004796576.1| - 0.012 15.8 0.1 0.088 13.0 0.1 2.6 1 0 0 1 1 1 0 DNA transporter Pga1 PF10333.9 gi|344212256|ref|YP_004796576.1| - 0.037 13.9 0.3 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 GPI-Mannosyltransferase II co-activator Pilin_N PF07790.11 gi|344212256|ref|YP_004796576.1| - 0.14 13.1 0.2 0.14 13.1 0.2 4.4 4 1 0 4 4 4 0 Archaeal Type IV pilin, N-terminal Glyoxalase PF00903.25 gi|344212257|ref|YP_004796577.1| - 1.1e-20 74.2 3.6 2.5e-12 47.1 0.4 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|344212257|ref|YP_004796577.1| - 1.6e-08 35.3 2.9 0.00016 22.4 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|344212257|ref|YP_004796577.1| - 2.1e-08 34.4 1.6 0.0084 16.4 0.1 3.0 2 1 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|344212257|ref|YP_004796577.1| - 7.7e-06 26.1 1.0 0.37 10.9 0.1 4.0 2 2 1 3 3 3 2 Glyoxalase-like domain DUF1772 PF08592.11 gi|344212258|ref|YP_004796578.1| - 0.63 10.3 10.0 0.32 11.3 4.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) MMR_HSR1_Xtn PF16897.5 gi|344212259|ref|YP_004796579.1| - 9.2e-30 102.8 0.4 3e-29 101.1 0.1 2.0 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|344212259|ref|YP_004796579.1| - 1.4e-22 79.9 0.0 2.5e-22 79.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|344212259|ref|YP_004796579.1| - 2.6e-16 59.4 0.0 4.6e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|344212259|ref|YP_004796579.1| - 2.4e-12 46.6 0.1 1.8e-11 43.8 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|344212259|ref|YP_004796579.1| - 1e-05 25.5 0.1 0.027 14.4 0.1 2.7 2 0 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|344212259|ref|YP_004796579.1| - 4.1e-05 23.7 0.0 0.12 12.4 0.0 2.5 2 0 0 2 2 2 2 Dynamin family MeaB PF03308.16 gi|344212259|ref|YP_004796579.1| - 0.0074 15.3 0.2 0.092 11.7 0.0 2.3 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AIG1 PF04548.16 gi|344212259|ref|YP_004796579.1| - 0.01 15.2 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_28 PF13521.6 gi|344212259|ref|YP_004796579.1| - 0.018 15.3 0.1 0.065 13.5 0.0 2.0 2 0 0 2 2 1 0 AAA domain Arf PF00025.21 gi|344212259|ref|YP_004796579.1| - 0.026 14.0 0.1 0.81 9.1 0.0 2.4 2 1 0 2 2 2 0 ADP-ribosylation factor family ABC_tran PF00005.27 gi|344212259|ref|YP_004796579.1| - 0.029 14.9 0.0 0.079 13.5 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|344212259|ref|YP_004796579.1| - 0.038 14.4 0.0 0.097 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|344212259|ref|YP_004796579.1| - 0.051 14.1 0.2 0.53 10.8 0.2 2.4 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|344212259|ref|YP_004796579.1| - 0.069 12.7 0.8 1.9 8.0 0.1 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 gi|344212259|ref|YP_004796579.1| - 0.073 12.5 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Nairo_nucleo PF02477.15 gi|344212259|ref|YP_004796579.1| - 0.14 10.9 0.0 0.2 10.4 0.0 1.1 1 0 0 1 1 1 0 Nucleocapsid N protein DUF2813 PF11398.8 gi|344212259|ref|YP_004796579.1| - 0.19 10.9 0.0 0.36 10.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) ATP_bind_1 PF03029.17 gi|344212259|ref|YP_004796579.1| - 0.19 11.5 0.0 28 4.4 0.0 2.6 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein ABC_tran_CTD PF16326.5 gi|344212259|ref|YP_004796579.1| - 4.4 7.6 9.6 0.23 11.8 3.5 2.0 2 0 0 2 2 2 0 ABC transporter C-terminal domain Ribosomal_L11 PF00298.19 gi|344212261|ref|YP_004796581.1| - 2.3e-20 72.9 0.0 3.6e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|344212261|ref|YP_004796581.1| - 2.4e-18 65.7 0.1 3.9e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.21 gi|344212262|ref|YP_004796582.1| - 2e-40 138.7 0.0 2.5e-40 138.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|344212263|ref|YP_004796583.1| - 8.8e-22 77.1 0.0 1.8e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|344212263|ref|YP_004796583.1| - 9.4e-16 57.6 0.0 1.6e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P DUF2457 PF10446.9 gi|344212263|ref|YP_004796583.1| - 7.5 5.6 18.9 11 5.1 18.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Cwf_Cwc_15 PF04889.12 gi|344212263|ref|YP_004796583.1| - 7.6 6.2 11.6 13 5.5 11.6 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Ribosomal_60s PF00428.19 gi|344212264|ref|YP_004796584.1| - 6.2e-17 62.0 17.8 8.4e-17 61.5 17.8 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|344212264|ref|YP_004796584.1| - 0.0082 14.7 4.7 0.0092 14.6 4.7 1.0 1 0 0 1 1 1 1 RNA polymerase I specific transcription initiation factor RRN3 NOA36 PF06524.12 gi|344212264|ref|YP_004796584.1| - 1.1 8.5 10.8 1.2 8.4 10.8 1.1 1 0 0 1 1 1 0 NOA36 protein Sigma70_ner PF04546.13 gi|344212264|ref|YP_004796584.1| - 1.3 8.9 11.5 1.6 8.6 11.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region CDC45 PF02724.14 gi|344212264|ref|YP_004796584.1| - 7.6 4.7 7.0 8.2 4.6 7.0 1.0 1 0 0 1 1 1 0 CDC45-like protein DUF2457 PF10446.9 gi|344212264|ref|YP_004796584.1| - 8.5 5.4 13.7 7.8 5.5 13.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CARDB PF07705.11 gi|344212265|ref|YP_004796585.1| - 8.1e-16 58.2 47.4 0.00024 21.3 1.5 8.3 7 1 2 9 9 9 6 CARDB N_BRCA1_IG PF16158.5 gi|344212265|ref|YP_004796585.1| - 4.8e-05 24.0 8.0 0.016 15.9 0.1 5.4 7 0 0 7 7 7 2 Ig-like domain from next to BRCA1 gene Fn3-like PF14310.6 gi|344212265|ref|YP_004796585.1| - 0.0005 20.1 0.2 0.74 10.0 0.1 5.1 5 0 0 5 5 5 1 Fibronectin type III-like domain BsuPI PF12690.7 gi|344212265|ref|YP_004796585.1| - 0.00068 19.6 7.3 0.23 11.5 0.0 6.4 7 0 0 7 7 7 1 Intracellular proteinase inhibitor DUF4981 PF16353.5 gi|344212265|ref|YP_004796585.1| - 0.0008 19.8 6.6 8.5 6.9 0.1 6.0 7 0 0 7 7 7 1 Domain of unknown function(DUF4981) DUF4878 PF12870.7 gi|344212265|ref|YP_004796585.1| - 0.03 14.6 4.5 0.18 12.1 0.2 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4878) Transglut_C PF00927.22 gi|344212265|ref|YP_004796585.1| - 0.13 12.4 1.8 15 5.8 0.0 4.6 5 0 0 5 5 5 0 Transglutaminase family, C-terminal ig like domain DUF2393 PF09624.10 gi|344212265|ref|YP_004796585.1| - 0.18 11.8 0.2 3.3 7.7 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) NPCBM_assoc PF10633.9 gi|344212265|ref|YP_004796585.1| - 1.3 9.3 32.1 0.26 11.6 0.6 8.8 8 4 3 11 11 10 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF5001 PF16392.5 gi|344212265|ref|YP_004796585.1| - 1.7 8.6 6.6 58 3.7 0.0 5.4 6 0 0 6 6 6 0 Ig-like domain Glyco_hydro_2 PF00703.21 gi|344212265|ref|YP_004796585.1| - 3.3 8.4 25.7 1.6 9.4 0.2 6.8 7 0 0 7 7 7 0 Glycosyl hydrolases family 2 E1_DerP2_DerF2 PF02221.15 gi|344212265|ref|YP_004796585.1| - 6.3 7.2 6.1 16 5.9 0.1 4.3 4 1 0 4 4 4 0 ML domain Bactofilin PF04519.13 gi|344212271|ref|YP_004796591.1| - 0.0001 22.5 5.4 0.0001 22.5 5.4 3.5 2 1 1 3 3 3 2 Polymer-forming cytoskeletal Ribosomal_S13_N PF08069.12 gi|344212273|ref|YP_004796593.1| - 9.4e-23 80.0 0.1 1.6e-22 79.3 0.1 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|344212273|ref|YP_004796593.1| - 4.5e-14 52.4 0.0 7.1e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF4298 PF14131.6 gi|344212273|ref|YP_004796593.1| - 0.021 14.8 0.3 0.042 13.8 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4298) STAT2_C PF12188.8 gi|344212273|ref|YP_004796593.1| - 0.058 13.3 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Signal transducer and activator of transcription 2 C terminal Gln_amidase PF15644.6 gi|344212274|ref|YP_004796594.1| - 0.15 13.1 1.9 0.46 11.5 1.1 2.4 1 1 1 2 2 2 0 Papain fold toxin 1, glutamine deamidase PhageP22-tail PF09251.10 gi|344212275|ref|YP_004796595.1| - 0.055 11.8 0.1 0.055 11.8 0.1 1.0 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike Ribosomal_S3Ae PF01015.18 gi|344212276|ref|YP_004796596.1| - 3.4e-60 203.1 1.3 3.7e-60 203.0 1.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family RexA PF15969.5 gi|344212276|ref|YP_004796596.1| - 0.029 13.9 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 Intracellular sensor of Lambda phage, Abi component Copper-bind PF00127.20 gi|344212277|ref|YP_004796597.1| - 1.3e-12 48.0 0.0 2.4e-12 47.1 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|344212277|ref|YP_004796597.1| - 0.0006 19.6 3.1 0.0013 18.5 3.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|344212277|ref|YP_004796597.1| - 0.081 13.0 0.0 0.5 10.5 0.0 1.9 2 0 0 2 2 2 0 Cupredoxin-like domain ATP-grasp PF02222.22 gi|344212278|ref|YP_004796598.1| - 3.6e-56 189.4 0.0 5e-56 188.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|344212278|ref|YP_004796598.1| - 1.7e-16 59.6 0.0 3.1e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|344212278|ref|YP_004796598.1| - 4e-08 33.0 0.0 2e-07 30.7 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 gi|344212278|ref|YP_004796598.1| - 0.00025 20.4 0.0 0.00042 19.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-grasp_3 PF02655.14 gi|344212278|ref|YP_004796598.1| - 0.00032 20.8 0.0 0.00048 20.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|344212278|ref|YP_004796598.1| - 0.0012 18.4 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|344212278|ref|YP_004796598.1| - 0.0089 15.5 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|344212278|ref|YP_004796598.1| - 0.18 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain 3HCDH_N PF02737.18 gi|344212278|ref|YP_004796598.1| - 0.2 11.5 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PMT_2 PF13231.6 gi|344212279|ref|YP_004796599.1| - 9.6e-10 38.9 9.0 9.6e-10 38.9 9.0 2.7 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|344212279|ref|YP_004796599.1| - 6.8e-05 22.6 8.0 6.8e-05 22.6 8.0 1.7 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase COX7C PF02935.16 gi|344212279|ref|YP_004796599.1| - 1.2 9.4 4.7 11 6.3 0.1 3.0 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIc DMRL_synthase PF00885.19 gi|344212280|ref|YP_004796600.1| - 3.9e-31 107.8 0.3 4.3e-31 107.6 0.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.21 gi|344212281|ref|YP_004796601.1| - 4.6e-67 226.7 0.0 5.2e-67 226.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|344212281|ref|YP_004796601.1| - 0.0005 19.4 0.0 0.00092 18.6 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|344212281|ref|YP_004796601.1| - 0.0029 16.2 0.0 0.005 15.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Rsbr_N PF08678.10 gi|344212281|ref|YP_004796601.1| - 0.036 14.1 0.0 0.082 13.0 0.0 1.6 1 1 0 1 1 1 0 Rsbr N terminal DUF3483 PF11982.8 gi|344212282|ref|YP_004796602.1| - 0.057 13.0 3.1 0.048 13.3 1.7 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3483) DUF3040 PF11239.8 gi|344212282|ref|YP_004796602.1| - 0.74 10.1 14.0 1.3 9.4 1.6 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3040) CTP_transf_like PF01467.26 gi|344212283|ref|YP_004796603.1| - 4.5e-17 62.6 0.0 4.8e-17 62.5 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|344212283|ref|YP_004796603.1| - 0.068 13.1 1.3 0.1 12.5 0.5 1.8 2 1 0 2 2 2 0 FAD synthetase Prok-JAB PF14464.6 gi|344212284|ref|YP_004796604.1| - 1e-08 34.9 0.0 1.5e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|344212284|ref|YP_004796604.1| - 0.048 13.6 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain tRNA_anti-codon PF01336.25 gi|344212285|ref|YP_004796605.1| - 1.8e-12 47.1 0.3 3.9e-12 46.0 0.3 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|344212285|ref|YP_004796605.1| - 0.0038 17.4 0.2 0.0095 16.2 0.2 1.6 1 0 0 1 1 1 1 DHH family S1 PF00575.23 gi|344212285|ref|YP_004796605.1| - 0.015 15.7 1.4 0.027 14.8 0.1 2.1 2 0 0 2 2 2 0 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|344212285|ref|YP_004796605.1| - 0.079 13.2 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain PLDc_2 PF13091.6 gi|344212286|ref|YP_004796606.1| - 2e-39 134.6 0.0 5.7e-22 78.0 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|344212286|ref|YP_004796606.1| - 3.6e-05 23.8 0.2 0.0034 17.5 0.0 2.5 2 0 0 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|344212286|ref|YP_004796606.1| - 0.055 12.6 0.0 5 6.2 0.0 2.4 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB PP_kinase_C_1 PF17941.1 gi|344212286|ref|YP_004796606.1| - 0.061 12.9 0.0 9.4 5.8 0.0 2.4 2 1 0 2 2 2 0 Polyphosphate kinase C-terminal domain 1 HEAT_2 PF13646.6 gi|344212287|ref|YP_004796607.1| - 1.8e-17 63.5 10.5 1.5e-09 38.1 3.2 3.1 2 1 1 3 3 3 2 HEAT repeats HEAT_PBS PF03130.16 gi|344212287|ref|YP_004796607.1| - 1.2e-10 41.1 10.8 0.026 15.2 1.3 5.8 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|344212287|ref|YP_004796607.1| - 8.4e-07 28.7 0.1 0.06 13.6 0.0 3.6 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.23 gi|344212287|ref|YP_004796607.1| - 4.3e-05 23.4 0.1 0.076 13.1 0.0 3.3 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|344212287|ref|YP_004796607.1| - 6.2e-05 23.4 1.5 0.00065 20.2 0.1 2.9 2 1 0 2 2 2 1 HEAT-like repeat DUF883 PF05957.13 gi|344212287|ref|YP_004796607.1| - 0.007 16.9 0.5 0.007 16.9 0.5 3.3 2 1 2 4 4 4 1 Bacterial protein of unknown function (DUF883) Xan_ur_permease PF00860.20 gi|344212288|ref|YP_004796608.1| - 5.9e-82 275.4 33.1 5.9e-82 275.4 33.1 1.7 2 0 0 2 2 2 1 Permease family AIRC PF00731.20 gi|344212290|ref|YP_004796610.1| - 2.5e-48 163.4 0.0 3.4e-48 163.0 0.0 1.2 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.19 gi|344212291|ref|YP_004796611.1| - 5.8e-31 106.6 0.3 7.2e-31 106.3 0.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.22 gi|344212292|ref|YP_004796612.1| - 7.2e-22 77.6 0.2 1e-21 77.1 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|344212293|ref|YP_004796613.1| - 9.5e-84 280.7 0.0 1.9e-82 276.4 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|344212293|ref|YP_004796613.1| - 4.6e-35 120.9 0.1 9e-35 120.0 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|344212294|ref|YP_004796614.1| - 3e-97 325.6 12.6 3.7e-97 325.3 12.6 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|344212295|ref|YP_004796615.1| - 4.6e-13 48.4 8.7 8.5e-07 28.5 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|344212295|ref|YP_004796615.1| - 2.8e-12 47.0 10.7 4.5e-12 46.4 10.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344212295|ref|YP_004796615.1| - 1.6e-11 45.0 4.4 2.4e-06 28.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|344212295|ref|YP_004796615.1| - 2.4e-09 37.2 23.2 1.5e-07 31.5 12.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344212295|ref|YP_004796615.1| - 6.5e-09 35.8 8.1 9.7e-09 35.2 8.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344212295|ref|YP_004796615.1| - 4.8e-08 33.0 19.3 3.1e-06 27.2 11.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|344212295|ref|YP_004796615.1| - 2.3e-06 27.4 12.6 0.0036 17.3 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|344212295|ref|YP_004796615.1| - 8e-06 26.2 9.7 0.0022 18.4 12.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344212295|ref|YP_004796615.1| - 1.6e-05 25.4 13.2 0.0043 17.5 2.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344212295|ref|YP_004796615.1| - 3.6e-05 23.6 11.8 0.0044 17.0 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|344212295|ref|YP_004796615.1| - 0.00018 22.2 14.1 0.0041 18.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344212295|ref|YP_004796615.1| - 0.0002 21.6 14.1 0.0038 17.6 4.1 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|344212295|ref|YP_004796615.1| - 0.001 19.3 9.2 0.051 13.8 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|344212295|ref|YP_004796615.1| - 0.0027 18.5 5.7 0.52 11.2 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|344212295|ref|YP_004796615.1| - 0.049 13.8 8.3 0.16 12.1 8.3 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S TNFR_c6 PF00020.18 gi|344212295|ref|YP_004796615.1| - 0.25 11.8 8.0 2.8 8.4 1.4 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_13 PF13370.6 gi|344212295|ref|YP_004796615.1| - 1.5 9.4 16.8 1.4 9.6 2.9 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q3 PF00499.20 gi|344212296|ref|YP_004796616.1| - 1.9e-17 63.3 7.8 1.9e-17 63.3 7.8 1.4 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|344212296|ref|YP_004796616.1| - 0.16 12.2 15.5 0.29 11.3 15.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|344212297|ref|YP_004796617.1| - 0.00014 21.6 2.0 0.00017 21.3 2.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 G3P_acyltransf PF02660.15 gi|344212297|ref|YP_004796617.1| - 0.87 9.6 6.4 1.1 9.3 6.4 1.1 1 0 0 1 1 1 0 Glycerol-3-phosphate acyltransferase Oxidored_q2 PF00420.24 gi|344212298|ref|YP_004796618.1| - 1.8e-22 79.0 8.6 1.9e-22 78.9 8.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2545 PF10810.8 gi|344212298|ref|YP_004796618.1| - 0.29 11.3 6.0 0.72 10.0 6.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2545) Proton_antipo_M PF00361.20 gi|344212299|ref|YP_004796619.1| - 2.3e-77 260.1 18.7 1.7e-76 257.3 18.7 2.3 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|344212299|ref|YP_004796619.1| - 3.3e-20 71.9 1.1 7.8e-19 67.5 0.0 3.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|344212299|ref|YP_004796619.1| - 0.004 16.8 0.0 0.019 14.6 0.0 2.0 1 1 0 1 1 1 1 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|344212300|ref|YP_004796620.1| - 3.4e-74 249.7 29.7 3.4e-74 249.7 29.7 2.0 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|344212300|ref|YP_004796620.1| - 0.00012 22.1 0.2 0.00012 22.1 0.2 3.5 4 0 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|344212301|ref|YP_004796621.1| - 1.1e-64 218.4 23.1 1.1e-64 218.4 23.1 2.1 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|344212301|ref|YP_004796621.1| - 0.00036 20.5 1.5 0.00036 20.5 1.5 2.4 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF4212 PF13937.6 gi|344212301|ref|YP_004796621.1| - 0.74 10.2 13.7 1.3 9.5 0.2 4.4 4 0 0 4 4 4 0 Domain of unknown function (DUF4212) Lactamase_B PF00753.27 gi|344212302|ref|YP_004796622.1| - 1.9e-12 47.6 0.2 5e-12 46.2 0.2 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|344212302|ref|YP_004796622.1| - 2.9e-06 27.0 0.2 5.6e-06 26.0 0.2 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TAD2 PF18521.1 gi|344212302|ref|YP_004796622.1| - 0.099 12.6 0.0 0.42 10.7 0.0 2.1 1 0 0 1 1 1 0 Transactivation domain 2 DUF883 PF05957.13 gi|344212303|ref|YP_004796623.1| - 0.17 12.5 2.4 0.89 10.2 0.5 2.0 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) ATP-synt_B PF00430.18 gi|344212303|ref|YP_004796623.1| - 1.1 9.3 5.5 0.92 9.6 3.3 1.7 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Pirin PF02678.16 gi|344212304|ref|YP_004796624.1| - 9.3e-22 77.1 0.0 1.7e-21 76.2 0.0 1.5 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|344212304|ref|YP_004796624.1| - 2.2e-10 40.8 0.0 2.3e-09 37.5 0.0 2.2 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Pirin_C_2 PF17954.1 gi|344212304|ref|YP_004796624.1| - 0.032 14.4 0.0 0.098 12.9 0.0 1.7 2 0 0 2 2 2 0 Quercetinase C-terminal cupin domain Pyr_redox_2 PF07992.14 gi|344212305|ref|YP_004796625.1| - 7.5e-18 64.8 6.8 1.5e-10 40.8 0.3 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344212305|ref|YP_004796625.1| - 3.5e-10 39.6 1.7 1.4e-05 24.5 0.0 2.9 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|344212305|ref|YP_004796625.1| - 6.2e-10 38.3 0.1 0.00012 21.0 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|344212305|ref|YP_004796625.1| - 6.6e-08 32.5 3.4 0.0036 16.9 0.0 2.7 1 1 2 3 3 3 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|344212305|ref|YP_004796625.1| - 1.7e-07 31.4 0.4 0.00035 20.6 0.1 2.6 3 0 0 3 3 3 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|344212305|ref|YP_004796625.1| - 2.5e-06 26.9 0.2 0.00042 19.5 0.0 2.2 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|344212305|ref|YP_004796625.1| - 7.5e-06 25.3 1.0 0.00039 19.6 0.2 2.1 1 1 1 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|344212305|ref|YP_004796625.1| - 2.2e-05 23.9 5.7 0.033 13.4 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain Thi4 PF01946.17 gi|344212305|ref|YP_004796625.1| - 2.7e-05 23.5 0.3 7.2e-05 22.1 0.0 1.8 2 1 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|344212305|ref|YP_004796625.1| - 0.0002 20.6 0.1 0.0057 15.8 0.0 2.1 1 1 1 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|344212305|ref|YP_004796625.1| - 0.00036 20.0 0.1 0.00036 20.0 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|344212305|ref|YP_004796625.1| - 0.00075 19.7 0.0 0.0015 18.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|344212305|ref|YP_004796625.1| - 0.0016 17.8 0.0 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|344212305|ref|YP_004796625.1| - 0.0075 15.2 1.9 1.2 7.9 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|344212305|ref|YP_004796625.1| - 0.035 14.7 0.0 1.5 9.4 0.0 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|344212305|ref|YP_004796625.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|344212305|ref|YP_004796625.1| - 0.12 12.9 0.0 0.24 11.9 0.0 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain DoxX PF07681.12 gi|344212306|ref|YP_004796626.1| - 9.7e-11 42.1 10.2 9.7e-11 42.1 10.2 1.6 2 0 0 2 2 2 1 DoxX SURF4 PF02077.15 gi|344212306|ref|YP_004796626.1| - 0.00024 20.8 0.4 0.00074 19.2 0.4 1.8 1 1 0 1 1 1 1 SURF4 family HR_lesion PF05514.11 gi|344212306|ref|YP_004796626.1| - 0.00026 21.2 0.2 0.021 15.0 0.1 2.1 1 1 1 2 2 2 2 HR-like lesion-inducing Histone_H2A_C PF16211.5 gi|344212306|ref|YP_004796626.1| - 0.013 15.3 0.0 0.013 15.3 0.0 2.1 3 0 0 3 3 3 0 C-terminus of histone H2A DoxX_2 PF13564.6 gi|344212306|ref|YP_004796626.1| - 0.048 13.8 14.4 0.062 13.4 13.1 1.8 1 1 1 2 2 2 0 DoxX-like family DUF2613 PF11021.8 gi|344212306|ref|YP_004796626.1| - 0.058 13.5 0.1 0.058 13.5 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2613) TetR_N PF00440.23 gi|344212307|ref|YP_004796627.1| - 7.7e-10 38.4 0.0 1.4e-09 37.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|344212307|ref|YP_004796627.1| - 3.3e-09 37.0 0.2 5.8e-09 36.2 0.2 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 gi|344212307|ref|YP_004796627.1| - 2.4e-07 30.8 0.5 5.4e-07 29.6 0.2 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|344212307|ref|YP_004796627.1| - 2.3e-05 24.7 0.4 4.8e-05 23.6 0.4 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|344212307|ref|YP_004796627.1| - 3.3e-05 23.9 0.1 6.8e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|344212307|ref|YP_004796627.1| - 3.6e-05 24.0 0.1 9.7e-05 22.6 0.1 1.7 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|344212307|ref|YP_004796627.1| - 0.037 14.1 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_29 PF17938.1 gi|344212307|ref|YP_004796627.1| - 0.038 14.1 0.0 0.074 13.1 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|344212307|ref|YP_004796627.1| - 0.046 14.3 0.0 0.081 13.5 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain AAA_assoc_C PF09821.9 gi|344212310|ref|YP_004796630.1| - 0.086 13.4 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 C-terminal AAA-associated domain SQS_PSY PF00494.19 gi|344212312|ref|YP_004796632.1| - 9.3e-51 172.8 0.2 1.1e-50 172.6 0.2 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Glyco_hydro_68 PF02435.16 gi|344212314|ref|YP_004796634.1| - 9.7e-75 252.0 0.0 2.8e-73 247.2 0.0 2.2 1 1 0 1 1 1 1 Levansucrase/Invertase Glyco_hydro_43 PF04616.14 gi|344212314|ref|YP_004796634.1| - 1.7e-08 34.1 0.0 5.4e-08 32.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hydro_32N PF00251.20 gi|344212315|ref|YP_004796635.1| - 4.9e-79 266.1 0.0 6.2e-79 265.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|344212315|ref|YP_004796635.1| - 1.1e-31 109.9 0.0 1.5e-31 109.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF4960 PF16324.5 gi|344212315|ref|YP_004796635.1| - 6.2e-07 29.2 0.0 4.6e-06 26.4 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4960) Glyco_hydro_43 PF04616.14 gi|344212315|ref|YP_004796635.1| - 0.039 13.3 0.2 1.7 7.9 0.0 2.5 2 1 0 2 2 2 0 Glycosyl hydrolases family 43 T2SSK PF03934.13 gi|344212315|ref|YP_004796635.1| - 0.079 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K DUF4975 PF16346.5 gi|344212315|ref|YP_004796635.1| - 0.085 12.9 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4975) DUF2647 PF10839.8 gi|344212315|ref|YP_004796635.1| - 0.13 12.4 0.0 0.27 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) Yop-YscD_ppl PF16693.5 gi|344212317|ref|YP_004796637.1| - 0.0043 16.5 0.0 0.0076 15.7 0.0 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, periplasmic domain DUF2564 PF10819.8 gi|344212317|ref|YP_004796637.1| - 0.022 15.2 3.2 10 6.6 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2564) Sugarporin_N PF11471.8 gi|344212317|ref|YP_004796637.1| - 0.11 12.5 0.6 0.46 10.5 0.6 2.0 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension TPR_2 PF07719.17 gi|344212317|ref|YP_004796637.1| - 0.11 12.6 14.3 2.4 8.5 0.4 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat USP8_dimer PF08969.11 gi|344212317|ref|YP_004796637.1| - 0.14 12.4 0.1 2 8.6 0.0 2.4 2 0 0 2 2 2 0 USP8 dimerisation domain TPR_MLP1_2 PF07926.12 gi|344212317|ref|YP_004796637.1| - 0.14 12.2 1.0 6.3 6.9 0.0 2.6 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein TPR_14 PF13428.6 gi|344212317|ref|YP_004796637.1| - 5 8.2 20.4 9.2 7.4 0.9 5.2 3 1 2 5 5 5 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|344212317|ref|YP_004796637.1| - 6.3 6.8 11.9 16 5.5 0.2 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat MreB_Mbl PF06723.13 gi|344212319|ref|YP_004796639.1| - 2.7e-06 26.4 0.1 5.8e-06 25.4 0.1 1.6 1 1 0 1 1 1 1 MreB/Mbl protein DNA_gyraseB PF00204.25 gi|344212319|ref|YP_004796639.1| - 0.0064 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B Arch_fla_DE PF04659.13 gi|344212320|ref|YP_004796640.1| - 4e-30 103.5 0.3 5.6e-30 103.1 0.3 1.2 1 0 0 1 1 1 1 Archaeal flagella protein AAA_31 PF13614.6 gi|344212321|ref|YP_004796641.1| - 1.1e-37 129.6 0.0 8.7e-37 126.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344212321|ref|YP_004796641.1| - 3.1e-18 66.0 0.0 4.1e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|344212321|ref|YP_004796641.1| - 1.2e-10 41.2 0.5 2.8e-06 26.8 0.1 2.4 2 1 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|344212321|ref|YP_004796641.1| - 2.3e-09 37.1 0.7 6.1e-06 25.9 0.1 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|344212321|ref|YP_004796641.1| - 8.5e-08 32.0 0.2 0.0066 16.0 0.1 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|344212321|ref|YP_004796641.1| - 3.5e-07 29.9 0.0 0.0013 18.3 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|344212321|ref|YP_004796641.1| - 1.7e-06 27.5 0.5 0.00051 19.3 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase ATP_bind_1 PF03029.17 gi|344212321|ref|YP_004796641.1| - 0.0024 17.7 0.5 0.85 9.3 0.0 2.4 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|344212321|ref|YP_004796641.1| - 0.032 13.9 0.0 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|344212321|ref|YP_004796641.1| - 0.058 13.2 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|344212321|ref|YP_004796641.1| - 0.065 12.8 0.9 0.13 11.8 0.0 1.9 3 0 0 3 3 3 0 AAA domain LpxK PF02606.14 gi|344212321|ref|YP_004796641.1| - 0.11 11.5 0.1 0.19 10.8 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase VirC1 PF07015.11 gi|344212321|ref|YP_004796641.1| - 0.11 11.7 3.7 2.4 7.4 3.9 2.5 1 1 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|344212321|ref|YP_004796641.1| - 0.16 11.7 0.2 0.4 10.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF4535 PF15054.6 gi|344212321|ref|YP_004796641.1| - 0.22 11.3 0.0 0.4 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) CheW PF01584.19 gi|344212322|ref|YP_004796642.1| - 1.9e-21 76.1 0.5 2.9e-21 75.6 0.5 1.3 1 0 0 1 1 1 1 CheW-like domain Pyr_redox_2 PF07992.14 gi|344212323|ref|YP_004796643.1| - 3.1e-29 102.1 2.3 3.1e-29 102.1 2.3 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344212323|ref|YP_004796643.1| - 3.9e-12 46.6 5.7 1.6e-08 35.0 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|344212323|ref|YP_004796643.1| - 1.5e-05 24.8 3.1 0.24 10.9 0.0 3.5 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|344212323|ref|YP_004796643.1| - 9.8e-05 22.4 2.0 0.97 9.4 0.0 3.6 2 2 2 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|344212323|ref|YP_004796643.1| - 0.0016 18.6 5.1 0.27 11.5 0.0 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|344212323|ref|YP_004796643.1| - 0.0029 17.9 0.3 0.3 11.3 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain K_oxygenase PF13434.6 gi|344212323|ref|YP_004796643.1| - 0.0071 15.5 0.0 0.069 12.3 0.0 2.0 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|344212323|ref|YP_004796643.1| - 0.0072 15.6 0.2 3.1 7.0 0.0 2.4 2 0 0 2 2 2 2 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|344212323|ref|YP_004796643.1| - 0.023 14.3 0.2 0.35 10.4 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|344212323|ref|YP_004796643.1| - 0.1 11.6 6.5 0.46 9.5 0.0 3.1 3 1 1 4 4 4 0 Lycopene cyclase protein MDD_C PF18376.1 gi|344212324|ref|YP_004796644.1| - 1.9e-05 24.5 0.0 2.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|344212324|ref|YP_004796644.1| - 8.8e-05 22.7 4.0 0.00096 19.3 4.2 2.3 1 1 1 2 2 2 1 GHMP kinases N terminal domain Methyltransf_24 PF13578.6 gi|344212324|ref|YP_004796644.1| - 0.42 11.7 2.5 33 5.6 0.0 2.8 2 1 0 2 2 2 0 Methyltransferase domain Cob_adeno_trans PF01923.18 gi|344212325|ref|YP_004796645.1| - 9.9e-56 188.4 0.0 1.1e-55 188.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PMSR PF01625.21 gi|344212326|ref|YP_004796646.1| - 1.5e-38 132.4 0.0 2.1e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase zf-H2C2_2 PF13465.6 gi|344212327|ref|YP_004796647.1| - 0.00073 19.9 4.8 0.0044 17.4 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain DNA_ligase_ZBD PF03119.16 gi|344212327|ref|YP_004796647.1| - 0.0093 16.0 3.5 0.069 13.2 0.1 2.2 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-LITAF-like PF10601.9 gi|344212327|ref|YP_004796647.1| - 0.012 15.8 0.8 0.5 10.7 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|344212327|ref|YP_004796647.1| - 0.019 15.2 4.2 0.07 13.4 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon Rubredoxin_2 PF18073.1 gi|344212327|ref|YP_004796647.1| - 0.038 13.7 3.2 0.6 9.9 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 gi|344212327|ref|YP_004796647.1| - 0.2 11.6 4.0 1 9.3 0.1 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|344212327|ref|YP_004796647.1| - 0.2 11.6 2.6 3.6 7.6 0.2 2.0 1 1 0 1 1 1 0 zinc-ribbons zf_C2H2_10 PF18414.1 gi|344212327|ref|YP_004796647.1| - 0.28 10.8 3.8 8.4 6.0 0.8 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger UPF0547 PF10571.9 gi|344212327|ref|YP_004796647.1| - 0.29 11.3 6.5 3.6 7.7 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.20 gi|344212327|ref|YP_004796647.1| - 1.2 9.2 7.8 1.1 9.4 1.6 2.2 1 1 1 2 2 2 0 Rubredoxin Response_reg PF00072.24 gi|344212329|ref|YP_004796649.1| - 7.2e-19 68.0 0.2 8.5e-19 67.8 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|344212330|ref|YP_004796650.1| - 4.9e-30 103.9 0.0 2.7e-10 40.4 0.1 3.7 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|344212330|ref|YP_004796650.1| - 7.3e-24 84.0 0.2 3.1e-09 36.8 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.10 gi|344212330|ref|YP_004796650.1| - 5.2e-23 81.4 9.4 7.7e-07 29.3 0.1 4.4 4 0 0 4 4 4 3 PAS fold PAS_8 PF13188.7 gi|344212330|ref|YP_004796650.1| - 5.1e-20 71.1 1.7 7.3e-07 29.1 0.1 3.9 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|344212330|ref|YP_004796650.1| - 8.5e-20 71.5 0.4 4e-10 40.1 0.2 2.9 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|344212330|ref|YP_004796650.1| - 2.9e-17 63.2 0.0 6.2e-17 62.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|344212330|ref|YP_004796650.1| - 7.3e-13 49.0 0.0 3.1e-05 24.3 0.0 2.7 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|344212330|ref|YP_004796650.1| - 7.6e-10 39.5 0.1 1.6e-05 25.6 0.0 3.2 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.12 gi|344212330|ref|YP_004796650.1| - 7e-09 35.9 0.0 0.0017 18.6 0.0 3.3 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|344212330|ref|YP_004796650.1| - 1.5e-07 31.6 0.0 4.1e-07 30.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|344212330|ref|YP_004796650.1| - 2.8e-06 27.3 3.8 2.8e-06 27.3 3.8 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|344212330|ref|YP_004796650.1| - 1.2e-05 25.3 0.1 3.3e-05 23.9 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|344212330|ref|YP_004796650.1| - 0.0075 16.2 0.0 0.019 14.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|344212330|ref|YP_004796650.1| - 0.011 15.6 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|344212330|ref|YP_004796650.1| - 0.054 13.1 0.1 0.099 12.2 0.1 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|344212330|ref|YP_004796650.1| - 0.085 13.0 1.6 12 6.1 0.0 4.2 4 1 0 4 4 3 0 PAS fold DUF3369 PF11849.8 gi|344212330|ref|YP_004796650.1| - 0.11 12.7 0.0 0.33 11.2 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3369) Aminotran_5 PF00266.19 gi|344212331|ref|YP_004796651.1| - 1.6e-08 33.9 0.0 2.3e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|344212331|ref|YP_004796651.1| - 1.9e-05 23.7 0.0 0.0017 17.3 0.1 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|344212331|ref|YP_004796651.1| - 0.0038 16.5 0.1 0.0062 15.9 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Peptidase_S8 PF00082.22 gi|344212331|ref|YP_004796651.1| - 0.055 12.7 0.0 0.074 12.3 0.0 1.2 1 0 0 1 1 1 0 Subtilase family DegT_DnrJ_EryC1 PF01041.17 gi|344212331|ref|YP_004796651.1| - 0.17 11.2 0.1 0.29 10.4 0.1 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family GDC-P PF02347.16 gi|344212332|ref|YP_004796652.1| - 3.6e-102 342.4 0.0 4.2e-102 342.2 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|344212332|ref|YP_004796652.1| - 1.1e-05 24.2 0.0 1.6e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GCV_H PF01597.19 gi|344212333|ref|YP_004796653.1| - 1.8e-42 144.1 0.0 1.9e-42 144.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|344212333|ref|YP_004796653.1| - 0.0084 16.0 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.22 gi|344212333|ref|YP_004796653.1| - 0.016 15.0 0.2 0.032 14.1 0.1 1.5 2 0 0 2 2 2 0 Biotin-requiring enzyme PTS_EIIA_1 PF00358.20 gi|344212333|ref|YP_004796653.1| - 0.13 12.0 0.3 0.42 10.4 0.3 1.8 1 1 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GCV_T PF01571.21 gi|344212334|ref|YP_004796654.1| - 3.7e-81 272.3 0.0 4.5e-81 272.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|344212334|ref|YP_004796654.1| - 1.6e-21 76.0 0.0 3.5e-21 74.9 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|344212334|ref|YP_004796654.1| - 0.0003 20.9 0.0 0.0085 16.3 0.0 2.1 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.9 gi|344212334|ref|YP_004796654.1| - 0.11 12.8 0.0 0.35 11.2 0.0 1.8 2 0 0 2 2 2 0 GTP-binding protein TrmE N-terminus PAS_4 PF08448.10 gi|344212335|ref|YP_004796655.1| - 9.5e-26 90.2 7.8 6.3e-12 45.7 0.0 3.6 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|344212335|ref|YP_004796655.1| - 4.8e-20 71.7 0.0 6e-10 39.1 0.0 4.0 4 1 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|344212335|ref|YP_004796655.1| - 4.9e-18 65.2 0.0 4.6e-07 30.0 0.0 3.3 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|344212335|ref|YP_004796655.1| - 2.8e-16 59.6 0.0 3.4e-09 36.9 0.0 3.5 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|344212335|ref|YP_004796655.1| - 1.1e-09 38.7 0.0 2.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|344212335|ref|YP_004796655.1| - 1.8e-07 31.0 0.0 7.5e-07 29.0 0.0 2.1 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|344212335|ref|YP_004796655.1| - 0.00083 19.3 0.3 0.0039 17.2 0.3 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|344212335|ref|YP_004796655.1| - 0.076 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase SPOB_a PF14689.6 gi|344212335|ref|YP_004796655.1| - 0.08 12.7 0.2 0.21 11.3 0.2 1.7 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain NYN PF01936.18 gi|344212336|ref|YP_004796656.1| - 5.2e-19 69.2 0.1 5.9e-19 69.0 0.1 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.6 gi|344212336|ref|YP_004796656.1| - 0.0011 18.6 0.6 0.0014 18.3 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain CoA_binding_2 PF13380.6 gi|344212336|ref|YP_004796656.1| - 0.01 16.4 0.4 0.022 15.3 0.3 1.6 1 1 1 2 2 2 1 CoA binding domain Peripla_BP_1 PF00532.21 gi|344212336|ref|YP_004796656.1| - 0.1 12.0 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family TatD_DNase PF01026.21 gi|344212337|ref|YP_004796657.1| - 2e-15 56.8 0.1 1.1e-11 44.7 0.0 2.1 1 1 1 2 2 2 2 TatD related DNase ABC_tran PF00005.27 gi|344212338|ref|YP_004796658.1| - 1.2e-29 103.6 0.0 2e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212338|ref|YP_004796658.1| - 1.2e-11 45.0 0.0 8.6e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344212338|ref|YP_004796658.1| - 1e-08 34.9 0.5 1.3e-07 31.3 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344212338|ref|YP_004796658.1| - 5.5e-05 23.0 0.0 0.0083 15.9 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|344212338|ref|YP_004796658.1| - 0.00027 21.5 0.4 0.0013 19.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|344212338|ref|YP_004796658.1| - 0.0014 18.5 0.0 0.0033 17.3 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|344212338|ref|YP_004796658.1| - 0.0018 18.6 0.0 0.0056 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|344212338|ref|YP_004796658.1| - 0.0042 16.8 0.0 0.0097 15.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|344212338|ref|YP_004796658.1| - 0.0064 16.6 0.0 0.0095 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|344212338|ref|YP_004796658.1| - 0.0092 15.6 0.5 0.1 12.1 0.5 2.3 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|344212338|ref|YP_004796658.1| - 0.013 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|344212338|ref|YP_004796658.1| - 0.021 15.2 0.1 0.069 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|344212338|ref|YP_004796658.1| - 0.022 14.5 0.5 0.49 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain DeoRC PF00455.22 gi|344212338|ref|YP_004796658.1| - 0.026 14.5 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain ABC_ATPase PF09818.9 gi|344212338|ref|YP_004796658.1| - 0.031 13.1 0.2 4.5 6.0 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class KdpD PF02702.17 gi|344212338|ref|YP_004796658.1| - 0.058 12.8 0.2 0.1 12.0 0.2 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain PRK PF00485.18 gi|344212338|ref|YP_004796658.1| - 0.062 13.0 0.0 0.23 11.2 0.0 1.9 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 gi|344212338|ref|YP_004796658.1| - 0.07 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|344212338|ref|YP_004796658.1| - 0.15 11.8 0.1 0.88 9.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|344212339|ref|YP_004796659.1| - 2.6e-21 76.2 13.2 2.6e-21 76.2 13.2 5.1 1 1 3 4 4 4 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344212340|ref|YP_004796660.1| - 6e-16 58.7 17.6 6e-16 58.7 17.6 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|344212341|ref|YP_004796661.1| - 6.5e-29 101.5 0.1 1.2e-28 100.6 0.1 1.4 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|344212341|ref|YP_004796661.1| - 4.1e-19 68.4 0.0 5.9e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|344212341|ref|YP_004796661.1| - 0.00022 21.3 0.4 0.22 11.4 0.0 2.3 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344212341|ref|YP_004796661.1| - 0.00073 19.3 1.6 0.0012 18.6 1.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RecT PF03837.14 gi|344212341|ref|YP_004796661.1| - 0.032 13.7 1.4 1.3 8.4 0.3 2.2 2 0 0 2 2 2 0 RecT family PhoU PF01895.19 gi|344212342|ref|YP_004796662.1| - 1e-23 83.6 5.9 4.3e-19 68.8 0.6 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|344212342|ref|YP_004796662.1| - 6e-09 35.6 0.0 1.2e-08 34.6 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF948 PF06103.11 gi|344212342|ref|YP_004796662.1| - 2.3e-05 24.5 3.5 1.1 9.5 0.1 3.5 2 2 1 3 3 3 3 Bacterial protein of unknown function (DUF948) Bep_C_terminal PF17841.1 gi|344212342|ref|YP_004796662.1| - 0.0094 16.1 0.0 0.023 14.9 0.0 1.8 1 1 0 1 1 1 1 BID domain of Bartonella effector protein (Bep) FAM184 PF15665.5 gi|344212342|ref|YP_004796662.1| - 0.094 12.5 0.2 0.17 11.6 0.2 1.4 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B FlgN PF05130.12 gi|344212342|ref|YP_004796662.1| - 0.12 12.9 0.4 0.12 12.9 0.4 1.8 2 1 0 2 2 2 0 FlgN protein T3SSipB PF16535.5 gi|344212342|ref|YP_004796662.1| - 0.38 11.2 4.3 5.8 7.4 2.8 2.9 2 1 0 2 2 2 0 Type III cell invasion protein SipB HisKA_3 PF07730.13 gi|344212342|ref|YP_004796662.1| - 3 8.4 7.7 21 5.7 0.1 3.5 2 2 2 4 4 4 0 Histidine kinase Ribosomal_S8e PF01201.22 gi|344212343|ref|YP_004796663.1| - 1.1e-29 103.4 5.5 1.2e-29 103.2 5.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e PUB PF09409.10 gi|344212343|ref|YP_004796663.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 PUB domain DUF2240 PF09999.9 gi|344212344|ref|YP_004796664.1| - 1.2e-54 183.9 0.7 1.3e-54 183.7 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF373 PF04123.13 gi|344212346|ref|YP_004796666.1| - 0.49 9.8 8.3 4.5 6.6 8.3 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF373) PrgI PF12666.7 gi|344212346|ref|YP_004796666.1| - 5.6 7.7 11.0 1.4 9.7 1.2 2.4 2 0 0 2 2 2 0 PrgI family protein OMPdecase PF00215.24 gi|344212347|ref|YP_004796667.1| - 9.3e-32 110.4 0.0 1.2e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family MutL PF13941.6 gi|344212347|ref|YP_004796667.1| - 0.11 11.0 0.1 0.16 10.5 0.1 1.1 1 0 0 1 1 1 0 MutL protein zf-C2HC5 PF06221.13 gi|344212348|ref|YP_004796668.1| - 0.014 15.3 0.4 0.014 15.3 0.4 1.7 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-HIT PF04438.16 gi|344212348|ref|YP_004796668.1| - 0.019 14.8 5.0 0.026 14.4 1.4 2.1 2 0 0 2 2 2 0 HIT zinc finger DZR PF12773.7 gi|344212348|ref|YP_004796668.1| - 0.02 14.9 6.2 0.083 12.9 6.2 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-B_box PF00643.24 gi|344212348|ref|YP_004796668.1| - 0.15 12.3 5.1 0.26 11.5 1.9 2.0 2 0 0 2 2 2 0 B-box zinc finger zf-HYPF PF07503.12 gi|344212348|ref|YP_004796668.1| - 0.3 10.9 0.0 0.3 10.9 0.0 2.9 2 1 1 3 3 3 0 HypF finger Prok-RING_2 PF14445.6 gi|344212348|ref|YP_004796668.1| - 0.5 10.6 8.1 0.9 9.7 8.1 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 zf-LITAF-like PF10601.9 gi|344212348|ref|YP_004796668.1| - 0.51 10.6 5.9 1.4 9.2 3.5 2.2 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|344212348|ref|YP_004796668.1| - 0.69 9.7 5.5 4.1 7.2 0.1 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.16 gi|344212348|ref|YP_004796668.1| - 1.4 9.1 8.6 6.8 6.9 9.0 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger Fzo_mitofusin PF04799.13 gi|344212349|ref|YP_004796669.1| - 0.74 9.4 4.9 0.77 9.3 4.9 1.1 1 0 0 1 1 1 0 fzo-like conserved region GATase PF00117.28 gi|344212350|ref|YP_004796670.1| - 5.8e-43 146.9 0.0 6.6e-43 146.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344212350|ref|YP_004796670.1| - 3.2e-08 33.6 0.2 1.5e-07 31.4 0.2 1.8 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|344212351|ref|YP_004796671.1| - 1.9e-92 309.5 0.0 5.1e-92 308.1 0.0 1.6 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|344212351|ref|YP_004796671.1| - 3.2e-18 66.3 0.0 1.9e-16 60.5 0.0 3.1 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|344212352|ref|YP_004796672.1| - 2e-34 119.1 0.4 2.3e-34 118.9 0.4 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.17 gi|344212352|ref|YP_004796672.1| - 0.0012 18.2 1.0 0.0084 15.5 0.0 2.4 2 1 1 3 3 3 1 Thiamine monophosphate synthase NMO PF03060.15 gi|344212352|ref|YP_004796672.1| - 0.015 14.7 5.7 0.018 14.5 0.9 2.1 1 1 0 2 2 2 0 Nitronate monooxygenase His_biosynth PF00977.21 gi|344212352|ref|YP_004796672.1| - 0.016 14.7 1.5 0.022 14.2 0.3 2.0 2 1 0 2 2 2 0 Histidine biosynthesis protein BtpA PF03437.15 gi|344212352|ref|YP_004796672.1| - 0.037 13.4 0.3 0.067 12.6 0.1 1.6 1 1 0 1 1 1 0 BtpA family DUF1386 PF07138.11 gi|344212352|ref|YP_004796672.1| - 0.13 11.5 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) Trimer_CC PF08954.11 gi|344212352|ref|YP_004796672.1| - 0.14 11.7 0.1 0.35 10.5 0.1 1.7 1 0 0 1 1 1 0 Trimerisation motif UPF0180 PF03698.13 gi|344212352|ref|YP_004796672.1| - 0.16 12.1 0.5 0.58 10.4 0.0 2.1 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) Turandot PF07240.11 gi|344212352|ref|YP_004796672.1| - 0.26 11.3 1.3 32 4.6 0.1 3.3 3 1 0 3 3 3 0 Stress-inducible humoral factor Turandot Glycos_transf_3 PF00591.21 gi|344212353|ref|YP_004796673.1| - 2e-100 335.6 2.5 2.6e-100 335.2 2.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|344212353|ref|YP_004796673.1| - 5.1e-18 64.7 3.0 5.1e-18 64.7 3.0 2.1 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|344212353|ref|YP_004796673.1| - 0.012 15.3 0.0 0.04 13.6 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) PadR PF03551.14 gi|344212355|ref|YP_004796675.1| - 0.0018 18.2 0.1 0.007 16.3 0.1 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|344212355|ref|YP_004796675.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CBS PF00571.28 gi|344212358|ref|YP_004796678.1| - 7e-41 138.5 15.6 4.4e-14 52.7 2.9 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|344212358|ref|YP_004796678.1| - 0.0034 18.1 0.0 0.016 16.0 0.0 2.2 1 1 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein POTRA PF07244.15 gi|344212358|ref|YP_004796678.1| - 0.071 13.7 0.0 0.44 11.2 0.0 2.3 2 1 0 2 2 2 0 Surface antigen variable number repeat RNR_N PF08343.10 gi|344212358|ref|YP_004796678.1| - 0.091 12.8 0.1 0.72 9.9 0.1 2.3 2 0 0 2 2 2 0 Ribonucleotide reductase N-terminal DUF3010 PF11215.8 gi|344212358|ref|YP_004796678.1| - 0.14 12.4 0.2 1 9.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3010) ADH_N_2 PF16884.5 gi|344212359|ref|YP_004796679.1| - 2.9e-39 133.3 0.0 6.3e-39 132.2 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|344212359|ref|YP_004796679.1| - 3.7e-19 69.0 0.0 5.2e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|344212359|ref|YP_004796679.1| - 1.6e-10 42.1 0.0 2.9e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AAA PF00004.29 gi|344212360|ref|YP_004796680.1| - 4.8e-100 331.2 0.0 1.8e-49 167.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|344212360|ref|YP_004796680.1| - 2.1e-30 104.7 0.0 1.4e-29 102.1 0.1 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|344212360|ref|YP_004796680.1| - 2.7e-27 94.3 5.1 6.1e-13 48.4 1.2 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|344212360|ref|YP_004796680.1| - 4.2e-17 61.7 0.1 2.4e-16 59.2 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|344212360|ref|YP_004796680.1| - 3.5e-15 56.1 0.0 7.2e-07 29.1 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|344212360|ref|YP_004796680.1| - 1.9e-13 51.1 3.4 8.2e-06 26.3 0.2 4.3 3 2 1 4 4 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|344212360|ref|YP_004796680.1| - 5.2e-13 49.5 0.0 1.5e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|344212360|ref|YP_004796680.1| - 5.7e-13 49.0 2.0 5.8e-05 23.1 0.0 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|344212360|ref|YP_004796680.1| - 1.8e-11 44.5 0.6 0.0094 16.2 0.0 4.3 2 2 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|344212360|ref|YP_004796680.1| - 7.5e-11 42.4 0.0 6.4e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|344212360|ref|YP_004796680.1| - 1.2e-10 41.2 0.0 0.00037 19.8 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|344212360|ref|YP_004796680.1| - 2e-07 30.9 0.0 0.016 14.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|344212360|ref|YP_004796680.1| - 2.8e-07 30.6 0.0 0.0058 16.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|344212360|ref|YP_004796680.1| - 7.4e-07 29.8 0.0 0.075 13.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|344212360|ref|YP_004796680.1| - 1.2e-06 28.1 0.1 0.054 12.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|344212360|ref|YP_004796680.1| - 1.2e-06 28.2 0.4 1.5 8.4 0.0 4.4 4 0 0 4 4 4 1 AAA domain RNA_helicase PF00910.22 gi|344212360|ref|YP_004796680.1| - 1.4e-06 28.7 0.0 0.058 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|344212360|ref|YP_004796680.1| - 2.1e-06 27.5 0.1 0.11 12.1 0.0 3.4 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|344212360|ref|YP_004796680.1| - 3.1e-06 26.8 0.0 0.076 12.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|344212360|ref|YP_004796680.1| - 7.9e-06 25.8 0.0 0.1 12.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|344212360|ref|YP_004796680.1| - 8.1e-06 26.2 0.0 0.037 14.3 0.0 2.9 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|344212360|ref|YP_004796680.1| - 1.4e-05 25.1 0.0 0.91 9.4 0.0 3.9 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|344212360|ref|YP_004796680.1| - 2.2e-05 24.5 0.0 0.17 11.9 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|344212360|ref|YP_004796680.1| - 2.3e-05 24.0 0.5 0.43 10.0 0.0 3.4 3 0 0 3 3 3 2 PhoH-like protein ATPase PF06745.13 gi|344212360|ref|YP_004796680.1| - 3.5e-05 23.3 2.8 0.48 9.7 0.0 3.7 4 0 0 4 4 4 2 KaiC ABC_tran PF00005.27 gi|344212360|ref|YP_004796680.1| - 4.9e-05 23.9 0.0 0.48 10.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.6 gi|344212360|ref|YP_004796680.1| - 5.3e-05 23.0 0.0 0.23 11.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|344212360|ref|YP_004796680.1| - 6.7e-05 22.7 0.1 0.51 10.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|344212360|ref|YP_004796680.1| - 7.1e-05 22.7 0.2 0.3 10.8 0.0 2.7 3 0 0 3 3 3 2 AAA domain DUF815 PF05673.13 gi|344212360|ref|YP_004796680.1| - 8.3e-05 21.9 0.0 0.23 10.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|344212360|ref|YP_004796680.1| - 9.3e-05 21.7 0.0 0.12 11.6 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.17 gi|344212360|ref|YP_004796680.1| - 0.00031 19.9 0.1 0.37 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|344212360|ref|YP_004796680.1| - 0.00034 20.0 0.0 0.34 10.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|344212360|ref|YP_004796680.1| - 0.00044 20.2 0.1 0.56 10.1 0.0 3.1 3 0 0 3 3 2 1 NACHT domain AAA_17 PF13207.6 gi|344212360|ref|YP_004796680.1| - 0.0007 20.0 0.0 1.5 9.2 0.0 3.3 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.12 gi|344212360|ref|YP_004796680.1| - 0.00097 18.5 0.2 1.8 7.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_19 PF13245.6 gi|344212360|ref|YP_004796680.1| - 0.0016 18.8 0.7 2.2 8.6 0.0 2.8 2 1 1 3 3 2 1 AAA domain Vps4_C PF09336.10 gi|344212360|ref|YP_004796680.1| - 0.0016 18.4 1.3 0.19 11.7 0.0 3.0 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain Sigma54_activ_2 PF14532.6 gi|344212360|ref|YP_004796680.1| - 0.0016 18.5 0.0 3 8.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|344212360|ref|YP_004796680.1| - 0.002 17.5 0.8 0.67 9.3 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase NTPase_1 PF03266.15 gi|344212360|ref|YP_004796680.1| - 0.0023 17.8 0.1 2.9 7.8 0.1 3.1 2 1 0 2 2 2 1 NTPase Bac_DnaA PF00308.18 gi|344212360|ref|YP_004796680.1| - 0.0054 16.6 0.0 5.2 6.8 0.0 2.9 3 0 0 3 3 2 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|344212360|ref|YP_004796680.1| - 0.012 15.3 0.1 4.4 7.0 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|344212360|ref|YP_004796680.1| - 0.018 14.8 0.0 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KAP_NTPase PF07693.14 gi|344212360|ref|YP_004796680.1| - 0.018 14.3 0.1 4.7 6.4 0.0 3.0 2 2 0 3 3 3 0 KAP family P-loop domain AFG1_ATPase PF03969.16 gi|344212360|ref|YP_004796680.1| - 0.021 13.7 0.0 1.7 7.4 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase CPT PF07931.12 gi|344212360|ref|YP_004796680.1| - 0.023 14.5 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein ResIII PF04851.15 gi|344212360|ref|YP_004796680.1| - 0.033 14.2 0.0 8.7 6.3 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Rad17 PF03215.15 gi|344212360|ref|YP_004796680.1| - 0.038 13.9 0.0 9.3 6.1 0.0 2.7 2 1 1 3 3 3 0 Rad17 P-loop domain Hydin_ADK PF17213.3 gi|344212360|ref|YP_004796680.1| - 0.045 14.0 0.0 4.3 7.6 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|344212360|ref|YP_004796680.1| - 0.05 13.2 0.0 5.4 6.6 0.0 2.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Torsin PF06309.11 gi|344212360|ref|YP_004796680.1| - 0.073 13.2 0.0 4.6 7.4 0.0 2.3 2 0 0 2 2 2 0 Torsin SKI PF01202.22 gi|344212360|ref|YP_004796680.1| - 0.084 13.0 0.0 11 6.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin2 PF13189.6 gi|344212360|ref|YP_004796680.1| - 0.089 12.9 0.0 7 6.7 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family Usp PF00582.26 gi|344212361|ref|YP_004796681.1| - 5.3e-09 36.7 1.3 7.7e-09 36.2 1.3 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF111 PF01969.17 gi|344212362|ref|YP_004796682.1| - 4.8e-133 443.9 1.4 5.5e-133 443.7 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 SelP_N PF04592.14 gi|344212362|ref|YP_004796682.1| - 0.00057 19.4 7.3 0.001 18.5 7.3 1.3 1 0 0 1 1 1 1 Selenoprotein P, N terminal region Transcrip_reg PF01709.20 gi|344212362|ref|YP_004796682.1| - 0.044 13.2 0.0 0.12 11.8 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator Zip PF02535.22 gi|344212362|ref|YP_004796682.1| - 0.42 9.8 3.3 0.59 9.3 3.3 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter RskA PF10099.9 gi|344212364|ref|YP_004796684.1| - 5.8 7.2 10.3 0.73 10.1 2.9 2.1 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Rad51 PF08423.11 gi|344212365|ref|YP_004796685.1| - 1.3e-23 83.6 0.0 1.7e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|344212365|ref|YP_004796685.1| - 5.9e-13 48.8 1.2 8.9e-13 48.2 1.2 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|344212365|ref|YP_004796685.1| - 4.6e-12 46.0 0.3 8.6e-12 45.1 0.3 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|344212365|ref|YP_004796685.1| - 3.7e-10 39.5 0.0 1.9e-09 37.2 0.0 1.9 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|344212365|ref|YP_004796685.1| - 2.4e-08 33.9 0.0 3.4e-08 33.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|344212365|ref|YP_004796685.1| - 8.7e-06 25.5 0.0 1.1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.15 gi|344212365|ref|YP_004796685.1| - 0.00088 18.7 0.0 0.002 17.5 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|344212365|ref|YP_004796685.1| - 0.0089 15.8 0.1 0.023 14.4 0.1 1.6 1 1 1 2 2 2 1 IstB-like ATP binding protein Isochorismatase PF00857.20 gi|344212365|ref|YP_004796685.1| - 0.049 13.8 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 Isochorismatase family MPTase-PolyVal PF18818.1 gi|344212365|ref|YP_004796685.1| - 0.11 12.5 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Metallopeptidase superfamily domain PhoU PF01895.19 gi|344212366|ref|YP_004796686.1| - 7.4e-36 122.5 17.5 5.1e-22 78.1 1.6 2.1 2 0 0 2 2 2 2 PhoU domain Trigger_N PF05697.13 gi|344212366|ref|YP_004796686.1| - 0.0079 16.5 0.4 0.051 13.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial trigger factor protein (TF) TrkA_N PF02254.18 gi|344212368|ref|YP_004796688.1| - 1.9e-51 173.2 12.3 1.9e-25 89.4 0.5 3.2 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|344212368|ref|YP_004796688.1| - 1.5e-30 104.8 9.2 3.4e-16 58.8 0.4 3.5 3 1 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.6 gi|344212368|ref|YP_004796688.1| - 2.8e-11 43.8 2.3 5.7e-05 23.5 0.1 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|344212368|ref|YP_004796688.1| - 6.8e-11 42.4 0.3 1.2e-05 25.4 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|344212368|ref|YP_004796688.1| - 1.2e-06 28.8 1.9 0.00094 19.4 0.3 2.6 2 1 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain FAD_binding_3 PF01494.19 gi|344212368|ref|YP_004796688.1| - 1.2e-06 28.0 0.3 0.00021 20.6 0.0 2.5 3 0 0 3 3 3 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|344212368|ref|YP_004796688.1| - 6.4e-06 25.6 2.9 0.011 15.0 0.0 2.5 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|344212368|ref|YP_004796688.1| - 3.3e-05 24.4 2.0 0.017 15.7 0.1 3.8 3 2 1 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N PF00107.26 gi|344212368|ref|YP_004796688.1| - 0.00012 22.1 4.0 0.00066 19.7 0.1 3.6 3 1 1 4 4 4 1 Zinc-binding dehydrogenase 3HCDH_N PF02737.18 gi|344212368|ref|YP_004796688.1| - 0.00015 21.7 0.4 0.0081 16.1 0.2 2.5 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HEM4 PF02602.15 gi|344212368|ref|YP_004796688.1| - 0.0002 20.8 0.0 0.00076 18.9 0.0 1.9 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD UDPG_MGDP_dh_N PF03721.14 gi|344212368|ref|YP_004796688.1| - 0.00032 20.3 0.1 0.0026 17.4 0.2 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|344212368|ref|YP_004796688.1| - 0.00053 19.3 0.9 0.34 10.1 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Ldh_1_N PF00056.23 gi|344212368|ref|YP_004796688.1| - 0.00058 20.0 0.8 1 9.5 0.2 2.4 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|344212368|ref|YP_004796688.1| - 0.00062 20.6 0.5 0.075 13.9 0.2 3.0 3 0 0 3 3 2 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox PF00070.27 gi|344212368|ref|YP_004796688.1| - 0.00077 20.0 0.2 1.8 9.2 0.0 3.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|344212368|ref|YP_004796688.1| - 0.00077 18.9 1.8 0.034 13.5 0.3 2.6 3 0 0 3 3 3 1 ThiF family adh_short PF00106.25 gi|344212368|ref|YP_004796688.1| - 0.0013 18.2 0.8 0.17 11.3 0.0 2.5 2 0 0 2 2 2 1 short chain dehydrogenase XdhC_C PF13478.6 gi|344212368|ref|YP_004796688.1| - 0.0021 18.5 2.5 1.2 9.6 0.2 3.1 2 2 1 3 3 3 2 XdhC Rossmann domain DAO PF01266.24 gi|344212368|ref|YP_004796688.1| - 0.0024 17.5 1.0 0.056 13.0 0.2 2.5 2 1 0 2 2 2 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|344212368|ref|YP_004796688.1| - 0.0027 17.1 0.0 0.43 9.9 0.1 2.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Castor_Poll_mid PF06241.12 gi|344212368|ref|YP_004796688.1| - 0.0029 17.5 0.0 0.57 10.2 0.0 2.5 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel NAD_binding_2 PF03446.15 gi|344212368|ref|YP_004796688.1| - 0.0031 17.7 0.1 0.06 13.5 0.0 2.7 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1188 PF06690.11 gi|344212368|ref|YP_004796688.1| - 0.0062 16.1 0.0 0.018 14.6 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) ApbA PF02558.16 gi|344212368|ref|YP_004796688.1| - 0.0068 16.1 0.1 0.052 13.2 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.6 gi|344212368|ref|YP_004796688.1| - 0.013 15.8 0.0 8.4 6.7 0.0 2.7 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain MRP-S31 PF15433.6 gi|344212368|ref|YP_004796688.1| - 0.092 12.4 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 AdoHcyase_NAD PF00670.21 gi|344212368|ref|YP_004796688.1| - 0.25 11.4 4.1 0.45 10.6 1.9 2.4 2 1 1 3 3 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiS PF02597.20 gi|344212368|ref|YP_004796688.1| - 0.61 10.8 3.2 6.9 7.4 0.1 3.4 3 1 0 3 3 3 0 ThiS family UvrB PF12344.8 gi|344212369|ref|YP_004796689.1| - 0.13 12.1 0.4 0.19 11.6 0.4 1.3 1 0 0 1 1 1 0 Ultra-violet resistance protein B HTH_IclR PF09339.10 gi|344212371|ref|YP_004796691.1| - 0.0019 18.0 0.0 0.0044 16.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344212371|ref|YP_004796691.1| - 0.0068 16.0 0.0 0.021 14.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344212371|ref|YP_004796691.1| - 0.018 14.9 0.0 0.055 13.4 0.0 1.8 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|344212371|ref|YP_004796691.1| - 0.12 12.3 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|344212371|ref|YP_004796691.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|344212372|ref|YP_004796692.1| - 2.5e-14 52.8 0.0 4e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344212372|ref|YP_004796692.1| - 3.3e-07 30.3 2.0 5.3e-07 29.6 2.0 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|344212372|ref|YP_004796692.1| - 1.7e-05 24.3 0.0 3.4e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344212372|ref|YP_004796692.1| - 0.00034 20.4 0.0 0.00066 19.5 0.0 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|344212372|ref|YP_004796692.1| - 0.0016 17.9 0.0 0.0034 16.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|344212372|ref|YP_004796692.1| - 0.0037 17.3 0.0 0.0091 16.0 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|344212372|ref|YP_004796692.1| - 0.0059 16.4 0.3 0.022 14.6 0.0 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344212372|ref|YP_004796692.1| - 0.0092 15.6 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.22 gi|344212372|ref|YP_004796692.1| - 0.04 13.8 0.0 0.091 12.7 0.0 1.7 1 0 0 1 1 1 0 MarR family Phage_CI_repr PF07022.13 gi|344212372|ref|YP_004796692.1| - 0.041 14.0 0.0 0.074 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_1 PF00126.27 gi|344212372|ref|YP_004796692.1| - 0.11 12.5 0.1 0.97 9.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4330 PF14221.6 gi|344212373|ref|YP_004796693.1| - 2.1e-29 102.9 9.3 4.3e-11 43.3 0.0 5.2 4 1 0 4 4 4 4 Domain of unknown function (DUF4330) HlyD_3 PF13437.6 gi|344212373|ref|YP_004796693.1| - 0.01 16.5 4.2 0.16 12.7 0.3 3.9 3 1 2 5 5 5 0 HlyD family secretion protein Glyco_tranf_2_3 PF13641.6 gi|344212376|ref|YP_004796696.1| - 0.00014 21.8 0.5 0.00076 19.4 0.5 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|344212376|ref|YP_004796696.1| - 0.00038 20.4 0.2 0.00055 19.9 0.2 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|344212376|ref|YP_004796696.1| - 0.0061 16.4 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_7C PF02709.14 gi|344212376|ref|YP_004796696.1| - 0.14 11.9 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.20 gi|344212378|ref|YP_004796698.1| - 9.2e-39 132.7 0.0 1.3e-38 132.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344212378|ref|YP_004796698.1| - 2.1e-30 105.9 0.1 3.5e-30 105.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|344212378|ref|YP_004796698.1| - 1.5e-12 47.7 0.0 2.8e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212378|ref|YP_004796698.1| - 6.3e-08 32.8 0.3 2.6e-07 30.8 0.1 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344212378|ref|YP_004796698.1| - 0.00092 19.7 0.1 0.006 17.0 0.0 2.2 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Nif11 PF07862.11 gi|344212378|ref|YP_004796698.1| - 0.07 13.4 0.3 2 8.8 0.1 2.5 2 0 0 2 2 2 0 Nif11 domain Sulfatase PF00884.23 gi|344212379|ref|YP_004796699.1| - 5.9e-47 160.6 0.3 8.3e-47 160.1 0.3 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344212379|ref|YP_004796699.1| - 3.7e-17 63.0 0.1 2.4e-08 34.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|344212379|ref|YP_004796699.1| - 0.0036 16.0 0.0 0.0053 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DDE_Tnp_IS1595 PF12762.7 gi|344212380|ref|YP_004796700.1| - 1.4e-19 70.6 0.0 2.5e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain T2SSM_b PF10741.9 gi|344212380|ref|YP_004796700.1| - 0.044 13.6 0.0 0.074 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M subtype b Glycos_transf_1 PF00534.20 gi|344212382|ref|YP_004796702.1| - 2.3e-14 53.3 0.0 5.8e-14 52.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212382|ref|YP_004796702.1| - 4.6e-10 39.7 0.0 3.5e-09 36.9 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|344212382|ref|YP_004796702.1| - 5.7e-08 33.3 0.0 9.9e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|344212383|ref|YP_004796703.1| - 3.3e-39 134.2 0.0 5.8e-39 133.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344212383|ref|YP_004796703.1| - 5.5e-28 98.1 0.0 1.1e-27 97.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212383|ref|YP_004796703.1| - 8.3e-15 55.2 0.6 1.2e-14 54.6 0.6 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|344212383|ref|YP_004796703.1| - 1.3e-09 38.3 0.0 3.3e-09 37.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|344212383|ref|YP_004796703.1| - 2.2e-06 28.2 0.0 3.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|344212383|ref|YP_004796703.1| - 2.2e-05 24.5 0.1 0.08 13.0 0.0 2.6 3 0 0 3 3 3 2 Glycosyl transferase 4-like Glyco_hydro_88 PF07470.13 gi|344212384|ref|YP_004796704.1| - 6.4e-19 68.2 6.4 9.1e-19 67.7 6.4 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 gi|344212384|ref|YP_004796704.1| - 6.7e-06 24.9 0.1 0.09 11.2 0.0 2.8 1 1 2 3 3 3 3 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_76 PF03663.14 gi|344212384|ref|YP_004796704.1| - 4.7e-05 23.1 10.5 0.0013 18.4 1.8 3.0 1 1 1 2 2 2 2 Glycosyl hydrolase family 76 Prenyltrans PF00432.21 gi|344212384|ref|YP_004796704.1| - 0.0011 18.7 0.4 6.2 6.6 0.0 3.6 3 0 0 3 3 3 1 Prenyltransferase and squalene oxidase repeat LANC_like PF05147.13 gi|344212384|ref|YP_004796704.1| - 0.12 10.9 1.6 8 4.9 0.1 3.5 3 1 1 4 4 4 0 Lanthionine synthetase C-like protein Glyco_trans_1_4 PF13692.6 gi|344212386|ref|YP_004796706.1| - 4e-23 82.3 0.0 1e-22 81.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|344212386|ref|YP_004796706.1| - 7.2e-23 81.0 0.0 1.2e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212386|ref|YP_004796706.1| - 2.3e-17 63.5 0.0 3.5e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344212386|ref|YP_004796706.1| - 2.3e-13 50.9 0.0 3.4e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344212386|ref|YP_004796706.1| - 4.4e-09 36.6 0.0 1e-08 35.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_24 PF13578.6 gi|344212387|ref|YP_004796707.1| - 1.7e-14 54.7 0.1 2.9e-14 54.0 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain CmcI PF04989.12 gi|344212387|ref|YP_004796707.1| - 1.2e-10 41.4 0.0 1.5e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Cephalosporin hydroxylase FtsJ PF01728.19 gi|344212387|ref|YP_004796707.1| - 4.7e-06 26.8 0.0 5.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|344212387|ref|YP_004796707.1| - 0.024 14.5 0.0 0.051 13.4 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Polysacc_synt_3 PF13440.6 gi|344212388|ref|YP_004796708.1| - 8.5e-82 274.7 3.7 8.5e-82 274.7 3.7 2.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|344212388|ref|YP_004796708.1| - 4e-37 128.1 11.4 4e-37 128.1 11.4 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Orai-1 PF07856.12 gi|344212388|ref|YP_004796708.1| - 0.00042 20.1 1.0 0.00087 19.0 0.1 2.0 2 0 0 2 2 2 1 Mediator of CRAC channel activity IRK_N PF08466.10 gi|344212389|ref|YP_004796709.1| - 0.058 13.6 0.1 0.087 13.0 0.1 1.3 1 0 0 1 1 1 0 Inward rectifier potassium channel N-terminal SecY PF00344.20 gi|344212390|ref|YP_004796710.1| - 1.2e-70 238.2 16.9 1.5e-70 237.9 16.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|344212390|ref|YP_004796710.1| - 2.9e-09 36.6 0.9 7.6e-09 35.3 0.9 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|344212391|ref|YP_004796711.1| - 3e-18 66.7 0.3 4.8e-18 66.1 0.3 1.3 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|344212392|ref|YP_004796712.1| - 3.2e-09 36.5 0.0 4.8e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e CAF1A PF12253.8 gi|344212392|ref|YP_004796712.1| - 0.036 14.2 0.1 0.056 13.6 0.1 1.3 1 0 0 1 1 1 0 Chromatin assembly factor 1 subunit A Ribosomal_S5_C PF03719.15 gi|344212393|ref|YP_004796713.1| - 8e-25 86.1 0.0 1.2e-24 85.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|344212393|ref|YP_004796713.1| - 4.1e-22 77.9 0.1 9.5e-22 76.8 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L5e PF17144.4 gi|344212394|ref|YP_004796714.1| - 2.1e-25 89.6 0.0 3.8e-15 56.3 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|344212394|ref|YP_004796714.1| - 1.2e-07 32.1 0.0 1.5e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|344212395|ref|YP_004796715.1| - 1.1e-56 191.0 5.7 1.2e-56 190.8 5.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.9 gi|344212395|ref|YP_004796715.1| - 0.03 14.0 1.1 0.53 10.1 0.3 3.0 2 1 0 2 2 2 0 Short C-terminal domain SAND PF01342.21 gi|344212395|ref|YP_004796715.1| - 0.15 11.8 0.2 0.24 11.1 0.2 1.3 1 0 0 1 1 1 0 SAND domain Ribosomal_L32e PF01655.18 gi|344212396|ref|YP_004796716.1| - 2.2e-35 121.4 0.4 7.7e-35 119.6 0.6 1.7 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|344212396|ref|YP_004796716.1| - 1.3e-14 54.5 1.5 1.1e-13 51.5 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|344212396|ref|YP_004796716.1| - 7.6e-07 28.9 0.0 5e-06 26.3 0.0 2.3 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|344212396|ref|YP_004796716.1| - 6e-06 25.9 0.2 0.012 15.5 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|344212396|ref|YP_004796716.1| - 1.6e-05 25.1 0.0 0.00037 20.7 0.0 2.8 2 2 1 3 3 3 1 Pathogenicity locus HHH_2 PF12826.7 gi|344212396|ref|YP_004796716.1| - 0.00015 21.7 0.1 0.0014 18.7 0.1 2.2 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|344212396|ref|YP_004796716.1| - 0.0035 17.7 0.2 0.81 10.1 0.1 2.6 1 1 1 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|344212396|ref|YP_004796716.1| - 0.004 17.4 0.1 1 9.6 0.1 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix motif BAF PF02961.14 gi|344212396|ref|YP_004796716.1| - 0.062 13.7 0.0 1.3 9.5 0.0 2.5 2 0 0 2 2 2 0 Barrier to autointegration factor IMS_HHH PF11798.8 gi|344212396|ref|YP_004796716.1| - 0.12 12.7 0.0 6.5 7.3 0.0 2.5 2 0 0 2 2 2 0 IMS family HHH motif Ribosomal_L6 PF00347.23 gi|344212397|ref|YP_004796717.1| - 3.8e-31 107.6 0.3 6.7e-15 55.5 0.0 2.0 2 0 0 2 2 2 2 Ribosomal protein L6 ArsA_HSP20 PF17886.1 gi|344212397|ref|YP_004796717.1| - 0.16 11.5 2.4 22 4.7 0.0 3.5 4 0 0 4 4 4 0 HSP20-like domain found in ArsA Ribosomal_S8 PF00410.19 gi|344212398|ref|YP_004796718.1| - 3e-23 82.2 0.0 3.9e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|344212399|ref|YP_004796719.1| - 4.1e-10 39.3 1.3 4.5e-10 39.1 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|344212399|ref|YP_004796719.1| - 0.0014 18.5 0.1 0.0018 18.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L5 PF00281.19 gi|344212400|ref|YP_004796720.1| - 3.6e-20 72.0 0.0 6e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_L5_C PF00673.21 gi|344212400|ref|YP_004796720.1| - 2.2e-19 69.4 0.0 3.5e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_S4e PF00900.20 gi|344212401|ref|YP_004796721.1| - 4.2e-19 68.2 0.0 8e-19 67.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|344212401|ref|YP_004796721.1| - 1.6e-05 24.5 0.3 3.7e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|344212401|ref|YP_004796721.1| - 0.0023 17.8 0.2 0.0083 16.1 0.1 2.1 1 1 0 1 1 1 1 KOW motif Peptidase_S24 PF00717.23 gi|344212401|ref|YP_004796721.1| - 0.0083 16.1 0.0 0.022 14.7 0.0 1.8 1 0 0 1 1 1 1 Peptidase S24-like Nha1_C PF08619.10 gi|344212401|ref|YP_004796721.1| - 0.3 10.3 0.5 0.38 9.9 0.5 1.1 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus Ribosomal_L26 PF16906.5 gi|344212402|ref|YP_004796722.1| - 2.6e-23 82.3 0.1 3e-23 82.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|344212402|ref|YP_004796722.1| - 8.1e-09 35.1 1.4 1.4e-08 34.4 0.4 1.9 2 0 0 2 2 2 1 KOW motif DUF4162 PF13732.6 gi|344212402|ref|YP_004796722.1| - 0.05 14.3 0.4 0.078 13.7 0.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4162) Ribosomal_L14 PF00238.19 gi|344212403|ref|YP_004796723.1| - 4.2e-36 123.7 0.2 5e-36 123.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|344212404|ref|YP_004796724.1| - 1.9e-26 92.0 0.8 2.3e-26 91.7 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|344212404|ref|YP_004796724.1| - 0.0057 17.0 0.0 0.011 16.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|344212405|ref|YP_004796725.1| - 1.5e-24 85.7 0.0 1.7e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|344212406|ref|YP_004796726.1| - 6.3e-20 70.9 0.2 8.3e-20 70.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Ribosomal_S3_C PF00189.20 gi|344212407|ref|YP_004796727.1| - 5.7e-21 74.8 0.8 1.2e-20 73.8 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|344212407|ref|YP_004796727.1| - 6.6e-17 61.1 0.0 1.7e-16 59.8 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|344212407|ref|YP_004796727.1| - 0.00047 19.9 0.5 0.0058 16.4 0.1 2.9 3 0 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|344212407|ref|YP_004796727.1| - 4.6 7.2 5.7 0.54 10.2 0.2 2.4 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|344212408|ref|YP_004796728.1| - 6.6e-21 74.5 0.0 8.2e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|344212409|ref|YP_004796729.1| - 8.4e-30 102.5 0.0 1.5e-29 101.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|344212409|ref|YP_004796729.1| - 0.13 11.3 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L2_C PF03947.18 gi|344212410|ref|YP_004796730.1| - 4e-46 156.3 2.0 6e-46 155.7 2.0 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|344212410|ref|YP_004796730.1| - 8.9e-18 64.0 0.0 3.6e-17 62.1 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|344212411|ref|YP_004796731.1| - 1.7e-16 60.3 1.2 1.4e-15 57.4 1.2 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 Fusion_F0 PF13044.6 gi|344212411|ref|YP_004796731.1| - 0.12 11.0 0.2 0.12 11.0 0.2 1.0 1 0 0 1 1 1 0 Fusion glycoprotein F0, Isavirus TusA PF01206.17 gi|344212411|ref|YP_004796731.1| - 0.14 12.0 0.2 0.19 11.6 0.2 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA Ribosomal_L4 PF00573.22 gi|344212412|ref|YP_004796732.1| - 1.2e-40 139.3 0.1 1.4e-40 139.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|344212413|ref|YP_004796733.1| - 1.5e-110 369.6 0.0 3.7e-110 368.4 0.0 1.6 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|344212414|ref|YP_004796734.1| - 1.4e-67 228.3 0.0 1.5e-67 228.1 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF1508 PF07411.12 gi|344212415|ref|YP_004796735.1| - 4.3e-43 144.9 3.2 3.9e-21 74.7 0.5 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) Tombus_P19 PF03220.13 gi|344212415|ref|YP_004796735.1| - 0.0011 18.8 0.2 0.058 13.1 0.0 2.2 2 0 0 2 2 2 1 Tombusvirus P19 core protein CBM9_1 PF06452.11 gi|344212415|ref|YP_004796735.1| - 0.0027 17.6 1.8 0.0038 17.1 1.8 1.3 1 1 0 1 1 1 1 Carbohydrate family 9 binding domain-like DUF406 PF04175.12 gi|344212415|ref|YP_004796735.1| - 0.069 13.6 1.1 16 6.0 0.0 3.5 3 2 2 5 5 5 0 Protein of unknown function (DUF406) DUF4097 PF13349.6 gi|344212415|ref|YP_004796735.1| - 0.073 12.4 0.7 0.43 9.9 0.1 2.1 2 1 1 3 3 3 0 Putative adhesin SpaA PF17802.1 gi|344212415|ref|YP_004796735.1| - 0.085 13.2 5.0 0.083 13.2 0.7 2.5 2 1 1 3 3 3 0 Prealbumin-like fold domain IMP2_C PF18591.1 gi|344212415|ref|YP_004796735.1| - 0.11 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Immune Mapped Protein 2 (IMP2) C-terminal domain Thiamine_BP PF01910.17 gi|344212416|ref|YP_004796736.1| - 2.8e-25 88.0 0.2 3.4e-25 87.8 0.2 1.0 1 0 0 1 1 1 1 Thiamine-binding protein AvrL567-A PF11529.8 gi|344212416|ref|YP_004796736.1| - 0.15 12.3 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Melampsora lini avirulence protein AvrL567-A MCH PF02289.16 gi|344212417|ref|YP_004796737.1| - 6.7e-113 377.1 1.1 7.5e-113 376.9 1.1 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GTP_EFTU PF00009.27 gi|344212419|ref|YP_004796739.1| - 1.7e-33 115.8 0.3 2.5e-33 115.3 0.3 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|344212419|ref|YP_004796739.1| - 4.5e-12 46.2 0.6 1.4e-11 44.6 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|344212419|ref|YP_004796739.1| - 1.9e-06 28.1 0.0 7.3e-06 26.3 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|344212419|ref|YP_004796739.1| - 0.0052 16.7 0.8 0.3 11.0 0.1 2.9 2 1 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|344212419|ref|YP_004796739.1| - 0.0063 16.3 1.9 0.014 15.2 0.1 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Polysacc_deac_1 PF01522.21 gi|344212419|ref|YP_004796739.1| - 0.077 12.9 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase MMR_HSR1 PF01926.23 gi|344212419|ref|YP_004796739.1| - 0.082 13.0 0.1 0.49 10.5 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase Hydrolase_3 PF08282.12 gi|344212420|ref|YP_004796740.1| - 1.3e-26 93.9 0.0 7.4e-17 61.9 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344212420|ref|YP_004796740.1| - 1.3e-08 35.4 1.6 0.00057 20.2 0.0 3.1 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|344212420|ref|YP_004796740.1| - 1.5e-08 34.5 0.0 2.4e-07 30.6 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|344212420|ref|YP_004796740.1| - 0.021 15.2 2.5 6.3 7.1 0.0 3.1 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344212420|ref|YP_004796740.1| - 0.025 14.7 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|344212420|ref|YP_004796740.1| - 0.1 11.7 0.0 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase DnaJ PF00226.31 gi|344212421|ref|YP_004796741.1| - 7e-15 54.9 0.0 1e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|344212421|ref|YP_004796741.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.6 1 1 0 1 1 1 0 A repeated domain in UCH-protein CobD_Cbib PF03186.13 gi|344212421|ref|YP_004796741.1| - 0.064 12.5 0.2 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 CobD/Cbib protein TPR_21 PF09976.9 gi|344212421|ref|YP_004796741.1| - 0.084 12.6 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain eIF-3_zeta PF05091.12 gi|344212421|ref|YP_004796741.1| - 0.26 10.2 2.0 0.3 10.0 2.0 1.0 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Ribonuc_red_lgC PF02867.15 gi|344212422|ref|YP_004796742.1| - 1.1e-158 529.0 0.0 1.4e-158 528.7 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|344212422|ref|YP_004796742.1| - 1.3e-25 89.2 0.0 5e-25 87.3 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain Oxidored_molyb PF00174.19 gi|344212424|ref|YP_004796744.1| - 8.2e-36 123.2 0.0 1.4e-35 122.5 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|344212424|ref|YP_004796744.1| - 2e-10 40.8 0.0 4.7e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.20 gi|344212424|ref|YP_004796744.1| - 0.061 13.3 0.2 0.18 11.9 0.2 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat BPL_LplA_LipB_2 PF16917.5 gi|344212424|ref|YP_004796744.1| - 0.43 10.1 3.6 0.73 9.3 3.6 1.3 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family PAS_9 PF13426.7 gi|344212425|ref|YP_004796745.1| - 1.1e-42 144.5 2.0 1.7e-13 50.7 0.1 4.4 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.10 gi|344212425|ref|YP_004796745.1| - 3.4e-42 143.2 5.4 5.9e-16 58.7 0.2 4.2 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|344212425|ref|YP_004796745.1| - 7e-39 132.3 1.2 5.3e-14 52.2 0.0 3.8 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.12 gi|344212425|ref|YP_004796745.1| - 6e-38 129.0 0.1 2e-13 50.4 0.1 4.5 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.7 gi|344212425|ref|YP_004796745.1| - 9.2e-21 73.4 0.7 3.4e-07 30.1 0.0 4.7 5 0 0 5 5 5 3 PAS domain Response_reg PF00072.24 gi|344212425|ref|YP_004796745.1| - 1.1e-20 73.8 0.0 3.3e-20 72.3 0.0 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|344212425|ref|YP_004796745.1| - 2.8e-15 56.8 0.0 6.6e-15 55.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344212425|ref|YP_004796745.1| - 2.6e-13 49.8 0.2 1.4e-12 47.5 0.2 2.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|344212425|ref|YP_004796745.1| - 0.0028 18.2 0.1 0.37 11.4 0.0 3.3 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.6 gi|344212425|ref|YP_004796745.1| - 0.0058 16.6 0.7 0.022 14.7 0.2 2.2 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain SNARE_assoc PF09335.11 gi|344212426|ref|YP_004796746.1| - 1.5e-17 64.2 5.2 1.5e-17 64.2 5.2 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF2240 PF09999.9 gi|344212427|ref|YP_004796747.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2240) SlyX PF04102.12 gi|344212428|ref|YP_004796748.1| - 0.0023 18.5 4.3 0.006 17.2 4.3 1.7 1 0 0 1 1 1 1 SlyX DUF16 PF01519.16 gi|344212428|ref|YP_004796748.1| - 0.0058 17.1 1.4 0.01 16.3 0.9 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF16 MPS2 PF17060.5 gi|344212428|ref|YP_004796748.1| - 0.07 12.4 0.4 0.13 11.5 0.4 1.3 1 0 0 1 1 1 0 Monopolar spindle protein 2 COG2 PF06148.11 gi|344212428|ref|YP_004796748.1| - 0.11 12.6 1.0 0.19 11.8 1.0 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4140 PF13600.6 gi|344212428|ref|YP_004796748.1| - 0.14 12.6 5.0 0.2 12.1 4.1 1.8 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4407 PF14362.6 gi|344212428|ref|YP_004796748.1| - 0.14 11.5 3.5 0.19 11.0 3.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ATG16 PF08614.11 gi|344212428|ref|YP_004796748.1| - 0.51 10.5 7.8 0.97 9.6 7.8 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DivIC PF04977.15 gi|344212428|ref|YP_004796748.1| - 5 7.0 7.0 12 5.8 7.0 1.7 1 1 0 1 1 1 0 Septum formation initiator HalX PF08663.10 gi|344212429|ref|YP_004796749.1| - 5.6e-22 77.8 8.6 1.8e-21 76.2 8.6 1.9 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|344212429|ref|YP_004796749.1| - 2.5e-18 66.3 0.8 5e-18 65.3 0.8 1.5 1 0 0 1 1 1 1 Response regulator receiver domain MtrG PF04210.13 gi|344212429|ref|YP_004796749.1| - 0.13 12.1 0.1 0.3 11.0 0.1 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G Radical_SAM PF04055.21 gi|344212429|ref|YP_004796749.1| - 0.14 12.5 0.4 0.58 10.5 0.1 1.9 1 1 0 2 2 2 0 Radical SAM superfamily TssO PF17561.2 gi|344212429|ref|YP_004796749.1| - 0.15 12.1 0.2 0.24 11.5 0.2 1.2 1 0 0 1 1 1 0 Type VI secretion system, TssO Putative_PNPOx PF01243.20 gi|344212430|ref|YP_004796750.1| - 0.037 14.2 0.0 0.052 13.7 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF4349 PF14257.6 gi|344212432|ref|YP_004796752.1| - 0.079 12.4 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) adh_short PF00106.25 gi|344212433|ref|YP_004796753.1| - 3.7e-36 124.4 0.0 5.7e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344212433|ref|YP_004796753.1| - 4e-27 95.3 0.1 6.4e-27 94.6 0.1 1.3 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344212433|ref|YP_004796753.1| - 7.9e-06 25.9 0.2 1.3e-05 25.2 0.2 1.3 1 1 0 1 1 1 1 KR domain EF-hand_8 PF13833.6 gi|344212433|ref|YP_004796753.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 EF-hand domain pair Peptidase_M50 PF02163.22 gi|344212437|ref|YP_004796757.1| - 7.3e-10 38.5 9.6 2e-05 24.0 0.3 2.5 1 1 1 2 2 2 2 Peptidase family M50 SMC_ScpA PF02616.14 gi|344212438|ref|YP_004796758.1| - 3e-12 47.0 0.0 4.7e-09 36.5 0.0 2.2 2 0 0 2 2 2 2 Segregation and condensation protein ScpA XkdW PF09636.10 gi|344212438|ref|YP_004796758.1| - 0.18 11.9 0.5 26 5.0 0.1 2.8 2 1 1 3 3 3 0 XkdW protein SMC_N PF02463.19 gi|344212439|ref|YP_004796759.1| - 1.2e-41 142.5 75.8 2.7e-40 138.1 75.8 3.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|344212439|ref|YP_004796759.1| - 1.2e-28 99.8 0.0 3.3e-28 98.3 0.0 1.8 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|344212439|ref|YP_004796759.1| - 6.4e-14 52.9 26.1 6.4e-14 52.9 26.1 8.8 2 2 1 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|344212439|ref|YP_004796759.1| - 1.2e-11 44.9 57.0 4.7e-11 43.0 0.2 5.0 2 2 2 4 4 4 1 AAA ATPase domain Spc7 PF08317.11 gi|344212439|ref|YP_004796759.1| - 6.8e-10 38.3 146.7 0.0016 17.4 18.0 8.0 2 2 6 8 8 8 5 Spc7 kinetochore protein AAA_21 PF13304.6 gi|344212439|ref|YP_004796759.1| - 9e-08 32.3 36.7 3.5e-05 23.8 0.0 5.5 3 2 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|344212439|ref|YP_004796759.1| - 2.2e-07 30.0 106.0 0.00085 18.1 33.5 5.9 3 2 3 6 6 6 2 AAA domain AAA_29 PF13555.6 gi|344212439|ref|YP_004796759.1| - 1.1e-06 28.3 0.0 2.6e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATG16 PF08614.11 gi|344212439|ref|YP_004796759.1| - 2.1e-06 28.1 154.0 0.025 14.8 28.2 8.2 3 2 5 8 8 8 5 Autophagy protein 16 (ATG16) Fib_alpha PF08702.10 gi|344212439|ref|YP_004796759.1| - 4.1e-06 27.0 79.7 7e-05 23.0 7.8 7.3 3 2 3 7 7 7 3 Fibrinogen alpha/beta chain family DUF745 PF05335.13 gi|344212439|ref|YP_004796759.1| - 0.00017 21.3 9.7 0.00017 21.3 9.7 6.7 3 2 4 7 7 7 1 Protein of unknown function (DUF745) Lebercilin PF15619.6 gi|344212439|ref|YP_004796759.1| - 0.00019 21.2 19.4 0.00019 21.2 19.4 6.3 3 2 3 6 6 6 1 Ciliary protein causing Leber congenital amaurosis disease DUF948 PF06103.11 gi|344212439|ref|YP_004796759.1| - 0.0016 18.7 2.2 0.0016 18.7 2.2 8.8 4 3 5 9 9 8 1 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|344212439|ref|YP_004796759.1| - 0.0085 15.7 119.4 0.015 14.9 4.8 6.6 2 2 5 7 7 7 5 Mechanosensitive ion channel porin domain DUF724 PF05266.14 gi|344212439|ref|YP_004796759.1| - 0.0096 15.8 11.6 0.0096 15.8 11.6 8.5 2 2 7 9 9 9 5 Protein of unknown function (DUF724) TMF_DNA_bd PF12329.8 gi|344212439|ref|YP_004796759.1| - 0.012 15.6 11.1 0.012 15.6 11.1 12.0 3 3 7 13 13 12 0 TATA element modulatory factor 1 DNA binding ABC_tran_CTD PF16326.5 gi|344212439|ref|YP_004796759.1| - 0.014 15.6 173.6 0.041 14.1 13.3 13.1 5 5 7 13 13 12 0 ABC transporter C-terminal domain APG6_N PF17675.1 gi|344212439|ref|YP_004796759.1| - 0.02 15.4 187.5 0.32 11.5 28.5 9.9 2 2 6 9 9 8 0 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|344212439|ref|YP_004796759.1| - 0.037 14.0 157.6 0.019 15.0 19.1 8.7 3 2 4 7 7 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|344212439|ref|YP_004796759.1| - 0.042 12.9 96.2 0.0089 15.2 7.5 6.6 2 2 4 6 6 6 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|344212439|ref|YP_004796759.1| - 0.12 11.7 115.2 0.29 10.5 12.5 6.8 2 2 4 6 6 6 0 Domain of unknown function (DUF4407) DUF1664 PF07889.12 gi|344212439|ref|YP_004796759.1| - 0.18 11.9 88.7 0.43 10.6 7.3 10.2 2 2 12 14 14 14 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|344212439|ref|YP_004796759.1| - 0.22 11.6 42.9 1 9.4 1.7 8.1 3 2 5 9 9 9 0 Baculovirus polyhedron envelope protein, PEP, C terminus EzrA PF06160.12 gi|344212439|ref|YP_004796759.1| - 0.45 8.6 124.3 0.011 14.0 23.7 4.8 2 2 1 3 3 3 0 Septation ring formation regulator, EzrA FPP PF05911.11 gi|344212439|ref|YP_004796759.1| - 0.82 7.8 117.9 0.014 13.7 12.4 5.1 2 2 3 5 5 5 0 Filament-like plant protein, long coiled-coil MukB PF04310.12 gi|344212439|ref|YP_004796759.1| - 1.5 8.6 0.0 1.5 8.6 0.0 5.4 6 0 0 6 6 5 0 MukB N-terminal GAS PF13851.6 gi|344212439|ref|YP_004796759.1| - 1.6 8.0 126.8 0.16 11.3 11.8 7.3 2 2 5 7 7 6 0 Growth-arrest specific micro-tubule binding Fez1 PF06818.15 gi|344212439|ref|YP_004796759.1| - 1.9 8.9 129.2 0.49 10.8 15.3 7.2 2 2 4 6 6 6 0 Fez1 Laminin_II PF06009.12 gi|344212439|ref|YP_004796759.1| - 3.3 7.7 84.3 0.34 10.9 4.0 9.4 3 2 5 11 11 11 0 Laminin Domain II UPF0242 PF06785.11 gi|344212439|ref|YP_004796759.1| - 3.4 7.7 152.8 1.2 9.2 18.5 6.8 2 2 4 6 6 6 0 Uncharacterised protein family (UPF0242) N-terminus SlyX PF04102.12 gi|344212440|ref|YP_004796760.1| - 0.0013 19.3 0.1 0.0013 19.3 0.1 1.7 2 0 0 2 2 2 1 SlyX Spc7 PF08317.11 gi|344212440|ref|YP_004796760.1| - 0.0027 16.7 0.3 0.0027 16.7 0.3 1.4 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF3583 PF12126.8 gi|344212440|ref|YP_004796760.1| - 0.0041 16.6 2.3 0.0046 16.5 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3583) FlaC_arch PF05377.11 gi|344212440|ref|YP_004796760.1| - 0.0048 17.3 1.4 0.0082 16.5 1.4 1.4 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) HSBP1 PF06825.12 gi|344212440|ref|YP_004796760.1| - 0.024 14.5 0.3 0.3 11.0 0.0 2.1 1 1 1 2 2 2 0 Heat shock factor binding protein 1 DUF4200 PF13863.6 gi|344212440|ref|YP_004796760.1| - 0.025 15.0 0.9 0.18 12.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) PKcGMP_CC PF16808.5 gi|344212440|ref|YP_004796760.1| - 0.029 14.2 2.7 4.3 7.3 0.2 2.4 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase bZIP_1 PF00170.21 gi|344212440|ref|YP_004796760.1| - 0.029 14.5 0.2 0.048 13.8 0.2 1.4 1 0 0 1 1 1 0 bZIP transcription factor Packaging_FI PF14000.6 gi|344212440|ref|YP_004796760.1| - 0.061 13.8 11.0 0.092 13.2 11.0 1.3 1 0 0 1 1 1 0 DNA packaging protein FI Bcr-Abl_Oligo PF09036.10 gi|344212440|ref|YP_004796760.1| - 0.07 13.1 0.3 0.12 12.4 0.3 1.4 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain CCDC53 PF10152.9 gi|344212440|ref|YP_004796760.1| - 0.15 12.4 5.3 0.19 12.2 5.3 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex Cnn_1N PF07989.11 gi|344212440|ref|YP_004796760.1| - 0.19 11.9 0.3 0.19 11.9 0.3 1.8 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 JIP_LZII PF16471.5 gi|344212440|ref|YP_004796760.1| - 1.2 9.3 7.2 0.088 13.0 2.4 1.6 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II L_lactis_ph-MCP PF06673.11 gi|344212440|ref|YP_004796760.1| - 1.3 7.9 6.0 1.1 8.2 1.7 2.1 1 1 1 2 2 2 0 Lactococcus lactis bacteriophage major capsid protein GatB_N PF02934.15 gi|344212441|ref|YP_004796761.1| - 6.6e-97 324.2 0.1 1.2e-96 323.3 0.0 1.4 2 0 0 2 2 2 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|344212441|ref|YP_004796761.1| - 3.8e-39 133.9 0.0 5.8e-39 133.3 0.0 1.3 1 0 0 1 1 1 1 GatB domain Tox-HDC PF15656.6 gi|344212441|ref|YP_004796761.1| - 0.13 12.4 0.1 16 5.7 0.0 2.7 3 0 0 3 3 3 0 Toxin with a H, D/N and C signature DUF3784 PF12650.7 gi|344212443|ref|YP_004796763.1| - 0.13 12.5 0.3 0.13 12.5 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) COX7a PF02238.15 gi|344212443|ref|YP_004796763.1| - 0.32 11.4 1.7 4.1 7.9 0.1 2.6 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII ATP_synt_H PF05493.13 gi|344212443|ref|YP_004796763.1| - 0.78 10.3 4.7 0.27 11.7 1.5 1.8 2 0 0 2 2 2 0 ATP synthase subunit H Topoisom_bac PF01131.20 gi|344212444|ref|YP_004796764.1| - 2.4e-125 418.8 0.0 3.2e-125 418.4 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|344212444|ref|YP_004796764.1| - 1e-19 70.0 3.6 4.1e-14 52.1 2.1 4.1 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|344212444|ref|YP_004796764.1| - 4.8e-18 65.3 0.2 1.3e-17 63.9 0.1 1.9 2 0 0 2 2 2 1 Toprim domain HHH_5 PF14520.6 gi|344212444|ref|YP_004796764.1| - 6.5e-10 39.5 1.3 6.5e-09 36.3 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|344212444|ref|YP_004796764.1| - 0.0024 18.0 0.0 0.0073 16.5 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|344212444|ref|YP_004796764.1| - 0.0088 15.8 0.1 0.067 13.0 0.1 2.6 2 1 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|344212444|ref|YP_004796764.1| - 0.034 14.0 0.0 0.14 12.1 0.0 2.1 1 0 0 1 1 1 0 Helix-hairpin-helix motif Erp_C PF06780.11 gi|344212444|ref|YP_004796764.1| - 0.12 12.4 0.2 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 Erp protein C-terminus Lar_restr_allev PF14354.6 gi|344212444|ref|YP_004796764.1| - 0.26 11.7 13.9 0.31 11.5 4.8 3.4 2 1 1 3 3 3 0 Restriction alleviation protein Lar DUF1451 PF07295.11 gi|344212444|ref|YP_004796764.1| - 3 7.9 10.5 20 5.2 2.2 3.6 2 1 0 2 2 2 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|344212444|ref|YP_004796764.1| - 4.5 7.5 14.5 7.3 6.8 0.1 4.2 3 1 1 4 4 4 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|344212444|ref|YP_004796764.1| - 5.5 6.4 7.8 27 4.2 1.1 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|344212444|ref|YP_004796764.1| - 6.4 6.4 9.7 4.4 6.9 0.0 3.7 3 1 0 3 3 3 0 TFIIB zinc-binding Rad50_zn_hook PF04423.14 gi|344212445|ref|YP_004796765.1| - 0.0055 16.5 1.8 0.54 10.1 0.2 2.1 2 0 0 2 2 2 1 Rad50 zinc hook motif Prok-RING_4 PF14447.6 gi|344212445|ref|YP_004796765.1| - 0.0082 16.0 0.4 0.87 9.5 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 Anti-TRAP PF15777.5 gi|344212445|ref|YP_004796765.1| - 0.0088 16.0 0.7 0.25 11.4 0.8 2.1 1 1 1 2 2 2 1 Tryptophan RNA-binding attenuator protein inhibitory protein Sgf11 PF08209.11 gi|344212445|ref|YP_004796765.1| - 0.02 14.4 2.2 0.22 11.1 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-LSD1 PF06943.12 gi|344212445|ref|YP_004796765.1| - 0.022 14.6 0.7 1.8 8.5 0.1 2.2 2 0 0 2 2 2 0 LSD1 zinc finger zf-H2C2_2 PF13465.6 gi|344212445|ref|YP_004796765.1| - 0.027 14.9 0.1 6.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TRAF6_Z2 PF18048.1 gi|344212445|ref|YP_004796765.1| - 0.035 14.2 3.9 2.6 8.2 0.2 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 zinc_ribbon_9 PF14369.6 gi|344212445|ref|YP_004796765.1| - 0.042 14.1 1.2 0.54 10.6 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon zf-WRNIP1_ubi PF18279.1 gi|344212445|ref|YP_004796765.1| - 0.068 13.8 3.8 5.1 8.0 0.2 2.3 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain DUF1178 PF06676.11 gi|344212445|ref|YP_004796765.1| - 0.079 13.4 2.1 2.4 8.5 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) zf-Di19 PF05605.12 gi|344212445|ref|YP_004796765.1| - 0.1 12.9 3.7 3.5 8.0 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C6H2 PF15801.5 gi|344212445|ref|YP_004796765.1| - 0.14 12.5 0.2 16 5.9 0.0 2.1 2 0 0 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding Zn-C2H2_12 PF18112.1 gi|344212445|ref|YP_004796765.1| - 0.2 12.1 5.6 5 7.7 1.1 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-Nse PF11789.8 gi|344212445|ref|YP_004796765.1| - 0.21 11.4 3.5 6.4 6.7 3.5 2.1 1 1 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit zf-C2H2_jaz PF12171.8 gi|344212445|ref|YP_004796765.1| - 0.28 11.5 0.2 34 4.9 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding Prok-RING_1 PF14446.6 gi|344212445|ref|YP_004796765.1| - 0.41 10.6 3.9 7 6.7 1.5 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Prim_Zn_Ribbon PF08273.12 gi|344212445|ref|YP_004796765.1| - 0.52 10.6 3.4 3.8 7.9 0.3 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase UPF0547 PF10571.9 gi|344212445|ref|YP_004796765.1| - 1.2 9.3 8.8 1.7 8.8 2.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rieske PF00355.26 gi|344212446|ref|YP_004796766.1| - 4e-08 33.1 0.1 5.4e-08 32.7 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Bacteriocin_IIc PF10439.9 gi|344212447|ref|YP_004796767.1| - 4.4 7.5 10.5 2 8.6 1.2 2.6 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide PcrB PF01884.17 gi|344212448|ref|YP_004796768.1| - 4.5e-57 193.1 2.0 5.5e-57 192.8 2.0 1.0 1 0 0 1 1 1 1 PcrB family Sun2_CC2 PF18580.1 gi|344212448|ref|YP_004796768.1| - 0.13 12.5 2.6 0.3 11.3 0.3 2.2 2 0 0 2 2 2 0 SUN2 coiled coil domain 2 AA_permease_2 PF13520.6 gi|344212449|ref|YP_004796769.1| - 1.9e-45 155.5 39.1 2.4e-45 155.2 39.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|344212449|ref|YP_004796769.1| - 2.8e-43 148.2 38.5 3.9e-43 147.7 38.5 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|344212449|ref|YP_004796769.1| - 4.9e-05 23.9 1.8 6.4e-05 23.5 0.5 1.9 2 0 0 2 2 2 1 Universal stress protein family AA_permease_C PF13906.6 gi|344212449|ref|YP_004796769.1| - 0.017 15.2 4.9 0.017 15.2 4.9 2.7 2 0 0 2 2 2 0 C-terminus of AA_permease TrkA_N PF02254.18 gi|344212450|ref|YP_004796770.1| - 1.8e-10 41.1 0.2 2.4e-10 40.7 0.2 1.1 1 0 0 1 1 1 1 TrkA-N domain HTH_24 PF13412.6 gi|344212451|ref|YP_004796771.1| - 2.1e-12 46.4 0.3 3.1e-12 45.9 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344212451|ref|YP_004796771.1| - 8e-12 44.8 1.4 1.5e-11 43.9 1.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344212451|ref|YP_004796771.1| - 3.2e-10 39.8 0.0 6.4e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344212451|ref|YP_004796771.1| - 7.2e-07 29.2 0.0 1.4e-06 28.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|344212451|ref|YP_004796771.1| - 5.8e-06 26.0 0.1 1.7e-05 24.5 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|344212451|ref|YP_004796771.1| - 3.3e-05 24.0 0.0 6.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|344212451|ref|YP_004796771.1| - 0.00017 21.4 0.0 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|344212451|ref|YP_004796771.1| - 0.00032 21.0 0.1 0.00077 19.8 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|344212451|ref|YP_004796771.1| - 0.00032 20.5 0.1 0.00046 20.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|344212451|ref|YP_004796771.1| - 0.00043 20.0 0.1 0.00079 19.1 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|344212451|ref|YP_004796771.1| - 0.00046 20.3 0.8 0.0022 18.1 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344212451|ref|YP_004796771.1| - 0.002 17.7 0.2 0.0037 16.9 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|344212451|ref|YP_004796771.1| - 0.0021 17.8 0.1 0.004 16.9 0.1 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_Mga PF08280.11 gi|344212451|ref|YP_004796771.1| - 0.005 16.8 0.0 0.0079 16.2 0.0 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 gi|344212451|ref|YP_004796771.1| - 0.0058 16.5 0.0 0.0092 15.9 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|344212451|ref|YP_004796771.1| - 0.0068 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|344212451|ref|YP_004796771.1| - 0.0095 15.9 0.0 0.028 14.4 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain FUR PF01475.19 gi|344212451|ref|YP_004796771.1| - 0.011 15.9 0.1 0.017 15.2 0.1 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_36 PF13730.6 gi|344212451|ref|YP_004796771.1| - 0.012 15.6 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|344212451|ref|YP_004796771.1| - 0.013 15.0 0.1 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|344212451|ref|YP_004796771.1| - 0.022 14.1 0.2 0.043 13.2 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|344212451|ref|YP_004796771.1| - 0.023 15.2 0.1 0.05 14.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.21 gi|344212451|ref|YP_004796771.1| - 0.032 13.9 0.2 0.071 12.8 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|344212451|ref|YP_004796771.1| - 0.033 14.0 0.2 0.056 13.2 0.2 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.10 gi|344212451|ref|YP_004796771.1| - 0.038 13.9 0.2 0.1 12.6 0.1 1.8 2 0 0 2 2 1 0 Ribonuclease R winged-helix domain HTH_Tnp_Tc3_2 PF01498.18 gi|344212451|ref|YP_004796771.1| - 0.038 14.2 0.1 0.061 13.6 0.1 1.3 1 0 0 1 1 1 0 Transposase HrcA_DNA-bdg PF03444.15 gi|344212451|ref|YP_004796771.1| - 0.057 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TrmB PF01978.19 gi|344212451|ref|YP_004796771.1| - 0.062 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sigma70_r3 PF04539.16 gi|344212451|ref|YP_004796771.1| - 0.074 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_1 PF00126.27 gi|344212451|ref|YP_004796771.1| - 0.076 13.0 0.2 0.13 12.2 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|344212451|ref|YP_004796771.1| - 0.082 12.5 0.6 0.16 11.5 0.2 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain RPA_C PF08784.11 gi|344212451|ref|YP_004796771.1| - 0.093 13.4 0.1 0.41 11.3 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal PaaX PF07848.12 gi|344212451|ref|YP_004796771.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein Put_DNA-bind_N PF06971.13 gi|344212451|ref|YP_004796771.1| - 0.14 12.2 0.1 0.27 11.3 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_38 PF13936.6 gi|344212451|ref|YP_004796771.1| - 0.2 11.5 0.3 0.2 11.5 0.3 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|344212453|ref|YP_004796773.1| - 4.8e-26 91.9 0.0 6.5e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212453|ref|YP_004796773.1| - 4.5e-13 49.7 0.2 4.5e-09 36.5 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|344212453|ref|YP_004796773.1| - 0.0061 16.5 0.0 0.0094 15.9 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|344212453|ref|YP_004796773.1| - 0.01 16.2 0.0 0.018 15.4 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|344212453|ref|YP_004796773.1| - 0.045 13.5 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344212453|ref|YP_004796773.1| - 0.061 13.8 0.0 0.091 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|344212453|ref|YP_004796773.1| - 0.24 10.3 0.0 0.33 9.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain ABC2_membrane_2 PF12679.7 gi|344212454|ref|YP_004796774.1| - 1.1e-23 84.0 14.2 1.7e-23 83.4 14.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|344212454|ref|YP_004796774.1| - 9.7e-09 34.8 8.9 1.1e-08 34.6 8.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|344212454|ref|YP_004796774.1| - 3.2e-06 27.2 12.1 2.5e-05 24.3 11.5 2.0 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|344212454|ref|YP_004796774.1| - 0.00044 19.7 15.2 0.00078 18.9 15.2 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|344212454|ref|YP_004796774.1| - 0.00064 19.3 6.5 0.00099 18.7 6.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein tRNA-synt_2 PF00152.20 gi|344212455|ref|YP_004796775.1| - 1.7e-84 283.6 0.0 2e-84 283.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|344212455|ref|YP_004796775.1| - 2.9e-15 56.0 0.4 4.8e-15 55.3 0.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|344212455|ref|YP_004796775.1| - 0.0076 15.8 0.2 0.073 12.5 0.0 2.4 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|344212455|ref|YP_004796775.1| - 0.047 13.7 0.0 0.16 12.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial OB fold (BOF) protein Med30 PF11315.8 gi|344212455|ref|YP_004796775.1| - 0.16 12.1 0.0 0.46 10.7 0.0 1.7 2 0 0 2 2 2 0 Mediator complex subunit 30 Bac_rhodopsin PF01036.18 gi|344212457|ref|YP_004796777.1| - 7.4e-56 189.2 20.8 9.1e-56 188.9 20.8 1.1 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Lig_chan PF00060.26 gi|344212457|ref|YP_004796777.1| - 4.9 7.0 5.5 0.51 10.2 0.7 1.8 2 0 0 2 2 2 0 Ligand-gated ion channel Aldo_ket_red PF00248.21 gi|344212458|ref|YP_004796778.1| - 1.5e-47 162.2 0.0 3.1e-45 154.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_20 PF12840.7 gi|344212459|ref|YP_004796779.1| - 0.053 13.6 0.0 0.2 11.7 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain AA_kinase PF00696.28 gi|344212459|ref|YP_004796779.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Amino acid kinase family PAS_3 PF08447.12 gi|344212460|ref|YP_004796780.1| - 7.6e-37 125.5 0.1 1.6e-25 89.2 0.4 3.4 3 0 0 3 3 3 2 PAS fold BAT PF15915.5 gi|344212460|ref|YP_004796780.1| - 1e-26 93.7 9.1 1e-26 93.7 9.1 3.6 4 1 0 4 4 4 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|344212460|ref|YP_004796780.1| - 8.9e-23 80.6 5.6 6.4e-14 52.1 0.0 4.5 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.7 gi|344212460|ref|YP_004796780.1| - 2.9e-21 75.6 0.0 3.9e-13 49.5 0.0 3.6 3 1 1 4 4 4 2 PAS domain HTH_10 PF04967.12 gi|344212460|ref|YP_004796780.1| - 2.9e-19 68.6 0.1 7.1e-19 67.4 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|344212460|ref|YP_004796780.1| - 2.6e-16 59.6 0.0 2.2e-13 50.2 0.0 3.0 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.6 gi|344212460|ref|YP_004796780.1| - 5.1e-13 49.5 2.5 6.9e-13 49.1 0.1 2.5 3 0 0 3 3 2 1 GAF domain PAS_11 PF14598.6 gi|344212460|ref|YP_004796780.1| - 1.7e-05 24.9 0.0 6.6e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 PAS domain GAF PF01590.26 gi|344212460|ref|YP_004796780.1| - 0.00026 21.6 0.2 0.0012 19.5 0.0 2.2 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|344212460|ref|YP_004796780.1| - 0.0054 16.7 0.0 0.026 14.5 0.0 2.2 1 0 0 1 1 1 1 PAS domain Sigma70_r4 PF04545.16 gi|344212460|ref|YP_004796780.1| - 0.029 13.9 0.7 0.061 12.8 0.1 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 PAS_10 PF13596.6 gi|344212460|ref|YP_004796780.1| - 0.098 13.3 0.0 11 6.7 0.0 3.4 4 0 0 4 4 3 0 PAS domain DUF2218 PF09981.9 gi|344212460|ref|YP_004796780.1| - 0.11 13.0 0.8 0.5 10.8 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) HTH_24 PF13412.6 gi|344212460|ref|YP_004796780.1| - 0.11 12.1 0.1 0.3 10.7 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NYN_YacP PF05991.11 gi|344212460|ref|YP_004796780.1| - 0.22 11.5 1.1 0.64 9.9 1.1 1.7 1 0 0 1 1 1 0 YacP-like NYN domain RTP1_C2 PF10304.9 gi|344212460|ref|YP_004796780.1| - 0.36 10.6 4.4 13 5.6 0.2 3.6 3 0 0 3 3 3 0 Required for nuclear transport of RNA pol II C-terminus 2 DUF2238 PF09997.9 gi|344212461|ref|YP_004796781.1| - 0.00082 19.2 3.2 0.018 14.8 3.2 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) YdjM PF04307.14 gi|344212463|ref|YP_004796783.1| - 0.00035 19.9 16.5 0.0035 16.7 15.9 2.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Pcc1 PF09341.10 gi|344212464|ref|YP_004796784.1| - 5e-09 36.2 0.1 5.2e-09 36.1 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.13 gi|344212465|ref|YP_004796785.1| - 1.8e-10 40.3 6.3 2.1e-10 40.1 6.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|344212465|ref|YP_004796785.1| - 6.3e-05 22.2 0.4 0.0046 16.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|344212465|ref|YP_004796785.1| - 0.0011 19.0 0.3 0.0011 19.0 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|344212465|ref|YP_004796785.1| - 0.0016 18.0 1.6 0.33 10.6 0.3 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|344212465|ref|YP_004796785.1| - 0.0052 16.7 4.6 0.1 12.6 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.9 gi|344212465|ref|YP_004796785.1| - 0.0052 16.8 0.4 0.0092 16.0 0.4 1.4 1 0 0 1 1 1 1 Zinc-finger domain A2L_zn_ribbon PF08792.10 gi|344212465|ref|YP_004796785.1| - 0.0054 16.4 0.8 0.25 11.1 2.2 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain DZR PF12773.7 gi|344212465|ref|YP_004796785.1| - 0.009 16.0 0.9 0.019 14.9 0.9 1.6 1 1 0 1 1 1 1 Double zinc ribbon YacG PF03884.14 gi|344212465|ref|YP_004796785.1| - 0.011 15.5 0.3 0.23 11.2 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG zinc_ribbon_2 PF13240.6 gi|344212465|ref|YP_004796785.1| - 0.013 15.2 2.1 0.17 11.6 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|344212465|ref|YP_004796785.1| - 0.019 15.0 0.2 0.023 14.7 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons RNHCP PF12647.7 gi|344212465|ref|YP_004796785.1| - 0.021 14.8 0.2 0.023 14.7 0.2 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|344212465|ref|YP_004796785.1| - 0.027 14.0 1.9 1.4 8.5 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Lar_restr_allev PF14354.6 gi|344212465|ref|YP_004796785.1| - 0.032 14.6 0.6 0.27 11.6 0.0 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Cys_rich_CPXG PF14255.6 gi|344212465|ref|YP_004796785.1| - 0.041 13.8 0.7 0.13 12.1 0.1 1.9 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF951 PF06107.11 gi|344212465|ref|YP_004796785.1| - 0.05 13.5 1.0 3.8 7.5 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.12 gi|344212465|ref|YP_004796785.1| - 0.057 13.7 0.3 0.63 10.4 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|344212465|ref|YP_004796785.1| - 0.06 12.9 4.0 0.11 12.1 4.0 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Anti-TRAP PF15777.5 gi|344212465|ref|YP_004796785.1| - 0.076 13.0 0.1 0.094 12.7 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Mu-like_Com PF10122.9 gi|344212465|ref|YP_004796785.1| - 0.12 11.9 2.6 0.47 10.0 2.6 1.8 1 1 0 1 1 1 0 Mu-like prophage protein Com OrfB_Zn_ribbon PF07282.11 gi|344212465|ref|YP_004796785.1| - 0.12 12.3 2.5 0.21 11.6 2.3 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF3268 PF11672.8 gi|344212465|ref|YP_004796785.1| - 0.14 12.5 1.1 0.5 10.7 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain Thioredoxin_4 PF13462.6 gi|344212465|ref|YP_004796785.1| - 0.16 12.1 1.8 0.2 11.8 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin CpXC PF14353.6 gi|344212465|ref|YP_004796785.1| - 0.17 12.0 1.3 0.55 10.3 0.3 1.9 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|344212465|ref|YP_004796785.1| - 0.17 12.0 4.0 0.43 10.7 4.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|344212465|ref|YP_004796785.1| - 0.37 10.8 5.5 15 5.6 5.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|344212466|ref|YP_004796786.1| - 2.1e-23 82.2 0.1 2.3e-23 82.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|344212466|ref|YP_004796786.1| - 0.00051 20.0 1.1 0.0008 19.3 1.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|344212466|ref|YP_004796786.1| - 0.00069 19.9 0.6 0.05 14.1 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Rep_fac-A_C PF08646.10 gi|344212466|ref|YP_004796786.1| - 0.0057 16.4 0.3 0.0065 16.2 0.3 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain DUF1610 PF07754.11 gi|344212466|ref|YP_004796786.1| - 0.0094 15.9 1.3 0.019 14.9 1.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|344212466|ref|YP_004796786.1| - 0.035 13.5 2.4 0.21 11.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344212466|ref|YP_004796786.1| - 0.045 13.7 0.7 0.066 13.1 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|344212466|ref|YP_004796786.1| - 0.046 13.7 3.1 1.4 9.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|344212466|ref|YP_004796786.1| - 0.064 13.4 0.2 0.064 13.4 0.2 2.2 2 1 0 2 2 2 0 Zinc ribbon domain Elf1 PF05129.13 gi|344212466|ref|YP_004796786.1| - 0.076 13.1 0.3 0.12 12.4 0.3 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DUF3797 PF12677.7 gi|344212466|ref|YP_004796786.1| - 0.13 12.2 1.3 0.19 11.6 1.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3797) zinc_ribbon_9 PF14369.6 gi|344212466|ref|YP_004796786.1| - 0.24 11.7 0.6 0.24 11.7 0.6 2.4 2 1 1 3 3 3 0 zinc-ribbon Prim_Zn_Ribbon PF08273.12 gi|344212466|ref|YP_004796786.1| - 0.32 11.3 8.9 1.1 9.7 8.9 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 gi|344212466|ref|YP_004796786.1| - 0.52 10.1 5.3 0.63 9.8 0.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|344212466|ref|YP_004796786.1| - 0.57 10.8 3.7 3.2 8.4 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DoxX_2 PF13564.6 gi|344212467|ref|YP_004796787.1| - 0.11 12.7 11.7 0.2 11.8 11.6 1.5 1 1 0 1 1 1 0 DoxX-like family TMEM43 PF07787.12 gi|344212467|ref|YP_004796787.1| - 3 7.1 4.6 3.5 6.9 4.6 1.1 1 0 0 1 1 1 0 Transmembrane protein 43 DUF2103 PF09876.9 gi|344212469|ref|YP_004796789.1| - 2.4e-39 133.2 0.3 5.1e-39 132.2 0.3 1.5 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Candida_ALS PF05792.13 gi|344212469|ref|YP_004796789.1| - 0.062 13.9 4.6 0.14 12.8 4.6 1.6 1 0 0 1 1 1 0 Candida agglutinin-like (ALS) acVLRF1 PF18859.1 gi|344212469|ref|YP_004796789.1| - 0.11 12.8 10.6 0.11 12.8 1.1 2.8 2 2 1 3 3 3 0 Actinobacteria/chloroflexi VLRF1 release factor Auto_anti-p27 PF06677.12 gi|344212469|ref|YP_004796789.1| - 1.2 9.3 2.8 2 8.6 2.8 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GHMP_kinases_N PF00288.26 gi|344212470|ref|YP_004796790.1| - 3.2e-08 33.7 4.8 3.2e-08 33.7 4.8 2.4 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|344212470|ref|YP_004796790.1| - 0.0028 18.0 0.8 0.024 15.0 0.0 2.7 3 0 0 3 3 3 1 GHMP kinases C terminal DUF2505 PF10698.9 gi|344212470|ref|YP_004796790.1| - 0.081 13.0 0.6 0.14 12.2 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2505) UPF0175 PF03683.13 gi|344212471|ref|YP_004796791.1| - 7.5e-10 38.4 1.8 1e-09 37.9 1.8 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.21 gi|344212471|ref|YP_004796791.1| - 0.019 14.9 1.2 0.019 14.9 1.2 2.4 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family HTH_psq PF05225.16 gi|344212471|ref|YP_004796791.1| - 0.12 12.1 1.5 0.44 10.3 0.5 2.0 1 1 1 2 2 2 0 helix-turn-helix, Psq domain NYN_YacP PF05991.11 gi|344212472|ref|YP_004796792.1| - 0.023 14.6 0.1 0.031 14.2 0.1 1.2 1 0 0 1 1 1 0 YacP-like NYN domain PIN_4 PF13638.6 gi|344212472|ref|YP_004796792.1| - 0.028 14.7 0.3 1.1 9.6 0.3 2.1 1 1 0 1 1 1 0 PIN domain Prefoldin_2 PF01920.20 gi|344212473|ref|YP_004796793.1| - 2.6e-27 94.9 23.3 2.9e-27 94.7 23.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit CLZ PF16526.5 gi|344212473|ref|YP_004796793.1| - 0.00037 20.8 4.1 0.00037 20.8 4.1 2.3 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FlaC_arch PF05377.11 gi|344212473|ref|YP_004796793.1| - 0.00039 20.7 5.9 0.00039 20.7 5.9 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) XhlA PF10779.9 gi|344212473|ref|YP_004796793.1| - 0.0025 18.0 1.4 0.0025 18.0 1.4 2.3 2 1 0 2 2 2 1 Haemolysin XhlA ERM PF00769.19 gi|344212473|ref|YP_004796793.1| - 0.0031 17.4 18.1 0.005 16.7 18.1 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family DUF5082 PF16888.5 gi|344212473|ref|YP_004796793.1| - 0.0037 17.5 11.9 0.0049 17.1 11.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) DUF3584 PF12128.8 gi|344212473|ref|YP_004796793.1| - 0.006 14.2 11.8 0.0073 13.9 11.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) ALIX_LYPXL_bnd PF13949.6 gi|344212473|ref|YP_004796793.1| - 0.0064 15.8 9.8 0.008 15.5 9.8 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV TPR_MLP1_2 PF07926.12 gi|344212473|ref|YP_004796793.1| - 0.012 15.7 23.9 0.02 14.9 23.9 1.3 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|344212473|ref|YP_004796793.1| - 0.017 15.8 0.1 0.017 15.8 0.1 2.3 2 0 0 2 2 2 0 SlyX Leu_zip PF15294.6 gi|344212473|ref|YP_004796793.1| - 0.017 14.7 13.1 0.019 14.5 13.1 1.0 1 0 0 1 1 1 0 Leucine zipper BLOC1_2 PF10046.9 gi|344212473|ref|YP_004796793.1| - 0.017 15.4 12.7 0.18 12.1 1.5 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4988 PF16378.5 gi|344212473|ref|YP_004796793.1| - 0.026 14.2 0.9 0.026 14.2 0.9 1.9 2 0 0 2 2 2 0 Domain of unknown function FlgN PF05130.12 gi|344212473|ref|YP_004796793.1| - 0.047 14.2 10.5 0.065 13.7 10.5 1.2 1 0 0 1 1 1 0 FlgN protein DUF724 PF05266.14 gi|344212473|ref|YP_004796793.1| - 0.048 13.5 13.5 0.057 13.2 13.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF724) bZIP_1 PF00170.21 gi|344212473|ref|YP_004796793.1| - 0.054 13.6 3.5 0.054 13.6 3.5 2.2 2 0 0 2 2 2 0 bZIP transcription factor Prefoldin PF02996.17 gi|344212473|ref|YP_004796793.1| - 0.061 13.2 19.6 2.3 8.1 19.6 2.5 1 1 0 1 1 1 0 Prefoldin subunit EzrA PF06160.12 gi|344212473|ref|YP_004796793.1| - 0.088 11.0 16.2 0.13 10.4 16.2 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA BRI3BP PF14965.6 gi|344212473|ref|YP_004796793.1| - 0.1 12.1 0.3 0.16 11.5 0.3 1.3 1 0 0 1 1 1 0 Negative regulator of p53/TP53 RasGAP_C PF03836.15 gi|344212473|ref|YP_004796793.1| - 0.15 12.2 7.3 3 8.0 0.3 2.1 2 0 0 2 2 2 0 RasGAP C-terminus GCN5L1 PF06320.13 gi|344212473|ref|YP_004796793.1| - 0.18 11.9 14.0 0.31 11.2 3.7 2.1 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Baculo_PEP_C PF04513.12 gi|344212473|ref|YP_004796793.1| - 0.2 11.7 9.9 0.34 10.9 9.9 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus WXG100 PF06013.12 gi|344212473|ref|YP_004796793.1| - 0.24 11.7 15.1 1.7 9.0 5.9 2.9 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Spc24 PF08286.11 gi|344212473|ref|YP_004796793.1| - 0.25 11.6 20.4 0.4 10.9 5.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 CENP-F_leu_zip PF10473.9 gi|344212473|ref|YP_004796793.1| - 0.27 11.3 23.6 2.1 8.3 8.1 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Cep57_CLD PF14073.6 gi|344212473|ref|YP_004796793.1| - 0.27 11.2 17.7 1.3 9.0 6.3 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 TraF_2 PF13729.6 gi|344212473|ref|YP_004796793.1| - 0.29 10.5 9.6 0.86 8.9 4.7 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein ZapB PF06005.12 gi|344212473|ref|YP_004796793.1| - 0.3 11.6 19.8 0.43 11.1 6.4 2.2 2 0 0 2 2 2 0 Cell division protein ZapB Laminin_I PF06008.14 gi|344212473|ref|YP_004796793.1| - 0.39 10.4 19.1 0.56 9.9 4.4 2.1 1 1 1 2 2 2 0 Laminin Domain I Seryl_tRNA_N PF02403.22 gi|344212473|ref|YP_004796793.1| - 0.41 10.9 16.4 0.42 10.9 3.0 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain ING PF12998.7 gi|344212473|ref|YP_004796793.1| - 0.49 11.0 10.2 1.4 9.5 9.7 2.1 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding PRP1_N PF06424.12 gi|344212473|ref|YP_004796793.1| - 0.54 10.6 10.9 0.77 10.1 10.9 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Sigma70_ner PF04546.13 gi|344212473|ref|YP_004796793.1| - 0.57 10.0 16.5 0.29 11.0 4.3 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region MutS_III PF05192.18 gi|344212473|ref|YP_004796793.1| - 0.61 10.3 6.1 0.76 10.0 6.1 1.1 1 0 0 1 1 1 0 MutS domain III FAM184 PF15665.5 gi|344212473|ref|YP_004796793.1| - 0.62 9.8 20.2 0.85 9.4 20.2 1.1 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B Exonuc_VII_L PF02601.15 gi|344212473|ref|YP_004796793.1| - 0.67 9.5 8.0 0.85 9.1 8.0 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit FUSC PF04632.12 gi|344212473|ref|YP_004796793.1| - 0.8 8.2 5.1 1 7.8 5.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1664 PF07889.12 gi|344212473|ref|YP_004796793.1| - 0.86 9.6 12.4 0.57 10.2 2.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|344212473|ref|YP_004796793.1| - 0.86 9.6 11.9 1.6 8.8 11.9 1.5 1 1 0 1 1 1 0 Laminin Domain II Sec8_exocyst PF04048.14 gi|344212473|ref|YP_004796793.1| - 0.93 9.4 8.9 0.41 10.5 3.6 2.0 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain DUF1826 PF08856.11 gi|344212473|ref|YP_004796793.1| - 1.4 8.8 5.1 1.4 8.8 4.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1826) DUF4164 PF13747.6 gi|344212473|ref|YP_004796793.1| - 1.5 9.1 13.6 0.1 12.9 1.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) JIP_LZII PF16471.5 gi|344212473|ref|YP_004796793.1| - 1.6 8.9 13.3 1 9.5 4.5 2.4 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II NPV_P10 PF05531.12 gi|344212473|ref|YP_004796793.1| - 1.7 9.2 10.6 1.8 9.1 1.4 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein HemX PF04375.14 gi|344212473|ref|YP_004796793.1| - 1.7 7.8 22.3 20 4.3 22.3 1.9 1 1 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase APG6_N PF17675.1 gi|344212473|ref|YP_004796793.1| - 1.8 9.1 31.7 2.4 8.7 13.1 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Fzo_mitofusin PF04799.13 gi|344212473|ref|YP_004796793.1| - 1.8 8.1 14.1 2.4 7.7 3.7 2.1 1 1 1 2 2 2 0 fzo-like conserved region Bac_GDH PF05088.12 gi|344212473|ref|YP_004796793.1| - 2 5.8 7.0 2.4 5.5 7.0 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase eIF3_N PF09440.10 gi|344212473|ref|YP_004796793.1| - 2 8.9 15.6 0.3 11.5 4.4 2.0 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain DUF4407 PF14362.6 gi|344212473|ref|YP_004796793.1| - 2.1 7.7 14.0 0.41 10.0 0.6 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Tropomyosin_1 PF12718.7 gi|344212473|ref|YP_004796793.1| - 2.3 8.3 24.9 7 6.8 24.3 1.8 1 1 0 1 1 1 0 Tropomyosin like Syntaxin-6_N PF09177.11 gi|344212473|ref|YP_004796793.1| - 2.4 8.7 13.8 1.9e+02 2.7 14.2 2.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Spc7 PF08317.11 gi|344212473|ref|YP_004796793.1| - 2.6 6.8 21.9 11 4.7 22.0 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|344212473|ref|YP_004796793.1| - 2.8 8.1 12.8 28 4.9 12.8 2.0 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Com_YlbF PF06133.11 gi|344212473|ref|YP_004796793.1| - 2.9 8.6 23.3 0.33 11.6 9.7 2.1 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA LMBR1 PF04791.16 gi|344212473|ref|YP_004796793.1| - 2.9 6.7 7.5 3.6 6.4 7.5 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Vps51 PF08700.11 gi|344212473|ref|YP_004796793.1| - 2.9 8.0 12.6 0.45 10.6 1.2 2.2 2 0 0 2 2 2 0 Vps51/Vps67 DUF3376 PF11856.8 gi|344212473|ref|YP_004796793.1| - 3.6 6.5 8.2 4.4 6.2 8.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3376) GIT_CC PF16559.5 gi|344212473|ref|YP_004796793.1| - 3.7 7.5 17.3 0.083 12.8 3.0 2.5 2 1 1 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF3450 PF11932.8 gi|344212473|ref|YP_004796793.1| - 4.1 6.6 24.0 22 4.2 24.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) V-SNARE PF05008.15 gi|344212473|ref|YP_004796793.1| - 4.1 7.9 18.0 4 7.9 6.0 2.3 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF4446 PF14584.6 gi|344212473|ref|YP_004796793.1| - 4.1 7.4 11.8 0.69 9.9 2.5 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) Sec34 PF04136.15 gi|344212473|ref|YP_004796793.1| - 4.5 7.2 14.9 1.5 8.7 2.6 2.1 1 1 1 2 2 2 0 Sec34-like family Occludin_ELL PF07303.13 gi|344212473|ref|YP_004796793.1| - 4.6 8.0 12.1 6.4 7.6 2.1 2.1 1 1 1 2 2 2 0 Occludin homology domain OmpH PF03938.14 gi|344212473|ref|YP_004796793.1| - 5.3 7.4 28.8 2 8.7 8.4 2.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF4795 PF16043.5 gi|344212473|ref|YP_004796793.1| - 6.3 6.3 19.6 37 3.8 19.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) TssO PF17561.2 gi|344212473|ref|YP_004796793.1| - 6.3 6.9 11.0 0.46 10.6 2.0 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssO DUF4200 PF13863.6 gi|344212473|ref|YP_004796793.1| - 6.4 7.2 24.5 2.3 8.6 9.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF2408 PF10303.9 gi|344212473|ref|YP_004796793.1| - 6.4 7.3 11.7 17 6.0 11.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) HMMR_N PF15905.5 gi|344212473|ref|YP_004796793.1| - 7 6.0 23.7 13 5.1 23.7 1.4 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Herpes_UL6 PF01763.16 gi|344212473|ref|YP_004796793.1| - 7.2 5.0 13.9 3.1 6.2 2.8 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like FapA PF03961.13 gi|344212473|ref|YP_004796793.1| - 8.3 4.9 11.2 16 3.9 11.2 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A DUF4657 PF15552.6 gi|344212473|ref|YP_004796793.1| - 8.4 5.9 11.9 9.9 5.6 11.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) AAA_13 PF13166.6 gi|344212473|ref|YP_004796793.1| - 9.2 4.8 14.2 19 3.7 11.3 1.6 1 1 0 1 1 1 0 AAA domain DHR10 PF18595.1 gi|344212473|ref|YP_004796793.1| - 9.6 6.3 26.6 1.3 9.1 9.4 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain TMF_TATA_bd PF12325.8 gi|344212473|ref|YP_004796793.1| - 9.8 6.4 22.2 2e+02 2.2 22.3 2.1 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding GAS PF13851.6 gi|344212473|ref|YP_004796793.1| - 9.9 5.4 22.3 45 3.3 22.3 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF3194 PF11419.8 gi|344212474|ref|YP_004796794.1| - 0.0011 19.3 4.5 0.0014 18.9 4.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) MucB_RseB_C PF17188.4 gi|344212474|ref|YP_004796794.1| - 0.099 12.9 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 MucB/RseB C-terminal domain Presenilin PF01080.17 gi|344212476|ref|YP_004796796.1| - 0.52 9.0 4.2 0.67 8.7 4.2 1.1 1 0 0 1 1 1 0 Presenilin PepSY_TM PF03929.16 gi|344212476|ref|YP_004796796.1| - 0.62 9.7 3.2 0.96 9.0 3.2 1.5 1 1 0 1 1 1 0 PepSY-associated TM region CPSF100_C PF13299.6 gi|344212476|ref|YP_004796796.1| - 2.4 8.3 8.4 13 6.0 4.2 2.1 2 0 0 2 2 2 0 Cleavage and polyadenylation factor 2 C-terminal DNase-RNase PF02577.14 gi|344212477|ref|YP_004796797.1| - 5.5e-38 129.5 0.0 6e-38 129.4 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HAD_2 PF13419.6 gi|344212478|ref|YP_004796798.1| - 1.2e-19 71.1 0.0 1.5e-19 70.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344212478|ref|YP_004796798.1| - 7e-10 38.8 0.1 1.4e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|344212478|ref|YP_004796798.1| - 1.2e-07 32.2 0.0 1.6e-06 28.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344212478|ref|YP_004796798.1| - 0.0016 18.9 0.9 0.0032 17.9 0.9 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase BAT PF15915.5 gi|344212479|ref|YP_004796799.1| - 2.4e-30 105.5 7.7 2.4e-30 105.5 7.7 3.5 4 1 0 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|344212479|ref|YP_004796799.1| - 9.1e-20 71.4 6.2 6.9e-16 58.8 0.5 2.6 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.12 gi|344212479|ref|YP_004796799.1| - 1.9e-19 69.2 0.0 3.9e-19 68.2 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|344212479|ref|YP_004796799.1| - 2.5e-18 66.2 0.0 3.4e-08 33.7 0.1 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|344212479|ref|YP_004796799.1| - 2.3e-13 50.1 0.1 1.6e-08 34.6 0.1 3.1 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|344212479|ref|YP_004796799.1| - 1.3e-11 44.7 9.1 7.1e-06 26.2 0.1 4.7 4 1 0 4 4 3 2 PAS fold PAS_8 PF13188.7 gi|344212479|ref|YP_004796799.1| - 1.3e-07 31.5 0.1 0.0014 18.6 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 gi|344212479|ref|YP_004796799.1| - 2.8e-05 24.5 0.6 0.0017 18.7 0.0 2.6 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|344212479|ref|YP_004796799.1| - 0.0004 19.8 0.1 0.0013 18.2 0.1 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|344212479|ref|YP_004796799.1| - 0.0013 18.6 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GAF PF01590.26 gi|344212479|ref|YP_004796799.1| - 0.0061 17.2 0.1 0.032 14.9 0.0 2.3 2 0 0 2 2 2 1 GAF domain GerE PF00196.19 gi|344212479|ref|YP_004796799.1| - 0.009 15.5 0.0 0.059 12.9 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family PAS_3 PF08447.12 gi|344212479|ref|YP_004796799.1| - 0.023 15.0 0.0 0.14 12.5 0.0 2.4 2 0 0 2 2 1 0 PAS fold HTH_24 PF13412.6 gi|344212479|ref|YP_004796799.1| - 0.024 14.2 0.0 0.077 12.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MAT1 PF06391.13 gi|344212479|ref|YP_004796799.1| - 0.064 13.1 4.5 0.12 12.2 0.1 2.4 2 0 0 2 2 2 0 CDK-activating kinase assembly factor MAT1 Sigma70_r4_2 PF08281.12 gi|344212479|ref|YP_004796799.1| - 0.082 12.6 0.3 0.43 10.3 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|344212479|ref|YP_004796799.1| - 0.17 12.0 0.0 0.64 10.1 0.0 2.1 1 0 0 1 1 1 0 HTH domain L31 PF09784.9 gi|344212479|ref|YP_004796799.1| - 0.2 12.1 0.6 17 5.9 0.5 2.6 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L31 DUF4078 PF13300.6 gi|344212479|ref|YP_004796799.1| - 0.42 10.9 8.6 0.095 13.0 3.1 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4078) HalOD1 PF18545.1 gi|344212480|ref|YP_004796800.1| - 2e-22 79.2 0.1 2.4e-22 79.0 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Terpene_synth_C PF03936.16 gi|344212481|ref|YP_004796801.1| - 0.03 13.7 0.0 0.09 12.1 0.0 1.7 1 1 0 1 1 1 0 Terpene synthase family, metal binding domain HMGL-like PF00682.19 gi|344212482|ref|YP_004796802.1| - 4.9e-65 219.7 0.3 1e-64 218.7 0.3 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|344212482|ref|YP_004796802.1| - 2.7e-30 105.0 3.1 6.5e-30 103.8 3.1 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain F_bP_aldolase PF01116.20 gi|344212482|ref|YP_004796802.1| - 0.013 14.9 0.2 0.095 12.2 0.0 2.1 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II GDPD_2 PF13653.6 gi|344212482|ref|YP_004796802.1| - 2.2 8.9 4.9 50 4.5 0.1 3.8 4 0 0 4 4 4 0 Glycerophosphoryl diester phosphodiesterase family DUF192 PF02643.15 gi|344212483|ref|YP_004796803.1| - 2e-22 79.1 0.0 2.3e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 RecA_dep_nuc PF16786.5 gi|344212484|ref|YP_004796804.1| - 0.046 13.9 0.5 0.077 13.1 0.5 1.4 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease DUF2387 PF09526.10 gi|344212484|ref|YP_004796804.1| - 0.058 13.5 0.2 0.14 12.3 0.2 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) HNH PF01844.23 gi|344212484|ref|YP_004796804.1| - 0.058 13.6 2.1 0.13 12.4 2.1 1.6 1 0 0 1 1 1 0 HNH endonuclease HisKA_4TM PF16926.5 gi|344212485|ref|YP_004796805.1| - 3.5e-10 39.7 1.4 5.3e-10 39.1 0.6 1.7 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|344212485|ref|YP_004796805.1| - 6.1e-06 26.7 0.0 1.3e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|344212485|ref|YP_004796805.1| - 1.2e-05 25.1 0.0 2.1e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|344212485|ref|YP_004796805.1| - 0.0031 17.5 0.3 0.0059 16.6 0.3 1.4 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DPBB_1 PF03330.18 gi|344212485|ref|YP_004796805.1| - 0.12 12.6 0.1 0.24 11.7 0.1 1.4 1 0 0 1 1 1 0 Lytic transglycolase HATPase_c_2 PF13581.6 gi|344212485|ref|YP_004796805.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain GATase PF00117.28 gi|344212486|ref|YP_004796806.1| - 4.8e-36 124.3 0.0 5.4e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344212486|ref|YP_004796806.1| - 1.1e-14 54.7 1.7 7.6e-13 48.7 0.3 2.9 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|344212486|ref|YP_004796806.1| - 0.15 11.7 0.6 2.3 7.8 0.6 2.1 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF2070 PF09843.9 gi|344212487|ref|YP_004796807.1| - 1e-208 694.2 0.0 1.2e-208 694.0 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF3087 PF11286.8 gi|344212487|ref|YP_004796807.1| - 1.3 8.5 9.3 0.16 11.4 3.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) PsaM PF07465.13 gi|344212487|ref|YP_004796807.1| - 1.6 8.5 12.0 3.3 7.5 0.6 3.7 3 0 0 3 3 3 0 Photosystem I protein M (PsaM) AAA_3 PF07726.11 gi|344212488|ref|YP_004796808.1| - 8.6e-66 219.7 0.1 1.4e-65 219.0 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|344212488|ref|YP_004796808.1| - 1.2e-19 69.9 1.6 2.5e-19 68.9 1.6 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|344212488|ref|YP_004796808.1| - 1.4e-15 57.5 0.0 5.6e-15 55.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|344212488|ref|YP_004796808.1| - 3.8e-07 30.6 0.0 1.6e-06 28.6 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|344212488|ref|YP_004796808.1| - 8.9e-05 22.2 0.0 0.00064 19.5 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|344212488|ref|YP_004796808.1| - 0.001 18.9 0.0 0.018 14.8 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|344212488|ref|YP_004796808.1| - 0.0011 18.3 0.1 1.6 8.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|344212488|ref|YP_004796808.1| - 0.0059 15.7 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain DUF3071 PF11268.8 gi|344212488|ref|YP_004796808.1| - 0.023 14.8 0.5 0.054 13.6 0.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3071) AAA_2 PF07724.14 gi|344212488|ref|YP_004796808.1| - 0.065 13.3 0.0 0.34 11.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) GtrA PF04138.14 gi|344212489|ref|YP_004796809.1| - 3.9e-21 75.5 5.5 4.5e-21 75.3 5.5 1.0 1 0 0 1 1 1 1 GtrA-like protein Sulfatase PF00884.23 gi|344212490|ref|YP_004796810.1| - 2.9e-34 118.9 0.0 3.8e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344212490|ref|YP_004796810.1| - 6.3e-08 32.6 0.2 3.3e-05 23.7 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|344212490|ref|YP_004796810.1| - 0.0097 16.2 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF1501 PF07394.12 gi|344212490|ref|YP_004796810.1| - 0.024 13.7 0.1 0.043 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Acetyltransf_10 PF13673.7 gi|344212491|ref|YP_004796811.1| - 1e-11 44.8 0.1 1.4e-11 44.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344212491|ref|YP_004796811.1| - 1.7e-11 44.4 0.0 1.9e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344212491|ref|YP_004796811.1| - 6e-08 33.0 0.0 7.5e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344212491|ref|YP_004796811.1| - 7.1e-08 32.3 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|344212491|ref|YP_004796811.1| - 0.0047 17.1 0.0 0.0066 16.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344212491|ref|YP_004796811.1| - 0.0048 17.0 0.1 0.01 15.9 0.1 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain AHJR-like PF18743.1 gi|344212491|ref|YP_004796811.1| - 0.098 12.2 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 REase_AHJR-like ABC1 PF03109.16 gi|344212492|ref|YP_004796812.1| - 1.9e-27 95.8 0.0 4.5e-27 94.6 0.0 1.6 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|344212492|ref|YP_004796812.1| - 0.0013 18.2 0.0 0.0029 17.0 0.0 1.5 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|344212492|ref|YP_004796812.1| - 0.0045 16.9 0.3 0.022 14.7 0.2 2.2 2 1 0 2 2 2 1 Phosphotransferase enzyme family HSP20 PF00011.21 gi|344212493|ref|YP_004796813.1| - 2.4e-11 43.7 0.0 2.7e-11 43.5 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|344212493|ref|YP_004796813.1| - 3.5e-05 23.3 0.5 0.00013 21.5 0.5 1.9 1 1 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|344212493|ref|YP_004796813.1| - 7.5e-05 22.9 0.3 0.0015 18.6 0.3 2.0 2 0 0 2 2 2 1 GvpH CysA_C_terminal PF17850.1 gi|344212493|ref|YP_004796813.1| - 0.012 16.2 1.8 1.4 9.5 0.1 3.1 1 1 2 3 3 3 0 CysA C-terminal regulatory domain TubC_N PF18563.1 gi|344212493|ref|YP_004796813.1| - 0.2 11.7 0.0 6.8 6.8 0.0 2.3 2 0 0 2 2 2 0 TubC N-terminal docking domain GIDE PF12483.8 gi|344212494|ref|YP_004796814.1| - 3.7e-07 29.7 0.6 3.3e-06 26.6 0.6 2.4 1 1 0 1 1 1 1 E3 Ubiquitin ligase MoCF_biosynth PF00994.24 gi|344212495|ref|YP_004796815.1| - 4.5e-08 32.9 0.1 6.6e-08 32.3 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|344212495|ref|YP_004796815.1| - 9.8e-06 25.7 0.0 2.1e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|344212495|ref|YP_004796815.1| - 0.00013 21.8 0.1 0.19 11.5 0.1 2.7 1 1 1 2 2 2 2 MoeA N-terminal region (domain I and II) HAD_2 PF13419.6 gi|344212496|ref|YP_004796816.1| - 9.5e-19 68.2 0.0 1.2e-18 67.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344212496|ref|YP_004796816.1| - 3.7e-08 34.0 0.5 5.2e-08 33.5 0.5 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344212496|ref|YP_004796816.1| - 8.2e-08 32.8 0.0 7.1e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344212496|ref|YP_004796816.1| - 0.044 13.8 0.0 0.099 12.7 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like Pterin_4a PF01329.19 gi|344212498|ref|YP_004796818.1| - 9.3e-26 89.8 0.0 1e-25 89.7 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.8 gi|344212498|ref|YP_004796818.1| - 0.027 14.6 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 Translation-initiation factor 2 GlutR_N PF05201.15 gi|344212499|ref|YP_004796819.1| - 7.3e-34 116.6 0.9 1.1e-33 116.1 0.1 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|344212499|ref|YP_004796819.1| - 3.1e-25 88.8 1.5 4.6e-25 88.3 0.1 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|344212499|ref|YP_004796819.1| - 2e-20 73.0 1.6 4.2e-20 72.0 1.6 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Glu_dehyd_C PF16912.5 gi|344212499|ref|YP_004796819.1| - 8.3e-07 28.7 2.0 8.3e-07 28.7 2.0 1.7 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus NAD_binding_2 PF03446.15 gi|344212499|ref|YP_004796819.1| - 0.00033 20.8 2.9 0.00087 19.5 0.1 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase zf-C4H2 PF10146.9 gi|344212499|ref|YP_004796819.1| - 0.0022 18.4 0.2 0.0044 17.3 0.2 1.5 1 0 0 1 1 1 1 Zinc finger-containing protein DUF4476 PF14771.6 gi|344212499|ref|YP_004796819.1| - 0.0081 16.4 0.2 0.016 15.5 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4476) Sacchrp_dh_NADP PF03435.18 gi|344212499|ref|YP_004796819.1| - 0.019 15.2 0.5 0.019 15.2 0.5 2.6 2 1 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain DNA_gyraseB PF00204.25 gi|344212499|ref|YP_004796819.1| - 0.08 12.4 1.0 0.18 11.2 1.0 1.6 1 0 0 1 1 1 0 DNA gyrase B TrkA_N PF02254.18 gi|344212499|ref|YP_004796819.1| - 1.1 9.6 6.7 0.59 10.4 1.3 2.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|344212499|ref|YP_004796819.1| - 3.3 8.2 5.1 0.53 10.8 0.3 2.1 3 0 0 3 3 3 0 Putative NAD(P)-binding NAD_binding_7 PF13241.6 gi|344212500|ref|YP_004796820.1| - 5.7e-23 81.3 0.1 8.3e-23 80.8 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|344212500|ref|YP_004796820.1| - 0.00011 21.5 0.0 0.00019 20.8 0.0 1.4 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Oxidored_nitro PF00148.19 gi|344212500|ref|YP_004796820.1| - 0.026 13.2 0.1 0.033 12.9 0.1 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase CysG_dimeriser PF10414.9 gi|344212500|ref|YP_004796820.1| - 0.27 11.0 3.5 0.15 11.8 0.5 2.2 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region AsnC_trans_reg2 PF17805.1 gi|344212501|ref|YP_004796821.1| - 2.4e-50 168.6 0.2 5e-25 87.5 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain DZR PF12773.7 gi|344212502|ref|YP_004796822.1| - 0.0062 16.5 1.0 0.0087 16.1 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|344212502|ref|YP_004796822.1| - 0.0066 17.2 0.0 0.0071 17.1 0.0 1.2 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|344212502|ref|YP_004796822.1| - 0.041 13.6 2.7 0.057 13.1 2.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|344212502|ref|YP_004796822.1| - 0.089 12.2 1.6 0.14 11.6 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CSD PF00313.22 gi|344212504|ref|YP_004796824.1| - 8e-21 73.7 0.1 8.9e-21 73.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|344212504|ref|YP_004796824.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|344212504|ref|YP_004796824.1| - 0.017 15.1 1.7 0.025 14.5 1.7 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|344212504|ref|YP_004796824.1| - 0.018 14.7 2.5 0.028 14.1 2.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.22 gi|344212505|ref|YP_004796825.1| - 1.7e-21 75.8 0.1 1.9e-21 75.7 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|344212505|ref|YP_004796825.1| - 0.0019 18.0 0.0 0.0021 17.9 0.0 1.1 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|344212505|ref|YP_004796825.1| - 0.023 14.6 3.4 0.051 13.5 3.4 1.6 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.8 gi|344212505|ref|YP_004796825.1| - 0.043 13.8 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.11 gi|344212505|ref|YP_004796825.1| - 0.054 13.2 2.6 0.058 13.1 2.6 1.4 1 1 0 1 1 1 0 Ribonuclease B OB domain Prenyltransf PF01255.19 gi|344212506|ref|YP_004796826.1| - 2.2e-67 226.9 0.0 2.7e-67 226.6 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|344212507|ref|YP_004796827.1| - 1.2e-25 90.4 0.0 3.7e-25 88.8 0.0 1.7 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase SbcD_C PF12320.8 gi|344212507|ref|YP_004796827.1| - 0.092 13.0 0.1 0.13 12.6 0.1 1.5 1 0 0 1 1 1 0 Type 5 capsule protein repressor C-terminal domain DUF92 PF01940.16 gi|344212508|ref|YP_004796828.1| - 1.2e-49 168.9 14.6 1.2e-49 168.9 14.6 3.3 3 2 0 3 3 3 1 Integral membrane protein DUF92 Acetyltransf_1 PF00583.25 gi|344212509|ref|YP_004796829.1| - 6.1e-14 52.3 0.0 6.9e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344212509|ref|YP_004796829.1| - 1e-09 38.4 0.0 1.2e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344212509|ref|YP_004796829.1| - 1.2e-07 32.0 0.0 1.6e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344212509|ref|YP_004796829.1| - 4.1e-05 23.5 0.0 7e-05 22.7 0.0 1.4 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|344212509|ref|YP_004796829.1| - 0.00042 20.4 0.1 0.0007 19.7 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Toprim_4 PF13662.6 gi|344212510|ref|YP_004796830.1| - 3e-11 43.7 0.7 2.2e-10 40.8 0.2 2.4 2 0 0 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|344212510|ref|YP_004796830.1| - 1.3e-05 25.6 0.0 3.2e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|344212510|ref|YP_004796830.1| - 0.063 13.5 0.4 0.87 9.8 0.4 2.6 1 1 0 1 1 1 0 Toprim domain ADH_zinc_N PF00107.26 gi|344212510|ref|YP_004796830.1| - 0.46 10.5 3.5 9.3 6.3 0.1 2.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase AP_endonuc_2 PF01261.24 gi|344212511|ref|YP_004796831.1| - 8.1e-14 51.6 1.2 8.5e-13 48.2 0.9 2.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel tRNA_bind PF01588.20 gi|344212512|ref|YP_004796832.1| - 1.4e-19 70.0 0.0 1.6e-19 69.8 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3311 PF11755.8 gi|344212513|ref|YP_004796833.1| - 5.1e-15 55.2 16.9 5.6e-15 55.0 16.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) GTA_holin_3TM PF11351.8 gi|344212513|ref|YP_004796833.1| - 5.3 7.6 9.1 6.4 7.3 9.1 1.1 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release SSF PF00474.17 gi|344212514|ref|YP_004796834.1| - 2.4e-39 135.4 27.1 3.5e-39 134.8 27.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2892 PF11127.8 gi|344212515|ref|YP_004796835.1| - 9.4e-10 38.4 0.0 1.2e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF3567 PF12091.8 gi|344212516|ref|YP_004796836.1| - 0.035 14.2 0.1 0.1 12.7 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) tRNA-synt_1 PF00133.22 gi|344212517|ref|YP_004796837.1| - 6.4e-128 427.6 0.2 1.4e-126 423.2 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|344212517|ref|YP_004796837.1| - 4.2e-36 124.2 0.0 1e-35 122.9 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|344212517|ref|YP_004796837.1| - 3.1e-20 72.3 0.1 1.2e-09 37.4 0.0 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|344212517|ref|YP_004796837.1| - 3.6e-06 26.6 0.0 8.6e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|344212517|ref|YP_004796837.1| - 8.4e-05 21.6 0.0 0.0027 16.7 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.7 gi|344212517|ref|YP_004796837.1| - 0.00068 19.6 0.3 0.022 14.8 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon tRNA-synt_1e PF01406.19 gi|344212517|ref|YP_004796837.1| - 0.00069 19.1 0.0 0.26 10.6 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Zn-ribbon_8 PF09723.10 gi|344212517|ref|YP_004796837.1| - 0.0012 19.0 2.4 0.029 14.5 0.6 2.8 2 0 0 2 2 2 1 Zinc ribbon domain zf-dskA_traR PF01258.17 gi|344212517|ref|YP_004796837.1| - 0.014 15.3 0.2 0.014 15.3 0.2 2.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.6 gi|344212517|ref|YP_004796837.1| - 0.018 15.4 2.0 17 5.9 0.0 3.7 3 0 0 3 3 3 0 Restriction alleviation protein Lar Apolipoprotein PF01442.18 gi|344212517|ref|YP_004796837.1| - 0.083 12.8 0.2 0.083 12.8 0.2 2.3 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain HypA PF01155.19 gi|344212517|ref|YP_004796837.1| - 0.14 12.2 0.1 3.9 7.5 0.0 2.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|344212517|ref|YP_004796837.1| - 0.48 9.9 3.8 1.4 8.4 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Bap31_Bap29_C PF18035.1 gi|344212518|ref|YP_004796838.1| - 0.064 13.3 0.3 0.091 12.8 0.2 1.5 1 1 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF1405 PF07187.11 gi|344212519|ref|YP_004796839.1| - 1.4e-48 164.8 12.7 1.7e-48 164.6 12.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) SOR_SNZ PF01680.17 gi|344212520|ref|YP_004796840.1| - 1.3e-96 322.3 6.7 1.7e-96 321.9 6.7 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|344212520|ref|YP_004796840.1| - 1.2e-11 44.4 2.2 3.2e-06 26.7 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG OMPdecase PF00215.24 gi|344212520|ref|YP_004796840.1| - 0.0012 18.5 0.4 1.4 8.4 0.0 2.7 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|344212520|ref|YP_004796840.1| - 0.0048 16.1 0.1 0.27 10.4 0.0 2.3 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|344212520|ref|YP_004796840.1| - 0.011 14.9 0.4 0.38 9.9 0.0 2.4 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase MS_channel PF00924.18 gi|344212521|ref|YP_004796841.1| - 1.9e-48 164.8 0.0 4.3e-48 163.6 0.0 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel UPF0182 PF03699.13 gi|344212521|ref|YP_004796841.1| - 7.5 4.5 10.3 1.4 7.0 1.3 2.0 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0182) DUF2150 PF09920.9 gi|344212523|ref|YP_004796843.1| - 4.9e-72 241.9 6.7 5.6e-72 241.7 6.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.16 gi|344212524|ref|YP_004796844.1| - 1.4e-06 28.2 4.2 1.4e-06 28.2 4.2 5.3 6 0 0 6 6 6 1 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|344212524|ref|YP_004796844.1| - 0.0043 17.2 1.8 0.017 15.3 0.2 2.9 3 0 0 3 3 3 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|344212524|ref|YP_004796844.1| - 0.01 16.1 4.5 0.01 16.1 4.5 4.0 5 0 0 5 5 5 0 Invasin, domain 3 PKD PF00801.20 gi|344212524|ref|YP_004796844.1| - 0.025 14.4 1.3 0.025 14.4 1.3 4.0 4 1 1 5 5 5 0 PKD domain DUF824 PF05688.11 gi|344212524|ref|YP_004796844.1| - 0.1 12.5 7.7 3.7 7.4 0.1 4.6 5 0 0 5 5 5 0 Salmonella repeat of unknown function (DUF824) CAP PF00188.26 gi|344212525|ref|YP_004796845.1| - 0.00023 22.0 0.1 0.00041 21.2 0.1 1.5 1 0 0 1 1 1 1 Cysteine-rich secretory protein family CCD PF07860.11 gi|344212526|ref|YP_004796846.1| - 0.041 13.9 1.1 0.084 12.9 1.1 1.5 1 0 0 1 1 1 0 WisP family C-Terminal Region EBP50_C PF09007.11 gi|344212526|ref|YP_004796846.1| - 0.43 11.6 7.1 0.74 10.8 7.1 1.4 1 0 0 1 1 1 0 EBP50, C-terminal HMG_CoA_synt_N PF01154.17 gi|344212527|ref|YP_004796847.1| - 2.5e-26 92.6 0.0 3.7e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|344212527|ref|YP_004796847.1| - 1.7e-15 57.4 0.0 4.1e-15 56.2 0.0 1.5 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal GrpB PF04229.14 gi|344212528|ref|YP_004796848.1| - 1.5e-47 161.7 0.0 1.7e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 GrpB protein Glyco_transf_34 PF05637.12 gi|344212528|ref|YP_004796848.1| - 0.095 12.4 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 galactosyl transferase GMA12/MNN10 family HTH_31 PF13560.6 gi|344212529|ref|YP_004796849.1| - 3.8e-09 36.8 0.1 2.6e-08 34.1 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|344212529|ref|YP_004796849.1| - 2.2e-08 34.0 0.0 4.6e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|344212529|ref|YP_004796849.1| - 4.9e-05 23.3 0.0 0.00021 21.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344212529|ref|YP_004796849.1| - 0.026 14.4 0.0 0.059 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family IspD PF01128.19 gi|344212529|ref|YP_004796849.1| - 0.051 13.3 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Phage_CI_repr PF07022.13 gi|344212529|ref|YP_004796849.1| - 0.13 12.3 0.0 0.79 9.9 0.0 2.1 2 1 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|344212529|ref|YP_004796849.1| - 0.15 12.0 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Pilin_N PF07790.11 gi|344212530|ref|YP_004796850.1| - 7.9e-12 45.9 0.1 2.8e-11 44.2 0.0 1.8 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal MraZ PF02381.18 gi|344212532|ref|YP_004796852.1| - 0.001 19.0 1.0 0.0034 17.3 0.0 2.0 2 1 0 2 2 2 1 MraZ protein, putative antitoxin-like kleA_kleC PF17383.2 gi|344212532|ref|YP_004796852.1| - 0.052 13.9 0.2 0.079 13.3 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized KorC regulated protein A DUF1474 PF07342.11 gi|344212532|ref|YP_004796852.1| - 0.069 13.7 0.0 0.082 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1474) MazE_antitoxin PF04014.18 gi|344212532|ref|YP_004796852.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.7 1 1 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|344212533|ref|YP_004796853.1| - 5.9e-08 33.2 1.0 7.6e-08 32.9 1.0 1.2 1 0 0 1 1 1 1 PIN domain AAA PF00004.29 gi|344212534|ref|YP_004796854.1| - 7.1e-11 42.7 0.0 2.3e-10 41.0 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|344212534|ref|YP_004796854.1| - 2.3e-05 24.2 0.0 5.7e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|344212534|ref|YP_004796854.1| - 0.00017 22.0 0.0 0.0069 16.8 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|344212534|ref|YP_004796854.1| - 0.00042 20.6 0.0 0.23 11.7 0.0 2.9 2 1 1 3 3 3 2 AAA domain Rad17 PF03215.15 gi|344212534|ref|YP_004796854.1| - 0.0041 17.1 0.0 0.0076 16.2 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|344212534|ref|YP_004796854.1| - 0.0041 17.4 0.1 0.013 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|344212534|ref|YP_004796854.1| - 0.0054 16.7 0.1 0.041 13.9 0.0 2.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|344212534|ref|YP_004796854.1| - 0.0059 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|344212534|ref|YP_004796854.1| - 0.0072 16.7 0.0 0.11 12.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_assoc_2 PF16193.5 gi|344212534|ref|YP_004796854.1| - 0.0079 16.5 0.2 0.026 14.9 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_33 PF13671.6 gi|344212534|ref|YP_004796854.1| - 0.014 15.6 0.2 0.08 13.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|344212534|ref|YP_004796854.1| - 0.023 14.5 0.0 0.19 11.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein IPT PF01745.16 gi|344212534|ref|YP_004796854.1| - 0.03 13.7 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase Zeta_toxin PF06414.12 gi|344212534|ref|YP_004796854.1| - 0.032 13.5 0.0 0.064 12.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Hydin_ADK PF17213.3 gi|344212534|ref|YP_004796854.1| - 0.035 14.4 0.1 0.035 14.4 0.1 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain NACHT PF05729.12 gi|344212534|ref|YP_004796854.1| - 0.052 13.5 0.0 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|344212534|ref|YP_004796854.1| - 0.1 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|344212534|ref|YP_004796854.1| - 0.13 11.4 0.0 0.28 10.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) BPD_transp_1 PF00528.22 gi|344212535|ref|YP_004796855.1| - 4.7e-20 72.1 8.4 4.7e-20 72.1 8.4 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|344212536|ref|YP_004796856.1| - 1.1e-31 110.2 0.0 1.5e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212536|ref|YP_004796856.1| - 9.9e-12 45.3 0.0 3.3e-07 30.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344212536|ref|YP_004796856.1| - 9e-09 35.1 0.0 8.6e-08 31.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344212536|ref|YP_004796856.1| - 0.00011 22.6 0.1 0.00016 22.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|344212536|ref|YP_004796856.1| - 0.00021 21.1 0.0 0.00026 20.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|344212536|ref|YP_004796856.1| - 0.00026 20.7 0.0 0.00051 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|344212536|ref|YP_004796856.1| - 0.01 16.1 0.1 0.016 15.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|344212536|ref|YP_004796856.1| - 0.015 15.2 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|344212536|ref|YP_004796856.1| - 0.044 13.4 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344212536|ref|YP_004796856.1| - 0.05 14.2 0.0 0.093 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|344212536|ref|YP_004796856.1| - 0.05 12.4 0.0 1.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class S4 PF01479.25 gi|344212536|ref|YP_004796856.1| - 0.054 13.2 0.0 0.2 11.4 0.0 1.9 2 0 0 2 2 2 0 S4 domain ATPase_2 PF01637.18 gi|344212536|ref|YP_004796856.1| - 0.062 13.2 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|344212536|ref|YP_004796856.1| - 0.094 13.1 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|344212536|ref|YP_004796856.1| - 0.1 12.9 0.6 1.4 9.2 0.2 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.17 gi|344212536|ref|YP_004796856.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|344212536|ref|YP_004796856.1| - 0.12 12.5 0.1 0.17 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|344212536|ref|YP_004796856.1| - 0.15 12.5 0.0 1.4 9.4 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|344212536|ref|YP_004796856.1| - 0.18 12.3 0.0 0.28 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344212536|ref|YP_004796856.1| - 0.25 11.0 0.0 2.2 7.9 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|344212537|ref|YP_004796857.1| - 7.3e-23 81.3 9.6 9.4e-23 80.9 9.6 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|344212538|ref|YP_004796858.1| - 1.3e-56 191.6 0.1 1.5e-56 191.4 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|344212538|ref|YP_004796858.1| - 2.8e-08 33.9 0.1 3.2e-07 30.5 0.1 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|344212538|ref|YP_004796858.1| - 0.001 19.0 0.0 0.0038 17.2 0.0 1.8 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|344212538|ref|YP_004796858.1| - 0.014 15.0 0.1 0.018 14.7 0.1 1.2 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|344212538|ref|YP_004796858.1| - 0.09 12.7 0.5 0.2 11.6 0.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence COX15-CtaA PF02628.15 gi|344212539|ref|YP_004796859.1| - 2.3e-10 40.1 15.7 2.9e-06 26.6 6.1 2.0 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein MCPsignal PF00015.21 gi|344212540|ref|YP_004796860.1| - 2.3e-42 144.7 53.5 1.4e-40 139.0 22.1 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|344212540|ref|YP_004796860.1| - 6.2e-11 42.3 0.0 3e-10 40.1 0.0 2.3 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|344212540|ref|YP_004796860.1| - 7.1e-11 42.3 0.4 1.9e-09 37.8 0.1 3.1 2 1 0 2 2 1 1 PAS fold PAS_9 PF13426.7 gi|344212540|ref|YP_004796860.1| - 2.4e-08 34.2 0.0 1e-07 32.1 0.0 2.2 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|344212540|ref|YP_004796860.1| - 1.7e-05 24.7 0.0 9e-05 22.4 0.0 2.3 1 0 0 1 1 1 1 PAS domain MLTR_LBD PF17765.1 gi|344212540|ref|YP_004796860.1| - 0.00018 21.7 0.4 0.0033 17.5 0.0 3.3 2 1 1 3 3 3 1 MmyB-like transcription regulator ligand binding domain DUF948 PF06103.11 gi|344212540|ref|YP_004796860.1| - 0.0013 18.9 44.7 0.016 15.4 5.9 5.4 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|344212540|ref|YP_004796860.1| - 0.003 17.6 35.0 0.014 15.5 3.4 5.0 5 1 1 6 6 4 2 Protein of unknown function (DUF1664) PAS_3 PF08447.12 gi|344212540|ref|YP_004796860.1| - 0.033 14.5 0.0 0.43 10.9 0.0 2.8 1 1 0 1 1 1 0 PAS fold TMP_2 PF06791.13 gi|344212540|ref|YP_004796860.1| - 0.035 13.8 35.3 0.047 13.4 10.0 3.4 1 1 0 2 2 2 0 Prophage tail length tape measure protein HAMP PF00672.25 gi|344212540|ref|YP_004796860.1| - 0.039 14.3 0.1 0.039 14.3 0.1 4.3 6 0 0 6 6 3 0 HAMP domain Spc7 PF08317.11 gi|344212540|ref|YP_004796860.1| - 0.077 11.9 33.4 0.15 10.9 12.3 3.2 1 1 3 4 4 4 0 Spc7 kinetochore protein CheZ PF04344.13 gi|344212540|ref|YP_004796860.1| - 0.086 12.8 28.0 1.3 8.9 5.3 3.8 2 1 1 3 3 3 0 Chemotaxis phosphatase, CheZ SF1-HH PF16275.5 gi|344212540|ref|YP_004796860.1| - 0.09 13.1 0.4 0.51 10.7 0.0 2.4 2 0 0 2 2 2 0 Splicing factor 1 helix-hairpin domain IFT20 PF14931.6 gi|344212540|ref|YP_004796860.1| - 0.092 12.9 20.2 0.31 11.2 0.0 4.6 3 1 1 4 4 4 0 Intraflagellar transport complex B, subunit 20 HD_2 PF12917.7 gi|344212540|ref|YP_004796860.1| - 0.12 12.1 11.0 0.55 10.0 1.8 2.9 2 1 0 2 2 2 0 HD containing hydrolase-like enzyme DUF4279 PF14106.6 gi|344212540|ref|YP_004796860.1| - 0.16 12.2 2.3 12 6.1 0.0 3.8 3 1 1 4 4 4 0 Domain of unknown function (DUF4279) Baculo_PEP_C PF04513.12 gi|344212540|ref|YP_004796860.1| - 0.33 11.0 31.1 0.49 10.4 6.5 4.3 3 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus COMM_domain PF07258.14 gi|344212540|ref|YP_004796860.1| - 0.46 10.6 3.1 20 5.4 0.0 3.7 3 1 0 3 3 3 0 COMM domain ERM PF00769.19 gi|344212540|ref|YP_004796860.1| - 0.52 10.1 33.3 0.72 9.6 14.1 3.3 3 0 0 3 3 3 0 Ezrin/radixin/moesin family IFT57 PF10498.9 gi|344212540|ref|YP_004796860.1| - 0.64 8.9 27.2 0.27 10.2 3.7 4.1 3 1 1 4 4 4 0 Intra-flagellar transport protein 57 bZIP_1 PF00170.21 gi|344212540|ref|YP_004796860.1| - 0.73 10.0 2.1 1.3e+02 2.7 0.0 4.1 4 0 0 4 4 3 0 bZIP transcription factor Sec34 PF04136.15 gi|344212540|ref|YP_004796860.1| - 0.91 9.4 21.7 4.9 7.0 0.0 4.4 2 2 2 4 4 4 0 Sec34-like family Syntaxin-6_N PF09177.11 gi|344212540|ref|YP_004796860.1| - 1.3 9.6 31.8 1.4 9.5 0.4 5.0 4 2 1 5 5 4 0 Syntaxin 6, N-terminal DUF1759 PF03564.15 gi|344212540|ref|YP_004796860.1| - 1.4 8.8 8.6 1.7 8.6 0.9 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF1759) DUF3450 PF11932.8 gi|344212540|ref|YP_004796860.1| - 1.7 7.9 39.6 0.04 13.2 9.7 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DUF745 PF05335.13 gi|344212540|ref|YP_004796860.1| - 1.7 8.4 49.6 0.32 10.7 14.6 4.0 4 1 1 5 5 3 0 Protein of unknown function (DUF745) SKA1 PF07160.12 gi|344212540|ref|YP_004796860.1| - 1.7 8.5 20.1 4.5 7.0 8.3 2.7 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 AIP3 PF03915.13 gi|344212540|ref|YP_004796860.1| - 1.8 7.6 30.5 3.2 6.7 12.0 3.0 1 1 1 2 2 2 0 Actin interacting protein 3 Atg14 PF10186.9 gi|344212540|ref|YP_004796860.1| - 1.8 7.6 10.4 7 5.6 0.2 2.3 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 FlgN PF05130.12 gi|344212540|ref|YP_004796860.1| - 2.1 8.9 25.3 0.96 10.0 5.8 4.2 2 1 2 4 4 4 0 FlgN protein Prominin PF05478.11 gi|344212540|ref|YP_004796860.1| - 3.3 5.5 19.5 0.79 7.6 4.3 2.4 1 1 0 2 2 2 0 Prominin FUSC PF04632.12 gi|344212540|ref|YP_004796860.1| - 3.7 6.0 23.9 4.8 5.6 10.2 2.7 1 1 2 3 3 3 0 Fusaric acid resistance protein family T3SSipB PF16535.5 gi|344212540|ref|YP_004796860.1| - 5.3 7.5 43.2 0.39 11.2 3.6 4.1 2 2 1 3 3 3 0 Type III cell invasion protein SipB COG2 PF06148.11 gi|344212540|ref|YP_004796860.1| - 6.1 6.9 30.6 0.51 10.4 3.4 5.4 2 1 4 6 6 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Vps54_N PF10475.9 gi|344212540|ref|YP_004796860.1| - 6.4 6.0 9.5 2.8 7.1 0.2 3.0 2 1 1 3 3 3 0 Vacuolar-sorting protein 54, of GARP complex DUF2203 PF09969.9 gi|344212540|ref|YP_004796860.1| - 6.5 7.5 28.5 0.35 11.6 2.3 5.3 3 1 0 4 4 3 0 Uncharacterized conserved protein (DUF2203) Snapin_Pallidin PF14712.6 gi|344212540|ref|YP_004796860.1| - 6.8 7.2 13.9 5.4 7.5 1.4 4.2 3 1 0 3 3 3 0 Snapin/Pallidin MscS_porin PF12795.7 gi|344212540|ref|YP_004796860.1| - 7 6.1 34.3 0.64 9.5 13.2 3.0 2 1 1 3 3 3 0 Mechanosensitive ion channel porin domain TolA_bind_tri PF16331.5 gi|344212540|ref|YP_004796860.1| - 7.8 6.7 12.3 4.7 7.4 3.7 3.7 2 1 2 4 4 4 0 TolA binding protein trimerisation Laminin_II PF06009.12 gi|344212540|ref|YP_004796860.1| - 8.8 6.3 43.1 1.9 8.5 6.1 4.8 3 2 2 5 5 4 0 Laminin Domain II PTA_PTB PF01515.19 gi|344212541|ref|YP_004796861.1| - 7.4e-95 317.9 0.0 1.1e-94 317.4 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|344212541|ref|YP_004796861.1| - 4.9e-31 107.9 0.3 2e-28 99.4 0.1 2.8 2 1 0 2 2 2 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|344212541|ref|YP_004796861.1| - 4.8e-22 78.5 0.3 1.3e-21 77.1 0.3 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF5325 PF17259.2 gi|344212542|ref|YP_004796862.1| - 4.7 7.2 7.8 6.2 6.8 7.8 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5325) RVT_3 PF13456.6 gi|344212543|ref|YP_004796863.1| - 0.00034 20.4 0.0 0.00051 19.8 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like Pribosyltran PF00156.27 gi|344212545|ref|YP_004796865.1| - 6.6e-16 58.2 0.0 9.8e-16 57.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|344212545|ref|YP_004796865.1| - 0.013 15.5 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain TruD PF01142.18 gi|344212546|ref|YP_004796866.1| - 3.9e-163 543.1 0.0 4.4e-163 542.9 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF2138 PF09909.9 gi|344212546|ref|YP_004796866.1| - 0.25 9.6 0.0 0.36 9.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) MFS_1 PF07690.16 gi|344212547|ref|YP_004796867.1| - 3e-11 42.9 58.8 5.9e-07 28.7 33.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily SCFA_trans PF02667.14 gi|344212548|ref|YP_004796868.1| - 3.4e-124 415.3 19.2 3.9e-124 415.1 19.2 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter DcuC PF03606.15 gi|344212548|ref|YP_004796868.1| - 3e-05 22.7 9.4 3e-05 22.7 9.4 1.8 2 0 0 2 2 2 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.13 gi|344212548|ref|YP_004796868.1| - 0.00012 20.5 6.4 0.00012 20.5 6.4 1.6 2 0 0 2 2 2 1 AbgT putative transporter family 2-Hacid_dh_C PF02826.19 gi|344212549|ref|YP_004796869.1| - 3e-55 186.3 0.0 6e-55 185.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|344212549|ref|YP_004796869.1| - 1.6e-31 108.7 0.4 1.8e-31 108.6 0.4 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|344212549|ref|YP_004796869.1| - 0.021 15.2 0.4 0.78 10.2 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ThiP_synth PF10120.9 gi|344212550|ref|YP_004796870.1| - 1.6e-52 177.4 0.7 2.7e-52 176.7 0.7 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|344212550|ref|YP_004796870.1| - 7.7e-06 25.9 0.0 2e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|344212550|ref|YP_004796870.1| - 3.3e-05 24.1 1.4 0.00022 21.5 0.3 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|344212550|ref|YP_004796870.1| - 8.6e-05 22.2 0.2 0.00029 20.5 0.1 2.0 1 1 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|344212550|ref|YP_004796870.1| - 0.00014 21.3 0.0 0.00038 19.9 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.6 gi|344212550|ref|YP_004796870.1| - 0.00042 20.2 0.0 0.00087 19.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344212550|ref|YP_004796870.1| - 0.0049 16.5 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|344212550|ref|YP_004796870.1| - 0.013 15.4 0.0 0.039 13.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain MarR_2 PF12802.7 gi|344212550|ref|YP_004796870.1| - 0.014 15.3 0.0 0.06 13.2 0.0 2.2 1 0 0 1 1 1 0 MarR family HTH_19 PF12844.7 gi|344212550|ref|YP_004796870.1| - 0.018 15.0 0.0 0.041 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|344212550|ref|YP_004796870.1| - 0.024 14.4 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain RepB PF07506.11 gi|344212550|ref|YP_004796870.1| - 0.036 14.1 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 RepB plasmid partitioning protein KorB PF08535.10 gi|344212550|ref|YP_004796870.1| - 0.051 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 KorB domain YdaS_antitoxin PF15943.5 gi|344212550|ref|YP_004796870.1| - 0.069 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_24 PF13412.6 gi|344212550|ref|YP_004796870.1| - 0.095 12.3 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding P22_Cro PF14549.6 gi|344212550|ref|YP_004796870.1| - 0.098 12.5 0.1 0.3 11.0 0.1 1.8 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro TENA_THI-4 PF03070.16 gi|344212551|ref|YP_004796871.1| - 4.7e-46 157.2 0.8 5.8e-46 157.0 0.8 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|344212552|ref|YP_004796872.1| - 7e-24 84.8 0.0 1e-23 84.3 0.0 1.2 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.17 gi|344212553|ref|YP_004796873.1| - 4.7e-23 81.7 33.1 7.8e-23 81.0 33.1 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF997 PF06196.12 gi|344212553|ref|YP_004796873.1| - 5.5 7.1 10.0 23 5.1 3.1 3.2 2 0 0 2 2 2 0 Protein of unknown function (DUF997) DUF3742 PF12553.8 gi|344212554|ref|YP_004796874.1| - 6 7.0 7.3 6.1 7.0 7.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) Usp PF00582.26 gi|344212555|ref|YP_004796875.1| - 4.2e-13 50.0 0.0 4.6e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Universal stress protein family Proteasome PF00227.26 gi|344212556|ref|YP_004796876.1| - 1.6e-45 155.0 0.2 1.8e-45 154.8 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.26 gi|344212557|ref|YP_004796877.1| - 1.7e-61 207.1 0.0 2.1e-61 206.7 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|344212557|ref|YP_004796877.1| - 6.9e-14 51.2 0.1 1.5e-13 50.2 0.1 1.6 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature PTH2 PF01981.16 gi|344212558|ref|YP_004796878.1| - 3.9e-39 133.5 0.0 4.4e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Yip1 PF04893.17 gi|344212559|ref|YP_004796879.1| - 3.9e-27 95.0 9.6 4.8e-27 94.8 9.6 1.1 1 0 0 1 1 1 1 Yip1 domain DUF3021 PF11457.8 gi|344212559|ref|YP_004796879.1| - 5.9 7.2 7.3 3.1 8.1 3.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3021) DCD PF06559.11 gi|344212560|ref|YP_004796880.1| - 4.2e-17 62.0 0.0 3e-14 52.6 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|344212560|ref|YP_004796880.1| - 2.4e-14 53.1 0.0 3.3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase ThiP_synth PF10120.9 gi|344212561|ref|YP_004796881.1| - 1.6e-53 180.7 0.7 2.1e-53 180.3 0.7 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|344212561|ref|YP_004796881.1| - 1.5e-07 31.3 0.0 3e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|344212561|ref|YP_004796881.1| - 1.8e-05 25.0 0.2 1.8e-05 25.0 0.2 2.4 3 1 0 3 3 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|344212561|ref|YP_004796881.1| - 2.1e-05 24.5 0.0 4.6e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|344212561|ref|YP_004796881.1| - 7.4e-05 22.6 0.0 0.00015 21.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|344212561|ref|YP_004796881.1| - 0.0001 22.0 0.0 0.00026 20.7 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|344212561|ref|YP_004796881.1| - 0.00016 21.1 0.0 0.0006 19.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_26 PF13443.6 gi|344212561|ref|YP_004796881.1| - 0.00028 21.3 0.0 0.00053 20.4 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|344212561|ref|YP_004796881.1| - 0.00035 20.1 0.2 0.0011 18.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344212561|ref|YP_004796881.1| - 0.00089 19.1 0.0 0.0038 17.1 0.0 2.1 1 0 0 1 1 1 1 MarR family PALP PF00291.25 gi|344212561|ref|YP_004796881.1| - 0.0036 16.8 0.4 0.0069 15.8 0.4 1.4 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Sigma70_r4_2 PF08281.12 gi|344212561|ref|YP_004796881.1| - 0.009 15.7 0.1 0.037 13.7 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_8 PF02954.19 gi|344212561|ref|YP_004796881.1| - 0.012 15.4 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_5 PF01022.20 gi|344212561|ref|YP_004796881.1| - 0.012 15.4 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|344212561|ref|YP_004796881.1| - 0.014 15.6 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|344212561|ref|YP_004796881.1| - 0.014 15.4 2.7 0.17 12.0 0.0 3.7 4 1 1 5 5 3 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|344212561|ref|YP_004796881.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|344212561|ref|YP_004796881.1| - 0.019 14.7 0.0 0.051 13.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|344212561|ref|YP_004796881.1| - 0.034 14.1 0.0 0.13 12.2 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family P22_Cro PF14549.6 gi|344212561|ref|YP_004796881.1| - 0.039 13.8 0.4 0.12 12.2 0.0 2.0 2 0 0 2 2 1 0 DNA-binding transcriptional regulator Cro DUF1670 PF07900.11 gi|344212561|ref|YP_004796881.1| - 0.06 12.7 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_Tnp_ISL3 PF13542.6 gi|344212561|ref|YP_004796881.1| - 0.06 12.8 0.1 0.36 10.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.10 gi|344212561|ref|YP_004796881.1| - 0.064 13.1 2.4 0.15 11.9 0.0 2.7 3 0 0 3 3 3 0 IclR helix-turn-helix domain KORA PF16509.5 gi|344212561|ref|YP_004796881.1| - 0.084 13.2 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_Tnp_4 PF13613.6 gi|344212561|ref|YP_004796881.1| - 0.096 12.4 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_10 PF04967.12 gi|344212561|ref|YP_004796881.1| - 0.11 12.3 0.1 0.4 10.5 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain RepB PF07506.11 gi|344212561|ref|YP_004796881.1| - 0.12 12.4 0.1 0.33 11.0 0.0 1.7 2 0 0 2 2 2 0 RepB plasmid partitioning protein HNF-1_N PF04814.13 gi|344212561|ref|YP_004796881.1| - 0.17 12.5 0.0 0.33 11.6 0.0 1.3 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus TrbH PF07283.11 gi|344212561|ref|YP_004796881.1| - 0.19 11.9 0.0 0.4 10.9 0.0 1.5 1 0 0 1 1 1 0 Conjugal transfer protein TrbH Methyltransf_25 PF13649.6 gi|344212562|ref|YP_004796882.1| - 1.3e-13 51.4 0.0 2.5e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344212562|ref|YP_004796882.1| - 1.5e-13 51.2 0.0 2.5e-13 50.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344212562|ref|YP_004796882.1| - 4.7e-12 45.7 0.0 6.4e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|344212562|ref|YP_004796882.1| - 1.9e-11 44.1 0.0 2.4e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212562|ref|YP_004796882.1| - 5.3e-10 39.3 0.0 6.4e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344212562|ref|YP_004796882.1| - 1.3e-09 38.7 0.0 2e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344212562|ref|YP_004796882.1| - 6.2e-07 29.4 0.0 7.6e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|344212562|ref|YP_004796882.1| - 0.00016 21.9 0.0 0.00052 20.2 0.0 1.7 1 1 1 2 2 2 1 FtsJ-like methyltransferase GCD14 PF08704.10 gi|344212562|ref|YP_004796882.1| - 0.0069 16.1 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|344212562|ref|YP_004796882.1| - 0.0069 15.7 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|344212562|ref|YP_004796882.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|344212562|ref|YP_004796882.1| - 0.016 14.3 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.18 gi|344212562|ref|YP_004796882.1| - 0.048 13.0 0.0 0.071 12.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_19 PF04672.12 gi|344212562|ref|YP_004796882.1| - 0.069 12.6 0.5 0.29 10.6 0.3 2.2 1 1 0 1 1 1 0 S-adenosyl methyltransferase MTS PF05175.14 gi|344212562|ref|YP_004796882.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain ABC2_membrane PF01061.24 gi|344212563|ref|YP_004796883.1| - 1.7e-27 96.3 12.9 2.3e-27 95.8 12.9 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|344212563|ref|YP_004796883.1| - 1.1e-11 44.4 9.4 1.1e-11 44.4 9.4 1.6 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|344212564|ref|YP_004796884.1| - 2.7e-29 102.4 0.0 3.8e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212564|ref|YP_004796884.1| - 2.3e-13 50.6 0.0 2.6e-09 37.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|344212564|ref|YP_004796884.1| - 4.2e-08 33.8 0.0 8.6e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|344212564|ref|YP_004796884.1| - 5.2e-05 23.0 0.9 5.2e-05 23.0 0.9 1.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|344212564|ref|YP_004796884.1| - 0.011 15.5 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|344212564|ref|YP_004796884.1| - 0.013 15.9 0.1 0.026 14.9 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|344212564|ref|YP_004796884.1| - 0.014 15.1 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344212564|ref|YP_004796884.1| - 0.043 13.7 0.0 0.56 10.1 0.0 2.2 1 1 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|344212564|ref|YP_004796884.1| - 0.059 13.9 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|344212564|ref|YP_004796884.1| - 0.063 13.0 0.0 0.45 10.2 0.0 2.0 2 0 0 2 2 2 0 Thymidylate kinase SRP54 PF00448.22 gi|344212564|ref|YP_004796884.1| - 0.07 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|344212564|ref|YP_004796884.1| - 0.097 12.9 0.0 0.21 11.8 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.17 gi|344212564|ref|YP_004796884.1| - 0.13 12.0 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|344212564|ref|YP_004796884.1| - 0.15 12.5 0.1 0.33 11.4 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|344212564|ref|YP_004796884.1| - 0.15 12.0 0.0 1 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) HTH_10 PF04967.12 gi|344212565|ref|YP_004796885.1| - 4.3e-18 64.8 0.0 6.9e-18 64.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|344212565|ref|YP_004796885.1| - 1.3e-05 24.8 0.1 0.0011 18.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|344212565|ref|YP_004796885.1| - 0.0009 19.0 0.1 0.002 17.9 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|344212565|ref|YP_004796885.1| - 0.002 17.6 0.0 0.0048 16.4 0.0 1.6 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|344212565|ref|YP_004796885.1| - 0.0028 17.1 0.0 0.006 16.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|344212565|ref|YP_004796885.1| - 0.01 15.8 0.4 0.029 14.4 0.1 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|344212565|ref|YP_004796885.1| - 0.032 14.0 0.0 0.12 12.2 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|344212565|ref|YP_004796885.1| - 0.048 13.6 0.2 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|344212565|ref|YP_004796885.1| - 0.095 12.7 0.1 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix LacI PF00356.21 gi|344212565|ref|YP_004796885.1| - 0.11 12.4 0.1 20 5.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_24 PF13412.6 gi|344212565|ref|YP_004796885.1| - 0.19 11.3 0.0 0.42 10.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Methyltransf_25 PF13649.6 gi|344212568|ref|YP_004796888.1| - 7.1e-05 23.4 0.1 0.014 16.1 0.0 2.9 3 1 0 3 3 3 1 Methyltransferase domain FtsJ PF01728.19 gi|344212568|ref|YP_004796888.1| - 0.0003 20.9 0.0 0.00035 20.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.12 gi|344212568|ref|YP_004796888.1| - 0.00067 20.3 0.2 0.0067 17.1 0.2 2.4 1 1 0 1 1 1 1 Methyltransferase domain PBP-Tp47_c PF14888.6 gi|344212568|ref|YP_004796888.1| - 0.059 13.3 0.0 0.084 12.8 0.0 1.2 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain C Thi4 PF01946.17 gi|344212569|ref|YP_004796889.1| - 2.5e-59 200.4 0.8 3.2e-48 164.0 0.3 2.2 1 1 1 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|344212569|ref|YP_004796889.1| - 4.5e-12 46.1 0.5 8.7e-12 45.1 0.5 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|344212569|ref|YP_004796889.1| - 9.5e-11 41.4 1.1 3.6e-08 32.9 0.5 2.2 1 1 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|344212569|ref|YP_004796889.1| - 1.3e-10 41.1 0.1 2.4e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|344212569|ref|YP_004796889.1| - 1.6e-10 41.1 1.1 2.5e-06 27.3 0.3 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344212569|ref|YP_004796889.1| - 2.5e-09 36.4 0.0 3.4e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|344212569|ref|YP_004796889.1| - 5.8e-09 36.0 0.3 3.8e-08 33.4 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|344212569|ref|YP_004796889.1| - 6.5e-08 32.2 0.1 1.4e-07 31.0 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|344212569|ref|YP_004796889.1| - 6.5e-06 25.3 0.3 0.0014 17.6 0.2 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|344212569|ref|YP_004796889.1| - 1.9e-05 24.1 0.1 3.5e-05 23.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344212569|ref|YP_004796889.1| - 1.9e-05 25.1 1.5 2.8e-05 24.6 0.3 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|344212569|ref|YP_004796889.1| - 3.9e-05 22.9 0.3 0.0013 17.9 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|344212569|ref|YP_004796889.1| - 4.5e-05 23.5 0.4 0.00014 21.9 0.1 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|344212569|ref|YP_004796889.1| - 0.00026 20.4 0.0 0.00092 18.6 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|344212569|ref|YP_004796889.1| - 0.00081 18.6 0.3 0.0013 17.9 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Glu_dehyd_C PF16912.5 gi|344212569|ref|YP_004796889.1| - 0.0011 18.5 0.5 1.7 8.1 0.0 2.7 3 0 0 3 3 3 2 Glucose dehydrogenase C-terminus Shikimate_DH PF01488.20 gi|344212569|ref|YP_004796889.1| - 0.0018 18.4 0.0 0.086 12.9 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|344212569|ref|YP_004796889.1| - 0.0019 18.6 0.1 0.004 17.6 0.1 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding YjeF_N PF03853.15 gi|344212569|ref|YP_004796889.1| - 0.011 15.6 0.1 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus TrkA_N PF02254.18 gi|344212569|ref|YP_004796889.1| - 0.033 14.5 1.0 0.045 14.0 0.1 1.7 2 0 0 2 2 1 0 TrkA-N domain Ribosomal_S2 PF00318.20 gi|344212569|ref|YP_004796889.1| - 0.042 13.1 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S2 AlaDh_PNT_C PF01262.21 gi|344212569|ref|YP_004796889.1| - 0.062 12.6 0.2 0.16 11.3 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1188 PF06690.11 gi|344212569|ref|YP_004796889.1| - 0.11 12.0 0.0 5.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) Gate PF07670.14 gi|344212570|ref|YP_004796890.1| - 3.5e-06 27.3 1.6 3.5e-06 27.3 1.6 4.0 3 2 2 5 5 5 2 Nucleoside recognition HTH_10 PF04967.12 gi|344212571|ref|YP_004796891.1| - 3.1e-18 65.3 0.4 7.2e-18 64.1 0.3 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|344212571|ref|YP_004796891.1| - 5.5e-08 32.4 0.6 7.9e-07 28.7 0.6 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|344212571|ref|YP_004796891.1| - 0.00056 19.4 0.3 0.0015 18.0 0.3 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|344212571|ref|YP_004796891.1| - 0.0087 16.1 0.1 0.37 10.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.6 gi|344212571|ref|YP_004796891.1| - 0.011 15.8 0.1 0.16 12.1 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain GerE PF00196.19 gi|344212571|ref|YP_004796891.1| - 0.071 12.7 0.0 0.49 10.0 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|344212571|ref|YP_004796891.1| - 0.084 12.4 0.2 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Urocanase_C PF17392.2 gi|344212572|ref|YP_004796892.1| - 6.4e-87 290.1 0.2 9.7e-87 289.5 0.2 1.3 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|344212572|ref|YP_004796892.1| - 5.7e-82 274.4 0.1 7.9e-82 274.0 0.1 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|344212572|ref|YP_004796892.1| - 2.1e-57 192.3 0.0 4.1e-57 191.4 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain Arginase PF00491.21 gi|344212573|ref|YP_004796893.1| - 1.3e-57 195.4 1.1 1.5e-57 195.2 1.1 1.0 1 0 0 1 1 1 1 Arginase family GCH_III PF05165.12 gi|344212573|ref|YP_004796893.1| - 0.023 13.9 0.0 0.045 13.0 0.0 1.5 1 0 0 1 1 1 0 GTP cyclohydrolase III Amidohydro_3 PF07969.11 gi|344212574|ref|YP_004796894.1| - 2e-12 47.4 12.8 4e-06 26.6 6.8 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|344212574|ref|YP_004796894.1| - 3.3e-12 46.4 0.7 5e-05 22.8 0.2 2.2 1 1 0 2 2 2 2 Amidohydrolase family vATP-synt_AC39 PF01992.16 gi|344212574|ref|YP_004796894.1| - 0.16 11.5 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit Lyase_aromatic PF00221.19 gi|344212575|ref|YP_004796895.1| - 3e-186 619.6 13.4 3.5e-186 619.4 13.4 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase AAA PF00004.29 gi|344212576|ref|YP_004796896.1| - 1.2e-80 268.4 0.0 1.9e-39 135.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|344212576|ref|YP_004796896.1| - 3.2e-12 46.1 2.7 4.5e-06 26.4 0.2 2.6 2 0 0 2 2 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|344212576|ref|YP_004796896.1| - 3e-11 43.3 0.0 9e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|344212576|ref|YP_004796896.1| - 1.2e-10 41.6 0.3 7.6e-05 22.7 0.0 3.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|344212576|ref|YP_004796896.1| - 2.2e-10 41.2 5.1 0.0054 17.1 0.3 4.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|344212576|ref|YP_004796896.1| - 4.8e-10 39.8 0.0 0.00037 20.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|344212576|ref|YP_004796896.1| - 6.3e-08 32.6 0.4 0.0079 15.9 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|344212576|ref|YP_004796896.1| - 1.1e-07 32.2 0.1 0.023 14.9 0.0 3.5 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|344212576|ref|YP_004796896.1| - 1.7e-07 31.5 0.0 0.066 13.4 0.0 3.8 4 0 0 4 4 3 2 AAA domain AAA_14 PF13173.6 gi|344212576|ref|YP_004796896.1| - 2.2e-07 31.0 0.0 0.019 15.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|344212576|ref|YP_004796896.1| - 2.9e-07 31.1 0.0 0.049 14.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|344212576|ref|YP_004796896.1| - 3.4e-07 30.6 0.0 0.025 15.0 0.0 2.5 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.12 gi|344212576|ref|YP_004796896.1| - 4.1e-07 30.1 0.6 0.71 9.8 0.0 4.2 2 2 2 4 4 4 2 NACHT domain Viral_helicase1 PF01443.18 gi|344212576|ref|YP_004796896.1| - 2.1e-06 27.7 0.0 0.058 13.1 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Bac_DnaA PF00308.18 gi|344212576|ref|YP_004796896.1| - 2.8e-05 24.1 0.0 0.11 12.3 0.0 2.8 2 2 0 2 2 2 2 Bacterial dnaA protein AAA_28 PF13521.6 gi|344212576|ref|YP_004796896.1| - 3.8e-05 24.0 1.6 0.34 11.1 0.0 3.7 4 1 0 4 4 3 2 AAA domain TIP49 PF06068.13 gi|344212576|ref|YP_004796896.1| - 5.4e-05 22.6 0.0 0.4 9.8 0.0 2.6 2 1 1 3 3 3 2 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|344212576|ref|YP_004796896.1| - 5.9e-05 22.5 0.2 0.2 11.0 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|344212576|ref|YP_004796896.1| - 6.2e-05 22.4 0.2 0.26 10.5 0.0 2.9 3 0 0 3 3 3 2 Zeta toxin ABC_tran PF00005.27 gi|344212576|ref|YP_004796896.1| - 0.00011 22.7 0.0 0.63 10.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.6 gi|344212576|ref|YP_004796896.1| - 0.00031 20.4 4.2 2.6 7.6 0.2 4.1 2 2 1 3 3 3 1 AAA domain Rad17 PF03215.15 gi|344212576|ref|YP_004796896.1| - 0.00036 20.5 0.0 0.91 9.4 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain AAA_11 PF13086.6 gi|344212576|ref|YP_004796896.1| - 0.00037 20.4 0.0 0.3 10.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|344212576|ref|YP_004796896.1| - 0.00044 20.1 0.0 0.77 9.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|344212576|ref|YP_004796896.1| - 0.0014 19.0 0.2 1.6 9.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|344212576|ref|YP_004796896.1| - 0.0015 18.5 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cytidylate_kin2 PF13189.6 gi|344212576|ref|YP_004796896.1| - 0.0016 18.6 0.0 0.66 10.1 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_7 PF12775.7 gi|344212576|ref|YP_004796896.1| - 0.0029 17.1 0.0 1.3 8.5 0.0 2.6 2 1 0 2 2 2 1 P-loop containing dynein motor region AAA_24 PF13479.6 gi|344212576|ref|YP_004796896.1| - 0.004 16.9 0.1 1.2 8.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|344212576|ref|YP_004796896.1| - 0.0082 16.3 0.1 3.5 7.8 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain SKI PF01202.22 gi|344212576|ref|YP_004796896.1| - 0.024 14.8 0.0 10 6.2 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Guanylate_kin PF00625.21 gi|344212576|ref|YP_004796896.1| - 0.031 13.9 0.1 22 4.7 0.0 3.7 3 2 2 5 5 5 0 Guanylate kinase Parvo_NS1 PF01057.17 gi|344212576|ref|YP_004796896.1| - 0.045 12.8 0.0 7 5.7 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|344212576|ref|YP_004796896.1| - 0.045 13.5 0.0 6.4 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|344212576|ref|YP_004796896.1| - 0.052 13.2 0.0 11 5.6 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|344212576|ref|YP_004796896.1| - 0.066 13.1 0.2 2.9 7.7 0.0 3.0 3 1 1 4 4 4 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|344212576|ref|YP_004796896.1| - 0.067 12.6 0.4 8.5 5.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.6 gi|344212576|ref|YP_004796896.1| - 0.088 13.1 0.1 17 5.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|344212576|ref|YP_004796896.1| - 0.11 11.6 0.0 8.4 5.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Lipoprotein_Ltp PF07553.11 gi|344212576|ref|YP_004796896.1| - 0.13 12.6 0.1 24 5.3 0.0 2.5 2 0 0 2 2 2 0 Host cell surface-exposed lipoprotein PPS_PS PF02006.16 gi|344212577|ref|YP_004796897.1| - 2.5e-70 235.6 1.1 3.1e-70 235.3 1.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Phage_GPD PF05954.11 gi|344212577|ref|YP_004796897.1| - 0.057 12.7 0.2 0.095 12.0 0.2 1.3 1 0 0 1 1 1 0 Phage late control gene D protein (GPD) RTT107_BRCT_6 PF16771.5 gi|344212577|ref|YP_004796897.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain PhzC-PhzF PF02567.16 gi|344212578|ref|YP_004796898.1| - 2.9e-36 125.4 0.6 3.3e-36 125.2 0.6 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|344212578|ref|YP_004796898.1| - 0.00013 22.2 0.5 0.00049 20.3 0.1 2.0 2 0 0 2 2 2 1 Diaminopimelate epimerase PPDK_N PF01326.19 gi|344212579|ref|YP_004796899.1| - 3.4e-106 355.2 0.1 5.2e-106 354.6 0.1 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|344212579|ref|YP_004796899.1| - 4.5e-80 268.9 0.0 6.5e-80 268.4 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|344212579|ref|YP_004796899.1| - 4.3e-30 103.3 2.5 1.8e-29 101.3 1.8 2.5 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain ATPase PF06745.13 gi|344212580|ref|YP_004796900.1| - 5.8e-06 25.8 0.2 0.022 14.1 0.3 2.4 3 0 0 3 3 3 2 KaiC MtrD PF04207.12 gi|344212580|ref|YP_004796900.1| - 0.15 11.8 0.4 0.23 11.1 0.4 1.2 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit D PFL-like PF02901.15 gi|344212580|ref|YP_004796900.1| - 0.29 9.7 0.0 0.45 9.1 0.0 1.2 1 0 0 1 1 1 0 Pyruvate formate lyase-like Pyridoxal_deC PF00282.19 gi|344212581|ref|YP_004796901.1| - 1.9e-24 86.1 0.0 7.1e-24 84.2 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|344212581|ref|YP_004796901.1| - 8.9e-09 34.8 0.0 1.3e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V THB PF18362.1 gi|344212581|ref|YP_004796901.1| - 0.14 11.7 0.0 1.5 8.5 0.0 2.6 3 0 0 3 3 3 0 Tri-helix bundle domain SNARE_assoc PF09335.11 gi|344212582|ref|YP_004796902.1| - 3e-10 40.6 4.2 7.8e-10 39.3 4.2 1.8 1 1 0 1 1 1 1 SNARE associated Golgi protein tRNA-synt_1g PF09334.11 gi|344212583|ref|YP_004796903.1| - 1.1e-135 452.4 0.1 5.1e-134 446.9 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|344212583|ref|YP_004796903.1| - 6.2e-22 77.5 0.0 1e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|344212583|ref|YP_004796903.1| - 3.5e-09 35.5 0.3 2.9e-06 25.8 0.1 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|344212583|ref|YP_004796903.1| - 6.7e-08 32.6 0.0 1.2e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|344212583|ref|YP_004796903.1| - 5.1e-06 26.1 0.0 0.00074 19.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.19 gi|344212583|ref|YP_004796903.1| - 0.023 13.7 0.0 0.1 11.6 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (R) HSCB_C PF07743.13 gi|344212583|ref|YP_004796903.1| - 0.28 11.7 4.7 23 5.6 2.1 3.1 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain NfeD PF01957.18 gi|344212585|ref|YP_004796905.1| - 2.3e-08 34.3 0.0 5e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Band_7 PF01145.25 gi|344212586|ref|YP_004796906.1| - 5.8e-41 140.5 3.0 1.1e-40 139.5 3.0 1.5 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|344212586|ref|YP_004796906.1| - 0.0069 16.1 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family SNN_transmemb PF09049.10 gi|344212586|ref|YP_004796906.1| - 1.2 9.1 3.2 2.7 8.0 3.2 1.5 1 0 0 1 1 1 0 Stannin transmembrane MarR_2 PF12802.7 gi|344212587|ref|YP_004796907.1| - 1e-10 41.3 0.6 1.7e-09 37.4 0.2 2.6 2 1 0 2 2 2 1 MarR family MarR PF01047.22 gi|344212587|ref|YP_004796907.1| - 6.3e-08 32.4 0.0 5.9e-07 29.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344212587|ref|YP_004796907.1| - 6.4e-08 32.3 0.2 1.4e-05 24.9 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|344212587|ref|YP_004796907.1| - 9.1e-08 31.9 0.0 1.7e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|344212587|ref|YP_004796907.1| - 1.3e-07 31.4 0.0 2.4e-05 24.1 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344212587|ref|YP_004796907.1| - 3.2e-06 27.1 2.0 4.3e-05 23.5 0.4 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344212587|ref|YP_004796907.1| - 8.8e-06 25.4 4.4 0.00034 20.3 0.1 2.9 2 1 1 3 3 3 2 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344212587|ref|YP_004796907.1| - 1.6e-05 24.8 0.0 4e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|344212587|ref|YP_004796907.1| - 2.5e-05 23.7 0.0 5.5e-05 22.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|344212587|ref|YP_004796907.1| - 0.00014 21.9 0.0 0.36 11.0 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain GntR PF00392.21 gi|344212587|ref|YP_004796907.1| - 0.00016 21.3 0.1 0.0018 17.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|344212587|ref|YP_004796907.1| - 0.002 18.3 0.0 0.0066 16.6 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|344212587|ref|YP_004796907.1| - 0.0049 17.2 0.0 0.023 15.0 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_29 PF13551.6 gi|344212587|ref|YP_004796907.1| - 0.008 16.2 0.0 0.039 14.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|344212587|ref|YP_004796907.1| - 0.018 14.8 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.6 gi|344212587|ref|YP_004796907.1| - 0.037 14.0 0.0 0.09 12.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|344212587|ref|YP_004796907.1| - 0.057 13.2 0.1 0.18 11.6 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_3 PF01381.22 gi|344212587|ref|YP_004796907.1| - 0.061 13.4 0.0 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix HTH_CodY PF08222.11 gi|344212587|ref|YP_004796907.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain PAS_3 PF08447.12 gi|344212588|ref|YP_004796908.1| - 9.6e-24 83.5 0.8 2.7e-13 50.0 0.0 3.1 3 0 0 3 3 3 2 PAS fold Response_reg PF00072.24 gi|344212588|ref|YP_004796908.1| - 3.9e-19 68.9 0.0 1e-18 67.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.7 gi|344212588|ref|YP_004796908.1| - 6.4e-17 61.7 0.6 8.7e-12 45.2 0.2 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|344212588|ref|YP_004796908.1| - 1e-15 57.9 1.3 1.8e-11 44.2 0.1 2.8 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|344212588|ref|YP_004796908.1| - 1.1e-14 54.9 0.1 1.2e-13 51.5 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344212588|ref|YP_004796908.1| - 1.7e-09 37.5 0.7 4.9e-09 36.1 0.7 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|344212588|ref|YP_004796908.1| - 8.8e-09 35.4 0.2 1.6e-06 28.1 0.1 2.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|344212588|ref|YP_004796908.1| - 0.00021 21.2 0.0 0.00069 19.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain LexA_DNA_bind PF01726.16 gi|344212589|ref|YP_004796909.1| - 0.0036 17.1 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Sigma54_CBD PF04963.13 gi|344212589|ref|YP_004796909.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain HTH_6 PF01418.17 gi|344212589|ref|YP_004796909.1| - 0.13 12.3 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_24 PF13412.6 gi|344212589|ref|YP_004796909.1| - 0.14 11.8 1.0 0.7 9.5 0.1 2.3 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding TRAM PF01938.20 gi|344212590|ref|YP_004796910.1| - 4e-14 52.3 2.5 7.8e-14 51.4 2.5 1.5 1 0 0 1 1 1 1 TRAM domain DUF4249 PF14054.6 gi|344212590|ref|YP_004796910.1| - 0.053 13.1 0.2 0.059 13.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) CxxCxxCC PF03692.15 gi|344212591|ref|YP_004796911.1| - 7.9e-12 45.7 0.2 2.5e-11 44.1 0.2 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Lactamase_B PF00753.27 gi|344212592|ref|YP_004796912.1| - 6e-14 52.5 9.0 9e-14 51.9 9.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|344212592|ref|YP_004796912.1| - 8.9e-05 22.4 0.4 0.00023 21.1 0.1 1.9 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain Gluconate_2-dh3 PF13618.6 gi|344212592|ref|YP_004796912.1| - 0.052 13.8 0.0 0.067 13.4 0.0 1.3 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 HTH_40 PF14493.6 gi|344212592|ref|YP_004796912.1| - 0.056 13.9 0.0 0.099 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|344212593|ref|YP_004796913.1| - 6.9e-08 31.9 0.0 1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|344212593|ref|YP_004796913.1| - 1.4e-05 24.9 0.1 1.8e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344212593|ref|YP_004796913.1| - 3.6e-05 23.8 0.3 8.4e-05 22.6 0.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|344212593|ref|YP_004796913.1| - 0.00061 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|344212593|ref|YP_004796913.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|344212593|ref|YP_004796913.1| - 0.0021 18.0 0.1 0.0094 15.9 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|344212593|ref|YP_004796913.1| - 0.0055 16.6 0.0 0.0072 16.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|344212593|ref|YP_004796913.1| - 0.0097 16.2 0.0 0.013 15.8 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.6 gi|344212593|ref|YP_004796913.1| - 0.01 15.7 0.0 0.054 13.5 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344212593|ref|YP_004796913.1| - 0.012 15.4 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344212593|ref|YP_004796913.1| - 0.018 15.0 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.17 gi|344212593|ref|YP_004796913.1| - 0.019 14.8 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.6 gi|344212593|ref|YP_004796913.1| - 0.023 15.2 0.0 0.03 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|344212593|ref|YP_004796913.1| - 0.023 14.5 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|344212593|ref|YP_004796913.1| - 0.086 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Replic_Relax PF13814.6 gi|344212593|ref|YP_004796913.1| - 0.12 12.4 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_11 PF08279.12 gi|344212593|ref|YP_004796913.1| - 0.18 11.8 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 HTH domain Methyltransf_25 PF13649.6 gi|344212594|ref|YP_004796914.1| - 3.9e-24 85.2 0.0 5.7e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344212594|ref|YP_004796914.1| - 9.4e-23 80.7 0.0 1.4e-22 80.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212594|ref|YP_004796914.1| - 1.5e-17 63.8 0.0 2.1e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344212594|ref|YP_004796914.1| - 1.6e-14 53.8 0.0 2.1e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|344212594|ref|YP_004796914.1| - 5.4e-14 52.4 0.0 6.8e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344212594|ref|YP_004796914.1| - 1.1e-12 48.5 0.0 1.6e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|344212594|ref|YP_004796914.1| - 1.4e-05 24.2 0.0 2e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) UPF0020 PF01170.18 gi|344212594|ref|YP_004796914.1| - 2.8e-05 23.9 0.0 6.1e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MetW PF07021.12 gi|344212594|ref|YP_004796914.1| - 0.00034 20.3 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|344212594|ref|YP_004796914.1| - 0.00036 20.1 0.0 0.00051 19.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|344212594|ref|YP_004796914.1| - 0.00075 18.9 0.0 0.00097 18.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|344212594|ref|YP_004796914.1| - 0.00077 18.6 0.0 0.00097 18.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|344212594|ref|YP_004796914.1| - 0.001 18.7 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_20 PF12147.8 gi|344212594|ref|YP_004796914.1| - 0.0012 18.0 0.0 0.0037 16.5 0.0 1.7 2 1 0 2 2 2 1 Putative methyltransferase NodS PF05401.11 gi|344212594|ref|YP_004796914.1| - 0.0014 18.3 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) tRNA_U5-meth_tr PF05958.11 gi|344212594|ref|YP_004796914.1| - 0.005 15.9 0.0 0.0093 15.0 0.0 1.4 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|344212594|ref|YP_004796914.1| - 0.013 15.0 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase FtsJ PF01728.19 gi|344212594|ref|YP_004796914.1| - 0.021 15.0 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase TehB PF03848.14 gi|344212594|ref|YP_004796914.1| - 0.024 14.0 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB TPMT PF05724.11 gi|344212594|ref|YP_004796914.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DUF938 PF06080.12 gi|344212594|ref|YP_004796914.1| - 0.15 11.8 0.0 0.55 10.0 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF938) Methyltransf_18 PF12847.7 gi|344212594|ref|YP_004796914.1| - 0.19 11.7 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|344212595|ref|YP_004796915.1| - 2.3e-12 47.0 0.1 5e-12 46.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344212595|ref|YP_004796915.1| - 0.00069 19.6 3.8 0.029 14.3 0.5 2.5 2 1 1 3 3 3 2 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344212595|ref|YP_004796915.1| - 0.079 12.4 0.1 0.14 11.6 0.0 1.4 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Amidohydro_2 PF04909.14 gi|344212596|ref|YP_004796916.1| - 2.3e-13 50.6 0.6 3.3e-13 50.1 0.6 1.2 1 0 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.24 gi|344212597|ref|YP_004796917.1| - 1e-144 482.8 20.3 1.2e-144 482.7 20.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF371 PF04027.13 gi|344212598|ref|YP_004796918.1| - 2.2e-54 183.0 1.4 2.4e-54 182.9 1.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Glyco_hydro_2 PF00703.21 gi|344212600|ref|YP_004796920.1| - 1.1e-06 29.2 0.1 2.5e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Cadherin-like PF12733.7 gi|344212600|ref|YP_004796920.1| - 1.5 9.4 5.5 18 5.9 0.1 3.1 3 0 0 3 3 3 0 Cadherin-like beta sandwich domain T3SSipB PF16535.5 gi|344212601|ref|YP_004796921.1| - 0.0063 17.0 11.4 0.0063 17.0 11.4 3.3 1 1 1 2 2 2 1 Type III cell invasion protein SipB Fez1 PF06818.15 gi|344212601|ref|YP_004796921.1| - 1.1 9.6 61.4 0.69 10.3 28.4 2.2 1 1 1 2 2 2 0 Fez1 Laminin_II PF06009.12 gi|344212601|ref|YP_004796921.1| - 2.5 8.1 37.7 0.47 10.5 12.1 3.6 1 1 1 3 3 3 0 Laminin Domain II Syntaxin_2 PF14523.6 gi|344212601|ref|YP_004796921.1| - 4 7.9 36.0 0.049 14.0 6.2 4.1 1 1 1 3 3 3 0 Syntaxin-like protein DUF3800 PF12686.7 gi|344212601|ref|YP_004796921.1| - 5.9 7.5 8.3 28 5.4 8.3 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) LysE PF01810.18 gi|344212602|ref|YP_004796922.1| - 4.3e-25 88.3 10.6 2.5e-23 82.6 10.6 2.1 1 1 0 1 1 1 1 LysE type translocator HD PF01966.22 gi|344212603|ref|YP_004796923.1| - 5.6e-18 65.3 2.7 7.2e-18 65.0 1.2 1.9 2 0 0 2 2 2 1 HD domain PAP2 PF01569.21 gi|344212604|ref|YP_004796924.1| - 0.029 14.1 0.4 0.036 13.8 0.4 1.1 1 0 0 1 1 1 0 PAP2 superfamily Acetyltransf_10 PF13673.7 gi|344212605|ref|YP_004796925.1| - 4.3e-11 42.8 0.0 6.5e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344212605|ref|YP_004796925.1| - 1.1e-10 41.7 0.0 2.7e-10 40.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344212605|ref|YP_004796925.1| - 3.7e-10 40.1 0.0 6e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|344212605|ref|YP_004796925.1| - 0.0025 17.9 0.0 0.031 14.3 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344212605|ref|YP_004796925.1| - 0.0034 17.3 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Zn-ribbon_8 PF09723.10 gi|344212605|ref|YP_004796925.1| - 0.024 14.7 1.0 0.041 14.0 1.0 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Acetyltransf_4 PF13420.7 gi|344212605|ref|YP_004796925.1| - 0.06 13.5 0.0 0.091 12.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|344212605|ref|YP_004796925.1| - 0.067 13.3 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344212605|ref|YP_004796925.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Fe_dep_repress PF01325.19 gi|344212606|ref|YP_004796926.1| - 6.2e-17 61.6 0.0 9.4e-17 61.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|344212606|ref|YP_004796926.1| - 1.6e-10 40.9 0.1 3.4e-10 39.8 0.0 1.5 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.6 gi|344212606|ref|YP_004796926.1| - 4.8e-06 27.0 0.0 1.4e-05 25.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|344212606|ref|YP_004796926.1| - 7.5e-05 22.2 0.0 0.00014 21.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|344212606|ref|YP_004796926.1| - 7.7e-05 22.6 0.0 0.00018 21.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|344212606|ref|YP_004796926.1| - 0.00018 21.3 0.0 0.00031 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|344212606|ref|YP_004796926.1| - 0.0011 18.9 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|344212606|ref|YP_004796926.1| - 0.0012 19.2 0.0 0.0018 18.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|344212606|ref|YP_004796926.1| - 0.0024 17.8 0.0 0.0041 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|344212606|ref|YP_004796926.1| - 0.031 14.1 0.0 0.083 12.7 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain FeoC PF09012.10 gi|344212606|ref|YP_004796926.1| - 0.044 13.9 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_IclR PF09339.10 gi|344212606|ref|YP_004796926.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|344212606|ref|YP_004796926.1| - 0.083 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Get5_C PF18514.1 gi|344212607|ref|YP_004796927.1| - 0.083 12.6 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 Get5 C-terminal domain Not3 PF04065.15 gi|344212607|ref|YP_004796927.1| - 0.11 11.9 2.0 0.15 11.5 1.4 1.5 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component DUF4226 PF10774.9 gi|344212607|ref|YP_004796927.1| - 0.37 11.1 4.7 2 8.7 2.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4226) UPF0051 PF01458.17 gi|344212608|ref|YP_004796928.1| - 4.2e-63 212.9 0.8 5.3e-63 212.6 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|344212609|ref|YP_004796929.1| - 6.4e-73 245.1 0.4 8.1e-73 244.7 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|344212610|ref|YP_004796930.1| - 6.4e-15 55.9 0.1 3.2e-14 53.6 0.1 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|344212610|ref|YP_004796930.1| - 7.3e-05 22.3 3.5 0.071 12.5 0.2 2.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|344212610|ref|YP_004796930.1| - 0.00016 22.1 0.1 0.16 12.4 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|344212610|ref|YP_004796930.1| - 0.00017 21.5 0.0 0.074 12.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344212610|ref|YP_004796930.1| - 0.0043 16.7 0.1 0.0082 15.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|344212610|ref|YP_004796930.1| - 0.0046 17.0 0.2 3.6 7.6 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|344212610|ref|YP_004796930.1| - 0.017 15.4 0.3 0.35 11.1 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|344212610|ref|YP_004796930.1| - 0.03 14.6 0.0 0.86 9.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|344212610|ref|YP_004796930.1| - 0.08 13.5 0.0 0.36 11.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|344212610|ref|YP_004796930.1| - 0.081 13.4 2.9 1 9.9 2.9 2.3 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|344212610|ref|YP_004796930.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 gi|344212610|ref|YP_004796930.1| - 0.13 11.9 0.9 0.49 10.0 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain DNA_pol_B PF00136.21 gi|344212611|ref|YP_004796931.1| - 4.3e-47 160.9 0.0 6.9e-47 160.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|344212611|ref|YP_004796931.1| - 7.8e-31 107.4 0.0 1.4e-30 106.6 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.13 gi|344212611|ref|YP_004796931.1| - 0.016 14.1 0.2 0.39 9.5 0.0 2.2 1 1 0 2 2 2 0 DNA polymerase type B, organellar and viral AAA_23 PF13476.6 gi|344212615|ref|YP_004796935.1| - 1.8e-20 74.3 11.9 1.8e-20 74.3 11.9 6.0 1 1 3 4 4 2 1 AAA domain Spc7 PF08317.11 gi|344212615|ref|YP_004796935.1| - 3.9e-08 32.5 121.9 0.00032 19.7 24.3 5.9 1 1 3 5 5 5 5 Spc7 kinetochore protein AAA_29 PF13555.6 gi|344212615|ref|YP_004796935.1| - 1.8e-07 30.8 0.0 3.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|344212615|ref|YP_004796935.1| - 2.4e-07 30.9 13.8 1.3e-05 25.1 0.9 3.4 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|344212615|ref|YP_004796935.1| - 2.4e-06 26.5 78.9 0.0053 15.5 26.9 5.4 2 1 2 4 4 4 2 AAA domain Atg14 PF10186.9 gi|344212615|ref|YP_004796935.1| - 5.1e-06 25.8 86.1 0.013 14.6 14.8 5.6 2 1 3 5 5 5 4 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_15 PF13175.6 gi|344212615|ref|YP_004796935.1| - 5.4e-05 23.1 52.2 2.1e+03 -1.9 52.2 4.7 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.19 gi|344212615|ref|YP_004796935.1| - 6.9e-05 22.4 64.8 0.0055 16.2 64.8 2.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CENP-F_leu_zip PF10473.9 gi|344212615|ref|YP_004796935.1| - 0.00013 22.0 20.8 0.00013 22.0 20.8 6.5 3 2 4 7 7 6 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rab5-bind PF09311.11 gi|344212615|ref|YP_004796935.1| - 0.00019 20.9 19.9 0.00019 20.9 19.9 5.9 2 1 3 5 5 5 1 Rabaptin-like protein TMF_TATA_bd PF12325.8 gi|344212615|ref|YP_004796935.1| - 0.00071 19.8 4.6 0.00071 19.8 4.6 8.6 2 2 5 8 8 8 3 TATA element modulatory factor 1 TATA binding GAS PF13851.6 gi|344212615|ref|YP_004796935.1| - 0.00082 18.8 19.2 0.00082 18.8 19.2 5.6 3 2 3 6 6 6 1 Growth-arrest specific micro-tubule binding Filament PF00038.21 gi|344212615|ref|YP_004796935.1| - 0.003 17.2 45.5 0.003 17.2 45.5 3.5 2 1 0 2 2 1 1 Intermediate filament protein Methyltransf_25 PF13649.6 gi|344212615|ref|YP_004796935.1| - 0.045 14.5 1.5 17 6.2 0.0 3.6 2 1 0 2 2 2 0 Methyltransferase domain AAA_16 PF13191.6 gi|344212615|ref|YP_004796935.1| - 0.14 12.6 0.0 0.14 12.6 0.0 5.8 2 1 0 2 2 1 0 AAA ATPase domain MukB PF04310.12 gi|344212615|ref|YP_004796935.1| - 0.2 11.4 0.0 0.2 11.4 0.0 3.9 3 1 1 4 4 4 0 MukB N-terminal ABC_tran PF00005.27 gi|344212615|ref|YP_004796935.1| - 0.22 12.0 0.0 0.22 12.0 0.0 5.8 2 1 0 2 2 1 0 ABC transporter DUF3450 PF11932.8 gi|344212615|ref|YP_004796935.1| - 0.83 8.9 104.4 0.15 11.4 10.2 7.2 2 2 3 6 6 6 0 Protein of unknown function (DUF3450) Metallophos_2 PF12850.7 gi|344212616|ref|YP_004796936.1| - 1.4e-11 44.9 0.3 3.2e-11 43.7 0.3 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344212616|ref|YP_004796936.1| - 1.1e-10 42.3 2.1 2.1e-10 41.5 2.0 1.6 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase TCO89 PF10452.9 gi|344212616|ref|YP_004796936.1| - 2.5 7.0 7.5 3.3 6.6 7.5 1.1 1 0 0 1 1 1 0 TORC1 subunit TCO89 XhlA PF10779.9 gi|344212619|ref|YP_004796939.1| - 0.00046 20.3 4.1 0.0013 18.9 0.3 2.7 2 1 1 3 3 3 1 Haemolysin XhlA Osmo_CC PF08946.10 gi|344212619|ref|YP_004796939.1| - 0.00052 20.2 0.8 0.0022 18.2 0.5 2.2 3 0 0 3 3 2 1 Osmosensory transporter coiled coil NPV_P10 PF05531.12 gi|344212619|ref|YP_004796939.1| - 0.00076 19.9 0.4 0.19 12.2 0.3 2.4 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|344212619|ref|YP_004796939.1| - 0.0014 18.9 0.3 0.0029 17.9 0.2 1.7 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1515 PF07439.11 gi|344212619|ref|YP_004796939.1| - 0.0022 18.0 1.6 0.014 15.4 1.5 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1515) Phage_GP20 PF06810.11 gi|344212619|ref|YP_004796939.1| - 0.027 14.3 0.2 0.034 13.9 0.2 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 ABC_tran_CTD PF16326.5 gi|344212619|ref|YP_004796939.1| - 0.041 14.1 5.6 0.14 12.4 1.4 2.9 1 1 2 3 3 3 0 ABC transporter C-terminal domain DUF4988 PF16378.5 gi|344212619|ref|YP_004796939.1| - 0.059 13.0 0.3 0.16 11.7 0.2 1.7 1 1 1 2 2 2 0 Domain of unknown function UPF0184 PF03670.13 gi|344212619|ref|YP_004796939.1| - 0.064 13.7 2.8 0.22 11.9 0.3 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) DUF2802 PF10975.8 gi|344212619|ref|YP_004796939.1| - 0.07 13.3 0.5 0.33 11.1 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) DUF1664 PF07889.12 gi|344212619|ref|YP_004796939.1| - 0.075 13.1 0.3 0.12 12.4 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2205 PF10224.9 gi|344212619|ref|YP_004796939.1| - 0.088 12.8 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Short coiled-coil protein Spc7 PF08317.11 gi|344212619|ref|YP_004796939.1| - 0.11 11.3 1.0 0.14 11.0 1.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF5082 PF16888.5 gi|344212619|ref|YP_004796939.1| - 0.15 12.3 0.7 0.25 11.6 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) TolA_bind_tri PF16331.5 gi|344212619|ref|YP_004796939.1| - 0.18 11.9 1.5 0.22 11.6 0.4 1.8 2 0 0 2 2 2 0 TolA binding protein trimerisation TBK1_CCD1 PF18394.1 gi|344212619|ref|YP_004796939.1| - 0.21 11.1 0.1 0.26 10.8 0.1 1.1 1 0 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 T3SSipB PF16535.5 gi|344212619|ref|YP_004796939.1| - 0.46 11.0 3.7 1.9 9.0 4.0 1.7 1 1 1 2 2 2 0 Type III cell invasion protein SipB ABM PF03992.16 gi|344212620|ref|YP_004796940.1| - 0.065 13.4 0.0 0.099 12.8 0.0 1.4 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase T2SSE PF00437.20 gi|344212621|ref|YP_004796941.1| - 1.7e-32 112.6 0.0 2.6e-32 112.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|344212621|ref|YP_004796941.1| - 4.4e-05 23.9 0.5 4.4e-05 23.9 0.5 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344212621|ref|YP_004796941.1| - 0.057 13.2 0.1 0.18 11.6 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|344212621|ref|YP_004796941.1| - 0.11 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF2850 PF11012.8 gi|344212623|ref|YP_004796943.1| - 0.012 15.8 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2850) SBP_bac_3 PF00497.20 gi|344212625|ref|YP_004796945.1| - 0.2 11.0 0.8 0.25 10.7 0.7 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 DUF1400 PF07176.11 gi|344212627|ref|YP_004796947.1| - 0.013 15.8 0.0 0.022 15.0 0.0 1.4 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) NAD_binding_10 PF13460.6 gi|344212628|ref|YP_004796948.1| - 8.6e-10 38.8 0.0 1.3e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding TrkA_N PF02254.18 gi|344212628|ref|YP_004796948.1| - 2.2e-08 34.4 0.0 6.2e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain Epimerase PF01370.21 gi|344212628|ref|YP_004796948.1| - 3.8e-07 29.8 0.0 5.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344212628|ref|YP_004796948.1| - 0.00044 19.3 0.0 0.001 18.1 0.0 1.6 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1731 PF08338.11 gi|344212628|ref|YP_004796948.1| - 0.00056 19.7 0.0 0.0013 18.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) ApbA PF02558.16 gi|344212628|ref|YP_004796948.1| - 0.002 17.8 0.0 0.0059 16.3 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|344212628|ref|YP_004796948.1| - 0.0053 17.3 0.0 0.013 16.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|344212628|ref|YP_004796948.1| - 0.02 14.5 0.0 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344212628|ref|YP_004796948.1| - 0.15 12.4 0.0 0.25 11.6 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DHH PF01368.20 gi|344212629|ref|YP_004796949.1| - 1.6e-11 44.3 0.0 2.4e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|344212629|ref|YP_004796949.1| - 7.9e-10 39.3 0.7 1.5e-09 38.4 0.7 1.4 1 0 0 1 1 1 1 DHHA1 domain Aldo_ket_red PF00248.21 gi|344212630|ref|YP_004796950.1| - 3.5e-32 111.8 0.0 1.9e-25 89.7 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family DUF2322 PF10084.9 gi|344212630|ref|YP_004796950.1| - 0.068 13.2 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) DUF1451 PF07295.11 gi|344212631|ref|YP_004796951.1| - 0.0074 16.3 0.1 0.0084 16.2 0.1 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain FYVE PF01363.21 gi|344212631|ref|YP_004796951.1| - 0.0075 16.4 0.2 0.0092 16.1 0.2 1.1 1 0 0 1 1 1 1 FYVE zinc finger zf-TFIIB PF13453.6 gi|344212631|ref|YP_004796951.1| - 0.031 13.6 2.9 0.06 12.7 2.9 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|344212631|ref|YP_004796951.1| - 0.032 14.2 0.2 0.039 13.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|344212631|ref|YP_004796951.1| - 0.057 13.3 1.2 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_9 PF14369.6 gi|344212631|ref|YP_004796951.1| - 0.083 13.2 3.5 0.3 11.4 3.7 1.7 1 1 1 2 2 2 0 zinc-ribbon Prok-RING_1 PF14446.6 gi|344212631|ref|YP_004796951.1| - 0.2 11.6 3.8 0.34 10.9 3.8 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Anti-TRAP PF15777.5 gi|344212631|ref|YP_004796951.1| - 0.23 11.5 2.3 2.2 8.3 2.8 1.9 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-ACC PF17848.1 gi|344212631|ref|YP_004796951.1| - 7.9 6.7 8.5 18 5.5 0.1 2.5 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain MFS_1 PF07690.16 gi|344212632|ref|YP_004796952.1| - 7.7e-27 94.1 51.7 6.2e-24 84.6 33.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344212632|ref|YP_004796952.1| - 0.0022 17.0 5.3 0.0022 17.0 5.3 2.1 1 1 0 2 2 2 1 MFS_1 like family DUF1616 PF07760.11 gi|344212632|ref|YP_004796952.1| - 0.11 11.9 0.2 0.11 11.9 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) Phage-tail_1 PF09097.10 gi|344212632|ref|YP_004796952.1| - 0.18 11.6 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Baseplate structural protein, domain 1 NUDIX PF00293.28 gi|344212634|ref|YP_004796954.1| - 4.8e-13 49.3 0.1 8e-13 48.6 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain Ribosomal_L3 PF00297.22 gi|344212634|ref|YP_004796954.1| - 0.21 10.5 0.0 7.2 5.5 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein L3 Bac_luciferase PF00296.20 gi|344212635|ref|YP_004796955.1| - 0.0033 16.9 0.7 0.0053 16.2 0.4 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.24 gi|344212636|ref|YP_004796956.1| - 2.1e-53 182.2 8.7 2.6e-53 181.8 8.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|344212636|ref|YP_004796956.1| - 4.2e-06 26.2 2.4 0.00017 20.9 0.7 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|344212636|ref|YP_004796956.1| - 8.6e-06 25.2 2.2 5.8e-05 22.5 1.4 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344212636|ref|YP_004796956.1| - 4.2e-05 23.7 5.3 0.00012 22.2 4.6 2.1 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|344212636|ref|YP_004796956.1| - 4.8e-05 22.3 1.8 0.0021 16.8 1.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|344212636|ref|YP_004796956.1| - 6.4e-05 23.4 1.3 0.00015 22.2 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344212636|ref|YP_004796956.1| - 6.5e-05 22.2 6.0 0.00011 21.4 6.0 1.5 1 1 0 1 1 1 1 FAD binding domain NAD_binding_7 PF13241.6 gi|344212636|ref|YP_004796956.1| - 0.00071 20.0 0.0 0.0018 18.6 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.16 gi|344212636|ref|YP_004796956.1| - 0.0029 17.3 1.0 0.035 13.7 0.5 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|344212636|ref|YP_004796956.1| - 0.01 15.1 0.1 0.016 14.5 0.1 1.4 1 0 0 1 1 1 0 Thi4 family Pyr_redox_3 PF13738.6 gi|344212636|ref|YP_004796956.1| - 0.011 15.1 0.8 0.039 13.2 0.3 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|344212636|ref|YP_004796956.1| - 0.015 14.6 1.9 2.6 7.2 0.1 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|344212636|ref|YP_004796956.1| - 0.018 14.9 0.4 0.044 13.7 0.4 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|344212636|ref|YP_004796956.1| - 0.03 13.9 0.2 0.057 13.0 0.2 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|344212636|ref|YP_004796956.1| - 0.035 13.4 0.8 0.066 12.5 0.8 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|344212636|ref|YP_004796956.1| - 0.039 13.9 1.9 0.18 11.8 0.4 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|344212636|ref|YP_004796956.1| - 0.056 12.8 3.6 0.068 12.5 3.6 1.3 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|344212636|ref|YP_004796956.1| - 0.085 12.8 0.2 0.15 12.0 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Trp_halogenase PF04820.14 gi|344212636|ref|YP_004796956.1| - 0.11 11.3 1.5 0.17 10.7 1.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.22 gi|344212636|ref|YP_004796956.1| - 0.82 8.7 3.5 0.84 8.6 2.6 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A HSP20 PF00011.21 gi|344212637|ref|YP_004796957.1| - 5.1e-09 36.2 0.0 1e-08 35.2 0.0 1.6 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|344212637|ref|YP_004796957.1| - 0.042 13.4 0.1 0.17 11.5 0.1 2.0 1 1 0 1 1 1 0 HSP20-like domain found in ArsA zf-Di19 PF05605.12 gi|344212638|ref|YP_004796958.1| - 0.13 12.6 2.0 0.13 12.5 0.4 1.8 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF429 PF04250.13 gi|344212639|ref|YP_004796959.1| - 7.5e-10 38.9 1.6 1e-09 38.5 1.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF429) MDMPI_N PF11716.8 gi|344212639|ref|YP_004796959.1| - 0.22 12.2 4.5 0.088 13.5 0.9 2.1 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain ABC_membrane PF00664.23 gi|344212640|ref|YP_004796960.1| - 2.6e-37 129.0 0.8 3.6e-37 128.5 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|344212640|ref|YP_004796960.1| - 1.2e-31 110.1 0.0 2.2e-31 109.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|344212640|ref|YP_004796960.1| - 0.0002 20.9 0.0 0.0014 18.1 0.0 1.4 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|344212640|ref|YP_004796960.1| - 0.00033 20.0 0.1 0.00094 18.5 0.1 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|344212640|ref|YP_004796960.1| - 0.02 14.6 0.1 0.052 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|344212640|ref|YP_004796960.1| - 0.041 13.1 0.0 1.7 7.8 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain AAA_25 PF13481.6 gi|344212640|ref|YP_004796960.1| - 0.05 13.2 1.1 0.2 11.2 0.0 2.4 3 0 0 3 3 3 0 AAA domain SLATT_1 PF18181.1 gi|344212640|ref|YP_004796960.1| - 0.055 13.4 0.2 0.74 9.8 0.1 2.5 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 AAA_22 PF13401.6 gi|344212640|ref|YP_004796960.1| - 0.064 13.5 0.4 1.5 9.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|344212640|ref|YP_004796960.1| - 0.099 12.4 0.1 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344212640|ref|YP_004796960.1| - 2.1 8.7 7.1 5.5 7.3 5.1 2.7 2 1 0 2 2 2 0 AAA ATPase domain Na_H_antiporter PF03553.14 gi|344212641|ref|YP_004796961.1| - 6.3e-61 206.2 34.3 3.1e-54 184.3 16.2 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family PALP PF00291.25 gi|344212642|ref|YP_004796962.1| - 0.056 12.8 0.1 0.06 12.8 0.1 1.1 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Radical_SAM PF04055.21 gi|344212643|ref|YP_004796963.1| - 2.5e-15 57.3 0.0 3.3e-14 53.6 0.0 2.5 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|344212643|ref|YP_004796963.1| - 1.8e-05 24.4 0.0 5.9e-05 22.7 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|344212643|ref|YP_004796963.1| - 0.00011 22.4 0.0 0.00026 21.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|344212643|ref|YP_004796963.1| - 0.0016 18.4 0.1 0.0059 16.6 0.0 2.0 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.6 gi|344212643|ref|YP_004796963.1| - 0.052 14.2 0.0 0.14 12.8 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|344212643|ref|YP_004796963.1| - 0.074 13.2 0.0 0.36 11.0 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|344212643|ref|YP_004796963.1| - 0.13 12.5 0.0 1.9 8.8 0.0 2.7 3 0 0 3 3 3 0 Pathogenicity locus LPG_synthase_TM PF03706.13 gi|344212644|ref|YP_004796964.1| - 2e-34 119.5 34.9 2.7e-34 119.1 34.9 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|344212644|ref|YP_004796964.1| - 4.8e-26 91.6 0.1 7.2e-26 91.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344212644|ref|YP_004796964.1| - 3.9e-08 33.5 0.0 8.2e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344212644|ref|YP_004796964.1| - 0.0017 17.9 0.0 0.0025 17.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|344212644|ref|YP_004796964.1| - 0.0066 16.9 0.1 0.012 16.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF726 PF05277.12 gi|344212645|ref|YP_004796965.1| - 6.7e-10 38.4 0.0 1.3e-09 37.5 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF726) DUF900 PF05990.12 gi|344212645|ref|YP_004796965.1| - 1.6e-07 31.1 0.0 2e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Thioesterase PF00975.20 gi|344212645|ref|YP_004796965.1| - 0.00014 22.1 0.0 0.00026 21.2 0.0 1.5 1 0 0 1 1 1 1 Thioesterase domain LCAT PF02450.15 gi|344212645|ref|YP_004796965.1| - 0.0017 17.6 0.0 0.0025 17.0 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase Lipase_3 PF01764.25 gi|344212645|ref|YP_004796965.1| - 0.0036 17.2 0.1 0.011 15.6 0.1 2.0 1 1 0 1 1 1 1 Lipase (class 3) PGAP1 PF07819.13 gi|344212645|ref|YP_004796965.1| - 0.011 15.5 0.0 0.04 13.6 0.0 1.7 1 1 0 1 1 1 0 PGAP1-like protein Abhydrolase_6 PF12697.7 gi|344212645|ref|YP_004796965.1| - 0.016 15.8 0.8 0.041 14.5 0.8 1.6 1 1 0 1 1 1 0 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|344212645|ref|YP_004796965.1| - 0.09 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase LIDHydrolase PF10230.9 gi|344212645|ref|YP_004796965.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 Lipid-droplet associated hydrolase Lipase PF00151.19 gi|344212645|ref|YP_004796965.1| - 0.13 11.5 0.0 0.29 10.4 0.0 1.5 1 1 0 1 1 1 0 Lipase TFIIB PF00382.19 gi|344212646|ref|YP_004796966.1| - 6e-39 131.9 0.7 1.2e-18 66.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344212646|ref|YP_004796966.1| - 1.7e-15 56.2 4.5 2.2e-15 55.9 3.5 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|344212646|ref|YP_004796966.1| - 0.054 13.0 2.8 0.31 10.6 0.0 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 Cyclin_C PF02984.19 gi|344212646|ref|YP_004796966.1| - 0.062 13.4 0.0 0.82 9.8 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain Anti-TRAP PF15777.5 gi|344212646|ref|YP_004796966.1| - 0.063 13.2 0.5 0.11 12.4 0.5 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein HTH_Tnp_ISL3 PF13542.6 gi|344212646|ref|YP_004796966.1| - 0.13 11.7 1.1 0.29 10.6 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 A2L_zn_ribbon PF08792.10 gi|344212646|ref|YP_004796966.1| - 0.15 11.8 0.7 0.28 10.9 0.7 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344212646|ref|YP_004796966.1| - 0.2 11.6 1.2 0.43 10.5 1.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|344212646|ref|YP_004796966.1| - 2.4 8.3 6.2 5.5 7.2 1.2 2.4 1 1 2 3 3 3 0 Zinc ribbon domain Nop25 PF09805.9 gi|344212646|ref|YP_004796966.1| - 3.6 8.1 8.1 2.2 8.8 0.2 2.7 3 0 0 3 3 3 0 Nucleolar protein 12 (25kDa) N6_N4_Mtase PF01555.18 gi|344212647|ref|YP_004796967.1| - 7.2e-31 107.7 0.0 9.5e-31 107.3 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|344212647|ref|YP_004796967.1| - 2.4e-06 28.1 0.1 0.38 11.4 0.0 3.3 3 0 0 3 3 3 2 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344212647|ref|YP_004796967.1| - 0.0001 22.9 0.1 0.86 10.4 0.0 3.8 3 1 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.18 gi|344212647|ref|YP_004796967.1| - 0.0011 18.7 0.1 1.4 8.6 0.0 2.4 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 CHB_HEX_C_1 PF13290.6 gi|344212647|ref|YP_004796967.1| - 0.15 12.1 0.1 0.72 9.9 0.1 1.9 2 0 0 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain DHquinase_I PF01487.15 gi|344212648|ref|YP_004796968.1| - 2.1e-43 149.2 0.0 2.4e-43 149.0 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase zinc_ribbon_2 PF13240.6 gi|344212649|ref|YP_004796969.1| - 1.3e-05 24.7 1.0 2e-05 24.1 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TM2 PF05154.16 gi|344212649|ref|YP_004796969.1| - 1.9e-05 24.9 5.7 2.8e-05 24.3 5.7 1.3 1 0 0 1 1 1 1 TM2 domain DZR PF12773.7 gi|344212649|ref|YP_004796969.1| - 2e-05 24.5 1.7 2.8e-05 24.1 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|344212649|ref|YP_004796969.1| - 0.00095 18.5 1.0 0.0015 17.8 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|344212649|ref|YP_004796969.1| - 0.002 18.8 0.2 0.0027 18.4 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbon family DUF4131 PF13567.6 gi|344212649|ref|YP_004796969.1| - 0.012 15.3 0.2 0.014 15.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF2614 PF11023.8 gi|344212649|ref|YP_004796969.1| - 0.014 15.5 0.8 0.27 11.3 0.0 2.1 2 0 0 2 2 2 0 Zinc-ribbon containing domain DUF2628 PF10947.8 gi|344212649|ref|YP_004796969.1| - 0.024 15.0 3.4 0.033 14.5 3.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) NinF PF05810.12 gi|344212649|ref|YP_004796969.1| - 0.056 13.3 0.2 0.12 12.2 0.2 1.6 1 1 0 1 1 1 0 NinF protein UPF0547 PF10571.9 gi|344212649|ref|YP_004796969.1| - 0.06 13.4 0.4 0.1 12.7 0.4 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc-ribbons_6 PF07191.12 gi|344212649|ref|YP_004796969.1| - 0.1 12.6 1.2 0.15 12.1 1.2 1.2 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|344212649|ref|YP_004796969.1| - 0.11 12.6 1.3 0.15 12.1 1.3 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DHQS PF01959.16 gi|344212650|ref|YP_004796970.1| - 2.9e-143 477.1 1.7 3.2e-143 476.9 1.7 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II Hint PF01079.20 gi|344212650|ref|YP_004796970.1| - 0.001 18.7 0.0 0.021 14.3 0.0 2.2 2 0 0 2 2 2 1 Hint module Hint_2 PF13403.6 gi|344212650|ref|YP_004796970.1| - 0.014 15.7 1.6 2.2 8.6 0.0 2.8 3 0 0 3 3 3 0 Hint domain QRPTase_C PF01729.19 gi|344212650|ref|YP_004796970.1| - 0.019 14.8 0.7 0.042 13.6 0.2 1.9 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain DeoC PF01791.9 gi|344212651|ref|YP_004796971.1| - 4.3e-49 167.3 0.1 5.4e-49 166.9 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|344212651|ref|YP_004796971.1| - 4.5e-05 23.0 0.1 8.6e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.24 gi|344212651|ref|YP_004796971.1| - 0.0042 16.7 0.3 0.0042 16.7 0.3 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.17 gi|344212651|ref|YP_004796971.1| - 0.011 15.1 0.1 1.1 8.5 0.0 2.6 2 1 0 2 2 2 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|344212651|ref|YP_004796971.1| - 0.012 14.8 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF561) PucR PF07905.11 gi|344212651|ref|YP_004796971.1| - 0.026 14.8 0.0 0.9 9.8 0.0 2.3 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family ThiG PF05690.14 gi|344212651|ref|YP_004796971.1| - 0.036 13.4 0.6 0.079 12.3 0.2 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG RuvA_C PF07499.13 gi|344212651|ref|YP_004796971.1| - 0.064 13.7 1.8 0.28 11.6 0.8 2.5 2 0 0 2 2 2 0 RuvA, C-terminal domain Trp_syntA PF00290.20 gi|344212652|ref|YP_004796972.1| - 1.1e-86 289.8 0.1 4.8e-86 287.8 0.1 1.7 1 1 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|344212652|ref|YP_004796972.1| - 0.00019 21.0 0.1 0.00038 20.0 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|344212652|ref|YP_004796972.1| - 0.00023 20.7 0.3 0.0055 16.2 0.3 2.1 2 0 0 2 2 2 1 PcrB family NanE PF04131.14 gi|344212652|ref|YP_004796972.1| - 0.14 11.4 0.1 0.71 9.0 0.0 2.0 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|344212652|ref|YP_004796972.1| - 0.21 10.7 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PALP PF00291.25 gi|344212653|ref|YP_004796973.1| - 2.2e-37 129.1 0.2 3e-37 128.6 0.2 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|344212654|ref|YP_004796974.1| - 7.7e-69 231.7 0.0 8.4e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|344212654|ref|YP_004796974.1| - 1.4e-05 24.9 0.1 2.7e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|344212654|ref|YP_004796974.1| - 2.7e-05 23.5 0.4 6.2e-05 22.3 0.4 1.7 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|344212654|ref|YP_004796974.1| - 0.00018 20.7 2.7 0.00024 20.3 1.9 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|344212654|ref|YP_004796974.1| - 0.0012 18.4 0.1 0.0071 15.8 0.1 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|344212654|ref|YP_004796974.1| - 0.0022 17.4 5.6 0.13 11.5 0.5 3.5 1 1 3 4 4 4 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|344212654|ref|YP_004796974.1| - 0.0096 15.3 6.1 0.07 12.5 4.1 2.2 2 1 0 2 2 2 1 Nitronate monooxygenase IMPDH PF00478.25 gi|344212654|ref|YP_004796974.1| - 0.022 13.8 0.4 0.092 11.7 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain PDZ PF00595.24 gi|344212654|ref|YP_004796974.1| - 0.042 14.2 0.1 0.14 12.5 0.0 1.8 2 0 0 2 2 2 0 PDZ domain DHO_dh PF01180.21 gi|344212654|ref|YP_004796974.1| - 0.045 13.0 0.1 0.066 12.4 0.1 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF2064 PF09837.9 gi|344212654|ref|YP_004796974.1| - 0.26 11.1 2.0 4.5 7.1 0.2 2.7 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2064) Acetyltransf_1 PF00583.25 gi|344212655|ref|YP_004796975.1| - 2.7e-10 40.5 0.0 3.8e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344212655|ref|YP_004796975.1| - 6.2e-09 35.9 0.0 8e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344212655|ref|YP_004796975.1| - 1.9e-07 31.4 0.0 2.7e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344212655|ref|YP_004796975.1| - 0.001 19.8 0.0 0.0012 19.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|344212655|ref|YP_004796975.1| - 0.05 13.7 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MMR_HSR1_C PF08438.10 gi|344212656|ref|YP_004796976.1| - 7.3e-28 97.4 0.0 1.2e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|344212656|ref|YP_004796976.1| - 1.2e-19 70.4 0.0 9.1e-19 67.6 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|344212656|ref|YP_004796976.1| - 8.3e-10 38.6 0.0 1.9e-09 37.4 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|344212656|ref|YP_004796976.1| - 2.5e-05 23.8 0.0 0.00017 21.2 0.0 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B PhetRS_B1 PF18262.1 gi|344212656|ref|YP_004796976.1| - 0.087 13.1 0.2 0.3 11.3 0.1 1.9 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain YchF-GTPase_C PF06071.13 gi|344212656|ref|YP_004796976.1| - 0.12 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF933) DUF5331 PF17265.2 gi|344212656|ref|YP_004796976.1| - 0.13 12.0 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5331) MeaB PF03308.16 gi|344212656|ref|YP_004796976.1| - 0.15 11.0 0.0 0.24 10.3 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Dynamin_N PF00350.23 gi|344212656|ref|YP_004796976.1| - 0.22 11.6 0.0 1 9.4 0.0 2.0 2 0 0 2 2 2 0 Dynamin family MCPsignal PF00015.21 gi|344212657|ref|YP_004796977.1| - 1.8e-40 138.6 54.5 4.7e-40 137.2 24.1 4.7 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2892 PF11127.8 gi|344212657|ref|YP_004796977.1| - 7.3e-05 22.7 3.2 0.00017 21.6 3.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) BLOC1_2 PF10046.9 gi|344212657|ref|YP_004796977.1| - 0.0013 19.0 24.1 3.1 8.1 1.0 6.1 4 3 2 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 T3SSipB PF16535.5 gi|344212657|ref|YP_004796977.1| - 0.0013 19.2 39.1 0.084 13.4 15.2 3.7 3 1 0 3 3 3 2 Type III cell invasion protein SipB DUF948 PF06103.11 gi|344212657|ref|YP_004796977.1| - 0.0062 16.8 39.0 1.6 9.0 3.6 6.8 3 2 4 7 7 7 3 Bacterial protein of unknown function (DUF948) 23S_rRNA_IVP PF05635.11 gi|344212657|ref|YP_004796977.1| - 0.01 16.1 6.0 0.028 14.7 1.4 2.9 2 1 0 2 2 2 0 23S rRNA-intervening sequence protein YscO PF07321.12 gi|344212657|ref|YP_004796977.1| - 0.011 15.6 7.8 0.011 15.6 7.8 3.3 3 1 0 3 3 3 0 Type III secretion protein YscO Alanine_zipper PF11839.8 gi|344212657|ref|YP_004796977.1| - 0.028 14.8 12.7 0.028 14.8 12.7 6.0 3 2 3 6 6 5 0 Alanine-zipper, major outer membrane lipoprotein HAMP PF00672.25 gi|344212657|ref|YP_004796977.1| - 0.038 14.4 12.7 3.5 8.1 0.1 4.9 5 0 0 5 5 3 0 HAMP domain RPW8 PF05659.11 gi|344212657|ref|YP_004796977.1| - 0.18 11.5 7.4 20 4.9 0.1 4.8 3 2 3 6 6 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 COQ9 PF08511.11 gi|344212657|ref|YP_004796977.1| - 0.19 11.5 5.0 0.22 11.3 0.3 3.4 3 0 0 3 3 3 0 COQ9 DUF775 PF05603.12 gi|344212657|ref|YP_004796977.1| - 0.25 10.8 0.0 0.25 10.8 0.0 2.5 2 1 0 2 2 1 0 Protein of unknown function (DUF775) APG17 PF04108.12 gi|344212657|ref|YP_004796977.1| - 0.31 10.1 31.1 0.16 11.1 0.1 4.8 3 1 1 5 5 5 0 Autophagy protein Apg17 Med9 PF07544.13 gi|344212657|ref|YP_004796977.1| - 0.33 11.1 12.1 0.31 11.1 0.5 4.5 3 1 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Fib_alpha PF08702.10 gi|344212657|ref|YP_004796977.1| - 0.49 10.6 18.0 3.8 7.7 2.2 4.7 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family EzrA PF06160.12 gi|344212657|ref|YP_004796977.1| - 0.73 7.9 19.2 0.036 12.3 3.1 3.3 1 1 0 3 3 3 0 Septation ring formation regulator, EzrA BORCS8 PF10167.9 gi|344212657|ref|YP_004796977.1| - 0.75 9.8 8.1 15 5.6 0.1 4.4 3 2 1 5 5 4 0 BLOC-1-related complex sub-unit 8 Spc7 PF08317.11 gi|344212657|ref|YP_004796977.1| - 0.78 8.6 27.4 0.67 8.8 7.7 3.2 1 1 2 3 3 3 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.12 gi|344212657|ref|YP_004796977.1| - 0.8 9.7 26.9 0.28 11.2 2.2 4.4 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|344212657|ref|YP_004796977.1| - 0.84 9.6 33.2 0.42 10.6 3.5 5.7 1 1 7 8 8 8 0 Laminin Domain II ERM PF00769.19 gi|344212657|ref|YP_004796977.1| - 0.94 9.2 0.0 0.94 9.2 0.0 3.4 1 1 2 4 4 4 0 Ezrin/radixin/moesin family DUF489 PF04356.12 gi|344212657|ref|YP_004796977.1| - 1 9.3 6.4 3.1 7.8 0.4 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF489) DUF724 PF05266.14 gi|344212657|ref|YP_004796977.1| - 1.2 8.9 13.2 4 7.2 3.0 3.2 2 1 2 4 4 4 0 Protein of unknown function (DUF724) CclA_1 PF16942.5 gi|344212657|ref|YP_004796977.1| - 1.3 9.4 4.4 0.39 11.0 0.3 2.3 2 0 0 2 2 1 0 Putative cyclic bacteriocin AAA_13 PF13166.6 gi|344212657|ref|YP_004796977.1| - 1.4 7.5 22.6 0.48 9.0 6.3 2.2 1 1 1 2 2 2 0 AAA domain ClpS PF02617.17 gi|344212657|ref|YP_004796977.1| - 1.5 8.7 6.8 0.16 11.8 0.2 2.9 3 0 0 3 3 2 0 ATP-dependent Clp protease adaptor protein ClpS DHR10 PF18595.1 gi|344212657|ref|YP_004796977.1| - 1.7 8.7 29.5 0.51 10.4 6.2 4.6 3 2 1 4 4 4 0 Designed helical repeat protein 10 domain TPR_MLP1_2 PF07926.12 gi|344212657|ref|YP_004796977.1| - 2.4 8.3 39.4 2.4 8.2 5.8 4.7 2 1 4 6 6 6 0 TPR/MLP1/MLP2-like protein TMPIT PF07851.13 gi|344212657|ref|YP_004796977.1| - 2.6 7.2 11.8 1.6 7.9 1.8 3.5 2 1 2 4 4 4 0 TMPIT-like protein ZapB PF06005.12 gi|344212657|ref|YP_004796977.1| - 3 8.4 10.0 28 5.2 3.7 3.8 2 1 0 2 2 2 0 Cell division protein ZapB Syntaxin_2 PF14523.6 gi|344212657|ref|YP_004796977.1| - 3.3 8.1 13.4 7.1 7.1 2.7 4.5 3 2 2 5 5 5 0 Syntaxin-like protein YtxH PF12732.7 gi|344212657|ref|YP_004796977.1| - 4.2 8.0 32.1 19 5.8 4.2 5.9 3 2 1 4 4 4 0 YtxH-like protein DUF16 PF01519.16 gi|344212657|ref|YP_004796977.1| - 4.5 7.8 14.4 53 4.4 0.0 4.8 2 1 1 3 3 2 0 Protein of unknown function DUF16 DUF2203 PF09969.9 gi|344212657|ref|YP_004796977.1| - 4.7 8.0 22.5 3.9 8.2 2.7 4.6 2 1 4 6 6 6 0 Uncharacterized conserved protein (DUF2203) PIN_8 PF18476.1 gi|344212657|ref|YP_004796977.1| - 6.7 6.5 17.0 6.9 6.5 4.5 3.3 2 1 1 3 3 3 0 PIN like domain Atg14 PF10186.9 gi|344212657|ref|YP_004796977.1| - 7.6 5.5 12.4 1.2 8.1 0.5 2.7 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1949 PF09186.11 gi|344212658|ref|YP_004796978.1| - 0.099 12.5 0.2 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) Thioredoxin_4 PF13462.6 gi|344212660|ref|YP_004796980.1| - 3.5e-14 53.3 0.0 4.4e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344212660|ref|YP_004796980.1| - 7e-06 26.4 0.1 9.4e-05 22.8 0.1 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|344212660|ref|YP_004796980.1| - 0.00012 22.0 0.2 0.00019 21.3 0.2 1.3 1 0 0 1 1 1 1 DSBA-like thioredoxin domain TAT_signal PF10518.9 gi|344212660|ref|YP_004796980.1| - 0.042 13.7 0.3 0.085 12.7 0.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Thioredoxin_5 PF13743.6 gi|344212660|ref|YP_004796980.1| - 0.077 12.7 0.8 0.17 11.5 0.1 1.8 2 0 0 2 2 2 0 Thioredoxin DUF1376 PF07120.11 gi|344212660|ref|YP_004796980.1| - 0.1 12.9 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1376) Thioredoxin_7 PF13899.6 gi|344212660|ref|YP_004796980.1| - 0.16 12.2 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like UCR_Fe-S_N PF10399.9 gi|344212660|ref|YP_004796980.1| - 0.19 11.1 1.7 0.34 10.3 1.7 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RHH_1 PF01402.21 gi|344212661|ref|YP_004796981.1| - 0.013 15.4 1.7 0.046 13.7 1.3 2.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family YpzI PF14140.6 gi|344212661|ref|YP_004796981.1| - 0.084 12.7 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 YpzI-like protein zf-HC2 PF13490.6 gi|344212661|ref|YP_004796981.1| - 0.097 12.9 0.3 0.097 12.9 0.3 2.3 2 0 0 2 2 2 0 Putative zinc-finger PSK_trans_fac PF07704.11 gi|344212661|ref|YP_004796981.1| - 0.17 12.6 3.6 0.25 12.1 3.6 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor PIN_4 PF13638.6 gi|344212662|ref|YP_004796982.1| - 0.097 13.0 0.2 5.1 7.4 0.0 2.2 1 1 1 2 2 2 0 PIN domain OpuAC PF04069.12 gi|344212663|ref|YP_004796983.1| - 1.9e-39 135.8 1.1 2.6e-39 135.4 1.1 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system MCPsignal PF00015.21 gi|344212664|ref|YP_004796984.1| - 2e-38 131.9 25.1 2e-38 131.9 25.1 5.5 2 2 3 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344212664|ref|YP_004796984.1| - 3.4e-11 43.4 10.6 2.4e-08 34.2 0.1 5.0 4 0 0 4 4 4 2 HAMP domain dCache_1 PF02743.18 gi|344212664|ref|YP_004796984.1| - 0.00047 20.0 0.2 0.00047 20.0 0.2 4.4 3 1 1 4 4 4 1 Cache domain Mod_r PF07200.13 gi|344212664|ref|YP_004796984.1| - 0.77 9.9 33.7 1.1 9.4 6.7 4.4 2 1 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein DUF2779 PF11074.8 gi|344212664|ref|YP_004796984.1| - 0.8 10.2 2.7 50 4.4 0.1 3.6 3 1 0 3 3 3 0 Domain of unknown function(DUF2779) SCO1-SenC PF02630.14 gi|344212664|ref|YP_004796984.1| - 0.94 9.4 7.0 2 8.3 0.0 3.9 1 1 3 5 5 5 0 SCO1/SenC Laminin_II PF06009.12 gi|344212664|ref|YP_004796984.1| - 2.5 8.1 44.8 0.058 13.4 8.0 5.6 3 2 2 5 5 5 0 Laminin Domain II DASH_Dam1 PF08653.10 gi|344212664|ref|YP_004796984.1| - 7 6.5 6.3 27 4.6 0.1 4.1 5 0 0 5 5 5 0 DASH complex subunit Dam1 HTH_10 PF04967.12 gi|344212665|ref|YP_004796985.1| - 1.4e-11 44.0 0.1 2.1e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344212665|ref|YP_004796985.1| - 2.2e-09 37.4 5.6 2.2e-09 37.4 5.6 1.7 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MCRA PF06100.11 gi|344212666|ref|YP_004796986.1| - 4.5e-210 698.6 0.0 5.1e-210 698.5 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 gi|344212666|ref|YP_004796986.1| - 1.4e-06 28.4 0.1 3.3e-06 27.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344212666|ref|YP_004796986.1| - 0.0032 17.1 0.2 0.037 13.6 0.1 2.3 2 1 0 2 2 2 1 FAD dependent oxidoreductase DUF21 PF01595.20 gi|344212667|ref|YP_004796987.1| - 2.6e-46 157.5 1.3 3.7e-46 157.0 1.3 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|344212667|ref|YP_004796987.1| - 1.1e-21 76.6 0.1 3.9e-21 74.9 0.1 2.0 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|344212667|ref|YP_004796987.1| - 6.6e-14 52.1 4.0 1.1e-08 35.4 1.3 2.5 2 0 0 2 2 2 2 CBS domain Acetyltransf_9 PF13527.7 gi|344212668|ref|YP_004796988.1| - 9.7e-26 90.3 0.0 2.6e-25 89.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_17 PF17668.1 gi|344212668|ref|YP_004796988.1| - 1e-24 87.6 1.0 3.1e-24 86.0 1.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|344212668|ref|YP_004796988.1| - 5.6e-13 49.2 0.0 1.1e-12 48.3 0.0 1.4 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_1 PF00583.25 gi|344212668|ref|YP_004796988.1| - 8.8e-06 25.9 0.0 0.00085 19.5 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344212668|ref|YP_004796988.1| - 5.2e-05 23.6 0.0 0.00011 22.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344212668|ref|YP_004796988.1| - 0.00088 19.2 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344212668|ref|YP_004796988.1| - 0.0011 19.0 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|344212668|ref|YP_004796988.1| - 0.004 17.1 0.0 0.0097 15.9 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein BCD PF15461.6 gi|344212669|ref|YP_004796989.1| - 3.6e-74 249.6 17.2 3.6e-74 249.6 17.2 1.5 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase UPF0220 PF05255.11 gi|344212669|ref|YP_004796989.1| - 0.16 11.5 2.7 0.34 10.4 0.1 2.6 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0220) Amino_oxidase PF01593.24 gi|344212670|ref|YP_004796990.1| - 1.9e-30 106.6 0.1 2.3e-30 106.3 0.1 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|344212670|ref|YP_004796990.1| - 2.6e-16 59.6 0.4 7.5e-16 58.1 0.4 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|344212670|ref|YP_004796990.1| - 1.6e-10 41.1 7.8 8e-10 38.8 7.8 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|344212670|ref|YP_004796990.1| - 5.1e-08 33.4 2.2 2e-05 25.0 0.4 3.4 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|344212670|ref|YP_004796990.1| - 1.5e-07 31.0 1.3 6.6e-05 22.3 0.1 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344212670|ref|YP_004796990.1| - 8.4e-07 28.7 0.0 3.1e-06 26.8 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|344212670|ref|YP_004796990.1| - 3.2e-05 23.4 0.2 0.12 11.6 0.0 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344212670|ref|YP_004796990.1| - 4.3e-05 22.8 2.0 8.8e-05 21.7 1.5 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|344212670|ref|YP_004796990.1| - 6.3e-05 22.4 0.6 0.00013 21.4 0.6 1.5 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|344212670|ref|YP_004796990.1| - 6.8e-05 21.7 0.0 0.023 13.4 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|344212670|ref|YP_004796990.1| - 0.0011 18.1 1.1 0.0018 17.5 1.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|344212670|ref|YP_004796990.1| - 0.0051 16.1 0.1 0.0097 15.2 0.1 1.4 1 0 0 1 1 1 1 Thi4 family MCRA PF06100.11 gi|344212670|ref|YP_004796990.1| - 0.046 12.5 0.0 0.075 11.8 0.0 1.3 1 0 0 1 1 1 0 MCRA family AlaDh_PNT_C PF01262.21 gi|344212670|ref|YP_004796990.1| - 0.11 11.8 0.1 0.19 11.0 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|344212670|ref|YP_004796990.1| - 0.23 11.3 0.4 0.42 10.5 0.4 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pribosyltran PF00156.27 gi|344212671|ref|YP_004796991.1| - 2.5e-16 59.6 0.8 3.7e-16 59.0 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|344212671|ref|YP_004796991.1| - 0.0014 18.2 0.0 0.0018 17.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|344212671|ref|YP_004796991.1| - 0.015 14.8 0.3 0.035 13.6 0.3 1.6 1 1 0 1 1 1 0 Phosphoribosyl transferase LETM1 PF07766.13 gi|344212672|ref|YP_004796992.1| - 0.085 12.2 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 LETM1-like protein DsbB PF02600.16 gi|344212673|ref|YP_004796993.1| - 4.6e-17 62.8 12.2 1.3e-16 61.4 12.2 1.6 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB SLATT_1 PF18181.1 gi|344212673|ref|YP_004796993.1| - 0.52 10.3 2.1 4.5 7.2 0.4 2.4 2 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Aldo_ket_red PF00248.21 gi|344212674|ref|YP_004796994.1| - 1.4e-71 241.1 0.0 1.6e-71 240.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|344212674|ref|YP_004796994.1| - 0.02 13.4 0.0 0.03 12.9 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase MFS_1 PF07690.16 gi|344212675|ref|YP_004796995.1| - 1.9e-12 46.8 30.6 1.9e-12 46.8 30.6 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344212675|ref|YP_004796995.1| - 0.0067 15.3 0.6 0.0067 15.3 0.6 2.4 2 2 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.24 gi|344212675|ref|YP_004796995.1| - 0.011 14.7 2.5 0.011 14.7 2.5 2.7 3 0 0 3 3 3 0 Sugar (and other) transporter LacY_symp PF01306.19 gi|344212675|ref|YP_004796995.1| - 0.018 13.8 4.2 0.044 12.5 1.7 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter UPF0227 PF05728.12 gi|344212675|ref|YP_004796995.1| - 0.27 11.1 0.1 0.51 10.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) HhH-GPD PF00730.25 gi|344212676|ref|YP_004796996.1| - 3.2e-20 72.6 0.0 4.6e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|344212676|ref|YP_004796996.1| - 0.00028 21.1 7.2 0.00069 19.9 7.2 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|344212676|ref|YP_004796996.1| - 0.0062 16.3 0.0 0.023 14.5 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|344212676|ref|YP_004796996.1| - 0.027 15.1 0.1 0.4 11.3 0.0 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain DUF732 PF05305.14 gi|344212676|ref|YP_004796996.1| - 0.044 14.2 0.2 0.12 12.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF732) DUF2400 PF09674.10 gi|344212676|ref|YP_004796996.1| - 0.062 13.3 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF5059 PF16502.5 gi|344212677|ref|YP_004796997.1| - 4.1e-267 888.0 106.0 5.5e-267 887.5 106.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|344212677|ref|YP_004796997.1| - 3.7e-14 53.0 0.1 1.2e-13 51.3 0.1 2.0 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family APP_E2 PF12925.7 gi|344212677|ref|YP_004796997.1| - 0.027 14.2 1.0 2.1 8.0 0.4 2.6 3 0 0 3 3 3 0 E2 domain of amyloid precursor protein TAT_signal PF10518.9 gi|344212677|ref|YP_004796997.1| - 0.23 11.4 0.0 0.23 11.4 0.0 4.9 5 0 0 5 5 5 0 TAT (twin-arginine translocation) pathway signal sequence PRTP PF01366.18 gi|344212677|ref|YP_004796997.1| - 0.27 9.2 5.1 3.6 5.5 0.2 2.4 2 0 0 2 2 2 0 Herpesvirus processing and transport protein SAM_adeno_trans PF01887.16 gi|344212678|ref|YP_004796998.1| - 2.2e-76 256.4 1.2 2.4e-76 256.2 1.2 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|344212679|ref|YP_004796999.1| - 2.2e-15 57.1 0.0 4.7e-15 56.0 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|344212679|ref|YP_004796999.1| - 0.019 14.7 0.0 0.046 13.4 0.0 1.6 1 1 0 1 1 1 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.13 gi|344212680|ref|YP_004797000.1| - 4.6e-35 121.0 4.7 7.1e-35 120.4 4.7 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|344212680|ref|YP_004797000.1| - 4.9e-30 104.8 0.0 3.4e-23 82.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|344212680|ref|YP_004797000.1| - 6.1e-18 65.0 0.1 7.9e-11 41.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|344212680|ref|YP_004797000.1| - 4.2e-16 59.1 0.0 6.9e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|344212680|ref|YP_004797000.1| - 6.9e-10 39.1 0.0 0.00093 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|344212680|ref|YP_004797000.1| - 5e-09 36.1 0.7 1.2e-08 34.8 0.7 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|344212680|ref|YP_004797000.1| - 8.9e-08 31.5 0.1 0.013 14.6 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|344212680|ref|YP_004797000.1| - 1.1e-06 29.1 0.0 0.042 14.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|344212680|ref|YP_004797000.1| - 1.7e-05 24.9 0.0 0.15 12.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|344212680|ref|YP_004797000.1| - 3.9e-05 23.5 0.1 0.02 14.7 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|344212680|ref|YP_004797000.1| - 0.00014 21.5 0.1 0.00037 20.1 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|344212680|ref|YP_004797000.1| - 0.00026 21.3 0.0 0.0045 17.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|344212680|ref|YP_004797000.1| - 0.00028 20.8 0.1 0.42 10.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|344212680|ref|YP_004797000.1| - 0.00046 20.5 0.0 0.65 10.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|344212680|ref|YP_004797000.1| - 0.00047 19.5 1.8 0.1 11.8 0.0 2.9 4 0 0 4 4 4 1 TIP49 P-loop domain AAA_30 PF13604.6 gi|344212680|ref|YP_004797000.1| - 0.00096 18.9 0.0 0.073 12.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|344212680|ref|YP_004797000.1| - 0.0039 16.2 0.0 0.22 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain T2SSE PF00437.20 gi|344212680|ref|YP_004797000.1| - 0.0098 15.0 0.2 0.11 11.5 0.0 2.5 3 0 0 3 3 3 1 Type II/IV secretion system protein PhoH PF02562.16 gi|344212680|ref|YP_004797000.1| - 0.014 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|344212680|ref|YP_004797000.1| - 0.016 15.3 0.0 0.054 13.7 0.0 1.9 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|344212680|ref|YP_004797000.1| - 0.02 14.6 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_2 PF07724.14 gi|344212680|ref|YP_004797000.1| - 0.021 15.0 0.4 6.1 6.9 0.0 3.2 3 0 0 3 3 3 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|344212680|ref|YP_004797000.1| - 0.021 14.0 0.0 0.044 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MCM_lid PF17855.1 gi|344212680|ref|YP_004797000.1| - 0.022 15.2 0.4 0.11 12.9 0.0 2.2 1 1 1 2 2 2 0 MCM AAA-lid domain AAA_10 PF12846.7 gi|344212680|ref|YP_004797000.1| - 0.022 13.7 0.0 0.089 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain ABC_tran PF00005.27 gi|344212680|ref|YP_004797000.1| - 0.03 14.8 0.0 0.086 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|344212680|ref|YP_004797000.1| - 0.052 13.9 0.0 0.24 11.8 0.0 2.1 2 0 0 2 2 1 0 AAA ATPase domain RHH_6 PF16762.5 gi|344212680|ref|YP_004797000.1| - 0.07 13.8 0.3 0.92 10.2 0.0 2.9 2 0 0 2 2 2 0 Ribbon-helix-helix domain NACHT PF05729.12 gi|344212680|ref|YP_004797000.1| - 0.087 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|344212680|ref|YP_004797000.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TrwB_AAD_bind PF10412.9 gi|344212680|ref|YP_004797000.1| - 0.14 11.0 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF5345 PF17280.2 gi|344212680|ref|YP_004797000.1| - 0.25 11.3 1.7 0.81 9.7 1.7 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5345) CPBP PF02517.16 gi|344212681|ref|YP_004797001.1| - 9.9e-09 35.5 7.3 9.9e-09 35.5 7.3 2.4 3 0 0 3 3 3 2 CPBP intramembrane metalloprotease DUF5118 PF17162.4 gi|344212681|ref|YP_004797001.1| - 0.0044 16.8 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5118) DNA_binding_1 PF01035.20 gi|344212682|ref|YP_004797002.1| - 4.3e-09 36.4 0.0 7e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Strep_SA_rep PF06696.11 gi|344212682|ref|YP_004797002.1| - 0.49 10.5 1.8 1.1 9.4 0.3 2.1 2 0 0 2 2 2 0 Streptococcal surface antigen repeat GDPD PF03009.17 gi|344212683|ref|YP_004797003.1| - 2.3e-20 73.4 0.0 5.6e-20 72.2 0.0 1.7 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|344212683|ref|YP_004797003.1| - 0.00027 21.3 0.1 0.00087 19.7 0.1 1.9 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family TAT_signal PF10518.9 gi|344212683|ref|YP_004797003.1| - 0.16 11.9 4.0 0.41 10.6 4.0 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DS PF01916.17 gi|344212684|ref|YP_004797004.1| - 1.7e-99 332.7 0.0 1.9e-99 332.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Peptidase_M22 PF00814.25 gi|344212684|ref|YP_004797004.1| - 0.085 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Glycoprotease family AzlC PF03591.14 gi|344212685|ref|YP_004797005.1| - 5e-38 130.6 11.1 5e-38 130.6 11.1 1.7 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.12 gi|344212686|ref|YP_004797006.1| - 2.3e-20 72.6 8.3 2.5e-20 72.5 8.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) SprT-like PF10263.9 gi|344212687|ref|YP_004797007.1| - 1.5e-05 24.8 0.0 1.9e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 SprT-like family DUF4157 PF13699.6 gi|344212687|ref|YP_004797007.1| - 0.057 13.7 0.9 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) NIF3 PF01784.18 gi|344212688|ref|YP_004797008.1| - 8.7e-57 192.6 0.0 1e-56 192.4 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.24 gi|344212688|ref|YP_004797008.1| - 0.0094 15.4 0.2 0.012 15.1 0.2 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyoxalase_4 PF13669.6 gi|344212688|ref|YP_004797008.1| - 0.058 13.7 0.4 0.4 11.0 0.1 2.2 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SelB-wing_2 PF09106.11 gi|344212689|ref|YP_004797009.1| - 0.11 12.8 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HNH_5 PF14279.6 gi|344212689|ref|YP_004797009.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 HNH endonuclease Abhydrolase_6 PF12697.7 gi|344212690|ref|YP_004797010.1| - 8.8e-24 85.3 13.3 8.8e-24 85.3 13.3 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344212690|ref|YP_004797010.1| - 1.9e-16 60.5 0.0 1.6e-15 57.5 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344212690|ref|YP_004797010.1| - 3e-08 33.2 0.0 6.5e-07 28.9 0.0 2.2 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Amidohydro_1 PF01979.20 gi|344212691|ref|YP_004797011.1| - 2.5e-31 109.3 0.8 1.6e-29 103.3 0.8 2.6 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|344212691|ref|YP_004797011.1| - 6.6e-09 35.5 0.0 8.7e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|344212691|ref|YP_004797011.1| - 5.7e-07 29.4 9.7 1.9e-05 24.3 4.7 2.2 2 0 0 2 2 2 2 Amidohydrolase family Peptidase_U32 PF01136.19 gi|344212691|ref|YP_004797011.1| - 0.023 13.8 0.0 0.043 13.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase family U32 Arginase PF00491.21 gi|344212692|ref|YP_004797012.1| - 5.7e-57 193.3 1.2 7.2e-57 193.0 1.2 1.1 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|344212693|ref|YP_004797013.1| - 0.00076 19.5 0.0 0.0047 16.9 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain Hydrolase PF00702.26 gi|344212694|ref|YP_004797014.1| - 2.4e-07 31.3 0.4 4.2e-07 30.5 0.4 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344212694|ref|YP_004797014.1| - 9.9e-07 29.0 0.0 1.1e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344212694|ref|YP_004797014.1| - 0.0001 22.3 0.1 0.00036 20.5 0.1 2.0 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|344212694|ref|YP_004797014.1| - 0.00076 19.9 0.3 0.00096 19.6 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3235 PF11574.8 gi|344212694|ref|YP_004797014.1| - 0.074 13.9 0.0 0.43 11.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) CobD_Cbib PF03186.13 gi|344212695|ref|YP_004797015.1| - 7.5e-69 232.0 13.6 9.8e-69 231.6 13.6 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|344212696|ref|YP_004797016.1| - 4.5e-38 131.5 20.6 5.2e-38 131.3 20.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.7 gi|344212697|ref|YP_004797017.1| - 3e-19 69.9 1.0 4.6e-19 69.3 0.6 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|344212697|ref|YP_004797017.1| - 0.00079 19.2 0.0 0.001 18.9 0.0 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|344212697|ref|YP_004797017.1| - 0.0019 17.8 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|344212697|ref|YP_004797017.1| - 0.024 14.6 0.0 0.068 13.1 0.0 1.7 1 1 0 1 1 1 0 Cytidylyltransferase Aminotran_1_2 PF00155.21 gi|344212698|ref|YP_004797018.1| - 1.4e-38 133.0 0.0 1.7e-38 132.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II TerB PF05099.13 gi|344212698|ref|YP_004797018.1| - 0.041 13.9 1.1 2.6 8.0 0.3 2.2 2 0 0 2 2 2 0 Tellurite resistance protein TerB CbiZ PF01955.18 gi|344212699|ref|YP_004797019.1| - 2.8e-42 145.0 1.2 3.2e-42 144.8 1.2 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CobA_CobO_BtuR PF02572.15 gi|344212700|ref|YP_004797020.1| - 8.1e-52 176.0 0.0 9.3e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|344212700|ref|YP_004797020.1| - 0.16 12.0 0.1 0.26 11.3 0.1 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SatD PF16264.5 gi|344212702|ref|YP_004797022.1| - 2.3e-14 53.5 0.0 3.2e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 SatD family (SatD) UPF0122 PF04297.14 gi|344212702|ref|YP_004797022.1| - 0.0033 17.6 0.1 0.0058 16.8 0.1 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_10 PF04967.12 gi|344212702|ref|YP_004797022.1| - 0.058 13.2 0.4 0.53 10.1 0.1 2.3 2 0 0 2 2 2 0 HTH DNA binding domain GATase_3 PF07685.14 gi|344212703|ref|YP_004797023.1| - 1.3e-45 155.4 0.0 1.8e-45 155.0 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|344212703|ref|YP_004797023.1| - 2.8e-22 79.1 0.0 4.3e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|344212703|ref|YP_004797023.1| - 3.9e-18 66.0 0.0 2.9e-17 63.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF1611 PF07755.11 gi|344212703|ref|YP_004797023.1| - 0.071 12.4 0.0 0.94 8.7 0.1 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain CbiA PF01656.23 gi|344212704|ref|YP_004797024.1| - 2.4e-17 63.2 0.0 4.5e-17 62.3 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|344212704|ref|YP_004797024.1| - 1.1e-14 54.8 0.0 1.8e-14 54.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|344212704|ref|YP_004797024.1| - 4.4e-14 52.5 1.0 3.4e-07 30.0 0.2 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|344212704|ref|YP_004797024.1| - 2.1e-08 34.0 0.0 3e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|344212704|ref|YP_004797024.1| - 5.7e-08 32.5 0.0 6.8e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|344212704|ref|YP_004797024.1| - 0.00051 19.4 3.4 0.0037 16.6 3.4 2.0 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|344212704|ref|YP_004797024.1| - 0.002 17.4 1.4 0.0034 16.6 0.5 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|344212704|ref|YP_004797024.1| - 0.004 17.0 0.1 0.014 15.2 0.0 2.0 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|344212704|ref|YP_004797024.1| - 0.017 14.4 0.2 0.037 13.3 0.2 1.5 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.14 gi|344212704|ref|YP_004797024.1| - 0.021 14.0 0.2 0.033 13.4 0.2 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_30 PF13604.6 gi|344212704|ref|YP_004797024.1| - 0.11 12.2 1.3 0.11 12.2 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|344212704|ref|YP_004797024.1| - 0.29 10.7 2.7 0.64 9.6 2.7 1.7 1 1 0 1 1 1 0 AAA domain HTH_11 PF08279.12 gi|344212706|ref|YP_004797026.1| - 1.5e-06 28.0 0.0 1.9e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.11 gi|344212706|ref|YP_004797026.1| - 3.2e-05 23.4 0.0 4.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_20 PF12840.7 gi|344212706|ref|YP_004797026.1| - 7e-05 22.8 0.0 8.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|344212706|ref|YP_004797026.1| - 0.0011 19.1 0.0 0.0055 16.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|344212706|ref|YP_004797026.1| - 0.0031 17.0 0.0 0.0054 16.2 0.0 1.5 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|344212706|ref|YP_004797026.1| - 0.0082 15.9 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|344212706|ref|YP_004797026.1| - 0.012 15.6 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SgrR_N PF12793.7 gi|344212706|ref|YP_004797026.1| - 0.015 15.5 0.0 0.016 15.4 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term MarR_2 PF12802.7 gi|344212706|ref|YP_004797026.1| - 0.034 14.0 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.6 gi|344212706|ref|YP_004797026.1| - 0.056 13.3 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_7 PF02796.15 gi|344212706|ref|YP_004797026.1| - 0.057 13.5 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.11 gi|344212706|ref|YP_004797026.1| - 0.07 13.2 0.1 0.19 11.8 0.0 1.6 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain SelB-wing_3 PF09107.11 gi|344212706|ref|YP_004797026.1| - 0.073 12.7 0.0 0.095 12.3 0.0 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_30 PF13556.6 gi|344212706|ref|YP_004797026.1| - 0.077 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.10 gi|344212706|ref|YP_004797026.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|344212706|ref|YP_004797026.1| - 0.19 11.6 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344212707|ref|YP_004797027.1| - 2.6e-07 30.4 0.1 6.4e-07 29.2 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|344212707|ref|YP_004797027.1| - 0.00098 19.1 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|344212707|ref|YP_004797027.1| - 0.0021 17.8 0.0 0.0048 16.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344212707|ref|YP_004797027.1| - 0.021 14.8 0.0 0.035 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|344212707|ref|YP_004797027.1| - 0.051 13.4 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344212707|ref|YP_004797027.1| - 0.08 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|344212707|ref|YP_004797027.1| - 0.095 13.2 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|344212707|ref|YP_004797027.1| - 0.17 11.7 0.5 2.7 7.9 0.1 2.9 3 0 0 3 3 3 0 Homeodomain-like domain FAD_binding_7 PF03441.14 gi|344212708|ref|YP_004797028.1| - 3e-60 203.2 0.4 4.3e-60 202.7 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|344212708|ref|YP_004797028.1| - 8.3e-20 71.4 0.1 2.9e-19 69.7 0.1 1.8 2 0 0 2 2 2 1 DNA photolyase Herpes_BLRF2 PF05812.12 gi|344212709|ref|YP_004797029.1| - 0.048 13.8 0.4 1.9 8.7 0.0 2.3 2 1 1 3 3 3 0 Herpesvirus BLRF2 protein FlgD_ig PF13860.6 gi|344212712|ref|YP_004797032.1| - 0.04 13.8 0.1 8.1 6.4 0.0 2.7 3 0 0 3 3 3 0 FlgD Ig-like domain CarboxypepD_reg PF13620.6 gi|344212712|ref|YP_004797032.1| - 0.068 13.5 0.7 0.068 13.5 0.7 2.5 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain Pilin_N PF07790.11 gi|344212714|ref|YP_004797034.1| - 0.00013 22.8 0.1 0.00025 21.9 0.1 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal TraI_2B PF18340.1 gi|344212714|ref|YP_004797034.1| - 0.14 12.2 0.1 0.89 9.7 0.0 2.1 2 0 0 2 2 2 0 DNA relaxase TraI 2B/2B-like domain FG-GAP_2 PF14312.6 gi|344212714|ref|YP_004797034.1| - 2.3 8.6 5.9 22 5.4 0.6 2.7 2 0 0 2 2 2 0 FG-GAP repeat T2SSF PF00482.23 gi|344212715|ref|YP_004797035.1| - 9.6e-16 57.9 1.6 1.5e-12 47.6 0.2 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DEAD PF00270.29 gi|344212716|ref|YP_004797036.1| - 4.1e-16 59.2 0.0 9.6e-16 58.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|344212716|ref|YP_004797036.1| - 1.6e-05 25.0 0.0 1.6e-05 25.0 0.0 2.1 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_14 PF13173.6 gi|344212716|ref|YP_004797036.1| - 0.00013 22.0 0.5 0.0078 16.3 0.0 3.2 2 1 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.15 gi|344212716|ref|YP_004797036.1| - 0.00049 19.0 0.0 0.00084 18.2 0.0 1.3 1 0 0 1 1 1 1 Adenovirus IVa2 protein AAA_16 PF13191.6 gi|344212716|ref|YP_004797036.1| - 0.00083 19.8 0.0 0.0038 17.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|344212716|ref|YP_004797036.1| - 0.00088 19.2 0.0 0.003 17.5 0.0 1.9 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|344212716|ref|YP_004797036.1| - 0.0029 17.9 0.0 0.009 16.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|344212716|ref|YP_004797036.1| - 0.0072 16.7 0.0 0.095 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain Acetyltransf_13 PF13880.6 gi|344212716|ref|YP_004797036.1| - 0.035 14.1 0.0 0.094 12.7 0.0 1.7 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase AAA_7 PF12775.7 gi|344212716|ref|YP_004797036.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|344212716|ref|YP_004797036.1| - 0.14 11.2 0.1 0.36 9.9 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein HTH_10 PF04967.12 gi|344212719|ref|YP_004797039.1| - 6.6e-19 67.5 0.1 1e-18 66.8 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344212719|ref|YP_004797039.1| - 1.1e-05 25.3 1.1 1.9e-05 24.6 1.1 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|344212719|ref|YP_004797039.1| - 0.0015 18.3 0.1 0.004 17.0 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344212719|ref|YP_004797039.1| - 0.019 14.5 0.0 0.039 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|344212719|ref|YP_004797039.1| - 0.04 14.1 0.0 0.068 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like adh_short PF00106.25 gi|344212720|ref|YP_004797040.1| - 5.8e-61 205.4 1.2 7e-61 205.1 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344212720|ref|YP_004797040.1| - 2.2e-49 168.1 1.2 2.8e-49 167.8 1.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344212720|ref|YP_004797040.1| - 2.1e-19 70.1 1.1 2.8e-19 69.7 1.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344212720|ref|YP_004797040.1| - 3.3e-05 23.5 0.6 0.00023 20.7 0.6 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family PSK_trans_fac PF07704.11 gi|344212720|ref|YP_004797040.1| - 0.011 16.5 2.8 0.011 16.5 2.8 2.0 2 1 0 2 2 2 0 Rv0623-like transcription factor HEM4 PF02602.15 gi|344212720|ref|YP_004797040.1| - 0.013 14.8 0.2 0.024 14.0 0.2 1.5 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD THF_DHG_CYH_C PF02882.19 gi|344212720|ref|YP_004797040.1| - 0.024 14.0 0.1 0.048 13.0 0.1 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GDP_Man_Dehyd PF16363.5 gi|344212720|ref|YP_004797040.1| - 0.095 12.1 0.1 0.21 10.9 0.1 1.8 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase DAO PF01266.24 gi|344212721|ref|YP_004797041.1| - 2.7e-57 195.0 5.8 3.2e-57 194.7 5.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|344212721|ref|YP_004797041.1| - 7.9e-13 48.4 0.2 1.1e-12 47.9 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|344212721|ref|YP_004797041.1| - 2.6e-12 46.6 5.4 2.6e-12 46.6 5.4 1.4 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344212721|ref|YP_004797041.1| - 1.5e-06 27.7 3.3 2e-05 24.0 1.2 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344212721|ref|YP_004797041.1| - 0.00017 22.1 0.5 0.0097 16.5 0.6 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344212721|ref|YP_004797041.1| - 0.00021 20.8 10.0 0.0014 18.1 10.0 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344212721|ref|YP_004797041.1| - 0.00063 19.1 2.5 0.036 13.3 0.7 2.6 2 1 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|344212721|ref|YP_004797041.1| - 0.0022 18.4 0.1 0.0077 16.7 0.0 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|344212721|ref|YP_004797041.1| - 0.0033 16.5 4.6 0.64 9.0 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|344212721|ref|YP_004797041.1| - 0.0036 16.5 2.1 0.48 9.5 0.8 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|344212721|ref|YP_004797041.1| - 0.0039 16.0 0.6 0.38 9.4 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|344212721|ref|YP_004797041.1| - 0.0051 17.0 3.5 0.014 15.6 2.7 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|344212721|ref|YP_004797041.1| - 0.0058 16.5 0.2 0.013 15.4 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|344212721|ref|YP_004797041.1| - 0.019 14.3 0.5 0.24 10.6 0.2 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344212721|ref|YP_004797041.1| - 0.028 14.1 0.4 0.046 13.4 0.4 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PALP PF00291.25 gi|344212721|ref|YP_004797041.1| - 0.075 12.4 3.6 0.099 12.0 0.8 2.1 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme Trp_halogenase PF04820.14 gi|344212721|ref|YP_004797041.1| - 0.095 11.5 1.8 3.6 6.3 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 gi|344212721|ref|YP_004797041.1| - 0.13 12.6 0.3 0.3 11.4 0.3 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|344212721|ref|YP_004797041.1| - 0.46 10.4 3.5 3 7.8 0.6 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding IF-2B PF01008.17 gi|344212722|ref|YP_004797042.1| - 1.7e-43 148.9 0.0 2.5e-43 148.3 0.0 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.22 gi|344212722|ref|YP_004797042.1| - 0.042 13.8 0.1 0.17 11.8 0.1 2.0 1 1 0 2 2 2 0 DeoR C terminal sensor domain eIF-3_zeta PF05091.12 gi|344212722|ref|YP_004797042.1| - 0.062 12.3 0.3 0.081 11.9 0.3 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) PMC2NT PF08066.12 gi|344212722|ref|YP_004797042.1| - 0.17 12.6 2.2 0.39 11.4 2.2 1.7 1 0 0 1 1 1 0 PMC2NT (NUC016) domain Syntaxin_2 PF14523.6 gi|344212722|ref|YP_004797042.1| - 0.18 12.2 1.5 1.3 9.4 1.5 2.0 1 1 1 2 2 2 0 Syntaxin-like protein LPD5 PF18799.1 gi|344212722|ref|YP_004797042.1| - 0.24 11.8 2.1 0.57 10.6 0.6 2.4 2 2 0 2 2 2 0 Large polyvalent protein-associated domain 5 DUF883 PF05957.13 gi|344212722|ref|YP_004797042.1| - 3.2 8.4 8.0 1 10.0 1.7 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Glyco_hydro_77 PF02446.17 gi|344212723|ref|YP_004797043.1| - 6.6e-150 500.0 0.1 8.1e-150 499.7 0.1 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Glycos_transf_1 PF00534.20 gi|344212724|ref|YP_004797044.1| - 1.6e-26 92.8 0.0 2.9e-26 92.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344212724|ref|YP_004797044.1| - 7.9e-24 84.6 0.0 1.5e-23 83.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344212724|ref|YP_004797044.1| - 1.2e-14 54.7 0.0 2.4e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344212724|ref|YP_004797044.1| - 6.7e-11 42.9 0.0 1.1e-10 42.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|344212724|ref|YP_004797044.1| - 0.034 13.8 0.0 0.45 10.2 0.0 2.4 1 1 1 2 2 2 0 Starch synthase catalytic domain NTP_transferase PF00483.23 gi|344212726|ref|YP_004797046.1| - 1.1e-37 129.9 0.0 1.4e-37 129.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344212726|ref|YP_004797046.1| - 2.2e-08 34.6 0.0 2.8e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|344212726|ref|YP_004797046.1| - 0.096 12.4 3.9 0.2 11.4 0.0 2.8 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Glucodextran_N PF09137.11 gi|344212727|ref|YP_004797047.1| - 1.6e-73 247.5 0.7 3.2e-73 246.5 0.7 1.5 1 0 0 1 1 1 1 Glucodextranase, domain N Glyco_hydro_15 PF00723.21 gi|344212727|ref|YP_004797047.1| - 1.3e-36 126.4 2.6 4.5e-22 78.5 0.0 5.1 3 2 1 4 4 4 4 Glycosyl hydrolases family 15 SBBP PF06739.11 gi|344212727|ref|YP_004797047.1| - 0.18 11.9 0.8 23 5.1 0.0 2.7 2 0 0 2 2 2 0 Beta-propeller repeat Alpha-amylase PF00128.24 gi|344212728|ref|YP_004797048.1| - 8.8e-45 153.7 0.2 9.4e-42 143.8 0.2 2.8 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.18 gi|344212728|ref|YP_004797048.1| - 2.8e-05 24.5 0.3 0.00034 21.0 0.0 2.7 3 0 0 3 3 3 1 Alpha amylase, C-terminal all-beta domain Malt_amylase_C PF16657.5 gi|344212728|ref|YP_004797048.1| - 5.8e-05 23.1 0.0 0.00011 22.2 0.0 1.5 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain PKD PF00801.20 gi|344212728|ref|YP_004797048.1| - 0.0023 17.7 0.0 0.0082 16.0 0.0 2.1 1 0 0 1 1 1 1 PKD domain DUF3459 PF11941.8 gi|344212728|ref|YP_004797048.1| - 0.0034 17.7 0.2 0.013 15.8 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.10 gi|344212728|ref|YP_004797048.1| - 0.013 15.2 0.0 0.05 13.3 0.0 2.1 2 0 0 2 2 2 0 Beta-galactosidase C-terminal domain Radical_SAM PF04055.21 gi|344212728|ref|YP_004797048.1| - 0.074 13.4 0.0 2.5 8.4 0.0 2.4 2 1 0 2 2 2 0 Radical SAM superfamily IclR PF01614.18 gi|344212730|ref|YP_004797050.1| - 6.5e-31 106.9 0.1 9e-31 106.4 0.1 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344212730|ref|YP_004797050.1| - 1e-05 25.2 0.0 3.7e-05 23.4 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|344212730|ref|YP_004797050.1| - 0.00022 21.2 0.0 0.00054 20.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344212730|ref|YP_004797050.1| - 0.00061 19.6 0.1 0.0012 18.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|344212730|ref|YP_004797050.1| - 0.00099 19.0 0.3 0.0061 16.5 0.0 2.4 3 0 0 3 3 3 1 MarR family TrmB PF01978.19 gi|344212730|ref|YP_004797050.1| - 0.0023 17.8 0.0 0.0052 16.6 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|344212730|ref|YP_004797050.1| - 0.026 14.5 0.0 0.073 13.1 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain PadR PF03551.14 gi|344212730|ref|YP_004797050.1| - 0.029 14.3 0.0 0.072 13.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|344212730|ref|YP_004797050.1| - 0.046 13.6 0.0 0.18 11.7 0.0 2.0 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|344212730|ref|YP_004797050.1| - 0.094 12.9 0.1 4.2 7.6 0.0 2.7 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HpcH_HpaI PF03328.14 gi|344212731|ref|YP_004797051.1| - 2.8e-08 33.2 0.0 6.2e-08 32.0 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Glyoxalase PF00903.25 gi|344212732|ref|YP_004797052.1| - 1.8e-14 54.0 0.7 2.1e-14 53.8 0.7 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|344212732|ref|YP_004797052.1| - 6.9e-11 42.4 0.2 8.9e-09 35.6 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|344212732|ref|YP_004797052.1| - 2.1e-06 28.5 0.9 2.4e-06 28.3 0.9 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|344212732|ref|YP_004797052.1| - 0.0047 17.1 0.9 0.015 15.4 0.4 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|344212732|ref|YP_004797052.1| - 0.0048 16.8 0.0 0.007 16.3 0.0 1.4 1 1 0 1 1 1 1 Glyoxalase-like domain FAD-oxidase_C PF02913.19 gi|344212733|ref|YP_004797053.1| - 5.9e-60 203.0 0.9 1.1e-59 202.1 0.4 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|344212733|ref|YP_004797053.1| - 3.1e-37 127.4 0.5 6.5e-37 126.4 0.5 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|344212733|ref|YP_004797053.1| - 2.3e-10 40.9 4.0 4.2e-10 40.0 4.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|344212733|ref|YP_004797053.1| - 2.9e-10 40.4 4.6 6.1e-10 39.4 4.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|344212733|ref|YP_004797053.1| - 1.6e-07 31.4 0.0 2.3e-05 24.5 0.0 2.9 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|344212733|ref|YP_004797053.1| - 7e-05 22.9 4.8 0.026 14.6 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344212733|ref|YP_004797053.1| - 0.00089 19.8 4.7 0.0019 18.7 4.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344212733|ref|YP_004797053.1| - 0.0034 17.5 5.7 0.013 15.6 5.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344212733|ref|YP_004797053.1| - 0.021 14.9 4.2 0.057 13.6 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344212733|ref|YP_004797053.1| - 0.041 13.7 13.1 0.26 11.2 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|344212733|ref|YP_004797053.1| - 0.085 13.1 0.3 0.31 11.2 0.3 2.0 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|344212733|ref|YP_004797053.1| - 0.13 12.8 12.6 0.21 12.2 2.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|344212733|ref|YP_004797053.1| - 0.14 12.3 12.1 1.1 9.4 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|344212733|ref|YP_004797053.1| - 0.24 12.3 4.2 0.68 10.9 4.2 1.8 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|344212733|ref|YP_004797053.1| - 3.7 7.8 13.0 1.3 9.2 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF362 PF04015.12 gi|344212734|ref|YP_004797054.1| - 2.5e-05 24.6 0.0 3.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|344212734|ref|YP_004797054.1| - 3.8e-05 23.0 0.7 6.4e-05 22.2 0.7 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain AraC_binding_2 PF14525.6 gi|344212734|ref|YP_004797054.1| - 0.0074 16.0 0.1 0.019 14.6 0.1 1.7 1 0 0 1 1 1 1 AraC-binding-like domain Beta-lactamase PF00144.24 gi|344212735|ref|YP_004797055.1| - 1e-73 248.4 2.8 1.3e-73 248.1 2.8 1.0 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 gi|344212735|ref|YP_004797055.1| - 0.15 11.7 0.0 18 4.8 0.0 2.4 2 0 0 2 2 2 0 Beta-lactamase enzyme family IclR PF01614.18 gi|344212736|ref|YP_004797056.1| - 3.9e-34 117.3 0.0 7e-34 116.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344212736|ref|YP_004797056.1| - 2.9e-09 36.6 0.0 6.5e-09 35.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|344212736|ref|YP_004797056.1| - 1.5e-08 34.6 0.3 5.3e-07 29.6 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344212736|ref|YP_004797056.1| - 4.9e-08 32.4 0.0 1.3e-07 31.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344212736|ref|YP_004797056.1| - 7.8e-07 28.9 0.0 2.8e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344212736|ref|YP_004797056.1| - 1.4e-06 28.1 0.0 5.3e-06 26.2 0.0 2.0 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344212736|ref|YP_004797056.1| - 5.7e-05 23.0 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|344212736|ref|YP_004797056.1| - 0.00065 20.1 0.6 0.0059 17.1 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|344212736|ref|YP_004797056.1| - 0.00078 19.6 0.0 0.012 15.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|344212736|ref|YP_004797056.1| - 0.001 18.9 0.0 0.0024 17.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|344212736|ref|YP_004797056.1| - 0.0035 17.3 0.0 0.02 14.9 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|344212736|ref|YP_004797056.1| - 0.0043 16.8 0.0 0.011 15.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_40 PF14493.6 gi|344212736|ref|YP_004797056.1| - 0.013 15.9 0.1 0.04 14.4 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|344212736|ref|YP_004797056.1| - 0.022 14.9 0.0 0.052 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_45 PF14947.6 gi|344212736|ref|YP_004797056.1| - 0.032 14.2 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_29 PF13551.6 gi|344212736|ref|YP_004797056.1| - 0.042 13.9 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix DUF3489 PF11994.8 gi|344212736|ref|YP_004797056.1| - 0.061 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) Syntaxin PF00804.25 gi|344212736|ref|YP_004797056.1| - 0.15 11.7 0.4 0.4 10.3 0.2 1.7 2 0 0 2 2 2 0 Syntaxin TetR_N PF00440.23 gi|344212736|ref|YP_004797056.1| - 0.2 11.5 1.1 0.5 10.2 0.1 2.2 2 1 1 3 3 2 0 Bacterial regulatory proteins, tetR family Acyl-CoA_dh_1 PF00441.24 gi|344212737|ref|YP_004797057.1| - 3.1e-30 105.4 0.4 4.3e-30 104.9 0.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344212737|ref|YP_004797057.1| - 2.9e-25 89.1 0.0 5.9e-25 88.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344212737|ref|YP_004797057.1| - 6.3e-24 84.0 0.0 1.1e-23 83.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|344212737|ref|YP_004797057.1| - 1e-07 32.3 0.2 1.7e-07 31.6 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|344212737|ref|YP_004797057.1| - 0.0017 18.1 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Aldedh PF00171.22 gi|344212738|ref|YP_004797058.1| - 7.9e-159 529.0 0.2 9e-159 528.9 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family AMP-binding PF00501.28 gi|344212739|ref|YP_004797059.1| - 9.7e-94 314.3 0.0 1.2e-93 314.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|344212739|ref|YP_004797059.1| - 8.5e-19 68.3 0.6 1.9e-18 67.2 0.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|344212739|ref|YP_004797059.1| - 0.0013 19.0 0.2 0.0077 16.5 0.0 2.3 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain ECH_1 PF00378.20 gi|344212740|ref|YP_004797060.1| - 3.6e-46 157.5 0.0 4.1e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|344212740|ref|YP_004797060.1| - 1.8e-32 113.2 0.1 1.4e-29 103.7 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase APH PF01636.23 gi|344212741|ref|YP_004797061.1| - 1e-42 146.7 5.6 1.4e-42 146.3 5.6 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|344212741|ref|YP_004797061.1| - 0.00041 19.7 0.0 0.00067 19.1 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.11 gi|344212741|ref|YP_004797061.1| - 0.049 12.5 0.0 0.072 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) 3HCDH_N PF02737.18 gi|344212742|ref|YP_004797062.1| - 6.5e-65 218.4 0.1 1.1e-64 217.6 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|344212742|ref|YP_004797062.1| - 1.5e-54 185.0 0.0 2.2e-54 184.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|344212742|ref|YP_004797062.1| - 1.3e-43 147.6 1.1 7.8e-22 77.7 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|344212742|ref|YP_004797062.1| - 2.6e-30 106.1 0.0 8.6e-27 94.5 0.0 2.3 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|344212742|ref|YP_004797062.1| - 0.00085 19.5 0.1 0.002 18.3 0.1 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|344212742|ref|YP_004797062.1| - 0.0016 18.4 0.1 0.0034 17.4 0.1 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|344212742|ref|YP_004797062.1| - 0.031 13.9 0.1 0.051 13.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|344212742|ref|YP_004797062.1| - 0.044 14.3 0.4 0.15 12.6 0.4 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|344212742|ref|YP_004797062.1| - 0.055 12.8 1.1 0.1 11.9 1.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|344212743|ref|YP_004797063.1| - 3.6e-37 127.9 4.3 7.4e-37 126.9 4.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344212743|ref|YP_004797063.1| - 7.4e-22 77.4 0.0 1.7e-21 76.2 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|344212743|ref|YP_004797063.1| - 1.4e-15 57.8 6.2 1.4e-15 57.8 6.2 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344212743|ref|YP_004797063.1| - 4.8e-12 46.5 0.1 4.8e-12 46.5 0.1 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 gi|344212743|ref|YP_004797063.1| - 0.011 15.4 0.1 0.037 13.7 0.0 2.0 3 0 0 3 3 3 0 4-hydroxyphenylacetate 3-hydroxylase N terminal AFG1_ATPase PF03969.16 gi|344212743|ref|YP_004797063.1| - 0.028 13.3 0.0 0.041 12.8 0.0 1.1 1 0 0 1 1 1 0 AFG1-like ATPase HAD_2 PF13419.6 gi|344212744|ref|YP_004797064.1| - 3.4e-16 59.8 0.0 3.8e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344212744|ref|YP_004797064.1| - 2.2e-10 40.5 0.2 7.1e-10 38.8 0.2 1.9 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|344212744|ref|YP_004797064.1| - 2.4e-09 37.8 0.2 9.4e-09 35.9 0.2 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Metal_resist PF13801.6 gi|344212744|ref|YP_004797064.1| - 2.8 8.2 7.3 11 6.3 0.8 3.1 3 0 0 3 3 3 0 Heavy-metal resistance adh_short_C2 PF13561.6 gi|344212745|ref|YP_004797065.1| - 1.9e-61 207.6 3.1 2.4e-61 207.3 3.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344212745|ref|YP_004797065.1| - 8.1e-60 201.6 0.3 1.1e-59 201.2 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344212745|ref|YP_004797065.1| - 8.6e-15 55.1 0.3 1.3e-14 54.5 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344212745|ref|YP_004797065.1| - 4e-06 26.5 0.1 5.9e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|344212745|ref|YP_004797065.1| - 0.00031 21.0 0.1 0.0039 17.5 0.2 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|344212745|ref|YP_004797065.1| - 0.0013 18.6 0.3 0.0027 17.6 0.3 1.6 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|344212745|ref|YP_004797065.1| - 0.0019 17.3 0.1 0.0032 16.6 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain FTR PF01913.18 gi|344212745|ref|YP_004797065.1| - 0.0026 17.7 0.1 0.0044 17.0 0.1 1.4 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase THF_DHG_CYH_C PF02882.19 gi|344212745|ref|YP_004797065.1| - 0.0042 16.4 0.0 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.17 gi|344212745|ref|YP_004797065.1| - 0.013 16.1 0.1 0.026 15.1 0.1 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent GDP_Man_Dehyd PF16363.5 gi|344212745|ref|YP_004797065.1| - 0.073 12.5 0.1 0.11 11.8 0.0 1.4 2 0 0 2 2 2 0 GDP-mannose 4,6 dehydratase DFP PF04127.15 gi|344212745|ref|YP_004797065.1| - 0.11 12.3 0.1 0.24 11.2 0.1 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein MaoC_dehydratas PF01575.19 gi|344212746|ref|YP_004797066.1| - 2.6e-27 94.8 0.4 3.2e-27 94.5 0.4 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344212746|ref|YP_004797066.1| - 1e-06 28.9 0.4 2e-06 27.9 0.4 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|344212746|ref|YP_004797066.1| - 0.025 14.9 0.2 0.048 14.0 0.2 1.8 1 1 0 1 1 1 0 Thioesterase superfamily 4HBT_2 PF13279.6 gi|344212746|ref|YP_004797066.1| - 0.039 14.5 0.0 0.044 14.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Acyl-CoA_dh_1 PF00441.24 gi|344212747|ref|YP_004797067.1| - 3.7e-55 186.3 2.6 6.7e-55 185.4 2.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|344212747|ref|YP_004797067.1| - 6.6e-28 97.6 1.7 8.2e-28 97.3 0.4 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|344212747|ref|YP_004797067.1| - 1.3e-27 95.8 0.1 2.5e-27 94.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|344212747|ref|YP_004797067.1| - 4.7e-27 94.9 7.3 8.3e-27 94.1 7.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|344212747|ref|YP_004797067.1| - 1.1e-05 25.3 2.4 2.1e-05 24.3 0.2 2.3 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|344212747|ref|YP_004797067.1| - 0.0076 15.3 1.1 0.035 13.2 0.1 2.1 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Peripla_BP_6 PF13458.6 gi|344212748|ref|YP_004797068.1| - 5.1e-40 138.2 10.2 6.2e-40 137.9 10.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|344212748|ref|YP_004797068.1| - 9e-25 87.5 0.3 1.4e-24 86.9 0.3 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|344212748|ref|YP_004797068.1| - 2.6e-14 53.0 1.8 5e-13 48.8 1.8 2.1 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|344212748|ref|YP_004797068.1| - 0.00039 20.1 2.0 0.0011 18.7 2.0 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|344212749|ref|YP_004797069.1| - 5e-32 111.1 46.4 5.9e-32 110.9 46.4 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component IRK PF01007.20 gi|344212749|ref|YP_004797069.1| - 0.12 12.2 0.1 0.12 12.2 0.1 2.7 3 0 0 3 3 3 0 Inward rectifier potassium channel transmembrane domain BPD_transp_2 PF02653.16 gi|344212750|ref|YP_004797070.1| - 3e-34 118.4 26.8 4.7e-34 117.8 26.8 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344212751|ref|YP_004797071.1| - 6.5e-28 97.9 0.0 9.1e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212751|ref|YP_004797071.1| - 1.2e-07 31.9 0.3 0.00034 20.5 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|344212751|ref|YP_004797071.1| - 6.2e-07 29.2 0.2 1.2e-06 28.3 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|344212751|ref|YP_004797071.1| - 6.6e-05 23.5 0.1 8.9e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344212751|ref|YP_004797071.1| - 0.002 17.6 0.6 0.045 13.2 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344212751|ref|YP_004797071.1| - 0.0067 16.2 0.1 0.012 15.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344212751|ref|YP_004797071.1| - 0.03 14.7 0.2 0.075 13.4 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344212751|ref|YP_004797071.1| - 0.078 13.4 0.1 0.52 10.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|344212751|ref|YP_004797071.1| - 0.085 13.2 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|344212751|ref|YP_004797071.1| - 0.14 11.7 0.3 1.6 8.3 0.1 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.6 gi|344212751|ref|YP_004797071.1| - 0.15 11.8 0.7 0.5 10.0 0.3 1.9 2 1 1 3 3 3 0 AAA ATPase domain NB-ARC PF00931.22 gi|344212751|ref|YP_004797071.1| - 0.19 10.9 0.2 0.37 9.9 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain ABC_tran PF00005.27 gi|344212752|ref|YP_004797072.1| - 2.1e-29 102.8 0.0 3.1e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212752|ref|YP_004797072.1| - 2.5e-12 47.3 0.7 8e-06 25.9 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344212752|ref|YP_004797072.1| - 4.5e-07 29.5 0.1 9.9e-07 28.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344212752|ref|YP_004797072.1| - 5e-05 23.9 0.4 9.9e-05 22.9 0.2 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344212752|ref|YP_004797072.1| - 5.6e-05 22.7 0.2 0.0016 17.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344212752|ref|YP_004797072.1| - 0.0022 18.3 0.1 0.011 16.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|344212752|ref|YP_004797072.1| - 0.016 14.8 0.1 0.095 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|344212752|ref|YP_004797072.1| - 0.023 14.4 0.2 0.066 12.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|344212752|ref|YP_004797072.1| - 0.024 15.0 0.1 0.043 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|344212752|ref|YP_004797072.1| - 0.024 14.3 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344212752|ref|YP_004797072.1| - 0.059 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|344212752|ref|YP_004797072.1| - 0.078 12.3 0.1 1.5 8.0 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin ABC_ATPase PF09818.9 gi|344212752|ref|YP_004797072.1| - 0.13 11.0 0.2 0.82 8.4 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|344212752|ref|YP_004797072.1| - 0.23 11.4 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Aldo_ket_red PF00248.21 gi|344212754|ref|YP_004797074.1| - 1.9e-61 207.9 0.0 2.2e-61 207.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HypA PF01155.19 gi|344212755|ref|YP_004797075.1| - 0.0015 18.6 0.2 0.0017 18.3 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|344212755|ref|YP_004797075.1| - 0.0032 17.6 1.9 0.0072 16.4 1.9 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|344212755|ref|YP_004797075.1| - 0.0056 16.6 0.4 0.0063 16.5 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|344212755|ref|YP_004797075.1| - 0.012 15.6 1.0 0.016 15.2 1.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.26 gi|344212755|ref|YP_004797075.1| - 0.42 11.2 3.4 7.4 7.2 0.1 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type Aminotran_5 PF00266.19 gi|344212756|ref|YP_004797076.1| - 2.1e-35 122.4 0.0 2.5e-35 122.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|344212756|ref|YP_004797076.1| - 4.7e-05 22.9 0.2 7.8e-05 22.1 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|344212756|ref|YP_004797076.1| - 0.00048 18.8 0.0 0.0007 18.2 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Phage_integrase PF00589.22 gi|344212757|ref|YP_004797077.1| - 1.3e-17 64.2 0.0 3e-17 62.9 0.0 1.5 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|344212757|ref|YP_004797077.1| - 2.8e-05 24.3 0.1 8.7e-05 22.7 0.1 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|344212757|ref|YP_004797077.1| - 0.0013 19.0 0.1 0.012 15.9 0.0 2.2 2 0 0 2 2 2 1 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|344212757|ref|YP_004797077.1| - 0.003 18.0 0.0 0.0081 16.6 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Sigma70_r3 PF04539.16 gi|344212758|ref|YP_004797078.1| - 0.013 15.6 0.8 0.02 15.0 0.3 1.5 1 1 1 2 2 2 0 Sigma-70 region 3 HTH_13 PF11972.8 gi|344212758|ref|YP_004797078.1| - 0.034 14.2 0.0 0.1 12.7 0.0 1.7 1 1 1 2 2 2 0 HTH DNA binding domain DUF3791 PF12668.7 gi|344212758|ref|YP_004797078.1| - 0.082 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) HTH_10 PF04967.12 gi|344212758|ref|YP_004797078.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 HTH DNA binding domain HTH_17 PF12728.7 gi|344212758|ref|YP_004797078.1| - 0.13 12.5 0.1 0.34 11.1 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|344212758|ref|YP_004797078.1| - 0.19 11.3 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|344212758|ref|YP_004797078.1| - 0.21 11.5 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|344212758|ref|YP_004797078.1| - 0.24 11.1 0.1 0.47 10.2 0.1 1.5 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain DZR PF12773.7 gi|344212761|ref|YP_004797081.1| - 8.7e-07 28.9 9.0 2e-06 27.7 8.9 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344212761|ref|YP_004797081.1| - 1.8e-05 24.3 15.6 0.0028 17.3 5.4 2.5 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.21 gi|344212761|ref|YP_004797081.1| - 2.5e-05 24.0 4.0 0.0038 17.1 1.5 3.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family zinc_ribbon_15 PF17032.5 gi|344212761|ref|YP_004797081.1| - 3.8e-05 24.4 9.2 0.00035 21.3 1.9 2.3 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|344212761|ref|YP_004797081.1| - 8.9e-05 21.8 13.8 0.0011 18.3 4.6 2.8 1 1 2 3 3 3 3 zinc-ribbon domain DUF1902 PF08972.11 gi|344212761|ref|YP_004797081.1| - 0.0026 17.7 0.3 0.014 15.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1902) zf-NADH-PPase PF09297.11 gi|344212761|ref|YP_004797081.1| - 0.039 13.6 10.3 1 9.1 0.1 3.6 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|344212761|ref|YP_004797081.1| - 0.043 13.8 5.0 0.088 12.9 5.0 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain VapB_antitoxin PF09957.9 gi|344212761|ref|YP_004797081.1| - 0.045 13.7 0.6 0.19 11.7 0.6 2.0 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Zn-ribbon_8 PF09723.10 gi|344212761|ref|YP_004797081.1| - 0.087 13.0 10.9 0.31 11.2 3.1 3.4 2 1 1 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|344212761|ref|YP_004797081.1| - 0.093 12.7 15.1 1.7 8.6 1.8 3.6 3 1 0 3 3 3 0 Nudix N-terminal zf_UBZ PF18439.1 gi|344212761|ref|YP_004797081.1| - 0.13 11.9 3.1 36 4.1 0.2 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|344212761|ref|YP_004797081.1| - 0.16 12.0 0.6 0.16 12.0 0.6 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zinc-ribbons_6 PF07191.12 gi|344212761|ref|YP_004797081.1| - 0.2 11.6 8.8 2.1 8.4 9.0 2.2 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|344212761|ref|YP_004797081.1| - 0.27 11.1 5.8 0.26 11.2 1.0 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) PolC_DP2 PF03833.13 gi|344212761|ref|YP_004797081.1| - 0.29 9.0 4.9 0.37 8.6 4.9 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Cys_rich_KTR PF14205.6 gi|344212761|ref|YP_004797081.1| - 0.5 10.2 3.5 5.2 6.9 3.6 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR Metallothio_PEC PF02068.16 gi|344212761|ref|YP_004797081.1| - 0.51 10.7 12.4 0.65 10.4 11.7 1.6 1 1 0 1 1 1 0 Plant PEC family metallothionein Prok-RING_1 PF14446.6 gi|344212761|ref|YP_004797081.1| - 0.6 10.1 9.1 0.79 9.7 5.2 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|344212761|ref|YP_004797081.1| - 1.6 8.8 9.8 0.75 9.8 2.8 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|344212761|ref|YP_004797081.1| - 3.4 7.6 8.5 1.4 8.9 5.0 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Ribosomal_L32p PF01783.23 gi|344212761|ref|YP_004797081.1| - 3.6 7.9 7.6 1.6 9.1 4.2 2.2 2 1 0 2 2 2 0 Ribosomal L32p protein family NOB1_Zn_bind PF08772.11 gi|344212761|ref|YP_004797081.1| - 4.9 7.4 12.9 8.2 6.7 5.7 2.9 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_7 PF02591.15 gi|344212761|ref|YP_004797081.1| - 6.8 7.0 8.8 8.1 6.7 0.3 3.1 3 0 0 3 3 3 0 C4-type zinc ribbon domain RHH_1 PF01402.21 gi|344212763|ref|YP_004797083.1| - 1.4e-08 34.3 0.2 2e-08 33.8 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|344212763|ref|YP_004797083.1| - 1.4e-05 25.2 0.0 1.4e-05 25.2 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|344212763|ref|YP_004797083.1| - 0.017 15.0 0.1 0.023 14.6 0.1 1.3 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB PSK_trans_fac PF07704.11 gi|344212763|ref|YP_004797083.1| - 0.019 15.7 1.0 0.024 15.4 1.0 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor DEK_C PF08766.11 gi|344212763|ref|YP_004797083.1| - 0.12 12.4 0.4 0.23 11.4 0.1 1.6 2 0 0 2 2 2 0 DEK C terminal domain Tubulin PF00091.25 gi|344212764|ref|YP_004797084.1| - 1.6e-37 129.6 3.4 4.5e-37 128.2 3.4 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|344212764|ref|YP_004797084.1| - 3.7e-36 123.3 4.9 3.8e-36 123.3 0.8 2.9 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|344212764|ref|YP_004797084.1| - 0.071 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 ThiF family ATP_bind_3 PF01171.20 gi|344212765|ref|YP_004797085.1| - 4.2e-14 52.7 0.0 6e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|344212765|ref|YP_004797085.1| - 0.00017 20.5 0.0 0.00023 20.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase zn-ribbon_14 PF16503.5 gi|344212765|ref|YP_004797085.1| - 0.0006 19.3 1.2 0.0006 19.3 1.2 3.3 5 0 0 5 5 5 1 Zinc-ribbon Lar_restr_allev PF14354.6 gi|344212765|ref|YP_004797085.1| - 0.0008 19.7 2.4 0.4 11.1 0.1 3.4 3 0 0 3 3 3 1 Restriction alleviation protein Lar NAD_synthase PF02540.17 gi|344212765|ref|YP_004797085.1| - 0.0012 18.0 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase PAPS_reduct PF01507.19 gi|344212765|ref|YP_004797085.1| - 0.0015 18.6 0.0 0.0033 17.5 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|344212765|ref|YP_004797085.1| - 0.044 13.3 0.5 0.34 10.4 0.0 2.5 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC QueH PF02677.14 gi|344212765|ref|YP_004797085.1| - 0.093 12.8 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Epoxyqueuosine reductase QueH DUF3181 PF11378.8 gi|344212765|ref|YP_004797085.1| - 0.15 12.4 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3181) zf-ribbon_3 PF13248.6 gi|344212765|ref|YP_004797085.1| - 0.48 9.9 14.1 3.8 7.0 0.2 3.7 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|344212765|ref|YP_004797085.1| - 2.8 8.0 9.2 1.4 9.0 0.8 3.2 3 0 0 3 3 3 0 Double zinc ribbon Abhydrolase_6 PF12697.7 gi|344212766|ref|YP_004797086.1| - 1.2e-06 29.3 8.0 1.5e-06 28.9 8.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|344212766|ref|YP_004797086.1| - 0.12 12.2 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family DUF2332 PF10094.9 gi|344212767|ref|YP_004797087.1| - 7.8e-116 387.2 5.1 8.7e-116 387.0 5.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) Amino_oxidase PF01593.24 gi|344212768|ref|YP_004797088.1| - 8.8e-14 51.6 3.0 1.8e-13 50.6 3.0 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|344212768|ref|YP_004797088.1| - 7e-13 48.6 6.5 1.3e-12 47.8 3.8 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|344212768|ref|YP_004797088.1| - 2.9e-06 26.6 1.8 2.9e-06 26.6 1.8 1.6 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|344212768|ref|YP_004797088.1| - 3.5e-06 26.9 1.7 3.5e-06 26.9 1.7 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344212768|ref|YP_004797088.1| - 4.6e-05 22.3 1.4 0.0014 17.5 1.1 2.5 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|344212768|ref|YP_004797088.1| - 6e-05 22.4 1.2 0.00013 21.3 1.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344212768|ref|YP_004797088.1| - 0.00018 20.9 0.5 0.024 13.9 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344212768|ref|YP_004797088.1| - 0.00022 20.7 1.0 0.00038 19.9 1.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344212768|ref|YP_004797088.1| - 0.0005 19.4 0.3 0.00096 18.5 0.3 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|344212768|ref|YP_004797088.1| - 0.00069 19.0 0.9 0.0012 18.1 0.9 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|344212768|ref|YP_004797088.1| - 0.013 14.5 0.4 0.02 13.9 0.4 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein GIDA PF01134.22 gi|344212768|ref|YP_004797088.1| - 0.02 14.0 1.6 0.028 13.5 1.6 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|344212768|ref|YP_004797088.1| - 0.077 13.0 0.5 3.5 7.6 0.2 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|344212768|ref|YP_004797088.1| - 0.14 12.7 0.6 1.3 9.6 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|344212768|ref|YP_004797088.1| - 0.34 10.2 6.0 0.036 13.4 1.6 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Reo_sigmaC_M PF17750.1 gi|344212770|ref|YP_004797090.1| - 0.07 13.0 0.0 0.2 11.5 0.0 1.7 1 0 0 1 1 1 0 Reovirus sigma C capsid protein triple beta spiral CopD PF05425.13 gi|344212771|ref|YP_004797091.1| - 1.4e-11 44.7 7.0 1.4e-11 44.7 7.0 2.0 1 1 1 2 2 2 1 Copper resistance protein D DUF2214 PF09980.9 gi|344212771|ref|YP_004797091.1| - 0.00036 20.4 6.8 0.0013 18.6 6.8 1.8 1 1 0 1 1 1 1 Predicted membrane protein (DUF2214) DUF2749 PF10907.8 gi|344212771|ref|YP_004797091.1| - 0.01 16.0 3.3 2.1 8.6 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2749) RhodobacterPufX PF11511.8 gi|344212772|ref|YP_004797092.1| - 0.0074 15.9 0.4 0.0074 15.9 0.4 3.1 3 0 0 3 3 3 1 Intrinsic membrane protein PufX PgaD PF13994.6 gi|344212772|ref|YP_004797092.1| - 0.52 10.4 3.5 0.49 10.4 2.4 1.6 1 1 0 1 1 1 0 PgaD-like protein Tim17 PF02466.19 gi|344212772|ref|YP_004797092.1| - 7.2 7.0 11.3 7.5 7.0 2.8 2.9 2 1 1 3 3 3 0 Tim17/Tim22/Tim23/Pmp24 family Methyltransf_11 PF08241.12 gi|344212773|ref|YP_004797093.1| - 7.4e-17 61.8 0.4 2.5e-16 60.1 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344212773|ref|YP_004797093.1| - 6.6e-15 55.6 1.3 3.1e-14 53.4 0.2 2.6 2 2 2 4 4 4 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212773|ref|YP_004797093.1| - 2.5e-12 46.9 0.2 2.3e-11 43.7 0.2 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344212773|ref|YP_004797093.1| - 1.7e-10 41.0 0.0 2.9e-10 40.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344212773|ref|YP_004797093.1| - 1.4e-08 35.4 0.8 1.7e-07 31.9 0.3 2.7 2 1 0 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|344212773|ref|YP_004797093.1| - 1e-07 31.7 0.0 1.9e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|344212773|ref|YP_004797093.1| - 1.5e-06 27.7 0.1 1.2e-05 24.8 0.1 2.2 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|344212773|ref|YP_004797093.1| - 6.5e-05 23.0 0.0 0.00018 21.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|344212773|ref|YP_004797093.1| - 0.00072 19.4 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|344212773|ref|YP_004797093.1| - 0.0011 18.3 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.14 gi|344212773|ref|YP_004797093.1| - 0.0063 16.1 0.1 0.014 15.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|344212773|ref|YP_004797093.1| - 0.0079 16.3 0.1 0.021 14.9 0.1 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.15 gi|344212773|ref|YP_004797093.1| - 0.015 15.2 0.1 0.02 14.8 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase RrnaAD PF00398.20 gi|344212773|ref|YP_004797093.1| - 0.024 13.7 0.0 0.037 13.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|344212773|ref|YP_004797093.1| - 0.21 11.0 0.2 0.44 9.9 0.2 1.5 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AP_endonuc_2 PF01261.24 gi|344212774|ref|YP_004797094.1| - 3.2e-31 108.4 1.4 6.4e-31 107.4 0.9 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Autoind_bind PF03472.15 gi|344212774|ref|YP_004797094.1| - 0.064 12.7 0.1 2.9 7.4 0.1 2.5 3 0 0 3 3 3 0 Autoinducer binding domain HTH_10 PF04967.12 gi|344212776|ref|YP_004797096.1| - 8.5e-13 47.9 0.0 1.3e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|344212776|ref|YP_004797096.1| - 0.0039 17.0 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|344212776|ref|YP_004797096.1| - 0.13 12.0 0.2 0.41 10.5 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain BPL_LplA_LipB PF03099.19 gi|344212777|ref|YP_004797097.1| - 1.6e-06 28.1 0.0 2.5e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Cupin_2 PF07883.11 gi|344212778|ref|YP_004797098.1| - 7.9e-11 41.5 0.9 1.8e-10 40.4 0.9 1.6 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|344212778|ref|YP_004797098.1| - 0.00049 20.0 0.5 0.00094 19.1 0.5 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain TF_Zn_Ribbon PF08271.12 gi|344212778|ref|YP_004797098.1| - 0.00082 18.8 1.8 0.0019 17.7 1.8 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cupin_3 PF05899.12 gi|344212778|ref|YP_004797098.1| - 0.013 15.2 0.5 0.04 13.6 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF861) Nudix_N_2 PF14803.6 gi|344212778|ref|YP_004797098.1| - 0.018 15.0 1.5 0.036 14.0 1.5 1.5 1 0 0 1 1 1 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|344212778|ref|YP_004797098.1| - 0.062 13.2 1.0 0.21 11.6 1.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|344212778|ref|YP_004797098.1| - 0.066 13.2 0.0 0.091 12.8 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|344212778|ref|YP_004797098.1| - 0.78 9.9 3.5 18 5.5 0.6 2.2 1 1 0 2 2 2 0 Zinc ribbon domain HTH_10 PF04967.12 gi|344212779|ref|YP_004797099.1| - 1.2e-15 57.1 0.0 1.8e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|344212779|ref|YP_004797099.1| - 0.065 13.1 0.0 4.6 7.2 0.0 2.5 2 0 0 2 2 2 0 MarR family HTH_1 PF00126.27 gi|344212779|ref|YP_004797099.1| - 0.14 12.1 0.0 0.39 10.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Complex1_49kDa PF00346.19 gi|344212780|ref|YP_004797100.1| - 3.4e-84 282.2 0.0 6.8e-83 277.9 0.0 2.0 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|344212780|ref|YP_004797100.1| - 9.1e-35 119.9 0.1 1.8e-34 119.0 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PMSR PF01625.21 gi|344212781|ref|YP_004797101.1| - 4.4e-54 182.8 2.1 5.1e-54 182.6 2.1 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase 4HBT_2 PF13279.6 gi|344212782|ref|YP_004797102.1| - 2.6e-19 69.9 0.0 3.1e-19 69.7 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|344212782|ref|YP_004797102.1| - 9.7e-18 64.3 0.1 2.2e-17 63.2 0.1 1.6 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|344212782|ref|YP_004797102.1| - 3.1e-11 43.1 0.1 1.8e-06 27.4 0.4 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase AI-2E_transport PF01594.16 gi|344212783|ref|YP_004797103.1| - 8.2e-18 64.6 45.5 8.1e-17 61.4 45.5 2.5 1 1 0 1 1 1 1 AI-2E family transporter Mannosyl_trans4 PF15971.5 gi|344212784|ref|YP_004797104.1| - 9.5e-73 243.4 8.3 9.5e-73 243.4 8.3 1.8 2 0 0 2 2 2 1 DolP-mannose mannosyltransferase RIO1 PF01163.22 gi|344212785|ref|YP_004797105.1| - 6.2e-50 169.4 0.7 8.7e-50 168.9 0.7 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|344212785|ref|YP_004797105.1| - 2e-29 101.6 0.1 3.8e-29 100.7 0.1 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|344212785|ref|YP_004797105.1| - 3.6e-05 23.8 0.3 0.022 14.7 0.0 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|344212785|ref|YP_004797105.1| - 0.0038 16.6 0.0 0.0059 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain DUF5642 PF18702.1 gi|344212785|ref|YP_004797105.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5642) Fe_dep_repress PF01325.19 gi|344212786|ref|YP_004797106.1| - 1.7e-13 50.5 0.0 3.4e-13 49.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|344212786|ref|YP_004797106.1| - 5.1e-07 29.5 0.0 1.1e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344212786|ref|YP_004797106.1| - 0.00059 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.15 gi|344212786|ref|YP_004797106.1| - 0.00094 19.2 0.1 0.0017 18.4 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_24 PF13412.6 gi|344212786|ref|YP_004797106.1| - 0.001 18.6 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|344212786|ref|YP_004797106.1| - 0.0091 16.0 0.0 0.021 14.8 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344212786|ref|YP_004797106.1| - 0.018 14.8 0.0 0.041 13.7 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|344212786|ref|YP_004797106.1| - 0.038 14.3 0.0 0.079 13.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|344212786|ref|YP_004797106.1| - 0.041 14.4 0.0 0.079 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain NifU PF01106.17 gi|344212787|ref|YP_004797107.1| - 2.9e-13 49.8 0.1 4.1e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 NifU-like domain AFOR_C PF01314.18 gi|344212788|ref|YP_004797108.1| - 2.1e-75 254.1 0.0 3.7e-75 253.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|344212788|ref|YP_004797108.1| - 3.6e-62 209.8 0.1 7.1e-62 208.8 0.1 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SBP_bac_5 PF00496.22 gi|344212789|ref|YP_004797109.1| - 4.2e-50 170.8 5.5 6.2e-50 170.2 5.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|344212790|ref|YP_004797110.1| - 1.6e-41 142.1 12.2 1.6e-41 142.1 12.2 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344212791|ref|YP_004797111.1| - 6.5e-31 107.5 9.2 6.5e-31 107.5 9.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|344212791|ref|YP_004797111.1| - 1.5e-08 34.5 0.1 1.5e-08 34.5 0.1 3.0 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|344212792|ref|YP_004797112.1| - 1.1e-26 94.0 0.0 1.5e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|344212792|ref|YP_004797112.1| - 8.4e-20 71.1 0.1 1.5e-19 70.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|344212792|ref|YP_004797112.1| - 8.4e-05 22.5 0.2 0.00019 21.4 0.0 1.5 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|344212792|ref|YP_004797112.1| - 0.038 14.4 0.1 0.091 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|344212792|ref|YP_004797112.1| - 0.039 14.2 0.4 0.46 10.8 0.4 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|344212793|ref|YP_004797113.1| - 1.6e-34 119.3 0.0 4.5e-34 117.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|344212793|ref|YP_004797113.1| - 4e-16 59.3 0.0 7.6e-16 58.4 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|344212793|ref|YP_004797113.1| - 4.8e-06 27.1 2.2 5.6e-06 26.9 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344212793|ref|YP_004797113.1| - 5.4e-06 26.7 0.2 0.00011 22.4 0.2 2.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|344212793|ref|YP_004797113.1| - 2.2e-05 24.0 0.0 3.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|344212793|ref|YP_004797113.1| - 0.00014 21.7 0.1 0.27 11.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|344212793|ref|YP_004797113.1| - 0.0026 18.2 0.0 0.044 14.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|344212793|ref|YP_004797113.1| - 0.0061 16.6 0.2 0.035 14.1 0.1 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|344212793|ref|YP_004797113.1| - 0.0069 16.3 0.1 0.013 15.4 0.1 1.4 1 0 0 1 1 1 1 NACHT domain ATP-synt_ab PF00006.25 gi|344212793|ref|YP_004797113.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.14 gi|344212793|ref|YP_004797113.1| - 0.026 14.4 0.1 0.048 13.5 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|344212793|ref|YP_004797113.1| - 0.036 14.0 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase PRK PF00485.18 gi|344212793|ref|YP_004797113.1| - 0.04 13.7 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TniB PF05621.11 gi|344212793|ref|YP_004797113.1| - 0.043 13.2 0.0 6.5 6.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|344212793|ref|YP_004797113.1| - 0.044 13.5 0.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|344212793|ref|YP_004797113.1| - 0.05 12.8 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|344212793|ref|YP_004797113.1| - 0.076 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.6 gi|344212793|ref|YP_004797113.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|344212793|ref|YP_004797113.1| - 0.11 12.3 0.1 0.26 11.0 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.6 gi|344212793|ref|YP_004797113.1| - 0.16 12.1 0.0 0.45 10.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|344212793|ref|YP_004797113.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|344212793|ref|YP_004797113.1| - 0.18 12.3 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|344212793|ref|YP_004797113.1| - 0.21 11.7 0.1 0.78 9.8 0.0 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase REV PF00424.18 gi|344212794|ref|YP_004797114.1| - 0.12 12.4 0.2 0.39 10.8 0.1 1.9 2 0 0 2 2 2 0 REV protein (anti-repression trans-activator protein) ABC_transp_aux PF09822.9 gi|344212795|ref|YP_004797115.1| - 1.9e-06 27.5 0.0 3.9e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|344212795|ref|YP_004797115.1| - 0.00075 19.9 0.5 0.0027 18.1 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ThuA PF06283.11 gi|344212795|ref|YP_004797115.1| - 0.0095 16.2 0.2 0.012 15.9 0.2 1.3 1 0 0 1 1 1 1 Trehalose utilisation Peptidase_S49 PF01343.18 gi|344212796|ref|YP_004797116.1| - 1e-18 67.7 2.3 1e-18 67.7 2.3 2.4 2 1 0 2 2 2 1 Peptidase family S49 CLP_protease PF00574.23 gi|344212796|ref|YP_004797116.1| - 0.0022 17.9 0.1 0.008 16.1 0.0 1.8 2 0 0 2 2 2 1 Clp protease OKR_DC_1_N PF03709.15 gi|344212796|ref|YP_004797116.1| - 0.0056 16.9 0.0 0.024 14.9 0.0 1.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Catalase_C PF18011.1 gi|344212796|ref|YP_004797116.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain found in long catalases Aldo_ket_red PF00248.21 gi|344212797|ref|YP_004797117.1| - 1.2e-21 77.2 0.0 1.6e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family AP_endonuc_2 PF01261.24 gi|344212797|ref|YP_004797117.1| - 0.038 13.4 0.1 2.5 7.5 0.0 2.4 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Methyltransf_11 PF08241.12 gi|344212798|ref|YP_004797118.1| - 1.8e-12 47.7 0.2 3e-12 47.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344212798|ref|YP_004797118.1| - 8.9e-12 45.6 0.2 1.7e-11 44.7 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344212798|ref|YP_004797118.1| - 3e-06 27.9 0.1 4.8e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|344212798|ref|YP_004797118.1| - 0.00026 21.9 1.2 0.001 20.0 0.6 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212798|ref|YP_004797118.1| - 0.00049 19.9 0.0 0.00063 19.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344212798|ref|YP_004797118.1| - 0.001 18.9 0.0 0.0018 18.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344212798|ref|YP_004797118.1| - 0.0011 18.3 0.0 0.0015 17.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|344212798|ref|YP_004797118.1| - 0.013 14.5 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|344212798|ref|YP_004797118.1| - 0.036 13.9 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.20 gi|344212798|ref|YP_004797118.1| - 0.15 11.3 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.12 gi|344212798|ref|YP_004797118.1| - 0.19 11.2 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Cupin_2 PF07883.11 gi|344212799|ref|YP_004797119.1| - 6.8e-07 28.9 2.7 6.8e-07 28.9 2.7 1.9 1 1 1 2 2 2 1 Cupin domain AraC_binding_2 PF14525.6 gi|344212799|ref|YP_004797119.1| - 0.01 15.5 0.2 0.012 15.3 0.2 1.2 1 0 0 1 1 1 0 AraC-binding-like domain AraC_binding PF02311.19 gi|344212799|ref|YP_004797119.1| - 0.035 14.0 0.1 0.043 13.7 0.1 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|344212799|ref|YP_004797119.1| - 0.036 13.7 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 Cupin PCO_ADO PF07847.12 gi|344212799|ref|YP_004797119.1| - 0.042 13.3 0.0 0.045 13.2 0.0 1.1 1 0 0 1 1 1 0 PCO_ADO Cupin_3 PF05899.12 gi|344212799|ref|YP_004797119.1| - 0.085 12.6 0.2 0.31 10.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF861) cNMP_binding PF00027.29 gi|344212799|ref|YP_004797119.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain HpcH_HpaI PF03328.14 gi|344212800|ref|YP_004797120.1| - 4.1e-34 117.7 0.0 4.9e-34 117.4 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family TFIIB PF00382.19 gi|344212801|ref|YP_004797121.1| - 4.4e-26 90.7 0.1 4.5e-13 49.1 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|344212801|ref|YP_004797121.1| - 4.5e-17 61.3 2.1 9.1e-17 60.3 2.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|344212801|ref|YP_004797121.1| - 0.00034 20.5 0.7 0.00069 19.5 0.7 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cyclin_C PF02984.19 gi|344212801|ref|YP_004797121.1| - 0.00064 19.8 0.0 0.029 14.5 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|344212801|ref|YP_004797121.1| - 0.041 13.4 4.4 0.071 12.6 0.2 2.8 3 0 0 3 3 3 0 Sigma-70, region 4 Auto_anti-p27 PF06677.12 gi|344212801|ref|YP_004797121.1| - 0.067 13.4 1.0 0.14 12.3 1.0 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_Tnp_ISL3 PF13542.6 gi|344212801|ref|YP_004797121.1| - 0.095 12.1 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DZR PF12773.7 gi|344212801|ref|YP_004797121.1| - 0.13 12.3 0.4 0.22 11.6 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|344212801|ref|YP_004797121.1| - 0.56 10.2 2.6 2.1 8.3 2.6 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|344212801|ref|YP_004797121.1| - 2.1 7.9 3.9 18 4.9 3.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain HTH_10 PF04967.12 gi|344212802|ref|YP_004797122.1| - 5.3e-14 51.8 0.0 8.2e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|344212802|ref|YP_004797122.1| - 8.4e-06 25.4 0.2 0.00015 21.4 0.2 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|344212802|ref|YP_004797122.1| - 5.1e-05 23.0 0.1 9.9e-05 22.1 0.1 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|344212802|ref|YP_004797122.1| - 0.0011 18.9 0.1 0.0025 17.7 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344212802|ref|YP_004797122.1| - 0.0015 18.1 0.1 0.0025 17.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_8 PF02954.19 gi|344212802|ref|YP_004797122.1| - 0.0017 18.1 0.1 0.004 16.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_WhiA PF02650.14 gi|344212802|ref|YP_004797122.1| - 0.0028 17.9 0.0 0.011 16.0 0.0 2.0 2 0 0 2 2 2 1 WhiA C-terminal HTH domain Sigma70_r4 PF04545.16 gi|344212802|ref|YP_004797122.1| - 0.0028 17.1 0.2 0.0086 15.6 0.2 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|344212802|ref|YP_004797122.1| - 0.003 17.5 0.1 0.0059 16.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344212802|ref|YP_004797122.1| - 0.0033 17.5 0.3 0.02 14.9 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344212802|ref|YP_004797122.1| - 0.0036 17.1 0.1 0.0066 16.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_psq PF05225.16 gi|344212802|ref|YP_004797122.1| - 0.0094 15.7 0.1 0.023 14.4 0.1 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain Sigma70_ECF PF07638.11 gi|344212802|ref|YP_004797122.1| - 0.01 15.8 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 ECF sigma factor HTH_3 PF01381.22 gi|344212802|ref|YP_004797122.1| - 0.022 14.8 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_1_2 PF13022.6 gi|344212802|ref|YP_004797122.1| - 0.035 14.3 0.0 0.057 13.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_28 PF13518.6 gi|344212802|ref|YP_004797122.1| - 0.086 13.0 0.1 0.26 11.4 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344212802|ref|YP_004797122.1| - 0.088 12.6 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain UPF0122 PF04297.14 gi|344212802|ref|YP_004797122.1| - 0.093 13.0 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Peptidase_A2E PF12382.8 gi|344212803|ref|YP_004797123.1| - 0.11 12.5 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon peptidase 2-Hacid_dh_C PF02826.19 gi|344212804|ref|YP_004797124.1| - 2.5e-58 196.4 0.0 4.3e-58 195.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|344212804|ref|YP_004797124.1| - 6.3e-32 110.0 0.1 9.2e-32 109.5 0.1 1.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|344212804|ref|YP_004797124.1| - 0.032 14.6 2.8 0.064 13.7 0.2 2.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ThiS PF02597.20 gi|344212805|ref|YP_004797125.1| - 4.8e-16 59.1 0.1 5.5e-16 59.0 0.1 1.0 1 0 0 1 1 1 1 ThiS family ThiS PF02597.20 gi|344212806|ref|YP_004797126.1| - 1.3e-05 25.8 0.0 0.00011 22.7 0.0 2.1 1 1 0 1 1 1 1 ThiS family AFOR_C PF01314.18 gi|344212811|ref|YP_004797131.1| - 2.6e-116 388.8 5.4 3.2e-116 388.5 5.4 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|344212811|ref|YP_004797131.1| - 7.5e-71 238.1 0.1 1.1e-70 237.5 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ribosomal_L15e PF00827.17 gi|344212812|ref|YP_004797132.1| - 5e-79 264.5 7.4 5.6e-79 264.3 7.4 1.0 1 0 0 1 1 1 1 Ribosomal L15 FtsK_4TM PF13491.6 gi|344212813|ref|YP_004797133.1| - 0.016 14.9 3.2 0.024 14.3 3.1 1.3 1 1 0 1 1 1 0 4TM region of DNA translocase FtsK/SpoIIIE Phage_holin_3_6 PF07332.11 gi|344212813|ref|YP_004797133.1| - 0.15 12.1 5.5 0.23 11.5 5.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF5337 PF17272.2 gi|344212813|ref|YP_004797133.1| - 1.6 8.6 5.0 0.23 11.3 0.6 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5337) BaxI_1 PF12811.7 gi|344212814|ref|YP_004797134.1| - 0.082 12.5 4.8 0.097 12.2 4.8 1.1 1 0 0 1 1 1 0 Bax inhibitor 1 like BCD PF15461.6 gi|344212815|ref|YP_004797135.1| - 5.9e-87 291.6 20.0 7.7e-87 291.2 20.0 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase SQS_PSY PF00494.19 gi|344212817|ref|YP_004797137.1| - 1.5e-63 214.8 8.9 1.9e-63 214.4 8.9 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase EcoEI_R_C PF08463.10 gi|344212817|ref|YP_004797137.1| - 0.06 13.5 0.1 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 EcoEI R protein C-terminal BAT PF15915.5 gi|344212818|ref|YP_004797138.1| - 7.5e-42 142.9 7.2 7.5e-42 142.9 7.2 2.3 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|344212818|ref|YP_004797138.1| - 8.8e-17 60.7 0.0 1.9e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|344212818|ref|YP_004797138.1| - 2e-16 60.5 0.8 4.8e-16 59.3 0.8 1.7 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|344212818|ref|YP_004797138.1| - 4.4e-12 46.2 0.0 1.4e-11 44.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.6 gi|344212818|ref|YP_004797138.1| - 1.5e-07 31.8 1.0 5.4e-07 30.0 0.4 2.1 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|344212818|ref|YP_004797138.1| - 3.9e-06 27.5 0.2 1.1e-05 26.1 0.2 1.8 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|344212818|ref|YP_004797138.1| - 5.7e-06 26.5 0.0 1.3e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344212818|ref|YP_004797138.1| - 0.002 18.1 0.0 0.0053 16.8 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344212818|ref|YP_004797138.1| - 0.018 15.1 0.0 0.047 13.7 0.0 1.8 1 0 0 1 1 1 0 PAS domain Big_2 PF02368.18 gi|344212818|ref|YP_004797138.1| - 0.14 12.0 3.5 0.28 11.1 1.0 2.6 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 2) ADD_ATRX PF17981.1 gi|344212819|ref|YP_004797139.1| - 0.064 13.1 0.5 1.5 8.8 0.0 2.2 2 0 0 2 2 2 0 Cysteine Rich ADD domain RNB PF00773.19 gi|344212820|ref|YP_004797140.1| - 1.3e-79 268.0 0.0 2.2e-78 263.9 0.0 2.0 1 1 0 1 1 1 1 RNB domain ABC_tran PF00005.27 gi|344212821|ref|YP_004797141.1| - 6.5e-29 101.2 0.0 8.5e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212821|ref|YP_004797141.1| - 2.5e-16 60.4 1.2 1.1e-11 45.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|344212821|ref|YP_004797141.1| - 0.0062 16.3 0.0 1.6 8.4 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|344212821|ref|YP_004797141.1| - 0.0063 17.0 0.0 0.0074 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344212821|ref|YP_004797141.1| - 0.096 13.1 0.1 0.46 10.9 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|344212821|ref|YP_004797141.1| - 0.17 10.5 0.0 4.3 5.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain DUF3685 PF12452.8 gi|344212822|ref|YP_004797142.1| - 1.6 8.4 5.2 3.4 7.3 5.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3685) DUF885 PF05960.11 gi|344212823|ref|YP_004797143.1| - 0.014 15.1 3.2 0.016 14.9 3.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Lactamase_B PF00753.27 gi|344212824|ref|YP_004797144.1| - 1.3e-10 41.6 12.4 3.8e-09 36.8 12.4 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|344212824|ref|YP_004797144.1| - 9e-08 32.6 0.0 1.6e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|344212824|ref|YP_004797144.1| - 0.014 14.9 1.2 0.03 13.8 1.2 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|344212824|ref|YP_004797144.1| - 0.14 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HTH_20 PF12840.7 gi|344212825|ref|YP_004797145.1| - 0.0075 16.3 0.2 0.011 15.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3107 PF11305.8 gi|344212825|ref|YP_004797145.1| - 0.02 15.1 0.5 0.049 13.9 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3107) GGDEF_2 PF17853.1 gi|344212825|ref|YP_004797145.1| - 0.022 15.0 0.2 0.03 14.6 0.2 1.3 1 1 0 1 1 1 0 GGDEF-like domain PKD PF00801.20 gi|344212827|ref|YP_004797147.1| - 9.1e-06 25.4 13.9 7.1e-05 22.6 0.8 3.4 3 0 0 3 3 3 2 PKD domain ChitinaseA_N PF08329.10 gi|344212827|ref|YP_004797147.1| - 0.00072 19.2 4.7 0.033 13.8 0.2 3.2 3 0 0 3 3 3 1 Chitinase A, N-terminal domain DUF4625 PF15418.6 gi|344212827|ref|YP_004797147.1| - 0.039 14.2 0.1 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Y_Y_Y PF07495.13 gi|344212827|ref|YP_004797147.1| - 0.072 13.1 0.0 0.26 11.3 0.0 2.0 1 0 0 1 1 1 0 Y_Y_Y domain He_PIG PF05345.12 gi|344212827|ref|YP_004797147.1| - 0.077 13.2 6.4 0.27 11.5 1.4 3.0 2 1 0 2 2 2 0 Putative Ig domain Big_3_5 PF16640.5 gi|344212827|ref|YP_004797147.1| - 0.23 11.7 11.3 0.51 10.6 1.3 2.7 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Ig_3 PF13927.6 gi|344212827|ref|YP_004797147.1| - 0.41 11.3 3.7 1.6 9.4 0.0 3.1 3 0 0 3 3 3 0 Immunoglobulin domain DUF11 PF01345.18 gi|344212827|ref|YP_004797147.1| - 6.4 7.2 9.0 1e+02 3.3 8.5 2.7 1 1 2 3 3 3 0 Domain of unknown function DUF11 Anti-TRAP PF15777.5 gi|344212828|ref|YP_004797148.1| - 0.00083 19.3 5.0 0.002 18.1 0.9 3.1 3 0 0 3 3 3 1 Tryptophan RNA-binding attenuator protein inhibitory protein DZR PF12773.7 gi|344212828|ref|YP_004797148.1| - 0.003 17.5 1.2 0.11 12.6 0.3 2.3 2 0 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|344212828|ref|YP_004797148.1| - 0.0035 17.4 5.1 0.029 14.5 1.8 2.4 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|344212828|ref|YP_004797148.1| - 0.016 15.2 4.0 0.052 13.6 0.3 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|344212828|ref|YP_004797148.1| - 0.079 12.5 5.8 2.4 7.7 0.1 4.0 3 0 0 3 3 3 0 TFIIB zinc-binding RNHCP PF12647.7 gi|344212828|ref|YP_004797148.1| - 0.1 12.6 1.0 0.74 9.8 0.3 2.2 2 0 0 2 2 2 0 RNHCP domain zf_UBZ PF18439.1 gi|344212828|ref|YP_004797148.1| - 0.14 11.8 5.3 28 4.4 0.2 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|344212828|ref|YP_004797148.1| - 0.15 12.0 0.2 0.15 12.0 0.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF1660 PF07874.11 gi|344212828|ref|YP_004797148.1| - 0.23 12.0 0.4 1.4 9.4 0.4 2.2 1 1 0 1 1 1 0 Prophage protein (DUF1660) RNA_POL_M_15KD PF02150.16 gi|344212828|ref|YP_004797148.1| - 0.26 11.2 4.0 30 4.6 0.1 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-ISL3 PF14690.6 gi|344212828|ref|YP_004797148.1| - 0.54 11.0 3.0 55 4.5 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FPG_IleRS PF06827.14 gi|344212828|ref|YP_004797148.1| - 0.99 9.3 7.3 3.2 7.7 0.5 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.10 gi|344212828|ref|YP_004797148.1| - 1.6 8.5 5.7 7.4 6.4 0.3 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|344212828|ref|YP_004797148.1| - 1.7 8.5 5.1 44 4.0 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger PADR1 PF08063.12 gi|344212828|ref|YP_004797148.1| - 1.7 8.5 4.2 7.6 6.4 0.1 3.0 3 0 0 3 3 3 0 PADR1 (NUC008) domain zinc_ribbon_4 PF13717.6 gi|344212828|ref|YP_004797148.1| - 2.7 8.0 5.6 57 3.7 2.0 3.1 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|344212828|ref|YP_004797148.1| - 2.9 8.2 8.0 30 5.0 0.4 3.5 2 1 1 3 3 3 0 zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|344212828|ref|YP_004797148.1| - 3.2 7.8 6.5 90 3.2 4.3 3.0 2 1 1 3 3 3 0 Transposase zinc-ribbon domain DUF5611 PF18446.1 gi|344212829|ref|YP_004797149.1| - 1.1e-28 100.1 0.3 1.3e-28 99.9 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) ComR_TPR PF18710.1 gi|344212829|ref|YP_004797149.1| - 0.0045 16.6 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 ComR tetratricopeptide ABC2_membrane PF01061.24 gi|344212830|ref|YP_004797150.1| - 7.3e-26 90.9 21.2 9e-26 90.6 21.2 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|344212830|ref|YP_004797150.1| - 0.066 12.3 20.0 0.041 13.0 18.5 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|344212831|ref|YP_004797151.1| - 6.5e-32 110.9 0.0 9.6e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212831|ref|YP_004797151.1| - 4.8e-13 49.6 0.8 1.1e-07 32.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|344212831|ref|YP_004797151.1| - 1.5e-06 28.8 0.0 4.1e-06 27.4 0.0 1.7 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|344212831|ref|YP_004797151.1| - 0.0019 17.9 0.1 0.035 13.8 0.1 2.4 1 1 0 1 1 1 1 AAA domain DLIC PF05783.11 gi|344212831|ref|YP_004797151.1| - 0.0037 16.1 0.0 0.0056 15.6 0.0 1.2 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA_23 PF13476.6 gi|344212831|ref|YP_004797151.1| - 0.0061 17.1 0.1 0.0099 16.4 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|344212831|ref|YP_004797151.1| - 0.0064 16.2 0.0 0.076 12.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|344212831|ref|YP_004797151.1| - 0.0078 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase NTPase_1 PF03266.15 gi|344212831|ref|YP_004797151.1| - 0.033 14.1 0.1 0.34 10.8 0.0 2.2 2 1 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|344212831|ref|YP_004797151.1| - 0.034 13.9 0.0 0.073 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|344212831|ref|YP_004797151.1| - 0.038 13.7 0.2 9.2 6.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|344212831|ref|YP_004797151.1| - 0.052 13.6 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|344212831|ref|YP_004797151.1| - 0.074 12.5 0.0 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain IIGP PF05049.13 gi|344212831|ref|YP_004797151.1| - 0.12 11.4 0.1 0.18 10.8 0.1 1.1 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) AAA_27 PF13514.6 gi|344212831|ref|YP_004797151.1| - 0.13 11.9 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344212831|ref|YP_004797151.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|344212831|ref|YP_004797151.1| - 0.17 11.6 0.0 0.79 9.5 0.0 2.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.6 gi|344212831|ref|YP_004797151.1| - 0.33 10.6 0.0 5.5 6.6 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain SepF PF04472.12 gi|344212832|ref|YP_004797152.1| - 6.9e-14 51.9 1.7 8.7e-14 51.6 1.7 1.1 1 0 0 1 1 1 1 Cell division protein SepF Lar_N PF09861.9 gi|344212832|ref|YP_004797152.1| - 0.037 13.2 0.1 0.044 12.9 0.1 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain DUF4791 PF16039.5 gi|344212833|ref|YP_004797153.1| - 0.09 12.3 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4791) PUA PF01472.20 gi|344212834|ref|YP_004797154.1| - 7.7e-19 67.4 1.0 1.3e-18 66.7 1.0 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|344212834|ref|YP_004797154.1| - 0.0054 17.0 0.1 0.0084 16.4 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Peripla_BP_2 PF01497.18 gi|344212835|ref|YP_004797155.1| - 8.4e-26 91.0 0.1 1.5e-25 90.2 0.1 1.4 1 1 0 1 1 1 1 Periplasmic binding protein ThiF PF00899.21 gi|344212837|ref|YP_004797157.1| - 6.5e-68 228.7 0.0 8.4e-68 228.3 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|344212837|ref|YP_004797157.1| - 0.0025 18.1 0.4 0.0076 16.5 0.4 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PglD_N PF17836.1 gi|344212837|ref|YP_004797157.1| - 0.019 15.6 0.1 0.031 14.9 0.1 1.4 1 0 0 1 1 1 0 PglD N-terminal domain NAD_binding_7 PF13241.6 gi|344212837|ref|YP_004797157.1| - 0.042 14.3 0.5 0.32 11.4 0.5 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|344212837|ref|YP_004797157.1| - 0.082 13.0 0.1 0.18 11.8 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase MCPsignal PF00015.21 gi|344212838|ref|YP_004797158.1| - 4.6e-51 173.0 49.5 1.2e-47 162.0 30.0 3.7 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 gi|344212838|ref|YP_004797158.1| - 4e-07 30.1 33.5 0.0024 17.9 3.6 4.2 2 2 2 4 4 4 4 Laminin Domain II DUF948 PF06103.11 gi|344212838|ref|YP_004797158.1| - 9.4e-07 29.0 32.5 0.0014 18.8 4.2 4.8 2 2 3 5 5 5 4 Bacterial protein of unknown function (DUF948) WXG100 PF06013.12 gi|344212838|ref|YP_004797158.1| - 9.6e-05 22.5 27.0 0.71 10.2 2.2 6.2 3 2 0 5 5 5 2 Proteins of 100 residues with WXG DASH_Duo1 PF08651.10 gi|344212838|ref|YP_004797158.1| - 0.00022 20.9 18.4 0.022 14.5 0.5 5.2 4 1 1 5 5 5 1 DASH complex subunit Duo1 Syntaxin_2 PF14523.6 gi|344212838|ref|YP_004797158.1| - 0.00088 19.6 17.1 0.84 10.0 0.1 4.6 2 2 1 3 3 3 2 Syntaxin-like protein CorA PF01544.18 gi|344212838|ref|YP_004797158.1| - 0.001 18.5 19.7 0.0071 15.7 8.7 2.3 2 0 0 2 2 2 2 CorA-like Mg2+ transporter protein DUF1664 PF07889.12 gi|344212838|ref|YP_004797158.1| - 0.0022 18.0 29.7 0.036 14.1 4.9 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|344212838|ref|YP_004797158.1| - 0.0026 18.0 21.5 0.0068 16.6 6.3 2.5 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|344212838|ref|YP_004797158.1| - 0.004 16.1 30.6 0.034 13.1 10.3 2.4 1 1 0 2 2 2 2 Spc7 kinetochore protein LPP PF04728.13 gi|344212838|ref|YP_004797158.1| - 0.004 17.5 3.7 0.004 17.5 3.7 6.0 3 2 2 5 5 4 1 Lipoprotein leucine-zipper Fib_alpha PF08702.10 gi|344212838|ref|YP_004797158.1| - 0.0064 16.7 22.3 0.019 15.1 4.3 3.5 2 2 2 4 4 4 3 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|344212838|ref|YP_004797158.1| - 0.0091 16.3 30.2 0.24 11.7 2.2 4.7 2 2 1 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG5 PF10392.9 gi|344212838|ref|YP_004797158.1| - 0.015 15.5 9.5 0.025 14.7 0.7 3.3 2 2 1 3 3 3 0 Golgi transport complex subunit 5 KxDL PF10241.9 gi|344212838|ref|YP_004797158.1| - 0.015 15.5 4.1 0.93 9.8 0.2 3.7 2 2 1 3 3 3 0 Uncharacterized conserved protein Sec34 PF04136.15 gi|344212838|ref|YP_004797158.1| - 0.024 14.5 18.1 0.64 9.9 1.2 4.4 2 2 2 4 4 4 0 Sec34-like family UPF0242 PF06785.11 gi|344212838|ref|YP_004797158.1| - 0.027 14.6 23.0 4.2 7.4 5.8 3.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus T3SSipB PF16535.5 gi|344212838|ref|YP_004797158.1| - 0.03 14.8 31.3 1.8 9.0 11.5 3.3 1 1 2 3 3 3 0 Type III cell invasion protein SipB DUF745 PF05335.13 gi|344212838|ref|YP_004797158.1| - 0.048 13.4 33.8 0.085 12.6 2.7 4.0 1 1 2 4 4 4 0 Protein of unknown function (DUF745) DASH_Dam1 PF08653.10 gi|344212838|ref|YP_004797158.1| - 0.058 13.2 6.7 3.6 7.5 0.1 4.5 4 1 0 4 4 4 0 DASH complex subunit Dam1 TMPIT PF07851.13 gi|344212838|ref|YP_004797158.1| - 0.058 12.6 15.0 0.1 11.9 2.2 2.8 1 1 0 2 2 2 0 TMPIT-like protein ERM PF00769.19 gi|344212838|ref|YP_004797158.1| - 0.13 12.1 26.8 0.33 10.7 7.1 2.3 1 1 0 2 2 2 0 Ezrin/radixin/moesin family CENP-K PF11802.8 gi|344212838|ref|YP_004797158.1| - 0.18 11.3 8.8 4.4 6.8 8.5 2.3 1 1 0 1 1 1 0 Centromere-associated protein K FUSC PF04632.12 gi|344212838|ref|YP_004797158.1| - 0.18 10.3 12.9 0.36 9.3 4.8 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family Syntaxin-6_N PF09177.11 gi|344212838|ref|YP_004797158.1| - 0.23 12.0 27.2 3 8.4 2.9 4.2 2 2 2 4 4 4 0 Syntaxin 6, N-terminal YkyA PF10368.9 gi|344212838|ref|YP_004797158.1| - 0.24 11.0 38.9 0.27 10.9 2.1 3.7 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein NPV_P10 PF05531.12 gi|344212838|ref|YP_004797158.1| - 0.27 11.7 32.1 0.61 10.6 3.3 5.4 2 2 4 6 6 5 0 Nucleopolyhedrovirus P10 protein Prominin PF05478.11 gi|344212838|ref|YP_004797158.1| - 0.32 8.9 17.9 0.26 9.2 12.2 2.0 1 1 1 2 2 2 0 Prominin APG17 PF04108.12 gi|344212838|ref|YP_004797158.1| - 0.38 9.8 27.8 0.65 9.0 3.6 3.8 1 1 3 4 4 4 0 Autophagy protein Apg17 AIP3 PF03915.13 gi|344212838|ref|YP_004797158.1| - 0.44 9.6 26.7 0.53 9.3 10.5 2.1 1 1 1 2 2 2 0 Actin interacting protein 3 Mce4_CUP1 PF11887.8 gi|344212838|ref|YP_004797158.1| - 0.51 9.7 20.0 3 7.2 4.5 3.8 1 1 4 5 5 5 0 Cholesterol uptake porter CUP1 of Mce4, putative TPR_MLP1_2 PF07926.12 gi|344212838|ref|YP_004797158.1| - 0.64 10.1 32.1 1.6 8.8 12.7 3.2 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein Cauli_AT PF03233.13 gi|344212838|ref|YP_004797158.1| - 0.73 9.8 18.3 0.42 10.5 3.4 3.6 2 1 1 4 4 3 0 Aphid transmission protein Dynamin_M PF01031.20 gi|344212838|ref|YP_004797158.1| - 0.96 8.6 9.7 0.61 9.3 0.3 3.4 1 1 2 3 3 3 0 Dynamin central region Jnk-SapK_ap_N PF09744.9 gi|344212838|ref|YP_004797158.1| - 0.97 9.6 23.3 1.2 9.3 2.8 3.6 1 1 2 4 4 4 0 JNK_SAPK-associated protein-1 DUF489 PF04356.12 gi|344212838|ref|YP_004797158.1| - 1 9.3 7.9 1 9.4 1.4 2.9 2 2 0 2 2 2 0 Protein of unknown function (DUF489) Seryl_tRNA_N PF02403.22 gi|344212838|ref|YP_004797158.1| - 1.1 9.5 28.5 0.24 11.7 5.5 3.9 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain ING PF12998.7 gi|344212838|ref|YP_004797158.1| - 1.2 9.8 14.3 6.3 7.4 1.9 4.0 1 1 3 4 4 3 0 Inhibitor of growth proteins N-terminal histone-binding Vps51 PF08700.11 gi|344212838|ref|YP_004797158.1| - 1.3 9.1 11.9 1.1 9.4 0.3 4.5 4 1 0 5 5 4 0 Vps51/Vps67 AATF-Che1 PF13339.6 gi|344212838|ref|YP_004797158.1| - 1.3 9.7 13.4 1.6 9.5 3.4 2.9 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF2913 PF11140.8 gi|344212838|ref|YP_004797158.1| - 1.3 8.7 5.1 1.6 8.5 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2913) FH2 PF02181.23 gi|344212838|ref|YP_004797158.1| - 1.4 8.0 12.3 1.9 7.5 2.0 2.5 1 1 2 3 3 3 0 Formin Homology 2 Domain BAR_2 PF10455.9 gi|344212838|ref|YP_004797158.1| - 1.4 8.0 16.9 2.3 7.3 7.4 2.8 1 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Mod_r PF07200.13 gi|344212838|ref|YP_004797158.1| - 1.5 9.0 19.2 3.2 7.9 2.8 3.0 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein GAS PF13851.6 gi|344212838|ref|YP_004797158.1| - 1.6 8.1 17.5 4 6.7 10.3 2.9 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding BORCS7 PF16088.5 gi|344212838|ref|YP_004797158.1| - 1.8 8.8 13.7 0.64 10.3 3.2 3.2 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 7 COG2 PF06148.11 gi|344212838|ref|YP_004797158.1| - 1.9 8.6 21.5 6.8 6.8 1.0 4.5 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 RecG_N PF17190.4 gi|344212838|ref|YP_004797158.1| - 2 9.2 9.5 9.7 7.0 0.2 4.0 2 2 1 4 4 3 0 RecG N-terminal helical domain TRPM_tetra PF16519.5 gi|344212838|ref|YP_004797158.1| - 2.8 8.1 8.5 0.54 10.4 2.1 2.9 2 0 0 2 2 2 0 Tetramerisation domain of TRPM CREPT PF16566.5 gi|344212838|ref|YP_004797158.1| - 2.8 8.1 12.2 7.2 6.8 2.9 3.1 1 1 4 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour FlgN PF05130.12 gi|344212838|ref|YP_004797158.1| - 2.9 8.4 25.2 9.9 6.7 5.2 3.6 1 1 3 4 4 4 0 FlgN protein ApoO PF09769.9 gi|344212838|ref|YP_004797158.1| - 5.5 7.0 7.7 27 4.8 0.6 3.7 2 2 1 3 3 3 0 Apolipoprotein O DUF5082 PF16888.5 gi|344212838|ref|YP_004797158.1| - 6.4 7.1 31.4 3.8 7.8 0.4 4.5 2 2 1 4 4 4 0 Domain of unknown function (DUF5082) DUF2203 PF09969.9 gi|344212838|ref|YP_004797158.1| - 6.7 7.5 24.9 4.8 7.9 2.6 4.1 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) DUF4200 PF13863.6 gi|344212838|ref|YP_004797158.1| - 6.7 7.1 19.9 12 6.3 4.7 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) DUF812 PF05667.11 gi|344212838|ref|YP_004797158.1| - 6.9 5.4 31.0 0.27 10.1 11.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) RAC_head PF16717.5 gi|344212838|ref|YP_004797158.1| - 7.2 7.7 23.4 0.48 11.4 3.1 4.0 2 2 1 3 3 3 0 Ribosome-associated complex head domain Sec20 PF03908.13 gi|344212838|ref|YP_004797158.1| - 7.6 6.5 14.5 3.5 7.6 0.5 4.3 2 2 2 4 4 4 0 Sec20 DUF1759 PF03564.15 gi|344212838|ref|YP_004797158.1| - 8.3 6.3 15.5 8.5 6.3 0.4 4.3 2 2 3 5 5 5 0 Protein of unknown function (DUF1759) LMBR1 PF04791.16 gi|344212838|ref|YP_004797158.1| - 9.5 5.0 15.7 1.7e+02 0.9 15.7 2.1 1 1 0 1 1 1 0 LMBR1-like membrane protein TBCC_N PF16752.5 gi|344212838|ref|YP_004797158.1| - 9.8 6.7 25.0 0.99 9.9 1.6 4.1 1 1 3 4 4 4 0 Tubulin-specific chaperone C N-terminal domain Peptidase_M32 PF02074.15 gi|344212839|ref|YP_004797159.1| - 1.1e-173 578.5 0.0 1.2e-173 578.4 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M20 PF01546.28 gi|344212840|ref|YP_004797160.1| - 4e-26 92.0 4.8 6e-26 91.4 4.8 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344212840|ref|YP_004797160.1| - 1.9e-16 59.9 0.1 3.9e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|344212840|ref|YP_004797160.1| - 0.016 14.9 0.3 0.028 14.1 0.3 1.4 1 0 0 1 1 1 0 Peptidase family M28 T2SSE PF00437.20 gi|344212841|ref|YP_004797161.1| - 1.2e-10 40.9 0.0 2.1e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|344212841|ref|YP_004797161.1| - 0.00025 20.8 0.0 0.00046 20.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein PIN PF01850.21 gi|344212841|ref|YP_004797161.1| - 0.0012 19.3 0.0 0.0026 18.3 0.0 1.6 1 0 0 1 1 1 1 PIN domain KH_1 PF00013.29 gi|344212841|ref|YP_004797161.1| - 0.0031 17.3 0.2 0.012 15.5 0.2 2.1 1 0 0 1 1 1 1 KH domain AAA_16 PF13191.6 gi|344212841|ref|YP_004797161.1| - 0.004 17.6 0.1 0.021 15.2 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|344212841|ref|YP_004797161.1| - 0.0046 17.1 0.0 0.014 15.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|344212841|ref|YP_004797161.1| - 0.011 15.4 0.0 0.028 14.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain FliMN_C PF01052.20 gi|344212841|ref|YP_004797161.1| - 0.021 14.8 0.1 2.4 8.2 0.0 2.8 2 0 0 2 2 2 0 Type III flagellar switch regulator (C-ring) FliN C-term Thymidylate_kin PF02223.17 gi|344212841|ref|YP_004797161.1| - 0.027 14.2 0.0 0.1 12.2 0.0 1.8 1 1 1 2 2 2 0 Thymidylate kinase NTPase_1 PF03266.15 gi|344212841|ref|YP_004797161.1| - 0.037 13.9 0.0 0.083 12.8 0.0 1.6 1 0 0 1 1 1 0 NTPase ATPase PF06745.13 gi|344212841|ref|YP_004797161.1| - 0.068 12.5 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 KaiC Zeta_toxin PF06414.12 gi|344212841|ref|YP_004797161.1| - 0.077 12.3 0.0 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|344212841|ref|YP_004797161.1| - 0.1 12.9 0.0 0.29 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344212841|ref|YP_004797161.1| - 0.13 12.8 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|344212841|ref|YP_004797161.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region YqcI_YcgG PF08892.11 gi|344212842|ref|YP_004797162.1| - 2.5e-77 259.4 0.0 2.9e-77 259.2 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family Isochorismatase PF00857.20 gi|344212843|ref|YP_004797163.1| - 8.2e-39 133.6 0.0 9.4e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family HTH_24 PF13412.6 gi|344212844|ref|YP_004797164.1| - 0.0007 19.1 0.0 0.00099 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344212844|ref|YP_004797164.1| - 0.0017 18.2 0.1 0.0022 17.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344212844|ref|YP_004797164.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.4 1 1 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|344212844|ref|YP_004797164.1| - 0.016 15.1 0.1 0.039 13.9 0.1 1.8 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|344212844|ref|YP_004797164.1| - 0.037 14.0 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|344212844|ref|YP_004797164.1| - 0.052 13.2 0.1 0.076 12.7 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|344212844|ref|YP_004797164.1| - 0.12 12.9 0.0 0.16 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain ABC_tran PF00005.27 gi|344212846|ref|YP_004797166.1| - 2.5e-38 131.7 0.0 2e-20 73.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|344212846|ref|YP_004797166.1| - 4e-13 49.3 3.2 0.0012 18.3 0.0 4.2 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|344212846|ref|YP_004797166.1| - 2.5e-12 47.2 0.3 0.0099 15.7 0.0 4.2 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|344212846|ref|YP_004797166.1| - 7.1e-11 41.7 0.7 1.5e-10 40.7 0.7 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_16 PF13191.6 gi|344212846|ref|YP_004797166.1| - 6.7e-07 29.8 0.1 0.044 14.2 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA PF00004.29 gi|344212846|ref|YP_004797166.1| - 1.8e-06 28.4 0.0 0.06 13.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|344212846|ref|YP_004797166.1| - 5.7e-06 26.6 0.0 0.0071 16.6 0.0 2.7 3 0 0 3 3 2 1 AAA domain RNA_helicase PF00910.22 gi|344212846|ref|YP_004797166.1| - 7.2e-06 26.4 0.0 0.17 12.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.6 gi|344212846|ref|YP_004797166.1| - 3.1e-05 24.5 0.0 0.087 13.4 0.0 3.1 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|344212846|ref|YP_004797166.1| - 4.8e-05 23.2 0.0 0.056 13.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|344212846|ref|YP_004797166.1| - 5.7e-05 23.1 0.0 0.11 12.4 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Rad17 PF03215.15 gi|344212846|ref|YP_004797166.1| - 6.2e-05 23.0 0.0 0.19 11.6 0.0 2.7 2 1 1 3 3 3 2 Rad17 P-loop domain AAA_23 PF13476.6 gi|344212846|ref|YP_004797166.1| - 0.0001 22.9 0.3 0.22 12.0 0.1 2.4 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.12 gi|344212846|ref|YP_004797166.1| - 0.00024 20.9 0.0 0.29 10.9 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain Fer4_6 PF12837.7 gi|344212846|ref|YP_004797166.1| - 0.00034 20.5 12.6 0.0051 16.8 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_33 PF13671.6 gi|344212846|ref|YP_004797166.1| - 0.00046 20.4 0.0 0.14 12.3 0.1 2.8 2 1 0 2 2 2 1 AAA domain Fer4 PF00037.27 gi|344212846|ref|YP_004797166.1| - 0.00065 19.4 1.3 0.00065 19.4 1.3 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain NACHT PF05729.12 gi|344212846|ref|YP_004797166.1| - 0.00072 19.5 0.2 1.5 8.7 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_15 PF13175.6 gi|344212846|ref|YP_004797166.1| - 0.002 17.9 0.1 1.2 8.8 0.0 2.9 2 1 0 3 3 3 1 AAA ATPase domain NB-ARC PF00931.22 gi|344212846|ref|YP_004797166.1| - 0.003 16.8 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.6 gi|344212846|ref|YP_004797166.1| - 0.0048 17.2 0.3 2.1 8.6 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|344212846|ref|YP_004797166.1| - 0.0053 16.8 0.0 7 6.7 0.0 3.2 3 0 0 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|344212846|ref|YP_004797166.1| - 0.0057 16.4 0.2 3.6 7.4 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|344212846|ref|YP_004797166.1| - 0.0068 16.1 0.0 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain SbcCD_C PF13558.6 gi|344212846|ref|YP_004797166.1| - 0.011 15.9 0.0 7.9 6.8 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|344212846|ref|YP_004797166.1| - 0.015 15.3 0.1 5.8 6.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) Thymidylate_kin PF02223.17 gi|344212846|ref|YP_004797166.1| - 0.022 14.4 0.0 8.1 6.1 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase Fer4_10 PF13237.6 gi|344212846|ref|YP_004797166.1| - 0.03 14.4 11.2 0.42 10.8 1.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|344212846|ref|YP_004797166.1| - 0.052 13.5 1.1 15 5.4 0.0 3.1 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|344212846|ref|YP_004797166.1| - 0.063 13.4 0.0 0.76 9.9 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase Cytidylate_kin PF02224.18 gi|344212846|ref|YP_004797166.1| - 0.072 12.8 0.1 3.7 7.2 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Fer4_7 PF12838.7 gi|344212846|ref|YP_004797166.1| - 0.074 13.7 10.3 0.19 12.3 10.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain CLP1_P PF16575.5 gi|344212846|ref|YP_004797166.1| - 0.086 12.6 0.0 4.6 7.0 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF87 PF01935.17 gi|344212846|ref|YP_004797166.1| - 0.096 12.8 0.1 23 5.0 0.0 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|344212846|ref|YP_004797166.1| - 0.11 12.0 2.4 5.5 6.5 0.0 3.3 4 0 0 4 4 3 0 AAA domain TsaE PF02367.17 gi|344212846|ref|YP_004797166.1| - 0.11 12.4 0.0 28 4.7 0.0 2.8 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|344212846|ref|YP_004797166.1| - 0.14 11.9 0.6 7.6 6.2 0.0 2.7 2 0 0 2 2 2 0 AAA domain Fer4_9 PF13187.6 gi|344212846|ref|YP_004797166.1| - 0.18 12.0 8.6 0.37 11.0 8.6 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344212846|ref|YP_004797166.1| - 0.4 10.9 11.1 0.11 12.7 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|344212846|ref|YP_004797166.1| - 0.69 10.1 7.7 1.3 9.2 7.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344212846|ref|YP_004797166.1| - 6.1 7.9 11.1 16 6.6 11.1 1.8 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Peptidase_M54 PF07998.11 gi|344212848|ref|YP_004797168.1| - 7.3e-21 75.0 0.0 9.2e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|344212848|ref|YP_004797168.1| - 8.1e-05 22.5 0.0 8.1e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Matrixin DUF4953 PF16313.5 gi|344212848|ref|YP_004797168.1| - 0.00022 20.5 0.1 0.00032 20.0 0.1 1.2 1 0 0 1 1 1 1 Met-zincin Reprolysin_4 PF13583.6 gi|344212848|ref|YP_004797168.1| - 0.00038 20.2 0.0 0.00044 20.0 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|344212848|ref|YP_004797168.1| - 0.00062 20.3 0.0 0.00084 19.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|344212848|ref|YP_004797168.1| - 0.00084 19.3 0.0 0.00084 19.3 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|344212848|ref|YP_004797168.1| - 0.0012 17.8 0.1 0.0016 17.4 0.1 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_5 PF13688.6 gi|344212848|ref|YP_004797168.1| - 0.0029 17.8 0.0 0.0034 17.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Metallopep PF12044.8 gi|344212848|ref|YP_004797168.1| - 0.053 12.1 0.1 0.076 11.6 0.1 1.2 1 0 0 1 1 1 0 Putative peptidase family Zincin_1 PF06262.11 gi|344212848|ref|YP_004797168.1| - 0.062 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Zincin-like metallopeptidase Peptidase_M43 PF05572.13 gi|344212848|ref|YP_004797168.1| - 0.084 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Peptidase_M57 PF12388.8 gi|344212848|ref|YP_004797168.1| - 0.1 12.2 0.0 0.26 10.9 0.0 1.7 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase UPF0146 PF03686.13 gi|344212849|ref|YP_004797169.1| - 6.5e-31 106.9 0.0 7.9e-31 106.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) NTP_transf_3 PF12804.7 gi|344212849|ref|YP_004797169.1| - 0.0021 18.4 0.4 0.0026 18.1 0.4 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF348 PF03990.14 gi|344212849|ref|YP_004797169.1| - 0.048 13.4 1.0 0.087 12.6 0.1 1.9 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Hydrolase PF00702.26 gi|344212850|ref|YP_004797170.1| - 9.9e-13 48.9 2.6 1.5e-11 45.0 2.6 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344212850|ref|YP_004797170.1| - 1.3e-10 41.6 0.0 4.9e-09 36.5 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|344212850|ref|YP_004797170.1| - 6.1e-06 26.2 2.4 1.7e-05 24.8 0.9 2.4 2 1 0 2 2 2 1 HAD-hyrolase-like DUF4014 PF13198.6 gi|344212851|ref|YP_004797171.1| - 0.013 15.8 0.5 0.021 15.2 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4014) CAAD PF14159.6 gi|344212851|ref|YP_004797171.1| - 0.015 15.1 1.7 0.035 13.9 0.2 2.1 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase YfhO PF09586.10 gi|344212851|ref|YP_004797171.1| - 0.26 9.5 1.9 0.29 9.3 1.9 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Vma12 PF11712.8 gi|344212851|ref|YP_004797171.1| - 0.26 11.4 1.3 0.39 10.8 1.3 1.4 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase F420_oxidored PF03807.17 gi|344212852|ref|YP_004797172.1| - 2.2e-18 66.6 0.2 3.6e-18 65.9 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|344212852|ref|YP_004797172.1| - 0.0008 19.4 0.0 0.0012 18.9 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|344212852|ref|YP_004797172.1| - 0.0032 17.1 0.1 0.005 16.5 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|344212852|ref|YP_004797172.1| - 0.0035 17.6 0.3 0.011 16.0 0.2 1.9 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain Semialdhyde_dh PF01118.24 gi|344212852|ref|YP_004797172.1| - 0.0043 17.5 0.1 0.0064 16.9 0.1 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.10 gi|344212852|ref|YP_004797172.1| - 0.0069 16.3 0.1 0.012 15.5 0.1 1.4 1 0 0 1 1 1 1 KR domain DUF2184 PF09950.9 gi|344212852|ref|YP_004797172.1| - 0.13 11.6 0.3 0.19 11.1 0.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) Response_reg PF00072.24 gi|344212853|ref|YP_004797173.1| - 2.7e-21 75.8 0.0 3.9e-21 75.3 0.0 1.2 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|344212853|ref|YP_004797173.1| - 2.8e-06 27.5 0.0 9e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|344212853|ref|YP_004797173.1| - 0.0012 19.0 0.1 0.0047 17.2 0.0 1.9 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.15 gi|344212853|ref|YP_004797173.1| - 0.0023 18.2 0.0 0.0038 17.5 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_9 PF13426.7 gi|344212853|ref|YP_004797173.1| - 0.038 14.2 0.0 0.1 12.9 0.0 1.7 1 0 0 1 1 1 0 PAS domain Thioredoxin PF00085.20 gi|344212854|ref|YP_004797174.1| - 8.8e-21 73.8 0.0 1e-20 73.6 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344212854|ref|YP_004797174.1| - 4.5e-08 33.5 0.5 9.3e-07 29.3 0.5 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|344212854|ref|YP_004797174.1| - 7e-06 26.3 0.2 0.019 15.3 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|344212854|ref|YP_004797174.1| - 2.1e-05 24.3 0.1 2.4e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|344212854|ref|YP_004797174.1| - 0.00062 19.9 0.1 0.0012 19.1 0.0 1.5 1 1 1 2 2 2 1 Glutaredoxin AhpC-TSA PF00578.21 gi|344212854|ref|YP_004797174.1| - 0.00081 19.3 0.2 0.0048 16.8 0.2 1.8 1 1 0 1 1 1 1 AhpC/TSA family DSBA PF01323.20 gi|344212854|ref|YP_004797174.1| - 0.001 18.9 0.3 0.18 11.6 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_3 PF13192.6 gi|344212854|ref|YP_004797174.1| - 0.0015 18.5 0.0 0.0018 18.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|344212854|ref|YP_004797174.1| - 0.0027 17.6 0.0 0.0029 17.5 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Redoxin PF08534.10 gi|344212854|ref|YP_004797174.1| - 0.0027 17.4 0.4 0.11 12.2 0.1 2.0 1 1 1 2 2 2 1 Redoxin DUF836 PF05768.14 gi|344212854|ref|YP_004797174.1| - 0.017 15.5 0.1 0.02 15.3 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|344212854|ref|YP_004797174.1| - 0.025 14.3 0.2 0.028 14.1 0.2 1.1 1 0 0 1 1 1 0 Thioredoxin Sec61_beta PF03911.16 gi|344212855|ref|YP_004797175.1| - 7.4e-15 54.7 0.0 8.7e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Sec61beta family DUF402 PF04167.13 gi|344212857|ref|YP_004797177.1| - 6.4e-16 58.3 2.5 1.6e-15 57.0 2.5 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.23 gi|344212857|ref|YP_004797177.1| - 4.8e-05 23.6 0.8 0.00027 21.2 0.1 2.7 2 1 0 2 2 2 1 S1 RNA binding domain S1_2 PF13509.6 gi|344212857|ref|YP_004797177.1| - 0.12 12.5 0.2 0.51 10.4 0.0 2.0 2 0 0 2 2 2 0 S1 domain LVIVD PF08309.11 gi|344212858|ref|YP_004797178.1| - 3.4e-12 45.5 1.9 2.4e-06 26.8 0.2 5.7 6 1 0 6 6 6 3 LVIVD repeat Beta_propel PF09826.9 gi|344212858|ref|YP_004797178.1| - 0.0005 19.1 0.0 0.069 12.0 0.0 2.3 2 0 0 2 2 2 2 Beta propeller domain LOR PF04525.12 gi|344212859|ref|YP_004797179.1| - 8.6e-08 32.0 1.9 0.00016 21.4 0.4 3.3 1 1 3 4 4 4 3 LURP-one-related Scramblase PF03803.15 gi|344212859|ref|YP_004797179.1| - 0.035 13.4 0.1 11 5.3 0.1 2.3 1 1 0 1 1 1 0 Scramblase UvrA_inter PF17760.1 gi|344212860|ref|YP_004797180.1| - 6.7e-32 109.8 0.1 3.3e-31 107.6 0.0 2.3 2 0 0 2 2 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|344212860|ref|YP_004797180.1| - 3.1e-29 101.5 0.2 1.4e-26 93.0 0.0 3.4 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|344212860|ref|YP_004797180.1| - 1.4e-21 77.4 0.0 1.3e-10 42.0 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|344212860|ref|YP_004797180.1| - 1e-11 44.7 0.0 0.23 10.8 0.0 4.1 3 1 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344212860|ref|YP_004797180.1| - 7.3e-09 35.2 0.0 0.0024 17.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344212860|ref|YP_004797180.1| - 1.2e-06 29.0 0.8 0.026 14.9 0.0 3.5 4 0 0 4 4 4 2 AAA ATPase domain AAA_15 PF13175.6 gi|344212860|ref|YP_004797180.1| - 8.2e-06 25.8 0.0 0.032 13.9 0.0 3.8 4 0 0 4 4 4 1 AAA ATPase domain AAA_21 PF13304.6 gi|344212860|ref|YP_004797180.1| - 1.1e-05 25.4 9.2 0.021 14.7 0.1 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|344212860|ref|YP_004797180.1| - 1.9e-05 24.9 0.1 0.22 11.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|344212860|ref|YP_004797180.1| - 8.3e-05 22.0 0.1 0.096 12.0 0.0 3.1 3 0 0 3 3 3 1 KaiC AAA_25 PF13481.6 gi|344212860|ref|YP_004797180.1| - 8.4e-05 22.2 0.0 0.78 9.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.6 gi|344212860|ref|YP_004797180.1| - 0.00018 22.1 0.0 0.24 11.9 0.0 2.8 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|344212860|ref|YP_004797180.1| - 0.00019 21.4 0.0 0.77 9.6 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase DnaJ_CXXCXGXG PF00684.19 gi|344212860|ref|YP_004797180.1| - 0.00043 20.6 11.8 0.068 13.5 1.9 3.8 4 0 0 4 4 3 1 DnaJ central domain Zn-ribbon_8 PF09723.10 gi|344212860|ref|YP_004797180.1| - 0.0005 20.1 14.9 1.3 9.2 0.5 4.5 4 0 0 4 4 4 2 Zinc ribbon domain AAA_33 PF13671.6 gi|344212860|ref|YP_004797180.1| - 0.0007 19.8 0.0 2.2 8.4 0.0 3.3 4 0 0 4 4 3 2 AAA domain AAA_18 PF13238.6 gi|344212860|ref|YP_004797180.1| - 0.0021 18.6 0.1 2.9 8.5 0.0 3.1 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.6 gi|344212860|ref|YP_004797180.1| - 0.0054 16.8 0.0 1.5 8.9 0.0 2.9 3 0 0 3 3 3 1 AAA domain APS_kinase PF01583.20 gi|344212860|ref|YP_004797180.1| - 0.0058 16.5 0.1 5.3 6.9 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase cobW PF02492.19 gi|344212860|ref|YP_004797180.1| - 0.011 15.3 0.2 1.3 8.6 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 gi|344212860|ref|YP_004797180.1| - 0.018 14.3 0.0 3.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|344212860|ref|YP_004797180.1| - 0.018 15.0 0.0 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.18 gi|344212860|ref|YP_004797180.1| - 0.031 14.0 0.0 1 9.0 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|344212860|ref|YP_004797180.1| - 0.071 12.8 0.1 5.4 6.7 0.1 2.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|344212860|ref|YP_004797180.1| - 0.079 12.7 0.1 9.1 6.0 0.0 3.3 4 0 0 4 4 3 0 AAA domain ATPase_2 PF01637.18 gi|344212860|ref|YP_004797180.1| - 0.1 12.5 0.0 20 5.0 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|344212860|ref|YP_004797180.1| - 0.13 11.4 0.0 1.5 8.0 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|344212860|ref|YP_004797180.1| - 0.2 12.0 0.0 6.3 7.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Zn_Tnp_IS91 PF14319.6 gi|344212860|ref|YP_004797180.1| - 0.26 11.4 5.3 1.5 8.9 0.0 3.2 4 0 0 4 4 3 0 Transposase zinc-binding domain DZR PF12773.7 gi|344212860|ref|YP_004797180.1| - 0.42 10.7 9.7 5.2 7.2 0.3 4.1 4 0 0 4 4 4 0 Double zinc ribbon SLATT_2 PF18183.1 gi|344212861|ref|YP_004797181.1| - 0.042 13.6 0.4 0.042 13.6 0.4 1.8 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 2 Peptidase_S9 PF00326.21 gi|344212862|ref|YP_004797182.1| - 3.7e-44 150.7 0.1 5.4e-44 150.2 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|344212862|ref|YP_004797182.1| - 1.3e-05 25.0 0.3 0.16 11.5 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9_N PF02897.15 gi|344212862|ref|YP_004797182.1| - 6.9e-05 21.8 0.2 0.00017 20.6 0.2 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|344212862|ref|YP_004797182.1| - 0.00013 21.4 0.2 0.03 13.6 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Pectate_lyase22 PF14583.6 gi|344212862|ref|YP_004797182.1| - 0.00015 20.6 0.4 0.009 14.7 0.2 2.4 2 0 0 2 2 2 1 Oligogalacturonate lyase Peptidase_S28 PF05577.12 gi|344212862|ref|YP_004797182.1| - 0.00027 19.9 0.0 0.00042 19.2 0.0 1.2 1 0 0 1 1 1 1 Serine carboxypeptidase S28 PD40 PF07676.12 gi|344212862|ref|YP_004797182.1| - 0.00047 20.0 0.0 0.19 11.7 0.0 4.1 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Kelch_4 PF13418.6 gi|344212862|ref|YP_004797182.1| - 0.00094 19.1 0.1 0.3 11.1 0.0 3.3 3 0 0 3 3 3 1 Galactose oxidase, central domain DLH PF01738.18 gi|344212862|ref|YP_004797182.1| - 0.0013 18.3 0.0 0.0031 17.1 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family DPPIV_N PF00930.21 gi|344212862|ref|YP_004797182.1| - 0.0097 14.7 0.0 8.7 5.0 0.0 3.3 3 1 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.12 gi|344212862|ref|YP_004797182.1| - 0.016 13.9 0.0 0.084 11.5 0.0 1.9 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|344212862|ref|YP_004797182.1| - 0.026 14.2 0.7 0.11 12.2 0.8 1.8 1 1 1 2 2 2 0 alpha/beta hydrolase fold mRNA_cap_enzyme PF01331.19 gi|344212862|ref|YP_004797182.1| - 0.061 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain Sortilin-Vps10 PF15902.5 gi|344212863|ref|YP_004797183.1| - 1e-11 44.3 0.0 8.2e-05 21.6 0.0 2.1 2 0 0 2 2 2 2 Sortilin, neurotensin receptor 3, PSII_BNR PF14870.6 gi|344212863|ref|YP_004797183.1| - 2.6e-06 26.9 0.4 0.00084 18.7 0.2 2.9 2 1 2 4 4 4 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.20 gi|344212863|ref|YP_004797183.1| - 9.6e-06 24.9 19.8 0.24 11.6 0.6 5.7 5 0 0 5 5 5 3 BNR/Asp-box repeat DUF4185 PF13810.6 gi|344212863|ref|YP_004797183.1| - 0.14 11.3 5.9 0.3 10.3 0.2 3.1 1 1 3 4 4 4 0 Domain of unknown function (DUF4185) BNR_3 PF13859.6 gi|344212863|ref|YP_004797183.1| - 3.1 7.0 4.2 0.85 8.9 0.3 2.0 3 0 0 3 3 3 0 BNR repeat-like domain FAD_binding_3 PF01494.19 gi|344212865|ref|YP_004797185.1| - 2.1e-17 63.4 2.5 1.5e-10 40.9 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|344212865|ref|YP_004797185.1| - 7.3e-10 38.4 0.3 1.1e-06 28.0 0.3 2.1 1 1 0 1 1 1 1 Lycopene cyclase protein DAO PF01266.24 gi|344212865|ref|YP_004797185.1| - 5.8e-09 36.0 2.2 6.7e-05 22.6 0.1 2.8 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|344212865|ref|YP_004797185.1| - 1.6e-06 27.1 0.0 5.1e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|344212865|ref|YP_004797185.1| - 2.7e-06 26.8 0.1 5.3e-06 25.9 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|344212865|ref|YP_004797185.1| - 2.9e-06 26.9 1.1 4.3e-06 26.3 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|344212865|ref|YP_004797185.1| - 1.4e-05 24.4 1.7 2e-05 23.9 0.7 1.7 1 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344212865|ref|YP_004797185.1| - 0.00035 20.7 1.2 0.00056 20.1 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|344212865|ref|YP_004797185.1| - 0.00063 19.1 0.1 0.0028 17.0 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344212865|ref|YP_004797185.1| - 0.0017 17.5 0.1 0.0024 17.0 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|344212865|ref|YP_004797185.1| - 0.0031 16.8 0.1 0.0049 16.1 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.14 gi|344212865|ref|YP_004797185.1| - 0.0063 15.4 0.6 1.5 7.5 0.2 2.5 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|344212865|ref|YP_004797185.1| - 0.038 14.6 0.4 0.81 10.3 0.1 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|344212865|ref|YP_004797185.1| - 0.055 13.4 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|344212865|ref|YP_004797185.1| - 0.073 13.5 0.1 0.14 12.6 0.1 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding AI-2E_transport PF01594.16 gi|344212866|ref|YP_004797186.1| - 1.8e-35 122.7 35.8 5.1e-31 108.0 21.1 2.0 2 0 0 2 2 2 2 AI-2E family transporter Rhodanese PF00581.20 gi|344212867|ref|YP_004797187.1| - 7.9e-33 113.2 0.0 5.8e-17 62.2 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|344212868|ref|YP_004797188.1| - 2.4e-35 121.3 0.3 7.2e-18 65.1 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Beta-Casp PF10996.8 gi|344212870|ref|YP_004797190.1| - 6.4e-13 49.0 0.0 1.2e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|344212870|ref|YP_004797190.1| - 1.2e-12 47.6 0.0 3.6e-12 46.0 0.0 1.8 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|344212870|ref|YP_004797190.1| - 1.4e-07 31.3 1.2 3e-07 30.2 0.8 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|344212870|ref|YP_004797190.1| - 8.7e-07 29.1 7.4 8.7e-07 29.1 7.4 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|344212870|ref|YP_004797190.1| - 3.5e-05 23.3 0.0 7.1e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|344212870|ref|YP_004797190.1| - 0.011 15.7 0.0 0.028 14.3 0.0 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Rhodanese PF00581.20 gi|344212870|ref|YP_004797190.1| - 0.12 12.9 0.0 0.38 11.3 0.0 1.8 2 0 0 2 2 2 0 Rhodanese-like domain RHH_1 PF01402.21 gi|344212871|ref|YP_004797191.1| - 5.8e-05 22.9 1.5 7.8e-05 22.5 1.5 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RsdA_SigD_bd PF16751.5 gi|344212871|ref|YP_004797191.1| - 7.9 6.8 12.3 0.25 11.6 6.3 1.6 2 1 0 2 2 2 0 Anti-sigma-D factor RsdA to sigma factor binding region DUF2238 PF09997.9 gi|344212872|ref|YP_004797192.1| - 0.0021 17.8 2.7 0.0021 17.8 2.7 2.8 2 1 0 2 2 2 1 Predicted membrane protein (DUF2238) Cupin_2 PF07883.11 gi|344212873|ref|YP_004797193.1| - 3.1e-18 65.2 0.9 3.9e-18 64.9 0.9 1.1 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|344212873|ref|YP_004797193.1| - 3.2e-08 33.6 0.0 3.6e-08 33.4 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|344212873|ref|YP_004797193.1| - 9.4e-06 25.6 0.1 1.2e-05 25.3 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|344212873|ref|YP_004797193.1| - 0.017 14.8 0.0 0.026 14.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|344212873|ref|YP_004797193.1| - 0.096 12.4 0.0 0.097 12.4 0.0 1.1 1 0 0 1 1 1 0 Cupin HTH_16 PF12645.7 gi|344212874|ref|YP_004797194.1| - 0.17 12.0 0.0 1.1 9.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF21 PF01595.20 gi|344212875|ref|YP_004797195.1| - 1.1e-26 93.6 0.0 1.6e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|344212875|ref|YP_004797195.1| - 6.5e-11 42.5 1.2 8.2e-09 35.8 0.1 2.5 2 0 0 2 2 2 2 CBS domain adh_short PF00106.25 gi|344212876|ref|YP_004797196.1| - 2.5e-28 98.9 0.0 1.8e-27 96.1 0.0 2.0 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344212876|ref|YP_004797196.1| - 7.1e-17 61.7 0.4 1.1e-16 61.2 0.3 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344212876|ref|YP_004797196.1| - 6.9e-06 26.1 0.1 1e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 KR domain DUF836 PF05768.14 gi|344212877|ref|YP_004797197.1| - 3e-15 56.4 0.0 3.5e-15 56.2 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|344212877|ref|YP_004797197.1| - 4.8e-08 33.1 0.2 1.2e-07 31.8 0.1 1.7 1 1 1 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|344212877|ref|YP_004797197.1| - 7.1e-06 26.0 0.0 8.7e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|344212877|ref|YP_004797197.1| - 0.022 14.6 0.0 0.13 12.1 0.0 1.7 1 1 1 2 2 2 0 F plasmid transfer operon protein KaiB PF07689.12 gi|344212877|ref|YP_004797197.1| - 0.067 12.9 0.0 0.096 12.4 0.0 1.2 1 0 0 1 1 1 0 KaiB domain Bac_rhodopsin PF01036.18 gi|344212878|ref|YP_004797198.1| - 0.0055 16.3 1.0 0.0064 16.1 1.0 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein TMP-TENI PF02581.17 gi|344212879|ref|YP_004797199.1| - 1.4e-60 203.7 4.0 1.7e-60 203.4 4.0 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase ThiG PF05690.14 gi|344212879|ref|YP_004797199.1| - 1.5e-07 31.0 4.9 2.2e-07 30.5 4.9 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|344212879|ref|YP_004797199.1| - 5.7e-07 29.2 8.7 8.5e-07 28.7 8.7 1.2 1 1 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.21 gi|344212879|ref|YP_004797199.1| - 0.004 16.4 1.2 0.004 16.4 1.2 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase DUF348 PF03990.14 gi|344212879|ref|YP_004797199.1| - 1.1 9.1 5.9 12 5.7 0.3 2.9 2 1 0 2 2 2 0 G5-linked-Ubiquitin-like domain PhoU PF01895.19 gi|344212880|ref|YP_004797200.1| - 4.6e-13 49.4 2.6 1e-10 42.0 0.2 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|344212880|ref|YP_004797200.1| - 9.5e-07 28.6 0.0 1.9e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin IMPDH PF00478.25 gi|344212880|ref|YP_004797200.1| - 0.012 14.7 2.1 0.041 12.9 0.1 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DUF892 PF05974.12 gi|344212880|ref|YP_004797200.1| - 0.035 14.1 0.8 0.12 12.4 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF892) Filo_VP35 PF02097.15 gi|344212880|ref|YP_004797200.1| - 0.044 12.9 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 Filoviridae VP35 PSK_trans_fac PF07704.11 gi|344212880|ref|YP_004797200.1| - 5.1 7.9 10.2 0.27 12.0 0.9 3.1 3 1 0 3 3 3 0 Rv0623-like transcription factor PhoU PF01895.19 gi|344212881|ref|YP_004797201.1| - 1e-36 125.3 13.5 1.9e-20 73.1 1.7 2.1 2 0 0 2 2 2 2 PhoU domain DUF148 PF02520.17 gi|344212881|ref|YP_004797201.1| - 0.027 14.6 0.0 0.052 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF148 Rep_fac_C PF08542.11 gi|344212881|ref|YP_004797201.1| - 0.052 14.0 0.3 1.7 9.1 0.0 2.9 2 2 1 3 3 3 0 Replication factor C C-terminal domain DUF1484 PF07363.11 gi|344212881|ref|YP_004797201.1| - 1.3 10.0 5.1 11 7.1 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1484) ABC_tran PF00005.27 gi|344212882|ref|YP_004797202.1| - 2.3e-31 109.1 0.0 4.3e-31 108.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212882|ref|YP_004797202.1| - 2.8e-10 40.5 0.0 2.6e-05 24.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344212882|ref|YP_004797202.1| - 3.3e-08 33.2 0.3 5.6e-06 25.9 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344212882|ref|YP_004797202.1| - 9.7e-06 25.5 0.0 6.9e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|344212882|ref|YP_004797202.1| - 0.00035 21.0 0.1 0.00097 19.6 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344212882|ref|YP_004797202.1| - 0.00043 20.6 0.0 0.0014 18.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344212882|ref|YP_004797202.1| - 0.0012 18.8 0.0 0.0028 17.6 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|344212882|ref|YP_004797202.1| - 0.0014 18.3 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344212882|ref|YP_004797202.1| - 0.0077 16.8 0.0 0.027 15.0 0.0 1.9 1 1 1 2 2 2 1 AAA domain Rad17 PF03215.15 gi|344212882|ref|YP_004797202.1| - 0.0079 16.1 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|344212882|ref|YP_004797202.1| - 0.013 15.0 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain DeoRC PF00455.22 gi|344212882|ref|YP_004797202.1| - 0.016 15.2 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|344212882|ref|YP_004797202.1| - 0.027 14.2 0.1 0.95 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|344212882|ref|YP_004797202.1| - 0.046 13.9 0.0 0.085 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NYN_YacP PF05991.11 gi|344212882|ref|YP_004797202.1| - 0.098 12.6 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 YacP-like NYN domain PRK PF00485.18 gi|344212882|ref|YP_004797202.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family BPD_transp_1 PF00528.22 gi|344212883|ref|YP_004797203.1| - 1.7e-16 60.5 18.7 1.7e-16 60.5 18.7 7.6 2 2 2 6 6 6 1 Binding-protein-dependent transport system inner membrane component DUF2371 PF10177.9 gi|344212883|ref|YP_004797203.1| - 0.17 12.0 2.2 0.66 10.2 0.2 2.9 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) BPD_transp_1 PF00528.22 gi|344212884|ref|YP_004797204.1| - 2.4e-19 69.8 10.7 2.4e-19 69.8 10.7 3.0 2 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component Cyt_bd_oxida_II PF02322.15 gi|344212884|ref|YP_004797204.1| - 1.4 8.2 35.9 0.013 14.9 17.7 2.7 1 1 0 2 2 2 0 Cytochrome bd terminal oxidase subunit II PBP_like_2 PF12849.7 gi|344212885|ref|YP_004797205.1| - 2.3e-18 66.8 0.6 2.3e-18 66.8 0.6 2.3 1 1 0 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|344212885|ref|YP_004797205.1| - 1.2e-11 44.1 0.1 1.2e-11 44.1 0.1 1.5 2 0 0 2 2 2 1 PBP superfamily domain TAT_signal PF10518.9 gi|344212885|ref|YP_004797205.1| - 0.21 11.5 1.2 0.48 10.4 1.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.19 gi|344212886|ref|YP_004797206.1| - 1.2e-21 77.0 3.8 7e-18 64.9 0.5 2.6 2 1 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|344212886|ref|YP_004797206.1| - 3.5e-09 36.4 0.0 6.9e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF948 PF06103.11 gi|344212886|ref|YP_004797206.1| - 0.011 16.0 2.9 5.5 7.3 0.3 3.4 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Bep_C_terminal PF17841.1 gi|344212886|ref|YP_004797206.1| - 0.018 15.2 0.0 0.042 14.1 0.0 1.7 1 0 0 1 1 1 0 BID domain of Bartonella effector protein (Bep) FAM184 PF15665.5 gi|344212886|ref|YP_004797206.1| - 0.044 13.6 0.4 0.087 12.6 0.4 1.4 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B ABC_tran_CTD PF16326.5 gi|344212887|ref|YP_004797207.1| - 0.13 12.6 1.7 2.5 8.4 0.3 2.7 2 1 0 2 2 2 0 ABC transporter C-terminal domain Rhodanese PF00581.20 gi|344212888|ref|YP_004797208.1| - 7.7e-13 48.9 0.0 9.9e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.28 gi|344212889|ref|YP_004797209.1| - 8.8e-13 48.4 0.3 1.3e-12 47.9 0.3 1.2 1 0 0 1 1 1 1 NUDIX domain Thioredoxin_5 PF13743.6 gi|344212891|ref|YP_004797211.1| - 0.19 11.4 0.8 0.24 11.1 0.1 1.4 2 0 0 2 2 2 0 Thioredoxin zf-C2H2_9 PF16293.5 gi|344212892|ref|YP_004797212.1| - 0.00061 19.6 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) Acetyltransf_1 PF00583.25 gi|344212893|ref|YP_004797213.1| - 3.5e-19 69.2 0.0 4.4e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|344212893|ref|YP_004797213.1| - 9.1e-12 45.2 0.0 1.2e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344212893|ref|YP_004797213.1| - 5.8e-11 42.4 0.0 7e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344212893|ref|YP_004797213.1| - 1.4e-08 34.9 0.0 2.2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344212893|ref|YP_004797213.1| - 5.9e-07 29.4 0.0 9e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|344212893|ref|YP_004797213.1| - 1.8e-05 25.5 0.0 2.1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|344212893|ref|YP_004797213.1| - 4.4e-05 23.2 0.0 7.2e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344212893|ref|YP_004797213.1| - 0.0013 18.9 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|344212893|ref|YP_004797213.1| - 0.032 13.9 0.0 0.06 13.1 0.0 1.4 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_13 PF13880.6 gi|344212893|ref|YP_004797213.1| - 0.041 13.9 0.0 0.1 12.6 0.0 1.6 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase GNAT_acetyltran PF12746.7 gi|344212893|ref|YP_004797213.1| - 0.089 12.3 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Aconitase PF00330.20 gi|344212894|ref|YP_004797214.1| - 5e-106 355.5 0.3 3.8e-104 349.3 0.3 2.3 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|344212894|ref|YP_004797214.1| - 1.6e-20 73.8 0.0 3e-20 72.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|344212894|ref|YP_004797214.1| - 0.012 14.4 0.0 0.018 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Barwin PF00967.17 gi|344212894|ref|YP_004797214.1| - 0.077 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Barwin family dUTPase PF00692.19 gi|344212895|ref|YP_004797215.1| - 5.2e-10 39.1 0.0 6.7e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase HTH_10 PF04967.12 gi|344212896|ref|YP_004797216.1| - 5.4e-15 54.9 0.0 8.9e-15 54.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344212896|ref|YP_004797216.1| - 0.00022 21.1 0.3 0.00038 20.3 0.3 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|344212896|ref|YP_004797216.1| - 0.0011 18.8 0.1 0.0066 16.3 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|344212896|ref|YP_004797216.1| - 0.011 15.3 0.1 0.021 14.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344212896|ref|YP_004797216.1| - 0.012 15.5 1.3 0.016 15.0 0.2 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|344212896|ref|YP_004797216.1| - 0.019 14.5 0.1 0.04 13.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HalOD1 PF18545.1 gi|344212897|ref|YP_004797217.1| - 2e-10 40.8 4.4 2.4e-10 40.5 4.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 MGS PF02142.22 gi|344212898|ref|YP_004797218.1| - 3.7e-15 55.9 0.0 4.4e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain QueC PF06508.13 gi|344212899|ref|YP_004797219.1| - 1.5e-68 230.4 0.0 1.7e-68 230.2 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|344212899|ref|YP_004797219.1| - 0.0015 18.1 0.0 0.0033 17.0 0.0 1.6 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|344212899|ref|YP_004797219.1| - 0.0038 16.1 0.0 0.005 15.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|344212899|ref|YP_004797219.1| - 0.17 10.9 0.0 0.28 10.3 0.0 1.5 1 1 0 1 1 1 0 NAD synthase Radical_SAM PF04055.21 gi|344212900|ref|YP_004797220.1| - 5.3e-24 85.5 3.9 8.5e-24 84.8 3.9 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|344212900|ref|YP_004797220.1| - 1.7e-13 50.7 0.0 3.6e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|344212900|ref|YP_004797220.1| - 7.7e-09 35.9 0.0 1.5e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|344212900|ref|YP_004797220.1| - 0.0073 16.3 0.5 0.025 14.5 0.5 1.8 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PTPS PF01242.19 gi|344212901|ref|YP_004797221.1| - 6e-23 81.1 0.0 7.5e-23 80.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase baeRF_family10 PF18854.1 gi|344212901|ref|YP_004797221.1| - 0.017 15.4 0.4 0.06 13.6 0.1 1.8 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Halo_GVPC PF05465.13 gi|344212903|ref|YP_004797223.1| - 3.3 8.1 10.6 0.97 9.7 2.6 3.5 2 1 1 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat Peptidase_M28 PF04389.17 gi|344212904|ref|YP_004797224.1| - 6e-35 120.7 0.3 8.6e-35 120.2 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|344212904|ref|YP_004797224.1| - 2e-14 53.4 0.0 5.1e-14 52.1 0.0 1.7 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.14 gi|344212904|ref|YP_004797224.1| - 7.7e-06 25.1 0.7 1.3e-05 24.4 0.3 1.5 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|344212904|ref|YP_004797224.1| - 1.9e-05 24.5 1.0 4.7e-05 23.2 1.0 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Nicastrin PF05450.15 gi|344212904|ref|YP_004797224.1| - 0.043 13.3 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Nicastrin Tmemb_9 PF05434.11 gi|344212906|ref|YP_004797226.1| - 0.69 9.8 1.2 0.98 9.3 1.2 1.1 1 0 0 1 1 1 0 TMEM9 DUF3687 PF12459.8 gi|344212906|ref|YP_004797226.1| - 0.71 9.4 2.1 0.72 9.4 0.7 1.7 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein Fer2 PF00111.27 gi|344212907|ref|YP_004797227.1| - 7e-19 67.6 0.2 9e-19 67.2 0.2 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|344212907|ref|YP_004797227.1| - 0.0082 16.2 0.1 0.018 15.1 0.1 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.11 gi|344212908|ref|YP_004797228.1| - 5e-199 661.8 0.5 5.7e-199 661.6 0.5 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|344212908|ref|YP_004797228.1| - 0.0016 17.8 0.0 0.017 14.4 0.0 2.3 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Epimerase PF01370.21 gi|344212909|ref|YP_004797229.1| - 2.3e-21 76.3 0.1 4.2e-21 75.5 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|344212909|ref|YP_004797229.1| - 2.9e-17 63.1 0.5 6.9e-13 48.7 0.1 2.3 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|344212909|ref|YP_004797229.1| - 7.3e-08 31.7 0.0 1e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|344212909|ref|YP_004797229.1| - 1.5e-06 27.5 0.0 2.2e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|344212909|ref|YP_004797229.1| - 4.3e-06 26.8 0.1 1.2e-05 25.3 0.0 1.9 2 1 0 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|344212909|ref|YP_004797229.1| - 0.0093 15.1 0.0 0.15 11.2 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein LpxI_N PF17930.1 gi|344212909|ref|YP_004797229.1| - 0.011 15.7 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 LpxI N-terminal domain KR PF08659.10 gi|344212909|ref|YP_004797229.1| - 0.023 14.6 0.3 0.1 12.5 0.1 1.9 2 0 0 2 2 2 0 KR domain NmrA PF05368.13 gi|344212909|ref|YP_004797229.1| - 0.031 13.8 0.1 0.046 13.3 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_10 PF13460.6 gi|344212910|ref|YP_004797230.1| - 2.9e-17 63.2 0.0 4.8e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|344212910|ref|YP_004797230.1| - 6.5e-12 45.4 0.0 1.9e-11 43.9 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|344212910|ref|YP_004797230.1| - 1.6e-11 44.2 0.0 2.2e-11 43.8 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|344212910|ref|YP_004797230.1| - 1e-05 24.7 0.0 1.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|344212910|ref|YP_004797230.1| - 1.6e-05 24.2 0.0 0.00013 21.1 0.0 2.0 2 0 0 2 2 2 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|344212910|ref|YP_004797230.1| - 0.00092 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|344212910|ref|YP_004797230.1| - 0.0058 16.1 0.0 0.0088 15.5 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.24 gi|344212910|ref|YP_004797230.1| - 0.011 16.2 0.0 0.035 14.6 0.0 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain Glyco_trans_4_4 PF13579.6 gi|344212910|ref|YP_004797230.1| - 0.016 15.6 0.4 1.1 9.7 0.0 2.6 3 0 0 3 3 3 0 Glycosyl transferase 4-like domain KR PF08659.10 gi|344212910|ref|YP_004797230.1| - 0.017 15.1 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 KR domain DapB_N PF01113.20 gi|344212910|ref|YP_004797230.1| - 0.028 14.6 0.0 0.049 13.8 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PAC2 PF09754.9 gi|344212910|ref|YP_004797230.1| - 0.045 13.8 0.0 0.088 12.8 0.0 1.5 1 1 0 1 1 1 0 PAC2 family NAD_binding_4 PF07993.12 gi|344212910|ref|YP_004797230.1| - 0.08 12.1 0.0 0.18 10.9 0.0 1.7 2 0 0 2 2 2 0 Male sterility protein ApbA PF02558.16 gi|344212910|ref|YP_004797230.1| - 0.14 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Fer2 PF00111.27 gi|344212911|ref|YP_004797231.1| - 4e-12 45.9 0.3 9.2e-12 44.7 0.3 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pilin_N PF07790.11 gi|344212912|ref|YP_004797232.1| - 3e-12 47.3 2.4 5.5e-12 46.4 2.4 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Myco_19_kDa PF05481.12 gi|344212912|ref|YP_004797232.1| - 0.032 14.5 1.0 0.051 13.8 1.0 1.3 1 1 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen Rep_1B PF17873.1 gi|344212912|ref|YP_004797232.1| - 1.1 9.2 0.0 1.1 9.2 0.0 3.3 4 0 0 4 4 4 0 Replicase polyprotein 1ab NAD_binding_2 PF03446.15 gi|344212913|ref|YP_004797233.1| - 1.9e-38 132.1 0.0 2.6e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|344212913|ref|YP_004797233.1| - 1.5e-24 86.9 0.0 2e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|344212913|ref|YP_004797233.1| - 2.3e-06 28.1 0.1 3.6e-06 27.5 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|344212913|ref|YP_004797233.1| - 8.9e-06 26.0 0.1 1.7e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|344212913|ref|YP_004797233.1| - 2.4e-05 24.3 0.0 3.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344212913|ref|YP_004797233.1| - 0.00037 19.9 0.0 0.00053 19.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|344212913|ref|YP_004797233.1| - 0.0017 18.0 0.0 0.0042 16.7 0.1 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_11 PF14833.6 gi|344212913|ref|YP_004797233.1| - 0.0077 16.5 0.0 0.047 13.9 0.0 2.1 1 1 1 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|344212913|ref|YP_004797233.1| - 0.011 16.0 0.7 0.14 12.5 0.7 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|344212913|ref|YP_004797233.1| - 0.023 15.0 0.0 0.042 14.2 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|344212913|ref|YP_004797233.1| - 0.027 14.6 0.8 0.052 13.7 0.8 1.6 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Peptidase_M29 PF02073.15 gi|344212914|ref|YP_004797234.1| - 6.1e-60 203.1 0.0 7.3e-60 202.9 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF2099 PF09872.9 gi|344212914|ref|YP_004797234.1| - 0.089 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2099) T2SSF PF00482.23 gi|344212915|ref|YP_004797235.1| - 1.6e-16 60.4 1.9 1.1e-10 41.5 0.3 3.9 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.6 gi|344212915|ref|YP_004797235.1| - 0.012 14.5 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|344212916|ref|YP_004797236.1| - 1e-42 146.1 0.0 2.6e-42 144.8 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|344212916|ref|YP_004797236.1| - 0.0016 18.8 0.0 0.025 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain ABC_tran PF00005.27 gi|344212916|ref|YP_004797236.1| - 0.0031 18.0 0.0 0.015 15.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_15 PF13175.6 gi|344212916|ref|YP_004797236.1| - 0.0092 15.7 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|344212916|ref|YP_004797236.1| - 0.011 16.1 0.0 0.039 14.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|344212916|ref|YP_004797236.1| - 0.03 13.8 0.0 0.056 13.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_29 PF13555.6 gi|344212916|ref|YP_004797236.1| - 0.052 13.3 0.1 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344212916|ref|YP_004797236.1| - 0.052 14.1 0.3 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344212916|ref|YP_004797236.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma70_r1_1 PF03979.14 gi|344212916|ref|YP_004797236.1| - 0.11 12.5 0.9 1.2 9.2 0.0 2.7 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 ABM PF03992.16 gi|344212916|ref|YP_004797236.1| - 0.49 10.5 2.0 3 8.0 0.2 3.0 3 0 0 3 3 3 0 Antibiotic biosynthesis monooxygenase ATPase PF06745.13 gi|344212917|ref|YP_004797237.1| - 1.1e-16 60.9 0.1 2.2e-16 59.9 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|344212917|ref|YP_004797237.1| - 1.2e-07 31.5 0.0 1.7e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344212917|ref|YP_004797237.1| - 7.8e-05 23.0 0.0 0.00012 22.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|344212917|ref|YP_004797237.1| - 0.0009 19.2 0.0 0.0048 16.8 0.0 1.9 1 1 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|344212917|ref|YP_004797237.1| - 0.0028 18.1 0.0 0.004 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.11 gi|344212917|ref|YP_004797237.1| - 0.02 14.1 0.2 0.049 12.9 0.2 1.7 1 1 0 1 1 1 0 Rad51 TsaE PF02367.17 gi|344212917|ref|YP_004797237.1| - 0.031 14.3 0.0 0.078 13.0 0.0 1.7 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|344212917|ref|YP_004797237.1| - 0.031 14.0 0.0 0.061 13.1 0.0 1.4 1 1 0 1 1 1 0 IstB-like ATP binding protein PAXNEB PF05625.11 gi|344212917|ref|YP_004797237.1| - 0.083 12.0 0.1 1.6 7.8 0.1 2.0 2 0 0 2 2 2 0 PAXNEB protein FF PF01846.19 gi|344212917|ref|YP_004797237.1| - 0.086 13.0 0.4 0.44 10.8 0.1 2.1 2 0 0 2 2 2 0 FF domain DUF3843 PF12954.7 gi|344212917|ref|YP_004797237.1| - 0.18 10.7 0.1 0.39 9.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3843) Arch_flagellin PF01917.16 gi|344212918|ref|YP_004797238.1| - 1.6e-21 77.2 2.4 1.8e-21 77.0 2.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|344212918|ref|YP_004797238.1| - 1.5e-06 28.3 0.8 2e-06 28.0 0.8 1.3 1 0 0 1 1 1 1 CARDB RskA PF10099.9 gi|344212918|ref|YP_004797238.1| - 0.17 12.2 0.1 20 5.4 0.0 2.0 1 1 1 2 2 2 0 Anti-sigma-K factor rskA Arch_flagellin PF01917.16 gi|344212919|ref|YP_004797239.1| - 5.3e-12 46.2 5.1 6e-12 46.0 5.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin UCR_UQCRX_QCR9 PF05365.12 gi|344212919|ref|YP_004797239.1| - 0.17 11.8 0.7 0.34 10.9 0.7 1.5 1 0 0 1 1 1 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like Arch_fla_DE PF04659.13 gi|344212920|ref|YP_004797240.1| - 3e-28 97.5 0.0 6.1e-28 96.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|344212920|ref|YP_004797240.1| - 2.5e-21 75.8 1.9 2.5e-21 75.8 1.9 1.7 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Trypan_PARP PF05887.11 gi|344212920|ref|YP_004797240.1| - 0.0011 18.9 30.5 0.0011 18.9 30.5 3.0 2 1 1 3 3 2 1 Procyclic acidic repetitive protein (PARP) Dynamitin PF04912.14 gi|344212920|ref|YP_004797240.1| - 0.0047 16.3 0.3 0.011 15.1 0.3 1.5 1 0 0 1 1 1 1 Dynamitin Sec34 PF04136.15 gi|344212920|ref|YP_004797240.1| - 0.066 13.1 0.0 0.37 10.7 0.0 2.1 3 0 0 3 3 3 0 Sec34-like family TonB_N PF16031.5 gi|344212920|ref|YP_004797240.1| - 0.081 13.4 21.8 0.13 12.8 21.8 1.2 1 0 0 1 1 1 0 TonB polyproline region EzrA PF06160.12 gi|344212920|ref|YP_004797240.1| - 0.086 11.0 0.1 0.13 10.4 0.1 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA ZapB PF06005.12 gi|344212920|ref|YP_004797240.1| - 0.12 12.8 1.4 0.26 11.8 1.4 1.4 1 0 0 1 1 1 0 Cell division protein ZapB Dynactin_p22 PF07426.11 gi|344212920|ref|YP_004797240.1| - 0.28 11.0 0.8 0.58 10.0 0.8 1.5 1 0 0 1 1 1 0 Dynactin subunit p22 JIP_LZII PF16471.5 gi|344212920|ref|YP_004797240.1| - 0.38 11.0 3.6 0.67 10.2 3.6 1.4 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II bZIP_1 PF00170.21 gi|344212920|ref|YP_004797240.1| - 0.4 10.8 2.0 2 8.6 2.0 1.9 1 1 0 1 1 1 0 bZIP transcription factor Neisseria_TspB PF05616.13 gi|344212920|ref|YP_004797240.1| - 1.3 7.4 9.5 1.9 6.9 9.5 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein CheD PF03975.13 gi|344212921|ref|YP_004797241.1| - 4.7e-29 100.7 0.1 6.3e-29 100.3 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|344212922|ref|YP_004797242.1| - 3.2e-22 78.1 0.0 1.8e-10 40.5 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|344212922|ref|YP_004797242.1| - 2.8e-19 69.1 0.6 5.6e-10 39.3 0.1 2.5 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX DUF3334 PF11813.8 gi|344212922|ref|YP_004797242.1| - 0.046 13.4 1.9 0.19 11.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3334) Response_reg PF00072.24 gi|344212923|ref|YP_004797243.1| - 2.5e-27 95.2 0.2 2.8e-27 95.1 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain IMPDH PF00478.25 gi|344212923|ref|YP_004797243.1| - 0.048 12.6 0.3 0.061 12.3 0.3 1.0 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain QRPTase_C PF01729.19 gi|344212923|ref|YP_004797243.1| - 0.087 12.6 2.1 0.72 9.6 2.1 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Caveolin PF01146.17 gi|344212924|ref|YP_004797244.1| - 0.24 11.4 1.5 0.83 9.6 1.5 1.9 1 0 0 1 1 1 0 Caveolin Viral_env_E26 PF11050.8 gi|344212926|ref|YP_004797246.1| - 0.19 11.1 0.0 0.26 10.6 0.0 1.1 1 0 0 1 1 1 0 Virus envelope protein E26 Arch_flagellin PF01917.16 gi|344212927|ref|YP_004797247.1| - 7.3e-40 136.8 8.6 8.4e-40 136.6 8.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|344212928|ref|YP_004797248.1| - 1.9e-40 138.7 8.1 2.2e-40 138.5 8.1 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF202 PF02656.15 gi|344212929|ref|YP_004797249.1| - 4 8.0 9.6 2.8 8.5 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) HTH_20 PF12840.7 gi|344212930|ref|YP_004797250.1| - 9.3e-11 41.6 0.0 1.9e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344212930|ref|YP_004797250.1| - 8.9e-06 25.2 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344212930|ref|YP_004797250.1| - 3.1e-05 23.7 0.0 5.5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|344212930|ref|YP_004797250.1| - 8e-05 22.5 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|344212930|ref|YP_004797250.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344212930|ref|YP_004797250.1| - 0.0027 17.7 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344212930|ref|YP_004797250.1| - 0.0067 16.2 0.0 0.016 15.0 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|344212930|ref|YP_004797250.1| - 0.0068 16.3 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|344212930|ref|YP_004797250.1| - 0.018 15.1 0.1 0.037 14.1 0.0 1.5 2 0 0 2 2 2 0 HemN C-terminal domain DUF99 PF01949.16 gi|344212930|ref|YP_004797250.1| - 0.099 12.0 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF99 RDV-p3 PF09231.10 gi|344212930|ref|YP_004797250.1| - 0.099 10.3 0.1 0.1 10.3 0.1 1.0 1 0 0 1 1 1 0 Rice dwarf virus p3 ATPase PF06745.13 gi|344212931|ref|YP_004797251.1| - 2.9e-49 167.5 0.0 3.4e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|344212931|ref|YP_004797251.1| - 4.9e-08 32.8 0.0 6.9e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|344212931|ref|YP_004797251.1| - 0.00019 20.8 0.0 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|344212931|ref|YP_004797251.1| - 0.001 18.4 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DUF2075 PF09848.9 gi|344212931|ref|YP_004797251.1| - 0.018 14.3 0.0 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|344212931|ref|YP_004797251.1| - 0.03 14.3 0.1 0.064 13.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|344212931|ref|YP_004797251.1| - 0.035 13.8 0.1 0.078 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|344212931|ref|YP_004797251.1| - 0.12 12.7 0.0 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|344212931|ref|YP_004797251.1| - 0.13 12.5 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain CheW PF01584.19 gi|344212932|ref|YP_004797252.1| - 2.3e-27 95.3 0.6 2.6e-27 95.1 0.6 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 gi|344212933|ref|YP_004797253.1| - 2.5e-55 186.8 0.0 5.2e-55 185.8 0.0 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|344212933|ref|YP_004797253.1| - 7e-22 77.7 0.3 4.2e-21 75.2 0.1 2.2 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|344212934|ref|YP_004797254.1| - 2.2e-19 70.0 0.1 5.1e-19 68.8 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|344212934|ref|YP_004797254.1| - 2.6e-19 69.2 0.5 5.9e-19 68.1 0.5 1.6 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|344212934|ref|YP_004797254.1| - 7.8e-19 67.7 2.3 1.6e-18 66.7 0.9 2.4 2 1 0 2 2 2 1 Hpt domain P2 PF07194.11 gi|344212934|ref|YP_004797254.1| - 1.7e-08 34.4 0.0 1.7e-08 34.4 0.0 2.3 3 0 0 3 3 3 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|344212934|ref|YP_004797254.1| - 0.00021 21.6 4.5 0.00026 21.3 2.6 2.3 2 0 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_5 PF14501.6 gi|344212934|ref|YP_004797254.1| - 0.01 15.8 0.0 0.06 13.3 0.0 2.2 2 1 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|344212934|ref|YP_004797254.1| - 0.038 13.9 0.2 0.038 13.9 0.2 2.2 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain CheR PF01739.18 gi|344212935|ref|YP_004797255.1| - 1.9e-47 161.3 0.0 2.3e-47 161.0 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|344212935|ref|YP_004797255.1| - 1.1e-07 31.4 2.1 1.1e-07 31.4 2.1 2.3 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|344212935|ref|YP_004797255.1| - 8.6e-05 23.2 0.0 0.0027 18.4 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212935|ref|YP_004797255.1| - 0.00064 19.6 0.0 0.0019 18.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344212935|ref|YP_004797255.1| - 0.00089 19.9 0.0 0.043 14.5 0.0 2.4 1 1 0 1 1 1 1 Methyltransferase domain APAF1_C PF17908.1 gi|344212935|ref|YP_004797255.1| - 0.032 14.2 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 APAF-1 helical domain Methyltransf_11 PF08241.12 gi|344212935|ref|YP_004797255.1| - 0.055 14.1 0.0 0.28 11.8 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Ubiquitin_3 PF14836.6 gi|344212935|ref|YP_004797255.1| - 0.12 12.4 0.0 0.44 10.6 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin-like domain HEAT_2 PF13646.6 gi|344212936|ref|YP_004797256.1| - 1.2e-85 282.0 51.5 8.6e-19 67.7 2.5 6.0 1 1 7 8 8 8 8 HEAT repeats HEAT PF02985.22 gi|344212936|ref|YP_004797256.1| - 6.1e-31 103.8 4.4 0.0012 18.9 0.1 11.1 10 1 1 11 11 11 6 HEAT repeat HEAT_PBS PF03130.16 gi|344212936|ref|YP_004797256.1| - 1.4e-22 78.0 12.4 9.6e-05 22.7 0.4 10.1 10 0 0 10 10 10 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.6 gi|344212936|ref|YP_004797256.1| - 2.7e-22 78.8 17.3 0.02 15.4 0.0 9.7 9 2 1 10 10 10 6 HEAT-like repeat Arm PF00514.23 gi|344212936|ref|YP_004797256.1| - 3.4e-15 55.5 0.9 0.02 14.9 0.0 8.7 9 0 0 9 9 9 3 Armadillo/beta-catenin-like repeat Cnd1 PF12717.7 gi|344212936|ref|YP_004797256.1| - 3.7e-14 53.1 5.5 0.0048 16.9 0.1 6.0 2 1 4 6 6 6 3 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|344212936|ref|YP_004797256.1| - 2.6e-10 39.5 1.3 0.00071 18.3 0.2 4.7 2 1 3 5 5 5 2 Adaptin N terminal region ERAP1_C PF11838.8 gi|344212936|ref|YP_004797256.1| - 1.9e-06 27.7 2.9 0.02 14.5 0.1 3.2 1 1 1 3 3 3 2 ERAP1-like C-terminal domain Vac14_Fab1_bd PF12755.7 gi|344212936|ref|YP_004797256.1| - 0.00022 21.8 0.3 2.5 8.8 0.0 5.0 2 1 3 5 5 5 1 Vacuolar 14 Fab1-binding region API5 PF05918.11 gi|344212936|ref|YP_004797256.1| - 0.00087 18.2 4.5 0.37 9.6 0.5 3.1 2 1 0 3 3 3 2 Apoptosis inhibitory protein 5 (API5) Vitellogenin_N PF01347.22 gi|344212936|ref|YP_004797256.1| - 0.0012 17.4 0.0 0.17 10.2 0.0 2.9 2 1 1 3 3 3 1 Lipoprotein amino terminal region ThylakoidFormat PF11264.8 gi|344212936|ref|YP_004797256.1| - 0.0073 16.0 0.0 2.4 7.8 0.0 2.7 3 0 0 3 3 3 1 Thylakoid formation protein RTP1_C1 PF10363.9 gi|344212936|ref|YP_004797256.1| - 0.0093 16.1 1.5 1.8 8.8 0.4 4.3 3 2 1 4 4 4 1 Required for nuclear transport of RNA pol II C-terminus 1 Cohesin_HEAT PF12765.7 gi|344212936|ref|YP_004797256.1| - 0.015 15.6 7.5 2.8 8.3 0.1 4.3 3 1 1 4 4 4 0 HEAT repeat associated with sister chromatid cohesion DUF2019 PF09450.10 gi|344212936|ref|YP_004797256.1| - 0.026 14.4 1.3 0.78 9.7 0.1 3.5 3 1 1 4 4 4 0 Domain of unknown function (DUF2019) Dopey_N PF04118.14 gi|344212936|ref|YP_004797256.1| - 0.079 12.1 0.0 0.19 10.8 0.0 1.6 1 0 0 1 1 1 0 Dopey, N-terminal CLASP_N PF12348.8 gi|344212936|ref|YP_004797256.1| - 0.09 12.3 0.9 1.3 8.6 0.0 3.1 2 1 0 3 3 3 0 CLASP N terminal GlutR_dimer PF00745.20 gi|344212936|ref|YP_004797256.1| - 0.1 13.0 4.4 4.6 7.7 0.4 3.8 3 1 1 4 4 4 0 Glutamyl-tRNAGlu reductase, dimerisation domain RasGEF_N_2 PF14663.6 gi|344212936|ref|YP_004797256.1| - 0.44 11.0 3.8 1.2e+02 3.1 0.0 4.7 3 1 1 5 5 5 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain CheF-arch PF04283.12 gi|344212937|ref|YP_004797257.1| - 1.8e-69 233.8 0.4 2.3e-69 233.5 0.4 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_2 PF03703.14 gi|344212937|ref|YP_004797257.1| - 0.022 15.0 0.0 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial PH domain Ribosomal_S6e PF01092.19 gi|344212938|ref|YP_004797258.1| - 1.2e-40 138.3 0.1 1.4e-40 138.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e CheF-arch PF04283.12 gi|344212940|ref|YP_004797260.1| - 6.8e-70 235.2 0.3 1.6e-69 234.0 0.1 1.6 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea TrmB PF01978.19 gi|344212940|ref|YP_004797260.1| - 0.0007 19.4 0.0 0.0012 18.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3553 PF12073.8 gi|344212940|ref|YP_004797260.1| - 0.044 13.5 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3553) MarR_2 PF12802.7 gi|344212940|ref|YP_004797260.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 MarR family DHH PF01368.20 gi|344212944|ref|YP_004797264.1| - 0.0023 18.1 0.1 0.005 17.1 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|344212944|ref|YP_004797264.1| - 0.0079 16.6 0.1 0.019 15.4 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain DUF3364 PF11844.8 gi|344212944|ref|YP_004797264.1| - 0.069 13.4 2.4 0.33 11.2 0.7 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3364) DUF2795 PF11387.8 gi|344212944|ref|YP_004797264.1| - 0.21 11.8 4.9 3.5 7.9 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2795) ETF PF01012.21 gi|344212944|ref|YP_004797264.1| - 0.23 11.4 2.4 0.23 11.3 0.6 1.8 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Usp PF00582.26 gi|344212945|ref|YP_004797265.1| - 6.1e-36 124.0 2.5 7e-36 123.8 2.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|344212945|ref|YP_004797265.1| - 0.0082 16.2 0.1 0.016 15.3 0.1 1.4 1 1 0 1 1 1 1 DNA photolyase GGDEF_2 PF17853.1 gi|344212945|ref|YP_004797265.1| - 0.021 15.1 1.0 0.036 14.3 1.0 1.5 1 1 0 1 1 1 0 GGDEF-like domain DUF1778 PF08681.11 gi|344212945|ref|YP_004797265.1| - 0.081 12.9 0.3 0.19 11.6 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) Usp PF00582.26 gi|344212946|ref|YP_004797266.1| - 7e-19 68.7 1.8 1e-18 68.2 1.8 1.2 1 0 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.25 gi|344212947|ref|YP_004797267.1| - 1.9e-19 70.0 0.0 2.5e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|344212947|ref|YP_004797267.1| - 8.9e-14 51.5 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|344212947|ref|YP_004797267.1| - 8.7e-13 48.5 0.0 1.3e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|344212947|ref|YP_004797267.1| - 3e-09 37.7 0.0 3.6e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|344212947|ref|YP_004797267.1| - 8.4e-07 28.9 0.0 1.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|344212947|ref|YP_004797267.1| - 0.0038 17.4 0.0 0.0048 17.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|344212947|ref|YP_004797267.1| - 0.0076 16.3 0.0 0.71 10.0 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|344212947|ref|YP_004797267.1| - 0.013 15.7 0.0 0.016 15.3 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344212947|ref|YP_004797267.1| - 0.041 14.0 0.1 0.067 13.3 0.1 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|344212947|ref|YP_004797267.1| - 0.046 13.3 0.0 0.063 12.8 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase PUA_3 PF17785.1 gi|344212947|ref|YP_004797267.1| - 0.084 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 PUA-like domain Usp PF00582.26 gi|344212948|ref|YP_004797268.1| - 2.9e-13 50.5 0.0 2.3e-11 44.4 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family Plasmid_RAQPRD PF09686.10 gi|344212948|ref|YP_004797268.1| - 0.033 14.4 0.1 0.093 13.0 0.1 1.7 1 1 0 1 1 1 0 Plasmid protein of unknown function (Plasmid_RAQPRD) DAGK_cat PF00781.24 gi|344212948|ref|YP_004797268.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain HalX PF08663.10 gi|344212948|ref|YP_004797268.1| - 0.83 10.0 3.7 2.8 8.3 0.6 2.6 2 1 1 3 3 3 0 HalX domain DUF4203 PF13886.6 gi|344212950|ref|YP_004797270.1| - 0.094 12.4 11.0 0.14 11.8 11.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) SLATT_3 PF18184.1 gi|344212950|ref|YP_004797270.1| - 6.2 7.0 5.6 2.9 8.0 0.1 2.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 ABC_tran PF00005.27 gi|344212952|ref|YP_004797272.1| - 1.9e-57 193.6 0.0 7.5e-32 110.7 0.0 3.4 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|344212952|ref|YP_004797272.1| - 3.7e-37 126.6 0.8 1.8e-19 70.0 0.1 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|344212952|ref|YP_004797272.1| - 4.7e-12 46.3 0.5 1.5e-05 25.0 0.0 4.0 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|344212952|ref|YP_004797272.1| - 2.6e-06 27.9 0.0 0.025 15.0 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|344212952|ref|YP_004797272.1| - 1.9e-05 24.9 0.6 0.028 14.7 0.0 3.4 3 1 0 3 3 3 1 AAA domain SMC_N PF02463.19 gi|344212952|ref|YP_004797272.1| - 4.9e-05 22.9 0.1 0.3 10.5 0.0 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344212952|ref|YP_004797272.1| - 0.00027 20.6 1.4 0.67 9.7 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AIG1 PF04548.16 gi|344212952|ref|YP_004797272.1| - 0.0008 18.8 2.3 0.39 10.0 0.2 3.3 3 0 0 3 3 3 1 AIG1 family AAA_7 PF12775.7 gi|344212952|ref|YP_004797272.1| - 0.0013 18.3 0.2 0.51 9.8 0.0 2.2 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_25 PF13481.6 gi|344212952|ref|YP_004797272.1| - 0.0031 17.1 1.8 2.9 7.4 0.2 4.2 4 1 0 4 4 4 1 AAA domain ATP-synt_ab PF00006.25 gi|344212952|ref|YP_004797272.1| - 0.0043 16.7 0.0 0.31 10.7 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|344212952|ref|YP_004797272.1| - 0.012 15.7 0.2 0.81 9.7 0.0 2.8 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|344212952|ref|YP_004797272.1| - 0.016 15.7 0.0 1.3 9.4 0.0 3.6 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|344212952|ref|YP_004797272.1| - 0.033 14.1 0.3 5 7.0 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase PRK PF00485.18 gi|344212952|ref|YP_004797272.1| - 0.036 13.8 0.3 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Sigma54_activat PF00158.26 gi|344212952|ref|YP_004797272.1| - 0.064 13.0 0.2 17 5.1 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_24 PF13479.6 gi|344212952|ref|YP_004797272.1| - 0.073 12.8 0.0 12 5.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|344212952|ref|YP_004797272.1| - 0.17 12.3 0.2 8.5 6.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase Hpr_kinase_C PF07475.12 gi|344212952|ref|YP_004797272.1| - 0.2 11.2 2.1 2.8 7.4 0.1 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain ATPase PF06745.13 gi|344212952|ref|YP_004797272.1| - 0.27 10.6 0.7 20 4.4 0.0 2.4 2 0 0 2 2 2 0 KaiC DUF87 PF01935.17 gi|344212952|ref|YP_004797272.1| - 0.3 11.1 1.2 8.2 6.4 0.1 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|344212952|ref|YP_004797272.1| - 0.37 9.9 0.9 16 4.6 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain SBP_bac_5 PF00496.22 gi|344212953|ref|YP_004797273.1| - 1.3e-78 264.6 4.0 1.8e-78 264.2 4.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|344212953|ref|YP_004797273.1| - 1.9e-05 24.3 6.4 3.6e-05 23.4 6.4 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SOXp PF12336.8 gi|344212953|ref|YP_004797273.1| - 0.15 13.2 0.1 0.54 11.4 0.1 1.9 1 0 0 1 1 1 0 SOX transcription factor BPD_transp_1 PF00528.22 gi|344212954|ref|YP_004797274.1| - 1.5e-38 132.4 12.8 1.5e-38 132.4 12.8 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344212955|ref|YP_004797275.1| - 2.8e-34 118.5 7.7 2.8e-34 118.5 7.7 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|344212955|ref|YP_004797275.1| - 7.8e-05 22.6 0.1 7.8e-05 22.6 0.1 3.0 3 1 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C CbtB PF09489.10 gi|344212956|ref|YP_004797276.1| - 0.93 9.7 3.4 0.93 9.6 0.2 2.3 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) Amidohydro_1 PF01979.20 gi|344212957|ref|YP_004797277.1| - 1.5e-26 93.6 0.1 3.3e-26 92.4 0.1 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344212957|ref|YP_004797277.1| - 3.1e-15 56.6 6.9 3.3e-07 30.1 3.6 3.1 1 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|344212957|ref|YP_004797277.1| - 0.00044 19.7 0.5 0.014 14.8 0.1 2.8 1 1 1 2 2 2 1 TatD related DNase Usp PF00582.26 gi|344212957|ref|YP_004797277.1| - 0.032 14.8 0.3 0.032 14.8 0.3 2.3 3 0 0 3 3 3 0 Universal stress protein family DHOase PF12890.7 gi|344212957|ref|YP_004797277.1| - 0.044 13.7 0.0 0.17 11.8 0.0 1.9 1 1 0 1 1 1 0 Dihydro-orotase-like BPL_LplA_LipB PF03099.19 gi|344212958|ref|YP_004797278.1| - 0.0018 18.2 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.22 gi|344212959|ref|YP_004797279.1| - 0.0093 16.2 0.0 0.031 14.5 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M23 Isochorismatase PF00857.20 gi|344212960|ref|YP_004797280.1| - 1.4e-49 168.7 0.0 1.5e-49 168.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M78 PF06114.13 gi|344212961|ref|YP_004797281.1| - 0.028 14.3 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain Peptidase_M76 PF09768.9 gi|344212961|ref|YP_004797281.1| - 0.23 11.2 0.0 0.34 10.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_M78 PF06114.13 gi|344212962|ref|YP_004797282.1| - 0.0082 16.1 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 IrrE N-terminal-like domain QRPTase_C PF01729.19 gi|344212963|ref|YP_004797283.1| - 1.5e-16 60.6 0.0 2.1e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|344212963|ref|YP_004797283.1| - 0.00017 21.6 0.0 0.0005 20.1 0.0 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Virulence_fact PF13769.6 gi|344212963|ref|YP_004797283.1| - 0.17 12.2 0.1 0.45 10.8 0.1 1.7 1 0 0 1 1 1 0 Virulence factor NAPRTase_N PF17767.1 gi|344212963|ref|YP_004797283.1| - 0.17 12.3 0.0 0.72 10.2 0.0 1.8 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Cys_rich_CPCC PF14206.6 gi|344212965|ref|YP_004797285.1| - 1.1e-27 95.7 1.0 1.3e-27 95.5 1.0 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC Zip PF02535.22 gi|344212966|ref|YP_004797286.1| - 5.7e-17 61.9 12.8 4.5e-12 45.8 6.4 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter YhhN PF07947.14 gi|344212966|ref|YP_004797286.1| - 0.35 10.5 6.1 0.17 11.5 0.5 2.6 2 1 0 3 3 3 0 YhhN family GtrA PF04138.14 gi|344212966|ref|YP_004797286.1| - 0.35 11.1 0.0 0.35 11.1 0.0 2.4 3 1 0 3 3 3 0 GtrA-like protein Peptidase_M50 PF02163.22 gi|344212967|ref|YP_004797287.1| - 4.8e-16 58.8 5.6 3.2e-08 33.2 0.2 2.8 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|344212967|ref|YP_004797287.1| - 1e-05 25.3 13.0 1e-05 25.3 13.0 2.3 1 1 0 1 1 1 1 Peptidase M50B-like CBS PF00571.28 gi|344212967|ref|YP_004797287.1| - 0.0023 18.3 1.4 0.016 15.6 0.3 2.3 2 0 0 2 2 2 1 CBS domain Lactamase_B_3 PF13483.6 gi|344212968|ref|YP_004797288.1| - 1.5e-25 90.0 0.0 1.9e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|344212968|ref|YP_004797288.1| - 0.0074 15.8 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain IF-2B PF01008.17 gi|344212969|ref|YP_004797289.1| - 5.4e-46 157.1 0.3 6.6e-46 156.8 0.3 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|344212969|ref|YP_004797289.1| - 2.3e-11 43.9 0.3 4.7e-11 42.8 0.2 1.6 1 1 0 1 1 1 1 NUDIX domain Aminotran_5 PF00266.19 gi|344212970|ref|YP_004797290.1| - 1.5e-55 188.7 0.0 1.9e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|344212970|ref|YP_004797290.1| - 1.7e-06 27.5 0.0 0.00061 19.1 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II DUF4091 PF13320.6 gi|344212970|ref|YP_004797290.1| - 0.078 13.1 0.1 0.27 11.4 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4091) Cys_Met_Meta_PP PF01053.20 gi|344212970|ref|YP_004797290.1| - 0.2 10.1 0.0 0.27 9.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Optomotor-blind PF11078.8 gi|344212970|ref|YP_004797290.1| - 0.31 11.6 2.4 19 5.9 0.0 3.5 3 1 0 3 3 3 0 Optomotor-blind protein N-terminal region Relaxase PF03432.14 gi|344212971|ref|YP_004797291.1| - 0.058 13.0 0.1 0.085 12.4 0.1 1.3 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain SCAB-ABD PF16711.5 gi|344212971|ref|YP_004797291.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein DUF2525 PF10733.9 gi|344212971|ref|YP_004797291.1| - 0.6 10.4 3.3 84 3.6 0.0 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2525) Spc7 PF08317.11 gi|344212972|ref|YP_004797292.1| - 1e-06 27.9 69.6 0.00071 18.5 12.1 4.7 2 2 2 4 4 4 4 Spc7 kinetochore protein SHE3 PF17078.5 gi|344212972|ref|YP_004797292.1| - 1.2e-05 25.2 48.2 2.9e-05 23.9 21.8 2.4 2 0 0 2 2 2 1 SWI5-dependent HO expression protein 3 Seryl_tRNA_N PF02403.22 gi|344212972|ref|YP_004797292.1| - 1.3e-05 25.4 59.3 0.00016 21.8 6.3 5.2 2 2 3 5 5 5 3 Seryl-tRNA synthetase N-terminal domain DUF5082 PF16888.5 gi|344212972|ref|YP_004797292.1| - 0.00036 20.8 53.4 0.017 15.4 13.7 7.2 2 2 4 6 6 6 3 Domain of unknown function (DUF5082) DUF4407 PF14362.6 gi|344212972|ref|YP_004797292.1| - 0.0022 17.4 42.8 0.059 12.7 6.5 3.3 1 1 2 3 3 3 2 Domain of unknown function (DUF4407) Golgin_A5 PF09787.9 gi|344212972|ref|YP_004797292.1| - 0.0028 17.2 78.3 0.021 14.3 7.4 4.1 1 1 1 3 3 3 2 Golgin subfamily A member 5 Laminin_II PF06009.12 gi|344212972|ref|YP_004797292.1| - 0.004 17.2 35.9 0.0067 16.5 9.6 4.8 3 2 2 5 5 5 2 Laminin Domain II Uso1_p115_C PF04871.13 gi|344212972|ref|YP_004797292.1| - 0.0095 16.3 15.6 0.0095 16.3 15.6 5.3 3 2 2 5 5 3 1 Uso1 / p115 like vesicle tethering protein, C terminal region BRE1 PF08647.11 gi|344212972|ref|YP_004797292.1| - 0.0097 16.0 11.8 0.0097 16.0 11.8 5.9 5 1 1 6 6 6 1 BRE1 E3 ubiquitin ligase GAS PF13851.6 gi|344212972|ref|YP_004797292.1| - 0.012 15.0 62.9 0.062 12.7 23.4 4.4 2 2 2 4 4 4 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.9 gi|344212972|ref|YP_004797292.1| - 0.022 13.9 55.1 0.86 8.6 10.7 4.4 2 2 2 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 DivIC PF04977.15 gi|344212972|ref|YP_004797292.1| - 0.023 14.5 0.9 0.023 14.5 0.9 8.7 4 2 5 9 9 8 0 Septum formation initiator DUF3584 PF12128.8 gi|344212972|ref|YP_004797292.1| - 0.031 11.8 60.4 0.16 9.4 24.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) FlaC_arch PF05377.11 gi|344212972|ref|YP_004797292.1| - 0.031 14.7 1.6 0.031 14.7 1.6 8.7 6 3 2 8 8 5 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.12 gi|344212972|ref|YP_004797292.1| - 0.04 14.4 38.2 0.13 12.7 0.9 7.0 3 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein ATG16 PF08614.11 gi|344212972|ref|YP_004797292.1| - 0.065 13.4 73.5 0.046 13.9 13.8 5.0 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) AAA_23 PF13476.6 gi|344212972|ref|YP_004797292.1| - 0.066 13.7 66.3 8.9e+02 0.2 15.2 4.6 1 1 1 2 2 1 0 AAA domain Med9 PF07544.13 gi|344212972|ref|YP_004797292.1| - 0.071 13.2 54.2 0.32 11.1 5.2 5.7 2 2 2 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 DUF1664 PF07889.12 gi|344212972|ref|YP_004797292.1| - 0.14 12.2 43.1 0.43 10.6 2.4 5.6 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|344212972|ref|YP_004797292.1| - 0.15 12.1 23.5 2.1 8.4 0.9 4.9 3 2 2 5 5 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Tropomyosin_1 PF12718.7 gi|344212972|ref|YP_004797292.1| - 0.21 11.7 90.4 0.066 13.4 23.8 5.1 2 2 3 5 5 5 0 Tropomyosin like TPR_MLP1_2 PF07926.12 gi|344212972|ref|YP_004797292.1| - 0.3 11.1 66.6 0.59 10.2 17.8 5.7 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein HemX PF04375.14 gi|344212972|ref|YP_004797292.1| - 0.46 9.7 40.5 2.1 7.5 6.5 4.3 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase CEP63 PF17045.5 gi|344212972|ref|YP_004797292.1| - 0.47 10.3 52.4 0.29 11.0 20.9 2.4 2 0 0 2 2 2 0 Centrosomal protein of 63 kDa DUF3450 PF11932.8 gi|344212972|ref|YP_004797292.1| - 0.54 9.5 59.1 0.087 12.1 5.4 5.7 3 2 4 7 7 6 0 Protein of unknown function (DUF3450) Fib_alpha PF08702.10 gi|344212972|ref|YP_004797292.1| - 0.62 10.3 45.8 0.35 11.1 11.4 4.6 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|344212972|ref|YP_004797292.1| - 0.97 9.9 61.2 4.8 7.6 26.2 3.6 1 1 2 3 3 3 0 Fez1 APG6_N PF17675.1 gi|344212972|ref|YP_004797292.1| - 1.1 9.8 89.7 1.7 9.1 20.7 6.1 1 1 2 4 4 4 0 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|344212972|ref|YP_004797292.1| - 1.1 9.3 79.8 1.5 8.8 16.3 5.4 1 1 5 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.19 gi|344212972|ref|YP_004797292.1| - 1.3 8.8 66.4 2.8 7.7 31.0 2.9 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Spectrin PF00435.21 gi|344212972|ref|YP_004797292.1| - 1.6 9.2 56.1 10 6.7 4.5 6.1 2 2 2 5 5 5 0 Spectrin repeat FAM76 PF16046.5 gi|344212972|ref|YP_004797292.1| - 1.7 7.9 31.4 1.2 8.4 6.8 2.6 2 1 0 2 2 2 0 FAM76 protein Lectin_N PF03954.14 gi|344212972|ref|YP_004797292.1| - 1.8 8.3 22.0 0.12 12.1 0.6 4.7 2 2 3 5 5 5 0 Hepatic lectin, N-terminal domain DASH_Dam1 PF08653.10 gi|344212972|ref|YP_004797292.1| - 1.8 8.4 22.8 31 4.4 0.1 7.3 5 1 2 7 7 7 0 DASH complex subunit Dam1 KASH_CCD PF14662.6 gi|344212972|ref|YP_004797292.1| - 2 8.2 65.3 0.35 10.7 14.3 3.9 2 2 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH DUF4200 PF13863.6 gi|344212972|ref|YP_004797292.1| - 2.2 8.7 66.0 0.15 12.5 14.2 6.0 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) FapA PF03961.13 gi|344212972|ref|YP_004797292.1| - 2.5 6.6 49.2 1.8 7.1 4.9 4.2 1 1 3 4 4 4 0 Flagellar Assembly Protein A HMMR_N PF15905.5 gi|344212972|ref|YP_004797292.1| - 2.5 7.5 68.8 1.2 8.5 29.0 3.0 2 2 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal IFT57 PF10498.9 gi|344212972|ref|YP_004797292.1| - 2.6 6.9 47.0 0.19 10.6 18.6 3.3 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 MAD PF05557.13 gi|344212972|ref|YP_004797292.1| - 2.8 6.2 65.5 0.15 10.4 29.1 2.3 1 1 1 2 2 2 0 Mitotic checkpoint protein OmpH PF03938.14 gi|344212972|ref|YP_004797292.1| - 3.3 8.1 53.7 7.7 6.8 11.6 4.4 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) Phage_GP20 PF06810.11 gi|344212972|ref|YP_004797292.1| - 4 7.2 55.0 2.2 8.1 4.5 6.2 2 2 3 6 6 6 0 Phage minor structural protein GP20 Fmp27_WPPW PF10359.9 gi|344212972|ref|YP_004797292.1| - 4.3 6.1 52.2 0.19 10.6 10.1 4.1 1 1 2 3 3 2 0 RNA pol II promoter Fmp27 protein domain Filament PF00038.21 gi|344212972|ref|YP_004797292.1| - 6.1 6.3 70.1 0.17 11.4 25.1 4.9 1 1 3 5 5 5 0 Intermediate filament protein FlxA PF14282.6 gi|344212972|ref|YP_004797292.1| - 6.4 6.8 48.6 0.21 11.6 5.4 5.2 2 2 2 5 5 5 0 FlxA-like protein Occludin_ELL PF07303.13 gi|344212972|ref|YP_004797292.1| - 6.8 7.5 31.5 9.1 7.1 0.2 4.8 2 2 1 4 4 4 0 Occludin homology domain DUF4201 PF13870.6 gi|344212972|ref|YP_004797292.1| - 7.8 6.2 55.5 1.1 8.9 22.0 4.2 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) DUF724 PF05266.14 gi|344212972|ref|YP_004797292.1| - 8.5 6.2 54.6 0.76 9.6 15.7 4.5 2 2 2 4 4 4 0 Protein of unknown function (DUF724) CRCB PF02537.15 gi|344212974|ref|YP_004797294.1| - 1.1e-16 60.9 12.2 1.9e-16 60.2 12.2 1.3 1 1 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|344212975|ref|YP_004797295.1| - 1.7e-21 76.3 12.5 1.9e-21 76.1 12.5 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF853 PF05872.12 gi|344212976|ref|YP_004797296.1| - 5.8e-07 28.5 0.6 0.00087 18.0 0.1 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|344212976|ref|YP_004797296.1| - 2.2e-06 28.0 0.0 3.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|344212976|ref|YP_004797296.1| - 2.4e-05 23.4 0.0 0.024 13.6 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|344212976|ref|YP_004797296.1| - 0.0021 17.4 0.0 0.37 10.1 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|344212976|ref|YP_004797296.1| - 0.015 15.6 0.0 0.96 9.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|344212976|ref|YP_004797296.1| - 0.018 14.7 2.3 0.22 11.2 2.3 2.3 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|344212976|ref|YP_004797296.1| - 0.024 13.9 0.1 0.056 12.7 0.1 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_16 PF13191.6 gi|344212976|ref|YP_004797296.1| - 0.029 14.8 0.2 0.064 13.6 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|344212976|ref|YP_004797296.1| - 0.05 13.9 0.0 0.22 11.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|344212976|ref|YP_004797296.1| - 0.099 12.7 0.0 3.4 7.7 0.0 2.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|344212976|ref|YP_004797296.1| - 0.14 12.2 0.0 3.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KH_4 PF13083.6 gi|344212976|ref|YP_004797296.1| - 0.4 10.6 1.2 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 KH domain Big_1 PF02369.16 gi|344212977|ref|YP_004797297.1| - 1.3e-05 25.1 8.9 4.4e-05 23.4 8.3 2.0 1 1 1 2 2 2 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.6 gi|344212977|ref|YP_004797297.1| - 0.00012 22.3 5.3 0.00025 21.3 5.1 1.7 1 1 0 1 1 1 1 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|344212977|ref|YP_004797297.1| - 0.002 18.2 0.5 0.006 16.7 0.5 1.8 1 1 0 1 1 1 1 Macroglobulin domain MG4 Invasin_D3 PF09134.10 gi|344212977|ref|YP_004797297.1| - 0.0026 18.0 5.6 0.0046 17.2 5.5 1.6 1 1 0 1 1 1 1 Invasin, domain 3 YtkA PF13115.6 gi|344212977|ref|YP_004797297.1| - 0.013 16.1 2.4 0.052 14.1 2.4 1.9 1 1 1 2 2 2 0 YtkA-like PCMT PF01135.19 gi|344212978|ref|YP_004797298.1| - 2.6e-37 128.6 0.0 3.3e-37 128.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|344212978|ref|YP_004797298.1| - 3e-08 33.6 0.0 4e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344212978|ref|YP_004797298.1| - 6e-07 30.1 0.0 1.6e-06 28.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344212978|ref|YP_004797298.1| - 4.7e-06 26.3 0.1 1.2e-05 24.9 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|344212978|ref|YP_004797298.1| - 0.0005 20.8 0.0 0.00091 19.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344212978|ref|YP_004797298.1| - 0.0073 16.9 0.0 0.017 15.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|344212978|ref|YP_004797298.1| - 0.0082 15.2 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|344212978|ref|YP_004797298.1| - 0.017 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|344212978|ref|YP_004797298.1| - 0.021 14.4 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|344212978|ref|YP_004797298.1| - 0.028 13.8 0.2 0.091 12.1 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) DUF5042 PF16445.5 gi|344212978|ref|YP_004797298.1| - 0.06 11.7 0.0 0.086 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5042) Methyltransf_18 PF12847.7 gi|344212978|ref|YP_004797298.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|344212978|ref|YP_004797298.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|344212978|ref|YP_004797298.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|344212979|ref|YP_004797299.1| - 3.6e-61 206.6 0.0 4e-61 206.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|344212979|ref|YP_004797299.1| - 4.8e-06 26.4 0.0 6.1e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|344212979|ref|YP_004797299.1| - 3.8e-05 24.3 0.0 6.8e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344212979|ref|YP_004797299.1| - 0.00032 20.5 0.0 0.00043 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344212979|ref|YP_004797299.1| - 0.0029 17.2 0.0 0.0042 16.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|344212979|ref|YP_004797299.1| - 0.0033 16.5 0.0 0.0063 15.6 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|344212979|ref|YP_004797299.1| - 0.011 15.1 0.0 0.015 14.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.12 gi|344212979|ref|YP_004797299.1| - 0.033 13.9 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Fibrillarin PF01269.17 gi|344212979|ref|YP_004797299.1| - 0.1 11.7 0.1 0.22 10.6 0.0 1.5 2 0 0 2 2 2 0 Fibrillarin Methyltransf_32 PF13679.6 gi|344212979|ref|YP_004797299.1| - 0.19 11.7 0.0 0.25 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF4265 PF14085.6 gi|344212980|ref|YP_004797300.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4265) zinc_ribbon_5 PF13719.6 gi|344212980|ref|YP_004797300.1| - 0.13 12.1 0.2 0.23 11.3 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|344212980|ref|YP_004797300.1| - 0.14 12.1 2.8 1.1 9.3 3.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF1648 PF07853.11 gi|344212981|ref|YP_004797301.1| - 6.4e-18 64.1 0.6 6.4e-18 64.1 0.6 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1648) DUF3995 PF13160.6 gi|344212981|ref|YP_004797301.1| - 4.8 7.6 12.0 0.24 11.7 4.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) Peptidase_M29 PF02073.15 gi|344212982|ref|YP_004797302.1| - 5.8e-13 48.4 0.0 4.9e-10 38.7 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.20 gi|344212983|ref|YP_004797303.1| - 1.6e-20 73.3 0.0 3.3e-20 72.3 0.0 1.6 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|344212983|ref|YP_004797303.1| - 4e-08 33.4 0.1 7.4e-08 32.6 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|344212983|ref|YP_004797303.1| - 0.00011 22.5 0.0 0.00035 20.9 0.0 1.9 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344212983|ref|YP_004797303.1| - 0.0035 16.7 0.3 0.041 13.2 0.3 2.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|344212983|ref|YP_004797303.1| - 0.0039 17.8 0.0 0.021 15.5 0.0 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Metallophos_2 PF12850.7 gi|344212984|ref|YP_004797304.1| - 4.9e-34 117.9 0.1 5.5e-34 117.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344212984|ref|YP_004797304.1| - 4e-06 27.5 5.5 7e-05 23.4 0.3 2.5 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF5603 PF18231.1 gi|344212984|ref|YP_004797304.1| - 0.092 13.1 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5603) UvrD-helicase PF00580.21 gi|344212986|ref|YP_004797306.1| - 3e-25 89.4 0.0 1.4e-11 44.5 0.0 2.5 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|344212986|ref|YP_004797306.1| - 4.2e-24 85.6 0.0 9.4e-24 84.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain UvrD_C PF13361.6 gi|344212986|ref|YP_004797306.1| - 1.4e-17 64.1 0.1 2.5e-10 40.3 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|344212986|ref|YP_004797306.1| - 5.9e-10 38.8 0.5 0.0014 18.4 0.0 2.9 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|344212986|ref|YP_004797306.1| - 5e-07 29.6 0.0 0.00085 19.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|344212986|ref|YP_004797306.1| - 2.1e-06 27.7 0.0 2.1 8.0 0.0 4.0 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.15 gi|344212986|ref|YP_004797306.1| - 0.0013 16.9 0.0 0.0022 16.2 0.0 1.3 1 0 0 1 1 1 1 Origin of replication binding protein AAA_22 PF13401.6 gi|344212986|ref|YP_004797306.1| - 0.0026 18.0 0.0 0.34 11.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|344212986|ref|YP_004797306.1| - 0.01 15.4 3.1 0.38 10.3 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.6 gi|344212986|ref|YP_004797306.1| - 0.044 13.6 0.0 0.22 11.3 0.0 2.1 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.9 gi|344212986|ref|YP_004797306.1| - 0.12 11.6 0.0 1.6 7.9 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_12 PF13087.6 gi|344212986|ref|YP_004797306.1| - 0.13 11.9 0.0 0.46 10.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|344212986|ref|YP_004797306.1| - 0.8 10.1 4.6 3.8 7.9 0.4 3.5 4 1 0 4 4 4 0 AAA domain DUF2269 PF10027.9 gi|344212987|ref|YP_004797307.1| - 0.032 14.3 4.2 0.038 14.0 4.2 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) SafA PF17073.5 gi|344212987|ref|YP_004797307.1| - 0.42 10.6 2.5 1.6 8.8 0.2 2.1 2 0 0 2 2 2 0 Two-component-system connector protein HTH_20 PF12840.7 gi|344212988|ref|YP_004797308.1| - 4.3e-10 39.5 0.5 5.9e-10 39.1 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344212988|ref|YP_004797308.1| - 1.1e-06 28.4 0.1 1.7e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344212988|ref|YP_004797308.1| - 2.5e-05 23.7 0.0 5.1e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344212988|ref|YP_004797308.1| - 6.4e-05 22.7 0.0 0.0001 22.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|344212988|ref|YP_004797308.1| - 0.00019 21.3 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|344212988|ref|YP_004797308.1| - 0.0013 18.6 0.3 0.0029 17.4 0.2 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FUR PF01475.19 gi|344212988|ref|YP_004797308.1| - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_5 PF01022.20 gi|344212988|ref|YP_004797308.1| - 0.0023 17.8 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|344212988|ref|YP_004797308.1| - 0.0023 18.0 0.2 0.0033 17.5 0.2 1.3 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 gi|344212988|ref|YP_004797308.1| - 0.0026 17.6 0.1 0.0048 16.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Plk4_PB1 PF18190.1 gi|344212988|ref|YP_004797308.1| - 0.0038 17.4 0.0 0.0046 17.1 0.0 1.3 1 0 0 1 1 1 1 Polo-like Kinase 4 Polo Box 1 ArsR PF09824.9 gi|344212988|ref|YP_004797308.1| - 0.0043 16.7 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_28 PF13518.6 gi|344212988|ref|YP_004797308.1| - 0.029 14.5 0.0 0.06 13.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|344212988|ref|YP_004797308.1| - 0.038 13.8 0.0 0.094 12.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.15 gi|344212988|ref|YP_004797308.1| - 0.038 14.1 0.0 0.079 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|344212988|ref|YP_004797308.1| - 0.063 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|344212988|ref|YP_004797308.1| - 0.067 12.9 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.6 gi|344212988|ref|YP_004797308.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|344212989|ref|YP_004797309.1| - 7.2e-09 35.5 0.0 1.3e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DZR PF12773.7 gi|344212990|ref|YP_004797310.1| - 0.0061 16.5 0.6 0.0064 16.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344212990|ref|YP_004797310.1| - 0.032 14.0 1.9 0.059 13.1 1.9 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|344212990|ref|YP_004797310.1| - 0.17 11.5 3.0 1.5 8.6 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|344212990|ref|YP_004797310.1| - 0.24 11.5 3.8 0.61 10.3 0.4 2.1 1 1 1 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344212990|ref|YP_004797310.1| - 0.32 11.0 3.5 1.2 9.1 3.5 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|344212990|ref|YP_004797310.1| - 0.35 10.4 8.3 1.4 8.4 0.4 2.5 2 1 1 3 3 3 0 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|344212990|ref|YP_004797310.1| - 2.2 8.1 5.7 15 5.5 0.6 2.3 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO PBP PF01161.20 gi|344212991|ref|YP_004797311.1| - 3.8e-15 56.4 0.0 5.2e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein COX1 PF00115.20 gi|344212992|ref|YP_004797312.1| - 1.4e-56 192.2 55.9 1.4e-56 192.2 55.9 2.1 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|344212992|ref|YP_004797312.1| - 0.0046 17.2 1.0 0.0046 17.2 1.0 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF2871) Hydrolase_4 PF12146.8 gi|344212993|ref|YP_004797313.1| - 2.4e-11 43.3 0.1 5.6e-11 42.2 0.1 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|344212993|ref|YP_004797313.1| - 5.3e-10 39.4 0.0 8.3e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|344212993|ref|YP_004797313.1| - 2.4e-08 33.1 0.0 2.5e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.7 gi|344212993|ref|YP_004797313.1| - 1.9e-06 28.7 0.2 1.9e-06 28.7 0.2 2.2 1 1 1 2 2 2 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|344212993|ref|YP_004797313.1| - 2.4e-06 27.2 0.1 1.1e-05 25.1 0.1 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|344212993|ref|YP_004797313.1| - 2.1e-05 24.2 0.1 3.4e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|344212993|ref|YP_004797313.1| - 0.0034 17.0 0.1 0.0095 15.6 0.0 1.7 2 0 0 2 2 2 1 Putative esterase PAF-AH_p_II PF03403.13 gi|344212993|ref|YP_004797313.1| - 0.028 13.0 0.0 4.4 5.7 0.0 2.1 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II BAAT_C PF08840.11 gi|344212993|ref|YP_004797313.1| - 0.029 14.3 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|344212993|ref|YP_004797313.1| - 0.04 13.5 0.0 1.3 8.5 0.0 2.1 1 1 1 2 2 2 0 Dienelactone hydrolase family tRNA-synt_His PF13393.6 gi|344212994|ref|YP_004797314.1| - 0.088 12.1 0.8 0.16 11.2 0.8 1.4 1 1 0 1 1 1 0 Histidyl-tRNA synthetase Glyoxalase PF00903.25 gi|344212995|ref|YP_004797315.1| - 1e-18 67.8 0.0 7.1e-18 65.0 0.0 2.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|344212995|ref|YP_004797315.1| - 1.3e-05 25.4 0.1 0.0058 16.9 0.0 2.9 3 0 0 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTP_transf_like PF01467.26 gi|344212996|ref|YP_004797316.1| - 8e-08 32.6 0.7 5.7e-07 29.8 0.7 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|344212996|ref|YP_004797316.1| - 0.045 13.6 0.5 0.071 13.0 0.4 1.6 2 0 0 2 2 2 0 FAD synthetase Lipocalin_5 PF13924.6 gi|344212996|ref|YP_004797316.1| - 0.15 11.8 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Lipocalin-like domain ABC_tran PF00005.27 gi|344212997|ref|YP_004797317.1| - 6.3e-29 101.2 0.0 8.6e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344212997|ref|YP_004797317.1| - 2.5e-14 53.8 0.0 3.4e-07 30.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344212997|ref|YP_004797317.1| - 0.00022 20.9 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|344212997|ref|YP_004797317.1| - 0.00023 20.7 0.0 0.36 10.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|344212997|ref|YP_004797317.1| - 0.0021 18.2 0.1 0.017 15.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|344212997|ref|YP_004797317.1| - 0.0023 17.7 0.1 0.16 11.7 0.0 2.5 2 1 1 3 3 3 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|344212997|ref|YP_004797317.1| - 0.0025 17.5 0.0 0.0047 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|344212997|ref|YP_004797317.1| - 0.0033 17.6 0.1 0.0097 16.1 0.1 1.8 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|344212997|ref|YP_004797317.1| - 0.0045 17.4 0.7 0.011 16.2 0.7 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|344212997|ref|YP_004797317.1| - 0.0099 16.4 0.0 0.016 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344212997|ref|YP_004797317.1| - 0.031 14.2 0.1 0.091 12.7 0.0 1.7 2 1 0 2 2 2 0 RsgA GTPase AAA_25 PF13481.6 gi|344212997|ref|YP_004797317.1| - 0.04 13.5 0.7 0.19 11.3 0.5 2.4 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|344212997|ref|YP_004797317.1| - 0.086 13.1 0.2 0.33 11.2 0.0 2.0 1 1 0 2 2 2 0 AAA domain CbiQ PF02361.16 gi|344212998|ref|YP_004797318.1| - 4e-29 101.8 9.6 5.5e-29 101.4 9.6 1.1 1 0 0 1 1 1 1 Cobalt transport protein DsrH PF04077.12 gi|344212998|ref|YP_004797318.1| - 0.052 13.7 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 DsrH like protein PDGLE PF13190.6 gi|344212999|ref|YP_004797319.1| - 5.9e-10 38.9 1.4 9.3e-10 38.3 1.4 1.4 1 1 0 1 1 1 1 PDGLE domain Yip1 PF04893.17 gi|344212999|ref|YP_004797319.1| - 0.0051 16.5 0.9 0.0061 16.3 0.9 1.2 1 0 0 1 1 1 1 Yip1 domain CbiM PF01891.16 gi|344213000|ref|YP_004797320.1| - 6e-64 215.7 19.9 6.7e-64 215.5 19.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|344213000|ref|YP_004797320.1| - 0.91 9.6 19.7 2.2 8.3 19.7 1.7 1 1 0 1 1 1 0 ECF transporter, substrate-specific component NikR_C PF08753.11 gi|344213001|ref|YP_004797321.1| - 1.5e-25 89.2 8.5 1.9e-25 88.8 8.5 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|344213001|ref|YP_004797321.1| - 2.1e-06 27.4 0.1 4.7e-06 26.3 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RNA_GG_bind PF10258.9 gi|344213001|ref|YP_004797321.1| - 0.047 13.7 0.1 0.071 13.2 0.1 1.2 1 0 0 1 1 1 0 PHAX RNA-binding domain tRNA_NucTransf2 PF09249.11 gi|344213002|ref|YP_004797322.1| - 1.9e-42 144.0 0.0 3.3e-42 143.3 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|344213002|ref|YP_004797322.1| - 5.3e-14 52.3 0.0 9.8e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.19 gi|344213003|ref|YP_004797323.1| - 6.5e-81 272.2 0.0 9.3e-81 271.6 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.23 gi|344213004|ref|YP_004797324.1| - 6.2e-22 77.7 0.2 1.7e-12 47.4 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|344213004|ref|YP_004797324.1| - 6e-12 46.1 0.8 1.1e-07 32.2 0.2 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|344213004|ref|YP_004797324.1| - 0.0015 18.6 0.2 0.0041 17.2 0.1 1.7 2 0 0 2 2 2 1 Centromere kinetochore component CENP-T histone fold DUF1931 PF09123.11 gi|344213004|ref|YP_004797324.1| - 0.013 15.6 1.2 0.067 13.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) CENP-S PF15630.6 gi|344213004|ref|YP_004797324.1| - 0.029 14.8 0.5 0.052 13.9 0.5 1.4 1 0 0 1 1 1 0 CENP-S protein tRNA_anti-codon PF01336.25 gi|344213005|ref|YP_004797325.1| - 1e-29 102.3 8.9 2.5e-12 46.6 0.1 4.1 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|344213005|ref|YP_004797325.1| - 2.3e-12 46.7 1.7 5.2e-06 26.3 0.2 3.3 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|344213005|ref|YP_004797325.1| - 1.6e-08 34.5 0.0 0.077 12.7 0.0 3.2 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 tRNA_anti_2 PF13742.6 gi|344213005|ref|YP_004797325.1| - 0.058 13.6 0.1 14 5.9 0.0 3.6 4 0 0 4 4 4 0 OB-fold nucleic acid binding domain DUF4131 PF13567.6 gi|344213005|ref|YP_004797325.1| - 0.059 13.0 0.1 33 4.1 0.0 3.8 4 1 0 4 4 4 0 Domain of unknown function (DUF4131) RMI2 PF16100.5 gi|344213005|ref|YP_004797325.1| - 0.15 11.9 0.1 6.4 6.6 0.1 2.7 2 0 0 2 2 2 0 RecQ-mediated genome instability protein 2 DUF309 PF03745.14 gi|344213007|ref|YP_004797327.1| - 4.5e-18 64.7 2.5 8.2e-18 63.8 2.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF309) DisA_N PF02457.16 gi|344213008|ref|YP_004797328.1| - 5e-09 35.8 0.0 7.5e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Epimerase PF01370.21 gi|344213009|ref|YP_004797329.1| - 7.4e-22 78.0 0.0 1.3e-21 77.2 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344213009|ref|YP_004797329.1| - 3.6e-13 49.2 0.0 6.8e-13 48.3 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|344213009|ref|YP_004797329.1| - 8.3e-11 41.5 0.0 6.4e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|344213009|ref|YP_004797329.1| - 8.9e-11 41.4 0.3 1.4e-07 31.0 0.3 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|344213009|ref|YP_004797329.1| - 1.5e-10 41.0 0.0 8.8e-10 38.5 0.0 2.1 1 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|344213009|ref|YP_004797329.1| - 6.5e-09 35.9 0.0 7.6e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|344213009|ref|YP_004797329.1| - 0.015 14.4 0.1 0.029 13.5 0.1 1.4 1 1 0 1 1 1 0 RmlD substrate binding domain NmrA PF05368.13 gi|344213009|ref|YP_004797329.1| - 0.016 14.7 0.1 0.032 13.8 0.1 1.5 1 1 0 1 1 1 0 NmrA-like family KR PF08659.10 gi|344213009|ref|YP_004797329.1| - 0.074 13.0 0.1 1.4 8.8 0.1 2.2 1 1 0 1 1 1 0 KR domain DHNA PF04038.12 gi|344213010|ref|YP_004797330.1| - 1.7e-39 134.6 0.0 1.9e-39 134.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase SbmA_BacA PF05992.12 gi|344213011|ref|YP_004797331.1| - 0.0059 16.1 5.9 0.0095 15.4 5.9 1.3 1 0 0 1 1 1 1 SbmA/BacA-like family Phe_tRNA-synt_N PF02912.18 gi|344213012|ref|YP_004797332.1| - 0.015 15.2 0.0 0.046 13.7 0.0 1.8 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain Laminin_II PF06009.12 gi|344213012|ref|YP_004797332.1| - 0.044 13.8 0.3 0.25 11.4 0.0 2.0 1 1 1 2 2 2 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|344213012|ref|YP_004797332.1| - 0.094 12.8 0.2 3.2 7.8 0.0 2.2 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3470 PF11953.8 gi|344213012|ref|YP_004797332.1| - 0.44 10.6 5.2 8.8 6.4 0.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3470) DUF4399 PF14347.6 gi|344213013|ref|YP_004797333.1| - 2.4e-38 130.4 9.6 7.5e-24 83.9 1.9 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4399) Phage_holin_2_3 PF16080.5 gi|344213014|ref|YP_004797334.1| - 1.3 8.9 4.5 2 8.3 0.2 2.8 2 1 0 2 2 2 0 Bacteriophage holin family HP1 COX2 PF00116.20 gi|344213015|ref|YP_004797335.1| - 7.6e-19 67.8 0.0 1.5e-18 66.8 0.0 1.5 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|344213015|ref|YP_004797335.1| - 0.00046 20.3 0.0 0.00072 19.6 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX14 PF14880.6 gi|344213015|ref|YP_004797335.1| - 0.0091 15.8 1.1 0.062 13.2 0.9 2.2 2 0 0 2 2 2 1 Cytochrome oxidase c assembly COX1 PF00115.20 gi|344213016|ref|YP_004797336.1| - 3.3e-123 411.8 67.0 3.3e-123 411.8 67.0 3.0 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|344213016|ref|YP_004797336.1| - 3.7e-15 56.5 15.5 3.7e-15 56.5 15.5 2.9 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III Spore_YhaL PF14147.6 gi|344213016|ref|YP_004797336.1| - 0.5 10.1 2.5 0.58 9.9 0.0 2.5 3 0 0 3 3 3 0 Sporulation protein YhaL COX4_pro PF03626.14 gi|344213017|ref|YP_004797337.1| - 2e-09 37.7 8.9 3.9e-09 36.8 8.9 1.4 1 1 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV 2Fe-2S_thioredx PF01257.19 gi|344213017|ref|YP_004797337.1| - 0.11 12.3 0.1 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin LrgA PF03788.14 gi|344213017|ref|YP_004797337.1| - 0.2 11.6 4.7 0.93 9.5 4.7 1.8 1 1 0 1 1 1 0 LrgA family DUF3487 PF11990.8 gi|344213018|ref|YP_004797338.1| - 0.44 10.4 3.7 0.25 11.2 1.7 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF2530 PF10745.9 gi|344213018|ref|YP_004797338.1| - 3.6 7.9 10.9 1.9 8.8 7.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) TatC PF00902.18 gi|344213019|ref|YP_004797339.1| - 0.0024 17.7 1.6 0.0024 17.7 1.6 2.4 2 1 1 3 3 3 1 Sec-independent protein translocase protein (TatC) DUF1129 PF06570.11 gi|344213019|ref|YP_004797339.1| - 0.0037 16.8 0.4 0.0045 16.5 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) IRK PF01007.20 gi|344213019|ref|YP_004797339.1| - 0.12 12.2 0.5 0.97 9.2 0.0 2.0 2 0 0 2 2 2 0 Inward rectifier potassium channel transmembrane domain ABC_membrane PF00664.23 gi|344213020|ref|YP_004797340.1| - 8.5e-41 140.4 0.4 1.1e-40 140.0 0.4 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|344213020|ref|YP_004797340.1| - 1.4e-37 129.3 0.1 3.4e-37 128.0 0.0 1.7 2 0 0 2 2 1 1 ABC transporter AAA_22 PF13401.6 gi|344213020|ref|YP_004797340.1| - 0.00017 21.8 0.1 0.0031 17.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|344213020|ref|YP_004797340.1| - 0.00024 21.5 0.2 0.00052 20.4 0.2 1.6 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|344213020|ref|YP_004797340.1| - 0.00052 19.5 0.1 0.026 13.9 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|344213020|ref|YP_004797340.1| - 0.00075 19.4 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|344213020|ref|YP_004797340.1| - 0.0017 18.1 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|344213020|ref|YP_004797340.1| - 0.0026 17.6 0.0 0.0091 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|344213020|ref|YP_004797340.1| - 0.0074 16.4 0.1 0.15 12.1 0.0 2.7 3 0 0 3 3 3 1 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|344213020|ref|YP_004797340.1| - 0.013 15.3 0.1 0.038 13.7 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|344213020|ref|YP_004797340.1| - 0.016 15.4 0.0 0.055 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|344213020|ref|YP_004797340.1| - 0.016 14.9 0.7 0.052 13.3 0.7 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|344213020|ref|YP_004797340.1| - 0.028 13.7 0.0 0.056 12.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|344213020|ref|YP_004797340.1| - 0.031 14.3 0.4 0.25 11.3 0.2 2.6 2 1 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|344213020|ref|YP_004797340.1| - 0.038 14.5 0.0 0.07 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344213020|ref|YP_004797340.1| - 0.053 14.1 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|344213020|ref|YP_004797340.1| - 0.12 12.0 0.1 0.51 10.0 0.1 1.9 1 1 0 1 1 1 0 Guanylate kinase DUF3080 PF11279.8 gi|344213020|ref|YP_004797340.1| - 0.13 11.4 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) AAA_7 PF12775.7 gi|344213020|ref|YP_004797340.1| - 0.15 11.6 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|344213020|ref|YP_004797340.1| - 0.16 12.4 0.1 1.5 9.2 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF192 PF02643.15 gi|344213021|ref|YP_004797341.1| - 2.2e-32 111.1 0.0 3.1e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF1905 PF08922.11 gi|344213021|ref|YP_004797341.1| - 0.042 13.9 0.0 0.092 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Zn-ribbon_8 PF09723.10 gi|344213022|ref|YP_004797342.1| - 0.00014 21.9 3.9 0.013 15.6 0.8 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|344213022|ref|YP_004797342.1| - 0.00074 19.4 0.6 0.00085 19.3 0.6 1.0 1 0 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|344213022|ref|YP_004797342.1| - 0.00094 19.1 1.5 0.0012 18.8 1.5 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|344213022|ref|YP_004797342.1| - 0.0024 17.4 2.0 0.062 12.9 0.2 2.0 1 1 1 2 2 2 1 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|344213022|ref|YP_004797342.1| - 0.0036 17.2 0.3 0.0046 16.9 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|344213022|ref|YP_004797342.1| - 0.005 17.6 1.4 0.21 12.5 0.1 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger DZR PF12773.7 gi|344213022|ref|YP_004797342.1| - 0.0051 16.8 0.4 0.0059 16.6 0.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2H2 PF00096.26 gi|344213022|ref|YP_004797342.1| - 0.0072 16.7 1.6 0.021 15.3 0.1 2.0 2 0 0 2 2 2 1 Zinc finger, C2H2 type C1_2 PF03107.16 gi|344213022|ref|YP_004797342.1| - 0.024 15.0 1.0 0.027 14.8 1.0 1.1 1 0 0 1 1 1 0 C1 domain zf-Mss51 PF13824.6 gi|344213022|ref|YP_004797342.1| - 0.028 14.5 2.0 0.032 14.3 2.0 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.12 gi|344213022|ref|YP_004797342.1| - 0.031 13.8 3.9 0.04 13.4 3.9 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding C1_1 PF00130.22 gi|344213022|ref|YP_004797342.1| - 0.036 14.0 0.2 0.036 13.9 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-H2C2_2 PF13465.6 gi|344213022|ref|YP_004797342.1| - 0.049 14.1 4.8 0.089 13.3 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger double domain zf-C2H2_6 PF13912.6 gi|344213022|ref|YP_004797342.1| - 0.23 11.5 0.1 0.23 11.5 0.1 1.6 2 0 0 2 2 2 0 C2H2-type zinc finger TFIIS_C PF01096.18 gi|344213022|ref|YP_004797342.1| - 0.4 10.6 3.6 1.7 8.5 0.2 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|344213022|ref|YP_004797342.1| - 0.53 10.1 4.7 0.9 9.3 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain HypA PF01155.19 gi|344213022|ref|YP_004797342.1| - 0.62 10.1 2.6 1.1 9.3 2.7 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Anti-TRAP PF15777.5 gi|344213022|ref|YP_004797342.1| - 1.8 8.6 6.1 1 9.4 1.1 2.0 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein SecD-TM1 PF13721.6 gi|344213023|ref|YP_004797343.1| - 0.012 16.1 0.1 0.018 15.5 0.1 1.3 1 0 0 1 1 1 0 SecD export protein N-terminal TM region ACT PF01842.25 gi|344213023|ref|YP_004797343.1| - 0.035 13.9 0.1 0.12 12.1 0.1 2.0 1 0 0 1 1 1 0 ACT domain TetR_C_24 PF17932.1 gi|344213023|ref|YP_004797343.1| - 0.13 12.6 1.5 1.1 9.6 0.3 2.3 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain CagA PF03507.13 gi|344213023|ref|YP_004797343.1| - 0.15 12.0 0.1 0.24 11.3 0.1 1.2 1 0 0 1 1 1 0 CagA exotoxin PRC PF05239.16 gi|344213024|ref|YP_004797344.1| - 0.071 13.2 0.3 0.16 12.1 0.1 1.8 1 1 1 2 2 2 0 PRC-barrel domain Methyltransf_11 PF08241.12 gi|344213025|ref|YP_004797345.1| - 2.4e-11 44.1 0.0 4.9e-11 43.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344213025|ref|YP_004797345.1| - 8.2e-09 36.1 0.0 1.9e-08 34.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344213025|ref|YP_004797345.1| - 0.00048 19.5 0.0 0.00067 19.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|344213025|ref|YP_004797345.1| - 0.0027 17.5 0.0 0.0034 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344213025|ref|YP_004797345.1| - 0.0049 17.6 0.0 0.0083 16.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain HSP20 PF00011.21 gi|344213026|ref|YP_004797346.1| - 1.4e-17 63.7 0.1 1.8e-17 63.3 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|344213026|ref|YP_004797346.1| - 2.8e-09 36.4 0.0 4.4e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA FAD-oxidase_C PF02913.19 gi|344213027|ref|YP_004797347.1| - 3.7e-62 210.2 0.1 1e-61 208.8 0.1 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|344213027|ref|YP_004797347.1| - 5.6e-40 136.3 0.0 1.2e-39 135.3 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|344213027|ref|YP_004797347.1| - 2.5e-09 37.6 4.8 5e-09 36.6 4.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|344213027|ref|YP_004797347.1| - 1.9e-08 34.6 5.3 4.2e-08 33.5 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|344213027|ref|YP_004797347.1| - 8.9e-07 29.0 0.0 0.00022 21.4 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|344213027|ref|YP_004797347.1| - 0.00019 21.5 3.4 0.0086 16.2 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|344213027|ref|YP_004797347.1| - 0.00048 19.6 0.0 0.00077 18.9 0.0 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_9 PF13187.6 gi|344213027|ref|YP_004797347.1| - 0.00051 20.1 1.7 0.028 14.6 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344213027|ref|YP_004797347.1| - 0.012 15.7 1.9 0.17 12.1 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344213027|ref|YP_004797347.1| - 0.26 11.9 7.6 1.7 9.3 7.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344213027|ref|YP_004797347.1| - 0.53 10.2 14.5 0.12 12.3 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344213027|ref|YP_004797347.1| - 7.8 6.8 12.1 0.68 10.1 3.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain RseC_MucC PF04246.12 gi|344213028|ref|YP_004797348.1| - 1.5 8.7 5.2 1.8 8.5 0.9 2.4 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC HisKA_4TM PF16926.5 gi|344213029|ref|YP_004797349.1| - 7e-82 272.8 7.3 1.2e-81 272.1 7.3 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|344213029|ref|YP_004797349.1| - 4.2e-10 40.1 0.0 1e-09 38.9 0.0 1.7 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344213029|ref|YP_004797349.1| - 0.0056 16.6 0.3 0.014 15.4 0.3 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain adh_short PF00106.25 gi|344213029|ref|YP_004797349.1| - 0.06 12.8 0.2 0.15 11.5 0.1 1.6 1 1 1 2 2 2 0 short chain dehydrogenase CSD PF00313.22 gi|344213030|ref|YP_004797350.1| - 3.2e-20 71.7 0.1 3.5e-20 71.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|344213030|ref|YP_004797350.1| - 0.074 12.7 2.5 0.096 12.4 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|344213030|ref|YP_004797350.1| - 0.22 11.5 1.9 0.48 10.4 1.9 1.7 1 1 0 1 1 1 0 S1-like CSD PF00313.22 gi|344213031|ref|YP_004797351.1| - 1.2e-20 73.1 0.1 1.3e-20 73.0 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|344213031|ref|YP_004797351.1| - 0.0088 15.9 0.0 0.0099 15.7 0.0 1.1 1 0 0 1 1 1 1 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|344213031|ref|YP_004797351.1| - 0.016 15.1 1.0 0.024 14.5 1.0 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|344213031|ref|YP_004797351.1| - 0.018 14.7 2.5 0.028 14.1 2.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.8 gi|344213031|ref|YP_004797351.1| - 0.047 13.7 0.0 0.062 13.3 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF DUF429 PF04250.13 gi|344213032|ref|YP_004797352.1| - 2.5e-45 154.9 4.1 2.8e-45 154.7 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) Lar_restr_allev PF14354.6 gi|344213034|ref|YP_004797354.1| - 0.0027 18.0 0.5 0.0036 17.7 0.5 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-HYPF PF07503.12 gi|344213034|ref|YP_004797354.1| - 0.0031 17.2 2.7 0.0085 15.9 0.4 2.1 2 0 0 2 2 2 1 HypF finger Zn-ribbon_8 PF09723.10 gi|344213034|ref|YP_004797354.1| - 0.0054 16.8 2.6 0.015 15.4 2.6 1.7 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|344213034|ref|YP_004797354.1| - 0.008 15.5 2.7 0.66 9.5 1.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|344213034|ref|YP_004797354.1| - 0.021 14.9 2.4 3 7.9 0.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF2197 PF09963.9 gi|344213034|ref|YP_004797354.1| - 0.042 14.1 0.5 0.058 13.6 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) HypA PF01155.19 gi|344213034|ref|YP_004797354.1| - 0.061 13.4 0.6 0.069 13.2 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|344213034|ref|YP_004797354.1| - 0.09 12.8 2.1 1.7 8.7 2.1 2.0 1 1 0 1 1 1 0 CpXC protein zf_UBZ PF18439.1 gi|344213034|ref|YP_004797354.1| - 0.12 12.0 3.2 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2 PF00096.26 gi|344213034|ref|YP_004797354.1| - 0.4 11.2 2.4 18 6.0 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 gi|344213034|ref|YP_004797354.1| - 0.45 10.6 2.8 10 6.2 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger NTP_transferase PF00483.23 gi|344213035|ref|YP_004797355.1| - 1.5e-37 129.5 0.0 1.9e-37 129.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344213035|ref|YP_004797355.1| - 6.9e-16 59.0 0.3 8.3e-16 58.7 0.3 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|344213035|ref|YP_004797355.1| - 7.3e-07 29.1 0.1 1.1e-06 28.5 0.1 1.8 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|344213035|ref|YP_004797355.1| - 0.11 12.3 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF4864 PF16156.5 gi|344213036|ref|YP_004797356.1| - 1.8e-10 41.4 0.0 2.9e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4864) BPD_transp_1 PF00528.22 gi|344213037|ref|YP_004797357.1| - 3.1e-13 49.8 18.1 3.1e-13 49.8 18.1 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344213038|ref|YP_004797358.1| - 4.4e-14 52.6 16.6 4.4e-14 52.6 16.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|344213039|ref|YP_004797359.1| - 1.7e-30 106.8 9.1 2.4e-30 106.3 9.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|344213039|ref|YP_004797359.1| - 3.3e-17 63.4 12.7 6.6e-17 62.4 12.4 1.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344213039|ref|YP_004797359.1| - 0.0023 17.7 0.4 0.0063 16.3 0.4 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Vta1_C PF18097.1 gi|344213039|ref|YP_004797359.1| - 0.67 9.7 4.7 8.4 6.2 0.2 2.6 2 0 0 2 2 2 0 Vta1 C-terminal domain Alpha-amylase PF00128.24 gi|344213040|ref|YP_004797360.1| - 3e-47 161.8 0.0 4.5e-47 161.3 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.8 gi|344213040|ref|YP_004797360.1| - 1.1e-06 28.8 0.0 3.8e-06 27.1 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.18 gi|344213040|ref|YP_004797360.1| - 0.00012 22.5 0.1 0.0033 17.8 0.0 3.0 3 0 0 3 3 3 1 Alpha amylase, C-terminal all-beta domain AMPK1_CBM PF16561.5 gi|344213040|ref|YP_004797360.1| - 0.00072 19.7 0.0 0.0018 18.5 0.0 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase Malt_amylase_C PF16657.5 gi|344213040|ref|YP_004797360.1| - 0.0076 16.4 0.0 0.023 14.8 0.0 1.8 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|344213040|ref|YP_004797360.1| - 0.21 10.6 0.0 0.33 10.0 0.0 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain ABC_tran PF00005.27 gi|344213041|ref|YP_004797361.1| - 6.7e-33 114.1 0.0 1e-32 113.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|344213041|ref|YP_004797361.1| - 8.9e-12 45.0 0.4 2.3e-10 40.5 0.2 3.1 2 1 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|344213041|ref|YP_004797361.1| - 1.6e-09 38.4 0.0 1.8e-08 35.1 0.0 2.8 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|344213041|ref|YP_004797361.1| - 9.4e-08 32.2 0.0 0.0008 19.3 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|344213041|ref|YP_004797361.1| - 1.1e-07 32.0 0.0 5.9e-07 29.7 0.0 2.3 2 1 0 2 2 1 1 TOBE domain SMC_N PF02463.19 gi|344213041|ref|YP_004797361.1| - 0.00018 21.0 0.1 0.00081 18.9 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344213041|ref|YP_004797361.1| - 0.0029 18.0 0.1 0.0046 17.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344213041|ref|YP_004797361.1| - 0.0051 17.1 0.2 0.0079 16.5 0.2 1.5 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|344213041|ref|YP_004797361.1| - 0.018 15.0 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|344213041|ref|YP_004797361.1| - 0.032 14.0 0.1 0.089 12.6 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344213041|ref|YP_004797361.1| - 0.052 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase TAF PF02969.17 gi|344213041|ref|YP_004797361.1| - 0.066 13.4 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) CysA_C_terminal PF17850.1 gi|344213041|ref|YP_004797361.1| - 0.067 13.8 0.1 2.9 8.5 0.0 2.9 2 0 0 2 2 2 0 CysA C-terminal regulatory domain AAA PF00004.29 gi|344213041|ref|YP_004797361.1| - 0.07 13.5 0.0 0.24 11.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|344213041|ref|YP_004797361.1| - 0.071 12.2 0.0 0.09 11.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|344213041|ref|YP_004797361.1| - 0.11 13.1 0.0 0.23 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|344213041|ref|YP_004797361.1| - 0.13 12.5 0.1 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|344213041|ref|YP_004797361.1| - 0.17 12.3 0.0 1.2 9.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_15 PF13175.6 gi|344213041|ref|YP_004797361.1| - 0.2 11.3 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Regulator_TrmB PF11495.8 gi|344213043|ref|YP_004797363.1| - 1.1e-70 237.4 0.1 1.5e-70 237.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|344213043|ref|YP_004797363.1| - 2e-14 53.2 0.0 3.5e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344213043|ref|YP_004797363.1| - 0.00033 20.5 0.0 0.001 18.9 0.0 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344213043|ref|YP_004797363.1| - 0.013 15.4 0.0 0.028 14.3 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|344213043|ref|YP_004797363.1| - 0.02 15.2 0.0 0.051 13.9 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|344213043|ref|YP_004797363.1| - 0.023 14.5 0.0 0.076 12.8 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|344213043|ref|YP_004797363.1| - 0.056 13.5 0.0 0.29 11.2 0.0 2.2 2 1 0 2 2 2 0 Winged helix-turn helix PLDc_2 PF13091.6 gi|344213043|ref|YP_004797363.1| - 0.058 13.3 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain HTH_24 PF13412.6 gi|344213043|ref|YP_004797363.1| - 0.071 12.7 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|344213043|ref|YP_004797363.1| - 0.12 12.3 0.0 0.44 10.5 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain Rossmann-like PF10727.9 gi|344213043|ref|YP_004797363.1| - 0.13 12.2 0.4 0.22 11.4 0.0 1.6 2 0 0 2 2 2 0 Rossmann-like domain HTH_11 PF08279.12 gi|344213043|ref|YP_004797363.1| - 0.18 11.8 0.3 0.8 9.7 0.0 2.1 2 0 0 2 2 2 0 HTH domain Pilin_N PF07790.11 gi|344213044|ref|YP_004797364.1| - 9.1e-18 65.0 0.9 1.7e-17 64.1 0.3 1.7 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal GST_N_2 PF13409.6 gi|344213045|ref|YP_004797365.1| - 7.4e-22 77.4 0.2 3.4e-20 72.1 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|344213045|ref|YP_004797365.1| - 5.8e-13 48.7 0.3 1.1e-12 47.8 0.3 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|344213045|ref|YP_004797365.1| - 1.3e-08 35.0 0.0 3.4e-08 33.6 0.0 1.7 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|344213045|ref|YP_004797365.1| - 7.8e-06 26.2 0.0 0.11 12.9 0.0 2.5 2 0 0 2 2 2 2 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 gi|344213045|ref|YP_004797365.1| - 9.1e-06 25.8 0.0 1.7e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 gi|344213045|ref|YP_004797365.1| - 0.00017 21.3 0.2 0.00031 20.5 0.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain SANT_DAMP1_like PF16282.5 gi|344213045|ref|YP_004797365.1| - 0.036 14.3 0.1 0.11 12.8 0.1 1.8 1 0 0 1 1 1 0 SANT/Myb-like domain of DAMP1 Ribosomal_L16 PF00252.18 gi|344213046|ref|YP_004797366.1| - 6.3e-30 103.9 0.3 7.1e-30 103.7 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e GcnA_N PF18229.1 gi|344213046|ref|YP_004797366.1| - 0.017 15.1 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 N-acetyl-beta-D-glucosaminidase N-terminal domain Usp PF00582.26 gi|344213048|ref|YP_004797368.1| - 1.4e-36 126.1 1.3 1.8e-36 125.7 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|344213048|ref|YP_004797368.1| - 0.0078 15.9 0.6 0.21 11.2 0.3 2.0 1 1 1 2 2 2 2 SRP54-type protein, GTPase domain RimK PF08443.11 gi|344213049|ref|YP_004797369.1| - 6.2e-23 81.4 0.0 8.3e-23 81.0 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|344213049|ref|YP_004797369.1| - 1.5e-10 40.8 0.0 2.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|344213049|ref|YP_004797369.1| - 6.6e-08 32.8 0.0 9.6e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|344213049|ref|YP_004797369.1| - 1.5e-07 30.9 0.0 0.00091 18.6 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|344213049|ref|YP_004797369.1| - 0.0024 17.5 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|344213049|ref|YP_004797369.1| - 0.003 17.1 0.0 0.012 15.2 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus TTL PF03133.15 gi|344213049|ref|YP_004797369.1| - 0.0034 16.6 0.0 0.042 13.0 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family R2K_3 PF14243.6 gi|344213049|ref|YP_004797369.1| - 0.012 15.6 0.6 0.016 15.2 0.6 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 CPSase_L_D2 PF02786.17 gi|344213049|ref|YP_004797369.1| - 0.064 12.7 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain R2K_2 PF18299.1 gi|344213049|ref|YP_004797369.1| - 0.075 12.9 0.1 0.15 12.0 0.1 1.5 1 1 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 ArsA_HSP20 PF17886.1 gi|344213050|ref|YP_004797370.1| - 1.1e-14 53.8 0.0 1.6e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|344213050|ref|YP_004797370.1| - 8.5e-11 41.9 0.1 2.4e-09 37.3 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|344213050|ref|YP_004797370.1| - 0.00013 22.1 2.5 0.00017 21.7 2.5 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|344213050|ref|YP_004797370.1| - 0.046 14.1 0.0 0.063 13.7 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain Frataxin_Cyay PF01491.16 gi|344213050|ref|YP_004797370.1| - 0.19 11.8 0.0 5.3 7.2 0.0 2.5 1 1 1 2 2 2 0 Frataxin-like domain Gp_dh_C PF02800.20 gi|344213051|ref|YP_004797371.1| - 5.6e-59 198.3 0.0 7.8e-59 197.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|344213051|ref|YP_004797371.1| - 2.9e-28 98.2 0.1 5.1e-28 97.4 0.1 1.4 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|344213051|ref|YP_004797371.1| - 0.013 15.6 0.1 0.038 14.1 0.1 1.9 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus PGK PF00162.19 gi|344213052|ref|YP_004797372.1| - 7e-101 337.9 0.1 8.2e-101 337.7 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase MT0933_antitox PF14013.6 gi|344213052|ref|YP_004797372.1| - 0.1 12.9 0.7 3.5 8.0 0.1 3.1 2 1 0 2 2 2 0 MT0933-like antitoxin protein Lum_binding PF00677.17 gi|344213054|ref|YP_004797374.1| - 1.1e-46 156.7 0.2 3.2e-24 84.7 0.1 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.6 gi|344213055|ref|YP_004797375.1| - 2.9e-46 157.4 14.1 2.9e-46 157.4 14.1 1.5 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease DUF2208 PF09973.9 gi|344213055|ref|YP_004797375.1| - 0.12 11.9 1.0 0.29 10.7 1.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) SNO PF01174.19 gi|344213056|ref|YP_004797376.1| - 6.3e-52 176.2 0.0 6.9e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|344213056|ref|YP_004797376.1| - 1.6e-09 37.6 0.0 2.8e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|344213056|ref|YP_004797376.1| - 0.00064 19.4 0.0 0.00081 19.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|344213056|ref|YP_004797376.1| - 0.00071 19.4 0.0 0.0014 18.5 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|344213056|ref|YP_004797376.1| - 0.00079 19.3 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.9 gi|344213056|ref|YP_004797376.1| - 0.087 11.9 0.0 0.43 9.6 0.0 1.9 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal ThiJ_like PF17124.5 gi|344213056|ref|YP_004797376.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 ThiJ/PfpI family-like PRF PF06875.11 gi|344213056|ref|YP_004797376.1| - 0.2 11.0 0.0 0.28 10.6 0.0 1.1 1 0 0 1 1 1 0 Plethodontid receptivity factor PRF PRA-PH PF01503.17 gi|344213057|ref|YP_004797377.1| - 3e-17 62.8 2.0 3.3e-17 62.7 2.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|344213057|ref|YP_004797377.1| - 0.00029 20.9 2.2 0.00029 20.9 2.2 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Response_reg PF00072.24 gi|344213058|ref|YP_004797378.1| - 3.4e-22 78.7 0.9 1.5e-21 76.6 0.0 2.6 2 1 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|344213058|ref|YP_004797378.1| - 4.8e-17 62.5 0.5 3.6e-16 59.7 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344213058|ref|YP_004797378.1| - 4e-12 46.0 0.4 4e-12 46.0 0.4 4.1 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|344213058|ref|YP_004797378.1| - 1.2e-09 38.6 2.9 2.5e-09 37.6 1.7 2.2 2 0 0 2 2 2 1 GAF domain PAS PF00989.25 gi|344213058|ref|YP_004797378.1| - 6.2e-08 32.6 0.0 2.4e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|344213058|ref|YP_004797378.1| - 9.9e-07 29.0 0.0 9.5e-06 25.8 0.0 2.7 3 1 1 4 4 3 1 PAS domain PAS_8 PF13188.7 gi|344213058|ref|YP_004797378.1| - 4.3e-06 26.6 0.0 3.4e-05 23.8 0.0 2.6 3 0 0 3 3 3 1 PAS domain OKR_DC_1_N PF03709.15 gi|344213058|ref|YP_004797378.1| - 6.9e-06 26.3 0.6 6.4e-05 23.2 0.0 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.6 gi|344213058|ref|YP_004797378.1| - 6.6e-05 22.7 0.3 0.019 14.8 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|344213058|ref|YP_004797378.1| - 0.0025 18.2 0.0 0.0099 16.2 0.0 2.0 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|344213058|ref|YP_004797378.1| - 0.005 17.1 1.0 0.041 14.1 0.0 3.0 3 0 0 3 3 3 1 PAS fold Com_YlbF PF06133.11 gi|344213058|ref|YP_004797378.1| - 0.03 14.9 1.3 0.22 12.1 0.8 2.5 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA FleQ PF06490.11 gi|344213058|ref|YP_004797378.1| - 0.067 13.6 0.0 0.29 11.5 0.0 2.1 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ HATPase_c_5 PF14501.6 gi|344213058|ref|YP_004797378.1| - 0.078 12.9 0.2 0.96 9.4 0.0 2.8 3 1 0 3 3 3 0 GHKL domain DUF4350 PF14258.6 gi|344213058|ref|YP_004797378.1| - 3.7 8.1 7.1 4.4 7.8 0.2 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) GramPos_pilinD1 PF16555.5 gi|344213060|ref|YP_004797380.1| - 9.5e-05 22.6 0.3 0.0001 22.5 0.3 1.1 1 0 0 1 1 1 1 Gram-positive pilin subunit D1, N-terminal domain ASCH PF04266.14 gi|344213060|ref|YP_004797380.1| - 0.0099 16.5 0.1 0.019 15.6 0.0 1.4 2 0 0 2 2 2 1 ASCH domain CAML PF14963.6 gi|344213060|ref|YP_004797380.1| - 0.12 12.5 0.2 0.15 12.2 0.2 1.1 1 0 0 1 1 1 0 Calcium signal-modulating cyclophilin ligand NOG1_N PF17835.1 gi|344213061|ref|YP_004797381.1| - 2.5e-36 125.1 0.0 5.9e-36 123.8 0.0 1.6 1 1 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|344213061|ref|YP_004797381.1| - 6.5e-23 80.3 0.0 1.3e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|344213061|ref|YP_004797381.1| - 4.1e-20 72.0 0.0 7.9e-20 71.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|344213061|ref|YP_004797381.1| - 3.6e-11 42.8 0.0 6.1e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|344213061|ref|YP_004797381.1| - 1.2e-05 25.4 0.1 0.43 10.6 0.0 3.1 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|344213061|ref|YP_004797381.1| - 0.01 15.8 0.0 0.11 12.4 0.0 2.5 3 1 0 3 3 3 0 RsgA GTPase Ras PF00071.22 gi|344213061|ref|YP_004797381.1| - 0.011 15.3 0.0 0.045 13.4 0.0 2.0 1 1 0 1 1 1 0 Ras family AAA_16 PF13191.6 gi|344213061|ref|YP_004797381.1| - 0.018 15.4 0.0 0.046 14.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.16 gi|344213061|ref|YP_004797381.1| - 0.029 13.7 0.0 0.052 12.9 0.0 1.5 1 0 0 1 1 1 0 AIG1 family DASH_Dam1 PF08653.10 gi|344213061|ref|YP_004797381.1| - 0.08 12.7 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 DASH complex subunit Dam1 SIMPL PF04402.14 gi|344213062|ref|YP_004797382.1| - 8.4e-36 124.3 18.1 9.7e-36 124.1 18.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF389 PF04087.14 gi|344213063|ref|YP_004797383.1| - 8e-35 119.9 17.0 8e-35 119.9 17.0 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF389) HPP PF04982.13 gi|344213063|ref|YP_004797383.1| - 0.46 10.7 18.6 6.3 7.0 9.9 3.0 2 1 1 3 3 3 0 HPP family MMR_HSR1 PF01926.23 gi|344213064|ref|YP_004797384.1| - 1.3e-17 63.9 0.0 2.1e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|344213064|ref|YP_004797384.1| - 9e-13 48.0 0.1 1.3e-11 44.3 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|344213064|ref|YP_004797384.1| - 2e-06 27.5 0.0 0.00044 19.8 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|344213064|ref|YP_004797384.1| - 9.6e-06 25.6 0.1 0.022 14.7 0.1 2.4 2 1 0 2 2 2 2 RsgA GTPase AIG1 PF04548.16 gi|344213064|ref|YP_004797384.1| - 0.0014 18.0 0.0 0.0028 17.0 0.0 1.5 1 1 1 2 2 2 1 AIG1 family Roc PF08477.13 gi|344213064|ref|YP_004797384.1| - 0.0014 18.8 0.0 0.0026 17.9 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase MeaB PF03308.16 gi|344213064|ref|YP_004797384.1| - 0.011 14.8 0.1 2.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|344213064|ref|YP_004797384.1| - 0.011 15.3 0.0 0.029 14.0 0.0 1.7 2 0 0 2 2 2 0 Ras family AAA_22 PF13401.6 gi|344213064|ref|YP_004797384.1| - 0.02 15.2 0.0 0.51 10.6 0.0 2.5 1 1 1 2 2 2 0 AAA domain TIP49 PF06068.13 gi|344213064|ref|YP_004797384.1| - 0.021 14.1 0.3 0.036 13.3 0.3 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain ABC_tran PF00005.27 gi|344213064|ref|YP_004797384.1| - 0.022 15.2 0.0 0.03 14.8 0.0 1.6 1 1 0 1 1 1 0 ABC transporter Dynamin_N PF00350.23 gi|344213064|ref|YP_004797384.1| - 0.023 14.8 0.1 0.069 13.2 0.1 1.8 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|344213064|ref|YP_004797384.1| - 0.073 12.8 0.0 0.81 9.4 0.0 2.0 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|344213064|ref|YP_004797384.1| - 0.12 12.9 0.0 0.25 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|344213064|ref|YP_004797384.1| - 0.13 12.0 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|344213064|ref|YP_004797384.1| - 0.15 11.8 0.0 0.32 10.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RNA_helicase PF00910.22 gi|344213064|ref|YP_004797384.1| - 0.2 12.1 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Phage_integrase PF00589.22 gi|344213065|ref|YP_004797385.1| - 2.8e-07 30.5 0.0 1.4e-06 28.2 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|344213065|ref|YP_004797385.1| - 6e-07 29.7 3.1 6.9e-07 29.5 0.3 2.4 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|344213065|ref|YP_004797385.1| - 0.015 15.6 0.0 0.03 14.6 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain Phage_int_SAM_4 PF13495.6 gi|344213065|ref|YP_004797385.1| - 0.1 13.0 0.0 0.43 11.1 0.0 1.8 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Mrr_N PF14338.6 gi|344213066|ref|YP_004797386.1| - 2e-05 24.6 0.0 3.7e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Mrr N-terminal domain AbiEi_4 PF13338.6 gi|344213066|ref|YP_004797386.1| - 5.4e-05 23.3 0.0 7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_27 PF13463.6 gi|344213066|ref|YP_004797386.1| - 7.7e-05 23.1 0.1 9.7e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|344213066|ref|YP_004797386.1| - 8.3e-05 22.6 0.0 0.00017 21.5 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344213066|ref|YP_004797386.1| - 0.005 16.4 0.2 0.037 13.6 0.2 2.2 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|344213066|ref|YP_004797386.1| - 0.005 16.8 0.0 0.0083 16.1 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF2161 PF09929.9 gi|344213066|ref|YP_004797386.1| - 0.0052 16.9 0.0 0.0064 16.6 0.0 1.2 1 0 0 1 1 1 1 Putative PD-(D/E)XK phosphodiesterase (DUF2161) HemN_C PF06969.16 gi|344213066|ref|YP_004797386.1| - 0.0054 16.8 0.0 0.0087 16.1 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain Replic_Relax PF13814.6 gi|344213066|ref|YP_004797386.1| - 0.098 12.7 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Ribosomal_S19e PF01090.19 gi|344213066|ref|YP_004797386.1| - 0.14 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S19e Pentapeptide PF00805.22 gi|344213068|ref|YP_004797388.1| - 3e-30 103.5 21.3 1.5e-08 34.1 2.8 5.5 1 1 3 5 5 5 5 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|344213068|ref|YP_004797388.1| - 1.4e-24 86.1 4.1 3e-11 43.3 2.7 3.4 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|344213068|ref|YP_004797388.1| - 1.8e-16 60.0 22.9 3.4e-05 23.9 4.3 5.3 2 2 4 6 6 6 5 Pentapeptide repeats (9 copies) CfAFP PF05264.11 gi|344213068|ref|YP_004797388.1| - 0.02 14.9 0.3 0.23 11.5 0.1 2.4 1 1 2 3 3 3 0 Choristoneura fumiferana antifreeze protein (CfAFP) Toxin_15 PF07906.13 gi|344213068|ref|YP_004797388.1| - 0.078 12.6 1.2 0.092 12.3 0.3 1.6 2 0 0 2 2 2 0 ShET2 enterotoxin, N-terminal region AAA_22 PF13401.6 gi|344213069|ref|YP_004797389.1| - 1.1e-09 38.6 0.1 3.2e-09 37.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|344213069|ref|YP_004797389.1| - 7.6e-09 36.2 3.5 1.6e-07 31.9 3.5 3.0 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|344213069|ref|YP_004797389.1| - 1.3e-06 28.8 0.0 5e-06 27.0 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|344213069|ref|YP_004797389.1| - 0.00093 19.4 1.0 0.018 15.2 0.2 2.7 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|344213069|ref|YP_004797389.1| - 0.0011 19.0 0.2 0.047 13.7 0.0 2.7 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|344213069|ref|YP_004797389.1| - 0.0019 17.7 0.0 0.0047 16.4 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|344213069|ref|YP_004797389.1| - 0.0028 18.2 0.0 0.016 15.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|344213069|ref|YP_004797389.1| - 0.016 15.5 0.2 0.047 14.0 0.2 1.7 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344213069|ref|YP_004797389.1| - 0.017 15.0 0.0 0.052 13.4 0.0 1.8 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea DEAD PF00270.29 gi|344213069|ref|YP_004797389.1| - 0.019 14.7 0.1 3.5 7.4 0.0 2.6 1 1 1 2 2 2 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|344213069|ref|YP_004797389.1| - 0.021 14.8 0.0 0.039 13.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|344213069|ref|YP_004797389.1| - 0.024 14.0 0.1 0.049 13.0 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|344213069|ref|YP_004797389.1| - 0.043 13.5 0.0 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|344213069|ref|YP_004797389.1| - 0.048 13.7 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_11 PF13086.6 gi|344213069|ref|YP_004797389.1| - 0.048 13.4 0.3 0.098 12.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344213069|ref|YP_004797389.1| - 0.05 13.7 0.0 0.095 12.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|344213069|ref|YP_004797389.1| - 0.051 12.7 0.0 0.083 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DUF815 PF05673.13 gi|344213069|ref|YP_004797389.1| - 0.054 12.6 0.0 0.11 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RuvB_N PF05496.12 gi|344213069|ref|YP_004797389.1| - 0.06 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|344213069|ref|YP_004797389.1| - 0.072 13.5 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase GvpD PF07088.11 gi|344213069|ref|YP_004797389.1| - 0.079 11.6 0.4 0.29 9.7 0.0 1.8 2 0 0 2 2 2 0 GvpD gas vesicle protein NTPase_1 PF03266.15 gi|344213069|ref|YP_004797389.1| - 0.11 12.4 1.2 0.71 9.8 0.1 2.6 3 0 0 3 3 3 0 NTPase AAA_14 PF13173.6 gi|344213069|ref|YP_004797389.1| - 0.14 12.2 0.0 0.61 10.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain RHH_1 PF01402.21 gi|344213073|ref|YP_004797393.1| - 0.00021 21.1 0.1 0.00033 20.5 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|344213073|ref|YP_004797393.1| - 0.073 13.2 0.0 0.097 12.8 0.0 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF2027 PF09640.10 gi|344213078|ref|YP_004797398.1| - 0.056 13.0 0.1 0.13 11.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2027) DUF4510 PF14971.6 gi|344213078|ref|YP_004797398.1| - 0.06 13.7 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4510) YnfE PF17452.2 gi|344213078|ref|YP_004797398.1| - 0.065 13.5 1.2 0.37 11.1 0.8 2.6 2 0 0 2 2 2 0 Uncharacterized YnfE-like DUF4381 PF14316.6 gi|344213080|ref|YP_004797400.1| - 0.078 13.2 1.8 0.16 12.2 1.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) WRW PF10206.9 gi|344213080|ref|YP_004797400.1| - 0.11 12.9 0.1 0.68 10.3 0.0 2.0 2 0 0 2 2 2 0 Mitochondrial F1F0-ATP synthase, subunit f Tmemb_14 PF03647.13 gi|344213080|ref|YP_004797400.1| - 0.12 13.1 0.0 0.19 12.5 0.0 1.2 1 0 0 1 1 1 0 Transmembrane proteins 14C CoatB PF10389.9 gi|344213080|ref|YP_004797400.1| - 4.8 7.1 6.0 1.1 9.1 1.9 2.0 2 0 0 2 2 2 0 Bacteriophage coat protein B AAA_30 PF13604.6 gi|344213081|ref|YP_004797401.1| - 0.11 12.1 0.0 0.4 10.4 0.0 1.8 1 1 0 2 2 2 0 AAA domain YjfB_motility PF14070.6 gi|344213083|ref|YP_004797403.1| - 0.061 13.5 1.3 0.39 10.9 0.3 2.0 2 0 0 2 2 2 0 Putative motility protein HTH_15 PF12324.8 gi|344213084|ref|YP_004797404.1| - 0.0022 17.9 0.8 0.0069 16.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of alkylmercury lyase MarR_2 PF12802.7 gi|344213084|ref|YP_004797404.1| - 0.0058 16.5 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|344213084|ref|YP_004797404.1| - 0.099 12.5 0.2 1.6 8.7 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|344213085|ref|YP_004797405.1| - 3.8e-06 26.5 0.0 4.2e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|344213085|ref|YP_004797405.1| - 0.042 13.6 0.0 0.091 12.5 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain UPF0167 PF03691.14 gi|344213086|ref|YP_004797406.1| - 0.028 14.2 0.1 0.031 14.1 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0167) Zn-ribbon_8 PF09723.10 gi|344213086|ref|YP_004797406.1| - 0.68 10.1 5.5 1.5 9.0 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_S10 PF00338.22 gi|344213087|ref|YP_004797407.1| - 3e-26 91.5 0.0 3.4e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|344213088|ref|YP_004797408.1| - 7e-57 192.1 0.0 8.4e-57 191.9 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|344213088|ref|YP_004797408.1| - 1.7e-37 128.1 0.0 4.2e-37 126.9 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|344213088|ref|YP_004797408.1| - 4.2e-16 59.1 2.8 1.9e-15 57.0 0.7 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|344213088|ref|YP_004797408.1| - 6.7e-07 29.4 0.1 5e-06 26.6 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|344213088|ref|YP_004797408.1| - 0.0015 18.5 0.2 0.19 11.6 0.0 2.4 1 1 1 2 2 2 1 RsgA GTPase GTP_EFTU_D4 PF14578.6 gi|344213088|ref|YP_004797408.1| - 0.0072 16.2 0.3 0.021 14.7 0.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.23 gi|344213088|ref|YP_004797408.1| - 0.011 15.8 0.0 1.9 8.5 0.0 2.4 1 1 0 1 1 1 0 Dynamin family SRPRB PF09439.10 gi|344213088|ref|YP_004797408.1| - 0.013 14.9 0.0 0.95 8.9 0.0 2.3 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.12 gi|344213088|ref|YP_004797408.1| - 0.017 14.5 0.0 0.082 12.2 0.0 1.9 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|344213088|ref|YP_004797408.1| - 0.05 13.1 0.0 0.68 9.5 0.0 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B Homoserine_dh PF00742.19 gi|344213089|ref|YP_004797409.1| - 6.8e-49 166.1 0.2 1e-48 165.5 0.2 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|344213089|ref|YP_004797409.1| - 1.3e-08 34.9 0.2 4e-08 33.3 0.1 1.9 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|344213089|ref|YP_004797409.1| - 2.2e-06 28.3 0.9 4.4e-06 27.3 0.3 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|344213089|ref|YP_004797409.1| - 0.0017 18.3 0.1 0.0026 17.7 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|344213089|ref|YP_004797409.1| - 0.0022 18.8 0.1 0.0047 17.7 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|344213089|ref|YP_004797409.1| - 0.011 15.9 0.2 0.063 13.5 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|344213089|ref|YP_004797409.1| - 0.032 13.9 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|344213089|ref|YP_004797409.1| - 0.033 14.7 0.2 0.078 13.5 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase PglD_N PF17836.1 gi|344213089|ref|YP_004797409.1| - 0.036 14.7 0.1 0.1 13.3 0.1 1.8 1 0 0 1 1 1 0 PglD N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|344213089|ref|YP_004797409.1| - 0.043 14.1 0.3 0.093 13.0 0.3 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_Gly3P_dh_N PF01210.23 gi|344213089|ref|YP_004797409.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|344213089|ref|YP_004797409.1| - 0.073 12.4 0.1 0.14 11.5 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|344213089|ref|YP_004797409.1| - 0.091 11.8 0.3 0.13 11.3 0.3 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_8 PF13450.6 gi|344213089|ref|YP_004797409.1| - 0.098 12.9 0.6 0.26 11.5 0.6 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|344213089|ref|YP_004797409.1| - 0.11 12.0 0.1 0.2 11.2 0.1 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACT PF01842.25 gi|344213090|ref|YP_004797410.1| - 0.0011 18.7 0.9 0.12 12.1 0.0 2.8 3 1 0 3 3 3 2 ACT domain Sigma70_r1_1 PF03979.14 gi|344213090|ref|YP_004797410.1| - 0.12 12.5 0.1 0.34 11.0 0.0 1.8 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 TetR_C_22 PF17928.1 gi|344213092|ref|YP_004797412.1| - 0.067 13.5 0.0 0.36 11.2 0.0 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain GTP_EFTU PF00009.27 gi|344213093|ref|YP_004797413.1| - 1.3e-64 217.3 0.4 2.2e-64 216.6 0.4 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|344213093|ref|YP_004797413.1| - 1.5e-24 85.8 0.1 3.4e-23 81.5 0.0 2.9 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|344213093|ref|YP_004797413.1| - 4.4e-23 81.4 0.0 1.3e-22 79.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|344213093|ref|YP_004797413.1| - 1.3e-21 76.5 0.3 1.3e-21 76.5 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|344213093|ref|YP_004797413.1| - 1.5e-16 60.6 1.0 9.8e-16 57.9 1.0 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|344213093|ref|YP_004797413.1| - 3.2e-05 24.0 0.6 9.3e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|344213093|ref|YP_004797413.1| - 0.068 13.0 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|344213093|ref|YP_004797413.1| - 0.08 12.4 0.2 0.22 10.9 0.2 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.22 gi|344213093|ref|YP_004797413.1| - 0.17 11.5 0.0 0.38 10.3 0.0 1.5 1 0 0 1 1 1 0 Ras family Cys_Met_Meta_PP PF01053.20 gi|344213094|ref|YP_004797414.1| - 1.3e-138 461.8 0.0 1.5e-138 461.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|344213094|ref|YP_004797414.1| - 2.7e-10 40.1 0.6 4.9e-10 39.3 0.5 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|344213094|ref|YP_004797414.1| - 4.5e-05 22.8 0.0 6.6e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|344213094|ref|YP_004797414.1| - 0.00098 18.2 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|344213094|ref|YP_004797414.1| - 0.0069 15.7 0.1 0.03 13.6 0.1 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Met_gamma_lyase PF06838.11 gi|344213094|ref|YP_004797414.1| - 0.044 12.3 0.0 0.27 9.7 0.0 2.1 2 1 0 2 2 2 0 Methionine gamma-lyase Ter PF05472.11 gi|344213095|ref|YP_004797415.1| - 0.094 11.7 0.2 0.14 11.2 0.2 1.2 1 0 0 1 1 1 0 DNA replication terminus site-binding protein (Ter protein) PAS_3 PF08447.12 gi|344213096|ref|YP_004797416.1| - 1.3e-49 166.4 2.9 1.7e-12 47.4 0.1 5.5 5 0 0 5 5 5 4 PAS fold PAS_4 PF08448.10 gi|344213096|ref|YP_004797416.1| - 2.1e-40 137.4 12.6 3e-17 62.8 0.1 4.9 4 0 0 4 4 4 4 PAS fold PAS_9 PF13426.7 gi|344213096|ref|YP_004797416.1| - 6.2e-29 100.3 1.5 8.3e-14 51.7 0.0 5.2 5 0 0 5 5 5 4 PAS domain Response_reg PF00072.24 gi|344213096|ref|YP_004797416.1| - 1.2e-22 80.2 0.8 3.4e-22 78.7 0.1 2.2 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.25 gi|344213096|ref|YP_004797416.1| - 4.3e-21 75.0 1.9 4e-08 33.2 0.0 4.7 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|344213096|ref|YP_004797416.1| - 7e-15 55.5 1.3 2e-14 54.0 0.2 2.4 3 0 0 3 3 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344213096|ref|YP_004797416.1| - 5.8e-10 39.1 1.3 5.8e-10 39.1 1.3 3.2 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.7 gi|344213096|ref|YP_004797416.1| - 8.2e-06 25.7 2.3 0.014 15.4 0.1 4.3 4 0 0 4 4 3 1 PAS domain GAF_3 PF13492.6 gi|344213096|ref|YP_004797416.1| - 3.6e-05 24.1 0.0 0.00014 22.2 0.0 2.1 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.15 gi|344213096|ref|YP_004797416.1| - 0.0015 18.7 1.3 0.0047 17.2 0.0 2.6 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|344213096|ref|YP_004797416.1| - 0.0016 18.4 0.3 0.0064 16.5 0.3 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.6 gi|344213096|ref|YP_004797416.1| - 0.0082 16.3 0.0 0.48 10.6 0.0 3.4 3 0 0 3 3 3 1 PAS domain PAS_10 PF13596.6 gi|344213096|ref|YP_004797416.1| - 0.0097 16.5 0.1 2.7 8.6 0.0 3.9 3 1 1 4 4 3 1 PAS domain HATPase_c_3 PF13589.6 gi|344213096|ref|YP_004797416.1| - 0.11 12.3 0.0 0.37 10.6 0.0 1.8 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|344213096|ref|YP_004797416.1| - 5.3 7.2 0.0 5.3 7.2 0.0 4.8 7 0 0 7 7 6 0 PAS fold ZapB PF06005.12 gi|344213096|ref|YP_004797416.1| - 6.8 7.2 10.2 4.5 7.8 0.4 4.3 4 0 0 4 4 4 0 Cell division protein ZapB CbiQ PF02361.16 gi|344213097|ref|YP_004797417.1| - 3.1e-18 66.2 2.1 4.9e-18 65.6 2.1 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|344213098|ref|YP_004797418.1| - 3.4e-29 102.1 0.0 4.6e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344213098|ref|YP_004797418.1| - 1.4e-08 34.9 0.1 0.0045 16.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|344213098|ref|YP_004797418.1| - 5.5e-07 30.1 2.0 1.3e-06 28.9 2.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|344213098|ref|YP_004797418.1| - 3.6e-06 26.6 0.0 1.4e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344213098|ref|YP_004797418.1| - 5.4e-06 26.1 0.1 1.1e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|344213098|ref|YP_004797418.1| - 0.00025 21.0 0.0 0.00044 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|344213098|ref|YP_004797418.1| - 0.00026 21.6 0.0 0.00032 21.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344213098|ref|YP_004797418.1| - 0.0013 19.0 0.1 0.0023 18.2 0.0 1.6 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|344213098|ref|YP_004797418.1| - 0.004 17.7 0.1 0.99 10.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|344213098|ref|YP_004797418.1| - 0.0061 16.3 0.0 0.014 15.2 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|344213098|ref|YP_004797418.1| - 0.0064 16.7 0.0 0.018 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|344213098|ref|YP_004797418.1| - 0.0066 16.2 0.0 0.0093 15.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|344213098|ref|YP_004797418.1| - 0.0082 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.21 gi|344213098|ref|YP_004797418.1| - 0.0094 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|344213098|ref|YP_004797418.1| - 0.01 15.6 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1707 PF08044.11 gi|344213098|ref|YP_004797418.1| - 0.011 15.8 0.9 0.55 10.3 0.2 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) AAA PF00004.29 gi|344213098|ref|YP_004797418.1| - 0.012 16.0 0.0 0.024 15.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|344213098|ref|YP_004797418.1| - 0.02 14.5 0.2 0.056 13.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|344213098|ref|YP_004797418.1| - 0.022 14.3 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region TniB PF05621.11 gi|344213098|ref|YP_004797418.1| - 0.034 13.6 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein cobW PF02492.19 gi|344213098|ref|YP_004797418.1| - 0.037 13.6 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|344213098|ref|YP_004797418.1| - 0.042 13.5 0.1 0.069 12.8 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|344213098|ref|YP_004797418.1| - 0.044 13.1 0.0 0.1 11.8 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin ATPase PF06745.13 gi|344213098|ref|YP_004797418.1| - 0.048 13.0 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_27 PF13514.6 gi|344213098|ref|YP_004797418.1| - 0.075 12.6 0.0 0.21 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|344213098|ref|YP_004797418.1| - 0.098 12.7 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|344213098|ref|YP_004797418.1| - 0.12 12.7 0.1 1.5 9.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.6 gi|344213098|ref|YP_004797418.1| - 0.14 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|344213098|ref|YP_004797418.1| - 0.15 10.7 0.0 0.22 10.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|344213098|ref|YP_004797418.1| - 0.16 12.0 0.0 0.35 10.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain G-alpha PF00503.20 gi|344213098|ref|YP_004797418.1| - 0.22 10.7 0.0 0.31 10.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit Polyoma_lg_T_C PF06431.11 gi|344213098|ref|YP_004797418.1| - 0.24 10.2 0.0 0.28 10.0 0.0 1.1 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus AAA_PrkA PF08298.11 gi|344213098|ref|YP_004797418.1| - 0.31 9.9 0.0 0.44 9.4 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain SART-1 PF03343.13 gi|344213098|ref|YP_004797418.1| - 0.32 9.5 0.6 0.4 9.2 0.6 1.0 1 0 0 1 1 1 0 SART-1 family BioY PF02632.14 gi|344213099|ref|YP_004797419.1| - 2.7e-28 98.7 24.8 2.7e-28 98.7 24.8 1.4 2 0 0 2 2 2 1 BioY family GSDH PF07995.11 gi|344213100|ref|YP_004797420.1| - 1e-87 294.6 0.2 1.3e-87 294.2 0.2 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.9 gi|344213100|ref|YP_004797420.1| - 0.18 11.7 5.7 0.41 10.6 5.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Ribosomal_S7 PF00177.21 gi|344213101|ref|YP_004797421.1| - 6.7e-39 132.9 2.6 8.8e-39 132.5 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e PBECR3 PF18812.1 gi|344213101|ref|YP_004797421.1| - 0.037 14.0 0.1 0.056 13.4 0.1 1.3 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 Ribosom_S12_S23 PF00164.25 gi|344213102|ref|YP_004797422.1| - 3.3e-50 168.5 0.4 4.1e-50 168.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MCPsignal PF00015.21 gi|344213103|ref|YP_004797423.1| - 2.7e-45 154.3 59.3 3.5e-43 147.4 22.1 4.8 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344213103|ref|YP_004797423.1| - 4e-14 52.7 14.6 1.2e-07 32.0 0.0 6.1 6 2 0 6 6 5 2 HAMP domain DUF948 PF06103.11 gi|344213103|ref|YP_004797423.1| - 1.4e-05 25.2 43.6 0.00033 20.9 1.0 7.4 4 1 1 7 7 7 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|344213103|ref|YP_004797423.1| - 3.6e-05 23.8 30.5 0.032 14.3 0.8 5.6 1 1 4 5 5 5 3 Laminin Domain II dCache_1 PF02743.18 gi|344213103|ref|YP_004797423.1| - 5.2e-05 23.2 1.9 5.2e-05 23.2 1.9 4.2 3 2 0 3 3 2 1 Cache domain DHC_N1 PF08385.12 gi|344213103|ref|YP_004797423.1| - 0.00035 19.4 0.0 0.017 13.8 0.0 2.2 1 1 1 2 2 2 1 Dynein heavy chain, N-terminal region 1 BLOC1_2 PF10046.9 gi|344213103|ref|YP_004797423.1| - 0.00038 20.7 25.4 0.51 10.7 0.4 6.1 3 2 1 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 BORCS6 PF10157.9 gi|344213103|ref|YP_004797423.1| - 0.0018 18.5 0.5 0.0018 18.5 0.5 4.2 2 2 0 2 2 2 1 BLOC-1-related complex sub-unit 6 RecG_N PF17190.4 gi|344213103|ref|YP_004797423.1| - 0.02 15.6 5.9 4.5 8.1 0.5 4.5 4 0 0 4 4 4 0 RecG N-terminal helical domain LXG PF04740.12 gi|344213103|ref|YP_004797423.1| - 0.022 14.5 1.0 0.022 14.5 1.0 5.1 1 1 3 4 4 4 0 LXG domain of WXG superfamily RmuC PF02646.16 gi|344213103|ref|YP_004797423.1| - 0.024 13.8 18.4 0.66 9.0 0.1 5.4 2 2 2 5 5 5 0 RmuC family Muted PF14942.6 gi|344213103|ref|YP_004797423.1| - 0.087 13.2 20.1 0.59 10.5 0.3 4.0 2 1 2 4 4 4 0 Organelle biogenesis, Muted-like protein Prominin PF05478.11 gi|344213103|ref|YP_004797423.1| - 0.094 10.7 13.0 0.66 7.9 5.1 2.6 1 1 1 2 2 2 0 Prominin Fib_alpha PF08702.10 gi|344213103|ref|YP_004797423.1| - 0.095 12.9 17.9 0.48 10.6 0.3 4.8 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family CALCOCO1 PF07888.11 gi|344213103|ref|YP_004797423.1| - 0.12 11.2 25.1 0.74 8.6 15.0 2.5 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like BLI1 PF17324.2 gi|344213103|ref|YP_004797423.1| - 0.14 12.8 3.3 29 5.4 1.0 3.5 2 1 0 2 2 2 0 BLOC-1 interactor 1 COG2 PF06148.11 gi|344213103|ref|YP_004797423.1| - 0.16 12.0 23.4 0.31 11.1 0.8 6.1 1 1 6 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 CotJB PF12652.7 gi|344213103|ref|YP_004797423.1| - 0.21 11.8 0.3 3.6 7.9 0.0 2.7 2 0 0 2 2 2 0 CotJB protein RPW8 PF05659.11 gi|344213103|ref|YP_004797423.1| - 0.23 11.1 6.9 17 5.1 0.1 4.5 4 1 1 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ApoO PF09769.9 gi|344213103|ref|YP_004797423.1| - 0.27 11.2 1.9 26 4.8 0.2 3.5 2 2 1 3 3 3 0 Apolipoprotein O DUF1664 PF07889.12 gi|344213103|ref|YP_004797423.1| - 0.34 11.0 32.3 0.34 11.0 1.5 6.0 3 2 3 6 6 5 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|344213103|ref|YP_004797423.1| - 0.4 9.5 28.3 0.13 11.1 3.4 3.7 1 1 2 3 3 3 0 Spc7 kinetochore protein APG17 PF04108.12 gi|344213103|ref|YP_004797423.1| - 0.66 9.0 34.5 0.32 10.1 6.3 3.7 1 1 2 3 3 3 0 Autophagy protein Apg17 DASH_Dam1 PF08653.10 gi|344213103|ref|YP_004797423.1| - 0.82 9.5 6.1 24 4.8 0.0 5.0 7 0 0 7 7 4 0 DASH complex subunit Dam1 Med28 PF11594.8 gi|344213103|ref|YP_004797423.1| - 0.88 9.6 6.9 2.7 8.1 0.3 3.4 2 1 1 3 3 3 0 Mediator complex subunit 28 DASH_Duo1 PF08651.10 gi|344213103|ref|YP_004797423.1| - 1.2 8.9 11.6 9.8 6.0 0.2 5.8 5 1 1 6 6 6 0 DASH complex subunit Duo1 KxDL PF10241.9 gi|344213103|ref|YP_004797423.1| - 1.3 9.4 4.6 13 6.2 0.1 4.4 3 2 3 6 6 6 0 Uncharacterized conserved protein Dor1 PF04124.12 gi|344213103|ref|YP_004797423.1| - 1.3 7.6 14.9 2.8 6.5 0.2 4.3 2 1 2 4 4 4 0 Dor1-like family Hormone_1 PF00103.20 gi|344213103|ref|YP_004797423.1| - 2.6 7.7 3.8 4.3 7.0 0.4 2.9 2 1 0 2 2 2 0 Somatotropin hormone family FAP206 PF12018.8 gi|344213103|ref|YP_004797423.1| - 3.6 7.0 6.1 3 7.3 0.8 3.4 3 1 0 3 3 3 0 Domain of unknown function Fzo_mitofusin PF04799.13 gi|344213103|ref|YP_004797423.1| - 5 6.7 11.6 11 5.6 0.2 4.9 3 2 2 5 5 5 0 fzo-like conserved region Seryl_tRNA_N PF02403.22 gi|344213103|ref|YP_004797423.1| - 5.9 7.2 32.7 0.25 11.6 4.4 5.4 1 1 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain YccJ PF13993.6 gi|344213103|ref|YP_004797423.1| - 7.6 6.9 9.4 4.2 7.8 1.5 3.1 1 1 0 2 2 2 0 YccJ-like protein TMPIT PF07851.13 gi|344213103|ref|YP_004797423.1| - 9.1 5.4 13.2 5.1 6.3 1.6 3.8 2 1 1 4 4 4 0 TMPIT-like protein Snapin_Pallidin PF14712.6 gi|344213103|ref|YP_004797423.1| - 9.3 6.8 13.0 26 5.3 1.5 5.0 3 1 1 5 5 4 0 Snapin/Pallidin CPP1-like PF11833.8 gi|344213104|ref|YP_004797424.1| - 0.24 11.0 1.4 0.34 10.5 1.4 1.3 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like KH_2 PF07650.17 gi|344213105|ref|YP_004797425.1| - 5.1e-15 55.1 0.3 2.2e-08 33.8 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|344213105|ref|YP_004797425.1| - 1.2e-10 41.1 0.1 2.4e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|344213105|ref|YP_004797425.1| - 2.3e-10 40.4 0.1 4e-08 33.2 0.0 2.3 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|344213105|ref|YP_004797425.1| - 0.00064 19.5 0.0 0.4 10.6 0.0 2.3 2 0 0 2 2 2 2 KH domain GGDEF_2 PF17853.1 gi|344213105|ref|YP_004797425.1| - 0.028 14.7 2.6 0.11 12.8 0.2 2.0 1 1 1 2 2 2 0 GGDEF-like domain RNA_pol_Rpb1_5 PF04998.17 gi|344213106|ref|YP_004797426.1| - 1.5e-53 182.0 0.1 2e-53 181.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HHH_4 PF14490.6 gi|344213106|ref|YP_004797426.1| - 0.028 14.4 0.0 1.8 8.6 0.0 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix containing domain RNA_pol_Rpb1_1 PF04997.12 gi|344213107|ref|YP_004797427.1| - 6.8e-113 377.1 0.0 1.1e-112 376.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|344213107|ref|YP_004797427.1| - 3e-68 229.3 0.3 4.9e-68 228.5 0.3 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|344213107|ref|YP_004797427.1| - 4.2e-33 113.5 0.0 1e-32 112.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|344213107|ref|YP_004797427.1| - 6.3e-26 91.4 0.0 1.3e-25 90.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.18 gi|344213107|ref|YP_004797427.1| - 2.4e-25 89.3 0.0 4.1e-25 88.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.22 gi|344213107|ref|YP_004797427.1| - 0.0019 18.2 0.0 0.0053 16.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix RNA_pol_Rpb2_6 PF00562.28 gi|344213108|ref|YP_004797428.1| - 5.3e-128 427.4 0.3 2.9e-127 425.0 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|344213108|ref|YP_004797428.1| - 9.3e-31 106.1 0.3 1.5e-30 105.4 0.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.17 gi|344213108|ref|YP_004797428.1| - 5.5e-08 33.3 4.4 2.4e-07 31.2 4.4 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_4 PF04566.13 gi|344213108|ref|YP_004797428.1| - 4e-06 27.0 0.1 7.2e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 OrfB_Zn_ribbon PF07282.11 gi|344213108|ref|YP_004797428.1| - 0.023 14.6 1.3 0.046 13.6 1.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|344213108|ref|YP_004797428.1| - 0.041 14.1 0.1 0.081 13.1 0.1 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|344213108|ref|YP_004797428.1| - 0.12 12.5 0.6 0.21 11.7 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|344213108|ref|YP_004797428.1| - 1.1 9.0 2.9 0.94 9.2 1.3 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_pol_Rpb2_1 PF04563.15 gi|344213109|ref|YP_004797429.1| - 2e-49 167.9 0.1 2.4e-49 167.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|344213109|ref|YP_004797429.1| - 2.4e-27 95.8 0.1 4.2e-27 95.0 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|344213109|ref|YP_004797429.1| - 1.6e-24 85.9 0.0 3.1e-24 84.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|344213110|ref|YP_004797430.1| - 1.5e-23 82.4 0.8 1.8e-23 82.2 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain SKA2 PF16740.5 gi|344213111|ref|YP_004797431.1| - 0.0006 19.6 0.1 0.44 10.3 0.2 2.4 2 1 0 2 2 2 2 Spindle and kinetochore-associated protein 2 Spectrin PF00435.21 gi|344213111|ref|YP_004797431.1| - 0.012 16.1 0.7 0.1 13.1 0.2 2.3 2 0 0 2 2 2 0 Spectrin repeat LRRFIP PF09738.9 gi|344213111|ref|YP_004797431.1| - 0.016 14.7 1.7 0.096 12.1 0.5 2.0 2 0 0 2 2 2 0 LRRFIP family DUF4140 PF13600.6 gi|344213111|ref|YP_004797431.1| - 0.034 14.6 2.0 0.12 12.8 0.4 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) PmrD PF11183.8 gi|344213111|ref|YP_004797431.1| - 0.064 13.4 0.0 9.5 6.4 0.0 2.9 2 1 0 3 3 3 0 Polymyxin resistance protein PmrD Phage_GP20 PF06810.11 gi|344213111|ref|YP_004797431.1| - 0.1 12.4 0.2 5.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 HEPN PF05168.14 gi|344213111|ref|YP_004797431.1| - 0.12 12.5 0.6 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 HEPN domain Syntaxin-6_N PF09177.11 gi|344213111|ref|YP_004797431.1| - 0.29 11.7 2.8 0.89 10.1 0.5 2.5 2 1 1 3 3 3 0 Syntaxin 6, N-terminal DivIC PF04977.15 gi|344213111|ref|YP_004797431.1| - 0.48 10.2 3.3 0.91 9.3 0.8 2.2 2 0 0 2 2 2 0 Septum formation initiator PP-binding_2 PF14573.6 gi|344213111|ref|YP_004797431.1| - 0.49 10.6 2.8 1.2 9.4 0.7 2.5 2 1 0 2 2 2 0 Acyl-carrier HalX PF08663.10 gi|344213111|ref|YP_004797431.1| - 0.95 9.8 19.1 0.29 11.5 6.2 3.2 3 0 0 3 3 3 0 HalX domain HTH_24 PF13412.6 gi|344213112|ref|YP_004797432.1| - 9.7e-08 31.5 0.1 1.7e-07 30.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344213112|ref|YP_004797432.1| - 0.00011 21.9 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|344213112|ref|YP_004797432.1| - 0.0023 17.8 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344213112|ref|YP_004797432.1| - 0.0024 17.7 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|344213112|ref|YP_004797432.1| - 0.0031 17.3 0.0 0.0057 16.5 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|344213112|ref|YP_004797432.1| - 0.0067 16.1 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|344213112|ref|YP_004797432.1| - 0.015 15.7 0.0 0.021 15.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.10 gi|344213112|ref|YP_004797432.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|344213112|ref|YP_004797432.1| - 0.017 15.2 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|344213112|ref|YP_004797432.1| - 0.053 13.5 0.4 0.18 11.7 0.1 2.0 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain Phage_rep_org_N PF09681.10 gi|344213112|ref|YP_004797432.1| - 0.061 13.2 0.0 0.078 12.9 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_15 PF12324.8 gi|344213112|ref|YP_004797432.1| - 0.07 13.1 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Rrf2 PF02082.20 gi|344213112|ref|YP_004797432.1| - 0.11 12.8 0.0 0.17 12.2 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator MerR PF00376.23 gi|344213112|ref|YP_004797432.1| - 0.13 12.0 0.0 0.74 9.6 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein Metallophos_2 PF12850.7 gi|344213113|ref|YP_004797433.1| - 1.8e-29 103.0 0.2 2.1e-29 102.8 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain F420_ligase PF01996.16 gi|344213114|ref|YP_004797434.1| - 3.9e-59 200.0 0.0 4.8e-59 199.7 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.20 gi|344213115|ref|YP_004797435.1| - 1.5e-59 202.0 12.4 1.9e-59 201.7 12.4 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Beta_elim_lyase PF01212.21 gi|344213117|ref|YP_004797437.1| - 1.5e-70 237.8 0.0 2.7e-70 237.0 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Methyltransf_11 PF08241.12 gi|344213118|ref|YP_004797438.1| - 1.3e-21 77.1 0.0 2e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344213118|ref|YP_004797438.1| - 1.7e-19 70.3 0.0 2.9e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344213118|ref|YP_004797438.1| - 2e-18 66.6 0.0 2.7e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344213118|ref|YP_004797438.1| - 2.5e-12 46.9 0.0 3.4e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344213118|ref|YP_004797438.1| - 1.9e-10 41.3 0.0 2.8e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344213118|ref|YP_004797438.1| - 2.7e-10 40.0 0.0 3.8e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|344213118|ref|YP_004797438.1| - 7.2e-05 21.9 0.0 0.0001 21.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.12 gi|344213118|ref|YP_004797438.1| - 0.00015 21.5 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|344213118|ref|YP_004797438.1| - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|344213118|ref|YP_004797438.1| - 0.0013 18.1 0.0 0.0018 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|344213118|ref|YP_004797438.1| - 0.04 13.0 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin PCMT PF01135.19 gi|344213118|ref|YP_004797438.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|344213118|ref|YP_004797438.1| - 0.1 12.3 0.0 2.5 7.7 0.0 2.1 2 0 0 2 2 2 0 DNA methylase MTS PF05175.14 gi|344213118|ref|YP_004797438.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|344213118|ref|YP_004797438.1| - 0.13 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|344213118|ref|YP_004797438.1| - 0.16 11.9 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ZF-HD_dimer PF04770.12 gi|344213119|ref|YP_004797439.1| - 0.05 13.9 1.0 0.095 13.1 1.0 1.5 1 0 0 1 1 1 0 ZF-HD protein dimerisation region Phosphoprotein PF00922.17 gi|344213119|ref|YP_004797439.1| - 0.58 9.7 5.9 0.68 9.5 5.9 1.1 1 0 0 1 1 1 0 Vesiculovirus phosphoprotein AAA_3 PF07726.11 gi|344213120|ref|YP_004797440.1| - 7e-61 203.8 0.2 1.3e-60 203.0 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|344213120|ref|YP_004797440.1| - 6.5e-21 73.9 0.8 6.5e-21 73.9 0.8 2.0 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|344213120|ref|YP_004797440.1| - 8.5e-14 51.7 0.0 1.5e-13 51.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|344213120|ref|YP_004797440.1| - 1.6e-06 28.6 0.0 4.7e-06 27.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|344213120|ref|YP_004797440.1| - 3.1e-06 26.5 0.0 4.9e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|344213120|ref|YP_004797440.1| - 4.2e-06 26.3 0.1 0.00014 21.4 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|344213120|ref|YP_004797440.1| - 9.1e-06 25.5 0.0 0.0038 16.9 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|344213120|ref|YP_004797440.1| - 0.00014 21.6 0.0 0.0023 17.7 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|344213120|ref|YP_004797440.1| - 0.11 12.8 0.0 0.29 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF58 PF01882.18 gi|344213121|ref|YP_004797441.1| - 3.5e-16 59.3 0.9 8.1e-16 58.1 0.9 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF1541 PF07563.11 gi|344213121|ref|YP_004797441.1| - 0.21 11.5 3.1 11 6.0 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1541) DUF4179 PF13786.6 gi|344213121|ref|YP_004797441.1| - 0.24 11.9 2.2 8.1 7.0 0.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Transglut_core PF01841.19 gi|344213122|ref|YP_004797442.1| - 1.4e-25 89.9 0.1 4.5e-25 88.3 0.1 1.9 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 gi|344213122|ref|YP_004797442.1| - 1.1e-05 25.4 0.5 5.4e-05 23.1 0.0 2.5 2 1 1 3 3 3 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|344213122|ref|YP_004797442.1| - 0.001 19.3 9.3 0.001 19.3 9.3 3.1 4 0 0 4 4 4 1 Domain of unknown function (DUF4129) SUI1 PF01253.22 gi|344213123|ref|YP_004797443.1| - 9.8e-23 80.5 0.0 1.2e-22 80.2 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|344213123|ref|YP_004797443.1| - 0.0016 18.7 0.0 0.0023 18.2 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|344213123|ref|YP_004797443.1| - 0.0074 16.0 0.5 0.0093 15.7 0.5 1.1 1 0 0 1 1 1 1 DTW domain PhnJ PF06007.11 gi|344213124|ref|YP_004797444.1| - 0.00015 20.9 0.1 0.032 13.3 0.1 2.3 2 0 0 2 2 2 2 Phosphonate metabolism protein PhnJ A2M PF00207.22 gi|344213124|ref|YP_004797444.1| - 0.072 12.9 0.1 1.8 8.5 0.1 3.0 2 0 0 2 2 2 0 Alpha-2-macroglobulin family EamA PF00892.20 gi|344213125|ref|YP_004797445.1| - 3.5e-22 79.1 29.2 1.6e-14 54.2 13.5 2.0 2 0 0 2 2 2 2 EamA-like transporter family Phos_pyr_kin PF08543.12 gi|344213127|ref|YP_004797447.1| - 2.5e-82 276.0 6.4 3.9e-82 275.3 6.4 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|344213127|ref|YP_004797447.1| - 2.4e-43 147.6 0.9 6.2e-43 146.3 0.9 1.7 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|344213127|ref|YP_004797447.1| - 3.8e-08 33.0 3.3 6.2e-08 32.3 3.3 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MTD PF01993.18 gi|344213127|ref|YP_004797447.1| - 0.035 13.5 0.1 0.054 12.8 0.1 1.3 1 0 0 1 1 1 0 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase BspA_v PF18220.1 gi|344213127|ref|YP_004797447.1| - 0.18 11.9 0.1 0.34 11.0 0.1 1.3 1 0 0 1 1 1 0 Adhesin BspA variable domain DSBA PF01323.20 gi|344213128|ref|YP_004797448.1| - 2.9e-36 125.1 0.0 3.4e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|344213128|ref|YP_004797448.1| - 1.9e-08 34.7 0.0 4.7e-06 26.9 0.0 2.1 1 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|344213128|ref|YP_004797448.1| - 8.3e-05 23.0 0.4 0.0096 16.4 0.4 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|344213128|ref|YP_004797448.1| - 0.0076 15.9 0.0 0.13 11.9 0.0 2.4 3 0 0 3 3 3 1 Thioredoxin 2-Hacid_dh_C PF02826.19 gi|344213129|ref|YP_004797449.1| - 4.1e-53 179.4 0.0 6.1e-53 178.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|344213129|ref|YP_004797449.1| - 1.2e-06 28.3 0.1 1.6e-06 27.8 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|344213129|ref|YP_004797449.1| - 0.00011 22.4 0.1 0.0002 21.5 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|344213129|ref|YP_004797449.1| - 0.00038 21.0 0.0 0.00077 20.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N PF00107.26 gi|344213129|ref|YP_004797449.1| - 0.011 15.7 0.1 0.24 11.4 0.0 2.5 2 1 0 2 2 2 0 Zinc-binding dehydrogenase AdoHcyase_NAD PF00670.21 gi|344213129|ref|YP_004797449.1| - 0.022 14.8 0.5 0.075 13.1 0.1 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|344213129|ref|YP_004797449.1| - 0.028 14.3 0.1 0.049 13.5 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|344213129|ref|YP_004797449.1| - 0.094 13.0 0.2 0.19 12.0 0.2 1.7 1 1 0 1 1 1 0 TrkA-N domain CT47 PF15623.6 gi|344213129|ref|YP_004797449.1| - 0.12 12.2 0.2 0.19 11.6 0.2 1.2 1 0 0 1 1 1 0 Cancer/testis gene family 47 NAD_binding_7 PF13241.6 gi|344213129|ref|YP_004797449.1| - 0.13 12.7 0.1 0.3 11.5 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TauE PF01925.19 gi|344213131|ref|YP_004797451.1| - 5.4e-30 104.8 20.1 5.4e-30 104.8 20.1 1.7 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.26 gi|344213132|ref|YP_004797452.1| - 8.8e-33 113.8 0.4 1e-32 113.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.13 gi|344213133|ref|YP_004797453.1| - 3.4e-13 49.8 10.5 5.4e-13 49.2 10.5 1.3 1 0 0 1 1 1 1 HPP family DUF2162 PF09930.9 gi|344213133|ref|YP_004797453.1| - 0.24 10.8 11.0 0.044 13.2 7.4 1.6 2 1 0 2 2 2 0 Predicted transporter (DUF2162) GPDPase_memb PF10110.9 gi|344213134|ref|YP_004797454.1| - 5e-08 32.1 1.7 5e-08 32.1 1.7 2.1 1 1 1 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.11 gi|344213134|ref|YP_004797454.1| - 0.00021 21.2 4.3 0.00021 21.2 4.3 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF975) UPF0259 PF06790.11 gi|344213134|ref|YP_004797454.1| - 0.0081 16.0 1.9 0.0081 16.0 1.9 1.9 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0259) EMP70 PF02990.16 gi|344213134|ref|YP_004797454.1| - 2.6 6.6 16.5 0.074 11.7 10.7 1.3 2 0 0 2 2 2 0 Endomembrane protein 70 Thioredoxin PF00085.20 gi|344213135|ref|YP_004797455.1| - 2e-09 37.4 0.0 2.5e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344213135|ref|YP_004797455.1| - 9.3e-07 29.3 0.0 1.9e-05 25.1 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|344213135|ref|YP_004797455.1| - 0.00049 20.1 0.1 0.0011 18.9 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin domain Disulph_isomer PF06491.11 gi|344213135|ref|YP_004797455.1| - 0.013 15.6 0.2 0.021 15.0 0.2 1.3 1 1 0 1 1 1 0 Disulphide isomerase HyaE PF07449.11 gi|344213135|ref|YP_004797455.1| - 0.036 14.0 0.5 0.21 11.6 0.5 1.9 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|344213135|ref|YP_004797455.1| - 0.15 11.3 0.0 0.25 10.7 0.0 1.3 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family Mac PF12464.8 gi|344213136|ref|YP_004797456.1| - 3.3e-20 72.1 0.1 6.4e-20 71.1 0.0 1.5 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.24 gi|344213136|ref|YP_004797456.1| - 4.3e-13 48.4 15.6 7.5e-11 41.3 4.2 3.7 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|344213136|ref|YP_004797456.1| - 5.2e-12 45.3 19.3 2.6e-10 39.9 4.0 4.1 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF460 PF04312.13 gi|344213137|ref|YP_004797457.1| - 5.4e-47 159.0 0.7 1.3e-46 157.9 0.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) FAM76 PF16046.5 gi|344213137|ref|YP_004797457.1| - 0.00046 19.6 8.3 0.00077 18.9 8.3 1.3 1 0 0 1 1 1 1 FAM76 protein acVLRF1 PF18859.1 gi|344213137|ref|YP_004797457.1| - 0.00085 19.6 2.8 0.00085 19.6 2.8 4.3 4 2 1 5 5 4 1 Actinobacteria/chloroflexi VLRF1 release factor DUF4407 PF14362.6 gi|344213137|ref|YP_004797457.1| - 0.005 16.2 11.2 0.005 16.2 11.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4407) DUF4200 PF13863.6 gi|344213137|ref|YP_004797457.1| - 0.0056 17.1 2.8 0.0056 17.1 2.8 3.2 2 1 1 3 3 3 1 Domain of unknown function (DUF4200) DUF3863 PF12979.7 gi|344213137|ref|YP_004797457.1| - 0.026 13.4 0.0 0.049 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3863) DASH_Spc34 PF08657.10 gi|344213137|ref|YP_004797457.1| - 0.037 13.8 7.6 0.095 12.5 7.6 1.8 1 0 0 1 1 1 0 DASH complex subunit Spc34 BtrH_N PF14399.6 gi|344213137|ref|YP_004797457.1| - 0.1 12.9 0.1 18 5.6 0.0 3.1 3 0 0 3 3 3 0 Butirosin biosynthesis protein H, N-terminal COG5 PF10392.9 gi|344213137|ref|YP_004797457.1| - 0.22 11.7 4.1 0.26 11.4 2.9 1.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 ADIP PF11559.8 gi|344213137|ref|YP_004797457.1| - 0.23 11.5 19.6 0.14 12.2 11.0 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF536 PF04394.14 gi|344213137|ref|YP_004797457.1| - 0.25 11.2 3.4 0.91 9.4 3.4 1.9 1 0 0 1 1 1 0 Protein of unknown function, DUF536 Laminin_II PF06009.12 gi|344213137|ref|YP_004797457.1| - 0.28 11.2 8.1 1.1 9.3 7.7 2.2 2 0 0 2 2 2 0 Laminin Domain II Exonuc_VII_L PF02601.15 gi|344213137|ref|YP_004797457.1| - 0.31 10.6 10.1 0.83 9.2 10.1 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit V_ATPase_I PF01496.19 gi|344213137|ref|YP_004797457.1| - 0.61 7.9 5.3 0.88 7.4 5.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ZapB PF06005.12 gi|344213137|ref|YP_004797457.1| - 0.67 10.4 16.2 0.3 11.6 2.9 2.9 2 0 0 2 2 2 0 Cell division protein ZapB PI3K_P85_iSH2 PF16454.5 gi|344213137|ref|YP_004797457.1| - 0.78 9.3 14.8 0.28 10.8 9.0 2.4 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ABC_tran_CTD PF16326.5 gi|344213137|ref|YP_004797457.1| - 0.91 9.8 24.9 0.21 11.8 5.1 4.3 4 0 0 4 4 4 0 ABC transporter C-terminal domain SlyX PF04102.12 gi|344213137|ref|YP_004797457.1| - 1.2 9.8 15.1 0.58 10.8 1.6 3.4 2 1 1 3 3 2 0 SlyX TMF_DNA_bd PF12329.8 gi|344213137|ref|YP_004797457.1| - 1.3 9.1 22.6 0.66 10.0 1.3 2.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding FapA PF03961.13 gi|344213137|ref|YP_004797457.1| - 1.7 7.1 8.1 2.9 6.4 8.1 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Atg14 PF10186.9 gi|344213137|ref|YP_004797457.1| - 3 6.9 19.4 5.5 6.0 8.2 2.3 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|344213137|ref|YP_004797457.1| - 3.2 7.8 14.6 8.4 6.4 14.6 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus PAS_4 PF08448.10 gi|344213138|ref|YP_004797458.1| - 9.8e-17 61.2 0.4 2.4e-16 59.9 0.4 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.26 gi|344213138|ref|YP_004797458.1| - 2.4e-16 60.3 0.0 8.6e-16 58.4 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|344213138|ref|YP_004797458.1| - 3.4e-13 49.6 0.0 1e-12 48.0 0.0 1.8 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|344213138|ref|YP_004797458.1| - 3.4e-10 39.8 1.3 6.3e-10 38.9 1.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344213138|ref|YP_004797458.1| - 1.4e-09 38.1 0.0 3e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|344213138|ref|YP_004797458.1| - 5.2e-07 29.9 0.0 1.3e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_7 PF12860.7 gi|344213138|ref|YP_004797458.1| - 6.3e-05 23.1 0.1 0.00019 21.5 0.1 1.9 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344213138|ref|YP_004797458.1| - 0.0058 16.6 0.1 0.021 14.9 0.1 2.0 1 0 0 1 1 1 1 PAS domain PAS_5 PF07310.13 gi|344213138|ref|YP_004797458.1| - 0.01 15.6 0.2 0.12 12.1 0.0 2.4 2 1 0 2 2 2 0 PAS domain HATPase_c_2 PF13581.6 gi|344213138|ref|YP_004797458.1| - 0.015 15.3 2.0 0.018 15.0 0.1 2.1 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain ApoO PF09769.9 gi|344213138|ref|YP_004797458.1| - 0.073 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Apolipoprotein O HATPase_c_3 PF13589.6 gi|344213138|ref|YP_004797458.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF4418 PF14387.6 gi|344213139|ref|YP_004797459.1| - 0.58 10.4 4.9 0.71 10.1 4.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) SCP2 PF02036.17 gi|344213140|ref|YP_004797460.1| - 5e-10 39.8 0.0 6.7e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family ABC_tran PF00005.27 gi|344213141|ref|YP_004797461.1| - 1.6e-30 106.4 0.0 2.2e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344213141|ref|YP_004797461.1| - 6.9e-12 45.8 0.0 6.5e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344213141|ref|YP_004797461.1| - 0.00062 19.3 0.0 0.038 13.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|344213141|ref|YP_004797461.1| - 0.0018 18.6 0.1 0.02 15.2 0.1 2.0 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|344213141|ref|YP_004797461.1| - 0.0023 17.8 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|344213141|ref|YP_004797461.1| - 0.0024 17.7 0.0 0.043 13.5 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344213141|ref|YP_004797461.1| - 0.0032 17.2 0.1 0.0059 16.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344213141|ref|YP_004797461.1| - 0.0045 17.5 0.0 0.0064 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344213141|ref|YP_004797461.1| - 0.0049 16.6 0.3 0.011 15.4 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|344213141|ref|YP_004797461.1| - 0.0052 17.2 0.1 0.72 10.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|344213141|ref|YP_004797461.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|344213141|ref|YP_004797461.1| - 0.021 15.2 0.1 0.043 14.2 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|344213141|ref|YP_004797461.1| - 0.064 13.3 0.0 0.15 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|344213141|ref|YP_004797461.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|344213142|ref|YP_004797462.1| - 1.4e-30 106.6 0.0 1.8e-30 106.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344213142|ref|YP_004797462.1| - 1.3e-12 48.2 1.6 2.9e-06 27.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|344213142|ref|YP_004797462.1| - 3.1e-09 36.5 0.2 6.7e-09 35.5 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|344213142|ref|YP_004797462.1| - 0.00012 21.6 0.3 0.0034 16.9 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344213142|ref|YP_004797462.1| - 0.00042 20.0 0.0 0.00099 18.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344213142|ref|YP_004797462.1| - 0.00095 19.7 1.4 0.00098 19.7 0.3 1.5 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|344213142|ref|YP_004797462.1| - 0.019 14.9 0.1 0.044 13.7 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_15 PF13175.6 gi|344213142|ref|YP_004797462.1| - 0.05 13.3 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|344213142|ref|YP_004797462.1| - 0.094 12.8 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|344213142|ref|YP_004797462.1| - 0.15 10.9 0.3 6.1 5.5 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|344213142|ref|YP_004797462.1| - 0.16 11.7 0.0 0.19 11.4 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|344213142|ref|YP_004797462.1| - 0.19 12.0 0.0 0.31 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|344213143|ref|YP_004797463.1| - 6e-48 163.3 34.5 6e-48 163.3 34.5 1.9 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|344213143|ref|YP_004797463.1| - 0.031 14.0 0.1 0.064 13.0 0.1 1.5 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 DUF4083 PF13314.6 gi|344213143|ref|YP_004797463.1| - 0.34 10.9 0.2 0.34 10.9 0.2 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4083) BPD_transp_2 PF02653.16 gi|344213144|ref|YP_004797464.1| - 1.9e-45 155.1 39.1 2.2e-45 154.9 39.1 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|344213145|ref|YP_004797465.1| - 3.2e-42 145.4 6.3 4.7e-42 144.9 6.3 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|344213145|ref|YP_004797465.1| - 1.4e-27 96.7 0.0 1.9e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|344213145|ref|YP_004797465.1| - 1.4e-07 30.9 2.7 1.2e-05 24.5 0.5 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.9 gi|344213145|ref|YP_004797465.1| - 0.0042 16.9 1.3 0.0098 15.7 1.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pro_racemase PF05544.11 gi|344213146|ref|YP_004797466.1| - 4.3e-75 252.8 3.2 5.3e-75 252.5 3.2 1.0 1 0 0 1 1 1 1 Proline racemase DAP_epimerase PF01678.19 gi|344213146|ref|YP_004797466.1| - 4.5e-07 30.1 2.3 3.1e-05 24.1 0.1 2.5 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.16 gi|344213146|ref|YP_004797466.1| - 0.00063 19.3 0.3 0.0013 18.3 0.0 1.6 2 0 0 2 2 2 1 Phenazine biosynthesis-like protein PG_binding_4 PF12229.8 gi|344213146|ref|YP_004797466.1| - 0.057 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Pro_dh PF01619.18 gi|344213147|ref|YP_004797467.1| - 3e-27 95.9 0.0 5.6e-27 95.0 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.12 gi|344213148|ref|YP_004797468.1| - 3e-16 58.9 0.1 4.8e-16 58.3 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|344213148|ref|YP_004797468.1| - 8.1e-05 22.1 0.1 0.0002 20.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|344213148|ref|YP_004797468.1| - 0.0001 22.5 0.1 0.00021 21.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase HTH_psq PF05225.16 gi|344213148|ref|YP_004797468.1| - 0.00057 19.6 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_50 PF18024.1 gi|344213148|ref|YP_004797468.1| - 0.00077 19.0 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344213148|ref|YP_004797468.1| - 0.00087 18.9 2.3 0.013 15.2 2.3 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|344213148|ref|YP_004797468.1| - 0.0077 16.2 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|344213148|ref|YP_004797468.1| - 0.015 15.2 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 gi|344213148|ref|YP_004797468.1| - 0.037 13.8 0.0 0.32 10.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_5 PF01022.20 gi|344213148|ref|YP_004797468.1| - 0.038 13.8 0.1 0.089 12.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|344213148|ref|YP_004797468.1| - 0.049 13.3 0.1 0.1 12.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|344213148|ref|YP_004797468.1| - 0.063 13.0 0.4 0.29 10.9 0.4 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|344213148|ref|YP_004797468.1| - 0.065 13.3 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|344213148|ref|YP_004797468.1| - 0.073 12.9 1.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Aldedh PF00171.22 gi|344213149|ref|YP_004797469.1| - 1.7e-143 478.5 0.0 2.1e-143 478.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|344213149|ref|YP_004797469.1| - 0.06 13.4 0.6 0.14 12.2 0.6 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated LuxC PF05893.14 gi|344213149|ref|YP_004797469.1| - 0.19 10.8 0.0 0.36 9.8 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) eIF-1a PF01176.19 gi|344213150|ref|YP_004797470.1| - 1.1e-24 86.0 0.8 1.4e-24 85.7 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.22 gi|344213151|ref|YP_004797471.1| - 4.8e-60 202.4 0.2 1.2e-59 201.1 0.0 1.6 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|344213151|ref|YP_004797471.1| - 6.4e-07 29.5 2.6 1.8e-05 24.8 0.1 2.8 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|344213151|ref|YP_004797471.1| - 4e-05 23.1 0.1 0.0003 20.2 0.1 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|344213151|ref|YP_004797471.1| - 0.00043 19.7 0.0 0.0015 18.0 0.0 1.7 2 0 0 2 2 2 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|344213151|ref|YP_004797471.1| - 0.004 16.0 0.0 0.0059 15.4 0.0 1.3 1 0 0 1 1 1 1 Fungal protein kinase HATPase_c PF02518.26 gi|344213152|ref|YP_004797472.1| - 1.2e-14 54.7 0.1 2.5e-14 53.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344213152|ref|YP_004797472.1| - 4.4e-10 39.5 0.9 1.1e-09 38.2 0.6 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344213152|ref|YP_004797472.1| - 1e-09 38.6 0.0 2.3e-09 37.4 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.10 gi|344213152|ref|YP_004797472.1| - 6.7e-08 32.8 0.1 1.3e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|344213152|ref|YP_004797472.1| - 1.8e-06 28.0 0.0 3.4e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PMC2NT PF08066.12 gi|344213152|ref|YP_004797472.1| - 0.37 11.5 0.1 0.37 11.5 0.1 3.1 4 1 1 5 5 5 0 PMC2NT (NUC016) domain KH_1 PF00013.29 gi|344213153|ref|YP_004797473.1| - 1.5e-13 50.4 1.2 3.1e-07 30.1 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|344213153|ref|YP_004797473.1| - 0.00018 21.2 4.6 0.0054 16.5 0.1 2.7 2 1 1 3 3 3 2 KH domain KH_8 PF17903.1 gi|344213153|ref|YP_004797473.1| - 0.00079 19.5 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain KH_4 PF13083.6 gi|344213153|ref|YP_004797473.1| - 0.3 11.0 7.8 4.8 7.1 0.2 3.3 2 1 1 3 3 3 0 KH domain 4HBT PF03061.22 gi|344213154|ref|YP_004797474.1| - 9.1e-17 61.2 0.1 1.3e-16 60.7 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|344213154|ref|YP_004797474.1| - 0.057 12.7 0.0 0.065 12.5 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase 4HBT_2 PF13279.6 gi|344213154|ref|YP_004797474.1| - 0.13 12.7 0.0 0.15 12.6 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily DUF5357 PF17310.2 gi|344213155|ref|YP_004797475.1| - 0.0089 14.6 0.2 0.01 14.4 0.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5357) DUF4191 PF13829.6 gi|344213155|ref|YP_004797475.1| - 0.12 11.7 0.9 0.13 11.6 0.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) FUSC PF04632.12 gi|344213155|ref|YP_004797475.1| - 1.6 7.2 6.4 1.9 6.9 6.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family ECH_1 PF00378.20 gi|344213159|ref|YP_004797479.1| - 1.2e-37 129.6 0.4 1.4e-37 129.4 0.4 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|344213159|ref|YP_004797479.1| - 6.7e-25 88.3 0.3 7.9e-25 88.0 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF3105 PF11303.8 gi|344213160|ref|YP_004797480.1| - 2.7e-30 105.1 0.1 3.8e-30 104.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) zf-HC2 PF13490.6 gi|344213160|ref|YP_004797480.1| - 0.013 15.7 1.3 0.013 15.7 1.3 2.1 2 0 0 2 2 2 0 Putative zinc-finger DUF3437 PF11919.8 gi|344213160|ref|YP_004797480.1| - 0.092 12.7 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) zf-C2H2_4 PF13894.6 gi|344213160|ref|YP_004797480.1| - 0.12 13.3 0.0 0.27 12.2 0.0 1.6 1 0 0 1 1 1 0 C2H2-type zinc finger NAD_synthase PF02540.17 gi|344213161|ref|YP_004797481.1| - 1.6e-76 256.7 0.0 2e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|344213161|ref|YP_004797481.1| - 2.6e-05 23.2 0.0 0.045 12.5 0.0 2.7 3 0 0 3 3 3 2 tRNA methyl transferase LPD22 PF18834.1 gi|344213161|ref|YP_004797481.1| - 0.00028 21.0 0.4 2.7 8.3 0.0 3.1 3 0 0 3 3 3 2 Large polyvalent protein associated domain 22 Asn_synthase PF00733.21 gi|344213161|ref|YP_004797481.1| - 0.0024 17.6 0.1 0.0047 16.6 0.1 1.3 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|344213161|ref|YP_004797481.1| - 0.04 13.4 0.0 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Rep_fac_C PF08542.11 gi|344213162|ref|YP_004797482.1| - 3.7e-15 56.1 0.2 8.6e-15 54.9 0.2 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|344213162|ref|YP_004797482.1| - 1.1e-13 51.2 0.0 1.8e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|344213162|ref|YP_004797482.1| - 1.1e-09 38.8 0.0 3.4e-09 37.2 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|344213162|ref|YP_004797482.1| - 2.4e-07 31.1 0.0 6.5e-07 29.7 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|344213162|ref|YP_004797482.1| - 4.7e-07 30.4 0.2 4.1e-06 27.3 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|344213162|ref|YP_004797482.1| - 0.00011 22.0 0.1 0.0035 17.0 0.0 2.7 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_14 PF13173.6 gi|344213162|ref|YP_004797482.1| - 0.00047 20.2 0.0 0.0026 17.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|344213162|ref|YP_004797482.1| - 0.0013 17.8 0.0 0.0032 16.6 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein TniB PF05621.11 gi|344213162|ref|YP_004797482.1| - 0.0032 16.9 0.0 0.0075 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein AAA_11 PF13086.6 gi|344213162|ref|YP_004797482.1| - 0.0067 16.2 0.0 0.031 14.1 0.0 1.9 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.13 gi|344213162|ref|YP_004797482.1| - 0.0085 15.3 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|344213162|ref|YP_004797482.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.18 gi|344213162|ref|YP_004797482.1| - 0.014 14.7 0.0 0.055 12.8 0.0 1.9 3 0 0 3 3 3 0 FtsK/SpoIIIE family Tnp_P_element_C PF12596.8 gi|344213162|ref|YP_004797482.1| - 0.016 15.7 0.3 0.052 14.1 0.0 2.0 1 1 1 2 2 2 0 87kDa Transposase NACHT PF05729.12 gi|344213162|ref|YP_004797482.1| - 0.021 14.8 0.0 0.047 13.6 0.0 1.6 1 1 0 1 1 1 0 NACHT domain DEAD PF00270.29 gi|344213162|ref|YP_004797482.1| - 0.022 14.5 0.0 3.5 7.4 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|344213162|ref|YP_004797482.1| - 0.025 14.3 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344213162|ref|YP_004797482.1| - 0.045 13.7 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|344213162|ref|YP_004797482.1| - 0.076 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|344213162|ref|YP_004797482.1| - 0.076 12.3 0.0 0.29 10.4 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|344213162|ref|YP_004797482.1| - 0.081 13.3 0.5 0.24 11.8 0.5 1.9 1 1 0 1 1 1 0 AAA C-terminal domain Rad17 PF03215.15 gi|344213162|ref|YP_004797482.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|344213162|ref|YP_004797482.1| - 0.16 12.5 0.0 1.4 9.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|344213162|ref|YP_004797482.1| - 0.18 12.2 0.0 0.46 10.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Ribosomal_S24e PF01282.19 gi|344213163|ref|YP_004797483.1| - 4.1e-27 93.9 0.2 5.3e-27 93.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Baculo_E25 PF05274.11 gi|344213163|ref|YP_004797483.1| - 0.13 12.1 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein E25 Ribosomal_S27 PF01599.19 gi|344213164|ref|YP_004797484.1| - 1e-10 41.6 3.5 1.2e-10 41.3 3.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Ribosomal_L37e PF01907.19 gi|344213164|ref|YP_004797484.1| - 0.0017 18.5 0.7 0.0021 18.2 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|344213164|ref|YP_004797484.1| - 0.0025 17.8 0.7 0.0032 17.4 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|344213164|ref|YP_004797484.1| - 0.019 14.9 8.2 0.64 10.0 0.9 2.1 1 1 1 2 2 2 0 Nudix N-terminal RNHCP PF12647.7 gi|344213164|ref|YP_004797484.1| - 0.022 14.7 1.1 0.027 14.5 1.1 1.2 1 0 0 1 1 1 0 RNHCP domain RNA_POL_M_15KD PF02150.16 gi|344213164|ref|YP_004797484.1| - 0.022 14.6 1.3 0.039 13.8 1.3 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|344213164|ref|YP_004797484.1| - 0.028 13.8 5.4 0.13 11.8 5.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|344213164|ref|YP_004797484.1| - 0.052 13.7 1.4 0.074 13.2 1.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.11 gi|344213164|ref|YP_004797484.1| - 0.068 13.1 2.8 0.096 12.6 2.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|344213164|ref|YP_004797484.1| - 0.069 12.8 2.8 0.092 12.4 2.8 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit CpXC PF14353.6 gi|344213164|ref|YP_004797484.1| - 0.11 12.6 2.7 0.15 12.1 0.1 1.9 1 1 1 2 2 2 0 CpXC protein zf-NADH-PPase PF09297.11 gi|344213164|ref|YP_004797484.1| - 0.12 12.1 5.3 2.4 7.9 5.3 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Fer4_2 PF12797.7 gi|344213164|ref|YP_004797484.1| - 0.13 12.4 3.3 2.8 8.2 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Zn_Tnp_IS1595 PF12760.7 gi|344213164|ref|YP_004797484.1| - 0.13 12.2 4.6 0.29 11.1 4.7 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|344213164|ref|YP_004797484.1| - 0.14 12.2 1.4 0.15 12.1 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|344213164|ref|YP_004797484.1| - 0.19 11.9 3.2 4.9 7.4 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.6 gi|344213164|ref|YP_004797484.1| - 0.75 9.6 7.7 8 6.3 7.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|344213164|ref|YP_004797484.1| - 0.99 9.1 8.0 0.16 11.5 1.8 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|344213164|ref|YP_004797484.1| - 1.8 8.8 7.3 42 4.4 7.3 2.2 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|344213164|ref|YP_004797484.1| - 4.4 7.5 7.7 40 4.4 7.7 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Peptidase_M22 PF00814.25 gi|344213165|ref|YP_004797485.1| - 9.4e-71 238.7 0.0 1.5e-70 238.0 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|344213165|ref|YP_004797485.1| - 3.3e-05 23.3 0.0 8.4e-05 22.0 0.0 1.6 1 1 1 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Ham1p_like PF01725.16 gi|344213167|ref|YP_004797487.1| - 6.6e-53 179.4 0.1 1.2e-52 178.6 0.1 1.4 1 1 0 1 1 1 1 Ham1 family adh_short PF00106.25 gi|344213168|ref|YP_004797488.1| - 1.9e-47 161.3 0.0 2.7e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|344213168|ref|YP_004797488.1| - 6.6e-31 107.7 0.3 8.3e-31 107.3 0.3 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|344213168|ref|YP_004797488.1| - 8.3e-12 45.4 0.0 1.1e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|344213168|ref|YP_004797488.1| - 1.7e-06 28.0 0.7 0.00042 20.3 0.7 2.2 2 0 0 2 2 2 1 NAD(P)H-binding Glyco_transf_4 PF13439.6 gi|344213168|ref|YP_004797488.1| - 2.7e-05 24.2 1.5 0.07 13.1 0.4 2.7 2 1 0 2 2 2 2 Glycosyltransferase Family 4 HEM4 PF02602.15 gi|344213168|ref|YP_004797488.1| - 0.00022 20.6 0.6 0.013 14.8 0.1 2.1 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD Glyco_trans_4_4 PF13579.6 gi|344213168|ref|YP_004797488.1| - 0.00024 21.6 6.5 0.025 15.0 0.3 2.8 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Epimerase PF01370.21 gi|344213168|ref|YP_004797488.1| - 0.0012 18.4 0.3 0.0023 17.4 0.3 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|344213168|ref|YP_004797488.1| - 0.0017 18.9 1.0 0.0042 17.6 0.2 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|344213168|ref|YP_004797488.1| - 0.0021 18.3 0.2 0.05 13.9 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|344213168|ref|YP_004797488.1| - 0.0022 18.3 0.2 0.0049 17.1 0.2 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|344213168|ref|YP_004797488.1| - 0.0035 16.9 0.5 0.013 15.1 0.2 1.8 2 0 0 2 2 2 1 NmrA-like family 3HCDH_N PF02737.18 gi|344213168|ref|YP_004797488.1| - 0.0053 16.6 0.1 0.01 15.8 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|344213168|ref|YP_004797488.1| - 0.014 15.2 1.8 0.18 11.6 0.2 2.5 2 1 0 3 3 3 0 DNA / pantothenate metabolism flavoprotein Glyco_trans_4_2 PF13477.6 gi|344213168|ref|YP_004797488.1| - 0.026 14.6 0.0 6.9 6.7 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like ADH_zinc_N PF00107.26 gi|344213168|ref|YP_004797488.1| - 0.056 13.4 0.5 3 7.8 0.2 2.5 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Polysacc_synt_2 PF02719.15 gi|344213168|ref|YP_004797488.1| - 0.065 12.3 0.0 0.09 11.9 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Fimbrial PF00419.20 gi|344213168|ref|YP_004797488.1| - 0.091 13.0 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Fimbrial protein ApbA PF02558.16 gi|344213168|ref|YP_004797488.1| - 0.095 12.3 0.1 0.25 11.0 0.1 1.7 2 1 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Glyco_transf_5 PF08323.11 gi|344213168|ref|YP_004797488.1| - 0.12 12.0 0.0 13 5.4 0.0 2.2 2 0 0 2 2 2 0 Starch synthase catalytic domain MCPsignal PF00015.21 gi|344213169|ref|YP_004797489.1| - 7.4e-46 156.1 56.4 1.8e-43 148.3 24.1 4.6 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|344213169|ref|YP_004797489.1| - 5.7e-08 33.0 0.1 5.7e-08 33.0 0.1 5.9 4 2 2 6 6 4 1 HAMP domain DUF1664 PF07889.12 gi|344213169|ref|YP_004797489.1| - 2.9e-05 24.1 34.1 0.017 15.2 0.6 5.5 4 1 3 7 7 6 3 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|344213169|ref|YP_004797489.1| - 4.7e-05 23.6 10.8 1.3 9.4 1.4 5.0 3 2 3 6 6 6 1 Uncharacterized conserved protein Syntaxin-6_N PF09177.11 gi|344213169|ref|YP_004797489.1| - 7.6e-05 23.2 33.9 0.22 12.1 12.4 5.3 2 2 3 5 5 5 1 Syntaxin 6, N-terminal DUF948 PF06103.11 gi|344213169|ref|YP_004797489.1| - 8.4e-05 22.8 54.1 0.092 13.0 4.4 6.9 4 2 3 7 7 6 4 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.12 gi|344213169|ref|YP_004797489.1| - 0.00061 19.9 31.5 0.022 14.8 1.3 5.1 3 2 2 5 5 5 2 TPR/MLP1/MLP2-like protein Syntaxin_2 PF14523.6 gi|344213169|ref|YP_004797489.1| - 0.0015 18.9 16.1 0.039 14.3 0.1 5.1 4 2 2 6 6 4 1 Syntaxin-like protein Alanine_zipper PF11839.8 gi|344213169|ref|YP_004797489.1| - 0.0033 17.8 10.3 0.0033 17.8 10.3 5.3 2 2 4 6 6 5 1 Alanine-zipper, major outer membrane lipoprotein AAA_13 PF13166.6 gi|344213169|ref|YP_004797489.1| - 0.0035 16.1 28.9 0.0089 14.7 8.3 2.2 1 1 1 2 2 2 2 AAA domain BLOC1_2 PF10046.9 gi|344213169|ref|YP_004797489.1| - 0.0049 17.2 30.7 2 8.8 2.4 6.1 3 2 3 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|344213169|ref|YP_004797489.1| - 0.0049 16.9 44.3 0.31 11.1 7.8 6.1 2 2 4 6 6 6 3 Laminin Domain II CorA PF01544.18 gi|344213169|ref|YP_004797489.1| - 0.0076 15.6 5.2 0.0076 15.6 5.2 3.4 1 1 1 3 3 3 1 CorA-like Mg2+ transporter protein Seryl_tRNA_N PF02403.22 gi|344213169|ref|YP_004797489.1| - 0.0093 16.2 27.4 0.4 10.9 1.8 5.7 2 2 5 7 7 7 1 Seryl-tRNA synthetase N-terminal domain CALCOCO1 PF07888.11 gi|344213169|ref|YP_004797489.1| - 0.019 13.9 28.1 0.034 13.0 9.4 2.9 2 1 1 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF2203 PF09969.9 gi|344213169|ref|YP_004797489.1| - 0.02 15.6 30.3 0.18 12.5 4.8 5.2 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) HAUS-augmin3 PF14932.6 gi|344213169|ref|YP_004797489.1| - 0.027 14.1 22.6 0.72 9.4 0.1 3.4 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 TACC_C PF05010.14 gi|344213169|ref|YP_004797489.1| - 0.041 13.7 21.9 0.033 14.0 1.2 4.4 2 2 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Occludin_ELL PF07303.13 gi|344213169|ref|YP_004797489.1| - 0.049 14.3 5.8 3.5 8.4 0.0 4.9 4 2 1 6 6 5 0 Occludin homology domain ATG16 PF08614.11 gi|344213169|ref|YP_004797489.1| - 0.053 13.7 35.4 0.15 12.3 12.7 3.4 4 0 0 4 4 3 0 Autophagy protein 16 (ATG16) WXG100 PF06013.12 gi|344213169|ref|YP_004797489.1| - 0.073 13.3 37.0 2.1 8.6 7.1 7.6 2 1 4 8 8 7 0 Proteins of 100 residues with WXG NAAA-beta PF15508.6 gi|344213169|ref|YP_004797489.1| - 0.11 12.8 0.1 87 3.5 0.0 3.9 3 1 0 3 3 3 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase Spc7 PF08317.11 gi|344213169|ref|YP_004797489.1| - 0.13 11.1 33.2 0.32 9.8 3.6 3.6 2 2 3 5 5 5 0 Spc7 kinetochore protein COG2 PF06148.11 gi|344213169|ref|YP_004797489.1| - 0.18 11.9 29.3 0.69 10.0 0.6 5.7 2 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 RPW8 PF05659.11 gi|344213169|ref|YP_004797489.1| - 0.38 10.4 8.9 12 5.6 0.0 5.2 3 2 3 6 6 6 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Sec34 PF04136.15 gi|344213169|ref|YP_004797489.1| - 0.42 10.5 26.1 1.3 8.9 3.2 5.7 4 3 2 6 6 6 0 Sec34-like family DUF4200 PF13863.6 gi|344213169|ref|YP_004797489.1| - 0.55 10.7 19.3 2.2 8.7 2.5 4.7 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) Cauli_AT PF03233.13 gi|344213169|ref|YP_004797489.1| - 0.73 9.8 14.2 1.3 8.9 0.2 4.4 3 2 2 5 5 5 0 Aphid transmission protein Fib_alpha PF08702.10 gi|344213169|ref|YP_004797489.1| - 0.79 9.9 25.3 0.62 10.2 0.8 4.8 2 2 4 6 6 6 0 Fibrinogen alpha/beta chain family Med30 PF11315.8 gi|344213169|ref|YP_004797489.1| - 0.82 9.9 8.1 0.81 9.9 3.5 3.1 1 1 2 3 3 3 0 Mediator complex subunit 30 MAD PF05557.13 gi|344213169|ref|YP_004797489.1| - 1.1 7.6 23.2 0.55 8.5 11.6 2.6 1 1 1 2 2 2 0 Mitotic checkpoint protein RmuC PF02646.16 gi|344213169|ref|YP_004797489.1| - 1.2 8.2 25.7 1.7 7.7 0.1 5.4 3 3 3 6 6 6 0 RmuC family TRAF_BIRC3_bd PF16673.5 gi|344213169|ref|YP_004797489.1| - 1.4 8.8 6.8 0.41 10.5 0.5 3.4 2 1 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Vip3A_N PF12495.8 gi|344213169|ref|YP_004797489.1| - 1.5 8.7 5.2 1.6 8.6 0.2 3.0 2 1 2 4 4 3 0 Vegetative insecticide protein 3A N terminal ERM PF00769.19 gi|344213169|ref|YP_004797489.1| - 1.6 8.5 32.9 0.014 15.3 9.0 3.5 1 1 2 4 4 4 0 Ezrin/radixin/moesin family Ferritin PF00210.24 gi|344213169|ref|YP_004797489.1| - 1.8 8.5 18.4 0.62 10.0 1.5 3.6 2 1 2 4 4 4 0 Ferritin-like domain Med15_fungi PF05397.12 gi|344213169|ref|YP_004797489.1| - 2.3 8.5 4.8 14 6.0 0.7 3.5 1 1 1 3 3 2 0 Mediator complex subunit 15 DUF5082 PF16888.5 gi|344213169|ref|YP_004797489.1| - 2.3 8.5 18.4 0.63 10.3 2.2 4.4 3 1 1 4 4 4 0 Domain of unknown function (DUF5082) DASH_Dam1 PF08653.10 gi|344213169|ref|YP_004797489.1| - 2.4 8.0 12.0 32 4.4 0.1 6.3 8 0 0 8 8 6 0 DASH complex subunit Dam1 DASH_Duo1 PF08651.10 gi|344213169|ref|YP_004797489.1| - 2.7 7.8 17.1 0.42 10.4 0.2 5.5 7 1 1 8 8 5 0 DASH complex subunit Duo1 Rx_N PF18052.1 gi|344213169|ref|YP_004797489.1| - 2.9 8.2 29.4 2.1 8.7 2.8 6.7 1 1 4 6 6 6 0 Rx N-terminal domain NPV_P10 PF05531.12 gi|344213169|ref|YP_004797489.1| - 3.4 8.2 40.9 3.3 8.3 2.3 6.6 4 3 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Laminin_I PF06008.14 gi|344213169|ref|YP_004797489.1| - 3.8 7.1 37.1 1 9.0 3.3 4.9 2 2 2 5 5 5 0 Laminin Domain I UL11 PF11094.8 gi|344213169|ref|YP_004797489.1| - 6.3 6.8 8.0 0.38 10.7 0.5 2.7 3 0 0 3 3 2 0 Membrane-associated tegument protein ZapB PF06005.12 gi|344213169|ref|YP_004797489.1| - 6.9 7.2 16.6 0.7 10.4 2.3 4.7 2 1 2 4 4 4 0 Cell division protein ZapB TMPIT PF07851.13 gi|344213169|ref|YP_004797489.1| - 7.1 5.8 18.4 2.8 7.1 0.6 4.0 2 2 2 4 4 4 0 TMPIT-like protein Goodbye PF17109.5 gi|344213169|ref|YP_004797489.1| - 7.7 7.0 14.7 27 5.3 1.1 4.9 2 2 3 5 5 5 0 fungal STAND N-terminal Goodbye domain CENP-F_leu_zip PF10473.9 gi|344213169|ref|YP_004797489.1| - 8.9 6.3 29.4 45 4.1 13.6 4.5 3 3 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PIN_3 PF13470.6 gi|344213170|ref|YP_004797490.1| - 4.6e-05 24.1 1.2 0.00034 21.4 1.2 1.9 1 1 0 1 1 1 1 PIN domain TrkA_N PF02254.18 gi|344213172|ref|YP_004797492.1| - 1.3e-25 89.9 0.2 1.8e-25 89.4 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|344213172|ref|YP_004797492.1| - 8.1e-14 51.2 0.1 1.6e-13 50.2 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|344213172|ref|YP_004797492.1| - 1.9e-06 27.6 0.1 2.9e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.21 gi|344213172|ref|YP_004797492.1| - 0.00032 20.8 0.1 0.00046 20.3 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344213172|ref|YP_004797492.1| - 0.00073 18.9 0.1 0.0013 18.1 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|344213172|ref|YP_004797492.1| - 0.0019 17.9 0.1 0.0036 17.0 0.1 1.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|344213172|ref|YP_004797492.1| - 0.0025 17.4 0.1 0.0061 16.1 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|344213172|ref|YP_004797492.1| - 0.0029 18.0 0.0 0.004 17.6 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|344213172|ref|YP_004797492.1| - 0.0039 17.1 0.1 0.0053 16.6 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344213172|ref|YP_004797492.1| - 0.0085 16.4 0.2 0.013 15.8 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|344213172|ref|YP_004797492.1| - 0.014 15.9 0.1 0.026 15.1 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|344213172|ref|YP_004797492.1| - 0.031 14.4 0.1 0.061 13.5 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|344213172|ref|YP_004797492.1| - 0.032 13.5 0.1 0.036 13.3 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|344213172|ref|YP_004797492.1| - 0.034 13.4 0.0 0.039 13.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain XdhC_C PF13478.6 gi|344213172|ref|YP_004797492.1| - 0.055 14.0 0.0 0.086 13.4 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Pyr_redox_2 PF07992.14 gi|344213172|ref|YP_004797492.1| - 0.069 12.4 0.1 0.078 12.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344213172|ref|YP_004797492.1| - 0.11 13.0 0.1 0.22 12.1 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.21 gi|344213172|ref|YP_004797492.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Gp_dh_N PF00044.24 gi|344213172|ref|YP_004797492.1| - 0.15 12.4 0.1 0.26 11.7 0.1 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Big_3_5 PF16640.5 gi|344213173|ref|YP_004797493.1| - 3.6e-05 23.9 23.5 0.0036 17.4 6.7 2.5 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) A2M PF00207.22 gi|344213173|ref|YP_004797493.1| - 0.00054 19.8 0.6 0.5 10.3 0.0 2.5 2 0 0 2 2 2 2 Alpha-2-macroglobulin family Fn3-like PF14310.6 gi|344213173|ref|YP_004797493.1| - 0.0061 16.6 0.4 5.6 7.1 0.0 2.7 2 0 0 2 2 2 2 Fibronectin type III-like domain BsuPI PF12690.7 gi|344213173|ref|YP_004797493.1| - 0.075 13.1 6.0 6 7.0 0.0 4.0 2 2 2 4 4 4 0 Intracellular proteinase inhibitor DUF1616 PF07760.11 gi|344213173|ref|YP_004797493.1| - 0.62 9.4 4.4 8.8 5.6 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1616) Lactamase_B_2 PF12706.7 gi|344213174|ref|YP_004797494.1| - 3.4e-24 85.5 0.7 3.3e-11 43.1 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|344213174|ref|YP_004797494.1| - 3.9e-18 66.2 3.5 5.3e-16 59.2 3.5 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|344213174|ref|YP_004797494.1| - 0.0018 17.9 0.0 0.0035 17.0 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease GFO_IDH_MocA PF01408.22 gi|344213175|ref|YP_004797495.1| - 1.2e-23 84.3 0.1 2.1e-23 83.4 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|344213175|ref|YP_004797495.1| - 9.6e-07 28.8 0.0 1.8e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.12 gi|344213175|ref|YP_004797495.1| - 0.067 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DJ-1_PfpI PF01965.24 gi|344213176|ref|YP_004797496.1| - 1.2e-23 83.8 0.2 2.2e-23 82.9 0.2 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family Fer2_2 PF01799.20 gi|344213176|ref|YP_004797496.1| - 0.035 14.1 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 [2Fe-2S] binding domain GATase_3 PF07685.14 gi|344213176|ref|YP_004797496.1| - 0.19 11.3 0.0 0.38 10.3 0.0 1.5 1 1 1 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain PhzC-PhzF PF02567.16 gi|344213177|ref|YP_004797497.1| - 2e-63 214.5 0.0 2.2e-63 214.4 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|344213177|ref|YP_004797497.1| - 0.095 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Proline racemase Glyoxalase PF00903.25 gi|344213178|ref|YP_004797498.1| - 5.6e-12 46.0 0.2 6.4e-12 45.8 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|344213178|ref|YP_004797498.1| - 2.6e-10 40.6 0.0 3.1e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|344213178|ref|YP_004797498.1| - 1.6e-07 32.1 0.6 2e-07 31.7 0.6 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|344213178|ref|YP_004797498.1| - 0.0047 17.1 0.2 0.052 13.7 0.2 2.0 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_5 PF14696.6 gi|344213178|ref|YP_004797498.1| - 0.0076 16.4 0.0 0.0099 16.1 0.0 1.1 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal DUF5493 PF17597.2 gi|344213180|ref|YP_004797500.1| - 0.067 13.5 0.1 0.074 13.3 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5493) PALP PF00291.25 gi|344213181|ref|YP_004797501.1| - 8.8e-85 284.7 7.0 1.1e-84 284.3 7.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|344213181|ref|YP_004797501.1| - 8.6e-07 29.5 0.1 3.4e-06 27.6 0.1 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|344213181|ref|YP_004797501.1| - 0.00039 20.1 0.1 0.00039 20.1 0.1 2.7 3 0 0 3 3 3 1 ACT domain CagE_TrbE_VirB PF03135.14 gi|344213181|ref|YP_004797501.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.3 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system Pep_deformylase PF01327.21 gi|344213181|ref|YP_004797501.1| - 0.43 10.2 2.8 2.4 7.7 0.1 2.6 2 1 1 3 3 3 0 Polypeptide deformylase FtsA PF14450.6 gi|344213181|ref|YP_004797501.1| - 1.8 9.0 6.2 11 6.4 3.4 2.6 2 1 0 2 2 2 0 Cell division protein FtsA TrkA_N PF02254.18 gi|344213182|ref|YP_004797502.1| - 1.3e-41 141.5 7.5 3.6e-20 72.3 1.2 3.7 3 1 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|344213182|ref|YP_004797502.1| - 2.3e-23 81.8 1.6 3e-11 43.0 0.0 2.9 3 0 0 3 3 3 2 TrkA-C domain FAD_binding_3 PF01494.19 gi|344213182|ref|YP_004797502.1| - 0.009 15.3 0.2 0.014 14.6 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344213182|ref|YP_004797502.1| - 0.016 15.4 0.4 0.16 12.2 0.1 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Ion_trans_2 PF07885.16 gi|344213182|ref|YP_004797502.1| - 0.033 14.1 2.8 0.095 12.7 2.9 1.8 1 1 0 1 1 1 0 Ion channel XdhC_C PF13478.6 gi|344213182|ref|YP_004797502.1| - 0.043 14.3 0.7 0.13 12.8 0.1 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_2 PF03446.15 gi|344213182|ref|YP_004797502.1| - 0.083 13.1 0.5 0.24 11.6 0.0 2.1 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.21 gi|344213182|ref|YP_004797502.1| - 0.085 12.2 0.5 1.7 7.9 0.0 2.4 3 0 0 3 3 3 0 ThiF family NAD_binding_7 PF13241.6 gi|344213182|ref|YP_004797502.1| - 0.17 12.4 1.4 0.48 10.9 0.3 2.4 2 1 0 2 2 2 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|344213182|ref|YP_004797502.1| - 1.1 8.5 5.5 3.4 6.9 5.5 1.8 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Citrate_synt PF00285.21 gi|344213183|ref|YP_004797503.1| - 2.5e-124 415.0 0.0 2.9e-124 414.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TrkA_C PF02080.21 gi|344213184|ref|YP_004797504.1| - 1.5e-28 98.4 0.7 1.2e-15 57.1 0.0 3.1 2 1 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|344213184|ref|YP_004797504.1| - 9.9e-18 64.4 6.7 4.4e-08 33.5 1.7 2.9 2 0 0 2 2 2 2 PhoU domain KfrA_N PF11740.8 gi|344213184|ref|YP_004797504.1| - 0.05 14.3 3.7 1.2 9.9 0.1 3.3 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term CLZ PF16526.5 gi|344213184|ref|YP_004797504.1| - 0.061 13.7 1.0 4.1 7.8 0.0 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels AstE_AspA PF04952.14 gi|344213186|ref|YP_004797506.1| - 5.7e-55 186.5 0.0 6.5e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.25 gi|344213187|ref|YP_004797507.1| - 1.3e-63 215.2 5.3 1.4e-63 215.0 5.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_22 PF13309.6 gi|344213187|ref|YP_004797507.1| - 0.22 11.6 0.0 0.43 10.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain US6 PF17616.2 gi|344213188|ref|YP_004797508.1| - 0.057 13.4 0.0 0.066 13.2 0.0 1.1 1 0 0 1 1 1 0 Viral unique short region 6 DUF1743 PF08489.11 gi|344213190|ref|YP_004797510.1| - 8.8e-40 135.4 0.0 1.5e-39 134.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|344213190|ref|YP_004797510.1| - 0.0005 20.0 0.1 0.0011 18.9 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|344213190|ref|YP_004797510.1| - 0.0015 18.7 0.0 0.0029 17.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn-ribbon_8 PF09723.10 gi|344213190|ref|YP_004797510.1| - 0.0027 17.8 1.7 1.4 9.1 0.2 2.9 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|344213190|ref|YP_004797510.1| - 0.011 15.6 1.0 0.027 14.4 1.0 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|344213190|ref|YP_004797510.1| - 0.023 14.6 0.1 0.044 13.7 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.21 gi|344213190|ref|YP_004797510.1| - 0.028 14.6 0.1 0.051 13.8 0.1 1.4 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain HypA PF01155.19 gi|344213190|ref|YP_004797510.1| - 0.028 14.4 0.3 0.062 13.3 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|344213190|ref|YP_004797510.1| - 0.1 12.6 1.2 0.25 11.4 1.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|344213190|ref|YP_004797510.1| - 0.13 12.2 1.5 0.32 11.0 1.5 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|344213190|ref|YP_004797510.1| - 0.41 11.2 3.2 0.96 10.0 3.2 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HTH_3 PF01381.22 gi|344213191|ref|YP_004797511.1| - 2e-08 34.2 0.0 3.3e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|344213191|ref|YP_004797511.1| - 1.3e-05 25.4 0.1 2.9e-05 24.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|344213191|ref|YP_004797511.1| - 6.4e-05 22.9 0.0 0.00014 21.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|344213191|ref|YP_004797511.1| - 6.4e-05 22.8 0.1 0.00016 21.6 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|344213191|ref|YP_004797511.1| - 0.00087 19.0 0.2 0.0022 17.7 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|344213191|ref|YP_004797511.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|344213191|ref|YP_004797511.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_25 PF13413.6 gi|344213191|ref|YP_004797511.1| - 0.021 14.7 0.7 0.039 13.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|344213191|ref|YP_004797511.1| - 0.056 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_24 PF13412.6 gi|344213191|ref|YP_004797511.1| - 0.069 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_32 PF13565.6 gi|344213191|ref|YP_004797511.1| - 0.097 13.3 0.0 0.24 12.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain NUMOD1 PF07453.13 gi|344213191|ref|YP_004797511.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_38 PF13936.6 gi|344213191|ref|YP_004797511.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|344213191|ref|YP_004797511.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_36 PF13730.6 gi|344213191|ref|YP_004797511.1| - 0.17 11.9 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|344213191|ref|YP_004797511.1| - 0.17 12.0 0.1 0.66 10.1 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AraC PF00165.23 gi|344213191|ref|YP_004797511.1| - 0.2 11.8 0.0 0.44 10.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family GST_N_3 PF13417.6 gi|344213192|ref|YP_004797512.1| - 1.9e-15 57.0 0.0 2.1e-15 56.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|344213192|ref|YP_004797512.1| - 1.4e-12 47.6 0.0 2.1e-12 47.1 0.0 1.3 1 1 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|344213192|ref|YP_004797512.1| - 1.8e-10 40.9 0.0 2.1e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|344213192|ref|YP_004797512.1| - 0.019 15.4 0.2 0.024 15.0 0.2 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|344213192|ref|YP_004797512.1| - 0.13 12.7 0.0 0.19 12.1 0.0 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Pribosyltran PF00156.27 gi|344213193|ref|YP_004797513.1| - 5e-15 55.4 0.8 6.7e-15 54.9 0.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|344213193|ref|YP_004797513.1| - 0.00027 20.5 0.1 0.00034 20.1 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|344213193|ref|YP_004797513.1| - 0.017 15.2 0.3 0.027 14.5 0.2 1.5 2 0 0 2 2 2 0 Phosphoribosyl synthetase-associated domain RGP PF03214.13 gi|344213193|ref|YP_004797513.1| - 0.16 11.1 0.0 0.27 10.3 0.0 1.3 1 1 0 1 1 1 0 Reversibly glycosylated polypeptide PGM_PMM_I PF02878.16 gi|344213194|ref|YP_004797514.1| - 4e-33 114.1 0.0 7.5e-33 113.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|344213194|ref|YP_004797514.1| - 1.5e-29 102.6 0.4 8.7e-29 100.2 0.1 2.4 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|344213194|ref|YP_004797514.1| - 6.7e-17 61.7 0.0 1.3e-16 60.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|344213194|ref|YP_004797514.1| - 3.5e-15 55.9 0.6 1.1e-14 54.4 0.6 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Seryl_tRNA_N PF02403.22 gi|344213195|ref|YP_004797515.1| - 0.0042 17.3 0.3 0.0042 17.3 0.3 2.6 3 1 0 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Sigma70_r1_1 PF03979.14 gi|344213195|ref|YP_004797515.1| - 0.08 13.0 0.1 0.23 11.5 0.1 1.8 1 0 0 1 1 1 0 Sigma-70 factor, region 1.1 HSBP1 PF06825.12 gi|344213195|ref|YP_004797515.1| - 0.088 12.7 2.8 0.68 9.8 0.4 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 EzrA PF06160.12 gi|344213195|ref|YP_004797515.1| - 0.1 10.8 0.1 0.18 9.9 0.1 1.4 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA JIP_LZII PF16471.5 gi|344213195|ref|YP_004797515.1| - 0.86 9.8 5.4 0.38 11.0 0.5 2.7 3 0 0 3 3 3 0 JNK-interacting protein leucine zipper II DUF3450 PF11932.8 gi|344213195|ref|YP_004797515.1| - 1.8 7.8 7.3 0.33 10.2 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) PRA-CH PF01502.18 gi|344213196|ref|YP_004797516.1| - 4.4e-35 119.4 0.4 5.9e-35 118.9 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.11 gi|344213197|ref|YP_004797517.1| - 7.5e-12 45.6 0.6 5.2e-09 36.5 0.0 2.6 3 0 0 3 3 3 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|344213197|ref|YP_004797517.1| - 1.8e-08 34.8 7.4 3.8e-08 33.7 7.4 1.6 1 0 0 1 1 1 1 Type IV leader peptidase family Fer2 PF00111.27 gi|344213198|ref|YP_004797518.1| - 5e-15 55.2 0.2 6.9e-15 54.8 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|344213198|ref|YP_004797518.1| - 0.017 15.1 0.1 0.036 14.1 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|344213199|ref|YP_004797519.1| - 2e-37 129.0 33.5 9.1e-37 126.8 33.5 1.9 1 1 0 1 1 1 1 Phosphate transporter family DUF948 PF06103.11 gi|344213200|ref|YP_004797520.1| - 2.6e-06 27.6 47.4 0.00073 19.7 8.5 3.7 1 1 3 4 4 4 2 Bacterial protein of unknown function (DUF948) UPF0242 PF06785.11 gi|344213200|ref|YP_004797520.1| - 2.2e-05 24.7 9.9 2.2e-05 24.7 9.9 2.2 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus BLOC1_2 PF10046.9 gi|344213200|ref|YP_004797520.1| - 0.00021 21.6 32.4 0.0007 19.8 7.7 4.2 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3540 PF12059.8 gi|344213200|ref|YP_004797520.1| - 0.00028 20.8 13.4 0.00028 20.8 13.4 2.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3540) LMBR1 PF04791.16 gi|344213200|ref|YP_004797520.1| - 0.00034 19.6 6.1 0.00072 18.6 6.0 1.4 1 1 0 1 1 1 1 LMBR1-like membrane protein Laminin_II PF06009.12 gi|344213200|ref|YP_004797520.1| - 0.00049 20.1 40.5 0.096 12.7 12.2 3.4 1 1 2 3 3 3 3 Laminin Domain II MCPsignal PF00015.21 gi|344213200|ref|YP_004797520.1| - 0.001 18.9 43.5 0.0063 16.4 7.2 3.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Alanine_zipper PF11839.8 gi|344213200|ref|YP_004797520.1| - 0.0012 19.1 53.5 0.032 14.6 8.9 4.2 1 1 3 4 4 4 3 Alanine-zipper, major outer membrane lipoprotein TMPIT PF07851.13 gi|344213200|ref|YP_004797520.1| - 0.0031 16.8 29.5 0.031 13.5 8.4 2.2 1 1 1 2 2 2 2 TMPIT-like protein Spc7 PF08317.11 gi|344213200|ref|YP_004797520.1| - 0.0033 16.4 43.3 0.021 13.7 19.5 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein WXG100 PF06013.12 gi|344213200|ref|YP_004797520.1| - 0.0039 17.4 8.7 0.0039 17.4 8.7 4.2 1 1 2 4 4 4 2 Proteins of 100 residues with WXG DUF1664 PF07889.12 gi|344213200|ref|YP_004797520.1| - 0.0055 16.7 30.5 0.025 14.6 9.5 3.0 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|344213200|ref|YP_004797520.1| - 0.0063 15.9 39.7 0.1 11.9 16.9 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Atg14 PF10186.9 gi|344213200|ref|YP_004797520.1| - 0.018 14.1 20.5 0.41 9.7 9.8 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Oleosin PF01277.17 gi|344213200|ref|YP_004797520.1| - 0.019 14.7 1.5 0.019 14.7 1.5 5.5 1 1 3 4 4 3 0 Oleosin Sec34 PF04136.15 gi|344213200|ref|YP_004797520.1| - 0.025 14.5 28.3 0.51 10.2 6.9 3.9 1 1 3 4 4 4 0 Sec34-like family EzrA PF06160.12 gi|344213200|ref|YP_004797520.1| - 0.048 11.8 33.3 0.46 8.6 32.3 1.9 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA CorA PF01544.18 gi|344213200|ref|YP_004797520.1| - 0.057 12.7 17.1 0.46 9.8 10.3 2.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein ERM PF00769.19 gi|344213200|ref|YP_004797520.1| - 0.057 13.2 50.9 2.5 7.8 51.0 2.1 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DUF4201 PF13870.6 gi|344213200|ref|YP_004797520.1| - 0.064 13.0 21.4 0.7 9.6 4.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) Fib_alpha PF08702.10 gi|344213200|ref|YP_004797520.1| - 0.097 12.8 27.4 0.24 11.6 7.1 2.8 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Synaptobrevin PF00957.21 gi|344213200|ref|YP_004797520.1| - 0.14 12.0 27.2 0.57 10.0 7.1 4.3 1 1 2 4 4 4 0 Synaptobrevin ATP-synt_B PF00430.18 gi|344213200|ref|YP_004797520.1| - 0.14 12.2 41.2 0.32 11.1 8.2 3.2 1 1 2 3 3 3 0 ATP synthase B/B' CF(0) ISG65-75 PF11727.8 gi|344213200|ref|YP_004797520.1| - 0.19 10.9 47.3 1.3 8.1 23.9 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein HMMR_N PF15905.5 gi|344213200|ref|YP_004797520.1| - 0.22 11.0 43.6 0.26 10.7 18.4 2.0 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Collagen_mid PF15984.5 gi|344213200|ref|YP_004797520.1| - 0.43 10.3 11.4 0.044 13.5 6.3 1.8 1 1 1 2 2 2 0 Bacterial collagen, middle region Uso1_p115_C PF04871.13 gi|344213200|ref|YP_004797520.1| - 0.44 10.9 50.8 1.2 9.5 21.9 2.6 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region GldM_N PF12081.8 gi|344213200|ref|YP_004797520.1| - 0.46 10.6 38.7 14 5.7 21.5 3.1 1 1 1 2 2 2 0 GldM N-terminal domain V-SNARE_C PF12352.8 gi|344213200|ref|YP_004797520.1| - 0.48 10.7 2.4 12 6.2 0.0 3.5 2 1 1 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus DUF2203 PF09969.9 gi|344213200|ref|YP_004797520.1| - 0.6 10.8 33.7 0.57 10.9 8.9 3.1 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) YtxH PF12732.7 gi|344213200|ref|YP_004797520.1| - 0.6 10.7 55.5 11 6.6 9.8 4.6 1 1 1 2 2 1 0 YtxH-like protein Snapin_Pallidin PF14712.6 gi|344213200|ref|YP_004797520.1| - 0.62 10.5 22.8 0.053 13.9 5.9 3.2 1 1 2 3 3 3 0 Snapin/Pallidin Fez1 PF06818.15 gi|344213200|ref|YP_004797520.1| - 0.77 10.2 40.0 2.9 8.3 16.5 2.1 1 1 1 2 2 2 0 Fez1 RmuC PF02646.16 gi|344213200|ref|YP_004797520.1| - 0.8 8.8 29.1 1.4 8.0 4.6 3.6 1 1 2 3 3 3 0 RmuC family Serine_rich PF08824.10 gi|344213200|ref|YP_004797520.1| - 1.3 9.0 16.3 0.91 9.5 0.8 2.9 1 1 2 3 3 3 0 Serine rich protein interaction domain DUF724 PF05266.14 gi|344213200|ref|YP_004797520.1| - 1.6 8.5 35.3 0.73 9.6 15.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) T2SSM PF04612.12 gi|344213200|ref|YP_004797520.1| - 1.8 8.6 23.8 0.89 9.6 3.7 4.3 1 1 4 5 5 5 0 Type II secretion system (T2SS), protein M Spectrin PF00435.21 gi|344213200|ref|YP_004797520.1| - 2.3 8.8 33.1 7.4 7.1 13.1 3.0 1 1 2 3 3 3 0 Spectrin repeat DUF2959 PF11172.8 gi|344213200|ref|YP_004797520.1| - 2.7 8.1 32.8 1.1 9.4 5.3 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) DUF4200 PF13863.6 gi|344213200|ref|YP_004797520.1| - 2.9 8.3 40.3 0.37 11.2 15.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.12 gi|344213200|ref|YP_004797520.1| - 3.6 7.7 48.6 22 5.1 21.5 3.0 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein MscS_porin PF12795.7 gi|344213200|ref|YP_004797520.1| - 3.8 7.0 33.7 1.1 8.8 22.1 2.1 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain Syntaxin-6_N PF09177.11 gi|344213200|ref|YP_004797520.1| - 4 8.1 36.8 1.4 9.5 15.9 3.2 1 1 1 2 2 1 0 Syntaxin 6, N-terminal DUF3584 PF12128.8 gi|344213200|ref|YP_004797520.1| - 4.8 4.6 38.6 6.4 4.1 38.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) LXG PF04740.12 gi|344213200|ref|YP_004797520.1| - 4.9 6.8 32.3 3.6 7.2 17.7 2.3 1 1 1 2 2 2 0 LXG domain of WXG superfamily GARP PF16731.5 gi|344213200|ref|YP_004797520.1| - 5.3 6.7 55.1 0.96 9.1 21.6 2.2 1 1 1 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma Tropomyosin PF00261.20 gi|344213200|ref|YP_004797520.1| - 5.5 6.3 58.2 2.8 7.3 28.0 2.2 1 1 0 2 2 2 0 Tropomyosin zf-C4H2 PF10146.9 gi|344213200|ref|YP_004797520.1| - 6.4 7.0 31.1 5.5 7.2 2.0 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein DUF3552 PF12072.8 gi|344213200|ref|YP_004797520.1| - 7.3 5.9 45.7 16 4.9 13.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) HemX PF04375.14 gi|344213200|ref|YP_004797520.1| - 7.5 5.7 34.5 2.8e+02 0.6 12.5 3.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4446 PF14584.6 gi|344213200|ref|YP_004797520.1| - 7.9 6.4 23.9 0.14 12.1 0.7 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) CheZ PF04344.13 gi|344213200|ref|YP_004797520.1| - 8.3 6.3 35.0 18 5.2 21.9 2.5 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ ATG16 PF08614.11 gi|344213200|ref|YP_004797520.1| - 8.3 6.6 45.6 1.5 9.0 18.1 2.2 1 1 0 2 2 2 0 Autophagy protein 16 (ATG16) His_biosynth PF00977.21 gi|344213201|ref|YP_004797521.1| - 9e-72 241.2 4.3 1e-71 241.1 4.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|344213201|ref|YP_004797521.1| - 3e-11 43.1 0.4 1.4e-07 31.0 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|344213201|ref|YP_004797521.1| - 1.1e-07 31.3 0.1 0.0059 15.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|344213201|ref|YP_004797521.1| - 1.1e-06 28.3 7.0 4.9e-06 26.2 1.4 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.14 gi|344213201|ref|YP_004797521.1| - 1.4e-05 24.6 4.6 0.019 14.3 0.2 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|344213201|ref|YP_004797521.1| - 0.00018 20.8 0.1 0.0043 16.2 0.0 2.7 2 1 1 3 3 3 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|344213201|ref|YP_004797521.1| - 0.00021 20.8 2.1 0.031 13.7 0.2 2.3 2 0 0 2 2 2 2 PcrB family Trp_syntA PF00290.20 gi|344213201|ref|YP_004797521.1| - 0.00033 19.6 1.2 0.054 12.3 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IMPDH PF00478.25 gi|344213201|ref|YP_004797521.1| - 0.0011 18.1 6.1 0.021 13.8 1.3 2.3 2 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NanE PF04131.14 gi|344213201|ref|YP_004797521.1| - 0.0012 18.0 0.4 0.88 8.7 0.1 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|344213201|ref|YP_004797521.1| - 0.0036 16.4 13.4 0.091 11.8 2.1 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|344213201|ref|YP_004797521.1| - 0.0053 16.1 0.9 0.0088 15.4 0.1 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|344213201|ref|YP_004797521.1| - 0.011 15.2 0.7 0.076 12.4 0.1 2.1 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator DNA_pol_lambd_f PF10391.9 gi|344213201|ref|YP_004797521.1| - 0.039 13.8 0.1 1.7 8.5 0.0 2.8 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda B12-binding PF02310.19 gi|344213201|ref|YP_004797521.1| - 0.063 13.3 3.5 3.6 7.7 0.7 2.7 1 1 1 2 2 2 0 B12 binding domain CoA_binding_2 PF13380.6 gi|344213201|ref|YP_004797521.1| - 0.084 13.4 0.7 0.79 10.2 0.0 2.2 2 0 0 2 2 2 0 CoA binding domain Ribul_P_3_epim PF00834.19 gi|344213201|ref|YP_004797521.1| - 0.18 11.2 3.1 0.32 10.3 0.2 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Glyco_hydro_97 PF10566.9 gi|344213202|ref|YP_004797522.1| - 1.8e-91 306.3 0.0 2.8e-91 305.7 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|344213202|ref|YP_004797522.1| - 2.5e-65 220.2 0.0 6e-65 219.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 N-terminal Glucodextran_C PF09985.9 gi|344213202|ref|YP_004797522.1| - 5.4e-49 166.7 0.0 9.2e-49 165.9 0.0 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase GH97_C PF14509.6 gi|344213202|ref|YP_004797522.1| - 2e-25 88.8 0.0 5.3e-25 87.5 0.0 1.8 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.15 gi|344213202|ref|YP_004797522.1| - 5.5e-06 26.7 1.3 5.5e-06 26.7 1.3 3.2 4 0 0 4 4 3 1 Carbohydrate binding module (family 6) DUF5010_C PF18099.1 gi|344213202|ref|YP_004797522.1| - 0.0047 17.0 0.1 0.028 14.6 0.1 2.4 1 0 0 1 1 1 1 DUF5010 C-terminal domain CBM_35 PF16990.5 gi|344213202|ref|YP_004797522.1| - 0.0061 16.8 1.0 0.018 15.3 0.3 2.2 2 0 0 2 2 2 1 Carbohydrate binding module (family 35) Filamin PF00630.19 gi|344213202|ref|YP_004797522.1| - 0.016 16.0 0.0 31 5.5 0.0 3.4 3 0 0 3 3 3 0 Filamin/ABP280 repeat DUF4249 PF14054.6 gi|344213202|ref|YP_004797522.1| - 0.041 13.5 0.1 0.091 12.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) DUF2799 PF10973.8 gi|344213202|ref|YP_004797522.1| - 0.1 13.0 0.7 0.25 11.8 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2799) Inhibitor_I42 PF09394.10 gi|344213202|ref|YP_004797522.1| - 0.19 12.2 2.2 0.82 10.1 0.1 3.2 4 0 0 4 4 3 0 Chagasin family peptidase inhibitor I42 Methyltransf_25 PF13649.6 gi|344213203|ref|YP_004797523.1| - 1.7e-16 60.7 0.0 3e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344213203|ref|YP_004797523.1| - 6e-16 58.9 0.0 1e-15 58.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344213203|ref|YP_004797523.1| - 1.3e-09 38.0 0.0 1.7e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344213203|ref|YP_004797523.1| - 1.7e-07 31.3 0.0 2.3e-07 30.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344213203|ref|YP_004797523.1| - 2e-07 31.7 0.0 3.4e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344213203|ref|YP_004797523.1| - 0.00011 21.6 0.0 0.00022 20.7 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|344213203|ref|YP_004797523.1| - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.15 gi|344213203|ref|YP_004797523.1| - 0.0014 18.5 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Pox_MCEL PF03291.16 gi|344213203|ref|YP_004797523.1| - 0.0023 17.1 0.0 0.016 14.4 0.0 1.9 2 0 0 2 2 2 1 mRNA capping enzyme MTS PF05175.14 gi|344213203|ref|YP_004797523.1| - 0.051 13.1 0.0 0.08 12.5 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase small domain SnoaL_3 PF13474.6 gi|344213204|ref|YP_004797524.1| - 5.3e-06 26.7 1.5 6.2e-06 26.5 1.5 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.8 gi|344213204|ref|YP_004797524.1| - 0.046 13.4 0.3 0.18 11.5 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3225) NTF2 PF02136.20 gi|344213204|ref|YP_004797524.1| - 0.093 13.3 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain MutS_V PF00488.21 gi|344213205|ref|YP_004797525.1| - 3.6e-82 275.0 0.0 6.1e-82 274.2 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|344213205|ref|YP_004797525.1| - 1.6e-35 123.0 5.1 2.6e-35 122.4 5.1 1.3 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|344213205|ref|YP_004797525.1| - 2e-26 92.5 0.0 3.7e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|344213205|ref|YP_004797525.1| - 1.2e-25 89.6 0.9 2.5e-25 88.7 0.9 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|344213205|ref|YP_004797525.1| - 2.4e-21 76.5 0.0 6.2e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.6 gi|344213205|ref|YP_004797525.1| - 0.14 12.2 0.0 0.56 10.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.26 gi|344213206|ref|YP_004797526.1| - 8.6e-18 64.9 0.0 2.6e-17 63.3 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|344213206|ref|YP_004797526.1| - 2.2e-16 60.4 0.4 1.2e-15 58.0 0.4 2.4 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.24 gi|344213206|ref|YP_004797526.1| - 5.9e-16 58.6 0.0 1.7e-15 57.1 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|344213206|ref|YP_004797526.1| - 2e-15 57.0 0.4 8e-15 55.0 0.4 2.1 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|344213206|ref|YP_004797526.1| - 4.9e-14 52.1 0.1 4.9e-14 52.1 0.1 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344213206|ref|YP_004797526.1| - 2.8e-10 40.4 0.0 6.8e-10 39.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344213206|ref|YP_004797526.1| - 1.5e-06 28.1 0.0 7.1e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|344213206|ref|YP_004797526.1| - 1.1e-05 25.6 0.0 8.6e-05 22.8 0.0 2.5 3 0 0 3 3 3 1 PAS fold GAF_3 PF13492.6 gi|344213206|ref|YP_004797526.1| - 1.5e-05 25.3 0.0 2.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|344213206|ref|YP_004797526.1| - 3.9e-05 23.9 0.1 0.00019 21.7 0.0 2.2 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.6 gi|344213206|ref|YP_004797526.1| - 0.0089 16.0 0.1 0.029 14.3 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain SPOB_a PF14689.6 gi|344213206|ref|YP_004797526.1| - 0.16 11.7 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain ABC_tran PF00005.27 gi|344213207|ref|YP_004797527.1| - 4.5e-30 105.0 0.0 7.8e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344213207|ref|YP_004797527.1| - 6.1e-10 39.4 4.1 7.2e-06 26.0 0.1 2.8 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system MukB PF04310.12 gi|344213207|ref|YP_004797527.1| - 0.0034 17.2 0.0 0.0055 16.5 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_29 PF13555.6 gi|344213207|ref|YP_004797527.1| - 0.0073 16.0 0.2 0.014 15.2 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|344213207|ref|YP_004797527.1| - 0.0097 16.6 0.0 0.023 15.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|344213207|ref|YP_004797527.1| - 0.021 15.3 0.4 0.038 14.5 0.4 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|344213207|ref|YP_004797527.1| - 0.022 14.2 2.1 0.29 10.5 2.1 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344213207|ref|YP_004797527.1| - 0.023 15.1 0.1 0.063 13.7 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344213207|ref|YP_004797527.1| - 0.026 15.0 0.1 0.092 13.2 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|344213207|ref|YP_004797527.1| - 0.053 13.4 0.9 0.67 9.8 0.0 2.6 2 1 1 3 3 3 0 NTPase AAA_19 PF13245.6 gi|344213207|ref|YP_004797527.1| - 0.088 13.1 0.1 0.15 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|344213207|ref|YP_004797527.1| - 0.089 12.5 0.0 0.3 10.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|344213207|ref|YP_004797527.1| - 0.13 12.5 2.1 1.1 9.5 2.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|344213207|ref|YP_004797527.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|344213207|ref|YP_004797527.1| - 0.15 12.0 0.1 5.5 7.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.7 gi|344213208|ref|YP_004797528.1| - 0.19 10.8 19.5 0.006 15.7 12.8 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein LolA_like PF17131.4 gi|344213209|ref|YP_004797529.1| - 4.2e-07 29.9 0.3 0.00014 21.7 0.1 2.7 2 1 1 3 3 3 2 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|344213209|ref|YP_004797529.1| - 0.0066 16.0 0.1 0.015 14.9 0.0 1.6 2 0 0 2 2 2 1 MucB/RseB N-terminal domain Rieske_3 PF18465.1 gi|344213209|ref|YP_004797529.1| - 0.027 14.7 1.5 5.6 7.3 0.1 2.6 3 0 0 3 3 3 0 Rieske 3Fe-4S LolA_like PF17131.4 gi|344213210|ref|YP_004797530.1| - 5.5e-08 32.8 2.5 3.3e-05 23.7 0.0 3.2 2 1 1 3 3 3 2 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|344213210|ref|YP_004797530.1| - 9.5e-05 22.0 0.1 0.00026 20.6 0.0 2.1 2 1 0 2 2 2 1 MucB/RseB N-terminal domain PA14 PF07691.12 gi|344213210|ref|YP_004797530.1| - 0.021 14.7 1.2 0.039 13.8 0.3 2.0 2 0 0 2 2 2 0 PA14 domain Pilin_N PF07790.11 gi|344213210|ref|YP_004797530.1| - 0.071 14.0 0.7 0.28 12.2 0.7 2.0 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal HTH_20 PF12840.7 gi|344213211|ref|YP_004797531.1| - 2e-10 40.6 0.0 3.3e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344213211|ref|YP_004797531.1| - 3.7e-06 26.7 0.0 6.6e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|344213211|ref|YP_004797531.1| - 6.6e-06 25.8 0.0 1.2e-05 25.0 0.0 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344213211|ref|YP_004797531.1| - 1.7e-05 24.3 0.0 3.3e-05 23.4 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344213211|ref|YP_004797531.1| - 0.00014 21.7 0.0 0.0004 20.2 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|344213211|ref|YP_004797531.1| - 0.00025 21.0 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|344213211|ref|YP_004797531.1| - 0.00036 20.4 0.0 0.00056 19.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|344213211|ref|YP_004797531.1| - 0.00053 19.8 0.0 0.00076 19.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|344213211|ref|YP_004797531.1| - 0.0012 18.6 0.0 0.0022 17.8 0.0 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|344213211|ref|YP_004797531.1| - 0.0017 18.3 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FUR PF01475.19 gi|344213211|ref|YP_004797531.1| - 0.0038 17.4 0.0 0.0045 17.1 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR PF01047.22 gi|344213211|ref|YP_004797531.1| - 0.018 15.0 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.6 gi|344213211|ref|YP_004797531.1| - 0.019 14.8 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF1492 PF07374.11 gi|344213211|ref|YP_004797531.1| - 0.02 15.0 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) Pro-kuma_activ PF09286.11 gi|344213211|ref|YP_004797531.1| - 0.046 14.0 0.0 0.056 13.7 0.0 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain DUF2250 PF10007.9 gi|344213211|ref|YP_004797531.1| - 0.049 13.7 0.0 0.068 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) ArsR PF09824.9 gi|344213211|ref|YP_004797531.1| - 0.063 12.9 0.0 0.081 12.5 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Fe_dep_repress PF01325.19 gi|344213211|ref|YP_004797531.1| - 0.079 13.2 0.1 0.12 12.6 0.1 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.12 gi|344213211|ref|YP_004797531.1| - 0.1 12.7 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Sigma70_r4_2 PF08281.12 gi|344213211|ref|YP_004797531.1| - 0.18 11.5 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3995 PF13160.6 gi|344213212|ref|YP_004797532.1| - 0.031 14.7 2.1 0.047 14.0 2.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) Cation_efflux PF01545.21 gi|344213212|ref|YP_004797532.1| - 0.035 13.8 0.9 0.042 13.6 0.9 1.1 1 0 0 1 1 1 0 Cation efflux family DUF5353 PF17304.2 gi|344213212|ref|YP_004797532.1| - 0.41 10.4 3.1 0.62 9.9 2.0 1.9 2 1 0 2 2 2 0 Family of unknown function (DUF5353) SUR7 PF06687.12 gi|344213212|ref|YP_004797532.1| - 0.74 9.4 3.5 0.29 10.7 1.0 1.5 1 1 1 2 2 2 0 SUR7/PalI family DUF202 PF02656.15 gi|344213212|ref|YP_004797532.1| - 1 9.8 7.1 30 5.2 7.1 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Oxidored_molyb PF00174.19 gi|344213213|ref|YP_004797533.1| - 0.0009 18.9 0.0 0.0022 17.6 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Hydrolase_3 PF08282.12 gi|344213216|ref|YP_004797536.1| - 1.5e-09 37.9 0.0 0.0012 18.6 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344213216|ref|YP_004797536.1| - 0.0091 16.4 0.6 5 7.5 0.0 2.8 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|344213216|ref|YP_004797536.1| - 0.14 11.7 0.1 0.66 9.5 0.0 1.9 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase MutL_C PF08676.11 gi|344213218|ref|YP_004797538.1| - 1e-36 125.9 0.0 1.5e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|344213218|ref|YP_004797538.1| - 6.1e-31 106.6 0.0 1e-30 105.8 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|344213218|ref|YP_004797538.1| - 3.2e-12 46.4 0.1 6.5e-12 45.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|344213218|ref|YP_004797538.1| - 9.1e-07 29.4 0.1 1.9e-06 28.4 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SOG2 PF10428.9 gi|344213218|ref|YP_004797538.1| - 0.046 12.9 5.1 0.06 12.5 5.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein SPX PF03105.19 gi|344213218|ref|YP_004797538.1| - 5.7 6.7 13.7 7.8 6.3 13.7 1.2 1 0 0 1 1 1 0 SPX domain PfkB PF00294.24 gi|344213219|ref|YP_004797539.1| - 1.2e-29 103.6 0.2 1.5e-29 103.3 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Oxidored_nitro PF00148.19 gi|344213219|ref|YP_004797539.1| - 0.093 11.4 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase CarboxypepD_reg PF13620.6 gi|344213220|ref|YP_004797540.1| - 4.5e-22 78.1 38.2 5.8e-10 39.3 1.2 4.9 3 2 2 5 5 5 4 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|344213220|ref|YP_004797540.1| - 3.7e-08 33.3 2.7 3.7e-08 33.3 2.7 6.9 5 1 2 7 7 6 3 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|344213220|ref|YP_004797540.1| - 6.7e-08 32.7 31.4 0.0012 19.1 1.0 4.6 3 1 1 4 4 4 3 Invasin, domain 3 PEGA PF08308.11 gi|344213220|ref|YP_004797540.1| - 1.3e-07 31.4 12.9 0.00089 19.1 0.1 4.2 5 0 0 5 5 4 2 PEGA domain DUF4198 PF10670.9 gi|344213220|ref|YP_004797540.1| - 4.6e-07 30.4 8.8 0.15 12.4 0.1 3.6 2 1 0 3 3 3 3 Domain of unknown function (DUF4198) CarbopepD_reg_2 PF13715.6 gi|344213220|ref|YP_004797540.1| - 9.7e-07 28.7 11.5 0.032 14.2 0.1 4.1 2 1 2 4 4 4 2 CarboxypepD_reg-like domain DUF824 PF05688.11 gi|344213220|ref|YP_004797540.1| - 2.9e-06 27.0 10.0 0.025 14.4 0.1 4.5 5 0 0 5 5 5 2 Salmonella repeat of unknown function (DUF824) MG4 PF17789.1 gi|344213220|ref|YP_004797540.1| - 5.9e-06 26.3 10.3 0.041 14.0 0.0 5.0 3 3 2 5 5 5 1 Macroglobulin domain MG4 Ig_3 PF13927.6 gi|344213220|ref|YP_004797540.1| - 2.4e-05 24.9 2.3 0.17 12.5 0.1 4.2 4 1 1 5 5 4 2 Immunoglobulin domain PGF-CTERM PF18204.1 gi|344213220|ref|YP_004797540.1| - 4.1e-05 23.4 4.8 9.8e-05 22.2 4.8 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF4249 PF14054.6 gi|344213220|ref|YP_004797540.1| - 0.00034 20.3 19.1 0.029 14.0 2.0 3.4 1 1 2 3 3 3 2 Domain of unknown function (DUF4249) YtkA PF13115.6 gi|344213220|ref|YP_004797540.1| - 0.0088 16.6 14.1 0.92 10.2 0.1 4.9 3 2 2 5 5 5 2 YtkA-like Big_2 PF02368.18 gi|344213220|ref|YP_004797540.1| - 0.0096 15.8 10.0 0.0096 15.8 10.0 4.8 5 0 0 5 5 4 1 Bacterial Ig-like domain (group 2) BiPBP_C PF06832.12 gi|344213220|ref|YP_004797540.1| - 0.027 14.5 0.2 3.1 7.9 0.0 3.6 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family fn3_3 PF14686.6 gi|344213220|ref|YP_004797540.1| - 0.051 13.4 3.6 0.15 11.9 0.8 2.9 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II DUF4175 PF13779.6 gi|344213220|ref|YP_004797540.1| - 0.21 9.5 3.5 1.1 7.1 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4175) Vg_Tdu PF07545.14 gi|344213220|ref|YP_004797540.1| - 0.52 10.1 1.8 0.95 9.3 0.4 2.1 2 0 0 2 2 2 0 Vestigial/Tondu family DUF5114 PF17141.4 gi|344213220|ref|YP_004797540.1| - 6.8 7.3 11.0 1.3 9.6 3.7 3.2 2 2 1 3 3 3 0 Domain of unknown function (DUF5114) GCV_T PF01571.21 gi|344213221|ref|YP_004797541.1| - 2.1e-39 135.4 0.0 2.9e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|344213221|ref|YP_004797541.1| - 7.7e-13 48.2 0.0 1.6e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain UPF0029 PF01205.19 gi|344213222|ref|YP_004797542.1| - 7.9e-29 100.1 0.0 1.1e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|344213222|ref|YP_004797542.1| - 2.8e-10 39.9 0.5 1.3e-09 37.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|344213222|ref|YP_004797542.1| - 2.4e-05 24.3 0.0 5.6e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus Fer2 PF00111.27 gi|344213223|ref|YP_004797543.1| - 3.5e-07 30.1 0.0 5.4e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|344213223|ref|YP_004797543.1| - 0.0037 17.3 0.4 0.022 14.8 0.4 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain ACT PF01842.25 gi|344213224|ref|YP_004797544.1| - 2.1e-08 33.8 0.8 4.8e-08 32.6 0.2 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|344213224|ref|YP_004797544.1| - 8.5e-05 23.1 0.8 0.001 19.6 0.2 2.5 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|344213224|ref|YP_004797544.1| - 0.002 17.9 0.2 0.0046 16.7 0.1 1.6 2 0 0 2 2 2 1 ACT domain IGPD PF00475.18 gi|344213225|ref|YP_004797545.1| - 4.6e-61 205.3 1.3 4.6e-61 205.3 1.3 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Abhydrolase_1 PF00561.20 gi|344213226|ref|YP_004797546.1| - 1.2e-14 54.5 0.1 4.4e-11 42.9 0.3 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|344213226|ref|YP_004797546.1| - 3.6e-10 40.8 15.3 4.3e-10 40.6 15.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|344213226|ref|YP_004797546.1| - 7.6e-08 31.9 0.3 2.3e-07 30.3 0.3 1.7 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Na_H_Exchanger PF00999.21 gi|344213227|ref|YP_004797547.1| - 1.9e-32 112.5 47.8 2.6e-32 112.1 47.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|344213227|ref|YP_004797547.1| - 4.2e-28 97.9 3.7 1.1e-27 96.6 3.7 1.8 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|344213227|ref|YP_004797547.1| - 3.7e-10 39.5 1.5 1.2e-09 37.9 0.0 2.6 3 0 0 3 3 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|344213227|ref|YP_004797547.1| - 5e-06 26.9 0.7 1.5e-05 25.4 0.7 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|344213227|ref|YP_004797547.1| - 0.00059 19.2 1.4 0.00059 19.2 1.4 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|344213227|ref|YP_004797547.1| - 0.00077 19.1 0.1 0.0014 18.3 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Epimerase PF01370.21 gi|344213227|ref|YP_004797547.1| - 0.0016 17.9 0.4 0.0026 17.3 0.4 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|344213227|ref|YP_004797547.1| - 0.0021 17.3 0.1 0.004 16.5 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_2 PF03446.15 gi|344213227|ref|YP_004797547.1| - 0.0028 17.8 0.5 0.01 16.0 0.4 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|344213227|ref|YP_004797547.1| - 0.0054 16.6 0.3 0.0054 16.6 0.3 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|344213227|ref|YP_004797547.1| - 0.0095 15.8 1.4 0.0095 15.8 1.4 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein ApbA PF02558.16 gi|344213227|ref|YP_004797547.1| - 0.0098 15.5 0.1 0.024 14.3 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|344213227|ref|YP_004797547.1| - 0.02 15.4 0.4 0.063 13.8 0.4 2.0 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_10 PF13460.6 gi|344213227|ref|YP_004797547.1| - 0.056 13.3 10.3 0.2 11.6 7.4 2.5 1 1 1 2 2 2 0 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|344213227|ref|YP_004797547.1| - 0.06 13.6 1.3 0.27 11.5 1.3 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|344213227|ref|YP_004797547.1| - 0.081 12.3 0.0 0.22 10.8 0.0 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain tRNA-synt_2c PF01411.19 gi|344213229|ref|YP_004797549.1| - 1.9e-117 393.1 0.0 2.4e-117 392.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|344213229|ref|YP_004797549.1| - 3.3e-17 63.2 2.4 7.1e-17 62.1 2.4 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|344213229|ref|YP_004797549.1| - 1.3e-13 50.8 0.4 2.5e-13 49.9 0.4 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Arch_flagellin PF01917.16 gi|344213230|ref|YP_004797550.1| - 1.1e-36 126.5 3.8 1.3e-36 126.3 3.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF929 PF06053.11 gi|344213230|ref|YP_004797550.1| - 0.072 12.4 0.2 0.42 9.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF929) Rep_fac_C PF08542.11 gi|344213231|ref|YP_004797551.1| - 1.7e-23 82.8 0.0 3.9e-23 81.7 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|344213231|ref|YP_004797551.1| - 5.9e-20 72.0 0.0 1e-18 68.0 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|344213231|ref|YP_004797551.1| - 2.7e-16 59.8 0.0 6.4e-13 48.8 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|344213231|ref|YP_004797551.1| - 1e-07 31.8 0.0 1.2e-06 28.4 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|344213231|ref|YP_004797551.1| - 4.9e-07 30.3 0.1 0.0005 20.5 0.0 2.7 1 1 1 2 2 2 2 AAA ATPase domain Rad17 PF03215.15 gi|344213231|ref|YP_004797551.1| - 1.5e-06 28.3 0.0 2.4e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|344213231|ref|YP_004797551.1| - 3.3e-06 27.2 0.0 6.4e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|344213231|ref|YP_004797551.1| - 1.5e-05 25.3 0.2 5e-05 23.6 0.2 2.0 1 0 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|344213231|ref|YP_004797551.1| - 3.6e-05 24.1 0.4 0.16 12.2 0.1 2.9 2 1 1 3 3 3 2 AAA domain ResIII PF04851.15 gi|344213231|ref|YP_004797551.1| - 0.00015 21.8 0.0 0.0014 18.6 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|344213231|ref|YP_004797551.1| - 0.00022 21.1 0.0 0.00051 19.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|344213231|ref|YP_004797551.1| - 0.0007 19.4 0.0 0.0063 16.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|344213231|ref|YP_004797551.1| - 0.00094 18.6 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DNA_pol3_delta PF06144.13 gi|344213231|ref|YP_004797551.1| - 0.001 18.9 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Sigma54_activat PF00158.26 gi|344213231|ref|YP_004797551.1| - 0.001 18.8 0.0 0.029 14.1 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_7 PF12775.7 gi|344213231|ref|YP_004797551.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|344213231|ref|YP_004797551.1| - 0.0031 16.8 0.0 0.013 14.7 0.0 1.8 1 1 1 2 2 2 1 TIP49 P-loop domain AAA_5 PF07728.14 gi|344213231|ref|YP_004797551.1| - 0.0046 17.0 0.0 0.039 13.9 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|344213231|ref|YP_004797551.1| - 0.0055 17.3 0.0 0.018 15.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 gi|344213231|ref|YP_004797551.1| - 0.0086 16.2 0.0 0.022 14.9 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|344213231|ref|YP_004797551.1| - 0.012 15.3 0.1 0.039 13.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|344213231|ref|YP_004797551.1| - 0.013 14.6 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|344213231|ref|YP_004797551.1| - 0.022 14.7 0.0 0.6 10.0 0.0 2.3 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|344213231|ref|YP_004797551.1| - 0.022 14.2 0.0 0.1 12.0 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.6 gi|344213231|ref|YP_004797551.1| - 0.031 14.0 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344213231|ref|YP_004797551.1| - 0.043 13.4 0.6 0.27 10.8 0.0 2.2 1 1 1 2 2 2 0 AAA domain DUF3400 PF11880.8 gi|344213231|ref|YP_004797551.1| - 0.048 13.2 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) RNA_helicase PF00910.22 gi|344213231|ref|YP_004797551.1| - 0.05 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.18 gi|344213231|ref|YP_004797551.1| - 0.053 13.2 0.0 0.082 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.14 gi|344213231|ref|YP_004797551.1| - 0.065 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) TrwB_AAD_bind PF10412.9 gi|344213231|ref|YP_004797551.1| - 0.068 12.1 0.0 0.64 8.9 0.0 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.6 gi|344213231|ref|YP_004797551.1| - 0.074 13.4 0.0 0.18 12.1 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|344213231|ref|YP_004797551.1| - 0.076 13.5 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|344213231|ref|YP_004797551.1| - 0.077 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|344213231|ref|YP_004797551.1| - 0.079 12.7 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SNF2_N PF00176.23 gi|344213231|ref|YP_004797551.1| - 0.085 11.6 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF815 PF05673.13 gi|344213231|ref|YP_004797551.1| - 0.088 12.0 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|344213231|ref|YP_004797551.1| - 0.094 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|344213231|ref|YP_004797551.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Acetyltransf_7 PF13508.7 gi|344213232|ref|YP_004797552.1| - 8.7e-10 38.9 0.0 1.1e-09 38.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|344213232|ref|YP_004797552.1| - 6.5e-09 35.8 0.0 7.3e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|344213232|ref|YP_004797552.1| - 1.1e-08 35.3 0.0 1.5e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|344213232|ref|YP_004797552.1| - 0.0016 18.5 0.0 0.0092 16.1 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|344213232|ref|YP_004797552.1| - 0.0049 17.0 0.0 0.0077 16.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|344213232|ref|YP_004797552.1| - 0.01 15.8 0.3 0.22 11.5 0.2 2.6 1 1 1 2 2 2 0 FR47-like protein RDD PF06271.12 gi|344213233|ref|YP_004797553.1| - 3.8e-15 56.3 9.0 1.1e-14 54.8 9.0 1.7 1 1 0 1 1 1 1 RDD family PGM_PMM_I PF02878.16 gi|344213234|ref|YP_004797554.1| - 1.2e-33 115.7 0.0 2.3e-33 114.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|344213234|ref|YP_004797554.1| - 7.5e-25 87.3 0.0 1.3e-24 86.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|344213234|ref|YP_004797554.1| - 2e-23 82.9 0.2 4.9e-23 81.7 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|344213234|ref|YP_004797554.1| - 5.2e-17 61.8 1.3 1.4e-16 60.4 0.2 2.4 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Cu_amine_oxid PF01179.20 gi|344213234|ref|YP_004797554.1| - 0.3 9.9 0.0 0.45 9.4 0.0 1.1 1 0 0 1 1 1 0 Copper amine oxidase, enzyme domain GIY-YIG PF01541.24 gi|344213235|ref|YP_004797555.1| - 2e-16 60.0 0.1 2.3e-16 59.8 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|344213235|ref|YP_004797555.1| - 0.027 15.0 0.1 0.032 14.8 0.1 1.2 1 0 0 1 1 1 0 T5orf172 domain AIRC PF00731.20 gi|344213237|ref|YP_004797557.1| - 4.2e-14 52.4 2.4 4.2e-14 52.4 2.4 1.7 2 0 0 2 2 2 1 AIR carboxylase DUF1931 PF09123.11 gi|344213238|ref|YP_004797558.1| - 0.00024 21.2 0.7 0.00028 21.0 0.7 1.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|344213238|ref|YP_004797558.1| - 0.0004 20.6 0.0 0.00048 20.3 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|344213238|ref|YP_004797558.1| - 0.015 15.7 0.1 0.016 15.6 0.1 1.1 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 DctP PF03480.13 gi|344213238|ref|YP_004797558.1| - 0.034 13.5 0.1 0.036 13.4 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Rib_5-P_isom_A PF06026.14 gi|344213239|ref|YP_004797559.1| - 3.7e-64 215.5 0.0 4.4e-64 215.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|344213239|ref|YP_004797559.1| - 1.8e-05 24.8 0.2 0.00016 21.7 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|344213239|ref|YP_004797559.1| - 0.089 11.9 0.1 0.14 11.2 0.1 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain PGM_PMM_I PF02878.16 gi|344213240|ref|YP_004797560.1| - 8.1e-33 113.1 0.0 1.4e-32 112.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|344213240|ref|YP_004797560.1| - 1.3e-18 67.5 0.2 4.1e-18 65.9 0.2 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|344213240|ref|YP_004797560.1| - 2.2e-16 60.1 0.0 1e-15 57.9 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|344213240|ref|YP_004797560.1| - 4.8e-11 42.7 1.3 1.2e-10 41.4 0.7 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain OpuAC PF04069.12 gi|344213240|ref|YP_004797560.1| - 0.047 13.2 0.3 2.6 7.5 0.0 2.6 3 0 0 3 3 3 0 Substrate binding domain of ABC-type glycine betaine transport system CinA_KH PF18146.1 gi|344213240|ref|YP_004797560.1| - 0.13 12.4 0.1 0.6 10.3 0.1 2.2 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain ATPase PF06745.13 gi|344213241|ref|YP_004797561.1| - 0.013 14.9 0.2 0.016 14.5 0.2 1.1 1 0 0 1 1 1 0 KaiC Type2_restr_D3 PF16902.5 gi|344213241|ref|YP_004797561.1| - 0.039 13.9 0.7 0.069 13.1 0.3 1.7 1 1 0 1 1 1 0 Type-2 restriction enzyme D3 domain DUF2391 PF09622.10 gi|344213242|ref|YP_004797562.1| - 5.8e-05 22.6 6.2 9.2e-05 21.9 6.2 1.3 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) FixP_N PF14715.6 gi|344213242|ref|YP_004797562.1| - 0.33 10.7 2.5 0.28 11.0 0.6 1.8 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP UPRTase PF14681.6 gi|344213243|ref|YP_004797563.1| - 3.4e-47 160.6 0.1 4e-47 160.3 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|344213243|ref|YP_004797563.1| - 2.2e-08 33.8 0.4 3e-08 33.3 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DctM PF06808.12 gi|344213244|ref|YP_004797564.1| - 3.7e-84 283.0 45.9 3.8e-53 180.8 21.4 2.6 2 0 0 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 gi|344213245|ref|YP_004797565.1| - 1.2e-23 83.3 0.1 1.6e-23 82.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1_3 PF16868.5 gi|344213246|ref|YP_004797566.1| - 1.3e-68 231.5 2.2 1.6e-68 231.2 2.2 1.0 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|344213246|ref|YP_004797566.1| - 6.2e-09 35.8 1.3 9.3e-09 35.2 1.3 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|344213246|ref|YP_004797566.1| - 1.1e-08 35.3 1.2 3.4e-08 33.7 0.4 2.1 2 1 0 2 2 2 1 NMT1/THI5 like TAT_signal PF10518.9 gi|344213246|ref|YP_004797566.1| - 4.7e-05 23.1 3.4 0.00011 21.9 3.4 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_2 PF13379.6 gi|344213246|ref|YP_004797566.1| - 0.00057 19.7 0.4 0.026 14.2 0.0 2.2 1 1 0 2 2 2 1 NMT1-like family UCR_Fe-S_N PF10399.9 gi|344213246|ref|YP_004797566.1| - 0.13 11.7 1.0 0.32 10.4 1.0 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal P_gingi_FimA PF06321.11 gi|344213246|ref|YP_004797566.1| - 1.2 9.3 6.6 0.59 10.2 0.2 2.9 2 1 1 3 3 3 0 Major fimbrial subunit protein (FimA) DJ-1_PfpI PF01965.24 gi|344213247|ref|YP_004797567.1| - 1.9e-13 50.6 0.1 7.2e-12 45.4 0.1 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|344213247|ref|YP_004797567.1| - 3.4e-07 30.2 0.0 7.6e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 ThiJ/PfpI family-like Tape_meas_lam_C PF09718.10 gi|344213248|ref|YP_004797568.1| - 0.049 13.8 0.1 0.14 12.3 0.1 1.7 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) PHO4 PF01384.20 gi|344213250|ref|YP_004797570.1| - 4.5e-47 160.7 32.5 4.5e-47 160.7 32.5 1.5 1 1 0 1 1 1 1 Phosphate transporter family DUF1660 PF07874.11 gi|344213251|ref|YP_004797571.1| - 0.12 12.9 0.2 0.23 12.0 0.2 1.5 1 1 0 1 1 1 0 Prophage protein (DUF1660) FAA_hydrolase PF01557.18 gi|344213252|ref|YP_004797572.1| - 0.022 14.4 0.1 0.032 13.9 0.1 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family CstA PF02554.14 gi|344213253|ref|YP_004797573.1| - 1e-104 350.5 19.8 1e-104 350.5 19.8 2.2 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|344213253|ref|YP_004797573.1| - 9.7e-31 106.6 2.5 9.7e-31 106.6 2.5 3.9 4 0 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA ArsA_ATPase PF02374.15 gi|344213254|ref|YP_004797574.1| - 3.7e-65 220.1 0.0 4.5e-65 219.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|344213254|ref|YP_004797574.1| - 4.4e-09 36.5 0.0 1.9e-08 34.4 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|344213254|ref|YP_004797574.1| - 3.5e-08 33.6 0.0 6.9e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|344213254|ref|YP_004797574.1| - 0.00038 20.0 0.0 0.04 13.4 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|344213254|ref|YP_004797574.1| - 0.026 14.4 0.6 0.059 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|344213254|ref|YP_004797574.1| - 0.048 13.1 0.0 0.096 12.1 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.17 gi|344213254|ref|YP_004797574.1| - 0.058 13.1 0.1 0.17 11.6 0.1 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein OB_RNB PF08206.11 gi|344213254|ref|YP_004797574.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Ribonuclease B OB domain Cytochrom_B559a PF00284.20 gi|344213255|ref|YP_004797575.1| - 0.019 14.7 0.1 0.037 13.8 0.1 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.19 gi|344213256|ref|YP_004797576.1| - 2.9e-48 163.8 0.3 3.7e-48 163.5 0.3 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|344213256|ref|YP_004797576.1| - 3.8e-27 94.0 0.0 7.6e-27 93.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain RsgA_GTPase PF03193.16 gi|344213256|ref|YP_004797576.1| - 9.7e-06 25.6 0.1 0.035 14.0 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|344213256|ref|YP_004797576.1| - 0.0015 18.1 0.0 0.38 10.3 0.1 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|344213256|ref|YP_004797576.1| - 0.0058 17.0 1.1 0.02 15.3 0.9 2.2 1 1 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|344213256|ref|YP_004797576.1| - 0.0071 16.3 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TrwB_AAD_bind PF10412.9 gi|344213256|ref|YP_004797576.1| - 0.0075 15.2 0.1 0.012 14.5 0.1 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 gi|344213256|ref|YP_004797576.1| - 0.012 14.9 0.0 0.023 14.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin CbiA PF01656.23 gi|344213256|ref|YP_004797576.1| - 0.012 15.6 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain T2SSE PF00437.20 gi|344213256|ref|YP_004797576.1| - 0.018 14.1 0.2 0.036 13.1 0.2 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|344213256|ref|YP_004797576.1| - 0.074 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|344213256|ref|YP_004797576.1| - 0.088 13.0 0.0 0.26 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|344213256|ref|YP_004797576.1| - 0.096 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|344213256|ref|YP_004797576.1| - 0.12 12.9 0.0 0.28 11.7 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|344213256|ref|YP_004797576.1| - 0.18 12.1 0.0 0.5 10.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain zinc_ribbon_9 PF14369.6 gi|344213257|ref|YP_004797577.1| - 0.0011 19.2 1.4 0.0019 18.4 1.4 1.4 1 0 0 1 1 1 1 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|344213257|ref|YP_004797577.1| - 0.0013 18.6 1.4 0.0015 18.4 1.4 1.2 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.7 gi|344213257|ref|YP_004797577.1| - 0.0054 16.7 0.7 0.0074 16.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|344213257|ref|YP_004797577.1| - 0.012 15.6 1.8 0.017 15.1 1.9 1.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TerY_C PF15616.6 gi|344213257|ref|YP_004797577.1| - 0.019 15.1 0.4 0.021 15.0 0.4 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Zn-ribbon_8 PF09723.10 gi|344213257|ref|YP_004797577.1| - 0.067 13.3 2.6 0.15 12.2 2.6 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|344213257|ref|YP_004797577.1| - 0.085 12.5 0.9 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF983 PF06170.12 gi|344213257|ref|YP_004797577.1| - 0.51 10.8 0.3 0.51 10.8 0.3 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Polyketide_cyc2 PF10604.9 gi|344213258|ref|YP_004797578.1| - 0.00017 21.9 1.7 0.0007 19.9 1.7 1.9 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport CD20 PF04103.15 gi|344213259|ref|YP_004797579.1| - 2.9 8.0 7.8 0.36 10.9 4.0 1.5 2 0 0 2 2 2 0 CD20-like family Cupin_2 PF07883.11 gi|344213261|ref|YP_004797581.1| - 1.4e-13 50.4 0.3 1.7e-13 50.0 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|344213261|ref|YP_004797581.1| - 0.00052 19.9 0.0 0.00066 19.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|344213261|ref|YP_004797581.1| - 0.001 19.0 0.0 0.0011 18.8 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|344213261|ref|YP_004797581.1| - 0.0015 18.2 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|344213261|ref|YP_004797581.1| - 0.0046 16.7 0.0 0.0057 16.4 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain Ppnp PF06865.11 gi|344213261|ref|YP_004797581.1| - 0.02 15.3 0.0 0.024 15.0 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Cupin_1 PF00190.22 gi|344213261|ref|YP_004797581.1| - 0.054 13.1 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF21 PF01595.20 gi|344213262|ref|YP_004797582.1| - 5e-48 163.1 2.1 7.7e-48 162.5 2.1 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|344213262|ref|YP_004797582.1| - 3.7e-20 71.7 2.9 3.7e-20 71.7 2.9 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|344213262|ref|YP_004797582.1| - 9.8e-12 45.1 8.2 1.1e-05 25.8 0.0 3.7 4 0 0 4 4 4 2 CBS domain MFS_1 PF07690.16 gi|344213262|ref|YP_004797582.1| - 0.0022 17.0 0.7 0.0031 16.5 0.7 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Rrp44_S1 PF17215.3 gi|344213262|ref|YP_004797582.1| - 0.03 14.3 1.0 6.6 6.8 0.0 2.8 3 0 0 3 3 3 0 S1 domain PHB_acc_N PF07879.11 gi|344213262|ref|YP_004797582.1| - 0.97 9.6 4.8 1.4 9.1 0.1 2.9 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain GST_N_3 PF13417.6 gi|344213263|ref|YP_004797583.1| - 5.7e-13 49.1 0.0 6.9e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|344213263|ref|YP_004797583.1| - 5e-12 45.9 0.1 7.4e-12 45.3 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|344213263|ref|YP_004797583.1| - 2.1e-10 40.7 0.0 2.5e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|344213263|ref|YP_004797583.1| - 0.0011 19.2 0.0 0.0013 19.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Tom37 PF10568.9 gi|344213263|ref|YP_004797583.1| - 0.099 12.9 0.0 0.12 12.7 0.0 1.2 1 0 0 1 1 1 0 Outer mitochondrial membrane transport complex protein DUF836 PF05768.14 gi|344213263|ref|YP_004797583.1| - 0.12 12.8 0.0 0.17 12.3 0.0 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) SapB_1 PF05184.15 gi|344213263|ref|YP_004797583.1| - 0.15 12.2 0.0 0.62 10.1 0.1 2.0 3 0 0 3 3 3 0 Saposin-like type B, region 1 AhpC-TSA PF00578.21 gi|344213264|ref|YP_004797584.1| - 1.3e-15 57.4 0.0 1.6e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|344213264|ref|YP_004797584.1| - 2.4e-06 27.3 0.0 8.6e-06 25.5 0.0 1.8 1 1 0 1 1 1 1 Redoxin Sua5_yciO_yrdC PF01300.18 gi|344213265|ref|YP_004797585.1| - 1.5e-49 167.9 0.0 1.8e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Img2 PF05046.14 gi|344213265|ref|YP_004797585.1| - 0.047 14.0 0.0 0.074 13.3 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) CCG PF02754.16 gi|344213268|ref|YP_004797588.1| - 1.6e-17 63.5 0.0 7.6e-12 45.3 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4 PF00037.27 gi|344213268|ref|YP_004797588.1| - 4.2e-10 39.0 11.2 4.5e-05 23.1 1.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|344213268|ref|YP_004797588.1| - 9.7e-10 38.4 10.9 1e-07 32.0 10.7 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344213268|ref|YP_004797588.1| - 2.1e-09 37.4 7.4 2.7e-09 37.0 5.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|344213268|ref|YP_004797588.1| - 2.6e-09 37.4 4.4 2.6e-09 37.4 4.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344213268|ref|YP_004797588.1| - 4.2e-08 33.7 8.9 4.2e-08 33.7 8.9 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344213268|ref|YP_004797588.1| - 6.4e-07 29.1 12.2 0.00048 20.0 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|344213268|ref|YP_004797588.1| - 3.4e-05 24.7 11.4 0.00029 21.7 10.2 2.6 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|344213268|ref|YP_004797588.1| - 8.1e-05 22.5 21.5 0.001 19.0 4.1 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|344213268|ref|YP_004797588.1| - 0.00013 22.4 9.5 0.00013 22.4 9.5 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344213268|ref|YP_004797588.1| - 0.0002 21.4 12.1 0.015 15.4 0.5 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Nitrate_red_gam PF02665.14 gi|344213268|ref|YP_004797588.1| - 0.0004 20.0 0.6 0.00074 19.1 0.6 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_4 PF12800.7 gi|344213268|ref|YP_004797588.1| - 0.0034 17.8 18.6 0.0063 16.9 1.5 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|344213268|ref|YP_004797588.1| - 0.0096 16.7 7.8 0.11 13.4 0.5 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|344213268|ref|YP_004797588.1| - 0.098 13.4 8.1 0.43 11.4 0.3 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|344213268|ref|YP_004797588.1| - 0.33 12.0 24.6 0.33 12.0 5.1 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|344213268|ref|YP_004797588.1| - 0.4 10.9 10.7 2.4 8.4 1.9 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|344213268|ref|YP_004797588.1| - 3.8 8.1 18.9 2.8 8.6 3.1 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain of Ferredoxin I TrkA_N PF02254.18 gi|344213269|ref|YP_004797589.1| - 2.5e-27 95.4 3.0 3.5e-27 95.0 3.0 1.2 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|344213269|ref|YP_004797589.1| - 1.5e-06 28.5 0.4 2.4e-06 27.9 0.4 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|344213269|ref|YP_004797589.1| - 0.00045 20.5 0.6 0.00078 19.7 0.6 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|344213269|ref|YP_004797589.1| - 0.0017 18.3 0.8 0.0027 17.6 0.8 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|344213269|ref|YP_004797589.1| - 0.008 15.5 1.7 0.014 14.7 1.4 1.4 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.12 gi|344213269|ref|YP_004797589.1| - 0.047 13.3 0.2 0.078 12.5 0.2 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|344213269|ref|YP_004797589.1| - 0.052 13.7 0.2 0.078 13.1 0.2 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|344213269|ref|YP_004797589.1| - 0.059 12.7 0.1 0.086 12.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|344213269|ref|YP_004797589.1| - 0.082 13.0 1.6 0.2 11.7 0.6 1.9 1 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MoCF_biosynth PF00994.24 gi|344213271|ref|YP_004797591.1| - 3.4e-31 107.8 0.7 1.2e-30 106.0 0.2 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain DUF218 PF02698.17 gi|344213271|ref|YP_004797591.1| - 0.0057 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 DUF218 domain ALAD PF00490.21 gi|344213272|ref|YP_004797592.1| - 1e-140 468.5 0.0 1.1e-140 468.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF4129 PF13559.6 gi|344213273|ref|YP_004797593.1| - 4.8e-06 26.7 6.6 4.8e-06 26.7 6.6 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4129) DUF58 PF01882.18 gi|344213275|ref|YP_004797595.1| - 5.2e-18 65.1 0.6 1.2e-17 63.9 0.6 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|344213275|ref|YP_004797595.1| - 1.6e-09 37.9 0.6 1.6e-09 37.9 0.6 3.1 3 1 0 3 3 3 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|344213275|ref|YP_004797595.1| - 0.00011 22.4 2.2 0.00052 20.2 0.2 2.6 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Glyco_transf_4 PF13439.6 gi|344213275|ref|YP_004797595.1| - 0.00053 20.0 0.9 0.39 10.7 0.2 2.6 2 0 0 2 2 2 2 Glycosyltransferase Family 4 CARDB PF07705.11 gi|344213275|ref|YP_004797595.1| - 0.0019 18.4 0.1 0.0052 17.0 0.0 1.7 2 0 0 2 2 2 1 CARDB TRAP_beta PF05753.14 gi|344213275|ref|YP_004797595.1| - 0.11 11.8 0.0 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Translocon-associated protein beta (TRAPB) DUF3917 PF13055.6 gi|344213276|ref|YP_004797596.1| - 0.85 10.1 6.0 1.5 9.3 5.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3917) PAS_4 PF08448.10 gi|344213277|ref|YP_004797597.1| - 2.7e-14 53.3 0.7 6.4e-06 26.4 0.1 2.7 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.26 gi|344213277|ref|YP_004797597.1| - 3.4e-13 50.1 0.0 6.2e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|344213277|ref|YP_004797597.1| - 1.9e-12 47.2 0.0 5.4e-06 26.4 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|344213277|ref|YP_004797597.1| - 7.3e-10 39.0 0.0 0.00035 20.8 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|344213277|ref|YP_004797597.1| - 8.7e-10 38.8 0.0 0.00027 21.2 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|344213277|ref|YP_004797597.1| - 5.9e-08 32.6 0.2 6e-05 23.0 0.1 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.6 gi|344213277|ref|YP_004797597.1| - 8.3e-05 22.5 0.2 0.00028 20.9 0.1 2.0 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|344213277|ref|YP_004797597.1| - 0.051 13.6 2.2 0.069 13.2 1.1 1.8 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|344213277|ref|YP_004797597.1| - 0.21 11.1 0.1 0.21 11.1 0.1 2.0 3 0 0 3 3 3 0 Archaeal 4TM region of histidine kinase MCPsignal PF00015.21 gi|344213278|ref|YP_004797598.1| - 1.9e-34 119.0 47.9 1.5e-33 116.1 27.1 4.1 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 gi|344213278|ref|YP_004797598.1| - 0.00053 20.0 16.9 0.075 13.1 0.6 4.5 2 1 3 5 5 4 2 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|344213278|ref|YP_004797598.1| - 0.0019 18.5 13.1 2.1 8.7 0.0 5.0 3 2 0 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad2 PF08654.10 gi|344213278|ref|YP_004797598.1| - 0.0056 17.1 16.2 1.2 9.6 2.2 3.9 2 1 2 4 4 3 1 DASH complex subunit Dad2 DUF948 PF06103.11 gi|344213278|ref|YP_004797598.1| - 0.0078 16.4 22.6 0.041 14.1 4.2 4.2 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.10 gi|344213278|ref|YP_004797598.1| - 0.013 15.7 4.6 4.2 7.6 0.3 3.3 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family EcoEI_R_C PF08463.10 gi|344213278|ref|YP_004797598.1| - 0.017 15.3 0.1 0.063 13.4 0.1 1.9 2 0 0 2 2 1 0 EcoEI R protein C-terminal HMMR_N PF15905.5 gi|344213278|ref|YP_004797598.1| - 0.02 14.4 7.4 0.18 11.3 1.3 2.4 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal RmuC PF02646.16 gi|344213278|ref|YP_004797598.1| - 0.034 13.3 9.5 0.6 9.2 0.8 3.4 2 2 2 4 4 4 0 RmuC family NPV_P10 PF05531.12 gi|344213278|ref|YP_004797598.1| - 0.076 13.5 19.6 0.76 10.3 1.0 4.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein IFT57 PF10498.9 gi|344213278|ref|YP_004797598.1| - 0.12 11.3 6.5 0.62 9.0 0.5 2.5 1 1 1 3 3 3 0 Intra-flagellar transport protein 57 AAA_13 PF13166.6 gi|344213278|ref|YP_004797598.1| - 0.15 10.7 11.5 0.22 10.1 11.5 1.3 1 0 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|344213278|ref|YP_004797598.1| - 0.18 10.9 0.1 0.33 10.0 0.1 1.3 1 0 0 1 1 1 0 PAXNEB protein RE_LlaMI PF09562.10 gi|344213278|ref|YP_004797598.1| - 0.22 11.1 0.0 0.34 10.4 0.0 1.2 1 0 0 1 1 1 0 LlaMI restriction endonuclease Spc7 PF08317.11 gi|344213278|ref|YP_004797598.1| - 0.27 10.1 17.6 1.6 7.5 3.8 2.4 1 1 0 2 2 2 0 Spc7 kinetochore protein Laminin_II PF06009.12 gi|344213278|ref|YP_004797598.1| - 0.34 10.9 27.8 0.64 10.0 0.4 4.3 2 2 1 3 3 3 0 Laminin Domain II Sec34 PF04136.15 gi|344213278|ref|YP_004797598.1| - 0.4 10.6 6.5 4.6 7.1 0.1 3.4 2 2 2 4 4 4 0 Sec34-like family TMPIT PF07851.13 gi|344213278|ref|YP_004797598.1| - 0.4 9.9 2.4 4.2 6.5 0.1 2.4 1 1 0 2 2 2 0 TMPIT-like protein APG17 PF04108.12 gi|344213278|ref|YP_004797598.1| - 0.47 9.5 17.7 1.2 8.1 5.4 2.3 1 1 1 2 2 2 0 Autophagy protein Apg17 Nup54 PF13874.6 gi|344213278|ref|YP_004797598.1| - 0.67 10.1 10.6 2.9 8.0 2.4 3.2 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 MscS_porin PF12795.7 gi|344213278|ref|YP_004797598.1| - 0.95 9.0 29.5 2.3 7.7 10.5 2.6 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain Seryl_tRNA_N PF02403.22 gi|344213278|ref|YP_004797598.1| - 1.1 9.6 17.4 7.1 6.9 1.0 4.4 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF489 PF04356.12 gi|344213278|ref|YP_004797598.1| - 1.6 8.7 5.3 0.57 10.2 0.5 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF489) DUF3584 PF12128.8 gi|344213278|ref|YP_004797598.1| - 2.1 5.7 23.5 0.019 12.5 9.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF16 PF01519.16 gi|344213278|ref|YP_004797598.1| - 2.3 8.8 7.5 18 5.9 0.5 3.7 2 2 1 3 3 3 0 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|344213278|ref|YP_004797598.1| - 2.4 8.2 21.0 0.5 10.4 4.5 3.6 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus YkyA PF10368.9 gi|344213278|ref|YP_004797598.1| - 2.8 7.6 15.5 3.7 7.2 0.8 3.5 2 1 1 4 4 3 0 Putative cell-wall binding lipoprotein Jnk-SapK_ap_N PF09744.9 gi|344213278|ref|YP_004797598.1| - 4 7.6 12.9 5.7 7.1 1.0 3.3 1 1 0 3 3 3 0 JNK_SAPK-associated protein-1 CorA PF01544.18 gi|344213278|ref|YP_004797598.1| - 4.1 6.6 11.9 4.8 6.4 2.6 2.5 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein COG2 PF06148.11 gi|344213278|ref|YP_004797598.1| - 4.3 7.4 12.0 15 5.7 0.8 3.7 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Cep57_MT_bd PF06657.13 gi|344213278|ref|YP_004797598.1| - 5.2 7.6 5.5 14 6.3 0.2 3.7 4 1 1 5 5 3 0 Centrosome microtubule-binding domain of Cep57 ZapB PF06005.12 gi|344213278|ref|YP_004797598.1| - 6.5 7.3 5.9 89 3.6 0.3 3.5 2 1 1 3 3 3 0 Cell division protein ZapB Not3 PF04065.15 gi|344213278|ref|YP_004797598.1| - 7.2 6.0 9.1 6.9 6.0 1.6 2.3 1 1 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component TBCC_N PF16752.5 gi|344213278|ref|YP_004797598.1| - 7.2 7.1 19.3 0.59 10.6 1.1 4.2 1 1 2 4 4 4 0 Tubulin-specific chaperone C N-terminal domain DUF3450 PF11932.8 gi|344213278|ref|YP_004797598.1| - 7.8 5.7 27.6 1.2 8.3 1.4 3.7 2 1 2 4 4 4 0 Protein of unknown function (DUF3450) Fzo_mitofusin PF04799.13 gi|344213278|ref|YP_004797598.1| - 7.8 6.0 7.5 34 4.0 0.2 3.6 2 2 2 4 4 4 0 fzo-like conserved region Mod_r PF07200.13 gi|344213278|ref|YP_004797598.1| - 7.9 6.6 8.5 16 5.6 0.7 3.0 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Lipoprotein_7 PF01540.16 gi|344213278|ref|YP_004797598.1| - 9.2 5.4 14.2 1.2 8.3 3.9 2.8 1 1 2 3 3 3 0 Adhesin lipoprotein SCO1-SenC PF02630.14 gi|344213278|ref|YP_004797598.1| - 9.6 6.1 7.3 2.2 8.2 1.1 2.7 2 1 1 3 3 3 0 SCO1/SenC Ammonium_transp PF00909.21 gi|344213279|ref|YP_004797599.1| - 7.8e-96 321.2 43.7 9e-96 321.0 43.7 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|344213279|ref|YP_004797599.1| - 0.021 14.7 0.3 0.021 14.7 0.3 2.8 3 0 0 3 3 3 0 Photosystem II protein Y (PsbY) P-II PF00543.22 gi|344213280|ref|YP_004797600.1| - 8.9e-33 112.9 0.2 1e-32 112.7 0.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II HisG_C PF08029.11 gi|344213280|ref|YP_004797600.1| - 0.096 12.8 0.8 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 HisG, C-terminal domain HTH_24 PF13412.6 gi|344213281|ref|YP_004797601.1| - 4.7e-13 48.5 0.0 1.1e-12 47.3 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344213281|ref|YP_004797601.1| - 6.4e-12 45.1 2.0 1.1e-11 44.4 2.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|344213281|ref|YP_004797601.1| - 3.8e-11 42.8 0.2 6.9e-11 42.0 0.2 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|344213281|ref|YP_004797601.1| - 1.8e-05 24.5 1.2 3.1e-05 23.8 1.2 1.5 1 1 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|344213281|ref|YP_004797601.1| - 0.00038 19.8 0.3 0.00067 19.0 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|344213281|ref|YP_004797601.1| - 0.00046 20.6 0.2 0.0094 16.4 0.1 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|344213281|ref|YP_004797601.1| - 0.00052 19.9 0.0 0.00091 19.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_50 PF18024.1 gi|344213281|ref|YP_004797601.1| - 0.0018 17.8 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344213281|ref|YP_004797601.1| - 0.002 17.9 0.0 0.0036 17.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|344213281|ref|YP_004797601.1| - 0.0021 18.1 0.0 0.0034 17.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|344213281|ref|YP_004797601.1| - 0.004 17.1 0.0 0.0088 16.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|344213281|ref|YP_004797601.1| - 0.0061 16.6 0.1 0.011 15.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344213281|ref|YP_004797601.1| - 0.0096 15.8 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|344213281|ref|YP_004797601.1| - 0.023 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 gi|344213281|ref|YP_004797601.1| - 0.027 14.2 0.0 0.066 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|344213281|ref|YP_004797601.1| - 0.037 14.2 0.1 0.096 12.8 0.0 1.6 2 0 0 2 2 2 0 Trp repressor protein Crp PF00325.20 gi|344213281|ref|YP_004797601.1| - 0.076 12.7 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_11 PF08279.12 gi|344213281|ref|YP_004797601.1| - 0.086 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH domain LacI PF00356.21 gi|344213281|ref|YP_004797601.1| - 0.099 12.5 0.4 0.27 11.0 0.4 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Peripla_BP_6 PF13458.6 gi|344213282|ref|YP_004797602.1| - 5.7e-53 180.8 7.0 7.3e-53 180.4 7.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344213282|ref|YP_004797602.1| - 8.2e-21 74.4 0.9 1.9e-20 73.2 0.9 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|344213282|ref|YP_004797602.1| - 0.0033 16.6 0.0 0.0062 15.7 0.0 1.4 1 0 0 1 1 1 1 Receptor family ligand binding region ParBc PF02195.18 gi|344213282|ref|YP_004797602.1| - 0.17 12.2 0.0 0.39 11.0 0.0 1.5 1 0 0 1 1 1 0 ParB-like nuclease domain CheC PF04509.12 gi|344213283|ref|YP_004797603.1| - 4.5e-12 45.7 0.6 8.1e-12 44.9 0.6 1.5 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|344213283|ref|YP_004797603.1| - 0.00059 20.0 0.2 0.00089 19.4 0.2 1.3 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX FliM PF02154.15 gi|344213283|ref|YP_004797603.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Flagellar motor switch protein FliM Peripla_BP_6 PF13458.6 gi|344213284|ref|YP_004797604.1| - 2.4e-62 211.6 4.9 3.2e-62 211.2 4.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344213284|ref|YP_004797604.1| - 1.3e-19 70.4 2.3 9.5e-19 67.6 2.3 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|344213284|ref|YP_004797604.1| - 6e-07 28.9 0.1 7.9e-07 28.5 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region RNA_pol_Rpb2_45 PF10385.9 gi|344213284|ref|YP_004797604.1| - 0.091 13.0 0.1 0.25 11.6 0.1 1.8 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain NIR_SIR PF01077.22 gi|344213285|ref|YP_004797605.1| - 9.2e-46 155.2 0.1 1.4e-30 105.9 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|344213285|ref|YP_004797605.1| - 7.7e-37 125.0 0.0 8.6e-17 60.8 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|344213285|ref|YP_004797605.1| - 0.00068 19.7 0.1 0.015 15.4 0.0 2.4 2 0 0 2 2 2 1 DGC domain MFS_1 PF07690.16 gi|344213286|ref|YP_004797606.1| - 1.9e-30 106.0 45.2 1.9e-30 106.0 45.2 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344213286|ref|YP_004797606.1| - 0.00022 20.2 11.3 0.071 12.0 11.3 3.3 1 1 0 1 1 1 1 MFS_1 like family Molybdopterin PF00384.22 gi|344213287|ref|YP_004797607.1| - 3.8e-57 194.2 0.0 4.9e-57 193.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344213287|ref|YP_004797607.1| - 3.8e-19 68.7 0.0 8.9e-19 67.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|344213287|ref|YP_004797607.1| - 9.9e-05 22.2 0.6 0.00027 20.9 0.6 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Aminotran_3 PF00202.21 gi|344213288|ref|YP_004797608.1| - 6.7e-69 232.5 0.0 8.8e-69 232.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|344213288|ref|YP_004797608.1| - 0.002 17.4 0.0 0.0024 17.1 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Neuregulin PF02158.15 gi|344213288|ref|YP_004797608.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Neuregulin intracellular region PAS_9 PF13426.7 gi|344213290|ref|YP_004797610.1| - 1.8e-26 92.4 0.0 2.7e-12 46.9 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|344213290|ref|YP_004797610.1| - 3.2e-24 85.1 0.0 1e-10 41.6 0.0 2.5 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|344213290|ref|YP_004797610.1| - 1.4e-23 83.2 0.0 3e-23 82.1 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|344213290|ref|YP_004797610.1| - 7.9e-20 71.2 0.3 1.1e-09 38.5 0.1 2.4 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.12 gi|344213290|ref|YP_004797610.1| - 6.9e-16 58.3 0.2 1.2e-07 31.9 0.0 2.7 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.7 gi|344213290|ref|YP_004797610.1| - 1.9e-14 53.3 0.4 1.2e-07 31.5 0.0 3.1 4 0 0 4 4 4 2 PAS domain OKR_DC_1_N PF03709.15 gi|344213290|ref|YP_004797610.1| - 7.2e-06 26.2 0.1 1.3e-05 25.4 0.1 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.7 gi|344213290|ref|YP_004797610.1| - 0.00015 21.9 0.0 0.012 15.8 0.0 3.0 2 1 0 2 2 2 1 PAS fold MEKHLA PF08670.11 gi|344213290|ref|YP_004797610.1| - 0.0012 18.8 0.0 1.7 8.5 0.0 2.3 2 0 0 2 2 2 2 MEKHLA domain Pribosyltran_N PF13793.6 gi|344213291|ref|YP_004797611.1| - 7.9e-24 83.8 0.0 1.1e-22 80.2 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|344213291|ref|YP_004797611.1| - 4e-12 45.9 0.1 1.3e-11 44.3 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|344213291|ref|YP_004797611.1| - 3.9e-07 30.3 0.9 1.4e-06 28.5 0.3 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|344213291|ref|YP_004797611.1| - 0.00031 20.3 0.1 0.00062 19.3 0.1 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|344213291|ref|YP_004797611.1| - 0.0029 17.1 0.8 0.088 12.3 0.1 2.4 2 1 1 3 3 3 1 Phosphoribosyl transferase FIST_C PF10442.9 gi|344213291|ref|YP_004797611.1| - 0.008 16.2 0.0 0.093 12.7 0.0 2.2 2 0 0 2 2 2 1 FIST C domain RIO1 PF01163.22 gi|344213291|ref|YP_004797611.1| - 0.16 11.5 0.0 0.43 10.1 0.0 1.6 2 0 0 2 2 2 0 RIO1 family tRNA-synt_1 PF00133.22 gi|344213292|ref|YP_004797612.1| - 7.7e-172 572.7 3.0 1.1e-171 572.1 3.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|344213292|ref|YP_004797612.1| - 1e-29 103.5 0.0 2e-29 102.6 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|344213292|ref|YP_004797612.1| - 2e-26 92.7 0.8 2.7e-10 39.6 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|344213292|ref|YP_004797612.1| - 0.00043 19.7 0.0 0.14 11.5 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|344213292|ref|YP_004797612.1| - 0.014 14.9 0.0 0.057 12.9 0.0 1.8 1 1 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 PSII_Pbs27 PF13326.6 gi|344213292|ref|YP_004797612.1| - 0.1 12.9 0.3 7.6 6.8 0.0 2.5 2 0 0 2 2 2 0 Photosystem II Pbs27 AF0941-like PF14591.6 gi|344213292|ref|YP_004797612.1| - 1 9.9 4.4 0.92 10.1 0.2 2.8 2 0 0 2 2 2 0 AF0941-like UDG PF03167.19 gi|344213293|ref|YP_004797613.1| - 4e-36 124.3 0.0 5.3e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HIT PF01230.23 gi|344213294|ref|YP_004797614.1| - 1.5e-26 93.0 0.0 5.1e-26 91.3 0.0 1.7 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|344213294|ref|YP_004797614.1| - 1.8e-13 51.0 0.0 2.2e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|344213294|ref|YP_004797614.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 AAA_31 PF13614.6 gi|344213295|ref|YP_004797615.1| - 4.8e-09 36.4 0.0 6.4e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|344213295|ref|YP_004797615.1| - 1.8e-07 30.9 0.7 9.6e-07 28.5 0.7 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ CbiA PF01656.23 gi|344213295|ref|YP_004797615.1| - 4.1e-05 23.6 0.0 7.4e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|344213295|ref|YP_004797615.1| - 6.2e-05 22.4 0.8 0.037 13.3 0.2 2.1 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|344213295|ref|YP_004797615.1| - 0.0023 17.5 0.1 0.17 11.3 0.4 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Usp PF00582.26 gi|344213296|ref|YP_004797616.1| - 4.7e-06 27.2 1.1 2.8e-05 24.6 1.2 1.8 1 1 0 1 1 1 1 Universal stress protein family RNase_H_2 PF13482.6 gi|344213297|ref|YP_004797617.1| - 1.7e-34 119.2 0.0 2.3e-34 118.8 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|344213297|ref|YP_004797617.1| - 0.0025 17.5 0.1 0.0051 16.5 0.1 1.5 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo2 PF10108.9 gi|344213297|ref|YP_004797617.1| - 0.059 13.0 0.1 0.52 10.0 0.0 2.2 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_T PF00929.24 gi|344213297|ref|YP_004797617.1| - 0.081 13.5 0.4 17 5.9 0.0 2.3 1 1 1 2 2 2 0 Exonuclease DUF1404 PF07185.11 gi|344213298|ref|YP_004797618.1| - 0.09 12.5 1.4 0.1 12.3 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1404) Zn-ribbon_8 PF09723.10 gi|344213299|ref|YP_004797619.1| - 0.029 14.5 1.4 3.1 8.0 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-WRNIP1_ubi PF18279.1 gi|344213299|ref|YP_004797619.1| - 0.059 14.0 1.3 0.2 12.4 0.1 2.0 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain Rubredoxin_2 PF18073.1 gi|344213299|ref|YP_004797619.1| - 0.13 12.0 1.3 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|344213299|ref|YP_004797619.1| - 0.15 12.2 5.1 0.78 9.9 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|344213299|ref|YP_004797619.1| - 0.18 11.7 4.2 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Auto_anti-p27 PF06677.12 gi|344213299|ref|YP_004797619.1| - 0.31 11.2 2.6 4 7.7 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|344213299|ref|YP_004797619.1| - 0.87 9.6 3.8 8.9 6.4 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rhomboid PF01694.22 gi|344213300|ref|YP_004797620.1| - 9.8e-23 80.8 13.7 1.4e-22 80.3 13.7 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|344213300|ref|YP_004797620.1| - 1.2e-05 25.7 0.4 3.7e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DUF123 PF01986.16 gi|344213301|ref|YP_004797621.1| - 1.4e-30 105.7 0.0 1.9e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA-synt_1_2 PF13603.6 gi|344213302|ref|YP_004797622.1| - 4.3e-55 186.1 0.0 6.8e-55 185.5 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1 PF00133.22 gi|344213302|ref|YP_004797622.1| - 1.2e-54 185.6 0.0 8.6e-32 110.1 0.0 5.0 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|344213302|ref|YP_004797622.1| - 5.3e-27 94.6 0.0 1.6e-19 70.0 0.0 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|344213302|ref|YP_004797622.1| - 2e-12 47.3 0.0 4.9e-12 46.1 0.0 1.6 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA zf-ribbon_3 PF13248.6 gi|344213302|ref|YP_004797622.1| - 0.003 16.9 7.2 4.3 6.9 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|344213302|ref|YP_004797622.1| - 0.0088 16.1 1.8 0.25 11.4 0.0 2.7 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|344213302|ref|YP_004797622.1| - 0.021 14.8 2.6 2 8.5 0.2 2.6 2 1 0 2 2 2 0 Double zinc ribbon tRNA-synt_1f PF01921.18 gi|344213302|ref|YP_004797622.1| - 0.021 13.7 0.0 0.075 11.9 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.12 gi|344213302|ref|YP_004797622.1| - 0.03 13.8 8.8 1.6 8.3 0.1 4.2 4 0 0 4 4 4 0 TFIIB zinc-binding IBR PF01485.21 gi|344213302|ref|YP_004797622.1| - 0.1 12.8 0.9 1.2 9.4 0.0 2.5 2 1 0 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_15 PF17032.5 gi|344213302|ref|YP_004797622.1| - 0.17 12.6 0.0 21 5.9 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon family Zn-ribbon_8 PF09723.10 gi|344213302|ref|YP_004797622.1| - 0.35 11.0 7.2 0.36 11.0 0.1 3.4 4 0 0 4 4 4 0 Zinc ribbon domain BPD_transp_2 PF02653.16 gi|344213303|ref|YP_004797623.1| - 5e-35 121.0 33.7 5e-35 121.0 33.7 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|344213304|ref|YP_004797624.1| - 4.5e-45 153.9 32.9 4.5e-45 153.9 32.9 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344213305|ref|YP_004797625.1| - 4.8e-49 166.4 0.0 1e-28 100.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|344213305|ref|YP_004797625.1| - 1e-09 38.6 0.0 0.00024 21.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344213305|ref|YP_004797625.1| - 2.4e-05 24.0 0.5 0.027 14.2 0.0 2.7 3 0 0 3 3 3 2 P-loop containing region of AAA domain Bac_DnaA PF00308.18 gi|344213305|ref|YP_004797625.1| - 4.5e-05 23.4 1.0 0.00089 19.2 0.0 2.7 3 0 0 3 3 3 1 Bacterial dnaA protein AAA_15 PF13175.6 gi|344213305|ref|YP_004797625.1| - 0.00023 21.0 0.0 0.44 10.2 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|344213305|ref|YP_004797625.1| - 0.00024 20.9 0.3 0.031 14.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|344213305|ref|YP_004797625.1| - 0.0012 18.4 0.1 3.3 7.1 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|344213305|ref|YP_004797625.1| - 0.0023 18.5 0.0 0.0038 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344213305|ref|YP_004797625.1| - 0.0038 17.1 0.1 0.04 13.8 0.0 2.4 3 0 0 3 3 3 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|344213305|ref|YP_004797625.1| - 0.016 15.3 0.0 0.2 11.7 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|344213305|ref|YP_004797625.1| - 0.04 14.2 1.8 1.1 9.5 0.4 3.0 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|344213305|ref|YP_004797625.1| - 0.045 13.5 0.5 1.3 8.8 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|344213305|ref|YP_004797625.1| - 0.067 12.8 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Bmp PF02608.14 gi|344213306|ref|YP_004797626.1| - 3.4e-56 190.4 8.3 5.9e-56 189.7 8.3 1.3 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like PHO4 PF01384.20 gi|344213307|ref|YP_004797627.1| - 3e-41 141.6 31.5 4.1e-41 141.1 31.5 1.2 1 0 0 1 1 1 1 Phosphate transporter family L6_membrane PF05805.12 gi|344213307|ref|YP_004797627.1| - 0.091 12.3 4.6 0.11 12.0 0.5 2.6 2 0 0 2 2 2 0 L6 membrane protein Usp PF00582.26 gi|344213308|ref|YP_004797628.1| - 1.2e-27 97.1 2.6 1.4e-27 96.9 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family baeRF_family10 PF18854.1 gi|344213308|ref|YP_004797628.1| - 0.004 17.4 1.7 0.0065 16.7 1.7 1.3 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 MRFAP1 PF15155.6 gi|344213308|ref|YP_004797628.1| - 0.009 16.5 0.3 0.015 15.8 0.3 1.4 1 0 0 1 1 1 1 MORF4 family-associated protein1 IMP_cyclohyd PF07826.11 gi|344213309|ref|YP_004797629.1| - 6.9e-65 218.2 0.0 8e-65 218.0 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.7 gi|344213310|ref|YP_004797630.1| - 1.3e-25 90.5 0.9 1.6e-25 90.2 0.9 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344213310|ref|YP_004797630.1| - 3.3e-09 37.5 3.2 7.3e-09 36.4 3.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|344213310|ref|YP_004797630.1| - 0.057 12.7 0.1 0.12 11.7 0.1 1.5 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Fer2 PF00111.27 gi|344213311|ref|YP_004797631.1| - 1.7e-12 47.1 0.0 3.4e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.31 gi|344213311|ref|YP_004797631.1| - 8e-11 41.9 0.0 1.3e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|344213311|ref|YP_004797631.1| - 0.019 14.9 0.0 0.078 12.9 0.0 1.9 2 0 0 2 2 2 0 A repeated domain in UCH-protein AA_kinase PF00696.28 gi|344213312|ref|YP_004797632.1| - 4.1e-46 157.5 2.6 6.3e-46 156.9 2.6 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|344213312|ref|YP_004797632.1| - 4.9e-17 61.5 0.1 8.6e-08 31.9 0.1 2.8 3 0 0 3 3 3 2 ACT domain ACT PF01842.25 gi|344213312|ref|YP_004797632.1| - 9.3e-06 25.3 0.1 5.5e-05 22.9 0.1 2.4 2 0 0 2 2 2 1 ACT domain DUF2007 PF09413.10 gi|344213312|ref|YP_004797632.1| - 3.6e-05 23.8 0.4 3.4 7.9 0.0 3.8 3 0 0 3 3 3 3 Putative prokaryotic signal transducing protein Acetyltransf_10 PF13673.7 gi|344213313|ref|YP_004797633.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Phenol_hyd_sub PF06099.11 gi|344213313|ref|YP_004797633.1| - 0.16 12.0 0.4 10 6.2 0.1 2.3 2 0 0 2 2 2 0 Phenol hydroxylase subunit YndJ PF14158.6 gi|344213314|ref|YP_004797634.1| - 1.6e-72 243.9 33.9 1.6e-72 243.9 33.9 1.8 1 1 1 2 2 2 2 YndJ-like protein DUF4166 PF13761.6 gi|344213315|ref|YP_004797635.1| - 5.6e-45 153.3 0.1 6.4e-45 153.1 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) PALP PF00291.25 gi|344213316|ref|YP_004797636.1| - 1.3e-70 238.2 3.1 1.7e-70 237.8 3.1 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme RNA_pol_Rpb2_4 PF04566.13 gi|344213316|ref|YP_004797636.1| - 0.14 12.5 0.0 1.7 9.0 0.0 2.5 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 TrmB PF01978.19 gi|344213317|ref|YP_004797637.1| - 2.1e-14 53.1 0.0 2.7e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|344213317|ref|YP_004797637.1| - 1.6e-06 27.9 0.3 2.7e-06 27.1 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344213317|ref|YP_004797637.1| - 2e-05 24.5 0.1 3e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|344213317|ref|YP_004797637.1| - 2.3e-05 23.8 0.1 4.5e-05 22.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344213317|ref|YP_004797637.1| - 7.9e-05 22.4 1.9 0.00014 21.6 0.4 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344213317|ref|YP_004797637.1| - 0.00012 21.9 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|344213317|ref|YP_004797637.1| - 0.00013 21.6 0.3 0.00025 20.6 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|344213317|ref|YP_004797637.1| - 0.00014 21.7 0.1 0.00022 21.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344213317|ref|YP_004797637.1| - 0.00089 19.3 0.4 0.0045 17.0 0.4 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|344213317|ref|YP_004797637.1| - 0.0012 18.7 0.3 0.0021 18.0 0.3 1.3 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.17 gi|344213317|ref|YP_004797637.1| - 0.0033 17.3 0.0 0.0039 17.0 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit DUF746 PF05344.11 gi|344213317|ref|YP_004797637.1| - 0.016 15.0 0.0 7.3 6.5 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_27 PF13463.6 gi|344213317|ref|YP_004797637.1| - 0.027 15.0 0.1 0.06 13.9 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|344213317|ref|YP_004797637.1| - 0.046 13.7 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|344213317|ref|YP_004797637.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|344213317|ref|YP_004797637.1| - 0.1 12.9 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Pribosyltran PF00156.27 gi|344213318|ref|YP_004797638.1| - 1.2e-06 28.2 0.0 2.5e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase domain DUF4224 PF13986.6 gi|344213318|ref|YP_004797638.1| - 0.14 12.1 0.0 0.42 10.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) OTCace_N PF02729.21 gi|344213319|ref|YP_004797639.1| - 1.7e-51 174.1 0.0 2.6e-51 173.5 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|344213319|ref|YP_004797639.1| - 4.5e-47 160.0 0.0 8e-47 159.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.28 gi|344213320|ref|YP_004797640.1| - 1.2e-24 87.2 0.2 1.7e-24 86.7 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344213320|ref|YP_004797640.1| - 4.5e-06 26.5 0.0 8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Aminotran_3 PF00202.21 gi|344213321|ref|YP_004797641.1| - 2.4e-105 352.5 0.0 3.1e-105 352.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III AA_kinase PF00696.28 gi|344213322|ref|YP_004797642.1| - 1.7e-36 126.0 2.0 2.1e-36 125.7 2.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|344213323|ref|YP_004797643.1| - 4.1e-26 91.8 0.0 7.5e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|344213323|ref|YP_004797643.1| - 8.1e-07 29.3 0.0 1.5e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain RimK PF08443.11 gi|344213324|ref|YP_004797644.1| - 1.6e-18 67.0 0.0 1.3e-16 60.8 0.0 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|344213324|ref|YP_004797644.1| - 3.7e-09 36.2 0.0 5.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|344213324|ref|YP_004797644.1| - 2.9e-07 30.7 0.0 4.5e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|344213324|ref|YP_004797644.1| - 0.00011 21.8 0.0 0.00048 19.7 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|344213324|ref|YP_004797644.1| - 0.00012 21.6 0.0 0.00059 19.3 0.0 2.1 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|344213324|ref|YP_004797644.1| - 0.00073 19.2 0.1 0.002 17.7 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|344213324|ref|YP_004797644.1| - 0.17 11.1 0.0 0.46 9.7 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp Rimk_N PF18030.1 gi|344213324|ref|YP_004797644.1| - 0.2 12.1 0.0 0.56 10.6 0.0 1.9 1 0 0 1 1 1 0 RimK PreATP-grasp domain DNA_RNApol_7kD PF03604.13 gi|344213325|ref|YP_004797645.1| - 0.0014 18.3 1.9 0.012 15.3 1.8 2.0 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|344213325|ref|YP_004797645.1| - 0.0021 18.0 1.2 0.0081 16.1 1.2 1.8 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|344213325|ref|YP_004797645.1| - 0.028 14.5 0.3 0.39 10.8 0.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|344213325|ref|YP_004797645.1| - 0.031 14.6 0.5 0.042 14.2 0.5 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.19 gi|344213325|ref|YP_004797645.1| - 0.039 14.0 0.2 0.042 13.9 0.2 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|344213325|ref|YP_004797645.1| - 0.057 13.5 0.1 1.8 8.6 0.0 2.0 2 0 0 2 2 2 0 CpXC protein TackOD1 PF18551.1 gi|344213325|ref|YP_004797645.1| - 0.12 12.1 0.1 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 RNA_POL_M_15KD PF02150.16 gi|344213325|ref|YP_004797645.1| - 0.12 12.3 1.4 0.52 10.2 1.4 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit ADD_ATRX PF17981.1 gi|344213325|ref|YP_004797645.1| - 0.16 11.8 0.5 0.83 9.6 0.1 1.9 1 1 1 2 2 2 0 Cysteine Rich ADD domain Zn-ribbon_8 PF09723.10 gi|344213325|ref|YP_004797645.1| - 0.17 12.0 1.1 0.55 10.4 1.2 1.8 1 1 1 2 2 2 0 Zinc ribbon domain Lyase_1 PF00206.20 gi|344213326|ref|YP_004797646.1| - 4e-54 184.1 0.0 6.7e-54 183.4 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|344213326|ref|YP_004797646.1| - 4e-16 59.5 1.4 1.8e-15 57.4 1.4 2.2 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal Toprim PF01751.22 gi|344213326|ref|YP_004797646.1| - 0.084 13.1 1.9 2 8.7 0.1 2.6 2 1 0 2 2 2 0 Toprim domain SUD-M PF11633.8 gi|344213326|ref|YP_004797646.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Single-stranded poly(A) binding domain UCR_Fe-S_N PF10399.9 gi|344213326|ref|YP_004797646.1| - 2.1 7.8 7.5 1.6 8.1 0.1 2.8 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Arginosuc_synth PF00764.19 gi|344213327|ref|YP_004797647.1| - 9.6e-148 492.6 0.1 1.1e-147 492.4 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|344213327|ref|YP_004797647.1| - 4.4e-06 26.3 0.0 7.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|344213327|ref|YP_004797647.1| - 0.00077 18.4 0.0 0.0012 17.8 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|344213327|ref|YP_004797647.1| - 0.0008 19.2 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|344213327|ref|YP_004797647.1| - 0.0025 17.0 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase UPF0242 PF06785.11 gi|344213328|ref|YP_004797648.1| - 0.51 10.4 3.0 0.73 9.9 3.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DASH_Spc19 PF08287.11 gi|344213328|ref|YP_004797648.1| - 0.52 10.2 6.1 0.99 9.3 6.1 1.4 1 0 0 1 1 1 0 Spc19 DUF4897 PF16238.5 gi|344213329|ref|YP_004797649.1| - 0.0026 17.6 0.0 0.0039 17.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) Gram_pos_anchor PF00746.21 gi|344213329|ref|YP_004797649.1| - 0.086 12.8 0.8 0.086 12.8 0.8 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF4191 PF13829.6 gi|344213330|ref|YP_004797650.1| - 6.5 6.0 7.0 6.8 6.0 7.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF2116 PF09889.9 gi|344213330|ref|YP_004797650.1| - 9.2 6.3 6.4 23 5.1 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) 2_5_RNA_ligase2 PF13563.6 gi|344213331|ref|YP_004797651.1| - 1.6e-17 63.8 0.1 1.8e-17 63.7 0.1 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|344213331|ref|YP_004797651.1| - 1.4e-05 25.2 0.0 0.0047 17.1 0.0 2.6 2 1 0 2 2 2 2 LigT like Phosphoesterase CDPS PF16715.5 gi|344213331|ref|YP_004797651.1| - 0.087 12.5 0.0 0.8 9.3 0.0 2.0 2 0 0 2 2 2 0 Cyclodipeptide synthase DUF296 PF03479.15 gi|344213332|ref|YP_004797652.1| - 9.5e-20 71.0 0.0 1.1e-19 70.7 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain PolC_DP2 PF03833.13 gi|344213333|ref|YP_004797653.1| - 0 1338.9 0.0 0 1338.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|344213333|ref|YP_004797653.1| - 2.8e-06 27.3 0.0 6.4e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Intein splicing domain zinc-ribbons_6 PF07191.12 gi|344213333|ref|YP_004797653.1| - 0.0022 18.0 11.0 0.045 13.7 7.6 2.4 2 0 0 2 2 2 2 zinc-ribbons HypA PF01155.19 gi|344213333|ref|YP_004797653.1| - 0.1 12.6 18.1 1.1 9.3 1.1 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|344213333|ref|YP_004797653.1| - 0.21 11.7 17.6 4.8 7.3 11.7 3.0 2 1 0 2 2 2 0 Double zinc ribbon Nop10p PF04135.12 gi|344213333|ref|YP_004797653.1| - 0.69 10.0 7.0 18 5.5 0.0 3.4 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family TackOD1 PF18551.1 gi|344213333|ref|YP_004797653.1| - 2.7 7.6 10.6 12 5.5 0.2 2.3 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 2-Hacid_dh_C PF02826.19 gi|344213335|ref|YP_004797655.1| - 2.8e-58 196.2 0.0 5e-58 195.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|344213335|ref|YP_004797655.1| - 5.2e-36 123.3 0.4 1.4e-35 121.9 0.6 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|344213335|ref|YP_004797655.1| - 3.2e-07 30.0 0.7 1.5e-05 24.6 0.0 2.8 2 0 0 2 2 2 1 ACT domain NAD_binding_2 PF03446.15 gi|344213335|ref|YP_004797655.1| - 0.00036 20.7 0.1 0.0018 18.4 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.15 gi|344213335|ref|YP_004797655.1| - 0.00055 20.3 0.0 0.004 17.5 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IlvN PF07991.12 gi|344213335|ref|YP_004797655.1| - 0.00093 18.8 0.0 0.0041 16.7 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|344213335|ref|YP_004797655.1| - 0.015 15.5 0.3 0.16 12.3 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain F420_oxidored PF03807.17 gi|344213335|ref|YP_004797655.1| - 0.024 15.2 0.4 0.19 12.4 0.0 2.7 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|344213335|ref|YP_004797655.1| - 0.043 14.3 0.0 0.11 13.0 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|344213335|ref|YP_004797655.1| - 0.049 14.1 0.0 0.16 12.5 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|344213335|ref|YP_004797655.1| - 0.12 12.4 0.0 0.44 10.6 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase CBS PF00571.28 gi|344213337|ref|YP_004797657.1| - 6.4e-32 109.8 10.4 1.2e-09 38.4 0.2 4.1 4 0 0 4 4 4 4 CBS domain HGTP_anticodon PF03129.20 gi|344213338|ref|YP_004797658.1| - 2.3e-21 75.7 0.0 5.5e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|344213338|ref|YP_004797658.1| - 7.2e-10 39.1 0.0 9.3e-09 35.5 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zinc_ribbon_4 PF13717.6 gi|344213338|ref|YP_004797658.1| - 0.071 13.1 0.6 14 5.7 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain ERCC4 PF02732.15 gi|344213340|ref|YP_004797660.1| - 3.3e-23 82.6 0.0 1.4e-22 80.6 0.0 2.1 2 1 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.31 gi|344213340|ref|YP_004797660.1| - 8.6e-23 80.8 0.0 7.2e-22 77.8 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|344213340|ref|YP_004797660.1| - 2.1e-16 60.2 0.0 5e-16 59.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|344213340|ref|YP_004797660.1| - 1e-11 45.1 0.0 2.3e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|344213340|ref|YP_004797660.1| - 1.1e-11 45.2 0.3 4.5e-11 43.2 0.3 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|344213340|ref|YP_004797660.1| - 3.2e-11 43.2 0.1 8.8e-11 41.8 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|344213340|ref|YP_004797660.1| - 2.6e-07 30.1 0.6 3.8e-05 23.3 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.6 gi|344213340|ref|YP_004797660.1| - 0.014 15.6 1.2 0.05 13.8 0.1 2.5 1 1 2 3 3 3 0 Helicase C-terminal domain RuvB_N PF05496.12 gi|344213340|ref|YP_004797660.1| - 0.024 14.4 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain 5_3_exonuc PF01367.20 gi|344213340|ref|YP_004797660.1| - 0.073 13.7 0.2 0.65 10.6 0.0 2.5 2 1 1 3 3 2 0 5'-3' exonuclease, C-terminal SAM fold HMG_box_5 PF14887.6 gi|344213340|ref|YP_004797660.1| - 0.25 11.3 1.6 0.54 10.3 0.4 2.2 2 0 0 2 2 2 0 HMG (high mobility group) box 5 Auto_anti-p27 PF06677.12 gi|344213341|ref|YP_004797661.1| - 2e-14 53.4 0.4 2.9e-14 52.9 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|344213341|ref|YP_004797661.1| - 0.0017 18.3 1.5 0.0034 17.4 1.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|344213341|ref|YP_004797661.1| - 0.0043 17.0 0.6 0.0069 16.3 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbons GFA PF04828.14 gi|344213341|ref|YP_004797661.1| - 0.039 14.3 1.0 2.2 8.7 0.1 2.4 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C3HC4_3 PF13920.6 gi|344213341|ref|YP_004797661.1| - 0.12 12.2 0.4 0.2 11.5 0.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FYVE_2 PF02318.16 gi|344213341|ref|YP_004797661.1| - 0.13 12.5 0.2 0.23 11.7 0.2 1.3 1 0 0 1 1 1 0 FYVE-type zinc finger Nudix_N_2 PF14803.6 gi|344213341|ref|YP_004797661.1| - 0.2 11.6 2.0 16 5.5 0.1 2.7 2 0 0 2 2 2 0 Nudix N-terminal zf-UDP PF14569.6 gi|344213341|ref|YP_004797661.1| - 0.32 11.1 2.2 0.84 9.8 2.2 1.6 1 1 0 1 1 1 0 Zinc-binding RING-finger A2L_zn_ribbon PF08792.10 gi|344213341|ref|YP_004797661.1| - 0.33 10.7 1.3 0.53 10.1 1.3 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|344213341|ref|YP_004797661.1| - 0.35 10.3 4.3 1.7 8.1 4.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|344213341|ref|YP_004797661.1| - 0.66 9.8 3.5 1.6 8.6 3.5 1.7 1 0 0 1 1 1 0 zinc-ribbon domain SOG2 PF10428.9 gi|344213341|ref|YP_004797661.1| - 0.67 9.1 8.7 0.82 8.8 8.7 1.3 1 0 0 1 1 1 0 RAM signalling pathway protein Ldh_1_N PF00056.23 gi|344213342|ref|YP_004797662.1| - 5.8e-39 133.4 0.2 8.4e-39 132.9 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|344213342|ref|YP_004797662.1| - 7.3e-29 100.8 0.0 1.2e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF2072 PF09845.9 gi|344213344|ref|YP_004797664.1| - 1.6e-32 112.5 4.3 2.6e-30 105.4 4.3 2.2 1 1 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|344213344|ref|YP_004797664.1| - 0.012 15.7 2.1 0.029 14.5 2.1 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.11 gi|344213344|ref|YP_004797664.1| - 0.11 12.5 1.8 0.17 11.9 0.7 1.7 2 0 0 2 2 2 0 Zinc-ribbon containing domain HypA PF01155.19 gi|344213344|ref|YP_004797664.1| - 0.18 11.8 0.4 0.28 11.2 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|344213344|ref|YP_004797664.1| - 0.31 11.5 3.7 0.62 10.5 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2073 PF09846.9 gi|344213345|ref|YP_004797665.1| - 9.5e-46 154.0 0.7 1.2e-45 153.7 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|344213346|ref|YP_004797666.1| - 6.2e-15 55.3 0.0 8.3e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|344213346|ref|YP_004797666.1| - 1.3e-10 41.1 0.2 0.00096 18.7 0.0 3.4 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|344213346|ref|YP_004797666.1| - 1.1e-07 31.5 0.0 0.0001 21.8 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|344213346|ref|YP_004797666.1| - 1.6e-05 24.5 0.3 0.00014 21.4 0.3 2.3 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|344213346|ref|YP_004797666.1| - 2.4e-05 24.3 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase Septin PF00735.18 gi|344213346|ref|YP_004797666.1| - 0.00022 20.6 0.0 0.00031 20.1 0.0 1.3 1 1 0 1 1 1 1 Septin SRPRB PF09439.10 gi|344213346|ref|YP_004797666.1| - 0.00029 20.3 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|344213346|ref|YP_004797666.1| - 0.00033 20.9 0.0 0.0076 16.5 0.0 2.1 1 1 1 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1_Xtn PF16897.5 gi|344213346|ref|YP_004797666.1| - 0.00037 20.5 0.0 0.00068 19.6 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|344213346|ref|YP_004797666.1| - 0.00063 19.4 0.0 0.2 11.3 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_28 PF13521.6 gi|344213346|ref|YP_004797666.1| - 0.0012 19.2 0.2 0.094 12.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|344213346|ref|YP_004797666.1| - 0.0019 17.4 0.0 0.0031 16.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_24 PF13479.6 gi|344213346|ref|YP_004797666.1| - 0.002 17.9 0.1 0.0077 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|344213346|ref|YP_004797666.1| - 0.0023 18.5 0.0 0.01 16.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|344213346|ref|YP_004797666.1| - 0.0056 16.8 0.0 0.65 10.0 0.1 2.4 1 1 1 2 2 2 1 Dynamin family AAA PF00004.29 gi|344213346|ref|YP_004797666.1| - 0.0064 16.9 0.0 0.024 15.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|344213346|ref|YP_004797666.1| - 0.0089 15.6 0.1 2.6 7.6 0.1 2.3 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|344213346|ref|YP_004797666.1| - 0.013 15.8 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|344213346|ref|YP_004797666.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|344213346|ref|YP_004797666.1| - 0.034 13.9 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|344213346|ref|YP_004797666.1| - 0.036 14.4 0.0 0.074 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|344213346|ref|YP_004797666.1| - 0.045 14.3 0.0 0.075 13.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.6 gi|344213346|ref|YP_004797666.1| - 0.077 12.6 0.1 0.18 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|344213346|ref|YP_004797666.1| - 0.088 11.8 0.1 3.5 6.5 0.0 2.7 3 1 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|344213346|ref|YP_004797666.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|344213346|ref|YP_004797666.1| - 0.17 10.9 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/all.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/all.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:43:08 2019 # [ok]