# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|344210306|ref|YP_004794626.1| - 2.3e-28 97.7 0.1 6.6e-28 96.2 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|344210306|ref|YP_004794626.1| - 4.1e-13 49.7 3.2 3.4e-12 46.7 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|344210306|ref|YP_004794626.1| - 4.6e-10 39.7 0.2 9.4e-09 35.5 0.1 2.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344210306|ref|YP_004794626.1| - 3.3e-08 33.7 0.8 6.7e-06 26.3 0.5 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|344210306|ref|YP_004794626.1| - 5.9e-05 22.8 0.4 0.00024 20.9 0.2 1.9 1 1 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|344210306|ref|YP_004794626.1| - 0.00049 19.0 0.0 0.00087 18.2 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.9 gi|344210306|ref|YP_004794626.1| - 0.001 19.0 0.0 0.0081 16.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|344210306|ref|YP_004794626.1| - 0.0013 19.5 0.5 0.0066 17.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|344210306|ref|YP_004794626.1| - 0.002 18.4 0.6 0.0083 16.4 0.1 2.4 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|344210306|ref|YP_004794626.1| - 0.0022 16.9 0.0 0.0054 15.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|344210306|ref|YP_004794626.1| - 0.0031 17.0 0.0 0.0071 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|344210306|ref|YP_004794626.1| - 0.0041 16.1 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus NB-ARC PF00931.17 gi|344210306|ref|YP_004794626.1| - 0.016 14.0 0.0 0.026 13.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|344210306|ref|YP_004794626.1| - 0.038 13.5 0.1 0.098 12.2 0.1 1.7 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|344210306|ref|YP_004794626.1| - 0.045 12.7 0.2 0.16 10.9 0.1 1.8 1 1 0 1 1 1 0 KAP family P-loop domain NACHT PF05729.7 gi|344210306|ref|YP_004794626.1| - 0.06 12.9 0.3 1.5 8.4 0.1 3.0 2 1 0 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|344210306|ref|YP_004794626.1| - 0.061 13.6 0.0 0.16 12.2 0.0 1.9 1 1 0 1 1 1 0 ABC transporter DEAD PF00270.24 gi|344210306|ref|YP_004794626.1| - 0.093 12.2 3.8 0.48 9.9 0.8 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase BLOC1_2 PF10046.4 gi|344210306|ref|YP_004794626.1| - 0.11 12.6 3.4 1.1 9.4 2.4 2.6 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RNA_helicase PF00910.17 gi|344210306|ref|YP_004794626.1| - 0.14 12.3 0.0 0.37 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase FtsK_SpoIIIE PF01580.13 gi|344210306|ref|YP_004794626.1| - 0.28 10.6 3.5 1.4 8.3 2.4 2.0 1 1 0 1 1 1 0 FtsK/SpoIIIE family DUF3422 PF11902.3 gi|344210306|ref|YP_004794626.1| - 4.1 6.1 8.8 6.5 5.5 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3422) AAA_23 PF13476.1 gi|344210306|ref|YP_004794626.1| - 4.6 7.5 11.1 7.8 6.7 1.0 2.7 1 1 1 2 2 2 0 AAA domain Peptidase_S24 PF00717.18 gi|344210307|ref|YP_004794627.1| - 7.4e-06 25.5 0.6 2.4e-05 23.8 0.4 1.8 1 1 0 1 1 1 1 Peptidase S24-like Peptidase_S24 PF00717.18 gi|344210308|ref|YP_004794628.1| - 1.3e-07 31.1 0.1 2.9e-07 30.0 0.1 1.6 1 1 0 1 1 1 1 Peptidase S24-like PepSY_TM_1 PF13172.1 gi|344210308|ref|YP_004794628.1| - 2.7 7.8 5.0 1.5 8.6 1.9 1.8 2 0 0 2 2 2 0 PepSY-associated TM helix DNA_pol_E_B PF04042.11 gi|344210309|ref|YP_004794629.1| - 1.1e-12 47.6 0.0 1.7e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|344210309|ref|YP_004794629.1| - 1.3e-12 47.8 0.3 2.9e-12 46.6 0.2 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344210309|ref|YP_004794629.1| - 9.2e-10 38.2 0.8 1.5e-09 37.5 0.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Colicin_M PF14859.1 gi|344210309|ref|YP_004794629.1| - 0.046 12.5 0.1 0.074 11.9 0.0 1.2 1 0 0 1 1 1 0 Colicin M Cys_Met_Meta_PP PF01053.15 gi|344210310|ref|YP_004794630.1| - 1e-136 455.2 0.0 1.2e-136 455.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|344210310|ref|YP_004794630.1| - 6.4e-07 28.6 0.0 9.5e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|344210310|ref|YP_004794630.1| - 1.1e-06 27.9 0.1 1.9e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|344210310|ref|YP_004794630.1| - 7.3e-05 21.6 0.3 0.00017 20.4 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|344210310|ref|YP_004794630.1| - 0.0099 15.0 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase SLA_LP_auto_ag PF05889.8 gi|344210310|ref|YP_004794630.1| - 0.1 11.0 0.0 0.14 10.5 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) HAD PF12710.2 gi|344210311|ref|YP_004794631.1| - 3e-21 76.4 0.2 3.6e-21 76.2 0.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344210311|ref|YP_004794631.1| - 8.8e-16 58.9 2.8 6e-12 46.4 0.4 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344210311|ref|YP_004794631.1| - 6.4e-09 35.7 0.1 5.6e-05 22.8 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|344210311|ref|YP_004794631.1| - 1e-07 32.3 0.0 2.2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|344210311|ref|YP_004794631.1| - 0.00061 19.0 0.0 0.0067 15.6 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.1 gi|344210311|ref|YP_004794631.1| - 0.021 14.6 0.0 0.093 12.6 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.7 gi|344210311|ref|YP_004794631.1| - 0.045 13.0 0.0 0.067 12.4 0.0 1.3 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Helicase_C_2 PF13307.1 gi|344210313|ref|YP_004794633.1| - 7.6e-30 104.0 0.0 2.3e-29 102.4 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|344210313|ref|YP_004794633.1| - 5.4e-21 74.7 0.1 4e-20 71.9 0.1 2.3 2 1 0 2 2 2 1 DEAD_2 DEAD PF00270.24 gi|344210313|ref|YP_004794633.1| - 4.2e-10 39.3 0.2 6.6e-07 28.9 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|344210313|ref|YP_004794633.1| - 8.3e-06 25.7 0.5 8.8e-05 22.4 0.3 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4456 PF14644.1 gi|344210313|ref|YP_004794633.1| - 0.00068 18.9 0.8 0.051 12.7 0.2 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4456) KaiC PF06745.8 gi|344210313|ref|YP_004794633.1| - 0.0034 16.5 0.0 0.0061 15.6 0.0 1.5 1 0 0 1 1 1 1 KaiC Zot PF05707.7 gi|344210313|ref|YP_004794633.1| - 0.0041 16.5 0.1 0.93 8.9 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|344210313|ref|YP_004794633.1| - 0.016 14.9 0.1 0.058 13.1 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_34 PF13872.1 gi|344210313|ref|YP_004794633.1| - 0.032 12.9 0.0 0.062 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 AAA PF00004.24 gi|344210313|ref|YP_004794633.1| - 0.033 14.3 0.1 4.1 7.6 0.1 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|344210313|ref|YP_004794633.1| - 0.056 12.3 0.1 2.1 7.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|344210313|ref|YP_004794633.1| - 0.058 12.6 0.1 0.19 10.9 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein TrwB_AAD_bind PF10412.4 gi|344210313|ref|YP_004794633.1| - 0.1 11.2 0.0 0.2 10.2 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain HCMV_UL139 PF12507.3 gi|344210313|ref|YP_004794633.1| - 0.29 11.3 4.1 0.39 10.9 0.1 2.8 3 0 0 3 3 3 0 Human Cytomegalovirus UL139 protein HAUS-augmin3 PF14932.1 gi|344210313|ref|YP_004794633.1| - 1.2 8.2 6.1 0.26 10.4 0.1 2.3 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 3 Cation_efflux PF01545.16 gi|344210315|ref|YP_004794635.1| - 1.9e-45 155.1 0.0 2.1e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Cation efflux family BacA PF02673.13 gi|344210315|ref|YP_004794635.1| - 0.0076 15.4 0.8 0.015 14.4 0.0 1.9 2 0 0 2 2 2 1 Bacitracin resistance protein BacA DsbD_2 PF13386.1 gi|344210315|ref|YP_004794635.1| - 0.019 14.7 1.2 0.029 14.1 0.1 1.8 2 0 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF2976 PF11190.3 gi|344210315|ref|YP_004794635.1| - 0.05 13.1 0.2 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF161 PF02588.10 gi|344210315|ref|YP_004794635.1| - 0.49 10.7 4.0 2 8.7 0.1 2.7 2 1 0 2 2 2 0 Uncharacterized BCR, YitT family COG1284 Metallophos_2 PF12850.2 gi|344210316|ref|YP_004794636.1| - 1.7e-23 83.1 1.4 2e-23 82.9 0.9 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344210316|ref|YP_004794636.1| - 4.1e-05 23.0 6.0 0.027 13.8 0.5 2.3 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase Glyco_trans_4_4 PF13579.1 gi|344210316|ref|YP_004794636.1| - 0.033 14.3 2.4 0.066 13.3 1.5 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Metallophos_3 PF14582.1 gi|344210316|ref|YP_004794636.1| - 0.13 11.3 0.1 0.29 10.2 0.0 1.5 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily HTH_20 PF12840.2 gi|344210317|ref|YP_004794637.1| - 1.7e-14 53.3 0.1 2.8e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344210317|ref|YP_004794637.1| - 7.4e-08 31.6 0.0 1.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344210317|ref|YP_004794637.1| - 0.00013 21.5 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344210317|ref|YP_004794637.1| - 0.00039 20.0 0.0 0.0006 19.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|344210317|ref|YP_004794637.1| - 0.0091 15.6 0.0 0.029 14.0 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|344210317|ref|YP_004794637.1| - 0.015 15.3 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|344210317|ref|YP_004794637.1| - 0.052 13.1 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Rrf2 PF02082.15 gi|344210317|ref|YP_004794637.1| - 0.096 12.8 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF3899 PF13038.1 gi|344210318|ref|YP_004794638.1| - 0.034 14.2 1.1 0.036 14.2 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3899) FtsH_ext PF06480.10 gi|344210318|ref|YP_004794638.1| - 0.11 12.7 0.2 0.11 12.7 0.1 1.1 1 0 0 1 1 1 0 FtsH Extracellular Peptidase_M29 PF02073.10 gi|344210319|ref|YP_004794639.1| - 1.2e-111 373.2 0.6 1.5e-111 372.9 0.4 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF307 PF03733.8 gi|344210320|ref|YP_004794640.1| - 1.2e-09 38.4 27.8 1.6e-05 25.2 7.3 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF307) Phage_Coat_Gp8 PF05371.7 gi|344210320|ref|YP_004794640.1| - 2.2 7.9 4.4 7.3 6.2 0.3 2.2 2 0 0 2 2 2 0 Phage major coat protein, Gp8 DUF21 PF01595.15 gi|344210321|ref|YP_004794641.1| - 1.1e-44 151.9 3.5 1.3e-44 151.7 2.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF21 DZR PF12773.2 gi|344210322|ref|YP_004794642.1| - 0.0004 20.1 0.7 0.00054 19.7 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344210322|ref|YP_004794642.1| - 0.0039 16.3 2.3 0.0055 15.8 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344210322|ref|YP_004794642.1| - 0.0086 15.5 1.6 0.013 15.0 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-DHHC PF01529.15 gi|344210322|ref|YP_004794642.1| - 0.075 12.4 0.5 0.11 11.9 0.2 1.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase 7TMR-DISM_7TM PF07695.6 gi|344210323|ref|YP_004794643.1| - 0.71 9.5 10.4 0.98 9.0 7.2 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4131 PF13567.1 gi|344210323|ref|YP_004794643.1| - 0.75 9.1 13.5 0.75 9.1 0.8 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2157 PF09925.4 gi|344210323|ref|YP_004794643.1| - 5.7 6.5 16.5 2.2e+02 1.4 11.4 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Radical_SAM PF04055.16 gi|344210324|ref|YP_004794644.1| - 7.4e-06 26.2 0.8 0.00034 20.8 0.6 2.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|344210324|ref|YP_004794644.1| - 0.00021 21.3 0.0 0.00037 20.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|344210324|ref|YP_004794644.1| - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TetR_C PF02909.12 gi|344210324|ref|YP_004794644.1| - 0.081 12.5 0.4 2.7 7.6 0.0 2.5 2 0 0 2 2 2 0 Tetracyclin repressor, C-terminal all-alpha domain PASTA PF03793.14 gi|344210324|ref|YP_004794644.1| - 0.12 12.0 0.0 0.56 9.8 0.0 2.1 2 0 0 2 2 2 0 PASTA domain MFS_1 PF07690.11 gi|344210325|ref|YP_004794645.1| - 2.9e-43 147.9 81.2 6.7e-43 146.7 41.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|344210325|ref|YP_004794645.1| - 0.028 14.2 1.4 0.028 14.2 0.9 3.2 4 0 0 4 4 4 0 MFS_1 like family OppC_N PF12911.2 gi|344210325|ref|YP_004794645.1| - 0.12 11.7 0.2 0.12 11.7 0.1 2.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C PsiE PF06146.7 gi|344210326|ref|YP_004794646.1| - 5.1e-16 58.6 9.3 5.5e-16 58.5 4.4 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E TspO_MBR PF03073.10 gi|344210326|ref|YP_004794646.1| - 0.014 14.9 2.0 0.018 14.5 1.4 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF2177 PF09945.4 gi|344210326|ref|YP_004794646.1| - 0.87 9.5 8.6 0.5 10.3 2.7 2.5 1 1 2 3 3 3 0 Predicted membrane protein (DUF2177) DUF1129 PF06570.6 gi|344210326|ref|YP_004794646.1| - 1.1 8.5 5.6 0.25 10.6 1.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) ABC2_membrane_2 PF12679.2 gi|344210326|ref|YP_004794646.1| - 2.9 6.6 8.2 4.5 6.0 5.7 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein Tetraspannin PF00335.15 gi|344210326|ref|YP_004794646.1| - 3 7.0 7.0 0.93 8.7 0.9 2.1 1 1 1 2 2 2 0 Tetraspanin family DUF373 PF04123.8 gi|344210327|ref|YP_004794647.1| - 9.5e-115 383.2 9.8 1.2e-114 382.9 6.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) ATP_synt_I PF03899.10 gi|344210327|ref|YP_004794647.1| - 0.045 13.9 7.6 1.6 8.9 0.1 2.5 2 0 0 2 2 2 0 ATP synthase I chain Myco_arth_vir_N PF09610.5 gi|344210327|ref|YP_004794647.1| - 0.86 9.6 4.7 1.4 8.9 0.6 2.8 2 0 0 2 2 2 0 Mycoplasma virulence signal region (Myco_arth_vir_N) DUF3186 PF11382.3 gi|344210328|ref|YP_004794648.1| - 0.0002 20.6 0.5 0.00027 20.1 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3186) DUF1320 PF07030.7 gi|344210328|ref|YP_004794648.1| - 0.18 11.5 2.0 0.27 10.9 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1320) Bac_globin PF01152.16 gi|344210329|ref|YP_004794649.1| - 2.5e-27 95.2 0.0 2.8e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|344210329|ref|YP_004794649.1| - 8.4e-06 25.5 0.0 4.6e-05 23.1 0.0 1.9 1 1 0 2 2 2 1 Protoglobin CMD PF02627.15 gi|344210329|ref|YP_004794649.1| - 0.017 14.9 0.3 0.03 14.1 0.2 1.5 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family Peptidase_MA_2 PF13485.1 gi|344210330|ref|YP_004794650.1| - 0.0028 17.6 0.2 0.0054 16.7 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily TRAM PF01938.15 gi|344210331|ref|YP_004794651.1| - 2e-07 30.6 0.2 2.8e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 TRAM domain Tom22 PF04281.8 gi|344210331|ref|YP_004794651.1| - 1.1 8.7 5.1 1.7 8.2 3.5 1.2 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 adh_short_C2 PF13561.1 gi|344210332|ref|YP_004794652.1| - 2.2e-26 93.0 0.0 2.7e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|344210332|ref|YP_004794652.1| - 2.2e-20 73.2 0.7 3.6e-20 72.5 0.3 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344210332|ref|YP_004794652.1| - 3.4e-11 43.1 0.2 5.9e-11 42.3 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|344210332|ref|YP_004794652.1| - 0.0004 20.4 0.3 0.00061 19.8 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|344210332|ref|YP_004794652.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NTP_transferase PF00483.18 gi|344210333|ref|YP_004794653.1| - 1.1e-38 133.0 0.0 1.6e-38 132.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|344210333|ref|YP_004794653.1| - 5.3e-06 26.6 0.0 1.4e-05 25.2 0.0 1.7 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|344210333|ref|YP_004794653.1| - 0.0049 16.4 0.1 0.0071 15.9 0.1 1.3 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase OEP PF02321.13 gi|344210334|ref|YP_004794654.1| - 0.066 12.8 0.3 0.08 12.5 0.2 1.1 1 0 0 1 1 1 0 Outer membrane efflux protein tRNA_anti-codon PF01336.20 gi|344210335|ref|YP_004794655.1| - 0.0011 18.8 0.2 0.0087 15.9 0.0 2.4 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Glyoxalase_2 PF12681.2 gi|344210337|ref|YP_004794657.1| - 5e-19 68.9 0.0 6.5e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344210337|ref|YP_004794657.1| - 3.6e-16 59.3 0.0 4.2e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|344210337|ref|YP_004794657.1| - 7.7e-12 45.1 0.0 9.6e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|344210337|ref|YP_004794657.1| - 1.1e-05 25.4 0.1 1.5e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain RHH_1 PF01402.16 gi|344210338|ref|YP_004794658.1| - 5.6e-05 22.8 0.1 5.6e-05 22.8 0.1 2.3 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family AAA_27 PF13514.1 gi|344210338|ref|YP_004794658.1| - 0.0029 15.3 1.5 0.003 15.3 1.1 1.1 1 0 0 1 1 1 1 AAA domain DUF4047 PF13256.1 gi|344210338|ref|YP_004794658.1| - 0.023 14.6 2.0 0.03 14.2 1.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4047) Condensation PF00668.15 gi|344210338|ref|YP_004794658.1| - 0.035 12.9 0.5 2 7.1 0.0 2.1 2 0 0 2 2 2 0 Condensation domain DUF3562 PF12085.3 gi|344210338|ref|YP_004794658.1| - 0.039 13.7 1.0 0.11 12.3 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3562) Noc2 PF03715.8 gi|344210338|ref|YP_004794658.1| - 0.15 10.9 0.1 0.19 10.5 0.1 1.1 1 0 0 1 1 1 0 Noc2p family MIF4G_like_2 PF09090.6 gi|344210338|ref|YP_004794658.1| - 0.21 10.7 1.8 1.4 8.0 0.0 2.0 2 0 0 2 2 2 0 MIF4G like DUF972 PF06156.8 gi|344210338|ref|YP_004794658.1| - 0.24 11.7 3.2 0.47 10.8 2.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF972) V_ATPase_I PF01496.14 gi|344210338|ref|YP_004794658.1| - 0.7 7.6 2.2 0.69 7.6 1.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family IncA PF04156.9 gi|344210338|ref|YP_004794658.1| - 1.3 8.5 7.2 1.8 8.1 5.0 1.5 1 1 0 1 1 1 0 IncA protein zf-Mss51 PF13824.1 gi|344210338|ref|YP_004794658.1| - 7.7 6.4 7.5 1.5 8.7 1.3 2.4 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 HNH PF01844.18 gi|344210340|ref|YP_004794660.1| - 1.3e-06 28.1 0.2 2.6e-06 27.1 0.2 1.5 1 1 0 1 1 1 1 HNH endonuclease Pribosyltran PF00156.22 gi|344210342|ref|YP_004794662.1| - 1e-27 96.3 0.8 1.6e-26 92.4 0.6 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|344210342|ref|YP_004794662.1| - 3.3e-05 23.2 0.0 0.00022 20.5 0.0 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|344210342|ref|YP_004794662.1| - 5.5e-05 22.4 0.0 9.4e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase CBS PF00571.23 gi|344210343|ref|YP_004794663.1| - 3.6e-28 97.0 4.8 3.3e-15 55.5 0.3 2.3 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|344210343|ref|YP_004794663.1| - 1.7e-21 76.0 11.1 4e-16 58.5 3.6 2.6 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|344210343|ref|YP_004794663.1| - 0.0014 18.0 8.9 0.0049 16.2 6.2 1.9 1 1 0 1 1 1 1 Peptidase M50B-like Cupin_2 PF07883.6 gi|344210344|ref|YP_004794664.1| - 2.1e-19 68.7 0.3 2.7e-19 68.4 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|344210344|ref|YP_004794664.1| - 2.6e-10 39.9 0.0 3.6e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|344210344|ref|YP_004794664.1| - 5.6e-05 22.8 0.2 7.4e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|344210344|ref|YP_004794664.1| - 0.00034 19.9 0.1 0.00048 19.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|344210344|ref|YP_004794664.1| - 0.00088 18.9 0.0 0.0011 18.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|344210344|ref|YP_004794664.1| - 0.0017 18.2 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like DEAD PF00270.24 gi|344210345|ref|YP_004794665.1| - 3.2e-24 85.3 0.0 9.1e-24 83.8 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|344210345|ref|YP_004794665.1| - 2.5e-12 46.4 0.0 5.6e-12 45.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|344210345|ref|YP_004794665.1| - 4e-07 30.0 0.0 1.7e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhnA_Zn_Ribbon PF08274.7 gi|344210345|ref|YP_004794665.1| - 0.052 13.3 0.8 0.1 12.3 0.6 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon SNF2_N PF00176.18 gi|344210345|ref|YP_004794665.1| - 0.17 10.6 0.0 0.23 10.1 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF3806 PF12713.2 gi|344210346|ref|YP_004794666.1| - 0.0052 16.2 0.3 1.1 8.7 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF3806) DZR PF12773.2 gi|344210347|ref|YP_004794667.1| - 0.0013 18.4 0.4 0.0015 18.3 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|344210347|ref|YP_004794667.1| - 0.008 15.8 6.4 0.19 11.4 1.0 2.8 1 1 2 3 3 3 2 NAD-dependent DNA ligase C4 zinc finger domain Nop10p PF04135.7 gi|344210347|ref|YP_004794667.1| - 0.0096 15.6 0.3 0.014 15.1 0.2 1.2 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|344210347|ref|YP_004794667.1| - 0.016 14.3 0.3 0.025 13.7 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|344210347|ref|YP_004794667.1| - 0.029 14.0 0.6 0.056 13.1 0.4 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS91 PF14319.1 gi|344210347|ref|YP_004794667.1| - 0.032 13.7 0.1 0.034 13.6 0.0 1.0 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2072 PF09845.4 gi|344210347|ref|YP_004794667.1| - 0.055 13.4 0.5 0.089 12.7 0.4 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF35_N PF12172.3 gi|344210347|ref|YP_004794667.1| - 0.055 13.3 0.8 0.079 12.9 0.5 1.2 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|344210347|ref|YP_004794667.1| - 0.1 12.6 5.6 0.44 10.5 0.5 2.2 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.14 gi|344210347|ref|YP_004794667.1| - 0.11 12.2 1.8 0.14 11.8 1.0 1.4 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|344210347|ref|YP_004794667.1| - 0.12 11.7 4.4 0.23 10.7 0.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|344210347|ref|YP_004794667.1| - 0.12 11.9 0.6 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|344210347|ref|YP_004794667.1| - 0.14 11.9 1.9 0.18 11.5 1.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 NRDD PF13597.1 gi|344210347|ref|YP_004794667.1| - 0.21 9.6 0.6 0.19 9.7 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_2 PF13240.1 gi|344210347|ref|YP_004794667.1| - 0.81 9.2 3.1 5.6 6.5 2.2 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|344210347|ref|YP_004794667.1| - 7.4 6.6 7.5 5.9 6.9 0.9 2.2 1 1 1 2 2 2 0 zinc-finger CitMHS PF03600.11 gi|344210348|ref|YP_004794668.1| - 2.7e-41 141.3 0.0 7.6e-31 106.9 0.0 2.1 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|344210348|ref|YP_004794668.1| - 4.3e-24 83.8 3.9 2.7e-13 49.2 0.1 2.4 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|344210348|ref|YP_004794668.1| - 7.9e-23 81.0 37.5 5.1e-13 48.7 10.2 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region DUF4342 PF14242.1 gi|344210348|ref|YP_004794668.1| - 0.012 15.3 0.5 0.012 15.3 0.3 4.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4342) MCPsignal PF00015.16 gi|344210349|ref|YP_004794669.1| - 1.7e-45 155.2 37.6 1.7e-45 155.2 26.1 4.2 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344210349|ref|YP_004794669.1| - 1e-16 60.8 29.2 4e-14 52.5 0.4 6.4 6 1 0 6 6 6 2 HAMP domain WEMBL PF05701.6 gi|344210349|ref|YP_004794669.1| - 0.0003 19.3 14.9 0.0003 19.3 10.4 3.4 1 1 1 2 2 1 1 Weak chloroplast movement under blue light DUF948 PF06103.6 gi|344210349|ref|YP_004794669.1| - 0.009 15.8 3.7 0.009 15.8 2.6 6.0 5 1 1 6 6 6 2 Bacterial protein of unknown function (DUF948) DUF904 PF06005.7 gi|344210349|ref|YP_004794669.1| - 0.063 13.5 7.9 8 6.8 2.2 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF904) PSDC PF12588.3 gi|344210349|ref|YP_004794669.1| - 0.065 12.8 0.1 0.17 11.4 0.1 1.7 1 0 0 1 1 1 0 Phophatidylserine decarboxylase SPX PF03105.14 gi|344210349|ref|YP_004794669.1| - 0.14 11.8 0.7 2.9 7.6 0.4 2.7 1 1 0 1 1 1 0 SPX domain DUF3407 PF11887.3 gi|344210349|ref|YP_004794669.1| - 0.58 9.3 14.2 0.22 10.7 0.3 3.0 2 2 0 2 2 2 0 Protein of unknown function (DUF3407) AAA_27 PF13514.1 gi|344210349|ref|YP_004794669.1| - 2.1 5.9 59.1 3.9 5.0 41.0 1.3 1 0 0 1 1 1 0 AAA domain Mod_r PF07200.8 gi|344210349|ref|YP_004794669.1| - 5.1 7.0 19.5 3.7 7.4 0.0 4.5 2 1 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Spc7 PF08317.6 gi|344210349|ref|YP_004794669.1| - 6.2 5.3 30.0 1.1 7.8 2.7 4.2 1 1 4 5 5 5 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|344210349|ref|YP_004794669.1| - 6.5 6.5 28.7 1.1 9.1 1.7 5.1 1 1 1 5 5 5 0 Protein of unknown function (DUF1664) Bmp PF02608.9 gi|344210350|ref|YP_004794670.1| - 3.5e-63 213.1 0.0 4.4e-63 212.8 0.0 1.1 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_4 PF13407.1 gi|344210350|ref|YP_004794670.1| - 5.2e-05 22.7 1.0 9.4e-05 21.8 0.7 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain MCM PF00493.18 gi|344210351|ref|YP_004794671.1| - 3.1e-122 407.5 0.1 7e-100 334.0 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family LAGLIDADG_3 PF14528.1 gi|344210351|ref|YP_004794671.1| - 9e-25 86.7 0.0 3.9e-15 55.8 0.0 3.0 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|344210351|ref|YP_004794671.1| - 9.2e-22 77.3 0.0 2.2e-10 39.9 0.0 3.4 2 1 1 3 3 3 2 Intein splicing domain MCM_N PF14551.1 gi|344210351|ref|YP_004794671.1| - 7.6e-19 68.3 0.3 3.6e-18 66.2 0.1 2.4 2 0 0 2 2 1 1 MCM N-terminal domain HTH_31 PF13560.1 gi|344210351|ref|YP_004794671.1| - 6.2e-10 39.1 0.4 6.2e-10 39.1 0.3 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|344210351|ref|YP_004794671.1| - 4.2e-09 36.0 0.0 1e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Mg_chelatase PF01078.16 gi|344210351|ref|YP_004794671.1| - 6.9e-08 31.8 0.0 1.5e-05 24.2 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_19 PF12844.2 gi|344210351|ref|YP_004794671.1| - 2.5e-07 30.6 0.0 5.7e-06 26.2 0.0 2.9 2 0 0 2 2 2 1 Helix-turn-helix domain Hint PF01079.15 gi|344210351|ref|YP_004794671.1| - 0.0014 17.8 0.1 0.02 14.0 0.0 2.2 2 0 0 2 2 2 1 Hint module AAA_5 PF07728.9 gi|344210351|ref|YP_004794671.1| - 0.0034 17.1 0.0 0.42 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|344210351|ref|YP_004794671.1| - 0.0083 15.6 0.0 0.22 11.0 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF3987 PF13148.1 gi|344210351|ref|YP_004794671.1| - 0.011 14.2 0.0 0.088 11.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) Zn-ribbon_8 PF09723.5 gi|344210351|ref|YP_004794671.1| - 0.85 9.6 2.3 1.9 8.4 1.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain GrpE PF01025.14 gi|344210354|ref|YP_004794674.1| - 0.14 11.6 1.0 0.15 11.5 0.3 1.4 2 0 0 2 2 2 0 GrpE Nop25 PF09805.4 gi|344210354|ref|YP_004794674.1| - 0.62 10.1 6.5 0.95 9.5 4.5 1.2 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) Cytochrom_B562 PF07361.6 gi|344210355|ref|YP_004794675.1| - 0.12 12.8 0.1 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 Cytochrome b562 BON PF04972.12 gi|344210355|ref|YP_004794675.1| - 0.14 11.9 0.3 0.14 11.9 0.2 2.4 3 0 0 3 3 3 0 BON domain CbiA PF01656.18 gi|344210356|ref|YP_004794676.1| - 4.8e-20 71.8 0.5 7e-19 68.0 0.4 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344210356|ref|YP_004794676.1| - 1e-07 32.0 0.0 3.5e-07 30.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|344210356|ref|YP_004794676.1| - 2e-07 30.6 0.5 0.014 14.7 0.0 3.0 3 0 0 3 3 3 3 YhjQ protein ParA PF10609.4 gi|344210356|ref|YP_004794676.1| - 3.7e-05 23.5 0.0 6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_25 PF13481.1 gi|344210356|ref|YP_004794676.1| - 0.00031 20.1 0.2 0.00079 18.8 0.1 1.6 1 1 1 2 2 2 1 AAA domain MipZ PF09140.6 gi|344210356|ref|YP_004794676.1| - 0.00035 19.7 0.1 0.28 10.2 0.0 2.1 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|344210356|ref|YP_004794676.1| - 0.00087 18.4 0.0 0.0019 17.2 0.1 1.5 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|344210356|ref|YP_004794676.1| - 0.0037 18.0 0.1 0.02 15.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|344210356|ref|YP_004794676.1| - 0.0063 15.7 0.0 0.26 10.4 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family GFO_IDH_MocA PF01408.17 gi|344210356|ref|YP_004794676.1| - 0.074 13.5 0.0 0.2 12.1 0.0 1.8 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold RNA_helicase PF00910.17 gi|344210356|ref|YP_004794676.1| - 0.11 12.7 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|344210356|ref|YP_004794676.1| - 0.18 12.1 0.0 0.4 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain TFIIB PF00382.14 gi|344210357|ref|YP_004794677.1| - 3.8e-34 116.3 1.7 1.7e-17 62.9 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344210357|ref|YP_004794677.1| - 1.7e-09 36.8 3.3 4.4e-09 35.5 2.3 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding HARE-HTH PF05066.8 gi|344210357|ref|YP_004794677.1| - 0.029 14.6 0.0 0.21 11.9 0.0 2.1 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain zinc-ribbons_6 PF07191.7 gi|344210357|ref|YP_004794677.1| - 0.055 13.2 0.4 0.11 12.3 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|344210357|ref|YP_004794677.1| - 0.094 12.5 1.0 0.2 11.5 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon FMN_red PF03358.10 gi|344210360|ref|YP_004794680.1| - 8.8e-29 99.9 0.0 1.1e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|344210360|ref|YP_004794680.1| - 1.6e-06 27.8 0.0 2.5e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold OsmC PF02566.14 gi|344210361|ref|YP_004794681.1| - 2.1 8.5 4.8 5.9 7.1 3.3 1.7 1 1 0 1 1 1 0 OsmC-like protein Rieske PF00355.21 gi|344210362|ref|YP_004794682.1| - 2e-07 30.4 0.2 3.4e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain NHL PF01436.16 gi|344210362|ref|YP_004794682.1| - 0.11 12.5 0.2 12 6.1 0.0 2.7 2 0 0 2 2 2 0 NHL repeat MatE PF01554.13 gi|344210363|ref|YP_004794683.1| - 1.2e-57 194.1 31.5 1.1e-34 119.4 10.0 2.9 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|344210363|ref|YP_004794683.1| - 2.7e-05 23.9 16.4 2.7e-05 23.9 11.3 4.1 4 2 0 4 4 4 1 Polysaccharide biosynthesis C-terminal domain TetR_C_6 PF13977.1 gi|344210364|ref|YP_004794684.1| - 2.6e-13 49.9 0.1 5.9e-13 48.8 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|344210364|ref|YP_004794684.1| - 4.6e-11 42.1 0.0 8.3e-11 41.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_4 PF08359.6 gi|344210364|ref|YP_004794684.1| - 0.014 15.3 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region UPF0122 PF04297.9 gi|344210364|ref|YP_004794684.1| - 0.094 12.7 0.1 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like AsnC_trans_reg PF01037.16 gi|344210365|ref|YP_004794685.1| - 1.1e-12 47.5 0.1 1.7e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|344210365|ref|YP_004794685.1| - 7.8e-10 37.9 0.2 1.7e-09 36.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344210365|ref|YP_004794685.1| - 5.4e-07 29.0 0.2 8.5e-07 28.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|344210365|ref|YP_004794685.1| - 7.6e-07 28.6 0.0 1.2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|344210365|ref|YP_004794685.1| - 1.1e-05 25.1 0.0 2.7e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|344210365|ref|YP_004794685.1| - 8.5e-05 22.1 0.0 0.00018 21.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|344210365|ref|YP_004794685.1| - 0.0019 17.8 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|344210365|ref|YP_004794685.1| - 0.0073 15.8 0.1 0.016 14.7 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|344210365|ref|YP_004794685.1| - 0.0087 15.7 0.0 0.029 14.0 0.0 1.8 2 0 0 2 2 2 1 MarR family GntR PF00392.16 gi|344210365|ref|YP_004794685.1| - 0.012 15.0 0.0 0.028 13.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|344210365|ref|YP_004794685.1| - 0.018 15.0 0.0 0.06 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|344210365|ref|YP_004794685.1| - 0.021 14.4 0.1 0.066 12.7 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_36 PF13730.1 gi|344210365|ref|YP_004794685.1| - 0.057 13.5 0.0 0.096 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344210365|ref|YP_004794685.1| - 0.076 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2042 PF09743.4 gi|344210365|ref|YP_004794685.1| - 0.096 11.9 0.0 0.18 11.0 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) Pneumo_matrix PF03393.11 gi|344210365|ref|YP_004794685.1| - 0.11 11.4 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus matrix protein Cdc6_C PF09079.6 gi|344210365|ref|YP_004794685.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.7 1 1 0 1 1 1 0 CDC6, C terminal HTH_41 PF14502.1 gi|344210365|ref|YP_004794685.1| - 0.14 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Gln-synt_C PF00120.19 gi|344210366|ref|YP_004794686.1| - 9.2e-105 349.4 0.0 1.2e-104 349.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|344210366|ref|YP_004794686.1| - 1e-28 98.7 0.1 2.3e-28 97.5 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|344210367|ref|YP_004794687.1| - 1.6e-16 60.1 6.8 1.6e-16 60.1 4.7 2.7 2 1 2 4 4 4 1 PAP2 superfamily PAP2_3 PF14378.1 gi|344210367|ref|YP_004794687.1| - 1.1e-05 25.0 3.7 2.7e-05 23.7 2.6 1.7 1 1 0 1 1 1 1 PAP2 superfamily Virul_fac_BrkB PF03631.10 gi|344210368|ref|YP_004794688.1| - 1.5e-42 145.7 21.8 1.5e-42 145.7 15.1 2.1 2 0 0 2 2 2 1 Virulence factor BrkB APT PF03440.9 gi|344210368|ref|YP_004794688.1| - 0.029 14.0 1.3 1.7 8.4 0.1 3.2 2 1 1 3 3 3 0 Aerolysin/Pertussis toxin (APT) domain DUF2207 PF09972.4 gi|344210368|ref|YP_004794688.1| - 0.033 12.7 0.2 0.18 10.3 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) IncA PF04156.9 gi|344210368|ref|YP_004794688.1| - 0.2 11.2 0.0 0.2 11.2 0.0 3.1 4 0 0 4 4 4 0 IncA protein Metal_resist PF13801.1 gi|344210368|ref|YP_004794688.1| - 1.4 8.9 7.3 0.17 11.8 1.5 2.2 2 1 0 2 2 2 0 Heavy-metal resistance MatE PF01554.13 gi|344210369|ref|YP_004794689.1| - 7.7e-48 162.1 21.8 6.5e-26 90.8 1.9 2.7 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|344210369|ref|YP_004794689.1| - 2.3e-10 40.4 9.1 2.3e-10 40.4 6.3 4.5 4 2 1 6 6 6 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|344210369|ref|YP_004794689.1| - 8e-09 34.4 6.0 4.1e-08 32.0 2.7 2.4 2 0 0 2 2 2 1 MviN-like protein DUF3341 PF11821.3 gi|344210369|ref|YP_004794689.1| - 0.041 13.3 0.4 0.041 13.3 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) TRM PF02005.11 gi|344210371|ref|YP_004794691.1| - 3.3e-93 312.6 0.0 3.8e-93 312.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|344210371|ref|YP_004794691.1| - 0.00015 21.7 0.4 0.00029 20.8 0.3 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344210371|ref|YP_004794691.1| - 0.00031 20.1 0.0 0.00066 19.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain HATPase_c PF02518.21 gi|344210372|ref|YP_004794692.1| - 1.3e-16 60.2 0.1 3e-16 59.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|344210372|ref|YP_004794692.1| - 3.1e-11 43.0 0.1 8.2e-10 38.4 0.0 2.4 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|344210372|ref|YP_004794692.1| - 3.5e-09 36.6 1.3 1.1e-07 31.8 0.2 2.9 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|344210372|ref|YP_004794692.1| - 2.1e-07 31.2 0.1 8.2e-06 26.1 0.0 2.9 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|344210372|ref|YP_004794692.1| - 1.4e-06 28.0 1.1 3.4e-06 26.8 0.1 2.0 1 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|344210372|ref|YP_004794692.1| - 2.3e-06 27.2 0.2 4.8e-05 23.0 0.0 2.6 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|344210372|ref|YP_004794692.1| - 0.0049 16.5 0.0 0.0099 15.5 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_7 PF12860.2 gi|344210372|ref|YP_004794692.1| - 0.058 13.4 0.0 23 5.0 0.0 3.1 3 0 0 3 3 3 0 PAS fold SWIM PF04434.12 gi|344210373|ref|YP_004794693.1| - 0.07 12.6 2.4 0.31 10.5 1.7 1.9 1 1 0 1 1 1 0 SWIM zinc finger ADC PF06314.6 gi|344210374|ref|YP_004794694.1| - 3.6e-19 69.0 0.1 5.4e-19 68.4 0.1 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) adh_short PF00106.20 gi|344210375|ref|YP_004794695.1| - 3.3e-31 108.4 1.2 5.2e-31 107.8 0.8 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344210375|ref|YP_004794695.1| - 8.4e-19 68.2 0.0 1e-18 67.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344210375|ref|YP_004794695.1| - 2.4e-13 50.1 1.1 1.5e-12 47.5 0.7 2.0 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344210375|ref|YP_004794695.1| - 3.4e-06 26.6 0.0 8.4e-06 25.3 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|344210375|ref|YP_004794695.1| - 1.4e-05 25.1 1.0 2.7e-05 24.2 0.6 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|344210375|ref|YP_004794695.1| - 0.00041 19.3 0.1 0.00062 18.7 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain DUF1737 PF08410.5 gi|344210375|ref|YP_004794695.1| - 0.012 15.3 0.0 0.046 13.4 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1737) GATase PF00117.23 gi|344210376|ref|YP_004794696.1| - 6.3e-33 113.8 0.0 7.2e-33 113.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|344210376|ref|YP_004794696.1| - 3.5e-10 39.6 0.0 6.7e-10 38.7 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|344210376|ref|YP_004794696.1| - 5.7e-08 32.6 0.0 6.1e-07 29.2 0.0 2.0 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|344210376|ref|YP_004794696.1| - 8.3e-06 25.3 0.2 5e-05 22.8 0.2 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|344210376|ref|YP_004794696.1| - 6.1e-05 22.5 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family CLP_protease PF00574.18 gi|344210377|ref|YP_004794697.1| - 0.016 14.8 0.1 0.02 14.5 0.1 1.1 1 0 0 1 1 1 0 Clp protease UDG PF03167.14 gi|344210378|ref|YP_004794698.1| - 8.5e-36 122.7 0.0 1.1e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribonuc_L-PSP PF01042.16 gi|344210379|ref|YP_004794699.1| - 1.7e-20 72.9 0.1 1.9e-20 72.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Histone_HNS PF00816.16 gi|344210379|ref|YP_004794699.1| - 0.077 13.5 0.0 0.098 13.1 0.0 1.2 1 0 0 1 1 1 0 H-NS histone family DUF99 PF01949.11 gi|344210380|ref|YP_004794700.1| - 3.4e-42 143.6 0.0 3.7e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 GvpG PF05120.7 gi|344210381|ref|YP_004794701.1| - 0.23 11.2 4.4 0.37 10.6 3.0 1.5 1 1 0 1 1 1 0 Gas vesicle protein G Lactamase_B PF00753.22 gi|344210382|ref|YP_004794702.1| - 1.4e-17 64.0 6.3 1.4e-17 64.0 4.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344210382|ref|YP_004794702.1| - 0.00057 19.4 1.8 0.0011 18.5 1.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF687 PF05095.7 gi|344210382|ref|YP_004794702.1| - 0.0036 15.7 0.0 0.0051 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF687) Lactamase_B_3 PF13483.1 gi|344210382|ref|YP_004794702.1| - 0.013 15.2 1.9 0.02 14.6 1.3 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain IclR PF01614.13 gi|344210383|ref|YP_004794703.1| - 0.028 14.1 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial transcriptional regulator GAF_3 PF13492.1 gi|344210383|ref|YP_004794703.1| - 0.076 13.1 1.5 1.5 8.8 0.1 2.6 2 1 0 2 2 2 0 GAF domain Ribosomal_L40e PF01020.12 gi|344210384|ref|YP_004794704.1| - 3.2e-06 26.6 4.0 3.8e-06 26.3 2.8 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-DHHC PF01529.15 gi|344210384|ref|YP_004794704.1| - 0.00043 19.7 1.0 0.00044 19.7 0.7 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase DZR PF12773.2 gi|344210384|ref|YP_004794704.1| - 0.00096 18.9 2.6 0.0011 18.6 1.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344210384|ref|YP_004794704.1| - 0.008 15.6 2.4 0.011 15.2 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Toxin_5 PF05294.8 gi|344210384|ref|YP_004794704.1| - 0.031 14.4 2.7 0.04 14.1 1.9 1.2 1 0 0 1 1 1 0 Scorpion short toxin zf-ribbon_3 PF13248.1 gi|344210384|ref|YP_004794704.1| - 0.099 11.8 1.8 0.13 11.4 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|344210384|ref|YP_004794704.1| - 0.23 10.9 5.6 0.46 10.0 3.9 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|344210384|ref|YP_004794704.1| - 0.7 9.0 4.4 1.3 8.2 3.1 1.5 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Ribosomal_L37e PF01907.14 gi|344210384|ref|YP_004794704.1| - 0.9 9.3 5.2 1.3 8.9 3.6 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|344210384|ref|YP_004794704.1| - 3.2 7.5 5.7 1.8 8.2 0.9 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit MR_MLE_C PF13378.1 gi|344210385|ref|YP_004794705.1| - 1.5e-05 24.9 0.0 3.2e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF367 PF04034.8 gi|344210386|ref|YP_004794706.1| - 8.8e-45 151.4 0.0 1.1e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|344210386|ref|YP_004794706.1| - 1.5e-07 30.8 0.0 2.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AhpC-TSA PF00578.16 gi|344210387|ref|YP_004794707.1| - 6.8e-27 93.6 0.0 1.4e-26 92.6 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344210387|ref|YP_004794707.1| - 4.5e-18 65.1 0.0 8.1e-18 64.3 0.0 1.4 1 0 0 1 1 1 1 Redoxin DUF1771 PF08590.5 gi|344210387|ref|YP_004794707.1| - 2.7 8.0 9.4 0.21 11.6 0.4 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1771) SnoaL_2 PF12680.2 gi|344210388|ref|YP_004794708.1| - 2.3e-10 40.8 0.9 3.1e-10 40.3 0.6 1.2 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|344210388|ref|YP_004794708.1| - 6.7e-09 35.7 0.2 8.1e-09 35.4 0.2 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|344210388|ref|YP_004794708.1| - 2.5e-05 24.4 0.2 3.1e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) NTF2 PF02136.15 gi|344210388|ref|YP_004794708.1| - 0.00028 21.2 0.0 0.00031 21.0 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL PF07366.7 gi|344210388|ref|YP_004794708.1| - 0.00088 18.8 0.1 0.00099 18.6 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_3 PF13474.1 gi|344210388|ref|YP_004794708.1| - 0.0056 16.7 0.0 0.0083 16.1 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain Methyltransf_11 PF08241.7 gi|344210389|ref|YP_004794709.1| - 1.1e-10 41.9 0.0 1.8e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344210389|ref|YP_004794709.1| - 2.8e-10 40.7 0.1 6.1e-10 39.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344210389|ref|YP_004794709.1| - 3.8e-09 36.4 0.0 6.1e-09 35.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344210389|ref|YP_004794709.1| - 4.3e-08 33.4 0.0 8.2e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210389|ref|YP_004794709.1| - 8.8e-07 28.6 0.0 2.2e-06 27.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344210389|ref|YP_004794709.1| - 1.2e-05 25.2 3.6 1.8e-05 24.7 1.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|344210389|ref|YP_004794709.1| - 2e-05 23.8 0.0 3.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|344210389|ref|YP_004794709.1| - 5.8e-05 23.4 0.0 0.00018 21.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain TPMT PF05724.6 gi|344210389|ref|YP_004794709.1| - 0.00043 19.7 0.0 0.0007 19.0 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.9 gi|344210389|ref|YP_004794709.1| - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain SAM_MT PF04445.8 gi|344210389|ref|YP_004794709.1| - 0.018 14.2 0.3 0.027 13.6 0.2 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase PrmA PF06325.8 gi|344210389|ref|YP_004794709.1| - 0.046 12.8 0.2 0.062 12.4 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) TrkA_N PF02254.13 gi|344210389|ref|YP_004794709.1| - 0.15 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain tRNA-synt_2b PF00587.20 gi|344210390|ref|YP_004794710.1| - 2e-35 121.9 0.0 3e-35 121.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|344210390|ref|YP_004794710.1| - 2.1e-29 101.6 6.1 3.3e-29 101.0 4.2 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|344210390|ref|YP_004794710.1| - 0.055 11.8 3.9 0.08 11.3 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) TBPIP PF07106.8 gi|344210390|ref|YP_004794710.1| - 0.079 12.5 6.4 0.13 11.8 4.5 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GreA_GreB_N PF03449.10 gi|344210390|ref|YP_004794710.1| - 0.14 12.2 9.7 0.33 11.0 6.7 1.6 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal IncA PF04156.9 gi|344210390|ref|YP_004794710.1| - 0.15 11.5 5.4 0.31 10.5 3.7 1.5 1 0 0 1 1 1 0 IncA protein Mnd1 PF03962.10 gi|344210390|ref|YP_004794710.1| - 0.18 11.4 5.7 0.29 10.7 4.0 1.2 1 0 0 1 1 1 0 Mnd1 family APG6 PF04111.7 gi|344210390|ref|YP_004794710.1| - 0.21 10.5 5.5 0.68 8.9 4.3 1.4 2 0 0 2 2 2 0 Autophagy protein Apg6 MutS_IV PF05190.13 gi|344210390|ref|YP_004794710.1| - 0.24 11.6 2.0 46 4.2 1.6 3.1 2 1 1 3 3 3 0 MutS family domain IV DUF904 PF06005.7 gi|344210390|ref|YP_004794710.1| - 0.3 11.4 11.3 1 9.6 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Atg14 PF10186.4 gi|344210390|ref|YP_004794710.1| - 0.6 9.0 4.2 0.83 8.5 2.9 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Transposase_22 PF02994.9 gi|344210390|ref|YP_004794710.1| - 0.63 8.4 5.9 0.88 7.9 4.1 1.1 1 0 0 1 1 1 0 L1 transposable element DUF972 PF06156.8 gi|344210390|ref|YP_004794710.1| - 1.2 9.4 3.7 4.4 7.7 2.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) UPF0184 PF03670.8 gi|344210390|ref|YP_004794710.1| - 2.1 8.5 8.4 3 8.0 3.1 2.7 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0184) DivIC PF04977.10 gi|344210390|ref|YP_004794710.1| - 8.3 5.9 10.4 1.8 8.0 1.0 2.4 1 1 1 2 2 2 0 Septum formation initiator Usp PF00582.21 gi|344210391|ref|YP_004794711.1| - 2e-32 112.2 4.1 2.3e-32 112.1 2.8 1.0 1 0 0 1 1 1 1 Universal stress protein family GTP-bdg_N PF13167.1 gi|344210391|ref|YP_004794711.1| - 0.00031 20.7 0.2 0.00089 19.3 0.1 1.7 1 1 1 2 2 2 1 GTP-binding GTPase N-terminal AP_endonuc_2 PF01261.19 gi|344210391|ref|YP_004794711.1| - 0.046 12.9 0.2 0.13 11.4 0.1 1.7 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel SRP54 PF00448.17 gi|344210391|ref|YP_004794711.1| - 0.051 13.0 0.2 0.099 12.0 0.1 1.5 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain DXP_reductoisom PF02670.11 gi|344210391|ref|YP_004794711.1| - 0.056 13.9 0.2 0.078 13.5 0.1 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase GARS_N PF02844.10 gi|344210391|ref|YP_004794711.1| - 0.1 13.0 0.4 0.77 10.2 0.1 1.9 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Lactamase_B PF00753.22 gi|344210392|ref|YP_004794712.1| - 8.7e-22 77.7 11.3 1.4e-21 77.0 7.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344210392|ref|YP_004794712.1| - 0.00036 20.1 0.1 0.00084 18.9 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Na_H_Exchanger PF00999.16 gi|344210393|ref|YP_004794713.1| - 4.2e-34 117.6 42.7 5.7e-34 117.2 29.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|344210393|ref|YP_004794713.1| - 5.7e-32 110.1 1.9 5.7e-32 110.1 1.3 2.1 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|344210393|ref|YP_004794713.1| - 1.7e-08 33.9 0.1 4.6e-08 32.5 0.0 1.8 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|344210393|ref|YP_004794713.1| - 5.9e-07 29.6 0.3 1.7e-06 28.2 0.2 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|344210393|ref|YP_004794713.1| - 0.00028 20.2 0.1 0.0007 18.9 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_3 PF01494.14 gi|344210393|ref|YP_004794713.1| - 0.0004 19.5 0.4 0.00075 18.6 0.3 1.4 1 1 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|344210393|ref|YP_004794713.1| - 0.00047 20.5 1.3 0.00047 20.5 0.9 4.4 3 1 1 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|344210393|ref|YP_004794713.1| - 0.00048 19.6 0.1 0.00048 19.6 0.1 3.1 4 0 0 4 4 4 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|344210393|ref|YP_004794713.1| - 0.00074 19.5 1.6 0.0025 17.8 0.8 2.1 2 0 0 2 2 2 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|344210393|ref|YP_004794713.1| - 0.00083 18.7 0.1 0.0014 18.0 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|344210393|ref|YP_004794713.1| - 0.0012 18.5 0.1 0.0012 18.5 0.1 2.9 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|344210393|ref|YP_004794713.1| - 0.003 17.8 0.0 0.0058 16.9 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain DAO PF01266.19 gi|344210393|ref|YP_004794713.1| - 0.0035 16.2 0.2 0.0063 15.4 0.2 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|344210393|ref|YP_004794713.1| - 0.0046 17.3 1.3 0.015 15.6 0.6 2.2 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Epimerase PF01370.16 gi|344210393|ref|YP_004794713.1| - 0.0051 16.2 0.2 0.01 15.3 0.1 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.10 gi|344210393|ref|YP_004794713.1| - 0.0051 16.6 0.7 0.023 14.5 0.1 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_2 PF00890.19 gi|344210393|ref|YP_004794713.1| - 0.0054 15.6 0.6 0.0054 15.6 0.4 1.7 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|344210393|ref|YP_004794713.1| - 0.0057 16.3 0.5 0.0057 16.3 0.4 2.1 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|344210393|ref|YP_004794713.1| - 0.0076 16.2 0.2 0.027 14.4 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|344210393|ref|YP_004794713.1| - 0.022 14.6 1.0 0.041 13.7 0.1 1.9 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|344210393|ref|YP_004794713.1| - 0.024 13.5 0.1 0.038 12.9 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Saccharop_dh PF03435.13 gi|344210393|ref|YP_004794713.1| - 0.031 13.2 0.2 0.031 13.2 0.2 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase Rossmann-like PF10727.4 gi|344210393|ref|YP_004794713.1| - 0.032 13.9 0.6 0.032 13.9 0.4 3.0 4 0 0 4 4 3 0 Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|344210393|ref|YP_004794713.1| - 0.077 12.1 0.2 0.077 12.1 0.1 2.6 3 0 0 3 3 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 4HBT PF03061.17 gi|344210394|ref|YP_004794714.1| - 8.3e-15 54.6 0.5 1.1e-14 54.2 0.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|344210394|ref|YP_004794714.1| - 2e-06 27.7 0.1 2.3e-06 27.5 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.1 gi|344210394|ref|YP_004794714.1| - 3e-06 27.2 0.0 4.3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) NUDIX PF00293.23 gi|344210396|ref|YP_004794716.1| - 5e-10 39.1 0.1 5.8e-10 38.9 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Thiolase_N PF00108.18 gi|344210397|ref|YP_004794717.1| - 5.1e-75 251.8 1.5 8.8e-75 251.0 1.0 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|344210397|ref|YP_004794717.1| - 8.3e-43 144.7 0.0 3.5e-42 142.7 0.0 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|344210397|ref|YP_004794717.1| - 9.1e-06 25.3 1.3 1.7e-05 24.4 0.2 1.9 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain DUF581 PF04570.9 gi|344210397|ref|YP_004794717.1| - 0.0076 15.5 0.1 0.015 14.5 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF581) DDE_Tnp_IS66 PF03050.9 gi|344210397|ref|YP_004794717.1| - 0.062 12.5 0.1 0.12 11.5 0.0 1.4 1 1 0 1 1 1 0 Transposase IS66 family ACP_syn_III PF08545.5 gi|344210397|ref|YP_004794717.1| - 0.31 10.7 2.7 2.1 8.0 0.0 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Pyridox_ox_2 PF12900.2 gi|344210398|ref|YP_004794718.1| - 8.2e-16 58.1 0.0 9.3e-16 57.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|344210398|ref|YP_004794718.1| - 2.2e-06 27.5 0.0 2.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF1508 PF07411.7 gi|344210399|ref|YP_004794719.1| - 2.1e-86 283.2 14.2 1e-17 63.2 0.3 5.6 6 0 0 6 6 6 5 Domain of unknown function (DUF1508) DUF2892 PF11127.3 gi|344210399|ref|YP_004794719.1| - 0.024 14.4 13.8 0.067 13.0 2.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Spore_III_AF PF09581.5 gi|344210399|ref|YP_004794719.1| - 0.036 13.9 0.4 0.066 13.0 0.3 1.4 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) DUF3748 PF12566.3 gi|344210399|ref|YP_004794719.1| - 0.054 13.4 2.3 3.4 7.5 0.0 3.8 4 1 1 5 5 5 0 Protein of unknown function (DUF3748) Tetraspannin PF00335.15 gi|344210399|ref|YP_004794719.1| - 0.46 9.7 3.8 0.36 10.0 0.3 2.1 1 1 2 3 3 3 0 Tetraspanin family Ycf1 PF05758.7 gi|344210399|ref|YP_004794719.1| - 0.56 7.8 0.9 0.72 7.4 0.7 1.1 1 0 0 1 1 1 0 Ycf1 RR_TM4-6 PF06459.7 gi|344210399|ref|YP_004794719.1| - 7.3 6.3 10.8 13 5.5 7.5 1.3 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 APG6 PF04111.7 gi|344210399|ref|YP_004794719.1| - 9.1 5.2 9.1 13 4.7 6.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 AAA PF00004.24 gi|344210400|ref|YP_004794720.1| - 7.1e-39 133.0 0.0 1.6e-38 131.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|344210400|ref|YP_004794720.1| - 1.7e-06 28.8 3.8 6.2e-06 27.0 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|344210400|ref|YP_004794720.1| - 2.2e-06 27.4 0.0 2e-05 24.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|344210400|ref|YP_004794720.1| - 3.5e-05 23.9 0.3 0.0021 18.2 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|344210400|ref|YP_004794720.1| - 4.3e-05 23.5 5.6 0.00068 19.6 2.3 3.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|344210400|ref|YP_004794720.1| - 9.4e-05 22.7 0.7 0.0012 19.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|344210400|ref|YP_004794720.1| - 0.00014 21.7 0.0 0.00041 20.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|344210400|ref|YP_004794720.1| - 0.00042 20.3 0.2 0.0032 17.4 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|344210400|ref|YP_004794720.1| - 0.00093 18.3 0.0 0.0017 17.4 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MMR_HSR1 PF01926.18 gi|344210400|ref|YP_004794720.1| - 0.002 18.0 0.0 0.007 16.3 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|344210400|ref|YP_004794720.1| - 0.0028 17.0 0.0 0.0075 15.6 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|344210400|ref|YP_004794720.1| - 0.0032 16.9 1.3 0.028 13.8 0.0 2.9 1 1 2 3 3 3 1 AAA domain TIP49 PF06068.8 gi|344210400|ref|YP_004794720.1| - 0.0035 16.1 0.0 0.0064 15.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|344210400|ref|YP_004794720.1| - 0.0037 16.2 0.1 0.0061 15.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|344210400|ref|YP_004794720.1| - 0.0044 16.9 1.1 0.0075 16.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.1 gi|344210400|ref|YP_004794720.1| - 0.0046 16.9 0.0 0.028 14.4 0.0 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain Cytidylate_kin2 PF13189.1 gi|344210400|ref|YP_004794720.1| - 0.0056 16.6 0.0 0.017 15.0 0.0 1.8 1 0 0 1 1 1 1 Cytidylate kinase-like family AAA_19 PF13245.1 gi|344210400|ref|YP_004794720.1| - 0.0077 15.9 0.0 0.018 14.7 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain SKI PF01202.17 gi|344210400|ref|YP_004794720.1| - 0.0078 16.0 0.0 0.024 14.5 0.0 1.9 1 0 0 1 1 1 1 Shikimate kinase Mg_chelatase PF01078.16 gi|344210400|ref|YP_004794720.1| - 0.014 14.5 0.0 0.025 13.7 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|344210400|ref|YP_004794720.1| - 0.02 15.1 0.0 0.051 13.8 0.0 1.7 1 0 0 1 1 1 0 ABC transporter ResIII PF04851.10 gi|344210400|ref|YP_004794720.1| - 0.031 14.1 0.0 0.053 13.3 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_3 PF07726.6 gi|344210400|ref|YP_004794720.1| - 0.034 13.7 0.0 0.077 12.5 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|344210400|ref|YP_004794720.1| - 0.034 13.7 0.0 0.059 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|344210400|ref|YP_004794720.1| - 0.04 13.5 0.0 2.1 7.9 0.0 2.3 1 1 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|344210400|ref|YP_004794720.1| - 0.041 13.7 0.2 0.12 12.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|344210400|ref|YP_004794720.1| - 0.05 13.7 0.0 0.095 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|344210400|ref|YP_004794720.1| - 0.076 12.0 0.0 0.19 10.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.1 gi|344210400|ref|YP_004794720.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain CFTR_R PF14396.1 gi|344210401|ref|YP_004794721.1| - 0.077 12.3 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain Lactamase_B_2 PF12706.2 gi|344210402|ref|YP_004794722.1| - 5.1e-17 62.0 0.5 7.7e-17 61.4 0.4 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|344210402|ref|YP_004794722.1| - 3e-05 23.7 6.8 4.8e-05 23.1 4.6 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily CoA_transf_3 PF02515.12 gi|344210403|ref|YP_004794723.1| - 0.011 14.9 0.9 0.012 14.8 0.6 1.2 1 0 0 1 1 1 0 CoA-transferase family III DUF533 PF04391.7 gi|344210403|ref|YP_004794723.1| - 0.075 12.4 1.7 0.11 11.8 1.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF533) DUF3325 PF11804.3 gi|344210403|ref|YP_004794723.1| - 0.13 12.2 1.8 0.15 11.9 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Tannase PF07519.6 gi|344210404|ref|YP_004794724.1| - 0.0087 14.8 0.0 0.011 14.5 0.0 1.1 1 0 0 1 1 1 1 Tannase and feruloyl esterase HTH_20 PF12840.2 gi|344210406|ref|YP_004794726.1| - 9.8e-06 25.2 0.0 2.3e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain zinc_ribbon_6 PF14599.1 gi|344210406|ref|YP_004794726.1| - 1.1 9.0 0.0 1.1 9.0 0.0 2.9 2 1 1 3 3 3 0 Zinc-ribbon Zn_Tnp_IS1595 PF12760.2 gi|344210406|ref|YP_004794726.1| - 1.4 8.7 10.5 0.42 10.4 2.7 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain IBR PF01485.16 gi|344210406|ref|YP_004794726.1| - 2 8.3 8.9 24 4.9 0.0 2.4 2 0 0 2 2 2 0 IBR domain PhnA_Zn_Ribbon PF08274.7 gi|344210406|ref|YP_004794726.1| - 7.9 6.3 9.3 6.3 6.6 0.1 3.4 3 0 0 3 3 3 0 PhnA Zinc-Ribbon GTP_EFTU PF00009.22 gi|344210407|ref|YP_004794727.1| - 3e-41 140.9 0.2 4.3e-41 140.4 0.2 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|344210407|ref|YP_004794727.1| - 4.6e-26 90.7 0.0 7.8e-26 89.9 0.0 1.4 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal MMR_HSR1 PF01926.18 gi|344210407|ref|YP_004794727.1| - 0.0011 18.8 0.0 0.0021 17.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D2 PF03144.20 gi|344210407|ref|YP_004794727.1| - 0.0017 18.4 1.0 0.0051 16.9 0.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|344210407|ref|YP_004794727.1| - 0.0055 16.2 0.4 0.047 13.1 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|344210407|ref|YP_004794727.1| - 0.0056 15.9 0.3 2.1 7.5 0.1 2.5 2 1 0 2 2 2 2 Ferrous iron transport protein B Miro PF08477.8 gi|344210407|ref|YP_004794727.1| - 0.048 14.1 0.0 0.16 12.4 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|344210407|ref|YP_004794727.1| - 0.055 12.6 0.1 1.4 8.1 0.1 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.18 gi|344210407|ref|YP_004794727.1| - 0.096 12.4 0.1 0.4 10.4 0.1 2.3 1 1 0 1 1 1 0 Dynamin family Fcf1 PF04900.7 gi|344210408|ref|YP_004794728.1| - 4.5e-06 26.6 0.0 5.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|344210408|ref|YP_004794728.1| - 7.5e-06 25.4 0.5 1e-05 24.9 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.1 gi|344210408|ref|YP_004794728.1| - 0.0083 16.7 5.0 0.0083 16.7 3.4 1.9 1 1 1 2 2 2 1 PIN domain PIN_4 PF13638.1 gi|344210408|ref|YP_004794728.1| - 0.028 14.5 0.0 0.1 12.7 0.0 1.8 1 1 0 1 1 1 0 PIN domain PIN PF01850.16 gi|344210408|ref|YP_004794728.1| - 0.099 12.9 0.9 0.28 11.5 0.7 1.6 1 1 1 2 2 2 0 PIN domain DUF1471 PF07338.8 gi|344210408|ref|YP_004794728.1| - 2 8.1 5.3 0.69 9.5 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) S1 PF00575.18 gi|344210409|ref|YP_004794729.1| - 1.7e-14 53.6 0.2 3.3e-14 52.7 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.12 gi|344210409|ref|YP_004794729.1| - 2.5e-13 49.9 0.0 4.1e-13 49.2 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 Spt4 PF06093.8 gi|344210410|ref|YP_004794730.1| - 8.9e-13 47.9 0.1 1.1e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger Nudix_N_2 PF14803.1 gi|344210410|ref|YP_004794730.1| - 0.31 10.7 5.9 0.77 9.4 0.8 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF359 PF04019.7 gi|344210411|ref|YP_004794731.1| - 9e-38 128.3 0.0 1.2e-37 128.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) HisKA PF00512.20 gi|344210411|ref|YP_004794731.1| - 0.003 17.5 1.3 0.16 11.9 0.1 2.6 2 1 0 2 2 2 2 His Kinase A (phospho-acceptor) domain UBA_4 PF14555.1 gi|344210411|ref|YP_004794731.1| - 0.12 11.8 0.1 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain MCE PF02470.15 gi|344210411|ref|YP_004794731.1| - 0.14 12.2 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 mce related protein UPF0020 PF01170.13 gi|344210412|ref|YP_004794732.1| - 3.6e-25 88.5 0.0 4.7e-24 84.9 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|344210412|ref|YP_004794732.1| - 8.3e-08 32.2 0.1 8.3e-08 32.2 0.1 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344210412|ref|YP_004794732.1| - 0.00069 20.1 1.0 0.0016 19.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210412|ref|YP_004794732.1| - 0.0012 18.4 0.0 0.0029 17.2 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|344210412|ref|YP_004794732.1| - 0.003 17.4 0.0 0.0044 16.8 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.7 gi|344210412|ref|YP_004794732.1| - 0.0039 17.6 0.0 0.013 15.9 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344210412|ref|YP_004794732.1| - 0.022 15.0 0.0 0.2 12.0 0.0 2.4 2 0 0 2 2 2 0 Methyltransferase domain DHBP_synthase PF00926.14 gi|344210412|ref|YP_004794732.1| - 0.067 12.4 0.1 0.9 8.7 0.0 2.5 2 1 1 3 3 3 0 3,4-dihydroxy-2-butanone 4-phosphate synthase Cons_hypoth95 PF03602.10 gi|344210412|ref|YP_004794732.1| - 0.092 12.1 0.0 0.29 10.5 0.0 1.8 1 1 0 1 1 1 0 Conserved hypothetical protein 95 N6_Mtase PF02384.11 gi|344210412|ref|YP_004794732.1| - 0.12 11.4 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase DUF1212 PF06738.7 gi|344210413|ref|YP_004794733.1| - 8.1 5.8 11.4 45 3.4 7.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) HisG PF01634.13 gi|344210415|ref|YP_004794735.1| - 2.5e-49 166.9 0.2 4.4e-49 166.2 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|344210415|ref|YP_004794735.1| - 2.2e-25 88.3 0.1 4.8e-25 87.2 0.1 1.6 2 0 0 2 2 2 1 HisG, C-terminal domain MFS_1 PF07690.11 gi|344210416|ref|YP_004794736.1| - 2.2e-42 145.0 51.9 5.7e-31 107.5 18.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|344210416|ref|YP_004794736.1| - 8e-07 27.7 13.3 2.5e-06 26.1 2.3 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|344210416|ref|YP_004794736.1| - 0.0015 18.2 4.3 0.6 9.9 0.1 3.3 3 0 0 3 3 3 2 MFS_1 like family Sugar_tr PF00083.19 gi|344210416|ref|YP_004794736.1| - 0.0025 16.4 21.0 0.041 12.4 5.5 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter UNC-93 PF05978.11 gi|344210416|ref|YP_004794736.1| - 0.0037 16.7 5.8 0.038 13.4 1.0 2.4 2 0 0 2 2 2 2 Ion channel regulatory protein UNC-93 LacY_symp PF01306.14 gi|344210416|ref|YP_004794736.1| - 0.31 9.5 8.1 0.81 8.1 0.1 2.5 2 1 1 3 3 3 0 LacY proton/sugar symporter Amidohydro_1 PF01979.15 gi|344210417|ref|YP_004794737.1| - 3.7e-47 161.5 4.8 4.8e-47 161.2 3.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|344210417|ref|YP_004794737.1| - 1.1e-09 38.7 19.2 3.5e-09 37.1 13.3 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|344210417|ref|YP_004794737.1| - 2.2e-08 33.7 0.6 7.9e-08 32.0 0.1 2.2 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|344210417|ref|YP_004794737.1| - 1.1e-07 31.4 16.6 3.2e-06 26.6 7.2 2.3 1 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|344210417|ref|YP_004794737.1| - 1.4e-05 24.2 0.0 2.8e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase MG1 PF11974.3 gi|344210418|ref|YP_004794738.1| - 0.012 16.1 3.1 0.024 15.1 2.1 1.6 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain AdoHcyase PF05221.12 gi|344210419|ref|YP_004794739.1| - 4.4e-51 173.3 0.1 4.9e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|344210419|ref|YP_004794739.1| - 1.6e-48 164.6 1.6 1.8e-48 164.4 0.2 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|344210419|ref|YP_004794739.1| - 2.1e-10 40.0 0.1 3.7e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|344210419|ref|YP_004794739.1| - 2.3e-05 23.8 0.7 4.1e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|344210419|ref|YP_004794739.1| - 0.0026 17.3 0.1 0.0042 16.7 0.1 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.12 gi|344210419|ref|YP_004794739.1| - 0.0054 17.1 0.1 0.014 15.8 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|344210419|ref|YP_004794739.1| - 0.0066 16.4 0.1 0.015 15.2 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Hexapep PF00132.19 gi|344210420|ref|YP_004794740.1| - 9.3e-17 59.7 13.5 3.4e-10 38.9 2.9 4.0 2 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344210420|ref|YP_004794740.1| - 1.1e-09 37.6 12.8 1.7e-08 33.8 2.7 3.8 3 2 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|344210420|ref|YP_004794740.1| - 0.026 13.0 0.1 0.052 12.1 0.0 1.5 1 1 1 2 2 2 0 L-fucokinase DNA_primase_lrg PF04104.9 gi|344210422|ref|YP_004794742.1| - 5.7e-38 130.6 0.0 1.2e-37 129.5 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Bax1-I PF01027.15 gi|344210423|ref|YP_004794743.1| - 0.0039 16.8 1.4 0.0049 16.4 1.0 1.1 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF621 PF04789.10 gi|344210423|ref|YP_004794743.1| - 0.034 13.1 0.1 0.037 13.0 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF621) PRA1 PF03208.14 gi|344210423|ref|YP_004794743.1| - 0.058 12.7 1.0 0.069 12.4 0.7 1.0 1 0 0 1 1 1 0 PRA1 family protein PIRT PF15099.1 gi|344210423|ref|YP_004794743.1| - 0.1 11.8 0.9 0.1 11.7 0.6 1.1 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family Tad PF13400.1 gi|344210423|ref|YP_004794743.1| - 0.27 11.3 5.9 3.6 7.6 0.4 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Tetraspannin PF00335.15 gi|344210423|ref|YP_004794743.1| - 0.48 9.6 3.6 0.58 9.3 2.5 1.0 1 0 0 1 1 1 0 Tetraspanin family MMPL PF03176.10 gi|344210423|ref|YP_004794743.1| - 0.52 8.9 6.0 0.57 8.8 4.2 1.0 1 0 0 1 1 1 0 MMPL family SWIM PF04434.12 gi|344210424|ref|YP_004794744.1| - 1.6e-05 24.2 0.1 3.8e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 SWIM zinc finger Nudix_N_2 PF14803.1 gi|344210424|ref|YP_004794744.1| - 0.06 13.0 0.1 0.06 13.0 0.1 2.7 2 1 1 3 3 3 0 Nudix N-terminal Ribosomal_S27 PF01599.14 gi|344210424|ref|YP_004794744.1| - 0.22 11.3 3.6 0.44 10.3 1.9 1.9 1 1 1 2 2 2 0 Ribosomal protein S27a Hjc PF01870.13 gi|344210425|ref|YP_004794745.1| - 4.1e-27 93.6 0.0 5.6e-27 93.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF4382 PF14321.1 gi|344210426|ref|YP_004794746.1| - 1.8e-17 63.7 4.7 6.3e-15 55.4 0.1 2.4 2 1 1 3 3 3 2 Domain of unknown function (DUF4382) TAT_signal PF10518.4 gi|344210426|ref|YP_004794746.1| - 0.63 10.1 4.1 1.2 9.3 2.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1510 PF07423.6 gi|344210426|ref|YP_004794746.1| - 0.75 9.1 20.0 0.083 12.2 3.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) DUF1673 PF07895.6 gi|344210427|ref|YP_004794747.1| - 0.02 14.4 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Ni_hydr_CYTB PF01292.15 gi|344210427|ref|YP_004794747.1| - 0.086 12.2 1.1 0.33 10.3 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic cytochrome b561 Virul_fac_BrkB PF03631.10 gi|344210427|ref|YP_004794747.1| - 0.1 11.9 12.6 0.23 10.7 8.9 1.5 1 1 0 1 1 1 0 Virulence factor BrkB Abhydrolase_6 PF12697.2 gi|344210428|ref|YP_004794748.1| - 1.7e-24 86.9 7.6 2.2e-24 86.6 5.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344210428|ref|YP_004794748.1| - 1.8e-13 50.4 0.1 5.2e-13 48.9 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344210428|ref|YP_004794748.1| - 5.7e-13 48.9 0.0 1.6e-12 47.4 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold FSH1 PF03959.8 gi|344210428|ref|YP_004794748.1| - 0.044 13.2 0.0 2.3 7.6 0.0 2.1 2 0 0 2 2 2 0 Serine hydrolase (FSH1) PCNA_N PF00705.13 gi|344210429|ref|YP_004794749.1| - 1.5e-09 37.4 0.1 2.8e-09 36.5 0.1 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|344210429|ref|YP_004794749.1| - 6.8e-05 22.7 0.0 0.00013 21.8 0.0 1.7 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DUF2993 PF11209.3 gi|344210429|ref|YP_004794749.1| - 0.022 14.6 0.1 0.058 13.3 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2993) Rad9 PF04139.8 gi|344210429|ref|YP_004794749.1| - 0.16 11.0 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 Rad9 Cu-oxidase_3 PF07732.10 gi|344210430|ref|YP_004794750.1| - 3.9e-13 49.1 0.1 7.4e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|344210430|ref|YP_004794750.1| - 4.3e-08 32.7 0.5 5.4e-06 25.9 0.0 3.1 3 1 0 3 3 3 1 Multicopper oxidase Copper-bind PF00127.15 gi|344210430|ref|YP_004794750.1| - 8.4e-05 22.7 0.6 0.002 18.3 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|344210430|ref|YP_004794750.1| - 0.0016 18.3 0.0 0.0059 16.4 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|344210430|ref|YP_004794750.1| - 0.61 10.2 3.5 1.4 9.0 2.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FtsJ PF01728.14 gi|344210431|ref|YP_004794751.1| - 5.6e-52 176.3 0.0 6.7e-52 176.1 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|344210431|ref|YP_004794751.1| - 5e-15 55.0 1.8 9.3e-15 54.1 1.3 1.5 1 0 0 1 1 1 1 TRAM domain Methyltransf_18 PF12847.2 gi|344210431|ref|YP_004794751.1| - 0.012 16.1 0.1 0.032 14.7 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344210431|ref|YP_004794751.1| - 0.014 15.4 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210431|ref|YP_004794751.1| - 0.015 14.8 0.0 0.032 13.8 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344210431|ref|YP_004794751.1| - 0.031 14.0 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NSP13 PF06460.7 gi|344210431|ref|YP_004794751.1| - 0.04 12.7 0.0 0.063 12.1 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP13 DUF165 PF02592.10 gi|344210432|ref|YP_004794752.1| - 1.4e-40 138.8 4.1 1.4e-40 138.8 2.9 1.7 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 Caps_synth_CapC PF14102.1 gi|344210432|ref|YP_004794752.1| - 8.1 6.5 10.5 0.21 11.7 1.4 2.6 2 1 1 3 3 3 0 Capsule biosynthesis CapC RHH_1 PF01402.16 gi|344210433|ref|YP_004794753.1| - 0.037 13.9 0.3 0.15 12.0 0.0 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family TatC PF00902.13 gi|344210434|ref|YP_004794754.1| - 9.2e-61 204.9 52.4 5.2e-37 127.3 10.5 3.4 3 2 0 3 3 3 2 Sec-independent protein translocase protein (TatC) Ost4 PF10215.4 gi|344210434|ref|YP_004794754.1| - 5.9 6.4 8.0 29 4.2 0.0 3.6 3 0 0 3 3 3 0 Oligosaccaryltransferase TatC PF00902.13 gi|344210435|ref|YP_004794755.1| - 8.5e-42 142.9 10.8 8.5e-42 142.9 7.5 1.5 2 0 0 2 2 2 1 Sec-independent protein translocase protein (TatC) His_Phos_1 PF00300.17 gi|344210436|ref|YP_004794756.1| - 9.4e-35 120.0 0.0 1.2e-34 119.7 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.17 gi|344210436|ref|YP_004794756.1| - 0.00045 19.6 0.4 0.00084 18.7 0.3 1.5 1 1 0 1 1 1 1 Histidine phosphatase superfamily (branch 2) Asn_synthase PF00733.16 gi|344210437|ref|YP_004794757.1| - 1.6e-10 40.9 0.5 2.8e-10 40.1 0.3 1.3 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|344210437|ref|YP_004794757.1| - 1.5e-09 36.8 0.1 4.9e-06 25.3 0.1 2.5 2 1 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|344210437|ref|YP_004794757.1| - 4.5e-09 35.5 0.0 8.6e-09 34.6 0.0 1.4 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|344210437|ref|YP_004794757.1| - 0.00023 20.5 0.0 0.00067 18.9 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|344210437|ref|YP_004794757.1| - 0.001 18.5 0.2 0.0039 16.7 0.1 2.0 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|344210437|ref|YP_004794757.1| - 0.01 14.9 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase DUF208 PF02677.9 gi|344210437|ref|YP_004794757.1| - 0.075 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 MutS_V PF00488.16 gi|344210438|ref|YP_004794758.1| - 3.5e-08 33.1 0.0 3.3e-07 29.9 0.0 2.2 2 0 0 2 2 2 1 MutS domain V HHH PF00633.18 gi|344210438|ref|YP_004794758.1| - 3.1e-06 26.5 0.9 0.0017 17.9 0.1 3.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|344210438|ref|YP_004794758.1| - 8e-05 22.7 1.1 0.00074 19.6 0.8 2.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HasA PF06438.7 gi|344210438|ref|YP_004794758.1| - 0.039 13.3 0.8 1.5 8.1 0.1 2.6 2 0 0 2 2 2 0 Heme-binding protein A (HasA) AAA_10 PF12846.2 gi|344210438|ref|YP_004794758.1| - 0.045 13.1 2.0 0.25 10.7 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain IMS_HHH PF11798.3 gi|344210438|ref|YP_004794758.1| - 0.11 12.5 0.0 0.31 11.1 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif AAA_21 PF13304.1 gi|344210438|ref|YP_004794758.1| - 0.33 10.8 0.0 20 5.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|344210439|ref|YP_004794759.1| - 1.8e-13 50.9 0.1 8.5e-12 45.4 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344210439|ref|YP_004794759.1| - 1.9e-09 37.7 0.0 4.2e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|344210439|ref|YP_004794759.1| - 1.5e-06 27.7 0.2 7.4e-06 25.5 0.0 2.3 2 0 0 2 2 2 1 CDC6, C terminal AAA PF00004.24 gi|344210439|ref|YP_004794759.1| - 1.6e-06 28.3 0.0 3.7e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|344210439|ref|YP_004794759.1| - 0.00053 19.7 0.0 0.0018 18.0 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|344210439|ref|YP_004794759.1| - 0.00097 18.8 0.1 0.0032 17.1 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_35 PF14516.1 gi|344210439|ref|YP_004794759.1| - 0.0022 16.7 0.1 0.04 12.5 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain Gtr1_RagA PF04670.7 gi|344210439|ref|YP_004794759.1| - 0.0046 16.1 0.0 0.0075 15.4 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region Sigma54_activat PF00158.21 gi|344210439|ref|YP_004794759.1| - 0.0059 16.0 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|344210439|ref|YP_004794759.1| - 0.0059 16.0 0.0 2.6 7.4 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein T2SE PF00437.15 gi|344210439|ref|YP_004794759.1| - 0.0083 15.0 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.7 gi|344210439|ref|YP_004794759.1| - 0.0091 15.6 0.0 0.021 14.4 0.0 1.7 1 0 0 1 1 1 1 NACHT domain RuvB_N PF05496.7 gi|344210439|ref|YP_004794759.1| - 0.0092 15.0 0.0 0.017 14.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|344210439|ref|YP_004794759.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|344210439|ref|YP_004794759.1| - 0.011 15.6 0.0 0.23 11.3 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|344210439|ref|YP_004794759.1| - 0.012 16.4 0.2 0.048 14.4 0.2 2.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|344210439|ref|YP_004794759.1| - 0.015 14.8 0.4 0.14 11.6 0.0 2.3 2 1 1 3 3 3 0 AAA domain DUF815 PF05673.8 gi|344210439|ref|YP_004794759.1| - 0.018 13.9 0.0 0.11 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|344210439|ref|YP_004794759.1| - 0.019 15.3 0.1 0.19 12.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|344210439|ref|YP_004794759.1| - 0.031 13.8 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|344210439|ref|YP_004794759.1| - 0.047 12.3 0.0 0.079 11.6 0.0 1.5 1 1 0 1 1 1 0 Rad17 cell cycle checkpoint protein RNA_helicase PF00910.17 gi|344210439|ref|YP_004794759.1| - 0.072 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|344210439|ref|YP_004794759.1| - 0.073 12.7 0.0 0.19 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) TraD_N PF12615.3 gi|344210440|ref|YP_004794760.1| - 0.15 12.4 0.0 1.3 9.4 0.0 2.4 3 0 0 3 3 3 0 F sex factor protein N terminal Ribonuc_L-PSP PF01042.16 gi|344210442|ref|YP_004794762.1| - 5.5e-27 93.9 0.6 5.9e-27 93.8 0.4 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP MaoC_dehydrat_N PF13452.1 gi|344210442|ref|YP_004794762.1| - 0.039 13.7 0.1 0.49 10.1 0.0 2.2 2 0 0 2 2 2 0 N-terminal half of MaoC dehydratase MatE PF01554.13 gi|344210443|ref|YP_004794763.1| - 1.7e-51 174.0 24.2 1.7e-26 92.7 3.1 2.9 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|344210443|ref|YP_004794763.1| - 5.1e-09 36.0 9.9 5.1e-09 36.0 6.8 4.2 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MaoC_dehydratas PF01575.14 gi|344210444|ref|YP_004794764.1| - 1.4e-08 34.1 0.0 4.7e-08 32.4 0.0 1.8 1 1 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344210444|ref|YP_004794764.1| - 0.00016 21.4 0.0 0.0066 16.2 0.0 2.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|344210444|ref|YP_004794764.1| - 0.00031 20.7 0.1 0.00076 19.5 0.0 1.7 2 0 0 2 2 2 1 Thioesterase superfamily Fer4_15 PF13459.1 gi|344210445|ref|YP_004794765.1| - 2.7e-17 63.0 3.8 3.3e-17 62.8 2.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|344210445|ref|YP_004794765.1| - 1.4e-07 31.8 1.9 2.9e-07 30.7 1.3 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|344210445|ref|YP_004794765.1| - 0.016 15.0 0.2 0.15 11.8 0.2 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|344210445|ref|YP_004794765.1| - 0.031 13.8 1.3 1.9 8.1 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|344210445|ref|YP_004794765.1| - 0.032 14.0 0.1 0.074 12.8 0.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344210445|ref|YP_004794765.1| - 0.1 12.9 0.3 17 5.8 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain CAF1-p150_C2 PF15539.1 gi|344210445|ref|YP_004794765.1| - 0.31 10.1 1.6 0.31 10.1 1.1 1.0 1 0 0 1 1 1 0 CAF1 complex subunit p150, region binding to CAF1-p60 at C-term DEAD PF00270.24 gi|344210446|ref|YP_004794766.1| - 1.2e-26 93.1 0.0 2.2e-26 92.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|344210446|ref|YP_004794766.1| - 8.4e-08 31.9 0.0 1.8e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|344210446|ref|YP_004794766.1| - 3.8e-06 26.9 6.2 7.4e-06 26.0 0.3 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|344210446|ref|YP_004794766.1| - 3.6e-05 23.6 0.0 6.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|344210446|ref|YP_004794766.1| - 0.0036 16.8 0.0 0.01 15.3 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|344210446|ref|YP_004794766.1| - 0.1 12.3 0.0 0.91 9.3 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif CGI-121 PF08617.5 gi|344210447|ref|YP_004794767.1| - 1.9e-18 66.6 0.0 2.1e-18 66.4 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 MipA PF06629.7 gi|344210447|ref|YP_004794767.1| - 0.0045 16.4 0.0 0.0058 16.0 0.0 1.4 1 1 0 1 1 1 1 MltA-interacting protein MipA Oxidored_FMN PF00724.15 gi|344210449|ref|YP_004794769.1| - 5.3e-31 107.8 0.0 2.6e-28 99.0 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|344210449|ref|YP_004794769.1| - 0.15 10.8 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Abhydrolase_6 PF12697.2 gi|344210450|ref|YP_004794770.1| - 1.2e-43 149.6 3.8 1.4e-43 149.4 2.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344210450|ref|YP_004794770.1| - 2.2e-18 66.6 0.1 6.5e-17 61.8 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|344210450|ref|YP_004794770.1| - 1.6e-17 63.6 0.1 4.4e-16 58.9 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|344210450|ref|YP_004794770.1| - 0.0011 18.4 0.0 0.57 9.5 0.0 3.1 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.3 gi|344210450|ref|YP_004794770.1| - 0.0028 17.4 0.0 0.031 14.1 0.0 2.4 2 0 0 2 2 2 1 Putative lysophospholipase Thioesterase PF00975.15 gi|344210450|ref|YP_004794770.1| - 0.0093 16.2 0.0 0.012 15.8 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.5 gi|344210450|ref|YP_004794770.1| - 0.023 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein MaoC_dehydratas PF01575.14 gi|344210451|ref|YP_004794771.1| - 4.4e-26 90.6 0.0 6.9e-26 90.0 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344210451|ref|YP_004794771.1| - 1.4e-12 47.5 0.0 4.6e-12 45.8 0.0 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|344210451|ref|YP_004794771.1| - 0.0011 19.0 0.0 0.0033 17.4 0.0 1.8 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|344210451|ref|YP_004794771.1| - 0.0075 16.7 0.0 0.018 15.5 0.0 1.4 1 1 0 1 1 1 1 Thioesterase-like superfamily Antitoxin-MazE PF04014.13 gi|344210452|ref|YP_004794772.1| - 0.027 14.1 0.7 0.061 13.0 0.5 1.6 1 1 0 1 1 1 0 Antidote-toxin recognition MazE FlxA PF14282.1 gi|344210453|ref|YP_004794773.1| - 0.00013 21.8 2.6 0.00013 21.8 1.8 2.3 2 0 0 2 2 2 1 FlxA-like protein Filament PF00038.16 gi|344210453|ref|YP_004794773.1| - 0.00094 18.7 19.8 0.0012 18.4 13.7 1.0 1 0 0 1 1 1 1 Intermediate filament protein Apolipoprotein PF01442.13 gi|344210453|ref|YP_004794773.1| - 0.0013 18.2 11.0 0.0013 18.2 7.6 2.3 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.7 gi|344210453|ref|YP_004794773.1| - 0.0019 18.4 13.3 0.0099 16.1 3.7 3.4 1 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein ApoO PF09769.4 gi|344210453|ref|YP_004794773.1| - 0.0033 17.1 7.3 0.46 10.1 0.7 2.8 1 1 1 2 2 2 2 Apolipoprotein O Cauli_AT PF03233.8 gi|344210453|ref|YP_004794773.1| - 0.0084 15.8 1.2 0.0084 15.8 0.8 1.8 1 1 1 2 2 2 1 Aphid transmission protein Rsd_AlgQ PF04353.8 gi|344210453|ref|YP_004794773.1| - 0.0084 15.8 5.2 0.0084 15.8 3.6 1.6 1 1 1 2 2 2 1 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Baculo_PEP_C PF04513.7 gi|344210453|ref|YP_004794773.1| - 0.0089 15.8 8.8 0.76 9.6 0.8 2.8 1 1 0 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|344210453|ref|YP_004794773.1| - 0.021 13.3 10.6 0.025 13.0 7.4 1.0 1 0 0 1 1 1 0 AAA domain Syntaxin PF00804.20 gi|344210453|ref|YP_004794773.1| - 0.036 14.2 1.8 0.036 14.2 1.2 2.9 3 1 0 3 3 3 0 Syntaxin DUF3584 PF12128.3 gi|344210453|ref|YP_004794773.1| - 0.043 11.1 16.1 0.056 10.7 11.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Prominin PF05478.6 gi|344210453|ref|YP_004794773.1| - 0.043 11.3 8.9 0.054 11.0 6.2 1.1 1 0 0 1 1 1 0 Prominin DUF4217 PF13959.1 gi|344210453|ref|YP_004794773.1| - 0.052 13.0 0.3 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4217) DUF883 PF05957.8 gi|344210453|ref|YP_004794773.1| - 0.053 13.9 11.5 0.17 12.2 4.2 2.7 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) IL6 PF00489.12 gi|344210453|ref|YP_004794773.1| - 0.059 12.9 4.2 1 8.9 0.0 2.9 1 1 1 3 3 3 0 Interleukin-6/G-CSF/MGF family Barstar PF01337.13 gi|344210453|ref|YP_004794773.1| - 0.072 12.9 2.2 5.3 6.9 0.4 2.7 1 1 2 3 3 3 0 Barstar (barnase inhibitor) T2SF PF00482.18 gi|344210453|ref|YP_004794773.1| - 0.11 12.4 2.1 0.72 9.7 1.4 2.3 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F YtxH PF12732.2 gi|344210453|ref|YP_004794773.1| - 0.15 12.4 12.2 2.1e+02 2.3 8.5 3.2 1 1 0 1 1 1 0 YtxH-like protein Spc7 PF08317.6 gi|344210453|ref|YP_004794773.1| - 0.16 10.5 10.4 0.12 10.9 5.1 1.9 1 1 1 2 2 2 0 Spc7 kinetochore protein ISG65-75 PF11727.3 gi|344210453|ref|YP_004794773.1| - 0.17 10.9 9.5 0.22 10.5 6.1 1.7 1 1 0 1 1 1 0 Invariant surface glycoprotein PilJ PF13675.1 gi|344210453|ref|YP_004794773.1| - 0.2 11.9 11.2 22 5.4 7.8 2.9 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term HrpB7 PF09486.5 gi|344210453|ref|YP_004794773.1| - 0.21 11.4 13.6 2.3 8.1 5.8 2.3 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF1664 PF07889.7 gi|344210453|ref|YP_004794773.1| - 0.22 11.3 11.6 0.78 9.5 0.5 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DASH_Duo1 PF08651.5 gi|344210453|ref|YP_004794773.1| - 0.39 10.3 4.8 3.6 7.2 0.2 3.2 2 1 2 4 4 4 0 DASH complex subunit Duo1 MutS_III PF05192.13 gi|344210453|ref|YP_004794773.1| - 0.42 10.3 2.5 1.3 8.8 1.7 1.8 1 1 0 1 1 1 0 MutS domain III PMC2NT PF08066.7 gi|344210453|ref|YP_004794773.1| - 0.55 10.5 10.9 0.69 10.2 1.4 2.7 1 1 0 2 2 2 0 PMC2NT (NUC016) domain Sec8_exocyst PF04048.9 gi|344210453|ref|YP_004794773.1| - 0.59 9.7 9.0 0.25 10.9 3.3 2.3 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Allexi_40kDa PF05549.6 gi|344210453|ref|YP_004794773.1| - 0.81 8.9 5.6 1.4 8.1 0.2 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein His_Phos_1 PF00300.17 gi|344210453|ref|YP_004794773.1| - 0.83 9.7 4.3 1.3 9.0 2.6 1.5 1 1 1 2 2 2 0 Histidine phosphatase superfamily (branch 1) DUF948 PF06103.6 gi|344210453|ref|YP_004794773.1| - 0.86 9.5 11.7 1 9.2 0.6 3.2 2 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) MIS13 PF08202.6 gi|344210453|ref|YP_004794773.1| - 0.99 8.4 9.6 1.1 8.2 1.1 2.1 1 1 1 2 2 2 0 Mis12-Mtw1 protein family Syntaxin-6_N PF09177.6 gi|344210453|ref|YP_004794773.1| - 1 9.8 12.7 0.71 10.3 3.6 2.8 1 1 2 3 3 3 0 Syntaxin 6, N-terminal DUF3138 PF11336.3 gi|344210453|ref|YP_004794773.1| - 1 7.4 6.8 0.68 8.0 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3138) Mod_r PF07200.8 gi|344210453|ref|YP_004794773.1| - 1.1 9.1 12.1 0.11 12.4 4.0 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF4449 PF14613.1 gi|344210453|ref|YP_004794773.1| - 1.3 8.8 10.6 1 9.2 0.6 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4449) Tweety PF04906.8 gi|344210453|ref|YP_004794773.1| - 1.5 7.1 6.7 2 6.7 0.6 2.4 1 1 2 3 3 3 0 Tweety DUF607 PF04678.8 gi|344210453|ref|YP_004794773.1| - 1.7 8.4 8.9 16 5.3 6.2 2.2 1 1 0 1 1 1 0 Protein of unknown function, DUF607 AAA_23 PF13476.1 gi|344210453|ref|YP_004794773.1| - 1.8 8.8 9.7 3.1 8.0 6.7 1.4 1 1 0 1 1 1 0 AAA domain Laminin_II PF06009.7 gi|344210453|ref|YP_004794773.1| - 1.9 8.2 11.8 1.6 8.4 4.0 2.8 1 1 1 2 2 2 0 Laminin Domain II UPF0184 PF03670.8 gi|344210453|ref|YP_004794773.1| - 2.2 8.5 9.0 7.3 6.8 3.8 2.3 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) End3 PF12761.2 gi|344210453|ref|YP_004794773.1| - 2.3 7.7 10.9 6.8 6.2 7.5 1.9 1 1 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Spectrin PF00435.16 gi|344210453|ref|YP_004794773.1| - 2.5 8.4 13.9 1.6 9.0 6.2 2.6 1 1 1 2 2 2 0 Spectrin repeat AATF-Che1 PF13339.1 gi|344210453|ref|YP_004794773.1| - 2.7 8.1 10.6 3e+02 1.5 7.4 2.8 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Phasin PF05597.6 gi|344210453|ref|YP_004794773.1| - 4.4 7.0 15.4 4.7 6.9 4.3 3.0 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Exonuc_VII_L PF02601.10 gi|344210453|ref|YP_004794773.1| - 4.6 6.3 9.6 0.33 10.1 1.8 1.9 1 1 1 2 2 2 0 Exonuclease VII, large subunit Cytochrom_C_2 PF01322.15 gi|344210453|ref|YP_004794773.1| - 5.2 7.6 8.3 6.5 7.3 4.1 2.2 1 1 0 1 1 1 0 Cytochrome C' TBPIP PF07106.8 gi|344210453|ref|YP_004794773.1| - 5.5 6.5 13.6 1.6 8.2 3.0 2.8 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) BLOC1_2 PF10046.4 gi|344210453|ref|YP_004794773.1| - 5.8 7.1 16.0 59 3.8 7.8 3.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlgN PF05130.7 gi|344210453|ref|YP_004794773.1| - 9.1 6.5 13.0 3.6 7.8 5.6 2.5 1 1 0 2 2 2 0 FlgN protein DUF4618 PF15397.1 gi|344210453|ref|YP_004794773.1| - 9.3 5.4 15.9 1.3 8.3 4.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) PHA_synth_III_E PF09712.5 gi|344210454|ref|YP_004794774.1| - 3.5e-14 52.8 12.1 7e-14 51.9 2.1 2.2 1 1 1 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|344210454|ref|YP_004794774.1| - 3.3e-05 23.6 1.2 3.3e-05 23.6 0.8 2.4 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) FliD_C PF07195.7 gi|344210454|ref|YP_004794774.1| - 0.069 12.4 1.5 0.53 9.5 0.0 2.1 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus RuBisCO_large PF00016.15 gi|344210454|ref|YP_004794774.1| - 0.094 11.5 0.3 0.26 10.0 0.0 1.8 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, catalytic domain BMFP PF04380.8 gi|344210454|ref|YP_004794774.1| - 0.098 12.8 10.8 0.53 10.4 2.6 2.6 3 0 0 3 3 2 0 Membrane fusogenic activity DUF4083 PF13314.1 gi|344210454|ref|YP_004794774.1| - 0.1 12.4 0.6 0.19 11.5 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) HK97-gp10_like PF04883.7 gi|344210454|ref|YP_004794774.1| - 0.11 13.4 0.9 18 6.3 0.1 2.7 2 2 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component P4Ha_N PF08336.6 gi|344210454|ref|YP_004794774.1| - 0.23 11.2 7.4 1.5 8.6 0.2 2.6 2 1 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region BLOC1_2 PF10046.4 gi|344210454|ref|YP_004794774.1| - 0.28 11.3 8.0 6.7 6.9 1.8 2.9 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LXG PF04740.7 gi|344210454|ref|YP_004794774.1| - 0.53 10.0 4.8 0.87 9.3 1.3 2.0 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF29 PF01724.11 gi|344210454|ref|YP_004794774.1| - 0.64 9.8 7.6 4.9 6.9 0.5 2.8 1 1 2 3 3 3 0 Domain of unknown function DUF29 YkyA PF10368.4 gi|344210454|ref|YP_004794774.1| - 0.84 8.9 7.4 0.085 12.1 1.2 2.0 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein YflT PF11181.3 gi|344210454|ref|YP_004794774.1| - 0.97 9.6 3.7 2.1 8.5 0.2 2.6 1 1 0 2 2 2 0 Heat induced stress protein YflT Tape_meas_lam_C PF09718.5 gi|344210454|ref|YP_004794774.1| - 1.6 8.6 13.9 0.64 9.9 0.4 3.5 3 1 0 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF2262 PF10020.4 gi|344210454|ref|YP_004794774.1| - 1.9 8.6 10.2 4.4 7.5 7.0 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2262) NYD-SP28 PF14772.1 gi|344210454|ref|YP_004794774.1| - 2.9 8.0 13.3 0.034 14.2 1.8 2.5 3 0 0 3 3 3 0 Sperm tail FadA PF09403.5 gi|344210454|ref|YP_004794774.1| - 3.6 7.6 8.1 0.24 11.4 0.7 2.1 2 1 0 2 2 2 0 Adhesion protein FadA RebB PF11747.3 gi|344210454|ref|YP_004794774.1| - 5.3 7.0 8.9 1.3 8.9 1.2 2.2 2 0 0 2 2 2 0 Killing trait DUF904 PF06005.7 gi|344210454|ref|YP_004794774.1| - 7.6 6.9 8.1 0.88 9.9 2.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Abhydrolase_1 PF00561.15 gi|344210455|ref|YP_004794775.1| - 2e-15 56.9 0.0 3.9e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold HHH_5 PF14520.1 gi|344210455|ref|YP_004794775.1| - 2.1e-10 40.6 0.1 5e-10 39.3 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain Abhydrolase_6 PF12697.2 gi|344210455|ref|YP_004794775.1| - 8.7e-10 38.8 0.0 3.1e-09 37.0 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|344210455|ref|YP_004794775.1| - 4.8e-09 35.1 0.0 2.3e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) PhaC_N PF07167.8 gi|344210455|ref|YP_004794775.1| - 1e-08 34.8 0.0 1.7e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|344210455|ref|YP_004794775.1| - 6.4e-08 32.4 0.0 7.7e-07 28.9 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|344210455|ref|YP_004794775.1| - 4.9e-07 29.2 0.1 0.0021 17.3 0.0 3.2 2 1 1 3 3 3 2 Dienelactone hydrolase family PHB_depo_C PF06850.6 gi|344210455|ref|YP_004794775.1| - 1.9e-05 23.9 0.0 3.7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DUF4332 PF14229.1 gi|344210455|ref|YP_004794775.1| - 0.00013 21.8 0.0 0.00032 20.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|344210455|ref|YP_004794775.1| - 0.0004 19.8 0.0 0.0012 18.3 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|344210455|ref|YP_004794775.1| - 0.00075 19.3 0.1 0.0027 17.5 0.0 1.9 2 0 0 2 2 2 1 Pathogenicity locus FSH1 PF03959.8 gi|344210455|ref|YP_004794775.1| - 0.00079 18.9 0.0 0.076 12.4 0.0 2.2 2 0 0 2 2 2 1 Serine hydrolase (FSH1) TfoX_C PF04994.8 gi|344210455|ref|YP_004794775.1| - 0.0043 16.9 0.0 0.0099 15.7 0.0 1.6 1 0 0 1 1 1 1 TfoX C-terminal domain DUF2048 PF09752.4 gi|344210455|ref|YP_004794775.1| - 0.056 12.3 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Lysine_decarbox PF03641.9 gi|344210456|ref|YP_004794776.1| - 1.2e-08 34.8 0.6 1.9e-08 34.2 0.2 1.4 2 0 0 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|344210456|ref|YP_004794776.1| - 1.1e-05 24.4 2.4 0.0003 19.7 0.6 2.0 1 1 1 2 2 2 2 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|344210456|ref|YP_004794776.1| - 0.0038 17.0 0.0 0.0071 16.2 0.0 1.5 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase AA_kinase PF00696.23 gi|344210456|ref|YP_004794776.1| - 0.028 13.9 0.7 0.058 12.9 0.5 1.4 1 1 0 1 1 1 0 Amino acid kinase family Cpn60_TCP1 PF00118.19 gi|344210458|ref|YP_004794778.1| - 4.1e-165 550.0 7.8 4.7e-165 549.8 5.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Nitro_FeMo-Co PF02579.12 gi|344210458|ref|YP_004794778.1| - 0.06 13.4 0.7 0.39 10.8 0.0 2.6 2 1 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor AAA_22 PF13401.1 gi|344210459|ref|YP_004794779.1| - 3.1e-09 37.0 0.0 9.7e-09 35.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344210459|ref|YP_004794779.1| - 0.003 17.7 0.0 0.095 12.8 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|344210459|ref|YP_004794779.1| - 0.033 13.8 0.0 0.054 13.1 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|344210459|ref|YP_004794779.1| - 0.043 12.6 0.0 0.067 12.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.1 gi|344210459|ref|YP_004794779.1| - 0.07 13.1 0.6 0.3 11.0 0.1 2.2 2 1 0 2 2 2 0 AAA ATPase domain zf-Mss51 PF13824.1 gi|344210461|ref|YP_004794781.1| - 0.16 11.8 1.2 0.66 9.8 0.0 2.0 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Syndecan PF01034.15 gi|344210462|ref|YP_004794782.1| - 0.59 9.8 4.3 8.3 6.1 0.2 2.7 2 0 0 2 2 2 0 Syndecan domain NAD_binding_10 PF13460.1 gi|344210463|ref|YP_004794783.1| - 6.7e-27 94.6 0.5 6.7e-27 94.6 0.3 1.5 2 0 0 2 2 2 1 NADH(P)-binding NmrA PF05368.8 gi|344210463|ref|YP_004794783.1| - 5.9e-16 58.4 0.0 8.1e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|344210463|ref|YP_004794783.1| - 3.3e-10 39.8 0.1 4.3e-09 36.1 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344210463|ref|YP_004794783.1| - 2.1e-06 26.6 0.0 3.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|344210463|ref|YP_004794783.1| - 0.00046 19.1 0.0 0.00085 18.3 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|344210463|ref|YP_004794783.1| - 0.00091 18.1 0.0 0.19 10.5 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain adh_short PF00106.20 gi|344210463|ref|YP_004794783.1| - 0.0042 17.0 1.6 0.012 15.5 1.1 1.9 1 1 0 1 1 1 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|344210463|ref|YP_004794783.1| - 0.0053 16.9 4.2 0.023 14.8 2.9 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain DUF4147 PF13660.1 gi|344210463|ref|YP_004794783.1| - 0.04 13.0 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) Glyco_transf_43 PF03360.11 gi|344210463|ref|YP_004794783.1| - 0.18 11.3 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 43 Epimerase PF01370.16 gi|344210464|ref|YP_004794784.1| - 3.4e-66 223.0 0.0 4.2e-66 222.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344210464|ref|YP_004794784.1| - 5.2e-28 97.5 0.0 6.7e-28 97.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|344210464|ref|YP_004794784.1| - 5.7e-20 71.3 0.1 7.9e-20 70.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|344210464|ref|YP_004794784.1| - 3.3e-18 65.5 0.0 1.7e-17 63.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|344210464|ref|YP_004794784.1| - 1.2e-13 50.5 0.0 1.9e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|344210464|ref|YP_004794784.1| - 1.4e-13 51.2 0.1 1.3e-12 48.0 0.1 2.0 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|344210464|ref|YP_004794784.1| - 1.9e-12 47.4 0.0 5.7e-12 45.8 0.0 1.8 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344210464|ref|YP_004794784.1| - 2.9e-08 33.5 0.0 1.5e-07 31.2 0.0 2.0 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|344210464|ref|YP_004794784.1| - 5.6e-08 32.3 0.0 6.7e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Epimerase_Csub PF13950.1 gi|344210464|ref|YP_004794784.1| - 0.031 14.2 0.2 0.063 13.2 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit 3HCDH_N PF02737.13 gi|344210464|ref|YP_004794784.1| - 0.039 13.5 0.0 0.071 12.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|344210464|ref|YP_004794784.1| - 0.042 13.2 0.1 0.13 11.5 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|344210464|ref|YP_004794784.1| - 0.16 11.9 1.1 1.2 9.1 0.1 2.7 2 2 0 2 2 2 0 TrkA-N domain Abi PF02517.11 gi|344210466|ref|YP_004794786.1| - 1e-15 57.6 8.3 5.6e-15 55.2 1.0 2.9 2 2 1 3 3 3 2 CAAX protease self-immunity Pox_A14 PF05767.7 gi|344210466|ref|YP_004794786.1| - 0.8 9.7 0.0 0.8 9.7 0.0 2.3 3 0 0 3 3 3 0 Poxvirus virion envelope protein A14 HTH_20 PF12840.2 gi|344210467|ref|YP_004794787.1| - 4.7e-09 35.9 0.6 6.6e-09 35.4 0.4 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344210467|ref|YP_004794787.1| - 3.1e-07 29.9 0.0 5e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344210467|ref|YP_004794787.1| - 2.3e-06 27.1 0.0 3.4e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|344210467|ref|YP_004794787.1| - 4.9e-05 22.6 0.0 6.4e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344210467|ref|YP_004794787.1| - 4.9e-05 22.8 0.0 7.8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|344210467|ref|YP_004794787.1| - 0.00029 20.4 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|344210467|ref|YP_004794787.1| - 0.00031 20.1 0.1 0.00073 19.0 0.1 1.7 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|344210467|ref|YP_004794787.1| - 0.0009 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|344210467|ref|YP_004794787.1| - 0.0026 17.4 0.0 0.0047 16.6 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|344210467|ref|YP_004794787.1| - 0.0037 17.5 0.0 0.0055 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|344210467|ref|YP_004794787.1| - 0.014 14.5 0.0 0.034 13.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|344210467|ref|YP_004794787.1| - 0.016 14.8 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain Dimerisation PF08100.6 gi|344210467|ref|YP_004794787.1| - 0.049 13.4 0.0 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain HTH_36 PF13730.1 gi|344210467|ref|YP_004794787.1| - 0.093 12.8 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|344210467|ref|YP_004794787.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.1 gi|344210467|ref|YP_004794787.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HxlR PF01638.12 gi|344210467|ref|YP_004794787.1| - 0.14 11.7 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_DeoR PF08220.7 gi|344210467|ref|YP_004794787.1| - 0.14 11.6 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain E1-E2_ATPase PF00122.15 gi|344210468|ref|YP_004794788.1| - 0.0057 15.7 2.7 0.0067 15.4 1.9 1.1 1 0 0 1 1 1 1 E1-E2 ATPase DUF1772 PF08592.6 gi|344210468|ref|YP_004794788.1| - 9.8 5.9 9.3 5.6 6.7 3.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) PetG PF02529.10 gi|344210469|ref|YP_004794789.1| - 0.011 15.2 2.7 0.13 11.8 0.0 2.4 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 DUF2892 PF11127.3 gi|344210469|ref|YP_004794789.1| - 0.032 14.0 2.3 0.032 14.0 1.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2892) YesK PF14150.1 gi|344210469|ref|YP_004794789.1| - 0.1 12.7 4.0 0.14 12.2 2.7 1.2 1 0 0 1 1 1 0 YesK-like protein CSD PF00313.17 gi|344210470|ref|YP_004794790.1| - 1e-19 70.0 0.4 1.2e-19 69.8 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|344210470|ref|YP_004794790.1| - 0.0055 16.4 0.2 0.008 15.8 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|344210470|ref|YP_004794790.1| - 0.04 13.4 2.5 0.06 12.8 1.7 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|344210470|ref|YP_004794790.1| - 0.092 12.6 0.1 0.13 12.1 0.0 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF Helicase_C_2 PF13307.1 gi|344210471|ref|YP_004794791.1| - 1e-22 80.8 0.0 2.2e-22 79.7 0.0 1.5 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|344210471|ref|YP_004794791.1| - 9.3e-07 28.4 0.0 1.5e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|344210471|ref|YP_004794791.1| - 4.9e-06 26.5 0.0 0.0023 17.8 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|344210471|ref|YP_004794791.1| - 1.4e-05 24.7 0.2 3.4e-05 23.5 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|344210471|ref|YP_004794791.1| - 4.3e-05 23.0 0.0 0.055 12.9 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|344210471|ref|YP_004794791.1| - 0.00029 20.8 0.0 0.004 17.1 0.0 2.7 3 0 0 3 3 3 1 AAA ATPase domain AAA_30 PF13604.1 gi|344210471|ref|YP_004794791.1| - 0.00071 19.1 4.3 0.0016 18.0 0.5 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|344210471|ref|YP_004794791.1| - 0.0014 18.8 0.0 0.01 15.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|344210471|ref|YP_004794791.1| - 0.023 14.9 0.0 0.5 10.6 0.0 2.9 4 0 0 4 4 4 0 ABC transporter AAA_10 PF12846.2 gi|344210471|ref|YP_004794791.1| - 0.03 13.7 0.0 7.6 5.8 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain DXP_redisom_C PF08436.7 gi|344210471|ref|YP_004794791.1| - 0.035 13.9 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal PhoH PF02562.11 gi|344210471|ref|YP_004794791.1| - 0.048 12.8 0.0 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA PF00004.24 gi|344210471|ref|YP_004794791.1| - 0.12 12.5 0.0 2.4 8.3 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Met_10 PF02475.11 gi|344210472|ref|YP_004794792.1| - 3.3e-49 167.2 0.0 1.1e-48 165.4 0.0 1.8 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|344210472|ref|YP_004794792.1| - 2.2e-13 50.2 2.5 7.9e-13 48.4 0.4 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344210472|ref|YP_004794792.1| - 3.1e-12 47.0 0.0 6.7e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|344210472|ref|YP_004794792.1| - 6e-06 25.9 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|344210472|ref|YP_004794792.1| - 1.1e-05 24.8 0.0 3.1e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|344210472|ref|YP_004794792.1| - 2.9e-05 23.8 0.0 6e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|344210472|ref|YP_004794792.1| - 0.00011 21.6 0.0 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.1 gi|344210472|ref|YP_004794792.1| - 0.0015 19.2 0.8 0.0076 17.0 0.1 2.4 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210472|ref|YP_004794792.1| - 0.0016 18.0 0.0 0.0031 17.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|344210472|ref|YP_004794792.1| - 0.0024 16.9 0.0 0.0076 15.3 0.0 1.7 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase DNA_methylase PF00145.12 gi|344210472|ref|YP_004794792.1| - 0.04 13.0 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase SAM_MT PF04445.8 gi|344210472|ref|YP_004794792.1| - 0.073 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase tRNA_U5-meth_tr PF05958.6 gi|344210472|ref|YP_004794792.1| - 0.084 11.5 0.0 0.12 11.0 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|344210472|ref|YP_004794792.1| - 0.14 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NMD3 PF04981.8 gi|344210473|ref|YP_004794793.1| - 2.2e-73 246.2 0.0 2.6e-73 246.0 0.0 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|344210473|ref|YP_004794793.1| - 0.0027 17.4 4.6 0.19 11.5 2.2 3.0 2 1 1 3 3 3 1 Double zinc ribbon FYVE PF01363.16 gi|344210473|ref|YP_004794793.1| - 0.003 17.4 1.4 0.21 11.4 0.6 2.3 2 0 0 2 2 2 1 FYVE zinc finger GFA PF04828.9 gi|344210473|ref|YP_004794793.1| - 0.0038 17.1 0.9 9 6.3 0.0 3.4 3 0 0 3 3 3 2 Glutathione-dependent formaldehyde-activating enzyme Rpr2 PF04032.11 gi|344210473|ref|YP_004794793.1| - 0.01 15.6 0.1 0.56 10.1 0.0 2.7 3 0 0 3 3 3 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_2 PF13240.1 gi|344210473|ref|YP_004794793.1| - 0.023 14.1 6.2 0.46 10.0 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|344210473|ref|YP_004794793.1| - 0.085 12.0 8.9 3.1 7.1 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain eIF-5a PF01287.15 gi|344210473|ref|YP_004794793.1| - 0.21 11.5 3.3 0.16 11.9 0.2 2.3 3 0 0 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold UPF0547 PF10571.4 gi|344210473|ref|YP_004794793.1| - 0.9 9.2 5.6 7.3 6.3 0.1 3.2 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-C2H2_3 PF13878.1 gi|344210473|ref|YP_004794793.1| - 1.2 8.7 4.2 71 3.0 0.2 3.6 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Lar_restr_allev PF14354.1 gi|344210473|ref|YP_004794793.1| - 5.7 7.3 6.1 1.1e+02 3.1 3.1 3.1 2 1 0 2 2 2 0 Restriction alleviation protein Lar zf-NADH-PPase PF09297.6 gi|344210473|ref|YP_004794793.1| - 9.6 5.8 12.2 2.6 7.6 0.3 2.8 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain Epimerase PF01370.16 gi|344210474|ref|YP_004794794.1| - 5.2e-27 94.8 0.1 9e-26 90.7 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|344210474|ref|YP_004794794.1| - 8.4e-14 51.1 0.1 4.2e-13 48.8 0.0 1.9 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|344210474|ref|YP_004794794.1| - 7.8e-10 39.0 0.3 1e-09 38.6 0.2 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|344210474|ref|YP_004794794.1| - 6.2e-08 31.8 0.0 9.8e-08 31.2 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|344210474|ref|YP_004794794.1| - 7e-07 29.3 1.3 2.2e-06 27.7 0.1 2.1 2 0 0 2 2 2 1 short chain dehydrogenase 3Beta_HSD PF01073.14 gi|344210474|ref|YP_004794794.1| - 1.2e-06 27.4 0.0 1.9e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|344210474|ref|YP_004794794.1| - 0.0002 20.3 0.1 0.00057 18.8 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|344210474|ref|YP_004794794.1| - 0.0036 16.9 0.3 0.013 15.1 0.2 2.0 1 1 0 1 1 1 1 KR domain DHQ_synthase PF01761.15 gi|344210474|ref|YP_004794794.1| - 0.032 13.1 0.1 0.047 12.5 0.1 1.1 1 0 0 1 1 1 0 3-dehydroquinate synthase Abhydrolase_6 PF12697.2 gi|344210474|ref|YP_004794794.1| - 1.5 8.5 11.3 2.8 7.7 7.9 1.7 1 1 0 1 1 1 0 Alpha/beta hydrolase family Peptidase_M48 PF01435.13 gi|344210475|ref|YP_004794795.1| - 2.3e-41 141.8 0.0 3.4e-41 141.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|344210475|ref|YP_004794795.1| - 9.1e-08 31.4 0.5 1.8e-06 27.1 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|344210475|ref|YP_004794795.1| - 0.059 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily Tic20 PF09685.5 gi|344210475|ref|YP_004794795.1| - 0.086 12.8 9.3 1.2 9.1 1.1 2.3 2 0 0 2 2 2 0 Tic20-like protein SprT-like PF10263.4 gi|344210475|ref|YP_004794795.1| - 0.097 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family NfeD PF01957.13 gi|344210475|ref|YP_004794795.1| - 0.63 10.1 8.7 0.22 11.6 0.4 2.3 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF2207 PF09972.4 gi|344210475|ref|YP_004794795.1| - 0.76 8.2 5.9 5 5.5 1.1 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF418 PF04235.7 gi|344210475|ref|YP_004794795.1| - 7.8 6.1 10.8 18 4.9 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF418) Pox_E6 PF04656.7 gi|344210476|ref|YP_004794796.1| - 0.072 11.2 0.1 0.088 10.9 0.0 1.1 1 0 0 1 1 1 0 Pox virus E6 protein Rad51 PF08423.6 gi|344210477|ref|YP_004794797.1| - 6.4e-81 271.0 0.2 3.8e-48 163.6 0.0 2.0 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|344210477|ref|YP_004794797.1| - 3.1e-11 43.2 1.0 1.8e-10 40.8 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|344210477|ref|YP_004794797.1| - 9.8e-09 34.8 0.3 1.5e-08 34.2 0.2 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|344210477|ref|YP_004794797.1| - 1.4e-07 30.8 0.1 0.0052 15.8 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|344210477|ref|YP_004794797.1| - 8.2e-06 25.2 1.3 0.00093 18.7 0.2 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|344210477|ref|YP_004794797.1| - 0.00053 19.8 0.0 0.0015 18.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|344210477|ref|YP_004794797.1| - 0.0027 17.6 0.0 0.0076 16.1 0.0 1.8 2 0 0 2 2 2 1 Pathogenicity locus KaiC PF06745.8 gi|344210477|ref|YP_004794797.1| - 0.0029 16.7 0.1 0.0071 15.4 0.0 1.7 2 0 0 2 2 2 1 KaiC IMS_HHH PF11798.3 gi|344210477|ref|YP_004794797.1| - 0.0043 17.0 0.0 0.017 15.1 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif AAA_22 PF13401.1 gi|344210477|ref|YP_004794797.1| - 0.033 14.3 0.1 0.11 12.5 0.1 2.0 2 1 0 2 2 1 0 AAA domain HHH_8 PF14716.1 gi|344210477|ref|YP_004794797.1| - 0.053 13.7 0.0 0.31 11.2 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|344210477|ref|YP_004794797.1| - 0.073 12.6 0.0 0.23 11.0 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda HHH_3 PF12836.2 gi|344210477|ref|YP_004794797.1| - 0.12 12.2 0.0 6.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif Aldo_ket_red PF00248.16 gi|344210478|ref|YP_004794798.1| - 3.3e-47 160.6 0.0 3.8e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_1 PF01402.16 gi|344210478|ref|YP_004794798.1| - 5.7 6.9 7.2 3.2 7.8 0.7 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Abi PF02517.11 gi|344210479|ref|YP_004794799.1| - 4.2e-13 49.2 5.2 4.2e-13 49.2 3.6 2.4 2 1 0 2 2 2 1 CAAX protease self-immunity Hexapep PF00132.19 gi|344210480|ref|YP_004794800.1| - 3.9e-08 32.4 1.2 0.0027 17.1 0.0 3.4 3 0 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344210480|ref|YP_004794800.1| - 0.00017 21.0 0.3 0.034 13.6 0.0 3.1 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase KaiC PF06745.8 gi|344210482|ref|YP_004794802.1| - 3.3e-34 117.9 0.2 3.7e-34 117.8 0.1 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.6 gi|344210482|ref|YP_004794802.1| - 2.7e-07 29.2 0.0 1.9e-06 26.4 0.0 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|344210482|ref|YP_004794802.1| - 5.9e-06 25.8 0.0 1e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|344210482|ref|YP_004794802.1| - 0.00047 19.6 0.0 0.00076 18.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|344210482|ref|YP_004794802.1| - 0.00051 19.7 0.0 0.001 18.7 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|344210482|ref|YP_004794802.1| - 0.00053 19.8 0.1 0.0011 18.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344210482|ref|YP_004794802.1| - 0.0007 19.7 0.5 0.0021 18.1 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|344210482|ref|YP_004794802.1| - 0.001 18.9 0.0 0.0036 17.2 0.0 2.0 1 1 1 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|344210482|ref|YP_004794802.1| - 0.0015 18.1 0.3 0.0028 17.2 0.1 1.5 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|344210482|ref|YP_004794802.1| - 0.0022 18.8 0.5 0.0041 17.9 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344210482|ref|YP_004794802.1| - 0.0023 18.1 0.6 0.024 14.8 0.4 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|344210482|ref|YP_004794802.1| - 0.0039 17.1 0.0 0.0055 16.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|344210482|ref|YP_004794802.1| - 0.006 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|344210482|ref|YP_004794802.1| - 0.0096 15.3 0.1 0.012 15.0 0.1 1.3 1 1 0 1 1 1 1 AAA-like domain Miro PF08477.8 gi|344210482|ref|YP_004794802.1| - 0.0096 16.4 0.7 0.077 13.4 0.5 2.2 1 1 0 1 1 1 1 Miro-like protein AAA_18 PF13238.1 gi|344210482|ref|YP_004794802.1| - 0.014 15.7 0.3 0.035 14.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|344210482|ref|YP_004794802.1| - 0.021 14.5 0.0 0.03 14.0 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|344210482|ref|YP_004794802.1| - 0.022 14.9 0.1 0.059 13.5 0.0 1.8 2 0 0 2 2 2 0 RNA helicase MEDS PF14417.1 gi|344210482|ref|YP_004794802.1| - 0.028 13.4 0.0 0.056 12.5 0.0 1.5 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain CobU PF02283.11 gi|344210482|ref|YP_004794802.1| - 0.037 13.4 0.0 5.8 6.2 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase NTPase_1 PF03266.10 gi|344210482|ref|YP_004794802.1| - 0.038 13.7 0.2 0.055 13.1 0.2 1.5 1 1 0 1 1 1 0 NTPase AAA_16 PF13191.1 gi|344210482|ref|YP_004794802.1| - 0.047 13.6 0.0 0.08 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|344210482|ref|YP_004794802.1| - 0.054 13.1 0.1 0.25 10.9 0.0 2.1 2 1 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|344210482|ref|YP_004794802.1| - 0.055 12.9 0.1 0.27 10.6 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|344210482|ref|YP_004794802.1| - 0.057 12.9 0.0 0.11 11.9 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_35 PF14516.1 gi|344210482|ref|YP_004794802.1| - 0.065 11.8 0.1 0.92 8.0 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain ArgK PF03308.11 gi|344210482|ref|YP_004794802.1| - 0.084 11.6 0.1 0.12 11.1 0.1 1.4 1 1 0 1 1 1 0 ArgK protein PHP PF02811.14 gi|344210485|ref|YP_004794805.1| - 1.2e-12 47.9 0.0 3.9e-12 46.3 0.0 1.8 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|344210485|ref|YP_004794805.1| - 0.011 15.2 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 PHP-associated Cupin_2 PF07883.6 gi|344210487|ref|YP_004794807.1| - 5.5e-16 57.8 0.6 8.4e-16 57.2 0.4 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|344210487|ref|YP_004794807.1| - 1.7e-06 27.7 0.1 2.5e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|344210487|ref|YP_004794807.1| - 0.021 14.3 0.1 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 AraC-binding-like domain RPA_interact_C PF14768.1 gi|344210487|ref|YP_004794807.1| - 0.062 13.7 0.3 0.11 12.9 0.2 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF2072 PF09845.4 gi|344210487|ref|YP_004794807.1| - 0.067 13.1 0.2 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) RNHCP PF12647.2 gi|344210487|ref|YP_004794807.1| - 0.13 12.0 1.8 0.24 11.2 0.1 2.0 1 1 1 2 2 2 0 RNHCP domain Zn-ribbon_8 PF09723.5 gi|344210487|ref|YP_004794807.1| - 0.14 12.1 3.4 0.3 11.0 2.4 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Cupin_3 PF05899.7 gi|344210487|ref|YP_004794807.1| - 0.14 11.5 0.3 0.23 10.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Nudix_N_2 PF14803.1 gi|344210487|ref|YP_004794807.1| - 1.1 9.0 3.8 3.2 7.5 2.6 1.9 1 1 0 1 1 1 0 Nudix N-terminal GATase PF00117.23 gi|344210488|ref|YP_004794808.1| - 4e-21 75.3 0.0 5.6e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|344210488|ref|YP_004794808.1| - 8e-06 25.4 0.1 0.0001 21.8 0.0 2.5 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|344210488|ref|YP_004794808.1| - 0.00044 19.0 0.0 0.00061 18.6 0.0 1.3 1 1 0 1 1 1 1 Homoserine O-succinyltransferase Tricorn_C1 PF14684.1 gi|344210489|ref|YP_004794809.1| - 0.024 14.4 0.0 0.026 14.3 0.0 1.1 1 0 0 1 1 1 0 Tricorn protease C1 domain DNA_pol_B_palm PF14792.1 gi|344210489|ref|YP_004794809.1| - 0.066 13.2 0.0 0.072 13.1 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase beta palm Aldo_ket_red PF00248.16 gi|344210491|ref|YP_004794811.1| - 8e-63 211.8 0.0 9.8e-63 211.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family GFO_IDH_MocA PF01408.17 gi|344210492|ref|YP_004794812.1| - 1.1e-19 71.0 0.0 1.9e-19 70.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|344210492|ref|YP_004794812.1| - 0.00041 20.1 0.0 0.001 18.8 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain GTPase_Cys_C PF12631.2 gi|344210493|ref|YP_004794813.1| - 1.5 9.2 7.6 0.31 11.4 0.5 3.2 2 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE zf-ribbon_3 PF13248.1 gi|344210494|ref|YP_004794814.1| - 2.7e-06 26.3 0.9 4.2e-06 25.7 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344210494|ref|YP_004794814.1| - 1.4e-05 24.4 2.3 1.8e-05 24.0 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|344210494|ref|YP_004794814.1| - 3.7e-05 23.4 3.2 5.1e-05 23.0 2.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon stn_TNFRSF12A PF12191.3 gi|344210494|ref|YP_004794814.1| - 0.004 17.1 0.0 0.0045 17.0 0.0 1.1 1 0 0 1 1 1 1 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain zf-RanBP PF00641.13 gi|344210494|ref|YP_004794814.1| - 0.014 14.5 0.8 0.019 14.0 0.6 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others DNA_RNApol_7kD PF03604.8 gi|344210494|ref|YP_004794814.1| - 0.035 13.5 0.8 0.28 10.6 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PolC_DP2 PF03833.8 gi|344210494|ref|YP_004794814.1| - 0.039 11.6 0.4 0.041 11.5 0.3 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 SoxD PF04267.7 gi|344210494|ref|YP_004794814.1| - 0.04 13.7 0.2 0.057 13.2 0.1 1.3 1 0 0 1 1 1 0 Sarcosine oxidase, delta subunit family RELT PF12606.3 gi|344210494|ref|YP_004794814.1| - 0.043 12.9 0.0 0.069 12.2 0.0 1.3 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 DUF2616 PF11077.3 gi|344210494|ref|YP_004794814.1| - 0.099 12.1 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) OrfB_Zn_ribbon PF07282.6 gi|344210494|ref|YP_004794814.1| - 0.15 11.7 0.8 0.2 11.3 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF91 PF01939.11 gi|344210496|ref|YP_004794816.1| - 3.6e-69 232.4 0.0 4.1e-69 232.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 HTH_10 PF04967.7 gi|344210498|ref|YP_004794818.1| - 4.5e-22 77.3 0.0 6.7e-22 76.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|344210498|ref|YP_004794818.1| - 0.00035 20.3 0.1 0.00093 18.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344210498|ref|YP_004794818.1| - 0.0022 17.6 0.0 0.005 16.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|344210498|ref|YP_004794818.1| - 0.0031 16.8 0.0 0.005 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.14 gi|344210498|ref|YP_004794818.1| - 0.0066 15.7 0.0 0.064 12.5 0.0 2.3 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|344210498|ref|YP_004794818.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF3305 PF11749.3 gi|344210498|ref|YP_004794818.1| - 0.014 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3305) HTH_27 PF13463.1 gi|344210498|ref|YP_004794818.1| - 0.017 15.4 0.1 0.049 13.9 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|344210498|ref|YP_004794818.1| - 0.026 14.1 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.7 gi|344210498|ref|YP_004794818.1| - 0.037 13.4 0.0 0.085 12.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|344210498|ref|YP_004794818.1| - 0.096 12.0 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|344210498|ref|YP_004794818.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 HTH domain MutS_V PF00488.16 gi|344210499|ref|YP_004794819.1| - 2.3e-88 295.5 0.0 3.4e-88 295.0 0.0 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|344210499|ref|YP_004794819.1| - 3e-39 134.9 4.0 5.6e-39 134.0 2.8 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|344210499|ref|YP_004794819.1| - 1.4e-37 128.2 0.0 4.9e-37 126.4 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|344210499|ref|YP_004794819.1| - 5.5e-31 106.5 0.3 1e-30 105.7 0.2 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|344210499|ref|YP_004794819.1| - 4.2e-12 46.3 0.0 1.4e-11 44.6 0.0 1.9 1 0 0 1 1 1 1 MutS domain II Cpn60_TCP1 PF00118.19 gi|344210501|ref|YP_004794821.1| - 3.3e-148 494.3 6.8 3.7e-148 494.1 4.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family OCD_Mu_crystall PF02423.10 gi|344210503|ref|YP_004794823.1| - 9.4e-88 293.9 3.7 1.1e-87 293.8 2.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|344210503|ref|YP_004794823.1| - 3.8e-06 27.0 0.0 6.2e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|344210503|ref|YP_004794823.1| - 0.039 14.4 0.0 0.097 13.1 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold zf-ribbon_3 PF13248.1 gi|344210505|ref|YP_004794825.1| - 0.0007 18.7 0.8 0.62 9.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2082 PF09855.4 gi|344210505|ref|YP_004794825.1| - 0.0043 16.8 0.2 0.0057 16.4 0.1 1.2 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|344210505|ref|YP_004794825.1| - 0.0075 16.5 2.8 0.037 14.3 2.0 1.8 1 1 0 1 1 1 1 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|344210505|ref|YP_004794825.1| - 0.015 14.9 2.1 1 9.1 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|344210505|ref|YP_004794825.1| - 0.038 13.7 2.3 0.088 12.5 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|344210505|ref|YP_004794825.1| - 0.05 13.0 2.9 0.71 9.3 0.5 2.2 2 0 0 2 2 2 0 HypF finger CpXC PF14353.1 gi|344210505|ref|YP_004794825.1| - 0.13 12.2 0.7 1.8 8.5 0.1 1.9 1 1 0 1 1 1 0 CpXC protein Ribosomal_S27e PF01667.12 gi|344210505|ref|YP_004794825.1| - 0.13 11.8 0.3 7.8 6.1 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 Zn_ribbon_recom PF13408.1 gi|344210505|ref|YP_004794825.1| - 0.16 12.2 0.4 7.2 6.9 0.3 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-C4_Topoisom PF01396.14 gi|344210505|ref|YP_004794825.1| - 0.17 11.3 1.2 1.6 8.3 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|344210505|ref|YP_004794825.1| - 0.19 11.5 2.1 2.2 8.1 1.5 2.0 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344210505|ref|YP_004794825.1| - 0.25 10.8 3.5 2.4 7.7 2.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|344210505|ref|YP_004794825.1| - 0.38 10.7 2.2 4 7.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.7 gi|344210505|ref|YP_004794825.1| - 0.41 10.4 1.8 1.3 8.8 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbons Ogr_Delta PF04606.7 gi|344210505|ref|YP_004794825.1| - 3.3 7.4 4.6 2.3 7.9 0.3 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|344210505|ref|YP_004794825.1| - 7.5 5.9 7.0 1.6e+02 1.6 4.8 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|344210505|ref|YP_004794825.1| - 9.5 5.8 7.4 5.9 6.4 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.1 gi|344210506|ref|YP_004794826.1| - 0.011 15.7 0.1 0.013 15.5 0.1 1.1 1 0 0 1 1 1 0 CpXC protein zf-ribbon_3 PF13248.1 gi|344210506|ref|YP_004794826.1| - 0.02 14.0 3.0 0.18 11.0 2.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|344210506|ref|YP_004794826.1| - 0.036 13.2 1.0 0.35 10.0 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF678 PF05077.7 gi|344210506|ref|YP_004794826.1| - 0.067 13.1 0.3 0.086 12.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF678) RNHCP PF12647.2 gi|344210506|ref|YP_004794826.1| - 0.073 12.9 0.2 4.4 7.2 0.0 2.1 2 0 0 2 2 2 0 RNHCP domain Herpes_UL49_5 PF05702.6 gi|344210506|ref|YP_004794826.1| - 0.076 12.8 0.0 0.079 12.8 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL49.5 envelope/tegument protein DZR PF12773.2 gi|344210506|ref|YP_004794826.1| - 0.093 12.5 0.8 0.22 11.3 0.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|344210506|ref|YP_004794826.1| - 0.11 12.2 0.7 7.6 6.3 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|344210506|ref|YP_004794826.1| - 0.12 12.0 0.4 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|344210506|ref|YP_004794826.1| - 0.13 12.0 1.6 0.51 10.1 1.1 1.9 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_4 PF13717.1 gi|344210506|ref|YP_004794826.1| - 0.13 11.9 0.4 2.2 8.0 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|344210506|ref|YP_004794826.1| - 0.25 11.6 2.2 1.9 8.8 1.6 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar HATPase_c PF02518.21 gi|344210507|ref|YP_004794827.1| - 1.9e-13 50.0 0.0 3.1e-12 46.1 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344210507|ref|YP_004794827.1| - 8.9e-08 32.1 0.4 2.5e-07 30.7 0.3 1.8 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|344210507|ref|YP_004794827.1| - 0.0023 17.8 0.9 0.005 16.8 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|344210507|ref|YP_004794827.1| - 0.0034 17.0 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|344210507|ref|YP_004794827.1| - 0.12 12.6 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 PAS domain tRNA-synt_1 PF00133.17 gi|344210508|ref|YP_004794828.1| - 1.2e-74 251.4 3.5 1.7e-26 92.4 0.0 4.9 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|344210508|ref|YP_004794828.1| - 5.2e-58 195.3 0.0 8.9e-58 194.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|344210508|ref|YP_004794828.1| - 3.4e-36 124.7 0.0 3.7e-25 88.4 0.0 4.3 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|344210508|ref|YP_004794828.1| - 5.6e-15 55.4 0.1 1.1e-14 54.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|344210508|ref|YP_004794828.1| - 0.00053 19.1 0.0 0.052 12.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|344210508|ref|YP_004794828.1| - 0.0077 14.9 0.0 0.73 8.4 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|344210508|ref|YP_004794828.1| - 0.026 13.3 0.1 4.5 5.9 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (R) DZR PF12773.2 gi|344210508|ref|YP_004794828.1| - 0.07 12.9 5.8 0.81 9.5 0.7 2.9 2 1 0 2 2 2 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|344210508|ref|YP_004794828.1| - 0.1 12.2 3.7 1.4 8.6 0.0 2.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|344210508|ref|YP_004794828.1| - 1.5 8.2 7.0 14 5.1 0.1 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|344210508|ref|YP_004794828.1| - 1.6 8.0 5.5 11 5.3 0.0 3.5 4 0 0 4 4 4 0 zinc-ribbon domain AhpC-TSA PF00578.16 gi|344210509|ref|YP_004794829.1| - 1.9e-30 105.1 0.0 2.2e-30 104.8 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344210509|ref|YP_004794829.1| - 3.7e-18 65.4 0.0 4.1e-18 65.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|344210509|ref|YP_004794829.1| - 0.00048 20.0 0.0 0.00061 19.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|344210509|ref|YP_004794829.1| - 0.0046 16.4 0.0 0.0053 16.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HSP20 PF00011.16 gi|344210510|ref|YP_004794830.1| - 2.8e-20 72.0 0.2 3.3e-20 71.8 0.2 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PDT PF00800.13 gi|344210511|ref|YP_004794831.1| - 1.3e-50 171.5 0.3 1.6e-50 171.2 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|344210511|ref|YP_004794831.1| - 1.2e-07 31.0 0.0 6e-07 28.8 0.0 2.2 2 0 0 2 2 2 1 ACT domain DUF4234 PF14018.1 gi|344210512|ref|YP_004794832.1| - 3e-05 23.6 4.7 7.4e-05 22.4 3.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4234) PsbW PF07123.7 gi|344210512|ref|YP_004794832.1| - 0.47 10.5 2.6 0.63 10.1 0.4 1.9 1 1 1 2 2 2 0 Photosystem II reaction centre W protein (PsbW) DUF412 PF04217.8 gi|344210512|ref|YP_004794832.1| - 0.81 9.4 3.9 2.3 8.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF412 DUF3649 PF12365.3 gi|344210512|ref|YP_004794832.1| - 2.2 7.8 6.2 0.48 9.9 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3649) Pyr_redox_2 PF07992.9 gi|344210514|ref|YP_004794834.1| - 5.8e-37 127.5 9.2 2.6e-36 125.4 6.4 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|344210514|ref|YP_004794834.1| - 6.5e-36 122.7 1.2 1.5e-35 121.5 0.2 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|344210514|ref|YP_004794834.1| - 1.5e-20 73.3 5.6 4.8e-18 65.3 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|344210514|ref|YP_004794834.1| - 9.1e-10 37.9 5.3 4.6e-08 32.3 0.3 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|344210514|ref|YP_004794834.1| - 1.8e-06 27.2 0.9 1.8e-06 27.2 0.6 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344210514|ref|YP_004794834.1| - 1.4e-05 24.1 8.0 0.0002 20.3 0.4 3.4 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.19 gi|344210514|ref|YP_004794834.1| - 6.5e-05 21.9 20.3 0.053 12.4 1.0 4.5 3 2 1 5 5 5 3 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|344210514|ref|YP_004794834.1| - 0.0004 20.0 0.9 0.003 17.2 0.1 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|344210514|ref|YP_004794834.1| - 0.00042 20.4 3.1 0.017 15.2 1.4 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|344210514|ref|YP_004794834.1| - 0.00059 19.2 0.1 0.00059 19.2 0.1 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|344210514|ref|YP_004794834.1| - 0.0012 18.0 10.2 0.1 11.6 0.7 3.2 2 1 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|344210514|ref|YP_004794834.1| - 0.0014 17.2 6.8 0.036 12.5 0.1 3.4 3 1 1 4 4 4 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|344210514|ref|YP_004794834.1| - 0.0026 17.7 5.3 0.14 12.2 1.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|344210514|ref|YP_004794834.1| - 0.0039 17.4 0.2 0.17 12.1 0.0 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding XdhC_C PF13478.1 gi|344210514|ref|YP_004794834.1| - 0.0068 16.7 0.3 0.095 13.0 0.1 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|344210514|ref|YP_004794834.1| - 0.019 14.5 1.2 0.036 13.6 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Prok-JAB PF14464.1 gi|344210514|ref|YP_004794834.1| - 0.033 13.7 0.1 0.98 9.0 0.0 2.5 2 0 0 2 2 2 0 Prokaryotic homologs of the JAB domain Thi4 PF01946.12 gi|344210514|ref|YP_004794834.1| - 0.035 13.2 1.2 5.8 5.9 0.0 2.5 2 0 0 2 2 2 0 Thi4 family DUF3815 PF12821.2 gi|344210515|ref|YP_004794835.1| - 0.036 14.0 3.8 0.18 11.7 1.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3815) PGG PF13962.1 gi|344210515|ref|YP_004794835.1| - 0.056 13.0 0.4 0.07 12.7 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF2665 PF11654.3 gi|344210515|ref|YP_004794835.1| - 0.085 12.4 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2665) PepSY_TM_2 PF13703.1 gi|344210515|ref|YP_004794835.1| - 0.13 12.4 3.5 1.4 9.1 2.7 2.0 1 1 1 2 2 2 0 PepSY-associated TM helix BatA PF07584.6 gi|344210515|ref|YP_004794835.1| - 0.15 12.2 1.0 0.66 10.2 0.0 2.2 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal MatC_N PF07158.6 gi|344210515|ref|YP_004794835.1| - 0.58 9.9 5.7 0.64 9.8 0.3 2.0 1 1 1 2 2 2 0 Dicarboxylate carrier protein MatC N-terminus 2-oxoacid_dh PF00198.18 gi|344210516|ref|YP_004794836.1| - 6.1e-82 274.3 0.0 8.5e-82 273.8 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|344210516|ref|YP_004794836.1| - 2.9e-24 84.4 1.0 6.4e-24 83.3 0.7 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|344210516|ref|YP_004794836.1| - 5.5e-23 80.3 3.8 4.2e-18 64.6 0.9 2.8 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|344210516|ref|YP_004794836.1| - 1.6e-11 43.7 2.1 4.2e-06 26.3 0.4 3.1 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|344210516|ref|YP_004794836.1| - 1.1e-05 24.7 0.7 0.0037 16.4 0.3 2.9 2 1 1 3 3 3 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|344210516|ref|YP_004794836.1| - 7.4e-05 23.0 1.6 0.0013 19.0 0.2 2.7 1 1 1 2 2 2 1 HlyD family secretion protein GCV_H PF01597.14 gi|344210516|ref|YP_004794836.1| - 0.00021 20.9 0.4 0.00051 19.7 0.2 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein CAT PF00302.13 gi|344210516|ref|YP_004794836.1| - 0.0055 16.3 0.0 0.15 11.6 0.0 2.1 2 0 0 2 2 2 1 Chloramphenicol acetyltransferase Angiomotin_C PF12240.3 gi|344210516|ref|YP_004794836.1| - 0.0058 16.1 0.5 0.013 15.0 0.4 1.5 1 0 0 1 1 1 1 Angiomotin C terminal PYNP_C PF07831.8 gi|344210516|ref|YP_004794836.1| - 0.023 14.1 0.1 0.91 9.0 0.0 2.7 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain RnfC_N PF13375.1 gi|344210516|ref|YP_004794836.1| - 0.024 14.3 0.4 0.064 12.9 0.3 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain Transket_pyr PF02779.19 gi|344210517|ref|YP_004794837.1| - 6.8e-50 169.0 0.0 8.9e-50 168.6 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|344210517|ref|YP_004794837.1| - 1.2e-38 131.8 0.1 2.1e-38 131.0 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|344210518|ref|YP_004794838.1| - 3.1e-88 295.3 0.0 3.7e-88 295.1 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|344210518|ref|YP_004794838.1| - 1.1e-06 27.7 0.0 1.6e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|344210518|ref|YP_004794838.1| - 1.2e-05 24.3 0.1 3.2e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.1 gi|344210518|ref|YP_004794838.1| - 0.066 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|344210519|ref|YP_004794839.1| - 4.8e-11 43.0 0.1 1.4e-10 41.5 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|344210519|ref|YP_004794839.1| - 0.096 12.5 0.1 6.7 6.6 0.0 2.9 2 1 1 3 3 3 0 B12 binding domain Methyltransf_11 PF08241.7 gi|344210520|ref|YP_004794840.1| - 4e-14 52.8 0.1 2.3e-13 50.4 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344210520|ref|YP_004794840.1| - 1.8e-13 51.0 0.4 5.8e-13 49.4 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344210520|ref|YP_004794840.1| - 1.3e-11 44.4 0.1 2.4e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344210520|ref|YP_004794840.1| - 3.7e-11 43.2 0.3 5.5e-10 39.5 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344210520|ref|YP_004794840.1| - 1.1e-08 35.4 0.0 3.2e-08 33.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210520|ref|YP_004794840.1| - 3.6e-07 29.8 0.0 6.9e-07 28.9 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344210520|ref|YP_004794840.1| - 4.4e-07 29.9 1.3 8.1e-07 29.0 0.6 1.8 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|344210520|ref|YP_004794840.1| - 2.7e-06 26.6 0.0 4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|344210520|ref|YP_004794840.1| - 5.1e-06 25.7 0.0 1.1e-05 24.6 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|344210520|ref|YP_004794840.1| - 4.3e-05 22.9 0.0 7.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.15 gi|344210520|ref|YP_004794840.1| - 0.00014 21.0 0.0 0.00018 20.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Crust_neuro_H PF03858.8 gi|344210520|ref|YP_004794840.1| - 0.041 14.4 0.1 1.8 9.2 0.0 2.7 2 0 0 2 2 2 0 Crustacean neurohormone H 3HCDH_N PF02737.13 gi|344210520|ref|YP_004794840.1| - 0.042 13.4 0.2 0.1 12.2 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF938 PF06080.7 gi|344210520|ref|YP_004794840.1| - 0.082 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.14 gi|344210520|ref|YP_004794840.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DEAD PF00270.24 gi|344210521|ref|YP_004794841.1| - 6.8e-28 97.2 0.0 1.7e-27 95.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|344210521|ref|YP_004794841.1| - 1.3e-16 60.6 0.0 2e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|344210521|ref|YP_004794841.1| - 5.5e-09 35.7 0.0 1.7e-08 34.1 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|344210521|ref|YP_004794841.1| - 3e-07 30.4 0.0 5.5e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|344210521|ref|YP_004794841.1| - 0.00011 22.3 1.6 0.00059 19.9 1.1 2.3 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_10 PF12846.2 gi|344210521|ref|YP_004794841.1| - 0.016 14.6 0.0 0.16 11.3 0.0 2.3 2 1 0 2 2 2 0 AAA-like domain T2SE PF00437.15 gi|344210521|ref|YP_004794841.1| - 0.087 11.7 0.0 0.18 10.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein HAD_2 PF13419.1 gi|344210523|ref|YP_004794843.1| - 6.5e-20 72.0 0.2 8e-20 71.7 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344210523|ref|YP_004794843.1| - 3.1e-16 60.4 0.1 1.5e-14 54.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344210523|ref|YP_004794843.1| - 7.8e-11 41.5 0.3 2.3e-10 40.0 0.2 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|344210523|ref|YP_004794843.1| - 0.00021 21.5 0.0 0.00024 21.3 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344210523|ref|YP_004794843.1| - 0.002 17.7 0.0 0.0032 17.1 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|344210523|ref|YP_004794843.1| - 0.0035 17.2 0.0 0.041 13.7 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase zf-C4_Topoisom PF01396.14 gi|344210524|ref|YP_004794844.1| - 4.5e-08 32.4 11.1 4.2e-06 26.1 0.1 3.7 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|344210524|ref|YP_004794844.1| - 3.7e-07 29.5 0.0 4.8e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zinc-ribbons_6 PF07191.7 gi|344210524|ref|YP_004794844.1| - 0.0055 16.4 5.8 0.031 14.0 0.7 2.7 2 2 0 2 2 2 1 zinc-ribbons zf-TFIIB PF13453.1 gi|344210524|ref|YP_004794844.1| - 0.017 14.3 12.6 0.06 12.5 0.0 4.0 3 1 1 4 4 4 0 Transcription factor zinc-finger Auto_anti-p27 PF06677.7 gi|344210524|ref|YP_004794844.1| - 0.086 12.6 11.0 3.8 7.3 0.0 4.5 4 1 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ADK_lid PF05191.9 gi|344210524|ref|YP_004794844.1| - 0.092 12.4 0.7 0.092 12.4 0.5 3.7 4 0 0 4 4 4 0 Adenylate kinase, active site lid HypA PF01155.14 gi|344210524|ref|YP_004794844.1| - 0.18 11.4 3.9 0.67 9.6 0.9 2.6 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|344210524|ref|YP_004794844.1| - 0.21 11.4 8.0 4.4 7.2 1.5 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.1 gi|344210524|ref|YP_004794844.1| - 2.3 8.0 10.2 3.4 7.4 1.6 4.0 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|344210524|ref|YP_004794844.1| - 8.4 6.1 11.8 0.95 9.2 0.6 4.0 4 1 0 4 4 4 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|344210524|ref|YP_004794844.1| - 9.4 5.8 9.5 12 5.5 0.0 4.0 3 1 0 3 3 3 0 A2L zinc ribbon domain tRNA_int_endo PF01974.12 gi|344210525|ref|YP_004794845.1| - 4.9e-40 135.2 0.0 8.7e-23 79.9 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|344210525|ref|YP_004794845.1| - 1.9e-30 104.2 0.3 4.4e-15 54.9 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA-synt_1b PF00579.20 gi|344210526|ref|YP_004794846.1| - 1.5e-43 148.9 0.0 8.2e-26 90.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA-synt_2d PF01409.15 gi|344210527|ref|YP_004794847.1| - 2.6e-77 259.3 0.0 3.3e-77 259.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|344210527|ref|YP_004794847.1| - 9.3e-06 24.6 0.5 0.0097 14.7 0.1 2.8 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_45 PF14947.1 gi|344210527|ref|YP_004794847.1| - 0.022 14.5 0.0 0.95 9.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|344210527|ref|YP_004794847.1| - 0.048 13.3 2.1 0.24 11.1 0.2 2.8 3 0 0 3 3 3 0 MarR family Mrr_N PF14338.1 gi|344210527|ref|YP_004794847.1| - 0.14 12.2 0.0 3.3 7.8 0.0 2.4 2 0 0 2 2 2 0 Mrr N-terminal domain B5 PF03484.10 gi|344210528|ref|YP_004794848.1| - 1.1e-13 50.8 0.2 2.2e-12 46.6 0.2 2.5 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|344210528|ref|YP_004794848.1| - 8e-12 44.9 0.0 1.3e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|344210528|ref|YP_004794848.1| - 0.00094 18.4 0.0 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) RDD PF06271.7 gi|344210529|ref|YP_004794849.1| - 6.3e-15 55.2 0.9 7.6e-15 55.0 0.6 1.1 1 0 0 1 1 1 1 RDD family DHO_dh PF01180.16 gi|344210530|ref|YP_004794850.1| - 4.1e-80 268.9 0.0 4.7e-80 268.6 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|344210530|ref|YP_004794850.1| - 0.0026 16.9 0.4 0.0049 16.0 0.2 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|344210530|ref|YP_004794850.1| - 0.14 11.4 0.6 0.25 10.5 0.2 1.5 1 1 1 2 2 2 0 PcrB family SymE_toxin PF08845.5 gi|344210531|ref|YP_004794851.1| - 0.011 15.5 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|344210531|ref|YP_004794851.1| - 0.013 15.1 0.2 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|344210532|ref|YP_004794852.1| - 8.8e-44 147.4 0.2 1e-43 147.2 0.1 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF4097 PF13349.1 gi|344210536|ref|YP_004794856.1| - 0.13 11.8 0.9 0.2 11.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) DUF4131 PF13567.1 gi|344210537|ref|YP_004794857.1| - 0.13 11.6 0.3 0.15 11.4 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Laminin_G_3 PF13385.1 gi|344210538|ref|YP_004794858.1| - 1.7e-22 80.3 2.6 3.8e-22 79.1 1.8 1.6 1 0 0 1 1 1 1 Concanavalin A-like lectin/glucanases superfamily Sialidase PF02973.11 gi|344210538|ref|YP_004794858.1| - 0.15 10.9 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Sialidase, N-terminal domain Peptidase_S24 PF00717.18 gi|344210539|ref|YP_004794859.1| - 2.4e-08 33.4 0.0 5.7e-08 32.2 0.0 1.7 1 0 0 1 1 1 1 Peptidase S24-like HTH_AraC PF00165.18 gi|344210542|ref|YP_004794862.1| - 0.065 13.0 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF3304 PF11745.3 gi|344210544|ref|YP_004794864.1| - 0.066 13.4 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3304) DUF2628 PF10947.3 gi|344210545|ref|YP_004794865.1| - 4.7 7.0 5.6 5.2 6.9 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) RNA_pol_Rpo13 PF12136.3 gi|344210547|ref|YP_004794867.1| - 1.1 8.9 5.1 2.1 8.1 0.1 2.2 2 1 0 2 2 2 0 RNA polymerase Rpo13 subunit HTH domain NIR_SIR PF01077.17 gi|344210549|ref|YP_004794869.1| - 1.7e-43 147.7 0.0 3.6e-31 107.6 0.0 2.7 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|344210549|ref|YP_004794869.1| - 3.3e-38 129.1 0.0 3.3e-19 68.2 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain UvrB PF12344.3 gi|344210551|ref|YP_004794871.1| - 1.9e-18 65.7 1.3 1.9e-18 65.7 0.9 1.9 2 0 0 2 2 2 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|344210551|ref|YP_004794871.1| - 1.3e-14 53.8 0.0 6.4e-14 51.5 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain UVR PF02151.14 gi|344210551|ref|YP_004794871.1| - 1.7e-10 40.0 10.5 7.8e-10 37.9 7.3 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.10 gi|344210551|ref|YP_004794871.1| - 5e-09 36.2 0.3 4.5e-08 33.1 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|344210551|ref|YP_004794871.1| - 2.2e-05 24.0 1.7 0.0012 18.3 0.0 3.7 3 1 1 4 4 4 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|344210551|ref|YP_004794871.1| - 0.0011 18.7 0.2 2.1 8.1 0.0 3.6 4 0 0 4 4 4 2 Part of AAA domain AAA PF00004.24 gi|344210551|ref|YP_004794871.1| - 0.02 15.0 0.6 1.7 8.8 0.0 3.7 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) UB2H PF14814.1 gi|344210551|ref|YP_004794871.1| - 0.023 14.3 0.0 0.061 13.0 0.0 1.7 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|344210551|ref|YP_004794871.1| - 0.056 13.2 0.0 0.056 13.2 0.0 2.7 4 0 0 4 4 4 0 Domain of unknown function DUF87 NACHT PF05729.7 gi|344210551|ref|YP_004794871.1| - 0.12 12.0 0.2 2 8.0 0.0 2.3 2 0 0 2 2 2 0 NACHT domain DELLA PF12041.3 gi|344210551|ref|YP_004794871.1| - 0.18 11.4 1.2 0.65 9.7 0.5 2.1 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal Methyltransf_18 PF12847.2 gi|344210552|ref|YP_004794872.1| - 3e-09 37.4 0.2 4.3e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344210552|ref|YP_004794872.1| - 4.8e-06 26.0 0.2 9.7e-06 25.0 0.1 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|344210552|ref|YP_004794872.1| - 0.00067 19.6 0.7 0.00098 19.1 0.5 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344210552|ref|YP_004794872.1| - 0.0094 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344210552|ref|YP_004794872.1| - 0.014 15.7 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|344210552|ref|YP_004794872.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.3 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|344210552|ref|YP_004794872.1| - 0.018 14.0 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase GATase_3 PF07685.9 gi|344210552|ref|YP_004794872.1| - 0.081 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain RrnaAD PF00398.15 gi|344210552|ref|YP_004794872.1| - 0.11 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase TP_methylase PF00590.15 gi|344210553|ref|YP_004794873.1| - 1.6e-36 126.0 0.2 2.1e-36 125.5 0.1 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|344210553|ref|YP_004794873.1| - 0.016 15.7 0.3 0.055 14.0 0.1 2.1 1 1 2 3 3 3 0 Glyoxalase-like domain TP_methylase PF00590.15 gi|344210554|ref|YP_004794874.1| - 2.5e-37 128.6 0.3 3.1e-37 128.3 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|344210554|ref|YP_004794874.1| - 0.0045 17.1 0.0 0.0066 16.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily RraB PF06877.6 gi|344210554|ref|YP_004794874.1| - 0.1 13.2 0.0 0.32 11.6 0.0 1.8 2 0 0 2 2 2 0 Regulator of ribonuclease activity B CbiG_N PF11760.3 gi|344210555|ref|YP_004794875.1| - 5.6e-30 102.8 0.0 1.3e-29 101.6 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|344210555|ref|YP_004794875.1| - 1.7e-28 99.2 0.5 5.3e-28 97.7 0.0 2.0 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.19 gi|344210555|ref|YP_004794875.1| - 0.019 15.2 1.4 0.12 12.6 0.2 2.7 3 0 0 3 3 3 0 AIR synthase related protein, N-terminal domain DUF2493 PF10686.4 gi|344210555|ref|YP_004794875.1| - 1.5 8.4 4.8 5 6.7 0.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2493) adh_short PF00106.20 gi|344210556|ref|YP_004794876.1| - 2.1e-34 118.8 0.2 2.6e-34 118.5 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344210556|ref|YP_004794876.1| - 1.3e-30 106.9 0.0 1.5e-30 106.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344210556|ref|YP_004794876.1| - 1.2e-13 51.1 0.1 1.7e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344210556|ref|YP_004794876.1| - 2.5e-06 27.1 0.1 3.8e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344210556|ref|YP_004794876.1| - 6.5e-06 25.0 0.6 1e-05 24.4 0.2 1.5 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1537 PF07005.6 gi|344210556|ref|YP_004794876.1| - 0.13 11.9 0.2 0.27 10.8 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF1537 NAD_binding_10 PF13460.1 gi|344210556|ref|YP_004794876.1| - 0.16 11.9 0.8 0.29 11.1 0.5 1.7 1 1 0 1 1 1 0 NADH(P)-binding TP_methylase PF00590.15 gi|344210557|ref|YP_004794877.1| - 1e-40 139.7 0.0 1.2e-40 139.4 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|344210558|ref|YP_004794878.1| - 9.2e-38 130.0 0.3 1.1e-37 129.7 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF566 PF04484.7 gi|344210558|ref|YP_004794878.1| - 9.7 5.6 11.6 13 5.1 8.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF566) Fer4_15 PF13459.1 gi|344210559|ref|YP_004794879.1| - 2.3e-15 56.8 6.8 3.5e-15 56.3 4.7 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|344210559|ref|YP_004794879.1| - 1.5e-05 25.2 4.3 2.8e-05 24.4 3.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|344210559|ref|YP_004794879.1| - 0.099 12.4 0.4 0.34 10.7 0.3 1.8 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.2 gi|344210559|ref|YP_004794879.1| - 7.2 6.6 6.2 1.4 8.9 0.2 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain LAGLIDADG_3 PF14528.1 gi|344210560|ref|YP_004794880.1| - 0.0015 18.7 0.0 0.0033 17.6 0.0 1.6 2 0 0 2 2 2 1 LAGLIDADG-like domain Rhabdo_NV PF02484.10 gi|344210560|ref|YP_004794880.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Rhabdovirus Non-virion protein DUF4409 PF14365.1 gi|344210560|ref|YP_004794880.1| - 0.042 14.0 0.0 0.067 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4409) CbiX PF01903.12 gi|344210561|ref|YP_004794881.1| - 4e-44 149.0 0.1 5.9e-22 77.7 0.2 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|344210561|ref|YP_004794881.1| - 5.8e-08 32.4 0.1 1e-07 31.6 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|344210561|ref|YP_004794881.1| - 5.1e-05 22.4 0.0 0.027 13.5 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|344210561|ref|YP_004794881.1| - 0.0035 17.3 0.0 0.0091 16.0 0.0 1.7 2 0 0 2 2 2 1 Sucrase/ferredoxin-like DUF1636 PF07845.6 gi|344210561|ref|YP_004794881.1| - 0.0082 16.3 0.9 0.57 10.4 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1636) Guanylin PF02058.10 gi|344210561|ref|YP_004794881.1| - 0.14 12.1 0.7 0.37 10.8 0.5 1.7 1 1 0 1 1 1 0 Guanylin precursor DUF3209 PF11483.3 gi|344210562|ref|YP_004794882.1| - 2.1e-63 212.1 5.8 2.3e-63 211.9 4.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) PQQ_2 PF13360.1 gi|344210563|ref|YP_004794883.1| - 5.4e-13 48.9 2.5 2.1e-09 37.1 0.3 2.6 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|344210563|ref|YP_004794883.1| - 3.6e-10 39.7 28.9 0.0084 16.3 0.1 8.7 8 1 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|344210563|ref|YP_004794883.1| - 0.00075 18.9 14.3 0.83 9.3 0.1 6.8 7 1 1 8 8 8 3 PQQ enzyme repeat DUF3552 PF12072.3 gi|344210564|ref|YP_004794884.1| - 6.9e-12 45.0 26.5 2.7e-08 33.2 9.4 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|344210564|ref|YP_004794884.1| - 7.9e-05 20.7 3.8 9.1e-05 20.5 2.7 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF4200 PF13863.1 gi|344210564|ref|YP_004794884.1| - 0.011 15.6 22.1 0.12 12.3 14.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.7 gi|344210564|ref|YP_004794884.1| - 0.057 13.1 16.3 0.99 9.1 3.2 2.3 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF1469 PF07332.6 gi|344210564|ref|YP_004794884.1| - 0.079 12.6 5.2 0.13 12.0 3.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Spc7 PF08317.6 gi|344210564|ref|YP_004794884.1| - 0.17 10.4 9.1 0.23 10.0 6.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein HrpB7 PF09486.5 gi|344210564|ref|YP_004794884.1| - 0.24 11.3 22.0 0.063 13.2 3.8 2.2 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Nup54 PF13874.1 gi|344210564|ref|YP_004794884.1| - 1.4 8.6 11.0 1.8 8.2 6.9 1.7 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF390 PF04094.9 gi|344210564|ref|YP_004794884.1| - 1.4 6.8 19.3 1.7 6.5 13.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF390) GAGA_bind PF06217.7 gi|344210564|ref|YP_004794884.1| - 2.6 7.9 9.1 11 5.8 6.3 1.8 1 1 0 1 1 1 0 GAGA binding protein-like family UPF0449 PF15136.1 gi|344210564|ref|YP_004794884.1| - 7.9 6.7 9.2 0.88 9.8 1.5 2.4 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 DUF4174 PF13778.1 gi|344210564|ref|YP_004794884.1| - 9.8 6.3 9.9 28 4.8 1.0 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4174) CbtA PF09490.5 gi|344210565|ref|YP_004794885.1| - 8.6e-09 35.0 29.0 1.7e-07 30.8 20.1 2.5 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) CbtB PF09489.5 gi|344210566|ref|YP_004794886.1| - 2e-09 37.2 4.6 2.6e-09 36.8 3.2 1.3 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) VWA_2 PF13519.1 gi|344210567|ref|YP_004794887.1| - 2.6e-19 69.9 3.7 7.4e-19 68.4 2.5 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|344210567|ref|YP_004794887.1| - 1.8e-11 44.0 0.0 3e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|344210567|ref|YP_004794887.1| - 2.2e-11 43.3 0.0 5.9e-09 35.3 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|344210567|ref|YP_004794887.1| - 1e-09 38.2 0.0 8.3e-06 25.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|344210567|ref|YP_004794887.1| - 0.00019 20.3 0.0 0.00074 18.4 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|344210567|ref|YP_004794887.1| - 0.0025 17.3 0.0 0.094 12.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|344210567|ref|YP_004794887.1| - 0.0039 17.2 3.7 0.006 16.5 0.0 3.0 4 0 0 4 4 4 1 AAA ATPase domain AAA_22 PF13401.1 gi|344210567|ref|YP_004794887.1| - 0.062 13.4 0.0 1.1 9.4 0.0 2.8 2 1 0 2 2 2 0 AAA domain Daxx PF03344.10 gi|344210567|ref|YP_004794887.1| - 9.5 4.5 19.3 15 3.9 13.4 1.3 1 0 0 1 1 1 0 Daxx Family CobN-Mg_chel PF02514.11 gi|344210568|ref|YP_004794888.1| - 0 1248.9 0.0 0 1248.1 0.0 1.3 2 0 0 2 2 2 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|344210568|ref|YP_004794888.1| - 0.015 14.8 0.0 0.042 13.4 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain CbiC PF02570.10 gi|344210569|ref|YP_004794889.1| - 6.9e-52 175.7 0.7 8.2e-52 175.5 0.5 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.15 gi|344210570|ref|YP_004794890.1| - 4.5e-32 111.4 0.2 5.3e-32 111.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2062 PF09835.4 gi|344210571|ref|YP_004794891.1| - 1.1e-23 83.5 2.3 1.3e-23 83.3 1.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) DUF1469 PF07332.6 gi|344210571|ref|YP_004794891.1| - 0.041 13.5 0.1 0.041 13.5 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1469) DUF2755 PF10954.3 gi|344210571|ref|YP_004794891.1| - 0.051 13.2 0.8 4.6 7.0 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2755) P12 PF12669.2 gi|344210571|ref|YP_004794891.1| - 0.67 10.1 2.9 2.7 8.2 0.3 2.2 2 0 0 2 2 2 0 Virus attachment protein p12 family DUF202 PF02656.10 gi|344210571|ref|YP_004794891.1| - 0.7 10.1 3.1 3.8 7.8 1.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) RseC_MucC PF04246.7 gi|344210571|ref|YP_004794891.1| - 1 8.9 3.5 1.1 8.8 0.1 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC CopD PF05425.8 gi|344210571|ref|YP_004794891.1| - 1.1 9.5 6.7 0.1 12.7 0.9 1.9 1 1 1 2 2 2 0 Copper resistance protein D CbiX PF01903.12 gi|344210572|ref|YP_004794892.1| - 7.3e-20 71.0 0.4 1.8e-10 40.8 0.0 2.2 2 0 0 2 2 2 2 CbiX TrkA_C PF02080.16 gi|344210573|ref|YP_004794893.1| - 1.2e-17 63.2 0.1 2.9e-17 62.0 0.1 1.7 2 0 0 2 2 2 1 TrkA-C domain TOBE_2 PF08402.5 gi|344210573|ref|YP_004794893.1| - 0.12 12.4 1.0 1.7 8.7 0.0 2.3 2 0 0 2 2 2 0 TOBE domain Na_H_Exchanger PF00999.16 gi|344210574|ref|YP_004794894.1| - 7.5e-54 182.6 42.7 9.2e-54 182.4 29.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family ADH_zinc_N PF00107.21 gi|344210575|ref|YP_004794895.1| - 1.2e-41 141.2 0.3 5.9e-41 139.0 0.1 2.1 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|344210575|ref|YP_004794895.1| - 3.5e-21 76.4 0.0 7.7e-21 75.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|344210575|ref|YP_004794895.1| - 2e-18 66.1 0.0 4.2e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.16 gi|344210575|ref|YP_004794895.1| - 9.7e-05 21.9 0.9 0.0025 17.4 0.1 2.5 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|344210575|ref|YP_004794895.1| - 0.00038 20.4 0.4 0.00056 19.9 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|344210575|ref|YP_004794895.1| - 0.00068 19.5 0.7 0.0011 18.9 0.3 1.5 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Eno-Rase_NADH_b PF12242.3 gi|344210575|ref|YP_004794895.1| - 0.00086 19.0 0.2 0.0019 17.9 0.1 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase adh_short PF00106.20 gi|344210575|ref|YP_004794895.1| - 0.0014 18.5 0.4 0.0045 16.9 0.6 1.6 2 0 0 2 2 2 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|344210575|ref|YP_004794895.1| - 0.0031 17.7 0.3 0.0065 16.7 0.2 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|344210575|ref|YP_004794895.1| - 0.008 15.2 0.0 0.55 9.2 0.0 2.3 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.16 gi|344210575|ref|YP_004794895.1| - 0.029 13.7 0.2 0.043 13.2 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|344210575|ref|YP_004794895.1| - 0.076 12.2 0.1 0.12 11.5 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family Methyltransf_11 PF08241.7 gi|344210575|ref|YP_004794895.1| - 0.092 13.2 0.1 0.23 11.9 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain DUF1427 PF07235.6 gi|344210576|ref|YP_004794896.1| - 8.9e-07 28.9 5.7 9.5e-07 28.8 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) TauE PF01925.14 gi|344210576|ref|YP_004794896.1| - 0.054 12.9 3.9 0.057 12.8 2.7 1.0 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE Phage_holin_2 PF04550.7 gi|344210576|ref|YP_004794896.1| - 0.19 11.8 2.5 0.21 11.7 1.7 1.1 1 0 0 1 1 1 0 Phage holin family 2 DUF2273 PF10031.4 gi|344210576|ref|YP_004794896.1| - 1.2 8.7 7.4 2.5 7.7 1.2 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) Zip PF02535.17 gi|344210577|ref|YP_004794897.1| - 2.2 7.2 7.5 3.3 6.6 5.2 1.4 1 1 0 1 1 1 0 ZIP Zinc transporter CarboxypepD_reg PF13620.1 gi|344210578|ref|YP_004794898.1| - 3.7e-14 52.5 15.7 1.7e-11 44.0 3.4 4.3 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain DDOST_48kD PF03345.9 gi|344210578|ref|YP_004794898.1| - 2.4e-09 36.2 0.0 4.2e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Oligosaccharyltransferase 48 kDa subunit beta DUF4480 PF13715.1 gi|344210578|ref|YP_004794898.1| - 2.1e-08 34.0 2.5 8.5e-05 22.5 0.4 3.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) ABC_transp_aux PF09822.4 gi|344210578|ref|YP_004794898.1| - 3.4e-08 33.2 0.0 7.6e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 ABC-type uncharacterized transport system PHP PF02811.14 gi|344210578|ref|YP_004794898.1| - 5.4e-08 32.8 0.0 8.7e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 PHP domain PEGA PF08308.6 gi|344210578|ref|YP_004794898.1| - 7.4e-06 25.6 2.4 0.7 9.7 0.1 4.2 3 0 0 3 3 3 3 PEGA domain DUF4350 PF14258.1 gi|344210578|ref|YP_004794898.1| - 0.00018 21.6 0.0 0.0017 18.5 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|344210578|ref|YP_004794898.1| - 0.012 15.2 0.6 0.012 15.2 0.4 2.2 2 1 0 2 2 2 0 Trehalose utilisation DUF1355 PF07090.6 gi|344210578|ref|YP_004794898.1| - 0.02 14.2 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1355) IU_nuc_hydro PF01156.14 gi|344210579|ref|YP_004794899.1| - 1.8e-78 263.9 4.1 2e-78 263.7 2.8 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase 5_nucleotid_C PF02872.13 gi|344210580|ref|YP_004794900.1| - 5.2e-50 169.4 0.7 1.2e-49 168.3 0.5 1.6 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain TAT_signal PF10518.4 gi|344210580|ref|YP_004794900.1| - 0.058 13.4 0.8 0.13 12.2 0.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|344210580|ref|YP_004794900.1| - 0.11 11.7 0.2 0.24 10.5 0.2 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Iron_transport PF10634.4 gi|344210581|ref|YP_004794901.1| - 1.3e-05 25.1 0.0 5.6e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.4 gi|344210582|ref|YP_004794902.1| - 0.026 14.5 1.6 0.084 12.9 1.1 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MR_MLE_C PF13378.1 gi|344210583|ref|YP_004794903.1| - 4.5e-14 52.3 0.1 9e-14 51.3 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|344210583|ref|YP_004794903.1| - 5e-12 46.1 0.3 1.5e-11 44.6 0.1 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|344210583|ref|YP_004794903.1| - 2.9e-11 43.3 0.0 5e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RestrictionMunI PF11407.3 gi|344210583|ref|YP_004794903.1| - 0.067 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II restriction enzyme MunI Lactamase_B_2 PF12706.2 gi|344210584|ref|YP_004794904.1| - 1.2e-15 57.5 0.1 1.8e-15 57.0 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|344210584|ref|YP_004794904.1| - 3.7e-13 49.4 0.0 5.2e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain GFO_IDH_MocA PF01408.17 gi|344210585|ref|YP_004794905.1| - 1.9e-23 83.2 0.2 3.5e-23 82.3 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|344210585|ref|YP_004794905.1| - 2.4e-05 24.1 0.0 4.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Aldedh PF00171.17 gi|344210586|ref|YP_004794906.1| - 3.5e-161 536.6 1.2 4e-161 536.4 0.8 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family zf-Di19 PF05605.7 gi|344210587|ref|YP_004794907.1| - 0.023 14.7 0.6 0.031 14.3 0.4 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Peptidase_M48 PF01435.13 gi|344210588|ref|YP_004794908.1| - 1e-32 113.5 0.0 1.4e-32 113.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|344210588|ref|YP_004794908.1| - 5.2e-07 28.9 0.0 8.8e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 FAA_hydrolase PF01557.13 gi|344210589|ref|YP_004794909.1| - 3.3e-53 180.3 0.0 4.2e-53 180.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family UvrC_HhH_N PF08459.6 gi|344210590|ref|YP_004794910.1| - 5.7e-44 149.3 0.0 1.1e-43 148.4 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.1 gi|344210590|ref|YP_004794910.1| - 2.2e-11 43.7 0.0 6e-11 42.3 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|344210590|ref|YP_004794910.1| - 5.3e-11 42.2 0.0 1.2e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.18 gi|344210590|ref|YP_004794910.1| - 9.8e-11 40.7 0.1 8.8e-07 28.2 0.0 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix motif UVR PF02151.14 gi|344210590|ref|YP_004794910.1| - 1.2e-08 34.1 4.3 2.6e-08 33.1 1.1 2.5 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|344210590|ref|YP_004794910.1| - 1.6e-07 31.5 0.0 3e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|344210590|ref|YP_004794910.1| - 0.00082 19.5 0.0 0.0068 16.6 0.0 2.2 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.1 gi|344210590|ref|YP_004794910.1| - 0.0038 17.3 0.0 2.2 8.5 0.0 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|344210590|ref|YP_004794910.1| - 0.021 14.7 0.0 0.61 10.0 0.0 2.4 1 1 0 1 1 1 0 Helix-hairpin-helix motif DUF588 PF04535.7 gi|344210592|ref|YP_004794912.1| - 0.48 9.9 5.2 0.74 9.3 3.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF588) Aminotran_5 PF00266.14 gi|344210593|ref|YP_004794913.1| - 1.5e-27 96.3 0.0 1.9e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V MCPsignal PF00015.16 gi|344210596|ref|YP_004794916.1| - 4.9e-41 140.6 24.3 4.9e-41 140.6 16.9 4.2 2 1 3 5 5 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344210596|ref|YP_004794916.1| - 1.4e-14 54.0 1.3 1.4e-14 54.0 0.9 6.6 6 2 0 6 6 6 2 HAMP domain DUF948 PF06103.6 gi|344210596|ref|YP_004794916.1| - 7.1e-07 28.9 27.4 0.015 15.1 0.8 5.2 3 2 1 5 5 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|344210596|ref|YP_004794916.1| - 1.2e-06 28.2 28.4 0.0058 16.3 0.7 5.0 3 2 2 5 5 5 3 Laminin Domain II BLOC1_2 PF10046.4 gi|344210596|ref|YP_004794916.1| - 6.4e-05 23.0 18.0 0.073 13.2 0.1 5.2 4 1 1 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 TPR_MLP1_2 PF07926.7 gi|344210596|ref|YP_004794916.1| - 0.00041 20.1 17.1 0.11 12.2 0.6 4.0 3 1 1 4 4 4 2 TPR/MLP1/MLP2-like protein Reo_sigmaC PF04582.7 gi|344210596|ref|YP_004794916.1| - 0.00062 19.0 26.3 0.0045 16.2 4.0 3.9 1 1 4 5 5 5 2 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|344210596|ref|YP_004794916.1| - 0.0024 16.6 12.9 0.12 11.0 1.0 3.7 3 2 0 3 3 3 2 Spc7 kinetochore protein RmuC PF02646.11 gi|344210596|ref|YP_004794916.1| - 0.003 16.4 9.1 1.5 7.5 0.1 4.4 4 1 1 5 5 4 1 RmuC family AAA_13 PF13166.1 gi|344210596|ref|YP_004794916.1| - 0.0034 15.9 15.3 0.089 11.2 0.7 2.4 1 1 0 2 2 2 2 AAA domain NPV_P10 PF05531.7 gi|344210596|ref|YP_004794916.1| - 0.0039 17.4 23.7 0.58 10.4 1.4 5.0 2 1 2 4 4 4 2 Nucleopolyhedrovirus P10 protein IFT57 PF10498.4 gi|344210596|ref|YP_004794916.1| - 0.0047 15.7 14.0 0.0048 15.6 0.5 3.1 2 1 0 3 3 3 1 Intra-flagellar transport protein 57 WEMBL PF05701.6 gi|344210596|ref|YP_004794916.1| - 0.0048 15.4 3.3 0.0048 15.4 2.3 2.9 2 1 0 2 2 2 1 Weak chloroplast movement under blue light Laminin_I PF06008.9 gi|344210596|ref|YP_004794916.1| - 0.0079 15.5 24.8 0.092 12.0 1.6 4.7 1 1 3 5 5 5 2 Laminin Domain I CCDC155 PF14662.1 gi|344210596|ref|YP_004794916.1| - 0.011 15.3 3.3 0.011 15.3 2.3 4.1 3 2 1 4 4 4 0 Coiled-coil region of CCDC155 Sec5 PF15469.1 gi|344210596|ref|YP_004794916.1| - 0.019 14.6 1.9 1.4 8.5 0.1 3.3 1 1 1 2 2 2 0 Exocyst complex component Sec5 Mod_r PF07200.8 gi|344210596|ref|YP_004794916.1| - 0.028 14.3 8.2 1.1 9.2 0.2 4.3 3 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.17 gi|344210596|ref|YP_004794916.1| - 0.029 14.3 16.1 1.8 8.6 0.2 5.1 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DegS PF05384.6 gi|344210596|ref|YP_004794916.1| - 0.076 12.2 12.3 0.55 9.4 0.3 4.3 3 1 1 4 4 4 0 Sensor protein DegS Arfaptin PF06456.8 gi|344210596|ref|YP_004794916.1| - 0.12 11.7 3.7 0.22 10.8 0.0 2.6 2 1 0 2 2 2 0 Arfaptin-like domain IFT46_B_C PF12317.3 gi|344210596|ref|YP_004794916.1| - 0.15 11.4 2.7 0.77 9.0 0.1 3.0 3 1 1 4 4 4 0 Intraflagellar transport complex B protein 46 C terminal V_ATPase_I PF01496.14 gi|344210596|ref|YP_004794916.1| - 0.16 9.7 14.2 1.3 6.7 5.7 2.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Sec8_exocyst PF04048.9 gi|344210596|ref|YP_004794916.1| - 0.25 10.9 4.5 27 4.3 0.0 4.3 4 2 0 4 4 4 0 Sec8 exocyst complex component specific domain DUF1664 PF07889.7 gi|344210596|ref|YP_004794916.1| - 0.33 10.7 23.5 0.69 9.7 1.4 5.1 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.15 gi|344210596|ref|YP_004794916.1| - 0.37 10.5 15.3 1.1 9.0 0.6 4.8 3 2 1 4 4 4 0 Prefoldin subunit Syntaxin PF00804.20 gi|344210596|ref|YP_004794916.1| - 0.66 10.1 19.8 1.4 9.0 0.3 4.9 3 1 1 4 4 3 0 Syntaxin ERM PF00769.14 gi|344210596|ref|YP_004794916.1| - 0.96 8.9 24.7 0.58 9.6 0.4 3.3 2 1 0 3 3 3 0 Ezrin/radixin/moesin family BAR_2 PF10455.4 gi|344210596|ref|YP_004794916.1| - 0.99 8.2 12.8 0.017 14.0 1.0 2.9 2 1 1 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking E2R135 PF11570.3 gi|344210596|ref|YP_004794916.1| - 1.2 9.2 27.3 0.79 9.8 5.7 4.1 2 1 1 4 4 4 0 Coiled-coil receptor-binding R-domain of colicin E2 CENP-F_leu_zip PF10473.4 gi|344210596|ref|YP_004794916.1| - 1.5 8.6 21.3 0.4 10.5 0.3 4.5 3 2 2 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DASH_Dam1 PF08653.5 gi|344210596|ref|YP_004794916.1| - 1.8 8.3 4.1 27 4.6 0.1 4.3 5 0 0 5 5 3 0 DASH complex subunit Dam1 APG17 PF04108.7 gi|344210596|ref|YP_004794916.1| - 2 7.1 17.4 1.1 7.9 0.9 3.5 1 1 0 2 2 2 0 Autophagy protein Apg17 APG6 PF04111.7 gi|344210596|ref|YP_004794916.1| - 2.3 7.1 18.9 0.49 9.3 0.3 3.4 2 1 1 4 4 4 0 Autophagy protein Apg6 Cep57_CLD_2 PF14197.1 gi|344210596|ref|YP_004794916.1| - 2.5 8.1 16.7 2.6 8.0 1.2 4.5 5 0 0 5 5 3 0 Centrosome localisation domain of PPC89 Prominin PF05478.6 gi|344210596|ref|YP_004794916.1| - 2.5 5.5 14.1 2 5.8 0.9 3.4 1 1 2 4 4 4 0 Prominin DUF4200 PF13863.1 gi|344210596|ref|YP_004794916.1| - 4.4 7.2 15.2 6.4 6.7 0.6 4.3 3 1 1 4 4 4 0 Domain of unknown function (DUF4200) DinB_2 PF12867.2 gi|344210596|ref|YP_004794916.1| - 4.7 7.5 12.9 0.83 10.0 0.5 4.2 1 1 1 3 3 3 0 DinB superfamily DUF812 PF05667.6 gi|344210596|ref|YP_004794916.1| - 5.8 5.3 30.5 4.8 5.5 5.6 3.3 1 1 1 3 3 3 0 Protein of unknown function (DUF812) Tweety PF04906.8 gi|344210596|ref|YP_004794916.1| - 6.9 4.9 16.5 1.3 7.3 0.5 3.4 2 1 2 4 4 4 0 Tweety Alpha-2-MRAP_C PF06401.6 gi|344210596|ref|YP_004794916.1| - 8.3 6.1 7.3 3.6 7.3 2.3 2.5 1 1 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain ATG_C PF09333.6 gi|344210596|ref|YP_004794916.1| - 9.7 6.4 14.1 5 7.3 0.1 5.0 2 1 2 4 4 4 0 ATG C terminal domain DivIVA PF05103.8 gi|344210596|ref|YP_004794916.1| - 9.8 6.2 33.9 0.75 9.8 1.6 5.0 3 1 1 5 5 5 0 DivIVA protein Bac_rhodopsin PF01036.13 gi|344210597|ref|YP_004794917.1| - 8.5e-23 80.8 18.2 1e-22 80.5 12.6 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DNA_ligase_aden PF01653.13 gi|344210598|ref|YP_004794918.1| - 9.1e-109 363.2 0.0 1.1e-108 362.8 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|344210598|ref|YP_004794918.1| - 3.8e-28 96.9 1.5 7.4e-28 96.0 1.1 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_5 PF14520.1 gi|344210598|ref|YP_004794918.1| - 6.5e-18 64.6 2.7 5.8e-11 42.4 0.1 3.5 4 0 0 4 4 4 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|344210598|ref|YP_004794918.1| - 6.7e-18 64.3 0.4 4.5e-15 55.2 0.1 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif BRCT PF00533.21 gi|344210598|ref|YP_004794918.1| - 2.4e-11 43.5 0.0 5.2e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.11 gi|344210598|ref|YP_004794918.1| - 5.2e-07 29.2 3.2 1.4e-06 27.9 2.2 1.8 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.18 gi|344210598|ref|YP_004794918.1| - 0.0004 19.9 0.0 0.36 10.6 0.0 4.2 4 0 0 4 4 4 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|344210598|ref|YP_004794918.1| - 0.011 15.9 0.0 0.038 14.2 0.0 1.9 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Response_reg PF00072.19 gi|344210599|ref|YP_004794919.1| - 6.8e-20 71.1 0.0 1.4e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_3 PF08447.6 gi|344210599|ref|YP_004794919.1| - 4.6e-14 52.2 0.8 2e-13 50.2 0.0 2.4 3 0 0 3 3 3 1 PAS fold PAS_9 PF13426.1 gi|344210599|ref|YP_004794919.1| - 1.5e-10 41.3 0.0 0.0004 20.7 0.0 3.0 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|344210599|ref|YP_004794919.1| - 5.9e-10 39.1 3.7 1.4e-08 34.7 0.0 3.0 4 0 0 4 4 4 1 PAS fold PAS_8 PF13188.1 gi|344210599|ref|YP_004794919.1| - 0.00026 20.7 0.0 0.0012 18.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.10 gi|344210599|ref|YP_004794919.1| - 0.0023 17.9 0.0 0.0045 17.0 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.19 gi|344210599|ref|YP_004794919.1| - 0.015 15.0 0.0 0.19 11.4 0.0 2.7 3 0 0 3 3 3 0 PAS fold FleQ PF06490.6 gi|344210599|ref|YP_004794919.1| - 0.15 12.1 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ ABC2_membrane_2 PF12679.2 gi|344210600|ref|YP_004794920.1| - 5.2e-07 28.7 0.0 5.7e-07 28.6 0.0 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DC_STAMP PF07782.8 gi|344210600|ref|YP_004794920.1| - 0.029 13.9 0.1 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 DC-STAMP-like protein DUF1035 PF06281.7 gi|344210600|ref|YP_004794920.1| - 1.3 8.8 4.1 2.1 8.1 2.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1035) Sarcolipin PF05366.6 gi|344210600|ref|YP_004794920.1| - 2.3 7.7 4.2 3.9 6.9 2.9 1.3 1 0 0 1 1 1 0 Sarcolipin ABC2_membrane_2 PF12679.2 gi|344210601|ref|YP_004794921.1| - 9.1e-41 139.5 17.6 1.1e-40 139.3 12.2 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|344210601|ref|YP_004794921.1| - 4.4e-12 45.6 9.7 4.4e-12 45.6 6.8 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|344210601|ref|YP_004794921.1| - 1.6e-06 27.5 3.0 1.6e-06 27.5 2.1 1.8 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|344210601|ref|YP_004794921.1| - 4.2e-06 26.0 8.8 6.6e-06 25.3 6.1 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|344210601|ref|YP_004794921.1| - 5.3e-06 25.7 8.8 5.3e-06 25.7 6.1 1.7 2 0 0 2 2 2 1 ABC-2 type transporter ABC_tran PF00005.22 gi|344210602|ref|YP_004794922.1| - 2.6e-29 102.2 0.0 4.1e-29 101.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344210602|ref|YP_004794922.1| - 2.9e-13 50.4 0.0 2.5e-08 34.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|344210602|ref|YP_004794922.1| - 0.00072 20.0 0.0 0.0016 18.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|344210602|ref|YP_004794922.1| - 0.0015 17.8 0.0 0.36 10.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|344210602|ref|YP_004794922.1| - 0.002 18.5 0.7 0.0037 17.6 0.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|344210602|ref|YP_004794922.1| - 0.0043 16.6 0.0 0.031 13.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344210602|ref|YP_004794922.1| - 0.0092 15.8 0.2 0.044 13.7 0.0 2.2 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|344210602|ref|YP_004794922.1| - 0.0092 15.4 0.0 0.26 10.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain AAA_29 PF13555.1 gi|344210602|ref|YP_004794922.1| - 0.011 15.1 0.1 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|344210602|ref|YP_004794922.1| - 0.023 14.6 0.0 0.49 10.3 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase IstB_IS21 PF01695.12 gi|344210602|ref|YP_004794922.1| - 0.024 14.0 0.0 0.37 10.1 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|344210602|ref|YP_004794922.1| - 0.039 13.1 0.0 0.078 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|344210602|ref|YP_004794922.1| - 0.074 12.7 0.0 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Beta_helix PF13229.1 gi|344210604|ref|YP_004794924.1| - 2.7e-19 69.4 13.2 2.7e-17 62.9 3.4 2.8 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.8 gi|344210604|ref|YP_004794924.1| - 3.7e-09 36.1 3.8 2.5e-06 26.8 0.2 2.8 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Transglut_core PF01841.14 gi|344210605|ref|YP_004794925.1| - 3e-30 104.7 1.2 1.4e-29 102.5 0.0 2.6 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|344210605|ref|YP_004794925.1| - 4.6e-07 29.7 4.5 4.6e-07 29.7 3.1 3.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|344210605|ref|YP_004794925.1| - 0.00051 19.8 0.1 0.0022 17.7 0.0 2.1 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3488 PF11992.3 gi|344210605|ref|YP_004794925.1| - 0.003 16.2 0.2 0.0062 15.2 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3488) YtkA PF13115.1 gi|344210605|ref|YP_004794925.1| - 0.097 13.0 3.1 3.9 7.8 0.0 3.7 3 0 0 3 3 3 0 YtkA-like Flp_Fap PF04964.9 gi|344210606|ref|YP_004794926.1| - 0.0048 16.4 1.2 0.013 15.1 0.8 1.8 1 0 0 1 1 1 1 Flp/Fap pilin component Fanconi_C PF02106.10 gi|344210606|ref|YP_004794926.1| - 0.12 10.8 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 Fanconi anaemia group C protein Sporozoite_P67 PF05642.6 gi|344210606|ref|YP_004794926.1| - 0.18 9.6 0.4 0.18 9.6 0.3 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF58 PF01882.13 gi|344210607|ref|YP_004794927.1| - 1.1e-16 60.7 0.1 3.4e-16 59.1 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|344210607|ref|YP_004794927.1| - 7.4e-12 45.1 0.7 2.9e-11 43.2 0.5 2.1 1 0 0 1 1 1 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|344210607|ref|YP_004794927.1| - 6.9e-08 31.8 0.0 1.2e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|344210607|ref|YP_004794927.1| - 1.3e-06 28.3 1.0 2.9e-06 27.2 0.1 2.1 2 1 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|344210607|ref|YP_004794927.1| - 0.00073 19.5 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 CARDB SHOCT PF09851.4 gi|344210609|ref|YP_004794929.1| - 2.2e-06 26.9 2.0 4.9e-06 25.8 1.4 1.7 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|344210609|ref|YP_004794929.1| - 7.9e-05 22.3 1.9 0.00016 21.3 1.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) MAPEG PF01124.13 gi|344210609|ref|YP_004794929.1| - 0.076 12.6 0.8 0.11 12.0 0.5 1.2 1 0 0 1 1 1 0 MAPEG family GvpG PF05120.7 gi|344210609|ref|YP_004794929.1| - 1.5 8.7 6.4 0.88 9.4 3.0 1.7 1 1 1 2 2 2 0 Gas vesicle protein G PsbJ PF01788.12 gi|344210609|ref|YP_004794929.1| - 4.6 6.8 7.4 3 7.4 1.7 2.1 2 0 0 2 2 2 0 PsbJ Multi_Drug_Res PF00893.14 gi|344210610|ref|YP_004794930.1| - 1.8e-26 92.4 1.3 2.3e-26 92.0 0.9 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|344210610|ref|YP_004794930.1| - 1.6e-06 28.2 5.3 1.8e-06 28.0 3.7 1.1 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|344210610|ref|YP_004794930.1| - 0.013 15.4 4.4 0.018 15.1 2.7 1.4 1 1 0 1 1 1 0 EamA-like transporter family TPT PF03151.11 gi|344210610|ref|YP_004794930.1| - 0.021 14.4 1.8 0.028 14.0 1.3 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF981 PF06168.6 gi|344210610|ref|YP_004794930.1| - 0.17 11.6 5.0 0.33 10.7 3.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DUF4233 PF14017.1 gi|344210610|ref|YP_004794930.1| - 1 9.2 7.8 4.7 7.1 5.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) TrmB PF01978.14 gi|344210611|ref|YP_004794931.1| - 1.9e-19 69.1 0.1 4.6e-19 67.8 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|344210611|ref|YP_004794931.1| - 0.0018 17.8 0.0 0.0051 16.3 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|344210611|ref|YP_004794931.1| - 0.02 14.5 0.5 0.043 13.4 0.0 1.9 2 0 0 2 2 2 0 MarR family SusD PF07980.6 gi|344210611|ref|YP_004794931.1| - 0.03 13.8 0.0 0.042 13.3 0.0 1.1 1 0 0 1 1 1 0 SusD family E2F_TDP PF02319.15 gi|344210611|ref|YP_004794931.1| - 0.056 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.9 gi|344210611|ref|YP_004794931.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|344210611|ref|YP_004794931.1| - 0.11 12.2 0.1 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_CodY PF08222.6 gi|344210611|ref|YP_004794931.1| - 0.15 11.4 0.2 0.41 10.0 0.0 1.8 2 0 0 2 2 2 0 CodY helix-turn-helix domain AAA_3 PF07726.6 gi|344210612|ref|YP_004794932.1| - 2e-65 218.3 0.1 2.9e-65 217.7 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344210612|ref|YP_004794932.1| - 2.5e-14 53.1 0.0 4.5e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|344210612|ref|YP_004794932.1| - 0.00021 21.5 0.0 0.0007 19.7 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|344210612|ref|YP_004794932.1| - 0.00022 20.7 0.0 0.0011 18.4 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|344210612|ref|YP_004794932.1| - 0.0003 19.6 0.0 0.0016 17.3 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family RuvB_N PF05496.7 gi|344210612|ref|YP_004794932.1| - 0.052 12.5 0.0 0.37 9.8 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|344210612|ref|YP_004794932.1| - 0.056 12.5 0.0 2.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF1414 PF07208.6 gi|344210612|ref|YP_004794932.1| - 0.11 12.2 0.0 1.1 9.0 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1414) KaiC PF06745.8 gi|344210612|ref|YP_004794932.1| - 0.15 11.1 0.0 0.28 10.2 0.0 1.3 1 0 0 1 1 1 0 KaiC Cys_Met_Meta_PP PF01053.15 gi|344210613|ref|YP_004794933.1| - 4.4e-134 446.6 0.0 4.9e-134 446.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|344210613|ref|YP_004794933.1| - 1e-10 41.1 0.0 1.5e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|344210613|ref|YP_004794933.1| - 3e-08 33.0 0.6 6.5e-08 31.9 0.4 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|344210613|ref|YP_004794933.1| - 1.3e-07 30.7 0.0 1.9e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|344210613|ref|YP_004794933.1| - 0.022 13.9 0.1 0.052 12.6 0.1 1.8 1 1 0 1 1 1 0 Beta-eliminating lyase Abhydrolase_1 PF00561.15 gi|344210614|ref|YP_004794934.1| - 3.5e-24 85.6 0.2 4.7e-24 85.2 0.2 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|344210614|ref|YP_004794934.1| - 1.7e-18 67.3 7.3 2.6e-18 66.7 5.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344210614|ref|YP_004794934.1| - 0.00015 21.5 0.5 0.0018 18.0 0.4 2.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|344210614|ref|YP_004794934.1| - 0.00059 19.1 0.1 0.61 9.2 0.0 2.5 2 0 0 2 2 2 2 Prolyl oligopeptidase family GRA6 PF05084.8 gi|344210614|ref|YP_004794934.1| - 0.043 13.3 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Granule antigen protein (GRA6) HypA PF01155.14 gi|344210615|ref|YP_004794935.1| - 0.00076 19.1 0.1 0.00088 18.9 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DnaJ_CXXCXGXG PF00684.14 gi|344210615|ref|YP_004794935.1| - 0.071 13.1 0.2 0.095 12.7 0.1 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-ribbon_3 PF13248.1 gi|344210615|ref|YP_004794935.1| - 0.083 12.1 0.7 8.3 5.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-CCHC PF00098.18 gi|344210615|ref|YP_004794935.1| - 3.9 7.5 5.2 2 8.5 0.9 2.1 2 0 0 2 2 2 0 Zinc knuckle ApbA PF02558.11 gi|344210617|ref|YP_004794937.1| - 3.7e-32 110.8 0.0 6.8e-32 110.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ApbA_C PF08546.6 gi|344210617|ref|YP_004794937.1| - 2.1e-31 108.4 0.4 3.4e-31 107.8 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal F420_oxidored PF03807.12 gi|344210617|ref|YP_004794937.1| - 0.003 17.9 0.8 0.0071 16.7 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|344210617|ref|YP_004794937.1| - 0.061 13.3 0.7 0.37 10.8 0.1 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain MR_MLE_C PF13378.1 gi|344210618|ref|YP_004794938.1| - 2.8e-33 114.2 0.0 5.8e-33 113.1 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|344210618|ref|YP_004794938.1| - 1.6e-26 92.6 0.0 3e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|344210618|ref|YP_004794938.1| - 2.9e-16 59.7 0.1 8.3e-16 58.2 0.0 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DUF1485 PF07364.7 gi|344210618|ref|YP_004794938.1| - 0.02 14.1 0.0 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1485) DUF502 PF04367.8 gi|344210619|ref|YP_004794939.1| - 7.9e-19 67.4 0.9 1.3e-18 66.7 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Sigma_reg_N PF13800.1 gi|344210619|ref|YP_004794939.1| - 1.4 9.0 4.8 5.1 7.1 0.2 2.9 3 0 0 3 3 3 0 Sigma factor regulator N-terminal ABC2_membrane_3 PF12698.2 gi|344210619|ref|YP_004794939.1| - 1.5 7.7 8.3 2.3 7.1 5.8 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein Aminotran_4 PF01063.14 gi|344210620|ref|YP_004794940.1| - 1.1e-46 159.1 0.0 1.4e-46 158.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV DUF2583 PF10762.4 gi|344210621|ref|YP_004794941.1| - 0.064 13.3 0.1 0.074 13.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) DHBP_synthase PF00926.14 gi|344210622|ref|YP_004794942.1| - 1.4e-60 203.8 0.1 1.6e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|344210623|ref|YP_004794943.1| - 1.7e-44 150.2 0.0 2.5e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|344210623|ref|YP_004794943.1| - 1.1e-07 31.5 0.8 2.2e-07 30.5 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344210623|ref|YP_004794943.1| - 2.8e-07 29.7 0.1 4.8e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344210623|ref|YP_004794943.1| - 4.7e-06 26.1 0.4 8.3e-06 25.3 0.3 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|344210623|ref|YP_004794943.1| - 1.6e-05 24.4 0.0 2.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|344210623|ref|YP_004794943.1| - 2.1e-05 24.3 0.0 5.8e-05 22.9 0.0 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.1 gi|344210623|ref|YP_004794943.1| - 3.7e-05 23.1 1.1 3.7e-05 23.1 0.7 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|344210623|ref|YP_004794943.1| - 4.2e-05 23.1 0.1 7.2e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|344210623|ref|YP_004794943.1| - 0.00041 19.8 0.1 0.00088 18.7 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|344210623|ref|YP_004794943.1| - 0.001 19.3 0.2 0.0019 18.5 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|344210623|ref|YP_004794943.1| - 0.015 15.3 0.0 0.034 14.1 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|344210623|ref|YP_004794943.1| - 0.016 14.8 0.4 0.028 13.9 0.3 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|344210623|ref|YP_004794943.1| - 0.02 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|344210623|ref|YP_004794943.1| - 0.02 14.9 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_1 PF00126.22 gi|344210623|ref|YP_004794943.1| - 0.036 13.7 0.1 0.066 12.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|344210623|ref|YP_004794943.1| - 0.045 13.4 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|344210623|ref|YP_004794943.1| - 0.059 13.1 0.1 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|344210623|ref|YP_004794943.1| - 0.063 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|344210623|ref|YP_004794943.1| - 0.092 12.1 0.3 0.19 11.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|344210623|ref|YP_004794943.1| - 0.15 11.7 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Wyosine_form PF08608.7 gi|344210625|ref|YP_004794945.1| - 3.6e-19 68.6 0.1 7.2e-19 67.6 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|344210625|ref|YP_004794945.1| - 3.5e-18 66.3 0.4 3.5e-18 66.3 0.3 1.6 2 1 0 2 2 2 1 Radical SAM superfamily HAD_2 PF13419.1 gi|344210625|ref|YP_004794945.1| - 0.0007 19.8 0.2 0.049 13.8 0.0 2.5 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Zn-ribbon_8 PF09723.5 gi|344210627|ref|YP_004794947.1| - 3.9e-08 33.1 1.1 5.4e-08 32.6 0.7 1.2 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|344210627|ref|YP_004794947.1| - 0.00026 20.6 0.3 0.00029 20.4 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|344210627|ref|YP_004794947.1| - 0.00031 20.3 2.3 0.014 15.1 0.1 2.1 2 0 0 2 2 2 1 Nudix N-terminal DZR PF12773.2 gi|344210627|ref|YP_004794947.1| - 0.00083 19.1 0.7 0.00097 18.9 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|344210627|ref|YP_004794947.1| - 0.0026 17.4 3.9 0.32 10.7 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|344210627|ref|YP_004794947.1| - 0.0045 17.2 0.7 0.29 11.5 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type Prok-RING_1 PF14446.1 gi|344210627|ref|YP_004794947.1| - 0.0047 16.6 1.1 0.0063 16.2 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|344210627|ref|YP_004794947.1| - 0.0054 16.1 0.7 0.38 10.3 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|344210627|ref|YP_004794947.1| - 0.01 15.0 3.3 0.054 12.7 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|344210627|ref|YP_004794947.1| - 0.011 15.1 0.6 0.84 9.1 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|344210627|ref|YP_004794947.1| - 0.011 15.7 1.0 1.1 9.3 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 GFA PF04828.9 gi|344210627|ref|YP_004794947.1| - 0.011 15.6 0.9 0.37 10.7 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|344210627|ref|YP_004794947.1| - 0.013 15.0 0.7 2.5 7.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.9 gi|344210627|ref|YP_004794947.1| - 0.013 15.1 4.4 0.3 10.7 0.3 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.1 gi|344210627|ref|YP_004794947.1| - 0.014 15.1 0.4 3.4 7.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|344210627|ref|YP_004794947.1| - 0.016 14.6 4.8 0.27 10.7 1.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain DNA_ligase_ZBD PF03119.11 gi|344210627|ref|YP_004794947.1| - 0.017 14.8 0.6 0.017 14.8 0.4 1.9 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-H2C2_2 PF13465.1 gi|344210627|ref|YP_004794947.1| - 0.02 15.1 0.2 5.4 7.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-trcl PF13451.1 gi|344210627|ref|YP_004794947.1| - 0.025 14.2 3.2 0.91 9.2 0.7 2.3 2 1 0 2 2 2 0 Probable zinc-binding domain SprT-like PF10263.4 gi|344210627|ref|YP_004794947.1| - 0.03 13.9 0.0 0.03 13.9 0.0 1.0 1 0 0 1 1 1 0 SprT-like family Rubredoxin PF00301.15 gi|344210627|ref|YP_004794947.1| - 0.03 14.1 2.3 0.91 9.4 1.6 2.1 1 1 0 1 1 1 0 Rubredoxin Lar_restr_allev PF14354.1 gi|344210627|ref|YP_004794947.1| - 0.043 14.1 3.9 0.55 10.5 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.14 gi|344210627|ref|YP_004794947.1| - 0.052 13.0 0.3 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1610 PF07754.6 gi|344210627|ref|YP_004794947.1| - 0.064 13.3 2.7 2.8 8.1 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PhnA_Zn_Ribbon PF08274.7 gi|344210627|ref|YP_004794947.1| - 0.077 12.8 0.9 9.7 6.0 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-tcix PF14952.1 gi|344210627|ref|YP_004794947.1| - 0.082 12.2 2.6 5.4 6.4 0.4 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|344210627|ref|YP_004794947.1| - 0.11 12.3 0.3 13 5.6 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein Zn_Tnp_IS1595 PF12760.2 gi|344210627|ref|YP_004794947.1| - 0.12 12.2 2.4 0.29 10.9 1.6 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|344210627|ref|YP_004794947.1| - 0.12 12.4 3.0 4 7.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS91 PF14319.1 gi|344210627|ref|YP_004794947.1| - 0.13 11.7 0.2 0.14 11.6 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain RNHCP PF12647.2 gi|344210627|ref|YP_004794947.1| - 0.13 12.0 0.5 0.17 11.6 0.4 1.2 1 0 0 1 1 1 0 RNHCP domain zf-CSL PF05207.8 gi|344210627|ref|YP_004794947.1| - 0.15 11.6 1.4 0.22 11.0 0.9 1.3 1 0 0 1 1 1 0 CSL zinc finger zf-Mss51 PF13824.1 gi|344210627|ref|YP_004794947.1| - 0.16 11.8 3.1 4.2 7.3 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.7 gi|344210627|ref|YP_004794947.1| - 0.17 11.2 5.3 4 6.8 4.0 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-C2H2_6 PF13912.1 gi|344210627|ref|YP_004794947.1| - 0.18 11.7 4.4 2.5 8.1 0.4 2.4 3 0 0 3 3 2 0 C2H2-type zinc finger DUF2072 PF09845.4 gi|344210627|ref|YP_004794947.1| - 0.18 11.7 0.5 0.23 11.3 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DNA_RNApol_7kD PF03604.8 gi|344210627|ref|YP_004794947.1| - 0.18 11.2 2.8 0.48 9.9 1.9 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37ae PF01780.14 gi|344210627|ref|YP_004794947.1| - 0.18 11.6 0.5 0.6 10.0 0.3 1.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|344210627|ref|YP_004794947.1| - 0.19 11.4 3.3 3.3 7.4 0.3 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|344210627|ref|YP_004794947.1| - 0.19 11.3 1.8 11 5.7 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_3 PF14369.1 gi|344210627|ref|YP_004794947.1| - 0.26 11.3 3.2 0.67 10.0 2.2 1.7 1 1 1 2 2 2 0 zinc-finger zf-dskA_traR PF01258.12 gi|344210627|ref|YP_004794947.1| - 0.26 11.0 2.7 2.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger CpXC PF14353.1 gi|344210627|ref|YP_004794947.1| - 0.29 11.0 2.4 8.2 6.4 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Ogr_Delta PF04606.7 gi|344210627|ref|YP_004794947.1| - 0.33 10.6 1.7 2 8.1 0.3 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF35_N PF12172.3 gi|344210627|ref|YP_004794947.1| - 0.34 10.8 3.8 9.7 6.2 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.6 gi|344210627|ref|YP_004794947.1| - 0.38 10.6 2.1 14 5.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF1936 PF09151.5 gi|344210627|ref|YP_004794947.1| - 0.92 9.0 0.1 0.92 9.0 0.1 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1936) Auto_anti-p27 PF06677.7 gi|344210627|ref|YP_004794947.1| - 1.2 8.9 3.3 3.9 7.2 0.2 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CMD PF02627.15 gi|344210628|ref|YP_004794948.1| - 2.5e-11 43.2 0.8 4.5e-11 42.4 0.5 1.5 1 1 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF1440 PF07274.7 gi|344210629|ref|YP_004794949.1| - 0.054 13.4 1.7 0.19 11.7 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1440) DUF2053 PF09767.4 gi|344210629|ref|YP_004794949.1| - 0.079 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2053) TrmB PF01978.14 gi|344210630|ref|YP_004794950.1| - 4.8e-08 32.6 0.0 6.8e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344210630|ref|YP_004794950.1| - 8.6e-07 28.5 0.3 2.1e-05 24.0 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|344210630|ref|YP_004794950.1| - 1e-06 28.3 0.2 2.4e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344210630|ref|YP_004794950.1| - 1.2e-06 28.1 0.0 2.1e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|344210630|ref|YP_004794950.1| - 4e-06 26.3 0.0 9.6e-06 25.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344210630|ref|YP_004794950.1| - 7.5e-05 22.0 0.0 0.00012 21.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|344210630|ref|YP_004794950.1| - 0.00089 18.9 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|344210630|ref|YP_004794950.1| - 0.00095 18.5 0.2 0.002 17.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|344210630|ref|YP_004794950.1| - 0.001 18.3 0.0 0.0019 17.5 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain TFIIE_alpha PF02002.12 gi|344210630|ref|YP_004794950.1| - 0.0015 17.9 0.0 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_29 PF13551.1 gi|344210630|ref|YP_004794950.1| - 0.0024 17.9 0.5 0.012 15.6 0.1 2.1 1 1 1 2 2 2 1 Winged helix-turn helix HTH_28 PF13518.1 gi|344210630|ref|YP_004794950.1| - 0.0073 16.2 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|344210630|ref|YP_004794950.1| - 0.0095 15.7 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|344210630|ref|YP_004794950.1| - 0.03 14.4 0.0 0.056 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|344210630|ref|YP_004794950.1| - 0.069 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain NifU PF01106.12 gi|344210631|ref|YP_004794951.1| - 4.4e-11 42.4 0.0 6e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain DUF46 PF01864.12 gi|344210632|ref|YP_004794952.1| - 9.3e-46 155.8 1.0 1.1e-45 155.6 0.7 1.1 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|344210632|ref|YP_004794952.1| - 1.9e-05 24.4 1.1 1.9e-05 24.4 0.7 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family Grp1_Fun34_YaaH PF01184.14 gi|344210633|ref|YP_004794953.1| - 0.047 12.9 1.0 0.052 12.8 0.7 1.2 1 0 0 1 1 1 0 GPR1/FUN34/yaaH family Porphobil_deam PF01379.15 gi|344210634|ref|YP_004794954.1| - 1.5e-62 210.3 0.4 3.4e-51 173.2 0.2 2.2 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|344210634|ref|YP_004794954.1| - 5.8e-11 42.3 0.1 1.5e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Uds1 PF15456.1 gi|344210634|ref|YP_004794954.1| - 0.03 14.3 0.7 0.1 12.6 0.5 1.9 1 0 0 1 1 1 0 Up-regulated During Septation TP_methylase PF00590.15 gi|344210635|ref|YP_004794955.1| - 1.1e-53 182.0 0.3 1.3e-53 181.8 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF4350 PF14258.1 gi|344210635|ref|YP_004794955.1| - 0.13 12.4 0.2 16 5.7 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) RFamide_26RFa PF11109.3 gi|344210635|ref|YP_004794955.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Orexigenic neuropeptide Qrfp/P518 HEM4 PF02602.10 gi|344210636|ref|YP_004794956.1| - 1.2e-43 149.0 2.3 1.4e-43 148.7 1.6 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD PspA_IM30 PF04012.7 gi|344210637|ref|YP_004794957.1| - 5.6e-29 101.0 24.2 6.6e-29 100.8 16.8 1.0 1 0 0 1 1 1 1 PspA/IM30 family Snf7 PF03357.16 gi|344210637|ref|YP_004794957.1| - 0.0031 16.9 18.5 2.8 7.2 12.8 2.5 1 1 0 1 1 1 1 Snf7 AAA_13 PF13166.1 gi|344210637|ref|YP_004794957.1| - 0.0034 15.9 8.6 0.0039 15.7 6.0 1.1 1 0 0 1 1 1 1 AAA domain Filament PF00038.16 gi|344210637|ref|YP_004794957.1| - 0.004 16.6 23.2 1 8.7 12.1 3.0 1 1 1 2 2 2 2 Intermediate filament protein Phage_GP20 PF06810.6 gi|344210637|ref|YP_004794957.1| - 0.0049 16.3 3.2 0.0049 16.3 2.2 2.8 1 1 2 3 3 3 1 Phage minor structural protein GP20 DUF3166 PF11365.3 gi|344210637|ref|YP_004794957.1| - 0.02 15.3 1.3 0.02 15.3 0.9 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3166) DUF972 PF06156.8 gi|344210637|ref|YP_004794957.1| - 0.023 15.0 13.9 0.28 11.5 0.3 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|344210637|ref|YP_004794957.1| - 0.028 14.0 20.3 0.33 10.5 7.2 2.4 1 1 1 2 2 2 0 IncA protein DUF948 PF06103.6 gi|344210637|ref|YP_004794957.1| - 0.059 13.2 3.5 7.7 6.4 0.4 3.2 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) FTA4 PF13093.1 gi|344210637|ref|YP_004794957.1| - 0.1 11.9 10.6 0.63 9.4 2.0 2.3 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Baculo_PEP_C PF04513.7 gi|344210637|ref|YP_004794957.1| - 0.15 11.9 7.0 8.3 6.2 0.1 3.2 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DivIC PF04977.10 gi|344210637|ref|YP_004794957.1| - 0.19 11.2 23.2 0.21 11.0 1.2 4.4 3 1 1 4 4 4 0 Septum formation initiator DUF3086 PF11285.3 gi|344210637|ref|YP_004794957.1| - 0.2 10.4 7.0 0.18 10.6 3.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3086) NPV_P10 PF05531.7 gi|344210637|ref|YP_004794957.1| - 0.31 11.3 7.2 7.5 6.8 0.1 3.9 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Herpes_UL6 PF01763.11 gi|344210637|ref|YP_004794957.1| - 0.43 8.6 9.7 0.68 8.0 6.7 1.5 1 1 0 1 1 1 0 Herpesvirus UL6 like Not3 PF04065.10 gi|344210637|ref|YP_004794957.1| - 0.87 8.8 12.5 0.75 9.0 3.7 2.3 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Lge1 PF11488.3 gi|344210637|ref|YP_004794957.1| - 0.88 9.8 14.3 2.2 8.5 0.2 3.4 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 Osmo_CC PF08946.5 gi|344210637|ref|YP_004794957.1| - 0.98 9.4 10.1 0.78 9.8 0.1 4.4 3 2 2 5 5 5 0 Osmosensory transporter coiled coil DUF342 PF03961.8 gi|344210637|ref|YP_004794957.1| - 0.99 7.7 10.8 0.72 8.2 3.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF3332 PF11810.3 gi|344210637|ref|YP_004794957.1| - 0.99 9.0 3.5 0.86 9.2 1.3 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3332) DUF4615 PF15393.1 gi|344210637|ref|YP_004794957.1| - 1 9.6 5.5 0.62 10.3 1.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4615) PolyA_pol PF01743.15 gi|344210637|ref|YP_004794957.1| - 1 9.6 14.1 0.08 13.1 2.2 3.1 1 1 2 3 3 3 0 Poly A polymerase head domain WXG100 PF06013.7 gi|344210637|ref|YP_004794957.1| - 1.8 8.5 12.5 9.8 6.2 3.1 3.7 1 1 2 4 4 4 0 Proteins of 100 residues with WXG Snapin_Pallidin PF14712.1 gi|344210637|ref|YP_004794957.1| - 2.8 8.2 10.1 1.8 8.9 2.1 3.4 2 1 1 3 3 3 0 Snapin/Pallidin Spc7 PF08317.6 gi|344210637|ref|YP_004794957.1| - 3.3 6.2 17.7 0.1 11.2 4.7 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein TBPIP PF07106.8 gi|344210637|ref|YP_004794957.1| - 3.6 7.1 13.6 0.68 9.4 0.4 3.1 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Seryl_tRNA_N PF02403.17 gi|344210637|ref|YP_004794957.1| - 6.6 6.8 14.4 0.51 10.3 1.9 3.6 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|344210637|ref|YP_004794957.1| - 7.2 5.5 23.1 0.32 9.9 5.7 2.3 1 1 1 2 2 2 0 Autophagy protein Apg6 Prefoldin_2 PF01920.15 gi|344210637|ref|YP_004794957.1| - 9.3 6.0 17.3 0.81 9.4 0.7 4.3 3 1 0 3 3 3 0 Prefoldin subunit Atg14 PF10186.4 gi|344210637|ref|YP_004794957.1| - 9.4 5.0 14.5 14 4.5 9.7 1.7 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 V_ATPase_I PF01496.14 gi|344210637|ref|YP_004794957.1| - 9.8 3.8 12.9 4.4 5.0 4.4 2.0 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family DHHA1 PF02272.14 gi|344210640|ref|YP_004794960.1| - 3.6e-15 55.4 1.0 7.8e-15 54.3 0.7 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|344210640|ref|YP_004794960.1| - 1.6e-11 44.0 0.1 2.4e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 DHH family HTH_43 PF09904.4 gi|344210641|ref|YP_004794961.1| - 0.035 13.9 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF2189 PF09955.4 gi|344210641|ref|YP_004794961.1| - 0.38 10.6 3.1 0.43 10.5 2.1 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2189) NOSIC PF08060.8 gi|344210642|ref|YP_004794962.1| - 0.044 13.5 0.3 0.64 9.8 0.1 2.4 2 0 0 2 2 2 0 NOSIC (NUC001) domain FliD_C PF07195.7 gi|344210642|ref|YP_004794962.1| - 0.081 12.1 0.3 6.8 5.9 0.0 2.0 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ABC_transp_aux PF09822.4 gi|344210643|ref|YP_004794963.1| - 0.00031 20.3 0.0 0.00043 19.8 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|344210643|ref|YP_004794963.1| - 0.003 17.7 3.1 0.0091 16.1 0.1 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.13 gi|344210644|ref|YP_004794964.1| - 2.5e-19 69.5 3.9 1.9e-16 60.2 2.7 2.4 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|344210644|ref|YP_004794964.1| - 7.8e-05 22.4 0.3 0.0003 20.5 0.1 1.9 2 0 0 2 2 2 1 Clp protease SDH_sah PF01972.11 gi|344210644|ref|YP_004794964.1| - 0.00054 18.8 0.0 0.00077 18.3 0.0 1.1 1 0 0 1 1 1 1 Serine dehydrogenase proteinase Chlor_dismutase PF06778.7 gi|344210645|ref|YP_004794965.1| - 1.5e-51 174.8 0.0 2.7e-51 174.0 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|344210645|ref|YP_004794965.1| - 1e-09 38.2 0.2 1e-09 38.2 0.1 3.1 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase Methyltransf_18 PF12847.2 gi|344210646|ref|YP_004794966.1| - 1.3e-19 70.7 0.2 4.3e-19 69.1 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344210646|ref|YP_004794966.1| - 2e-18 66.6 0.1 3.1e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210646|ref|YP_004794966.1| - 2.1e-18 66.3 0.0 2.7e-18 65.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344210646|ref|YP_004794966.1| - 2.2e-18 66.4 0.0 3.4e-18 65.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344210646|ref|YP_004794966.1| - 1.3e-14 54.4 0.0 2.7e-14 53.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344210646|ref|YP_004794966.1| - 3e-13 49.9 0.1 5.1e-13 49.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344210646|ref|YP_004794966.1| - 2e-11 43.9 0.3 4e-11 42.9 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344210646|ref|YP_004794966.1| - 1.8e-09 37.1 0.0 2.5e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|344210646|ref|YP_004794966.1| - 3.5e-09 36.4 0.0 5.7e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|344210646|ref|YP_004794966.1| - 6.2e-08 32.0 0.0 7.7e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|344210646|ref|YP_004794966.1| - 8.9e-07 28.5 0.0 5e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.1 gi|344210646|ref|YP_004794966.1| - 1.6e-06 27.8 0.0 2.3e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|344210646|ref|YP_004794966.1| - 8.6e-06 24.9 0.0 1.2e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.13 gi|344210646|ref|YP_004794966.1| - 3e-05 23.3 0.3 4.9e-05 22.6 0.2 1.3 1 0 0 1 1 1 1 O-methyltransferase Ubie_methyltran PF01209.13 gi|344210646|ref|YP_004794966.1| - 0.00057 19.0 0.0 0.00082 18.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|344210646|ref|YP_004794966.1| - 0.0011 18.4 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|344210646|ref|YP_004794966.1| - 0.0024 16.6 0.0 0.0055 15.4 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Pox_MCEL PF03291.11 gi|344210646|ref|YP_004794966.1| - 0.0029 16.5 0.0 0.026 13.4 0.0 1.9 1 1 1 2 2 2 1 mRNA capping enzyme NodS PF05401.6 gi|344210646|ref|YP_004794966.1| - 0.006 15.9 0.0 0.0085 15.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|344210646|ref|YP_004794966.1| - 0.0063 15.5 0.0 0.013 14.5 0.0 1.5 2 0 0 2 2 2 1 Putative methyltransferase PrmA PF06325.8 gi|344210646|ref|YP_004794966.1| - 0.012 14.7 0.2 0.015 14.4 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|344210646|ref|YP_004794966.1| - 0.023 14.2 0.0 0.035 13.6 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 URO-D PF01208.12 gi|344210646|ref|YP_004794966.1| - 0.03 13.2 0.0 0.049 12.5 0.0 1.3 1 1 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) CheR PF01739.13 gi|344210646|ref|YP_004794966.1| - 0.04 13.2 0.0 2.2 7.5 0.0 2.5 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain TehB PF03848.9 gi|344210646|ref|YP_004794966.1| - 0.04 13.0 0.0 0.051 12.7 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB FtsJ PF01728.14 gi|344210646|ref|YP_004794966.1| - 0.046 13.7 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase DREV PF05219.7 gi|344210646|ref|YP_004794966.1| - 0.081 11.7 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Cons_hypoth95 PF03602.10 gi|344210646|ref|YP_004794966.1| - 0.11 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 SnoaL_2 PF12680.2 gi|344210646|ref|YP_004794966.1| - 0.17 12.2 2.0 2.7 8.4 0.1 2.8 1 1 2 3 3 3 0 SnoaL-like domain NifU_N PF01592.11 gi|344210647|ref|YP_004794967.1| - 1.1e-28 99.6 0.1 1.3e-28 99.4 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|344210647|ref|YP_004794967.1| - 0.062 12.9 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain DSPc PF00782.15 gi|344210648|ref|YP_004794968.1| - 2.5e-12 46.5 0.0 3.7e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|344210648|ref|YP_004794968.1| - 0.0001 21.7 0.0 0.0001 21.7 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.7 gi|344210648|ref|YP_004794968.1| - 0.0022 17.4 0.0 0.0027 17.1 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.8 gi|344210648|ref|YP_004794968.1| - 0.034 14.0 0.1 0.053 13.3 0.1 1.4 1 0 0 1 1 1 0 Putative phosphatase (DUF442) PTPlike_phytase PF14566.1 gi|344210648|ref|YP_004794968.1| - 0.077 13.0 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Inositol hexakisphosphate Cupin_2 PF07883.6 gi|344210649|ref|YP_004794969.1| - 7.8e-07 28.4 0.0 1.4e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Cupin domain ARD PF03079.9 gi|344210649|ref|YP_004794969.1| - 0.055 13.4 0.0 0.089 12.7 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_6 PF12852.2 gi|344210649|ref|YP_004794969.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Cupin Aminotran_5 PF00266.14 gi|344210650|ref|YP_004794970.1| - 4.2e-146 486.4 0.1 4.7e-146 486.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|344210650|ref|YP_004794970.1| - 6.5e-12 45.1 0.8 1e-11 44.4 0.6 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|344210650|ref|YP_004794970.1| - 1.1e-10 41.2 0.1 1.4e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|344210650|ref|YP_004794970.1| - 4.8e-09 35.6 0.0 1.4e-08 34.1 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|344210650|ref|YP_004794970.1| - 2.1e-05 23.1 0.0 4.8e-05 21.9 0.0 1.5 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain SelA PF03841.8 gi|344210650|ref|YP_004794970.1| - 0.0002 20.2 0.0 0.00035 19.4 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|344210650|ref|YP_004794970.1| - 0.0021 16.4 0.1 0.0039 15.5 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme MYT1 PF08474.6 gi|344210650|ref|YP_004794970.1| - 0.085 12.3 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 Myelin transcription factor 1 UDPG_MGDP_dh_N PF03721.9 gi|344210651|ref|YP_004794971.1| - 5.1e-38 130.3 0.0 7.7e-38 129.7 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|344210651|ref|YP_004794971.1| - 2.7e-18 65.9 0.0 5.3e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|344210651|ref|YP_004794971.1| - 3.6e-16 59.2 0.0 1.1e-15 57.6 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|344210651|ref|YP_004794971.1| - 2.8e-05 23.8 0.1 7.4e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|344210651|ref|YP_004794971.1| - 0.00037 20.3 0.0 0.0011 18.7 0.0 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|344210651|ref|YP_004794971.1| - 0.023 14.6 0.4 0.53 10.2 0.0 3.0 3 0 0 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.13 gi|344210651|ref|YP_004794971.1| - 0.13 11.8 0.5 0.23 11.0 0.3 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|344210652|ref|YP_004794972.1| - 7e-21 74.9 2.1 8.9e-21 74.6 0.3 2.1 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|344210652|ref|YP_004794972.1| - 1.9e-06 27.3 0.6 7.7e-06 25.3 0.3 2.0 1 1 1 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|344210652|ref|YP_004794972.1| - 2.7e-06 26.6 0.4 1.6e-05 24.1 0.1 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|344210652|ref|YP_004794972.1| - 4.5e-06 26.9 3.6 2.2e-05 24.7 0.2 2.6 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|344210652|ref|YP_004794972.1| - 3.7e-05 23.6 0.3 9.4e-05 22.3 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.14 gi|344210652|ref|YP_004794972.1| - 0.00014 22.2 2.3 0.018 15.5 0.1 2.3 2 0 0 2 2 2 2 CoA binding domain GFO_IDH_MocA_C PF02894.12 gi|344210652|ref|YP_004794972.1| - 0.00055 19.7 0.0 0.0024 17.6 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|344210652|ref|YP_004794972.1| - 0.007 16.6 0.4 0.023 14.9 0.1 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|344210652|ref|YP_004794972.1| - 0.024 13.6 1.1 0.039 12.9 0.8 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase DapB_N PF01113.15 gi|344210652|ref|YP_004794972.1| - 0.081 12.8 1.3 0.2 11.5 0.3 2.1 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NAD_Gly3P_dh_N PF01210.18 gi|344210652|ref|YP_004794972.1| - 0.1 12.3 1.3 0.42 10.3 0.9 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DegT_DnrJ_EryC1 PF01041.12 gi|344210653|ref|YP_004794973.1| - 1e-117 393.2 0.6 1.2e-117 393.0 0.4 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|344210653|ref|YP_004794973.1| - 9.7e-13 47.8 0.3 1.5e-12 47.3 0.2 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|344210653|ref|YP_004794973.1| - 0.0027 16.5 0.2 0.0048 15.6 0.1 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Hexapep PF00132.19 gi|344210654|ref|YP_004794974.1| - 9.4e-26 88.1 11.1 2.3e-10 39.5 0.6 5.1 4 1 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344210654|ref|YP_004794974.1| - 7.6e-17 60.5 2.4 1.4e-05 24.5 0.1 4.4 4 0 0 4 4 4 4 Hexapeptide repeat of succinyl-transferase Acetyltransf_6 PF13480.1 gi|344210655|ref|YP_004794975.1| - 4.5e-17 62.3 0.0 1.5e-16 60.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|344210656|ref|YP_004794976.1| - 5.3e-13 49.1 1.3 9.6e-13 48.2 0.9 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF482 PF04339.7 gi|344210656|ref|YP_004794976.1| - 4.7e-08 32.3 0.1 6.4e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF482 FemAB PF02388.11 gi|344210656|ref|YP_004794976.1| - 0.00034 19.4 0.3 0.0028 16.4 0.2 2.2 2 1 1 3 3 3 1 FemAB family DUF1442 PF07279.6 gi|344210656|ref|YP_004794976.1| - 0.034 13.2 0.0 0.063 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1442) Glycos_transf_1 PF00534.15 gi|344210657|ref|YP_004794977.1| - 7.5e-11 41.7 0.0 1.1e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344210657|ref|YP_004794977.1| - 9.3e-09 35.6 0.9 9.3e-09 35.6 0.6 2.1 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|344210657|ref|YP_004794977.1| - 1.4e-08 34.9 0.1 2.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|344210657|ref|YP_004794977.1| - 0.0038 17.0 0.0 0.0069 16.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|344210657|ref|YP_004794977.1| - 0.069 13.4 0.1 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF4224 PF13986.1 gi|344210657|ref|YP_004794977.1| - 0.083 12.4 0.0 1 8.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) Glycos_transf_2 PF00535.21 gi|344210658|ref|YP_004794978.1| - 1.7e-15 57.1 0.0 7.4e-15 55.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 DiS_P_DiS PF06750.8 gi|344210658|ref|YP_004794978.1| - 0.044 13.5 0.1 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain Lig_chan-Glu_bd PF10613.4 gi|344210658|ref|YP_004794978.1| - 0.11 12.4 0.1 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Ligated ion channel L-glutamate- and glycine-binding site Beta_helix PF13229.1 gi|344210660|ref|YP_004794980.1| - 1.2e-07 31.6 1.1 1.2e-07 31.6 0.8 2.3 2 1 0 2 2 2 1 Right handed beta helix region Beta_helix PF13229.1 gi|344210661|ref|YP_004794981.1| - 9.2e-08 31.9 3.8 0.0025 17.5 2.6 2.7 1 1 1 2 2 2 2 Right handed beta helix region Glycos_transf_1 PF00534.15 gi|344210662|ref|YP_004794982.1| - 3e-20 72.3 0.0 4.2e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344210662|ref|YP_004794982.1| - 6.4e-18 65.2 0.0 1.1e-17 64.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344210662|ref|YP_004794982.1| - 1.2e-10 41.4 0.0 2.2e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344210662|ref|YP_004794982.1| - 8.1e-05 22.8 1.9 8.1e-05 22.8 1.3 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344210662|ref|YP_004794982.1| - 0.018 14.7 0.0 0.074 12.7 0.0 1.9 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Polysacc_synt_C PF14667.1 gi|344210663|ref|YP_004794983.1| - 9.5e-20 70.8 13.2 9.5e-20 70.8 9.2 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|344210663|ref|YP_004794983.1| - 3.9e-15 55.2 14.2 5.8e-15 54.6 9.8 1.3 1 1 0 1 1 1 1 MviN-like protein Polysacc_synt PF01943.12 gi|344210663|ref|YP_004794983.1| - 5.5e-09 35.6 6.6 5.5e-09 35.6 4.6 2.4 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|344210663|ref|YP_004794983.1| - 2.9e-07 30.1 17.7 2.9e-07 30.1 12.2 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein DUF4257 PF14074.1 gi|344210663|ref|YP_004794983.1| - 0.0049 16.4 0.1 0.021 14.4 0.1 2.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4257) DUF354 PF04007.7 gi|344210664|ref|YP_004794984.1| - 1e-16 60.7 0.0 1.1e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) DUF1616 PF07760.6 gi|344210665|ref|YP_004794985.1| - 1.6e-08 34.0 0.0 2.1e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) UPF0565 PF10561.4 gi|344210665|ref|YP_004794985.1| - 0.13 11.1 0.1 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0565 GRA6 PF05084.8 gi|344210665|ref|YP_004794985.1| - 4.3 6.8 8.3 2.7 7.4 2.7 2.1 1 1 1 2 2 2 0 Granule antigen protein (GRA6) PMT_2 PF13231.1 gi|344210666|ref|YP_004794986.1| - 0.0045 16.8 14.5 0.0045 16.8 10.0 4.8 4 1 1 5 5 5 3 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF457 PF04307.9 gi|344210667|ref|YP_004794987.1| - 0.0026 17.0 4.8 0.0035 16.7 3.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Cyt_c_ox_IV PF12270.3 gi|344210667|ref|YP_004794987.1| - 3.5 7.3 5.9 2.9 7.6 0.1 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF424 PF04242.8 gi|344210668|ref|YP_004794988.1| - 5.9e-31 106.3 0.0 6.4e-31 106.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_11 PF13414.1 gi|344210669|ref|YP_004794989.1| - 2.7e-23 81.3 18.4 1.9e-12 46.6 2.5 3.1 1 1 1 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|344210669|ref|YP_004794989.1| - 3e-23 80.4 5.4 4.9e-06 25.9 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|344210669|ref|YP_004794989.1| - 8.5e-21 72.1 13.3 1.9e-05 24.2 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|344210669|ref|YP_004794989.1| - 1.7e-16 60.4 18.0 1.4e-09 38.3 0.8 3.2 2 1 1 3 3 3 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|344210669|ref|YP_004794989.1| - 4e-15 55.5 14.3 3.9e-08 33.1 3.0 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|344210669|ref|YP_004794989.1| - 1.3e-13 49.6 1.3 0.0085 15.8 0.0 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|344210669|ref|YP_004794989.1| - 3.6e-13 48.8 19.1 0.0011 19.3 0.1 5.2 1 1 4 5 5 5 5 Tetratricopeptide repeat TPR_17 PF13431.1 gi|344210669|ref|YP_004794989.1| - 6.6e-13 47.7 1.6 0.0047 17.0 0.0 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_7 PF13176.1 gi|344210669|ref|YP_004794989.1| - 1.4e-10 40.1 11.7 0.00094 18.8 0.2 4.9 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_9 PF13371.1 gi|344210669|ref|YP_004794989.1| - 1.2e-08 34.7 7.7 0.0067 16.2 0.1 3.4 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|344210669|ref|YP_004794989.1| - 3.3e-07 30.3 5.3 1.7 9.3 0.0 5.2 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_10 PF13374.1 gi|344210669|ref|YP_004794989.1| - 4.9e-07 29.4 16.1 0.0021 17.9 0.4 4.5 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|344210669|ref|YP_004794989.1| - 1e-06 28.9 12.0 0.0025 18.1 0.5 3.3 1 1 1 3 3 3 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|344210669|ref|YP_004794989.1| - 0.002 18.3 0.4 0.002 18.3 0.3 5.0 6 0 0 6 6 4 2 Tetratricopeptide repeat YfiO PF13525.1 gi|344210669|ref|YP_004794989.1| - 0.023 14.1 0.2 0.039 13.3 0.1 1.5 1 1 0 1 1 1 0 Outer membrane lipoprotein Creatininase PF02633.9 gi|344210669|ref|YP_004794989.1| - 0.023 13.7 0.6 0.035 13.1 0.4 1.2 1 0 0 1 1 1 0 Creatinine amidohydrolase Apc5 PF12862.2 gi|344210669|ref|YP_004794989.1| - 0.046 13.5 1.8 21 5.0 1.0 3.1 2 1 0 2 2 2 0 Anaphase-promoting complex subunit 5 Acetyltransf_11 PF13720.1 gi|344210669|ref|YP_004794989.1| - 0.44 10.8 2.0 0.6 10.3 0.2 2.1 3 0 0 3 3 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TPR_20 PF14561.1 gi|344210669|ref|YP_004794989.1| - 0.48 10.5 10.7 1.5 9.0 0.4 3.0 2 2 1 3 3 3 0 Tetratricopeptide repeat LigT_PEase PF02834.11 gi|344210670|ref|YP_004794990.1| - 3.1e-23 81.5 0.0 4.3e-13 49.0 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|344210670|ref|YP_004794990.1| - 4.6e-18 65.3 0.0 5.9e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|344210670|ref|YP_004794990.1| - 8.7e-09 35.3 0.0 9.8e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|344210670|ref|YP_004794990.1| - 0.037 13.0 0.0 0.047 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein Zip PF02535.17 gi|344210671|ref|YP_004794991.1| - 2e-16 59.9 23.0 2.2e-12 46.6 3.7 3.0 2 1 1 3 3 3 3 ZIP Zinc transporter Ribosomal_L39 PF00832.15 gi|344210673|ref|YP_004794993.1| - 2.7e-21 74.7 7.1 3.3e-21 74.4 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|344210674|ref|YP_004794994.1| - 9.6e-25 86.0 0.6 1.1e-24 85.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|344210675|ref|YP_004794995.1| - 2.9e-65 219.0 0.0 3.3e-65 218.9 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Nudix_N_2 PF14803.1 gi|344210676|ref|YP_004794996.1| - 2.3e-05 23.9 3.0 0.002 17.7 0.3 2.1 2 0 0 2 2 2 2 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|344210676|ref|YP_004794996.1| - 0.00096 18.5 0.2 1 8.8 0.1 2.1 2 0 0 2 2 2 2 A2L zinc ribbon domain DUF1272 PF06906.6 gi|344210676|ref|YP_004794996.1| - 0.0012 18.6 0.9 0.0015 18.3 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) RNA_POL_M_15KD PF02150.11 gi|344210676|ref|YP_004794996.1| - 0.0018 17.9 1.6 0.19 11.4 0.2 2.1 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|344210676|ref|YP_004794996.1| - 0.0022 17.7 1.3 0.0026 17.5 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|344210676|ref|YP_004794996.1| - 0.0034 17.1 0.7 0.14 11.9 0.1 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|344210676|ref|YP_004794996.1| - 0.0095 15.4 1.8 0.012 15.1 0.1 1.9 1 1 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger Ribosomal_S27 PF01599.14 gi|344210676|ref|YP_004794996.1| - 0.015 15.0 0.6 1.7 8.5 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S27a zf-IS66 PF13005.2 gi|344210676|ref|YP_004794996.1| - 0.018 14.9 2.1 0.14 12.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DnaJ_CXXCXGXG PF00684.14 gi|344210676|ref|YP_004794996.1| - 0.029 14.4 0.4 0.032 14.2 0.3 1.1 1 0 0 1 1 1 0 DnaJ central domain Zn_Tnp_IS1595 PF12760.2 gi|344210676|ref|YP_004794996.1| - 0.048 13.4 2.4 1.4 8.8 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|344210676|ref|YP_004794996.1| - 0.062 12.9 0.4 0.066 12.9 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|344210676|ref|YP_004794996.1| - 0.076 12.3 1.6 0.6 9.4 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|344210676|ref|YP_004794996.1| - 0.079 13.0 1.6 0.32 11.0 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2296 PF10058.4 gi|344210676|ref|YP_004794996.1| - 0.15 11.8 1.1 0.57 9.9 0.7 1.8 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-C2H2_3 PF13878.1 gi|344210676|ref|YP_004794996.1| - 0.17 11.4 3.7 0.24 10.9 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO TFIIS_C PF01096.13 gi|344210676|ref|YP_004794996.1| - 0.24 11.0 1.5 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|344210676|ref|YP_004794996.1| - 0.33 10.9 4.5 5.5 7.0 2.8 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.3 gi|344210676|ref|YP_004794996.1| - 0.35 10.8 5.0 1.3 9.0 3.5 1.9 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_3 PF14369.1 gi|344210676|ref|YP_004794996.1| - 0.49 10.4 4.9 8.4 6.4 3.4 2.1 1 1 0 1 1 1 0 zinc-finger Ribosomal_L18ae PF01775.12 gi|344210677|ref|YP_004794997.1| - 2.8e-12 46.6 0.0 3e-12 46.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|344210678|ref|YP_004794998.1| - 1.1e-23 83.1 6.3 1.1e-23 83.1 4.4 1.6 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|344210678|ref|YP_004794998.1| - 1.3e-07 31.3 24.1 0.00017 21.2 8.9 2.6 1 1 1 2 2 2 2 Prefoldin subunit Ax_dynein_light PF10211.4 gi|344210678|ref|YP_004794998.1| - 0.00025 20.9 16.5 0.012 15.4 5.7 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain DUF4618 PF15397.1 gi|344210678|ref|YP_004794998.1| - 0.00033 20.0 17.0 0.0052 16.1 5.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) TBPIP PF07106.8 gi|344210678|ref|YP_004794998.1| - 0.00034 20.2 15.1 0.031 13.8 4.6 2.1 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) APG6 PF04111.7 gi|344210678|ref|YP_004794998.1| - 0.00064 18.8 20.8 0.01 14.9 7.5 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 DivIC PF04977.10 gi|344210678|ref|YP_004794998.1| - 0.0012 18.2 0.2 0.0012 18.2 0.1 3.1 2 1 1 3 3 2 1 Septum formation initiator Phage_GP20 PF06810.6 gi|344210678|ref|YP_004794998.1| - 0.0013 18.2 19.4 0.005 16.3 1.0 2.1 2 0 0 2 2 2 1 Phage minor structural protein GP20 GAS PF13851.1 gi|344210678|ref|YP_004794998.1| - 0.0017 17.5 11.8 0.17 11.0 0.1 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Sipho_Gp157 PF05565.6 gi|344210678|ref|YP_004794998.1| - 0.002 17.7 0.7 0.002 17.7 0.5 2.2 2 0 0 2 2 2 1 Siphovirus Gp157 HR1 PF02185.11 gi|344210678|ref|YP_004794998.1| - 0.0042 16.7 14.8 0.13 11.9 0.2 2.3 2 0 0 2 2 2 1 Hr1 repeat IncA PF04156.9 gi|344210678|ref|YP_004794998.1| - 0.0061 16.1 19.0 0.18 11.4 1.4 2.2 2 0 0 2 2 2 2 IncA protein Tropomyosin_1 PF12718.2 gi|344210678|ref|YP_004794998.1| - 0.0082 16.0 28.0 0.027 14.2 1.6 2.1 2 0 0 2 2 2 1 Tropomyosin like BLOC1_2 PF10046.4 gi|344210678|ref|YP_004794998.1| - 0.0098 16.0 18.0 0.034 14.2 1.0 2.6 2 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.3 gi|344210678|ref|YP_004794998.1| - 0.01 15.7 13.5 0.05 13.5 4.6 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Spc7 PF08317.6 gi|344210678|ref|YP_004794998.1| - 0.01 14.5 16.6 0.16 10.6 4.8 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|344210678|ref|YP_004794998.1| - 0.011 14.9 2.8 0.019 14.1 2.0 1.4 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Filament PF00038.16 gi|344210678|ref|YP_004794998.1| - 0.011 15.2 17.0 0.24 10.8 6.4 2.0 2 0 0 2 2 2 0 Intermediate filament protein AAA_13 PF13166.1 gi|344210678|ref|YP_004794998.1| - 0.012 14.1 13.6 0.06 11.7 1.3 2.0 2 0 0 2 2 2 0 AAA domain Nsp1_C PF05064.8 gi|344210678|ref|YP_004794998.1| - 0.015 14.9 1.6 0.015 14.9 1.1 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Laminin_II PF06009.7 gi|344210678|ref|YP_004794998.1| - 0.016 14.9 8.4 0.66 9.7 1.5 2.2 2 0 0 2 2 2 0 Laminin Domain II NPV_P10 PF05531.7 gi|344210678|ref|YP_004794998.1| - 0.023 14.9 20.0 0.63 10.3 4.5 2.8 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|344210678|ref|YP_004794998.1| - 0.026 14.4 9.5 0.46 10.3 0.3 2.1 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|344210678|ref|YP_004794998.1| - 0.035 14.2 10.9 0.6 10.2 3.1 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF2968 PF11180.3 gi|344210678|ref|YP_004794998.1| - 0.036 13.4 17.9 0.48 9.7 6.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) CENP-F_leu_zip PF10473.4 gi|344210678|ref|YP_004794998.1| - 0.043 13.6 22.2 0.23 11.3 0.6 2.4 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4337 PF14235.1 gi|344210678|ref|YP_004794998.1| - 0.045 13.5 18.6 0.23 11.2 8.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) DUF948 PF06103.6 gi|344210678|ref|YP_004794998.1| - 0.054 13.3 0.8 0.054 13.3 0.6 2.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) YlqD PF11068.3 gi|344210678|ref|YP_004794998.1| - 0.068 13.2 26.3 0.22 11.5 1.3 2.3 2 0 0 2 2 2 0 YlqD protein TMF_DNA_bd PF12329.3 gi|344210678|ref|YP_004794998.1| - 0.068 12.9 20.3 0.039 13.7 5.4 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF3086 PF11285.3 gi|344210678|ref|YP_004794998.1| - 0.07 11.9 10.1 0.88 8.3 4.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF972 PF06156.8 gi|344210678|ref|YP_004794998.1| - 0.081 13.2 17.6 0.65 10.3 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) EzrA PF06160.7 gi|344210678|ref|YP_004794998.1| - 0.082 11.0 16.9 0.12 10.4 1.4 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DivIVA PF05103.8 gi|344210678|ref|YP_004794998.1| - 0.1 12.6 21.2 0.11 12.5 2.7 2.2 2 0 0 2 2 2 0 DivIVA protein TP_methylase PF00590.15 gi|344210678|ref|YP_004794998.1| - 0.11 12.2 0.1 0.11 12.2 0.1 1.8 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3251 PF11622.3 gi|344210678|ref|YP_004794998.1| - 0.13 11.6 8.6 0.34 10.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3251) DUF4446 PF14584.1 gi|344210678|ref|YP_004794998.1| - 0.14 11.9 9.4 1.3 8.8 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Seryl_tRNA_N PF02403.17 gi|344210678|ref|YP_004794998.1| - 0.15 12.0 16.6 0.38 10.7 1.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Fzo_mitofusin PF04799.8 gi|344210678|ref|YP_004794998.1| - 0.16 11.3 9.7 0.61 9.4 0.3 2.2 2 0 0 2 2 2 0 fzo-like conserved region Kinetocho_Slk19 PF12709.2 gi|344210678|ref|YP_004794998.1| - 0.17 11.9 14.7 1.4 9.0 3.2 2.3 2 0 0 2 2 2 0 Central kinetochore-associated bZIP_1 PF00170.16 gi|344210678|ref|YP_004794998.1| - 0.18 11.7 12.6 0.28 11.1 0.4 2.5 2 1 0 2 2 2 0 bZIP transcription factor CorA PF01544.13 gi|344210678|ref|YP_004794998.1| - 0.19 10.7 10.6 0.69 8.8 1.8 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|344210678|ref|YP_004794998.1| - 0.2 11.4 12.5 0.66 9.7 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Flagellar_rod PF05149.7 gi|344210678|ref|YP_004794998.1| - 0.2 10.8 16.6 0.11 11.7 6.1 2.1 2 0 0 2 2 2 0 Paraflagellar rod protein HemX PF04375.9 gi|344210678|ref|YP_004794998.1| - 0.21 10.1 17.1 1.1 7.7 0.6 2.1 2 0 0 2 2 2 0 HemX AAA_27 PF13514.1 gi|344210678|ref|YP_004794998.1| - 0.22 9.1 17.2 0.39 8.3 11.9 1.4 1 1 0 1 1 1 0 AAA domain Prominin PF05478.6 gi|344210678|ref|YP_004794998.1| - 0.23 8.9 5.6 1.1 6.7 1.2 2.0 2 0 0 2 2 2 0 Prominin EMP24_GP25L PF01105.19 gi|344210678|ref|YP_004794998.1| - 0.26 10.9 14.1 0.88 9.2 0.9 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD TMF_TATA_bd PF12325.3 gi|344210678|ref|YP_004794998.1| - 0.27 10.9 24.0 0.59 9.8 1.0 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Spc24 PF08286.6 gi|344210678|ref|YP_004794998.1| - 0.27 10.9 20.5 0.46 10.1 0.2 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF342 PF03961.8 gi|344210678|ref|YP_004794998.1| - 0.27 9.5 14.4 0.86 7.9 4.5 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF342) DUF3186 PF11382.3 gi|344210678|ref|YP_004794998.1| - 0.33 10.0 8.5 0.32 10.0 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) FliD_C PF07195.7 gi|344210678|ref|YP_004794998.1| - 0.35 10.1 17.7 0.47 9.7 7.8 2.2 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus HrpB7 PF09486.5 gi|344210678|ref|YP_004794998.1| - 0.36 10.7 13.9 1.8 8.4 3.4 2.3 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) DUF2317 PF10079.4 gi|344210678|ref|YP_004794998.1| - 0.38 9.2 12.3 0.44 9.0 4.4 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF4140 PF13600.1 gi|344210678|ref|YP_004794998.1| - 0.43 11.0 18.7 1.3 9.5 2.6 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Lzipper-MIP1 PF14389.1 gi|344210678|ref|YP_004794998.1| - 0.45 10.6 15.8 0.33 11.0 3.9 2.5 2 1 1 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 Hemerythrin PF01814.18 gi|344210678|ref|YP_004794998.1| - 0.48 10.5 7.9 1.8 8.7 1.3 2.4 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain CENP-H PF05837.7 gi|344210678|ref|YP_004794998.1| - 0.49 10.5 14.4 4 7.6 0.1 2.2 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Lge1 PF11488.3 gi|344210678|ref|YP_004794998.1| - 0.51 10.5 12.3 1.1e+02 3.1 8.5 2.8 1 1 0 1 1 1 0 Transcriptional regulatory protein LGE1 Atg14 PF10186.4 gi|344210678|ref|YP_004794998.1| - 0.56 9.0 10.6 1.1 8.1 2.6 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|344210678|ref|YP_004794998.1| - 0.58 9.9 11.6 0.45 10.3 0.6 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3450 PF11932.3 gi|344210678|ref|YP_004794998.1| - 0.6 9.3 19.9 1.6 7.9 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) WXG100 PF06013.7 gi|344210678|ref|YP_004794998.1| - 0.87 9.6 18.4 3 7.8 0.8 2.7 2 0 0 2 2 2 0 Proteins of 100 residues with WXG DUF2570 PF10828.3 gi|344210678|ref|YP_004794998.1| - 0.92 9.1 20.5 0.54 9.8 7.8 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2570) DUF4164 PF13747.1 gi|344210678|ref|YP_004794998.1| - 0.97 9.6 12.6 3.4 7.8 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) ALIX_LYPXL_bnd PF13949.1 gi|344210678|ref|YP_004794998.1| - 0.98 8.3 17.4 0.73 8.7 5.6 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV DUF2730 PF10805.3 gi|344210678|ref|YP_004794998.1| - 1.1 9.0 11.3 2.3 7.9 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) FlxA PF14282.1 gi|344210678|ref|YP_004794998.1| - 1.1 9.2 29.5 1.7 8.6 1.1 2.3 2 0 0 2 2 2 0 FlxA-like protein DUF812 PF05667.6 gi|344210678|ref|YP_004794998.1| - 1.1 7.6 22.5 0.11 10.9 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) DUF2353 PF09789.4 gi|344210678|ref|YP_004794998.1| - 1.1 8.3 15.5 5.7 6.0 10.6 1.8 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) FliD_N PF02465.13 gi|344210678|ref|YP_004794998.1| - 1.2 9.5 0.0 1.2 9.5 0.0 2.9 1 1 2 3 3 2 0 Flagellar hook-associated protein 2 N-terminus ACCA PF03255.9 gi|344210678|ref|YP_004794998.1| - 1.2 8.6 9.9 5.4 6.5 0.1 2.2 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF3847 PF12958.2 gi|344210678|ref|YP_004794998.1| - 1.4 8.6 19.0 0.27 10.9 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) NAD_kinase PF01513.16 gi|344210678|ref|YP_004794998.1| - 1.7 7.3 4.8 0.35 9.6 0.6 1.7 1 1 0 2 2 2 0 ATP-NAD kinase bZIP_Maf PF03131.12 gi|344210678|ref|YP_004794998.1| - 1.7 8.9 18.1 2.8 8.3 0.8 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF904 PF06005.7 gi|344210678|ref|YP_004794998.1| - 1.7 8.9 23.0 2.8 8.2 8.9 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF904) DUF722 PF05263.6 gi|344210678|ref|YP_004794998.1| - 1.8 8.7 10.9 1.4 9.0 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF722) Jnk-SapK_ap_N PF09744.4 gi|344210678|ref|YP_004794998.1| - 2 8.3 16.7 1.7 8.6 6.4 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Mod_r PF07200.8 gi|344210678|ref|YP_004794998.1| - 2.2 8.1 19.5 2.7 7.9 8.0 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.6 gi|344210678|ref|YP_004794998.1| - 2.4 8.1 18.6 2 8.3 2.1 3.5 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF2203 PF09969.4 gi|344210678|ref|YP_004794998.1| - 2.6 8.3 11.4 9 6.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) CDC37_N PF03234.9 gi|344210678|ref|YP_004794998.1| - 2.8 8.2 16.6 9 6.5 11.5 1.7 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Bap31 PF05529.7 gi|344210678|ref|YP_004794998.1| - 2.8 7.3 13.6 4.7 6.6 0.5 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like Nup54 PF13874.1 gi|344210678|ref|YP_004794998.1| - 3.1 7.4 24.2 3.5 7.2 2.3 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 PhoU_div PF01865.11 gi|344210678|ref|YP_004794998.1| - 3.2 6.8 16.1 1.7 7.7 2.1 2.4 2 1 0 2 2 2 0 Protein of unknown function DUF47 Val_tRNA-synt_C PF10458.4 gi|344210678|ref|YP_004794998.1| - 3.2 7.8 9.3 5 7.2 0.4 2.6 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm Mis14 PF08641.7 gi|344210678|ref|YP_004794998.1| - 3.4 7.7 18.0 0.18 11.8 5.4 2.2 2 0 0 2 2 2 0 Kinetochore protein Mis14 like Tnp_P_element PF12017.3 gi|344210678|ref|YP_004794998.1| - 3.6 6.7 11.1 0.91 8.7 0.1 2.1 1 1 1 2 2 2 0 Transposase protein TSC22 PF01166.13 gi|344210678|ref|YP_004794998.1| - 3.7 7.5 21.0 1.4 8.9 7.3 2.6 2 1 0 2 2 2 0 TSC-22/dip/bun family DUF641 PF04859.7 gi|344210678|ref|YP_004794998.1| - 4.2 7.1 19.6 0.5 10.1 0.8 2.3 2 1 0 2 2 2 0 Plant protein of unknown function (DUF641) DUF2937 PF11157.3 gi|344210678|ref|YP_004794998.1| - 4.3 6.6 8.8 8.4 5.6 3.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) ORF6C PF10552.4 gi|344210678|ref|YP_004794998.1| - 4.5 7.0 16.2 0.15 11.8 0.7 2.6 2 1 0 2 2 2 0 ORF6C domain AAA_23 PF13476.1 gi|344210678|ref|YP_004794998.1| - 4.6 7.5 15.1 6.6 7.0 3.8 2.1 2 0 0 2 2 2 0 AAA domain DAGK_cat PF00781.19 gi|344210678|ref|YP_004794998.1| - 4.8 6.6 7.2 0.62 9.4 0.9 2.1 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain Hpt PF01627.18 gi|344210678|ref|YP_004794998.1| - 5.1 7.1 14.0 1.9 8.5 0.2 3.0 2 1 0 2 2 2 0 Hpt domain ERM PF00769.14 gi|344210678|ref|YP_004794998.1| - 5.3 6.5 27.2 1.1 8.7 1.4 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Med4 PF10018.4 gi|344210678|ref|YP_004794998.1| - 5.4 6.3 17.7 1.7 8.0 0.9 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Vps51 PF08700.6 gi|344210678|ref|YP_004794998.1| - 5.7 6.8 15.0 0.61 9.9 0.7 3.3 3 1 1 4 4 3 0 Vps51/Vps67 Allexi_40kDa PF05549.6 gi|344210678|ref|YP_004794998.1| - 6.3 6.0 9.6 5.5 6.2 2.3 2.0 1 1 1 2 2 2 0 Allexivirus 40kDa protein Cauli_DNA-bind PF03310.8 gi|344210678|ref|YP_004794998.1| - 8.2 6.2 9.3 4.3 7.1 1.0 2.3 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein DUF724 PF05266.9 gi|344210678|ref|YP_004794998.1| - 9.6 5.7 20.3 5.9 6.4 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) SRP54 PF00448.17 gi|344210679|ref|YP_004794999.1| - 2.2e-68 229.5 0.2 3.1e-68 229.0 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|344210679|ref|YP_004794999.1| - 6.1e-11 42.2 2.5 1.1e-10 41.3 0.4 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|344210679|ref|YP_004794999.1| - 4.1e-06 26.0 0.1 7e-06 25.2 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin APS_kinase PF01583.15 gi|344210679|ref|YP_004794999.1| - 1.3e-05 24.8 0.0 3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase CbiA PF01656.18 gi|344210679|ref|YP_004794999.1| - 6.3e-05 22.4 2.2 8.5e-05 22.0 0.5 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.5 gi|344210679|ref|YP_004794999.1| - 0.00037 19.8 0.0 0.00066 18.9 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|344210679|ref|YP_004794999.1| - 0.00041 20.3 0.4 0.002 18.1 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344210679|ref|YP_004794999.1| - 0.00041 19.9 1.2 0.0013 18.3 0.8 1.8 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|344210679|ref|YP_004794999.1| - 0.0005 19.4 0.1 0.0056 16.0 0.0 2.3 2 0 0 2 2 2 1 Thymidylate kinase AAA_22 PF13401.1 gi|344210679|ref|YP_004794999.1| - 0.00065 19.8 0.2 0.0018 18.3 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344210679|ref|YP_004794999.1| - 0.00082 19.4 6.4 0.006 16.5 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain cobW PF02492.14 gi|344210679|ref|YP_004794999.1| - 0.0015 17.9 2.2 0.002 17.6 0.2 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|344210679|ref|YP_004794999.1| - 0.0018 18.1 0.0 0.02 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|344210679|ref|YP_004794999.1| - 0.0048 16.6 0.1 0.016 14.9 0.1 1.9 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|344210679|ref|YP_004794999.1| - 0.015 14.2 0.3 0.027 13.4 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|344210679|ref|YP_004794999.1| - 0.02 15.7 0.9 0.059 14.2 0.1 2.3 2 1 0 2 2 1 0 AAA domain AAA_29 PF13555.1 gi|344210679|ref|YP_004794999.1| - 0.02 14.4 0.0 0.049 13.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|344210679|ref|YP_004794999.1| - 0.024 14.5 0.1 0.078 12.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|344210679|ref|YP_004794999.1| - 0.026 13.3 0.0 0.045 12.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|344210679|ref|YP_004794999.1| - 0.029 14.1 0.0 0.11 12.3 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_31 PF13614.1 gi|344210679|ref|YP_004794999.1| - 0.043 13.7 0.0 0.079 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|344210679|ref|YP_004794999.1| - 0.044 13.4 0.2 0.087 12.5 0.1 1.4 1 0 0 1 1 1 0 NTPase 6PF2K PF01591.13 gi|344210679|ref|YP_004794999.1| - 0.045 12.8 0.0 0.083 11.9 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase ATP_bind_1 PF03029.12 gi|344210679|ref|YP_004794999.1| - 0.065 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DAP3 PF10236.4 gi|344210679|ref|YP_004794999.1| - 0.088 11.7 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PPK2 PF03976.9 gi|344210679|ref|YP_004794999.1| - 0.089 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_18 PF13238.1 gi|344210679|ref|YP_004794999.1| - 0.093 13.0 1.3 0.23 11.7 0.0 2.3 2 1 1 3 3 3 0 AAA domain Aconitase_C PF00694.14 gi|344210681|ref|YP_004795001.1| - 0.023 14.8 0.5 0.031 14.3 0.4 1.1 1 0 0 1 1 1 0 Aconitase C-terminal domain Aldolase PF01081.14 gi|344210683|ref|YP_004795003.1| - 3e-41 140.7 2.8 3.5e-41 140.5 2.0 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|344210683|ref|YP_004795003.1| - 6.1e-05 22.1 7.1 0.081 11.8 0.1 3.1 1 1 2 3 3 3 2 Dihydroorotate dehydrogenase TIM-br_sig_trns PF09370.5 gi|344210683|ref|YP_004795003.1| - 0.0086 15.1 1.7 0.34 9.9 0.0 2.1 1 1 1 2 2 2 2 TIM-barrel signal transduction protein TMP-TENI PF02581.12 gi|344210683|ref|YP_004795003.1| - 0.04 13.0 3.1 0.51 9.4 0.1 3.0 2 2 2 4 4 4 0 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|344210683|ref|YP_004795003.1| - 0.05 12.7 8.6 0.45 9.5 0.0 2.9 2 1 1 3 3 3 0 Nitronate monooxygenase TrbC_Ftype PF09673.5 gi|344210683|ref|YP_004795003.1| - 0.097 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein PcrB PF01884.12 gi|344210683|ref|YP_004795003.1| - 0.11 11.7 3.1 0.11 11.6 0.2 2.3 2 1 1 3 3 3 0 PcrB family IMPDH PF00478.20 gi|344210683|ref|YP_004795003.1| - 0.29 9.9 4.5 0.43 9.4 0.5 2.6 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|344210683|ref|YP_004795003.1| - 0.36 9.8 2.2 1.5 7.8 0.0 2.7 2 1 0 3 3 3 0 Ribulose-phosphate 3 epimerase family Cupin_2 PF07883.6 gi|344210684|ref|YP_004795004.1| - 6.1e-14 51.2 1.1 8e-14 50.8 0.8 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|344210684|ref|YP_004795004.1| - 3e-05 23.7 0.1 4.6e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|344210684|ref|YP_004795004.1| - 0.0013 18.4 0.0 0.0015 18.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.1 gi|344210684|ref|YP_004795004.1| - 0.033 13.7 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_1 PF00190.17 gi|344210684|ref|YP_004795004.1| - 0.086 12.2 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|344210684|ref|YP_004795004.1| - 0.1 12.0 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) FdtA PF05523.6 gi|344210684|ref|YP_004795004.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 WxcM-like, C-terminal Mem_trans PF03547.13 gi|344210685|ref|YP_004795005.1| - 2.8e-22 78.5 14.0 1.7e-13 49.6 0.2 2.0 1 1 1 2 2 2 2 Membrane transport protein YvrJ PF12841.2 gi|344210685|ref|YP_004795005.1| - 0.096 11.9 0.0 0.27 10.5 0.0 1.8 1 0 0 1 1 1 0 YvrJ protein family SRP54 PF00448.17 gi|344210686|ref|YP_004795006.1| - 1.2e-59 201.0 0.1 1.9e-59 200.4 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|344210686|ref|YP_004795006.1| - 1.4e-30 105.6 5.9 1.4e-30 105.6 4.1 2.9 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|344210686|ref|YP_004795006.1| - 2.6e-14 53.0 0.4 7.6e-14 51.5 0.0 2.1 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|344210686|ref|YP_004795006.1| - 7.9e-05 22.1 0.1 0.00025 20.4 0.1 1.9 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|344210686|ref|YP_004795006.1| - 0.0022 17.4 1.0 0.0022 17.4 0.7 2.3 3 1 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|344210686|ref|YP_004795006.1| - 0.0025 17.3 2.9 0.0044 16.5 2.0 1.6 1 1 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|344210686|ref|YP_004795006.1| - 0.0028 17.3 0.0 0.0067 16.1 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|344210686|ref|YP_004795006.1| - 0.0077 16.3 0.1 0.05 13.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|344210686|ref|YP_004795006.1| - 0.0079 15.2 6.1 0.14 11.1 0.0 3.1 2 1 1 3 3 3 1 Anion-transporting ATPase SMC_N PF02463.14 gi|344210686|ref|YP_004795006.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain cobW PF02492.14 gi|344210686|ref|YP_004795006.1| - 0.016 14.6 0.2 0.28 10.5 0.1 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CARD PF00619.16 gi|344210686|ref|YP_004795006.1| - 0.017 14.9 1.4 0.081 12.7 0.1 2.5 2 0 0 2 2 2 0 Caspase recruitment domain SRPRB PF09439.5 gi|344210686|ref|YP_004795006.1| - 0.058 12.6 0.0 10 5.3 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Zeta_toxin PF06414.7 gi|344210686|ref|YP_004795006.1| - 0.093 11.8 0.1 0.53 9.3 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|344210686|ref|YP_004795006.1| - 0.22 11.8 2.0 0.48 10.7 0.1 2.6 3 1 0 3 3 2 0 AAA domain YppG PF14179.1 gi|344210686|ref|YP_004795006.1| - 0.5 10.9 3.9 0.45 11.1 0.3 2.1 2 0 0 2 2 2 0 YppG-like protein Usp PF00582.21 gi|344210687|ref|YP_004795007.1| - 1.3e-20 74.0 2.6 1.4e-20 73.9 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family TPR_21 PF09976.4 gi|344210687|ref|YP_004795007.1| - 0.088 12.7 0.3 0.1 12.5 0.2 1.1 1 0 0 1 1 1 0 Tetratricopeptide repeat Thioredoxin PF00085.15 gi|344210688|ref|YP_004795008.1| - 4.5e-10 39.1 0.0 7.9e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|344210688|ref|YP_004795008.1| - 0.00043 20.4 0.2 0.013 15.6 0.1 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain GSP_synth PF03738.9 gi|344210688|ref|YP_004795008.1| - 0.0017 18.5 0.0 0.0028 17.8 0.0 1.4 1 0 0 1 1 1 1 Glutathionylspermidine synthase preATP-grasp ABC_tran PF00005.22 gi|344210689|ref|YP_004795009.1| - 1.5e-29 103.0 0.0 2.1e-29 102.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344210689|ref|YP_004795009.1| - 3.6e-09 37.0 0.0 1.7e-07 31.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344210689|ref|YP_004795009.1| - 4e-05 24.0 0.0 4.6e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344210689|ref|YP_004795009.1| - 0.00018 21.3 0.1 0.00097 19.0 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|344210689|ref|YP_004795009.1| - 0.00055 19.2 0.3 0.019 14.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|344210689|ref|YP_004795009.1| - 0.0037 15.7 0.0 0.028 12.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|344210689|ref|YP_004795009.1| - 0.014 14.9 0.1 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|344210689|ref|YP_004795009.1| - 0.06 12.3 0.0 0.11 11.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|344210689|ref|YP_004795009.1| - 0.12 12.5 0.1 2.5 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|344210689|ref|YP_004795009.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|344210690|ref|YP_004795010.1| - 5.3e-28 98.0 0.0 6.8e-28 97.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|344210690|ref|YP_004795010.1| - 2.9e-11 42.7 0.1 5.8e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|344210690|ref|YP_004795010.1| - 1.5e-06 28.4 0.8 0.00015 21.8 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344210690|ref|YP_004795010.1| - 0.0001 21.7 0.0 0.0002 20.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|344210690|ref|YP_004795010.1| - 0.002 17.3 0.0 0.0034 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344210690|ref|YP_004795010.1| - 0.0058 16.6 0.0 0.072 13.0 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|344210690|ref|YP_004795010.1| - 0.0068 17.2 0.0 0.036 14.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|344210690|ref|YP_004795010.1| - 0.01 16.1 0.0 0.11 12.7 0.0 2.1 1 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|344210690|ref|YP_004795010.1| - 0.011 15.7 0.2 0.05 13.5 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|344210690|ref|YP_004795010.1| - 0.012 15.9 0.4 0.017 15.4 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|344210690|ref|YP_004795010.1| - 0.018 15.1 0.0 0.067 13.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|344210690|ref|YP_004795010.1| - 0.024 14.0 0.0 0.031 13.7 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|344210690|ref|YP_004795010.1| - 0.034 13.7 0.0 0.046 13.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|344210690|ref|YP_004795010.1| - 0.054 13.3 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|344210690|ref|YP_004795010.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SMC_N PF02463.14 gi|344210690|ref|YP_004795010.1| - 0.21 10.7 0.8 0.4 9.8 0.6 1.7 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.11 gi|344210691|ref|YP_004795011.1| - 4.3e-34 117.6 37.5 6.8e-34 117.0 26.0 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|344210692|ref|YP_004795012.1| - 4.1e-33 114.4 34.3 4.8e-33 114.2 23.8 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|344210693|ref|YP_004795013.1| - 1.4e-65 221.8 7.7 1.8e-65 221.5 5.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344210693|ref|YP_004795013.1| - 5.5e-26 91.1 0.2 7.3e-26 90.7 0.2 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|344210693|ref|YP_004795013.1| - 3e-09 36.1 1.3 6.4e-09 35.0 0.9 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|344210693|ref|YP_004795013.1| - 0.0004 20.1 0.8 0.0012 18.6 0.6 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peripla_BP_4 PF13407.1 gi|344210693|ref|YP_004795013.1| - 0.003 16.9 1.7 1.7 7.9 0.0 2.5 1 1 1 2 2 2 2 Periplasmic binding protein domain DUF3367 PF11847.3 gi|344210693|ref|YP_004795013.1| - 0.042 11.8 0.2 1.1 7.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3367) PAS_4 PF08448.5 gi|344210694|ref|YP_004795014.1| - 0.084 12.9 2.0 5.5 7.0 0.3 3.2 1 1 1 2 2 2 0 PAS fold MgtE PF01769.11 gi|344210695|ref|YP_004795015.1| - 9.3e-18 64.8 7.2 9.3e-18 64.8 5.0 1.5 2 0 0 2 2 2 1 Divalent cation transporter Claudin_2 PF13903.1 gi|344210695|ref|YP_004795015.1| - 0.6 9.7 5.6 0.17 11.5 1.3 1.9 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction MgtE PF01769.11 gi|344210696|ref|YP_004795016.1| - 2.8e-18 66.4 12.0 4.5e-18 65.8 8.3 1.3 1 0 0 1 1 1 1 Divalent cation transporter DUF1422 PF07226.6 gi|344210696|ref|YP_004795016.1| - 1.9 8.2 7.8 0.12 12.1 1.2 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1422) DUF4118 PF13493.1 gi|344210696|ref|YP_004795016.1| - 5 7.3 18.2 13 6.0 5.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) Gate PF07670.9 gi|344210697|ref|YP_004795017.1| - 2.3e-05 24.2 17.6 7.3e-05 22.6 1.5 3.0 1 1 2 3 3 3 2 Nucleoside recognition Acetyltransf_4 PF13420.1 gi|344210698|ref|YP_004795018.1| - 6e-17 62.0 0.0 9.8e-17 61.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344210698|ref|YP_004795018.1| - 5.9e-11 42.2 0.0 1.1e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344210698|ref|YP_004795018.1| - 7.8e-09 35.6 0.1 2e-08 34.3 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344210698|ref|YP_004795018.1| - 3e-07 30.5 0.0 5.1e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344210698|ref|YP_004795018.1| - 3.9e-05 23.4 0.0 9.7e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|344210698|ref|YP_004795018.1| - 0.00014 21.7 0.0 0.00034 20.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344210698|ref|YP_004795018.1| - 0.00015 21.9 0.0 0.00024 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|344210698|ref|YP_004795018.1| - 0.0023 17.8 0.4 0.015 15.2 0.1 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain HTH_27 PF13463.1 gi|344210698|ref|YP_004795018.1| - 0.024 14.9 0.0 0.062 13.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|344210698|ref|YP_004795018.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain CBS PF00571.23 gi|344210699|ref|YP_004795019.1| - 1.4e-28 98.4 8.2 3.9e-14 52.1 0.4 3.0 3 0 0 3 3 3 2 CBS domain MaoC_dehydratas PF01575.14 gi|344210699|ref|YP_004795019.1| - 3.9e-22 77.9 0.0 7.3e-22 77.0 0.0 1.4 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344210699|ref|YP_004795019.1| - 4.9e-06 26.3 0.0 1e-05 25.3 0.0 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|344210699|ref|YP_004795019.1| - 0.0094 16.3 0.0 0.018 15.4 0.0 1.5 1 1 0 1 1 1 1 Thioesterase-like superfamily LTD PF00932.14 gi|344210700|ref|YP_004795020.1| - 1.5e-22 79.8 6.5 1.5e-22 79.8 4.5 2.0 2 1 0 2 2 2 1 Lamin Tail Domain SNase PF00565.12 gi|344210700|ref|YP_004795020.1| - 6.9e-19 68.1 0.0 1.1e-18 67.4 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Oxidored_molyb PF00174.14 gi|344210701|ref|YP_004795021.1| - 1.6e-30 105.7 0.1 2.4e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF4405 PF14358.1 gi|344210701|ref|YP_004795021.1| - 9.9 6.3 14.9 2.1 8.5 1.4 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) Cyt_c_ox_IV PF12270.3 gi|344210702|ref|YP_004795022.1| - 1.4 8.6 9.7 0.38 10.4 3.1 2.0 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV HAD_2 PF13419.1 gi|344210703|ref|YP_004795023.1| - 2.2e-24 86.6 0.2 2.6e-24 86.4 0.2 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344210703|ref|YP_004795023.1| - 1.1e-07 31.4 0.2 6.1e-07 29.0 0.0 2.1 2 1 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|344210703|ref|YP_004795023.1| - 6.6e-06 26.6 0.2 3.8e-05 24.2 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RNA_binding PF01877.12 gi|344210704|ref|YP_004795024.1| - 1.1e-23 83.5 0.1 2.1e-23 82.6 0.1 1.5 1 1 0 1 1 1 1 RNA binding GPP34 PF05719.6 gi|344210704|ref|YP_004795024.1| - 0.0051 16.8 0.0 0.0054 16.8 0.0 1.2 1 0 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) AAA_18 PF13238.1 gi|344210705|ref|YP_004795025.1| - 4.1e-16 59.4 0.0 5.1e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344210705|ref|YP_004795025.1| - 5.8e-12 46.4 0.0 6.8e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344210705|ref|YP_004795025.1| - 7.6e-08 32.3 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|344210705|ref|YP_004795025.1| - 0.00021 21.1 0.0 0.00025 20.9 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase CoaE PF01121.15 gi|344210705|ref|YP_004795025.1| - 0.015 14.6 0.1 0.056 12.8 0.0 1.9 2 1 0 2 2 2 0 Dephospho-CoA kinase PEP-utilizers PF00391.18 gi|344210705|ref|YP_004795025.1| - 0.14 11.7 1.7 0.55 9.8 1.1 2.0 1 1 0 1 1 1 0 PEP-utilising enzyme, mobile domain polyprenyl_synt PF00348.12 gi|344210706|ref|YP_004795026.1| - 1e-55 188.4 0.0 1.2e-55 188.1 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF3786 PF12654.2 gi|344210706|ref|YP_004795026.1| - 0.062 12.5 0.1 7.4 5.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3786) ETF_alpha PF00766.14 gi|344210707|ref|YP_004795027.1| - 7.2e-37 124.8 0.6 4.2e-36 122.4 0.1 2.3 3 0 0 3 3 3 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|344210707|ref|YP_004795027.1| - 6e-32 110.6 2.0 9.7e-32 109.9 1.4 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|344210708|ref|YP_004795028.1| - 1.4e-35 122.4 5.2 1.4e-35 122.4 3.6 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein domain SBP_bac_8 PF13416.1 gi|344210708|ref|YP_004795028.1| - 0.15 11.7 1.7 0.61 9.7 1.2 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein HTH_24 PF13412.1 gi|344210709|ref|YP_004795029.1| - 0.018 14.3 0.1 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344210709|ref|YP_004795029.1| - 0.019 14.5 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2782 PF11191.3 gi|344210709|ref|YP_004795029.1| - 0.083 12.8 0.4 0.85 9.6 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2782) MGC-24 PF05283.6 gi|344210709|ref|YP_004795029.1| - 3.8 7.2 5.9 20 4.9 0.1 2.4 2 0 0 2 2 2 0 Multi-glycosylated core protein 24 (MGC-24) BiPBP_C PF06832.7 gi|344210710|ref|YP_004795030.1| - 4.6e-05 23.2 0.6 0.00086 19.1 0.1 3.1 4 0 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family SHOCT PF09851.4 gi|344210710|ref|YP_004795030.1| - 0.032 13.7 0.1 0.071 12.5 0.1 1.6 1 0 0 1 1 1 0 Short C-terminal domain DUF2846 PF11008.3 gi|344210710|ref|YP_004795030.1| - 0.073 12.9 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2846) Big_2 PF02368.13 gi|344210710|ref|YP_004795030.1| - 0.21 11.5 8.1 1.9 8.4 3.8 3.1 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 2) DUF4469 PF14734.1 gi|344210710|ref|YP_004795030.1| - 1.1 9.2 6.6 7.3 6.5 0.1 3.7 2 1 2 4 4 4 0 Domain of unknown function (DUF4469) with IG-like fold Methyltransf_11 PF08241.7 gi|344210711|ref|YP_004795031.1| - 3.6e-25 88.2 0.0 6.9e-25 87.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344210711|ref|YP_004795031.1| - 1.8e-18 66.7 0.0 2.5e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210711|ref|YP_004795031.1| - 4.8e-17 61.9 0.0 6e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344210711|ref|YP_004795031.1| - 1.3e-16 60.4 0.0 5.6e-14 51.8 0.0 2.0 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|344210711|ref|YP_004795031.1| - 1.5e-15 57.3 0.0 2.7e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344210711|ref|YP_004795031.1| - 1e-14 54.8 0.0 1.5e-14 54.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344210711|ref|YP_004795031.1| - 1.3e-12 48.2 0.0 2e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344210711|ref|YP_004795031.1| - 3.6e-10 39.8 0.0 1.6e-09 37.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|344210711|ref|YP_004795031.1| - 9.2e-06 24.8 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|344210711|ref|YP_004795031.1| - 2.2e-05 23.3 0.0 3e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|344210711|ref|YP_004795031.1| - 7.8e-05 22.1 0.0 0.00011 21.6 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|344210711|ref|YP_004795031.1| - 9.1e-05 22.0 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|344210711|ref|YP_004795031.1| - 0.00044 19.4 0.0 0.00061 18.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|344210711|ref|YP_004795031.1| - 0.0042 16.5 0.0 0.0051 16.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|344210711|ref|YP_004795031.1| - 0.0051 16.1 0.0 0.011 15.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|344210711|ref|YP_004795031.1| - 0.021 13.1 0.0 0.025 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase V-ATPase_G PF03179.10 gi|344210712|ref|YP_004795032.1| - 1.5e-05 25.2 22.3 3.2e-05 24.1 15.5 1.5 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|344210712|ref|YP_004795032.1| - 3e-05 23.8 29.5 4.9e-05 23.1 16.3 2.0 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF883 PF05957.8 gi|344210712|ref|YP_004795032.1| - 0.0029 17.9 17.7 0.12 12.7 3.4 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) HrpE PF06188.7 gi|344210712|ref|YP_004795032.1| - 0.0049 16.6 16.4 0.0077 16.0 11.4 1.4 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF3552 PF12072.3 gi|344210712|ref|YP_004795032.1| - 0.042 13.0 27.4 0.49 9.5 13.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF948 PF06103.6 gi|344210712|ref|YP_004795032.1| - 0.055 13.3 1.2 0.19 11.6 0.8 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) OmpH PF03938.9 gi|344210712|ref|YP_004795032.1| - 0.062 13.2 17.1 0.082 12.8 11.8 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Sds3 PF08598.6 gi|344210712|ref|YP_004795032.1| - 0.065 12.7 10.7 0.092 12.2 7.4 1.3 1 0 0 1 1 1 0 Sds3-like Muted PF14942.1 gi|344210712|ref|YP_004795032.1| - 0.27 11.1 14.6 0.73 9.6 10.1 1.6 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Remorin_C PF03763.8 gi|344210712|ref|YP_004795032.1| - 0.29 10.6 18.5 0.17 11.4 4.2 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region DivIVA PF05103.8 gi|344210712|ref|YP_004795032.1| - 0.32 11.0 18.9 38 4.3 13.1 2.1 1 1 0 1 1 1 0 DivIVA protein vATP-synt_E PF01991.13 gi|344210712|ref|YP_004795032.1| - 0.47 9.7 26.5 15 4.8 18.3 2.1 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Mitofilin PF09731.4 gi|344210712|ref|YP_004795032.1| - 0.58 8.7 16.0 0.67 8.5 11.1 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Phasin PF05597.6 gi|344210712|ref|YP_004795032.1| - 1.2 8.9 11.8 1.8 8.3 0.5 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DDRGK PF09756.4 gi|344210712|ref|YP_004795032.1| - 3 7.2 19.6 3.7 6.9 13.6 1.1 1 0 0 1 1 1 0 DDRGK domain DUF2422 PF10337.4 gi|344210712|ref|YP_004795032.1| - 3.3 6.3 5.9 3.8 6.2 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) KfrA_N PF11740.3 gi|344210712|ref|YP_004795032.1| - 3.7 8.0 33.9 1.6 9.2 10.9 2.4 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Atg14 PF10186.4 gi|344210712|ref|YP_004795032.1| - 4.8 6.0 9.1 5.9 5.7 6.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Caudo_TAP PF02413.12 gi|344210712|ref|YP_004795032.1| - 4.9 7.3 16.3 36 4.5 6.3 2.3 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein AAA_11 PF13086.1 gi|344210712|ref|YP_004795032.1| - 5 6.6 5.9 6.1 6.3 4.1 1.1 1 0 0 1 1 1 0 AAA domain YtxH PF12732.2 gi|344210712|ref|YP_004795032.1| - 5.6 7.4 12.7 3.1e+02 1.8 8.8 2.5 1 1 0 1 1 1 0 YtxH-like protein GBP_C PF02841.9 gi|344210712|ref|YP_004795032.1| - 6 5.9 15.4 7.3 5.6 10.7 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain LUC7 PF03194.10 gi|344210712|ref|YP_004795032.1| - 8.6 5.7 15.3 9.6 5.6 10.6 1.0 1 0 0 1 1 1 0 LUC7 N_terminus Med8 PF10232.4 gi|344210712|ref|YP_004795032.1| - 8.9 5.7 12.8 11 5.4 8.9 1.3 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 rRNA_processing PF08524.6 gi|344210712|ref|YP_004795032.1| - 9.2 6.0 11.5 12 5.6 8.0 1.3 1 0 0 1 1 1 0 rRNA processing HAUS6_N PF14661.1 gi|344210712|ref|YP_004795032.1| - 9.2 5.5 9.7 12 5.2 6.7 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus ARD PF03079.9 gi|344210712|ref|YP_004795032.1| - 9.9 6.0 8.6 11 5.8 6.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family V_ATPase_I PF01496.14 gi|344210713|ref|YP_004795033.1| - 3.5e-68 230.2 23.1 1.3e-31 109.3 4.1 4.6 3 2 2 5 5 5 4 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|344210713|ref|YP_004795033.1| - 0.0054 17.1 1.5 0.88 10.0 0.3 2.4 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) Prefoldin_2 PF01920.15 gi|344210713|ref|YP_004795033.1| - 0.0083 15.8 1.2 2.6 7.8 0.1 2.3 2 0 0 2 2 2 2 Prefoldin subunit EMP24_GP25L PF01105.19 gi|344210713|ref|YP_004795033.1| - 0.021 14.5 0.3 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Spc24 PF08286.6 gi|344210713|ref|YP_004795033.1| - 0.096 12.3 0.7 13 5.5 0.0 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 TBPIP PF07106.8 gi|344210713|ref|YP_004795033.1| - 0.17 11.4 1.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CENP-Q PF13094.1 gi|344210713|ref|YP_004795033.1| - 0.21 11.6 2.6 0.29 11.1 0.1 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit BBS2_C PF14782.1 gi|344210713|ref|YP_004795033.1| - 0.24 9.9 0.0 0.4 9.2 0.0 1.3 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, C-terminal Baculo_PEP_C PF04513.7 gi|344210713|ref|YP_004795033.1| - 0.41 10.4 1.0 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Med4 PF10018.4 gi|344210713|ref|YP_004795033.1| - 0.47 9.8 1.8 18 4.6 0.2 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 CCDC-167 PF15188.1 gi|344210713|ref|YP_004795033.1| - 0.68 9.9 7.6 2.7 7.9 0.8 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 FlaC_arch PF05377.6 gi|344210713|ref|YP_004795033.1| - 0.7 9.8 6.4 1.5 8.7 0.7 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF2968 PF11180.3 gi|344210713|ref|YP_004795033.1| - 0.77 9.1 1.8 1.8 7.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) APG6 PF04111.7 gi|344210713|ref|YP_004795033.1| - 1.4 7.9 2.8 7.1 5.5 0.5 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 TPD52 PF04201.10 gi|344210713|ref|YP_004795033.1| - 1.9 8.2 7.0 3.9 7.1 1.4 2.2 2 0 0 2 2 2 0 Tumour protein D52 family ATP-synt_C PF00137.16 gi|344210714|ref|YP_004795034.1| - 5.5e-15 55.0 12.0 5.5e-15 55.0 8.3 1.6 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|344210715|ref|YP_004795035.1| - 1.4e-41 141.9 7.4 1.9e-41 141.5 5.2 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|344210715|ref|YP_004795035.1| - 0.0046 16.7 6.3 0.0072 16.0 4.4 1.3 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|344210715|ref|YP_004795035.1| - 0.077 12.8 21.0 0.7 9.7 14.0 2.2 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Pinin_SDK_N PF04697.8 gi|344210715|ref|YP_004795035.1| - 0.34 10.9 0.0 0.34 10.9 0.0 2.6 1 1 2 3 3 3 0 pinin/SDK conserved region DUF59 PF01883.14 gi|344210715|ref|YP_004795035.1| - 0.58 10.1 7.0 17 5.4 0.7 3.6 3 1 1 4 4 4 0 Domain of unknown function DUF59 RRM_3 PF08777.6 gi|344210715|ref|YP_004795035.1| - 1.3 8.9 5.3 3 7.7 3.7 1.6 1 0 0 1 1 1 0 RNA binding motif DivIVA PF05103.8 gi|344210715|ref|YP_004795035.1| - 2.3 8.2 17.2 0.12 12.3 7.0 2.3 2 1 1 3 3 3 0 DivIVA protein OmpH PF03938.9 gi|344210715|ref|YP_004795035.1| - 3 7.7 9.3 4.4 7.2 6.4 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) vATP-synt_AC39 PF01992.11 gi|344210716|ref|YP_004795036.1| - 7.1e-96 321.2 2.0 8.1e-96 321.0 1.4 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|344210716|ref|YP_004795036.1| - 0.0068 16.7 1.8 0.03 14.6 0.2 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF3209) 2-ph_phosp PF04029.9 gi|344210716|ref|YP_004795036.1| - 0.16 10.9 0.0 0.31 9.9 0.0 1.4 1 0 0 1 1 1 0 2-phosphosulpholactate phosphatase ATP-synt_F PF01990.12 gi|344210717|ref|YP_004795037.1| - 3.2e-19 69.1 0.0 3.9e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|344210718|ref|YP_004795038.1| - 6.3e-94 313.4 0.0 8.9e-94 312.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|344210718|ref|YP_004795038.1| - 6.5e-17 62.0 0.3 1.1e-16 61.3 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|344210718|ref|YP_004795038.1| - 3e-12 46.5 3.5 1.2e-11 44.5 2.4 2.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|344210718|ref|YP_004795038.1| - 0.0076 16.2 0.1 2.5 8.2 0.0 2.7 3 0 0 3 3 3 1 Peptidase family M23 QRPTase_N PF02749.11 gi|344210718|ref|YP_004795038.1| - 0.091 12.5 0.2 26 4.7 0.0 2.8 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain AAA_22 PF13401.1 gi|344210718|ref|YP_004795038.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|344210718|ref|YP_004795038.1| - 1.2 8.9 4.8 3.2 7.5 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|344210719|ref|YP_004795039.1| - 5.9e-60 202.4 0.0 7.9e-60 202.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|344210719|ref|YP_004795039.1| - 4.1e-17 62.6 0.5 8.8e-17 61.6 0.3 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|344210719|ref|YP_004795039.1| - 9.8e-15 54.5 0.4 2.7e-14 53.1 0.3 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|344210719|ref|YP_004795039.1| - 5.5e-05 22.9 0.5 0.00016 21.4 0.3 1.9 1 0 0 1 1 1 1 HAS barrel domain Bac_rhodopsin PF01036.13 gi|344210720|ref|YP_004795040.1| - 7e-70 234.8 16.3 8e-70 234.6 11.3 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF3382 PF11862.3 gi|344210720|ref|YP_004795040.1| - 0.079 12.8 3.9 0.16 11.8 1.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3382) SUR7 PF06687.7 gi|344210720|ref|YP_004795040.1| - 3.2 7.2 6.7 30 4.0 4.7 2.4 1 1 1 2 2 2 0 SUR7/PalI family ATP-synt_D PF01813.12 gi|344210721|ref|YP_004795041.1| - 1.9e-61 207.0 11.2 2.2e-61 206.8 7.7 1.1 1 0 0 1 1 1 1 ATP synthase subunit D RICH PF05062.7 gi|344210721|ref|YP_004795041.1| - 1.1 9.4 8.4 2.9 8.0 4.9 2.4 2 1 0 2 2 2 0 RICH domain DUF572 PF04502.8 gi|344210721|ref|YP_004795041.1| - 5.9 6.0 17.8 2.5 7.2 11.0 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF572) DUF1272 PF06906.6 gi|344210722|ref|YP_004795042.1| - 0.16 11.8 0.9 0.34 10.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) eRF1_2 PF03464.10 gi|344210723|ref|YP_004795043.1| - 1.7e-37 128.7 0.0 3.9e-37 127.5 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|344210723|ref|YP_004795043.1| - 7.6e-29 100.2 0.3 2.2e-28 98.7 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|344210723|ref|YP_004795043.1| - 1.4e-24 86.1 0.0 2.2e-24 85.5 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Zn-ribbon_8 PF09723.5 gi|344210723|ref|YP_004795043.1| - 0.16 11.9 0.3 0.42 10.6 0.2 1.6 1 0 0 1 1 1 0 Zinc ribbon domain CbiA PF01656.18 gi|344210724|ref|YP_004795044.1| - 7.9e-32 110.2 1.1 1e-31 109.8 0.8 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344210724|ref|YP_004795044.1| - 3.3e-19 69.3 0.0 5.8e-19 68.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|344210724|ref|YP_004795044.1| - 5.9e-08 32.0 0.1 1.4e-07 30.8 0.1 1.6 1 1 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|344210724|ref|YP_004795044.1| - 4.6e-07 29.2 0.4 0.0016 17.6 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.4 gi|344210724|ref|YP_004795044.1| - 2.7e-06 27.1 0.4 6.8e-06 25.8 0.3 1.7 1 1 0 1 1 1 1 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|344210724|ref|YP_004795044.1| - 1.6e-05 24.1 2.1 4.7e-05 22.5 0.6 2.0 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|344210724|ref|YP_004795044.1| - 1.9e-05 24.3 2.9 0.0001 21.9 0.1 2.7 2 1 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|344210724|ref|YP_004795044.1| - 5.3e-05 22.6 0.3 0.00026 20.4 0.2 1.8 1 1 0 1 1 1 1 YhjQ protein SRP54 PF00448.17 gi|344210724|ref|YP_004795044.1| - 6.9e-05 22.3 1.4 0.0055 16.1 0.2 2.4 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|344210724|ref|YP_004795044.1| - 0.0013 18.4 0.3 0.021 14.5 0.2 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|344210724|ref|YP_004795044.1| - 0.003 16.3 3.7 0.21 10.2 0.3 2.1 2 0 0 2 2 2 2 ArgK protein VirC1 PF07015.6 gi|344210724|ref|YP_004795044.1| - 0.013 14.5 0.9 0.052 12.6 0.2 1.9 2 0 0 2 2 2 0 VirC1 protein DUF1611 PF07755.6 gi|344210724|ref|YP_004795044.1| - 0.025 13.2 0.8 0.13 10.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1611) AAA_25 PF13481.1 gi|344210724|ref|YP_004795044.1| - 0.031 13.6 2.5 0.038 13.4 0.8 1.9 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|344210724|ref|YP_004795044.1| - 0.041 13.5 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.1 gi|344210724|ref|YP_004795044.1| - 0.05 13.1 0.1 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|344210724|ref|YP_004795044.1| - 0.093 13.5 0.1 0.29 11.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|344210724|ref|YP_004795044.1| - 0.094 11.6 0.2 0.22 10.4 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase KTI12 PF08433.5 gi|344210724|ref|YP_004795044.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CTP_synth_N PF06418.9 gi|344210724|ref|YP_004795044.1| - 0.18 10.8 0.6 0.28 10.2 0.4 1.3 1 0 0 1 1 1 0 CTP synthase N-terminus HTH_10 PF04967.7 gi|344210725|ref|YP_004795045.1| - 9.6e-22 76.3 0.3 1.5e-21 75.7 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain DUF3269 PF11673.3 gi|344210725|ref|YP_004795045.1| - 0.018 15.4 0.0 0.035 14.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3269) HTH_AsnC-type PF13404.1 gi|344210725|ref|YP_004795045.1| - 0.026 14.0 0.3 0.081 12.4 0.2 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.22 gi|344210725|ref|YP_004795045.1| - 0.03 14.0 1.0 0.1 12.3 0.7 2.0 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_30 PF13556.1 gi|344210725|ref|YP_004795045.1| - 0.031 13.8 1.1 0.12 12.0 0.1 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_22 PF13309.1 gi|344210725|ref|YP_004795045.1| - 0.058 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|344210725|ref|YP_004795045.1| - 0.074 12.3 0.4 0.16 11.3 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|344210725|ref|YP_004795045.1| - 0.093 12.4 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 MarR family Fibrinogen_BP PF08017.6 gi|344210725|ref|YP_004795045.1| - 0.1 10.8 0.0 0.13 10.4 0.0 1.1 1 0 0 1 1 1 0 Fibrinogen binding protein HTH_24 PF13412.1 gi|344210725|ref|YP_004795045.1| - 0.1 11.9 0.2 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Abhydrolase_6 PF12697.2 gi|344210726|ref|YP_004795046.1| - 4.8e-28 98.5 7.4 5.6e-28 98.3 5.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344210726|ref|YP_004795046.1| - 6.8e-16 58.3 0.0 1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344210726|ref|YP_004795046.1| - 4.2e-06 26.5 0.0 1.1e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_8 PF06259.7 gi|344210726|ref|YP_004795046.1| - 0.00044 19.7 0.0 0.00066 19.2 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase Abhydrolase_4 PF08386.5 gi|344210726|ref|YP_004795046.1| - 0.0026 17.5 0.0 0.0062 16.4 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein Thioesterase PF00975.15 gi|344210726|ref|YP_004795046.1| - 0.023 14.9 0.1 0.032 14.4 0.1 1.4 1 0 0 1 1 1 0 Thioesterase domain DUF2974 PF11187.3 gi|344210726|ref|YP_004795046.1| - 0.039 13.3 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) PAF-AH_p_II PF03403.8 gi|344210726|ref|YP_004795046.1| - 0.1 10.8 0.0 0.14 10.4 0.0 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II tRNA-synt_1d PF00750.14 gi|344210727|ref|YP_004795047.1| - 2.2e-57 194.4 0.0 2.9e-57 194.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|344210727|ref|YP_004795047.1| - 1.3e-35 121.9 0.0 4.2e-35 120.2 0.0 1.9 1 0 0 1 1 1 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|344210727|ref|YP_004795047.1| - 3.2e-10 40.3 0.0 1.1e-09 38.6 0.0 1.9 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|344210727|ref|YP_004795047.1| - 0.0041 15.8 0.0 0.028 13.1 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|344210727|ref|YP_004795047.1| - 0.042 12.9 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Phage_int_SAM_1 PF02899.12 gi|344210727|ref|YP_004795047.1| - 0.075 13.1 0.1 0.21 11.7 0.1 1.8 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Jag_N PF14804.1 gi|344210727|ref|YP_004795047.1| - 3.1 7.9 5.1 1.1 9.2 0.3 2.7 3 0 0 3 3 3 0 Jag N-terminus Peptidase_M50 PF02163.17 gi|344210728|ref|YP_004795048.1| - 8.8e-25 86.7 0.0 1.8e-24 85.7 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|344210728|ref|YP_004795048.1| - 2.7e-22 78.4 2.8 4e-08 33.0 0.3 3.6 2 1 2 4 4 4 3 PDZ domain Tricorn_PDZ PF14685.1 gi|344210728|ref|YP_004795048.1| - 1e-12 47.6 5.6 1.3e-06 28.0 0.7 3.5 3 0 0 3 3 3 3 Tricorn protease PDZ domain PDZ PF00595.19 gi|344210728|ref|YP_004795048.1| - 1.9e-10 40.7 4.6 1.8e-07 31.2 0.5 3.8 3 1 1 4 4 4 2 PDZ domain (Also known as DHR or GLGF) PDZ_1 PF12812.2 gi|344210728|ref|YP_004795048.1| - 0.02 14.8 0.0 7.1 6.6 0.0 3.1 3 0 0 3 3 3 0 PDZ-like domain Usp PF00582.21 gi|344210729|ref|YP_004795049.1| - 4.1e-55 185.8 11.9 1.3e-29 103.1 1.2 2.1 2 0 0 2 2 2 2 Universal stress protein family Endonuclease_7 PF02945.10 gi|344210730|ref|YP_004795050.1| - 0.013 15.1 0.1 0.014 15.1 0.1 1.0 1 0 0 1 1 1 0 Recombination endonuclease VII DUF4428 PF14471.1 gi|344210730|ref|YP_004795050.1| - 0.017 14.8 1.7 0.064 13.0 1.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) AdoMet_dc PF02675.10 gi|344210730|ref|YP_004795050.1| - 0.11 12.4 0.2 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 S-adenosylmethionine decarboxylase DUF3268 PF11672.3 gi|344210730|ref|YP_004795050.1| - 0.14 12.2 0.2 0.16 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) C1_3 PF07649.7 gi|344210730|ref|YP_004795050.1| - 0.6 10.2 4.0 13 5.9 0.1 2.2 2 0 0 2 2 2 0 C1-like domain tRNA-synt_1f PF01921.13 gi|344210731|ref|YP_004795051.1| - 7.2e-103 344.0 0.0 1.1e-102 343.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|344210731|ref|YP_004795051.1| - 2.3e-08 33.1 0.0 1.1e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|344210731|ref|YP_004795051.1| - 0.00093 18.4 0.0 0.019 14.1 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain Baculo_LEF5_C PF11792.3 gi|344210731|ref|YP_004795051.1| - 0.033 13.5 0.6 0.11 11.8 0.0 2.1 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain tRNA-synt_1b PF00579.20 gi|344210731|ref|YP_004795051.1| - 0.18 10.9 0.0 2.9 6.9 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) AA_kinase PF00696.23 gi|344210732|ref|YP_004795052.1| - 8.1e-31 107.4 2.7 1e-30 107.1 1.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family Peptidase_M50 PF02163.17 gi|344210734|ref|YP_004795054.1| - 3.6e-18 65.2 2.8 1e-16 60.4 1.9 2.3 1 1 0 1 1 1 1 Peptidase family M50 AIRS PF00586.19 gi|344210735|ref|YP_004795055.1| - 3e-16 59.4 4.2 3e-16 59.4 2.9 2.2 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|344210735|ref|YP_004795055.1| - 6.3e-09 36.0 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain UPF0104 PF03706.8 gi|344210736|ref|YP_004795056.1| - 9.5e-34 116.9 36.6 1.4e-33 116.4 25.3 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Ribosomal_S19e PF01090.14 gi|344210737|ref|YP_004795057.1| - 1.9e-50 169.9 0.0 2.2e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.16 gi|344210737|ref|YP_004795057.1| - 0.011 15.1 0.0 0.17 11.3 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|344210737|ref|YP_004795057.1| - 0.013 15.1 0.5 0.072 12.7 0.0 2.4 3 0 0 3 3 3 0 MarR family dsDNA_bind PF01984.15 gi|344210738|ref|YP_004795058.1| - 2.3e-28 98.3 13.4 2.7e-28 98.0 9.3 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain NBP1 PF08537.5 gi|344210738|ref|YP_004795058.1| - 0.023 13.9 2.1 0.026 13.7 1.5 1.1 1 0 0 1 1 1 0 Fungal Nap binding protein NBP1 DUF2163 PF09931.4 gi|344210738|ref|YP_004795058.1| - 0.09 12.5 0.3 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2163) Rotamase_2 PF13145.1 gi|344210738|ref|YP_004795058.1| - 0.12 13.0 4.1 0.15 12.6 2.8 1.3 1 0 0 1 1 1 0 PPIC-type PPIASE domain Trypan_glycop PF00913.14 gi|344210738|ref|YP_004795058.1| - 0.2 10.5 4.4 1.6 7.5 3.0 1.9 1 1 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) cwf18 PF08315.7 gi|344210738|ref|YP_004795058.1| - 0.41 11.1 8.7 0.49 10.8 6.1 1.1 1 0 0 1 1 1 0 cwf18 pre-mRNA splicing factor DUF883 PF05957.8 gi|344210738|ref|YP_004795058.1| - 1.2 9.6 7.9 0.7 10.3 2.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) EF-1_beta_acid PF10587.4 gi|344210738|ref|YP_004795058.1| - 1.5 9.0 8.5 6 7.1 1.5 2.5 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region DUF3987 PF13148.1 gi|344210738|ref|YP_004795058.1| - 2.6 6.5 7.0 3 6.2 4.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Peptidase_C58 PF03543.9 gi|344210738|ref|YP_004795058.1| - 4.7 6.6 8.2 5.7 6.3 5.7 1.1 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen Caps_synth_GfcC PF06251.6 gi|344210738|ref|YP_004795058.1| - 7.1 5.7 8.8 18 4.3 6.1 1.6 1 1 0 1 1 1 0 Capsule biosynthesis GfcC APC_CDC26 PF10471.4 gi|344210738|ref|YP_004795058.1| - 7.5 7.3 13.9 4.8e+02 1.5 9.6 2.1 1 1 0 1 1 1 0 Anaphase-promoting complex APC subunit 1 Asn_synthase PF00733.16 gi|344210739|ref|YP_004795059.1| - 0.024 14.1 0.1 0.034 13.6 0.1 1.5 1 1 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|344210739|ref|YP_004795059.1| - 0.055 12.7 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|344210739|ref|YP_004795059.1| - 0.055 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 ATP-binding region KaiC PF06745.8 gi|344210740|ref|YP_004795060.1| - 2.4e-11 43.2 0.0 1.6e-06 27.3 0.0 2.0 1 1 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|344210740|ref|YP_004795060.1| - 0.0015 17.9 0.2 0.064 12.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|344210740|ref|YP_004795060.1| - 0.11 11.2 0.0 0.21 10.3 0.0 1.4 2 0 0 2 2 2 0 PAXNEB protein tRNA-synt_His PF13393.1 gi|344210741|ref|YP_004795061.1| - 4.5e-57 193.4 0.0 5.9e-57 193.0 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|344210741|ref|YP_004795061.1| - 4.7e-23 81.6 0.0 8e-23 80.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|344210741|ref|YP_004795061.1| - 1.2e-11 44.4 0.0 2.5e-11 43.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain NAD_binding_10 PF13460.1 gi|344210741|ref|YP_004795061.1| - 0.062 13.2 1.8 0.37 10.7 0.1 2.7 3 0 0 3 3 3 0 NADH(P)-binding SHOCT PF09851.4 gi|344210742|ref|YP_004795062.1| - 7.3e-10 37.9 0.1 1.1e-09 37.4 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|344210742|ref|YP_004795062.1| - 5.8e-05 22.7 0.4 0.00012 21.7 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) JSRP PF15312.1 gi|344210742|ref|YP_004795062.1| - 0.014 15.3 0.3 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Junctional sarcoplasmic reticulum protein GvpG PF05120.7 gi|344210742|ref|YP_004795062.1| - 0.063 13.0 0.5 0.092 12.5 0.4 1.3 1 0 0 1 1 1 0 Gas vesicle protein G IncA PF04156.9 gi|344210742|ref|YP_004795062.1| - 0.34 10.4 3.7 0.53 9.8 2.6 1.4 1 1 0 1 1 1 0 IncA protein DUF1212 PF06738.7 gi|344210742|ref|YP_004795062.1| - 0.44 9.9 3.0 4.4 6.7 1.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Acetyltransf_1 PF00583.19 gi|344210744|ref|YP_004795064.1| - 7.3e-17 61.1 0.0 1.2e-16 60.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344210744|ref|YP_004795064.1| - 9.7e-09 35.2 0.0 1.4e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344210744|ref|YP_004795064.1| - 2.3e-08 34.3 0.0 2.8e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344210744|ref|YP_004795064.1| - 4.9e-08 33.1 0.0 6e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344210744|ref|YP_004795064.1| - 3.3e-07 30.3 0.0 4.3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344210744|ref|YP_004795064.1| - 3.5e-07 30.1 0.0 4.6e-06 26.5 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344210744|ref|YP_004795064.1| - 4.6e-06 26.2 0.0 7.2e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|344210744|ref|YP_004795064.1| - 0.00057 19.7 0.0 0.00079 19.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344210744|ref|YP_004795064.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase PseudoU_synth_1 PF01416.15 gi|344210745|ref|YP_004795065.1| - 4.9e-23 81.5 0.0 2.5e-10 40.7 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.15 gi|344210746|ref|YP_004795066.1| - 1.2e-68 232.2 1.8 1.2e-68 232.2 1.3 1.7 2 0 0 2 2 2 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|344210746|ref|YP_004795066.1| - 6.7e-22 77.3 0.1 6.7e-22 77.3 0.1 3.3 5 0 0 5 5 5 1 Oligopeptidase F Peptidase_MA_2 PF13485.1 gi|344210746|ref|YP_004795066.1| - 0.0095 15.9 1.5 0.0095 15.9 1.0 2.6 2 1 0 2 2 2 1 Peptidase MA superfamily Reprolysin_3 PF13582.1 gi|344210746|ref|YP_004795066.1| - 0.14 12.7 5.3 0.32 11.5 0.1 2.8 3 0 0 3 3 3 0 Metallo-peptidase family M12B Reprolysin-like AAA PF00004.24 gi|344210747|ref|YP_004795067.1| - 3.2e-43 147.0 1.3 5.3e-43 146.3 0.1 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|344210747|ref|YP_004795067.1| - 5.3e-08 32.9 0.0 1.3e-07 31.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|344210747|ref|YP_004795067.1| - 8.3e-07 28.2 0.4 3e-06 26.4 0.0 2.1 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|344210747|ref|YP_004795067.1| - 2.5e-06 27.6 3.4 0.003 17.5 0.0 3.6 2 1 2 4 4 4 1 AAA ATPase domain AAA_5 PF07728.9 gi|344210747|ref|YP_004795067.1| - 1.1e-05 25.1 2.3 2.7e-05 23.9 0.2 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|344210747|ref|YP_004795067.1| - 1.8e-05 25.5 0.3 7e-05 23.6 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|344210747|ref|YP_004795067.1| - 3e-05 24.1 4.8 0.00065 19.8 0.2 3.2 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|344210747|ref|YP_004795067.1| - 0.0001 21.3 0.0 0.0002 20.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ApoO PF09769.4 gi|344210747|ref|YP_004795067.1| - 0.00069 19.3 0.0 0.27 10.9 0.0 2.2 2 0 0 2 2 2 1 Apolipoprotein O TIP49 PF06068.8 gi|344210747|ref|YP_004795067.1| - 0.00085 18.1 0.0 0.0017 17.1 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_33 PF13671.1 gi|344210747|ref|YP_004795067.1| - 0.0011 18.8 0.7 0.003 17.4 0.1 2.2 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|344210747|ref|YP_004795067.1| - 0.0014 17.7 0.0 0.0032 16.5 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|344210747|ref|YP_004795067.1| - 0.0016 18.1 0.4 0.039 13.6 0.1 2.4 1 1 0 2 2 2 1 NACHT domain AAA_14 PF13173.1 gi|344210747|ref|YP_004795067.1| - 0.0017 18.2 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|344210747|ref|YP_004795067.1| - 0.0021 17.7 0.1 0.0054 16.4 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|344210747|ref|YP_004795067.1| - 0.0024 17.3 0.3 0.041 13.3 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Rootletin PF15035.1 gi|344210747|ref|YP_004795067.1| - 0.0025 17.8 3.6 0.0061 16.5 2.5 1.6 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion AAA_28 PF13521.1 gi|344210747|ref|YP_004795067.1| - 0.0032 17.4 1.8 0.0043 17.0 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|344210747|ref|YP_004795067.1| - 0.006 16.8 0.2 0.031 14.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|344210747|ref|YP_004795067.1| - 0.0063 15.6 0.0 0.013 14.6 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|344210747|ref|YP_004795067.1| - 0.0067 16.0 0.0 0.015 14.8 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|344210747|ref|YP_004795067.1| - 0.0076 15.9 0.6 0.27 10.9 0.1 2.9 2 1 0 2 2 2 1 NTPase CPT PF07931.7 gi|344210747|ref|YP_004795067.1| - 0.012 15.2 0.0 0.028 14.0 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|344210747|ref|YP_004795067.1| - 0.017 15.0 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Torsin IstB_IS21 PF01695.12 gi|344210747|ref|YP_004795067.1| - 0.017 14.5 0.0 0.043 13.2 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein bZIP_1 PF00170.16 gi|344210747|ref|YP_004795067.1| - 0.02 14.8 4.4 0.45 10.5 0.2 2.5 1 1 1 2 2 2 0 bZIP transcription factor KaiC PF06745.8 gi|344210747|ref|YP_004795067.1| - 0.021 13.9 0.5 0.25 10.4 0.0 2.4 1 1 1 2 2 2 0 KaiC NB-ARC PF00931.17 gi|344210747|ref|YP_004795067.1| - 0.029 13.2 0.0 0.063 12.1 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain DUF904 PF06005.7 gi|344210747|ref|YP_004795067.1| - 0.04 14.2 4.4 0.056 13.7 2.1 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF904) DUF2075 PF09848.4 gi|344210747|ref|YP_004795067.1| - 0.055 12.4 0.3 0.1 11.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) GAS PF13851.1 gi|344210747|ref|YP_004795067.1| - 0.055 12.6 3.3 0.062 12.4 1.3 1.7 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding RNA_helicase PF00910.17 gi|344210747|ref|YP_004795067.1| - 0.082 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|344210747|ref|YP_004795067.1| - 0.093 12.7 0.0 0.26 11.3 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|344210747|ref|YP_004795067.1| - 0.1 12.8 0.1 0.44 10.8 0.0 2.1 2 0 0 2 2 2 0 ABC transporter Laminin_II PF06009.7 gi|344210747|ref|YP_004795067.1| - 0.11 12.2 1.0 0.32 10.7 0.6 1.8 2 0 0 2 2 1 0 Laminin Domain II Nsp1_C PF05064.8 gi|344210747|ref|YP_004795067.1| - 0.13 11.8 2.6 0.29 10.8 1.8 1.6 1 0 0 1 1 1 0 Nsp1-like C-terminal region AAA_25 PF13481.1 gi|344210747|ref|YP_004795067.1| - 0.14 11.5 5.9 0.56 9.5 0.2 3.0 2 1 1 3 3 3 0 AAA domain BLOC1_2 PF10046.4 gi|344210747|ref|YP_004795067.1| - 0.25 11.4 2.4 0.25 11.5 0.5 1.9 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2203 PF09969.4 gi|344210747|ref|YP_004795067.1| - 0.26 11.5 1.9 0.47 10.6 0.7 1.9 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) TSC22 PF01166.13 gi|344210747|ref|YP_004795067.1| - 0.29 11.1 7.2 0.24 11.3 0.4 3.3 2 1 1 3 3 2 0 TSC-22/dip/bun family bZIP_2 PF07716.10 gi|344210747|ref|YP_004795067.1| - 0.53 10.1 3.8 0.28 11.0 0.3 2.2 1 1 1 2 2 2 0 Basic region leucine zipper APG6 PF04111.7 gi|344210747|ref|YP_004795067.1| - 0.61 9.0 3.7 1.1 8.2 2.5 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF972 PF06156.8 gi|344210747|ref|YP_004795067.1| - 0.94 9.8 4.1 1.5 9.2 2.0 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|344210747|ref|YP_004795067.1| - 1 8.9 4.1 0.71 9.4 1.6 1.6 2 0 0 2 2 1 0 IncA protein DivIC PF04977.10 gi|344210747|ref|YP_004795067.1| - 1.3 8.5 4.9 0.95 8.9 1.9 1.8 2 0 0 2 2 1 0 Septum formation initiator PQQ_3 PF13570.1 gi|344210748|ref|YP_004795068.1| - 4.6e-51 169.7 36.4 2.4e-11 43.4 0.1 8.2 8 0 0 8 8 8 7 PQQ-like domain PQQ_2 PF13360.1 gi|344210748|ref|YP_004795068.1| - 1.9e-43 148.6 13.6 2e-19 70.0 0.8 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|344210748|ref|YP_004795068.1| - 2.6e-39 130.8 14.2 1e-08 34.2 0.1 7.7 7 0 0 7 7 7 6 PQQ enzyme repeat PvlArgDC PF01862.11 gi|344210749|ref|YP_004795069.1| - 1.6e-24 86.3 0.0 1.9e-24 86.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF4232 PF14016.1 gi|344210749|ref|YP_004795069.1| - 0.072 12.7 0.7 0.11 12.1 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4232) Gram_pos_anchor PF00746.16 gi|344210751|ref|YP_004795071.1| - 1.2 9.0 6.0 6.3 6.7 0.0 2.3 1 1 1 2 2 2 0 Gram positive anchor IncA PF04156.9 gi|344210751|ref|YP_004795071.1| - 5.4 6.5 5.3 5.3 6.5 3.7 1.0 1 0 0 1 1 1 0 IncA protein GTP_EFTU PF00009.22 gi|344210752|ref|YP_004795072.1| - 1e-30 106.5 0.0 1.3e-29 102.9 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|344210752|ref|YP_004795072.1| - 1.3e-23 82.9 0.7 4.2e-23 81.3 0.5 1.9 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|344210752|ref|YP_004795072.1| - 4.9e-14 52.1 4.8 3e-09 36.8 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|344210752|ref|YP_004795072.1| - 6.7e-13 48.0 0.0 2.4e-12 46.3 0.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|344210752|ref|YP_004795072.1| - 1.3e-06 28.3 0.0 4e-06 26.7 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|344210752|ref|YP_004795072.1| - 0.00036 20.1 0.0 0.0011 18.5 0.0 1.8 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Miro PF08477.8 gi|344210752|ref|YP_004795072.1| - 0.00048 20.6 0.0 0.0014 19.0 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|344210752|ref|YP_004795072.1| - 0.0011 18.8 0.3 0.14 11.9 0.1 2.8 2 0 0 2 2 2 1 Dynamin family MobB PF03205.9 gi|344210752|ref|YP_004795072.1| - 0.066 12.9 0.1 0.21 11.2 0.1 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Copper-bind PF00127.15 gi|344210753|ref|YP_004795073.1| - 9e-15 54.7 0.0 1.2e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|344210753|ref|YP_004795073.1| - 0.0054 16.6 0.2 0.0054 16.6 0.1 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|344210753|ref|YP_004795073.1| - 0.0081 16.0 0.0 0.033 14.0 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain Fer2_4 PF13510.1 gi|344210753|ref|YP_004795073.1| - 0.077 12.8 0.0 0.19 11.5 0.0 1.6 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Atrophin-1 PF03154.10 gi|344210753|ref|YP_004795073.1| - 0.42 8.7 7.6 0.48 8.5 5.3 1.0 1 0 0 1 1 1 0 Atrophin-1 family PRC PF05239.11 gi|344210754|ref|YP_004795074.1| - 2.3e-11 43.3 0.0 2.5e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF4411 PF14367.1 gi|344210755|ref|YP_004795075.1| - 0.00093 18.9 0.2 0.76 9.4 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4411) zf-C3HC4_3 PF13920.1 gi|344210755|ref|YP_004795075.1| - 0.0064 16.1 0.3 0.009 15.6 0.2 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Rad50_zn_hook PF04423.9 gi|344210755|ref|YP_004795075.1| - 0.0077 15.6 2.4 0.11 11.9 0.2 3.0 2 1 1 3 3 3 1 Rad50 zinc hook motif DZR PF12773.2 gi|344210755|ref|YP_004795075.1| - 0.0082 15.9 1.0 0.014 15.1 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon PIN PF01850.16 gi|344210755|ref|YP_004795075.1| - 0.012 15.8 2.2 0.18 12.1 1.5 2.1 1 1 0 1 1 1 0 PIN domain UPF0278 PF08745.6 gi|344210755|ref|YP_004795075.1| - 0.018 14.2 0.5 0.045 12.9 0.2 1.6 1 1 1 2 2 2 0 UPF0278 family NOB1_Zn_bind PF08772.6 gi|344210755|ref|YP_004795075.1| - 0.028 14.2 0.4 0.053 13.3 0.3 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2 PF00096.21 gi|344210755|ref|YP_004795075.1| - 0.042 14.1 1.9 5.1 7.6 0.1 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.14 gi|344210755|ref|YP_004795075.1| - 0.068 12.8 1.2 0.17 11.5 0.8 1.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|344210755|ref|YP_004795075.1| - 0.08 12.6 3.0 0.28 10.9 0.2 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Mut7-C PF01927.11 gi|344210755|ref|YP_004795075.1| - 0.081 12.9 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain Zn-ribbon_8 PF09723.5 gi|344210755|ref|YP_004795075.1| - 0.085 12.8 3.9 1.3 8.9 2.7 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344210755|ref|YP_004795075.1| - 0.087 12.6 0.8 5.8 6.8 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|344210755|ref|YP_004795075.1| - 0.38 10.4 7.6 0.15 11.7 2.0 2.2 1 1 1 2 2 2 0 zinc-finger of a C2HC-type RHH_1 PF01402.16 gi|344210756|ref|YP_004795076.1| - 5e-06 26.1 0.1 5.7e-06 25.9 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.10 gi|344210756|ref|YP_004795076.1| - 0.0075 15.9 0.0 0.016 14.8 0.0 1.6 1 1 1 2 2 2 1 Translation initiation factor IF-2, N-terminal region DUF3791 PF12668.2 gi|344210756|ref|YP_004795076.1| - 0.021 14.4 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) RepB-RCR_reg PF10723.4 gi|344210756|ref|YP_004795076.1| - 0.033 13.9 0.0 0.038 13.7 0.0 1.1 1 0 0 1 1 1 0 Replication regulatory protein RepB PqqD PF05402.7 gi|344210756|ref|YP_004795076.1| - 0.082 12.9 0.4 0.093 12.7 0.3 1.2 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) FhuF PF06276.7 gi|344210756|ref|YP_004795076.1| - 0.12 12.3 0.0 0.12 12.3 0.0 1.0 1 0 0 1 1 1 0 Ferric iron reductase FhuF-like transporter DUF3867 PF12983.2 gi|344210756|ref|YP_004795076.1| - 0.14 12.1 0.0 0.14 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) Abi PF02517.11 gi|344210757|ref|YP_004795077.1| - 6.9e-16 58.1 1.5 6.9e-16 58.1 1.0 3.6 2 1 0 2 2 2 1 CAAX protease self-immunity PGI PF00342.14 gi|344210758|ref|YP_004795078.1| - 2.7e-50 171.2 0.0 4.1e-50 170.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase YrhC PF14143.1 gi|344210759|ref|YP_004795079.1| - 3.8 7.5 10.5 1.9 8.4 0.2 3.1 3 0 0 3 3 3 0 YrhC-like protein TatD_DNase PF01026.16 gi|344210760|ref|YP_004795080.1| - 0.083 12.0 0.2 0.13 11.4 0.1 1.2 1 0 0 1 1 1 0 TatD related DNase SecD_SecF PF02355.11 gi|344210762|ref|YP_004795082.1| - 5.4e-28 97.4 12.3 8.2e-28 96.8 8.5 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|344210762|ref|YP_004795082.1| - 7.2e-05 21.7 0.1 0.0002 20.3 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.13 gi|344210762|ref|YP_004795082.1| - 0.47 8.3 12.9 0.65 7.8 8.9 1.1 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.11 gi|344210763|ref|YP_004795083.1| - 3.7e-16 58.8 3.8 7.6e-16 57.8 2.6 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|344210763|ref|YP_004795083.1| - 0.014 14.1 12.7 0.031 12.9 8.8 1.5 1 0 0 1 1 1 0 MMPL family Transcrip_reg PF01709.15 gi|344210763|ref|YP_004795083.1| - 0.033 13.3 0.2 0.052 12.6 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator EamA PF00892.15 gi|344210763|ref|YP_004795083.1| - 2 8.4 13.8 0.37 10.8 2.9 2.5 2 0 0 2 2 2 0 EamA-like transporter family Podoplanin PF05808.6 gi|344210763|ref|YP_004795083.1| - 3.5 7.1 6.9 6.2 6.3 1.3 2.6 2 0 0 2 2 2 0 Podoplanin RNase_HII PF01351.13 gi|344210764|ref|YP_004795084.1| - 1.3e-35 122.9 0.0 1.4e-35 122.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII DUF2746 PF10874.3 gi|344210764|ref|YP_004795084.1| - 2.1 8.5 4.8 0.8 9.9 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) THUMP PF02926.12 gi|344210765|ref|YP_004795085.1| - 7.9e-06 25.8 0.0 1.5e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|344210765|ref|YP_004795085.1| - 0.0017 18.3 2.1 0.0049 16.8 0.6 2.2 2 0 0 2 2 2 1 DnaJ central domain MS_channel PF00924.13 gi|344210766|ref|YP_004795086.1| - 5.2e-47 159.8 0.0 1.2e-46 158.7 0.0 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel BacA PF02673.13 gi|344210767|ref|YP_004795087.1| - 1.7e-48 165.0 13.1 2.1e-48 164.7 9.1 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF4382 PF14321.1 gi|344210768|ref|YP_004795088.1| - 1.2e-22 80.4 0.4 1.6e-22 80.1 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) TAT_signal PF10518.4 gi|344210768|ref|YP_004795088.1| - 0.0026 17.6 1.5 0.005 16.7 1.0 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|344210768|ref|YP_004795088.1| - 0.043 13.0 0.2 0.077 12.1 0.1 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CheF-arch PF04283.7 gi|344210769|ref|YP_004795089.1| - 3.4e-31 108.1 0.0 5.1e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea DUF1785 PF08699.5 gi|344210771|ref|YP_004795091.1| - 0.066 12.5 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1785) Usp PF00582.21 gi|344210772|ref|YP_004795092.1| - 5.6e-41 140.0 1.5 6.4e-41 139.8 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|344210772|ref|YP_004795092.1| - 0.014 15.1 0.2 0.59 9.8 0.2 2.2 1 1 0 1 1 1 0 Electron transfer flavoprotein domain MGS PF02142.17 gi|344210772|ref|YP_004795092.1| - 0.076 12.9 0.0 0.98 9.3 0.0 2.3 1 1 0 2 2 2 0 MGS-like domain DUF3226 PF11536.3 gi|344210772|ref|YP_004795092.1| - 0.082 12.3 0.2 1.3 8.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3226) Dodecin PF07311.7 gi|344210772|ref|YP_004795092.1| - 0.098 12.6 0.1 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Dodecin DXP_reductoisom PF02670.11 gi|344210772|ref|YP_004795092.1| - 0.12 12.9 0.0 0.16 12.4 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase SSF PF00474.12 gi|344210773|ref|YP_004795093.1| - 6.3e-51 173.2 34.4 8.3e-51 172.8 23.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF4212 PF13937.1 gi|344210774|ref|YP_004795094.1| - 4.5e-27 93.8 0.0 5.4e-27 93.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF3311 PF11755.3 gi|344210774|ref|YP_004795094.1| - 0.0083 15.6 0.1 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF485 PF04341.7 gi|344210774|ref|YP_004795094.1| - 0.064 12.9 0.9 0.093 12.4 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 AMP-binding PF00501.23 gi|344210775|ref|YP_004795095.1| - 3.4e-91 305.7 0.0 4.1e-91 305.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344210775|ref|YP_004795095.1| - 6.8e-18 65.3 0.3 1.3e-17 64.4 0.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain KNOX1 PF03790.8 gi|344210775|ref|YP_004795095.1| - 0.19 11.1 0.2 0.35 10.2 0.1 1.4 1 0 0 1 1 1 0 KNOX1 domain HTH_10 PF04967.7 gi|344210776|ref|YP_004795096.1| - 2.8e-21 74.8 0.0 1.2e-20 72.7 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.1 gi|344210776|ref|YP_004795096.1| - 2.9e-08 34.3 1.2 2.9e-08 34.3 0.8 2.3 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|344210776|ref|YP_004795096.1| - 4.1e-07 30.1 0.4 1.1e-06 28.7 0.1 1.9 2 0 0 2 2 2 1 GAF domain Phage_integrase PF00589.17 gi|344210776|ref|YP_004795096.1| - 6.2e-06 25.9 0.0 1.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family HTH_20 PF12840.2 gi|344210776|ref|YP_004795096.1| - 0.001 18.8 0.4 0.0087 15.8 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344210776|ref|YP_004795096.1| - 0.001 18.3 0.1 0.009 15.3 0.0 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|344210776|ref|YP_004795096.1| - 0.0017 18.5 0.7 0.29 11.3 0.0 3.3 2 1 1 3 3 3 1 Winged helix-turn helix GerE PF00196.14 gi|344210776|ref|YP_004795096.1| - 0.0022 17.2 0.0 0.013 14.7 0.0 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|344210776|ref|YP_004795096.1| - 0.0089 15.6 0.1 0.046 13.3 0.0 2.1 2 0 0 2 2 2 1 HTH domain Sigma70_r4_2 PF08281.7 gi|344210776|ref|YP_004795096.1| - 0.017 14.5 0.1 0.23 10.9 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|344210776|ref|YP_004795096.1| - 0.039 13.6 0.1 0.53 9.9 0.0 2.7 2 0 0 2 2 2 0 MarR family HTH_22 PF13309.1 gi|344210776|ref|YP_004795096.1| - 0.059 13.1 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|344210776|ref|YP_004795096.1| - 0.068 12.5 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344210776|ref|YP_004795096.1| - 0.069 12.8 0.3 0.22 11.2 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family AMP-binding PF00501.23 gi|344210777|ref|YP_004795097.1| - 1e-85 287.6 0.3 1.2e-85 287.3 0.2 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344210777|ref|YP_004795097.1| - 9.1e-16 58.5 0.2 2.2e-15 57.3 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain CheF-arch PF04283.7 gi|344210778|ref|YP_004795098.1| - 1.2e-66 224.1 1.0 1.6e-66 223.7 0.7 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea PrpF PF04303.8 gi|344210778|ref|YP_004795098.1| - 0.037 12.7 0.1 0.05 12.3 0.0 1.2 1 0 0 1 1 1 0 PrpF protein NTP_transferase PF00483.18 gi|344210779|ref|YP_004795099.1| - 5e-23 81.6 0.0 6.1e-23 81.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|344210779|ref|YP_004795099.1| - 7.4e-13 47.3 12.3 1.3e-09 37.1 1.8 4.5 3 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344210779|ref|YP_004795099.1| - 4.6e-07 29.2 7.8 5.8e-06 25.7 1.2 3.5 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|344210779|ref|YP_004795099.1| - 1.4e-06 28.4 0.0 2.5e-06 27.6 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain SIS PF01380.17 gi|344210780|ref|YP_004795100.1| - 4.2e-53 178.4 0.7 1.3e-26 92.7 0.0 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|344210780|ref|YP_004795100.1| - 1.1e-25 90.1 0.1 2.3e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|344210780|ref|YP_004795100.1| - 5.8e-22 77.7 0.0 1.1e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|344210780|ref|YP_004795100.1| - 5.8e-21 74.5 0.1 7.9e-16 57.7 0.0 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|344210780|ref|YP_004795100.1| - 0.002 16.8 0.0 0.0033 16.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|344210780|ref|YP_004795100.1| - 0.03 14.0 0.1 0.57 9.8 0.0 2.6 2 1 0 3 3 3 0 SIS domain Bac_transf PF02397.11 gi|344210781|ref|YP_004795101.1| - 9.1e-58 194.4 0.0 1.6e-57 193.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial sugar transferase NTP_transferase PF00483.18 gi|344210782|ref|YP_004795102.1| - 1.2e-42 145.9 0.0 1.3e-42 145.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|344210782|ref|YP_004795102.1| - 6.5e-15 55.5 0.0 7.7e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|344210782|ref|YP_004795102.1| - 1e-05 25.1 0.0 5e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EF-hand_9 PF14658.1 gi|344210782|ref|YP_004795102.1| - 0.053 13.4 0.1 9.9 6.1 0.0 2.6 2 1 0 2 2 2 0 EF-hand domain Glycos_transf_2 PF00535.21 gi|344210782|ref|YP_004795102.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 1 0 1 1 1 0 Glycosyl transferase family 2 UDPG_MGDP_dh_N PF03721.9 gi|344210783|ref|YP_004795103.1| - 2.4e-52 177.0 0.0 1.8e-51 174.1 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|344210783|ref|YP_004795103.1| - 3.1e-33 113.8 0.0 7.3e-33 112.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|344210783|ref|YP_004795103.1| - 1.7e-28 98.8 0.4 7.9e-28 96.7 0.0 2.3 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|344210783|ref|YP_004795103.1| - 1.3e-06 28.2 0.0 5.3e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|344210783|ref|YP_004795103.1| - 1.3e-05 24.9 0.0 3.2e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|344210783|ref|YP_004795103.1| - 0.00035 20.8 0.1 0.0017 18.7 0.1 2.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|344210783|ref|YP_004795103.1| - 0.00072 19.0 0.0 0.0013 18.1 0.0 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|344210783|ref|YP_004795103.1| - 0.0016 18.4 0.1 0.0063 16.5 0.0 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|344210783|ref|YP_004795103.1| - 0.0018 18.2 3.7 0.013 15.5 0.0 3.3 4 0 0 4 4 3 1 TrkA-N domain ThiF PF00899.16 gi|344210783|ref|YP_004795103.1| - 0.002 17.9 0.8 0.0079 16.0 0.1 2.2 2 0 0 2 2 2 1 ThiF family 2-Hacid_dh_C PF02826.14 gi|344210783|ref|YP_004795103.1| - 0.01 14.9 0.0 0.12 11.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|344210783|ref|YP_004795103.1| - 0.024 14.2 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|344210783|ref|YP_004795103.1| - 0.031 13.3 0.1 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.19 gi|344210783|ref|YP_004795103.1| - 0.039 12.8 1.8 0.051 12.4 0.5 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_11 PF14833.1 gi|344210783|ref|YP_004795103.1| - 0.044 13.8 0.4 1.3 9.0 0.0 2.9 3 0 0 3 3 3 0 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Pyr_redox_2 PF07992.9 gi|344210783|ref|YP_004795103.1| - 0.075 12.8 0.1 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|344210783|ref|YP_004795103.1| - 0.11 12.2 0.1 1.1 9.0 0.0 2.6 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|344210783|ref|YP_004795103.1| - 0.15 12.4 1.0 13 6.3 0.0 3.4 4 0 0 4 4 3 0 NADP oxidoreductase coenzyme F420-dependent DUF43 PF01861.11 gi|344210783|ref|YP_004795103.1| - 0.48 9.3 2.2 0.6 9.0 0.0 2.2 3 0 0 3 3 3 0 Protein of unknown function DUF43 AdoHcyase_NAD PF00670.16 gi|344210783|ref|YP_004795103.1| - 1.4 8.6 5.1 15 5.4 0.0 3.1 4 0 0 4 4 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF457 PF04307.9 gi|344210784|ref|YP_004795104.1| - 3.4e-11 42.7 8.7 4.1e-11 42.4 6.0 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4131 PF13567.1 gi|344210785|ref|YP_004795105.1| - 0.00012 21.5 1.1 0.11 11.9 0.1 2.8 2 1 0 2 2 2 2 Domain of unknown function (DUF4131) tRNA_anti-codon PF01336.20 gi|344210785|ref|YP_004795105.1| - 0.022 14.6 0.3 1 9.2 0.3 2.2 1 1 1 2 2 2 0 OB-fold nucleic acid binding domain tRNA_anti-like PF12869.2 gi|344210785|ref|YP_004795105.1| - 0.16 11.4 1.5 0.62 9.5 1.0 1.9 1 1 0 1 1 1 0 tRNA_anti-like STT3 PF02516.9 gi|344210786|ref|YP_004795106.1| - 3.3e-10 39.5 19.8 5.2e-10 38.9 13.2 1.5 1 1 1 2 2 2 1 Oligosaccharyl transferase STT3 subunit fn3_3 PF14686.1 gi|344210786|ref|YP_004795106.1| - 0.0053 16.8 0.2 0.017 15.2 0.1 1.8 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II CarboxypepD_reg PF13620.1 gi|344210786|ref|YP_004795106.1| - 0.009 16.0 7.0 0.023 14.7 4.8 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|344210786|ref|YP_004795106.1| - 0.042 13.8 0.3 0.082 12.8 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|344210786|ref|YP_004795106.1| - 0.13 12.0 4.0 0.26 11.0 2.8 1.5 1 0 0 1 1 1 0 Cna protein B-type domain Epimerase PF01370.16 gi|344210787|ref|YP_004795107.1| - 9.5e-40 136.4 0.0 1.3e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|344210787|ref|YP_004795107.1| - 5.5e-24 84.5 0.0 7.3e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|344210787|ref|YP_004795107.1| - 4e-22 78.2 0.0 5.4e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|344210787|ref|YP_004795107.1| - 1.9e-13 50.0 0.0 1.5e-12 46.9 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|344210787|ref|YP_004795107.1| - 1.1e-11 44.2 0.0 1.3e-08 34.0 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|344210787|ref|YP_004795107.1| - 3.5e-09 36.9 1.5 8e-09 35.7 0.1 2.2 2 1 0 2 2 2 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|344210787|ref|YP_004795107.1| - 0.00013 21.0 0.1 0.00024 20.2 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase DapB_N PF01113.15 gi|344210787|ref|YP_004795107.1| - 0.0014 18.4 0.1 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Semialdhyde_dh PF01118.19 gi|344210787|ref|YP_004795107.1| - 0.0019 18.4 0.0 0.0052 17.0 0.0 1.8 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.8 gi|344210787|ref|YP_004795107.1| - 0.0037 16.5 0.2 0.05 12.8 0.1 2.4 2 1 0 2 2 2 1 NmrA-like family Ldh_1_N PF00056.18 gi|344210787|ref|YP_004795107.1| - 0.014 15.2 0.1 0.028 14.2 0.0 1.5 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain adh_short PF00106.20 gi|344210787|ref|YP_004795107.1| - 0.091 12.6 2.5 0.58 10.0 1.7 2.2 1 1 0 1 1 1 0 short chain dehydrogenase DUF3821 PF12863.2 gi|344210787|ref|YP_004795107.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) Epimerase PF01370.16 gi|344210788|ref|YP_004795108.1| - 1.4e-47 162.0 0.0 1.7e-47 161.8 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344210788|ref|YP_004795108.1| - 7.9e-27 93.6 0.0 1.4e-26 92.8 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|344210788|ref|YP_004795108.1| - 2.6e-16 59.3 0.0 3.1e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|344210788|ref|YP_004795108.1| - 4.7e-15 56.0 0.0 6.7e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|344210788|ref|YP_004795108.1| - 1.1e-12 47.4 0.0 3.4e-12 45.8 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|344210788|ref|YP_004795108.1| - 3.1e-11 42.6 0.0 6.2e-09 35.1 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|344210788|ref|YP_004795108.1| - 5.3e-06 26.4 0.2 1e-05 25.5 0.2 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Saccharop_dh PF03435.13 gi|344210788|ref|YP_004795108.1| - 0.0002 20.4 0.0 0.0003 19.8 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|344210788|ref|YP_004795108.1| - 0.001 18.8 0.0 0.0016 18.2 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.8 gi|344210788|ref|YP_004795108.1| - 0.0017 17.6 0.0 0.14 11.4 0.0 2.3 2 1 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|344210788|ref|YP_004795108.1| - 0.013 15.1 0.1 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 KR domain Semialdhyde_dh PF01118.19 gi|344210788|ref|YP_004795108.1| - 0.022 15.0 0.0 0.053 13.8 0.0 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|344210789|ref|YP_004795109.1| - 4.2e-21 75.4 0.0 9.6e-21 74.2 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|344210789|ref|YP_004795109.1| - 9.6e-05 22.3 0.1 0.00019 21.3 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|344210789|ref|YP_004795109.1| - 0.00038 19.4 0.0 0.05 12.4 0.1 3.2 3 1 0 3 3 3 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|344210789|ref|YP_004795109.1| - 0.00043 19.2 0.0 0.014 14.3 0.0 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|344210789|ref|YP_004795109.1| - 0.011 15.4 0.0 0.015 14.9 0.0 1.2 1 0 0 1 1 1 0 KR domain 3Beta_HSD PF01073.14 gi|344210789|ref|YP_004795109.1| - 0.025 13.2 0.0 0.073 11.7 0.0 1.9 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family NUDIX PF00293.23 gi|344210790|ref|YP_004795110.1| - 1.7e-09 37.4 0.1 2e-09 37.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Methyltrn_RNA_2 PF04013.7 gi|344210792|ref|YP_004795112.1| - 1.9e-63 213.6 0.0 2.1e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase NPP1 PF05630.6 gi|344210793|ref|YP_004795113.1| - 0.02 14.5 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 Necrosis inducing protein (NPP1) EzrA PF06160.7 gi|344210793|ref|YP_004795113.1| - 0.052 11.7 0.2 0.075 11.1 0.2 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA NUDIX PF00293.23 gi|344210794|ref|YP_004795114.1| - 1e-14 54.3 0.0 1.3e-14 53.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_30 PF13604.1 gi|344210794|ref|YP_004795114.1| - 0.043 13.3 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF3924 PF13062.1 gi|344210795|ref|YP_004795115.1| - 0.004 17.0 0.0 0.0049 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3924) RHH_1 PF01402.16 gi|344210795|ref|YP_004795115.1| - 0.29 11.0 2.3 5.1 7.1 1.6 2.1 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family TGT PF01702.13 gi|344210796|ref|YP_004795116.1| - 5.8e-45 153.4 0.0 7.4e-45 153.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|344210796|ref|YP_004795116.1| - 0.016 15.0 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 C1 domain of tRNA-guanine transglycosylase dimerisation Epimerase PF01370.16 gi|344210797|ref|YP_004795117.1| - 7.6e-21 74.6 0.0 9.9e-20 70.9 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|344210797|ref|YP_004795117.1| - 8.5e-11 41.2 0.0 1.6e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|344210797|ref|YP_004795117.1| - 3.1e-08 33.8 0.2 4.4e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|344210797|ref|YP_004795117.1| - 4.8e-06 25.6 0.0 1e-05 24.6 0.0 1.5 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|344210797|ref|YP_004795117.1| - 0.00042 19.2 0.0 0.11 11.3 0.0 2.9 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|344210797|ref|YP_004795117.1| - 0.0051 15.5 0.0 0.0071 15.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Alginate_lyase PF05426.7 gi|344210798|ref|YP_004795118.1| - 4.1e-51 173.9 3.0 6.1e-51 173.3 2.1 1.2 1 0 0 1 1 1 1 Alginate lyase TGT_C2 PF14810.1 gi|344210799|ref|YP_004795119.1| - 4.1e-21 74.6 0.1 1.1e-20 73.2 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|344210799|ref|YP_004795119.1| - 9.5e-18 64.3 0.0 2.8e-17 62.8 0.0 1.7 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|344210799|ref|YP_004795119.1| - 1.9e-12 46.6 0.1 1.2e-11 44.1 0.0 2.2 2 0 0 2 2 2 1 PUA domain VanZ PF04892.7 gi|344210800|ref|YP_004795120.1| - 2e-07 30.9 0.3 2.6e-07 30.6 0.2 1.1 1 0 0 1 1 1 1 VanZ like family DUF2279 PF10043.4 gi|344210800|ref|YP_004795120.1| - 0.0034 17.6 0.0 0.005 17.0 0.0 1.2 1 0 0 1 1 1 1 Predicted periplasmic lipoprotein (DUF2279) Radical_SAM PF04055.16 gi|344210801|ref|YP_004795121.1| - 0.00047 20.3 0.0 0.00089 19.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1414 PF07208.6 gi|344210801|ref|YP_004795121.1| - 0.19 11.4 0.1 0.33 10.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1414) TOBE PF03459.12 gi|344210802|ref|YP_004795122.1| - 2.3e-15 56.4 12.0 6.9e-13 48.5 0.4 3.5 3 0 0 3 3 3 2 TOBE domain HTH_1 PF00126.22 gi|344210802|ref|YP_004795122.1| - 1.4e-08 34.3 0.2 2.7e-08 33.4 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF1932 PF09130.6 gi|344210802|ref|YP_004795122.1| - 0.017 14.8 0.0 0.05 13.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1932) SAF PF08666.7 gi|344210802|ref|YP_004795122.1| - 0.11 12.9 1.3 6.5 7.2 0.0 2.5 1 1 1 2 2 2 0 SAF domain TOBE_2 PF08402.5 gi|344210802|ref|YP_004795122.1| - 0.36 10.8 5.4 0.4 10.7 0.1 3.1 2 1 1 3 3 3 0 TOBE domain PBP_like_2 PF12849.2 gi|344210803|ref|YP_004795123.1| - 2e-25 89.8 3.6 3e-25 89.2 2.5 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|344210803|ref|YP_004795123.1| - 2.4e-11 43.7 0.0 4.1e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|344210803|ref|YP_004795123.1| - 0.063 12.2 0.1 0.42 9.5 0.0 2.1 1 1 0 1 1 1 0 PBP superfamily domain TAT_signal PF10518.4 gi|344210803|ref|YP_004795123.1| - 0.064 13.2 4.5 0.11 12.5 1.3 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Herpes_capsid PF06112.6 gi|344210803|ref|YP_004795123.1| - 0.78 9.7 3.1 45 4.0 0.0 2.4 2 0 0 2 2 2 0 Gammaherpesvirus capsid protein BPD_transp_1 PF00528.17 gi|344210804|ref|YP_004795124.1| - 7.7e-11 41.8 9.5 7.7e-11 41.8 6.6 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF1056 PF06341.6 gi|344210804|ref|YP_004795124.1| - 0.025 14.6 0.1 0.025 14.6 0.1 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1056) AIRS PF00586.19 gi|344210804|ref|YP_004795124.1| - 0.13 12.4 0.3 0.25 11.6 0.2 1.5 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain ABC_tran PF00005.22 gi|344210805|ref|YP_004795125.1| - 8.3e-33 113.5 0.0 1.2e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344210805|ref|YP_004795125.1| - 5.7e-10 39.6 0.0 0.0001 22.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344210805|ref|YP_004795125.1| - 2.2e-06 27.7 0.9 2e-05 24.6 0.6 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|344210805|ref|YP_004795125.1| - 7.6e-06 25.5 0.0 0.0035 17.0 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain MobB PF03205.9 gi|344210805|ref|YP_004795125.1| - 3e-05 23.7 0.0 0.0023 17.6 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|344210805|ref|YP_004795125.1| - 0.00012 21.3 0.0 0.0057 15.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|344210805|ref|YP_004795125.1| - 0.00016 22.4 0.2 0.00022 22.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|344210805|ref|YP_004795125.1| - 0.00018 21.1 0.1 0.0033 17.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|344210805|ref|YP_004795125.1| - 0.00025 21.1 0.0 0.0012 19.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344210805|ref|YP_004795125.1| - 0.00063 19.2 1.3 0.008 15.5 0.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|344210805|ref|YP_004795125.1| - 0.00097 18.6 0.0 0.63 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_18 PF13238.1 gi|344210805|ref|YP_004795125.1| - 0.0017 18.7 0.0 0.0039 17.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|344210805|ref|YP_004795125.1| - 0.003 17.4 0.0 0.0073 16.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|344210805|ref|YP_004795125.1| - 0.0054 16.2 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|344210805|ref|YP_004795125.1| - 0.0083 16.0 0.2 0.13 12.2 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|344210805|ref|YP_004795125.1| - 0.0083 16.3 0.0 0.039 14.1 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|344210805|ref|YP_004795125.1| - 0.0091 15.9 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|344210805|ref|YP_004795125.1| - 0.011 15.1 0.0 0.11 11.8 0.0 2.2 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF258 PF03193.11 gi|344210805|ref|YP_004795125.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|344210805|ref|YP_004795125.1| - 0.02 14.5 0.1 0.038 13.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|344210805|ref|YP_004795125.1| - 0.024 14.2 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_24 PF13479.1 gi|344210805|ref|YP_004795125.1| - 0.026 14.1 0.1 0.042 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain Ldh_2 PF02615.9 gi|344210805|ref|YP_004795125.1| - 0.027 13.1 0.0 0.039 12.6 0.0 1.2 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase AAA_5 PF07728.9 gi|344210805|ref|YP_004795125.1| - 0.031 14.0 0.1 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|344210805|ref|YP_004795125.1| - 0.039 13.6 0.0 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase SRP54 PF00448.17 gi|344210805|ref|YP_004795125.1| - 0.051 13.0 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|344210805|ref|YP_004795125.1| - 0.058 12.6 0.0 0.24 10.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Zeta_toxin PF06414.7 gi|344210805|ref|YP_004795125.1| - 0.072 12.1 0.0 0.28 10.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.1 gi|344210805|ref|YP_004795125.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|344210805|ref|YP_004795125.1| - 0.1 11.1 0.0 6.8 5.1 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|344210805|ref|YP_004795125.1| - 0.11 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase Miro PF08477.8 gi|344210805|ref|YP_004795125.1| - 0.13 12.7 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|344210805|ref|YP_004795125.1| - 0.17 12.1 0.1 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|344210805|ref|YP_004795125.1| - 0.26 10.3 0.0 4.6 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain GATase_5 PF13507.1 gi|344210806|ref|YP_004795126.1| - 1.9e-45 154.8 0.0 2.3e-45 154.5 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|344210806|ref|YP_004795126.1| - 2.5e-08 33.5 0.0 2.7e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|344210806|ref|YP_004795126.1| - 4e-07 29.7 0.0 9.6e-07 28.5 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|344210806|ref|YP_004795126.1| - 0.00034 20.1 0.0 0.00052 19.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|344210806|ref|YP_004795126.1| - 0.0038 16.6 0.1 0.0093 15.4 0.1 1.5 1 1 0 1 1 1 1 Peptidase C26 DUF4066 PF13278.1 gi|344210806|ref|YP_004795126.1| - 0.0077 15.5 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase SNO PF01174.14 gi|344210806|ref|YP_004795126.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family PurS PF02700.9 gi|344210807|ref|YP_004795127.1| - 1.6e-26 92.0 0.0 1.8e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase CHAD PF05235.9 gi|344210807|ref|YP_004795127.1| - 0.026 14.1 0.9 0.03 13.8 0.6 1.1 1 0 0 1 1 1 0 CHAD domain GAF PF01590.21 gi|344210808|ref|YP_004795128.1| - 3.1e-08 33.8 0.0 4.2e-08 33.4 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|344210808|ref|YP_004795128.1| - 0.00099 19.2 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|344210808|ref|YP_004795128.1| - 0.0011 19.4 0.0 0.0014 19.1 0.0 1.1 1 0 0 1 1 1 1 GAF domain Formyl_trans_N PF00551.14 gi|344210809|ref|YP_004795129.1| - 3.3e-43 147.3 0.2 3.4e-42 144.0 0.0 2.2 2 1 1 3 3 3 1 Formyl transferase ACT_6 PF13740.1 gi|344210809|ref|YP_004795129.1| - 3.1e-11 42.8 0.6 8e-11 41.5 0.2 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|344210809|ref|YP_004795129.1| - 1.9e-07 30.4 1.4 6.1e-07 28.7 0.2 2.4 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|344210809|ref|YP_004795129.1| - 0.00022 21.4 0.2 0.0007 19.8 0.1 1.8 2 0 0 2 2 2 1 ACT domain Glyco_transf_28 PF03033.15 gi|344210809|ref|YP_004795129.1| - 0.052 13.3 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain DUF2653 PF10850.3 gi|344210809|ref|YP_004795129.1| - 0.07 13.4 0.1 6.4 7.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2653) SAICAR_synt PF01259.13 gi|344210810|ref|YP_004795130.1| - 1.5e-18 66.8 0.0 3.2e-18 65.7 0.0 1.4 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.1 gi|344210810|ref|YP_004795130.1| - 0.085 12.6 0.1 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) DUF4259 PF14078.1 gi|344210810|ref|YP_004795130.1| - 0.28 11.6 4.4 0.17 12.3 1.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4259) Na_Ca_ex PF01699.19 gi|344210811|ref|YP_004795131.1| - 1.4e-40 138.1 23.6 1.7e-20 73.0 4.5 2.4 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF2003 PF09404.5 gi|344210811|ref|YP_004795131.1| - 0.078 11.3 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF2003) Radical_SAM PF04055.16 gi|344210812|ref|YP_004795132.1| - 2.6e-13 50.4 0.1 5.2e-13 49.4 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|344210813|ref|YP_004795133.1| - 4.8e-16 59.3 0.1 8.4e-16 58.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CofC PF01983.11 gi|344210814|ref|YP_004795134.1| - 3.7e-36 124.1 0.0 4e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|344210814|ref|YP_004795134.1| - 0.00089 19.3 1.8 0.0016 18.5 1.2 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF4398 PF14346.1 gi|344210815|ref|YP_004795135.1| - 7.6e-06 25.9 12.1 7.6e-06 25.9 8.4 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) DUF4366 PF14283.1 gi|344210815|ref|YP_004795135.1| - 7e-05 22.3 2.5 0.03 13.7 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4366) CD34_antigen PF06365.7 gi|344210815|ref|YP_004795135.1| - 0.074 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 CD34/Podocalyxin family PTS_IIA PF02255.11 gi|344210815|ref|YP_004795135.1| - 0.38 10.6 9.3 0.044 13.6 2.0 2.4 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIA subunit Tubulin PF00091.20 gi|344210816|ref|YP_004795136.1| - 1.4e-24 87.1 0.0 3.4e-24 85.8 0.0 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain NAD_binding_10 PF13460.1 gi|344210817|ref|YP_004795137.1| - 1.4e-30 106.6 0.0 1.7e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|344210817|ref|YP_004795137.1| - 3.9e-21 75.5 0.0 2.3e-20 73.0 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344210817|ref|YP_004795137.1| - 1.3e-15 56.8 0.0 1.5e-13 50.0 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|344210817|ref|YP_004795137.1| - 7.2e-13 48.3 0.0 8.2e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.12 gi|344210817|ref|YP_004795137.1| - 9.6e-12 44.3 0.0 2.6e-05 23.2 0.0 2.7 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|344210817|ref|YP_004795137.1| - 9.4e-08 31.2 0.0 0.0038 16.2 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|344210817|ref|YP_004795137.1| - 8.3e-06 24.9 0.0 0.00013 21.0 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|344210817|ref|YP_004795137.1| - 1.4e-05 25.0 0.0 3.9e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|344210817|ref|YP_004795137.1| - 0.00028 20.8 0.0 0.00053 19.9 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|344210817|ref|YP_004795137.1| - 0.00093 19.0 0.0 0.0023 17.7 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.5 gi|344210817|ref|YP_004795137.1| - 0.0044 16.7 0.1 0.02 14.5 0.0 2.0 2 1 0 2 2 2 1 KR domain F420_oxidored PF03807.12 gi|344210817|ref|YP_004795137.1| - 0.015 15.6 0.0 0.032 14.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_4 PF13579.1 gi|344210817|ref|YP_004795137.1| - 0.022 14.9 0.1 0.075 13.1 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain DapB_N PF01113.15 gi|344210817|ref|YP_004795137.1| - 0.055 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|344210817|ref|YP_004795137.1| - 0.066 12.3 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|344210817|ref|YP_004795137.1| - 0.097 12.9 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Thymidylate_kin PF02223.12 gi|344210818|ref|YP_004795138.1| - 6e-33 113.7 0.0 7.3e-33 113.5 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|344210818|ref|YP_004795138.1| - 7.2e-06 25.9 0.1 1.5e-05 24.9 0.1 1.6 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|344210818|ref|YP_004795138.1| - 1.2e-05 25.6 0.0 0.0003 21.0 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|344210818|ref|YP_004795138.1| - 0.0085 16.0 0.7 0.011 15.6 0.5 1.3 1 1 0 1 1 1 1 AAA domain Arf PF00025.16 gi|344210818|ref|YP_004795138.1| - 0.022 14.0 0.0 0.03 13.5 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family SRPRB PF09439.5 gi|344210818|ref|YP_004795138.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|344210818|ref|YP_004795138.1| - 0.16 12.1 0.0 0.4 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Polysacc_synt_3 PF13440.1 gi|344210819|ref|YP_004795139.1| - 0.13 11.6 10.4 0.16 11.3 7.2 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein SBF PF01758.11 gi|344210819|ref|YP_004795139.1| - 0.2 11.0 11.0 0.41 10.0 7.7 1.6 1 1 0 1 1 1 0 Sodium Bile acid symporter family Polysacc_synt_C PF14667.1 gi|344210819|ref|YP_004795139.1| - 0.32 10.7 12.5 0.41 10.4 8.7 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain YqhR PF11085.3 gi|344210819|ref|YP_004795139.1| - 1 8.8 9.5 1.3 8.5 6.6 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF2157 PF09925.4 gi|344210819|ref|YP_004795139.1| - 2.1 7.9 6.4 2.5 7.6 4.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) Yip1 PF04893.12 gi|344210819|ref|YP_004795139.1| - 2.8 7.3 12.2 5.3 6.5 8.5 1.6 1 1 0 1 1 1 0 Yip1 domain DUF2207 PF09972.4 gi|344210819|ref|YP_004795139.1| - 9.4 4.6 6.9 13 4.2 4.7 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) AsnC_trans_reg PF01037.16 gi|344210820|ref|YP_004795140.1| - 7.9e-11 41.5 0.1 8.7e-11 41.3 0.1 1.0 1 0 0 1 1 1 1 AsnC family Lysozyme_like PF13702.1 gi|344210820|ref|YP_004795140.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Lysozyme-like TrkA_N PF02254.13 gi|344210821|ref|YP_004795141.1| - 7e-25 87.2 0.5 1.1e-24 86.7 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|344210821|ref|YP_004795141.1| - 1.3e-10 40.6 0.1 3.6e-10 39.2 0.0 1.8 2 0 0 2 2 1 1 TrkA-C domain FAD_binding_3 PF01494.14 gi|344210821|ref|YP_004795141.1| - 1.5e-06 27.5 0.2 2e-06 27.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|344210821|ref|YP_004795141.1| - 3.1e-06 26.3 0.6 4.8e-06 25.7 0.3 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|344210821|ref|YP_004795141.1| - 9.7e-06 25.0 0.1 2.4e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|344210821|ref|YP_004795141.1| - 1.5e-05 25.0 0.7 2.1e-05 24.5 0.5 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|344210821|ref|YP_004795141.1| - 1.5e-05 24.6 0.5 2.4e-05 24.0 0.3 1.4 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|344210821|ref|YP_004795141.1| - 1.6e-05 24.4 0.2 3.1e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.1 gi|344210821|ref|YP_004795141.1| - 0.00011 22.4 0.1 0.00021 21.5 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|344210821|ref|YP_004795141.1| - 0.00011 22.4 0.3 0.00025 21.3 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|344210821|ref|YP_004795141.1| - 0.00021 20.6 0.1 0.00039 19.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_8 PF13450.1 gi|344210821|ref|YP_004795141.1| - 0.0006 19.7 0.6 0.0013 18.6 0.4 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|344210821|ref|YP_004795141.1| - 0.00065 19.3 0.4 0.0013 18.3 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|344210821|ref|YP_004795141.1| - 0.0011 18.7 0.1 0.0037 17.0 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|344210821|ref|YP_004795141.1| - 0.0012 18.0 0.2 0.0021 17.2 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|344210821|ref|YP_004795141.1| - 0.0014 18.5 0.1 0.0016 18.3 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|344210821|ref|YP_004795141.1| - 0.0031 17.8 0.1 0.0054 17.0 0.0 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|344210821|ref|YP_004795141.1| - 0.0031 17.3 0.2 0.0063 16.3 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase HI0933_like PF03486.9 gi|344210821|ref|YP_004795141.1| - 0.0034 15.9 0.0 0.0061 15.0 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|344210821|ref|YP_004795141.1| - 0.0037 16.1 0.2 0.0037 16.1 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|344210821|ref|YP_004795141.1| - 0.0042 17.4 0.4 0.031 14.6 0.2 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Thi4 PF01946.12 gi|344210821|ref|YP_004795141.1| - 0.0052 15.9 0.0 0.0082 15.2 0.0 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|344210821|ref|YP_004795141.1| - 0.012 15.6 0.1 0.013 15.5 0.1 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.17 gi|344210821|ref|YP_004795141.1| - 0.013 15.9 0.1 0.024 15.1 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|344210821|ref|YP_004795141.1| - 0.024 14.7 0.3 0.071 13.2 0.1 1.8 1 1 1 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Saccharop_dh PF03435.13 gi|344210821|ref|YP_004795141.1| - 0.026 13.5 0.3 0.031 13.2 0.2 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|344210821|ref|YP_004795141.1| - 0.027 13.7 0.5 0.093 11.9 0.3 1.7 1 1 1 2 2 2 0 NmrA-like family AdoHcyase_NAD PF00670.16 gi|344210821|ref|YP_004795141.1| - 0.047 13.5 0.2 0.17 11.7 0.1 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain adh_short PF00106.20 gi|344210821|ref|YP_004795141.1| - 0.049 13.5 1.4 0.092 12.6 0.9 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Rossmann-like PF10727.4 gi|344210821|ref|YP_004795141.1| - 0.068 12.8 0.2 0.22 11.2 0.1 1.9 2 0 0 2 2 2 0 Rossmann-like domain Shikimate_DH PF01488.15 gi|344210821|ref|YP_004795141.1| - 0.087 12.9 0.3 0.17 12.0 0.2 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Methyltransf_31 PF13847.1 gi|344210821|ref|YP_004795141.1| - 0.12 11.9 0.1 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Glyoxalase PF00903.20 gi|344210821|ref|YP_004795141.1| - 0.16 11.9 0.1 0.41 10.6 0.0 1.7 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AsnC_trans_reg PF01037.16 gi|344210822|ref|YP_004795142.1| - 3.8e-14 52.1 0.6 4.2e-14 51.9 0.4 1.0 1 0 0 1 1 1 1 AsnC family SnoaL_2 PF12680.2 gi|344210823|ref|YP_004795143.1| - 0.38 11.1 3.7 0.36 11.2 0.5 2.0 1 1 1 2 2 2 0 SnoaL-like domain CopD PF05425.8 gi|344210825|ref|YP_004795145.1| - 0.017 15.3 1.1 0.017 15.3 0.8 1.6 1 1 0 1 1 1 0 Copper resistance protein D BaxI_1 PF12811.2 gi|344210825|ref|YP_004795145.1| - 0.15 11.1 1.0 0.21 10.6 0.7 1.1 1 0 0 1 1 1 0 Bax inhibitor 1 like DUF3292 PF11696.3 gi|344210825|ref|YP_004795145.1| - 0.24 9.2 0.8 0.3 8.8 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3292) ABC_tran PF00005.22 gi|344210826|ref|YP_004795146.1| - 2.6e-33 115.2 0.0 5.8e-33 114.0 0.0 1.6 2 0 0 2 2 1 1 ABC transporter oligo_HPY PF08352.7 gi|344210826|ref|YP_004795146.1| - 3.7e-18 65.6 0.7 7.9e-18 64.5 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|344210826|ref|YP_004795146.1| - 2.8e-07 30.8 0.2 6.7e-05 22.9 0.0 2.3 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|344210826|ref|YP_004795146.1| - 0.0029 16.8 0.0 0.01 15.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|344210826|ref|YP_004795146.1| - 0.012 15.8 0.8 0.075 13.1 0.6 2.1 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|344210826|ref|YP_004795146.1| - 0.013 15.0 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|344210826|ref|YP_004795146.1| - 0.014 15.3 0.3 0.044 13.7 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|344210826|ref|YP_004795146.1| - 0.016 15.4 0.0 0.05 13.8 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|344210826|ref|YP_004795146.1| - 0.025 13.7 0.0 0.043 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 TPR_8 PF13181.1 gi|344210826|ref|YP_004795146.1| - 0.031 14.0 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Tetratricopeptide repeat Sigma54_activat PF00158.21 gi|344210826|ref|YP_004795146.1| - 0.034 13.6 0.1 8.4 5.8 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|344210826|ref|YP_004795146.1| - 0.066 12.3 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|344210826|ref|YP_004795146.1| - 0.068 12.7 0.2 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|344210826|ref|YP_004795146.1| - 0.076 11.4 0.1 5.8 5.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|344210826|ref|YP_004795146.1| - 0.088 12.2 0.3 0.23 10.9 0.2 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.1 gi|344210826|ref|YP_004795146.1| - 0.11 12.7 0.1 0.6 10.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|344210826|ref|YP_004795146.1| - 0.12 12.1 1.4 1.6 8.4 1.0 2.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|344210826|ref|YP_004795146.1| - 0.13 12.2 0.1 0.58 10.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|344210826|ref|YP_004795146.1| - 0.25 10.7 1.3 1 8.7 0.3 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|344210827|ref|YP_004795147.1| - 4.7e-30 104.6 0.0 7.9e-30 103.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|344210827|ref|YP_004795147.1| - 3.1e-18 65.8 0.5 6.6e-18 64.8 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|344210827|ref|YP_004795147.1| - 6.9e-09 36.0 0.0 2.8e-06 27.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344210827|ref|YP_004795147.1| - 8e-05 21.9 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|344210827|ref|YP_004795147.1| - 0.0069 16.5 0.6 0.13 12.4 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344210827|ref|YP_004795147.1| - 0.021 14.3 0.1 0.039 13.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|344210827|ref|YP_004795147.1| - 0.022 14.2 0.2 0.12 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain Sigma54_activat PF00158.21 gi|344210827|ref|YP_004795147.1| - 0.046 13.1 0.1 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF87 PF01935.12 gi|344210827|ref|YP_004795147.1| - 0.054 13.3 0.1 0.097 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|344210827|ref|YP_004795147.1| - 0.066 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|344210827|ref|YP_004795147.1| - 0.096 11.7 0.2 0.25 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.1 gi|344210827|ref|YP_004795147.1| - 0.099 12.6 0.7 0.22 11.4 0.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|344210827|ref|YP_004795147.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain BPD_transp_1 PF00528.17 gi|344210828|ref|YP_004795148.1| - 7.7e-18 64.6 13.5 7.7e-18 64.6 9.4 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|344210828|ref|YP_004795148.1| - 3.4e-05 23.1 2.3 6.8e-05 22.1 0.0 2.8 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|344210829|ref|YP_004795149.1| - 8.8e-34 116.6 11.2 8.8e-34 116.6 7.8 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|344210830|ref|YP_004795150.1| - 3e-64 217.1 5.2 3e-64 217.1 3.6 1.4 1 1 1 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|344210830|ref|YP_004795150.1| - 6.8e-05 22.5 2.8 0.00013 21.6 1.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_15 PF13459.1 gi|344210831|ref|YP_004795151.1| - 0.033 14.7 1.1 0.059 13.9 0.6 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|344210831|ref|YP_004795151.1| - 0.042 13.6 0.2 0.1 12.4 0.1 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster SHS2_FTSA PF02491.15 gi|344210831|ref|YP_004795151.1| - 0.089 12.6 0.1 0.19 11.6 0.1 1.6 1 1 0 1 1 1 0 SHS2 domain inserted in FTSA MOSC PF03473.12 gi|344210832|ref|YP_004795152.1| - 1.8e-20 72.7 0.0 2.5e-20 72.2 0.0 1.2 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|344210832|ref|YP_004795152.1| - 3.5e-15 55.7 0.3 7.8e-15 54.6 0.2 1.7 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain bPH_2 PF03703.9 gi|344210832|ref|YP_004795152.1| - 0.068 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain Pro_isomerase PF00160.16 gi|344210833|ref|YP_004795153.1| - 1.1e-45 155.5 0.0 1.4e-45 155.2 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Abhydrolase_6 PF12697.2 gi|344210834|ref|YP_004795154.1| - 6.6e-39 134.1 8.1 8.3e-39 133.8 5.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344210834|ref|YP_004795154.1| - 2.8e-25 89.2 0.1 5.8e-25 88.1 0.1 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|344210834|ref|YP_004795154.1| - 1.3e-16 60.6 0.1 4.5e-16 58.9 0.1 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|344210834|ref|YP_004795154.1| - 2.7e-08 33.5 0.1 4.8e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase DLH PF01738.13 gi|344210834|ref|YP_004795154.1| - 0.0032 16.7 0.0 0.085 12.1 0.0 2.5 2 1 0 2 2 2 1 Dienelactone hydrolase family PGAP1 PF07819.8 gi|344210834|ref|YP_004795154.1| - 0.037 13.6 0.0 0.061 12.8 0.0 1.5 1 1 0 1 1 1 0 PGAP1-like protein Thioesterase PF00975.15 gi|344210834|ref|YP_004795154.1| - 0.055 13.6 0.0 0.076 13.2 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Peptidase_S9 PF00326.16 gi|344210834|ref|YP_004795154.1| - 0.13 11.5 0.0 0.78 8.9 0.0 2.1 2 1 0 2 2 2 0 Prolyl oligopeptidase family Glycos_transf_3 PF00591.16 gi|344210835|ref|YP_004795155.1| - 4e-32 111.6 0.0 5.5e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|344210835|ref|YP_004795155.1| - 4.9e-12 45.2 0.7 2.1e-11 43.2 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Tol_Tol_Ttg2 PF05494.7 gi|344210835|ref|YP_004795155.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Toluene tolerance, Ttg2 DUF2613 PF11021.3 gi|344210835|ref|YP_004795155.1| - 0.04 13.6 0.5 0.1 12.2 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) HTH_AsnC-type PF13404.1 gi|344210836|ref|YP_004795156.1| - 7.6e-14 50.9 0.2 2e-07 30.4 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|344210836|ref|YP_004795156.1| - 1.9e-06 27.1 0.0 0.045 13.1 0.0 2.8 2 1 0 2 2 2 2 Winged helix-turn-helix DNA-binding HalX PF08663.5 gi|344210837|ref|YP_004795157.1| - 8.1e-23 80.2 8.6 8.1e-23 80.2 5.9 1.9 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|344210837|ref|YP_004795157.1| - 5.8e-18 64.9 0.3 1.1e-17 64.0 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain GCHY-1 PF02649.9 gi|344210838|ref|YP_004795158.1| - 5.9e-86 288.1 0.6 6.7e-86 287.9 0.4 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 CDC37_C PF08564.5 gi|344210838|ref|YP_004795158.1| - 0.028 14.2 0.1 0.095 12.5 0.0 1.9 2 0 0 2 2 2 0 Cdc37 C terminal domain DUF1770 PF08589.5 gi|344210838|ref|YP_004795158.1| - 0.063 13.8 2.7 0.28 11.8 1.8 2.3 1 1 0 1 1 1 0 Fungal protein of unknown function (DUF1770) DDE_3 PF13358.1 gi|344210839|ref|YP_004795159.1| - 1.2e-26 93.2 0.0 1.4e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|344210839|ref|YP_004795159.1| - 8.3e-07 29.1 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_ISAZ013 PF07592.6 gi|344210839|ref|YP_004795159.1| - 0.13 10.9 0.0 0.22 10.2 0.0 1.3 1 1 0 1 1 1 0 Rhodopirellula transposase DDE domain HTH_33 PF13592.1 gi|344210840|ref|YP_004795160.1| - 3.5e-16 58.5 0.1 7.5e-16 57.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_29 PF13551.1 gi|344210840|ref|YP_004795160.1| - 4.8e-12 46.0 0.0 8.2e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|344210840|ref|YP_004795160.1| - 1.1e-07 32.5 0.7 6.9e-07 29.9 0.1 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|344210840|ref|YP_004795160.1| - 0.0047 16.5 0.0 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|344210840|ref|YP_004795160.1| - 0.006 16.5 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|344210840|ref|YP_004795160.1| - 0.0074 16.4 0.9 0.068 13.3 0.0 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|344210840|ref|YP_004795160.1| - 0.011 15.6 0.0 0.029 14.3 0.0 1.8 1 1 0 1 1 1 0 Transposase DDT PF02791.12 gi|344210840|ref|YP_004795160.1| - 0.011 15.4 0.0 5.4 6.8 0.0 2.2 2 0 0 2 2 2 0 DDT domain DUF1778 PF08681.6 gi|344210840|ref|YP_004795160.1| - 0.052 13.3 0.2 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) HTH_21 PF13276.1 gi|344210840|ref|YP_004795160.1| - 0.059 13.3 0.0 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 HTH-like domain HTH_24 PF13412.1 gi|344210840|ref|YP_004795160.1| - 0.12 11.7 0.0 1.8 7.9 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|344210841|ref|YP_004795161.1| - 2.4e-21 75.1 0.2 4.5e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|344210841|ref|YP_004795161.1| - 0.00019 20.4 0.0 0.00028 19.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PadR PF03551.9 gi|344210841|ref|YP_004795161.1| - 0.0026 17.4 0.0 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family PLDc_2 PF13091.1 gi|344210841|ref|YP_004795161.1| - 0.047 13.4 0.1 0.12 12.1 0.0 1.7 2 0 0 2 2 2 0 PLD-like domain E2F_TDP PF02319.15 gi|344210841|ref|YP_004795161.1| - 0.048 13.2 0.0 0.12 11.9 0.0 1.7 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Vir_act_alpha_C PF10400.4 gi|344210841|ref|YP_004795161.1| - 0.084 13.2 1.1 0.16 12.3 0.2 2.0 2 1 0 2 2 2 0 Virulence activator alpha C-term HTH_9 PF08221.6 gi|344210841|ref|YP_004795161.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain PhoU PF01895.14 gi|344210841|ref|YP_004795161.1| - 0.4 11.1 2.3 2.7 8.4 1.4 2.5 1 1 0 1 1 1 0 PhoU domain Thioredox_DsbH PF03190.10 gi|344210842|ref|YP_004795162.1| - 9.6e-25 87.1 0.0 1.7e-24 86.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|344210842|ref|YP_004795162.1| - 7.1e-11 41.9 0.0 2e-10 40.5 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin-like Glyco_hydro_88 PF07470.8 gi|344210842|ref|YP_004795162.1| - 2.3e-05 23.6 0.0 0.051 12.6 0.0 2.7 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Thioredoxin PF00085.15 gi|344210842|ref|YP_004795162.1| - 4.3e-05 23.1 0.0 8.4e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|344210842|ref|YP_004795162.1| - 0.0012 18.9 0.0 0.0072 16.5 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_76 PF03663.9 gi|344210842|ref|YP_004795162.1| - 0.066 12.5 2.9 2.1 7.6 1.9 2.5 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 DUF1680 PF07944.7 gi|344210842|ref|YP_004795162.1| - 0.13 10.5 0.2 11 4.1 0.0 2.2 2 0 0 2 2 2 0 Putative glycosyl hydrolase of unknown function (DUF1680) Prenyltrans_1 PF13243.1 gi|344210842|ref|YP_004795162.1| - 0.44 10.5 3.9 2.8 7.9 1.3 2.8 2 1 0 2 2 2 0 Prenyltransferase-like p450 PF00067.17 gi|344210843|ref|YP_004795163.1| - 2e-79 267.2 0.0 2.3e-79 267.1 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 FxsA PF04186.8 gi|344210844|ref|YP_004795164.1| - 8.3e-30 102.8 8.1 1.1e-29 102.5 5.6 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein SNARE_assoc PF09335.6 gi|344210844|ref|YP_004795164.1| - 0.82 9.8 6.1 3.4 7.9 4.1 1.9 1 1 1 2 2 2 0 SNARE associated Golgi protein Methyltransf_18 PF12847.2 gi|344210845|ref|YP_004795165.1| - 3.7e-16 59.6 0.0 6.8e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344210845|ref|YP_004795165.1| - 2.9e-13 49.6 0.0 4e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344210845|ref|YP_004795165.1| - 4.1e-12 46.1 0.0 4.7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344210845|ref|YP_004795165.1| - 7.6e-12 45.5 0.0 1.5e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344210845|ref|YP_004795165.1| - 2.7e-11 43.8 0.1 5.9e-11 42.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344210845|ref|YP_004795165.1| - 7.9e-11 42.2 0.0 1.7e-10 41.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344210845|ref|YP_004795165.1| - 8.4e-11 41.9 0.1 1.6e-10 41.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344210845|ref|YP_004795165.1| - 1.6e-09 37.3 0.0 2.2e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|344210845|ref|YP_004795165.1| - 2e-06 27.1 0.0 3.6e-06 26.2 0.0 1.4 2 0 0 2 2 2 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|344210845|ref|YP_004795165.1| - 3.7e-05 22.9 0.0 5.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|344210845|ref|YP_004795165.1| - 0.00011 21.4 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|344210845|ref|YP_004795165.1| - 0.00022 20.6 0.0 0.00032 20.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) MetW PF07021.7 gi|344210845|ref|YP_004795165.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW N2227 PF07942.7 gi|344210845|ref|YP_004795165.1| - 0.014 14.3 0.0 0.026 13.4 0.0 1.4 1 0 0 1 1 1 0 N2227-like protein Topoisom_I PF01028.15 gi|344210845|ref|YP_004795165.1| - 0.082 11.9 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, catalytic core HTH_10 PF04967.7 gi|344210846|ref|YP_004795166.1| - 0.013 15.0 0.1 0.27 10.8 0.0 2.6 2 1 0 2 2 2 0 HTH DNA binding domain TAT_signal PF10518.4 gi|344210846|ref|YP_004795166.1| - 0.22 11.5 3.2 0.5 10.5 2.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence LMWPc PF01451.16 gi|344210847|ref|YP_004795167.1| - 1.1e-25 90.6 0.1 1.2e-25 90.3 0.0 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF4013 PF13197.1 gi|344210848|ref|YP_004795168.1| - 9.6e-28 96.6 20.4 1.3e-27 96.1 14.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) DUF650 PF04894.7 gi|344210849|ref|YP_004795169.1| - 7.6e-103 343.7 0.0 9.2e-103 343.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|344210849|ref|YP_004795169.1| - 1.2e-38 131.1 0.0 2.3e-38 130.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) 7TM-7TMR_HD PF07698.6 gi|344210850|ref|YP_004795170.1| - 0.052 13.0 10.7 0.064 12.6 7.5 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase DUF2104 PF09877.4 gi|344210850|ref|YP_004795170.1| - 0.07 13.1 2.4 0.071 13.0 1.0 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2104) SdpI PF13630.1 gi|344210850|ref|YP_004795170.1| - 0.96 9.2 9.2 1.8 8.3 1.7 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family DUF4231 PF14015.1 gi|344210850|ref|YP_004795170.1| - 6.4 6.7 9.8 1.2 9.1 4.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF2721 PF11026.3 gi|344210850|ref|YP_004795170.1| - 7.5 6.2 8.5 1.8 8.1 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) BCD PF15461.1 gi|344210850|ref|YP_004795170.1| - 8.6 5.6 12.2 1.4 8.3 2.7 2.0 1 1 1 2 2 2 0 Beta-carotene 15,15'-dioxygenase NfeD PF01957.13 gi|344210850|ref|YP_004795170.1| - 8.8 6.4 10.9 0.96 9.5 0.8 2.1 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding Bax1-I PF01027.15 gi|344210850|ref|YP_004795170.1| - 8.9 5.8 11.2 11 5.5 7.8 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 RVT_3 PF13456.1 gi|344210851|ref|YP_004795171.1| - 2.5e-22 78.4 0.0 4.4e-22 77.6 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|344210851|ref|YP_004795171.1| - 5.6e-14 52.6 0.0 7.7e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 RNase H PadR PF03551.9 gi|344210853|ref|YP_004795173.1| - 1.1e-17 63.5 0.3 1.5e-17 63.1 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|344210853|ref|YP_004795173.1| - 1.1e-05 25.6 0.0 3.6e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|344210853|ref|YP_004795173.1| - 0.0019 17.8 0.1 0.0032 17.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF505 PF04458.7 gi|344210853|ref|YP_004795173.1| - 0.0085 14.2 0.1 0.009 14.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_45 PF14947.1 gi|344210853|ref|YP_004795173.1| - 0.011 15.5 0.1 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.1 gi|344210853|ref|YP_004795173.1| - 0.025 14.1 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FUR PF01475.14 gi|344210853|ref|YP_004795173.1| - 0.059 13.2 0.0 0.077 12.9 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family Pyrophosphatase PF00719.14 gi|344210854|ref|YP_004795174.1| - 1.1e-54 184.0 1.7 1.3e-54 183.8 1.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Phosphodiest PF01663.17 gi|344210856|ref|YP_004795176.1| - 1.1e-55 189.4 0.4 1.3e-55 189.2 0.3 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2063 PF09836.4 gi|344210856|ref|YP_004795176.1| - 0.071 13.0 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) Sulfatase PF00884.18 gi|344210856|ref|YP_004795176.1| - 0.48 9.5 4.2 0.69 9.0 0.9 2.3 3 0 0 3 3 3 0 Sulfatase Tubulin PF00091.20 gi|344210857|ref|YP_004795177.1| - 9.3e-24 84.4 0.3 3.7e-23 82.4 0.2 1.9 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|344210857|ref|YP_004795177.1| - 0.0061 15.5 1.2 0.0064 15.4 0.1 1.5 2 0 0 2 2 2 1 Tubulin like HEM4 PF02602.10 gi|344210857|ref|YP_004795177.1| - 0.042 13.0 0.3 0.07 12.3 0.2 1.3 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD HTH_24 PF13412.1 gi|344210858|ref|YP_004795178.1| - 4.3e-07 29.2 0.0 6.4e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344210858|ref|YP_004795178.1| - 0.00013 21.5 0.1 0.00017 21.2 0.1 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|344210858|ref|YP_004795178.1| - 0.0004 19.8 0.0 0.00048 19.5 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|344210858|ref|YP_004795178.1| - 0.00055 19.3 0.1 0.00075 18.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|344210858|ref|YP_004795178.1| - 0.00069 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|344210858|ref|YP_004795178.1| - 0.0051 16.4 0.1 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344210858|ref|YP_004795178.1| - 0.0072 15.9 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|344210858|ref|YP_004795178.1| - 0.0091 15.6 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|344210858|ref|YP_004795178.1| - 0.022 14.3 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|344210858|ref|YP_004795178.1| - 0.036 14.1 0.0 0.048 13.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|344210858|ref|YP_004795178.1| - 0.044 13.2 0.0 0.083 12.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Sulfolobus_pRN PF05584.6 gi|344210858|ref|YP_004795178.1| - 0.055 13.4 0.0 0.065 13.2 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_Crp_2 PF13545.1 gi|344210858|ref|YP_004795178.1| - 0.077 12.7 0.0 0.088 12.6 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|344210858|ref|YP_004795178.1| - 0.086 12.8 0.0 0.2 11.6 0.0 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344210858|ref|YP_004795178.1| - 0.1 12.2 0.1 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|344210858|ref|YP_004795178.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_43 PF09904.4 gi|344210858|ref|YP_004795178.1| - 0.11 12.2 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_27 PF13463.1 gi|344210858|ref|YP_004795178.1| - 0.12 12.6 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Polyketide_cyc2 PF10604.4 gi|344210859|ref|YP_004795179.1| - 6.4e-18 65.2 1.4 7.9e-18 64.9 1.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|344210859|ref|YP_004795179.1| - 5.4e-07 29.6 0.1 1.3e-06 28.4 0.1 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|344210859|ref|YP_004795179.1| - 0.0015 18.6 0.2 0.0029 17.7 0.1 1.7 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Copper-bind PF00127.15 gi|344210860|ref|YP_004795180.1| - 1.1e-15 57.5 0.1 3.3e-15 56.1 0.1 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|344210860|ref|YP_004795180.1| - 0.002 17.9 8.9 0.002 17.9 6.2 3.4 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|344210860|ref|YP_004795180.1| - 0.032 14.1 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain CoA_transf_3 PF02515.12 gi|344210861|ref|YP_004795181.1| - 0.13 11.4 1.1 0.21 10.8 0.8 1.3 1 0 0 1 1 1 0 CoA-transferase family III DUF485 PF04341.7 gi|344210862|ref|YP_004795182.1| - 0.92 9.2 2.9 1.2 8.8 2.0 1.3 1 1 0 1 1 1 0 Protein of unknown function, DUF485 CcoS PF03597.10 gi|344210862|ref|YP_004795182.1| - 2.3 7.7 4.2 0.99 8.9 0.1 1.9 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type IncA PF04156.9 gi|344210862|ref|YP_004795182.1| - 6.3 6.3 5.6 7.2 6.1 3.9 1.0 1 0 0 1 1 1 0 IncA protein AMP-binding PF00501.23 gi|344210863|ref|YP_004795183.1| - 6.1e-05 21.5 0.0 0.051 11.9 0.0 2.3 2 0 0 2 2 2 2 AMP-binding enzyme MazG PF03819.12 gi|344210864|ref|YP_004795184.1| - 1.1e-05 25.2 0.6 3e-05 23.8 0.3 1.7 1 1 1 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain CTDII PF01556.13 gi|344210865|ref|YP_004795185.1| - 1.2e-34 118.0 0.0 1.1e-24 86.0 0.0 3.3 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|344210865|ref|YP_004795185.1| - 2.2e-24 84.9 4.9 6.6e-24 83.4 2.7 2.2 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|344210865|ref|YP_004795185.1| - 2.4e-15 56.2 17.5 4.9e-15 55.3 12.1 1.5 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.1 gi|344210865|ref|YP_004795185.1| - 0.0055 16.0 0.1 0.012 15.0 0.1 1.5 1 0 0 1 1 1 1 A repeated domain in UCH-protein A2L_zn_ribbon PF08792.5 gi|344210865|ref|YP_004795185.1| - 0.054 12.9 0.2 0.054 12.9 0.1 3.5 2 2 1 3 3 3 0 A2L zinc ribbon domain HypA PF01155.14 gi|344210865|ref|YP_004795185.1| - 1 9.0 10.0 2.1 8.0 1.3 2.3 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family GRP PF07172.6 gi|344210865|ref|YP_004795185.1| - 5.4 7.5 21.9 1.6 9.2 12.5 2.2 2 0 0 2 2 2 0 Glycine rich protein family Antiterm PF03589.8 gi|344210865|ref|YP_004795185.1| - 8.9 6.4 7.9 27 4.9 2.1 3.3 2 1 1 3 3 3 0 Antitermination protein DUF1628 PF07790.6 gi|344210866|ref|YP_004795186.1| - 0.00066 20.3 0.1 0.0026 18.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF1521 PF07481.6 gi|344210866|ref|YP_004795186.1| - 0.012 15.3 0.5 0.027 14.2 0.2 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1521) TrmB PF01978.14 gi|344210868|ref|YP_004795188.1| - 1e-18 66.7 0.1 3.8e-18 64.9 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|344210868|ref|YP_004795188.1| - 0.0083 16.0 0.0 0.054 13.4 0.0 2.1 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|344210868|ref|YP_004795188.1| - 0.0089 15.6 0.1 0.48 10.1 0.0 2.6 2 0 0 2 2 2 1 MarR family Phage_rep_org_N PF09681.5 gi|344210868|ref|YP_004795188.1| - 0.013 15.1 0.0 0.051 13.1 0.0 1.9 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) GntR PF00392.16 gi|344210868|ref|YP_004795188.1| - 0.047 13.1 0.0 0.15 11.5 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family E2F_TDP PF02319.15 gi|344210868|ref|YP_004795188.1| - 0.1 12.1 0.0 0.35 10.4 0.0 1.8 1 1 1 2 2 2 0 E2F/DP family winged-helix DNA-binding domain L27_2 PF09045.5 gi|344210868|ref|YP_004795188.1| - 0.17 11.4 0.7 1.3 8.6 0.1 2.6 3 0 0 3 3 3 0 L27_2 HSP70 PF00012.15 gi|344210870|ref|YP_004795190.1| - 1.5e-242 805.8 20.2 2.1e-240 798.7 14.0 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|344210870|ref|YP_004795190.1| - 1.4e-20 73.1 0.5 1.4e-20 73.1 0.4 2.5 2 1 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|344210870|ref|YP_004795190.1| - 0.0016 18.0 0.0 0.0035 16.9 0.0 1.6 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.6 gi|344210870|ref|YP_004795190.1| - 0.003 16.5 2.9 0.0048 15.8 0.0 2.6 4 0 0 4 4 4 1 StbA protein FtsA PF14450.1 gi|344210870|ref|YP_004795190.1| - 0.004 16.9 1.7 7.9 6.3 0.0 4.2 2 1 1 3 3 3 1 Cell division protein FtsA Hydantoinase_A PF01968.13 gi|344210870|ref|YP_004795190.1| - 0.01 14.9 7.9 0.077 12.0 0.0 3.9 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase FIVAR PF07554.8 gi|344210870|ref|YP_004795190.1| - 0.027 14.7 0.6 0.14 12.4 0.4 2.4 1 0 0 1 1 1 0 Uncharacterised Sugar-binding Domain Cwf_Cwc_15 PF04889.7 gi|344210870|ref|YP_004795190.1| - 8.1 6.0 20.9 28 4.3 14.5 1.9 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein GrpE PF01025.14 gi|344210871|ref|YP_004795191.1| - 5.3e-42 143.1 6.0 9.4e-42 142.3 4.2 1.4 1 0 0 1 1 1 1 GrpE Med9 PF07544.8 gi|344210871|ref|YP_004795191.1| - 0.00024 20.7 8.8 0.00035 20.2 3.9 2.6 2 1 0 2 2 1 1 RNA polymerase II transcription mediator complex subunit 9 DUF812 PF05667.6 gi|344210871|ref|YP_004795191.1| - 0.00078 18.0 5.9 0.00094 17.8 4.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Atg14 PF10186.4 gi|344210871|ref|YP_004795191.1| - 0.0012 17.8 2.4 0.0014 17.5 1.7 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 IncA PF04156.9 gi|344210871|ref|YP_004795191.1| - 0.0016 18.0 9.1 0.0024 17.5 6.3 1.3 1 0 0 1 1 1 1 IncA protein YscO PF07321.7 gi|344210871|ref|YP_004795191.1| - 0.0021 17.9 10.1 0.0042 16.9 7.0 1.5 1 0 0 1 1 1 1 Type III secretion protein YscO DUF3584 PF12128.3 gi|344210871|ref|YP_004795191.1| - 0.0028 15.0 9.2 0.0038 14.6 6.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) FliJ PF02050.11 gi|344210871|ref|YP_004795191.1| - 0.0047 16.9 8.6 0.0089 16.0 5.9 1.4 1 0 0 1 1 1 1 Flagellar FliJ protein Leu_zip PF15294.1 gi|344210871|ref|YP_004795191.1| - 0.0064 15.6 7.0 0.0095 15.0 4.8 1.2 1 0 0 1 1 1 1 Leucine zipper SlyX PF04102.7 gi|344210871|ref|YP_004795191.1| - 0.0071 16.6 7.9 0.0071 16.6 5.5 2.3 2 1 0 2 2 1 1 SlyX DUF972 PF06156.8 gi|344210871|ref|YP_004795191.1| - 0.0071 16.6 6.3 0.012 15.9 4.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Bacillus_HBL PF05791.6 gi|344210871|ref|YP_004795191.1| - 0.009 15.3 3.1 0.015 14.6 2.2 1.4 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) Fmp27_WPPW PF10359.4 gi|344210871|ref|YP_004795191.1| - 0.01 14.2 3.5 0.012 14.0 2.4 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CENP-Q PF13094.1 gi|344210871|ref|YP_004795191.1| - 0.011 15.7 8.6 0.024 14.6 6.0 1.5 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Phage_GP20 PF06810.6 gi|344210871|ref|YP_004795191.1| - 0.014 14.8 8.3 0.027 13.9 5.8 1.5 1 0 0 1 1 1 0 Phage minor structural protein GP20 FliD_C PF07195.7 gi|344210871|ref|YP_004795191.1| - 0.021 14.1 0.6 0.036 13.3 0.4 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus GvpL_GvpF PF06386.6 gi|344210871|ref|YP_004795191.1| - 0.023 14.3 5.0 0.036 13.6 3.5 1.4 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF641 PF04859.7 gi|344210871|ref|YP_004795191.1| - 0.024 14.3 3.3 0.045 13.5 2.3 1.5 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Macoilin PF09726.4 gi|344210871|ref|YP_004795191.1| - 0.025 12.8 5.3 0.027 12.7 3.6 1.1 1 0 0 1 1 1 0 Transmembrane protein OmpH PF03938.9 gi|344210871|ref|YP_004795191.1| - 0.028 14.3 14.1 0.039 13.8 9.7 1.4 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) AAA_13 PF13166.1 gi|344210871|ref|YP_004795191.1| - 0.031 12.7 1.8 0.036 12.5 1.3 1.1 1 0 0 1 1 1 0 AAA domain Herpes_UL6 PF01763.11 gi|344210871|ref|YP_004795191.1| - 0.033 12.3 2.1 0.036 12.2 1.5 1.1 1 0 0 1 1 1 0 Herpesvirus UL6 like Spectrin PF00435.16 gi|344210871|ref|YP_004795191.1| - 0.034 14.4 7.6 2.3 8.5 0.1 2.5 1 1 1 2 2 2 0 Spectrin repeat Spc7 PF08317.6 gi|344210871|ref|YP_004795191.1| - 0.036 12.7 5.0 0.05 12.2 3.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein PsbQ PF05757.6 gi|344210871|ref|YP_004795191.1| - 0.048 13.0 3.8 0.074 12.4 2.7 1.3 1 0 0 1 1 1 0 Oxygen evolving enhancer protein 3 (PsbQ) APG6 PF04111.7 gi|344210871|ref|YP_004795191.1| - 0.049 12.6 5.9 0.064 12.3 4.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Cluap1 PF10234.4 gi|344210871|ref|YP_004795191.1| - 0.05 12.7 5.0 0.075 12.2 3.5 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 TMF_DNA_bd PF12329.3 gi|344210871|ref|YP_004795191.1| - 0.057 13.2 7.9 0.041 13.6 4.0 1.9 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Surfac_D-trimer PF09006.6 gi|344210871|ref|YP_004795191.1| - 0.064 12.9 2.6 1.7 8.4 0.8 2.4 1 1 1 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation TBPIP PF07106.8 gi|344210871|ref|YP_004795191.1| - 0.072 12.6 5.3 0.12 11.8 3.7 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) COG2 PF06148.6 gi|344210871|ref|YP_004795191.1| - 0.079 12.8 4.5 0.14 11.9 3.1 1.5 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 FH2 PF02181.18 gi|344210871|ref|YP_004795191.1| - 0.082 11.7 3.9 0.11 11.3 2.7 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain DUF3373 PF11853.3 gi|344210871|ref|YP_004795191.1| - 0.086 11.3 0.8 0.088 11.3 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) FlaC_arch PF05377.6 gi|344210871|ref|YP_004795191.1| - 0.12 12.2 1.1 0.35 10.8 0.7 1.9 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF2317 PF10079.4 gi|344210871|ref|YP_004795191.1| - 0.14 10.7 4.7 0.17 10.4 3.3 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF342 PF03961.8 gi|344210871|ref|YP_004795191.1| - 0.16 10.3 2.7 0.22 9.9 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Tho2 PF11262.3 gi|344210871|ref|YP_004795191.1| - 0.18 10.8 0.8 0.24 10.4 0.6 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 GBP_C PF02841.9 gi|344210871|ref|YP_004795191.1| - 0.22 10.6 6.7 0.35 10.0 4.6 1.3 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Fib_alpha PF08702.5 gi|344210871|ref|YP_004795191.1| - 0.27 11.3 6.1 0.68 10.0 4.2 1.7 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.7 gi|344210871|ref|YP_004795191.1| - 0.29 11.4 4.6 1.3 9.3 3.2 2.3 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF1423 PF07227.6 gi|344210871|ref|YP_004795191.1| - 0.31 9.6 5.9 0.37 9.4 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) VitD-bind_III PF09164.5 gi|344210871|ref|YP_004795191.1| - 0.34 10.5 1.3 0.85 9.2 0.9 1.6 1 0 0 1 1 1 0 Vitamin D binding protein, domain III TarH PF02203.10 gi|344210871|ref|YP_004795191.1| - 0.36 10.6 6.8 5.4 6.8 4.8 2.3 1 1 1 2 2 2 0 Tar ligand binding domain homologue DUF3552 PF12072.3 gi|344210871|ref|YP_004795191.1| - 0.44 9.7 13.2 0.86 8.7 9.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|344210871|ref|YP_004795191.1| - 0.52 8.1 1.8 0.56 7.9 1.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FemAB PF02388.11 gi|344210871|ref|YP_004795191.1| - 0.53 8.9 4.8 0.74 8.4 3.3 1.1 1 0 0 1 1 1 0 FemAB family Bap31 PF05529.7 gi|344210871|ref|YP_004795191.1| - 0.66 9.4 3.6 0.9 8.9 2.1 1.6 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like PhoU PF01895.14 gi|344210871|ref|YP_004795191.1| - 0.78 10.2 12.1 0.47 10.9 5.2 2.6 2 1 1 3 3 2 0 PhoU domain FUSC PF04632.7 gi|344210871|ref|YP_004795191.1| - 1.6 7.0 7.1 1.7 7.0 4.1 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family Pox_A_type_inc PF04508.7 gi|344210871|ref|YP_004795191.1| - 2.3 8.2 11.3 2.6 8.0 0.2 3.6 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat DUF4337 PF14235.1 gi|344210871|ref|YP_004795191.1| - 2.6 7.8 4.8 5.1 6.9 3.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Mnd1 PF03962.10 gi|344210871|ref|YP_004795191.1| - 3.3 7.3 11.0 5.9 6.5 7.4 1.5 1 1 0 1 1 1 0 Mnd1 family Spc24 PF08286.6 gi|344210871|ref|YP_004795191.1| - 4.2 7.1 9.0 11 5.7 6.0 1.9 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 TPR_MLP1_2 PF07926.7 gi|344210871|ref|YP_004795191.1| - 4.3 7.0 13.7 0.31 10.7 6.0 1.6 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein DivIVA PF05103.8 gi|344210871|ref|YP_004795191.1| - 5 7.1 13.5 0.11 12.5 4.3 1.9 2 0 0 2 2 1 0 DivIVA protein DUF4446 PF14584.1 gi|344210871|ref|YP_004795191.1| - 5.1 6.9 5.9 2.8 7.7 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DivIC PF04977.10 gi|344210871|ref|YP_004795191.1| - 5.4 6.5 10.0 11 5.5 0.1 2.4 1 1 1 2 2 2 0 Septum formation initiator DUF1328 PF07043.8 gi|344210872|ref|YP_004795192.1| - 1.7e-12 47.1 16.2 2.2e-12 46.7 11.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) TruB_N PF01509.13 gi|344210874|ref|YP_004795194.1| - 1e-21 77.6 0.1 1.5e-17 64.0 0.1 3.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|344210874|ref|YP_004795194.1| - 5.6e-08 32.5 0.0 1.1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|344210874|ref|YP_004795194.1| - 0.0014 18.2 0.1 0.003 17.2 0.1 1.5 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|344210875|ref|YP_004795195.1| - 9.8e-20 71.2 0.6 3.9e-18 65.9 0.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|344210875|ref|YP_004795195.1| - 5.5e-17 62.2 0.0 7.4e-17 61.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344210875|ref|YP_004795195.1| - 4.2e-15 56.6 0.5 8e-15 55.7 0.1 1.5 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|344210875|ref|YP_004795195.1| - 2.1e-10 40.6 0.2 1.2e-08 34.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|344210875|ref|YP_004795195.1| - 1.4e-07 31.4 0.5 5.1e-07 29.7 0.3 1.7 1 1 0 1 1 1 1 Shikimate kinase ADK PF00406.17 gi|344210875|ref|YP_004795195.1| - 9.5e-06 25.5 0.0 1.4e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|344210875|ref|YP_004795195.1| - 5.7e-05 23.1 0.1 8.6e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|344210875|ref|YP_004795195.1| - 0.00018 21.1 0.0 0.00027 20.6 0.0 1.2 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.1 gi|344210875|ref|YP_004795195.1| - 0.00039 20.4 0.7 0.00091 19.2 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|344210875|ref|YP_004795195.1| - 0.0015 18.6 0.0 0.0021 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|344210875|ref|YP_004795195.1| - 0.0019 18.3 0.0 0.0033 17.5 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_25 PF13481.1 gi|344210875|ref|YP_004795195.1| - 0.0019 17.6 0.2 0.0034 16.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|344210875|ref|YP_004795195.1| - 0.0019 17.6 0.6 0.0027 17.1 0.4 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA PF00004.24 gi|344210875|ref|YP_004795195.1| - 0.0023 18.1 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|344210875|ref|YP_004795195.1| - 0.0044 16.6 0.6 0.03 13.9 0.1 2.0 1 1 1 2 2 2 1 AAA domain PRK PF00485.13 gi|344210875|ref|YP_004795195.1| - 0.0072 15.9 0.1 0.033 13.7 0.0 2.1 2 1 1 3 3 3 1 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.22 gi|344210875|ref|YP_004795195.1| - 0.0093 16.2 0.0 0.011 16.0 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|344210875|ref|YP_004795195.1| - 0.013 15.7 0.0 0.018 15.4 0.0 1.3 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|344210875|ref|YP_004795195.1| - 0.014 14.6 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|344210875|ref|YP_004795195.1| - 0.014 15.1 0.0 0.027 14.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain CoaE PF01121.15 gi|344210875|ref|YP_004795195.1| - 0.014 14.8 0.1 0.086 12.2 0.0 1.9 1 1 0 2 2 2 0 Dephospho-CoA kinase AAA_29 PF13555.1 gi|344210875|ref|YP_004795195.1| - 0.021 14.3 0.2 0.049 13.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|344210875|ref|YP_004795195.1| - 0.023 14.4 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|344210875|ref|YP_004795195.1| - 0.024 13.7 0.0 0.2 10.7 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.10 gi|344210875|ref|YP_004795195.1| - 0.032 13.9 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 NTPase AAA_10 PF12846.2 gi|344210875|ref|YP_004795195.1| - 0.036 13.5 0.7 0.046 13.1 0.0 1.4 2 0 0 2 2 1 0 AAA-like domain T2SE PF00437.15 gi|344210875|ref|YP_004795195.1| - 0.037 12.9 0.1 0.062 12.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|344210875|ref|YP_004795195.1| - 0.038 13.5 0.1 0.055 12.9 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|344210875|ref|YP_004795195.1| - 0.042 13.5 0.0 0.086 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) CobU PF02283.11 gi|344210875|ref|YP_004795195.1| - 0.045 13.1 0.4 0.11 11.8 0.1 1.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Viral_helicase1 PF01443.13 gi|344210875|ref|YP_004795195.1| - 0.05 13.1 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|344210875|ref|YP_004795195.1| - 0.059 12.2 0.0 0.075 11.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Thymidylate_kin PF02223.12 gi|344210875|ref|YP_004795195.1| - 0.062 12.6 0.4 1.4 8.2 0.0 2.2 1 1 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.1 gi|344210875|ref|YP_004795195.1| - 0.072 12.6 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|344210875|ref|YP_004795195.1| - 0.093 12.6 0.0 0.18 11.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|344210875|ref|YP_004795195.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF87 PF01935.12 gi|344210875|ref|YP_004795195.1| - 0.26 11.0 1.0 1.6 8.4 0.1 2.3 2 1 1 3 3 3 0 Domain of unknown function DUF87 DUF106 PF01956.11 gi|344210876|ref|YP_004795196.1| - 3.1e-43 147.2 0.4 3.8e-43 146.9 0.3 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|344210876|ref|YP_004795196.1| - 0.00013 21.6 0.4 0.0003 20.5 0.3 1.7 1 1 1 2 2 2 1 60Kd inner membrane protein Phage_Gp23 PF10669.4 gi|344210876|ref|YP_004795196.1| - 0.0007 19.6 1.1 0.0011 19.0 0.8 1.2 1 0 0 1 1 1 1 Protein gp23 (Bacteriophage A118) DUF3512 PF12024.3 gi|344210876|ref|YP_004795196.1| - 0.23 10.7 2.5 0.36 10.0 1.1 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF3512) ADK PF00406.17 gi|344210877|ref|YP_004795197.1| - 2.8e-42 144.1 0.0 3.5e-42 143.8 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|344210877|ref|YP_004795197.1| - 3.7e-17 61.6 6.1 6.9e-17 60.8 4.2 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|344210877|ref|YP_004795197.1| - 6.7e-12 46.3 0.5 1.7e-11 45.0 0.4 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344210877|ref|YP_004795197.1| - 2e-07 30.9 0.0 3.5e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|344210877|ref|YP_004795197.1| - 3.2e-07 30.6 0.0 5.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|344210877|ref|YP_004795197.1| - 0.0033 16.5 0.0 0.0054 15.8 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus GFA PF04828.9 gi|344210877|ref|YP_004795197.1| - 0.011 15.6 0.2 0.47 10.4 0.0 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Zeta_toxin PF06414.7 gi|344210877|ref|YP_004795197.1| - 0.012 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DZR PF12773.2 gi|344210877|ref|YP_004795197.1| - 0.019 14.7 0.3 0.037 13.8 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.2 gi|344210877|ref|YP_004795197.1| - 0.023 14.6 0.5 0.6 10.1 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 AAA_19 PF13245.1 gi|344210877|ref|YP_004795197.1| - 0.026 14.2 0.0 0.069 12.9 0.0 1.7 2 0 0 2 2 2 0 Part of AAA domain AAA_28 PF13521.1 gi|344210877|ref|YP_004795197.1| - 0.041 13.8 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain HypA PF01155.14 gi|344210877|ref|YP_004795197.1| - 0.11 12.2 0.4 0.18 11.4 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|344210877|ref|YP_004795197.1| - 0.13 11.7 4.5 1.7 8.1 0.5 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain SKI PF01202.17 gi|344210877|ref|YP_004795197.1| - 0.13 12.0 0.2 0.52 10.1 0.1 1.9 1 1 0 1 1 1 0 Shikimate kinase DUF1451 PF07295.6 gi|344210877|ref|YP_004795197.1| - 0.13 11.9 0.3 0.23 11.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) SRP54 PF00448.17 gi|344210877|ref|YP_004795197.1| - 0.14 11.6 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TF_Zn_Ribbon PF08271.7 gi|344210877|ref|YP_004795197.1| - 0.19 11.0 4.1 0.42 9.9 2.9 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|344210877|ref|YP_004795197.1| - 0.71 9.6 5.9 0.72 9.6 0.3 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|344210877|ref|YP_004795197.1| - 4.7 6.9 6.5 9.8 5.9 0.6 2.4 1 1 2 3 3 3 0 Nudix N-terminal AhpC-TSA PF00578.16 gi|344210878|ref|YP_004795198.1| - 6.7e-27 93.6 0.0 7.9e-27 93.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344210878|ref|YP_004795198.1| - 4e-16 58.8 0.0 4.6e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|344210878|ref|YP_004795198.1| - 3.1e-06 27.0 0.0 3.6e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|344210878|ref|YP_004795198.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) BDV_P10 PF06515.6 gi|344210878|ref|YP_004795198.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Borna disease virus P10 protein GHMP_kinases_N PF00288.21 gi|344210879|ref|YP_004795199.1| - 2e-14 53.3 0.7 4.8e-14 52.1 0.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|344210879|ref|YP_004795199.1| - 2.5e-08 33.9 0.0 8.4e-08 32.3 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal HATPase_c PF02518.21 gi|344210880|ref|YP_004795200.1| - 1.1e-17 63.7 0.0 2e-17 62.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|344210880|ref|YP_004795200.1| - 2.7e-08 33.6 0.0 6.9e-08 32.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|344210880|ref|YP_004795200.1| - 3.7e-05 23.4 0.8 0.0005 19.8 0.1 3.0 2 1 1 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|344210880|ref|YP_004795200.1| - 0.00011 21.8 0.0 0.00022 20.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344210880|ref|YP_004795200.1| - 0.00024 21.0 1.3 0.04 13.9 0.9 2.8 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|344210880|ref|YP_004795200.1| - 0.0034 17.1 0.1 0.029 14.1 0.0 2.4 1 1 1 2 2 2 1 PAS fold DUF1664 PF07889.7 gi|344210880|ref|YP_004795200.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF1098 PF06497.6 gi|344210880|ref|YP_004795200.1| - 0.15 12.0 2.3 0.19 11.7 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1098) Amino_oxidase PF01593.19 gi|344210881|ref|YP_004795201.1| - 3.5e-21 75.7 1.2 6e-20 71.7 0.8 2.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|344210881|ref|YP_004795201.1| - 3.3e-15 55.8 0.2 9.9e-15 54.3 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|344210881|ref|YP_004795201.1| - 2.8e-13 49.5 1.1 1.4e-07 30.7 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344210881|ref|YP_004795201.1| - 5.6e-06 25.4 1.7 1e-05 24.5 1.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|344210881|ref|YP_004795201.1| - 1.6e-05 24.8 0.2 0.00017 21.5 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344210881|ref|YP_004795201.1| - 0.00011 22.4 0.2 0.0021 18.4 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344210881|ref|YP_004795201.1| - 0.00066 19.4 0.7 0.035 13.8 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|344210881|ref|YP_004795201.1| - 0.00069 18.8 0.2 0.0028 16.8 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344210881|ref|YP_004795201.1| - 0.00073 18.7 0.6 0.0056 15.8 0.3 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|344210881|ref|YP_004795201.1| - 0.00085 18.2 0.1 0.0016 17.3 0.0 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|344210881|ref|YP_004795201.1| - 0.0014 17.2 1.2 0.0016 16.9 0.3 1.5 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|344210881|ref|YP_004795201.1| - 0.0028 16.6 0.0 0.07 12.0 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|344210881|ref|YP_004795201.1| - 0.0036 17.3 0.8 0.0085 16.1 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|344210881|ref|YP_004795201.1| - 0.008 14.4 0.0 0.011 13.9 0.0 1.2 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.14 gi|344210881|ref|YP_004795201.1| - 0.018 14.0 0.4 0.035 13.1 0.3 1.4 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.13 gi|344210881|ref|YP_004795201.1| - 0.03 13.9 0.4 0.049 13.2 0.1 1.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|344210881|ref|YP_004795201.1| - 0.068 13.6 0.7 1.5 9.2 0.2 2.6 2 1 1 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|344210881|ref|YP_004795201.1| - 0.074 13.0 1.2 0.22 11.5 0.0 2.0 2 0 0 2 2 2 0 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|344210881|ref|YP_004795201.1| - 0.13 11.6 0.6 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|344210881|ref|YP_004795201.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|344210881|ref|YP_004795201.1| - 0.17 11.5 0.6 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_2 PF07992.9 gi|344210883|ref|YP_004795203.1| - 2.5e-32 112.4 0.2 3.2e-32 112.0 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344210883|ref|YP_004795203.1| - 5e-10 39.6 0.3 3.2e-06 27.4 0.0 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|344210883|ref|YP_004795203.1| - 0.00014 20.9 3.8 1.1 8.0 0.0 3.6 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|344210883|ref|YP_004795203.1| - 0.00034 19.2 0.0 0.085 11.3 0.0 2.6 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|344210883|ref|YP_004795203.1| - 0.0021 18.1 3.2 0.0068 16.4 0.7 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|344210883|ref|YP_004795203.1| - 0.0052 16.7 1.6 0.27 11.2 0.0 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|344210883|ref|YP_004795203.1| - 0.023 14.4 3.5 0.66 9.7 0.0 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Reductase_C PF14759.1 gi|344210883|ref|YP_004795203.1| - 0.024 14.8 0.0 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 Reductase C-terminal Lycopene_cycl PF05834.7 gi|344210883|ref|YP_004795203.1| - 0.043 12.7 0.8 0.98 8.2 0.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|344210883|ref|YP_004795203.1| - 0.31 9.8 7.5 1.4 7.7 0.1 3.6 3 1 0 4 4 4 0 FAD binding domain UPF0259 PF06790.6 gi|344210886|ref|YP_004795206.1| - 0.012 15.1 12.3 0.018 14.5 8.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0259) GPDPase_memb PF10110.4 gi|344210886|ref|YP_004795206.1| - 0.034 13.5 1.4 0.078 12.3 1.0 1.6 1 0 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF4191 PF13829.1 gi|344210886|ref|YP_004795206.1| - 4.8 6.2 10.3 5.6 6.0 2.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF1129 PF06570.6 gi|344210886|ref|YP_004795206.1| - 8.9 5.5 11.6 5.6 6.2 6.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) ETF PF01012.16 gi|344210887|ref|YP_004795207.1| - 0.04 13.6 0.0 0.13 12.0 0.0 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein domain HTH_32 PF13565.1 gi|344210889|ref|YP_004795209.1| - 0.075 13.8 0.0 0.1 13.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain CPSase_L_D2 PF02786.12 gi|344210890|ref|YP_004795210.1| - 1.4e-93 312.0 0.1 6.3e-58 195.5 0.0 2.6 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|344210890|ref|YP_004795210.1| - 2.1e-44 150.1 0.2 4.2e-22 78.3 0.0 2.9 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|344210890|ref|YP_004795210.1| - 3.8e-30 105.0 0.6 1.6e-17 63.8 0.0 3.2 3 1 0 3 3 3 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|344210890|ref|YP_004795210.1| - 1.6e-21 76.4 0.0 3.3e-13 49.0 0.0 3.7 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D3 PF02787.14 gi|344210890|ref|YP_004795210.1| - 5.8e-21 74.5 0.1 6.4e-20 71.1 0.1 2.3 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.17 gi|344210890|ref|YP_004795210.1| - 3.3e-12 46.1 0.0 3.4e-07 29.7 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|344210890|ref|YP_004795210.1| - 1e-10 41.3 0.0 6.7e-07 28.8 0.0 2.8 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|344210890|ref|YP_004795210.1| - 1.8e-09 37.6 0.3 0.00049 19.9 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|344210890|ref|YP_004795210.1| - 0.0038 16.7 0.0 0.032 13.7 0.0 2.5 2 0 0 2 2 2 1 RimK-like ATP-grasp domain Glyco_transf_9 PF01075.12 gi|344210890|ref|YP_004795210.1| - 0.19 10.9 0.0 21 4.2 0.0 2.9 3 0 0 3 3 3 0 Glycosyltransferase family 9 (heptosyltransferase) PAS_4 PF08448.5 gi|344210891|ref|YP_004795211.1| - 7.6e-52 173.9 20.0 6.6e-22 77.6 0.1 5.9 6 0 0 6 6 6 4 PAS fold PAS_9 PF13426.1 gi|344210891|ref|YP_004795211.1| - 4.2e-37 126.6 5.0 8.9e-11 42.0 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.6 gi|344210891|ref|YP_004795211.1| - 1.2e-32 111.8 4.3 7.8e-25 86.8 0.2 4.9 4 0 0 4 4 4 2 PAS fold PAS PF00989.19 gi|344210891|ref|YP_004795211.1| - 1.5e-25 89.1 3.2 1.9e-09 37.2 0.0 5.1 4 1 0 4 4 4 4 PAS fold Response_reg PF00072.19 gi|344210891|ref|YP_004795211.1| - 8.4e-20 70.8 0.0 3.4e-19 68.9 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344210891|ref|YP_004795211.1| - 3.4e-19 68.6 0.1 7.2e-19 67.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|344210891|ref|YP_004795211.1| - 2.2e-18 65.3 0.1 0.0002 21.0 0.0 5.0 4 0 0 4 4 4 3 PAS domain HisKA PF00512.20 gi|344210891|ref|YP_004795211.1| - 6.8e-14 51.6 1.0 4.5e-13 48.9 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|344210891|ref|YP_004795211.1| - 3.5e-08 33.6 0.0 0.00015 21.9 0.0 3.3 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|344210891|ref|YP_004795211.1| - 9.2e-07 29.4 6.7 2.5e-06 28.0 0.9 3.5 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|344210891|ref|YP_004795211.1| - 1.4e-06 28.4 0.5 1.2e-05 25.4 0.2 2.7 2 0 0 2 2 2 1 GAF domain OKR_DC_1_N PF03709.10 gi|344210891|ref|YP_004795211.1| - 3.5e-05 23.8 2.3 8.4e-05 22.6 0.0 2.9 4 0 0 4 4 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_11 PF14598.1 gi|344210891|ref|YP_004795211.1| - 0.0001 22.2 0.0 0.011 15.6 0.0 3.2 3 0 0 3 3 3 1 PAS domain GAF PF01590.21 gi|344210891|ref|YP_004795211.1| - 0.00011 22.3 0.5 0.00037 20.6 0.3 2.0 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|344210891|ref|YP_004795211.1| - 0.0024 17.5 0.0 0.0058 16.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|344210891|ref|YP_004795211.1| - 0.0046 16.9 3.6 0.084 12.8 0.1 4.4 4 2 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.1 gi|344210891|ref|YP_004795211.1| - 0.041 13.5 0.1 8.7 6.1 0.1 2.8 2 1 0 2 2 2 0 GHKL domain Methyltransf_24 PF13578.1 gi|344210891|ref|YP_004795211.1| - 0.051 14.4 1.9 0.48 11.2 0.0 3.5 3 0 0 3 3 3 0 Methyltransferase domain bPH_3 PF14470.1 gi|344210892|ref|YP_004795212.1| - 0.021 15.0 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial PH domain CPSase_sm_chain PF00988.17 gi|344210893|ref|YP_004795213.1| - 9.5e-35 118.9 0.0 3.2e-34 117.2 0.0 1.9 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|344210893|ref|YP_004795213.1| - 6.3e-34 117.1 0.0 8.5e-34 116.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|344210893|ref|YP_004795213.1| - 1.3e-06 28.0 0.1 0.00031 20.2 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|344210893|ref|YP_004795213.1| - 0.0061 16.0 0.0 0.013 14.9 0.0 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family Pro-kuma_activ PF09286.6 gi|344210893|ref|YP_004795213.1| - 0.0092 16.0 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain HTH_AsnC-type PF13404.1 gi|344210894|ref|YP_004795214.1| - 1.9e-18 65.7 1.5 1.7e-17 62.6 0.8 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|344210894|ref|YP_004795214.1| - 5.2e-17 60.9 0.1 1.1e-16 59.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|344210894|ref|YP_004795214.1| - 3.4e-10 39.4 1.0 5.5e-10 38.8 0.7 1.3 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|344210894|ref|YP_004795214.1| - 2.7e-06 27.0 0.0 5.4e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344210894|ref|YP_004795214.1| - 1e-05 25.1 0.2 1.9e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|344210894|ref|YP_004795214.1| - 0.00013 21.3 0.0 0.00025 20.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.17 gi|344210894|ref|YP_004795214.1| - 0.00031 20.3 0.0 0.00058 19.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|344210894|ref|YP_004795214.1| - 0.00033 20.1 0.0 0.00059 19.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|344210894|ref|YP_004795214.1| - 0.00036 20.8 0.1 0.00079 19.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|344210894|ref|YP_004795214.1| - 0.00047 19.7 0.0 0.00072 19.1 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|344210894|ref|YP_004795214.1| - 0.00062 19.3 0.1 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.11 gi|344210894|ref|YP_004795214.1| - 0.00089 18.5 0.2 0.0015 17.7 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|344210894|ref|YP_004795214.1| - 0.0012 18.0 1.3 0.0019 17.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|344210894|ref|YP_004795214.1| - 0.0014 18.1 0.2 0.0026 17.2 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain NapD PF03927.8 gi|344210894|ref|YP_004795214.1| - 0.003 17.3 1.1 0.0055 16.5 0.8 1.4 1 0 0 1 1 1 1 NapD protein TrmB PF01978.14 gi|344210894|ref|YP_004795214.1| - 0.0032 17.1 0.1 0.012 15.2 0.1 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|344210894|ref|YP_004795214.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.16 gi|344210894|ref|YP_004795214.1| - 0.015 14.7 0.1 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.7 gi|344210894|ref|YP_004795214.1| - 0.02 14.8 0.1 0.032 14.2 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein DUF746 PF05344.6 gi|344210894|ref|YP_004795214.1| - 0.02 14.3 0.1 0.092 12.2 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_38 PF13936.1 gi|344210894|ref|YP_004795214.1| - 0.038 13.5 0.0 0.071 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|344210894|ref|YP_004795214.1| - 0.039 14.0 0.0 0.059 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix GYD PF08734.6 gi|344210894|ref|YP_004795214.1| - 0.04 13.6 0.6 0.15 11.7 0.0 2.1 2 1 1 3 3 3 0 GYD domain HTH_28 PF13518.1 gi|344210894|ref|YP_004795214.1| - 0.042 13.8 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|344210894|ref|YP_004795214.1| - 0.059 13.5 0.1 0.15 12.2 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein Penicillinase_R PF03965.11 gi|344210894|ref|YP_004795214.1| - 0.074 13.1 0.1 0.081 13.0 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor GerE PF00196.14 gi|344210894|ref|YP_004795214.1| - 0.079 12.2 0.0 0.19 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|344210894|ref|YP_004795214.1| - 0.089 12.3 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_5 PF01022.15 gi|344210894|ref|YP_004795214.1| - 0.097 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Mga PF08280.6 gi|344210894|ref|YP_004795214.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF4191 PF13829.1 gi|344210894|ref|YP_004795214.1| - 0.16 11.0 1.2 0.72 8.9 0.3 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4191) YadA_stalk PF05662.9 gi|344210894|ref|YP_004795214.1| - 0.59 9.9 2.7 1.7 8.5 1.8 1.8 1 0 0 1 1 1 0 Coiled stalk of trimeric autotransporter adhesin MS_channel PF00924.13 gi|344210895|ref|YP_004795215.1| - 2.7e-38 131.3 0.5 3.6e-38 130.9 0.4 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel SseC PF04888.7 gi|344210895|ref|YP_004795215.1| - 0.88 8.8 8.8 1.3 8.2 6.1 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family UPF0118 PF01594.11 gi|344210896|ref|YP_004795216.1| - 3.3e-25 88.7 30.4 4.3e-25 88.3 21.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 HATPase_c PF02518.21 gi|344210897|ref|YP_004795217.1| - 4.7e-22 77.8 0.1 9e-22 76.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|344210897|ref|YP_004795217.1| - 2.3e-08 33.8 1.0 3.9e-08 33.1 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|344210897|ref|YP_004795217.1| - 6.9e-05 23.3 0.3 0.00024 21.6 0.1 1.9 2 0 0 2 2 2 1 GAF domain SPOB_a PF14689.1 gi|344210897|ref|YP_004795217.1| - 9.1e-05 21.9 0.3 0.00019 20.9 0.2 1.5 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.1 gi|344210897|ref|YP_004795217.1| - 0.00039 20.0 0.0 0.00071 19.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|344210897|ref|YP_004795217.1| - 0.012 15.5 0.7 0.012 15.5 0.5 2.1 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain DEAD PF00270.24 gi|344210898|ref|YP_004795218.1| - 5.3e-23 81.3 0.0 7.8e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|344210898|ref|YP_004795218.1| - 3.8e-18 65.8 0.0 2e-17 63.5 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|344210898|ref|YP_004795218.1| - 8.3e-08 31.9 0.0 8e-07 28.8 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF4136 PF13590.1 gi|344210898|ref|YP_004795218.1| - 0.12 12.4 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4136) ABC_tran PF00005.22 gi|344210899|ref|YP_004795219.1| - 2.8e-31 108.6 0.0 2.9e-30 105.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|344210899|ref|YP_004795219.1| - 6.5e-07 29.5 0.0 0.0042 17.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344210899|ref|YP_004795219.1| - 2.1e-05 23.8 0.1 0.00083 18.6 0.1 2.7 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|344210899|ref|YP_004795219.1| - 6.7e-05 22.0 0.1 0.00056 19.0 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_29 PF13555.1 gi|344210899|ref|YP_004795219.1| - 0.00015 21.2 0.4 0.031 13.7 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|344210899|ref|YP_004795219.1| - 0.00033 19.8 0.0 0.14 11.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344210899|ref|YP_004795219.1| - 0.0016 18.5 0.6 0.0077 16.2 0.3 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|344210899|ref|YP_004795219.1| - 0.002 17.7 5.1 0.022 14.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|344210899|ref|YP_004795219.1| - 0.0023 18.0 0.3 0.045 13.9 0.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|344210899|ref|YP_004795219.1| - 0.0043 17.3 0.3 0.008 16.5 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|344210899|ref|YP_004795219.1| - 0.013 15.4 0.9 0.048 13.5 0.3 2.3 2 1 1 3 3 3 0 AAA domain AAA PF00004.24 gi|344210899|ref|YP_004795219.1| - 0.029 14.5 0.0 0.077 13.2 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|344210899|ref|YP_004795219.1| - 0.04 13.4 0.2 0.084 12.4 0.1 1.5 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|344210899|ref|YP_004795219.1| - 0.07 12.7 0.3 0.24 11.0 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 F420_oxidored PF03807.12 gi|344210899|ref|YP_004795219.1| - 0.1 13.0 1.3 0.29 11.6 0.9 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent SbcCD_C PF13558.1 gi|344210899|ref|YP_004795219.1| - 0.17 11.8 2.8 0.61 10.0 0.1 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|344210899|ref|YP_004795219.1| - 0.3 10.0 0.0 1.8 7.5 0.0 2.1 3 0 0 3 3 3 0 AAA ATPase domain NAD_binding_7 PF13241.1 gi|344210899|ref|YP_004795219.1| - 1.9 8.7 8.2 3.1 8.0 2.3 3.0 2 2 1 3 3 3 0 Putative NAD(P)-binding FecCD PF01032.13 gi|344210900|ref|YP_004795220.1| - 6.9e-89 297.7 33.8 1e-88 297.1 23.3 1.4 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|344210900|ref|YP_004795220.1| - 7.6e-07 28.6 13.2 7.6e-07 28.6 9.2 1.9 1 1 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.13 gi|344210901|ref|YP_004795221.1| - 4.1e-27 94.8 0.7 5.5e-27 94.4 0.5 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Gram_pos_anchor PF00746.16 gi|344210901|ref|YP_004795221.1| - 0.1 12.4 0.7 0.24 11.2 0.5 1.7 1 0 0 1 1 1 0 Gram positive anchor 5-FTHF_cyc-lig PF01812.15 gi|344210902|ref|YP_004795222.1| - 4.8e-28 98.1 0.0 7.4e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family HATPase_c PF02518.21 gi|344210903|ref|YP_004795223.1| - 3.7e-20 71.7 0.4 9.2e-20 70.4 0.3 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|344210903|ref|YP_004795223.1| - 1e-14 54.4 0.0 2.5e-14 53.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|344210903|ref|YP_004795223.1| - 2.5e-12 46.5 0.2 2.5e-12 46.5 0.1 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|344210903|ref|YP_004795223.1| - 2.9e-11 43.3 0.4 1.8e-10 40.8 0.0 2.6 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|344210903|ref|YP_004795223.1| - 9.5e-10 38.6 0.0 3.4e-09 36.8 0.0 2.0 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|344210903|ref|YP_004795223.1| - 3.9e-09 36.7 0.0 1.1e-08 35.3 0.0 1.8 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|344210903|ref|YP_004795223.1| - 2.4e-07 31.0 0.0 2.5e-06 27.7 0.0 2.6 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.1 gi|344210903|ref|YP_004795223.1| - 1.3e-05 25.7 0.0 5.1e-05 23.7 0.0 2.0 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|344210903|ref|YP_004795223.1| - 9.6e-05 22.1 0.3 0.00063 19.5 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain OKR_DC_1_N PF03709.10 gi|344210903|ref|YP_004795223.1| - 0.0013 18.7 0.1 0.0032 17.5 0.0 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|344210903|ref|YP_004795223.1| - 0.026 14.1 0.1 0.058 13.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|344210903|ref|YP_004795223.1| - 0.036 13.9 0.3 0.13 12.1 0.0 2.1 2 0 0 2 2 2 0 PAS domain PAS PF00989.19 gi|344210903|ref|YP_004795223.1| - 0.075 12.8 0.1 0.37 10.5 0.0 2.2 2 0 0 2 2 2 0 PAS fold KH_3 PF13014.1 gi|344210903|ref|YP_004795223.1| - 0.12 12.0 0.0 0.42 10.3 0.0 1.9 1 0 0 1 1 1 0 KH domain Pyr_redox_2 PF07992.9 gi|344210904|ref|YP_004795224.1| - 1.1e-22 80.8 0.2 1.8e-22 80.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|344210904|ref|YP_004795224.1| - 5.4e-15 55.3 0.0 1.4e-14 54.0 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|344210904|ref|YP_004795224.1| - 4.7e-10 39.8 0.8 7.6e-08 32.6 0.3 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344210904|ref|YP_004795224.1| - 5.3e-08 33.1 1.9 9.5e-08 32.3 0.0 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|344210904|ref|YP_004795224.1| - 0.00014 21.8 0.8 0.044 13.7 0.0 3.3 3 0 0 3 3 3 1 TrkA-N domain Saccharop_dh PF03435.13 gi|344210904|ref|YP_004795224.1| - 0.00021 20.3 0.1 0.42 9.5 0.1 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase NAD_binding_9 PF13454.1 gi|344210904|ref|YP_004795224.1| - 0.00075 19.2 1.6 0.62 9.8 0.9 3.2 2 1 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|344210904|ref|YP_004795224.1| - 0.0037 16.2 0.1 2.6 6.8 0.0 2.5 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|344210904|ref|YP_004795224.1| - 0.0096 14.8 1.7 0.15 10.8 0.0 2.4 2 1 0 2 2 2 1 Glucose inhibited division protein A ThiF PF00899.16 gi|344210904|ref|YP_004795224.1| - 0.012 15.4 2.3 0.34 10.7 0.0 2.8 3 0 0 3 3 3 0 ThiF family NAD_binding_10 PF13460.1 gi|344210904|ref|YP_004795224.1| - 0.02 14.9 0.5 8.8 6.2 0.1 3.5 4 0 0 4 4 4 0 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|344210904|ref|YP_004795224.1| - 0.065 13.5 1.0 29 4.9 0.1 3.3 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain DAO PF01266.19 gi|344210904|ref|YP_004795224.1| - 0.45 9.3 6.5 1.8 7.3 1.1 2.9 2 1 0 3 3 3 0 FAD dependent oxidoreductase MMPL PF03176.10 gi|344210905|ref|YP_004795225.1| - 2.7e-26 92.0 25.4 5.8e-15 54.8 1.0 2.7 3 0 0 3 3 3 2 MMPL family Patched PF02460.13 gi|344210905|ref|YP_004795225.1| - 8.5e-16 57.0 21.1 6e-10 37.7 6.6 2.1 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.3 gi|344210905|ref|YP_004795225.1| - 6.3e-15 54.9 10.8 4.1e-08 32.8 2.0 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.11 gi|344210905|ref|YP_004795225.1| - 1.5e-05 24.2 22.1 0.0029 16.8 4.7 2.4 2 0 0 2 2 2 2 Protein export membrane protein CARDB PF07705.6 gi|344210906|ref|YP_004795226.1| - 9e-19 67.4 30.4 0.0014 18.6 0.7 6.2 5 1 1 6 6 6 5 CARDB NPCBM_assoc PF10633.4 gi|344210906|ref|YP_004795226.1| - 7.3e-12 45.1 28.2 0.0026 17.7 0.3 8.2 7 2 0 7 7 7 5 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.17 gi|344210906|ref|YP_004795226.1| - 2.7e-09 36.9 0.1 0.15 12.1 0.0 4.6 4 0 0 4 4 4 3 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.13 gi|344210906|ref|YP_004795226.1| - 6.2e-07 29.3 28.7 0.00026 20.9 3.0 5.8 6 0 0 6 6 6 3 Domain of unknown function DUF11 Fn3-like PF14310.1 gi|344210906|ref|YP_004795226.1| - 0.00024 20.9 8.9 1.1 9.2 0.0 6.9 8 0 0 8 8 8 1 Fibronectin type III-like domain Arrestin_C PF02752.17 gi|344210906|ref|YP_004795226.1| - 0.0089 16.1 0.1 22 5.1 0.0 4.2 3 2 0 4 4 4 0 Arrestin (or S-antigen), C-terminal domain DUF2393 PF09624.5 gi|344210906|ref|YP_004795226.1| - 0.09 12.3 5.3 1.7 8.1 0.0 4.3 5 0 0 5 5 5 0 Protein of unknown function (DUF2393) PHTB1_C PF14728.1 gi|344210906|ref|YP_004795226.1| - 0.25 10.0 0.2 8.1 5.1 0.0 2.7 3 0 0 3 3 3 0 PTHB1 C-terminus TetR_N PF00440.18 gi|344210907|ref|YP_004795227.1| - 4.3e-16 58.2 0.2 7.2e-16 57.5 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|344210907|ref|YP_004795227.1| - 1.4e-11 44.4 0.0 2.8e-11 43.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional repressor HTH_23 PF13384.1 gi|344210907|ref|YP_004795227.1| - 0.019 14.5 0.0 0.058 13.0 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain UPF0122 PF04297.9 gi|344210907|ref|YP_004795227.1| - 0.02 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_7 PF02796.10 gi|344210907|ref|YP_004795227.1| - 0.029 14.2 0.0 0.064 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_20 PF12840.2 gi|344210907|ref|YP_004795227.1| - 0.046 13.5 0.0 0.092 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|344210907|ref|YP_004795227.1| - 0.059 12.9 0.2 0.37 10.3 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Mga PF05043.8 gi|344210907|ref|YP_004795227.1| - 0.067 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_40 PF14493.1 gi|344210907|ref|YP_004795227.1| - 0.074 13.2 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_C_4 PF08359.6 gi|344210907|ref|YP_004795227.1| - 0.096 12.6 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region TetR_C_5 PF08360.6 gi|344210907|ref|YP_004795227.1| - 0.15 12.0 0.1 0.31 10.9 0.0 1.5 2 0 0 2 2 2 0 QacR-like protein, C-terminal region HalX PF08663.5 gi|344210908|ref|YP_004795228.1| - 1.1e-19 70.1 10.2 1.9e-19 69.4 5.8 2.3 3 0 0 3 3 3 1 HalX domain Response_reg PF00072.19 gi|344210908|ref|YP_004795228.1| - 4.8e-15 55.5 0.2 7e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain IncA PF04156.9 gi|344210908|ref|YP_004795228.1| - 0.072 12.6 1.0 0.086 12.4 0.7 1.2 1 0 0 1 1 1 0 IncA protein DUF2065 PF09838.4 gi|344210910|ref|YP_004795230.1| - 0.002 17.8 4.8 0.0085 15.7 0.7 2.3 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2065) DUF3098 PF11297.3 gi|344210910|ref|YP_004795230.1| - 0.0042 16.7 0.3 0.24 11.1 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3098) NAD_kinase PF01513.16 gi|344210911|ref|YP_004795231.1| - 9e-41 139.5 0.1 1.1e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|344210911|ref|YP_004795231.1| - 0.028 13.8 0.1 0.059 12.8 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain KaiC PF06745.8 gi|344210912|ref|YP_004795232.1| - 3.3e-56 189.9 0.1 3.9e-56 189.7 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|344210912|ref|YP_004795232.1| - 4.2e-09 36.0 0.0 6e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|344210912|ref|YP_004795232.1| - 2.7e-06 26.0 0.1 5.2e-06 25.0 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|344210912|ref|YP_004795232.1| - 0.0001 21.2 0.0 0.0047 15.8 0.0 2.2 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain RecA PF00154.16 gi|344210912|ref|YP_004795232.1| - 0.0012 17.9 0.0 0.0019 17.2 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.1 gi|344210912|ref|YP_004795232.1| - 0.0058 15.7 0.0 0.0092 15.0 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.12 gi|344210912|ref|YP_004795232.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.1 gi|344210912|ref|YP_004795232.1| - 0.043 13.3 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|344210912|ref|YP_004795232.1| - 0.074 12.9 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|344210912|ref|YP_004795232.1| - 0.086 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|344210912|ref|YP_004795232.1| - 0.13 12.1 0.2 0.23 11.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|344210912|ref|YP_004795232.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein DUF4013 PF13197.1 gi|344210913|ref|YP_004795233.1| - 4.6e-41 139.9 21.1 4.6e-41 139.9 14.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) EI24 PF07264.6 gi|344210913|ref|YP_004795233.1| - 0.0028 17.1 2.6 0.0028 17.1 1.8 2.7 1 1 1 2 2 2 1 Etoposide-induced protein 2.4 (EI24) Colicin PF01024.14 gi|344210913|ref|YP_004795233.1| - 0.39 10.2 1.6 0.65 9.5 1.1 1.4 1 0 0 1 1 1 0 Colicin pore forming domain Usp PF00582.21 gi|344210914|ref|YP_004795234.1| - 2.9e-11 43.7 0.2 3.6e-11 43.4 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|344210914|ref|YP_004795234.1| - 0.0068 16.1 0.0 0.48 10.1 0.0 2.1 1 1 0 1 1 1 1 Electron transfer flavoprotein domain Usp PF00582.21 gi|344210915|ref|YP_004795235.1| - 6.6e-36 123.5 2.9 7.5e-36 123.3 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AAA_10 PF12846.2 gi|344210916|ref|YP_004795236.1| - 3.4e-21 75.9 0.3 2.2e-20 73.3 0.2 1.9 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|344210916|ref|YP_004795236.1| - 1.7e-07 31.3 0.0 3.4e-07 30.3 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|344210916|ref|YP_004795236.1| - 3.5e-07 28.9 0.2 0.00043 18.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|344210916|ref|YP_004795236.1| - 0.00028 20.4 0.0 0.045 13.2 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|344210916|ref|YP_004795236.1| - 0.018 15.1 0.0 0.084 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|344210916|ref|YP_004795236.1| - 0.051 12.1 0.0 0.073 11.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|344210916|ref|YP_004795236.1| - 0.055 13.2 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|344210916|ref|YP_004795236.1| - 0.089 11.6 0.1 0.16 10.8 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF4258 PF14076.1 gi|344210916|ref|YP_004795236.1| - 0.23 11.4 0.7 0.8 9.7 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) Exo_endo_phos PF03372.18 gi|344210917|ref|YP_004795237.1| - 1.4e-12 48.0 4.0 1.9e-12 47.6 2.8 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|344210917|ref|YP_004795237.1| - 2.3e-07 30.4 0.0 4.9e-07 29.3 0.0 1.5 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase HTH_20 PF12840.2 gi|344210919|ref|YP_004795239.1| - 1.1e-10 41.1 0.3 1.8e-10 40.4 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344210919|ref|YP_004795239.1| - 3.5e-08 32.8 0.4 2e-07 30.5 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|344210919|ref|YP_004795239.1| - 1.1e-06 28.2 0.0 1.4e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344210919|ref|YP_004795239.1| - 1.3e-06 27.9 0.0 2.5e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|344210919|ref|YP_004795239.1| - 1.9e-06 27.1 0.0 2.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344210919|ref|YP_004795239.1| - 8e-06 25.4 0.1 1.3e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 MarR family FUR PF01475.14 gi|344210919|ref|YP_004795239.1| - 1.6e-05 24.8 0.0 1.9e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_11 PF08279.7 gi|344210919|ref|YP_004795239.1| - 0.00015 21.3 0.0 0.00023 20.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|344210919|ref|YP_004795239.1| - 0.0002 20.9 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|344210919|ref|YP_004795239.1| - 0.0022 17.7 0.0 0.0033 17.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family B-block_TFIIIC PF04182.7 gi|344210919|ref|YP_004795239.1| - 0.0096 15.7 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_AsnC-type PF13404.1 gi|344210919|ref|YP_004795239.1| - 0.03 13.8 0.1 0.061 12.8 0.0 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|344210919|ref|YP_004795239.1| - 0.1 12.9 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|344210919|ref|YP_004795239.1| - 0.11 12.5 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r3 PF04539.11 gi|344210919|ref|YP_004795239.1| - 0.15 11.9 0.2 0.31 10.9 0.0 1.6 2 0 0 2 2 2 0 Sigma-70 region 3 DUF998 PF06197.8 gi|344210920|ref|YP_004795240.1| - 0.018 14.3 10.3 0.02 14.2 7.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF420 PF04238.7 gi|344210920|ref|YP_004795240.1| - 0.066 13.1 1.5 0.081 12.8 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF420) MNHE PF01899.11 gi|344210920|ref|YP_004795240.1| - 0.07 12.7 5.3 0.055 13.0 3.0 1.3 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit DUF423 PF04241.10 gi|344210920|ref|YP_004795240.1| - 0.11 12.3 2.0 0.16 11.9 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF423) DUF1129 PF06570.6 gi|344210920|ref|YP_004795240.1| - 0.75 9.0 2.8 0.91 8.7 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2484 PF10658.4 gi|344210920|ref|YP_004795240.1| - 1.3 9.2 6.7 0.21 11.7 0.9 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2484) SdpI PF13630.1 gi|344210920|ref|YP_004795240.1| - 2.3 8.0 7.3 0.3 10.7 0.5 2.0 1 1 1 2 2 2 0 SdpI/YhfL protein family MARVEL PF01284.18 gi|344210920|ref|YP_004795240.1| - 2.7 7.8 6.5 3.4 7.4 4.5 1.1 1 0 0 1 1 1 0 Membrane-associating domain DUF202 PF02656.10 gi|344210920|ref|YP_004795240.1| - 3.2 8.0 8.8 10 6.4 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF2976 PF11190.3 gi|344210920|ref|YP_004795240.1| - 4.6 6.8 9.4 0.61 9.6 0.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2976) DUF4131 PF13567.1 gi|344210920|ref|YP_004795240.1| - 8.1 5.8 8.2 1.2 8.5 2.9 1.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) NurA PF09376.5 gi|344210921|ref|YP_004795241.1| - 4.6e-33 114.7 0.0 5.8e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 NurA domain iPGM_N PF06415.8 gi|344210923|ref|YP_004795243.1| - 1.8e-75 253.1 0.1 2.6e-75 252.6 0.0 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|344210923|ref|YP_004795243.1| - 8.6e-75 251.3 0.3 9.8e-75 251.1 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|344210923|ref|YP_004795243.1| - 4.7e-06 26.1 0.1 1e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PTS_2-RNA PF01885.11 gi|344210924|ref|YP_004795244.1| - 3.5e-39 134.0 0.0 4.3e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Acetyltransf_1 PF00583.19 gi|344210925|ref|YP_004795245.1| - 2.2e-11 43.6 0.0 3.9e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|344210925|ref|YP_004795245.1| - 2.2e-08 34.1 0.0 2.6e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344210925|ref|YP_004795245.1| - 7.3e-07 29.3 0.0 1.2e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344210925|ref|YP_004795245.1| - 6.1e-06 26.3 0.0 1.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.2 gi|344210925|ref|YP_004795245.1| - 0.00018 21.2 0.0 0.00043 20.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Acetyltransf_3 PF13302.1 gi|344210925|ref|YP_004795245.1| - 0.00047 20.3 0.0 0.00073 19.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|344210925|ref|YP_004795245.1| - 0.0017 18.3 0.8 0.0038 17.1 0.4 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MarR_2 PF12802.2 gi|344210925|ref|YP_004795245.1| - 0.024 14.3 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 MarR family Acetyltransf_9 PF13527.1 gi|344210925|ref|YP_004795245.1| - 0.037 13.8 0.0 0.12 12.2 0.0 1.9 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Pyridox_ox_2 PF12900.2 gi|344210926|ref|YP_004795246.1| - 7.9e-20 71.1 0.1 8.8e-20 70.9 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|344210926|ref|YP_004795246.1| - 0.0003 20.7 0.0 0.0004 20.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase QRPTase_C PF01729.14 gi|344210927|ref|YP_004795247.1| - 1e-56 191.1 1.0 1.3e-56 190.7 0.7 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|344210927|ref|YP_004795247.1| - 1.5e-20 72.7 0.0 2.6e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|344210927|ref|YP_004795247.1| - 0.11 11.6 0.2 0.43 9.6 0.0 2.1 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Chlorosome_CsmC PF11098.3 gi|344210927|ref|YP_004795247.1| - 1.8 8.2 7.0 0.73 9.5 2.3 2.2 2 1 0 2 2 2 0 Chlorosome envelope protein C FAD_binding_2 PF00890.19 gi|344210928|ref|YP_004795248.1| - 2.6e-81 273.5 4.4 3.3e-81 273.2 3.0 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|344210928|ref|YP_004795248.1| - 8.4e-13 47.9 0.1 1.1e-08 34.4 0.1 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344210928|ref|YP_004795248.1| - 2e-09 37.6 4.2 1.2e-06 28.5 3.1 3.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344210928|ref|YP_004795248.1| - 4.2e-07 29.3 4.9 1.2e-06 27.9 3.1 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|344210928|ref|YP_004795248.1| - 8e-07 28.2 0.2 8.9e-05 21.5 0.4 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Succ_DH_flav_C PF02910.15 gi|344210928|ref|YP_004795248.1| - 1.3e-06 28.3 0.3 2.5e-06 27.3 0.2 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.1 gi|344210928|ref|YP_004795248.1| - 8.6e-05 22.4 0.4 0.00021 21.2 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344210928|ref|YP_004795248.1| - 0.0006 18.3 0.2 0.0058 15.1 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|344210928|ref|YP_004795248.1| - 0.0067 15.5 0.1 0.013 14.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|344210928|ref|YP_004795248.1| - 0.0079 16.5 0.2 0.036 14.4 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|344210928|ref|YP_004795248.1| - 0.011 14.7 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Thi4 family DXP_reductoisom PF02670.11 gi|344210928|ref|YP_004795248.1| - 0.042 14.3 0.2 0.11 12.9 0.1 1.7 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DUF1320 PF07030.7 gi|344210928|ref|YP_004795248.1| - 0.37 10.5 3.6 0.89 9.2 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1320) NadA PF02445.11 gi|344210929|ref|YP_004795249.1| - 6.7e-101 336.9 0.1 7.7e-101 336.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Glyco_hydro_71 PF03659.9 gi|344210929|ref|YP_004795249.1| - 0.011 14.2 0.1 0.017 13.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 Amidohydro_3 PF07969.6 gi|344210930|ref|YP_004795250.1| - 5.6e-67 226.7 13.5 6.7e-67 226.4 9.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|344210930|ref|YP_004795250.1| - 8.1e-11 41.5 0.2 2.6e-10 39.9 0.2 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|344210930|ref|YP_004795250.1| - 2.5e-07 30.6 0.2 0.017 14.8 0.1 2.9 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|344210930|ref|YP_004795250.1| - 9.9e-07 29.0 27.1 7.2e-05 22.9 18.8 3.0 1 1 0 1 1 1 1 Amidohydrolase DUF2525 PF10733.4 gi|344210930|ref|YP_004795250.1| - 0.053 13.3 1.1 0.24 11.2 0.8 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2525) HMG-CoA_red PF00368.13 gi|344210931|ref|YP_004795251.1| - 2.3e-137 457.6 5.8 2.6e-137 457.4 4.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase 7TMR-DISM_7TM PF07695.6 gi|344210932|ref|YP_004795252.1| - 0.0095 15.6 5.7 0.011 15.4 3.9 1.2 1 0 0 1 1 1 1 7TM diverse intracellular signalling COX5B PF01215.14 gi|344210933|ref|YP_004795253.1| - 0.064 12.9 1.9 4 7.1 0.3 2.9 2 1 1 3 3 3 0 Cytochrome c oxidase subunit Vb zf-UDP PF14569.1 gi|344210933|ref|YP_004795253.1| - 0.096 12.4 1.4 0.19 11.4 1.0 1.5 1 0 0 1 1 1 0 Zinc-binding RING-finger Rrf2 PF02082.15 gi|344210933|ref|YP_004795253.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Zn-ribbon_8 PF09723.5 gi|344210933|ref|YP_004795253.1| - 0.23 11.4 1.6 0.63 10.0 1.1 1.9 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|344210933|ref|YP_004795253.1| - 0.44 10.2 2.5 8.7 6.1 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344210933|ref|YP_004795253.1| - 0.45 10.1 3.2 5.7 6.6 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF3306 PF11748.3 gi|344210933|ref|YP_004795253.1| - 2.4 8.8 7.6 11 6.6 5.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3306) FYDLN_acid PF09538.5 gi|344210933|ref|YP_004795253.1| - 3.7 8.1 6.9 11 6.7 4.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Cupin_2 PF07883.6 gi|344210934|ref|YP_004795254.1| - 2.3e-22 78.2 3.8 3.2e-22 77.7 2.7 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|344210934|ref|YP_004795254.1| - 7.7e-13 48.2 0.9 1e-12 47.8 0.6 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|344210934|ref|YP_004795254.1| - 9.2e-07 28.7 0.0 1.2e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|344210934|ref|YP_004795254.1| - 3.4e-06 26.7 0.0 4.3e-06 26.4 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|344210934|ref|YP_004795254.1| - 4.5e-06 26.1 0.2 5.5e-06 25.8 0.2 1.1 1 0 0 1 1 1 1 Cupin AraC_binding_2 PF14525.1 gi|344210934|ref|YP_004795254.1| - 7e-05 22.4 0.1 8.1e-05 22.2 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|344210934|ref|YP_004795254.1| - 0.00034 19.9 0.1 0.00045 19.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.7 gi|344210934|ref|YP_004795254.1| - 0.0025 17.7 0.0 0.003 17.4 0.0 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_6 PF12852.2 gi|344210934|ref|YP_004795254.1| - 0.0028 17.2 0.1 0.0034 17.0 0.1 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|344210934|ref|YP_004795254.1| - 0.0038 17.0 0.3 0.0052 16.5 0.2 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain ARD PF03079.9 gi|344210934|ref|YP_004795254.1| - 0.0098 15.8 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 1 ARD/ARD' family Auxin_BP PF02041.11 gi|344210934|ref|YP_004795254.1| - 0.12 11.8 0.1 0.2 11.1 0.1 1.5 1 1 0 1 1 1 0 Auxin binding protein HCV_NS4a PF01006.15 gi|344210936|ref|YP_004795256.1| - 0.3 10.6 1.6 0.4 10.2 0.6 1.6 1 1 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a ATP1G1_PLM_MAT8 PF02038.11 gi|344210937|ref|YP_004795257.1| - 0.032 13.2 0.1 0.032 13.2 0.1 1.9 2 1 0 2 2 2 0 ATP1G1/PLM/MAT8 family Iso_dh PF00180.15 gi|344210938|ref|YP_004795258.1| - 3.5e-109 364.9 0.0 4.8e-109 364.4 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.13 gi|344210939|ref|YP_004795259.1| - 1.2e-52 178.6 9.0 1.5e-52 178.2 6.2 1.2 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.19 gi|344210940|ref|YP_004795260.1| - 4.1e-44 150.6 0.9 5e-44 150.3 0.6 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 RecR PF02132.10 gi|344210941|ref|YP_004795261.1| - 0.029 13.7 0.9 0.94 8.9 0.1 2.2 2 0 0 2 2 2 0 RecR protein DAN PF03045.10 gi|344210941|ref|YP_004795261.1| - 0.034 13.5 0.7 0.038 13.4 0.5 1.1 1 0 0 1 1 1 0 DAN domain Cas_CXXC_CXXC PF09706.5 gi|344210941|ref|YP_004795261.1| - 0.11 12.6 0.5 0.17 12.1 0.3 1.3 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_CXXC_CXXC) zf-C2H2 PF00096.21 gi|344210941|ref|YP_004795261.1| - 0.12 12.7 2.0 1.4 9.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type C1_2 PF03107.11 gi|344210941|ref|YP_004795261.1| - 0.16 12.1 1.6 8.8 6.5 0.1 2.2 2 0 0 2 2 2 0 C1 domain Elf1 PF05129.8 gi|344210941|ref|YP_004795261.1| - 0.24 11.1 1.8 0.42 10.3 1.3 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like HIT PF01230.18 gi|344210942|ref|YP_004795262.1| - 1.2e-12 48.1 0.0 3.1e-12 46.8 0.0 1.6 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|344210942|ref|YP_004795262.1| - 0.0001 22.4 0.0 0.00017 21.7 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|344210942|ref|YP_004795262.1| - 0.00065 19.3 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Rieske PF00355.21 gi|344210943|ref|YP_004795263.1| - 1.4e-06 27.7 0.1 2.7e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|344210943|ref|YP_004795263.1| - 0.21 11.6 2.5 0.69 10.0 1.7 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cation_efflux PF01545.16 gi|344210944|ref|YP_004795264.1| - 5.9e-55 186.3 0.1 6.6e-55 186.1 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family DoxX PF07681.7 gi|344210945|ref|YP_004795265.1| - 9.5e-09 35.5 2.3 1.4e-08 35.0 1.6 1.2 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.6 gi|344210945|ref|YP_004795265.1| - 0.00023 20.9 0.0 0.0073 16.1 0.0 2.0 1 1 0 1 1 1 1 HR-like lesion-inducing TPR_14 PF13428.1 gi|344210945|ref|YP_004795265.1| - 0.75 10.6 3.5 51 4.9 0.0 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat Radical_SAM PF04055.16 gi|344210946|ref|YP_004795266.1| - 2.1e-22 80.0 0.0 3.6e-22 79.3 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|344210946|ref|YP_004795266.1| - 2.1e-19 69.1 0.1 4.8e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|344210946|ref|YP_004795266.1| - 5.4e-06 26.0 0.1 1.1e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 TRAM domain DUF550 PF04447.7 gi|344210946|ref|YP_004795266.1| - 0.11 12.1 0.1 0.56 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF550) DeoC PF01791.4 gi|344210947|ref|YP_004795267.1| - 5.9e-28 97.7 0.0 7.5e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF63 PF01889.12 gi|344210948|ref|YP_004795268.1| - 1.7e-20 74.2 13.6 2.6e-20 73.6 9.5 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF1049 PF06305.6 gi|344210950|ref|YP_004795270.1| - 0.49 9.9 0.0 0.49 9.9 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1049) UbiA PF01040.13 gi|344210951|ref|YP_004795271.1| - 0.027 13.6 0.2 0.028 13.6 0.2 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family ATPase_gene1 PF09527.5 gi|344210951|ref|YP_004795271.1| - 0.21 11.4 6.4 0.28 11.0 2.4 2.0 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF1049 PF06305.6 gi|344210951|ref|YP_004795271.1| - 2.6 7.6 5.0 5.4 6.5 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) PNP_UDP_1 PF01048.15 gi|344210952|ref|YP_004795272.1| - 2.6e-46 157.4 2.1 3.2e-46 157.2 1.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HPP PF04982.8 gi|344210953|ref|YP_004795273.1| - 2e-07 30.8 1.1 3.9e-07 29.9 0.8 1.5 1 0 0 1 1 1 1 HPP family Usp PF00582.21 gi|344210953|ref|YP_004795273.1| - 2.6e-07 30.9 1.6 0.0019 18.3 0.2 4.0 2 2 0 2 2 2 2 Universal stress protein family TrkA_N PF02254.13 gi|344210954|ref|YP_004795274.1| - 6.7e-28 97.0 1.7 1e-27 96.4 1.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|344210954|ref|YP_004795274.1| - 8.5e-14 51.0 4.3 1.1e-13 50.6 1.3 2.2 2 0 0 2 2 2 1 Ion channel NAD_binding_7 PF13241.1 gi|344210954|ref|YP_004795274.1| - 0.00049 20.3 0.2 0.0014 18.8 0.1 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding Ion_trans PF00520.26 gi|344210954|ref|YP_004795274.1| - 0.001 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Ion transport protein Pam17 PF08566.5 gi|344210954|ref|YP_004795274.1| - 0.15 11.7 0.1 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 VKOR PF07884.9 gi|344210954|ref|YP_004795274.1| - 0.62 9.9 4.9 0.89 9.4 0.1 2.5 2 1 0 2 2 2 0 Vitamin K epoxide reductase family TrkA_C PF02080.16 gi|344210955|ref|YP_004795275.1| - 1.2e-14 53.6 0.4 1.8e-13 49.8 0.1 2.6 2 0 0 2 2 2 1 TrkA-C domain Neisseria_TspB PF05616.8 gi|344210955|ref|YP_004795275.1| - 0.86 7.9 2.8 1.2 7.4 1.9 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein TrkA_C PF02080.16 gi|344210956|ref|YP_004795276.1| - 1.5e-06 27.6 0.1 1.5e-06 27.6 0.1 2.4 3 0 0 3 3 3 1 TrkA-C domain ThiS PF02597.15 gi|344210957|ref|YP_004795277.1| - 3.2e-11 43.4 0.2 3.9e-11 43.2 0.2 1.1 1 0 0 1 1 1 1 ThiS family PspA_IM30 PF04012.7 gi|344210957|ref|YP_004795277.1| - 0.1 11.9 0.2 0.12 11.7 0.2 1.2 1 0 0 1 1 1 0 PspA/IM30 family PTS-HPr PF00381.14 gi|344210957|ref|YP_004795277.1| - 0.23 11.3 2.8 5.4 6.9 0.2 2.1 2 0 0 2 2 2 0 PTS HPr component phosphorylation site HisKA PF00512.20 gi|344210958|ref|YP_004795278.1| - 2.4e-05 24.2 0.6 0.00014 21.7 0.1 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.21 gi|344210958|ref|YP_004795278.1| - 0.0048 16.6 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|344210958|ref|YP_004795278.1| - 0.011 15.9 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 PAS domain SPOB_a PF14689.1 gi|344210958|ref|YP_004795278.1| - 0.027 14.0 0.1 0.056 13.0 0.1 1.6 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acetyltransf_1 PF00583.19 gi|344210959|ref|YP_004795279.1| - 8.4e-10 38.5 0.1 4.1e-09 36.3 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.1 gi|344210959|ref|YP_004795279.1| - 2.5e-07 30.7 0.8 2.5e-07 30.7 0.6 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344210959|ref|YP_004795279.1| - 3.1e-07 30.5 2.6 3.2e-05 24.0 0.3 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344210959|ref|YP_004795279.1| - 0.00025 21.1 0.0 0.00045 20.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344210959|ref|YP_004795279.1| - 0.017 15.0 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|344210959|ref|YP_004795279.1| - 0.045 13.8 0.1 0.079 13.1 0.1 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344210959|ref|YP_004795279.1| - 0.046 13.5 0.1 0.23 11.3 0.1 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Asparaginase PF00710.15 gi|344210960|ref|YP_004795280.1| - 5e-89 298.2 0.2 6.6e-89 297.8 0.2 1.1 1 0 0 1 1 1 1 Asparaginase DUF2285 PF10074.4 gi|344210961|ref|YP_004795281.1| - 0.063 13.6 0.2 0.063 13.6 0.2 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Bax1-I PF01027.15 gi|344210962|ref|YP_004795282.1| - 0.22 11.0 5.2 0.29 10.7 3.6 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Na_H_antiporter PF03553.9 gi|344210963|ref|YP_004795283.1| - 4.9e-71 239.2 30.9 6.9e-67 225.6 10.2 2.8 1 1 1 2 2 2 2 Na+/H+ antiporter family CitMHS PF03600.11 gi|344210963|ref|YP_004795283.1| - 0.15 10.6 34.2 0.1 11.1 5.0 4.1 3 1 1 4 4 4 0 Citrate transporter HTH_5 PF01022.15 gi|344210964|ref|YP_004795284.1| - 6.6e-16 57.7 0.3 9.6e-15 53.9 0.0 2.8 3 1 1 4 4 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|344210964|ref|YP_004795284.1| - 2.7e-12 46.3 0.6 7.9e-11 41.6 0.0 2.5 3 0 0 3 3 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|344210964|ref|YP_004795284.1| - 9.7e-11 41.2 0.0 1.9e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344210964|ref|YP_004795284.1| - 1e-09 37.9 0.8 4e-07 29.6 0.0 2.7 3 0 0 3 3 2 1 MarR family HTH_24 PF13412.1 gi|344210964|ref|YP_004795284.1| - 4.5e-08 32.3 0.0 2.1e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|344210964|ref|YP_004795284.1| - 3.7e-07 29.7 0.0 9.7e-06 25.1 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|344210964|ref|YP_004795284.1| - 1.1e-06 28.8 0.1 0.0025 18.1 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|344210964|ref|YP_004795284.1| - 6e-06 26.1 0.0 0.00031 20.5 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|344210964|ref|YP_004795284.1| - 7.8e-06 25.9 0.0 0.0027 17.7 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|344210964|ref|YP_004795284.1| - 3.1e-05 23.5 0.0 6.3e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|344210964|ref|YP_004795284.1| - 4.2e-05 22.9 0.1 0.072 12.5 0.0 2.8 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|344210964|ref|YP_004795284.1| - 0.00015 21.4 0.0 0.011 15.5 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain PadR PF03551.9 gi|344210964|ref|YP_004795284.1| - 0.00032 20.4 0.9 0.0056 16.4 0.0 3.2 3 2 1 4 4 4 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.11 gi|344210964|ref|YP_004795284.1| - 0.0027 17.2 0.2 0.078 12.5 0.0 2.7 3 0 0 3 3 2 1 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|344210964|ref|YP_004795284.1| - 0.004 17.0 0.0 0.44 10.5 0.0 2.3 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_CodY PF08222.6 gi|344210964|ref|YP_004795284.1| - 0.0045 16.2 0.0 0.0092 15.3 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF2250 PF10007.4 gi|344210964|ref|YP_004795284.1| - 0.0066 16.3 0.0 0.18 11.7 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|344210964|ref|YP_004795284.1| - 0.01 15.3 0.0 3.4 7.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|344210964|ref|YP_004795284.1| - 0.018 14.6 0.0 0.048 13.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DUF2513 PF10711.4 gi|344210964|ref|YP_004795284.1| - 0.018 15.0 0.1 0.056 13.5 0.0 1.8 3 0 0 3 3 1 0 Hypothetical protein (DUF2513) HTH_10 PF04967.7 gi|344210964|ref|YP_004795284.1| - 0.022 14.3 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 1 0 HTH DNA binding domain HTH_IclR PF09339.5 gi|344210964|ref|YP_004795284.1| - 0.054 13.0 0.2 0.24 10.9 0.0 2.3 2 1 0 2 2 2 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344210964|ref|YP_004795284.1| - 0.067 12.7 0.1 1.2 8.6 0.0 3.1 2 1 1 3 3 3 0 AsnC-type helix-turn-helix domain Cdc6_C PF09079.6 gi|344210964|ref|YP_004795284.1| - 0.067 12.9 0.4 1.1 8.9 0.0 2.6 3 0 0 3 3 2 0 CDC6, C terminal HxlR PF01638.12 gi|344210964|ref|YP_004795284.1| - 0.077 12.6 0.0 0.83 9.3 0.0 2.3 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_36 PF13730.1 gi|344210964|ref|YP_004795284.1| - 0.089 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ArsR PF09824.4 gi|344210964|ref|YP_004795284.1| - 0.098 11.9 0.0 0.3 10.3 0.0 1.7 2 0 0 2 2 2 0 ArsR transcriptional regulator HTH_34 PF13601.1 gi|344210964|ref|YP_004795284.1| - 0.12 12.4 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Leu_zip PF15294.1 gi|344210965|ref|YP_004795285.1| - 0.028 13.5 1.7 0.038 13.1 1.2 1.1 1 0 0 1 1 1 0 Leucine zipper GvpG PF05120.7 gi|344210965|ref|YP_004795285.1| - 0.032 14.0 2.1 0.059 13.1 1.4 1.4 1 0 0 1 1 1 0 Gas vesicle protein G Fmp27_WPPW PF10359.4 gi|344210965|ref|YP_004795285.1| - 0.076 11.4 0.2 0.11 10.8 0.1 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain GBP_C PF02841.9 gi|344210965|ref|YP_004795285.1| - 0.65 9.1 5.9 0.81 8.8 4.1 1.1 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DivIC PF04977.10 gi|344210965|ref|YP_004795285.1| - 0.98 8.9 3.7 2 7.9 2.3 1.7 1 1 0 1 1 1 0 Septum formation initiator DUF1405 PF07187.6 gi|344210966|ref|YP_004795286.1| - 2.2e-43 147.8 13.6 2.2e-43 147.8 9.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1405) HTH_10 PF04967.7 gi|344210968|ref|YP_004795288.1| - 1.1e-15 56.9 0.0 1.9e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|344210968|ref|YP_004795288.1| - 0.0011 18.1 0.0 0.002 17.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|344210968|ref|YP_004795288.1| - 0.029 14.0 0.1 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 MarR family Peptidase_S49 PF01343.13 gi|344210968|ref|YP_004795288.1| - 0.053 13.3 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S49 HTH_37 PF13744.1 gi|344210968|ref|YP_004795288.1| - 0.096 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain ATG16 PF08614.6 gi|344210969|ref|YP_004795289.1| - 0.00059 19.7 8.8 0.001 18.9 6.1 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) Fmp27_WPPW PF10359.4 gi|344210969|ref|YP_004795289.1| - 0.00074 18.0 6.1 0.0011 17.5 4.3 1.1 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain FadA PF09403.5 gi|344210969|ref|YP_004795289.1| - 0.007 16.3 6.4 0.013 15.5 4.4 1.4 1 0 0 1 1 1 1 Adhesion protein FadA bZIP_2 PF07716.10 gi|344210969|ref|YP_004795289.1| - 0.0086 15.8 14.2 0.15 11.8 1.7 2.5 1 1 1 2 2 2 2 Basic region leucine zipper Mto2_bdg PF12808.2 gi|344210969|ref|YP_004795289.1| - 0.015 15.3 4.6 0.015 15.3 3.2 2.6 1 1 1 2 2 2 0 Micro-tubular organiser Mto1 C-term Mto2-binding region bZIP_1 PF00170.16 gi|344210969|ref|YP_004795289.1| - 0.018 14.9 13.4 0.58 10.1 2.6 2.5 1 1 1 2 2 2 0 bZIP transcription factor Mnd1 PF03962.10 gi|344210969|ref|YP_004795289.1| - 0.021 14.5 7.9 0.039 13.6 5.5 1.4 1 0 0 1 1 1 0 Mnd1 family DUF972 PF06156.8 gi|344210969|ref|YP_004795289.1| - 0.025 14.9 4.3 0.052 13.9 3.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|344210969|ref|YP_004795289.1| - 0.095 12.4 2.2 0.16 11.6 1.6 1.4 1 0 0 1 1 1 0 Laminin Domain II ERM PF00769.14 gi|344210969|ref|YP_004795289.1| - 0.12 11.8 11.7 0.19 11.2 8.1 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family HOOK PF05622.7 gi|344210969|ref|YP_004795289.1| - 0.12 10.1 9.3 0.17 9.6 6.4 1.1 1 0 0 1 1 1 0 HOOK protein TSC22 PF01166.13 gi|344210969|ref|YP_004795289.1| - 0.13 12.2 8.9 2.9 7.9 0.4 2.6 2 1 0 2 2 2 0 TSC-22/dip/bun family IncA PF04156.9 gi|344210969|ref|YP_004795289.1| - 0.25 10.8 16.0 0.063 12.8 8.8 1.7 2 0 0 2 2 2 0 IncA protein Snapin_Pallidin PF14712.1 gi|344210969|ref|YP_004795289.1| - 0.36 11.1 4.6 6.9 7.0 3.2 2.5 1 1 0 1 1 1 0 Snapin/Pallidin DUF2968 PF11180.3 gi|344210969|ref|YP_004795289.1| - 0.41 9.9 8.4 0.74 9.1 5.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) DUF904 PF06005.7 gi|344210969|ref|YP_004795289.1| - 0.44 10.8 13.2 1.8e+02 2.4 9.1 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF904) WD40_alt PF14077.1 gi|344210969|ref|YP_004795289.1| - 0.61 9.7 7.1 0.44 10.2 0.4 2.6 2 0 0 2 2 2 0 Alternative WD40 repeat motif DUF342 PF03961.8 gi|344210969|ref|YP_004795289.1| - 0.64 8.3 3.0 0.86 7.9 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DivIC PF04977.10 gi|344210969|ref|YP_004795289.1| - 0.65 9.5 13.5 0.76 9.3 3.2 2.9 2 1 1 3 3 3 0 Septum formation initiator AKNA PF12443.3 gi|344210969|ref|YP_004795289.1| - 0.68 9.9 4.0 0.92 9.5 1.6 2.1 2 1 0 2 2 1 0 AT-hook-containing transcription factor DUF4407 PF14362.1 gi|344210969|ref|YP_004795289.1| - 0.76 8.6 5.9 2 7.3 3.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Dor1 PF04124.7 gi|344210969|ref|YP_004795289.1| - 0.79 8.1 6.4 1.2 7.5 4.5 1.2 1 0 0 1 1 1 0 Dor1-like family Transposase_22 PF02994.9 gi|344210969|ref|YP_004795289.1| - 0.96 7.8 6.4 1.4 7.3 4.5 1.1 1 0 0 1 1 1 0 L1 transposable element ADIP PF11559.3 gi|344210969|ref|YP_004795289.1| - 0.98 9.3 12.0 0.22 11.4 6.0 1.6 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding GAS PF13851.1 gi|344210969|ref|YP_004795289.1| - 1.1 8.4 7.7 1.6 7.8 5.4 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Med8 PF10232.4 gi|344210969|ref|YP_004795289.1| - 1.2 8.6 4.8 1.8 8.0 3.4 1.2 1 0 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 Atg14 PF10186.4 gi|344210969|ref|YP_004795289.1| - 1.3 7.9 6.2 2.2 7.1 4.3 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|344210969|ref|YP_004795289.1| - 1.3 7.9 10.9 2.1 7.3 7.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 Spc24 PF08286.6 gi|344210969|ref|YP_004795289.1| - 1.3 8.7 8.0 0.7 9.6 3.2 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF1192 PF06698.6 gi|344210969|ref|YP_004795289.1| - 1.6 8.6 13.9 5.3 6.9 1.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) TMF_DNA_bd PF12329.3 gi|344210969|ref|YP_004795289.1| - 1.6 8.5 9.9 4.2 7.2 6.9 1.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Bap31 PF05529.7 gi|344210969|ref|YP_004795289.1| - 2.1 7.7 4.1 3.1 7.2 2.8 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like FUSC PF04632.7 gi|344210969|ref|YP_004795289.1| - 3.3 6.0 8.2 0.82 8.0 3.5 1.6 2 0 0 2 2 2 0 Fusaric acid resistance protein family VIT1 PF01988.14 gi|344210969|ref|YP_004795289.1| - 7.4 5.9 5.7 11 5.3 3.9 1.2 1 0 0 1 1 1 0 VIT family DUF1611 PF07755.6 gi|344210970|ref|YP_004795290.1| - 2.4e-110 367.8 0.3 2.8e-110 367.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CbiA PF01656.18 gi|344210970|ref|YP_004795290.1| - 0.024 14.0 0.2 0.081 12.3 0.1 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MR_MLE_C PF13378.1 gi|344210971|ref|YP_004795291.1| - 3.4e-16 59.1 0.5 1.1e-15 57.6 0.3 1.9 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|344210971|ref|YP_004795291.1| - 5.5e-16 58.8 5.7 1.3e-15 57.7 3.9 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|344210971|ref|YP_004795291.1| - 2.4e-09 37.2 0.4 6.6e-09 35.7 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|344210971|ref|YP_004795291.1| - 0.0015 17.5 0.3 0.0023 16.9 0.2 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus AhpC-TSA PF00578.16 gi|344210972|ref|YP_004795292.1| - 1e-30 105.9 0.0 1.2e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344210972|ref|YP_004795292.1| - 7e-24 84.0 0.0 8e-24 83.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|344210972|ref|YP_004795292.1| - 0.0021 17.5 0.0 0.0027 17.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|344210972|ref|YP_004795292.1| - 0.018 14.9 0.0 2.7 7.9 0.0 2.1 2 0 0 2 2 2 0 AhpC/TSA antioxidant enzyme Hexapep PF00132.19 gi|344210974|ref|YP_004795294.1| - 1.3e-13 49.8 12.9 0.00022 20.5 0.3 4.0 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344210974|ref|YP_004795294.1| - 0.00022 20.7 9.0 0.016 14.7 0.3 3.7 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase Usp PF00582.21 gi|344210975|ref|YP_004795295.1| - 6e-35 120.4 1.8 6.7e-35 120.3 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family MGS PF02142.17 gi|344210975|ref|YP_004795295.1| - 0.15 12.0 1.1 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 MGS-like domain tRNA-synt_2b PF00587.20 gi|344210977|ref|YP_004795297.1| - 2e-37 128.4 0.0 3.7e-37 127.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|344210977|ref|YP_004795297.1| - 2.4e-16 59.4 0.3 5.7e-16 58.2 0.2 1.7 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.16 gi|344210977|ref|YP_004795297.1| - 7.2e-14 51.3 0.2 1.9e-13 50.0 0.1 1.7 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.9 gi|344210977|ref|YP_004795297.1| - 7.9e-13 48.0 0.0 1.6e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain ThiS PF02597.15 gi|344210977|ref|YP_004795297.1| - 0.15 12.4 2.4 0.82 10.1 0.1 3.0 3 0 0 3 3 3 0 ThiS family DAGK_cat PF00781.19 gi|344210979|ref|YP_004795299.1| - 7e-19 67.5 0.7 1.5e-18 66.4 0.5 1.5 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Polyketide_cyc2 PF10604.4 gi|344210979|ref|YP_004795299.1| - 0.0085 16.2 1.9 6.2 6.9 0.1 2.9 3 0 0 3 3 3 2 Polyketide cyclase / dehydrase and lipid transport CitMHS PF03600.11 gi|344210980|ref|YP_004795300.1| - 7.8e-46 156.2 0.0 5.1e-40 137.1 0.0 1.6 1 1 1 2 2 2 2 Citrate transporter TrkA_C PF02080.16 gi|344210980|ref|YP_004795300.1| - 4.8e-20 70.9 3.7 1.7e-10 40.3 0.3 3.4 3 0 0 3 3 3 3 TrkA-C domain Na_sulph_symp PF00939.14 gi|344210980|ref|YP_004795300.1| - 2.1e-14 53.2 35.8 1.3e-10 40.7 9.9 3.3 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region PspA_IM30 PF04012.7 gi|344210981|ref|YP_004795301.1| - 6.8e-34 117.1 39.4 6.8e-34 117.1 27.3 1.7 2 0 0 2 2 2 1 PspA/IM30 family Snf7 PF03357.16 gi|344210981|ref|YP_004795301.1| - 0.0004 19.7 19.1 0.0004 19.7 13.2 4.4 1 1 3 4 4 4 1 Snf7 gpW PF02831.10 gi|344210981|ref|YP_004795301.1| - 0.081 12.4 1.7 3.3 7.3 0.1 3.0 2 0 0 2 2 2 0 gpW DUF479 PF04336.7 gi|344210981|ref|YP_004795301.1| - 0.83 9.7 13.0 9.7 6.3 1.0 3.5 1 1 2 3 3 3 0 Protein of unknown function, DUF479 AAA_13 PF13166.1 gi|344210981|ref|YP_004795301.1| - 0.93 7.8 33.2 0.11 10.9 19.4 1.7 1 1 1 2 2 2 0 AAA domain DUF3138 PF11336.3 gi|344210981|ref|YP_004795301.1| - 0.97 7.5 6.3 1.7 6.7 4.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF948 PF06103.6 gi|344210981|ref|YP_004795301.1| - 1.7 8.5 15.5 12 5.8 3.7 3.6 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Snapin_Pallidin PF14712.1 gi|344210981|ref|YP_004795301.1| - 1.8 8.9 28.6 0.054 13.7 7.4 3.6 1 1 2 3 3 3 0 Snapin/Pallidin YlqD PF11068.3 gi|344210981|ref|YP_004795301.1| - 2.3 8.2 43.6 4.5 7.3 12.2 3.4 1 1 2 3 3 3 0 YlqD protein DUF972 PF06156.8 gi|344210981|ref|YP_004795301.1| - 2.4 8.5 37.8 0.42 10.9 5.7 4.0 1 1 1 2 2 1 0 Protein of unknown function (DUF972) ERM PF00769.14 gi|344210981|ref|YP_004795301.1| - 3 7.3 54.8 0.069 12.6 32.7 1.8 1 1 1 2 2 2 0 Ezrin/radixin/moesin family TPR_MLP1_2 PF07926.7 gi|344210981|ref|YP_004795301.1| - 5.8 6.6 48.0 3.8 7.2 19.9 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Abhydrolase_5 PF12695.2 gi|344210982|ref|YP_004795302.1| - 5.7e-11 42.3 0.3 8e-11 41.8 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|344210982|ref|YP_004795302.1| - 4.9e-06 26.5 8.4 0.0039 17.1 0.4 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|344210982|ref|YP_004795302.1| - 0.00018 21.8 0.7 0.0012 19.1 0.5 1.9 1 1 0 1 1 1 1 Thioesterase domain DLH PF01738.13 gi|344210982|ref|YP_004795302.1| - 0.00041 19.6 0.1 0.00083 18.7 0.1 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|344210982|ref|YP_004795302.1| - 0.0081 15.6 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.15 gi|344210982|ref|YP_004795302.1| - 0.019 14.5 0.5 3.9 6.9 0.1 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|344210982|ref|YP_004795302.1| - 0.045 13.4 0.1 0.38 10.4 0.0 1.9 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal LIP PF03583.9 gi|344210982|ref|YP_004795302.1| - 0.099 11.8 0.1 0.14 11.3 0.1 1.4 1 0 0 1 1 1 0 Secretory lipase Lipase_3 PF01764.20 gi|344210982|ref|YP_004795302.1| - 0.11 12.0 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Lipase (class 3) VirJ PF06057.6 gi|344210982|ref|YP_004795302.1| - 0.14 11.9 0.0 1.7 8.3 0.0 2.0 1 1 1 2 2 2 0 Bacterial virulence protein (VirJ) Peptidase_S15 PF02129.13 gi|344210982|ref|YP_004795302.1| - 0.15 11.4 0.1 0.28 10.5 0.1 1.4 1 1 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Tim17 PF02466.14 gi|344210984|ref|YP_004795304.1| - 0.03 14.3 0.3 0.031 14.3 0.2 1.0 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family EmrE PF13536.1 gi|344210984|ref|YP_004795304.1| - 0.14 12.3 1.7 0.15 12.2 1.2 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter CTP_synth_N PF06418.9 gi|344210985|ref|YP_004795305.1| - 9.7e-127 421.7 0.1 1.4e-126 421.2 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|344210985|ref|YP_004795305.1| - 6.6e-51 172.4 0.0 1.4e-50 171.4 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|344210985|ref|YP_004795305.1| - 1.8e-07 30.8 0.0 2.9e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|344210985|ref|YP_004795305.1| - 2e-07 30.6 0.0 4e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|344210985|ref|YP_004795305.1| - 0.067 12.7 0.0 0.18 11.3 0.0 1.8 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Glyco_hydro_3_C PF01915.17 gi|344210985|ref|YP_004795305.1| - 0.099 12.1 0.0 0.83 9.1 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain GMP_synt_C PF00958.17 gi|344210986|ref|YP_004795306.1| - 8.3e-29 99.1 0.3 1.7e-28 98.1 0.0 1.7 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|344210986|ref|YP_004795306.1| - 9.1e-09 34.5 0.0 2.1e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Asn_synthase PF00733.16 gi|344210986|ref|YP_004795306.1| - 0.00026 20.5 0.1 0.00076 19.0 0.0 1.7 2 0 0 2 2 2 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|344210986|ref|YP_004795306.1| - 0.00029 19.5 0.0 0.0055 15.3 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.8 gi|344210986|ref|YP_004795306.1| - 0.0074 15.5 0.0 0.032 13.5 0.0 1.8 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|344210986|ref|YP_004795306.1| - 0.015 14.7 0.0 0.039 13.4 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.14 gi|344210986|ref|YP_004795306.1| - 0.09 12.5 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TrkA_N PF02254.13 gi|344210987|ref|YP_004795307.1| - 0.00035 20.5 0.1 0.00036 20.5 0.1 1.2 1 0 0 1 1 1 1 TrkA-N domain A2M_N_2 PF07703.9 gi|344210987|ref|YP_004795307.1| - 0.065 13.0 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Alpha-2-macroglobulin family N-terminal region TM_helix PF05552.7 gi|344210988|ref|YP_004795308.1| - 9.9e-14 50.7 18.2 4.2e-06 26.3 0.2 4.8 4 1 0 4 4 4 3 Conserved TM helix UreF PF01730.11 gi|344210988|ref|YP_004795308.1| - 4.6 7.3 11.7 0.035 14.2 1.7 2.3 3 1 0 3 3 3 0 UreF Lactamase_B PF00753.22 gi|344210989|ref|YP_004795309.1| - 1.3e-21 77.1 7.2 1.7e-21 76.7 5.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344210989|ref|YP_004795309.1| - 0.0094 15.5 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Aldo_ket_red PF00248.16 gi|344210990|ref|YP_004795310.1| - 2.1e-64 217.1 0.0 2.4e-64 216.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MoCF_biosynth PF00994.19 gi|344210992|ref|YP_004795312.1| - 1.3e-15 57.0 0.7 2.2e-15 56.3 0.5 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF605 PF04652.11 gi|344210992|ref|YP_004795312.1| - 0.34 10.2 21.7 0.42 9.9 15.0 1.0 1 0 0 1 1 1 0 Vta1 like CcmD PF04995.9 gi|344210993|ref|YP_004795313.1| - 0.17 11.6 0.7 7.3 6.4 0.1 2.4 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) HATPase_c PF02518.21 gi|344210994|ref|YP_004795314.1| - 1e-14 54.1 0.0 3e-14 52.6 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344210994|ref|YP_004795314.1| - 3.5e-14 52.7 2.4 5e-14 52.2 0.5 2.2 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|344210994|ref|YP_004795314.1| - 9.8e-10 38.7 0.1 1.3e-07 31.9 0.0 2.9 3 1 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|344210994|ref|YP_004795314.1| - 1.7e-08 34.2 0.1 3e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|344210994|ref|YP_004795314.1| - 4.1e-08 32.9 0.0 2.8e-07 30.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|344210994|ref|YP_004795314.1| - 1.1e-05 25.3 0.8 6.8e-05 22.7 0.6 2.3 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|344210994|ref|YP_004795314.1| - 3.4e-05 23.5 0.0 9e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|344210994|ref|YP_004795314.1| - 0.0023 17.5 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|344210994|ref|YP_004795314.1| - 0.0073 15.8 0.4 0.021 14.3 0.3 1.8 1 1 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_7 PF12860.2 gi|344210994|ref|YP_004795314.1| - 0.071 13.1 0.3 0.4 10.6 0.0 2.4 2 1 0 2 2 2 0 PAS fold XLF PF09302.6 gi|344210994|ref|YP_004795314.1| - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 XLF (XRCC4-like factor) adh_short PF00106.20 gi|344210995|ref|YP_004795315.1| - 4.6e-26 91.7 0.9 6.9e-26 91.1 0.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344210995|ref|YP_004795315.1| - 3.5e-08 33.3 1.3 3.9e-07 29.9 0.9 2.0 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|344210995|ref|YP_004795315.1| - 2.7e-05 24.2 2.8 4.2e-05 23.6 1.9 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|344210995|ref|YP_004795315.1| - 0.00037 19.9 0.1 0.00047 19.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NUDIX PF00293.23 gi|344210996|ref|YP_004795316.1| - 8.2e-14 51.3 1.2 1e-13 51.0 0.8 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|344210996|ref|YP_004795316.1| - 0.00073 18.9 0.5 0.0022 17.4 0.4 1.8 1 1 0 1 1 1 1 NUDIX domain GlnE PF03710.10 gi|344210996|ref|YP_004795316.1| - 0.098 11.8 0.6 0.51 9.5 0.1 2.1 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase HTH_10 PF04967.7 gi|344210997|ref|YP_004795317.1| - 1.2e-19 69.6 0.0 4e-19 67.9 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|344210997|ref|YP_004795317.1| - 4.1e-05 23.0 0.7 0.0058 16.1 0.0 3.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344210997|ref|YP_004795317.1| - 6.7e-05 22.1 0.0 0.00057 19.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344210997|ref|YP_004795317.1| - 0.0057 16.1 0.3 0.018 14.5 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|344210997|ref|YP_004795317.1| - 0.0069 16.0 0.0 0.02 14.5 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344210997|ref|YP_004795317.1| - 0.0069 16.1 0.2 0.047 13.5 0.0 2.5 2 2 0 2 2 2 1 Helix-turn-helix domain PuR_N PF09182.5 gi|344210997|ref|YP_004795317.1| - 0.036 13.6 0.0 0.092 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal UPF0122 PF04297.9 gi|344210997|ref|YP_004795317.1| - 0.062 13.3 0.1 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Phage_CI_repr PF07022.8 gi|344210997|ref|YP_004795317.1| - 0.15 12.1 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Polyketide_cyc2 PF10604.4 gi|344210998|ref|YP_004795318.1| - 2.1e-10 40.9 0.2 2.3e-10 40.7 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|344210998|ref|YP_004795318.1| - 0.013 15.4 0.1 0.063 13.2 0.0 1.9 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport AdoMet_Synthase PF01941.14 gi|344210999|ref|YP_004795319.1| - 0.0054 15.2 0.1 0.0065 15.0 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) Radical_SAM PF04055.16 gi|344211000|ref|YP_004795320.1| - 3.2e-18 66.4 0.0 4.3e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|344211000|ref|YP_004795320.1| - 6.1e-06 26.2 0.0 1.2e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|344211000|ref|YP_004795320.1| - 0.0001 22.4 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DAGK_cat PF00781.19 gi|344211000|ref|YP_004795320.1| - 0.13 11.7 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain HTH_10 PF04967.7 gi|344211001|ref|YP_004795321.1| - 5.2e-19 67.5 0.0 8e-19 66.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|344211001|ref|YP_004795321.1| - 0.025 13.9 0.1 0.16 11.2 0.1 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|344211001|ref|YP_004795321.1| - 0.17 11.4 0.3 0.88 9.1 0.2 2.1 1 1 0 1 1 1 0 LexA DNA binding domain DUF2249 PF10006.4 gi|344211003|ref|YP_004795323.1| - 3.5e-20 71.3 0.2 4e-20 71.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) EPO_TPO PF00758.13 gi|344211004|ref|YP_004795324.1| - 0.12 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Erythropoietin/thrombopoietin VirB3 PF05101.8 gi|344211004|ref|YP_004795324.1| - 0.85 9.6 8.4 0.13 12.2 0.4 2.0 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein HTH_20 PF12840.2 gi|344211005|ref|YP_004795325.1| - 9.9e-11 41.2 0.0 1.3e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344211005|ref|YP_004795325.1| - 2.7e-10 39.7 0.0 4e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|344211005|ref|YP_004795325.1| - 2.4e-05 23.9 0.0 3.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|344211005|ref|YP_004795325.1| - 0.0007 19.1 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_12 PF08461.5 gi|344211005|ref|YP_004795325.1| - 0.0028 17.3 0.1 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|344211005|ref|YP_004795325.1| - 0.0037 16.6 0.0 0.0052 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|344211005|ref|YP_004795325.1| - 0.0064 16.5 0.0 0.0093 16.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|344211005|ref|YP_004795325.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|344211005|ref|YP_004795325.1| - 0.018 14.8 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_DeoR PF08220.7 gi|344211005|ref|YP_004795325.1| - 0.022 14.2 0.1 0.073 12.6 0.0 1.8 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|344211005|ref|YP_004795325.1| - 0.029 14.0 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain DUF2089 PF09862.4 gi|344211005|ref|YP_004795325.1| - 0.049 13.4 0.0 0.058 13.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_27 PF13463.1 gi|344211005|ref|YP_004795325.1| - 0.049 13.9 0.0 0.07 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|344211005|ref|YP_004795325.1| - 0.05 13.1 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MarR_2 PF12802.2 gi|344211005|ref|YP_004795325.1| - 0.067 12.8 0.0 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.7 gi|344211005|ref|YP_004795325.1| - 0.067 12.7 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Penicillinase_R PF03965.11 gi|344211005|ref|YP_004795325.1| - 0.071 13.1 0.0 0.098 12.7 0.0 1.3 1 1 0 1 1 1 0 Penicillinase repressor HTH_30 PF13556.1 gi|344211005|ref|YP_004795325.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|344211006|ref|YP_004795326.1| - 8e-65 219.1 0.0 9e-65 218.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|344211006|ref|YP_004795326.1| - 9.4e-14 51.2 0.2 1.6e-13 50.4 0.2 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|344211006|ref|YP_004795326.1| - 1.1e-11 44.4 0.0 2.1e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|344211006|ref|YP_004795326.1| - 6.4e-06 24.7 0.0 1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|344211006|ref|YP_004795326.1| - 2.3e-05 23.3 0.0 3.2e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.16 gi|344211006|ref|YP_004795326.1| - 0.039 12.8 0.0 0.057 12.2 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-III Peptidase_S8 PF00082.17 gi|344211007|ref|YP_004795327.1| - 1.2e-58 198.5 7.6 1.2e-58 198.5 5.3 1.5 2 0 0 2 2 2 1 Subtilase family PKD PF00801.15 gi|344211007|ref|YP_004795327.1| - 1.1e-16 60.2 4.2 3.2e-16 58.8 1.3 2.6 2 0 0 2 2 2 1 PKD domain Y_Y_Y PF07495.8 gi|344211007|ref|YP_004795327.1| - 5.5e-05 22.8 0.5 0.0038 16.9 0.1 3.0 2 1 1 3 3 3 1 Y_Y_Y domain REJ PF02010.10 gi|344211007|ref|YP_004795327.1| - 0.0083 14.4 2.3 0.99 7.6 0.0 2.1 1 1 0 2 2 2 2 REJ domain Big_3_4 PF13754.1 gi|344211007|ref|YP_004795327.1| - 0.016 15.4 10.2 0.016 15.4 7.1 2.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) DUF4625 PF15418.1 gi|344211007|ref|YP_004795327.1| - 0.038 14.1 0.1 0.094 12.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) BiPBP_C PF06832.7 gi|344211007|ref|YP_004795327.1| - 0.043 13.7 0.0 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 Penicillin-Binding Protein C-terminus Family Thiolase_N PF00108.18 gi|344211008|ref|YP_004795328.1| - 9.9e-86 286.9 0.1 1.4e-85 286.4 0.1 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|344211008|ref|YP_004795328.1| - 1.9e-33 114.5 4.0 6.2e-33 112.8 0.1 2.7 2 1 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|344211008|ref|YP_004795328.1| - 0.0033 17.3 0.1 0.028 14.4 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ketoacyl-synt PF00109.21 gi|344211008|ref|YP_004795328.1| - 0.015 14.7 0.7 0.015 14.7 0.5 1.8 2 0 0 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain DivIVA PF05103.8 gi|344211009|ref|YP_004795329.1| - 0.026 14.5 0.1 0.028 14.4 0.1 1.0 1 0 0 1 1 1 0 DivIVA protein MarR_2 PF12802.2 gi|344211010|ref|YP_004795330.1| - 2e-10 40.1 0.2 6.7e-10 38.4 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|344211010|ref|YP_004795330.1| - 9.9e-10 37.6 0.0 5.8e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|344211010|ref|YP_004795330.1| - 4.1e-08 33.4 0.1 1.5e-07 31.5 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|344211010|ref|YP_004795330.1| - 7.1e-08 32.0 0.0 2.1e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|344211010|ref|YP_004795330.1| - 2.5e-06 27.1 0.0 7.7e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|344211010|ref|YP_004795330.1| - 1.5e-05 24.6 0.0 3.4e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_13 PF11972.3 gi|344211010|ref|YP_004795330.1| - 0.00019 21.1 0.7 0.0004 20.1 0.1 1.8 2 0 0 2 2 1 1 HTH DNA binding domain HTH_45 PF14947.1 gi|344211010|ref|YP_004795330.1| - 0.00022 20.9 0.0 0.00037 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|344211010|ref|YP_004795330.1| - 0.00092 18.8 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|344211010|ref|YP_004795330.1| - 0.0011 18.5 0.1 0.0021 17.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|344211010|ref|YP_004795330.1| - 0.0012 18.2 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) HTH_IclR PF09339.5 gi|344211010|ref|YP_004795330.1| - 0.0015 18.0 0.0 0.0031 17.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|344211010|ref|YP_004795330.1| - 0.002 18.0 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|344211010|ref|YP_004795330.1| - 0.0028 17.2 0.0 0.0059 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|344211010|ref|YP_004795330.1| - 0.0032 17.0 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Mnd1 PF03962.10 gi|344211010|ref|YP_004795330.1| - 0.0037 16.9 0.0 0.0056 16.3 0.0 1.2 1 0 0 1 1 1 1 Mnd1 family NMD3 PF04981.8 gi|344211010|ref|YP_004795330.1| - 0.0044 16.1 0.0 0.0071 15.4 0.0 1.3 1 0 0 1 1 1 1 NMD3 family GntR PF00392.16 gi|344211010|ref|YP_004795330.1| - 0.0048 16.3 0.1 0.013 14.8 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|344211010|ref|YP_004795330.1| - 0.0062 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|344211010|ref|YP_004795330.1| - 0.011 15.2 3.4 0.17 11.4 0.1 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain MotA_activ PF09114.5 gi|344211010|ref|YP_004795330.1| - 0.013 15.2 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HemN_C PF06969.11 gi|344211010|ref|YP_004795330.1| - 0.015 15.3 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_36 PF13730.1 gi|344211010|ref|YP_004795330.1| - 0.018 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|344211010|ref|YP_004795330.1| - 0.036 13.7 0.0 0.085 12.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_3 PF01381.17 gi|344211010|ref|YP_004795330.1| - 0.092 12.6 0.1 0.38 10.6 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix LexA_DNA_bind PF01726.11 gi|344211010|ref|YP_004795330.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Rio2_N PF09202.6 gi|344211010|ref|YP_004795330.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal DUF2250 PF10007.4 gi|344211010|ref|YP_004795330.1| - 0.13 12.1 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.1 gi|344211010|ref|YP_004795330.1| - 0.18 11.3 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) FaeA PF04703.7 gi|344211010|ref|YP_004795330.1| - 0.32 11.1 2.4 0.43 10.7 0.0 2.4 3 0 0 3 3 2 0 FaeA-like protein MDMPI_N PF11716.3 gi|344211010|ref|YP_004795330.1| - 3.6 8.0 14.0 2.7 8.4 3.6 2.5 2 1 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain Metallophos_2 PF12850.2 gi|344211011|ref|YP_004795331.1| - 0.00068 19.4 0.0 0.00094 19.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344211011|ref|YP_004795331.1| - 0.0096 15.3 0.2 0.062 12.6 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Septum_form PF13845.1 gi|344211011|ref|YP_004795331.1| - 0.096 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Septum formation DUF3463 PF11946.3 gi|344211011|ref|YP_004795331.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) Amino_oxidase PF01593.19 gi|344211013|ref|YP_004795333.1| - 7.4e-37 127.4 1.1 1.3e-36 126.6 0.8 1.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|344211013|ref|YP_004795333.1| - 2.4e-16 59.5 0.4 5.6e-16 58.3 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|344211013|ref|YP_004795333.1| - 9.6e-16 57.6 6.6 6.7e-15 54.8 4.6 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|344211013|ref|YP_004795333.1| - 4.3e-10 38.6 0.1 1.8e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|344211013|ref|YP_004795333.1| - 1.4e-09 37.2 2.4 2.6e-07 29.8 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|344211013|ref|YP_004795333.1| - 1.8e-07 30.5 0.8 8.5e-05 21.7 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|344211013|ref|YP_004795333.1| - 3.6e-07 30.2 0.1 0.00015 21.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|344211013|ref|YP_004795333.1| - 2.1e-06 26.9 0.2 1.3e-05 24.4 0.1 1.9 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.1 gi|344211013|ref|YP_004795333.1| - 1.5e-05 25.1 0.0 0.0001 22.4 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344211013|ref|YP_004795333.1| - 6.4e-05 23.2 0.8 0.0025 18.1 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344211013|ref|YP_004795333.1| - 9.5e-05 21.6 4.5 0.00016 20.9 1.2 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|344211013|ref|YP_004795333.1| - 0.0019 17.1 0.6 0.0035 16.2 0.4 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|344211013|ref|YP_004795333.1| - 0.0095 15.5 0.1 0.016 14.8 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|344211013|ref|YP_004795333.1| - 0.021 14.6 2.7 0.17 11.6 0.1 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|344211013|ref|YP_004795333.1| - 0.029 14.5 0.1 0.088 13.0 0.0 1.8 2 0 0 2 2 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|344211013|ref|YP_004795333.1| - 0.079 11.8 0.1 0.079 11.8 0.1 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|344211013|ref|YP_004795333.1| - 0.086 11.4 0.2 0.13 10.8 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase YjeF_N PF03853.10 gi|344211013|ref|YP_004795333.1| - 0.097 12.2 0.1 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus FMO-like PF00743.14 gi|344211013|ref|YP_004795333.1| - 0.11 10.6 0.0 0.15 10.2 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like PALP PF00291.20 gi|344211014|ref|YP_004795334.1| - 9.5e-51 172.8 1.6 1.1e-50 172.5 1.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.1 gi|344211014|ref|YP_004795334.1| - 0.012 14.7 1.0 0.027 13.6 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|344211014|ref|YP_004795334.1| - 0.015 15.1 0.2 0.027 14.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|344211014|ref|YP_004795334.1| - 0.047 13.5 1.0 0.086 12.7 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.1 gi|344211014|ref|YP_004795334.1| - 0.26 10.8 1.5 0.52 9.8 1.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|344211014|ref|YP_004795334.1| - 0.33 10.1 2.9 0.91 8.7 2.0 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger ADH_N PF08240.7 gi|344211015|ref|YP_004795335.1| - 2.7e-23 81.8 0.2 4.9e-23 80.9 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|344211015|ref|YP_004795335.1| - 3.7e-23 81.4 1.4 2e-22 79.1 0.3 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|344211015|ref|YP_004795335.1| - 1.5e-15 58.2 1.3 3.5e-15 57.0 0.1 2.1 2 1 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|344211015|ref|YP_004795335.1| - 0.039 13.1 4.3 0.12 11.5 3.0 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Usp PF00582.21 gi|344211016|ref|YP_004795336.1| - 2.1e-25 89.5 1.3 2.4e-25 89.3 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|344211016|ref|YP_004795336.1| - 0.01 15.1 0.2 0.013 14.7 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Methyltransf_18 PF12847.2 gi|344211016|ref|YP_004795336.1| - 0.073 13.6 0.5 0.11 13.0 0.4 1.3 1 1 0 1 1 1 0 Methyltransferase domain Usp PF00582.21 gi|344211017|ref|YP_004795337.1| - 2.1e-58 196.4 4.8 7.6e-30 103.9 0.1 2.0 2 0 0 2 2 2 2 Universal stress protein family DnaJ PF00226.26 gi|344211018|ref|YP_004795338.1| - 1.1e-10 41.1 0.0 1.7e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain PAC2 PF09754.4 gi|344211019|ref|YP_004795339.1| - 5.4e-53 180.0 0.1 6.3e-53 179.8 0.1 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.7 gi|344211020|ref|YP_004795340.1| - 5.1e-25 86.9 0.3 5.6e-25 86.8 0.2 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family EIF_2_alpha PF07541.7 gi|344211021|ref|YP_004795341.1| - 2.6e-32 110.9 0.0 4.5e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|344211021|ref|YP_004795341.1| - 1.3e-15 57.1 1.6 1.8e-15 56.7 0.4 1.7 2 0 0 2 2 2 1 S1 RNA binding domain cwf21 PF08312.7 gi|344211021|ref|YP_004795341.1| - 0.066 13.0 0.5 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 cwf21 domain Ribosomal_S27e PF01667.12 gi|344211022|ref|YP_004795342.1| - 6.2e-19 67.2 0.4 6.5e-19 67.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|344211022|ref|YP_004795342.1| - 0.00036 19.7 1.0 0.00052 19.2 0.7 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF2387 PF09526.5 gi|344211022|ref|YP_004795342.1| - 0.0073 16.1 0.5 0.0099 15.7 0.3 1.2 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.5 gi|344211022|ref|YP_004795342.1| - 0.025 14.5 2.0 0.04 13.8 1.4 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.8 gi|344211022|ref|YP_004795342.1| - 0.028 13.9 0.6 0.24 10.8 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain HypA PF01155.14 gi|344211022|ref|YP_004795342.1| - 0.028 14.0 0.5 0.032 13.9 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|344211022|ref|YP_004795342.1| - 0.03 14.2 0.8 0.038 13.8 0.6 1.1 1 0 0 1 1 1 0 IBR domain CpXC PF14353.1 gi|344211022|ref|YP_004795342.1| - 0.035 14.0 1.5 0.91 9.4 0.1 2.1 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.1 gi|344211022|ref|YP_004795342.1| - 0.037 13.7 2.9 0.24 11.0 2.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344211022|ref|YP_004795342.1| - 0.039 13.5 2.9 0.23 11.0 2.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|344211022|ref|YP_004795342.1| - 0.044 13.4 0.3 0.061 12.9 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS91 PF14319.1 gi|344211022|ref|YP_004795342.1| - 0.068 12.6 0.2 0.071 12.6 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc-ribbons_6 PF07191.7 gi|344211022|ref|YP_004795342.1| - 0.071 12.9 0.6 0.094 12.5 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons Rubredoxin PF00301.15 gi|344211022|ref|YP_004795342.1| - 0.12 12.2 0.5 11 5.9 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|344211022|ref|YP_004795342.1| - 0.16 11.8 1.1 0.35 10.6 0.8 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|344211022|ref|YP_004795342.1| - 0.17 11.6 1.9 0.31 10.8 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|344211022|ref|YP_004795342.1| - 0.18 11.1 2.1 3.9 6.8 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) A2L_zn_ribbon PF08792.5 gi|344211022|ref|YP_004795342.1| - 0.19 11.2 2.3 8.1 6.0 0.3 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|344211022|ref|YP_004795342.1| - 0.19 11.3 2.9 11 5.7 2.0 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.1 gi|344211022|ref|YP_004795342.1| - 0.31 11.3 2.9 0.45 10.8 2.0 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|344211022|ref|YP_004795342.1| - 0.54 9.5 3.3 2.2 7.5 2.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|344211022|ref|YP_004795342.1| - 0.65 9.7 5.4 2.2 8.0 3.8 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF3797 PF12677.2 gi|344211022|ref|YP_004795342.1| - 0.65 9.6 3.2 1.7 8.3 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF329 PF03884.9 gi|344211022|ref|YP_004795342.1| - 0.83 9.2 3.2 2.5 7.7 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-HYPF PF07503.7 gi|344211022|ref|YP_004795342.1| - 2.6 7.5 5.0 8.1 5.9 0.1 2.1 2 0 0 2 2 2 0 HypF finger Ribosomal_L44 PF00935.14 gi|344211023|ref|YP_004795343.1| - 1e-28 99.0 1.9 1.3e-28 98.8 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|344211023|ref|YP_004795343.1| - 0.0023 16.3 0.4 0.0027 16.1 0.3 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DUF2296 PF10058.4 gi|344211023|ref|YP_004795343.1| - 0.0048 16.5 1.1 1.9 8.3 0.0 2.3 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) WCCH PF03716.9 gi|344211023|ref|YP_004795343.1| - 0.012 15.0 2.8 0.021 14.2 1.9 1.4 1 0 0 1 1 1 0 WCCH motif zf-ribbon_3 PF13248.1 gi|344211023|ref|YP_004795343.1| - 0.013 14.7 0.7 2.4 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|344211023|ref|YP_004795343.1| - 0.013 15.7 0.1 0.024 14.9 0.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|344211023|ref|YP_004795343.1| - 0.022 14.5 2.7 0.07 12.9 1.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF3133 PF11331.3 gi|344211023|ref|YP_004795343.1| - 0.038 13.5 0.9 0.096 12.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Zn_Tnp_IS1595 PF12760.2 gi|344211023|ref|YP_004795343.1| - 0.043 13.6 1.9 3.1 7.6 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|344211023|ref|YP_004795343.1| - 0.043 13.6 0.9 0.067 13.0 0.6 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ISL3 PF14690.1 gi|344211023|ref|YP_004795343.1| - 0.064 13.2 2.5 5 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-UBR PF02207.15 gi|344211023|ref|YP_004795343.1| - 0.079 12.6 1.5 2.5 7.8 0.2 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zinc_ribbon_2 PF13240.1 gi|344211023|ref|YP_004795343.1| - 0.086 12.3 4.8 2.3 7.7 1.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344211023|ref|YP_004795343.1| - 0.086 12.8 2.4 6.3 6.8 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain F-112 PF09645.5 gi|344211023|ref|YP_004795343.1| - 0.14 12.0 0.1 0.19 11.6 0.1 1.2 1 0 0 1 1 1 0 F-112 protein Cys_rich_CPXG PF14255.1 gi|344211023|ref|YP_004795343.1| - 0.19 11.5 0.2 0.19 11.5 0.2 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_L33 PF00471.15 gi|344211023|ref|YP_004795343.1| - 1.5 9.0 5.4 0.24 11.6 1.0 1.7 2 0 0 2 2 2 0 Ribosomal protein L33 DUF2298 PF10060.4 gi|344211026|ref|YP_004795346.1| - 9.2e-145 483.0 23.6 1.6e-144 482.3 16.4 1.3 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) Glycos_transf_2 PF00535.21 gi|344211027|ref|YP_004795347.1| - 3e-11 43.2 0.0 4.1e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211027|ref|YP_004795347.1| - 0.0015 18.3 0.4 0.0045 16.8 0.3 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|344211027|ref|YP_004795347.1| - 0.034 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 GtrA PF04138.9 gi|344211028|ref|YP_004795348.1| - 1.1e-20 73.6 7.4 1.6e-20 73.2 5.1 1.2 1 0 0 1 1 1 1 GtrA-like protein Virul_fac_BrkB PF03631.10 gi|344211029|ref|YP_004795349.1| - 0.0059 16.0 6.9 0.0075 15.6 4.8 1.0 1 0 0 1 1 1 1 Virulence factor BrkB ABC2_membrane_5 PF13346.1 gi|344211029|ref|YP_004795349.1| - 0.013 14.8 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1345 PF07077.6 gi|344211029|ref|YP_004795349.1| - 0.017 14.6 1.4 0.021 14.3 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1345) MHYT PF03707.11 gi|344211029|ref|YP_004795349.1| - 0.31 11.1 7.2 0.52 10.4 1.2 2.5 2 1 1 3 3 3 0 Bacterial signalling protein N terminal repeat PAP2 PF01569.16 gi|344211029|ref|YP_004795349.1| - 3.3 7.3 5.5 4.2 7.0 3.8 1.1 1 0 0 1 1 1 0 PAP2 superfamily Pribosyltran PF00156.22 gi|344211030|ref|YP_004795350.1| - 2.6e-15 56.2 0.8 3.4e-15 55.8 0.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|344211030|ref|YP_004795350.1| - 0.0013 17.9 0.2 0.0014 17.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase AIRC PF00731.15 gi|344211030|ref|YP_004795350.1| - 0.054 12.7 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 AIR carboxylase DUF945 PF06097.6 gi|344211030|ref|YP_004795350.1| - 0.1 11.3 0.0 0.13 11.0 0.0 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DUF4579 PF15158.1 gi|344211031|ref|YP_004795351.1| - 0.15 11.5 0.2 0.66 9.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4579) Myosin_N PF02736.14 gi|344211032|ref|YP_004795352.1| - 0.12 12.1 1.6 6 6.6 0.2 2.5 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Oxidored_q1 PF00361.15 gi|344211033|ref|YP_004795353.1| - 4.9e-41 140.7 6.6 4.9e-41 140.7 4.6 1.8 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Arif-1 PF06770.6 gi|344211033|ref|YP_004795353.1| - 0.081 12.2 4.4 0.071 12.4 0.2 2.3 2 0 0 2 2 2 0 Actin-rearrangement-inducing factor (Arif-1) Oxidored_q1 PF00361.15 gi|344211034|ref|YP_004795354.1| - 7.2e-58 195.9 1.5 1.1e-57 195.3 0.4 1.8 1 1 1 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|344211034|ref|YP_004795354.1| - 0.00097 18.6 0.0 0.0029 17.1 0.0 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|344211035|ref|YP_004795355.1| - 7.6e-50 169.6 12.1 7.6e-50 169.6 8.4 1.8 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|344211035|ref|YP_004795355.1| - 2.7e-08 33.2 9.3 2.7e-08 33.2 6.4 2.9 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|344211036|ref|YP_004795356.1| - 1.4e-23 82.3 0.8 1.6e-23 82.0 0.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Na_H_Exchanger PF00999.16 gi|344211036|ref|YP_004795356.1| - 0.0013 17.3 1.9 0.0016 17.0 1.3 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Ion_trans_2 PF07885.11 gi|344211036|ref|YP_004795356.1| - 1.6 8.5 5.2 12 5.7 0.2 2.2 2 0 0 2 2 2 0 Ion channel MnhB PF04039.8 gi|344211037|ref|YP_004795357.1| - 3.6e-21 75.4 19.1 4.9e-21 75.0 13.2 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF4040 PF13244.1 gi|344211038|ref|YP_004795358.1| - 3.7e-21 74.8 8.0 3.7e-21 74.8 5.6 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.15 gi|344211038|ref|YP_004795358.1| - 0.023 14.5 3.3 0.033 13.9 2.3 1.4 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PhaG_MnhG_YufB PF03334.9 gi|344211039|ref|YP_004795359.1| - 1.1e-25 89.4 7.5 1.3e-25 89.2 5.2 1.0 1 0 0 1 1 1 1 Na+/H+ antiporter subunit EII-Sor PF03609.9 gi|344211039|ref|YP_004795359.1| - 0.033 13.4 5.4 0.037 13.3 3.7 1.0 1 0 0 1 1 1 0 PTS system sorbose-specific iic component TRC8_N PF13705.1 gi|344211039|ref|YP_004795359.1| - 0.12 10.8 0.5 0.14 10.7 0.3 1.0 1 0 0 1 1 1 0 TRC8 N-terminal domain MrpF_PhaF PF04066.8 gi|344211040|ref|YP_004795360.1| - 1.4e-16 60.4 2.9 1.4e-16 60.4 2.0 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) 3Beta_HSD PF01073.14 gi|344211040|ref|YP_004795360.1| - 0.04 12.6 0.1 0.046 12.4 0.0 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF2105 PF09878.4 gi|344211040|ref|YP_004795360.1| - 0.042 13.4 1.8 0.046 13.2 1.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) MNHE PF01899.11 gi|344211041|ref|YP_004795361.1| - 1.1e-29 103.0 0.3 1.6e-29 102.5 0.2 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Usp PF00582.21 gi|344211041|ref|YP_004795361.1| - 0.028 14.6 1.3 0.061 13.5 0.9 1.5 1 0 0 1 1 1 0 Universal stress protein family DFP PF04127.10 gi|344211042|ref|YP_004795362.1| - 2.7e-52 177.0 4.0 1.1e-51 175.0 0.4 2.4 3 0 0 3 3 3 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|344211042|ref|YP_004795362.1| - 4.6e-26 90.9 0.4 1.1e-25 89.7 0.1 1.8 2 0 0 2 2 2 1 Flavoprotein PALP PF00291.20 gi|344211042|ref|YP_004795362.1| - 0.028 13.6 3.4 0.029 13.6 0.9 1.8 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme NAD_binding_10 PF13460.1 gi|344211042|ref|YP_004795362.1| - 1 9.3 9.4 0.062 13.2 1.0 2.8 2 2 0 3 3 3 0 NADH(P)-binding Glyco_trans_4_4 PF13579.1 gi|344211042|ref|YP_004795362.1| - 2.2 8.3 13.6 1e+02 2.9 1.4 3.5 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain DUF58 PF01882.13 gi|344211044|ref|YP_004795364.1| - 1.1e-13 51.0 0.1 4.2e-13 49.2 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|344211044|ref|YP_004795364.1| - 2.7e-09 36.9 2.3 2.7e-09 36.9 1.6 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|344211044|ref|YP_004795364.1| - 1.1e-06 27.9 0.1 1.9e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|344211044|ref|YP_004795364.1| - 3.9e-05 23.6 2.4 6.9e-05 22.8 0.2 2.4 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|344211044|ref|YP_004795364.1| - 0.00011 22.2 0.0 0.00023 21.1 0.0 1.6 1 0 0 1 1 1 1 CARDB DUF4129 PF13559.1 gi|344211046|ref|YP_004795366.1| - 6.2e-13 48.5 5.6 6.2e-13 48.5 3.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Peptidase_M48 PF01435.13 gi|344211047|ref|YP_004795367.1| - 1.6e-29 103.1 0.0 1.8e-18 66.9 0.0 2.1 2 0 0 2 2 2 2 Peptidase family M48 Peptidase_M56 PF05569.6 gi|344211047|ref|YP_004795367.1| - 1.2e-05 24.4 0.7 0.00012 21.2 0.3 2.2 1 1 1 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|344211047|ref|YP_004795367.1| - 0.0081 16.2 0.0 0.021 14.8 0.0 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily SprT-like PF10263.4 gi|344211047|ref|YP_004795367.1| - 0.054 13.1 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 SprT-like family FAD_binding_2 PF00890.19 gi|344211048|ref|YP_004795368.1| - 1.9e-10 40.1 3.7 1.9e-05 23.6 1.1 2.5 1 1 2 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|344211048|ref|YP_004795368.1| - 1.8e-09 37.7 0.5 2.7e-05 24.1 0.1 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|344211048|ref|YP_004795368.1| - 4.1e-09 35.8 4.2 0.001 18.0 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|344211048|ref|YP_004795368.1| - 7.5e-05 21.7 0.1 0.00014 20.8 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|344211048|ref|YP_004795368.1| - 0.00017 21.5 0.2 0.0087 16.0 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344211048|ref|YP_004795368.1| - 0.00019 20.0 0.0 0.0039 15.7 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.7 gi|344211048|ref|YP_004795368.1| - 0.00025 20.0 0.0 0.036 12.9 0.1 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|344211048|ref|YP_004795368.1| - 0.00048 20.2 1.0 0.089 12.8 0.0 2.3 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344211048|ref|YP_004795368.1| - 0.0009 18.4 1.1 0.0016 17.6 0.8 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344211048|ref|YP_004795368.1| - 0.0012 17.9 1.0 0.002 17.3 0.2 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|344211048|ref|YP_004795368.1| - 0.0018 18.6 0.0 0.015 15.6 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|344211048|ref|YP_004795368.1| - 0.0023 16.6 0.2 1 7.8 0.4 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|344211048|ref|YP_004795368.1| - 0.018 14.7 2.7 0.74 9.5 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|344211048|ref|YP_004795368.1| - 0.036 13.7 0.1 0.61 9.7 0.0 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|344211048|ref|YP_004795368.1| - 0.04 12.9 1.8 0.097 11.7 1.0 1.7 1 1 1 2 2 2 0 FAD binding domain AAA PF00004.24 gi|344211049|ref|YP_004795369.1| - 1.6e-44 151.2 0.1 1.6e-44 151.2 0.0 2.2 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|344211049|ref|YP_004795369.1| - 2.3e-09 37.3 2.5 3e-09 37.0 0.0 2.5 3 0 0 3 3 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|344211049|ref|YP_004795369.1| - 1.6e-07 30.5 0.1 4.5e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|344211049|ref|YP_004795369.1| - 4.2e-06 26.5 0.3 5.9e-05 22.8 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|344211049|ref|YP_004795369.1| - 4.5e-06 27.4 1.4 1.4e-05 25.8 0.0 2.4 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|344211049|ref|YP_004795369.1| - 1.3e-05 25.3 3.6 0.00015 21.9 0.1 3.2 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|344211049|ref|YP_004795369.1| - 3e-05 24.1 7.6 7.6e-05 22.7 0.1 3.8 2 2 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|344211049|ref|YP_004795369.1| - 0.00019 21.1 0.2 0.021 14.5 0.0 2.5 1 1 0 2 2 2 1 NACHT domain AAA_33 PF13671.1 gi|344211049|ref|YP_004795369.1| - 0.0002 21.2 0.1 0.0014 18.5 0.0 2.3 1 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|344211049|ref|YP_004795369.1| - 0.00026 20.8 0.1 0.0011 18.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|344211049|ref|YP_004795369.1| - 0.00029 19.6 0.9 0.00072 18.3 0.0 2.1 2 1 0 2 2 2 1 TIP49 C-terminus AAA_19 PF13245.1 gi|344211049|ref|YP_004795369.1| - 0.00034 20.3 0.1 0.00098 18.8 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|344211049|ref|YP_004795369.1| - 0.00041 19.3 0.0 0.0012 17.8 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF815) GrpE PF01025.14 gi|344211049|ref|YP_004795369.1| - 0.00066 19.2 5.8 0.00066 19.2 4.0 2.4 3 0 0 3 3 2 1 GrpE IstB_IS21 PF01695.12 gi|344211049|ref|YP_004795369.1| - 0.0014 18.0 0.2 0.0039 16.6 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|344211049|ref|YP_004795369.1| - 0.0017 17.9 0.2 0.03 13.9 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|344211049|ref|YP_004795369.1| - 0.0018 17.7 0.2 0.036 13.5 0.1 2.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|344211049|ref|YP_004795369.1| - 0.002 17.3 0.0 0.0061 15.7 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|344211049|ref|YP_004795369.1| - 0.0038 17.5 3.1 0.013 15.7 0.0 2.8 2 1 0 2 2 2 1 AAA domain ATG16 PF08614.6 gi|344211049|ref|YP_004795369.1| - 0.0038 17.0 9.3 0.0038 17.0 6.5 2.5 2 0 0 2 2 2 1 Autophagy protein 16 (ATG16) Zeta_toxin PF06414.7 gi|344211049|ref|YP_004795369.1| - 0.0043 16.1 0.4 0.012 14.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|344211049|ref|YP_004795369.1| - 0.0048 16.8 1.0 0.015 15.2 0.0 2.5 2 1 1 3 3 2 1 AAA domain RNA_helicase PF00910.17 gi|344211049|ref|YP_004795369.1| - 0.014 15.5 0.0 0.044 13.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Torsin PF06309.6 gi|344211049|ref|YP_004795369.1| - 0.016 15.0 0.1 0.049 13.5 0.0 1.8 2 0 0 2 2 1 0 Torsin bZIP_1 PF00170.16 gi|344211049|ref|YP_004795369.1| - 0.016 15.1 13.0 0.12 12.2 3.7 2.6 1 1 1 2 2 2 0 bZIP transcription factor TUDOR PF00567.19 gi|344211049|ref|YP_004795369.1| - 0.016 15.0 1.4 0.025 14.4 0.0 2.0 2 0 0 2 2 1 0 Tudor domain CPT PF07931.7 gi|344211049|ref|YP_004795369.1| - 0.024 14.2 0.1 0.057 13.0 0.0 1.8 2 0 0 2 2 1 0 Chloramphenicol phosphotransferase-like protein Sigma54_activ_2 PF14532.1 gi|344211049|ref|YP_004795369.1| - 0.026 14.5 1.8 0.046 13.7 0.0 2.5 3 1 0 3 3 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|344211049|ref|YP_004795369.1| - 0.03 13.9 4.4 0.13 11.7 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|344211049|ref|YP_004795369.1| - 0.035 13.5 9.2 0.13 11.5 0.1 3.4 3 1 1 4 4 4 0 AAA domain UPF0079 PF02367.12 gi|344211049|ref|YP_004795369.1| - 0.039 13.5 0.0 0.087 12.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF3373 PF11853.3 gi|344211049|ref|YP_004795369.1| - 0.042 12.3 3.0 0.08 11.4 2.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) NB-ARC PF00931.17 gi|344211049|ref|YP_004795369.1| - 0.044 12.6 3.4 0.053 12.3 0.0 2.5 3 0 0 3 3 2 0 NB-ARC domain KaiC PF06745.8 gi|344211049|ref|YP_004795369.1| - 0.047 12.8 4.5 0.76 8.8 0.0 3.4 2 1 1 3 3 3 0 KaiC ResIII PF04851.10 gi|344211049|ref|YP_004795369.1| - 0.051 13.4 2.4 1.9 8.2 0.0 2.5 1 1 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|344211049|ref|YP_004795369.1| - 0.055 13.1 4.8 0.45 10.2 0.1 3.3 2 2 1 4 4 4 0 NTPase AAA_24 PF13479.1 gi|344211049|ref|YP_004795369.1| - 0.059 12.9 0.4 0.27 10.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain Creatininase PF02633.9 gi|344211049|ref|YP_004795369.1| - 0.082 11.9 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase Fmp27_WPPW PF10359.4 gi|344211049|ref|YP_004795369.1| - 0.093 11.1 5.9 0.17 10.2 4.1 1.4 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain ABC_tran PF00005.22 gi|344211049|ref|YP_004795369.1| - 0.097 12.9 6.6 0.2 11.9 0.0 3.1 2 1 0 2 2 1 0 ABC transporter vATP-synt_E PF01991.13 gi|344211049|ref|YP_004795369.1| - 0.17 11.1 8.7 1.1 8.4 6.0 2.2 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit DUF2075 PF09848.4 gi|344211049|ref|YP_004795369.1| - 0.28 10.1 6.0 0.29 10.0 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ADIP PF11559.3 gi|344211049|ref|YP_004795369.1| - 0.48 10.3 12.3 0.075 12.9 5.6 1.8 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding IncA PF04156.9 gi|344211049|ref|YP_004795369.1| - 0.5 9.9 14.8 0.47 10.0 9.1 1.8 1 1 1 2 2 2 0 IncA protein TMF_DNA_bd PF12329.3 gi|344211049|ref|YP_004795369.1| - 0.82 9.5 12.2 3.2 7.6 8.5 2.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding V_ATPase_I PF01496.14 gi|344211049|ref|YP_004795369.1| - 1.5 6.6 5.2 2 6.1 3.6 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|344211049|ref|YP_004795369.1| - 1.5 9.1 12.3 6 7.2 8.0 2.4 2 1 0 2 2 1 0 Protein of unknown function (DUF904) SlyX PF04102.7 gi|344211049|ref|YP_004795369.1| - 2.8 8.3 8.5 0.98 9.8 2.4 2.7 1 1 0 1 1 1 0 SlyX Herpes_BLRF2 PF05812.7 gi|344211049|ref|YP_004795369.1| - 3.1 7.6 11.6 1.1 9.0 1.4 2.5 1 1 1 2 2 2 0 Herpesvirus BLRF2 protein APG6 PF04111.7 gi|344211049|ref|YP_004795369.1| - 5.3 5.9 14.0 7.2 5.5 9.0 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 AAA_23 PF13476.1 gi|344211049|ref|YP_004795369.1| - 6.4 7.0 0.0 6.4 7.0 0.0 2.7 2 1 0 2 2 1 0 AAA domain Atg14 PF10186.4 gi|344211049|ref|YP_004795369.1| - 8.2 5.2 9.7 13 4.5 6.5 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF420 PF04238.7 gi|344211050|ref|YP_004795370.1| - 3.3e-35 120.9 13.3 3.3e-35 120.9 9.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|344211050|ref|YP_004795370.1| - 0.0014 18.6 2.2 0.0014 18.6 1.6 2.9 2 1 1 3 3 3 1 Predicted membrane protein (DUF2306) DUF4084 PF13321.1 gi|344211050|ref|YP_004795370.1| - 0.0042 16.3 3.3 0.0055 15.9 2.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4084) Frag1 PF10277.4 gi|344211050|ref|YP_004795370.1| - 0.038 13.4 7.0 0.057 12.9 4.7 1.4 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family Cytochrom_B561 PF03188.11 gi|344211050|ref|YP_004795370.1| - 7 6.4 19.3 0.91 9.3 5.1 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 HD PF01966.17 gi|344211051|ref|YP_004795371.1| - 2.3e-09 37.2 1.3 2.3e-09 37.2 0.9 2.0 2 0 0 2 2 2 1 HD domain Clp_N PF02861.15 gi|344211051|ref|YP_004795371.1| - 0.035 14.0 0.3 4.8 7.1 0.0 2.9 2 0 0 2 2 2 0 Clp amino terminal domain Amidohydro_1 PF01979.15 gi|344211052|ref|YP_004795372.1| - 1.5e-21 77.3 0.0 1.2e-12 48.1 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|344211052|ref|YP_004795372.1| - 1.9e-09 37.9 8.1 7.3e-09 36.0 5.6 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|344211052|ref|YP_004795372.1| - 8.7e-08 31.8 0.0 1.8e-07 30.8 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|344211052|ref|YP_004795372.1| - 1.4e-07 30.7 0.0 2.2e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|344211052|ref|YP_004795372.1| - 0.0061 15.8 5.2 0.1 11.8 0.0 2.9 1 1 2 3 3 3 2 Amidohydrolase family SHOCT PF09851.4 gi|344211053|ref|YP_004795373.1| - 2.4e-07 29.9 0.9 4.6e-07 29.0 0.6 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|344211053|ref|YP_004795373.1| - 0.00048 19.8 0.2 0.0012 18.6 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) DUF1469 PF07332.6 gi|344211053|ref|YP_004795373.1| - 0.29 10.8 8.3 0.46 10.2 5.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) FA_desaturase PF00487.19 gi|344211053|ref|YP_004795373.1| - 0.35 10.2 1.6 0.42 10.0 1.1 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Usp PF00582.21 gi|344211054|ref|YP_004795374.1| - 7.7e-39 133.0 0.4 8.8e-39 132.8 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Transketolase_C PF02780.15 gi|344211054|ref|YP_004795374.1| - 0.0091 15.9 0.1 0.1 12.5 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain BPL_LplA_LipB PF03099.14 gi|344211055|ref|YP_004795375.1| - 2e-21 76.3 0.0 3.2e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|344211055|ref|YP_004795375.1| - 3.2e-11 42.7 0.1 8.8e-11 41.3 0.1 1.8 2 0 0 2 2 2 1 Biotin protein ligase C terminal domain HTH_11 PF08279.7 gi|344211055|ref|YP_004795375.1| - 3.7e-11 42.5 0.0 7.8e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|344211055|ref|YP_004795375.1| - 2.7e-06 26.6 0.0 5e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|344211055|ref|YP_004795375.1| - 9.2e-06 25.3 0.0 1.8e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344211055|ref|YP_004795375.1| - 3e-05 23.5 0.0 5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344211055|ref|YP_004795375.1| - 0.0011 18.5 0.1 0.004 16.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|344211055|ref|YP_004795375.1| - 0.016 14.8 0.0 0.043 13.4 0.0 1.7 2 0 0 2 2 1 0 Homeodomain-like domain DUF1702 PF08012.6 gi|344211055|ref|YP_004795375.1| - 0.017 13.7 0.0 0.028 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1702) HTH_AsnC-type PF13404.1 gi|344211055|ref|YP_004795375.1| - 0.043 13.3 0.3 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|344211055|ref|YP_004795375.1| - 0.053 13.2 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.22 gi|344211055|ref|YP_004795375.1| - 0.06 13.0 0.9 0.56 9.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_39 PF14090.1 gi|344211055|ref|YP_004795375.1| - 0.14 11.6 0.0 0.57 9.6 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain CPSase_L_D2 PF02786.12 gi|344211056|ref|YP_004795376.1| - 3.4e-68 229.1 0.1 6.8e-68 228.1 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.14 gi|344211056|ref|YP_004795376.1| - 8.8e-33 112.4 0.0 2e-32 111.3 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain CPSase_L_chain PF00289.17 gi|344211056|ref|YP_004795376.1| - 1.4e-25 89.5 0.1 3.4e-25 88.2 0.1 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_lipoyl PF00364.17 gi|344211056|ref|YP_004795376.1| - 4.2e-19 67.9 4.2 4.2e-19 67.9 2.9 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|344211056|ref|YP_004795376.1| - 6.2e-14 52.1 0.2 1.4e-13 51.0 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|344211056|ref|YP_004795376.1| - 1.9e-12 46.6 3.6 6.8e-08 32.0 0.0 3.0 2 1 1 3 3 2 2 Biotin-lipoyl like ATPgrasp_Ter PF15632.1 gi|344211056|ref|YP_004795376.1| - 1.6e-10 40.2 0.0 2.7e-08 32.9 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon HlyD PF00529.15 gi|344211056|ref|YP_004795376.1| - 1.6e-06 27.6 0.8 0.0002 20.7 0.1 2.5 1 1 1 2 2 2 1 HlyD family secretion protein ATP-grasp PF02222.17 gi|344211056|ref|YP_004795376.1| - 6.2e-06 25.6 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|344211056|ref|YP_004795376.1| - 8.1e-06 25.5 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_2 PF12700.2 gi|344211056|ref|YP_004795376.1| - 6.4e-05 22.2 0.7 0.0021 17.2 0.1 2.3 1 1 1 2 2 2 1 HlyD family secretion protein Dala_Dala_lig_C PF07478.8 gi|344211056|ref|YP_004795376.1| - 0.00029 20.3 0.1 0.00078 18.8 0.0 1.7 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus HlyD_3 PF13437.1 gi|344211056|ref|YP_004795376.1| - 0.00056 20.2 0.1 0.54 10.6 0.0 2.7 2 0 0 2 2 2 2 HlyD family secretion protein GCV_H PF01597.14 gi|344211056|ref|YP_004795376.1| - 0.0039 16.8 1.5 0.011 15.3 1.0 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein RimK PF08443.6 gi|344211056|ref|YP_004795376.1| - 0.0098 15.3 0.0 0.45 9.9 0.0 2.2 2 0 0 2 2 2 1 RimK-like ATP-grasp domain QRPTase_N PF02749.11 gi|344211056|ref|YP_004795376.1| - 0.054 13.3 0.7 0.77 9.6 0.2 2.6 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain PTS_EIIA_1 PF00358.15 gi|344211056|ref|YP_004795376.1| - 0.067 12.7 1.0 0.33 10.5 0.1 2.5 3 1 1 4 4 4 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YqfD PF06898.6 gi|344211056|ref|YP_004795376.1| - 0.17 10.5 1.3 0.46 9.1 0.1 2.0 2 0 0 2 2 2 0 Putative stage IV sporulation protein YqfD Ribosomal_60s PF00428.14 gi|344211057|ref|YP_004795377.1| - 2.3 8.6 10.9 4 7.9 7.5 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein Carboxyl_trans PF01039.17 gi|344211058|ref|YP_004795378.1| - 3.1e-198 659.1 0.1 3.5e-198 658.9 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|344211058|ref|YP_004795378.1| - 0.0064 15.7 0.1 0.044 12.9 0.0 2.1 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) UDG PF03167.14 gi|344211059|ref|YP_004795379.1| - 4.3e-10 39.2 0.0 5e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MarR_2 PF12802.2 gi|344211060|ref|YP_004795380.1| - 2.3e-06 27.1 1.2 3.8e-06 26.4 0.2 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|344211060|ref|YP_004795380.1| - 3.9e-05 23.2 0.0 0.0001 21.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|344211060|ref|YP_004795380.1| - 0.00019 21.0 0.0 0.00036 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344211060|ref|YP_004795380.1| - 0.0018 18.0 0.7 0.048 13.4 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344211060|ref|YP_004795380.1| - 0.0025 17.1 0.0 0.006 15.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344211060|ref|YP_004795380.1| - 0.0028 17.1 0.1 0.0028 17.1 0.1 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain Trp_repressor PF01371.14 gi|344211060|ref|YP_004795380.1| - 0.0049 16.7 0.1 0.024 14.5 0.0 2.1 3 0 0 3 3 3 1 Trp repressor protein HTH_27 PF13463.1 gi|344211060|ref|YP_004795380.1| - 0.0095 16.2 0.0 0.027 14.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|344211060|ref|YP_004795380.1| - 0.015 15.2 0.1 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|344211060|ref|YP_004795380.1| - 0.019 14.5 0.0 0.062 12.9 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain FeoA PF04023.9 gi|344211060|ref|YP_004795380.1| - 0.074 13.0 0.5 0.25 11.3 0.2 2.1 2 1 0 2 2 2 0 FeoA domain DUF1724 PF08350.5 gi|344211060|ref|YP_004795380.1| - 0.14 11.6 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) EamA PF00892.15 gi|344211061|ref|YP_004795381.1| - 7.8e-33 113.1 33.2 9.1e-18 64.5 5.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|344211061|ref|YP_004795381.1| - 2.1e-09 37.5 4.1 2.1e-09 37.5 2.9 3.5 1 1 3 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|344211061|ref|YP_004795381.1| - 0.0012 18.4 19.9 0.0035 16.9 1.9 2.4 2 1 0 2 2 2 2 Triose-phosphate Transporter family SNF PF00209.13 gi|344211062|ref|YP_004795382.1| - 2.9e-49 167.9 31.5 2.7e-25 88.8 10.9 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family adh_short PF00106.20 gi|344211064|ref|YP_004795384.1| - 1.4e-22 80.4 0.1 2.3e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344211064|ref|YP_004795384.1| - 6.2e-17 62.1 0.0 3.4e-16 59.7 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|344211064|ref|YP_004795384.1| - 1e-07 31.6 0.1 3.1e-07 30.0 0.0 1.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|344211064|ref|YP_004795384.1| - 4.1e-06 26.5 0.8 1.4e-05 24.8 0.6 1.8 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|344211064|ref|YP_004795384.1| - 0.0052 16.8 0.7 0.0098 15.9 0.5 1.5 1 1 0 1 1 1 1 NADH(P)-binding ADH_zinc_N PF00107.21 gi|344211065|ref|YP_004795385.1| - 6.5e-15 54.8 0.4 1.1e-14 54.1 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|344211065|ref|YP_004795385.1| - 2.6e-13 50.9 2.0 4.9e-13 50.0 0.3 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|344211065|ref|YP_004795385.1| - 1.1e-11 44.4 0.0 2.9e-09 36.6 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain Gly_rich_SFCGS PF14272.1 gi|344211065|ref|YP_004795385.1| - 0.094 12.5 0.7 0.24 11.2 0.5 1.7 1 0 0 1 1 1 0 Glycine-rich SFCGS MCPsignal PF00015.16 gi|344211066|ref|YP_004795386.1| - 6.1e-51 172.9 28.4 6.1e-51 172.9 19.7 4.3 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344211066|ref|YP_004795386.1| - 2e-12 47.0 1.7 2e-12 47.0 1.2 5.8 5 1 0 5 5 4 1 HAMP domain PspB PF06667.7 gi|344211066|ref|YP_004795386.1| - 0.0025 17.7 1.9 0.63 10.0 0.1 3.8 2 0 0 2 2 2 1 Phage shock protein B DUF948 PF06103.6 gi|344211066|ref|YP_004795386.1| - 0.004 16.9 37.5 0.061 13.1 1.0 6.5 3 2 3 6 6 6 2 Bacterial protein of unknown function (DUF948) Cache_3 PF14827.1 gi|344211066|ref|YP_004795386.1| - 0.011 15.6 0.0 0.011 15.6 0.0 3.9 3 1 1 4 4 3 0 Sensory domain of two-component sensor kinase DUF1664 PF07889.7 gi|344211066|ref|YP_004795386.1| - 0.13 12.0 28.1 1.9 8.3 0.8 5.8 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) Spc7 PF08317.6 gi|344211066|ref|YP_004795386.1| - 0.19 10.3 26.3 0.61 8.6 4.7 3.5 2 1 1 3 3 3 0 Spc7 kinetochore protein YojJ PF10372.4 gi|344211066|ref|YP_004795386.1| - 0.27 11.1 6.1 0.7 9.8 0.1 3.8 3 1 1 4 4 4 0 Bacterial membrane-spanning protein N-terminus Laminin_II PF06009.7 gi|344211066|ref|YP_004795386.1| - 0.37 10.5 40.7 0.85 9.3 1.0 5.6 2 2 2 5 5 5 0 Laminin Domain II DUF3584 PF12128.3 gi|344211066|ref|YP_004795386.1| - 0.43 7.8 36.3 1.1 6.4 25.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) CorA PF01544.13 gi|344211066|ref|YP_004795386.1| - 1.1 8.2 18.9 0.083 11.9 0.8 4.1 2 1 2 4 4 4 0 CorA-like Mg2+ transporter protein Alpha-2-MRAP_C PF06401.6 gi|344211066|ref|YP_004795386.1| - 1.2 8.9 6.4 9.7 5.9 0.2 3.4 2 1 1 3 3 3 0 Alpha-2-macroglobulin RAP, C-terminal domain LOH1CR12 PF10158.4 gi|344211066|ref|YP_004795386.1| - 1.3 8.7 14.4 1.1 9.1 0.8 4.3 2 2 3 5 5 5 0 Tumour suppressor protein TMP_2 PF06791.8 gi|344211066|ref|YP_004795386.1| - 2.9 7.4 38.5 0.02 14.5 5.8 3.8 1 1 2 3 3 3 0 Prophage tail length tape measure protein Prominin PF05478.6 gi|344211066|ref|YP_004795386.1| - 3.6 4.9 18.6 1.1 6.6 0.5 3.1 1 1 1 3 3 3 0 Prominin Bac_rhodopsin PF01036.13 gi|344211067|ref|YP_004795387.1| - 1.6e-63 214.0 27.8 1.8e-63 213.8 19.3 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Kei1 PF08552.6 gi|344211068|ref|YP_004795388.1| - 0.0024 17.5 0.0 0.0025 17.4 0.0 1.0 1 0 0 1 1 1 1 Inositolphosphorylceramide synthase subunit Kei1 RDD PF06271.7 gi|344211068|ref|YP_004795388.1| - 7.6 6.4 7.5 11 5.8 5.2 1.3 1 1 0 1 1 1 0 RDD family TFIIB PF00382.14 gi|344211069|ref|YP_004795389.1| - 4.4e-50 167.3 2.2 1.5e-25 88.8 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344211069|ref|YP_004795389.1| - 1.4e-14 53.0 3.9 2.6e-14 52.2 2.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|344211069|ref|YP_004795389.1| - 0.0025 17.3 0.1 0.0094 15.5 0.0 1.9 2 0 0 2 2 2 1 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|344211069|ref|YP_004795389.1| - 0.016 14.8 3.1 0.017 14.7 0.7 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|344211069|ref|YP_004795389.1| - 0.033 13.3 0.6 0.055 12.6 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HTH_23 PF13384.1 gi|344211069|ref|YP_004795389.1| - 0.048 13.3 0.5 0.59 9.8 0.0 2.9 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|344211069|ref|YP_004795389.1| - 0.06 12.6 1.0 0.3 10.4 0.0 2.7 3 1 0 3 3 3 0 Sigma-70, region 4 DUF2318 PF10080.4 gi|344211069|ref|YP_004795389.1| - 0.1 12.3 0.2 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Cyclin_C PF02984.14 gi|344211069|ref|YP_004795389.1| - 0.15 11.9 0.1 8.8 6.2 0.0 2.3 1 1 1 2 2 2 0 Cyclin, C-terminal domain SpoU_methylase PF00588.14 gi|344211071|ref|YP_004795391.1| - 4.1e-28 98.0 0.0 5.6e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family PAS_4 PF08448.5 gi|344211072|ref|YP_004795392.1| - 1.3e-24 86.2 1.2 9e-14 51.4 0.1 3.3 3 0 0 3 3 3 2 PAS fold HTH_10 PF04967.7 gi|344211072|ref|YP_004795392.1| - 1.9e-17 62.5 0.0 4.6e-17 61.3 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.1 gi|344211072|ref|YP_004795392.1| - 1.4e-15 57.5 0.5 2.4e-08 34.1 0.0 3.3 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.1 gi|344211072|ref|YP_004795392.1| - 4.5e-15 55.9 0.0 1.8e-09 37.8 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|344211072|ref|YP_004795392.1| - 3e-14 53.7 3.4 3.5e-07 30.8 0.1 3.0 3 0 0 3 3 2 2 GAF domain GAF PF01590.21 gi|344211072|ref|YP_004795392.1| - 4.1e-13 49.7 3.3 1.2e-08 35.2 0.0 3.1 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|344211072|ref|YP_004795392.1| - 1.7e-10 40.6 0.0 1.6e-07 31.0 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|344211072|ref|YP_004795392.1| - 8.6e-05 22.7 0.0 0.092 13.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain HTH_20 PF12840.2 gi|344211072|ref|YP_004795392.1| - 0.0034 17.1 0.3 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344211072|ref|YP_004795392.1| - 0.0037 16.6 0.0 0.0082 15.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|344211072|ref|YP_004795392.1| - 0.0062 16.0 0.0 0.023 14.2 0.0 2.0 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.14 gi|344211072|ref|YP_004795392.1| - 0.039 13.5 0.0 0.089 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.1 gi|344211072|ref|YP_004795392.1| - 0.045 13.2 0.1 0.29 10.7 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain PAS_3 PF08447.6 gi|344211072|ref|YP_004795392.1| - 0.07 13.2 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 1 0 PAS fold HxlR PF01638.12 gi|344211073|ref|YP_004795393.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix IstB_IS21_ATP PF08483.6 gi|344211074|ref|YP_004795394.1| - 0.17 11.5 0.1 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding N-terminal GatB_N PF02934.10 gi|344211075|ref|YP_004795395.1| - 4.8e-72 242.2 0.0 6.8e-72 241.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|344211075|ref|YP_004795395.1| - 8.4e-20 70.9 0.0 1.4e-19 70.2 0.0 1.4 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|344211075|ref|YP_004795395.1| - 2.4e-14 53.2 0.0 4.5e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|344211075|ref|YP_004795395.1| - 0.019 14.8 0.2 0.034 14.0 0.1 1.4 1 0 0 1 1 1 0 Yqey-like protein FISNA PF14484.1 gi|344211076|ref|YP_004795396.1| - 0.067 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Fish-specific NACHT associated domain Metallophos_2 PF12850.2 gi|344211077|ref|YP_004795397.1| - 0.12 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Acetyltransf_1 PF00583.19 gi|344211078|ref|YP_004795398.1| - 1.5e-19 69.7 0.2 2.1e-19 69.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344211078|ref|YP_004795398.1| - 1.7e-17 63.6 0.0 2e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211078|ref|YP_004795398.1| - 5e-14 52.2 0.1 7e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211078|ref|YP_004795398.1| - 1.7e-12 47.5 0.0 2.1e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344211078|ref|YP_004795398.1| - 1.5e-09 37.7 0.0 2.5e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211078|ref|YP_004795398.1| - 9.1e-09 34.9 0.0 1.5e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|344211078|ref|YP_004795398.1| - 1.3e-06 28.4 0.0 1.5e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344211078|ref|YP_004795398.1| - 7.3e-06 26.2 0.0 9.1e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344211078|ref|YP_004795398.1| - 8e-05 22.5 0.2 0.00014 21.7 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|344211078|ref|YP_004795398.1| - 0.0015 18.1 0.0 0.002 17.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344211078|ref|YP_004795398.1| - 0.0049 16.7 0.0 0.0088 15.9 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF2156 PF09924.4 gi|344211078|ref|YP_004795398.1| - 0.015 14.1 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) Acetyltransf_13 PF13880.1 gi|344211078|ref|YP_004795398.1| - 0.021 14.5 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|344211078|ref|YP_004795398.1| - 0.066 12.5 0.0 0.085 12.1 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Mec-17 PF05301.6 gi|344211078|ref|YP_004795398.1| - 0.14 12.1 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Touch receptor neuron protein Mec-17 Lyase_1 PF00206.15 gi|344211079|ref|YP_004795399.1| - 3.7e-106 354.8 0.0 5.6e-106 354.2 0.0 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|344211079|ref|YP_004795399.1| - 3.6e-25 87.7 0.3 9.8e-25 86.3 0.2 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus ADSL_C PF10397.4 gi|344211079|ref|YP_004795399.1| - 0.0059 16.5 0.5 0.025 14.5 0.1 2.4 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus BPD_transp_1 PF00528.17 gi|344211080|ref|YP_004795400.1| - 5.1e-19 68.5 20.3 5.1e-19 68.5 14.0 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344211081|ref|YP_004795401.1| - 1.7e-13 50.4 18.1 1.7e-13 50.4 12.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MotA_ExbB PF01618.11 gi|344211081|ref|YP_004795401.1| - 1.3 8.6 4.7 0.35 10.4 0.7 1.9 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family ABC_tran PF00005.22 gi|344211082|ref|YP_004795402.1| - 8.3e-34 116.8 0.0 1.9e-33 115.6 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|344211082|ref|YP_004795402.1| - 5.7e-08 33.0 0.0 0.0032 17.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|344211082|ref|YP_004795402.1| - 1.7e-07 31.0 0.0 4.9e-07 29.6 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|344211082|ref|YP_004795402.1| - 9.9e-05 21.6 0.1 0.00029 20.1 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|344211082|ref|YP_004795402.1| - 0.00033 19.8 0.0 0.0011 18.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|344211082|ref|YP_004795402.1| - 0.00087 19.3 0.1 0.0019 18.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|344211082|ref|YP_004795402.1| - 0.0014 18.7 0.1 0.0035 17.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344211082|ref|YP_004795402.1| - 0.002 17.3 0.0 0.0057 15.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function, DUF258 TOBE PF03459.12 gi|344211082|ref|YP_004795402.1| - 0.0026 17.8 0.0 0.11 12.6 0.0 3.1 3 1 0 3 3 3 1 TOBE domain AAA_17 PF13207.1 gi|344211082|ref|YP_004795402.1| - 0.003 18.3 0.2 0.0089 16.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|344211082|ref|YP_004795402.1| - 0.011 14.4 0.0 0.018 13.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|344211082|ref|YP_004795402.1| - 0.012 14.9 0.0 0.13 11.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|344211082|ref|YP_004795402.1| - 0.017 14.5 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_29 PF13555.1 gi|344211082|ref|YP_004795402.1| - 0.026 14.0 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.13 gi|344211082|ref|YP_004795402.1| - 0.028 13.9 0.1 2.4 7.6 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.24 gi|344211082|ref|YP_004795402.1| - 0.031 14.4 0.0 0.15 12.2 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|344211082|ref|YP_004795402.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|344211082|ref|YP_004795402.1| - 0.068 13.4 0.1 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|344211082|ref|YP_004795402.1| - 0.1 12.3 0.1 0.73 9.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|344211082|ref|YP_004795402.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain XPG_I PF00867.13 gi|344211083|ref|YP_004795403.1| - 4.9e-23 80.9 0.0 9.1e-23 80.1 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|344211083|ref|YP_004795403.1| - 4e-12 46.2 0.0 6.8e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|344211083|ref|YP_004795403.1| - 6.7e-06 26.2 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.11 gi|344211083|ref|YP_004795403.1| - 0.0012 18.1 0.1 0.0025 17.2 0.0 1.5 1 1 0 1 1 1 1 5'-3' exonuclease, N-terminal resolvase-like domain Acetyltransf_1 PF00583.19 gi|344211084|ref|YP_004795404.1| - 7e-07 29.1 0.0 1.2e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344211084|ref|YP_004795404.1| - 0.017 15.2 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3054 PF11255.3 gi|344211085|ref|YP_004795405.1| - 2.9e-26 91.4 10.0 3.5e-26 91.2 6.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) PetG PF02529.10 gi|344211087|ref|YP_004795407.1| - 0.95 9.0 3.5 0.32 10.5 0.5 1.7 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 IncA PF04156.9 gi|344211087|ref|YP_004795407.1| - 1.1 8.8 8.0 1.4 8.5 5.6 1.1 1 0 0 1 1 1 0 IncA protein OCD_Mu_crystall PF02423.10 gi|344211088|ref|YP_004795408.1| - 1.5e-61 207.8 2.0 2.1e-61 207.4 1.4 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|344211088|ref|YP_004795408.1| - 0.0019 18.2 0.0 0.0031 17.6 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|344211088|ref|YP_004795408.1| - 0.0023 18.3 0.3 0.005 17.2 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|344211088|ref|YP_004795408.1| - 0.026 14.3 0.1 0.045 13.5 0.0 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF1119 PF06550.6 gi|344211089|ref|YP_004795409.1| - 1.9e-85 286.4 26.9 1.6e-84 283.4 18.6 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Presenilin PF01080.12 gi|344211089|ref|YP_004795409.1| - 0.00044 19.2 4.8 0.43 9.3 0.0 2.3 2 1 0 2 2 2 2 Presenilin Peptidase_A22B PF04258.8 gi|344211089|ref|YP_004795409.1| - 0.00056 19.4 9.3 0.025 14.0 2.9 2.6 2 1 0 2 2 2 2 Signal peptide peptidase Gar1 PF04410.9 gi|344211090|ref|YP_004795410.1| - 1.5e-06 27.7 0.0 1.6e-06 27.6 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.12 gi|344211091|ref|YP_004795411.1| - 2.8e-27 95.1 0.0 3.2e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein ATP-grasp PF02222.17 gi|344211091|ref|YP_004795411.1| - 0.012 14.9 0.1 0.017 14.4 0.0 1.3 1 1 0 1 1 1 0 ATP-grasp domain CAP PF00188.21 gi|344211092|ref|YP_004795412.1| - 1.5e-06 28.7 0.0 2.6e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Cysteine-rich secretory protein family MSP1_C PF07462.6 gi|344211092|ref|YP_004795412.1| - 0.34 9.2 4.4 0.5 8.6 3.0 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus DUF3408 PF11888.3 gi|344211092|ref|YP_004795412.1| - 1 9.3 3.6 0.3 11.0 0.3 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3408) COX2 PF00116.15 gi|344211093|ref|YP_004795413.1| - 3.3e-21 75.3 0.0 9e-21 73.9 0.0 1.8 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|344211093|ref|YP_004795413.1| - 1.2e-08 34.7 0.2 1.9e-08 34.1 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.1 gi|344211093|ref|YP_004795413.1| - 0.0091 15.8 0.0 0.022 14.6 0.0 1.8 1 1 0 1 1 1 1 Cupredoxin-like domain DUF1772 PF08592.6 gi|344211093|ref|YP_004795413.1| - 0.031 14.0 4.2 0.038 13.7 2.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) TrbC PF04956.8 gi|344211093|ref|YP_004795413.1| - 0.33 11.0 3.5 0.51 10.3 0.6 2.0 2 0 0 2 2 2 0 TrbC/VIRB2 family UbiA PF01040.13 gi|344211094|ref|YP_004795414.1| - 4.2e-32 111.3 24.4 4.2e-32 111.3 16.9 3.0 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|344211094|ref|YP_004795414.1| - 2.3e-18 66.0 11.7 2.3e-18 66.0 8.1 3.4 2 1 0 2 2 2 1 Cytochrome oxidase assembly protein DGF-1_5 PF11038.3 gi|344211095|ref|YP_004795415.1| - 0.039 13.1 5.1 0.062 12.5 3.6 1.3 1 0 0 1 1 1 0 Dispersed gene family protein 1 of Trypanosoma cruzi region 5 Rdx PF10262.4 gi|344211096|ref|YP_004795416.1| - 8.8e-18 64.1 0.0 9.6e-18 63.9 0.0 1.0 1 0 0 1 1 1 1 Rdx family ABC_tran PF00005.22 gi|344211097|ref|YP_004795417.1| - 1.9e-30 105.9 0.0 2.9e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211097|ref|YP_004795417.1| - 6.5e-18 65.6 0.0 2.8e-11 43.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|344211097|ref|YP_004795417.1| - 2e-05 24.0 0.1 0.19 11.1 0.0 2.5 2 1 1 3 3 3 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|344211097|ref|YP_004795417.1| - 2.1e-05 24.6 0.2 3.3e-05 23.9 0.2 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.1 gi|344211097|ref|YP_004795417.1| - 3e-05 23.6 0.2 0.00017 21.2 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|344211097|ref|YP_004795417.1| - 5.7e-05 22.3 0.0 0.019 14.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain UPF0079 PF02367.12 gi|344211097|ref|YP_004795417.1| - 0.00012 21.6 0.2 0.00022 20.8 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_28 PF13521.1 gi|344211097|ref|YP_004795417.1| - 0.00017 21.6 0.1 0.00026 21.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344211097|ref|YP_004795417.1| - 0.0005 19.3 0.0 0.12 11.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344211097|ref|YP_004795417.1| - 0.00057 19.3 0.5 0.0012 18.3 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|344211097|ref|YP_004795417.1| - 0.0015 18.9 0.0 0.0019 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344211097|ref|YP_004795417.1| - 0.0022 18.1 0.0 0.0043 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344211097|ref|YP_004795417.1| - 0.0022 17.1 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|344211097|ref|YP_004795417.1| - 0.0051 16.7 0.6 0.012 15.5 0.4 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|344211097|ref|YP_004795417.1| - 0.0067 16.3 0.0 0.012 15.5 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA PF00004.24 gi|344211097|ref|YP_004795417.1| - 0.0072 16.5 0.0 0.024 14.8 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|344211097|ref|YP_004795417.1| - 0.01 15.6 0.0 0.055 13.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|344211097|ref|YP_004795417.1| - 0.016 14.2 0.0 0.05 12.6 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin cobW PF02492.14 gi|344211097|ref|YP_004795417.1| - 0.021 14.2 0.4 0.073 12.5 0.1 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|344211097|ref|YP_004795417.1| - 0.024 14.0 1.6 0.093 12.1 0.1 2.3 2 1 1 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|344211097|ref|YP_004795417.1| - 0.025 14.2 0.0 0.18 11.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|344211097|ref|YP_004795417.1| - 0.028 14.0 0.2 0.097 12.3 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|344211097|ref|YP_004795417.1| - 0.034 14.9 0.0 0.082 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AFG1_ATPase PF03969.11 gi|344211097|ref|YP_004795417.1| - 0.042 12.6 0.0 0.21 10.3 0.0 1.9 1 1 0 1 1 1 0 AFG1-like ATPase Miro PF08477.8 gi|344211097|ref|YP_004795417.1| - 0.053 14.0 0.0 0.096 13.1 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|344211097|ref|YP_004795417.1| - 0.061 13.0 0.3 0.16 11.6 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|344211097|ref|YP_004795417.1| - 0.061 12.4 0.0 0.099 11.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRP54 PF00448.17 gi|344211097|ref|YP_004795417.1| - 0.077 12.4 0.2 0.16 11.4 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|344211097|ref|YP_004795417.1| - 0.085 12.7 0.0 0.35 10.7 0.0 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|344211097|ref|YP_004795417.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_ATPase PF09818.4 gi|344211097|ref|YP_004795417.1| - 0.14 10.7 1.5 1.5 7.3 0.4 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|344211097|ref|YP_004795417.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase PduV-EutP PF10662.4 gi|344211097|ref|YP_004795417.1| - 0.15 11.5 0.1 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF815 PF05673.8 gi|344211097|ref|YP_004795417.1| - 0.18 10.6 0.0 0.43 9.4 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_PrkA PF08298.6 gi|344211097|ref|YP_004795417.1| - 0.2 10.2 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain ABC2_membrane PF01061.19 gi|344211098|ref|YP_004795418.1| - 6.7e-23 80.9 12.2 9.3e-23 80.4 8.4 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|344211098|ref|YP_004795418.1| - 1.4e-11 44.0 4.3 1.4e-11 44.0 3.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|344211098|ref|YP_004795418.1| - 6.2e-08 31.8 4.5 6.2e-08 31.8 3.1 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|344211098|ref|YP_004795418.1| - 2.7e-06 26.7 9.4 4.4e-06 26.0 6.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|344211098|ref|YP_004795418.1| - 0.00087 18.1 1.0 0.0011 17.7 0.7 1.1 1 0 0 1 1 1 1 Predicted permease (DUF2074) DSPc PF00782.15 gi|344211099|ref|YP_004795419.1| - 1.9e-09 37.2 0.0 2.2e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|344211099|ref|YP_004795419.1| - 2.3e-05 23.8 0.0 2.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|344211099|ref|YP_004795419.1| - 0.00077 19.5 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.7 gi|344211099|ref|YP_004795419.1| - 0.0018 17.7 0.0 0.069 12.5 0.0 2.0 1 1 1 2 2 2 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.1 gi|344211099|ref|YP_004795419.1| - 0.011 15.9 0.0 0.014 15.7 0.0 1.3 1 0 0 1 1 1 0 Tyrosine phosphatase family UPF0052 PF01933.13 gi|344211100|ref|YP_004795420.1| - 1.7e-41 142.5 0.0 2.4e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|344211101|ref|YP_004795421.1| - 4.9e-09 35.4 0.4 3.9e-08 32.4 0.3 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|344211101|ref|YP_004795421.1| - 0.00035 19.8 0.1 0.00058 19.1 0.0 1.3 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|344211101|ref|YP_004795421.1| - 0.00063 19.0 0.0 0.0014 17.9 0.0 1.4 1 1 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.16 gi|344211101|ref|YP_004795421.1| - 0.03 13.3 0.0 0.051 12.6 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|344211101|ref|YP_004795421.1| - 0.035 13.2 1.5 0.045 12.8 1.1 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase Radical_SAM PF04055.16 gi|344211101|ref|YP_004795421.1| - 0.039 14.1 0.0 0.55 10.3 0.0 2.2 1 1 0 1 1 1 0 Radical SAM superfamily DUF1633 PF07794.6 gi|344211101|ref|YP_004795421.1| - 0.052 11.5 2.0 0.059 11.3 1.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) CitG PF01874.11 gi|344211102|ref|YP_004795422.1| - 3e-71 239.8 0.6 3.4e-71 239.6 0.4 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase EthD PF07110.6 gi|344211102|ref|YP_004795422.1| - 0.014 16.3 3.9 13 6.7 0.2 3.4 2 1 1 3 3 3 0 EthD domain DUF447 PF04289.7 gi|344211103|ref|YP_004795423.1| - 1.8e-42 144.9 0.0 2.1e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|344211104|ref|YP_004795424.1| - 2.7e-16 59.4 0.0 3e-16 59.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 ParA PF10609.4 gi|344211105|ref|YP_004795425.1| - 1.8e-34 117.4 0.0 3.7e-34 116.4 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|344211105|ref|YP_004795425.1| - 4.9e-20 71.7 0.0 6.9e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|344211105|ref|YP_004795425.1| - 2.9e-13 49.6 1.1 4.4e-13 48.9 0.3 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|344211105|ref|YP_004795425.1| - 6.1e-08 32.7 0.0 3.1e-07 30.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|344211105|ref|YP_004795425.1| - 8e-08 31.6 0.0 1.3e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|344211105|ref|YP_004795425.1| - 4.7e-05 22.7 0.0 0.013 14.6 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|344211105|ref|YP_004795425.1| - 0.00017 20.7 0.0 0.00028 20.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|344211105|ref|YP_004795425.1| - 0.00026 20.1 2.1 0.00061 18.9 0.4 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|344211105|ref|YP_004795425.1| - 0.0061 16.1 0.0 4.4 6.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|344211105|ref|YP_004795425.1| - 0.0096 15.3 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|344211105|ref|YP_004795425.1| - 0.041 13.5 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_17 PF13207.1 gi|344211105|ref|YP_004795425.1| - 0.048 14.4 0.0 0.1 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|344211105|ref|YP_004795425.1| - 0.12 12.0 1.4 9.7 6.0 0.3 2.5 2 0 0 2 2 2 0 Part of AAA domain Ribosomal_S13 PF00416.17 gi|344211107|ref|YP_004795427.1| - 8.3e-38 129.1 3.5 1.1e-37 128.7 2.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|344211107|ref|YP_004795427.1| - 0.0032 16.0 0.1 0.0032 16.0 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.20 gi|344211108|ref|YP_004795428.1| - 1.6e-12 46.6 0.2 7.8e-12 44.4 0.0 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|344211108|ref|YP_004795428.1| - 0.00084 19.6 0.5 0.0041 17.4 0.3 2.0 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|344211109|ref|YP_004795429.1| - 3e-44 149.6 0.3 3.8e-44 149.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.17 gi|344211109|ref|YP_004795429.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L18p/L5e family RNA_pol_A_bac PF01000.21 gi|344211110|ref|YP_004795430.1| - 2.3e-19 69.5 0.0 9.7e-19 67.5 0.0 1.9 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|344211110|ref|YP_004795430.1| - 2.8e-12 45.5 0.0 3.5e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18e PF00828.14 gi|344211111|ref|YP_004795431.1| - 7.3e-13 49.0 0.1 9.3e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 BPS PF08947.5 gi|344211111|ref|YP_004795431.1| - 0.013 15.0 0.1 0.031 13.8 0.1 1.6 1 0 0 1 1 1 0 BPS (Between PH and SH2) Ribosomal_L13 PF00572.13 gi|344211112|ref|YP_004795432.1| - 8.5e-21 74.3 0.0 1.2e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|344211113|ref|YP_004795433.1| - 3e-35 121.0 0.0 3.4e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|344211114|ref|YP_004795434.1| - 6.1e-27 93.4 0.2 6.7e-27 93.2 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.17 gi|344211115|ref|YP_004795435.1| - 7.4e-18 64.0 0.0 8e-18 63.9 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|344211116|ref|YP_004795436.1| - 9.5e-73 244.7 1.5 1.3e-72 244.2 1.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|344211116|ref|YP_004795436.1| - 9.4e-37 125.8 0.3 2.2e-36 124.7 0.2 1.7 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|344211116|ref|YP_004795436.1| - 6e-05 22.0 0.3 0.0001 21.3 0.2 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|344211116|ref|YP_004795436.1| - 0.0021 18.0 0.2 0.0069 16.3 0.0 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|344211116|ref|YP_004795436.1| - 0.0028 18.1 0.1 0.0083 16.6 0.0 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SUKH-4 PF14435.1 gi|344211116|ref|YP_004795436.1| - 0.012 15.2 0.1 0.022 14.4 0.1 1.4 1 0 0 1 1 1 0 SUKH-4 immunity protein Ribosomal_S2 PF00318.15 gi|344211117|ref|YP_004795437.1| - 3e-36 124.6 0.0 2.7e-18 65.9 0.3 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 SDA1 PF05285.7 gi|344211117|ref|YP_004795437.1| - 1.4 8.1 9.0 1.7 7.8 6.2 1.1 1 0 0 1 1 1 0 SDA1 DUF1510 PF07423.6 gi|344211117|ref|YP_004795437.1| - 3.2 7.0 7.5 5.1 6.3 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) DUF21 PF01595.15 gi|344211118|ref|YP_004795438.1| - 0.063 12.5 4.3 0.091 12.0 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF21 ABC2_membrane_4 PF12730.2 gi|344211118|ref|YP_004795438.1| - 0.52 9.4 13.3 0.64 9.1 9.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein TcpE PF12648.2 gi|344211118|ref|YP_004795438.1| - 9.9 6.3 6.7 17 5.6 4.7 1.3 1 0 0 1 1 1 0 TcpE family p450 PF00067.17 gi|344211120|ref|YP_004795440.1| - 2.8e-98 329.4 0.0 3.4e-98 329.1 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 PAS_9 PF13426.1 gi|344211121|ref|YP_004795441.1| - 3.2e-52 175.2 2.0 2.6e-27 95.2 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|344211121|ref|YP_004795441.1| - 4.3e-38 129.7 9.7 3.7e-14 52.7 0.1 3.8 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|344211121|ref|YP_004795441.1| - 6.7e-27 93.5 0.4 1.2e-10 41.2 0.0 3.7 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|344211121|ref|YP_004795441.1| - 2.9e-19 68.8 0.2 8.8e-19 67.2 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|344211121|ref|YP_004795441.1| - 4.6e-19 67.5 1.4 6.4e-08 32.1 0.0 4.3 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.19 gi|344211121|ref|YP_004795441.1| - 1.5e-16 60.3 0.0 3.8e-16 59.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|344211121|ref|YP_004795441.1| - 4e-14 52.3 1.2 4e-14 52.3 0.8 3.7 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|344211121|ref|YP_004795441.1| - 1.6e-12 47.3 0.1 1.5e-09 37.8 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.2 gi|344211121|ref|YP_004795441.1| - 1.3e-05 25.1 5.0 0.018 15.0 0.1 4.8 3 3 0 3 3 3 1 PAS fold PAS_10 PF13596.1 gi|344211121|ref|YP_004795441.1| - 0.00015 22.0 0.0 0.9 9.8 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|344211121|ref|YP_004795441.1| - 0.0011 18.7 0.2 0.0087 15.8 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|344211121|ref|YP_004795441.1| - 0.13 11.9 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UME PF08064.8 gi|344211121|ref|YP_004795441.1| - 0.22 11.4 0.0 0.49 10.3 0.0 1.5 1 0 0 1 1 1 0 UME (NUC010) domain GHMP_kinases_N PF00288.21 gi|344211122|ref|YP_004795442.1| - 4.1e-15 55.5 1.7 5.1e-15 55.2 0.4 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|344211122|ref|YP_004795442.1| - 9.1e-15 54.6 3.5 1e-14 54.4 0.1 2.5 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|344211122|ref|YP_004795442.1| - 9.1e-05 21.6 0.0 0.0006 19.0 0.0 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|344211123|ref|YP_004795443.1| - 1.1e-36 126.5 5.6 1.4e-36 126.2 3.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3561 PF12084.3 gi|344211123|ref|YP_004795443.1| - 0.17 11.7 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Lactamase_B PF00753.22 gi|344211125|ref|YP_004795445.1| - 1.2e-12 47.8 1.5 3.1e-12 46.5 1.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344211125|ref|YP_004795445.1| - 7.3e-07 28.9 0.6 5.5e-06 26.0 0.1 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|344211125|ref|YP_004795445.1| - 0.00028 20.6 0.8 0.0008 19.1 0.1 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase DUF1413 PF07205.6 gi|344211125|ref|YP_004795445.1| - 0.0057 16.1 0.2 0.1 12.1 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1413) polyprenyl_synt PF00348.12 gi|344211126|ref|YP_004795446.1| - 1.6e-60 204.1 0.6 2.1e-60 203.7 0.4 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase ArsA_ATPase PF02374.10 gi|344211127|ref|YP_004795447.1| - 2.7e-82 276.2 0.0 3e-82 276.0 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|344211127|ref|YP_004795447.1| - 2.6e-09 36.7 0.3 9.4e-08 31.6 0.0 2.2 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344211127|ref|YP_004795447.1| - 4.8e-05 23.3 0.0 0.00041 20.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain YhjQ PF06564.7 gi|344211127|ref|YP_004795447.1| - 0.0019 17.5 0.1 0.004 16.5 0.0 1.5 1 0 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|344211127|ref|YP_004795447.1| - 0.0032 16.6 0.0 0.0064 15.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.12 gi|344211127|ref|YP_004795447.1| - 0.011 15.1 0.2 0.021 14.2 0.2 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ParA PF10609.4 gi|344211127|ref|YP_004795447.1| - 0.013 15.3 0.5 0.048 13.5 0.0 2.0 2 0 0 2 2 2 0 ParA/MinD ATPase like SRP54 PF00448.17 gi|344211127|ref|YP_004795447.1| - 0.027 13.9 0.4 0.085 12.2 0.2 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|344211127|ref|YP_004795447.1| - 0.079 12.3 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|344211127|ref|YP_004795447.1| - 0.11 11.9 5.5 0.83 9.0 3.8 2.5 1 1 0 1 1 1 0 AAA domain tRNA-synt_1c PF00749.16 gi|344211128|ref|YP_004795448.1| - 4.7e-57 193.0 0.0 5.7e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|344211128|ref|YP_004795448.1| - 4.2e-14 52.5 0.0 1.8e-13 50.5 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain EGF PF00008.22 gi|344211128|ref|YP_004795448.1| - 0.05 13.5 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 EGF-like domain tRNA-synt_1d PF00750.14 gi|344211128|ref|YP_004795448.1| - 0.11 11.2 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) PAS_9 PF13426.1 gi|344211129|ref|YP_004795449.1| - 3.7e-35 120.4 0.0 1e-16 61.1 0.0 4.4 3 2 0 3 3 3 3 PAS domain PAS PF00989.19 gi|344211129|ref|YP_004795449.1| - 1.7e-33 114.7 0.2 1e-16 60.7 0.0 4.7 3 2 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|344211129|ref|YP_004795449.1| - 4.3e-32 110.4 9.8 6.9e-15 55.0 0.2 4.9 4 1 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|344211129|ref|YP_004795449.1| - 1.1e-22 79.0 0.1 9e-08 31.7 0.0 4.1 4 0 0 4 4 4 3 PAS domain HATPase_c PF02518.21 gi|344211129|ref|YP_004795449.1| - 4.6e-19 68.1 0.0 1.1e-18 66.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344211129|ref|YP_004795449.1| - 4.9e-11 42.4 1.9 1.5e-10 40.8 1.3 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|344211129|ref|YP_004795449.1| - 1.1e-10 41.4 0.2 0.0025 17.7 0.0 5.2 4 2 0 4 4 4 3 PAS fold PAS_10 PF13596.1 gi|344211129|ref|YP_004795449.1| - 6.7e-05 23.1 0.0 0.049 13.9 0.0 3.3 3 0 0 3 3 3 1 PAS domain PAS_3 PF08447.6 gi|344211129|ref|YP_004795449.1| - 0.002 18.1 0.0 0.0077 16.3 0.0 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|344211129|ref|YP_004795449.1| - 0.039 13.5 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|344211129|ref|YP_004795449.1| - 0.084 12.4 0.0 0.26 10.8 0.0 1.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HSP20 PF00011.16 gi|344211130|ref|YP_004795450.1| - 5.3e-17 61.5 0.0 7.3e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PIH1 PF08190.7 gi|344211130|ref|YP_004795450.1| - 0.004 16.6 0.0 0.0045 16.4 0.0 1.0 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 CDC48_N PF02359.13 gi|344211131|ref|YP_004795451.1| - 0.03 14.2 0.0 0.03 14.2 0.0 1.0 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Abhydrolase_3 PF07859.8 gi|344211133|ref|YP_004795453.1| - 1.4e-19 70.5 1.3 2.2e-19 69.8 0.9 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|344211133|ref|YP_004795453.1| - 1.9e-15 56.9 0.7 2.6e-15 56.4 0.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|344211133|ref|YP_004795453.1| - 2.1e-13 49.9 0.1 1.1e-12 47.7 0.1 1.8 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.23 gi|344211133|ref|YP_004795453.1| - 9.8e-09 34.4 0.0 1.9e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_6 PF12697.2 gi|344211133|ref|YP_004795453.1| - 1.1e-07 31.9 9.7 5.6e-07 29.6 6.7 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|344211133|ref|YP_004795453.1| - 0.0019 18.0 0.1 0.0031 17.3 0.1 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_1 PF00561.15 gi|344211133|ref|YP_004795453.1| - 0.019 14.5 0.1 0.34 10.4 0.0 2.1 2 0 0 2 2 2 0 alpha/beta hydrolase fold FSH1 PF03959.8 gi|344211133|ref|YP_004795453.1| - 0.023 14.1 0.0 0.033 13.6 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.11 gi|344211133|ref|YP_004795453.1| - 0.12 11.7 0.0 3.5 7.0 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Fer4_7 PF12838.2 gi|344211134|ref|YP_004795454.1| - 6.4e-13 48.8 23.1 2e-08 34.4 4.8 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344211134|ref|YP_004795454.1| - 2.4e-12 45.9 14.5 9.1e-08 31.3 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|344211134|ref|YP_004795454.1| - 1.3e-10 41.3 5.9 1.9e-10 40.8 4.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|344211134|ref|YP_004795454.1| - 1.3e-08 34.3 15.4 4.2e-06 26.3 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|344211134|ref|YP_004795454.1| - 6.3e-08 32.3 7.5 9.8e-08 31.7 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344211134|ref|YP_004795454.1| - 1.1e-07 31.5 19.3 3.1e-05 23.6 6.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|344211134|ref|YP_004795454.1| - 4.4e-07 29.8 9.9 5.7e-06 26.2 4.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344211134|ref|YP_004795454.1| - 5.3e-07 29.1 10.6 0.00035 20.3 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|344211134|ref|YP_004795454.1| - 1.3e-06 29.0 5.3 7.9e-05 23.3 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|344211134|ref|YP_004795454.1| - 2.1e-06 27.9 0.7 0.033 14.5 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|344211134|ref|YP_004795454.1| - 2.2e-06 27.9 2.9 0.00032 21.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|344211134|ref|YP_004795454.1| - 2.1e-05 24.4 9.0 0.00033 20.7 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|344211134|ref|YP_004795454.1| - 0.00089 19.6 14.6 0.0031 17.8 10.1 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|344211134|ref|YP_004795454.1| - 0.0019 18.6 12.9 0.0026 18.2 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|344211134|ref|YP_004795454.1| - 0.027 15.0 16.8 0.3 11.6 11.6 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain ETF PF01012.16 gi|344211135|ref|YP_004795455.1| - 5.4e-32 110.7 0.0 8e-32 110.2 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|344211136|ref|YP_004795456.1| - 3.7e-21 74.5 0.1 8.5e-21 73.3 0.1 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|344211136|ref|YP_004795456.1| - 5.8e-17 61.8 0.0 1.6e-16 60.4 0.0 1.8 1 1 0 1 1 1 1 Electron transfer flavoprotein domain DAO PF01266.19 gi|344211137|ref|YP_004795457.1| - 2.8e-11 42.9 4.3 5.2e-06 25.6 0.4 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344211137|ref|YP_004795457.1| - 4.6e-11 42.3 2.6 1.9e-10 40.3 1.8 1.9 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|344211137|ref|YP_004795457.1| - 1.3e-08 34.3 0.7 2e-08 33.7 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344211137|ref|YP_004795457.1| - 7.3e-06 25.2 0.5 1.5e-05 24.1 0.3 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|344211137|ref|YP_004795457.1| - 2.4e-05 24.3 0.2 0.00022 21.1 0.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|344211137|ref|YP_004795457.1| - 2.8e-05 24.0 0.7 0.00011 22.1 0.5 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344211137|ref|YP_004795457.1| - 0.0029 16.1 3.2 0.0059 15.1 0.9 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|344211137|ref|YP_004795457.1| - 0.0041 16.0 10.6 0.01 14.7 3.1 2.3 1 1 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|344211137|ref|YP_004795457.1| - 0.011 14.5 4.1 0.11 11.3 2.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A ThiF PF00899.16 gi|344211137|ref|YP_004795457.1| - 0.016 15.0 0.2 0.046 13.5 0.2 1.7 2 0 0 2 2 2 0 ThiF family Pyr_redox_3 PF13738.1 gi|344211137|ref|YP_004795457.1| - 0.044 13.8 0.1 0.089 12.8 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|344211137|ref|YP_004795457.1| - 0.059 11.9 1.5 0.73 8.3 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Fer4_10 PF13237.1 gi|344211137|ref|YP_004795457.1| - 0.15 11.8 1.1 0.29 10.9 0.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Lycopene_cycl PF05834.7 gi|344211137|ref|YP_004795457.1| - 0.17 10.7 1.5 3.5 6.4 0.5 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Acetyltransf_4 PF13420.1 gi|344211139|ref|YP_004795459.1| - 1.5e-14 54.2 0.0 2.1e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344211139|ref|YP_004795459.1| - 7e-12 45.2 0.0 1.3e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344211139|ref|YP_004795459.1| - 1.9e-08 34.4 0.0 3.3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344211139|ref|YP_004795459.1| - 3.3e-07 30.5 0.0 5.4e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211139|ref|YP_004795459.1| - 5e-07 29.7 0.0 9.5e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain UBA_4 PF14555.1 gi|344211139|ref|YP_004795459.1| - 0.093 12.2 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain Bac_luciferase PF00296.15 gi|344211140|ref|YP_004795460.1| - 8.8e-66 222.1 11.7 1.1e-65 221.8 8.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase AMP-binding PF00501.23 gi|344211141|ref|YP_004795461.1| - 1.1e-94 317.2 0.3 1.3e-94 316.9 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344211141|ref|YP_004795461.1| - 2.1e-15 57.4 0.0 5.1e-15 56.1 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF456 PF04306.8 gi|344211143|ref|YP_004795463.1| - 3.2e-26 92.0 25.0 3.2e-26 92.0 17.3 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF456) DUF2955 PF11168.3 gi|344211143|ref|YP_004795463.1| - 0.028 14.0 21.3 0.033 13.8 8.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2955) GNAT_acetyltr_2 PF13718.1 gi|344211144|ref|YP_004795464.1| - 3e-50 170.2 0.1 1.6e-49 167.9 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|344211144|ref|YP_004795464.1| - 1.1e-46 158.6 0.0 1.9e-46 157.8 0.0 1.4 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|344211144|ref|YP_004795464.1| - 2.7e-23 81.4 0.0 9.1e-23 79.7 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|344211144|ref|YP_004795464.1| - 2.3e-08 34.0 0.0 6.4e-08 32.6 0.0 1.8 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|344211144|ref|YP_004795464.1| - 4.8e-07 29.5 0.7 1.4e-06 28.0 0.0 2.2 3 0 0 3 3 3 1 AAA domain Acetyltransf_7 PF13508.1 gi|344211144|ref|YP_004795464.1| - 9.5e-06 25.6 0.0 2.7e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344211144|ref|YP_004795464.1| - 0.0017 18.4 0.0 0.26 11.4 0.0 3.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain NMO PF03060.10 gi|344211145|ref|YP_004795465.1| - 5.7e-68 229.4 9.5 4.2e-67 226.6 6.6 1.9 1 1 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.20 gi|344211145|ref|YP_004795465.1| - 4e-06 25.9 4.2 7e-05 21.8 2.9 2.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|344211145|ref|YP_004795465.1| - 2.4e-05 23.3 7.9 2.4e-05 23.3 5.5 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|344211145|ref|YP_004795465.1| - 0.026 13.6 0.2 0.046 12.8 0.2 1.4 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|344211145|ref|YP_004795465.1| - 0.054 12.7 0.3 0.086 12.0 0.2 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein DUF561 PF04481.7 gi|344211145|ref|YP_004795465.1| - 0.18 10.7 0.0 0.29 10.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ThiG PF05690.9 gi|344211145|ref|YP_004795465.1| - 1.8 7.5 8.1 0.039 13.0 0.8 1.8 2 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG Ribosomal_L7Ae PF01248.21 gi|344211146|ref|YP_004795466.1| - 2.6e-25 87.7 0.0 3.1e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|344211146|ref|YP_004795466.1| - 0.00062 19.5 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|344211146|ref|YP_004795466.1| - 0.045 14.0 0.2 0.058 13.6 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.7 gi|344211146|ref|YP_004795466.1| - 0.078 13.0 1.5 5.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) Ribosomal_S28e PF01200.13 gi|344211147|ref|YP_004795467.1| - 5.7e-29 99.6 1.9 6.5e-29 99.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|344211148|ref|YP_004795468.1| - 5.1e-28 96.7 0.0 7.4e-28 96.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|344211148|ref|YP_004795468.1| - 2.2e-05 23.9 1.0 3e-05 23.5 0.7 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|344211148|ref|YP_004795468.1| - 0.025 14.4 0.5 0.04 13.7 0.4 1.3 1 0 0 1 1 1 0 YHS domain Arc_trans_TRASH PF08394.5 gi|344211148|ref|YP_004795468.1| - 0.19 11.8 2.0 0.37 10.9 1.4 1.5 1 1 0 1 1 1 0 Archaeal TRASH domain DUF329 PF03884.9 gi|344211148|ref|YP_004795468.1| - 1 8.9 5.3 5.7 6.5 3.6 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF329) NOA36 PF06524.7 gi|344211148|ref|YP_004795468.1| - 3.3 6.8 12.9 3.7 6.7 9.0 1.2 1 0 0 1 1 1 0 NOA36 protein DUF1510 PF07423.6 gi|344211148|ref|YP_004795468.1| - 3.6 6.8 15.7 3.9 6.7 10.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) PPP4R2 PF09184.6 gi|344211148|ref|YP_004795468.1| - 5.8 6.3 16.8 6.4 6.2 11.6 1.1 1 0 0 1 1 1 0 PPP4R2 NDK PF00334.14 gi|344211149|ref|YP_004795469.1| - 9.2e-57 190.5 0.0 1e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GST_N_3 PF13417.1 gi|344211150|ref|YP_004795470.1| - 1.5e-14 53.9 0.0 1.8e-14 53.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|344211150|ref|YP_004795470.1| - 2.2e-14 53.1 0.0 2.7e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|344211150|ref|YP_004795470.1| - 1.9e-10 40.5 0.0 2.2e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|344211150|ref|YP_004795470.1| - 0.0012 19.0 0.1 0.0013 18.9 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|344211150|ref|YP_004795470.1| - 0.013 15.6 0.0 0.015 15.4 0.0 1.1 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Rop PF01815.11 gi|344211150|ref|YP_004795470.1| - 0.073 12.5 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Rop protein SelR PF01641.13 gi|344211152|ref|YP_004795472.1| - 8.6e-48 161.1 0.1 9.7e-48 160.9 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|344211152|ref|YP_004795472.1| - 0.00073 19.5 0.1 0.0016 18.4 0.1 1.6 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_2 PF13240.1 gi|344211152|ref|YP_004795472.1| - 0.016 14.6 0.9 0.6 9.6 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|344211152|ref|YP_004795472.1| - 0.018 14.8 0.1 0.077 12.8 0.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|344211152|ref|YP_004795472.1| - 0.029 13.6 7.7 0.53 9.6 0.1 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding HNH_5 PF14279.1 gi|344211152|ref|YP_004795472.1| - 0.12 12.4 0.5 0.27 11.2 0.0 1.7 2 0 0 2 2 2 0 HNH endonuclease RRN7 PF11781.3 gi|344211152|ref|YP_004795472.1| - 0.13 11.8 5.7 0.94 9.0 0.1 2.7 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|344211152|ref|YP_004795472.1| - 1.6 8.0 4.9 12 5.2 0.1 2.5 2 1 1 3 3 2 0 zinc-ribbon domain Acetyltransf_1 PF00583.19 gi|344211153|ref|YP_004795473.1| - 6.9e-18 64.4 0.1 1.1e-17 63.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344211153|ref|YP_004795473.1| - 4.1e-13 49.4 0.2 4.9e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211153|ref|YP_004795473.1| - 3.4e-12 46.3 0.0 5.4e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344211153|ref|YP_004795473.1| - 4.8e-08 32.9 0.1 6.3e-08 32.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211153|ref|YP_004795473.1| - 2.1e-06 27.7 0.0 2.6e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211153|ref|YP_004795473.1| - 2.9e-05 23.7 0.0 5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|344211153|ref|YP_004795473.1| - 5.9e-05 22.9 0.1 7.2e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|344211153|ref|YP_004795473.1| - 6.7e-05 22.4 0.5 0.00072 19.1 0.0 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344211153|ref|YP_004795473.1| - 0.00059 19.6 0.0 0.0012 18.7 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|344211153|ref|YP_004795473.1| - 0.004 17.3 0.0 0.005 17.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|344211153|ref|YP_004795473.1| - 0.024 14.3 0.0 0.072 12.8 0.0 1.8 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.1 gi|344211153|ref|YP_004795473.1| - 0.027 14.4 1.2 0.06 13.2 0.1 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain CBS PF00571.23 gi|344211154|ref|YP_004795474.1| - 1.4e-15 56.8 0.8 2.3e-07 30.4 0.0 2.2 2 0 0 2 2 2 2 CBS domain GGDN PF05165.7 gi|344211155|ref|YP_004795475.1| - 1.1e-89 299.7 1.0 1.4e-89 299.4 0.7 1.0 1 0 0 1 1 1 1 GGDN family DUF3876 PF12992.2 gi|344211155|ref|YP_004795475.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) MarR_2 PF12802.2 gi|344211156|ref|YP_004795476.1| - 0.019 14.6 0.5 0.051 13.2 0.3 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|344211156|ref|YP_004795476.1| - 0.072 12.9 0.7 0.095 12.5 0.5 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain CARDB PF07705.6 gi|344211158|ref|YP_004795478.1| - 4.1e-06 26.7 11.5 0.0045 17.0 0.2 2.8 3 0 0 3 3 3 2 CARDB DUF1034 PF06280.7 gi|344211158|ref|YP_004795478.1| - 9.3 6.6 14.2 1.2 9.5 1.8 3.7 2 2 1 3 3 3 0 Fn3-like domain (DUF1034) DUF2064 PF09837.4 gi|344211159|ref|YP_004795479.1| - 6.1e-05 22.6 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) HemY_N PF07219.8 gi|344211160|ref|YP_004795480.1| - 0.071 12.6 1.5 0.12 11.9 0.1 2.0 2 1 0 2 2 2 0 HemY protein N-terminus SHNi-TPR PF10516.4 gi|344211160|ref|YP_004795480.1| - 0.14 11.4 0.8 0.45 9.8 0.2 2.0 2 0 0 2 2 2 0 SHNi-TPR DUF4398 PF14346.1 gi|344211160|ref|YP_004795480.1| - 0.22 11.6 12.3 0.23 11.5 2.5 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Acyl-CoA_dh_C PF12806.2 gi|344211160|ref|YP_004795480.1| - 0.22 11.3 3.2 0.34 10.7 0.6 2.2 2 1 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like TPR_16 PF13432.1 gi|344211160|ref|YP_004795480.1| - 0.22 12.2 2.4 0.45 11.2 0.2 2.5 1 1 2 3 3 3 0 Tetratricopeptide repeat Exonuc_VII_S PF02609.11 gi|344211160|ref|YP_004795480.1| - 0.33 10.7 2.1 12 5.7 0.0 3.3 4 0 0 4 4 4 0 Exonuclease VII small subunit UDG PF03167.14 gi|344211161|ref|YP_004795481.1| - 3e-19 68.9 0.0 3.8e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|344211161|ref|YP_004795481.1| - 0.013 14.9 0.4 0.024 14.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF539) Chorismate_synt PF01264.16 gi|344211162|ref|YP_004795482.1| - 1.1e-121 405.6 0.0 1.2e-121 405.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|344211163|ref|YP_004795483.1| - 1.5e-103 346.4 0.1 1.8e-103 346.2 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.6 gi|344211163|ref|YP_004795483.1| - 0.019 15.2 0.0 0.2 11.9 0.0 2.3 2 0 0 2 2 2 0 Copper amine oxidase N-terminal domain Leucyl-specific PF14795.1 gi|344211163|ref|YP_004795483.1| - 0.11 12.4 0.3 0.42 10.5 0.1 2.1 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain adh_short PF00106.20 gi|344211164|ref|YP_004795484.1| - 1.9e-26 92.9 6.4 2.4e-26 92.6 4.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344211164|ref|YP_004795484.1| - 7.8e-18 65.1 0.0 1.1e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344211164|ref|YP_004795484.1| - 5.2e-14 52.3 2.9 6.5e-14 51.9 2.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344211164|ref|YP_004795484.1| - 9e-05 22.0 1.0 0.002 17.5 0.7 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Fox-1_C PF12414.3 gi|344211164|ref|YP_004795484.1| - 0.0029 17.9 0.4 0.0069 16.7 0.2 1.6 1 0 0 1 1 1 1 Calcitonin gene-related peptide regulator C terminal Eno-Rase_NADH_b PF12242.3 gi|344211164|ref|YP_004795484.1| - 0.0039 16.9 1.1 0.0085 15.8 0.7 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3HCDH_N PF02737.13 gi|344211164|ref|YP_004795484.1| - 0.0051 16.4 1.3 0.0076 15.9 0.9 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|344211164|ref|YP_004795484.1| - 0.044 13.7 3.7 0.16 11.9 2.5 2.0 1 1 0 1 1 1 0 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|344211164|ref|YP_004795484.1| - 0.062 12.3 0.3 0.098 11.7 0.2 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Zip PF02535.17 gi|344211165|ref|YP_004795485.1| - 5e-07 29.0 9.9 5e-07 29.0 6.9 2.7 1 1 1 2 2 2 2 ZIP Zinc transporter PAS_9 PF13426.1 gi|344211166|ref|YP_004795486.1| - 1.3e-22 80.1 0.0 4.2e-22 78.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|344211166|ref|YP_004795486.1| - 2.6e-17 62.6 0.1 5.9e-17 61.4 0.1 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c PF02518.21 gi|344211166|ref|YP_004795486.1| - 3.5e-15 55.6 0.0 8.2e-15 54.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344211166|ref|YP_004795486.1| - 7.3e-12 45.2 0.1 2.9e-11 43.3 0.0 2.1 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|344211166|ref|YP_004795486.1| - 3.6e-08 33.2 0.5 1.7e-07 31.0 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|344211166|ref|YP_004795486.1| - 1.2e-07 31.2 0.0 4.2e-07 29.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.6 gi|344211166|ref|YP_004795486.1| - 4.5e-07 29.8 0.0 1.1e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|344211166|ref|YP_004795486.1| - 0.00018 21.1 0.0 0.00037 20.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SelA PF03841.8 gi|344211166|ref|YP_004795486.1| - 0.03 13.0 0.0 0.045 12.4 0.0 1.2 1 0 0 1 1 1 0 L-seryl-tRNA selenium transferase DUF4375 PF14300.1 gi|344211166|ref|YP_004795486.1| - 0.042 13.8 0.1 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) DUF3186 PF11382.3 gi|344211166|ref|YP_004795486.1| - 0.073 12.1 2.9 0.15 11.1 0.3 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3186) Snf7 PF03357.16 gi|344211166|ref|YP_004795486.1| - 0.17 11.2 1.0 1.3 8.4 0.3 2.1 2 0 0 2 2 2 0 Snf7 KaiC PF06745.8 gi|344211167|ref|YP_004795487.1| - 1.5e-58 197.6 0.0 1.7e-29 102.5 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|344211167|ref|YP_004795487.1| - 1.5e-23 83.2 0.1 1.8e-13 50.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344211167|ref|YP_004795487.1| - 3.8e-12 46.5 0.0 8.5e-06 25.8 0.1 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|344211167|ref|YP_004795487.1| - 6.1e-12 45.8 0.0 1.5e-05 25.1 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|344211167|ref|YP_004795487.1| - 2e-08 33.8 1.6 0.0011 18.7 0.0 3.3 3 0 0 3 3 3 2 Part of AAA domain IstB_IS21 PF01695.12 gi|344211167|ref|YP_004795487.1| - 2.2e-07 30.4 0.0 0.0017 17.7 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein GvpD PF07088.6 gi|344211167|ref|YP_004795487.1| - 2.9e-07 29.2 0.2 2.3e-06 26.2 0.1 2.5 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|344211167|ref|YP_004795487.1| - 3.5e-07 29.6 0.1 0.00075 18.6 0.0 2.3 2 1 0 2 2 2 2 recA bacterial DNA recombination protein AAA PF00004.24 gi|344211167|ref|YP_004795487.1| - 4.8e-07 30.0 1.6 0.025 14.7 0.3 3.1 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|344211167|ref|YP_004795487.1| - 7.7e-07 28.9 0.0 0.00015 21.4 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|344211167|ref|YP_004795487.1| - 1.4e-06 29.1 3.8 0.01 16.6 0.2 3.1 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|344211167|ref|YP_004795487.1| - 1e-05 25.8 1.3 0.063 13.5 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|344211167|ref|YP_004795487.1| - 1.1e-05 25.1 0.1 0.24 11.0 0.0 3.2 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|344211167|ref|YP_004795487.1| - 1.7e-05 24.7 0.0 0.17 11.7 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|344211167|ref|YP_004795487.1| - 2.8e-05 23.8 0.8 0.0099 15.4 0.0 2.5 2 1 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|344211167|ref|YP_004795487.1| - 4.4e-05 22.9 0.1 0.00032 20.1 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|344211167|ref|YP_004795487.1| - 9.9e-05 21.9 0.0 0.35 10.2 0.0 2.7 2 1 0 2 2 2 2 AAA-like domain Arch_ATPase PF01637.13 gi|344211167|ref|YP_004795487.1| - 0.00012 21.9 0.0 0.045 13.4 0.0 2.3 2 0 0 2 2 2 1 Archaeal ATPase AAA_33 PF13671.1 gi|344211167|ref|YP_004795487.1| - 0.00015 21.6 1.1 0.57 10.0 0.5 3.0 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|344211167|ref|YP_004795487.1| - 0.00037 20.1 0.7 0.095 12.2 0.0 2.6 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.22 gi|344211167|ref|YP_004795487.1| - 0.00054 20.2 0.6 0.12 12.7 0.1 2.9 3 0 0 3 3 2 1 ABC transporter DUF2075 PF09848.4 gi|344211167|ref|YP_004795487.1| - 0.00063 18.8 0.0 0.069 12.1 0.0 2.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|344211167|ref|YP_004795487.1| - 0.00095 19.3 0.0 0.39 10.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_29 PF13555.1 gi|344211167|ref|YP_004795487.1| - 0.0015 18.0 3.3 0.018 14.5 0.6 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|344211167|ref|YP_004795487.1| - 0.0071 16.3 1.0 2.1 8.2 0.0 2.8 2 1 1 3 3 3 1 AAA domain DUF258 PF03193.11 gi|344211167|ref|YP_004795487.1| - 0.009 15.2 0.0 0.034 13.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_11 PF13086.1 gi|344211167|ref|YP_004795487.1| - 0.011 15.2 0.0 1.5 8.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|344211167|ref|YP_004795487.1| - 0.011 15.3 0.0 3.1 7.4 0.0 2.9 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B DnaB_C PF03796.10 gi|344211167|ref|YP_004795487.1| - 0.018 13.9 0.0 0.32 9.8 0.0 2.5 2 1 0 2 2 2 0 DnaB-like helicase C terminal domain T2SE PF00437.15 gi|344211167|ref|YP_004795487.1| - 0.035 12.9 0.3 4 6.2 0.0 2.9 3 0 0 3 3 3 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|344211167|ref|YP_004795487.1| - 0.037 13.1 0.7 3.1 6.8 0.2 2.4 2 0 0 2 2 2 0 Zeta toxin Rad51 PF08423.6 gi|344211167|ref|YP_004795487.1| - 0.04 12.8 0.1 0.16 10.8 0.0 1.9 2 0 0 2 2 2 0 Rad51 TrwB_AAD_bind PF10412.4 gi|344211167|ref|YP_004795487.1| - 0.077 11.5 0.0 5.4 5.5 0.0 2.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Guanylate_kin PF00625.16 gi|344211167|ref|YP_004795487.1| - 0.09 12.2 0.1 2.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase Mg_chelatase PF01078.16 gi|344211167|ref|YP_004795487.1| - 0.1 11.7 0.5 1.8 7.6 0.1 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Zot PF05707.7 gi|344211167|ref|YP_004795487.1| - 0.13 11.7 0.0 6.9 6.0 0.0 2.5 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) PhoH PF02562.11 gi|344211167|ref|YP_004795487.1| - 0.13 11.4 1.5 1.4 8.1 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein NTPase_1 PF03266.10 gi|344211167|ref|YP_004795487.1| - 0.13 11.9 0.6 3.3 7.3 0.0 2.9 3 0 0 3 3 3 0 NTPase DAP3 PF10236.4 gi|344211167|ref|YP_004795487.1| - 0.15 10.9 0.0 9 5.1 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Saccharop_dh_N PF04455.7 gi|344211168|ref|YP_004795488.1| - 3e-39 133.2 0.0 6.1e-39 132.2 0.0 1.5 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|344211168|ref|YP_004795488.1| - 2.7e-05 23.9 0.1 0.0024 17.6 0.0 2.5 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.12 gi|344211168|ref|YP_004795488.1| - 0.037 13.1 0.0 0.082 12.0 0.0 1.5 1 0 0 1 1 1 0 Deoxyhypusine synthase TPP_enzyme_N PF02776.13 gi|344211170|ref|YP_004795490.1| - 1.9e-42 144.6 1.3 1.2e-38 132.3 0.0 2.6 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|344211170|ref|YP_004795490.1| - 5.3e-38 129.9 0.1 9.4e-38 129.1 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|344211170|ref|YP_004795490.1| - 2.2e-33 114.9 0.4 7.9e-33 113.1 0.2 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DUF159 PF02586.9 gi|344211171|ref|YP_004795491.1| - 1.7e-62 210.6 0.0 1.9e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 HTH_Tnp_Tc3_2 PF01498.13 gi|344211172|ref|YP_004795492.1| - 0.089 12.8 0.0 0.093 12.7 0.0 1.1 1 0 0 1 1 1 0 Transposase PALP PF00291.20 gi|344211173|ref|YP_004795493.1| - 2.2e-53 181.4 0.9 2.5e-53 181.2 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|344211173|ref|YP_004795493.1| - 0.082 12.4 0.4 0.51 9.9 0.3 2.1 1 1 0 1 1 1 0 Zinc-binding dehydrogenase eIF-5_eIF-2B PF01873.12 gi|344211174|ref|YP_004795494.1| - 5.5e-26 90.6 0.0 8e-26 90.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|344211174|ref|YP_004795494.1| - 5.8e-08 32.4 1.4 8.7e-08 31.8 0.9 1.3 1 0 0 1 1 1 1 TRAM domain zf-ribbon_3 PF13248.1 gi|344211174|ref|YP_004795494.1| - 0.068 12.3 0.8 8.8 5.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|344211174|ref|YP_004795494.1| - 0.084 12.3 1.9 0.35 10.3 1.4 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HTH_20 PF12840.2 gi|344211175|ref|YP_004795495.1| - 0.0017 18.0 1.3 0.0044 16.7 0.1 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain DICT PF10069.4 gi|344211176|ref|YP_004795496.1| - 2.6e-22 78.7 0.0 4.3e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems PGA_cap PF09587.5 gi|344211177|ref|YP_004795497.1| - 2.5e-68 230.1 0.0 3.1e-68 229.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap FAD_binding_2 PF00890.19 gi|344211179|ref|YP_004795499.1| - 3.7e-91 306.0 3.1 4.6e-91 305.7 2.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|344211179|ref|YP_004795499.1| - 6.2e-21 74.5 0.0 1.3e-20 73.5 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|344211179|ref|YP_004795499.1| - 6.1e-08 31.9 2.2 2.3e-07 30.0 1.1 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344211179|ref|YP_004795499.1| - 0.00025 21.0 4.6 0.017 15.0 3.2 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|344211179|ref|YP_004795499.1| - 0.00059 19.0 1.0 0.00094 18.3 0.7 1.4 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|344211179|ref|YP_004795499.1| - 0.0013 17.2 3.3 0.75 8.1 1.1 3.0 3 0 0 3 3 3 2 HI0933-like protein Shikimate_DH PF01488.15 gi|344211179|ref|YP_004795499.1| - 0.012 15.6 0.0 0.037 14.1 0.1 1.7 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|344211179|ref|YP_004795499.1| - 0.014 14.8 0.1 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|344211179|ref|YP_004795499.1| - 0.041 12.7 0.5 0.075 11.8 0.3 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|344211179|ref|YP_004795499.1| - 0.056 13.5 2.3 0.098 12.7 1.5 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|344211179|ref|YP_004795499.1| - 0.1 12.4 0.7 0.26 11.1 0.5 1.7 2 0 0 2 2 2 0 ThiF family Thi4 PF01946.12 gi|344211179|ref|YP_004795499.1| - 0.15 11.1 2.9 2.6 7.0 0.3 2.4 2 0 0 2 2 2 0 Thi4 family NAD_binding_8 PF13450.1 gi|344211179|ref|YP_004795499.1| - 0.19 11.7 3.6 0.19 11.7 0.8 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Na_H_antiporter PF03553.9 gi|344211180|ref|YP_004795500.1| - 1.4e-53 181.9 43.9 2.2e-52 178.0 14.6 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family ABC_tran PF00005.22 gi|344211181|ref|YP_004795501.1| - 6e-33 114.0 0.0 1.3e-32 113.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|344211181|ref|YP_004795501.1| - 3e-13 49.5 0.1 3e-13 49.5 0.1 3.1 4 0 0 4 4 4 1 TOBE domain AAA_21 PF13304.1 gi|344211181|ref|YP_004795501.1| - 3.2e-08 33.9 0.0 9.4e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|344211181|ref|YP_004795501.1| - 3.8e-08 33.3 0.6 4.6e-05 23.4 0.0 3.4 2 1 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|344211181|ref|YP_004795501.1| - 9.6e-05 22.5 0.0 0.00022 21.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344211181|ref|YP_004795501.1| - 0.0022 18.0 0.6 0.0072 16.3 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|344211181|ref|YP_004795501.1| - 0.0027 16.9 0.0 0.12 11.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|344211181|ref|YP_004795501.1| - 0.0029 17.8 0.2 0.051 13.7 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|344211181|ref|YP_004795501.1| - 0.0063 15.1 0.2 0.056 12.0 0.0 2.3 2 1 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|344211181|ref|YP_004795501.1| - 0.014 14.5 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|344211181|ref|YP_004795501.1| - 0.021 14.7 0.1 0.87 9.5 0.1 2.9 1 1 1 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|344211181|ref|YP_004795501.1| - 0.023 14.4 0.1 0.095 12.4 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|344211181|ref|YP_004795501.1| - 0.026 13.9 0.6 0.23 10.8 0.0 2.5 2 1 1 3 3 3 0 AAA domain Rad17 PF03215.10 gi|344211181|ref|YP_004795501.1| - 0.034 12.8 0.0 0.05 12.2 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|344211181|ref|YP_004795501.1| - 0.041 14.6 0.1 0.13 13.1 0.1 1.8 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|344211181|ref|YP_004795501.1| - 0.093 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|344211181|ref|YP_004795501.1| - 0.093 12.4 0.0 0.26 11.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|344211181|ref|YP_004795501.1| - 0.13 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain BPD_transp_1 PF00528.17 gi|344211182|ref|YP_004795502.1| - 2e-31 108.9 41.9 3.5e-17 62.5 9.2 3.5 3 1 1 4 4 4 2 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.15 gi|344211182|ref|YP_004795502.1| - 7.9 5.4 9.5 22 3.9 4.6 2.9 2 1 0 2 2 2 0 E1-E2 ATPase SBP_bac_8 PF13416.1 gi|344211183|ref|YP_004795503.1| - 1.8e-20 73.8 0.1 2.3e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|344211183|ref|YP_004795503.1| - 4.8e-18 65.3 0.0 6.7e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344211183|ref|YP_004795503.1| - 2e-12 47.5 0.2 2.6e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|344211183|ref|YP_004795503.1| - 0.00027 20.6 0.0 0.00043 19.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344211183|ref|YP_004795503.1| - 0.19 11.8 2.8 0.59 10.2 1.9 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AP_endonuc_2 PF01261.19 gi|344211185|ref|YP_004795505.1| - 5.4e-09 35.6 0.1 5.1e-07 29.1 0.0 2.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel E1_dh PF00676.15 gi|344211186|ref|YP_004795506.1| - 2.9e-77 259.3 0.0 3.8e-77 258.9 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|344211186|ref|YP_004795506.1| - 1.9e-05 23.7 0.0 3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|344211186|ref|YP_004795506.1| - 0.00038 19.3 0.0 0.00071 18.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.1 gi|344211186|ref|YP_004795506.1| - 0.085 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FliD_C PF07195.7 gi|344211187|ref|YP_004795507.1| - 0.024 13.9 0.0 0.2 10.9 0.0 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Nramp PF01566.13 gi|344211188|ref|YP_004795508.1| - 3.7e-63 213.4 33.4 5.8e-63 212.8 23.1 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DUF3961 PF13106.1 gi|344211188|ref|YP_004795508.1| - 0.91 9.1 5.4 0.22 11.1 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3961) AAA_19 PF13245.1 gi|344211189|ref|YP_004795509.1| - 0.0011 18.6 0.6 0.0048 16.6 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|344211189|ref|YP_004795509.1| - 0.0012 18.8 0.1 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain T2SE PF00437.15 gi|344211189|ref|YP_004795509.1| - 0.037 12.9 0.2 0.26 10.1 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein Y2_Tnp PF04986.8 gi|344211189|ref|YP_004795509.1| - 0.037 13.7 0.0 0.078 12.7 0.0 1.5 2 0 0 2 2 2 0 Putative transposase AAA_30 PF13604.1 gi|344211189|ref|YP_004795509.1| - 0.053 13.0 1.0 0.13 11.8 0.7 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344211189|ref|YP_004795509.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.5 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|344211189|ref|YP_004795509.1| - 0.12 11.9 0.1 0.24 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|344211189|ref|YP_004795509.1| - 0.17 11.2 3.3 1.4 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain VPEP PF07589.6 gi|344211191|ref|YP_004795511.1| - 0.0023 17.7 1.8 0.0023 17.7 1.3 2.1 2 0 0 2 2 2 1 PEP-CTERM motif PGPGW PF09656.5 gi|344211191|ref|YP_004795511.1| - 0.023 13.9 3.8 0.026 13.8 2.6 1.1 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|344211191|ref|YP_004795511.1| - 0.34 10.9 4.8 0.53 10.3 3.3 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) Beta-Casp PF10996.3 gi|344211192|ref|YP_004795512.1| - 2e-30 105.2 0.0 4.2e-30 104.2 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|344211192|ref|YP_004795512.1| - 1.2e-21 77.2 3.8 2.1e-21 76.4 2.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|344211192|ref|YP_004795512.1| - 8.3e-15 54.3 0.0 1.9e-14 53.2 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|344211192|ref|YP_004795512.1| - 1.7e-11 44.0 0.3 3.7e-11 42.9 0.1 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|344211192|ref|YP_004795512.1| - 4.8e-07 29.2 0.0 2.1e-06 27.1 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|344211192|ref|YP_004795512.1| - 0.00023 20.7 0.1 0.00052 19.6 0.1 1.6 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|344211192|ref|YP_004795512.1| - 0.00025 20.8 0.0 0.0005 19.8 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|344211192|ref|YP_004795512.1| - 0.02 14.5 0.0 0.055 13.1 0.0 1.7 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|344211192|ref|YP_004795512.1| - 0.1 12.3 0.1 0.27 10.9 0.1 1.7 1 0 0 1 1 1 0 KH domain Iron_transport PF10634.4 gi|344211194|ref|YP_004795514.1| - 0.00027 20.8 0.0 0.0025 17.7 0.0 2.2 2 0 0 2 2 2 1 Fe2+ transport protein GHL5 PF14872.1 gi|344211195|ref|YP_004795515.1| - 0.075 10.7 0.0 0.075 10.7 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 Dyp_perox PF04261.7 gi|344211196|ref|YP_004795516.1| - 1.1e-07 30.8 0.0 4.6e-07 28.8 0.0 1.9 1 1 0 1 1 1 1 Dyp-type peroxidase family TAT_signal PF10518.4 gi|344211196|ref|YP_004795516.1| - 0.029 14.3 0.3 0.029 14.3 0.2 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.2 gi|344211197|ref|YP_004795517.1| - 9.1e-16 57.4 3.6 1.5e-08 34.3 0.6 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|344211197|ref|YP_004795517.1| - 1.6e-09 37.2 0.7 1.8e-06 27.5 0.1 2.7 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344211197|ref|YP_004795517.1| - 3.1e-07 29.9 5.9 3.8e-05 23.2 0.5 3.0 3 1 1 4 4 4 2 MarR family TrmB PF01978.14 gi|344211197|ref|YP_004795517.1| - 3.1e-07 29.9 0.0 3.4e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|344211197|ref|YP_004795517.1| - 2.4e-06 26.8 0.0 0.00015 21.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344211197|ref|YP_004795517.1| - 3e-06 26.7 0.6 0.00029 20.3 0.1 2.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|344211197|ref|YP_004795517.1| - 0.0023 17.5 0.0 0.051 13.2 0.0 2.6 3 0 0 3 3 3 1 MarR family HTH_34 PF13601.1 gi|344211197|ref|YP_004795517.1| - 0.013 15.4 0.0 2 8.5 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|344211197|ref|YP_004795517.1| - 0.015 14.8 0.0 0.6 9.7 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain HTH_27 PF13463.1 gi|344211197|ref|YP_004795517.1| - 0.016 15.5 0.3 0.081 13.2 0.1 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|344211197|ref|YP_004795517.1| - 0.062 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator FaeA PF04703.7 gi|344211197|ref|YP_004795517.1| - 0.084 13.0 0.0 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein HTH_Crp_2 PF13545.1 gi|344211197|ref|YP_004795517.1| - 0.1 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|344211197|ref|YP_004795517.1| - 0.11 12.5 0.2 0.68 10.0 0.0 2.1 2 1 0 2 2 2 0 Penicillinase repressor DUF1129 PF06570.6 gi|344211198|ref|YP_004795518.1| - 0.022 14.0 1.2 0.028 13.7 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF3981 PF13139.1 gi|344211198|ref|YP_004795518.1| - 0.22 11.5 1.6 9.7 6.2 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3981) DUF2929 PF11151.3 gi|344211198|ref|YP_004795518.1| - 0.36 10.9 0.1 0.36 10.9 0.1 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2929) RseC_MucC PF04246.7 gi|344211198|ref|YP_004795518.1| - 1.5 8.4 6.1 1.8 8.1 0.7 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC SAM_adeno_trans PF01887.11 gi|344211200|ref|YP_004795520.1| - 1.4e-12 47.2 0.0 8.8e-12 44.6 0.0 2.1 1 1 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase HGTP_anticodon PF03129.15 gi|344211201|ref|YP_004795521.1| - 7.4e-21 73.9 0.1 1.6e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|344211201|ref|YP_004795521.1| - 6.8e-19 67.5 0.4 1.5e-18 66.4 0.3 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|344211201|ref|YP_004795521.1| - 2.5e-15 56.4 0.0 4e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF177 PF02620.12 gi|344211201|ref|YP_004795521.1| - 0.076 13.0 1.0 0.29 11.1 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized ACR, COG1399 Patatin PF01734.17 gi|344211202|ref|YP_004795522.1| - 3.3e-16 59.8 0.2 7.6e-16 58.6 0.1 1.6 1 1 0 1 1 1 1 Patatin-like phospholipase CBS PF00571.23 gi|344211204|ref|YP_004795524.1| - 3.6e-30 103.4 4.3 1.1e-15 57.0 0.3 2.1 2 0 0 2 2 2 2 CBS domain DUF1269 PF06897.7 gi|344211204|ref|YP_004795524.1| - 0.061 13.3 0.1 0.21 11.6 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) Glu_synthase PF01645.12 gi|344211205|ref|YP_004795525.1| - 1.1e-151 504.9 0.1 3.6e-149 496.6 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|344211205|ref|YP_004795525.1| - 1.9e-124 415.0 0.0 4.4e-124 413.8 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|344211205|ref|YP_004795525.1| - 1.4e-109 365.8 0.0 2.3e-109 365.0 0.0 1.4 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|344211205|ref|YP_004795525.1| - 5.9e-59 198.4 10.7 9.9e-59 197.7 7.4 1.3 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.10 gi|344211205|ref|YP_004795525.1| - 0.0047 16.1 0.6 0.0093 15.1 0.4 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|344211205|ref|YP_004795525.1| - 0.0092 14.8 5.2 0.0075 15.1 1.2 2.4 3 0 0 3 3 3 1 FMN-dependent dehydrogenase Band_7 PF01145.20 gi|344211206|ref|YP_004795526.1| - 1.9e-27 96.3 11.4 1.9e-27 96.3 7.9 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|344211206|ref|YP_004795526.1| - 0.05 13.1 0.1 0.075 12.5 0.1 1.3 1 0 0 1 1 1 0 SPFH domain-Band 7 family FB_lectin PF07367.6 gi|344211206|ref|YP_004795526.1| - 0.11 12.1 1.3 0.39 10.3 0.0 2.4 2 1 1 3 3 3 0 Fungal fruit body lectin DUF1628 PF07790.6 gi|344211207|ref|YP_004795527.1| - 0.00011 22.9 2.3 0.0002 22.0 0.7 2.1 2 1 1 3 3 3 1 Protein of unknown function (DUF1628) Epimerase PF01370.16 gi|344211208|ref|YP_004795528.1| - 1.1e-29 103.5 0.8 2.1e-28 99.3 0.6 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|344211208|ref|YP_004795528.1| - 2.5e-10 40.6 0.2 3.7e-10 40.1 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|344211208|ref|YP_004795528.1| - 2.5e-08 33.1 0.2 0.0016 17.3 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|344211208|ref|YP_004795528.1| - 9.9e-07 27.7 0.0 0.007 15.1 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|344211208|ref|YP_004795528.1| - 0.006 15.8 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Pyr_redox PF00070.22 gi|344211208|ref|YP_004795528.1| - 0.068 13.5 0.0 0.17 12.2 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|344211208|ref|YP_004795528.1| - 0.072 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Regulator_TrmB PF11495.3 gi|344211209|ref|YP_004795529.1| - 1.2e-58 197.9 0.0 1.4e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|344211209|ref|YP_004795529.1| - 9.2e-18 63.7 0.0 1.9e-17 62.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344211209|ref|YP_004795529.1| - 0.024 14.2 0.0 0.055 13.1 0.0 1.7 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|344211209|ref|YP_004795529.1| - 0.034 14.2 0.0 0.084 12.9 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|344211209|ref|YP_004795529.1| - 0.046 13.3 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain YflT PF11181.3 gi|344211209|ref|YP_004795529.1| - 0.091 12.9 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 Heat induced stress protein YflT Glyco_hydro_3 PF00933.16 gi|344211210|ref|YP_004795530.1| - 4.5e-67 226.1 0.0 6e-67 225.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|344211210|ref|YP_004795530.1| - 3.2e-40 138.0 0.1 7.8e-40 136.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|344211210|ref|YP_004795530.1| - 1.9e-11 43.7 0.1 3.8e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain TAT_signal PF10518.4 gi|344211210|ref|YP_004795530.1| - 6e-05 22.7 6.8 0.0002 21.1 4.7 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|344211210|ref|YP_004795530.1| - 0.16 11.1 3.6 0.56 9.4 2.5 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fe-ADH_2 PF13685.1 gi|344211211|ref|YP_004795531.1| - 1e-61 208.4 1.7 1.3e-61 208.0 1.2 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|344211211|ref|YP_004795531.1| - 7.1e-20 70.9 4.3 1.4e-19 69.9 3.0 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|344211211|ref|YP_004795531.1| - 4.3e-11 42.2 0.2 1.2e-10 40.8 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase NUDIX PF00293.23 gi|344211212|ref|YP_004795532.1| - 0.028 14.0 0.2 0.039 13.6 0.1 1.3 1 0 0 1 1 1 0 NUDIX domain Peptidase_S9 PF00326.16 gi|344211213|ref|YP_004795533.1| - 6.2e-50 169.3 0.0 1.1e-49 168.6 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|344211213|ref|YP_004795533.1| - 3e-13 49.7 0.0 6.3e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|344211213|ref|YP_004795533.1| - 3.6e-12 46.2 0.0 2.1e-08 33.9 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|344211213|ref|YP_004795533.1| - 4.1e-12 46.4 1.0 1.9e-11 44.3 0.7 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|344211213|ref|YP_004795533.1| - 4.2e-10 39.2 0.0 7e-09 35.2 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family PD40 PF07676.7 gi|344211213|ref|YP_004795533.1| - 2.1e-09 36.8 4.3 7.4e-06 25.5 0.2 4.5 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.10 gi|344211213|ref|YP_004795533.1| - 1.5e-06 27.0 0.0 2.2e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.7 gi|344211213|ref|YP_004795533.1| - 3.3e-06 25.8 0.0 0.00072 18.1 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.16 gi|344211213|ref|YP_004795533.1| - 9.6e-06 24.4 0.0 0.53 8.8 0.0 4.0 3 1 1 4 4 4 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_1 PF00561.15 gi|344211213|ref|YP_004795533.1| - 1.5e-05 24.7 0.0 0.007 15.9 0.0 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|344211213|ref|YP_004795533.1| - 4.8e-05 23.0 0.2 0.0012 18.4 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|344211213|ref|YP_004795533.1| - 0.00053 19.7 0.0 0.1 12.4 0.0 2.7 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_2 PF02230.11 gi|344211213|ref|YP_004795533.1| - 0.001 18.5 0.0 0.27 10.6 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|344211213|ref|YP_004795533.1| - 0.0044 16.7 0.0 0.15 11.7 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|344211213|ref|YP_004795533.1| - 0.012 15.0 0.0 0.026 13.9 0.0 1.6 1 0 0 1 1 1 0 Putative esterase Abhydrolase_4 PF08386.5 gi|344211213|ref|YP_004795533.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Peptidase_S28 PF05577.7 gi|344211213|ref|YP_004795533.1| - 0.091 11.3 0.0 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF829 PF05705.9 gi|344211213|ref|YP_004795533.1| - 0.096 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) DUF2339 PF10101.4 gi|344211214|ref|YP_004795534.1| - 1.3e-43 149.3 77.0 1.8e-25 89.3 42.3 2.8 1 1 1 2 2 2 2 Predicted membrane protein (DUF2339) PspB PF06667.7 gi|344211214|ref|YP_004795534.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Phage shock protein B HALZ PF02183.13 gi|344211214|ref|YP_004795534.1| - 0.045 13.4 0.3 0.075 12.7 0.2 1.3 1 0 0 1 1 1 0 Homeobox associated leucine zipper Pox_A_type_inc PF04508.7 gi|344211214|ref|YP_004795534.1| - 0.087 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat bZIP_2 PF07716.10 gi|344211214|ref|YP_004795534.1| - 0.14 11.9 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Basic region leucine zipper Glyco_trans_4_4 PF13579.1 gi|344211215|ref|YP_004795535.1| - 8.9e-20 71.4 10.4 1.2e-18 67.7 6.2 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|344211215|ref|YP_004795535.1| - 2.1e-14 53.3 0.0 4.3e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344211215|ref|YP_004795535.1| - 1.1e-09 38.2 0.0 7.5e-09 35.5 0.0 2.3 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|344211215|ref|YP_004795535.1| - 7.5e-05 22.5 0.0 0.00033 20.4 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like Na_H_antiporter PF03553.9 gi|344211216|ref|YP_004795536.1| - 6.7e-40 136.9 32.5 6.2e-38 130.5 12.1 3.8 3 1 0 3 3 3 2 Na+/H+ antiporter family DcuC PF03606.10 gi|344211216|ref|YP_004795536.1| - 4.9e-06 25.0 11.2 0.007 14.6 4.4 2.3 2 0 0 2 2 2 2 C4-dicarboxylate anaerobic carrier Glycoprotein_B PF00606.13 gi|344211216|ref|YP_004795536.1| - 8.2 4.3 5.7 13 3.6 4.0 1.2 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B ResIII PF04851.10 gi|344211217|ref|YP_004795537.1| - 2.4e-17 63.3 0.0 7.3e-17 61.7 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|344211217|ref|YP_004795537.1| - 2.8e-14 52.6 0.0 4.4e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|344211217|ref|YP_004795537.1| - 3.1e-13 49.4 0.0 6.3e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|344211217|ref|YP_004795537.1| - 3.5e-10 39.6 0.0 7.4e-10 38.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_25 PF13481.1 gi|344211217|ref|YP_004795537.1| - 0.00029 20.2 1.8 0.0038 16.6 0.2 3.0 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|344211217|ref|YP_004795537.1| - 0.00056 19.6 0.0 0.0017 18.0 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|344211217|ref|YP_004795537.1| - 0.00062 19.9 0.6 0.0058 16.7 0.1 2.6 2 1 0 2 2 1 1 AAA domain AAA PF00004.24 gi|344211217|ref|YP_004795537.1| - 0.0018 18.4 0.0 0.005 17.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|344211217|ref|YP_004795537.1| - 0.034 14.0 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|344211217|ref|YP_004795537.1| - 0.043 13.4 0.0 0.11 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|344211217|ref|YP_004795537.1| - 0.064 12.9 0.6 0.73 9.5 0.0 2.9 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|344211217|ref|YP_004795537.1| - 0.1 12.0 1.9 2.6 7.4 0.3 2.9 3 0 0 3 3 3 0 AAA-like domain AAA_11 PF13086.1 gi|344211217|ref|YP_004795537.1| - 0.16 11.5 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|344211217|ref|YP_004795537.1| - 0.17 12.0 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MCPsignal PF00015.16 gi|344211218|ref|YP_004795538.1| - 3.8e-53 180.1 60.8 6e-51 173.0 24.3 3.1 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|344211218|ref|YP_004795538.1| - 3.8e-36 124.1 0.7 3.8e-36 124.1 0.5 2.7 3 0 0 3 3 2 1 Protoglobin DUF948 PF06103.6 gi|344211218|ref|YP_004795538.1| - 1.3e-05 24.9 33.6 0.0031 17.3 1.3 5.5 3 2 1 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.1 gi|344211218|ref|YP_004795538.1| - 4.8e-05 23.2 21.6 0.00054 19.8 2.0 3.6 3 2 1 4 4 3 2 Domain of unknown function (DUF4200) BLOC1_2 PF10046.4 gi|344211218|ref|YP_004795538.1| - 0.00014 21.9 33.8 0.02 15.0 3.7 5.9 3 2 3 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4047 PF13256.1 gi|344211218|ref|YP_004795538.1| - 0.0002 21.3 2.3 0.0002 21.3 1.6 3.1 3 1 0 3 3 2 1 Domain of unknown function (DUF4047) Laminin_II PF06009.7 gi|344211218|ref|YP_004795538.1| - 0.0004 20.1 38.4 0.11 12.3 3.6 4.7 3 1 2 5 5 4 3 Laminin Domain II Spc7 PF08317.6 gi|344211218|ref|YP_004795538.1| - 0.027 13.1 26.9 0.099 11.2 4.5 2.8 3 0 0 3 3 3 0 Spc7 kinetochore protein Exonuc_VII_S PF02609.11 gi|344211218|ref|YP_004795538.1| - 0.036 13.8 5.7 3.9 7.3 0.7 3.8 3 0 0 3 3 3 0 Exonuclease VII small subunit NPV_P10 PF05531.7 gi|344211218|ref|YP_004795538.1| - 0.14 12.4 40.7 0.55 10.5 1.4 6.4 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein COG2 PF06148.6 gi|344211218|ref|YP_004795538.1| - 0.18 11.7 27.1 2.6 7.9 1.6 5.5 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.7 gi|344211218|ref|YP_004795538.1| - 0.19 11.5 34.3 0.026 14.3 2.7 4.4 2 1 2 4 4 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Bac_globin PF01152.16 gi|344211218|ref|YP_004795538.1| - 0.2 11.6 0.0 0.2 11.6 0.0 3.8 3 3 2 5 5 3 0 Bacterial-like globin ISG65-75 PF11727.3 gi|344211218|ref|YP_004795538.1| - 0.38 9.7 35.0 0.49 9.4 8.4 3.4 1 1 2 3 3 3 0 Invariant surface glycoprotein Reo_sigmaC PF04582.7 gi|344211218|ref|YP_004795538.1| - 0.48 9.5 33.9 0.028 13.6 5.2 3.6 2 1 1 4 4 4 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|344211218|ref|YP_004795538.1| - 0.49 9.9 33.0 0.56 9.7 6.5 3.0 2 1 2 4 4 3 0 IncA protein Muted PF14942.1 gi|344211218|ref|YP_004795538.1| - 0.58 10.0 25.5 0.42 10.4 3.5 3.7 3 1 1 4 4 4 0 Organelle biogenesis, Muted-like protein Syntaxin-6_N PF09177.6 gi|344211218|ref|YP_004795538.1| - 0.58 10.6 29.0 1.4 9.3 0.7 5.2 3 2 1 4 4 4 0 Syntaxin 6, N-terminal Flagellin_IN PF07196.8 gi|344211218|ref|YP_004795538.1| - 0.6 10.1 6.4 2.1 8.3 0.5 3.0 2 0 0 2 2 2 0 Flagellin hook IN motif LXG PF04740.7 gi|344211218|ref|YP_004795538.1| - 0.61 9.8 42.3 0.28 10.9 7.7 4.8 3 2 2 5 5 5 0 LXG domain of WXG superfamily TMPIT PF07851.8 gi|344211218|ref|YP_004795538.1| - 0.66 8.9 13.9 2.2 7.2 1.3 2.7 2 0 0 2 2 2 0 TMPIT-like protein LOH1CR12 PF10158.4 gi|344211218|ref|YP_004795538.1| - 0.7 9.6 19.4 0.11 12.2 1.4 4.1 3 2 1 4 4 3 0 Tumour suppressor protein Atg14 PF10186.4 gi|344211218|ref|YP_004795538.1| - 0.78 8.6 12.2 2.3 7.1 1.5 2.6 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 TMP_2 PF06791.8 gi|344211218|ref|YP_004795538.1| - 0.92 9.0 38.1 0.63 9.6 7.9 3.9 2 1 3 5 5 5 0 Prophage tail length tape measure protein COG5 PF10392.4 gi|344211218|ref|YP_004795538.1| - 0.95 9.4 15.9 4.2 7.3 0.6 4.6 1 1 4 5 5 5 0 Golgi transport complex subunit 5 Fib_alpha PF08702.5 gi|344211218|ref|YP_004795538.1| - 1.1 9.3 25.2 1.2 9.2 3.6 4.6 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family RmuC PF02646.11 gi|344211218|ref|YP_004795538.1| - 1.2 7.9 20.7 0.98 8.1 1.9 4.4 3 2 2 5 5 5 0 RmuC family DUF1664 PF07889.7 gi|344211218|ref|YP_004795538.1| - 1.3 8.8 32.0 1.2 8.9 2.2 4.8 3 2 2 5 5 4 0 Protein of unknown function (DUF1664) Tropomyosin PF00261.15 gi|344211218|ref|YP_004795538.1| - 1.3 8.0 40.3 0.095 11.7 10.9 2.5 2 0 0 2 2 2 0 Tropomyosin AIP3 PF03915.8 gi|344211218|ref|YP_004795538.1| - 1.4 7.7 29.2 3.8 6.3 10.1 2.8 1 1 1 2 2 2 0 Actin interacting protein 3 DUF3584 PF12128.3 gi|344211218|ref|YP_004795538.1| - 1.5 6.0 39.2 1.1 6.4 16.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3584) Vip3A_N PF12495.3 gi|344211218|ref|YP_004795538.1| - 1.5 8.4 10.0 18 4.9 0.5 3.6 2 2 0 2 2 2 0 Vegetative insecticide protein 3A N terminal GAS PF13851.1 gi|344211218|ref|YP_004795538.1| - 2.4 7.3 19.9 1.1 8.3 4.1 3.7 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Spectrin PF00435.16 gi|344211218|ref|YP_004795538.1| - 2.5 8.4 26.6 0.26 11.5 3.3 4.4 2 2 2 4 4 4 0 Spectrin repeat ERM PF00769.14 gi|344211218|ref|YP_004795538.1| - 3.9 6.9 31.1 4.4 6.7 8.8 2.5 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Allexi_40kDa PF05549.6 gi|344211218|ref|YP_004795538.1| - 4.3 6.5 21.8 0.35 10.1 3.3 3.3 2 1 1 4 4 4 0 Allexivirus 40kDa protein DUF904 PF06005.7 gi|344211218|ref|YP_004795538.1| - 4.4 7.6 12.6 0.12 12.6 0.4 3.8 3 2 0 3 3 2 0 Protein of unknown function (DUF904) Mnd1 PF03962.10 gi|344211218|ref|YP_004795538.1| - 5.4 6.6 32.1 1.2 8.7 2.8 4.0 2 1 2 4 4 4 0 Mnd1 family Dor1 PF04124.7 gi|344211218|ref|YP_004795538.1| - 5.6 5.3 21.9 2.1 6.7 3.0 3.7 2 1 1 4 4 3 0 Dor1-like family YjcZ PF13990.1 gi|344211218|ref|YP_004795538.1| - 6.5 5.7 17.9 2.9 6.9 2.6 2.9 2 2 0 2 2 2 0 YjcZ-like protein Hemerythrin PF01814.18 gi|344211218|ref|YP_004795538.1| - 6.7 6.8 17.5 5 7.2 0.8 4.4 2 1 2 4 4 3 0 Hemerythrin HHE cation binding domain Prefoldin_2 PF01920.15 gi|344211218|ref|YP_004795538.1| - 7.1 6.4 25.7 6.3 6.6 0.1 5.5 3 2 2 5 5 5 0 Prefoldin subunit Syntaxin PF00804.20 gi|344211218|ref|YP_004795538.1| - 7.3 6.8 34.8 0.41 10.8 3.3 5.0 2 1 2 4 4 3 0 Syntaxin PspA_IM30 PF04012.7 gi|344211218|ref|YP_004795538.1| - 7.7 5.8 40.8 0.42 9.9 10.7 3.5 2 2 1 3 3 3 0 PspA/IM30 family Hormone_1 PF00103.15 gi|344211218|ref|YP_004795538.1| - 8.2 5.7 9.0 8.6 5.6 0.1 3.6 3 2 2 5 5 5 0 Somatotropin hormone family FlaC_arch PF05377.6 gi|344211218|ref|YP_004795538.1| - 8.6 6.3 24.1 11 6.0 0.2 6.3 4 2 2 6 6 6 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.17 gi|344211218|ref|YP_004795538.1| - 9.3 6.3 31.7 5.6 7.0 1.6 5.1 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain zf-C4H2 PF10146.4 gi|344211218|ref|YP_004795538.1| - 9.9 6.1 22.9 18 5.2 5.1 3.4 3 0 0 3 3 3 0 Zinc finger-containing protein Methyltransf_11 PF08241.7 gi|344211220|ref|YP_004795540.1| - 2.2e-09 37.7 0.0 3.3e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344211220|ref|YP_004795540.1| - 6.8e-07 29.5 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344211220|ref|YP_004795540.1| - 2.2e-06 27.6 0.0 3.1e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344211220|ref|YP_004795540.1| - 6e-06 25.9 0.0 7.5e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|344211220|ref|YP_004795540.1| - 7.3e-06 25.2 0.0 9.4e-06 24.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.1 gi|344211220|ref|YP_004795540.1| - 1.7e-05 24.6 0.0 1.9e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211220|ref|YP_004795540.1| - 4.4e-05 24.0 0.0 5.7e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211220|ref|YP_004795540.1| - 0.00012 22.4 0.0 0.00016 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|344211220|ref|YP_004795540.1| - 0.00047 19.5 0.0 0.00051 19.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|344211220|ref|YP_004795540.1| - 0.00076 18.8 0.0 0.00094 18.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|344211220|ref|YP_004795540.1| - 0.011 14.9 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family TPMT PF05724.6 gi|344211220|ref|YP_004795540.1| - 0.033 13.6 0.0 0.042 13.2 0.0 1.1 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) N6_N4_Mtase PF01555.13 gi|344211220|ref|YP_004795540.1| - 0.095 12.1 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 DNA methylase Pterin_bind PF00809.17 gi|344211221|ref|YP_004795541.1| - 2.9e-71 239.1 0.0 5e-71 238.3 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|344211221|ref|YP_004795541.1| - 2e-12 47.5 0.0 3.9e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|344211221|ref|YP_004795541.1| - 3.9e-10 39.6 0.0 1.2e-09 38.0 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.1 gi|344211221|ref|YP_004795541.1| - 0.0016 17.6 2.6 0.44 9.7 0.0 3.4 2 1 0 3 3 3 2 Phosphoenolpyruvate phosphomutase DUF21 PF01595.15 gi|344211223|ref|YP_004795543.1| - 7.7e-06 25.3 0.4 8.8e-06 25.1 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 SHOCT PF09851.4 gi|344211223|ref|YP_004795543.1| - 0.00021 20.6 1.4 0.00042 19.6 0.9 1.5 1 0 0 1 1 1 1 Short C-terminal domain Snf7 PF03357.16 gi|344211223|ref|YP_004795543.1| - 0.23 10.8 1.0 0.31 10.4 0.7 1.1 1 0 0 1 1 1 0 Snf7 Form_Nir_trans PF01226.12 gi|344211224|ref|YP_004795544.1| - 6.3e-50 169.4 17.6 7.3e-50 169.2 12.2 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter CReP_N PF10472.4 gi|344211224|ref|YP_004795544.1| - 0.076 11.7 0.8 0.11 11.2 0.5 1.1 1 0 0 1 1 1 0 eIF2-alpha phosphatase phosphorylation constitutive repressor AICARFT_IMPCHas PF01808.13 gi|344211225|ref|YP_004795545.1| - 1e-87 294.1 0.1 1.4e-87 293.7 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|344211225|ref|YP_004795545.1| - 4.9e-40 137.0 0.0 1.1e-39 135.8 0.0 1.6 2 0 0 2 2 2 1 Formyl transferase DRTGG PF07085.7 gi|344211225|ref|YP_004795545.1| - 0.042 13.4 0.0 0.26 10.9 0.0 2.4 2 0 0 2 2 2 0 DRTGG domain Lipl32 PF12103.3 gi|344211225|ref|YP_004795545.1| - 0.094 12.1 0.2 5.5 6.4 0.1 2.3 1 1 1 2 2 2 0 Surface lipoprotein of Spirochaetales order DUF4401 PF14351.1 gi|344211226|ref|YP_004795546.1| - 0.14 11.1 9.9 0.21 10.5 6.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) ADH_zinc_N PF00107.21 gi|344211227|ref|YP_004795547.1| - 1.1e-27 96.1 0.4 1.9e-27 95.3 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|344211227|ref|YP_004795547.1| - 1.1e-26 92.7 0.3 2.9e-26 91.3 0.2 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain 2-Hacid_dh_C PF02826.14 gi|344211227|ref|YP_004795547.1| - 0.0021 17.2 0.1 0.0038 16.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|344211227|ref|YP_004795547.1| - 0.0029 17.1 0.2 0.0051 16.3 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_11 PF08241.7 gi|344211227|ref|YP_004795547.1| - 0.0072 16.7 0.1 0.019 15.4 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain TrkA_N PF02254.13 gi|344211227|ref|YP_004795547.1| - 0.019 14.9 0.5 0.046 13.7 0.2 1.7 2 0 0 2 2 2 0 TrkA-N domain ELFV_dehydrog PF00208.16 gi|344211227|ref|YP_004795547.1| - 0.046 13.2 0.2 0.063 12.8 0.1 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Lyase_1 PF00206.15 gi|344211228|ref|YP_004795548.1| - 5.9e-51 173.5 0.0 7.6e-51 173.1 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|344211228|ref|YP_004795548.1| - 9.7e-42 141.4 0.0 2.2e-41 140.3 0.0 1.6 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal MFS_1 PF07690.11 gi|344211229|ref|YP_004795549.1| - 7e-53 179.5 56.1 3.5e-28 98.3 17.5 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|344211229|ref|YP_004795549.1| - 1.4e-12 46.9 28.2 5.9e-07 28.4 7.1 2.5 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|344211229|ref|YP_004795549.1| - 0.0028 17.4 1.6 0.073 12.8 0.0 3.1 2 1 1 3 3 3 1 MFS_1 like family DUF697 PF05128.7 gi|344211229|ref|YP_004795549.1| - 2.2 7.7 6.0 18 4.7 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF697) OATP PF03137.15 gi|344211229|ref|YP_004795549.1| - 2.6 5.9 11.2 0.67 7.9 0.8 2.4 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Pribosyltran PF00156.22 gi|344211230|ref|YP_004795550.1| - 5.1e-21 74.6 0.1 7.1e-21 74.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|344211230|ref|YP_004795550.1| - 0.0017 17.5 0.0 0.0028 16.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|344211230|ref|YP_004795550.1| - 0.019 14.2 0.0 0.12 11.6 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl transferase Peptidase_M20 PF01546.23 gi|344211231|ref|YP_004795551.1| - 2.1e-26 92.6 0.4 2.9e-26 92.1 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|344211231|ref|YP_004795551.1| - 5.5e-22 77.6 0.0 9.1e-22 76.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Orn_Arg_deC_N PF02784.11 gi|344211232|ref|YP_004795552.1| - 1.6e-37 129.0 0.0 2.1e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|344211232|ref|YP_004795552.1| - 6.5e-17 61.3 0.0 1e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|344211232|ref|YP_004795552.1| - 5.3e-07 29.4 0.2 8.8e-07 28.6 0.2 1.3 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain TFX_C PF14601.1 gi|344211233|ref|YP_004795553.1| - 1.4e-29 101.6 0.1 2e-29 101.1 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|344211233|ref|YP_004795553.1| - 1.4e-06 27.5 0.6 2.1e-06 26.9 0.4 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|344211233|ref|YP_004795553.1| - 0.0045 17.1 0.3 0.0097 16.0 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|344211233|ref|YP_004795553.1| - 0.024 14.4 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|344211233|ref|YP_004795553.1| - 0.026 14.5 0.1 0.072 13.1 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|344211233|ref|YP_004795553.1| - 0.028 13.8 0.1 0.043 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|344211233|ref|YP_004795553.1| - 0.035 13.4 0.2 0.056 12.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|344211233|ref|YP_004795553.1| - 0.04 13.7 0.1 0.078 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix MarR_2 PF12802.2 gi|344211233|ref|YP_004795553.1| - 0.086 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 MarR family Aldedh PF00171.17 gi|344211235|ref|YP_004795555.1| - 1.1e-177 591.0 0.0 1.3e-177 590.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|344211235|ref|YP_004795555.1| - 0.16 11.1 0.0 0.29 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1487) PE PF00934.15 gi|344211235|ref|YP_004795555.1| - 0.24 11.5 1.9 0.53 10.4 0.5 2.1 2 0 0 2 2 2 0 PE family KfrA_N PF11740.3 gi|344211235|ref|YP_004795555.1| - 2.1 8.8 6.3 0.3 11.5 0.3 2.5 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term THDPS_N_2 PF14805.1 gi|344211237|ref|YP_004795557.1| - 1.1e-19 70.0 0.3 1.6e-19 69.5 0.2 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|344211237|ref|YP_004795557.1| - 1.3e-12 46.6 4.8 4.9e-05 22.6 0.7 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344211237|ref|YP_004795557.1| - 2.3e-05 23.8 11.6 0.00021 20.7 0.5 3.4 2 1 2 4 4 4 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.9 gi|344211238|ref|YP_004795558.1| - 2.8e-36 124.1 0.0 4.7e-36 123.4 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|344211238|ref|YP_004795558.1| - 9.8e-23 80.4 2.4 3e-22 78.8 1.9 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|344211238|ref|YP_004795558.1| - 8.2e-05 21.7 0.1 0.0001 21.3 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase CoA_binding PF02629.14 gi|344211238|ref|YP_004795558.1| - 0.00084 19.8 4.0 0.0015 18.9 2.8 1.4 1 0 0 1 1 1 1 CoA binding domain NAD_binding_10 PF13460.1 gi|344211238|ref|YP_004795558.1| - 0.0041 17.1 3.4 0.006 16.6 2.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_3 PF03447.11 gi|344211238|ref|YP_004795558.1| - 0.0043 17.4 1.2 0.0082 16.5 0.8 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Peripla_BP_6 PF13458.1 gi|344211238|ref|YP_004795558.1| - 0.015 14.6 1.1 0.02 14.2 0.8 1.3 1 0 0 1 1 1 0 Periplasmic binding protein RmlD_sub_bind PF04321.12 gi|344211238|ref|YP_004795558.1| - 0.067 12.0 1.9 0.13 11.1 0.8 1.7 1 1 1 2 2 2 0 RmlD substrate binding domain DHDPS PF00701.17 gi|344211239|ref|YP_004795559.1| - 1.6e-93 312.5 0.0 1.8e-93 312.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|344211239|ref|YP_004795559.1| - 0.007 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|344211239|ref|YP_004795559.1| - 0.12 11.5 0.1 0.19 10.8 0.1 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase NYN PF01936.13 gi|344211241|ref|YP_004795561.1| - 2.1e-37 128.6 0.1 2.5e-37 128.3 0.1 1.0 1 0 0 1 1 1 1 NYN domain FMO-like PF00743.14 gi|344211241|ref|YP_004795561.1| - 0.023 12.9 0.1 0.03 12.5 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Clathrin PF00637.15 gi|344211241|ref|YP_004795561.1| - 0.053 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS TGT_C2 PF14810.1 gi|344211243|ref|YP_004795563.1| - 4.9e-22 77.5 0.2 9.9e-22 76.5 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|344211243|ref|YP_004795563.1| - 1.7e-13 50.0 0.0 2.3e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 PUA domain DUF3244 PF11589.3 gi|344211244|ref|YP_004795564.1| - 0.0021 17.7 0.0 0.0028 17.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3244) Myco_19_kDa PF05481.7 gi|344211244|ref|YP_004795564.1| - 0.078 12.7 0.1 0.087 12.6 0.1 1.2 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen Mem_trans PF03547.13 gi|344211245|ref|YP_004795565.1| - 9.2e-28 96.6 23.3 3.1e-14 52.0 7.6 2.0 1 1 1 2 2 2 2 Membrane transport protein TMEM220 PF15071.1 gi|344211245|ref|YP_004795565.1| - 0.24 11.8 4.2 0.65 10.4 0.0 3.0 3 1 0 3 3 3 0 Transmembrane family 220, helix NAC PF01849.13 gi|344211246|ref|YP_004795566.1| - 3.2e-19 68.1 0.5 5.5e-19 67.4 0.3 1.4 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|344211246|ref|YP_004795566.1| - 7.1e-07 28.8 1.2 7.1e-07 28.8 0.9 2.6 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|344211246|ref|YP_004795566.1| - 6.6e-05 22.3 0.3 0.00013 21.4 0.2 1.5 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.11 gi|344211246|ref|YP_004795566.1| - 0.039 13.4 0.2 0.082 12.4 0.2 1.5 1 0 0 1 1 1 0 CUE domain Methyltransf_18 PF12847.2 gi|344211247|ref|YP_004795567.1| - 1.7e-13 51.1 0.0 2.5e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|344211247|ref|YP_004795567.1| - 6.5e-12 45.4 0.0 1.9e-08 34.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|344211247|ref|YP_004795567.1| - 1.8e-10 40.8 0.2 1.1e-09 38.3 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344211247|ref|YP_004795567.1| - 9e-09 35.0 0.0 1.2e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|344211247|ref|YP_004795567.1| - 8e-07 28.7 0.1 1.1e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|344211247|ref|YP_004795567.1| - 2e-06 27.3 0.1 3.6e-06 26.4 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|344211247|ref|YP_004795567.1| - 2.2e-06 27.0 0.2 2.7e-06 26.7 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.15 gi|344211247|ref|YP_004795567.1| - 2.6e-06 26.6 0.0 3.8e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|344211247|ref|YP_004795567.1| - 3.2e-05 23.7 0.0 4.6e-05 23.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|344211247|ref|YP_004795567.1| - 6.3e-05 22.1 0.0 7.9e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|344211247|ref|YP_004795567.1| - 6.7e-05 23.6 0.1 0.00011 22.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344211247|ref|YP_004795567.1| - 0.0019 18.6 0.1 0.0035 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|344211247|ref|YP_004795567.1| - 0.002 17.2 0.0 0.0026 16.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|344211247|ref|YP_004795567.1| - 0.0094 15.5 0.0 0.011 15.2 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|344211247|ref|YP_004795567.1| - 0.051 14.0 0.0 0.079 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|344211247|ref|YP_004795567.1| - 0.062 12.8 0.0 0.089 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 SMP PF04927.7 gi|344211249|ref|YP_004795569.1| - 0.11 12.4 1.5 0.29 11.1 1.0 1.7 1 1 0 1 1 1 0 Seed maturation protein TFIIS_C PF01096.13 gi|344211251|ref|YP_004795571.1| - 1.3e-17 63.1 9.5 2.4e-17 62.2 3.8 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) DUF2387 PF09526.5 gi|344211251|ref|YP_004795571.1| - 4e-07 29.8 8.0 0.00017 21.4 0.6 2.2 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|344211251|ref|YP_004795571.1| - 1.3e-06 28.1 2.5 9.8e-05 22.0 0.5 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|344211251|ref|YP_004795571.1| - 2.7e-05 23.4 3.8 0.00034 19.8 0.3 2.5 2 1 0 2 2 2 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|344211251|ref|YP_004795571.1| - 0.0003 20.4 3.3 0.11 12.2 0.4 2.7 2 1 0 2 2 2 2 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|344211251|ref|YP_004795571.1| - 0.0065 16.1 7.4 0.23 11.1 2.3 2.5 2 1 0 2 2 2 1 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|344211251|ref|YP_004795571.1| - 0.0078 16.0 3.9 0.9 9.4 0.1 3.2 3 0 0 3 3 3 1 Rubredoxin zf-ISL3 PF14690.1 gi|344211251|ref|YP_004795571.1| - 0.012 15.5 0.8 0.82 9.7 0.0 2.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|344211251|ref|YP_004795571.1| - 0.016 14.8 6.3 0.84 9.3 0.1 2.9 2 1 0 2 2 2 0 Nudix N-terminal DUF2752 PF10825.3 gi|344211251|ref|YP_004795571.1| - 0.018 15.0 0.4 0.048 13.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) DUF4428 PF14471.1 gi|344211251|ref|YP_004795571.1| - 0.034 13.8 1.1 0.14 11.9 0.0 2.3 3 0 0 3 3 2 0 Domain of unknown function (DUF4428) TerY-C PF15616.1 gi|344211251|ref|YP_004795571.1| - 0.039 13.8 5.1 0.16 11.9 3.5 1.8 1 1 0 1 1 1 0 TerY-C metal binding domain DZR PF12773.2 gi|344211251|ref|YP_004795571.1| - 0.048 13.4 7.3 7.4 6.4 5.1 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_4 PF14570.1 gi|344211251|ref|YP_004795571.1| - 0.051 13.1 4.9 7.5 6.2 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain Lar_restr_allev PF14354.1 gi|344211251|ref|YP_004795571.1| - 0.067 13.5 8.7 0.11 12.8 1.1 2.2 1 1 0 2 2 2 0 Restriction alleviation protein Lar FdhE PF04216.7 gi|344211251|ref|YP_004795571.1| - 0.11 12.1 3.6 0.043 13.5 0.5 1.7 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation RNA_POL_M_15KD PF02150.11 gi|344211251|ref|YP_004795571.1| - 0.12 12.0 0.2 0.12 12.0 0.1 3.1 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Terminase_GpA PF05876.7 gi|344211251|ref|YP_004795571.1| - 0.19 10.0 6.8 0.04 12.2 2.5 1.5 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) DUF3797 PF12677.2 gi|344211251|ref|YP_004795571.1| - 0.21 11.2 5.0 0.83 9.3 0.8 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) DNA_RNApol_7kD PF03604.8 gi|344211251|ref|YP_004795571.1| - 0.28 10.6 5.4 8.5 5.9 0.0 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-piccolo PF05715.8 gi|344211251|ref|YP_004795571.1| - 0.44 10.5 3.7 6.8 6.7 1.4 2.6 2 1 0 2 2 2 0 Piccolo Zn-finger zf-DNA_Pol PF08996.5 gi|344211251|ref|YP_004795571.1| - 0.49 9.7 4.1 0.19 11.0 0.9 1.5 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger DUF4379 PF14311.1 gi|344211251|ref|YP_004795571.1| - 0.51 10.1 9.0 2.8 7.8 0.4 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4379) zinc_ribbon_4 PF13717.1 gi|344211251|ref|YP_004795571.1| - 0.58 9.8 9.5 7 6.4 4.4 3.0 2 1 1 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344211251|ref|YP_004795571.1| - 0.82 9.6 9.9 4.4 7.3 0.5 3.3 2 1 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|344211251|ref|YP_004795571.1| - 0.89 9.1 9.8 6.3 6.4 4.3 3.0 2 1 1 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|344211251|ref|YP_004795571.1| - 0.93 9.2 0.0 0.93 9.2 0.0 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|344211251|ref|YP_004795571.1| - 0.99 8.9 6.7 5 6.7 0.2 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.14 gi|344211251|ref|YP_004795571.1| - 1.2 8.7 8.6 67 3.2 6.0 2.5 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|344211251|ref|YP_004795571.1| - 1.4 8.2 9.6 2.2 7.6 0.3 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF2082 PF09855.4 gi|344211251|ref|YP_004795571.1| - 2 8.3 7.2 1.4 8.7 0.9 2.7 2 2 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) A2L_zn_ribbon PF08792.5 gi|344211251|ref|YP_004795571.1| - 2.4 7.7 7.0 16 5.0 0.0 3.3 3 0 0 3 3 3 0 A2L zinc ribbon domain GFA PF04828.9 gi|344211251|ref|YP_004795571.1| - 2.4 8.1 7.4 5.6 6.9 0.1 2.8 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Elf1 PF05129.8 gi|344211251|ref|YP_004795571.1| - 2.5 7.8 6.1 11 5.8 1.6 2.7 1 1 0 2 2 2 0 Transcription elongation factor Elf1 like Mut7-C PF01927.11 gi|344211251|ref|YP_004795571.1| - 2.6 8.0 5.7 2.1 8.3 2.5 1.8 1 1 1 2 2 2 0 Mut7-C RNAse domain RRN7 PF11781.3 gi|344211251|ref|YP_004795571.1| - 2.7 7.5 8.3 29 4.2 0.2 3.3 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-RING_5 PF14634.1 gi|344211251|ref|YP_004795571.1| - 5.1 6.8 6.5 7.2 6.4 1.9 2.5 1 1 1 2 2 2 0 zinc-RING finger domain DUF3795 PF12675.2 gi|344211251|ref|YP_004795571.1| - 5.5 7.2 7.7 23 5.2 5.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3795) C1_4 PF07975.7 gi|344211251|ref|YP_004795571.1| - 7.9 6.5 7.3 21 5.2 2.1 2.8 1 1 2 3 3 3 0 TFIIH C1-like domain zinc_ribbon_2 PF13240.1 gi|344211251|ref|YP_004795571.1| - 9.7 5.8 12.7 0.94 9.0 0.6 3.1 3 0 0 3 3 3 0 zinc-ribbon domain MASE1 PF05231.9 gi|344211255|ref|YP_004795575.1| - 0.0091 15.0 0.0 0.0091 15.0 0.0 1.0 1 0 0 1 1 1 1 MASE1 Creatininase PF02633.9 gi|344211256|ref|YP_004795576.1| - 5.2e-67 225.3 0.1 5.9e-67 225.2 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Alpha-amylase PF00128.19 gi|344211257|ref|YP_004795577.1| - 1e-98 330.6 3.4 1.6e-98 330.0 2.3 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain hDGE_amylase PF14701.1 gi|344211257|ref|YP_004795577.1| - 0.0038 16.1 0.0 0.0059 15.5 0.0 1.2 1 0 0 1 1 1 1 glucanotransferase domain of human glycogen debranching enzyme Peptidase_M24 PF00557.19 gi|344211258|ref|YP_004795578.1| - 8.2e-18 64.7 0.9 1.3e-17 64.0 0.6 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|344211258|ref|YP_004795578.1| - 0.017 15.6 0.1 0.1 13.1 0.1 2.2 1 1 0 1 1 1 0 Creatinase/Prolidase N-terminal domain IU_nuc_hydro PF01156.14 gi|344211259|ref|YP_004795579.1| - 8e-77 258.5 0.1 8.9e-77 258.3 0.1 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase OCD_Mu_crystall PF02423.10 gi|344211260|ref|YP_004795580.1| - 9.4e-96 320.2 0.8 1.1e-95 320.0 0.6 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|344211260|ref|YP_004795580.1| - 0.018 15.1 0.1 0.044 13.8 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase S1 PF00575.18 gi|344211261|ref|YP_004795581.1| - 0.00029 20.8 0.0 0.18 11.9 0.0 2.1 2 0 0 2 2 2 2 S1 RNA binding domain TRAM PF01938.15 gi|344211261|ref|YP_004795581.1| - 0.0046 16.7 0.1 0.0053 16.5 0.1 1.1 1 0 0 1 1 1 1 TRAM domain Ten1_2 PF15490.1 gi|344211261|ref|YP_004795581.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Telomere-capping, CST complex subunit Na_H_antiporter PF03553.9 gi|344211262|ref|YP_004795582.1| - 1.6e-40 139.0 54.5 9.7e-31 106.9 14.0 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.13 gi|344211263|ref|YP_004795583.1| - 1.3e-26 92.8 0.0 3.4e-26 91.4 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_5 PF01022.15 gi|344211263|ref|YP_004795583.1| - 4.2e-08 32.7 0.2 7.8e-08 31.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|344211263|ref|YP_004795583.1| - 5.4e-08 32.3 0.8 2.8e-07 30.0 0.2 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344211263|ref|YP_004795583.1| - 4.8e-07 29.0 0.1 1.2e-06 27.7 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344211263|ref|YP_004795583.1| - 8.1e-06 25.4 0.8 0.00038 20.0 0.1 2.9 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|344211263|ref|YP_004795583.1| - 4.7e-05 23.0 0.2 0.00011 21.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|344211263|ref|YP_004795583.1| - 7.2e-05 22.4 0.1 0.00014 21.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|344211263|ref|YP_004795583.1| - 0.00038 20.0 0.1 0.0042 16.7 0.1 2.7 3 0 0 3 3 3 1 HTH domain HTH_AsnC-type PF13404.1 gi|344211263|ref|YP_004795583.1| - 0.00063 19.2 0.3 0.0083 15.6 0.1 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|344211263|ref|YP_004795583.1| - 0.0043 16.7 0.1 0.077 12.7 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|344211263|ref|YP_004795583.1| - 0.0066 16.4 0.1 0.011 15.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|344211263|ref|YP_004795583.1| - 0.024 14.1 0.1 0.074 12.6 0.1 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_DeoR PF08220.7 gi|344211263|ref|YP_004795583.1| - 0.034 13.6 0.1 0.089 12.3 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|344211263|ref|YP_004795583.1| - 0.053 13.8 0.4 0.13 12.6 0.1 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|344211263|ref|YP_004795583.1| - 0.068 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.14 gi|344211263|ref|YP_004795583.1| - 0.09 12.7 0.1 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|344211263|ref|YP_004795583.1| - 0.12 12.1 0.7 0.2 11.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix Cullin_Nedd8 PF10557.4 gi|344211263|ref|YP_004795583.1| - 0.12 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Cullin protein neddylation domain HTH_40 PF14493.1 gi|344211263|ref|YP_004795583.1| - 0.14 12.4 0.1 0.44 10.7 0.0 2.1 2 1 0 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|344211264|ref|YP_004795584.1| - 1.8e-19 69.0 0.1 3.6e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|344211264|ref|YP_004795584.1| - 0.013 15.2 0.0 0.033 13.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|344211264|ref|YP_004795584.1| - 0.014 15.4 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.7 gi|344211264|ref|YP_004795584.1| - 0.02 14.5 0.1 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 HTH domain Coat_F PF07875.7 gi|344211264|ref|YP_004795584.1| - 0.07 13.2 0.0 0.22 11.6 0.0 1.9 1 0 0 1 1 1 0 Coat F domain Sigma70_r4_2 PF08281.7 gi|344211264|ref|YP_004795584.1| - 0.076 12.4 0.1 0.81 9.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|344211264|ref|YP_004795584.1| - 0.098 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF1611 PF07755.6 gi|344211265|ref|YP_004795585.1| - 1.9e-92 309.1 0.3 2.2e-92 308.9 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) MR_MLE_C PF13378.1 gi|344211266|ref|YP_004795586.1| - 2.6e-17 62.7 0.6 2.6e-17 62.7 0.4 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|344211266|ref|YP_004795586.1| - 2e-14 53.6 0.3 8.7e-14 51.5 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|344211266|ref|YP_004795586.1| - 4.6e-13 49.5 1.6 1.4e-12 47.9 1.1 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Bactofilin PF04519.8 gi|344211267|ref|YP_004795587.1| - 6.7e-10 38.8 7.1 1.2e-08 34.8 0.5 3.1 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|344211267|ref|YP_004795587.1| - 2.6e-05 23.5 13.9 0.0022 17.4 0.1 6.0 4 2 3 7 7 7 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344211267|ref|YP_004795587.1| - 0.46 10.0 13.8 0.95 9.0 1.9 4.1 5 1 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF1396 PF07161.8 gi|344211268|ref|YP_004795588.1| - 0.0012 18.5 0.8 0.0012 18.5 0.6 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1396) DUF4440 PF14534.1 gi|344211268|ref|YP_004795588.1| - 0.26 11.5 3.0 0.4 10.9 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4440) Glyco_transf_20 PF00982.16 gi|344211269|ref|YP_004795589.1| - 1.3e-114 383.2 0.0 1.6e-114 383.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glycos_transf_1 PF00534.15 gi|344211269|ref|YP_004795589.1| - 0.0017 17.7 0.0 2.1 7.7 0.0 2.7 2 1 0 2 2 2 2 Glycosyl transferases group 1 MAF_flag10 PF01973.13 gi|344211270|ref|YP_004795590.1| - 5.5e-26 91.0 0.0 6.9e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Bac_luciferase PF00296.15 gi|344211271|ref|YP_004795591.1| - 2.6e-73 246.8 1.7 2.9e-73 246.6 1.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PALP PF00291.20 gi|344211271|ref|YP_004795591.1| - 0.026 13.7 0.0 0.041 13.1 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme HAD_2 PF13419.1 gi|344211272|ref|YP_004795592.1| - 4.1e-26 92.2 0.9 4.9e-26 92.0 0.6 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344211272|ref|YP_004795592.1| - 8.4e-06 26.3 0.2 1.9e-05 25.1 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344211272|ref|YP_004795592.1| - 0.012 15.3 0.1 0.036 13.7 0.0 1.9 2 0 0 2 2 2 0 HAD-hyrolase-like HAD PF12710.2 gi|344211272|ref|YP_004795592.1| - 0.018 15.2 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TrkA_N PF02254.13 gi|344211273|ref|YP_004795593.1| - 4e-26 91.3 0.2 7e-26 90.5 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|344211273|ref|YP_004795593.1| - 2.5e-08 33.4 2.0 1.1e-07 31.3 0.4 2.2 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|344211273|ref|YP_004795593.1| - 1.4e-07 31.6 0.0 2.3e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|344211273|ref|YP_004795593.1| - 9.5e-07 28.9 0.6 1.4e-06 28.4 0.4 1.3 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|344211273|ref|YP_004795593.1| - 3e-05 24.3 0.5 0.00071 19.9 0.0 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|344211273|ref|YP_004795593.1| - 0.00045 19.6 0.0 0.00076 18.9 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|344211273|ref|YP_004795593.1| - 0.00085 18.3 0.1 0.0012 17.8 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|344211273|ref|YP_004795593.1| - 0.0012 18.5 0.2 0.0039 16.8 0.0 1.7 1 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|344211273|ref|YP_004795593.1| - 0.0023 17.8 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.20 gi|344211273|ref|YP_004795593.1| - 0.0032 17.4 0.4 0.0047 16.8 0.3 1.4 1 0 0 1 1 1 1 short chain dehydrogenase ApbA PF02558.11 gi|344211273|ref|YP_004795593.1| - 0.0036 16.7 0.0 0.0047 16.3 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.9 gi|344211273|ref|YP_004795593.1| - 0.0077 14.9 0.1 0.033 12.8 0.0 1.8 1 1 1 2 2 2 1 Tryptophan halogenase XdhC_C PF13478.1 gi|344211273|ref|YP_004795593.1| - 0.0096 16.2 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|344211273|ref|YP_004795593.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|344211273|ref|YP_004795593.1| - 0.016 15.6 0.1 0.029 14.7 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|344211273|ref|YP_004795593.1| - 0.018 14.0 0.1 0.03 13.2 0.0 1.4 2 0 0 2 2 2 0 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|344211273|ref|YP_004795593.1| - 0.042 13.5 0.0 0.2 11.3 0.0 2.1 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.15 gi|344211273|ref|YP_004795593.1| - 0.044 13.8 0.0 0.11 12.6 0.0 1.6 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|344211273|ref|YP_004795593.1| - 0.048 13.5 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Epimerase PF01370.16 gi|344211273|ref|YP_004795593.1| - 0.052 12.9 0.0 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.10 gi|344211273|ref|YP_004795593.1| - 0.066 13.0 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.1 gi|344211273|ref|YP_004795593.1| - 0.079 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|344211273|ref|YP_004795593.1| - 0.11 11.5 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain ThiF PF00899.16 gi|344211273|ref|YP_004795593.1| - 0.11 12.2 0.1 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 ThiF family AA_permease_2 PF13520.1 gi|344211274|ref|YP_004795594.1| - 4.6e-49 167.1 41.5 5.6e-49 166.8 28.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|344211274|ref|YP_004795594.1| - 2.3e-44 151.5 38.6 2.9e-44 151.2 26.7 1.1 1 0 0 1 1 1 1 Amino acid permease TrkA_N PF02254.13 gi|344211275|ref|YP_004795595.1| - 5e-25 87.7 0.9 8.5e-25 87.0 0.6 1.4 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox PF00070.22 gi|344211275|ref|YP_004795595.1| - 4.7e-08 33.3 0.1 1e-07 32.2 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|344211275|ref|YP_004795595.1| - 7.5e-07 29.3 1.9 9.2e-07 29.0 1.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding TrkA_C PF02080.16 gi|344211275|ref|YP_004795595.1| - 1.2e-06 28.0 1.7 1.7e-06 27.4 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|344211275|ref|YP_004795595.1| - 3.9e-06 27.0 0.1 7e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|344211275|ref|YP_004795595.1| - 4e-05 22.6 0.5 5e-05 22.3 0.3 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344211275|ref|YP_004795595.1| - 0.00011 21.4 0.1 0.00024 20.2 0.1 1.5 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|344211275|ref|YP_004795595.1| - 0.00072 19.5 0.3 0.014 15.3 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|344211275|ref|YP_004795595.1| - 0.00084 18.7 0.2 0.0017 17.7 0.1 1.6 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|344211275|ref|YP_004795595.1| - 0.0011 18.0 0.6 0.006 15.7 0.1 2.0 1 1 0 2 2 2 1 Thi4 family NmrA PF05368.8 gi|344211275|ref|YP_004795595.1| - 0.0011 18.2 0.1 0.0016 17.7 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family 3HCDH_N PF02737.13 gi|344211275|ref|YP_004795595.1| - 0.0013 18.3 0.2 0.0025 17.4 0.1 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|344211275|ref|YP_004795595.1| - 0.0028 17.3 0.1 0.012 15.3 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|344211275|ref|YP_004795595.1| - 0.0048 16.6 1.2 1.6 8.4 0.1 2.5 1 1 0 2 2 2 2 Rossmann-like domain Glyco_trans_4_4 PF13579.1 gi|344211275|ref|YP_004795595.1| - 0.0093 16.1 0.8 0.45 10.6 0.6 2.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Pyr_redox_2 PF07992.9 gi|344211275|ref|YP_004795595.1| - 0.011 15.6 0.3 0.011 15.6 0.2 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|344211275|ref|YP_004795595.1| - 0.011 14.7 0.4 0.015 14.2 0.3 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase HI0933_like PF03486.9 gi|344211275|ref|YP_004795595.1| - 0.015 13.7 0.1 0.022 13.2 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|344211275|ref|YP_004795595.1| - 0.02 14.4 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|344211275|ref|YP_004795595.1| - 0.026 13.1 0.1 0.033 12.8 0.1 1.1 1 0 0 1 1 1 0 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|344211275|ref|YP_004795595.1| - 0.045 12.5 0.7 0.042 12.6 0.5 1.2 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.11 gi|344211275|ref|YP_004795595.1| - 0.049 13.0 0.1 0.083 12.3 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.1 gi|344211275|ref|YP_004795595.1| - 0.058 13.7 0.2 0.16 12.2 0.1 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain Pyr_redox_3 PF13738.1 gi|344211275|ref|YP_004795595.1| - 0.073 13.1 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.1 gi|344211275|ref|YP_004795595.1| - 0.096 12.4 0.0 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 RrnaAD PF00398.15 gi|344211275|ref|YP_004795595.1| - 0.1 11.5 0.0 0.2 10.6 0.0 1.4 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase Epimerase PF01370.16 gi|344211275|ref|YP_004795595.1| - 0.11 11.9 0.1 0.16 11.3 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pterin_bind PF00809.17 gi|344211276|ref|YP_004795596.1| - 7.9e-30 103.8 0.0 1.4e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 Pterin binding enzyme HATPase_c PF02518.21 gi|344211277|ref|YP_004795597.1| - 8.2e-15 54.4 0.2 2.4e-14 52.9 0.1 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344211277|ref|YP_004795597.1| - 1.1e-11 44.5 1.2 2.1e-11 43.6 0.1 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|344211277|ref|YP_004795597.1| - 2e-10 40.8 0.0 3.7e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|344211277|ref|YP_004795597.1| - 2.8e-07 31.1 0.1 6.2e-07 30.0 0.1 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|344211277|ref|YP_004795597.1| - 0.0013 18.8 0.0 0.0037 17.3 0.0 1.8 1 1 0 1 1 1 1 GAF domain MukE PF04288.8 gi|344211277|ref|YP_004795597.1| - 0.0025 16.6 0.1 0.0043 15.9 0.1 1.3 1 0 0 1 1 1 1 MukE-like family HATPase_c_2 PF13581.1 gi|344211277|ref|YP_004795597.1| - 0.066 13.0 0.3 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain APH PF01636.18 gi|344211278|ref|YP_004795598.1| - 3.3e-24 85.9 2.0 3.3e-24 85.9 1.4 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|344211278|ref|YP_004795598.1| - 1.1e-08 34.3 0.0 2.8e-08 33.0 0.0 1.7 1 1 0 1 1 1 1 Fructosamine kinase DUF1679 PF07914.6 gi|344211278|ref|YP_004795598.1| - 0.0055 15.3 0.0 0.0092 14.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.15 gi|344211278|ref|YP_004795598.1| - 0.038 13.1 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Ecdysteroid kinase PfkB PF00294.19 gi|344211279|ref|YP_004795599.1| - 4.3e-45 154.1 3.6 7.7e-45 153.3 2.5 1.3 1 1 0 1 1 1 1 pfkB family carbohydrate kinase CARDB PF07705.6 gi|344211280|ref|YP_004795600.1| - 1.1e-07 31.7 16.9 0.012 15.6 0.7 4.9 4 2 0 4 4 4 3 CARDB Transglut_C PF00927.17 gi|344211280|ref|YP_004795600.1| - 2.3e-06 27.5 0.3 0.0049 16.8 0.0 3.6 4 0 0 4 4 4 2 Transglutaminase family, C-terminal ig like domain ABC_tran PF00005.22 gi|344211281|ref|YP_004795601.1| - 2.4e-34 118.5 0.0 3.1e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211281|ref|YP_004795601.1| - 2.4e-12 47.4 0.1 2.2e-06 27.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|344211281|ref|YP_004795601.1| - 4.2e-06 26.9 0.4 3.5e-05 23.9 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344211281|ref|YP_004795601.1| - 6.2e-05 22.4 0.4 0.056 12.8 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344211281|ref|YP_004795601.1| - 0.0012 18.3 0.1 0.0026 17.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344211281|ref|YP_004795601.1| - 0.0016 18.4 0.3 0.003 17.5 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|344211281|ref|YP_004795601.1| - 0.0016 17.6 0.1 0.0025 17.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 TIR-like PF10137.4 gi|344211281|ref|YP_004795601.1| - 0.0041 16.7 0.0 0.06 12.9 0.0 2.1 2 0 0 2 2 2 1 Predicted nucleotide-binding protein containing TIR-like domain SMC_N PF02463.14 gi|344211281|ref|YP_004795601.1| - 0.0051 16.0 0.0 1.2 8.2 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|344211281|ref|YP_004795601.1| - 0.0062 16.8 0.4 0.031 14.5 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|344211281|ref|YP_004795601.1| - 0.01 14.8 0.0 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|344211281|ref|YP_004795601.1| - 0.014 14.8 0.2 0.13 11.6 0.1 2.0 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|344211281|ref|YP_004795601.1| - 0.015 16.0 0.7 0.025 15.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|344211281|ref|YP_004795601.1| - 0.021 14.7 0.8 0.069 13.0 0.5 1.9 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|344211281|ref|YP_004795601.1| - 0.026 13.4 0.1 0.037 12.9 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|344211281|ref|YP_004795601.1| - 0.032 14.5 0.2 0.058 13.7 0.2 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|344211281|ref|YP_004795601.1| - 0.045 13.1 0.3 0.087 12.2 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|344211281|ref|YP_004795601.1| - 0.055 13.2 0.2 0.19 11.5 0.0 2.0 2 0 0 2 2 1 0 Part of AAA domain AAA_28 PF13521.1 gi|344211281|ref|YP_004795601.1| - 0.083 12.8 0.2 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344211281|ref|YP_004795601.1| - 0.094 12.4 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|344211281|ref|YP_004795601.1| - 0.11 12.4 0.0 1.2 9.1 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|344211281|ref|YP_004795601.1| - 0.12 11.9 0.2 0.38 10.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|344211281|ref|YP_004795601.1| - 0.14 11.8 0.0 0.37 10.4 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase MMR_HSR1 PF01926.18 gi|344211281|ref|YP_004795601.1| - 0.39 10.6 2.0 1.6 8.6 1.4 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase MacB_PCD PF12704.2 gi|344211282|ref|YP_004795602.1| - 4.6e-27 95.1 0.7 4.6e-27 95.1 0.5 2.6 2 1 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|344211282|ref|YP_004795602.1| - 1.3e-23 83.0 6.8 2.2e-21 75.8 3.1 2.1 2 0 0 2 2 2 2 FtsX-like permease family PetG PF02529.10 gi|344211282|ref|YP_004795602.1| - 0.26 10.8 2.1 0.84 9.2 1.5 1.9 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 BCLP PF12304.3 gi|344211282|ref|YP_004795602.1| - 0.51 9.7 4.5 0.61 9.4 0.0 2.5 2 1 0 2 2 2 0 Beta-casein like protein Meth_synt_2 PF01717.13 gi|344211284|ref|YP_004795604.1| - 2.5e-80 269.8 0.0 3e-80 269.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|344211284|ref|YP_004795604.1| - 4.3e-21 75.4 0.1 2e-20 73.3 0.1 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|344211284|ref|YP_004795604.1| - 2.2e-06 26.8 0.0 3e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Meth_synt_1 PF08267.7 gi|344211285|ref|YP_004795605.1| - 1.7e-27 96.5 0.0 2.4e-23 82.8 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|344211285|ref|YP_004795605.1| - 3.7e-17 62.2 0.1 4.3e-17 62.0 0.1 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain NAD_binding_5 PF07994.7 gi|344211285|ref|YP_004795605.1| - 0.091 12.2 0.8 0.49 9.8 0.1 2.0 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase Methyltransf_26 PF13659.1 gi|344211286|ref|YP_004795606.1| - 3.7e-19 68.8 0.2 6.7e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344211286|ref|YP_004795606.1| - 1.2e-11 44.2 0.0 1.7e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|344211286|ref|YP_004795606.1| - 1e-09 38.1 0.0 1.4e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211286|ref|YP_004795606.1| - 7.7e-09 36.1 0.0 1.2e-08 35.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344211286|ref|YP_004795606.1| - 1.1e-07 32.2 0.0 2.3e-06 28.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344211286|ref|YP_004795606.1| - 5.9e-07 29.3 0.0 1.8e-06 27.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|344211286|ref|YP_004795606.1| - 3e-06 26.7 0.0 4.5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|344211286|ref|YP_004795606.1| - 4.4e-06 26.0 0.5 6.6e-06 25.4 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|344211286|ref|YP_004795606.1| - 0.00012 21.6 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|344211286|ref|YP_004795606.1| - 0.00028 21.2 0.0 0.00043 20.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211286|ref|YP_004795606.1| - 0.00061 20.2 0.0 0.0018 18.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|344211286|ref|YP_004795606.1| - 0.0012 18.4 0.0 0.0048 16.4 0.0 1.8 2 0 0 2 2 2 1 DNA methylase CMAS PF02353.15 gi|344211286|ref|YP_004795606.1| - 0.0034 16.4 0.0 0.0071 15.4 0.0 1.4 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|344211286|ref|YP_004795606.1| - 0.0058 16.0 0.1 0.019 14.4 0.0 1.8 2 1 1 3 3 3 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.1 gi|344211286|ref|YP_004795606.1| - 0.0073 15.9 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TrkA_N PF02254.13 gi|344211286|ref|YP_004795606.1| - 0.02 14.9 0.0 0.053 13.5 0.0 1.7 2 0 0 2 2 2 0 TrkA-N domain FtsJ PF01728.14 gi|344211286|ref|YP_004795606.1| - 0.07 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_2 PF00891.13 gi|344211286|ref|YP_004795606.1| - 0.087 12.0 0.1 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_9 PF08003.6 gi|344211286|ref|YP_004795606.1| - 0.12 11.0 0.0 0.21 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|344211287|ref|YP_004795607.1| - 1.6e-46 158.4 0.0 1.9e-46 158.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|344211287|ref|YP_004795607.1| - 3e-08 33.7 0.4 5.3e-08 32.9 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211287|ref|YP_004795607.1| - 4.4e-06 27.2 0.0 9.9e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211287|ref|YP_004795607.1| - 0.0028 18.1 0.0 0.0073 16.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344211287|ref|YP_004795607.1| - 0.011 16.2 0.0 0.023 15.1 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344211287|ref|YP_004795607.1| - 0.043 14.1 0.0 0.089 13.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|344211287|ref|YP_004795607.1| - 0.057 12.8 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) TrkA_N PF02254.13 gi|344211287|ref|YP_004795607.1| - 0.07 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain Methyltransf_23 PF13489.1 gi|344211287|ref|YP_004795607.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|344211287|ref|YP_004795607.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DUF655 PF04919.7 gi|344211288|ref|YP_004795608.1| - 8.8e-59 198.2 0.2 1.1e-58 197.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|344211288|ref|YP_004795608.1| - 0.00011 22.1 0.1 0.00055 19.8 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|344211288|ref|YP_004795608.1| - 0.00052 20.0 0.0 0.0022 18.0 0.0 1.9 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|344211288|ref|YP_004795608.1| - 0.13 12.4 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.11 gi|344211289|ref|YP_004795609.1| - 2.3e-15 56.6 2.6 2.7e-15 56.4 1.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF4004 PF13171.1 gi|344211289|ref|YP_004795609.1| - 0.063 13.4 0.4 0.098 12.8 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4004) UBN2_3 PF14244.1 gi|344211289|ref|YP_004795609.1| - 0.14 11.6 0.1 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type DUF3571 PF12095.3 gi|344211289|ref|YP_004795609.1| - 1.1 9.4 4.7 4.7 7.5 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3571) Ribosomal_L21e PF01157.13 gi|344211290|ref|YP_004795610.1| - 1.6e-35 120.8 0.0 1.8e-35 120.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e EF1_GNE PF00736.14 gi|344211291|ref|YP_004795611.1| - 1.1e-20 73.0 0.1 1.2e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|344211292|ref|YP_004795612.1| - 1.8e-11 43.8 14.8 1.3e-05 25.1 3.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) C1_3 PF07649.7 gi|344211292|ref|YP_004795612.1| - 7.5e-05 22.6 9.6 0.00073 19.5 1.8 2.3 2 0 0 2 2 2 1 C1-like domain Zn_Tnp_IS91 PF14319.1 gi|344211292|ref|YP_004795612.1| - 0.003 17.0 9.7 0.0035 16.8 6.7 1.1 1 0 0 1 1 1 1 Transposase zinc-binding domain DZR PF12773.2 gi|344211292|ref|YP_004795612.1| - 0.0031 17.2 13.9 0.95 9.3 10.0 2.3 1 1 0 1 1 1 1 Double zinc ribbon zf-Mss51 PF13824.1 gi|344211292|ref|YP_004795612.1| - 0.004 16.9 12.6 0.73 9.7 1.6 2.9 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 PolC_DP2 PF03833.8 gi|344211292|ref|YP_004795612.1| - 0.015 12.9 7.4 0.016 12.9 5.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OrfB_Zn_ribbon PF07282.6 gi|344211292|ref|YP_004795612.1| - 0.016 14.8 11.1 0.019 14.6 4.0 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|344211292|ref|YP_004795612.1| - 0.019 14.6 11.3 11 5.8 7.8 2.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-HIT PF04438.11 gi|344211292|ref|YP_004795612.1| - 0.035 13.7 16.3 0.29 10.8 3.6 2.9 1 1 1 2 2 2 0 HIT zinc finger zf-UBP PF02148.14 gi|344211292|ref|YP_004795612.1| - 0.12 12.5 1.2 0.12 12.5 0.9 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein NMDAR2_C PF10565.4 gi|344211292|ref|YP_004795612.1| - 0.13 10.9 7.0 0.14 10.8 4.9 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus NMD3 PF04981.8 gi|344211292|ref|YP_004795612.1| - 0.14 11.2 8.6 0.16 11.0 6.0 1.0 1 0 0 1 1 1 0 NMD3 family Sgf11 PF08209.6 gi|344211292|ref|YP_004795612.1| - 0.15 11.3 0.8 0.15 11.3 0.6 3.7 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.8 gi|344211292|ref|YP_004795612.1| - 0.15 11.5 13.8 1.8 8.0 1.9 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.21 gi|344211292|ref|YP_004795612.1| - 0.16 12.3 16.7 1.9 8.9 0.5 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type Desulfoferrod_N PF06397.7 gi|344211292|ref|YP_004795612.1| - 0.16 11.3 16.0 4.2 6.8 0.5 4.0 1 1 3 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|344211292|ref|YP_004795612.1| - 0.17 11.1 15.4 0.29 10.3 2.7 3.4 1 1 2 3 3 3 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344211292|ref|YP_004795612.1| - 0.2 11.2 14.4 0.21 11.1 0.6 3.6 3 1 0 3 3 3 0 zinc-ribbon domain zf-UBR PF02207.15 gi|344211292|ref|YP_004795612.1| - 0.22 11.2 12.6 6.6 6.5 8.8 2.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) UPF0547 PF10571.4 gi|344211292|ref|YP_004795612.1| - 0.28 10.9 14.2 0.49 10.1 5.7 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2387 PF09526.5 gi|344211292|ref|YP_004795612.1| - 0.33 10.8 0.3 0.33 10.8 0.2 2.5 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Prok-RING_1 PF14446.1 gi|344211292|ref|YP_004795612.1| - 0.38 10.5 12.1 0.32 10.7 1.2 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF2296 PF10058.4 gi|344211292|ref|YP_004795612.1| - 0.39 10.4 12.0 3.8 7.3 0.1 3.8 2 1 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_5 PF14634.1 gi|344211292|ref|YP_004795612.1| - 0.41 10.4 10.9 1.6 8.5 0.8 2.4 2 1 0 2 2 2 0 zinc-RING finger domain zf-MYND PF01753.13 gi|344211292|ref|YP_004795612.1| - 0.49 10.3 10.6 28 4.6 7.6 2.4 1 1 0 1 1 1 0 MYND finger zinc-ribbons_6 PF07191.7 gi|344211292|ref|YP_004795612.1| - 0.49 10.2 12.4 4.3 7.1 5.0 2.2 1 1 1 2 2 2 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|344211292|ref|YP_004795612.1| - 0.53 10.0 6.2 1.3 8.7 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain FYVE_2 PF02318.11 gi|344211292|ref|YP_004795612.1| - 0.61 10.0 8.1 0.67 9.8 5.6 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Ribosomal_L34e PF01199.13 gi|344211292|ref|YP_004795612.1| - 0.65 10.2 5.9 3.9 7.7 0.1 2.5 1 1 2 3 3 3 0 Ribosomal protein L34e Zn_Tnp_IS1595 PF12760.2 gi|344211292|ref|YP_004795612.1| - 0.72 9.7 20.3 1.3e+02 2.4 14.1 3.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain IBR PF01485.16 gi|344211292|ref|YP_004795612.1| - 0.72 9.7 12.5 11 6.0 9.2 2.1 1 1 0 1 1 1 0 IBR domain zf-B_box PF00643.19 gi|344211292|ref|YP_004795612.1| - 0.86 9.5 11.4 21 5.1 7.9 2.4 1 1 0 1 1 1 0 B-box zinc finger RNHCP PF12647.2 gi|344211292|ref|YP_004795612.1| - 1 9.2 10.5 1.7 8.5 3.8 2.2 1 1 1 2 2 2 0 RNHCP domain zf-C2HC5 PF06221.8 gi|344211292|ref|YP_004795612.1| - 1 9.1 11.8 2.7 7.8 4.7 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Ribosomal_L37ae PF01780.14 gi|344211292|ref|YP_004795612.1| - 1.2 9.0 9.5 0.82 9.5 2.5 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family HypA PF01155.14 gi|344211292|ref|YP_004795612.1| - 1.2 8.8 11.0 39 3.9 7.6 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2039 PF10217.4 gi|344211292|ref|YP_004795612.1| - 1.6 8.7 13.2 0.097 12.6 5.9 1.4 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2039) zf-C2H2_6 PF13912.1 gi|344211292|ref|YP_004795612.1| - 1.7 8.6 14.1 6.8 6.7 0.5 3.7 4 0 0 4 4 4 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.14 gi|344211292|ref|YP_004795612.1| - 2.2 7.8 11.6 4.5 6.8 1.7 3.3 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|344211292|ref|YP_004795612.1| - 2.9 7.9 19.0 18 5.3 3.3 3.8 1 1 2 3 3 3 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|344211292|ref|YP_004795612.1| - 2.9 8.3 16.3 5.7 7.4 1.0 3.7 2 1 2 4 4 4 0 Zinc-finger double domain zf-tcix PF14952.1 gi|344211292|ref|YP_004795612.1| - 2.9 7.2 20.4 4 6.8 0.4 3.5 1 1 2 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DUF1272 PF06906.6 gi|344211292|ref|YP_004795612.1| - 3.2 7.6 11.3 29 4.6 7.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) A2L_zn_ribbon PF08792.5 gi|344211292|ref|YP_004795612.1| - 3.2 7.3 13.9 12 5.4 2.6 3.5 1 1 1 2 2 2 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|344211292|ref|YP_004795612.1| - 3.3 7.5 11.9 1.3 8.8 0.1 3.4 2 1 2 4 4 4 0 PhnA Zinc-Ribbon YhfH PF14149.1 gi|344211292|ref|YP_004795612.1| - 4 7.3 17.2 5.6 6.8 0.2 3.4 1 1 2 3 3 3 0 YhfH-like protein C1_2 PF03107.11 gi|344211292|ref|YP_004795612.1| - 5.4 7.2 9.6 56 3.9 3.6 2.9 1 1 2 3 3 3 0 C1 domain TFIIS_C PF01096.13 gi|344211292|ref|YP_004795612.1| - 6.6 6.4 17.8 11 5.7 0.3 4.1 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) C1_4 PF07975.7 gi|344211292|ref|YP_004795612.1| - 6.8 6.7 12.8 2.1e+02 2.0 8.8 2.8 1 1 0 1 1 1 0 TFIIH C1-like domain zf-AN1 PF01428.11 gi|344211292|ref|YP_004795612.1| - 8.4 6.3 14.3 7.3 6.5 2.4 2.8 2 1 0 2 2 2 0 AN1-like Zinc finger CpXC PF14353.1 gi|344211292|ref|YP_004795612.1| - 8.6 6.3 10.7 4.1 7.3 1.0 2.8 1 1 1 2 2 2 0 CpXC protein DUF2391 PF09622.5 gi|344211293|ref|YP_004795613.1| - 0.0006 19.0 3.0 0.00081 18.6 2.1 1.2 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) 3HCDH_N PF02737.13 gi|344211294|ref|YP_004795614.1| - 4.5e-15 55.7 0.2 6.8e-15 55.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|344211294|ref|YP_004795614.1| - 1.1e-14 54.6 0.0 1.7e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Alk_phosphatase PF00245.15 gi|344211294|ref|YP_004795614.1| - 0.027 13.1 0.4 0.035 12.7 0.3 1.1 1 0 0 1 1 1 0 Alkaline phosphatase AP_endonuc_2 PF01261.19 gi|344211295|ref|YP_004795615.1| - 7.6e-33 113.5 5.2 7.6e-33 113.5 3.0 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|344211295|ref|YP_004795615.1| - 4.9e-18 64.4 0.0 1e-17 63.3 0.0 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|344211295|ref|YP_004795615.1| - 0.045 13.6 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) AIM24 PF01987.12 gi|344211296|ref|YP_004795616.1| - 1.6e-63 214.0 0.0 1.8e-63 213.8 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 CBS PF00571.23 gi|344211297|ref|YP_004795617.1| - 6.6e-22 77.0 2.7 4.4e-12 45.5 0.1 2.9 2 1 0 2 2 2 2 CBS domain IF-2 PF11987.3 gi|344211297|ref|YP_004795617.1| - 0.16 11.8 1.7 3.8 7.4 0.3 2.7 1 1 2 3 3 3 0 Translation-initiation factor 2 GFO_IDH_MocA PF01408.17 gi|344211298|ref|YP_004795618.1| - 6.9e-15 55.6 0.0 1.2e-14 54.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|344211298|ref|YP_004795618.1| - 4.7e-13 48.9 0.3 1.1e-12 47.7 0.2 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|344211298|ref|YP_004795618.1| - 0.022 14.1 0.0 0.047 13.1 0.0 1.5 1 1 0 1 1 1 0 Putative oxidoreductase C terminal MMR_HSR1_C PF08438.5 gi|344211299|ref|YP_004795619.1| - 9.6e-32 109.4 0.0 1.5e-31 108.8 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|344211299|ref|YP_004795619.1| - 1.8e-17 63.3 0.0 9.8e-17 60.9 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|344211299|ref|YP_004795619.1| - 3.2e-11 42.9 0.0 6.5e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|344211299|ref|YP_004795619.1| - 1.2e-09 37.6 0.0 8.7e-08 31.5 0.0 3.0 3 0 0 3 3 3 1 Ferrous iron transport protein B Histidinol_dh PF00815.15 gi|344211301|ref|YP_004795621.1| - 5.2e-146 486.4 5.4 6.4e-146 486.1 3.7 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Toprim_2 PF13155.1 gi|344211301|ref|YP_004795621.1| - 0.44 10.9 3.0 1.2 9.5 0.1 2.6 2 1 1 3 3 3 0 Toprim-like Fe-S_biosyn PF01521.15 gi|344211302|ref|YP_004795622.1| - 3.9e-17 62.2 0.0 4.7e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.7 gi|344211303|ref|YP_004795623.1| - 2.1e-23 82.1 0.8 2.3e-23 82.0 0.6 1.0 1 0 0 1 1 1 1 Dodecin DUF2238 PF09997.4 gi|344211304|ref|YP_004795624.1| - 5.6e-05 22.5 1.2 9.9e-05 21.7 0.8 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF3861 PF12977.2 gi|344211305|ref|YP_004795625.1| - 0.11 12.6 0.0 7.2 6.8 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3861) Competence PF03772.11 gi|344211305|ref|YP_004795625.1| - 0.18 10.8 16.9 0.23 10.4 11.7 1.3 1 0 0 1 1 1 0 Competence protein ATPase_gene1 PF09527.5 gi|344211305|ref|YP_004795625.1| - 3.3 7.5 10.3 3 7.7 0.1 3.0 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF457 PF04307.9 gi|344211306|ref|YP_004795626.1| - 3.2e-15 55.8 27.2 7.7e-15 54.5 14.4 2.9 2 1 0 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MS_channel PF00924.13 gi|344211307|ref|YP_004795627.1| - 9.3e-13 47.9 2.8 9.3e-13 47.9 1.9 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel SUR7 PF06687.7 gi|344211307|ref|YP_004795627.1| - 0.033 13.7 1.8 0.05 13.1 1.2 1.3 1 0 0 1 1 1 0 SUR7/PalI family DUF3392 PF11872.3 gi|344211307|ref|YP_004795627.1| - 0.077 12.9 4.2 0.13 12.1 2.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3392) ABC2_membrane_2 PF12679.2 gi|344211307|ref|YP_004795627.1| - 0.17 10.6 4.9 0.24 10.2 3.4 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|344211307|ref|YP_004795627.1| - 4.2 6.4 11.8 5.3 6.1 8.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DNA_RNApol_7kD PF03604.8 gi|344211309|ref|YP_004795629.1| - 0.013 14.8 1.1 0.02 14.3 0.8 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.1 gi|344211309|ref|YP_004795629.1| - 0.2 11.1 1.6 0.24 10.9 1.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zinc_ribbon_6 PF14599.1 gi|344211309|ref|YP_004795629.1| - 0.51 10.1 7.4 0.34 10.7 0.4 2.5 1 1 1 2 2 2 0 Zinc-ribbon zf-RanBP PF00641.13 gi|344211309|ref|YP_004795629.1| - 6.9 5.8 7.6 55 2.9 5.3 2.2 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others 5_nucleotid_C PF02872.13 gi|344211310|ref|YP_004795630.1| - 4.4e-29 101.4 0.0 7e-29 100.8 0.0 1.3 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|344211310|ref|YP_004795630.1| - 2.9e-08 33.3 0.0 9.1e-08 31.7 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|344211310|ref|YP_004795630.1| - 1.1e-05 25.3 0.0 2.1e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PGA_cap PF09587.5 gi|344211310|ref|YP_004795630.1| - 0.0006 19.2 0.1 0.0016 17.8 0.0 1.7 2 0 0 2 2 2 1 Bacterial capsule synthesis protein PGA_cap AroM PF07302.6 gi|344211310|ref|YP_004795630.1| - 0.15 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 AroM protein Usp PF00582.21 gi|344211311|ref|YP_004795631.1| - 3.5e-10 40.2 1.6 1e-09 38.6 1.1 1.7 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|344211311|ref|YP_004795631.1| - 0.044 13.5 0.3 0.12 12.1 0.2 1.6 1 1 0 1 1 1 0 Electron transfer flavoprotein domain HGD-D PF06050.8 gi|344211311|ref|YP_004795631.1| - 0.088 11.6 0.0 3.1 6.5 0.0 2.0 1 1 1 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component DnaI_N PF07319.6 gi|344211311|ref|YP_004795631.1| - 0.099 12.9 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Primosomal protein DnaI N-terminus MS_channel PF00924.13 gi|344211312|ref|YP_004795632.1| - 1.5e-35 122.3 0.1 2.2e-35 121.8 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel PHO4 PF01384.15 gi|344211312|ref|YP_004795632.1| - 0.019 13.6 0.5 0.026 13.1 0.3 1.2 1 0 0 1 1 1 0 Phosphate transporter family Chromate_transp PF02417.10 gi|344211312|ref|YP_004795632.1| - 0.22 11.1 5.2 0.34 10.5 3.6 1.3 1 0 0 1 1 1 0 Chromate transporter PAC2 PF09754.4 gi|344211313|ref|YP_004795633.1| - 5.9e-27 94.9 0.0 7.2e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family zf-ribbon_3 PF13248.1 gi|344211314|ref|YP_004795634.1| - 2.9e-05 23.1 0.2 0.0035 16.5 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|344211314|ref|YP_004795634.1| - 3.1e-05 23.5 2.1 0.047 13.4 0.0 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|344211314|ref|YP_004795634.1| - 0.00021 20.7 1.4 0.034 13.6 0.1 2.3 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|344211314|ref|YP_004795634.1| - 0.00054 19.2 1.0 0.0014 17.8 0.7 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|344211314|ref|YP_004795634.1| - 0.00065 19.4 0.8 0.001 18.8 0.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344211314|ref|YP_004795634.1| - 0.00093 18.6 1.9 0.0061 15.9 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Terminase_GpA PF05876.7 gi|344211314|ref|YP_004795634.1| - 0.0034 15.7 0.4 0.0034 15.7 0.3 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) OrfB_Zn_ribbon PF07282.6 gi|344211314|ref|YP_004795634.1| - 0.0046 16.5 0.9 0.0072 15.9 0.7 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|344211314|ref|YP_004795634.1| - 0.0046 16.4 0.6 2.2 7.9 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|344211314|ref|YP_004795634.1| - 0.0053 16.5 0.6 0.11 12.3 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DUF1272 PF06906.6 gi|344211314|ref|YP_004795634.1| - 0.0067 16.2 0.4 1.3 8.9 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) Lar_restr_allev PF14354.1 gi|344211314|ref|YP_004795634.1| - 0.0072 16.6 0.6 0.0092 16.2 0.4 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_4 PF13717.1 gi|344211314|ref|YP_004795634.1| - 0.0086 15.7 0.7 3.6 7.3 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|344211314|ref|YP_004795634.1| - 0.015 14.6 0.1 0.016 14.5 0.1 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger NOB1_Zn_bind PF08772.6 gi|344211314|ref|YP_004795634.1| - 0.021 14.6 2.0 0.05 13.4 0.2 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|344211314|ref|YP_004795634.1| - 0.024 14.5 1.9 2.2 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|344211314|ref|YP_004795634.1| - 0.025 14.2 4.5 0.085 12.5 3.1 1.8 1 1 0 1 1 1 0 Nudix N-terminal Elf1 PF05129.8 gi|344211314|ref|YP_004795634.1| - 0.025 14.2 0.1 0.027 14.1 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.3 gi|344211314|ref|YP_004795634.1| - 0.04 13.8 1.6 6.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RMP PF14996.1 gi|344211314|ref|YP_004795634.1| - 0.058 13.3 0.2 0.061 13.2 0.2 1.0 1 0 0 1 1 1 0 Retinal Maintenance zf-ISL3 PF14690.1 gi|344211314|ref|YP_004795634.1| - 0.06 13.3 0.5 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_6 PF14599.1 gi|344211314|ref|YP_004795634.1| - 0.06 13.1 0.3 0.67 9.7 0.2 2.0 1 1 0 1 1 1 0 Zinc-ribbon DUF2296 PF10058.4 gi|344211314|ref|YP_004795634.1| - 0.067 12.9 0.4 0.13 12.0 0.3 1.5 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) DNA_ligase_ZBD PF03119.11 gi|344211314|ref|YP_004795634.1| - 0.068 12.8 3.6 4.4 7.0 0.5 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|344211314|ref|YP_004795634.1| - 0.069 12.9 1.8 0.23 11.2 1.2 1.8 1 1 1 2 2 2 0 zinc-ribbons Cys_rich_CPXG PF14255.1 gi|344211314|ref|YP_004795634.1| - 0.071 12.9 1.7 0.16 11.7 1.2 1.7 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-RING_3 PF14369.1 gi|344211314|ref|YP_004795634.1| - 0.074 13.0 2.9 3.1 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-finger GFA PF04828.9 gi|344211314|ref|YP_004795634.1| - 0.086 12.8 1.2 0.6 10.0 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|344211314|ref|YP_004795634.1| - 0.096 12.6 0.8 3.8 7.5 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.13 gi|344211314|ref|YP_004795634.1| - 0.099 12.2 2.3 1 9.0 0.0 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Mu-like_Com PF10122.4 gi|344211314|ref|YP_004795634.1| - 0.11 11.6 1.2 0.61 9.1 0.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-B_box PF00643.19 gi|344211314|ref|YP_004795634.1| - 0.11 12.4 0.6 12 5.9 0.0 2.1 2 0 0 2 2 2 0 B-box zinc finger zf-LITAF-like PF10601.4 gi|344211314|ref|YP_004795634.1| - 0.12 12.2 2.0 4.7 7.1 0.1 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|344211314|ref|YP_004795634.1| - 0.15 11.5 0.8 3.4 7.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|344211314|ref|YP_004795634.1| - 0.18 11.2 0.5 4 7.0 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|344211314|ref|YP_004795634.1| - 0.23 11.1 1.1 0.55 9.9 0.8 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CpXC PF14353.1 gi|344211314|ref|YP_004795634.1| - 0.26 11.2 1.3 2.5 8.1 0.0 2.1 1 1 0 2 2 2 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|344211314|ref|YP_004795634.1| - 0.38 10.6 3.9 4.2 7.2 2.7 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|344211314|ref|YP_004795634.1| - 0.94 9.4 4.0 13 5.7 0.1 2.5 2 1 0 2 2 2 0 Rubredoxin DUF329 PF03884.9 gi|344211314|ref|YP_004795634.1| - 0.96 9.0 4.6 11 5.6 0.2 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF329) DUF1610 PF07754.6 gi|344211314|ref|YP_004795634.1| - 5.3 7.2 5.8 3.8 7.7 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF3367 PF11847.3 gi|344211315|ref|YP_004795635.1| - 0.0091 13.9 0.4 0.0093 13.9 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3367) SieB PF14163.1 gi|344211315|ref|YP_004795635.1| - 0.029 13.9 0.3 0.035 13.6 0.2 1.2 1 0 0 1 1 1 0 Superinfection exclusion protein B PEMT PF04191.8 gi|344211315|ref|YP_004795635.1| - 0.1 12.7 2.1 0.13 12.3 1.5 1.1 1 0 0 1 1 1 0 Phospholipid methyltransferase YlaC PF10777.4 gi|344211315|ref|YP_004795635.1| - 0.11 12.0 0.1 0.12 11.8 0.1 1.0 1 0 0 1 1 1 0 Inner membrane protein YlaC IF-2B PF01008.12 gi|344211316|ref|YP_004795636.1| - 6.3e-49 166.4 0.3 7.9e-49 166.1 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Sec16_N PF12935.2 gi|344211316|ref|YP_004795636.1| - 0.017 15.0 5.3 0.024 14.5 3.7 1.2 1 0 0 1 1 1 0 Vesicle coat trafficking protein Sec16 N-terminus SAS4 PF15460.1 gi|344211316|ref|YP_004795636.1| - 0.037 13.8 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 Something about silencing, SAS, complex subunit 4 HEAT_2 PF13646.1 gi|344211316|ref|YP_004795636.1| - 0.11 12.8 2.0 1.3 9.3 0.2 2.4 2 0 0 2 2 2 0 HEAT repeats DUF1628 PF07790.6 gi|344211317|ref|YP_004795637.1| - 1.3e-05 25.8 0.1 6.6e-05 23.5 0.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DoxX PF07681.7 gi|344211318|ref|YP_004795638.1| - 1e-07 32.2 6.9 1e-07 32.2 4.8 4.5 3 2 1 4 4 4 1 DoxX CoatB PF10389.4 gi|344211318|ref|YP_004795638.1| - 0.1 12.4 0.3 0.1 12.4 0.2 2.2 2 0 0 2 2 2 0 Bacteriophage coat protein B DoxD PF04173.8 gi|344211318|ref|YP_004795638.1| - 1.2 8.7 14.6 0.17 11.5 0.3 3.7 4 1 1 5 5 5 0 TQO small subunit DoxD Acetyltransf_7 PF13508.1 gi|344211319|ref|YP_004795639.1| - 1.2e-13 50.9 0.3 2e-13 50.2 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344211319|ref|YP_004795639.1| - 6.7e-13 48.4 0.3 1.3e-12 47.5 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|344211319|ref|YP_004795639.1| - 3.1e-10 39.6 0.1 8.3e-10 38.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|344211319|ref|YP_004795639.1| - 8.1e-09 35.6 0.2 1.1e-08 35.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344211319|ref|YP_004795639.1| - 2.8e-05 24.0 0.5 3.9e-05 23.5 0.4 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|344211319|ref|YP_004795639.1| - 6.1e-05 23.0 0.7 0.00011 22.1 0.5 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211319|ref|YP_004795639.1| - 0.00018 21.5 0.1 0.00035 20.5 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344211319|ref|YP_004795639.1| - 0.00028 20.7 0.2 0.00084 19.1 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344211319|ref|YP_004795639.1| - 0.019 14.8 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|344211319|ref|YP_004795639.1| - 0.023 14.8 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|344211319|ref|YP_004795639.1| - 0.068 12.7 0.3 0.089 12.3 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.1 gi|344211319|ref|YP_004795639.1| - 0.91 9.8 5.0 1.4 9.3 2.1 2.2 3 0 0 3 3 3 0 N-terminal segments of P. falciparum erythrocyte membrane protein DNA_primase_S PF01896.14 gi|344211320|ref|YP_004795640.1| - 8.5e-24 84.0 0.0 1.5e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit DUF1525 PF07511.6 gi|344211321|ref|YP_004795641.1| - 0.038 13.9 0.3 0.069 13.1 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) Metal_resist PF13801.1 gi|344211321|ref|YP_004795641.1| - 0.044 13.7 6.3 0.095 12.6 3.9 2.0 1 1 0 1 1 1 0 Heavy-metal resistance DUF605 PF04652.11 gi|344211321|ref|YP_004795641.1| - 0.09 12.1 13.7 0.1 11.9 9.5 1.2 1 0 0 1 1 1 0 Vta1 like DUF572 PF04502.8 gi|344211321|ref|YP_004795641.1| - 0.13 11.4 1.3 0.16 11.1 0.9 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) Yip1 PF04893.12 gi|344211322|ref|YP_004795642.1| - 0.068 12.6 12.2 0.089 12.2 8.4 1.1 1 0 0 1 1 1 0 Yip1 domain Cation_efflux PF01545.16 gi|344211322|ref|YP_004795642.1| - 0.19 10.7 5.9 0.23 10.5 4.1 1.1 1 0 0 1 1 1 0 Cation efflux family DUF4199 PF13858.1 gi|344211322|ref|YP_004795642.1| - 0.84 9.5 3.7 2.9 7.7 1.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) DUF4231 PF14015.1 gi|344211322|ref|YP_004795642.1| - 2.3 8.2 9.5 0.27 11.2 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) DUF2975 PF11188.3 gi|344211322|ref|YP_004795642.1| - 2.9 7.6 11.2 0.76 9.5 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) FtsL PF04999.8 gi|344211322|ref|YP_004795642.1| - 4.3 7.1 5.8 11 5.7 1.6 2.2 2 0 0 2 2 2 0 Cell division protein FtsL Trypsin_2 PF13365.1 gi|344211323|ref|YP_004795643.1| - 3e-18 65.9 1.8 6.4e-18 64.8 1.3 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|344211323|ref|YP_004795643.1| - 5.9e-12 45.6 0.3 3.8e-11 42.9 0.2 2.0 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|344211323|ref|YP_004795643.1| - 1.2e-11 44.2 0.1 3e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 PDZ domain Pico_P2A PF00947.14 gi|344211323|ref|YP_004795643.1| - 0.0036 17.1 0.5 0.0097 15.7 0.0 1.8 2 0 0 2 2 2 1 Picornavirus core protein 2A PDZ PF00595.19 gi|344211323|ref|YP_004795643.1| - 0.1 12.7 0.1 1.5 9.0 0.0 2.4 2 0 0 2 2 2 0 PDZ domain (Also known as DHR or GLGF) YbhQ PF11076.3 gi|344211324|ref|YP_004795644.1| - 0.016 14.7 0.3 0.019 14.5 0.2 1.0 1 0 0 1 1 1 0 Putative inner membrane protein YbhQ PetL PF05115.9 gi|344211324|ref|YP_004795644.1| - 0.13 12.2 3.2 6.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit VI (PetL) E1-E2_ATPase PF00122.15 gi|344211325|ref|YP_004795645.1| - 1.8e-60 203.8 0.9 3.3e-60 203.0 0.6 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|344211325|ref|YP_004795645.1| - 4.5e-47 161.2 4.8 1.1e-46 159.9 3.3 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|344211325|ref|YP_004795645.1| - 1.4e-28 98.8 4.5 6.8e-14 51.7 0.0 4.0 5 0 0 5 5 5 2 Heavy-metal-associated domain HAD PF12710.2 gi|344211325|ref|YP_004795645.1| - 6e-13 49.3 0.5 1.9e-12 47.7 0.4 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344211325|ref|YP_004795645.1| - 0.0064 16.1 0.8 0.013 15.1 0.6 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase SpoA PF01052.15 gi|344211325|ref|YP_004795645.1| - 0.037 13.6 0.2 13 5.4 0.0 3.1 2 0 0 2 2 2 0 Surface presentation of antigens (SPOA) Lactamase_B_3 PF13483.1 gi|344211326|ref|YP_004795646.1| - 2.9e-22 79.1 0.2 4.5e-22 78.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|344211326|ref|YP_004795646.1| - 2.4e-15 56.6 0.4 3e-15 56.2 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|344211326|ref|YP_004795646.1| - 6.5e-07 29.1 11.3 2.1e-06 27.5 7.8 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HATPase_c PF02518.21 gi|344211327|ref|YP_004795647.1| - 5.7e-13 48.5 0.0 1.1e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344211327|ref|YP_004795647.1| - 1.4e-09 37.9 0.3 8.6e-09 35.4 0.0 2.3 3 0 0 3 3 3 1 PAS fold HATPase_c_2 PF13581.1 gi|344211327|ref|YP_004795647.1| - 4.8e-06 26.3 0.0 1.2e-05 25.1 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Response_reg PF00072.19 gi|344211327|ref|YP_004795647.1| - 0.0068 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|344211327|ref|YP_004795647.1| - 0.012 15.6 0.5 0.059 13.3 0.3 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain DUF1841 PF08897.6 gi|344211328|ref|YP_004795648.1| - 0.11 12.3 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1841) zf-TFIIB PF13453.1 gi|344211328|ref|YP_004795648.1| - 0.15 11.2 1.1 0.32 10.2 0.7 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-dskA_traR PF01258.12 gi|344211328|ref|YP_004795648.1| - 1.2 8.9 4.6 2.6 7.8 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DNA_RNApol_7kD PF03604.8 gi|344211328|ref|YP_004795648.1| - 1.8 8.0 4.5 4.1 6.9 3.2 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit ILVD_EDD PF00920.16 gi|344211329|ref|YP_004795649.1| - 9.7e-204 677.5 2.0 1.1e-203 677.4 1.4 1.0 1 0 0 1 1 1 1 Dehydratase family GHMP_kinases_N PF00288.21 gi|344211330|ref|YP_004795650.1| - 1e-06 28.6 0.1 2.5e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|344211330|ref|YP_004795650.1| - 0.011 15.9 0.0 0.044 13.9 0.0 1.9 2 0 0 2 2 2 0 GHMP kinases C terminal Oxidored_FMN PF00724.15 gi|344211331|ref|YP_004795651.1| - 8.8e-72 241.9 0.0 1.1e-71 241.6 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|344211331|ref|YP_004795651.1| - 0.0029 16.4 0.0 0.0044 15.9 0.0 1.2 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) DUF368 PF04018.8 gi|344211332|ref|YP_004795652.1| - 1.5e-60 204.5 21.5 2.1e-60 204.1 14.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) GARS_A PF01071.14 gi|344211334|ref|YP_004795654.1| - 1.4e-10 41.0 0.0 2.8e-10 40.0 0.0 1.5 1 1 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_C PF02843.11 gi|344211334|ref|YP_004795654.1| - 1.6e-08 34.6 0.1 3.2e-08 33.6 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|344211334|ref|YP_004795654.1| - 2.3e-07 30.7 0.0 3.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Glyco_transf_28 PF03033.15 gi|344211334|ref|YP_004795654.1| - 0.029 14.1 0.0 0.94 9.2 0.0 2.5 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Prominin PF05478.6 gi|344211335|ref|YP_004795655.1| - 0.0099 13.4 0.3 0.01 13.3 0.2 1.0 1 0 0 1 1 1 1 Prominin TelA PF05816.6 gi|344211335|ref|YP_004795655.1| - 0.024 13.3 0.1 0.028 13.1 0.1 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) NPV_P10 PF05531.7 gi|344211335|ref|YP_004795655.1| - 0.044 14.0 0.5 0.24 11.6 0.1 1.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.1 gi|344211335|ref|YP_004795655.1| - 0.046 14.1 3.2 4.5 7.7 0.4 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) YfdX PF10938.3 gi|344211335|ref|YP_004795655.1| - 0.056 13.0 2.0 0.47 10.1 0.1 2.0 2 0 0 2 2 2 0 YfdX protein Flagellin_C PF00700.16 gi|344211335|ref|YP_004795655.1| - 0.26 11.4 1.6 5 7.3 0.2 2.5 2 1 0 2 2 2 0 Bacterial flagellin C-terminal helical region V-SNARE PF05008.10 gi|344211335|ref|YP_004795655.1| - 0.87 9.7 5.2 7.8 6.7 0.2 2.2 1 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF883 PF05957.8 gi|344211335|ref|YP_004795655.1| - 0.89 9.9 4.0 12 6.3 2.8 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF3416 PF11896.3 gi|344211335|ref|YP_004795655.1| - 1.1 9.1 3.3 1.8 8.4 2.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3416) DUF1320 PF07030.7 gi|344211335|ref|YP_004795655.1| - 1.5 8.5 4.6 19 5.0 3.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1320) Hpt PF01627.18 gi|344211335|ref|YP_004795655.1| - 1.7 8.7 6.2 6.9 6.7 1.7 2.3 2 0 0 2 2 2 0 Hpt domain DUF4355 PF14265.1 gi|344211335|ref|YP_004795655.1| - 2.2 8.2 5.8 8 6.4 4.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4355) HTH_24 PF13412.1 gi|344211337|ref|YP_004795657.1| - 1.5e-13 49.8 0.4 1.5e-09 37.0 0.1 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344211337|ref|YP_004795657.1| - 5.9e-10 38.5 1.5 1.6e-06 27.4 0.1 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|344211337|ref|YP_004795657.1| - 7.7e-06 25.4 0.2 4.9e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_Tnp_Tc3_2 PF01498.13 gi|344211337|ref|YP_004795657.1| - 1.4e-05 25.0 0.0 0.25 11.4 0.0 2.5 2 0 0 2 2 2 2 Transposase MarR PF01047.17 gi|344211337|ref|YP_004795657.1| - 4.1e-05 23.1 0.1 0.0004 20.0 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|344211337|ref|YP_004795657.1| - 9.1e-05 21.9 0.1 0.00023 20.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|344211337|ref|YP_004795657.1| - 0.00027 20.7 0.0 0.00062 19.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|344211337|ref|YP_004795657.1| - 0.00048 20.2 0.8 0.0012 19.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|344211337|ref|YP_004795657.1| - 0.00082 18.9 0.2 0.0093 15.5 0.0 2.5 3 0 0 3 3 3 1 HTH domain LacI PF00356.16 gi|344211337|ref|YP_004795657.1| - 0.0027 17.2 0.5 0.19 11.3 0.0 2.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_IclR PF09339.5 gi|344211337|ref|YP_004795657.1| - 0.0049 16.4 0.4 0.31 10.6 0.0 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|344211337|ref|YP_004795657.1| - 0.0059 16.5 0.1 0.024 14.5 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.8 gi|344211337|ref|YP_004795657.1| - 0.0095 15.9 0.0 0.018 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344211337|ref|YP_004795657.1| - 0.0095 15.2 0.0 0.03 13.6 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 SlyX PF04102.7 gi|344211337|ref|YP_004795657.1| - 0.032 14.6 0.0 0.12 12.7 0.0 2.0 1 0 0 1 1 1 0 SlyX HTH_23 PF13384.1 gi|344211337|ref|YP_004795657.1| - 0.032 13.8 0.0 0.085 12.5 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_19 PF12844.2 gi|344211337|ref|YP_004795657.1| - 0.039 14.0 0.0 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|344211337|ref|YP_004795657.1| - 0.047 13.2 0.0 0.15 11.6 0.0 1.9 1 0 0 1 1 1 0 HTH DNA binding domain HTH_37 PF13744.1 gi|344211337|ref|YP_004795657.1| - 0.049 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CENP-B_N PF04218.8 gi|344211337|ref|YP_004795657.1| - 0.053 12.9 0.1 0.099 12.0 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_28 PF13518.1 gi|344211337|ref|YP_004795657.1| - 0.1 12.6 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain FlaC_arch PF05377.6 gi|344211337|ref|YP_004795657.1| - 0.14 12.1 0.4 0.4 10.6 0.1 1.9 2 0 0 2 2 1 0 Flagella accessory protein C (FlaC) Pex19 PF04614.7 gi|344211337|ref|YP_004795657.1| - 0.26 10.8 3.6 0.33 10.5 0.3 2.1 2 0 0 2 2 2 0 Pex19 protein family TFIIS_C PF01096.13 gi|344211338|ref|YP_004795658.1| - 1e-17 63.4 3.4 1e-17 63.4 2.4 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|344211338|ref|YP_004795658.1| - 3.6e-07 29.8 10.5 2.1e-05 24.2 0.8 2.6 2 1 0 2 2 2 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|344211338|ref|YP_004795658.1| - 1.1e-06 28.1 1.3 1.1e-06 28.1 0.9 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|344211338|ref|YP_004795658.1| - 2e-05 23.9 12.8 0.27 10.7 1.3 3.5 3 1 0 3 3 3 3 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|344211338|ref|YP_004795658.1| - 0.00041 19.4 13.3 0.02 14.1 1.3 3.9 3 1 1 4 4 4 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|344211338|ref|YP_004795658.1| - 0.0005 19.6 12.8 0.037 13.6 1.3 2.8 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|344211338|ref|YP_004795658.1| - 0.0013 18.4 10.5 0.0015 18.3 1.0 3.1 2 1 1 3 3 3 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344211338|ref|YP_004795658.1| - 0.0021 17.9 12.9 0.77 9.7 1.9 3.7 3 1 0 3 3 3 1 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|344211338|ref|YP_004795658.1| - 0.0033 17.1 10.5 0.032 13.9 1.9 3.2 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|344211338|ref|YP_004795658.1| - 0.02 14.6 9.2 0.41 10.3 1.2 2.6 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|344211338|ref|YP_004795658.1| - 0.03 13.8 5.4 14 5.2 0.0 4.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF2318 PF10080.4 gi|344211338|ref|YP_004795658.1| - 0.039 13.7 8.9 0.057 13.1 1.1 2.9 2 1 1 3 3 3 0 Predicted membrane protein (DUF2318) IBR PF01485.16 gi|344211338|ref|YP_004795658.1| - 0.058 13.2 10.9 0.29 11.0 0.6 3.3 1 1 2 3 3 3 0 IBR domain zinc_ribbon_2 PF13240.1 gi|344211338|ref|YP_004795658.1| - 0.07 12.6 14.3 1.6 8.3 0.2 4.0 3 1 1 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|344211338|ref|YP_004795658.1| - 0.079 12.7 0.7 0.079 12.7 0.5 2.8 2 1 0 2 2 2 0 zinc-ribbons zinc_ribbon_5 PF13719.1 gi|344211338|ref|YP_004795658.1| - 0.081 12.5 9.7 1.1 8.9 0.3 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|344211338|ref|YP_004795658.1| - 0.084 12.8 12.0 6.5 6.8 2.9 4.0 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 GFA PF04828.9 gi|344211338|ref|YP_004795658.1| - 0.092 12.6 11.5 3.5 7.6 0.0 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|344211338|ref|YP_004795658.1| - 0.094 12.4 13.0 16 5.2 0.4 4.2 3 1 1 4 4 4 0 Nudix N-terminal GATA PF00320.22 gi|344211338|ref|YP_004795658.1| - 0.12 11.6 8.0 1.6 8.1 0.3 3.6 3 1 0 3 3 3 0 GATA zinc finger Cytochrome_C554 PF13435.1 gi|344211338|ref|YP_004795658.1| - 0.16 11.9 5.2 0.11 12.5 2.5 1.5 1 1 0 1 1 1 0 Cytochrome c554 and c-prime PHD_2 PF13831.1 gi|344211338|ref|YP_004795658.1| - 0.17 11.2 7.4 28 4.1 0.1 4.0 4 0 0 4 4 4 0 PHD-finger TF_Zn_Ribbon PF08271.7 gi|344211338|ref|YP_004795658.1| - 0.18 11.1 15.1 5.4 6.4 0.1 4.5 3 2 1 4 4 4 0 TFIIB zinc-binding Ribosomal_L44 PF00935.14 gi|344211338|ref|YP_004795658.1| - 0.22 11.5 4.0 13 5.8 0.0 3.5 4 0 0 4 4 4 0 Ribosomal protein L44 zinc_ribbon_4 PF13717.1 gi|344211338|ref|YP_004795658.1| - 0.31 10.7 11.6 1.2 8.8 0.5 3.5 4 0 0 4 4 3 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|344211338|ref|YP_004795658.1| - 0.33 10.6 6.4 2.3 7.9 0.7 3.1 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) UPF0547 PF10571.4 gi|344211338|ref|YP_004795658.1| - 0.34 10.6 14.8 0.87 9.3 0.4 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 zf-C2HC5 PF06221.8 gi|344211338|ref|YP_004795658.1| - 0.4 10.4 3.1 0.85 9.4 0.1 2.6 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type ADK_lid PF05191.9 gi|344211338|ref|YP_004795658.1| - 0.8 9.4 12.9 15 5.3 0.1 4.0 3 1 0 3 3 3 0 Adenylate kinase, active site lid zf-trcl PF13451.1 gi|344211338|ref|YP_004795658.1| - 0.88 9.2 12.1 7.7 6.2 0.1 4.2 4 0 0 4 4 4 0 Probable zinc-binding domain YhfH PF14149.1 gi|344211338|ref|YP_004795658.1| - 0.94 9.3 14.0 13 5.6 0.0 4.3 3 1 1 4 4 4 0 YhfH-like protein A2L_zn_ribbon PF08792.5 gi|344211338|ref|YP_004795658.1| - 1.2 8.6 17.5 2.8 7.5 3.2 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain Zn_ribbon_2 PF12674.2 gi|344211338|ref|YP_004795658.1| - 1.3 9.3 0.1 1.3 9.3 0.1 3.1 3 1 0 3 3 3 0 Putative zinc ribbon domain zf-HYPF PF07503.7 gi|344211338|ref|YP_004795658.1| - 1.6 8.2 7.9 13 5.2 0.0 4.0 4 0 0 4 4 4 0 HypF finger C1_1 PF00130.17 gi|344211338|ref|YP_004795658.1| - 2 8.2 10.9 0.37 10.5 0.6 3.0 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) PhnA_Zn_Ribbon PF08274.7 gi|344211338|ref|YP_004795658.1| - 2 8.2 15.3 21 5.0 0.1 4.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.1 gi|344211338|ref|YP_004795658.1| - 2 8.7 15.3 8.8 6.7 1.9 3.5 1 1 2 3 3 3 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|344211338|ref|YP_004795658.1| - 2.2 7.8 15.1 4.1 6.9 0.3 4.1 3 1 1 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 Terminase_GpA PF05876.7 gi|344211338|ref|YP_004795658.1| - 2.3 6.4 7.7 2.2 6.5 2.2 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Cytochrom_CIII PF02085.11 gi|344211338|ref|YP_004795658.1| - 2.8 8.0 7.9 34 4.6 1.3 2.9 1 1 2 3 3 3 0 Class III cytochrome C family Sgf11 PF08209.6 gi|344211338|ref|YP_004795658.1| - 4 6.8 8.5 16 4.9 0.1 3.7 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) GCC2_GCC3 PF07699.8 gi|344211338|ref|YP_004795658.1| - 4.2 7.0 12.2 1.6 8.3 0.2 3.5 2 2 0 2 2 2 0 GCC2 and GCC3 zf-RING_3 PF14369.1 gi|344211338|ref|YP_004795658.1| - 5.5 7.0 9.3 18 5.4 0.1 3.1 3 0 0 3 3 3 0 zinc-finger zf-NADH-PPase PF09297.6 gi|344211338|ref|YP_004795658.1| - 5.8 6.5 18.0 2 7.9 3.7 3.8 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain PHD PF00628.24 gi|344211338|ref|YP_004795658.1| - 8.3 6.1 15.6 18 5.0 2.0 3.2 2 2 0 2 2 2 0 PHD-finger Filament PF00038.16 gi|344211340|ref|YP_004795660.1| - 4e-06 26.5 3.7 6.2e-06 25.8 2.5 1.2 1 0 0 1 1 1 1 Intermediate filament protein CHASE3 PF05227.8 gi|344211340|ref|YP_004795660.1| - 2.7e-05 23.8 3.7 2.7e-05 23.8 2.5 3.0 2 1 2 4 4 4 1 CHASE3 domain RHH_1 PF01402.16 gi|344211340|ref|YP_004795660.1| - 0.00012 21.7 1.4 0.00095 18.9 0.0 3.1 4 0 0 4 4 2 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.7 gi|344211340|ref|YP_004795660.1| - 0.00084 19.1 2.2 0.25 11.1 0.3 2.6 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|344211340|ref|YP_004795660.1| - 0.0095 16.1 5.6 0.036 14.3 0.4 2.9 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein PilJ PF13675.1 gi|344211340|ref|YP_004795660.1| - 0.013 15.8 5.8 0.092 13.0 0.8 2.4 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term AAA_13 PF13166.1 gi|344211340|ref|YP_004795660.1| - 0.02 13.3 2.3 0.026 12.9 1.6 1.1 1 0 0 1 1 1 0 AAA domain DUF948 PF06103.6 gi|344211340|ref|YP_004795660.1| - 0.021 14.6 3.6 0.79 9.6 0.1 2.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.4 gi|344211340|ref|YP_004795660.1| - 0.026 14.3 3.9 0.055 13.3 2.4 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Sipho_Gp157 PF05565.6 gi|344211340|ref|YP_004795660.1| - 0.031 13.8 6.3 0.32 10.5 0.8 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 Apolipoprotein PF01442.13 gi|344211340|ref|YP_004795660.1| - 0.037 13.5 8.4 0.71 9.3 5.6 2.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain zf-ribbon_3 PF13248.1 gi|344211340|ref|YP_004795660.1| - 0.047 12.8 1.3 0.098 11.8 0.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain IncA PF04156.9 gi|344211340|ref|YP_004795660.1| - 0.052 13.1 5.9 0.24 10.9 3.7 1.9 1 1 1 2 2 2 0 IncA protein zinc_ribbon_4 PF13717.1 gi|344211340|ref|YP_004795660.1| - 0.082 12.6 2.7 3.6 7.3 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HSBP1 PF06825.7 gi|344211340|ref|YP_004795660.1| - 0.089 12.3 5.0 3.8 7.1 0.1 3.4 3 0 0 3 3 3 0 Heat shock factor binding protein 1 FlxA PF14282.1 gi|344211340|ref|YP_004795660.1| - 0.1 12.5 1.3 0.38 10.7 0.1 2.2 1 1 1 2 2 2 0 FlxA-like protein zinc_ribbon_5 PF13719.1 gi|344211340|ref|YP_004795660.1| - 0.11 12.1 3.0 4 7.1 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF4446 PF14584.1 gi|344211340|ref|YP_004795660.1| - 0.11 12.3 0.4 0.37 10.6 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF972 PF06156.8 gi|344211340|ref|YP_004795660.1| - 0.13 12.6 1.5 0.64 10.3 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DZR PF12773.2 gi|344211340|ref|YP_004795660.1| - 0.13 12.0 1.3 0.25 11.1 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon BLOC1_2 PF10046.4 gi|344211340|ref|YP_004795660.1| - 0.13 12.3 1.4 6.7 6.9 0.4 2.8 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Crust_neuro_H PF03858.8 gi|344211340|ref|YP_004795660.1| - 0.15 12.6 0.2 1.3 9.6 0.0 2.4 2 0 0 2 2 2 0 Crustacean neurohormone H Syntaxin PF00804.20 gi|344211340|ref|YP_004795660.1| - 0.2 11.8 5.0 6.3 7.0 0.2 2.4 1 1 1 2 2 2 0 Syntaxin UPF0547 PF10571.4 gi|344211340|ref|YP_004795660.1| - 0.36 10.5 2.0 0.73 9.5 1.4 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Mnd1 PF03962.10 gi|344211340|ref|YP_004795660.1| - 0.57 9.8 4.4 0.26 10.9 1.3 1.7 1 1 1 2 2 2 0 Mnd1 family MtrG PF04210.8 gi|344211340|ref|YP_004795660.1| - 0.59 9.8 5.2 2.4 7.8 0.3 3.1 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G Phage_GP20 PF06810.6 gi|344211340|ref|YP_004795660.1| - 0.63 9.4 6.6 0.71 9.3 0.4 2.8 1 1 2 3 3 3 0 Phage minor structural protein GP20 Med2 PF11214.3 gi|344211340|ref|YP_004795660.1| - 0.64 10.0 2.9 2 8.4 0.2 2.2 1 1 1 2 2 2 0 Mediator complex subunit 2 Laminin_I PF06008.9 gi|344211340|ref|YP_004795660.1| - 0.66 9.2 6.7 1.1 8.4 4.7 1.4 1 1 0 1 1 1 0 Laminin Domain I CCDC-167 PF15188.1 gi|344211340|ref|YP_004795660.1| - 0.87 9.5 3.2 17 5.4 1.1 2.7 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Atg14 PF10186.4 gi|344211340|ref|YP_004795660.1| - 1.1 8.1 5.1 1.1 8.1 1.1 2.0 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1664 PF07889.7 gi|344211340|ref|YP_004795660.1| - 1.5 8.6 4.9 25 4.6 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Herpes_UL25 PF01499.11 gi|344211340|ref|YP_004795660.1| - 1.6 6.9 8.4 0.38 8.9 1.6 2.0 1 1 1 2 2 2 0 Herpesvirus UL25 family Osmo_CC PF08946.5 gi|344211340|ref|YP_004795660.1| - 2.1 8.4 5.1 12 6.0 0.3 3.2 3 0 0 3 3 3 0 Osmosensory transporter coiled coil Spectrin PF00435.16 gi|344211340|ref|YP_004795660.1| - 3.1 8.1 10.0 4 7.7 0.6 3.5 1 1 2 4 4 4 0 Spectrin repeat DUF1515 PF07439.6 gi|344211340|ref|YP_004795660.1| - 3.2 7.5 7.3 1 9.1 1.1 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) Pox_A_type_inc PF04508.7 gi|344211340|ref|YP_004795660.1| - 6 6.9 6.0 33 4.6 0.0 4.2 5 1 1 6 6 3 0 Viral A-type inclusion protein repeat FYVE_2 PF02318.11 gi|344211340|ref|YP_004795660.1| - 6.6 6.6 6.6 2.8 7.8 0.6 2.7 1 1 1 3 3 3 0 FYVE-type zinc finger KaiC PF06745.8 gi|344211341|ref|YP_004795661.1| - 1.4e-10 40.6 0.1 7.9e-05 21.8 0.0 2.1 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|344211341|ref|YP_004795661.1| - 4.7e-06 26.1 0.8 0.012 15.0 0.1 2.2 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.6 gi|344211341|ref|YP_004795661.1| - 0.048 12.5 0.0 0.082 11.7 0.0 1.4 1 0 0 1 1 1 0 Rad51 Elong_Iki1 PF10483.4 gi|344211341|ref|YP_004795661.1| - 0.19 11.0 0.3 0.51 9.6 0.2 1.6 1 1 0 1 1 1 0 Elongator subunit Iki1 DUF422 PF04240.7 gi|344211342|ref|YP_004795662.1| - 8.2e-80 267.2 18.2 1.1e-79 266.8 12.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF422) TMEM238 PF15125.1 gi|344211342|ref|YP_004795662.1| - 0.26 11.2 0.2 0.26 11.2 0.1 3.3 2 1 0 2 2 2 0 TMEM238 protein family DUF3267 PF11667.3 gi|344211342|ref|YP_004795662.1| - 7.6 6.7 7.2 14 5.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3267) UbiA PF01040.13 gi|344211343|ref|YP_004795663.1| - 1.2e-26 93.5 23.0 1.7e-26 93.0 16.0 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.19 gi|344211344|ref|YP_004795664.1| - 8.8e-24 84.3 0.3 9.6e-23 80.9 0.2 2.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase DAO PF01266.19 gi|344211344|ref|YP_004795664.1| - 3.2e-18 65.7 0.0 3.6e-08 32.6 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|344211344|ref|YP_004795664.1| - 1.6e-17 63.2 0.1 3.9e-17 62.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344211344|ref|YP_004795664.1| - 2.1e-07 29.7 0.0 0.00048 18.7 0.3 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|344211344|ref|YP_004795664.1| - 3.4e-07 29.6 0.0 5.4e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344211344|ref|YP_004795664.1| - 1.7e-06 27.1 1.4 3.8e-06 26.0 1.0 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|344211344|ref|YP_004795664.1| - 4e-06 27.1 1.7 0.00011 22.5 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344211344|ref|YP_004795664.1| - 5.2e-06 26.6 0.1 0.0027 17.7 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|344211344|ref|YP_004795664.1| - 2.9e-05 24.0 0.1 8e-05 22.6 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|344211344|ref|YP_004795664.1| - 7.1e-05 22.0 0.3 0.00012 21.2 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|344211344|ref|YP_004795664.1| - 0.00013 20.9 0.5 0.00032 19.7 0.4 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|344211344|ref|YP_004795664.1| - 0.00017 20.7 0.3 0.00029 20.0 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Strep_67kDa_ant PF06100.6 gi|344211344|ref|YP_004795664.1| - 0.048 12.0 0.0 0.073 11.4 0.0 1.2 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family 3HCDH_N PF02737.13 gi|344211344|ref|YP_004795664.1| - 0.066 12.8 0.2 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|344211344|ref|YP_004795664.1| - 0.076 11.6 0.3 0.13 10.8 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|344211344|ref|YP_004795664.1| - 0.094 12.9 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|344211344|ref|YP_004795664.1| - 0.12 12.1 1.8 12 5.5 0.1 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|344211344|ref|YP_004795664.1| - 0.2 11.0 0.3 0.54 9.6 0.1 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|344211344|ref|YP_004795664.1| - 0.25 11.0 0.1 0.4 10.4 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Peptidase_M24 PF00557.19 gi|344211345|ref|YP_004795665.1| - 1.2e-40 139.3 0.7 1.5e-40 138.9 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|344211345|ref|YP_004795665.1| - 4e-08 33.8 0.6 9.9e-08 32.5 0.1 1.9 2 1 0 2 2 2 1 Creatinase/Prolidase N-terminal domain AMP_N PF05195.11 gi|344211345|ref|YP_004795665.1| - 0.046 13.1 0.7 0.21 10.9 0.0 2.3 3 0 0 3 3 3 0 Aminopeptidase P, N-terminal domain RHH_1 PF01402.16 gi|344211347|ref|YP_004795667.1| - 6.9e-05 22.5 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Ribosomal_L15e PF00827.12 gi|344211347|ref|YP_004795667.1| - 0.12 11.8 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Ribosomal L15 Glyoxalase_2 PF12681.2 gi|344211350|ref|YP_004795670.1| - 4.9e-17 62.4 1.2 1.7e-08 35.0 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344211350|ref|YP_004795670.1| - 2.8e-10 40.2 0.0 2.6e-05 24.1 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|344211350|ref|YP_004795670.1| - 0.068 13.1 0.1 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PhnA_Zn_Ribbon PF08274.7 gi|344211351|ref|YP_004795671.1| - 8.5e-05 22.2 0.1 0.00018 21.2 0.0 1.5 1 1 1 2 2 2 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|344211351|ref|YP_004795671.1| - 0.0015 18.3 0.4 0.0023 17.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|344211351|ref|YP_004795671.1| - 0.0031 17.1 2.9 0.23 11.1 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|344211351|ref|YP_004795671.1| - 0.0033 17.3 0.9 0.77 9.7 0.0 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|344211351|ref|YP_004795671.1| - 0.0034 16.5 0.7 0.36 10.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|344211351|ref|YP_004795671.1| - 0.0043 17.2 0.7 0.042 14.0 0.5 2.0 1 1 0 1 1 1 1 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|344211351|ref|YP_004795671.1| - 0.0046 16.3 0.4 0.66 9.5 0.0 2.2 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|344211351|ref|YP_004795671.1| - 0.0072 16.3 1.2 0.46 10.5 0.0 2.4 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS91 PF14319.1 gi|344211351|ref|YP_004795671.1| - 0.015 14.8 0.4 0.7 9.4 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|344211351|ref|YP_004795671.1| - 0.016 14.4 1.8 0.066 12.5 1.3 1.9 1 1 2 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|344211351|ref|YP_004795671.1| - 0.017 14.6 1.9 1.5 8.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.7 gi|344211351|ref|YP_004795671.1| - 0.017 13.5 1.1 0.018 13.4 0.8 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) GFA PF04828.9 gi|344211351|ref|YP_004795671.1| - 0.018 14.9 2.0 1.7 8.6 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Rubredoxin PF00301.15 gi|344211351|ref|YP_004795671.1| - 0.021 14.7 0.7 2 8.3 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin Ogr_Delta PF04606.7 gi|344211351|ref|YP_004795671.1| - 0.024 14.2 1.0 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF2296 PF10058.4 gi|344211351|ref|YP_004795671.1| - 0.026 14.2 0.4 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-NADH-PPase PF09297.6 gi|344211351|ref|YP_004795671.1| - 0.042 13.3 5.0 0.89 9.1 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1272 PF06906.6 gi|344211351|ref|YP_004795671.1| - 0.052 13.3 0.8 0.89 9.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) OrfB_Zn_ribbon PF07282.6 gi|344211351|ref|YP_004795671.1| - 0.055 13.1 1.2 0.16 11.6 0.8 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-LITAF-like PF10601.4 gi|344211351|ref|YP_004795671.1| - 0.056 13.3 1.3 1 9.2 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|344211351|ref|YP_004795671.1| - 0.069 12.6 0.3 1.9 8.0 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2H2 PF00096.21 gi|344211351|ref|YP_004795671.1| - 0.074 13.4 2.9 2.4 8.6 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-DNA_Pol PF08996.5 gi|344211351|ref|YP_004795671.1| - 0.087 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger DUF329 PF03884.9 gi|344211351|ref|YP_004795671.1| - 0.1 12.2 0.4 6.4 6.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DNA_ligase_ZBD PF03119.11 gi|344211351|ref|YP_004795671.1| - 0.12 12.0 3.3 5.8 6.7 0.1 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|344211351|ref|YP_004795671.1| - 0.15 11.8 1.8 1.4 8.7 1.2 2.0 1 1 1 2 2 2 0 zinc-ribbons Lar_restr_allev PF14354.1 gi|344211351|ref|YP_004795671.1| - 0.2 11.9 3.1 0.69 10.2 1.9 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-HIT PF04438.11 gi|344211351|ref|YP_004795671.1| - 0.22 11.1 1.4 2.5 7.7 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-C2H2_4 PF13894.1 gi|344211351|ref|YP_004795671.1| - 0.23 11.8 2.6 6 7.4 0.5 2.7 2 1 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|344211351|ref|YP_004795671.1| - 0.27 11.6 4.6 0.41 11.0 0.5 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|344211351|ref|YP_004795671.1| - 0.27 11.0 6.8 1.8 8.3 4.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344211351|ref|YP_004795671.1| - 0.28 10.9 1.8 11 5.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344211351|ref|YP_004795671.1| - 0.3 10.6 1.7 9.3 5.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|344211351|ref|YP_004795671.1| - 0.35 11.0 4.1 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.1 gi|344211351|ref|YP_004795671.1| - 0.35 10.8 1.4 10 6.1 0.0 2.1 1 1 1 2 2 2 0 CpXC protein DUF35_N PF12172.3 gi|344211351|ref|YP_004795671.1| - 0.36 10.7 3.1 17 5.4 0.2 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.1 gi|344211351|ref|YP_004795671.1| - 0.39 10.5 4.9 1.9 8.4 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.2 gi|344211351|ref|YP_004795671.1| - 5.7 7.0 7.9 10 6.2 0.4 2.2 1 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 HMGL-like PF00682.14 gi|344211353|ref|YP_004795673.1| - 9.8e-70 234.8 1.9 1.6e-69 234.2 1.3 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|344211353|ref|YP_004795673.1| - 0.017 14.4 0.3 0.062 12.5 0.1 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel TPP_enzyme_N PF02776.13 gi|344211354|ref|YP_004795674.1| - 3.1e-53 179.7 0.3 7.4e-53 178.5 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|344211354|ref|YP_004795674.1| - 1.3e-51 174.2 0.3 4.6e-51 172.3 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|344211354|ref|YP_004795674.1| - 1.1e-43 148.2 0.0 2.3e-43 147.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|344211354|ref|YP_004795674.1| - 0.011 15.3 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit XFP_N PF09364.5 gi|344211354|ref|YP_004795674.1| - 0.09 11.3 0.0 0.14 10.7 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain ALS_ss_C PF10369.4 gi|344211355|ref|YP_004795675.1| - 3.7e-23 81.0 0.2 7e-23 80.1 0.1 1.5 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|344211355|ref|YP_004795675.1| - 1.2e-13 50.6 0.0 2.5e-13 49.6 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|344211355|ref|YP_004795675.1| - 5e-13 48.2 0.3 1.7e-12 46.4 0.0 2.1 2 0 0 2 2 2 1 ACT domain NIL PF09383.5 gi|344211355|ref|YP_004795675.1| - 0.0037 16.7 0.0 0.59 9.7 0.0 2.6 2 1 0 2 2 2 1 NIL domain ACT_4 PF13291.1 gi|344211355|ref|YP_004795675.1| - 0.0048 17.2 0.0 0.0092 16.3 0.0 1.6 1 0 0 1 1 1 1 ACT domain Acylphosphatase PF00708.13 gi|344211355|ref|YP_004795675.1| - 0.018 15.1 0.2 8.1 6.6 0.0 2.7 3 0 0 3 3 3 0 Acylphosphatase TPR_21 PF09976.4 gi|344211355|ref|YP_004795675.1| - 0.088 12.7 0.2 0.13 12.1 0.2 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat WIYLD PF10440.4 gi|344211355|ref|YP_004795675.1| - 0.13 12.2 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain KH_1 PF00013.24 gi|344211355|ref|YP_004795675.1| - 0.25 11.0 1.6 3.4 7.3 0.2 2.8 2 1 1 3 3 3 0 KH domain IlvN PF07991.7 gi|344211356|ref|YP_004795676.1| - 8.6e-71 236.6 0.1 1.2e-70 236.1 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|344211356|ref|YP_004795676.1| - 1.3e-53 180.7 0.3 1.9e-53 180.3 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|344211356|ref|YP_004795676.1| - 2e-07 31.3 0.0 4.1e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|344211356|ref|YP_004795676.1| - 1.2e-05 24.5 0.0 2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|344211356|ref|YP_004795676.1| - 0.00022 21.0 0.0 0.00041 20.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|344211356|ref|YP_004795676.1| - 0.00074 18.9 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|344211356|ref|YP_004795676.1| - 0.059 13.1 0.3 1.1 8.9 0.2 2.6 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding_2 PF13380.1 gi|344211356|ref|YP_004795676.1| - 0.11 12.6 1.0 23 5.2 0.0 2.9 3 0 0 3 3 3 0 CoA binding domain Aconitase PF00330.15 gi|344211358|ref|YP_004795678.1| - 1e-151 505.5 0.0 1.2e-151 505.4 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|344211358|ref|YP_004795678.1| - 0.014 14.0 0.0 0.021 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|344211359|ref|YP_004795679.1| - 1.5e-19 70.3 0.0 2.2e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain GDPD_2 PF13653.1 gi|344211359|ref|YP_004795679.1| - 0.053 13.7 0.1 3.3 8.0 0.0 2.7 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Cas_Cas02710 PF09670.5 gi|344211360|ref|YP_004795680.1| - 5e-05 22.1 0.0 6.3e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) adh_short PF00106.20 gi|344211360|ref|YP_004795680.1| - 0.0012 18.7 0.2 0.0023 17.8 0.1 1.5 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344211360|ref|YP_004795680.1| - 0.0028 17.3 0.1 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 KR domain HTH_27 PF13463.1 gi|344211360|ref|YP_004795680.1| - 0.019 15.2 0.0 0.061 13.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|344211360|ref|YP_004795680.1| - 0.076 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) ThiC PF01964.13 gi|344211360|ref|YP_004795680.1| - 0.1 11.0 0.1 0.15 10.5 0.1 1.1 1 0 0 1 1 1 0 ThiC family Iso_dh PF00180.15 gi|344211361|ref|YP_004795681.1| - 5e-93 311.8 0.1 5.6e-93 311.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoRC PF00455.17 gi|344211362|ref|YP_004795682.1| - 1.4e-52 177.5 0.1 2e-52 177.0 0.0 1.2 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|344211362|ref|YP_004795682.1| - 1.7e-16 59.4 0.1 2.9e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|344211362|ref|YP_004795682.1| - 4.1e-08 32.7 0.2 6.7e-08 32.0 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|344211362|ref|YP_004795682.1| - 1.4e-06 27.8 0.0 2.7e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344211362|ref|YP_004795682.1| - 5e-06 26.0 0.2 1.4e-05 24.6 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344211362|ref|YP_004795682.1| - 3.4e-05 23.5 0.5 0.00013 21.6 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|344211362|ref|YP_004795682.1| - 3.8e-05 23.0 0.0 0.00012 21.4 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|344211362|ref|YP_004795682.1| - 8.4e-05 22.1 0.1 0.00015 21.4 0.0 1.3 1 0 0 1 1 1 1 MarR family RPA_C PF08784.6 gi|344211362|ref|YP_004795682.1| - 0.00058 20.2 0.0 0.0023 18.3 0.0 1.9 2 0 0 2 2 2 1 Replication protein A C terminal HTH_23 PF13384.1 gi|344211362|ref|YP_004795682.1| - 0.00072 19.1 0.1 0.0022 17.5 0.1 1.9 2 0 0 2 2 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|344211362|ref|YP_004795682.1| - 0.0015 18.1 0.1 0.0032 17.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|344211362|ref|YP_004795682.1| - 0.0015 18.1 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.6 gi|344211362|ref|YP_004795682.1| - 0.002 17.7 0.0 0.0053 16.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF742) FaeA PF04703.7 gi|344211362|ref|YP_004795682.1| - 0.0022 18.0 0.1 0.056 13.6 0.0 2.3 2 0 0 2 2 2 1 FaeA-like protein HTH_24 PF13412.1 gi|344211362|ref|YP_004795682.1| - 0.0035 16.6 0.1 0.0059 15.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|344211362|ref|YP_004795682.1| - 0.0042 16.6 0.1 0.0087 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|344211362|ref|YP_004795682.1| - 0.0061 16.5 0.1 0.012 15.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.6 gi|344211362|ref|YP_004795682.1| - 0.041 13.5 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor FeoC PF09012.5 gi|344211362|ref|YP_004795682.1| - 0.042 13.5 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DDRGK PF09756.4 gi|344211362|ref|YP_004795682.1| - 0.046 13.1 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HTH_Mga PF08280.6 gi|344211362|ref|YP_004795682.1| - 0.051 13.3 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|344211362|ref|YP_004795682.1| - 0.057 13.3 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|344211362|ref|YP_004795682.1| - 0.064 13.4 0.3 0.19 11.9 0.2 1.9 1 1 1 2 2 2 0 Winged helix-turn helix Sigma70_r4 PF04545.11 gi|344211362|ref|YP_004795682.1| - 0.065 12.5 1.8 0.066 12.5 0.1 1.9 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_Tnp_1 PF01527.15 gi|344211362|ref|YP_004795682.1| - 0.066 13.1 0.0 0.21 11.5 0.0 1.9 1 0 0 1 1 1 0 Transposase Rrf2 PF02082.15 gi|344211362|ref|YP_004795682.1| - 0.067 13.3 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.8 gi|344211362|ref|YP_004795682.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain EAP30 PF04157.11 gi|344211362|ref|YP_004795682.1| - 0.11 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_Tnp_Tc3_2 PF01498.13 gi|344211362|ref|YP_004795682.1| - 0.15 12.1 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Transposase PfkB PF00294.19 gi|344211363|ref|YP_004795683.1| - 1.1e-38 133.0 4.0 1.4e-38 132.7 2.7 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|344211363|ref|YP_004795683.1| - 0.044 12.9 0.0 0.068 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|344211364|ref|YP_004795684.1| - 0.05 12.7 2.8 0.078 12.0 1.9 1.2 1 0 0 1 1 1 0 pfkB family carbohydrate kinase DeoC PF01791.4 gi|344211365|ref|YP_004795685.1| - 2.7e-31 108.6 0.0 3e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|344211365|ref|YP_004795685.1| - 0.0082 15.4 0.1 0.018 14.3 0.0 1.7 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel RHH_1 PF01402.16 gi|344211366|ref|YP_004795686.1| - 0.049 13.5 0.3 0.35 10.8 0.1 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family SPATA25 PF15218.1 gi|344211367|ref|YP_004795687.1| - 0.046 13.1 1.6 0.069 12.5 1.1 1.3 1 0 0 1 1 1 0 Spermatogenesis-associated protein 25 FIST PF08495.5 gi|344211368|ref|YP_004795688.1| - 1.3e-47 161.4 0.9 9.2e-46 155.4 0.3 2.3 2 0 0 2 2 2 2 FIST N domain FIST_C PF10442.4 gi|344211368|ref|YP_004795688.1| - 3.7e-42 143.5 0.1 8.2e-41 139.1 0.0 2.2 2 0 0 2 2 2 1 FIST C domain OsmC PF02566.14 gi|344211369|ref|YP_004795689.1| - 9.9e-14 51.3 0.0 1.5e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein SbcD_C PF12320.3 gi|344211369|ref|YP_004795689.1| - 0.0047 16.9 0.4 0.013 15.5 0.3 1.8 1 1 0 1 1 1 1 Type 5 capsule protein repressor C-terminal domain UbiA PF01040.13 gi|344211371|ref|YP_004795691.1| - 6.5e-16 58.3 20.2 8.1e-16 58.0 14.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DnaJ PF00226.26 gi|344211372|ref|YP_004795692.1| - 1.2e-19 69.7 0.0 1.9e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain DUF1684 PF07920.6 gi|344211373|ref|YP_004795693.1| - 5.5e-53 178.6 0.0 7.3e-53 178.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Abi PF02517.11 gi|344211374|ref|YP_004795694.1| - 8.2e-15 54.7 0.1 8.2e-15 54.7 0.1 2.5 3 0 0 3 3 3 1 CAAX protease self-immunity Spore_III_AF PF09581.5 gi|344211374|ref|YP_004795694.1| - 0.16 11.8 0.1 0.33 10.7 0.1 1.4 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Phage_Coat_Gp8 PF05371.7 gi|344211374|ref|YP_004795694.1| - 3.3 7.3 4.9 2.3 7.8 1.9 1.9 1 1 1 2 2 2 0 Phage major coat protein, Gp8 PAS_9 PF13426.1 gi|344211375|ref|YP_004795695.1| - 7.5e-33 113.0 0.0 1.2e-15 57.6 0.0 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|344211375|ref|YP_004795695.1| - 2.4e-21 75.8 0.0 5.5e-21 74.6 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|344211375|ref|YP_004795695.1| - 1.1e-18 67.0 0.1 4.4e-08 32.9 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|344211375|ref|YP_004795695.1| - 3.1e-16 59.3 0.4 6.5e-08 32.5 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|344211375|ref|YP_004795695.1| - 1.5e-08 34.2 0.0 0.0061 16.3 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|344211375|ref|YP_004795695.1| - 8.3e-07 29.2 0.1 3e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.6 gi|344211375|ref|YP_004795695.1| - 1.4e-05 25.0 0.1 0.0036 17.3 0.0 3.1 2 1 0 2 2 2 1 PAS fold GAF_3 PF13492.1 gi|344211375|ref|YP_004795695.1| - 1.8e-05 24.7 0.0 4e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.2 gi|344211375|ref|YP_004795695.1| - 0.00013 21.9 0.1 1.3 9.1 0.0 3.4 2 2 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|344211375|ref|YP_004795695.1| - 0.0018 18.2 0.0 0.23 11.4 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|344211375|ref|YP_004795695.1| - 0.0057 16.9 0.0 3.5 7.9 0.0 2.6 2 0 0 2 2 2 1 PAS domain GAF_2 PF13185.1 gi|344211375|ref|YP_004795695.1| - 0.071 13.5 0.0 0.22 12.0 0.0 1.9 1 0 0 1 1 1 0 GAF domain OKR_DC_1_N PF03709.10 gi|344211375|ref|YP_004795695.1| - 0.072 13.1 0.0 0.2 11.7 0.0 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Caudo_TAP PF02413.12 gi|344211375|ref|YP_004795695.1| - 0.21 11.7 2.1 4.6 7.4 0.0 3.3 3 1 1 4 4 4 0 Caudovirales tail fibre assembly protein DctM PF06808.7 gi|344211376|ref|YP_004795696.1| - 2.4e-60 204.2 38.6 2.4e-60 204.2 26.8 1.6 1 1 0 1 1 1 1 DctM-like transporters DAO PF01266.19 gi|344211378|ref|YP_004795698.1| - 5.7e-13 48.5 0.0 9.3e-06 24.7 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344211378|ref|YP_004795698.1| - 3.2e-09 36.3 1.1 0.00014 21.0 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|344211378|ref|YP_004795698.1| - 1.1e-08 35.2 0.5 2e-07 31.1 0.3 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|344211378|ref|YP_004795698.1| - 1.4e-06 27.0 1.8 0.001 17.6 1.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Trp_halogenase PF04820.9 gi|344211378|ref|YP_004795698.1| - 1.2e-05 24.1 1.5 0.006 15.2 0.0 2.1 1 1 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|344211378|ref|YP_004795698.1| - 2.6e-05 23.4 3.2 0.00011 21.4 2.2 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|344211378|ref|YP_004795698.1| - 0.00015 21.6 0.4 0.27 10.9 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|344211378|ref|YP_004795698.1| - 0.00024 20.1 2.2 0.0022 16.9 0.7 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|344211378|ref|YP_004795698.1| - 0.00045 20.1 0.3 0.00045 20.1 0.2 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|344211378|ref|YP_004795698.1| - 0.00058 18.8 0.8 0.37 9.6 0.5 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|344211378|ref|YP_004795698.1| - 0.00069 18.5 3.3 0.00069 18.5 2.3 1.9 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|344211378|ref|YP_004795698.1| - 0.0094 15.0 0.2 0.015 14.3 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|344211378|ref|YP_004795698.1| - 0.026 14.9 0.2 0.41 11.0 0.4 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344211378|ref|YP_004795698.1| - 0.27 11.2 2.1 2.9 7.9 1.4 2.2 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Response_reg PF00072.19 gi|344211379|ref|YP_004795699.1| - 2.8e-11 43.4 0.6 4.3e-11 42.7 0.1 1.6 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|344211379|ref|YP_004795699.1| - 0.049 13.6 5.8 0.13 12.3 4.0 1.7 1 0 0 1 1 1 0 HalX domain DUF1127 PF06568.6 gi|344211379|ref|YP_004795699.1| - 0.065 12.6 0.4 0.15 11.4 0.3 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1127) 2-Hacid_dh_C PF02826.14 gi|344211380|ref|YP_004795700.1| - 4.6e-51 172.4 0.0 6.4e-51 172.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|344211380|ref|YP_004795700.1| - 1.6e-09 37.3 0.0 2e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|344211380|ref|YP_004795700.1| - 0.0042 16.9 0.0 0.0072 16.1 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|344211380|ref|YP_004795700.1| - 0.04 14.3 0.0 0.083 13.3 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Repressor_Mnt PF11423.3 gi|344211380|ref|YP_004795700.1| - 0.067 12.5 0.1 0.2 11.0 0.1 1.8 1 0 0 1 1 1 0 Regulatory protein Mnt Shikimate_DH PF01488.15 gi|344211380|ref|YP_004795700.1| - 0.14 12.2 0.0 0.89 9.6 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Semialdhyde_dhC PF02774.13 gi|344211381|ref|YP_004795701.1| - 8.9e-32 110.4 0.0 1.3e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|344211381|ref|YP_004795701.1| - 3.8e-30 104.6 0.0 7.9e-30 103.6 0.0 1.6 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DXP_reductoisom PF02670.11 gi|344211381|ref|YP_004795701.1| - 0.017 15.6 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase DapB_N PF01113.15 gi|344211381|ref|YP_004795701.1| - 0.08 12.8 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Phage_Coat_A PF05357.8 gi|344211381|ref|YP_004795701.1| - 0.15 11.6 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 Phage Coat Protein A AAA_12 PF13087.1 gi|344211383|ref|YP_004795703.1| - 3.7e-44 150.5 0.0 7.3e-44 149.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|344211383|ref|YP_004795703.1| - 2.2e-32 112.5 0.2 2.9e-16 59.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|344211383|ref|YP_004795703.1| - 1.4e-15 56.8 4.4 2.2e-12 46.5 0.1 3.4 3 0 0 3 3 3 2 Part of AAA domain AAA_30 PF13604.1 gi|344211383|ref|YP_004795703.1| - 3.1e-14 53.0 0.5 7.1e-14 51.8 0.3 1.6 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|344211383|ref|YP_004795703.1| - 1.9e-06 27.5 0.0 0.11 11.9 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|344211383|ref|YP_004795703.1| - 0.00024 21.1 0.1 0.0013 18.7 0.0 2.1 2 1 0 2 2 1 1 AAA ATPase domain Helicase_RecD PF05127.9 gi|344211383|ref|YP_004795703.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 Helicase AAA_25 PF13481.1 gi|344211383|ref|YP_004795703.1| - 0.0019 17.6 0.1 0.0071 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|344211383|ref|YP_004795703.1| - 0.0023 17.8 0.0 0.0074 16.1 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|344211383|ref|YP_004795703.1| - 0.0027 17.8 0.0 0.0076 16.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|344211383|ref|YP_004795703.1| - 0.013 14.5 0.0 0.083 11.8 0.0 2.2 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.1 gi|344211383|ref|YP_004795703.1| - 0.023 14.8 0.0 0.066 13.3 0.0 1.8 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain PhoH PF02562.11 gi|344211383|ref|YP_004795703.1| - 0.041 13.1 0.0 0.43 9.7 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_17 PF13207.1 gi|344211383|ref|YP_004795703.1| - 0.066 14.0 0.1 0.27 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|344211383|ref|YP_004795703.1| - 0.068 12.5 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|344211383|ref|YP_004795703.1| - 0.07 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|344211383|ref|YP_004795703.1| - 0.12 10.9 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|344211383|ref|YP_004795703.1| - 0.14 11.0 0.0 0.54 9.1 0.0 1.8 2 0 0 2 2 2 0 PIF1-like helicase UvrD-helicase PF00580.16 gi|344211383|ref|YP_004795703.1| - 0.35 10.1 0.0 0.54 9.4 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain tRNA-synt_1b PF00579.20 gi|344211384|ref|YP_004795704.1| - 2.4e-58 197.5 0.0 2.9e-58 197.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Methyltransf_11 PF08241.7 gi|344211385|ref|YP_004795705.1| - 2.2e-19 69.7 0.1 3.9e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211385|ref|YP_004795705.1| - 4.4e-12 46.5 0.3 1e-11 45.4 0.2 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344211385|ref|YP_004795705.1| - 1.3e-11 44.7 0.1 2.4e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344211385|ref|YP_004795705.1| - 2.4e-11 43.5 0.0 3.1e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211385|ref|YP_004795705.1| - 3.6e-10 40.2 0.1 7e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344211385|ref|YP_004795705.1| - 5.7e-10 38.9 0.0 7.6e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344211385|ref|YP_004795705.1| - 4.7e-07 29.8 3.1 8.3e-07 29.0 2.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|344211385|ref|YP_004795705.1| - 1.9e-05 24.1 0.0 2.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|344211385|ref|YP_004795705.1| - 0.011 14.4 0.0 0.014 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_8 PF05148.10 gi|344211385|ref|YP_004795705.1| - 0.014 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase MetW PF07021.7 gi|344211385|ref|YP_004795705.1| - 0.041 13.2 0.0 0.055 12.8 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TehB PF03848.9 gi|344211385|ref|YP_004795705.1| - 0.054 12.6 0.0 0.071 12.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.14 gi|344211385|ref|YP_004795705.1| - 0.085 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Excalibur PF05901.6 gi|344211386|ref|YP_004795706.1| - 0.19 12.1 0.9 0.25 11.7 0.6 1.3 1 0 0 1 1 1 0 Excalibur calcium-binding domain IMS PF00817.15 gi|344211387|ref|YP_004795707.1| - 2.9e-38 130.9 0.4 4.8e-38 130.2 0.3 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|344211387|ref|YP_004795707.1| - 2.1e-12 47.0 0.0 3.4e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain HHH_5 PF14520.1 gi|344211387|ref|YP_004795707.1| - 7.3e-07 29.2 0.1 2.3e-06 27.6 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|344211387|ref|YP_004795707.1| - 5.8e-06 26.0 0.0 1.2e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|344211387|ref|YP_004795707.1| - 0.0015 18.0 0.0 0.007 15.8 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF1805 PF08827.6 gi|344211387|ref|YP_004795707.1| - 0.0023 17.6 0.2 0.0094 15.7 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1805) Cdd1 PF11731.3 gi|344211387|ref|YP_004795707.1| - 0.026 14.4 0.0 0.058 13.3 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus CinA PF02464.12 gi|344211387|ref|YP_004795707.1| - 0.28 10.6 2.3 0.2 11.1 0.1 1.9 2 0 0 2 2 2 0 Competence-damaged protein Abhydrolase_6 PF12697.2 gi|344211387|ref|YP_004795707.1| - 0.52 10.1 7.1 2.1 8.1 4.9 2.0 1 1 0 1 1 1 0 Alpha/beta hydrolase family Nitroreductase PF00881.19 gi|344211389|ref|YP_004795709.1| - 3.1e-33 114.9 0.0 3.7e-33 114.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family AAA_10 PF12846.2 gi|344211390|ref|YP_004795710.1| - 1.5e-17 63.9 6.8 1.3e-09 37.9 0.0 3.6 3 1 1 4 4 4 2 AAA-like domain DUF87 PF01935.12 gi|344211390|ref|YP_004795710.1| - 3.1e-13 50.0 6.2 5.2e-13 49.3 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|344211390|ref|YP_004795710.1| - 3.7e-05 22.2 1.6 0.00079 17.8 0.0 2.5 3 0 0 3 3 3 1 Bacterial protein of unknown function (DUF853) AAA_17 PF13207.1 gi|344211390|ref|YP_004795710.1| - 6.4e-05 23.7 1.1 0.00058 20.6 0.0 2.7 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|344211390|ref|YP_004795710.1| - 0.00045 19.7 0.1 0.0076 15.7 0.0 2.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) CbiA PF01656.18 gi|344211390|ref|YP_004795710.1| - 0.0034 16.7 0.2 0.014 14.7 0.0 2.1 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.24 gi|344211390|ref|YP_004795710.1| - 0.0066 16.6 0.8 0.14 12.3 0.0 2.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|344211390|ref|YP_004795710.1| - 0.0097 14.4 5.4 0.018 13.5 3.8 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|344211390|ref|YP_004795710.1| - 0.01 16.1 0.1 0.01 16.1 0.0 2.6 3 0 0 3 3 2 0 AAA domain APS_kinase PF01583.15 gi|344211390|ref|YP_004795710.1| - 0.015 14.9 0.3 0.053 13.1 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase Spc7 PF08317.6 gi|344211390|ref|YP_004795710.1| - 0.023 13.3 2.7 0.038 12.6 1.9 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein TMF_DNA_bd PF12329.3 gi|344211390|ref|YP_004795710.1| - 0.025 14.3 8.9 0.022 14.5 4.4 2.2 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|344211390|ref|YP_004795710.1| - 0.035 13.7 8.2 0.088 12.4 5.7 1.6 1 0 0 1 1 1 0 IncA protein FtsK_SpoIIIE PF01580.13 gi|344211390|ref|YP_004795710.1| - 0.045 13.2 2.9 0.39 10.1 0.1 2.8 2 1 0 2 2 2 0 FtsK/SpoIIIE family Med9 PF07544.8 gi|344211390|ref|YP_004795710.1| - 0.074 12.7 4.3 0.18 11.5 2.9 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Fib_alpha PF08702.5 gi|344211390|ref|YP_004795710.1| - 0.11 12.6 0.6 0.25 11.4 0.4 1.6 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Atg14 PF10186.4 gi|344211390|ref|YP_004795710.1| - 0.15 10.9 1.3 0.25 10.2 0.9 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Hpr_kinase_C PF07475.7 gi|344211390|ref|YP_004795710.1| - 0.27 10.5 3.0 6 6.1 0.1 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain AAA_22 PF13401.1 gi|344211390|ref|YP_004795710.1| - 0.42 10.7 2.6 1.4 9.0 0.1 2.9 3 1 0 3 3 3 0 AAA domain Mnd1 PF03962.10 gi|344211390|ref|YP_004795710.1| - 0.43 10.2 7.1 1 9.0 4.9 1.6 1 0 0 1 1 1 0 Mnd1 family Occludin_ELL PF07303.8 gi|344211390|ref|YP_004795710.1| - 0.54 11.0 3.5 1.5 9.6 2.4 1.7 1 0 0 1 1 1 0 Occludin homology domain APG6 PF04111.7 gi|344211390|ref|YP_004795710.1| - 0.54 9.2 5.2 0.94 8.4 3.6 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|344211390|ref|YP_004795710.1| - 1.1 8.8 6.8 1.2 8.6 3.3 2.2 2 0 0 2 2 2 0 Septum formation initiator IFT57 PF10498.4 gi|344211390|ref|YP_004795710.1| - 2.3 6.8 11.2 0.023 13.4 1.0 2.6 3 0 0 3 3 3 0 Intra-flagellar transport protein 57 OAD_gamma PF04277.8 gi|344211390|ref|YP_004795710.1| - 4 7.8 5.4 16 5.9 3.8 2.1 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain AAA_23 PF13476.1 gi|344211390|ref|YP_004795710.1| - 4.6 7.5 14.5 53 4.0 10.1 2.4 1 1 0 1 1 1 0 AAA domain TIM PF00121.13 gi|344211391|ref|YP_004795711.1| - 3.7e-23 81.8 0.1 5.6e-14 51.8 0.0 2.0 1 1 1 2 2 2 2 Triosephosphate isomerase ThiG PF05690.9 gi|344211391|ref|YP_004795711.1| - 0.00011 21.3 1.0 0.00011 21.3 0.7 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.13 gi|344211391|ref|YP_004795711.1| - 0.0086 14.9 2.5 0.0086 14.9 1.7 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.16 gi|344211391|ref|YP_004795711.1| - 0.063 12.3 0.1 0.19 10.7 0.0 2.0 1 1 1 2 2 2 0 Indole-3-glycerol phosphate synthase HalX PF08663.5 gi|344211392|ref|YP_004795712.1| - 2.3e-19 69.1 8.4 5.2e-19 67.9 5.8 1.6 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|344211392|ref|YP_004795712.1| - 1.5e-10 41.1 0.2 2.3e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain Alpha-2-MRAP_C PF06401.6 gi|344211392|ref|YP_004795712.1| - 0.022 14.6 1.4 0.031 14.1 1.0 1.2 1 0 0 1 1 1 0 Alpha-2-macroglobulin RAP, C-terminal domain CorA PF01544.13 gi|344211392|ref|YP_004795712.1| - 0.031 13.3 5.6 0.039 13.0 3.9 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.1 gi|344211392|ref|YP_004795712.1| - 0.75 10.2 4.6 3.7 8.0 3.2 2.1 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) IncA PF04156.9 gi|344211392|ref|YP_004795712.1| - 6.5 6.2 7.8 9.5 5.7 5.4 1.2 1 0 0 1 1 1 0 IncA protein HTH_3 PF01381.17 gi|344211393|ref|YP_004795713.1| - 5.3e-10 38.9 1.7 7.3e-10 38.5 1.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|344211393|ref|YP_004795713.1| - 2.6e-08 33.9 0.1 4e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|344211393|ref|YP_004795713.1| - 3e-07 30.3 0.4 4.8e-07 29.7 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|344211393|ref|YP_004795713.1| - 2.1e-05 24.0 0.4 3.2e-05 23.4 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain SR-25 PF10500.4 gi|344211393|ref|YP_004795713.1| - 9.6e-05 21.9 10.5 0.00011 21.6 7.3 1.2 1 0 0 1 1 1 1 Nuclear RNA-splicing-associated protein COPR5 PF15340.1 gi|344211393|ref|YP_004795713.1| - 0.002 18.5 1.1 0.0029 17.9 0.7 1.2 1 0 0 1 1 1 1 Cooperator of PRMT5 family RAP1 PF07218.6 gi|344211393|ref|YP_004795713.1| - 0.058 11.4 5.3 0.066 11.3 3.7 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) HTH_37 PF13744.1 gi|344211393|ref|YP_004795713.1| - 0.076 12.8 0.2 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain IATP PF04568.7 gi|344211393|ref|YP_004795713.1| - 0.22 11.5 2.3 0.44 10.5 1.6 1.5 1 0 0 1 1 1 0 Mitochondrial ATPase inhibitor, IATP Macoilin PF09726.4 gi|344211393|ref|YP_004795713.1| - 1.9 6.6 8.2 2.1 6.5 5.7 1.1 1 0 0 1 1 1 0 Transmembrane protein SSP160 PF06933.6 gi|344211393|ref|YP_004795713.1| - 2.6 5.9 8.4 3.4 5.5 5.8 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 Corona_nucleoca PF00937.13 gi|344211393|ref|YP_004795713.1| - 3.4 6.5 8.6 4.2 6.2 5.9 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein DUF515 PF04415.7 gi|344211393|ref|YP_004795713.1| - 9.9 4.2 12.3 1.7 6.8 6.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF515) OrfB_IS605 PF01385.14 gi|344211394|ref|YP_004795714.1| - 2.1e-23 82.9 0.6 2.1e-23 82.9 0.5 1.6 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|344211394|ref|YP_004795714.1| - 1.2e-19 69.7 0.2 2.3e-19 68.8 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|344211394|ref|YP_004795714.1| - 0.00027 20.1 0.0 0.00053 19.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Ribosomal_L37e PF01907.14 gi|344211394|ref|YP_004795714.1| - 0.13 12.0 0.5 0.35 10.6 0.3 1.7 1 0 0 1 1 1 0 Ribosomal protein L37e IncFII_repA PF02387.10 gi|344211394|ref|YP_004795714.1| - 0.47 9.5 2.7 0.47 9.5 0.3 1.8 2 0 0 2 2 2 0 IncFII RepA protein family CDP-OH_P_transf PF01066.16 gi|344211395|ref|YP_004795715.1| - 2.1e-11 44.0 9.8 1.5e-10 41.2 6.8 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase DUF1118 PF06549.7 gi|344211395|ref|YP_004795715.1| - 0.29 11.2 5.4 0.081 13.0 0.5 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1118) AAA_18 PF13238.1 gi|344211396|ref|YP_004795716.1| - 5.2e-24 84.9 0.1 7.6e-24 84.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344211396|ref|YP_004795716.1| - 7.4e-17 62.2 0.6 1.1e-16 61.6 0.4 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344211396|ref|YP_004795716.1| - 7.2e-07 29.1 0.6 0.012 15.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|344211396|ref|YP_004795716.1| - 1.9e-05 24.6 3.6 0.00043 20.2 0.2 2.2 1 1 0 2 2 2 1 AAA domain dNK PF01712.14 gi|344211396|ref|YP_004795716.1| - 0.0014 18.5 0.0 0.0026 17.6 0.0 1.4 2 0 0 2 2 2 1 Deoxynucleoside kinase CoaE PF01121.15 gi|344211396|ref|YP_004795716.1| - 0.0052 16.1 0.0 3.2 7.0 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase ADK PF00406.17 gi|344211396|ref|YP_004795716.1| - 0.0053 16.6 0.0 0.49 10.2 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase AAA_22 PF13401.1 gi|344211396|ref|YP_004795716.1| - 0.0093 16.1 0.0 0.012 15.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|344211396|ref|YP_004795716.1| - 0.01 15.5 3.3 0.016 14.9 1.0 2.1 2 0 0 2 2 2 0 Part of AAA domain NTPase_1 PF03266.10 gi|344211396|ref|YP_004795716.1| - 0.012 15.3 0.7 0.04 13.6 0.2 1.8 1 1 0 2 2 2 0 NTPase SKI PF01202.17 gi|344211396|ref|YP_004795716.1| - 0.014 15.2 0.0 0.061 13.1 0.0 1.9 2 0 0 2 2 2 0 Shikimate kinase ArgK PF03308.11 gi|344211396|ref|YP_004795716.1| - 0.019 13.7 0.1 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Thymidylate_kin PF02223.12 gi|344211396|ref|YP_004795716.1| - 0.044 13.1 0.4 5.6 6.2 0.1 2.2 1 1 1 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|344211396|ref|YP_004795716.1| - 0.071 12.3 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|344211396|ref|YP_004795716.1| - 0.1 12.6 0.2 0.31 11.0 0.0 1.8 1 1 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|344211396|ref|YP_004795716.1| - 0.11 12.1 0.8 0.27 10.9 0.4 2.0 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|344211396|ref|YP_004795716.1| - 0.14 12.3 0.9 0.27 11.4 0.7 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Aminotran_1_2 PF00155.16 gi|344211397|ref|YP_004795717.1| - 1.2e-62 212.0 0.0 1.3e-62 211.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|344211397|ref|YP_004795717.1| - 3.3e-05 22.7 0.0 5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|344211397|ref|YP_004795717.1| - 0.0038 15.5 0.0 0.0062 14.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DUF3798 PF12683.2 gi|344211397|ref|YP_004795717.1| - 0.016 14.3 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) CheX PF13690.1 gi|344211398|ref|YP_004795718.1| - 8.9e-09 35.1 0.1 1.7e-08 34.1 0.1 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.7 gi|344211398|ref|YP_004795718.1| - 1.5e-08 34.2 0.5 1.5e-08 34.2 0.4 2.1 3 0 0 3 3 3 1 CheC-like family CopD PF05425.8 gi|344211399|ref|YP_004795719.1| - 3.6e-07 30.3 3.4 3.6e-07 30.3 2.4 1.9 1 1 1 2 2 2 1 Copper resistance protein D 60KD_IMP PF02096.15 gi|344211399|ref|YP_004795719.1| - 0.14 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 60Kd inner membrane protein DUF457 PF04307.9 gi|344211400|ref|YP_004795720.1| - 6e-09 35.4 9.6 8.7e-09 34.8 6.7 1.4 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) GMC_oxred_C PF05199.8 gi|344211401|ref|YP_004795721.1| - 2.1e-22 79.9 0.7 7.4e-22 78.1 0.5 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|344211401|ref|YP_004795721.1| - 3.6e-18 65.7 0.0 8.5e-18 64.5 0.0 1.6 1 1 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|344211401|ref|YP_004795721.1| - 2.5e-10 39.8 0.1 1.8e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344211401|ref|YP_004795721.1| - 6.6e-09 35.1 1.4 0.0012 17.7 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|344211401|ref|YP_004795721.1| - 1.6e-06 27.4 0.5 9.5e-05 21.6 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|344211401|ref|YP_004795721.1| - 8.9e-06 25.6 0.0 2.4e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344211401|ref|YP_004795721.1| - 9.7e-06 24.3 0.1 0.00012 20.7 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|344211401|ref|YP_004795721.1| - 0.00052 19.9 0.0 0.0091 15.8 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|344211401|ref|YP_004795721.1| - 0.00083 18.3 0.1 0.0013 17.7 0.1 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|344211401|ref|YP_004795721.1| - 0.005 17.2 0.0 0.033 14.6 0.0 2.4 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344211401|ref|YP_004795721.1| - 0.0053 16.8 0.0 0.024 14.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|344211401|ref|YP_004795721.1| - 0.0076 15.3 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Thi4 family ApbA PF02558.11 gi|344211401|ref|YP_004795721.1| - 0.014 14.8 0.1 0.044 13.2 0.0 1.8 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Fer4_7 PF12838.2 gi|344211401|ref|YP_004795721.1| - 0.015 15.6 0.6 0.034 14.5 0.4 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain 3HCDH_N PF02737.13 gi|344211401|ref|YP_004795721.1| - 0.051 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|344211401|ref|YP_004795721.1| - 0.08 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain GIDA PF01134.17 gi|344211401|ref|YP_004795721.1| - 0.11 11.2 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|344211401|ref|YP_004795721.1| - 0.12 11.4 4.8 0.028 13.4 1.1 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer4_3 PF12798.2 gi|344211401|ref|YP_004795721.1| - 1.1 10.0 3.5 2.7 8.7 2.4 1.7 1 0 0 1 1 1 0 4Fe-4S binding domain MttA_Hcf106 PF02416.11 gi|344211402|ref|YP_004795722.1| - 3.5e-15 54.8 0.0 3.7e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 mttA/Hcf106 family AhpC-TSA PF00578.16 gi|344211404|ref|YP_004795724.1| - 1.5e-33 115.1 0.0 1.8e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344211404|ref|YP_004795724.1| - 7e-23 80.7 0.0 8.1e-23 80.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|344211404|ref|YP_004795724.1| - 0.00061 19.2 0.0 0.0008 18.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|344211404|ref|YP_004795724.1| - 0.00091 19.1 0.0 0.038 13.8 0.0 2.1 2 0 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF3103 PF11301.3 gi|344211404|ref|YP_004795724.1| - 0.13 10.9 0.1 0.18 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3103) HD PF01966.17 gi|344211405|ref|YP_004795725.1| - 1.8e-08 34.4 2.9 2.3e-08 34.0 1.4 1.6 2 0 0 2 2 2 1 HD domain zinc_ribbon_2 PF13240.1 gi|344211407|ref|YP_004795727.1| - 9e-06 25.0 2.3 1.1e-05 24.6 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|344211407|ref|YP_004795727.1| - 2.1e-05 23.5 1.6 3.1e-05 23.0 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|344211407|ref|YP_004795727.1| - 0.0001 22.0 2.1 0.00011 21.8 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|344211407|ref|YP_004795727.1| - 0.00013 21.7 1.6 0.00013 21.7 1.1 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|344211407|ref|YP_004795727.1| - 0.0011 18.5 1.7 0.0012 18.4 1.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|344211407|ref|YP_004795727.1| - 0.0022 17.6 0.7 0.0026 17.4 0.5 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|344211407|ref|YP_004795727.1| - 0.011 15.3 1.2 0.012 15.2 0.8 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 gi|344211407|ref|YP_004795727.1| - 0.016 14.9 1.7 0.019 14.6 1.2 1.1 1 0 0 1 1 1 0 zinc-RING finger domain NOB1_Zn_bind PF08772.6 gi|344211407|ref|YP_004795727.1| - 0.029 14.2 0.8 0.031 14.1 0.6 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like UPF0547 PF10571.4 gi|344211407|ref|YP_004795727.1| - 0.038 13.6 2.3 0.064 12.9 1.6 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|344211407|ref|YP_004795727.1| - 0.038 13.7 1.3 0.044 13.5 0.9 1.2 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Zn-ribbon_8 PF09723.5 gi|344211407|ref|YP_004795727.1| - 0.04 13.8 5.1 0.87 9.5 3.5 2.0 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|344211407|ref|YP_004795727.1| - 0.041 13.2 3.3 0.38 10.1 2.4 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding zf-P11 PF03854.9 gi|344211407|ref|YP_004795727.1| - 0.045 13.2 0.1 0.049 13.1 0.1 1.1 1 0 0 1 1 1 0 P-11 zinc finger FdhE PF04216.7 gi|344211407|ref|YP_004795727.1| - 0.049 13.3 1.1 0.049 13.3 0.7 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C3HC4_2 PF13923.1 gi|344211407|ref|YP_004795727.1| - 0.051 13.6 1.8 0.059 13.3 1.3 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-FPG_IleRS PF06827.9 gi|344211407|ref|YP_004795727.1| - 0.052 13.1 5.0 0.55 9.9 3.7 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS TFIIS_C PF01096.13 gi|344211407|ref|YP_004795727.1| - 0.053 13.1 0.9 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DnaJ_CXXCXGXG PF00684.14 gi|344211407|ref|YP_004795727.1| - 0.071 13.1 3.3 0.081 12.9 2.3 1.1 1 0 0 1 1 1 0 DnaJ central domain RNA_POL_M_15KD PF02150.11 gi|344211407|ref|YP_004795727.1| - 0.072 12.7 2.2 0.37 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF4215 PF13948.1 gi|344211407|ref|YP_004795727.1| - 0.086 13.0 0.6 0.092 12.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4215) DUF2688 PF10892.3 gi|344211407|ref|YP_004795727.1| - 0.096 12.3 2.2 0.16 11.6 1.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-RING_3 PF14369.1 gi|344211407|ref|YP_004795727.1| - 0.1 12.6 3.8 0.24 11.4 2.7 1.6 1 1 1 2 2 2 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|344211407|ref|YP_004795727.1| - 0.11 12.1 5.9 1.9 8.1 0.5 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain RE_MamI PF09567.5 gi|344211407|ref|YP_004795727.1| - 0.11 11.5 0.2 0.11 11.4 0.1 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease Nudix_N_2 PF14803.1 gi|344211407|ref|YP_004795727.1| - 0.13 11.9 2.5 7.7 6.3 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Elf1 PF05129.8 gi|344211407|ref|YP_004795727.1| - 0.13 11.9 2.0 0.55 9.9 0.1 1.9 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-RING_4 PF14570.1 gi|344211407|ref|YP_004795727.1| - 0.13 11.8 0.6 0.16 11.6 0.5 1.1 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain YhfH PF14149.1 gi|344211407|ref|YP_004795727.1| - 0.14 11.9 3.4 2.5 7.9 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein NRDD PF13597.1 gi|344211407|ref|YP_004795727.1| - 0.2 9.6 1.6 0.21 9.6 1.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Lar_restr_allev PF14354.1 gi|344211407|ref|YP_004795727.1| - 0.2 11.9 2.7 1.6 9.1 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF2072 PF09845.4 gi|344211407|ref|YP_004795727.1| - 0.29 11.0 1.4 0.29 11.0 1.0 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zinc_ribbon_5 PF13719.1 gi|344211407|ref|YP_004795727.1| - 0.38 10.3 3.6 4.4 6.9 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344211407|ref|YP_004795727.1| - 0.42 10.3 3.6 4.1 7.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Opy2 PF09463.5 gi|344211407|ref|YP_004795727.1| - 0.46 10.6 5.3 12 6.1 4.1 2.0 1 1 1 2 2 2 0 Opy2 protein Zn_Tnp_IS1595 PF12760.2 gi|344211407|ref|YP_004795727.1| - 0.46 10.3 6.0 2.6 7.9 0.2 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|344211407|ref|YP_004795727.1| - 0.46 10.4 4.2 1.3 9.0 2.9 1.8 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.14 gi|344211407|ref|YP_004795727.1| - 0.57 9.7 3.0 0.51 9.8 0.2 1.9 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-Mss51 PF13824.1 gi|344211407|ref|YP_004795727.1| - 0.85 9.5 3.7 2.2 8.1 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.8 gi|344211407|ref|YP_004795727.1| - 0.94 8.9 4.2 2.9 7.4 2.8 1.7 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_S27 PF01599.14 gi|344211407|ref|YP_004795727.1| - 1 9.1 5.1 4.9 7.0 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein S27a DUF678 PF05077.7 gi|344211407|ref|YP_004795727.1| - 1.2 9.1 4.1 12 5.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF678) DNA_ligase_ZBD PF03119.11 gi|344211407|ref|YP_004795727.1| - 2.4 7.9 5.5 1.1 9.0 1.1 2.1 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|344211407|ref|YP_004795727.1| - 2.9 7.9 5.4 5.7 7.0 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prim_Zn_Ribbon PF08273.7 gi|344211407|ref|YP_004795727.1| - 3.4 7.8 6.4 7.4 6.7 1.0 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-IS66 PF13005.2 gi|344211407|ref|YP_004795727.1| - 8.3 6.4 7.7 8.8 6.3 0.5 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 tRNA_SAD PF07973.9 gi|344211408|ref|YP_004795728.1| - 1.1e-13 50.8 0.2 1.8e-13 50.0 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|344211408|ref|YP_004795728.1| - 2.6e-10 39.2 0.1 3.5e-10 38.8 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.14 gi|344211408|ref|YP_004795728.1| - 7.2e-07 28.8 4.5 2.7e-06 26.9 3.1 2.0 1 0 0 1 1 1 1 DHHA1 domain CP12 PF02672.10 gi|344211408|ref|YP_004795728.1| - 0.053 13.9 0.3 1.3 9.5 0.3 2.3 2 0 0 2 2 2 0 CP12 domain EamA PF00892.15 gi|344211409|ref|YP_004795729.1| - 7.7e-31 106.7 25.5 1.8e-15 57.0 6.4 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|344211409|ref|YP_004795729.1| - 0.00016 21.3 17.2 0.011 15.4 5.2 2.6 2 1 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|344211409|ref|YP_004795729.1| - 0.00076 19.6 5.2 0.00076 19.6 3.6 3.8 2 2 2 4 4 4 1 Multidrug resistance efflux transporter SurE PF01975.12 gi|344211410|ref|YP_004795730.1| - 2.6e-44 150.8 0.3 3.3e-44 150.5 0.2 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_12 PF08242.7 gi|344211411|ref|YP_004795731.1| - 2.6e-07 31.0 0.1 7.6e-07 29.5 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344211411|ref|YP_004795731.1| - 1.3e-06 28.1 0.0 2.9e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211411|ref|YP_004795731.1| - 4e-05 24.1 1.0 8.9e-05 23.0 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain Rsm22 PF09243.5 gi|344211411|ref|YP_004795731.1| - 0.0021 17.1 0.0 0.0041 16.1 0.0 1.4 1 1 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_31 PF13847.1 gi|344211411|ref|YP_004795731.1| - 0.058 12.9 0.0 4.3 6.9 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344211411|ref|YP_004795731.1| - 0.14 12.5 0.0 0.44 10.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain PDH PF02153.12 gi|344211412|ref|YP_004795732.1| - 1.2e-15 57.1 2.2 1.1e-14 53.9 1.5 1.9 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|344211412|ref|YP_004795732.1| - 6.6e-06 26.4 4.3 1.1e-05 25.7 0.6 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|344211412|ref|YP_004795732.1| - 0.0001 22.7 0.8 0.0001 22.7 0.6 2.2 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|344211412|ref|YP_004795732.1| - 0.00025 20.9 1.0 0.00025 20.9 0.7 2.0 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|344211412|ref|YP_004795732.1| - 0.0061 16.2 1.5 0.0061 16.2 1.1 2.4 1 1 2 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|344211412|ref|YP_004795732.1| - 0.007 15.5 0.1 0.014 14.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|344211412|ref|YP_004795732.1| - 0.03 13.7 0.4 0.14 11.6 0.3 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|344211412|ref|YP_004795732.1| - 0.29 11.1 2.2 1.1 9.3 0.5 2.3 1 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|344211412|ref|YP_004795732.1| - 0.45 9.8 3.9 0.14 11.5 0.2 2.0 2 1 1 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain Saccharop_dh PF03435.13 gi|344211412|ref|YP_004795732.1| - 0.68 8.8 4.2 0.15 10.9 0.2 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase ThiF PF00899.16 gi|344211412|ref|YP_004795732.1| - 0.72 9.6 3.3 1.3 8.8 0.2 2.7 2 1 1 3 3 3 0 ThiF family Senescence PF06911.7 gi|344211412|ref|YP_004795732.1| - 1.8 8.2 5.8 1.6 8.3 0.5 3.1 3 1 0 3 3 3 0 Senescence-associated protein CoA_binding PF02629.14 gi|344211412|ref|YP_004795732.1| - 2.7 8.5 7.9 0.39 11.2 0.7 2.8 2 1 1 3 3 3 0 CoA binding domain FAA_hydrolase PF01557.13 gi|344211413|ref|YP_004795733.1| - 5.1e-65 218.9 0.1 8.4e-65 218.2 0.0 1.3 2 0 0 2 2 2 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|344211413|ref|YP_004795733.1| - 0.088 13.2 0.1 0.29 11.5 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) Copper-bind PF00127.15 gi|344211414|ref|YP_004795734.1| - 1.2e-22 79.9 0.0 7.9e-13 48.4 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_3 PF07732.10 gi|344211414|ref|YP_004795734.1| - 0.13 11.9 2.0 4.2 7.1 0.3 2.3 2 0 0 2 2 2 0 Multicopper oxidase HTH_20 PF12840.2 gi|344211415|ref|YP_004795735.1| - 3e-13 49.3 0.1 4.1e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|344211415|ref|YP_004795735.1| - 0.00046 19.8 0.0 0.00065 19.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344211415|ref|YP_004795735.1| - 0.00084 18.9 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|344211415|ref|YP_004795735.1| - 0.00088 18.8 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF742 PF05331.6 gi|344211415|ref|YP_004795735.1| - 0.11 12.0 0.1 0.14 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Rio2_N PF09202.6 gi|344211415|ref|YP_004795735.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal UPF0233 PF06781.7 gi|344211416|ref|YP_004795736.1| - 0.3 10.7 1.6 3.9 7.1 0.2 2.2 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0233) DUF3082 PF11282.3 gi|344211416|ref|YP_004795736.1| - 5.7 7.0 10.1 16 5.6 2.6 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3082) DUF202 PF02656.10 gi|344211416|ref|YP_004795736.1| - 9.2 6.5 8.4 3.9 7.7 3.5 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Copper-bind PF00127.15 gi|344211417|ref|YP_004795737.1| - 3e-17 62.6 0.1 1e-16 60.9 0.1 1.9 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|344211417|ref|YP_004795737.1| - 0.00033 20.4 1.1 0.00033 20.4 0.8 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cu-oxidase_3 PF07732.10 gi|344211417|ref|YP_004795737.1| - 0.071 12.8 0.9 0.14 11.8 0.1 1.9 2 1 0 2 2 2 0 Multicopper oxidase DPRP PF04244.8 gi|344211418|ref|YP_004795738.1| - 1.1e-62 211.4 0.0 1.9e-62 210.7 0.0 1.4 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|344211418|ref|YP_004795738.1| - 7.1e-07 28.7 0.0 1.2e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase ABC1 PF03109.11 gi|344211419|ref|YP_004795739.1| - 4.5e-26 91.1 0.0 1.2e-25 89.8 0.0 1.7 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|344211419|ref|YP_004795739.1| - 7e-05 22.6 0.8 0.00055 19.7 0.5 2.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family E1-E2_ATPase PF00122.15 gi|344211420|ref|YP_004795740.1| - 6.1e-53 179.2 0.9 1.2e-52 178.3 0.6 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|344211420|ref|YP_004795740.1| - 4e-48 164.6 8.8 6.2e-48 164.0 5.3 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|344211420|ref|YP_004795740.1| - 2.2e-25 88.5 0.1 6.7e-13 48.5 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|344211420|ref|YP_004795740.1| - 2.4e-19 70.2 0.1 1.1e-18 68.1 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344211420|ref|YP_004795740.1| - 6.3e-06 25.9 0.7 0.0062 16.1 0.9 2.5 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HTH_24 PF13412.1 gi|344211421|ref|YP_004795741.1| - 5.7e-16 57.6 0.0 9.7e-16 56.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344211421|ref|YP_004795741.1| - 2.8e-15 55.5 3.0 2.8e-15 55.5 2.1 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|344211421|ref|YP_004795741.1| - 3.7e-09 36.1 0.3 2.1e-07 30.5 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|344211421|ref|YP_004795741.1| - 2.6e-05 23.8 0.0 4e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344211421|ref|YP_004795741.1| - 4.1e-05 23.1 0.0 8.1e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|344211421|ref|YP_004795741.1| - 4.7e-05 22.9 0.0 0.00014 21.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|344211421|ref|YP_004795741.1| - 7e-05 22.5 0.0 0.00016 21.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|344211421|ref|YP_004795741.1| - 0.00011 22.4 0.3 0.00053 20.2 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Ta0938 PF11494.3 gi|344211421|ref|YP_004795741.1| - 0.00021 21.3 0.7 0.00033 20.7 0.5 1.3 1 0 0 1 1 1 1 Ta0938 HTH_Tnp_ISL3 PF13542.1 gi|344211421|ref|YP_004795741.1| - 0.0011 18.0 0.1 0.0048 16.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|344211421|ref|YP_004795741.1| - 0.0015 18.0 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|344211421|ref|YP_004795741.1| - 0.0019 18.1 0.0 0.006 16.5 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain YHS PF04945.8 gi|344211421|ref|YP_004795741.1| - 0.0059 16.4 1.9 0.01 15.6 1.3 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|344211421|ref|YP_004795741.1| - 0.027 14.6 2.7 0.044 13.9 1.9 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain DUF2250 PF10007.4 gi|344211421|ref|YP_004795741.1| - 0.033 14.0 0.0 0.1 12.4 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) ATPase-cat_bd PF12156.3 gi|344211421|ref|YP_004795741.1| - 0.045 14.2 2.4 0.079 13.4 1.6 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase FeoA PF04023.9 gi|344211421|ref|YP_004795741.1| - 0.1 12.5 1.1 0.2 11.6 0.4 1.8 2 1 0 2 2 2 0 FeoA domain HTH_23 PF13384.1 gi|344211421|ref|YP_004795741.1| - 0.11 12.2 0.0 0.32 10.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain DUF4423 PF14394.1 gi|344211421|ref|YP_004795741.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Shisa PF13908.1 gi|344211421|ref|YP_004795741.1| - 0.85 9.7 3.9 1.2 9.2 2.7 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator TroA PF01297.12 gi|344211422|ref|YP_004795742.1| - 6.5e-43 146.8 0.0 8.2e-43 146.4 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family TAT_signal PF10518.4 gi|344211422|ref|YP_004795742.1| - 0.028 14.4 3.9 0.056 13.4 2.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|344211423|ref|YP_004795743.1| - 8.1e-30 103.9 0.0 1.3e-29 103.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211423|ref|YP_004795743.1| - 8.9e-11 42.2 0.0 3.3e-05 24.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344211423|ref|YP_004795743.1| - 3e-05 23.4 0.0 7.9e-05 22.1 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344211423|ref|YP_004795743.1| - 4.4e-05 23.5 0.3 0.00039 20.4 0.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|344211423|ref|YP_004795743.1| - 7.3e-05 22.0 0.0 0.0084 15.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|344211423|ref|YP_004795743.1| - 0.00054 19.8 0.0 0.00084 19.2 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|344211423|ref|YP_004795743.1| - 0.00088 18.7 0.0 0.0015 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain AAA_17 PF13207.1 gi|344211423|ref|YP_004795743.1| - 0.0021 18.8 0.3 0.0057 17.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344211423|ref|YP_004795743.1| - 0.0025 17.6 0.2 0.049 13.5 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|344211423|ref|YP_004795743.1| - 0.0027 17.8 0.1 0.0095 16.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344211423|ref|YP_004795743.1| - 0.0038 17.5 0.0 0.0055 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|344211423|ref|YP_004795743.1| - 0.006 16.2 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|344211423|ref|YP_004795743.1| - 0.0069 15.9 0.3 0.083 12.4 0.2 2.1 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|344211423|ref|YP_004795743.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|344211423|ref|YP_004795743.1| - 0.012 14.9 0.7 0.029 13.7 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|344211423|ref|YP_004795743.1| - 0.014 15.2 0.0 0.031 14.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain ABC_ATPase PF09818.4 gi|344211423|ref|YP_004795743.1| - 0.022 13.3 0.2 6.3 5.2 0.0 2.9 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Mg_chelatase PF01078.16 gi|344211423|ref|YP_004795743.1| - 0.023 13.8 0.0 0.12 11.5 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DUF87 PF01935.12 gi|344211423|ref|YP_004795743.1| - 0.028 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|344211423|ref|YP_004795743.1| - 0.029 13.5 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|344211423|ref|YP_004795743.1| - 0.05 13.0 0.0 0.068 12.6 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|344211423|ref|YP_004795743.1| - 0.063 13.5 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|344211423|ref|YP_004795743.1| - 0.09 12.4 0.0 0.2 11.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|344211423|ref|YP_004795743.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|344211423|ref|YP_004795743.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.6 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.1 gi|344211423|ref|YP_004795743.1| - 0.17 11.7 0.0 0.55 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|344211423|ref|YP_004795743.1| - 0.18 11.9 0.0 0.39 10.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ABC-3 PF00950.12 gi|344211424|ref|YP_004795744.1| - 1.2e-60 204.9 40.3 1.4e-60 204.7 27.9 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|344211424|ref|YP_004795744.1| - 0.00014 20.7 38.1 0.00014 20.7 26.4 1.7 1 1 0 1 1 1 1 FecCD transport family DUF2407_C PF13373.1 gi|344211424|ref|YP_004795744.1| - 0.25 11.2 2.3 0.24 11.3 0.2 2.0 2 0 0 2 2 2 0 DUF2407 C-terminal domain Lipocalin PF00061.18 gi|344211425|ref|YP_004795745.1| - 0.22 11.4 1.3 0.3 11.0 0.9 1.1 1 0 0 1 1 1 0 Lipocalin / cytosolic fatty-acid binding protein family UPF0016 PF01169.14 gi|344211426|ref|YP_004795746.1| - 2.2e-27 95.0 19.7 9.3e-20 70.5 2.5 2.9 2 1 1 3 3 3 2 Uncharacterized protein family UPF0016 Fe_dep_repr_C PF02742.10 gi|344211427|ref|YP_004795747.1| - 1.3e-30 104.8 1.9 2.3e-30 104.1 1.3 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|344211427|ref|YP_004795747.1| - 4.6e-18 64.8 0.2 2.5e-17 62.5 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|344211427|ref|YP_004795747.1| - 5.8e-16 58.2 0.6 2.3e-15 56.3 0.1 2.1 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|344211427|ref|YP_004795747.1| - 1.4e-08 34.3 0.0 3.3e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|344211427|ref|YP_004795747.1| - 1.8e-07 30.7 0.0 4.3e-07 29.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|344211427|ref|YP_004795747.1| - 4.6e-07 30.0 0.1 8.2e-06 26.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|344211427|ref|YP_004795747.1| - 1.6e-05 24.4 0.0 4.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|344211427|ref|YP_004795747.1| - 0.00049 19.4 0.0 0.0016 17.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|344211427|ref|YP_004795747.1| - 0.0005 19.9 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|344211427|ref|YP_004795747.1| - 0.00063 19.4 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Topoisom_bac PF01131.15 gi|344211427|ref|YP_004795747.1| - 0.0016 17.3 0.1 0.0023 16.8 0.1 1.1 1 0 0 1 1 1 1 DNA topoisomerase HTH_IclR PF09339.5 gi|344211427|ref|YP_004795747.1| - 0.0017 17.9 0.1 0.014 14.9 0.0 2.4 2 1 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.16 gi|344211427|ref|YP_004795747.1| - 0.0043 16.4 0.0 0.035 13.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|344211427|ref|YP_004795747.1| - 0.0063 16.2 0.0 0.014 15.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_13 PF11972.3 gi|344211427|ref|YP_004795747.1| - 0.017 14.9 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|344211427|ref|YP_004795747.1| - 0.057 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Penicillinase_R PF03965.11 gi|344211427|ref|YP_004795747.1| - 0.14 12.2 0.1 0.32 11.0 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor BatA PF07584.6 gi|344211428|ref|YP_004795748.1| - 0.019 15.1 0.6 0.021 15.0 0.4 1.1 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal CcoS PF03597.10 gi|344211428|ref|YP_004795748.1| - 0.058 12.8 1.2 0.074 12.5 0.8 1.1 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Papilloma_E5A PF05776.7 gi|344211428|ref|YP_004795748.1| - 0.064 13.4 0.0 0.064 13.4 0.0 1.1 1 0 0 1 1 1 0 Papillomavirus E5A protein MTH865 PF07747.6 gi|344211429|ref|YP_004795749.1| - 4.7e-22 77.4 0.1 5.3e-22 77.2 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family DUF2946 PF11162.3 gi|344211430|ref|YP_004795750.1| - 0.029 14.5 0.0 0.029 14.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2946) DUF4006 PF13179.1 gi|344211430|ref|YP_004795750.1| - 0.095 12.2 0.0 0.095 12.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF4006) DUF2082 PF09855.4 gi|344211431|ref|YP_004795751.1| - 1.5e-28 98.4 0.2 1.6e-28 98.2 0.1 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|344211431|ref|YP_004795751.1| - 8.4e-05 21.6 1.6 0.075 12.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344211431|ref|YP_004795751.1| - 0.0014 18.4 1.6 0.53 10.1 0.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344211431|ref|YP_004795751.1| - 0.0032 16.9 3.2 1 8.9 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2387 PF09526.5 gi|344211431|ref|YP_004795751.1| - 0.0073 16.2 2.3 0.077 12.9 1.5 2.0 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|344211431|ref|YP_004795751.1| - 0.011 15.1 1.3 0.21 11.0 0.0 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.14 gi|344211431|ref|YP_004795751.1| - 0.015 14.7 1.1 2.8 7.5 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|344211431|ref|YP_004795751.1| - 0.016 15.5 1.3 0.032 14.5 0.9 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|344211431|ref|YP_004795751.1| - 0.019 14.7 1.0 0.048 13.4 0.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|344211431|ref|YP_004795751.1| - 0.023 14.6 0.2 3 7.8 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|344211431|ref|YP_004795751.1| - 0.035 13.7 1.4 0.44 10.2 1.0 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|344211431|ref|YP_004795751.1| - 0.046 13.3 3.7 3.1 7.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2225 PF09986.4 gi|344211431|ref|YP_004795751.1| - 0.087 12.2 1.1 0.18 11.2 0.7 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Zn_Tnp_IS91 PF14319.1 gi|344211431|ref|YP_004795751.1| - 0.098 12.1 0.4 5.2 6.6 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-binding domain TerY-C PF15616.1 gi|344211431|ref|YP_004795751.1| - 0.1 12.5 1.8 0.21 11.4 1.2 1.5 1 1 0 1 1 1 0 TerY-C metal binding domain Spt4 PF06093.8 gi|344211431|ref|YP_004795751.1| - 0.11 12.4 0.8 2 8.3 0.0 2.0 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger zf-IS66 PF13005.2 gi|344211431|ref|YP_004795751.1| - 0.14 12.2 3.8 0.23 11.4 0.8 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|344211431|ref|YP_004795751.1| - 0.15 11.5 3.4 5.1 6.6 0.4 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|344211431|ref|YP_004795751.1| - 0.17 11.1 6.1 1.6 8.0 0.4 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|344211431|ref|YP_004795751.1| - 0.18 11.5 4.2 4.2 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.1 gi|344211431|ref|YP_004795751.1| - 0.21 11.5 2.1 1.2 9.0 1.4 1.9 1 1 0 1 1 1 0 CpXC protein UPF0547 PF10571.4 gi|344211431|ref|YP_004795751.1| - 0.23 11.1 2.8 2.6 7.8 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|344211431|ref|YP_004795751.1| - 0.57 10.2 5.9 4 7.5 1.0 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|344211431|ref|YP_004795751.1| - 0.97 9.1 3.1 6 6.6 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.1 gi|344211431|ref|YP_004795751.1| - 1.1 8.9 7.0 4.5 6.9 0.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|344211431|ref|YP_004795751.1| - 4.1 6.9 6.6 1.3 8.4 0.2 2.2 2 0 0 2 2 2 0 HypF finger DJ-1_PfpI PF01965.19 gi|344211432|ref|YP_004795752.1| - 5e-35 120.1 0.1 6.3e-35 119.7 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|344211432|ref|YP_004795752.1| - 3e-10 39.6 0.0 4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|344211432|ref|YP_004795752.1| - 0.0019 17.8 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|344211432|ref|YP_004795752.1| - 0.0029 17.0 0.0 0.0043 16.5 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_5 PF13507.1 gi|344211432|ref|YP_004795752.1| - 0.03 13.2 0.0 0.043 12.7 0.0 1.5 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Hydrolase_6 PF13344.1 gi|344211433|ref|YP_004795753.1| - 1.1e-22 79.8 0.0 2.1e-22 78.8 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344211433|ref|YP_004795753.1| - 4.9e-22 77.4 0.0 1.2e-21 76.1 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|344211433|ref|YP_004795753.1| - 1.8e-11 44.8 0.0 2.4e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|344211433|ref|YP_004795753.1| - 6.2e-09 36.3 0.1 6.2e-05 23.2 0.0 3.4 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|344211433|ref|YP_004795753.1| - 0.00031 20.1 0.1 0.00086 18.6 0.0 1.8 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.7 gi|344211433|ref|YP_004795753.1| - 0.0075 15.8 0.0 0.084 12.4 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Bse634I PF07832.6 gi|344211433|ref|YP_004795753.1| - 0.034 13.2 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Cfr10I/Bse634I restriction endonuclease Response_reg PF00072.19 gi|344211434|ref|YP_004795754.1| - 5.1e-23 81.2 0.0 1.2e-22 80.0 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344211434|ref|YP_004795754.1| - 1.5e-16 60.0 0.2 2.8e-16 59.2 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344211434|ref|YP_004795754.1| - 1.5e-16 60.0 0.1 5.1e-16 58.4 0.1 2.0 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|344211434|ref|YP_004795754.1| - 2e-12 47.1 0.1 7.4e-12 45.2 0.1 2.0 1 1 1 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|344211434|ref|YP_004795754.1| - 4.5e-08 33.4 0.0 4.6e-07 30.1 0.0 2.6 3 0 0 3 3 3 1 PAS domain PAS PF00989.19 gi|344211434|ref|YP_004795754.1| - 1.7e-07 31.0 0.0 5.4e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|344211434|ref|YP_004795754.1| - 1.2e-06 28.1 0.0 5.9e-06 25.9 0.0 2.2 2 0 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.10 gi|344211434|ref|YP_004795754.1| - 0.00039 20.4 0.1 0.0015 18.5 0.0 2.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|344211434|ref|YP_004795754.1| - 0.00064 19.3 0.2 0.0019 17.8 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|344211434|ref|YP_004795754.1| - 0.0056 16.3 0.0 0.019 14.6 0.0 1.8 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|344211434|ref|YP_004795754.1| - 0.01 15.6 0.1 0.042 13.6 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain B12-binding PF02310.14 gi|344211434|ref|YP_004795754.1| - 0.019 14.8 0.0 0.2 11.5 0.0 2.3 2 0 0 2 2 2 0 B12 binding domain DUF2071 PF09844.4 gi|344211435|ref|YP_004795755.1| - 1.8e-29 102.6 0.0 2.3e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) DUF2071 PF09844.4 gi|344211436|ref|YP_004795756.1| - 7.4e-75 251.0 0.0 8.4e-75 250.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|344211436|ref|YP_004795756.1| - 0.00011 21.7 0.0 0.00014 21.2 0.0 1.1 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Macro PF01661.16 gi|344211437|ref|YP_004795757.1| - 2e-28 98.6 0.1 2.5e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Macro domain FtsX PF02687.16 gi|344211438|ref|YP_004795758.1| - 0.056 13.1 4.4 0.065 12.9 3.1 1.1 1 0 0 1 1 1 0 FtsX-like permease family Cation_ATPase_C PF00689.16 gi|344211438|ref|YP_004795758.1| - 0.18 11.3 4.6 0.21 11.1 3.2 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus CDP-OH_P_tran_2 PF08009.6 gi|344211438|ref|YP_004795758.1| - 0.89 9.3 0.0 0.89 9.3 0.0 2.2 2 0 0 2 2 2 0 CDP-alcohol phosphatidyltransferase 2 Aldo_ket_red PF00248.16 gi|344211439|ref|YP_004795759.1| - 3.2e-74 249.2 0.0 3.6e-74 249.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family B12-binding PF02310.14 gi|344211439|ref|YP_004795759.1| - 0.031 14.1 0.0 0.082 12.7 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain NicO PF03824.11 gi|344211440|ref|YP_004795760.1| - 1.3e-08 34.4 9.9 1.3e-08 34.4 6.9 2.2 3 0 0 3 3 3 1 High-affinity nickel-transport protein BTP PF05232.7 gi|344211440|ref|YP_004795760.1| - 0.97 9.2 7.1 1.1 9.0 0.4 2.5 2 0 0 2 2 2 0 Bacterial Transmembrane Pair family NikR_C PF08753.6 gi|344211441|ref|YP_004795761.1| - 2.9e-10 39.8 0.0 4.2e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF2191 PF09957.4 gi|344211441|ref|YP_004795761.1| - 0.0089 15.8 0.0 0.024 14.4 0.0 1.7 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) RHH_1 PF01402.16 gi|344211441|ref|YP_004795761.1| - 0.042 13.7 0.2 0.069 13.0 0.2 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family ABC2_membrane_3 PF12698.2 gi|344211442|ref|YP_004795762.1| - 2e-22 79.6 0.0 2.7e-22 79.2 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|344211442|ref|YP_004795762.1| - 5.7e-12 45.0 3.9 7.7e-12 44.6 2.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|344211442|ref|YP_004795762.1| - 3.7e-08 32.8 7.2 3.7e-08 32.8 5.0 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|344211442|ref|YP_004795762.1| - 8.8e-08 31.5 0.0 1.7e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|344211442|ref|YP_004795762.1| - 0.41 9.8 5.7 0.086 12.1 1.5 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein Flavi_NS4A PF01350.12 gi|344211442|ref|YP_004795762.1| - 0.98 8.9 8.5 2.9 7.4 2.5 2.6 1 1 1 2 2 2 0 Flavivirus non-structural protein NS4A Cytochrom_B_C PF00032.12 gi|344211442|ref|YP_004795762.1| - 3.9 7.7 6.9 10 6.4 3.3 2.5 2 1 0 2 2 2 0 Cytochrome b(C-terminal)/b6/petD ABC2_membrane_3 PF12698.2 gi|344211443|ref|YP_004795763.1| - 0.25 10.3 35.6 0.0076 15.3 18.4 2.8 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|344211444|ref|YP_004795764.1| - 5e-29 101.3 0.0 9.3e-29 100.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211444|ref|YP_004795764.1| - 6.6e-16 59.1 0.0 4.2e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SRP54 PF00448.17 gi|344211444|ref|YP_004795764.1| - 0.00024 20.5 0.0 0.00063 19.2 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|344211444|ref|YP_004795764.1| - 0.00035 20.9 0.7 0.00035 20.9 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344211444|ref|YP_004795764.1| - 0.0013 19.5 0.2 0.0041 17.9 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344211444|ref|YP_004795764.1| - 0.0014 18.0 0.2 0.0027 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|344211444|ref|YP_004795764.1| - 0.0056 16.2 0.9 0.031 13.8 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|344211444|ref|YP_004795764.1| - 0.0078 16.3 0.1 0.027 14.5 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|344211444|ref|YP_004795764.1| - 0.015 14.4 0.0 2.9 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|344211444|ref|YP_004795764.1| - 0.017 15.0 0.0 0.063 13.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|344211444|ref|YP_004795764.1| - 0.025 14.0 0.2 0.61 9.4 0.2 2.2 1 1 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|344211444|ref|YP_004795764.1| - 0.037 13.5 0.5 0.81 9.2 0.0 2.6 2 1 1 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|344211444|ref|YP_004795764.1| - 0.044 13.7 0.1 2.4 8.1 0.1 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|344211444|ref|YP_004795764.1| - 0.059 13.1 0.1 0.21 11.3 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain Thymidylate_kin PF02223.12 gi|344211444|ref|YP_004795764.1| - 0.1 11.9 0.2 1.6 8.1 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase MobB PF03205.9 gi|344211444|ref|YP_004795764.1| - 0.12 12.0 0.1 0.3 10.7 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|344211444|ref|YP_004795764.1| - 0.14 12.0 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Polyketide_cyc2 PF10604.4 gi|344211445|ref|YP_004795765.1| - 2.1e-09 37.6 5.4 2.8e-09 37.2 3.7 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|344211445|ref|YP_004795765.1| - 0.0002 21.3 0.3 0.00026 20.9 0.2 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|344211445|ref|YP_004795765.1| - 0.033 14.2 0.7 0.15 12.1 0.5 2.0 2 0 0 2 2 2 0 Activator of Hsp90 ATPase homolog 1-like protein DUF3931 PF13082.1 gi|344211445|ref|YP_004795765.1| - 0.052 13.4 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3931) HATPase_c PF02518.21 gi|344211446|ref|YP_004795766.1| - 2.2e-19 69.2 0.1 3.8e-19 68.4 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344211446|ref|YP_004795766.1| - 1e-11 44.6 2.0 1e-11 44.6 1.4 2.6 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|344211446|ref|YP_004795766.1| - 2e-05 24.3 1.0 7.2e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain SPOB_a PF14689.1 gi|344211446|ref|YP_004795766.1| - 0.023 14.2 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF418 PF04235.7 gi|344211446|ref|YP_004795766.1| - 0.024 14.3 0.5 0.04 13.6 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF418) DUF1850 PF08905.6 gi|344211446|ref|YP_004795766.1| - 0.12 12.1 0.0 21 5.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1850) 2TM PF13239.1 gi|344211446|ref|YP_004795766.1| - 0.16 12.0 0.1 0.3 11.1 0.1 1.4 1 0 0 1 1 1 0 2TM domain zf-C2H2_6 PF13912.1 gi|344211447|ref|YP_004795767.1| - 0.00042 20.1 3.6 0.026 14.4 0.4 2.6 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|344211447|ref|YP_004795767.1| - 0.00054 20.0 0.5 0.28 11.3 0.0 2.4 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding Zn_ribbon_recom PF13408.1 gi|344211447|ref|YP_004795767.1| - 0.0073 16.5 0.2 0.0073 16.5 0.2 2.0 1 1 1 2 2 2 1 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.1 gi|344211447|ref|YP_004795767.1| - 0.012 15.2 1.4 0.03 13.9 1.0 1.8 1 1 0 1 1 1 0 zinc-finger of a C2HC-type HNH_5 PF14279.1 gi|344211447|ref|YP_004795767.1| - 0.038 13.9 1.5 0.2 11.7 0.1 2.1 1 1 1 2 2 2 0 HNH endonuclease zf-H2C2_2 PF13465.1 gi|344211447|ref|YP_004795767.1| - 0.039 14.2 6.0 3.8 7.9 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|344211447|ref|YP_004795767.1| - 0.043 14.1 10.6 0.3 11.5 1.0 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type FYVE PF01363.16 gi|344211447|ref|YP_004795767.1| - 0.11 12.3 2.5 0.14 12.0 1.7 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|344211447|ref|YP_004795767.1| - 0.24 11.8 9.3 0.95 9.9 0.9 2.8 2 1 1 3 3 3 0 C2H2-type zinc finger zf-TRAF PF02176.13 gi|344211447|ref|YP_004795767.1| - 0.31 11.4 2.7 0.44 10.9 0.3 2.1 2 1 0 2 2 2 0 TRAF-type zinc finger Zn-ribbon_8 PF09723.5 gi|344211447|ref|YP_004795767.1| - 0.4 10.6 8.1 0.54 10.2 2.0 2.9 2 1 1 3 3 3 0 Zinc ribbon domain DZR PF12773.2 gi|344211447|ref|YP_004795767.1| - 0.61 9.9 6.1 3.8 7.3 4.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.4 gi|344211447|ref|YP_004795767.1| - 0.76 9.6 3.1 18 5.2 0.2 2.3 1 1 1 3 3 3 0 LITAF-like zinc ribbon domain RRN7 PF11781.3 gi|344211447|ref|YP_004795767.1| - 0.99 8.9 10.7 0.17 11.4 1.1 2.9 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Trm112p PF03966.11 gi|344211447|ref|YP_004795767.1| - 1 9.7 5.5 2.4 8.5 0.3 2.2 1 1 1 2 2 2 0 Trm112p-like protein DUF2296 PF10058.4 gi|344211447|ref|YP_004795767.1| - 1.8 8.3 5.0 3.2 7.5 1.2 2.3 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-trcl PF13451.1 gi|344211447|ref|YP_004795767.1| - 1.8 8.2 5.7 4.5 6.9 1.0 2.4 2 1 0 2 2 2 0 Probable zinc-binding domain HypA PF01155.14 gi|344211447|ref|YP_004795767.1| - 2.6 7.7 5.3 1.7 8.3 0.6 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Inhibitor_I67 PF11405.3 gi|344211447|ref|YP_004795767.1| - 2.9 8.0 0.1 2.9 8.0 0.0 2.6 2 1 1 3 3 3 0 Bromelain inhibitor VI XPA_N PF01286.13 gi|344211447|ref|YP_004795767.1| - 4.8 6.9 7.8 0.76 9.4 0.3 2.7 3 0 0 3 3 3 0 XPA protein N-terminal zf-AN1 PF01428.11 gi|344211447|ref|YP_004795767.1| - 6.8 6.6 7.2 6.5 6.7 0.1 2.7 3 0 0 3 3 3 0 AN1-like Zinc finger Nudix_N_2 PF14803.1 gi|344211447|ref|YP_004795767.1| - 8.3 6.1 7.6 4.1 7.1 0.9 2.9 3 1 0 3 3 3 0 Nudix N-terminal HATPase_c PF02518.21 gi|344211448|ref|YP_004795768.1| - 2.3e-18 65.9 0.0 5.1e-18 64.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|344211448|ref|YP_004795768.1| - 4.3e-07 29.9 0.1 8.3e-07 29.0 0.1 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.1 gi|344211448|ref|YP_004795768.1| - 1.4e-06 28.1 0.0 3.6e-06 26.7 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|344211448|ref|YP_004795768.1| - 1.6e-05 24.8 0.0 4.3e-05 23.4 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|344211448|ref|YP_004795768.1| - 0.00036 20.2 0.2 0.00081 19.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF3186 PF11382.3 gi|344211448|ref|YP_004795768.1| - 0.0099 15.0 1.0 0.015 14.4 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3186) OKR_DC_1_N PF03709.10 gi|344211448|ref|YP_004795768.1| - 0.021 14.8 0.6 0.041 13.9 0.0 1.8 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain CoA_binding PF02629.14 gi|344211449|ref|YP_004795769.1| - 4.1e-22 78.5 0.8 4.1e-22 78.5 0.5 2.2 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|344211449|ref|YP_004795769.1| - 4.1e-13 49.1 0.6 8.7e-13 48.1 0.4 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|344211449|ref|YP_004795769.1| - 1.1e-08 34.7 0.0 2e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|344211449|ref|YP_004795769.1| - 3.7e-08 33.5 0.1 1.5e-06 28.3 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|344211450|ref|YP_004795770.1| - 2.7e-64 216.2 0.7 4e-64 215.7 0.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|344211450|ref|YP_004795770.1| - 4.5e-21 75.0 4.7 4.5e-21 75.0 3.2 2.0 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|344211450|ref|YP_004795770.1| - 7.4e-14 51.5 1.8 1.3e-11 44.1 0.5 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.14 gi|344211450|ref|YP_004795770.1| - 1.7e-12 47.2 0.4 1.7e-12 47.2 0.3 2.1 3 0 0 3 3 3 1 CoA-ligase ATP-grasp_4 PF13535.1 gi|344211450|ref|YP_004795770.1| - 7.7e-11 42.0 1.3 2e-10 40.7 0.2 2.1 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|344211450|ref|YP_004795770.1| - 9.7e-09 34.8 0.1 1.7e-08 33.9 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|344211450|ref|YP_004795770.1| - 5.8e-07 29.2 0.5 1.2e-06 28.2 0.3 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|344211450|ref|YP_004795770.1| - 0.00097 18.5 2.0 0.0019 17.6 0.2 2.3 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|344211450|ref|YP_004795770.1| - 0.0094 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|344211450|ref|YP_004795770.1| - 0.053 12.2 0.1 0.089 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon SIR2 PF02146.12 gi|344211451|ref|YP_004795771.1| - 1.3e-41 142.2 0.0 1.7e-41 141.8 0.0 1.2 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|344211451|ref|YP_004795771.1| - 0.00018 21.3 0.1 0.044 13.5 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DUF4129 PF13559.1 gi|344211451|ref|YP_004795771.1| - 0.98 9.4 4.5 6.5 6.8 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) PAS_4 PF08448.5 gi|344211452|ref|YP_004795772.1| - 0.0033 17.4 0.0 0.0051 16.8 0.0 1.2 1 0 0 1 1 1 1 PAS fold T2SE PF00437.15 gi|344211454|ref|YP_004795774.1| - 2.9e-48 164.1 0.0 4.1e-48 163.6 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|344211454|ref|YP_004795774.1| - 0.014 14.8 0.2 1.7 8.0 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|344211454|ref|YP_004795774.1| - 0.022 14.2 0.0 0.056 12.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain HTH_19 PF12844.2 gi|344211454|ref|YP_004795774.1| - 0.04 13.9 0.6 0.23 11.5 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain AAA_22 PF13401.1 gi|344211454|ref|YP_004795774.1| - 0.079 13.0 0.0 0.28 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|344211454|ref|YP_004795774.1| - 0.15 11.2 0.0 0.32 10.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SF PF00482.18 gi|344211455|ref|YP_004795775.1| - 4.5e-31 107.3 16.6 2.5e-19 69.3 1.6 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1129 PF06570.6 gi|344211455|ref|YP_004795775.1| - 0.053 12.8 2.4 0.94 8.7 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) DUF2721 PF11026.3 gi|344211455|ref|YP_004795775.1| - 0.34 10.5 12.4 0.091 12.4 0.4 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF2721) DNA_ligase_A_M PF01068.16 gi|344211456|ref|YP_004795776.1| - 3.2e-45 154.0 0.0 4.4e-45 153.5 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|344211456|ref|YP_004795776.1| - 7.5e-40 136.6 0.0 1.9e-38 132.0 0.0 2.1 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|344211456|ref|YP_004795776.1| - 1.1e-17 64.2 0.1 8.7e-17 61.3 0.0 2.5 3 0 0 3 3 3 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|344211456|ref|YP_004795776.1| - 0.0038 16.8 0.0 0.02 14.5 0.0 2.2 1 1 0 1 1 1 1 DNA ligase OB-like domain mRNA_cap_enzyme PF01331.14 gi|344211456|ref|YP_004795776.1| - 0.0073 16.0 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 1 mRNA capping enzyme, catalytic domain Lactamase_B_3 PF13483.1 gi|344211457|ref|YP_004795777.1| - 1.1e-25 90.1 0.1 1.7e-25 89.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|344211457|ref|YP_004795777.1| - 0.0069 15.9 0.4 0.013 15.0 0.3 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PhrC_PhrF PF11131.3 gi|344211458|ref|YP_004795778.1| - 5.9 6.5 6.0 0.5 9.9 0.4 2.0 2 0 0 2 2 2 0 Rap-phr extracellular signalling DUF347 PF03988.7 gi|344211458|ref|YP_004795778.1| - 8.2 6.3 12.8 0.26 11.1 1.4 3.1 2 1 1 3 3 3 0 Repeat of Unknown Function (DUF347) PQQ_2 PF13360.1 gi|344211459|ref|YP_004795779.1| - 1.6e-42 145.6 31.3 7.9e-20 71.3 4.4 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|344211459|ref|YP_004795779.1| - 1.5e-26 91.8 41.8 1.1e-05 25.4 0.5 9.2 9 0 0 9 9 9 9 PQQ-like domain PQQ PF01011.16 gi|344211459|ref|YP_004795779.1| - 1.3e-19 68.6 17.0 0.00015 21.0 0.2 8.6 8 0 0 8 8 8 6 PQQ enzyme repeat Ricin_B_lectin PF00652.17 gi|344211459|ref|YP_004795779.1| - 0.002 18.1 0.6 1.7 8.6 0.2 2.7 2 1 0 2 2 2 2 Ricin-type beta-trefoil lectin domain PsbP PF01789.11 gi|344211459|ref|YP_004795779.1| - 0.049 13.0 0.2 0.59 9.5 0.1 2.4 2 0 0 2 2 2 0 PsbP TP6A_N PF04406.9 gi|344211460|ref|YP_004795780.1| - 3.6e-20 71.3 0.3 6.1e-20 70.6 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|344211461|ref|YP_004795781.1| - 5.7e-67 224.2 0.0 1.6e-66 222.8 0.0 1.8 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|344211461|ref|YP_004795781.1| - 2.3e-16 59.4 0.1 1.6e-15 56.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|344211461|ref|YP_004795781.1| - 8.2e-13 48.1 0.0 2.5e-12 46.6 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|344211461|ref|YP_004795781.1| - 0.0015 18.3 2.4 0.0048 16.6 0.0 2.7 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|344211461|ref|YP_004795781.1| - 0.024 14.3 0.0 0.079 12.6 0.0 1.8 1 0 0 1 1 1 0 GHKL domain Pro_CA PF00484.14 gi|344211461|ref|YP_004795781.1| - 0.14 12.1 1.3 0.55 10.2 0.9 2.0 1 0 0 1 1 1 0 Carbonic anhydrase MAF_flag10 PF01973.13 gi|344211461|ref|YP_004795781.1| - 0.16 11.4 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF115 DNA_gyraseB PF00204.20 gi|344211462|ref|YP_004795782.1| - 8.8e-61 204.0 0.1 1.8e-60 203.1 0.0 1.6 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|344211462|ref|YP_004795782.1| - 2.5e-30 104.0 0.0 4.8e-30 103.1 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|344211462|ref|YP_004795782.1| - 3.8e-26 90.9 0.0 1.7e-25 88.8 0.0 2.1 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|344211462|ref|YP_004795782.1| - 1.3e-20 73.1 0.0 2.5e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|344211462|ref|YP_004795782.1| - 3.7e-05 23.4 0.0 8.3e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|344211462|ref|YP_004795782.1| - 0.021 14.8 0.0 0.062 13.3 0.0 1.8 1 0 0 1 1 1 0 Toprim domain DNA_topoisoIV PF00521.15 gi|344211463|ref|YP_004795783.1| - 1.1e-152 508.7 0.0 1.5e-152 508.3 0.0 1.2 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|344211463|ref|YP_004795783.1| - 6.2e-65 214.3 6.3 1.2e-12 46.8 0.1 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller NTase_sub_bind PF08780.6 gi|344211463|ref|YP_004795783.1| - 0.042 13.6 0.2 0.12 12.2 0.1 1.7 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like Pedibin PF08182.6 gi|344211463|ref|YP_004795783.1| - 0.097 12.1 0.6 0.54 9.8 0.2 2.4 2 0 0 2 2 2 0 Pedibin/Hym-346 family FAD_binding_6 PF00970.19 gi|344211464|ref|YP_004795784.1| - 1.2e-15 57.4 0.0 1.9e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_1 PF00175.16 gi|344211464|ref|YP_004795784.1| - 1.6e-12 47.9 0.0 2.5e-10 40.8 0.0 2.3 2 0 0 2 2 2 2 Oxidoreductase NAD-binding domain Arginase PF00491.16 gi|344211465|ref|YP_004795785.1| - 1e-76 257.8 2.5 1.2e-76 257.6 1.7 1.0 1 0 0 1 1 1 1 Arginase family Epimerase PF01370.16 gi|344211466|ref|YP_004795786.1| - 3.2e-40 138.0 0.4 3.9e-40 137.7 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|344211466|ref|YP_004795786.1| - 1.3e-11 43.9 0.2 1.8e-11 43.4 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|344211466|ref|YP_004795786.1| - 2.4e-11 42.8 0.6 1.1e-10 40.7 0.4 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|344211466|ref|YP_004795786.1| - 1.1e-09 37.6 0.1 8.7e-07 28.1 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|344211466|ref|YP_004795786.1| - 2.1e-09 36.7 0.1 4e-06 25.9 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|344211466|ref|YP_004795786.1| - 5.1e-06 26.6 0.1 6.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|344211466|ref|YP_004795786.1| - 1.9e-05 24.6 0.6 0.019 14.8 0.1 2.5 1 1 1 2 2 2 2 short chain dehydrogenase KR PF08659.5 gi|344211466|ref|YP_004795786.1| - 0.083 12.5 0.2 1.6 8.3 0.1 2.2 2 0 0 2 2 2 0 KR domain HrcA_DNA-bdg PF03444.10 gi|344211467|ref|YP_004795787.1| - 1.8e-39 132.9 0.1 2.7e-39 132.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|344211467|ref|YP_004795787.1| - 1.4e-07 31.5 0.0 2.7e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|344211467|ref|YP_004795787.1| - 8.8e-07 28.4 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|344211467|ref|YP_004795787.1| - 0.0016 17.9 0.1 0.0044 16.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|344211467|ref|YP_004795787.1| - 0.0091 15.6 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Phage_terminase PF10668.4 gi|344211467|ref|YP_004795787.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_20 PF12840.2 gi|344211467|ref|YP_004795787.1| - 0.06 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rio2_N PF09202.6 gi|344211467|ref|YP_004795787.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal Pyr_redox_2 PF07992.9 gi|344211468|ref|YP_004795788.1| - 2.2e-15 57.1 0.0 3.9e-15 56.2 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344211468|ref|YP_004795788.1| - 5.1e-08 33.2 0.5 7.9e-07 29.4 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344211468|ref|YP_004795788.1| - 0.0014 18.7 0.9 0.34 10.9 0.0 3.1 2 2 1 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344211468|ref|YP_004795788.1| - 0.0051 16.5 1.0 8 6.2 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|344211468|ref|YP_004795788.1| - 0.025 14.1 0.6 2.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PNP_UDP_1 PF01048.15 gi|344211469|ref|YP_004795789.1| - 9.5e-47 158.9 1.5 1.2e-46 158.6 1.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily dCMP_cyt_deam_1 PF00383.17 gi|344211470|ref|YP_004795790.1| - 1.4e-16 59.9 0.0 1.5e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|344211470|ref|YP_004795790.1| - 5.7e-13 48.9 0.1 7.3e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region YwqJ-deaminase PF14431.1 gi|344211470|ref|YP_004795790.1| - 0.029 14.2 0.2 0.1 12.4 0.2 1.7 1 1 0 1 1 1 0 YwqJ-like deaminase LmjF365940-deam PF14421.1 gi|344211470|ref|YP_004795790.1| - 0.53 9.6 2.1 2.5 7.4 0.1 2.0 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases PGM_PMM_I PF02878.11 gi|344211471|ref|YP_004795791.1| - 8.4e-33 112.7 0.0 1.9e-32 111.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|344211471|ref|YP_004795791.1| - 5.5e-22 78.0 0.4 1.2e-21 76.9 0.3 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|344211471|ref|YP_004795791.1| - 4.2e-13 49.1 0.0 1.4e-12 47.3 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|344211471|ref|YP_004795791.1| - 0.0018 18.3 0.0 0.0045 17.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF362 PF04015.7 gi|344211471|ref|YP_004795791.1| - 0.015 14.7 0.0 32 3.9 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF362) Methyltransf_21 PF05050.7 gi|344211472|ref|YP_004795792.1| - 1.1e-25 90.5 0.0 1.5e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.6 gi|344211472|ref|YP_004795792.1| - 9.9e-06 24.8 0.0 1.6e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_18 PF12847.2 gi|344211472|ref|YP_004795792.1| - 2e-05 25.1 0.0 3.4e-05 24.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|344211472|ref|YP_004795792.1| - 0.056 13.0 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Proteasome PF00227.21 gi|344211473|ref|YP_004795793.1| - 4.2e-43 146.8 0.4 4.9e-43 146.6 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF555 PF04475.7 gi|344211475|ref|YP_004795795.1| - 4.8e-49 164.5 0.1 6.5e-49 164.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|344211475|ref|YP_004795795.1| - 0.12 11.8 0.2 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Dodecin PF07311.7 gi|344211475|ref|YP_004795795.1| - 0.15 12.1 0.7 0.56 10.2 0.1 2.0 2 0 0 2 2 2 0 Dodecin CBS PF00571.23 gi|344211476|ref|YP_004795796.1| - 6.5e-18 64.2 0.8 3.4e-09 36.3 0.0 2.6 2 1 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|344211476|ref|YP_004795796.1| - 6.4e-13 48.7 1.3 1.2e-12 47.8 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|344211476|ref|YP_004795796.1| - 5e-12 45.4 0.1 2e-11 43.5 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|344211476|ref|YP_004795796.1| - 4.7e-10 39.3 0.0 9e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|344211476|ref|YP_004795796.1| - 5.9e-05 22.6 0.4 0.00012 21.6 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|344211476|ref|YP_004795796.1| - 0.00012 21.8 0.1 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|344211476|ref|YP_004795796.1| - 0.0021 18.2 0.0 0.0049 17.0 0.0 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|344211476|ref|YP_004795796.1| - 0.018 14.3 0.2 0.15 11.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344211476|ref|YP_004795796.1| - 0.068 12.8 0.2 0.46 10.1 0.1 2.3 2 0 0 2 2 2 0 MarR family MarR PF01047.17 gi|344211476|ref|YP_004795796.1| - 0.085 12.5 0.2 0.84 9.3 0.0 2.3 2 0 0 2 2 2 0 MarR family DUF3618 PF12277.3 gi|344211476|ref|YP_004795796.1| - 0.8 9.7 5.4 0.16 11.9 0.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) AIRS_C PF02769.17 gi|344211478|ref|YP_004795798.1| - 3.2e-22 79.1 0.0 4.8e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|344211478|ref|YP_004795798.1| - 1.4e-16 60.4 1.6 1.4e-16 60.4 1.1 2.2 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.17 gi|344211479|ref|YP_004795799.1| - 2.3e-11 42.9 14.3 1.8e-10 40.0 9.9 2.1 1 1 0 1 1 1 1 Peptidase family M50 TraB PF01963.12 gi|344211480|ref|YP_004795800.1| - 6e-38 130.7 0.1 3.9e-20 72.3 0.0 2.5 3 0 0 3 3 3 2 TraB family DUF1517 PF07466.6 gi|344211480|ref|YP_004795800.1| - 7.2 5.5 6.6 5.2 5.9 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1517) PadR PF03551.9 gi|344211481|ref|YP_004795801.1| - 2.3e-16 59.3 0.8 2.8e-16 59.0 0.6 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|344211481|ref|YP_004795801.1| - 0.0012 18.6 0.2 0.0016 18.2 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|344211481|ref|YP_004795801.1| - 0.0013 18.9 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|344211481|ref|YP_004795801.1| - 0.1 12.2 0.1 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) 4HBT PF03061.17 gi|344211482|ref|YP_004795802.1| - 1.9e-17 63.1 0.1 2.8e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|344211482|ref|YP_004795802.1| - 2.9e-06 27.7 0.0 3.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|344211482|ref|YP_004795802.1| - 0.036 13.0 0.0 0.043 12.7 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase TraF_2 PF13729.1 gi|344211483|ref|YP_004795803.1| - 0.11 11.2 0.3 0.15 10.8 0.2 1.1 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein 2OG-Fe_Oxy_2 PF10014.4 gi|344211484|ref|YP_004795804.1| - 0.07 12.5 0.1 0.07 12.5 0.0 1.0 1 0 0 1 1 1 0 2OG-Fe dioxygenase STT3 PF02516.9 gi|344211485|ref|YP_004795805.1| - 5.5e-18 65.2 29.7 2.6e-17 62.9 20.6 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Glycos_transf_2 PF00535.21 gi|344211486|ref|YP_004795806.1| - 3.5e-18 65.8 0.1 5e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211486|ref|YP_004795806.1| - 4.2e-10 39.8 1.0 1.1e-09 38.4 0.7 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|344211486|ref|YP_004795806.1| - 2.4e-06 26.8 0.5 0.028 13.4 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|344211486|ref|YP_004795806.1| - 0.12 12.0 3.1 0.7 9.5 2.1 2.3 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Sulfatase PF00884.18 gi|344211487|ref|YP_004795807.1| - 5.6e-20 71.7 0.5 1.1e-19 70.7 0.4 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|344211487|ref|YP_004795807.1| - 0.00019 20.8 0.3 0.0021 17.4 0.1 2.4 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|344211487|ref|YP_004795807.1| - 0.032 13.6 0.0 0.058 12.7 0.0 1.5 1 0 0 1 1 1 0 Metalloenzyme superfamily UPF0104 PF03706.8 gi|344211488|ref|YP_004795808.1| - 2.3e-33 115.7 26.4 2.8e-33 115.4 18.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|344211489|ref|YP_004795809.1| - 1.1e-30 106.5 0.1 2.1e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211489|ref|YP_004795809.1| - 1.6e-11 44.4 0.0 2.5e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|344211489|ref|YP_004795809.1| - 1.3e-07 30.9 0.0 2e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NfeD PF01957.13 gi|344211489|ref|YP_004795809.1| - 0.15 12.1 2.7 0.22 11.6 1.9 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding ABC2_membrane_3 PF12698.2 gi|344211489|ref|YP_004795809.1| - 1.1 8.1 7.0 29 3.5 4.9 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein PMT_2 PF13231.1 gi|344211490|ref|YP_004795810.1| - 4.2e-21 75.4 9.7 4.2e-21 75.4 6.7 2.9 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|344211490|ref|YP_004795810.1| - 1.3e-14 54.1 10.5 1.3e-14 54.1 7.3 2.4 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase STT3 PF02516.9 gi|344211490|ref|YP_004795810.1| - 0.0019 17.2 7.4 0.0019 17.2 5.1 2.3 2 0 0 2 2 2 2 Oligosaccharyl transferase STT3 subunit DUF2723 PF11028.3 gi|344211490|ref|YP_004795810.1| - 0.013 15.0 5.0 0.055 12.9 3.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2723) Glycos_transf_1 PF00534.15 gi|344211491|ref|YP_004795811.1| - 8.6e-31 106.6 0.0 1.1e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344211491|ref|YP_004795811.1| - 3.5e-19 69.2 0.1 1.6e-18 67.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344211491|ref|YP_004795811.1| - 7.2e-11 42.2 0.0 1.7e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344211491|ref|YP_004795811.1| - 0.00029 20.9 5.0 0.00029 20.9 3.5 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Polysacc_synt_C PF14667.1 gi|344211492|ref|YP_004795812.1| - 3.4e-21 75.5 14.4 3.8e-21 75.4 10.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|344211492|ref|YP_004795812.1| - 0.00011 20.7 4.5 0.00015 20.3 3.1 1.1 1 0 0 1 1 1 1 MviN-like protein Glycos_transf_1 PF00534.15 gi|344211493|ref|YP_004795813.1| - 6.3e-45 152.6 0.0 8.6e-45 152.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344211493|ref|YP_004795813.1| - 5.6e-28 97.7 0.0 8.7e-28 97.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344211493|ref|YP_004795813.1| - 5e-18 65.1 0.1 1.4e-17 63.7 0.0 1.8 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344211493|ref|YP_004795813.1| - 0.00049 19.8 0.0 0.0029 17.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Mito_fiss_Elm1 PF06258.6 gi|344211493|ref|YP_004795813.1| - 0.0096 14.9 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial fission ELM1 CobN-Mg_chel PF02514.11 gi|344211493|ref|YP_004795813.1| - 0.0096 13.3 0.0 0.0096 13.3 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LysR_substrate PF03466.15 gi|344211493|ref|YP_004795813.1| - 0.06 12.4 0.1 0.12 11.4 0.1 1.4 1 0 0 1 1 1 0 LysR substrate binding domain Phosphodiest PF01663.17 gi|344211494|ref|YP_004795814.1| - 8.5e-17 61.5 0.0 1.2e-16 61.0 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|344211494|ref|YP_004795814.1| - 2.3e-06 27.2 0.3 3.4e-06 26.6 0.2 1.2 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|344211494|ref|YP_004795814.1| - 0.014 14.6 0.2 0.44 9.6 0.1 2.1 1 1 0 1 1 1 0 Sulfatase Sulfatase PF00884.18 gi|344211495|ref|YP_004795815.1| - 9.4e-34 116.9 0.0 1.3e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|344211495|ref|YP_004795815.1| - 3.4e-12 46.3 0.4 7.2e-11 42.0 0.3 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|344211495|ref|YP_004795815.1| - 4.3e-05 22.1 0.0 9e-05 21.0 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|344211495|ref|YP_004795815.1| - 0.0022 16.8 0.0 0.0035 16.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Metalloenzyme PF01676.13 gi|344211495|ref|YP_004795815.1| - 0.1 11.9 0.0 0.36 10.1 0.0 1.9 3 0 0 3 3 3 0 Metalloenzyme superfamily TrmB PF01978.14 gi|344211496|ref|YP_004795816.1| - 6.6e-19 67.3 0.0 1.4e-18 66.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|344211496|ref|YP_004795816.1| - 0.00044 19.7 0.0 0.00083 18.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|344211496|ref|YP_004795816.1| - 0.0089 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|344211496|ref|YP_004795816.1| - 0.041 13.9 0.0 0.07 13.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|344211496|ref|YP_004795816.1| - 0.15 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Glycos_transf_2 PF00535.21 gi|344211497|ref|YP_004795817.1| - 1.5e-19 70.2 0.0 2.6e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211497|ref|YP_004795817.1| - 7.5e-09 35.7 0.0 1.1e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|344211497|ref|YP_004795817.1| - 1.7e-05 25.0 0.0 3.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|344211497|ref|YP_004795817.1| - 0.00036 20.6 0.0 0.00068 19.7 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.1 gi|344211497|ref|YP_004795817.1| - 0.03 13.5 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 UPF0060 PF02694.10 gi|344211497|ref|YP_004795817.1| - 0.073 13.0 1.8 0.12 12.4 1.3 1.3 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family HLH PF00010.21 gi|344211498|ref|YP_004795818.1| - 0.13 11.9 0.1 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-loop-helix DNA-binding domain HxlR PF01638.12 gi|344211499|ref|YP_004795819.1| - 1.8e-22 78.7 0.0 2.4e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|344211499|ref|YP_004795819.1| - 9.9e-08 32.2 0.0 1.4e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|344211499|ref|YP_004795819.1| - 8.5e-06 25.7 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|344211499|ref|YP_004795819.1| - 0.00084 19.0 0.2 0.0012 18.6 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344211499|ref|YP_004795819.1| - 0.001 18.6 0.1 0.0015 18.1 0.1 1.2 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|344211499|ref|YP_004795819.1| - 0.0015 18.2 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|344211499|ref|YP_004795819.1| - 0.0021 17.7 0.0 0.0034 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|344211499|ref|YP_004795819.1| - 0.0031 17.2 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Trp_repressor PF01371.14 gi|344211499|ref|YP_004795819.1| - 0.005 16.7 0.0 0.0073 16.1 0.0 1.3 1 0 0 1 1 1 1 Trp repressor protein TrmB PF01978.14 gi|344211499|ref|YP_004795819.1| - 0.0063 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344211499|ref|YP_004795819.1| - 0.0076 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1654 PF07867.6 gi|344211499|ref|YP_004795819.1| - 0.021 14.2 0.1 0.031 13.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) PAS_6 PF08348.6 gi|344211499|ref|YP_004795819.1| - 0.049 13.1 0.0 0.059 12.9 0.0 1.1 1 0 0 1 1 1 0 YheO-like PAS domain TFIIE_alpha PF02002.12 gi|344211499|ref|YP_004795819.1| - 0.1 12.0 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_43 PF09904.4 gi|344211499|ref|YP_004795819.1| - 0.14 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Sec10 PF07393.6 gi|344211499|ref|YP_004795819.1| - 0.14 10.3 0.0 0.16 10.1 0.0 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec10 DoxX PF07681.7 gi|344211500|ref|YP_004795820.1| - 7.4e-10 39.1 9.7 7.4e-10 39.1 6.8 1.6 2 0 0 2 2 2 1 DoxX SURF4 PF02077.10 gi|344211500|ref|YP_004795820.1| - 0.00039 19.8 0.4 0.0008 18.8 0.1 1.5 2 0 0 2 2 2 1 SURF4 family HR_lesion PF05514.6 gi|344211500|ref|YP_004795820.1| - 0.0077 16.0 1.7 0.012 15.4 0.2 1.8 1 1 1 2 2 2 1 HR-like lesion-inducing DoxX_2 PF13564.1 gi|344211500|ref|YP_004795820.1| - 2 8.4 10.2 4.4 7.3 7.0 1.6 1 1 0 1 1 1 0 DoxX-like family Rhomboid PF01694.17 gi|344211501|ref|YP_004795821.1| - 2.2e-05 24.5 14.6 2.2e-05 24.5 10.1 2.5 2 1 0 2 2 2 1 Rhomboid family Methyltransf_26 PF13659.1 gi|344211502|ref|YP_004795822.1| - 1.1e-15 57.6 0.1 1.6e-15 57.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|344211502|ref|YP_004795822.1| - 9.7e-14 51.3 0.0 1.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|344211502|ref|YP_004795822.1| - 1.7e-13 50.2 0.0 2.7e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|344211502|ref|YP_004795822.1| - 1.3e-09 37.7 0.0 2.1e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211502|ref|YP_004795822.1| - 1.4e-09 38.4 0.0 5.9e-09 36.5 0.0 2.0 2 1 1 3 3 2 1 Methyltransferase domain PrmA PF06325.8 gi|344211502|ref|YP_004795822.1| - 3.8e-09 36.0 0.0 5.2e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|344211502|ref|YP_004795822.1| - 5.4e-08 33.2 0.0 1.5e-07 31.7 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344211502|ref|YP_004795822.1| - 1.4e-07 31.7 0.0 4.3e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|344211502|ref|YP_004795822.1| - 1e-06 28.2 0.0 1.4e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|344211502|ref|YP_004795822.1| - 5.6e-06 26.1 0.0 7.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344211502|ref|YP_004795822.1| - 2.1e-05 23.7 0.0 2.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|344211502|ref|YP_004795822.1| - 0.00034 20.3 0.0 0.00043 20.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211502|ref|YP_004795822.1| - 0.00037 20.9 0.0 0.00071 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|344211502|ref|YP_004795822.1| - 0.00094 18.3 0.0 0.0015 17.6 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase RrnaAD PF00398.15 gi|344211502|ref|YP_004795822.1| - 0.0011 18.0 0.0 0.0016 17.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|344211502|ref|YP_004795822.1| - 0.0048 16.0 0.0 0.006 15.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|344211502|ref|YP_004795822.1| - 0.0048 16.4 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase FtsJ PF01728.14 gi|344211502|ref|YP_004795822.1| - 0.015 15.2 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Met_10 PF02475.11 gi|344211502|ref|YP_004795822.1| - 0.025 14.1 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein FmrO PF07091.6 gi|344211502|ref|YP_004795822.1| - 0.039 12.9 0.0 0.054 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|344211502|ref|YP_004795822.1| - 0.077 11.6 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) HATPase_c PF02518.21 gi|344211503|ref|YP_004795823.1| - 1.8e-22 79.1 0.1 3.7e-22 78.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344211503|ref|YP_004795823.1| - 2.7e-13 49.8 0.1 8.1e-13 48.3 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|344211503|ref|YP_004795823.1| - 7.3e-07 29.5 0.1 2.3e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|344211503|ref|YP_004795823.1| - 5.2e-06 26.2 0.0 1.2e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|344211503|ref|YP_004795823.1| - 0.00074 19.1 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|344211503|ref|YP_004795823.1| - 0.0053 16.7 0.0 0.015 15.2 0.0 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|344211503|ref|YP_004795823.1| - 0.02 14.5 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|344211503|ref|YP_004795823.1| - 0.028 14.5 0.0 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 GAF domain GAF PF01590.21 gi|344211503|ref|YP_004795823.1| - 0.06 13.4 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 GAF domain HATPase_c PF02518.21 gi|344211504|ref|YP_004795824.1| - 2e-18 66.1 0.0 4e-18 65.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|344211504|ref|YP_004795824.1| - 2.4e-13 50.0 0.1 4.9e-13 49.0 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.1 gi|344211504|ref|YP_004795824.1| - 0.00012 21.9 0.3 0.00069 19.3 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|344211504|ref|YP_004795824.1| - 0.0015 18.4 4.1 0.0023 17.8 0.1 3.0 1 1 2 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|344211504|ref|YP_004795824.1| - 0.0016 18.0 0.0 0.0038 16.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|344211504|ref|YP_004795824.1| - 0.027 14.1 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|344211505|ref|YP_004795825.1| - 4.2e-19 68.6 0.0 4.8e-19 68.4 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344211506|ref|YP_004795826.1| - 3.8e-27 94.1 0.0 8e-27 93.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344211506|ref|YP_004795826.1| - 1.9e-24 85.8 0.6 2.3e-11 43.7 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|344211506|ref|YP_004795826.1| - 8.8e-22 77.4 0.0 2.1e-12 47.3 0.0 3.1 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|344211506|ref|YP_004795826.1| - 2.5e-13 49.7 0.0 4.3e-06 26.4 0.0 2.8 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|344211506|ref|YP_004795826.1| - 2.5e-09 37.0 0.1 2.5e-09 37.0 0.0 2.6 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|344211506|ref|YP_004795826.1| - 6.1e-09 36.5 1.2 6.8e-08 33.1 0.1 3.2 2 1 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|344211506|ref|YP_004795826.1| - 6.9e-09 35.3 0.0 1.3e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_8 PF13188.1 gi|344211506|ref|YP_004795826.1| - 5.1e-08 32.5 0.0 5.5e-07 29.2 0.0 2.5 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|344211506|ref|YP_004795826.1| - 2.6e-05 24.4 0.2 7.8e-05 22.8 0.1 1.9 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.1 gi|344211506|ref|YP_004795826.1| - 4.2e-05 23.3 0.1 0.00012 21.8 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|344211506|ref|YP_004795826.1| - 4.3e-05 23.6 0.0 0.00013 22.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|344211506|ref|YP_004795826.1| - 0.0011 18.5 0.1 0.0026 17.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|344211506|ref|YP_004795826.1| - 0.044 14.0 0.0 6.9 6.9 0.0 3.1 3 0 0 3 3 3 0 PAS domain CorA PF01544.13 gi|344211506|ref|YP_004795826.1| - 0.76 8.7 5.3 2.1 7.3 1.8 2.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Diphthamide_syn PF01866.12 gi|344211507|ref|YP_004795827.1| - 1.7e-94 316.5 0.0 2e-94 316.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF3529 PF12046.3 gi|344211507|ref|YP_004795827.1| - 0.18 10.8 0.0 0.29 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) MCPsignal PF00015.16 gi|344211508|ref|YP_004795828.1| - 4e-40 137.6 52.1 4.6e-38 130.9 23.7 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.19 gi|344211508|ref|YP_004795828.1| - 2e-14 53.3 0.0 9.5e-14 51.1 0.0 2.2 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|344211508|ref|YP_004795828.1| - 3.8e-12 46.2 0.1 2.4e-11 43.6 0.1 2.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|344211508|ref|YP_004795828.1| - 2.3e-10 40.7 0.6 1.3e-09 38.3 0.0 2.6 3 1 0 3 3 2 1 PAS domain Laminin_II PF06009.7 gi|344211508|ref|YP_004795828.1| - 3e-06 27.0 31.5 0.001 18.8 5.0 4.1 1 1 4 5 5 5 5 Laminin Domain II PAS_8 PF13188.1 gi|344211508|ref|YP_004795828.1| - 8.7e-06 25.4 0.0 3.3e-05 23.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain DUF948 PF06103.6 gi|344211508|ref|YP_004795828.1| - 0.00049 19.9 25.8 0.11 12.3 0.9 5.3 2 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.4 gi|344211508|ref|YP_004795828.1| - 0.00073 19.6 25.8 0.068 13.3 0.6 4.4 1 1 4 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Flagellar_rod PF05149.7 gi|344211508|ref|YP_004795828.1| - 0.0011 18.1 23.7 0.031 13.4 5.2 3.1 1 1 1 3 3 3 2 Paraflagellar rod protein CHASE3 PF05227.8 gi|344211508|ref|YP_004795828.1| - 0.0026 17.4 3.9 0.0026 17.4 2.7 4.2 1 1 0 3 3 2 1 CHASE3 domain PAS_7 PF12860.2 gi|344211508|ref|YP_004795828.1| - 0.0027 17.6 7.9 0.0035 17.3 0.0 4.1 3 2 2 5 5 5 1 PAS fold IncA PF04156.9 gi|344211508|ref|YP_004795828.1| - 0.0088 15.6 34.1 0.14 11.7 9.3 3.2 1 1 2 3 3 3 2 IncA protein HAUS6_N PF14661.1 gi|344211508|ref|YP_004795828.1| - 0.01 15.2 16.6 0.015 14.6 0.4 2.2 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus GAF_3 PF13492.1 gi|344211508|ref|YP_004795828.1| - 0.022 14.8 0.1 0.087 12.9 0.0 2.1 2 0 0 2 2 1 0 GAF domain Muted PF14942.1 gi|344211508|ref|YP_004795828.1| - 0.048 13.5 21.5 0.062 13.1 5.8 3.2 2 2 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF883 PF05957.8 gi|344211508|ref|YP_004795828.1| - 0.093 13.1 33.5 0.063 13.6 3.1 4.7 2 1 4 6 6 6 0 Bacterial protein of unknown function (DUF883) Alpha-2-MRAP_C PF06401.6 gi|344211508|ref|YP_004795828.1| - 0.1 12.4 14.9 7.4 6.3 3.1 3.3 1 1 2 3 3 3 0 Alpha-2-macroglobulin RAP, C-terminal domain ISG65-75 PF11727.3 gi|344211508|ref|YP_004795828.1| - 0.1 11.6 29.0 0.1 11.5 5.2 3.0 1 1 2 3 3 3 0 Invariant surface glycoprotein FH2 PF02181.18 gi|344211508|ref|YP_004795828.1| - 0.11 11.3 19.3 0.064 12.1 2.4 2.7 2 1 0 2 2 2 0 Formin Homology 2 Domain COG2 PF06148.6 gi|344211508|ref|YP_004795828.1| - 0.14 11.9 27.6 1.5 8.6 1.3 4.8 1 1 3 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 ApoO PF09769.4 gi|344211508|ref|YP_004795828.1| - 0.18 11.4 7.8 0.77 9.4 0.1 3.0 2 2 1 3 3 3 0 Apolipoprotein O AAA_27 PF13514.1 gi|344211508|ref|YP_004795828.1| - 0.18 9.4 36.2 0.25 8.9 25.1 1.2 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|344211508|ref|YP_004795828.1| - 0.2 11.4 27.4 1 9.1 0.7 4.4 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) Hemerythrin PF01814.18 gi|344211508|ref|YP_004795828.1| - 0.26 11.4 16.9 0.096 12.8 3.0 3.7 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain LXG PF04740.7 gi|344211508|ref|YP_004795828.1| - 0.34 10.6 29.4 0.14 11.9 3.8 3.5 1 1 3 4 4 4 0 LXG domain of WXG superfamily DUF812 PF05667.6 gi|344211508|ref|YP_004795828.1| - 0.4 9.1 36.9 0.065 11.7 14.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Sec5 PF15469.1 gi|344211508|ref|YP_004795828.1| - 0.61 9.7 14.9 1.3 8.7 6.7 3.0 1 1 1 2 2 2 0 Exocyst complex component Sec5 Lipoprotein_7 PF01540.11 gi|344211508|ref|YP_004795828.1| - 0.63 9.0 27.7 0.76 8.7 12.0 2.1 1 1 1 2 2 2 0 Adhesin lipoprotein APG17 PF04108.7 gi|344211508|ref|YP_004795828.1| - 0.66 8.7 23.7 0.61 8.8 4.5 3.3 1 1 1 3 3 3 0 Autophagy protein Apg17 TMP_2 PF06791.8 gi|344211508|ref|YP_004795828.1| - 0.72 9.4 25.6 0.5 9.9 3.9 3.3 1 1 2 3 3 3 0 Prophage tail length tape measure protein Toxin_52 PF15605.1 gi|344211508|ref|YP_004795828.1| - 0.76 9.7 7.0 0.44 10.4 0.1 3.2 3 1 0 3 3 2 0 Putative toxin 52 Spectrin PF00435.16 gi|344211508|ref|YP_004795828.1| - 0.83 9.9 27.3 0.26 11.5 5.0 4.0 2 2 3 5 5 5 0 Spectrin repeat Peptidase_C65 PF10275.4 gi|344211508|ref|YP_004795828.1| - 1.5 8.0 12.2 2.7 7.2 1.0 3.3 1 1 2 3 3 3 0 Peptidase C65 Otubain Syntaxin PF00804.20 gi|344211508|ref|YP_004795828.1| - 1.7 8.8 33.0 6.8 6.9 6.9 4.7 1 1 1 2 2 1 0 Syntaxin Mnd1 PF03962.10 gi|344211508|ref|YP_004795828.1| - 1.7 8.2 30.1 2.5 7.7 3.4 3.4 1 1 2 3 3 3 0 Mnd1 family DUF4200 PF13863.1 gi|344211508|ref|YP_004795828.1| - 1.8 8.5 25.4 0.053 13.4 2.2 3.6 2 2 0 2 2 2 0 Domain of unknown function (DUF4200) Prominin PF05478.6 gi|344211508|ref|YP_004795828.1| - 1.9 5.9 19.1 0.28 8.6 4.5 2.3 1 1 1 2 2 2 0 Prominin Fib_alpha PF08702.5 gi|344211508|ref|YP_004795828.1| - 2 8.5 19.9 0.71 9.9 4.2 3.4 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family AATF-Che1 PF13339.1 gi|344211508|ref|YP_004795828.1| - 2.1 8.4 19.6 1.6 8.8 2.2 3.4 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Spc7 PF08317.6 gi|344211508|ref|YP_004795828.1| - 2.4 6.7 27.5 1.5 7.4 6.0 2.7 1 1 1 2 2 2 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|344211508|ref|YP_004795828.1| - 2.7 5.7 23.7 12 3.6 16.5 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family NPV_P10 PF05531.7 gi|344211508|ref|YP_004795828.1| - 2.9 8.1 27.5 2 8.7 3.5 5.2 2 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Mod_r PF07200.8 gi|344211508|ref|YP_004795828.1| - 3.8 7.4 23.7 1.4 8.7 1.9 4.0 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Tweety PF04906.8 gi|344211508|ref|YP_004795828.1| - 3.9 5.7 17.4 0.091 11.1 2.7 3.1 1 1 4 5 5 5 0 Tweety Reo_sigmaC PF04582.7 gi|344211508|ref|YP_004795828.1| - 8.8 5.4 26.9 3.4 6.7 6.7 2.5 1 1 1 2 2 2 0 Reovirus sigma C capsid protein DUF3107 PF11305.3 gi|344211508|ref|YP_004795828.1| - 9.7 6.1 17.3 9.6 6.1 0.1 4.6 2 1 1 4 4 4 0 Protein of unknown function (DUF3107) DUF964 PF06133.6 gi|344211509|ref|YP_004795829.1| - 4.1e-22 78.2 10.1 4.6e-22 78.0 7.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) IncA PF04156.9 gi|344211509|ref|YP_004795829.1| - 0.79 9.2 6.0 1.1 8.8 4.1 1.3 1 0 0 1 1 1 0 IncA protein Usp PF00582.21 gi|344211510|ref|YP_004795830.1| - 4.1e-30 104.8 1.7 4.6e-30 104.6 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|344211510|ref|YP_004795830.1| - 0.087 12.9 0.9 0.13 12.3 0.6 1.4 1 1 0 1 1 1 0 von Willebrand factor type A domain Lactamase_B_2 PF12706.2 gi|344211511|ref|YP_004795831.1| - 5.9e-17 61.8 0.8 7.8e-17 61.4 0.6 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|344211511|ref|YP_004795831.1| - 5e-13 49.0 0.3 6.4e-13 48.7 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|344211511|ref|YP_004795831.1| - 0.027 14.1 10.8 0.37 10.4 7.5 2.4 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily DUF3038 PF11237.3 gi|344211511|ref|YP_004795831.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) NPV_P10 PF05531.7 gi|344211512|ref|YP_004795832.1| - 1.4e-06 28.4 4.5 0.023 14.9 0.5 3.3 2 1 1 3 3 3 2 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|344211512|ref|YP_004795832.1| - 4.4e-05 23.1 9.1 0.00013 21.6 5.3 2.1 1 1 1 2 2 2 1 IncA protein DUF4200 PF13863.1 gi|344211512|ref|YP_004795832.1| - 0.00019 21.3 1.8 0.023 14.6 0.2 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4200) CENP-F_leu_zip PF10473.4 gi|344211512|ref|YP_004795832.1| - 0.00019 21.2 11.1 0.0051 16.6 0.4 2.1 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.7 gi|344211512|ref|YP_004795832.1| - 0.00036 20.3 0.2 0.00071 19.3 0.2 1.6 1 0 0 1 1 1 1 Laminin Domain II Spc7 PF08317.6 gi|344211512|ref|YP_004795832.1| - 0.00041 19.1 1.7 0.00065 18.4 1.2 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein MAD PF05557.8 gi|344211512|ref|YP_004795832.1| - 0.0015 16.7 1.7 0.002 16.3 1.2 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein AAA_13 PF13166.1 gi|344211512|ref|YP_004795832.1| - 0.0017 16.9 1.2 0.0023 16.4 0.8 1.1 1 0 0 1 1 1 1 AAA domain NIT PF08376.5 gi|344211512|ref|YP_004795832.1| - 0.0019 17.7 4.0 0.0092 15.5 0.7 2.6 1 1 2 3 3 3 1 Nitrate and nitrite sensing LXG PF04740.7 gi|344211512|ref|YP_004795832.1| - 0.002 17.9 1.8 0.0034 17.2 1.2 1.4 1 1 0 1 1 1 1 LXG domain of WXG superfamily AAA_27 PF13514.1 gi|344211512|ref|YP_004795832.1| - 0.003 15.3 5.3 0.0039 14.9 3.7 1.1 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|344211512|ref|YP_004795832.1| - 0.0048 16.7 0.2 0.24 11.2 0.1 2.3 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus End3 PF12761.2 gi|344211512|ref|YP_004795832.1| - 0.0049 16.5 2.0 0.45 10.1 0.1 2.4 2 1 0 2 2 2 1 Actin cytoskeleton-regulatory complex protein END3 TBPIP PF07106.8 gi|344211512|ref|YP_004795832.1| - 0.0062 16.0 0.9 0.35 10.4 0.3 2.3 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF812 PF05667.6 gi|344211512|ref|YP_004795832.1| - 0.0072 14.8 2.8 0.0093 14.5 1.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Filament PF00038.16 gi|344211512|ref|YP_004795832.1| - 0.0082 15.6 3.9 0.025 14.0 2.5 1.8 1 1 0 1 1 1 1 Intermediate filament protein PspA_IM30 PF04012.7 gi|344211512|ref|YP_004795832.1| - 0.01 15.2 1.8 0.15 11.4 0.1 2.3 1 1 1 2 2 2 0 PspA/IM30 family DUF3829 PF12889.2 gi|344211512|ref|YP_004795832.1| - 0.011 14.9 1.5 0.018 14.2 0.6 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) DUF869 PF05911.6 gi|344211512|ref|YP_004795832.1| - 0.013 13.7 2.6 0.019 13.2 1.8 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF1664 PF07889.7 gi|344211512|ref|YP_004795832.1| - 0.014 15.1 2.7 0.099 12.4 0.1 2.7 1 1 1 3 3 2 0 Protein of unknown function (DUF1664) DUF3584 PF12128.3 gi|344211512|ref|YP_004795832.1| - 0.015 12.6 6.5 0.02 12.2 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Nsp1_C PF05064.8 gi|344211512|ref|YP_004795832.1| - 0.02 14.5 3.9 0.036 13.7 2.5 1.6 1 1 0 1 1 1 0 Nsp1-like C-terminal region Atg14 PF10186.4 gi|344211512|ref|YP_004795832.1| - 0.021 13.7 0.1 0.041 12.8 0.0 1.4 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Spectrin PF00435.16 gi|344211512|ref|YP_004795832.1| - 0.022 15.0 1.0 0.022 15.0 0.7 2.4 1 1 1 2 2 2 0 Spectrin repeat WEMBL PF05701.6 gi|344211512|ref|YP_004795832.1| - 0.027 12.9 2.7 0.04 12.3 1.9 1.4 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Tropomyosin_1 PF12718.2 gi|344211512|ref|YP_004795832.1| - 0.029 14.2 7.3 0.074 12.9 5.1 1.7 1 1 0 1 1 1 0 Tropomyosin like LPP PF04728.8 gi|344211512|ref|YP_004795832.1| - 0.029 14.1 0.4 0.029 14.1 0.3 3.8 4 1 1 5 5 3 0 Lipoprotein leucine-zipper Laminin_I PF06008.9 gi|344211512|ref|YP_004795832.1| - 0.031 13.5 2.6 0.052 12.8 1.7 1.5 1 1 0 1 1 1 0 Laminin Domain I Tropomyosin PF00261.15 gi|344211512|ref|YP_004795832.1| - 0.035 13.2 5.3 0.066 12.3 3.5 1.6 1 1 0 1 1 1 0 Tropomyosin Img2 PF05046.9 gi|344211512|ref|YP_004795832.1| - 0.039 14.1 0.0 2.2 8.5 0.0 2.6 3 0 0 3 3 2 0 Mitochondrial large subunit ribosomal protein (Img2) Reo_sigmaC PF04582.7 gi|344211512|ref|YP_004795832.1| - 0.039 13.1 1.8 0.056 12.6 0.5 1.6 1 1 0 2 2 2 0 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|344211512|ref|YP_004795832.1| - 0.039 13.7 5.0 0.051 13.3 0.3 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) PilJ PF13675.1 gi|344211512|ref|YP_004795832.1| - 0.042 14.1 2.4 0.2 11.9 0.6 2.6 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term EzrA PF06160.7 gi|344211512|ref|YP_004795832.1| - 0.044 11.9 2.1 0.067 11.3 1.5 1.3 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Prefoldin PF02996.12 gi|344211512|ref|YP_004795832.1| - 0.047 13.3 4.6 11 5.6 0.3 3.9 1 1 3 4 4 4 0 Prefoldin subunit RmuC PF02646.11 gi|344211512|ref|YP_004795832.1| - 0.049 12.4 0.1 0.85 8.4 0.0 2.2 2 1 0 2 2 2 0 RmuC family BLOC1_2 PF10046.4 gi|344211512|ref|YP_004795832.1| - 0.062 13.4 3.9 3.2 7.9 0.1 2.9 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ALIX_LYPXL_bnd PF13949.1 gi|344211512|ref|YP_004795832.1| - 0.07 12.0 5.4 0.11 11.4 3.7 1.4 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Syntaxin-6_N PF09177.6 gi|344211512|ref|YP_004795832.1| - 0.072 13.5 5.1 0.88 10.0 2.2 2.9 1 1 2 3 3 2 0 Syntaxin 6, N-terminal COG2 PF06148.6 gi|344211512|ref|YP_004795832.1| - 0.089 12.6 2.0 2.6 7.9 0.4 2.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HrpB7 PF09486.5 gi|344211512|ref|YP_004795832.1| - 0.12 12.3 5.8 6.3 6.7 0.1 3.1 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) DivIC PF04977.10 gi|344211512|ref|YP_004795832.1| - 0.12 11.9 9.5 3.8 7.0 0.0 4.1 3 1 1 4 4 3 0 Septum formation initiator FlxA PF14282.1 gi|344211512|ref|YP_004795832.1| - 0.12 12.3 3.7 1.5 8.8 0.9 2.4 2 0 0 2 2 2 0 FlxA-like protein DUF3450 PF11932.3 gi|344211512|ref|YP_004795832.1| - 0.15 11.2 4.2 0.65 9.2 1.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Med9 PF07544.8 gi|344211512|ref|YP_004795832.1| - 0.18 11.5 5.8 12 5.6 0.1 3.3 1 1 1 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 AAA_23 PF13476.1 gi|344211512|ref|YP_004795832.1| - 0.18 12.1 1.4 0.3 11.3 1.0 1.5 1 0 0 1 1 1 0 AAA domain DUF972 PF06156.8 gi|344211512|ref|YP_004795832.1| - 0.18 12.1 0.7 11 6.4 0.3 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF972) MscS_porin PF12795.2 gi|344211512|ref|YP_004795832.1| - 0.21 10.9 2.3 0.46 9.7 1.0 1.9 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain APG6 PF04111.7 gi|344211512|ref|YP_004795832.1| - 0.26 10.2 4.7 0.42 9.6 3.1 1.4 1 1 0 1 1 1 0 Autophagy protein Apg6 TPR_MLP1_2 PF07926.7 gi|344211512|ref|YP_004795832.1| - 0.32 10.7 3.1 1.1 9.0 1.8 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DivIVA PF05103.8 gi|344211512|ref|YP_004795832.1| - 0.33 10.9 6.6 0.71 9.9 0.3 2.7 3 0 0 3 3 2 0 DivIVA protein IFT57 PF10498.4 gi|344211512|ref|YP_004795832.1| - 0.34 9.6 5.2 1.2 7.7 3.6 1.8 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 FH2 PF02181.18 gi|344211512|ref|YP_004795832.1| - 0.34 9.7 1.4 5.4 5.7 0.6 2.0 1 1 1 2 2 2 0 Formin Homology 2 Domain LUC7 PF03194.10 gi|344211512|ref|YP_004795832.1| - 0.36 10.3 2.7 0.57 9.6 1.8 1.3 1 0 0 1 1 1 0 LUC7 N_terminus TMCO5 PF14992.1 gi|344211512|ref|YP_004795832.1| - 0.38 9.8 6.6 0.63 9.1 4.6 1.3 1 0 0 1 1 1 0 TMCO5 family FUSC PF04632.7 gi|344211512|ref|YP_004795832.1| - 0.45 8.8 2.2 0.52 8.6 0.7 1.5 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF4407 PF14362.1 gi|344211512|ref|YP_004795832.1| - 0.52 9.2 4.8 0.77 8.6 3.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1515 PF07439.6 gi|344211512|ref|YP_004795832.1| - 0.55 10.0 3.8 1.6 8.5 0.4 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF1515) Prefoldin_2 PF01920.15 gi|344211512|ref|YP_004795832.1| - 0.64 9.8 5.9 9.4 6.0 0.0 3.5 1 1 2 3 3 3 0 Prefoldin subunit Sipho_Gp157 PF05565.6 gi|344211512|ref|YP_004795832.1| - 0.82 9.2 5.2 4.7 6.7 3.2 2.2 1 1 0 1 1 1 0 Siphovirus Gp157 Cob_adeno_trans PF01923.13 gi|344211512|ref|YP_004795832.1| - 0.85 9.3 5.5 12 5.6 0.9 2.9 1 1 2 3 3 3 0 Cobalamin adenosyltransferase Cytochrom_B562 PF07361.6 gi|344211512|ref|YP_004795832.1| - 0.98 9.8 3.6 1.5 9.2 1.2 2.0 1 1 1 2 2 2 0 Cytochrome b562 Hemerythrin PF01814.18 gi|344211512|ref|YP_004795832.1| - 1.1 9.4 5.6 6.7 6.8 3.9 2.3 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain MerR-DNA-bind PF09278.6 gi|344211512|ref|YP_004795832.1| - 2.9 8.3 8.5 52 4.3 3.7 3.3 2 1 0 2 2 2 0 MerR, DNA binding HSBP1 PF06825.7 gi|344211512|ref|YP_004795832.1| - 3.7 7.1 8.4 7.1 6.2 0.2 3.2 2 1 0 2 2 2 0 Heat shock factor binding protein 1 Syntaxin PF00804.20 gi|344211512|ref|YP_004795832.1| - 4.5 7.4 7.1 60 3.8 4.4 2.7 1 1 0 1 1 1 0 Syntaxin SlyX PF04102.7 gi|344211512|ref|YP_004795832.1| - 4.8 7.6 6.4 8.6 6.8 0.2 3.4 2 1 2 4 4 3 0 SlyX CorA PF01544.13 gi|344211512|ref|YP_004795832.1| - 5.4 5.9 6.3 26 3.7 4.4 2.2 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein TMF_TATA_bd PF12325.3 gi|344211512|ref|YP_004795832.1| - 7 6.4 9.6 1.8 8.3 0.1 2.5 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding TMF_DNA_bd PF12329.3 gi|344211512|ref|YP_004795832.1| - 7.2 6.4 8.3 63 3.4 3.3 3.3 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding DUF4254 PF14063.1 gi|344211512|ref|YP_004795832.1| - 9.3 5.8 10.1 2.6 7.6 3.6 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF4254) HisG PF01634.13 gi|344211513|ref|YP_004795833.1| - 0.095 12.2 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 ATP phosphoribosyltransferase ABC2_membrane_2 PF12679.2 gi|344211514|ref|YP_004795834.1| - 6.7e-18 64.5 20.9 2.9e-17 62.4 14.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|344211514|ref|YP_004795834.1| - 0.00073 18.7 8.5 0.0013 17.9 5.9 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|344211514|ref|YP_004795834.1| - 0.0011 18.1 11.3 0.0015 17.7 7.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|344211514|ref|YP_004795834.1| - 0.41 9.6 10.2 0.055 12.4 4.3 1.5 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|344211515|ref|YP_004795835.1| - 3e-28 98.8 0.0 4.9e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211515|ref|YP_004795835.1| - 2.8e-11 43.9 0.0 2.4e-06 27.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|344211515|ref|YP_004795835.1| - 0.026 13.5 0.0 0.27 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|344211515|ref|YP_004795835.1| - 0.048 13.1 0.1 0.26 10.7 0.0 2.0 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF4162 PF13732.1 gi|344211515|ref|YP_004795835.1| - 0.066 13.7 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_22 PF13401.1 gi|344211515|ref|YP_004795835.1| - 0.079 13.0 0.0 0.38 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|344211515|ref|YP_004795835.1| - 0.16 9.3 0.4 0.21 8.9 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|344211515|ref|YP_004795835.1| - 0.16 10.3 0.1 0.23 9.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain NosD PF05048.8 gi|344211516|ref|YP_004795836.1| - 6.4e-51 172.7 20.4 4.7e-46 156.8 11.9 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|344211516|ref|YP_004795836.1| - 1.6e-23 83.1 24.4 2.6e-18 66.2 6.3 2.6 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|344211516|ref|YP_004795836.1| - 2.3e-07 30.2 14.0 0.0016 17.6 4.4 2.3 1 1 0 2 2 2 2 Protein of unknown function (DUF1565) COX2 PF00116.15 gi|344211518|ref|YP_004795838.1| - 5.4e-15 55.2 0.1 1e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|344211518|ref|YP_004795838.1| - 0.00018 21.3 0.0 0.0004 20.2 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|344211518|ref|YP_004795838.1| - 0.00021 21.0 3.8 0.00036 20.3 2.7 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.15 gi|344211519|ref|YP_004795839.1| - 5e-20 71.5 0.3 9.3e-20 70.7 0.2 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|344211519|ref|YP_004795839.1| - 9.1e-07 28.7 1.1 1.4e-05 24.9 0.8 2.0 1 1 0 1 1 1 1 Cupredoxin-like domain Cu-oxidase_3 PF07732.10 gi|344211519|ref|YP_004795839.1| - 0.11 12.2 0.3 0.21 11.3 0.1 1.6 2 0 0 2 2 2 0 Multicopper oxidase TAT_signal PF10518.4 gi|344211519|ref|YP_004795839.1| - 0.18 11.8 6.0 0.34 11.0 4.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Secretin_N_2 PF07655.8 gi|344211519|ref|YP_004795839.1| - 0.34 11.3 6.9 0.44 10.9 3.5 1.9 2 0 0 2 2 2 0 Secretin N-terminal domain Period_C PF12114.3 gi|344211519|ref|YP_004795839.1| - 3 7.4 4.3 4.1 6.9 3.0 1.2 1 0 0 1 1 1 0 Period protein 2/3C-terminal region IclR PF01614.13 gi|344211521|ref|YP_004795841.1| - 1.6e-35 121.6 0.1 3.1e-35 120.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344211521|ref|YP_004795841.1| - 7.6e-09 35.0 0.1 2.6e-08 33.3 0.0 2.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344211521|ref|YP_004795841.1| - 7.1e-05 22.1 0.1 0.00027 20.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344211521|ref|YP_004795841.1| - 0.00012 21.6 0.0 0.00026 20.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Cache_3 PF14827.1 gi|344211521|ref|YP_004795841.1| - 0.001 18.9 0.2 0.042 13.7 0.0 2.6 2 1 0 2 2 2 1 Sensory domain of two-component sensor kinase DUF4423 PF14394.1 gi|344211521|ref|YP_004795841.1| - 0.0013 18.3 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.7 gi|344211521|ref|YP_004795841.1| - 0.0021 17.6 0.3 0.012 15.2 0.0 2.4 4 0 0 4 4 4 1 HTH domain MarR PF01047.17 gi|344211521|ref|YP_004795841.1| - 0.005 16.5 0.1 0.04 13.6 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|344211521|ref|YP_004795841.1| - 0.02 14.6 0.2 0.1 12.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|344211521|ref|YP_004795841.1| - 0.026 14.3 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|344211521|ref|YP_004795841.1| - 0.03 14.0 0.0 0.11 12.1 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|344211521|ref|YP_004795841.1| - 0.033 14.2 0.0 0.096 12.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.5 gi|344211521|ref|YP_004795841.1| - 0.043 13.5 0.0 0.08 12.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF1803 PF08820.5 gi|344211521|ref|YP_004795841.1| - 0.051 13.2 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) HTH_Mga PF08280.6 gi|344211521|ref|YP_004795841.1| - 0.067 12.9 0.2 0.12 12.1 0.2 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain PadR PF03551.9 gi|344211521|ref|YP_004795841.1| - 0.079 12.7 0.0 0.22 11.3 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family XH PF03469.9 gi|344211521|ref|YP_004795841.1| - 0.17 11.5 0.6 0.61 9.7 0.1 2.0 2 0 0 2 2 2 0 XH domain ELFV_dehydrog PF00208.16 gi|344211522|ref|YP_004795842.1| - 8.5e-71 238.3 0.4 1.8e-70 237.2 0.3 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|344211522|ref|YP_004795842.1| - 1.3e-48 163.8 0.0 2.1e-48 163.2 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|344211522|ref|YP_004795842.1| - 0.001 18.2 0.1 0.0021 17.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|344211522|ref|YP_004795842.1| - 0.016 12.6 0.0 0.022 12.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AlaDh_PNT_C PF01262.16 gi|344211522|ref|YP_004795842.1| - 0.037 13.5 1.4 0.042 13.3 0.1 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|344211522|ref|YP_004795842.1| - 1 9.2 3.2 0.97 9.2 0.9 1.9 2 0 0 2 2 2 0 ThiF family Arginase PF00491.16 gi|344211523|ref|YP_004795843.1| - 1.4e-73 247.5 5.0 1.7e-73 247.3 3.4 1.0 1 0 0 1 1 1 1 Arginase family Aminotran_3 PF00202.16 gi|344211524|ref|YP_004795844.1| - 1.7e-68 230.9 0.0 6.5e-68 229.0 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-III Beta_elim_lyase PF01212.16 gi|344211524|ref|YP_004795844.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase SBP_bac_3 PF00497.15 gi|344211525|ref|YP_004795845.1| - 3.8e-57 193.1 0.0 4.3e-57 192.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|344211525|ref|YP_004795845.1| - 0.00031 20.4 0.1 0.0049 16.4 0.0 2.0 2 0 0 2 2 2 1 NMT1/THI5 like BPD_transp_1 PF00528.17 gi|344211526|ref|YP_004795846.1| - 4.8e-21 75.1 7.1 4.8e-21 75.1 4.9 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MNHE PF01899.11 gi|344211526|ref|YP_004795846.1| - 0.049 13.2 4.1 0.026 14.1 1.0 1.9 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit DUF2628 PF10947.3 gi|344211526|ref|YP_004795846.1| - 3.4 7.4 8.4 0.72 9.6 3.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) ABC_tran PF00005.22 gi|344211527|ref|YP_004795847.1| - 2.2e-34 118.6 0.0 3.1e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211527|ref|YP_004795847.1| - 4.7e-16 59.6 0.0 1.5e-08 34.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344211527|ref|YP_004795847.1| - 6.8e-09 35.2 0.0 3.1e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344211527|ref|YP_004795847.1| - 4e-06 26.2 0.0 8.5e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344211527|ref|YP_004795847.1| - 3.3e-05 23.9 2.0 0.00024 21.1 1.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|344211527|ref|YP_004795847.1| - 4.5e-05 22.2 0.5 0.047 12.2 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|344211527|ref|YP_004795847.1| - 0.00022 20.7 0.1 0.025 14.0 0.1 2.1 1 1 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|344211527|ref|YP_004795847.1| - 0.00023 20.3 0.1 0.00034 19.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|344211527|ref|YP_004795847.1| - 0.00033 20.7 0.0 0.00086 19.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344211527|ref|YP_004795847.1| - 0.00052 19.4 0.9 0.021 14.2 0.6 2.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344211527|ref|YP_004795847.1| - 0.0017 18.7 0.0 0.0039 17.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|344211527|ref|YP_004795847.1| - 0.0037 16.9 0.2 0.0089 15.7 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain AAA_15 PF13175.1 gi|344211527|ref|YP_004795847.1| - 0.0049 15.9 0.0 0.12 11.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|344211527|ref|YP_004795847.1| - 0.0058 16.2 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344211527|ref|YP_004795847.1| - 0.0058 16.5 0.0 0.01 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|344211527|ref|YP_004795847.1| - 0.0087 16.3 0.0 0.02 15.1 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|344211527|ref|YP_004795847.1| - 0.017 15.2 0.0 0.099 12.8 0.0 2.4 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.14 gi|344211527|ref|YP_004795847.1| - 0.021 14.2 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|344211527|ref|YP_004795847.1| - 0.023 15.5 0.3 0.063 14.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|344211527|ref|YP_004795847.1| - 0.028 14.3 1.1 0.21 11.5 0.2 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|344211527|ref|YP_004795847.1| - 0.031 13.9 0.0 0.057 13.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase TK PF00265.13 gi|344211527|ref|YP_004795847.1| - 0.031 13.8 0.0 4.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Thymidine kinase AAA_5 PF07728.9 gi|344211527|ref|YP_004795847.1| - 0.042 13.5 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|344211527|ref|YP_004795847.1| - 0.068 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|344211527|ref|YP_004795847.1| - 0.088 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.1 gi|344211527|ref|YP_004795847.1| - 0.095 12.6 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|344211527|ref|YP_004795847.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 APS_kinase PF01583.15 gi|344211527|ref|YP_004795847.1| - 0.13 11.9 0.0 0.31 10.6 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase BPD_transp_1 PF00528.17 gi|344211528|ref|YP_004795848.1| - 4.8e-17 62.0 7.7 4.8e-17 62.0 5.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_10 PF04967.7 gi|344211529|ref|YP_004795849.1| - 6.1e-20 70.5 0.1 1e-19 69.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|344211529|ref|YP_004795849.1| - 0.0026 17.1 0.0 0.0046 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344211529|ref|YP_004795849.1| - 0.019 14.5 0.1 0.85 9.2 0.0 3.0 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|344211529|ref|YP_004795849.1| - 0.022 14.2 0.1 0.053 13.0 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|344211529|ref|YP_004795849.1| - 0.025 14.3 0.0 0.088 12.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|344211529|ref|YP_004795849.1| - 0.028 14.1 0.1 0.08 12.6 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_psq PF05225.11 gi|344211529|ref|YP_004795849.1| - 0.031 13.8 0.2 0.084 12.4 0.0 1.8 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_11 PF08279.7 gi|344211529|ref|YP_004795849.1| - 0.034 13.8 0.0 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|344211529|ref|YP_004795849.1| - 0.055 12.9 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.7 gi|344211529|ref|YP_004795849.1| - 0.088 12.2 0.1 1.2 8.6 0.1 2.3 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|344211529|ref|YP_004795849.1| - 0.1 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family IF2_N PF04760.10 gi|344211529|ref|YP_004795849.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region GerE PF00196.14 gi|344211529|ref|YP_004795849.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Phage_integrase PF00589.17 gi|344211530|ref|YP_004795850.1| - 4.9e-19 68.6 0.0 7.8e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|344211530|ref|YP_004795850.1| - 7.1e-09 35.7 0.0 2.2e-08 34.1 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|344211530|ref|YP_004795850.1| - 3.2e-06 27.3 0.0 7e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain RHH_1 PF01402.16 gi|344211531|ref|YP_004795851.1| - 0.021 14.7 0.4 0.4 10.6 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family RsbRD_N PF14361.1 gi|344211531|ref|YP_004795851.1| - 0.14 12.6 0.5 13 6.3 0.1 2.1 1 1 1 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain UNC-50 PF05216.8 gi|344211532|ref|YP_004795852.1| - 0.072 12.2 0.8 0.076 12.2 0.6 1.0 1 0 0 1 1 1 0 UNC-50 family DUF2621 PF11084.3 gi|344211532|ref|YP_004795852.1| - 0.17 11.5 1.4 0.17 11.5 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) Glycophorin_A PF01102.13 gi|344211532|ref|YP_004795852.1| - 0.31 10.8 1.7 0.33 10.7 1.2 1.0 1 0 0 1 1 1 0 Glycophorin A RELT PF12606.3 gi|344211532|ref|YP_004795852.1| - 2.4 7.3 4.6 2.9 7.0 3.2 1.1 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 ERM PF00769.14 gi|344211534|ref|YP_004795854.1| - 0.013 15.0 2.0 0.016 14.7 1.4 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family HemY_N PF07219.8 gi|344211534|ref|YP_004795854.1| - 0.021 14.3 0.3 0.055 13.0 0.1 1.7 1 1 1 2 2 2 0 HemY protein N-terminus Phage_term_smal PF05944.7 gi|344211534|ref|YP_004795854.1| - 0.044 13.4 0.0 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 Phage small terminase subunit ArdA PF07275.6 gi|344211534|ref|YP_004795854.1| - 0.063 13.5 1.7 0.11 12.7 1.0 1.5 1 1 0 1 1 1 0 Antirestriction protein (ArdA) Opi1 PF08618.5 gi|344211534|ref|YP_004795854.1| - 0.066 12.1 0.3 0.081 11.8 0.2 1.1 1 0 0 1 1 1 0 Transcription factor Opi1 Spectrin PF00435.16 gi|344211534|ref|YP_004795854.1| - 0.31 11.3 2.6 0.49 10.7 1.2 1.7 1 1 1 2 2 2 0 Spectrin repeat Seryl_tRNA_N PF02403.17 gi|344211534|ref|YP_004795854.1| - 1.1 9.3 4.2 7.9 6.5 0.5 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CP12 PF02672.10 gi|344211534|ref|YP_004795854.1| - 9 6.8 7.5 5.7 7.4 2.5 2.2 1 1 1 2 2 2 0 CP12 domain HAMP PF00672.20 gi|344211535|ref|YP_004795855.1| - 1.3e-09 38.0 3.3 2.4e-08 34.0 0.2 3.8 4 1 0 4 4 4 2 HAMP domain IncA PF04156.9 gi|344211535|ref|YP_004795855.1| - 0.00098 18.7 18.8 0.017 14.7 4.6 3.4 2 1 1 3 3 3 2 IncA protein DUF3366 PF11846.3 gi|344211535|ref|YP_004795855.1| - 0.013 15.3 2.1 0.15 11.8 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3366) MCPsignal PF00015.16 gi|344211535|ref|YP_004795855.1| - 0.014 14.9 1.2 0.014 14.9 0.8 3.6 4 1 1 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|344211535|ref|YP_004795855.1| - 0.063 13.0 0.3 0.063 13.0 0.2 3.8 2 1 3 5 5 5 0 Laminin Domain II AAA_13 PF13166.1 gi|344211535|ref|YP_004795855.1| - 0.71 8.2 12.5 0.32 9.4 4.8 1.9 1 1 1 2 2 2 0 AAA domain CorA PF01544.13 gi|344211535|ref|YP_004795855.1| - 1.6 7.6 11.9 0.44 9.5 1.6 3.0 1 1 0 2 2 2 0 CorA-like Mg2+ transporter protein ISG65-75 PF11727.3 gi|344211535|ref|YP_004795855.1| - 1.8 7.5 17.8 0.22 10.5 3.3 2.8 1 1 2 3 3 3 0 Invariant surface glycoprotein DUF948 PF06103.6 gi|344211535|ref|YP_004795855.1| - 1.9 8.3 11.6 0.84 9.5 0.1 4.1 1 1 4 5 5 5 0 Bacterial protein of unknown function (DUF948) Peripla_BP_6 PF13458.1 gi|344211536|ref|YP_004795856.1| - 1.8e-55 188.6 5.3 2.2e-55 188.3 3.6 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344211536|ref|YP_004795856.1| - 5.1e-21 74.8 0.1 7.2e-21 74.3 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|344211536|ref|YP_004795856.1| - 3.8e-07 29.2 0.2 9.9e-07 27.8 0.1 1.6 1 1 0 1 1 1 1 Receptor family ligand binding region Lipase_GDSL_2 PF13472.1 gi|344211536|ref|YP_004795856.1| - 0.0074 16.4 3.5 0.31 11.1 0.4 2.3 1 1 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family ABC_sub_bind PF04392.7 gi|344211536|ref|YP_004795856.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 ABC transporter substrate binding protein PfkB PF00294.19 gi|344211537|ref|YP_004795857.1| - 2.1e-40 138.7 0.3 2.3e-40 138.5 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PK PF00224.16 gi|344211538|ref|YP_004795858.1| - 1e-113 379.5 4.6 1.9e-113 378.6 3.2 1.4 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|344211538|ref|YP_004795858.1| - 4.1e-32 110.1 1.6 8.8e-32 109.1 1.1 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|344211538|ref|YP_004795858.1| - 6e-15 54.5 2.9 2.9e-14 52.3 0.1 3.4 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|344211538|ref|YP_004795858.1| - 0.017 14.0 1.7 0.063 12.1 0.9 2.0 1 1 1 2 2 2 0 HpcH/HpaI aldolase/citrate lyase family ROK PF00480.15 gi|344211539|ref|YP_004795859.1| - 7.8e-35 120.3 0.2 1e-34 119.9 0.1 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|344211539|ref|YP_004795859.1| - 2.8e-05 23.5 0.1 6.2e-05 22.4 0.0 1.6 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|344211539|ref|YP_004795859.1| - 9.9e-05 21.7 0.1 0.00033 20.0 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain AAA_16 PF13191.1 gi|344211540|ref|YP_004795860.1| - 1.5e-12 47.9 0.5 1e-11 45.1 0.1 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344211540|ref|YP_004795860.1| - 2.3e-07 31.0 0.0 6.8e-07 29.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344211540|ref|YP_004795860.1| - 0.00014 21.3 0.0 0.045 13.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|344211540|ref|YP_004795860.1| - 0.00023 20.9 0.0 0.00045 19.9 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|344211540|ref|YP_004795860.1| - 0.034 13.0 0.0 0.076 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|344211540|ref|YP_004795860.1| - 0.057 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA PF00004.24 gi|344211540|ref|YP_004795860.1| - 0.074 13.2 0.0 0.18 11.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|344211540|ref|YP_004795860.1| - 0.091 11.9 0.0 0.17 11.1 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain PIGA PF08288.7 gi|344211540|ref|YP_004795860.1| - 0.1 12.9 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 PIGA (GPI anchor biosynthesis) AAA_29 PF13555.1 gi|344211540|ref|YP_004795860.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|344211540|ref|YP_004795860.1| - 0.16 11.8 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain FGGY_N PF00370.16 gi|344211542|ref|YP_004795862.1| - 7.5e-67 225.1 0.0 1e-66 224.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|344211542|ref|YP_004795862.1| - 1e-57 194.9 2.0 1.6e-57 194.3 1.4 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain MCPsignal PF00015.16 gi|344211543|ref|YP_004795863.1| - 1.1e-46 159.1 45.1 2.2e-44 151.5 20.6 2.9 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.1 gi|344211543|ref|YP_004795863.1| - 4.9e-43 147.8 0.1 5.5e-42 144.4 0.0 2.3 2 1 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344211543|ref|YP_004795863.1| - 6e-21 75.4 0.0 9.1e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF948 PF06103.6 gi|344211543|ref|YP_004795863.1| - 0.00069 19.4 2.6 0.00069 19.4 1.8 4.5 3 2 2 5 5 5 1 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|344211543|ref|YP_004795863.1| - 0.00087 19.0 20.3 0.041 13.6 0.3 4.5 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Lzipper-MIP1 PF14389.1 gi|344211543|ref|YP_004795863.1| - 0.0056 16.7 0.7 0.034 14.2 0.0 2.7 2 0 0 2 2 1 1 Leucine-zipper of ternary complex factor MIP1 DUF2959 PF11172.3 gi|344211543|ref|YP_004795863.1| - 0.0076 16.0 5.5 0.0076 16.0 3.8 3.6 2 1 1 3 3 3 1 Protein of unknown function (DUF2959) Prp19 PF08606.6 gi|344211543|ref|YP_004795863.1| - 0.008 15.8 0.3 0.037 13.7 0.1 2.2 2 0 0 2 2 1 1 Prp19/Pso4-like Med9 PF07544.8 gi|344211543|ref|YP_004795863.1| - 0.016 14.8 0.0 0.016 14.8 0.0 3.0 3 1 0 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 Seryl_tRNA_N PF02403.17 gi|344211543|ref|YP_004795863.1| - 0.035 14.1 22.5 0.026 14.5 1.2 4.8 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF4559 PF15112.1 gi|344211543|ref|YP_004795863.1| - 0.041 13.0 13.1 0.055 12.6 0.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4559) Filament PF00038.16 gi|344211543|ref|YP_004795863.1| - 0.058 12.8 24.2 0.087 12.2 4.2 3.4 2 2 0 2 2 2 0 Intermediate filament protein IFT57 PF10498.4 gi|344211543|ref|YP_004795863.1| - 0.088 11.5 14.6 0.018 13.8 0.4 2.8 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 BLOC1_2 PF10046.4 gi|344211543|ref|YP_004795863.1| - 0.34 11.0 21.6 2.1 8.5 1.7 5.5 4 1 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|344211543|ref|YP_004795863.1| - 0.44 9.4 9.9 2.7 6.8 0.4 3.4 3 1 1 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_II PF06009.7 gi|344211543|ref|YP_004795863.1| - 0.67 9.7 32.4 0.5 10.1 2.1 4.6 3 2 2 5 5 5 0 Laminin Domain II Vps51 PF08700.6 gi|344211543|ref|YP_004795863.1| - 0.69 9.7 12.7 4.3 7.2 0.2 5.0 5 1 0 5 5 5 0 Vps51/Vps67 APG6 PF04111.7 gi|344211543|ref|YP_004795863.1| - 0.73 8.8 20.4 0.44 9.5 0.0 3.6 2 1 2 4 4 4 0 Autophagy protein Apg6 Laminin_I PF06008.9 gi|344211543|ref|YP_004795863.1| - 0.74 9.0 28.7 0.76 9.0 2.1 4.6 3 2 1 4 4 4 0 Laminin Domain I Ferritin PF00210.19 gi|344211543|ref|YP_004795863.1| - 2.3 7.9 7.9 0.51 10.0 1.0 2.5 1 1 1 2 2 2 0 Ferritin-like domain TBPIP PF07106.8 gi|344211543|ref|YP_004795863.1| - 3 7.3 16.7 5.4 6.5 0.0 4.3 3 2 1 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|344211543|ref|YP_004795863.1| - 4.2 5.6 23.0 0.12 10.8 3.9 2.5 2 1 1 3 3 3 0 AAA domain BAR_2 PF10455.4 gi|344211543|ref|YP_004795863.1| - 4.3 6.1 13.3 0.34 9.7 0.2 2.7 3 0 0 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Spc7 PF08317.6 gi|344211543|ref|YP_004795863.1| - 4.3 5.9 17.0 1.1 7.7 4.0 2.8 1 1 0 2 2 2 0 Spc7 kinetochore protein Syntaxin-6_N PF09177.6 gi|344211543|ref|YP_004795863.1| - 4.4 7.7 25.6 0.2 12.0 3.4 4.9 4 2 2 6 6 5 0 Syntaxin 6, N-terminal Baculo_PEP_C PF04513.7 gi|344211543|ref|YP_004795863.1| - 4.7 7.0 27.2 1.7 8.4 0.1 5.2 3 1 2 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|344211543|ref|YP_004795863.1| - 5 7.4 29.3 10 6.4 0.1 6.4 5 1 2 7 7 7 0 Nucleopolyhedrovirus P10 protein MutS_III PF05192.13 gi|344211543|ref|YP_004795863.1| - 5.5 6.7 13.5 5.5 6.7 5.9 3.0 1 1 1 2 2 2 0 MutS domain III Sec5 PF15469.1 gi|344211543|ref|YP_004795863.1| - 6 6.5 8.4 13 5.5 3.7 2.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 DUF4200 PF13863.1 gi|344211543|ref|YP_004795863.1| - 7.5 6.5 16.4 11 5.9 0.2 4.6 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) TMPIT PF07851.8 gi|344211543|ref|YP_004795863.1| - 8.6 5.3 5.6 22 4.0 0.1 2.3 2 0 0 2 2 2 0 TMPIT-like protein IncA PF04156.9 gi|344211543|ref|YP_004795863.1| - 8.7 5.8 23.2 4.4 6.8 0.3 4.1 1 1 1 3 3 3 0 IncA protein Fib_alpha PF08702.5 gi|344211543|ref|YP_004795863.1| - 9.9 6.2 11.5 37 4.4 0.6 3.6 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family DAO PF01266.19 gi|344211544|ref|YP_004795864.1| - 1.2e-63 215.2 0.6 1.7e-63 214.7 0.4 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344211544|ref|YP_004795864.1| - 3e-09 37.0 0.2 0.0014 18.5 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer2_BFD PF04324.10 gi|344211544|ref|YP_004795864.1| - 6.6e-09 35.6 0.7 1.9e-08 34.2 0.5 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.19 gi|344211544|ref|YP_004795864.1| - 8.8e-09 34.6 6.1 1.5e-07 30.6 4.2 2.1 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|344211544|ref|YP_004795864.1| - 0.00019 21.1 0.2 0.00034 20.2 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|344211544|ref|YP_004795864.1| - 0.00025 20.2 7.4 0.0027 16.7 5.1 2.1 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|344211544|ref|YP_004795864.1| - 0.0005 19.2 7.9 0.00055 19.1 3.7 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|344211544|ref|YP_004795864.1| - 0.0013 18.8 0.1 0.94 9.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|344211544|ref|YP_004795864.1| - 0.0024 17.8 1.3 0.0086 16.0 0.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|344211544|ref|YP_004795864.1| - 0.012 15.9 2.5 0.017 15.4 0.4 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344211544|ref|YP_004795864.1| - 0.032 14.0 2.7 3.8 7.2 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding ApbA PF02558.11 gi|344211544|ref|YP_004795864.1| - 0.07 12.5 0.3 0.15 11.4 0.2 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.12 gi|344211544|ref|YP_004795864.1| - 0.12 11.4 1.9 0.98 8.4 0.1 2.2 2 0 0 2 2 2 0 Thi4 family F420_oxidored PF03807.12 gi|344211544|ref|YP_004795864.1| - 0.13 12.7 0.6 0.31 11.5 0.4 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent HI0933_like PF03486.9 gi|344211544|ref|YP_004795864.1| - 0.18 10.2 1.3 0.33 9.3 0.2 1.8 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_10 PF13460.1 gi|344211544|ref|YP_004795864.1| - 0.18 11.8 3.8 0.22 11.5 0.7 2.5 3 0 0 3 3 3 0 NADH(P)-binding GIDA PF01134.17 gi|344211544|ref|YP_004795864.1| - 0.31 9.8 3.4 2.1 7.1 1.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|344211545|ref|YP_004795865.1| - 3.4e-39 134.8 0.2 3.9e-39 134.6 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|344211545|ref|YP_004795865.1| - 7.5e-08 31.6 1.2 0.0033 16.4 0.9 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|344211545|ref|YP_004795865.1| - 1.3e-07 31.0 0.7 5.6e-06 25.6 0.6 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344211545|ref|YP_004795865.1| - 1.8e-05 24.7 0.0 0.0014 18.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|344211545|ref|YP_004795865.1| - 3.9e-05 22.7 2.6 4.3e-05 22.5 0.3 2.2 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|344211545|ref|YP_004795865.1| - 8.1e-05 21.2 0.1 0.021 13.2 0.1 2.3 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|344211545|ref|YP_004795865.1| - 0.0016 17.5 0.2 0.0052 15.8 0.5 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|344211545|ref|YP_004795865.1| - 0.003 17.9 0.4 0.0095 16.3 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|344211545|ref|YP_004795865.1| - 0.006 16.5 0.9 0.015 15.2 0.6 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|344211545|ref|YP_004795865.1| - 0.04 13.5 0.3 0.063 12.9 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|344211545|ref|YP_004795865.1| - 0.073 13.3 0.0 0.18 12.0 0.0 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding CCG PF02754.11 gi|344211546|ref|YP_004795866.1| - 8.5e-22 76.9 1.9 1.6e-10 40.8 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|344211546|ref|YP_004795866.1| - 1.5e-07 31.3 7.3 1.5e-07 31.3 5.1 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|344211546|ref|YP_004795866.1| - 3.1e-06 27.4 7.6 3.1e-06 27.4 5.2 3.6 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|344211546|ref|YP_004795866.1| - 1.9e-05 24.9 7.6 0.0048 17.2 0.3 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344211546|ref|YP_004795866.1| - 6.5e-05 23.1 15.2 0.001 19.3 8.1 3.6 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344211546|ref|YP_004795866.1| - 0.0006 20.1 10.3 0.0006 20.1 7.2 2.8 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344211546|ref|YP_004795866.1| - 0.016 14.9 20.4 0.024 14.4 9.9 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344211546|ref|YP_004795866.1| - 0.019 15.7 15.6 0.069 13.9 7.8 3.6 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain DUF3390 PF11870.3 gi|344211546|ref|YP_004795866.1| - 0.03 14.2 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_21 PF14697.1 gi|344211546|ref|YP_004795866.1| - 0.25 11.2 13.4 0.46 10.3 0.7 3.4 4 0 0 4 4 4 0 4Fe-4S dicluster domain Usp PF00582.21 gi|344211547|ref|YP_004795867.1| - 1.7e-19 70.4 0.7 1.9e-19 70.2 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family PEPcase PF00311.12 gi|344211548|ref|YP_004795868.1| - 1.7e-241 803.3 0.2 2.2e-241 803.0 0.2 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|344211548|ref|YP_004795868.1| - 0.00017 20.0 0.0 0.00041 18.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.3 gi|344211548|ref|YP_004795868.1| - 0.032 13.7 0.3 0.14 11.6 0.2 2.1 1 0 0 1 1 1 0 Transcriptional activator TraM HTH_10 PF04967.7 gi|344211549|ref|YP_004795869.1| - 6.6e-17 60.8 0.0 1.2e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344211549|ref|YP_004795869.1| - 0.0089 15.6 0.1 0.033 13.8 0.0 2.0 2 0 0 2 2 2 1 MarR family UPF0122 PF04297.9 gi|344211549|ref|YP_004795869.1| - 0.072 13.1 0.0 0.25 11.3 0.0 1.8 1 1 1 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_24 PF13412.1 gi|344211549|ref|YP_004795869.1| - 0.1 12.0 0.0 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344211549|ref|YP_004795869.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Peripla_BP_6 PF13458.1 gi|344211551|ref|YP_004795871.1| - 6.4e-62 209.8 11.5 8.4e-62 209.5 8.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344211551|ref|YP_004795871.1| - 3e-17 62.4 1.3 5e-17 61.6 0.9 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.22 gi|344211552|ref|YP_004795872.1| - 2.2e-26 92.8 0.0 2.8e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|344211552|ref|YP_004795872.1| - 5.9e-11 41.7 0.6 1.6e-10 40.3 0.3 1.9 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|344211552|ref|YP_004795872.1| - 5.3e-08 33.1 0.6 7.5e-06 26.1 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344211552|ref|YP_004795872.1| - 2e-05 25.0 0.0 2.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344211552|ref|YP_004795872.1| - 8.1e-05 22.7 0.5 0.0027 17.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344211552|ref|YP_004795872.1| - 0.0002 20.6 0.0 0.00029 20.1 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|344211552|ref|YP_004795872.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|344211552|ref|YP_004795872.1| - 0.0026 17.6 0.0 0.0053 16.7 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|344211552|ref|YP_004795872.1| - 0.004 16.6 0.1 0.0076 15.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344211552|ref|YP_004795872.1| - 0.026 14.5 0.5 0.047 13.6 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|344211552|ref|YP_004795872.1| - 0.074 12.9 0.3 0.12 12.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|344211552|ref|YP_004795872.1| - 0.11 12.6 0.2 0.9 9.7 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|344211553|ref|YP_004795873.1| - 3.8e-29 101.7 0.0 5e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211553|ref|YP_004795873.1| - 1.1e-07 32.1 0.0 0.0016 18.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344211553|ref|YP_004795873.1| - 0.0017 17.8 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|344211553|ref|YP_004795873.1| - 0.014 15.5 0.1 0.034 14.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|344211553|ref|YP_004795873.1| - 0.018 13.9 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.1 gi|344211553|ref|YP_004795873.1| - 0.033 14.1 0.3 0.059 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|344211553|ref|YP_004795873.1| - 0.036 13.4 0.3 0.32 10.3 0.0 2.5 2 1 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|344211553|ref|YP_004795873.1| - 0.037 13.6 0.0 0.064 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|344211553|ref|YP_004795873.1| - 0.038 13.6 0.1 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.10 gi|344211553|ref|YP_004795873.1| - 0.04 13.6 0.0 0.55 9.9 0.0 2.1 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|344211553|ref|YP_004795873.1| - 0.052 12.4 0.0 0.069 12.0 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|344211553|ref|YP_004795873.1| - 0.054 13.0 0.2 0.54 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|344211553|ref|YP_004795873.1| - 0.059 13.6 0.0 0.078 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|344211553|ref|YP_004795873.1| - 0.064 12.4 0.1 7.7 5.6 0.0 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF3584 PF12128.3 gi|344211553|ref|YP_004795873.1| - 0.098 9.9 0.2 0.13 9.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4261 PF14080.1 gi|344211553|ref|YP_004795873.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4261) DUF258 PF03193.11 gi|344211553|ref|YP_004795873.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|344211553|ref|YP_004795873.1| - 0.14 11.6 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family BPD_transp_2 PF02653.11 gi|344211554|ref|YP_004795874.1| - 1.6e-36 125.6 40.7 1.8e-36 125.4 28.2 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF485 PF04341.7 gi|344211554|ref|YP_004795874.1| - 0.012 15.3 0.5 0.012 15.3 0.3 4.6 4 2 2 6 6 6 0 Protein of unknown function, DUF485 BPD_transp_2 PF02653.11 gi|344211555|ref|YP_004795875.1| - 1.3e-29 102.9 28.0 1.9e-29 102.4 19.4 1.3 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Abhydrolase_6 PF12697.2 gi|344211556|ref|YP_004795876.1| - 1.1e-40 139.9 0.3 1.2e-40 139.7 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344211556|ref|YP_004795876.1| - 2.9e-26 92.4 0.0 2.9e-24 85.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|344211556|ref|YP_004795876.1| - 1.7e-21 76.4 0.0 8e-21 74.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|344211556|ref|YP_004795876.1| - 1.9e-07 30.8 0.0 3.5e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein UPF0227 PF05728.7 gi|344211556|ref|YP_004795876.1| - 0.00013 21.7 0.0 0.23 11.1 0.0 2.3 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.16 gi|344211556|ref|YP_004795876.1| - 0.00028 20.1 0.0 0.002 17.3 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family Ndr PF03096.9 gi|344211556|ref|YP_004795876.1| - 0.0022 16.5 0.0 0.0028 16.1 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_2 PF02230.11 gi|344211556|ref|YP_004795876.1| - 0.0048 16.3 0.1 0.041 13.3 0.0 2.3 2 1 0 2 2 2 1 Phospholipase/Carboxylesterase DLH PF01738.13 gi|344211556|ref|YP_004795876.1| - 0.009 15.3 0.0 0.73 9.0 0.0 2.2 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF915 PF06028.6 gi|344211556|ref|YP_004795876.1| - 0.015 14.4 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) FIST PF08495.5 gi|344211556|ref|YP_004795876.1| - 0.052 12.6 0.0 0.18 10.9 0.0 1.8 2 0 0 2 2 2 0 FIST N domain FSH1 PF03959.8 gi|344211556|ref|YP_004795876.1| - 0.055 12.9 0.0 0.12 11.7 0.0 1.5 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Phage_term_smal PF05944.7 gi|344211556|ref|YP_004795876.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Phage small terminase subunit Abhydrolase_3 PF07859.8 gi|344211556|ref|YP_004795876.1| - 0.086 12.3 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|344211556|ref|YP_004795876.1| - 0.1 12.7 0.3 0.29 11.3 0.2 1.6 1 1 0 1 1 1 0 Thioesterase domain Hydrolase_4 PF12146.3 gi|344211556|ref|YP_004795876.1| - 0.11 12.3 0.1 0.45 10.3 0.0 2.2 3 0 0 3 3 2 0 Putative lysophospholipase AMP-binding PF00501.23 gi|344211557|ref|YP_004795877.1| - 1.7e-78 263.9 2.8 2.9e-78 263.1 1.9 1.4 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344211557|ref|YP_004795877.1| - 2.9e-13 50.5 0.0 6.8e-13 49.3 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.1 gi|344211558|ref|YP_004795878.1| - 4e-25 88.1 0.1 1.3e-13 51.2 0.0 3.2 2 1 1 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|344211558|ref|YP_004795878.1| - 5.8e-25 87.4 2.4 1.7e-11 44.1 0.2 2.8 2 0 0 2 2 2 2 PAS fold PAS_3 PF08447.6 gi|344211558|ref|YP_004795878.1| - 2e-22 79.0 0.0 1.3e-17 63.6 0.0 2.5 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|344211558|ref|YP_004795878.1| - 1.4e-14 53.7 0.1 4e-14 52.2 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|344211558|ref|YP_004795878.1| - 9.2e-14 51.1 0.2 6.5e-06 25.9 0.1 3.0 3 1 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|344211558|ref|YP_004795878.1| - 2.9e-12 46.3 1.5 2.9e-12 46.3 1.0 3.4 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|344211558|ref|YP_004795878.1| - 4.9e-06 26.5 0.0 1.8e-05 24.7 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|344211558|ref|YP_004795878.1| - 9.1e-05 22.1 0.7 0.072 12.9 0.0 3.4 3 0 0 3 3 3 1 PAS domain HATPase_c_2 PF13581.1 gi|344211558|ref|YP_004795878.1| - 0.011 15.5 0.0 0.028 14.1 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|344211558|ref|YP_004795878.1| - 0.046 13.3 0.2 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IncA PF04156.9 gi|344211558|ref|YP_004795878.1| - 0.057 13.0 1.0 0.17 11.4 0.1 2.1 2 0 0 2 2 2 0 IncA protein Nup54 PF13874.1 gi|344211558|ref|YP_004795878.1| - 0.072 12.7 3.7 0.36 10.4 0.1 2.9 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 OKR_DC_1_N PF03709.10 gi|344211558|ref|YP_004795878.1| - 0.096 12.7 0.0 0.3 11.1 0.0 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain MR_MLE_C PF13378.1 gi|344211559|ref|YP_004795879.1| - 9.8e-28 96.3 0.0 3.3e-27 94.6 0.0 1.9 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|344211559|ref|YP_004795879.1| - 2.7e-14 53.1 0.0 6.2e-14 51.9 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|344211559|ref|YP_004795879.1| - 6e-12 45.9 0.4 8.9e-10 38.9 0.0 3.7 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|344211559|ref|YP_004795879.1| - 0.056 13.0 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein NosD PF05048.8 gi|344211560|ref|YP_004795880.1| - 3.5e-14 52.5 0.2 4.8e-06 25.9 0.0 2.1 1 1 0 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|344211560|ref|YP_004795880.1| - 3.6e-10 39.7 8.8 1.4e-05 24.9 1.6 2.6 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|344211560|ref|YP_004795880.1| - 8.4e-06 25.0 5.4 0.00013 21.2 0.2 2.3 1 1 0 2 2 2 2 Protein of unknown function (DUF1565) Bac_rhamnosid_N PF08531.5 gi|344211560|ref|YP_004795880.1| - 0.0044 16.5 6.3 0.022 14.2 0.2 2.9 1 1 1 3 3 3 2 Alpha-L-rhamnosidase N-terminal domain Lipocalin_4 PF13648.1 gi|344211560|ref|YP_004795880.1| - 0.065 13.8 12.4 4.7 7.8 3.6 3.9 1 1 1 2 2 2 0 Lipocalin-like domain ResIII PF04851.10 gi|344211561|ref|YP_004795881.1| - 1.8e-25 89.8 0.0 9.3e-24 84.2 0.0 2.9 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|344211561|ref|YP_004795881.1| - 5.3e-15 55.0 0.2 1.1e-14 53.9 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|344211561|ref|YP_004795881.1| - 2.1e-11 43.5 0.0 8.1e-11 41.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|344211561|ref|YP_004795881.1| - 0.016 15.2 0.0 3.9 7.4 0.0 3.5 4 1 1 5 5 5 0 Helicase C-terminal domain AAA_22 PF13401.1 gi|344211561|ref|YP_004795881.1| - 0.079 13.0 0.0 1.8 8.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF790 PF05626.6 gi|344211562|ref|YP_004795882.1| - 6.2e-88 294.8 0.0 9.1e-79 264.6 0.0 2.3 3 0 0 3 3 3 2 Protein of unknown function (DUF790) Levi_coat PF01819.12 gi|344211562|ref|YP_004795882.1| - 0.065 12.8 0.3 13 5.4 0.0 2.6 3 0 0 3 3 3 0 Levivirus coat protein NTP_transf_5 PF14907.1 gi|344211563|ref|YP_004795883.1| - 9.1e-58 195.5 0.0 1.1e-57 195.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Hpr_kinase_C PF07475.7 gi|344211564|ref|YP_004795884.1| - 2.2e-07 30.3 0.1 3.5e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.1 gi|344211564|ref|YP_004795884.1| - 0.0021 17.5 0.0 0.0042 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PEPCK_ATP PF01293.15 gi|344211564|ref|YP_004795884.1| - 0.0056 15.2 0.0 0.0076 14.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_22 PF13401.1 gi|344211564|ref|YP_004795884.1| - 0.032 14.3 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|344211564|ref|YP_004795884.1| - 0.033 14.1 0.2 0.065 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain KaiC PF06745.8 gi|344211564|ref|YP_004795884.1| - 0.041 12.9 0.0 0.07 12.2 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_33 PF13671.1 gi|344211564|ref|YP_004795884.1| - 0.053 13.3 0.0 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|344211564|ref|YP_004795884.1| - 0.07 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|344211564|ref|YP_004795884.1| - 0.073 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|344211564|ref|YP_004795884.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PqqD PF05402.7 gi|344211565|ref|YP_004795885.1| - 1.4e-16 60.2 0.1 1.6e-16 60.0 0.1 1.0 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) ABC_tran PF00005.22 gi|344211566|ref|YP_004795886.1| - 1.6e-31 109.4 0.0 2.9e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|344211566|ref|YP_004795886.1| - 1.1e-08 34.8 3.3 1.9e-08 34.1 2.3 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|344211566|ref|YP_004795886.1| - 2.4e-05 23.6 3.0 0.0002 20.6 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|344211566|ref|YP_004795886.1| - 0.0028 17.6 0.2 0.0052 16.7 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|344211566|ref|YP_004795886.1| - 0.01 15.8 0.0 0.54 10.1 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|344211566|ref|YP_004795886.1| - 0.02 15.7 0.2 0.051 14.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|344211566|ref|YP_004795886.1| - 0.031 13.8 0.1 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|344211566|ref|YP_004795886.1| - 0.044 13.9 1.2 0.3 11.2 0.9 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|344211566|ref|YP_004795886.1| - 0.1 11.8 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF87 PF01935.12 gi|344211566|ref|YP_004795886.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 Nol1_Nop2_Fmu_2 PF13636.1 gi|344211567|ref|YP_004795887.1| - 1.2e-19 70.2 0.0 1.5e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis DUF3217 PF11506.3 gi|344211567|ref|YP_004795887.1| - 0.085 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3217) Nol1_Nop2_Fmu PF01189.12 gi|344211568|ref|YP_004795888.1| - 1.3e-49 169.1 0.0 1.4e-49 168.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|344211568|ref|YP_004795888.1| - 1.8e-05 24.3 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211568|ref|YP_004795888.1| - 8.7e-05 23.0 0.0 0.00017 22.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344211568|ref|YP_004795888.1| - 0.00014 21.8 0.0 0.00027 20.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|344211568|ref|YP_004795888.1| - 0.0086 16.0 0.0 0.015 15.2 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.14 gi|344211568|ref|YP_004795888.1| - 0.043 13.3 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PAC2 PF09754.4 gi|344211569|ref|YP_004795889.1| - 2.5e-44 151.7 0.0 3.1e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Peptidase_S49 PF01343.13 gi|344211570|ref|YP_004795890.1| - 1.3e-40 138.6 0.0 2e-40 138.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|344211570|ref|YP_004795890.1| - 0.033 13.8 0.1 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 Clp protease DUF3500 PF12006.3 gi|344211570|ref|YP_004795890.1| - 0.051 12.5 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3500) Cytidylate_kin PF02224.13 gi|344211570|ref|YP_004795890.1| - 0.11 11.9 0.1 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase DUF373 PF04123.8 gi|344211571|ref|YP_004795891.1| - 1.3e-99 333.4 7.1 1.6e-99 333.2 4.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Keratin PF02422.11 gi|344211571|ref|YP_004795891.1| - 0.11 12.5 0.3 0.7 9.8 0.0 2.4 2 0 0 2 2 2 0 Keratin DUF1269 PF06897.7 gi|344211571|ref|YP_004795891.1| - 1.3 9.1 4.8 4.7 7.3 0.3 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) ATP_bind_4 PF01902.12 gi|344211572|ref|YP_004795892.1| - 1.7e-60 204.1 0.0 4e-60 202.8 0.0 1.5 1 1 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|344211572|ref|YP_004795892.1| - 0.00086 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|344211572|ref|YP_004795892.1| - 0.015 14.7 0.0 0.021 14.2 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|344211572|ref|YP_004795892.1| - 0.06 12.6 0.0 0.088 12.0 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NTP_transferase PF00483.18 gi|344211573|ref|YP_004795893.1| - 5.1e-27 94.7 0.0 6.4e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|344211573|ref|YP_004795893.1| - 0.00012 22.2 0.0 0.00013 22.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|344211573|ref|YP_004795893.1| - 0.16 11.5 0.2 1.4 8.5 0.1 2.6 2 1 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) NUDIX PF00293.23 gi|344211574|ref|YP_004795894.1| - 4.2e-10 39.3 0.0 5.8e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Glyoxalase_4 PF13669.1 gi|344211575|ref|YP_004795895.1| - 1.2e-15 57.4 0.0 1.5e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|344211575|ref|YP_004795895.1| - 2e-08 34.3 0.1 2.2e-08 34.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|344211575|ref|YP_004795895.1| - 4.9e-06 27.1 0.0 5.4e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344211575|ref|YP_004795895.1| - 1.2e-05 25.3 0.0 1.4e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MM_CoA_mutase PF01642.17 gi|344211576|ref|YP_004795896.1| - 7.1e-206 684.3 3.8 9e-206 683.9 2.6 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase FKBP_C PF00254.23 gi|344211577|ref|YP_004795897.1| - 5.2e-25 87.2 0.1 7.6e-25 86.7 0.1 1.2 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase YajC PF02699.10 gi|344211577|ref|YP_004795897.1| - 0.031 13.9 0.1 0.064 12.9 0.0 1.5 1 0 0 1 1 1 0 Preprotein translocase subunit DUF2187 PF09953.4 gi|344211577|ref|YP_004795897.1| - 0.12 12.0 0.6 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) TOBE PF03459.12 gi|344211577|ref|YP_004795897.1| - 0.16 12.1 1.1 0.55 10.3 0.1 2.2 2 0 0 2 2 2 0 TOBE domain Acetyltransf_1 PF00583.19 gi|344211578|ref|YP_004795898.1| - 7.4e-09 35.5 0.0 1.2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344211578|ref|YP_004795898.1| - 0.00013 22.0 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344211578|ref|YP_004795898.1| - 0.00014 21.9 0.0 0.00022 21.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344211578|ref|YP_004795898.1| - 0.0017 18.1 0.0 0.0035 17.2 0.0 1.5 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|344211578|ref|YP_004795898.1| - 0.0047 17.0 0.0 0.0063 16.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344211578|ref|YP_004795898.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_10 PF04967.7 gi|344211579|ref|YP_004795899.1| - 1.1e-17 63.2 0.0 4.5e-17 61.3 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain UPF0122 PF04297.9 gi|344211579|ref|YP_004795899.1| - 0.0066 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|344211579|ref|YP_004795899.1| - 0.038 13.2 0.0 0.097 11.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.2 gi|344211579|ref|YP_004795899.1| - 0.063 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|344211579|ref|YP_004795899.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.22 gi|344211580|ref|YP_004795900.1| - 1.1e-28 100.1 0.0 1.6e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211580|ref|YP_004795900.1| - 1.9e-08 34.5 0.1 0.0038 17.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344211580|ref|YP_004795900.1| - 0.0012 18.1 0.3 0.077 12.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|344211580|ref|YP_004795900.1| - 0.015 15.6 0.0 0.018 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arylesterase PF01731.15 gi|344211580|ref|YP_004795900.1| - 0.02 14.8 0.0 0.04 13.9 0.0 1.4 1 0 0 1 1 1 0 Arylesterase AAA_29 PF13555.1 gi|344211580|ref|YP_004795900.1| - 0.11 12.0 0.1 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|344211580|ref|YP_004795900.1| - 0.11 12.1 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|344211581|ref|YP_004795901.1| - 1.5e-26 93.3 0.0 2e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211581|ref|YP_004795901.1| - 7e-07 29.5 1.2 0.0004 20.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|344211581|ref|YP_004795901.1| - 1.4e-06 28.7 0.3 2.1e-06 28.1 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|344211581|ref|YP_004795901.1| - 9.7e-06 24.3 0.0 1.3e-05 23.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|344211581|ref|YP_004795901.1| - 0.00014 20.9 0.0 0.00025 20.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|344211581|ref|YP_004795901.1| - 0.0011 18.9 0.0 0.18 11.7 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|344211581|ref|YP_004795901.1| - 0.0014 19.3 0.1 0.0027 18.5 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344211581|ref|YP_004795901.1| - 0.0019 17.6 0.1 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|344211581|ref|YP_004795901.1| - 0.0023 17.2 0.0 0.0044 16.2 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|344211581|ref|YP_004795901.1| - 0.0026 17.6 0.0 0.0037 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344211581|ref|YP_004795901.1| - 0.0052 16.9 0.0 0.27 11.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|344211581|ref|YP_004795901.1| - 0.0056 16.1 0.4 0.056 12.8 0.1 2.2 1 1 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|344211581|ref|YP_004795901.1| - 0.0082 16.1 0.0 0.013 15.5 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|344211581|ref|YP_004795901.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|344211581|ref|YP_004795901.1| - 0.02 14.3 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|344211581|ref|YP_004795901.1| - 0.022 14.3 0.0 0.047 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344211581|ref|YP_004795901.1| - 0.023 14.3 0.6 0.061 13.0 0.1 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|344211581|ref|YP_004795901.1| - 0.028 13.8 0.1 0.1 11.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|344211581|ref|YP_004795901.1| - 0.038 13.9 1.1 1.1 9.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain BetR PF08667.5 gi|344211581|ref|YP_004795901.1| - 0.049 13.5 0.0 0.084 12.8 0.0 1.3 1 0 0 1 1 1 0 BetR domain Miro PF08477.8 gi|344211581|ref|YP_004795901.1| - 0.064 13.7 0.0 0.11 12.9 0.0 1.5 1 1 0 1 1 1 0 Miro-like protein MMR_HSR1 PF01926.18 gi|344211581|ref|YP_004795901.1| - 0.077 12.9 0.7 0.19 11.6 0.1 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase UPF0079 PF02367.12 gi|344211581|ref|YP_004795901.1| - 0.081 12.5 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|344211581|ref|YP_004795901.1| - 0.091 11.6 0.0 0.16 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.1 gi|344211581|ref|YP_004795901.1| - 0.092 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|344211581|ref|YP_004795901.1| - 0.16 10.7 0.5 1.4 7.7 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain BPD_transp_2 PF02653.11 gi|344211582|ref|YP_004795902.1| - 8.8e-31 106.8 31.2 1.6e-30 105.9 21.6 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|344211583|ref|YP_004795903.1| - 1.8e-29 102.5 39.8 2.2e-29 102.2 27.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.1 gi|344211584|ref|YP_004795904.1| - 9.6e-41 140.2 7.0 1.2e-40 139.9 4.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344211584|ref|YP_004795904.1| - 1.7e-17 63.2 0.5 5.6e-17 61.5 0.4 1.8 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|344211584|ref|YP_004795904.1| - 0.00013 20.8 0.0 0.0002 20.2 0.0 1.4 1 1 0 1 1 1 1 Receptor family ligand binding region adh_short PF00106.20 gi|344211585|ref|YP_004795905.1| - 1.6e-21 76.9 5.3 2.1e-21 76.5 3.7 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344211585|ref|YP_004795905.1| - 6.7e-09 35.8 0.1 8.3e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344211585|ref|YP_004795905.1| - 1.8e-06 27.7 1.5 2.3e-06 27.4 1.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344211585|ref|YP_004795905.1| - 0.0015 18.0 0.2 0.002 17.6 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|344211585|ref|YP_004795905.1| - 0.007 15.3 0.0 0.01 14.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Methyltransf_18 PF12847.2 gi|344211585|ref|YP_004795905.1| - 0.016 15.7 0.2 0.035 14.6 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Eno-Rase_NADH_b PF12242.3 gi|344211585|ref|YP_004795905.1| - 0.031 14.0 0.1 0.072 12.8 0.1 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FG-GAP PF01839.18 gi|344211585|ref|YP_004795905.1| - 6.7 6.5 7.9 2.3 8.0 0.1 3.1 3 0 0 3 3 3 0 FG-GAP repeat AMP-binding PF00501.23 gi|344211586|ref|YP_004795906.1| - 3.2e-79 266.2 0.0 3.9e-79 265.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344211586|ref|YP_004795906.1| - 8.9e-16 58.6 0.1 2e-15 57.4 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.11 gi|344211587|ref|YP_004795907.1| - 1.4e-35 122.6 61.2 6.2e-23 81.0 18.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|344211587|ref|YP_004795907.1| - 0.0042 16.8 0.6 4.5 7.1 0.0 3.2 2 1 1 3 3 3 2 MFS_1 like family zf-ribbon_3 PF13248.1 gi|344211588|ref|YP_004795908.1| - 5.1e-05 22.3 4.4 0.008 15.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|344211588|ref|YP_004795908.1| - 7.1e-05 22.5 1.8 7.1e-05 22.5 1.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344211588|ref|YP_004795908.1| - 9.2e-05 21.8 5.1 0.00015 21.0 3.5 1.4 1 1 0 1 1 1 1 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|344211588|ref|YP_004795908.1| - 0.00015 21.2 1.8 0.00017 21.0 1.3 1.2 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|344211588|ref|YP_004795908.1| - 0.0002 21.0 1.6 0.0005 19.7 1.1 1.6 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|344211588|ref|YP_004795908.1| - 0.00023 20.8 2.3 0.00025 20.7 1.6 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|344211588|ref|YP_004795908.1| - 0.0022 17.6 1.6 0.0023 17.5 1.1 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|344211588|ref|YP_004795908.1| - 0.0032 17.1 2.2 0.0038 16.8 1.6 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.5 gi|344211588|ref|YP_004795908.1| - 0.0032 16.8 4.3 0.01 15.2 3.0 1.8 1 1 0 1 1 1 1 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|344211588|ref|YP_004795908.1| - 0.0033 16.8 2.0 0.0041 16.5 1.4 1.2 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.1 gi|344211588|ref|YP_004795908.1| - 0.0047 16.5 1.1 0.15 11.7 0.8 2.1 1 1 0 1 1 1 1 Nudix N-terminal Ribosomal_L37e PF01907.14 gi|344211588|ref|YP_004795908.1| - 0.0057 16.4 1.7 0.0063 16.2 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L37e Rubredoxin PF00301.15 gi|344211588|ref|YP_004795908.1| - 0.012 15.4 0.4 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 Rubredoxin zf-HIT PF04438.11 gi|344211588|ref|YP_004795908.1| - 0.012 15.1 3.4 0.085 12.5 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger FYVE PF01363.16 gi|344211588|ref|YP_004795908.1| - 0.013 15.3 0.4 0.013 15.3 0.3 1.0 1 0 0 1 1 1 0 FYVE zinc finger zf-HYPF PF07503.7 gi|344211588|ref|YP_004795908.1| - 0.015 14.6 3.6 0.13 11.7 0.1 2.1 2 0 0 2 2 2 0 HypF finger zinc-ribbons_6 PF07191.7 gi|344211588|ref|YP_004795908.1| - 0.018 14.8 1.5 0.02 14.6 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|344211588|ref|YP_004795908.1| - 0.023 13.9 4.8 0.047 13.0 3.3 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|344211588|ref|YP_004795908.1| - 0.047 13.8 0.6 0.047 13.8 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS91 PF14319.1 gi|344211588|ref|YP_004795908.1| - 0.053 13.0 2.0 0.055 12.9 1.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|344211588|ref|YP_004795908.1| - 0.054 13.3 3.2 0.089 12.6 2.1 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|344211588|ref|YP_004795908.1| - 0.058 13.0 0.8 0.055 13.1 0.6 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Sgf11 PF08209.6 gi|344211588|ref|YP_004795908.1| - 0.085 12.1 3.9 0.51 9.6 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-IS66 PF13005.2 gi|344211588|ref|YP_004795908.1| - 0.091 12.7 2.2 0.24 11.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF35_N PF12172.3 gi|344211588|ref|YP_004795908.1| - 0.12 12.2 1.7 2.6 8.0 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Spt4 PF06093.8 gi|344211588|ref|YP_004795908.1| - 0.16 11.8 2.2 0.37 10.7 1.6 1.6 1 1 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-Mss51 PF13824.1 gi|344211588|ref|YP_004795908.1| - 0.18 11.6 4.7 0.58 10.0 0.3 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNHCP PF12647.2 gi|344211588|ref|YP_004795908.1| - 0.2 11.4 1.6 0.21 11.4 1.1 1.2 1 0 0 1 1 1 0 RNHCP domain GFA PF04828.9 gi|344211588|ref|YP_004795908.1| - 0.28 11.1 2.9 0.48 10.4 0.5 1.8 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zinc_ribbon_5 PF13719.1 gi|344211588|ref|YP_004795908.1| - 0.34 10.5 2.7 3.8 7.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344211588|ref|YP_004795908.1| - 0.34 10.6 2.7 4 7.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.7 gi|344211588|ref|YP_004795908.1| - 0.37 10.4 0.3 0.37 10.4 0.2 2.0 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Auto_anti-p27 PF06677.7 gi|344211588|ref|YP_004795908.1| - 0.4 10.4 2.3 1 9.1 1.8 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-LSD1 PF06943.7 gi|344211588|ref|YP_004795908.1| - 0.46 10.1 2.4 12 5.6 0.1 2.1 2 0 0 2 2 2 0 LSD1 zinc finger DUF329 PF03884.9 gi|344211588|ref|YP_004795908.1| - 0.46 10.0 2.1 1.1 8.8 1.6 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Zn-ribbon_8 PF09723.5 gi|344211588|ref|YP_004795908.1| - 0.47 10.4 3.5 0.54 10.2 0.2 2.0 1 1 1 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.9 gi|344211588|ref|YP_004795908.1| - 0.54 9.9 3.2 21 4.9 0.1 2.2 1 1 1 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|344211588|ref|YP_004795908.1| - 0.55 10.5 2.6 3.3 8.0 1.9 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF2296 PF10058.4 gi|344211588|ref|YP_004795908.1| - 0.56 9.9 3.1 1.5 8.5 0.0 2.2 2 1 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L32p PF01783.18 gi|344211588|ref|YP_004795908.1| - 0.61 10.2 3.1 1.4 9.1 2.1 1.6 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-ISL3 PF14690.1 gi|344211588|ref|YP_004795908.1| - 0.69 10.0 3.5 0.84 9.7 0.2 2.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1272 PF06906.6 gi|344211588|ref|YP_004795908.1| - 0.74 9.7 4.6 0.54 10.1 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-C2H2_3 PF13878.1 gi|344211588|ref|YP_004795908.1| - 0.88 9.1 3.9 2.3 7.8 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Prim_Zn_Ribbon PF08273.7 gi|344211588|ref|YP_004795908.1| - 0.9 9.6 7.5 13 5.9 5.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-C2H2_4 PF13894.1 gi|344211588|ref|YP_004795908.1| - 1.1 9.7 3.3 7.8 7.0 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-LITAF-like PF10601.4 gi|344211588|ref|YP_004795908.1| - 1.2 8.9 4.0 1.3 8.9 0.1 1.7 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-TFIIB PF13453.1 gi|344211588|ref|YP_004795908.1| - 1.4 8.1 5.0 5.1 6.3 3.5 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-piccolo PF05715.8 gi|344211588|ref|YP_004795908.1| - 1.9 8.5 5.4 15 5.6 3.7 1.9 1 1 0 1 1 1 0 Piccolo Zn-finger TFIIS_C PF01096.13 gi|344211588|ref|YP_004795908.1| - 2.5 7.8 4.4 4.7 6.9 0.3 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|344211588|ref|YP_004795908.1| - 3.8 7.1 6.5 2.4 7.7 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PAPS_reduct PF01507.14 gi|344211589|ref|YP_004795909.1| - 4.8e-17 62.3 0.0 5.9e-13 49.0 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|344211589|ref|YP_004795909.1| - 0.00087 18.7 0.0 0.0058 16.0 0.0 2.0 2 0 0 2 2 2 1 ATP-binding region PP-binding_2 PF14573.1 gi|344211589|ref|YP_004795909.1| - 0.11 12.5 0.2 0.26 11.3 0.1 1.6 1 0 0 1 1 1 0 Acyl-carrier DUF95 PF01944.12 gi|344211590|ref|YP_004795910.1| - 3.7e-28 98.3 10.5 4.9e-28 97.9 7.3 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF95 Fer2 PF00111.22 gi|344211592|ref|YP_004795912.1| - 2.4e-10 40.0 2.2 3.3e-10 39.5 1.5 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|344211592|ref|YP_004795912.1| - 0.011 15.5 0.1 0.012 15.4 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.4 gi|344211592|ref|YP_004795912.1| - 0.14 11.6 0.9 0.2 11.1 0.2 1.6 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Trp_halogenase PF04820.9 gi|344211593|ref|YP_004795913.1| - 3.7e-15 55.4 1.3 1.1e-10 40.8 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|344211593|ref|YP_004795913.1| - 1.7e-10 40.3 7.8 1.4e-07 30.7 0.2 2.6 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|344211593|ref|YP_004795913.1| - 2.2e-10 40.0 8.2 2.5e-05 23.3 1.4 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344211593|ref|YP_004795913.1| - 7.8e-09 35.0 4.0 0.00016 20.8 0.3 2.5 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|344211593|ref|YP_004795913.1| - 1.2e-07 31.1 11.0 0.00027 20.1 2.7 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|344211593|ref|YP_004795913.1| - 5.4e-07 29.9 6.0 8.4e-05 22.9 0.5 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|344211593|ref|YP_004795913.1| - 1.8e-06 27.0 0.4 3.2e-06 26.2 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|344211593|ref|YP_004795913.1| - 5.3e-06 25.1 0.5 0.00012 20.7 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|344211593|ref|YP_004795913.1| - 8.7e-06 25.6 7.5 8.9e-06 25.6 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|344211593|ref|YP_004795913.1| - 1.2e-05 24.5 2.2 7.9e-05 21.8 0.7 2.3 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|344211593|ref|YP_004795913.1| - 1.7e-05 24.7 0.0 1.7e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344211593|ref|YP_004795913.1| - 3.4e-05 23.9 0.0 6.7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|344211593|ref|YP_004795913.1| - 0.00018 21.2 0.0 0.00032 20.3 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|344211593|ref|YP_004795913.1| - 0.00061 18.8 1.7 0.052 12.4 0.3 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein ApbA PF02558.11 gi|344211593|ref|YP_004795913.1| - 0.0021 17.5 0.0 0.0048 16.3 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|344211593|ref|YP_004795913.1| - 0.031 13.8 1.4 0.072 12.6 1.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|344211593|ref|YP_004795913.1| - 0.037 14.1 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain ThiF PF00899.16 gi|344211593|ref|YP_004795913.1| - 0.077 12.8 0.4 0.16 11.8 0.3 1.5 1 0 0 1 1 1 0 ThiF family RPAP2_Rtr1 PF04181.8 gi|344211593|ref|YP_004795913.1| - 0.11 12.6 0.0 0.77 9.8 0.0 2.0 2 0 0 2 2 2 0 Rtr1/RPAP2 family DUF1628 PF07790.6 gi|344211594|ref|YP_004795914.1| - 7e-13 49.1 0.1 1.3e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Nup_retrotrp_bd PF10599.4 gi|344211594|ref|YP_004795914.1| - 0.037 14.6 0.6 0.053 14.1 0.4 1.2 1 0 0 1 1 1 0 Retro-transposon transporting motif Peptidase_M20 PF01546.23 gi|344211595|ref|YP_004795915.1| - 6.2e-23 81.2 16.4 2.3e-22 79.4 11.4 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|344211595|ref|YP_004795915.1| - 1.5e-12 47.2 0.4 3.7e-12 45.9 0.3 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribosomal_S10 PF00338.17 gi|344211596|ref|YP_004795916.1| - 1e-12 47.7 0.0 1.2e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e NUDIX PF00293.23 gi|344211597|ref|YP_004795917.1| - 1.7e-17 63.3 0.3 2.2e-17 62.9 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4013 PF13197.1 gi|344211598|ref|YP_004795918.1| - 3.2e-34 117.6 30.1 3.2e-34 117.6 20.8 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) 60KD_IMP PF02096.15 gi|344211598|ref|YP_004795918.1| - 0.69 9.5 5.9 1.4 8.5 4.1 1.6 1 1 0 1 1 1 0 60Kd inner membrane protein Man-6-P_recep PF02157.10 gi|344211598|ref|YP_004795918.1| - 0.77 8.7 4.7 0.089 11.7 0.5 1.5 2 0 0 2 2 2 0 Mannose-6-phosphate receptor TrmB PF01978.14 gi|344211600|ref|YP_004795920.1| - 0.02 14.5 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MacB_PCD PF12704.2 gi|344211601|ref|YP_004795921.1| - 6.7e-30 104.3 3.5 6.7e-30 104.3 2.4 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|344211601|ref|YP_004795921.1| - 4.1e-27 94.3 6.7 4.1e-27 94.3 4.6 2.0 2 0 0 2 2 2 1 FtsX-like permease family DUF456 PF04306.8 gi|344211601|ref|YP_004795921.1| - 3.2 7.7 21.3 2.6 8.0 11.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF456) ABC_tran PF00005.22 gi|344211602|ref|YP_004795922.1| - 1.6e-35 122.3 0.0 2.6e-35 121.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211602|ref|YP_004795922.1| - 4.2e-10 40.0 0.0 0.00028 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344211602|ref|YP_004795922.1| - 2.7e-05 23.5 0.0 0.0023 17.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344211602|ref|YP_004795922.1| - 6.7e-05 22.3 0.4 0.00013 21.4 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|344211602|ref|YP_004795922.1| - 0.00016 21.2 0.0 0.00026 20.5 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain DUF258 PF03193.11 gi|344211602|ref|YP_004795922.1| - 0.00026 20.2 0.1 0.00038 19.6 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344211602|ref|YP_004795922.1| - 0.0045 17.0 2.0 0.012 15.6 1.4 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|344211602|ref|YP_004795922.1| - 0.0056 16.5 0.5 0.038 13.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344211602|ref|YP_004795922.1| - 0.0067 16.7 0.0 0.0096 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344211602|ref|YP_004795922.1| - 0.009 15.9 0.3 0.087 12.7 0.2 2.5 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|344211602|ref|YP_004795922.1| - 0.012 14.9 0.2 0.067 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|344211602|ref|YP_004795922.1| - 0.013 16.3 0.2 0.028 15.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|344211602|ref|YP_004795922.1| - 0.016 14.9 0.6 0.42 10.3 0.1 2.5 2 1 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|344211602|ref|YP_004795922.1| - 0.027 14.7 0.0 0.098 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|344211602|ref|YP_004795922.1| - 0.034 14.2 0.2 0.14 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|344211602|ref|YP_004795922.1| - 0.055 12.9 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|344211602|ref|YP_004795922.1| - 0.069 12.0 0.4 1.3 7.8 0.2 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|344211602|ref|YP_004795922.1| - 0.09 12.7 0.5 0.15 11.9 0.3 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|344211602|ref|YP_004795922.1| - 0.096 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|344211602|ref|YP_004795922.1| - 0.097 12.2 0.3 0.26 10.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain LolA PF03548.10 gi|344211603|ref|YP_004795923.1| - 0.0069 16.0 0.1 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 Outer membrane lipoprotein carrier protein LolA DUF4367 PF14285.1 gi|344211603|ref|YP_004795923.1| - 4.7 6.4 9.8 0.048 12.9 0.3 2.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4367) Mut7-C PF01927.11 gi|344211604|ref|YP_004795924.1| - 8.7e-43 145.8 0.0 9.7e-43 145.6 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain BIR PF00653.16 gi|344211604|ref|YP_004795924.1| - 0.062 13.7 0.1 0.23 11.8 0.0 1.8 1 1 1 2 2 2 0 Inhibitor of Apoptosis domain DUF188 PF02639.9 gi|344211604|ref|YP_004795924.1| - 0.42 10.0 2.0 0.58 9.6 1.0 1.4 1 1 0 1 1 1 0 Uncharacterized BCR, YaiI/YqxD family COG1671 DUF35_N PF12172.3 gi|344211604|ref|YP_004795924.1| - 1.9 8.5 5.6 2.6 8.0 0.7 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_pol_B_thumb PF14791.1 gi|344211605|ref|YP_004795925.1| - 1.9e-24 85.1 0.0 5e-24 83.7 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|344211605|ref|YP_004795925.1| - 1.7e-15 56.9 1.8 2.2e-13 50.1 0.1 3.4 2 1 1 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|344211605|ref|YP_004795925.1| - 2.4e-13 50.2 0.1 1.6e-12 47.5 0.0 2.4 2 1 0 2 2 2 1 PHP domain HHH_5 PF14520.1 gi|344211605|ref|YP_004795925.1| - 3.6e-12 46.2 8.9 7.2e-10 38.8 0.1 3.8 4 0 0 4 4 4 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|344211605|ref|YP_004795925.1| - 0.0002 21.1 1.0 0.29 11.0 0.1 3.6 2 1 2 4 4 4 2 Helix-hairpin-helix motif DNA_pol_B_palm PF14792.1 gi|344211605|ref|YP_004795925.1| - 0.006 16.6 0.0 0.018 15.1 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|344211605|ref|YP_004795925.1| - 0.026 14.2 0.2 0.1 12.3 0.1 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix motif Aminotran_5 PF00266.14 gi|344211606|ref|YP_004795926.1| - 0.019 13.6 0.1 0.024 13.3 0.1 1.1 1 0 0 1 1 1 0 Aminotransferase class-V Acetyltransf_11 PF13720.1 gi|344211606|ref|YP_004795926.1| - 0.075 13.2 1.7 0.13 12.5 0.3 1.9 1 1 1 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CHAT PF12770.2 gi|344211607|ref|YP_004795927.1| - 0.031 13.4 0.0 0.086 11.9 0.0 1.6 1 1 0 1 1 1 0 CHAT domain YugN PF08868.5 gi|344211607|ref|YP_004795927.1| - 0.12 12.0 0.2 2.3 7.8 0.0 2.4 2 0 0 2 2 2 0 YugN-like family VirE1 PF12189.3 gi|344211607|ref|YP_004795927.1| - 0.19 11.8 0.2 0.67 10.1 0.1 1.9 1 0 0 1 1 1 0 Single-strand DNA-binding protein Response_reg PF00072.19 gi|344211609|ref|YP_004795929.1| - 2.2e-20 72.7 0.1 3.2e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|344211609|ref|YP_004795929.1| - 2.9e-11 43.6 0.0 8.9e-11 42.0 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|344211609|ref|YP_004795929.1| - 3e-11 43.0 0.0 7.5e-11 41.8 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|344211609|ref|YP_004795929.1| - 9.4e-07 28.8 0.0 3.4e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.10 gi|344211609|ref|YP_004795929.1| - 3e-06 27.2 0.0 5.9e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.6 gi|344211609|ref|YP_004795929.1| - 2.4e-05 24.3 0.0 5.9e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|344211609|ref|YP_004795929.1| - 0.00035 20.3 0.0 0.00089 19.0 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF769 PF05590.6 gi|344211609|ref|YP_004795929.1| - 0.029 13.5 0.1 0.056 12.6 0.0 1.5 1 1 1 2 2 2 0 Xylella fastidiosa protein of unknown function (DUF769) FleQ PF06490.6 gi|344211609|ref|YP_004795929.1| - 0.09 12.9 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ Rhomboid PF01694.17 gi|344211610|ref|YP_004795930.1| - 8.6e-23 80.9 16.0 8.6e-23 80.9 11.1 1.5 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|344211610|ref|YP_004795930.1| - 1.2e-13 50.6 4.9 1.7e-13 50.2 3.4 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|344211610|ref|YP_004795930.1| - 6.5e-05 23.1 2.4 7.2e-05 23.0 0.1 2.1 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Endonuclease_5 PF04493.9 gi|344211611|ref|YP_004795931.1| - 2e-47 161.1 0.0 2.6e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|344211611|ref|YP_004795931.1| - 0.022 13.8 0.2 0.11 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function DUF99 adh_short PF00106.20 gi|344211612|ref|YP_004795932.1| - 1.2e-32 113.0 0.0 1.7e-32 112.6 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344211612|ref|YP_004795932.1| - 2.8e-17 63.3 0.0 3.6e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344211612|ref|YP_004795932.1| - 1.9e-12 47.2 0.0 3.7e-12 46.2 0.0 1.5 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344211612|ref|YP_004795932.1| - 3.9e-06 26.4 0.0 1.2e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|344211612|ref|YP_004795932.1| - 8.3e-06 25.9 0.1 1.1e-05 25.4 0.1 1.4 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|344211612|ref|YP_004795932.1| - 0.00027 19.9 0.0 0.00063 18.7 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain DUF1776 PF08643.5 gi|344211612|ref|YP_004795932.1| - 0.00041 19.5 0.0 0.00049 19.3 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) Eno-Rase_NADH_b PF12242.3 gi|344211612|ref|YP_004795932.1| - 0.00059 19.5 0.2 0.0014 18.3 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|344211612|ref|YP_004795932.1| - 0.084 12.1 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family ArsA_ATPase PF02374.10 gi|344211613|ref|YP_004795933.1| - 1.3e-77 260.8 0.0 1.1e-50 172.4 0.0 2.1 2 0 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|344211613|ref|YP_004795933.1| - 2.1e-11 43.6 0.0 4.8e-10 39.1 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344211613|ref|YP_004795933.1| - 0.00013 21.9 0.3 0.003 17.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|344211613|ref|YP_004795933.1| - 0.027 13.8 1.7 0.037 13.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain Fer4_NifH PF00142.13 gi|344211613|ref|YP_004795933.1| - 0.033 13.3 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.12 gi|344211613|ref|YP_004795933.1| - 0.047 13.0 0.0 0.067 12.6 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|344211613|ref|YP_004795933.1| - 0.068 12.5 0.3 0.73 9.2 0.2 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|344211613|ref|YP_004795933.1| - 0.072 12.3 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein ParA PF10609.4 gi|344211613|ref|YP_004795933.1| - 0.16 11.8 0.2 0.77 9.6 0.0 2.1 2 0 0 2 2 2 0 ParA/MinD ATPase like zf-ribbon_3 PF13248.1 gi|344211614|ref|YP_004795934.1| - 0.0005 19.1 1.2 0.58 9.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain FYVE PF01363.16 gi|344211614|ref|YP_004795934.1| - 0.0053 16.6 0.2 0.007 16.2 0.1 1.2 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.2 gi|344211614|ref|YP_004795934.1| - 0.0081 15.9 1.1 0.017 14.9 0.8 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344211614|ref|YP_004795934.1| - 0.011 15.2 2.0 0.96 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|344211614|ref|YP_004795934.1| - 0.034 13.8 2.1 0.72 9.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|344211614|ref|YP_004795934.1| - 0.071 12.8 0.8 1.7 8.4 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|344211614|ref|YP_004795934.1| - 0.12 12.2 0.7 1.7 8.5 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-dskA_traR PF01258.12 gi|344211614|ref|YP_004795934.1| - 0.17 11.6 1.4 1.5 8.5 1.0 2.2 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger TF_Zn_Ribbon PF08271.7 gi|344211614|ref|YP_004795934.1| - 0.22 10.8 4.0 5.9 6.3 0.7 2.2 1 1 0 2 2 2 0 TFIIB zinc-binding zf-HYPF PF07503.7 gi|344211614|ref|YP_004795934.1| - 0.56 9.6 4.1 1.2 8.6 0.2 2.2 2 0 0 2 2 2 0 HypF finger zf-NADH-PPase PF09297.6 gi|344211614|ref|YP_004795934.1| - 0.64 9.5 3.1 3.6 7.1 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|344211614|ref|YP_004795934.1| - 1.2 9.2 5.1 34 4.5 3.5 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|344211614|ref|YP_004795934.1| - 2.4 8.2 5.0 1.7 8.6 0.1 2.4 2 1 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Helicase_C_2 PF13307.1 gi|344211615|ref|YP_004795935.1| - 1.9e-24 86.4 0.0 5.1e-24 85.1 0.0 1.7 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|344211615|ref|YP_004795935.1| - 4.1e-16 58.8 0.0 7.2e-15 54.8 0.0 2.1 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|344211615|ref|YP_004795935.1| - 1.5e-09 37.5 0.0 0.00099 18.6 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|344211615|ref|YP_004795935.1| - 5.3e-08 32.9 0.0 0.00011 22.0 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|344211615|ref|YP_004795935.1| - 7.7e-06 25.2 0.3 0.00051 19.3 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_19 PF13245.1 gi|344211615|ref|YP_004795935.1| - 6.6e-05 22.5 0.1 0.00027 20.6 0.0 2.1 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|344211615|ref|YP_004795935.1| - 0.0008 19.0 0.5 0.049 13.1 0.1 2.5 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|344211615|ref|YP_004795935.1| - 0.015 14.2 0.4 0.86 8.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|344211615|ref|YP_004795935.1| - 0.025 14.7 1.4 10 6.2 0.0 3.0 2 1 1 3 3 3 0 AAA domain DUF1253 PF06862.7 gi|344211615|ref|YP_004795935.1| - 0.064 11.6 0.0 0.12 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) TBP PF00352.16 gi|344211616|ref|YP_004795936.1| - 7.7e-65 214.2 0.0 1.7e-31 107.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|344211616|ref|YP_004795936.1| - 0.0081 16.1 0.0 2.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|344211616|ref|YP_004795936.1| - 0.037 13.3 0.6 8.8 5.7 0.0 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|344211616|ref|YP_004795936.1| - 0.087 12.8 0.0 0.28 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) DUF3904 PF13044.1 gi|344211616|ref|YP_004795936.1| - 0.18 10.2 0.1 0.24 9.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3904) TRAM PF01938.15 gi|344211617|ref|YP_004795937.1| - 9.6e-15 54.1 1.1 2e-14 53.0 0.8 1.6 1 0 0 1 1 1 1 TRAM domain UPF0150 PF03681.10 gi|344211617|ref|YP_004795937.1| - 0.032 13.8 0.1 0.97 9.1 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) CoA_transf_3 PF02515.12 gi|344211618|ref|YP_004795938.1| - 1e-62 210.7 0.0 1.4e-62 210.3 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.14 gi|344211619|ref|YP_004795939.1| - 1.9e-18 66.4 0.8 2.8e-18 65.9 0.5 1.3 1 1 0 1 1 1 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|344211619|ref|YP_004795939.1| - 0.004 16.9 0.8 0.0059 16.3 0.5 1.5 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Peripla_BP_6 PF13458.1 gi|344211619|ref|YP_004795939.1| - 0.0068 15.8 0.4 0.12 11.6 0.1 1.8 1 1 1 2 2 2 1 Periplasmic binding protein SNAPc_SNAP43 PF09808.4 gi|344211619|ref|YP_004795939.1| - 0.016 14.9 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 Flg_hook PF02120.11 gi|344211619|ref|YP_004795939.1| - 0.019 14.5 0.5 1.6 8.4 0.0 3.0 3 0 0 3 3 3 0 Flagellar hook-length control protein FliK Met_asp_mut_E PF06368.6 gi|344211620|ref|YP_004795940.1| - 1e-184 613.8 0.0 1.2e-184 613.6 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.6 gi|344211621|ref|YP_004795941.1| - 3.7e-116 386.3 0.0 5.3e-116 385.8 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.8 gi|344211621|ref|YP_004795941.1| - 6.1e-63 211.3 1.3 6.1e-63 211.3 0.9 2.0 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.1 gi|344211621|ref|YP_004795941.1| - 8e-09 35.4 0.7 1.7e-08 34.4 0.2 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MaoC_dehydrat_N PF13452.1 gi|344211622|ref|YP_004795942.1| - 7.1e-06 25.8 0.1 0.00054 19.7 0.0 2.3 2 0 0 2 2 2 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|344211622|ref|YP_004795942.1| - 7.4e-05 22.1 0.0 0.0023 17.3 0.0 2.2 2 0 0 2 2 2 1 MaoC like domain 4HBT_2 PF13279.1 gi|344211622|ref|YP_004795942.1| - 0.0018 18.7 0.0 0.061 13.7 0.0 2.2 2 0 0 2 2 2 1 Thioesterase-like superfamily Imm1 PF14430.1 gi|344211622|ref|YP_004795942.1| - 0.043 13.9 0.0 0.085 13.0 0.0 1.5 1 0 0 1 1 1 0 Immunity protein Imm1 HpcH_HpaI PF03328.9 gi|344211623|ref|YP_004795943.1| - 2.2e-16 59.3 0.2 1.1e-15 57.1 0.0 2.1 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.17 gi|344211623|ref|YP_004795943.1| - 2.5e-05 22.4 0.0 0.00034 18.7 0.0 2.1 2 0 0 2 2 2 1 Malate synthase C-C_Bond_Lyase PF15617.1 gi|344211623|ref|YP_004795943.1| - 0.00021 20.2 0.0 0.37 9.5 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Aminotran_1_2 PF00155.16 gi|344211624|ref|YP_004795944.1| - 2.6e-46 158.2 0.0 3.1e-46 157.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|344211624|ref|YP_004795944.1| - 2e-09 36.6 0.0 5.8e-09 35.1 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|344211624|ref|YP_004795944.1| - 3e-06 26.6 0.0 4.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|344211624|ref|YP_004795944.1| - 1e-05 24.7 0.1 1.8e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|344211624|ref|YP_004795944.1| - 3.1e-05 22.4 0.0 4.2e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|344211624|ref|YP_004795944.1| - 0.0017 17.0 0.0 0.0044 15.7 0.0 1.7 2 0 0 2 2 2 1 Allinase PGPGW PF09656.5 gi|344211625|ref|YP_004795945.1| - 2.6 7.3 9.5 65 2.9 6.4 2.1 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) CinA PF02464.12 gi|344211626|ref|YP_004795946.1| - 8.6e-59 197.4 1.4 9.9e-59 197.2 1.0 1.0 1 0 0 1 1 1 1 Competence-damaged protein UPF0254 PF06787.6 gi|344211626|ref|YP_004795946.1| - 0.11 11.9 0.2 11 5.5 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0254) DUF457 PF04307.9 gi|344211627|ref|YP_004795947.1| - 5.7e-18 64.7 6.0 8.6e-18 64.1 4.2 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|344211627|ref|YP_004795947.1| - 1.4e-06 28.0 0.2 1.9e-06 27.6 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C PHP_C PF13263.1 gi|344211628|ref|YP_004795948.1| - 1.3e-07 30.9 0.3 2.8e-07 29.9 0.2 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|344211628|ref|YP_004795948.1| - 0.061 13.1 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 PHP domain DUF2789 PF10982.3 gi|344211629|ref|YP_004795949.1| - 0.037 14.0 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) Spt5-NGN PF03439.8 gi|344211630|ref|YP_004795950.1| - 1.7e-24 85.3 0.1 2.8e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|344211630|ref|YP_004795950.1| - 3e-07 29.8 2.1 4.6e-07 29.3 0.1 2.3 3 0 0 3 3 3 1 KOW motif NusG PF02357.14 gi|344211630|ref|YP_004795950.1| - 0.0032 17.6 0.0 0.04 14.1 0.0 2.2 1 1 0 1 1 1 1 Transcription termination factor nusG Saccharop_dh_N PF04455.7 gi|344211630|ref|YP_004795950.1| - 0.068 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region MCPsignal PF00015.16 gi|344211632|ref|YP_004795952.1| - 6.4e-49 166.3 78.2 3.9e-47 160.5 25.7 5.4 4 1 1 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344211632|ref|YP_004795952.1| - 2.5e-09 37.1 0.5 2.5e-09 37.1 0.4 6.5 7 1 1 8 8 6 2 HAMP domain Laminin_II PF06009.7 gi|344211632|ref|YP_004795952.1| - 0.00038 20.2 40.7 0.054 13.2 0.2 5.2 2 2 3 5 5 5 3 Laminin Domain II EzrA PF06160.7 gi|344211632|ref|YP_004795952.1| - 0.00096 17.4 35.6 0.005 15.0 6.8 3.4 2 1 1 3 3 3 2 Septation ring formation regulator, EzrA Laminin_I PF06008.9 gi|344211632|ref|YP_004795952.1| - 0.005 16.1 17.9 0.005 16.1 12.4 4.1 1 1 2 4 4 4 2 Laminin Domain I TMP_2 PF06791.8 gi|344211632|ref|YP_004795952.1| - 0.0082 15.7 39.0 0.53 9.8 10.6 4.1 1 1 2 3 3 3 2 Prophage tail length tape measure protein DUF869 PF05911.6 gi|344211632|ref|YP_004795952.1| - 0.015 13.5 39.5 0.62 8.2 17.1 2.2 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) Spc7 PF08317.6 gi|344211632|ref|YP_004795952.1| - 0.019 13.6 32.9 0.064 11.9 5.8 3.5 1 1 1 3 3 3 0 Spc7 kinetochore protein NPV_P10 PF05531.7 gi|344211632|ref|YP_004795952.1| - 0.086 13.0 33.5 2 8.7 2.4 6.2 3 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.5 gi|344211632|ref|YP_004795952.1| - 0.17 11.9 27.9 0.7 10.0 4.2 4.6 1 1 3 5 5 5 0 Fibrinogen alpha/beta chain family DUF1319 PF07028.6 gi|344211632|ref|YP_004795952.1| - 0.17 12.0 10.1 1.9 8.6 0.2 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF1319) DUF948 PF06103.6 gi|344211632|ref|YP_004795952.1| - 0.21 11.4 41.6 0.054 13.3 1.4 7.9 4 1 5 9 9 9 0 Bacterial protein of unknown function (DUF948) RPW8 PF05659.6 gi|344211632|ref|YP_004795952.1| - 0.3 10.6 6.7 16 4.9 0.0 4.5 2 2 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Exonuc_VII_S PF02609.11 gi|344211632|ref|YP_004795952.1| - 0.55 10.0 7.7 8.2 6.2 0.0 3.9 4 0 0 4 4 4 0 Exonuclease VII small subunit COG2 PF06148.6 gi|344211632|ref|YP_004795952.1| - 1.1 9.1 30.7 0.43 10.4 0.2 6.1 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 LXG PF04740.7 gi|344211632|ref|YP_004795952.1| - 1.1 8.9 37.9 0.55 9.9 2.0 4.8 3 2 0 3 3 3 0 LXG domain of WXG superfamily AKNA PF12443.3 gi|344211632|ref|YP_004795952.1| - 2.1 8.4 8.0 0.39 10.7 0.4 3.0 2 2 1 3 3 3 0 AT-hook-containing transcription factor Mod_r PF07200.8 gi|344211632|ref|YP_004795952.1| - 3.6 7.4 26.5 1.2 9.0 2.2 5.0 2 2 4 6 6 6 0 Modifier of rudimentary (Mod(r)) protein BLOC1_2 PF10046.4 gi|344211632|ref|YP_004795952.1| - 4.2 7.5 36.6 4 7.6 1.7 5.9 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Muted PF14942.1 gi|344211632|ref|YP_004795952.1| - 4.6 7.1 27.2 0.9 9.4 3.8 3.7 3 0 0 3 3 3 0 Organelle biogenesis, Muted-like protein APG17 PF04108.7 gi|344211632|ref|YP_004795952.1| - 5.7 5.6 33.0 21 3.7 15.7 3.5 1 1 1 2 2 2 0 Autophagy protein Apg17 RmuC PF02646.11 gi|344211632|ref|YP_004795952.1| - 6.1 5.5 30.6 0.45 9.3 2.1 5.5 4 2 3 7 7 7 0 RmuC family Reo_sigmaC PF04582.7 gi|344211632|ref|YP_004795952.1| - 6.5 5.8 40.1 0.32 10.1 7.4 4.2 3 1 2 5 5 5 0 Reovirus sigma C capsid protein IFT57 PF10498.4 gi|344211632|ref|YP_004795952.1| - 6.7 5.3 33.5 0.068 11.8 3.0 4.3 2 2 3 5 5 5 0 Intra-flagellar transport protein 57 Transposase_22 PF02994.9 gi|344211632|ref|YP_004795952.1| - 8.2 4.7 27.8 0.075 11.5 8.7 2.6 1 1 1 2 2 2 0 L1 transposable element Peripla_BP_6 PF13458.1 gi|344211633|ref|YP_004795953.1| - 5.3e-27 95.0 10.8 6.4e-27 94.8 7.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|344211633|ref|YP_004795953.1| - 5.9e-24 84.4 0.1 8.2e-24 84.0 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|344211633|ref|YP_004795953.1| - 0.00021 20.1 0.1 0.016 14.0 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain Tubulin PF00091.20 gi|344211634|ref|YP_004795954.1| - 5.1e-35 121.2 0.5 1.5e-34 119.7 0.2 1.8 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|344211634|ref|YP_004795954.1| - 2.9e-34 116.9 1.8 1e-33 115.2 0.3 2.6 2 0 0 2 2 2 1 FtsZ family, C-terminal domain ThiF PF00899.16 gi|344211634|ref|YP_004795954.1| - 0.22 11.3 2.5 0.37 10.6 1.2 1.9 1 1 0 1 1 1 0 ThiF family tRNA_deacylase PF04414.7 gi|344211635|ref|YP_004795955.1| - 2.6e-65 219.5 0.0 4.1e-65 218.8 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Na_Ca_ex PF01699.19 gi|344211636|ref|YP_004795956.1| - 2.6e-15 56.2 15.2 8.5e-09 35.1 0.4 2.7 2 1 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.6 gi|344211637|ref|YP_004795957.1| - 5e-26 90.5 0.0 1.2e-25 89.3 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|344211637|ref|YP_004795957.1| - 1.9e-15 57.1 0.0 2.8e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|344211637|ref|YP_004795957.1| - 3.2e-05 23.8 0.0 0.00059 19.7 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|344211637|ref|YP_004795957.1| - 0.00015 21.1 0.1 0.00029 20.2 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|344211637|ref|YP_004795957.1| - 0.00019 21.4 1.4 0.00038 20.5 1.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|344211637|ref|YP_004795957.1| - 0.00031 19.8 0.5 0.00043 19.3 0.4 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|344211637|ref|YP_004795957.1| - 0.00072 18.7 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|344211637|ref|YP_004795957.1| - 0.00095 18.1 3.4 0.0016 17.3 2.3 1.3 1 0 0 1 1 1 1 FAD binding domain F420_oxidored PF03807.12 gi|344211637|ref|YP_004795957.1| - 0.0016 18.7 0.1 0.0037 17.6 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GIDA PF01134.17 gi|344211637|ref|YP_004795957.1| - 0.01 14.7 0.5 0.013 14.3 0.4 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|344211637|ref|YP_004795957.1| - 0.022 14.6 0.1 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|344211637|ref|YP_004795957.1| - 0.026 14.1 0.1 0.044 13.4 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|344211637|ref|YP_004795957.1| - 0.036 13.1 0.4 0.061 12.3 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|344211637|ref|YP_004795957.1| - 0.055 13.2 0.1 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thi4 PF01946.12 gi|344211637|ref|YP_004795957.1| - 0.09 11.8 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Thi4 family HHH_5 PF14520.1 gi|344211638|ref|YP_004795958.1| - 3.1e-07 30.4 1.2 4.6e-07 29.9 0.8 1.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|344211638|ref|YP_004795958.1| - 0.00013 21.8 0.0 0.0012 18.7 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|344211638|ref|YP_004795958.1| - 0.00017 21.4 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|344211638|ref|YP_004795958.1| - 0.004 17.1 0.0 0.0069 16.3 0.0 1.3 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|344211638|ref|YP_004795958.1| - 0.021 14.3 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda TfoX_C PF04994.8 gi|344211638|ref|YP_004795958.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 TfoX C-terminal domain Daxx PF03344.10 gi|344211638|ref|YP_004795958.1| - 6.1 5.1 16.3 6.6 5.0 11.3 1.0 1 0 0 1 1 1 0 Daxx Family Mitofilin PF09731.4 gi|344211638|ref|YP_004795958.1| - 7.6 5.0 10.8 7.7 5.0 7.5 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Macoilin PF09726.4 gi|344211638|ref|YP_004795958.1| - 8.7 4.4 6.7 8.9 4.4 4.6 1.0 1 0 0 1 1 1 0 Transmembrane protein Chorismate_bind PF00425.13 gi|344211639|ref|YP_004795959.1| - 1.9e-100 335.4 0.0 3e-100 334.7 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|344211639|ref|YP_004795959.1| - 2.5e-15 56.7 0.1 1.2e-14 54.5 0.0 2.1 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|344211640|ref|YP_004795960.1| - 8e-43 146.1 0.0 4e-41 140.5 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|344211640|ref|YP_004795960.1| - 0.00013 21.4 0.1 0.00047 19.6 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.14 gi|344211641|ref|YP_004795961.1| - 1.4e-43 149.0 0.0 1.8e-43 148.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Alpha-amylase PF00128.19 gi|344211642|ref|YP_004795962.1| - 9.7e-29 100.7 1.0 1.5e-28 100.1 0.7 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF1939 PF09154.5 gi|344211642|ref|YP_004795962.1| - 1.9e-22 78.9 4.1 1.9e-22 78.9 2.9 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1939) TAT_signal PF10518.4 gi|344211642|ref|YP_004795962.1| - 0.0047 16.8 3.0 0.01 15.8 2.0 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Aminotran_5 PF00266.14 gi|344211642|ref|YP_004795962.1| - 0.052 12.2 0.0 0.076 11.7 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Saccharop_dh PF03435.13 gi|344211643|ref|YP_004795963.1| - 2.6e-22 79.3 0.0 2.9e-22 79.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|344211643|ref|YP_004795963.1| - 5.6e-07 29.7 0.1 3.2e-06 27.2 0.0 2.0 1 1 1 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|344211643|ref|YP_004795963.1| - 0.00027 20.4 0.0 0.00035 20.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Bacteriocin_IId PF09221.5 gi|344211643|ref|YP_004795963.1| - 0.038 13.8 0.0 0.098 12.5 0.0 1.7 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like Rieske PF00355.21 gi|344211644|ref|YP_004795964.1| - 1.6e-08 33.9 0.0 2.2e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HTH_20 PF12840.2 gi|344211645|ref|YP_004795965.1| - 0.043 13.6 0.1 0.069 12.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Zn_Tnp_IS91 PF14319.1 gi|344211645|ref|YP_004795965.1| - 0.047 13.1 0.3 0.053 13.0 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.6 gi|344211645|ref|YP_004795965.1| - 0.41 10.3 2.3 0.79 9.4 1.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|344211645|ref|YP_004795965.1| - 1 9.3 8.2 0.85 9.6 4.5 1.8 2 0 0 2 2 2 0 Zinc ribbon domain FYDLN_acid PF09538.5 gi|344211645|ref|YP_004795965.1| - 1.6 9.3 6.1 0.49 11.0 1.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-trcl PF13451.1 gi|344211645|ref|YP_004795965.1| - 8.1 6.1 9.0 7.9 6.2 4.3 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain Usp PF00582.21 gi|344211646|ref|YP_004795966.1| - 1.3e-63 213.3 9.5 3.6e-34 117.9 0.6 2.0 2 0 0 2 2 2 2 Universal stress protein family Lactamase_B_4 PF13691.1 gi|344211646|ref|YP_004795966.1| - 0.042 13.3 0.0 8 6.0 0.0 2.4 2 0 0 2 2 2 0 tRNase Z endonuclease PTS_IIB PF02302.12 gi|344211646|ref|YP_004795966.1| - 0.05 14.0 0.2 1.4 9.4 0.0 2.4 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit FAD_binding_6 PF00970.19 gi|344211647|ref|YP_004795967.1| - 4.9e-13 49.0 0.0 6.6e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.14 gi|344211648|ref|YP_004795968.1| - 1.5e-62 211.0 0.6 2.3e-62 210.5 0.4 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|344211648|ref|YP_004795968.1| - 4e-40 137.5 0.1 7.9e-40 136.5 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|344211648|ref|YP_004795968.1| - 2.1e-06 27.3 0.3 3.7e-06 26.5 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Urotensin_II PF02083.10 gi|344211648|ref|YP_004795968.1| - 0.14 11.5 0.4 0.28 10.5 0.3 1.5 1 0 0 1 1 1 0 Urotensin II TPP_enzyme_C PF02775.16 gi|344211649|ref|YP_004795969.1| - 4e-32 110.8 0.4 5.9e-32 110.3 0.3 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|344211649|ref|YP_004795969.1| - 1.7e-17 63.0 0.0 3.8e-17 61.9 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Methyltransf_11 PF08241.7 gi|344211650|ref|YP_004795970.1| - 4.3e-19 68.7 0.0 7.1e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344211650|ref|YP_004795970.1| - 3.1e-14 52.8 0.0 4.1e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344211650|ref|YP_004795970.1| - 1.4e-11 44.3 0.0 4.6e-11 42.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344211650|ref|YP_004795970.1| - 3e-11 42.8 0.0 3.8e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|344211650|ref|YP_004795970.1| - 5.1e-11 42.8 0.0 1e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211650|ref|YP_004795970.1| - 2.1e-10 40.9 0.0 3.5e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211650|ref|YP_004795970.1| - 5.4e-10 39.8 0.0 9.9e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344211650|ref|YP_004795970.1| - 6.3e-07 29.4 0.6 1.3e-06 28.4 0.4 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|344211650|ref|YP_004795970.1| - 1.6e-05 24.5 0.0 2.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|344211650|ref|YP_004795970.1| - 0.0065 15.5 0.0 0.009 15.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|344211650|ref|YP_004795970.1| - 0.01 15.5 0.0 0.016 14.8 0.0 1.4 1 1 0 1 1 1 1 Hypothetical methyltransferase FAD_binding_7 PF03441.9 gi|344211651|ref|YP_004795971.1| - 1.4e-81 273.7 0.9 1.8e-81 273.4 0.6 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|344211651|ref|YP_004795971.1| - 8.4e-31 106.9 0.4 1.3e-30 106.2 0.3 1.3 1 0 0 1 1 1 1 DNA photolyase DUF457 PF04307.9 gi|344211652|ref|YP_004795972.1| - 1.8e-10 40.3 8.5 2.4e-10 39.9 5.9 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) FtsX PF02687.16 gi|344211652|ref|YP_004795972.1| - 0.32 10.7 2.2 1.3 8.7 0.3 2.1 1 1 1 2 2 2 0 FtsX-like permease family DUF4131 PF13567.1 gi|344211653|ref|YP_004795973.1| - 0.00078 18.8 0.4 0.0025 17.2 0.0 1.9 2 1 0 2 2 2 1 Domain of unknown function (DUF4131) DUF4345 PF14248.1 gi|344211653|ref|YP_004795973.1| - 0.083 12.3 0.8 0.78 9.2 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4345) DAO PF01266.19 gi|344211655|ref|YP_004795975.1| - 1.1e-12 47.5 0.0 8.5e-06 24.9 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|344211655|ref|YP_004795975.1| - 2.5e-10 39.8 0.0 1.6e-09 37.1 0.0 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|344211655|ref|YP_004795975.1| - 7.1e-08 31.4 0.0 0.00023 19.9 0.0 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|344211655|ref|YP_004795975.1| - 7.6e-07 29.2 0.0 1.8e-06 27.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344211655|ref|YP_004795975.1| - 3e-06 26.5 0.5 1.1e-05 24.7 0.4 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|344211655|ref|YP_004795975.1| - 9.6e-06 24.3 0.0 0.00049 18.6 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|344211655|ref|YP_004795975.1| - 1.5e-05 24.0 0.0 0.00012 21.0 0.0 2.0 1 1 1 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|344211655|ref|YP_004795975.1| - 2.6e-05 23.4 0.0 0.00022 20.4 0.0 2.1 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|344211655|ref|YP_004795975.1| - 6.8e-05 21.8 0.0 0.00065 18.6 0.0 2.0 1 1 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|344211655|ref|YP_004795975.1| - 0.00019 20.6 0.1 0.025 13.6 0.0 2.7 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|344211655|ref|YP_004795975.1| - 0.00047 20.1 0.0 0.0012 18.7 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain CPSase_L_chain PF00289.17 gi|344211655|ref|YP_004795975.1| - 0.03 14.4 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Pyr_redox_3 PF13738.1 gi|344211655|ref|YP_004795975.1| - 0.078 13.0 0.1 0.19 11.7 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|344211655|ref|YP_004795975.1| - 0.095 12.6 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_kinase PF01513.16 gi|344211656|ref|YP_004795976.1| - 1.1e-10 40.7 0.2 1.6e-10 40.2 0.1 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Peripla_BP_1 PF00532.16 gi|344211656|ref|YP_004795976.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family FA_desaturase PF00487.19 gi|344211657|ref|YP_004795977.1| - 0.011 15.2 0.5 0.013 14.9 0.3 1.3 1 0 0 1 1 1 0 Fatty acid desaturase DUF202 PF02656.10 gi|344211657|ref|YP_004795977.1| - 0.013 15.6 0.2 2.9 8.1 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF202) EBP PF05241.7 gi|344211658|ref|YP_004795978.1| - 0.15 11.1 3.0 0.1 11.6 1.4 1.3 1 1 0 1 1 1 0 Emopamil binding protein DUF2723 PF11028.3 gi|344211659|ref|YP_004795979.1| - 0.0093 15.4 1.0 0.011 15.2 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2723) DUF350 PF03994.9 gi|344211659|ref|YP_004795979.1| - 0.0094 15.6 0.6 1.6 8.5 0.0 2.1 2 0 0 2 2 2 2 Domain of Unknown Function (DUF350) DUF4282 PF14110.1 gi|344211659|ref|YP_004795979.1| - 0.11 12.6 1.0 0.16 12.1 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF1072 PF06380.6 gi|344211659|ref|YP_004795979.1| - 1.8 8.2 4.8 8 6.2 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) Cytochrom_B_C PF00032.12 gi|344211660|ref|YP_004795980.1| - 9.3e-08 32.2 1.6 1.2e-07 31.9 0.2 1.9 2 1 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD Cytochrom_B_N_2 PF13631.1 gi|344211661|ref|YP_004795981.1| - 1.9e-39 135.1 16.6 1.9e-39 135.1 9.3 2.1 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB PepSY_TM PF03929.11 gi|344211661|ref|YP_004795981.1| - 0.55 10.7 0.0 0.55 10.7 0.0 4.0 3 1 0 3 3 3 0 PepSY-associated TM helix Rieske PF00355.21 gi|344211662|ref|YP_004795982.1| - 3e-07 29.9 0.1 5.8e-07 28.9 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF1673 PF07895.6 gi|344211663|ref|YP_004795983.1| - 0.022 14.2 0.0 0.026 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) AGTRAP PF06396.6 gi|344211663|ref|YP_004795983.1| - 0.36 10.5 2.7 1.1 8.8 0.6 2.2 1 1 1 2 2 2 0 Angiotensin II, type I receptor-associated protein (AGTRAP) Copper-bind PF00127.15 gi|344211664|ref|YP_004795984.1| - 1.2e-13 51.0 0.1 3e-13 49.8 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|344211664|ref|YP_004795984.1| - 5.8 7.1 15.5 0.35 10.9 6.3 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence 7TM_GPCR_Srh PF10318.4 gi|344211666|ref|YP_004795986.1| - 0.08 11.7 1.1 0.13 11.0 0.7 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh Usp PF00582.21 gi|344211667|ref|YP_004795987.1| - 1.1e-35 122.9 0.8 1.5e-35 122.4 0.6 1.2 1 0 0 1 1 1 1 Universal stress protein family Spore_YhcN_YlaJ PF09580.5 gi|344211667|ref|YP_004795987.1| - 0.061 13.4 0.2 0.063 13.3 0.1 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HhH-GPD PF00730.20 gi|344211668|ref|YP_004795988.1| - 1.9e-20 73.1 0.0 2.5e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|344211668|ref|YP_004795988.1| - 2.8e-09 36.1 1.4 3.1e-08 32.8 0.0 2.9 2 1 1 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|344211668|ref|YP_004795988.1| - 0.0019 18.3 0.1 0.33 11.1 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|344211668|ref|YP_004795988.1| - 0.0033 17.5 1.9 0.0053 16.8 1.3 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III IMS_HHH PF11798.3 gi|344211668|ref|YP_004795988.1| - 0.014 15.4 0.0 0.043 13.8 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif DUF3349 PF11829.3 gi|344211668|ref|YP_004795988.1| - 0.018 15.4 0.0 0.034 14.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3349) Acetyltransf_3 PF13302.1 gi|344211669|ref|YP_004795989.1| - 9.5e-24 84.1 0.0 1.1e-23 83.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211669|ref|YP_004795989.1| - 3.9e-13 49.6 0.0 5e-13 49.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344211669|ref|YP_004795989.1| - 2.6e-10 40.3 0.0 3.5e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344211669|ref|YP_004795989.1| - 3.2e-09 36.6 0.0 4.7e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344211669|ref|YP_004795989.1| - 8.6e-06 25.8 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211669|ref|YP_004795989.1| - 0.00011 22.2 0.0 0.00017 21.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211669|ref|YP_004795989.1| - 0.13 12.0 0.0 0.49 10.1 0.0 1.8 2 0 0 2 2 2 0 FR47-like protein Acetyltransf_3 PF13302.1 gi|344211670|ref|YP_004795990.1| - 8.8e-31 106.9 0.0 1.1e-30 106.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211670|ref|YP_004795990.1| - 3e-17 62.9 0.0 3.5e-17 62.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344211670|ref|YP_004795990.1| - 2.3e-11 43.5 0.2 3.6e-11 42.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|344211670|ref|YP_004795990.1| - 2.9e-11 43.4 0.1 5.3e-11 42.6 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211670|ref|YP_004795990.1| - 0.0047 17.0 0.0 0.0073 16.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211670|ref|YP_004795990.1| - 0.011 15.4 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein AhpC-TSA PF00578.16 gi|344211671|ref|YP_004795991.1| - 2.8e-15 56.0 0.0 3.3e-15 55.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344211671|ref|YP_004795991.1| - 6.7e-07 28.9 0.0 8.2e-07 28.6 0.0 1.1 1 0 0 1 1 1 1 Redoxin PRC PF05239.11 gi|344211672|ref|YP_004795992.1| - 9.3e-11 41.4 1.0 1.1e-10 41.1 0.7 1.1 1 0 0 1 1 1 1 PRC-barrel domain TrkA_N PF02254.13 gi|344211673|ref|YP_004795993.1| - 1.3e-20 73.4 1.7 3.4e-20 72.1 1.1 1.8 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|344211673|ref|YP_004795993.1| - 1.1e-11 44.5 0.6 2.8e-11 43.2 0.4 1.7 1 0 0 1 1 1 1 DHH family F420_oxidored PF03807.12 gi|344211673|ref|YP_004795993.1| - 7.4e-08 32.7 0.6 3.8e-07 30.4 0.1 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|344211673|ref|YP_004795993.1| - 1.9e-06 27.4 0.0 5.4e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|344211673|ref|YP_004795993.1| - 4.7e-06 26.7 1.1 4.7e-06 26.7 0.7 2.1 2 0 0 2 2 2 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|344211673|ref|YP_004795993.1| - 1.6e-05 24.0 0.5 3e-05 23.2 0.4 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|344211673|ref|YP_004795993.1| - 2.4e-05 24.1 0.1 5.1e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|344211673|ref|YP_004795993.1| - 2.6e-05 24.1 0.0 4.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|344211673|ref|YP_004795993.1| - 3.4e-05 23.2 0.3 8e-05 22.0 0.2 1.6 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|344211673|ref|YP_004795993.1| - 9.9e-05 22.5 1.5 0.00027 21.1 0.8 1.9 1 1 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|344211673|ref|YP_004795993.1| - 0.00089 18.6 0.1 0.0027 17.1 0.1 1.9 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|344211673|ref|YP_004795993.1| - 0.0017 18.0 0.2 0.0048 16.5 0.1 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DHHA1 PF02272.14 gi|344211673|ref|YP_004795993.1| - 0.0025 17.4 0.0 0.0073 15.9 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain adh_short PF00106.20 gi|344211673|ref|YP_004795993.1| - 0.0046 16.8 1.3 0.0046 16.8 0.9 3.4 3 1 1 4 4 4 1 short chain dehydrogenase XdhC_C PF13478.1 gi|344211673|ref|YP_004795993.1| - 0.0052 17.0 0.6 0.048 13.9 0.1 2.5 2 0 0 2 2 2 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|344211673|ref|YP_004795993.1| - 0.011 15.8 0.1 0.027 14.5 0.1 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|344211673|ref|YP_004795993.1| - 0.043 12.9 0.0 0.096 11.8 0.0 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|344211673|ref|YP_004795993.1| - 0.063 13.0 4.0 0.064 13.0 1.0 2.3 2 1 0 2 2 2 0 ThiF family DAO PF01266.19 gi|344211673|ref|YP_004795993.1| - 0.067 12.0 0.8 0.14 11.0 0.2 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|344211673|ref|YP_004795993.1| - 0.075 13.0 0.5 0.21 11.6 0.1 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain 3Beta_HSD PF01073.14 gi|344211673|ref|YP_004795993.1| - 0.088 11.4 0.3 0.14 10.8 0.2 1.3 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family ADH_zinc_N PF00107.21 gi|344211673|ref|YP_004795993.1| - 0.088 12.3 0.1 0.62 9.6 0.0 2.5 3 0 0 3 3 2 0 Zinc-binding dehydrogenase Ldh_1_N PF00056.18 gi|344211673|ref|YP_004795993.1| - 0.12 12.2 1.5 0.21 11.4 0.3 1.9 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain KR PF08659.5 gi|344211673|ref|YP_004795993.1| - 0.21 11.2 3.4 0.2 11.2 0.6 2.4 2 1 0 2 2 2 0 KR domain Virul_fac_BrkB PF03631.10 gi|344211674|ref|YP_004795994.1| - 7.3e-30 104.1 33.5 8.2e-30 104.0 23.3 1.0 1 0 0 1 1 1 1 Virulence factor BrkB ABC2_membrane_3 PF12698.2 gi|344211674|ref|YP_004795994.1| - 5.1 6.0 25.3 1.2 8.1 9.9 2.5 1 1 1 2 2 2 0 ABC-2 family transporter protein Acetyltransf_1 PF00583.19 gi|344211675|ref|YP_004795995.1| - 1.8e-13 50.3 0.1 2.5e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344211675|ref|YP_004795995.1| - 2.7e-11 43.6 0.1 3.2e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211675|ref|YP_004795995.1| - 3.4e-10 39.9 0.0 4.5e-10 39.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344211675|ref|YP_004795995.1| - 1.8e-07 31.0 0.1 2.8e-07 30.4 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344211675|ref|YP_004795995.1| - 8.5e-05 22.3 0.3 0.00026 20.8 0.0 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_5 PF13444.1 gi|344211675|ref|YP_004795995.1| - 0.00059 20.3 0.1 0.0027 18.2 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211675|ref|YP_004795995.1| - 0.0031 17.2 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein DUF3749 PF12568.3 gi|344211675|ref|YP_004795995.1| - 0.021 14.3 0.0 0.03 13.8 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Dus PF01207.12 gi|344211675|ref|YP_004795995.1| - 0.11 11.3 0.0 0.18 10.5 0.0 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Zn-ribbon_8 PF09723.5 gi|344211677|ref|YP_004795997.1| - 0.0086 16.0 3.1 0.01 15.7 2.1 1.1 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|344211677|ref|YP_004795997.1| - 0.029 14.2 0.3 0.045 13.6 0.2 1.4 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|344211677|ref|YP_004795997.1| - 0.046 13.3 0.1 0.046 13.3 0.1 1.7 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|344211677|ref|YP_004795997.1| - 0.3 11.5 0.5 0.3 11.5 0.4 1.7 2 0 0 2 2 2 0 Zinc finger, C2H2 type IMPDH PF00478.20 gi|344211678|ref|YP_004795998.1| - 1.5e-130 435.2 8.2 1.7e-130 435.0 5.7 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|344211678|ref|YP_004795998.1| - 7e-28 96.1 4.9 1.6e-15 56.5 0.4 2.7 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|344211678|ref|YP_004795998.1| - 1.7e-14 53.7 5.6 9.6e-07 28.2 2.1 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|344211678|ref|YP_004795998.1| - 1.4e-09 37.3 2.9 1.4e-09 37.3 2.0 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|344211678|ref|YP_004795998.1| - 7.2e-05 21.9 1.4 7.2e-05 21.9 1.0 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|344211678|ref|YP_004795998.1| - 0.00014 20.9 2.6 0.00014 20.9 0.9 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|344211678|ref|YP_004795998.1| - 0.00017 20.6 5.0 0.00017 20.6 3.4 1.7 2 0 0 2 2 2 1 Conserved region in glutamate synthase His_biosynth PF00977.16 gi|344211678|ref|YP_004795998.1| - 0.00023 20.4 2.5 0.0009 18.5 0.1 2.3 1 1 1 2 2 2 1 Histidine biosynthesis protein Dus PF01207.12 gi|344211678|ref|YP_004795998.1| - 0.0013 17.6 0.2 0.0013 17.6 0.1 2.3 3 0 0 3 3 3 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|344211678|ref|YP_004795998.1| - 0.024 13.8 0.4 0.024 13.8 0.3 2.6 3 0 0 3 3 3 0 PcrB family Trypsin_2 PF13365.1 gi|344211678|ref|YP_004795998.1| - 0.053 13.4 0.3 0.58 10.1 0.0 2.6 3 0 0 3 3 3 0 Trypsin-like peptidase domain HET-s_218-289 PF11558.3 gi|344211678|ref|YP_004795998.1| - 0.059 13.3 0.6 0.15 12.0 0.4 1.6 1 0 0 1 1 1 0 Het-s 218-289 IGPS PF00218.16 gi|344211678|ref|YP_004795998.1| - 0.069 12.1 0.6 1.5 7.8 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|344211678|ref|YP_004795998.1| - 0.086 11.3 3.1 1.2 7.6 0.1 2.5 2 0 0 2 2 2 0 Tryptophan synthase alpha chain DZR PF12773.2 gi|344211680|ref|YP_004796000.1| - 0.025 14.3 0.4 0.037 13.8 0.3 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344211680|ref|YP_004796000.1| - 0.046 12.9 1.0 0.22 10.7 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344211680|ref|YP_004796000.1| - 0.061 13.2 3.6 0.82 9.6 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain UPF1_Zn_bind PF09416.5 gi|344211680|ref|YP_004796000.1| - 0.12 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) zf-C4_Topoisom PF01396.14 gi|344211680|ref|YP_004796000.1| - 0.4 10.2 0.2 0.4 10.2 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1610 PF07754.6 gi|344211680|ref|YP_004796000.1| - 6.7 6.9 6.6 4.1 7.6 1.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Pro_CA PF00484.14 gi|344211681|ref|YP_004796001.1| - 3e-27 95.5 0.1 4e-27 95.0 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase CM_2 PF01817.16 gi|344211682|ref|YP_004796002.1| - 1.7e-17 63.2 4.1 1.9e-17 63.1 2.8 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF4404 PF14357.1 gi|344211682|ref|YP_004796002.1| - 0.032 14.6 1.6 0.044 14.2 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) DUF853 PF05872.7 gi|344211682|ref|YP_004796002.1| - 0.041 12.2 0.2 0.047 12.0 0.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Cytidylate_kin2 PF13189.1 gi|344211682|ref|YP_004796002.1| - 0.095 12.5 0.5 0.12 12.3 0.3 1.1 1 0 0 1 1 1 0 Cytidylate kinase-like family RGS-like PF09128.6 gi|344211682|ref|YP_004796002.1| - 0.27 10.7 2.1 0.33 10.4 1.5 1.2 1 0 0 1 1 1 0 Regulator of G protein signalling-like domain GHMP_kinases_N PF00288.21 gi|344211683|ref|YP_004796003.1| - 1.3e-11 44.3 0.9 3.2e-11 43.1 0.6 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF3955 PF13127.1 gi|344211684|ref|YP_004796004.1| - 0.38 10.3 0.2 0.38 10.3 0.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3955) 2Fe-2S_Ferredox PF11591.3 gi|344211684|ref|YP_004796004.1| - 8.2 6.1 7.2 0.67 9.6 1.5 1.8 2 0 0 2 2 2 0 Ferredoxin chloroplastic transit peptide DUF1469 PF07332.6 gi|344211685|ref|YP_004796005.1| - 0.092 12.4 1.6 0.081 12.6 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) TrkA_N PF02254.13 gi|344211686|ref|YP_004796006.1| - 9.2e-30 103.0 0.9 1.9e-29 101.9 0.6 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|344211686|ref|YP_004796006.1| - 6.2e-18 64.1 0.6 2.8e-16 58.8 0.0 2.7 3 0 0 3 3 3 1 TrkA-C domain F420_oxidored PF03807.12 gi|344211686|ref|YP_004796006.1| - 7.2e-06 26.3 0.1 2.1e-05 24.8 0.1 1.9 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|344211686|ref|YP_004796006.1| - 6.2e-05 23.0 0.3 9.3e-05 22.5 0.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|344211686|ref|YP_004796006.1| - 0.00031 20.4 0.1 0.00043 19.9 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|344211686|ref|YP_004796006.1| - 0.00039 20.7 0.1 0.00057 20.2 0.1 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|344211686|ref|YP_004796006.1| - 0.00065 18.7 0.2 0.00081 18.4 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase ADH_zinc_N PF00107.21 gi|344211686|ref|YP_004796006.1| - 0.0016 18.0 0.0 0.077 12.5 0.1 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Peripla_BP_3 PF13377.1 gi|344211686|ref|YP_004796006.1| - 0.0022 18.0 0.2 0.0032 17.4 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein-like domain ApbA PF02558.11 gi|344211686|ref|YP_004796006.1| - 0.0024 17.3 0.0 0.0035 16.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|344211686|ref|YP_004796006.1| - 0.003 16.9 0.4 0.28 10.5 0.0 2.2 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NmrA PF05368.8 gi|344211686|ref|YP_004796006.1| - 0.0041 16.4 0.0 0.0066 15.7 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_7 PF13241.1 gi|344211686|ref|YP_004796006.1| - 0.0081 16.4 0.1 0.015 15.5 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|344211686|ref|YP_004796006.1| - 0.013 14.6 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|344211686|ref|YP_004796006.1| - 0.015 15.6 0.3 0.076 13.4 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.17 gi|344211686|ref|YP_004796006.1| - 0.02 15.3 0.6 0.04 14.4 0.4 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|344211686|ref|YP_004796006.1| - 0.035 13.9 0.0 0.072 12.9 0.0 1.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Methyltransf_18 PF12847.2 gi|344211686|ref|YP_004796006.1| - 0.043 14.3 0.1 0.064 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Shikimate_DH PF01488.15 gi|344211686|ref|YP_004796006.1| - 0.055 13.5 0.1 0.1 12.6 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkH PF02386.11 gi|344211687|ref|YP_004796007.1| - 4e-78 262.4 8.6 4e-78 262.4 5.9 1.9 2 0 0 2 2 2 1 Cation transport protein DUF2897 PF11446.3 gi|344211687|ref|YP_004796007.1| - 7.2 6.5 5.6 6.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2897) TrkH PF02386.11 gi|344211689|ref|YP_004796009.1| - 1.2e-51 175.3 20.0 4.3e-50 170.2 8.3 2.3 2 0 0 2 2 2 2 Cation transport protein TrbC PF04956.8 gi|344211689|ref|YP_004796009.1| - 1.4 9.0 10.1 1.3 9.0 1.5 4.0 2 1 0 2 2 2 0 TrbC/VIRB2 family Usp PF00582.21 gi|344211690|ref|YP_004796010.1| - 5.3e-10 39.6 0.5 6.4e-10 39.3 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family DUF839 PF05787.8 gi|344211693|ref|YP_004796013.1| - 7.3e-17 61.4 12.4 5.5e-14 51.9 6.7 3.6 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) EF-hand_7 PF13499.1 gi|344211693|ref|YP_004796013.1| - 0.0043 17.1 1.4 0.017 15.2 0.7 2.2 2 0 0 2 2 2 1 EF-hand domain pair EF-hand_1 PF00036.27 gi|344211693|ref|YP_004796013.1| - 0.0091 15.2 4.4 1.7 8.1 0.1 3.4 3 0 0 3 3 3 2 EF hand EF-hand_6 PF13405.1 gi|344211693|ref|YP_004796013.1| - 0.011 15.4 2.6 3.6 7.7 0.0 3.1 2 0 0 2 2 2 0 EF-hand domain EF-hand_5 PF13202.1 gi|344211693|ref|YP_004796013.1| - 0.72 9.3 3.7 8.7 5.8 0.0 3.0 3 0 0 3 3 3 0 EF hand PadR PF03551.9 gi|344211695|ref|YP_004796015.1| - 1.6e-07 30.9 0.0 2.3e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|344211695|ref|YP_004796015.1| - 0.0041 16.9 0.0 0.0049 16.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF3116 PF11313.3 gi|344211695|ref|YP_004796015.1| - 0.013 15.0 0.0 0.021 14.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) DUF505 PF04458.7 gi|344211695|ref|YP_004796015.1| - 0.014 13.5 0.0 0.015 13.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_34 PF13601.1 gi|344211695|ref|YP_004796015.1| - 0.066 13.2 0.0 0.1 12.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|344211695|ref|YP_004796015.1| - 0.08 13.2 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain SelB-wing_2 PF09106.6 gi|344211695|ref|YP_004796015.1| - 0.086 12.7 0.0 0.15 12.0 0.0 1.5 1 1 0 1 1 1 0 Elongation factor SelB, winged helix Acyl-CoA_dh_1 PF00441.19 gi|344211697|ref|YP_004796017.1| - 1.4e-50 171.2 1.3 2.4e-50 170.5 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344211697|ref|YP_004796017.1| - 1.5e-36 125.3 1.6 2.1e-36 124.9 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|344211697|ref|YP_004796017.1| - 2.9e-24 85.8 1.8 4.8e-24 85.1 1.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344211697|ref|YP_004796017.1| - 7.2e-18 63.8 0.2 4.6e-17 61.2 0.1 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain 3HCDH_N PF02737.13 gi|344211698|ref|YP_004796018.1| - 1.8e-63 213.4 4.2 2.2e-63 213.1 2.9 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|344211698|ref|YP_004796018.1| - 1.3e-32 111.9 0.6 2.7e-31 107.8 0.0 2.6 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|344211698|ref|YP_004796018.1| - 1.3e-05 25.1 6.3 0.00013 21.8 4.4 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|344211698|ref|YP_004796018.1| - 8.9e-05 22.2 0.3 0.00015 21.5 0.2 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|344211698|ref|YP_004796018.1| - 0.006 16.9 2.6 0.023 15.0 1.8 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|344211698|ref|YP_004796018.1| - 0.011 14.9 0.9 0.019 14.1 0.6 1.4 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|344211698|ref|YP_004796018.1| - 0.039 13.4 0.1 0.055 12.9 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|344211698|ref|YP_004796018.1| - 0.058 12.7 0.9 0.089 12.1 0.6 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|344211698|ref|YP_004796018.1| - 0.097 12.9 0.4 0.15 12.3 0.3 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain FBPase PF00316.15 gi|344211699|ref|YP_004796019.1| - 1.6e-67 227.6 0.0 1.9e-67 227.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|344211699|ref|YP_004796019.1| - 0.053 12.8 0.1 0.11 11.7 0.1 1.5 2 0 0 2 2 2 0 Inositol monophosphatase family PKD PF00801.15 gi|344211700|ref|YP_004796020.1| - 5.1e-11 42.1 11.0 7.3e-11 41.6 3.0 3.7 3 0 0 3 3 3 1 PKD domain Big_3_4 PF13754.1 gi|344211700|ref|YP_004796020.1| - 1.2e-05 25.5 6.7 0.0041 17.4 4.5 7.3 6 1 1 7 7 7 3 Bacterial Ig-like domain (group 3) Big_3_3 PF13750.1 gi|344211700|ref|YP_004796020.1| - 0.0013 18.1 2.8 0.011 15.1 0.0 3.2 2 1 0 3 3 3 1 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.7 gi|344211700|ref|YP_004796020.1| - 0.0079 16.0 0.1 0.21 11.5 0.0 3.4 4 0 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family ELFV_dehydrog PF00208.16 gi|344211702|ref|YP_004796022.1| - 9.7e-73 244.7 1.2 1.2e-72 244.4 0.8 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|344211702|ref|YP_004796022.1| - 2.5e-52 175.8 0.0 3.7e-52 175.3 0.0 1.2 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|344211702|ref|YP_004796022.1| - 0.00043 19.4 0.0 0.00083 18.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|344211702|ref|YP_004796022.1| - 0.0036 16.9 0.1 0.008 15.7 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Malic_M PF03949.10 gi|344211702|ref|YP_004796022.1| - 0.053 13.0 0.3 0.073 12.6 0.2 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain DUF4251 PF14059.1 gi|344211702|ref|YP_004796022.1| - 0.084 12.6 0.4 1.6 8.5 0.0 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4251) IlvN PF07991.7 gi|344211702|ref|YP_004796022.1| - 0.095 12.0 0.1 0.15 11.3 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Polyketide_cyc PF03364.15 gi|344211703|ref|YP_004796023.1| - 2e-07 31.0 0.0 2.8e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|344211703|ref|YP_004796023.1| - 0.00014 22.0 0.1 0.00016 21.8 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport EamA PF00892.15 gi|344211704|ref|YP_004796024.1| - 2.6e-26 92.1 22.3 1.5e-13 50.8 4.4 2.4 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|344211704|ref|YP_004796024.1| - 1e-05 25.6 8.3 1e-05 25.6 5.8 3.5 2 2 1 3 3 3 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|344211704|ref|YP_004796024.1| - 0.29 9.9 4.5 0.12 11.2 1.0 1.8 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF914) RIO1 PF01163.17 gi|344211705|ref|YP_004796025.1| - 7e-10 38.5 0.0 1e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|344211705|ref|YP_004796025.1| - 2.6e-06 27.3 0.7 0.019 14.6 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|344211705|ref|YP_004796025.1| - 4.5e-06 25.8 0.0 6.9e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|344211705|ref|YP_004796025.1| - 0.066 12.3 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain WaaY PF06176.6 gi|344211705|ref|YP_004796025.1| - 0.078 12.1 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Acyl-CoA_dh_1 PF00441.19 gi|344211706|ref|YP_004796026.1| - 1e-46 158.7 0.3 1.4e-46 158.2 0.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344211706|ref|YP_004796026.1| - 2.8e-36 124.5 0.1 5.4e-36 123.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344211706|ref|YP_004796026.1| - 4.7e-20 70.8 1.0 4e-19 67.8 0.1 2.7 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|344211706|ref|YP_004796026.1| - 2e-16 60.4 0.4 3.2e-16 59.7 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Usp PF00582.21 gi|344211707|ref|YP_004796027.1| - 1.7e-14 54.2 4.9 1.9e-14 54.0 3.4 1.0 1 0 0 1 1 1 1 Universal stress protein family RtcB PF01139.12 gi|344211708|ref|YP_004796028.1| - 8.2e-110 367.6 0.0 1.1e-109 367.2 0.0 1.2 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.7 gi|344211709|ref|YP_004796029.1| - 7.3e-09 35.9 8.5 7.3e-09 35.9 5.9 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.8 gi|344211709|ref|YP_004796029.1| - 6.9e-05 22.5 9.9 0.00036 20.2 6.9 1.9 1 1 0 1 1 1 1 TQO small subunit DoxD VKG_Carbox PF05090.9 gi|344211709|ref|YP_004796029.1| - 0.37 9.6 2.6 0.22 10.3 0.5 1.5 1 1 1 2 2 2 0 Vitamin K-dependent gamma-carboxylase T2SM PF04612.7 gi|344211710|ref|YP_004796030.1| - 0.22 11.3 2.4 0.56 9.9 0.1 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF457 PF04307.9 gi|344211711|ref|YP_004796031.1| - 1.9e-10 40.2 1.0 2.2e-10 40.0 0.7 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CDP-OH_P_transf PF01066.16 gi|344211712|ref|YP_004796032.1| - 5.3e-10 39.5 8.0 5.3e-10 39.5 5.5 2.2 3 1 0 3 3 3 1 CDP-alcohol phosphatidyltransferase Abhydrolase_6 PF12697.2 gi|344211713|ref|YP_004796033.1| - 1.2e-27 97.2 9.9 1.4e-27 97.0 6.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344211713|ref|YP_004796033.1| - 1.1e-14 54.3 1.2 3.6e-14 52.7 0.9 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344211713|ref|YP_004796033.1| - 7e-10 38.8 0.1 5.4e-06 26.1 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Thioesterase PF00975.15 gi|344211713|ref|YP_004796033.1| - 0.0093 16.2 0.2 0.011 15.9 0.1 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.5 gi|344211713|ref|YP_004796033.1| - 0.015 15.1 0.1 0.045 13.6 0.0 1.9 2 1 0 2 2 2 0 TAP-like protein FSH1 PF03959.8 gi|344211713|ref|YP_004796033.1| - 0.16 11.3 0.0 0.46 9.9 0.0 1.8 2 1 0 2 2 2 0 Serine hydrolase (FSH1) AAA PF00004.24 gi|344211715|ref|YP_004796035.1| - 2.8e-100 331.7 0.0 1.9e-49 167.2 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|344211715|ref|YP_004796035.1| - 3.6e-25 87.7 0.0 2.5e-24 85.0 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|344211715|ref|YP_004796035.1| - 1.4e-18 67.3 0.1 1.7e-09 37.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|344211715|ref|YP_004796035.1| - 5.9e-16 58.2 0.0 8e-08 31.6 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|344211715|ref|YP_004796035.1| - 3.3e-15 55.4 0.3 8.3e-15 54.1 0.2 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|344211715|ref|YP_004796035.1| - 2.8e-14 53.5 0.0 2.6e-07 30.8 0.0 3.7 3 1 1 4 4 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|344211715|ref|YP_004796035.1| - 7.5e-13 48.7 0.1 0.00014 21.9 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|344211715|ref|YP_004796035.1| - 9.8e-12 44.9 0.0 4e-05 23.5 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|344211715|ref|YP_004796035.1| - 2.1e-11 43.8 0.0 0.00023 21.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|344211715|ref|YP_004796035.1| - 2.4e-11 43.5 1.2 6.8e-05 22.6 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|344211715|ref|YP_004796035.1| - 1.5e-10 41.9 0.1 0.00058 20.6 0.0 3.1 2 1 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|344211715|ref|YP_004796035.1| - 7e-10 38.1 0.0 0.00016 20.5 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_19 PF13245.1 gi|344211715|ref|YP_004796035.1| - 1.4e-09 37.5 0.3 0.0022 17.7 0.0 3.3 3 0 0 3 3 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|344211715|ref|YP_004796035.1| - 1.7e-09 37.0 0.0 0.001 18.2 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|344211715|ref|YP_004796035.1| - 2.4e-09 36.8 0.0 0.00052 19.4 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|344211715|ref|YP_004796035.1| - 1.9e-07 31.2 0.0 0.027 14.6 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|344211715|ref|YP_004796035.1| - 4.1e-07 29.3 0.4 0.012 14.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|344211715|ref|YP_004796035.1| - 6.1e-07 28.6 0.0 0.0022 16.9 0.0 3.0 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|344211715|ref|YP_004796035.1| - 1.5e-06 28.2 0.0 0.036 14.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|344211715|ref|YP_004796035.1| - 1.9e-06 27.6 0.0 0.4 10.3 0.0 3.7 4 0 0 4 4 3 2 NACHT domain KaiC PF06745.8 gi|344211715|ref|YP_004796035.1| - 2.3e-06 26.9 0.1 0.22 10.6 0.0 3.7 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.6 gi|344211715|ref|YP_004796035.1| - 2.8e-06 26.9 0.0 0.027 14.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|344211715|ref|YP_004796035.1| - 3.3e-06 27.4 0.1 0.059 13.6 0.0 3.0 2 1 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|344211715|ref|YP_004796035.1| - 3.3e-06 26.4 0.1 0.025 13.8 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.1 gi|344211715|ref|YP_004796035.1| - 3.9e-06 26.4 6.5 0.56 9.5 0.0 4.3 2 2 2 4 4 4 2 AAA domain Sigma54_activat PF00158.21 gi|344211715|ref|YP_004796035.1| - 7e-06 25.6 0.0 0.16 11.4 0.0 3.4 4 0 0 4 4 3 2 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|344211715|ref|YP_004796035.1| - 1.4e-05 25.1 0.0 0.58 10.2 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|344211715|ref|YP_004796035.1| - 1.8e-05 25.0 0.0 0.14 12.4 0.0 2.7 2 0 0 2 2 2 2 ABC transporter NB-ARC PF00931.17 gi|344211715|ref|YP_004796035.1| - 2.7e-05 23.1 0.0 0.12 11.1 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|344211715|ref|YP_004796035.1| - 2.8e-05 23.9 0.0 0.54 9.9 0.0 3.3 2 1 1 3 3 3 2 Archaeal ATPase DUF2075 PF09848.4 gi|344211715|ref|YP_004796035.1| - 3.6e-05 22.9 0.0 0.18 10.7 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|344211715|ref|YP_004796035.1| - 6.1e-05 22.7 0.0 0.069 12.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344211715|ref|YP_004796035.1| - 8.3e-05 22.2 0.0 0.26 10.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|344211715|ref|YP_004796035.1| - 9.4e-05 22.0 0.0 0.27 10.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|344211715|ref|YP_004796035.1| - 0.00017 21.3 1.5 0.46 10.1 0.0 3.8 2 2 1 3 3 3 1 NTPase Parvo_NS1 PF01057.12 gi|344211715|ref|YP_004796035.1| - 0.00018 20.4 0.1 0.52 9.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 UPF0079 PF02367.12 gi|344211715|ref|YP_004796035.1| - 0.00031 20.3 0.0 0.94 9.1 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|344211715|ref|YP_004796035.1| - 0.00037 20.1 0.0 0.22 11.1 0.0 2.5 2 1 0 2 2 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|344211715|ref|YP_004796035.1| - 0.00066 18.6 0.0 0.85 8.4 0.0 3.0 3 0 0 3 3 3 1 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|344211715|ref|YP_004796035.1| - 0.003 17.1 0.1 0.36 10.3 0.0 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.10 gi|344211715|ref|YP_004796035.1| - 0.0034 17.2 0.0 2 8.1 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|344211715|ref|YP_004796035.1| - 0.0061 16.0 0.6 12 5.3 0.0 3.6 2 2 1 3 3 3 0 DEAD/DEAH box helicase Guanylate_kin PF00625.16 gi|344211715|ref|YP_004796035.1| - 0.018 14.4 0.2 27 4.1 0.0 3.7 2 1 1 3 3 3 0 Guanylate kinase SKI PF01202.17 gi|344211715|ref|YP_004796035.1| - 0.033 14.0 0.0 5.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase KTI12 PF08433.5 gi|344211715|ref|YP_004796035.1| - 0.044 12.9 0.0 9.6 5.3 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AFG1_ATPase PF03969.11 gi|344211715|ref|YP_004796035.1| - 0.046 12.5 0.0 5.1 5.7 0.0 2.7 3 0 0 3 3 2 0 AFG1-like ATPase KAP_NTPase PF07693.9 gi|344211715|ref|YP_004796035.1| - 0.049 12.6 0.0 5.3 5.9 0.0 2.9 2 1 1 3 3 3 0 KAP family P-loop domain HJURP_C PF12347.3 gi|344211715|ref|YP_004796035.1| - 0.075 12.6 1.5 0.1 12.1 0.1 2.0 3 0 0 3 3 1 0 Holliday junction regulator protein family C-terminal repeat Torsin PF06309.6 gi|344211715|ref|YP_004796035.1| - 0.09 12.6 0.0 4.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Torsin PIF1 PF05970.9 gi|344211715|ref|YP_004796035.1| - 0.092 11.6 0.0 2.7 6.8 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Cytidylate_kin2 PF13189.1 gi|344211715|ref|YP_004796035.1| - 0.093 12.6 0.4 5.4 6.8 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase-like family Viral_helicase1 PF01443.13 gi|344211715|ref|YP_004796035.1| - 0.12 11.8 0.0 14 5.1 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.7 gi|344211715|ref|YP_004796035.1| - 0.13 11.7 0.3 28 4.1 0.1 3.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) Vps4_C PF09336.5 gi|344211715|ref|YP_004796035.1| - 0.13 12.1 0.1 1.1 9.1 0.0 2.5 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain Regulator_TrmB PF11495.3 gi|344211716|ref|YP_004796036.1| - 6.6e-57 192.1 0.0 7.4e-57 192.0 0.0 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HisKA PF00512.20 gi|344211717|ref|YP_004796037.1| - 4e-11 42.7 2.2 4e-11 42.7 1.5 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|344211717|ref|YP_004796037.1| - 6.1e-10 39.7 0.2 3.4e-09 37.3 0.0 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|344211717|ref|YP_004796037.1| - 4.4e-06 26.8 0.1 1.1e-05 25.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|344211717|ref|YP_004796037.1| - 7.5e-06 25.9 0.0 6.1e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain GAF PF01590.21 gi|344211717|ref|YP_004796037.1| - 0.0054 16.8 1.4 0.027 14.6 0.1 2.5 2 0 0 2 2 2 1 GAF domain DUF420 PF04238.7 gi|344211718|ref|YP_004796038.1| - 3.9e-36 123.9 5.5 6e-36 123.3 3.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|344211718|ref|YP_004796038.1| - 1.5e-05 25.0 1.2 1.5e-05 25.0 0.9 2.4 2 1 1 3 3 3 1 Predicted membrane protein (DUF2306) Acetyltransf_3 PF13302.1 gi|344211719|ref|YP_004796039.1| - 8e-24 84.4 0.0 9.6e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211719|ref|YP_004796039.1| - 5.7e-14 52.3 0.0 1.7e-13 50.8 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344211719|ref|YP_004796039.1| - 1.9e-08 34.2 0.0 3.6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|344211719|ref|YP_004796039.1| - 3.7e-05 23.6 0.0 5.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211719|ref|YP_004796039.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein GATase_6 PF13522.1 gi|344211720|ref|YP_004796040.1| - 1.2e-20 73.7 0.0 2.6e-20 72.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|344211720|ref|YP_004796040.1| - 3.6e-20 71.9 0.0 7.7e-20 70.8 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|344211720|ref|YP_004796040.1| - 5.2e-19 68.1 0.0 8.8e-13 47.6 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|344211720|ref|YP_004796040.1| - 1.3e-12 47.4 0.1 4.1e-12 45.9 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|344211720|ref|YP_004796040.1| - 0.0011 17.7 0.0 0.0019 16.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|344211721|ref|YP_004796041.1| - 2.8e-25 87.8 13.7 3e-25 87.7 9.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|344211721|ref|YP_004796041.1| - 0.00076 19.2 3.1 0.00091 19.0 2.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2616 PF11077.3 gi|344211721|ref|YP_004796041.1| - 0.021 14.3 0.3 0.023 14.2 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) zf-ribbon_3 PF13248.1 gi|344211721|ref|YP_004796041.1| - 0.025 13.8 4.7 1.1 8.5 0.1 2.1 1 1 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|344211721|ref|YP_004796041.1| - 0.082 12.5 4.6 0.099 12.3 3.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain FYVE_2 PF02318.11 gi|344211721|ref|YP_004796041.1| - 0.12 12.2 3.5 0.14 12.0 2.4 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger HypA PF01155.14 gi|344211721|ref|YP_004796041.1| - 0.13 11.9 2.3 0.15 11.7 1.6 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|344211721|ref|YP_004796041.1| - 0.13 11.3 2.8 2.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Baculo_ME53 PF06061.6 gi|344211721|ref|YP_004796041.1| - 0.2 10.6 3.8 0.2 10.6 2.6 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 Zn_Tnp_IS91 PF14319.1 gi|344211721|ref|YP_004796041.1| - 0.21 11.1 3.3 0.23 11.0 2.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1258 PF06869.7 gi|344211721|ref|YP_004796041.1| - 0.31 10.0 2.4 0.36 9.8 1.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-piccolo PF05715.8 gi|344211721|ref|YP_004796041.1| - 0.42 10.6 6.1 5.3 7.1 4.2 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zf-C3HC4 PF00097.20 gi|344211721|ref|YP_004796041.1| - 0.52 10.0 4.2 0.64 9.7 2.9 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|344211721|ref|YP_004796041.1| - 0.56 9.7 6.3 3.2 7.3 4.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|344211721|ref|YP_004796041.1| - 1.1 9.2 6.1 1 9.3 2.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|344211721|ref|YP_004796041.1| - 1.2 8.8 5.7 3.7 7.3 0.3 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|344211721|ref|YP_004796041.1| - 1.4 8.5 9.7 4.3 6.9 1.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO LSM PF01423.17 gi|344211722|ref|YP_004796042.1| - 1.5e-15 56.4 0.4 2.2e-15 55.9 0.3 1.3 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|344211722|ref|YP_004796042.1| - 0.00011 22.0 0.7 0.0022 17.8 0.1 2.0 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF2642 PF10842.3 gi|344211722|ref|YP_004796042.1| - 0.034 13.6 0.1 0.055 12.9 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2642) BPL_C PF02237.12 gi|344211722|ref|YP_004796042.1| - 0.15 11.7 0.6 0.21 11.2 0.4 1.4 1 1 0 1 1 1 0 Biotin protein ligase C terminal domain Peptidase_M42 PF05343.9 gi|344211723|ref|YP_004796043.1| - 1.2e-77 260.5 2.5 1.4e-77 260.3 1.8 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|344211723|ref|YP_004796043.1| - 4.2e-13 49.2 1.0 6.4e-13 48.6 0.7 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|344211723|ref|YP_004796043.1| - 5.9e-06 25.0 0.0 0.0044 15.5 0.0 2.3 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Tubulin_2 PF13809.1 gi|344211724|ref|YP_004796044.1| - 0.018 14.0 0.0 0.018 13.9 0.0 1.0 1 0 0 1 1 1 0 Tubulin like DUF2342 PF10103.4 gi|344211725|ref|YP_004796045.1| - 2e-88 296.6 4.1 6.7e-50 169.9 0.3 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|344211725|ref|YP_004796045.1| - 0.054 13.5 0.9 0.14 12.2 0.7 1.6 1 1 0 1 1 1 0 Peptidase MA superfamily HrcA_DNA-bdg PF03444.10 gi|344211726|ref|YP_004796046.1| - 5.8e-29 99.3 0.0 8.4e-29 98.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.7 gi|344211726|ref|YP_004796046.1| - 3.9e-08 32.8 0.0 6.1e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|344211726|ref|YP_004796046.1| - 3.2e-07 30.3 0.0 7.1e-07 29.2 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.14 gi|344211726|ref|YP_004796046.1| - 0.00024 20.7 0.0 0.00047 19.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|344211726|ref|YP_004796046.1| - 0.023 14.4 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344211726|ref|YP_004796046.1| - 0.041 13.4 0.2 0.071 12.7 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_15 PF12324.3 gi|344211726|ref|YP_004796046.1| - 0.043 13.4 0.1 0.092 12.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_24 PF13412.1 gi|344211726|ref|YP_004796046.1| - 0.049 13.0 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2299 PF10061.4 gi|344211726|ref|YP_004796046.1| - 0.06 12.7 0.1 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) Phage_rep_org_N PF09681.5 gi|344211726|ref|YP_004796046.1| - 0.12 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Phosphodiest PF01663.17 gi|344211727|ref|YP_004796047.1| - 1.4e-36 126.6 0.0 4.3e-36 125.0 0.0 1.6 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|344211727|ref|YP_004796047.1| - 0.17 11.2 0.0 0.77 9.0 0.0 1.9 2 0 0 2 2 2 0 Metalloenzyme superfamily RNA_pol_Rpb2_5 PF04567.12 gi|344211728|ref|YP_004796048.1| - 0.099 12.6 0.3 11 6.1 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 5 zf-C2H2 PF00096.21 gi|344211729|ref|YP_004796049.1| - 0.001 19.2 0.3 0.0014 18.8 0.2 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.3 gi|344211729|ref|YP_004796049.1| - 0.003 17.6 0.2 0.0044 17.1 0.2 1.2 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.2 gi|344211729|ref|YP_004796049.1| - 0.0046 17.1 0.1 0.006 16.7 0.1 1.2 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_4 PF13894.1 gi|344211729|ref|YP_004796049.1| - 0.034 14.4 0.1 0.044 14.1 0.1 1.2 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2_3 PF13878.1 gi|344211729|ref|YP_004796049.1| - 0.039 13.5 3.8 0.058 12.9 2.6 1.4 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO DUF4379 PF14311.1 gi|344211729|ref|YP_004796049.1| - 0.071 12.9 0.1 0.077 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) C1_1 PF00130.17 gi|344211729|ref|YP_004796049.1| - 0.12 12.1 0.2 0.14 11.9 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_3 PF07649.7 gi|344211729|ref|YP_004796049.1| - 0.14 12.2 0.2 0.25 11.4 0.0 1.6 2 0 0 2 2 2 0 C1-like domain AAA PF00004.24 gi|344211730|ref|YP_004796050.1| - 7e-94 311.0 0.0 1.1e-45 155.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|344211730|ref|YP_004796050.1| - 2.7e-20 72.1 0.3 1.5e-19 69.6 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|344211730|ref|YP_004796050.1| - 2.2e-15 56.3 0.1 8.7e-07 28.2 0.0 3.1 2 2 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|344211730|ref|YP_004796050.1| - 2.4e-14 53.7 1.8 1.8e-05 24.7 0.0 3.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|344211730|ref|YP_004796050.1| - 2.3e-13 50.3 0.6 0.00029 20.9 0.0 4.3 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|344211730|ref|YP_004796050.1| - 1.5e-12 47.7 0.0 4e-06 26.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|344211730|ref|YP_004796050.1| - 5.3e-12 45.8 0.0 0.00013 21.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|344211730|ref|YP_004796050.1| - 5.8e-11 43.2 0.3 0.00069 20.4 0.0 2.9 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|344211730|ref|YP_004796050.1| - 1e-10 41.4 1.3 0.00042 20.0 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|344211730|ref|YP_004796050.1| - 2.5e-10 39.9 0.7 0.00053 19.6 0.0 3.4 2 1 0 2 2 2 2 Part of AAA domain TIP49 PF06068.8 gi|344211730|ref|YP_004796050.1| - 5.2e-09 35.2 0.0 0.0022 16.7 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|344211730|ref|YP_004796050.1| - 6.3e-09 35.8 0.0 0.00093 19.1 0.0 2.7 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|344211730|ref|YP_004796050.1| - 3.2e-08 33.6 0.4 0.0033 17.4 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.1 gi|344211730|ref|YP_004796050.1| - 3.7e-08 33.7 0.0 0.0058 16.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|344211730|ref|YP_004796050.1| - 4.7e-08 32.3 0.0 0.00029 19.9 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|344211730|ref|YP_004796050.1| - 1e-07 31.5 0.0 0.016 14.6 0.0 2.7 2 1 1 3 3 3 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|344211730|ref|YP_004796050.1| - 1.5e-06 28.3 0.0 0.084 13.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|344211730|ref|YP_004796050.1| - 1.7e-06 28.1 0.0 0.049 13.6 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|344211730|ref|YP_004796050.1| - 1.8e-06 27.2 0.2 0.047 12.8 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|344211730|ref|YP_004796050.1| - 2e-06 27.5 0.3 2 8.0 0.0 4.1 4 0 0 4 4 4 2 NACHT domain Sigma54_activat PF00158.21 gi|344211730|ref|YP_004796050.1| - 2.5e-06 27.0 0.0 0.27 10.7 0.0 3.7 3 1 0 3 3 3 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|344211730|ref|YP_004796050.1| - 2.9e-06 26.3 0.0 0.00082 18.3 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|344211730|ref|YP_004796050.1| - 3.4e-06 26.5 10.1 0.83 9.0 0.1 4.7 2 2 3 5 5 5 2 AAA domain AAA_3 PF07726.6 gi|344211730|ref|YP_004796050.1| - 2.8e-05 23.7 0.0 0.083 12.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|344211730|ref|YP_004796050.1| - 5.1e-05 23.5 0.0 0.5 10.6 0.0 2.6 2 0 0 2 2 2 2 ABC transporter PhoH PF02562.11 gi|344211730|ref|YP_004796050.1| - 6.2e-05 22.3 0.8 0.39 9.9 0.0 3.1 4 0 0 4 4 3 2 PhoH-like protein Arch_ATPase PF01637.13 gi|344211730|ref|YP_004796050.1| - 9.3e-05 22.2 0.0 0.19 11.4 0.0 2.8 2 1 0 2 2 2 2 Archaeal ATPase KaiC PF06745.8 gi|344211730|ref|YP_004796050.1| - 0.00011 21.4 0.4 1.2 8.2 0.0 3.8 2 2 2 4 4 4 2 KaiC Parvo_NS1 PF01057.12 gi|344211730|ref|YP_004796050.1| - 0.00014 20.8 0.0 0.29 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|344211730|ref|YP_004796050.1| - 0.00015 20.7 0.0 0.094 11.5 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_11 PF13086.1 gi|344211730|ref|YP_004796050.1| - 0.00025 20.6 0.0 0.23 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|344211730|ref|YP_004796050.1| - 0.00026 20.0 0.0 0.23 10.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) CDC48_2 PF02933.12 gi|344211730|ref|YP_004796050.1| - 0.00045 19.8 0.9 0.0032 17.0 0.6 2.4 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_24 PF13479.1 gi|344211730|ref|YP_004796050.1| - 0.00047 19.8 0.0 0.14 11.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344211730|ref|YP_004796050.1| - 0.0011 18.6 0.5 0.84 9.1 0.1 3.2 2 1 0 2 2 2 1 AAA domain CPT PF07931.7 gi|344211730|ref|YP_004796050.1| - 0.0011 18.6 0.1 0.83 9.2 0.0 3.1 3 0 0 3 3 3 1 Chloramphenicol phosphotransferase-like protein UPF0079 PF02367.12 gi|344211730|ref|YP_004796050.1| - 0.0026 17.3 0.0 2.8 7.6 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|344211730|ref|YP_004796050.1| - 0.009 15.9 0.0 1.5 8.6 0.0 2.5 2 0 0 2 2 2 1 Cytidylate kinase-like family NTPase_1 PF03266.10 gi|344211730|ref|YP_004796050.1| - 0.024 14.3 0.4 17 5.0 0.0 3.6 2 2 2 4 4 4 0 NTPase DEAD PF00270.24 gi|344211730|ref|YP_004796050.1| - 0.048 13.1 1.4 58 3.1 0.0 3.8 3 1 0 4 4 4 0 DEAD/DEAH box helicase ResIII PF04851.10 gi|344211730|ref|YP_004796050.1| - 0.055 13.3 0.0 5.6 6.7 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Torsin PF06309.6 gi|344211730|ref|YP_004796050.1| - 0.093 12.6 0.0 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Torsin Zot PF05707.7 gi|344211730|ref|YP_004796050.1| - 0.12 11.8 0.7 54 3.1 0.0 3.7 3 1 1 4 4 4 0 Zonular occludens toxin (Zot) Viral_helicase1 PF01443.13 gi|344211730|ref|YP_004796050.1| - 0.15 11.5 0.0 1.6 8.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF4349 PF14257.1 gi|344211731|ref|YP_004796051.1| - 6.9e-66 222.1 5.8 6.9e-66 222.1 4.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4349) DivIC PF04977.10 gi|344211731|ref|YP_004796051.1| - 0.00031 20.1 7.1 0.81 9.2 1.2 3.2 2 1 1 3 3 3 3 Septum formation initiator Spc7 PF08317.6 gi|344211731|ref|YP_004796051.1| - 0.0026 16.4 1.8 0.0035 16.0 1.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein IncA PF04156.9 gi|344211731|ref|YP_004796051.1| - 0.0051 16.4 0.9 0.0051 16.4 0.6 1.9 2 0 0 2 2 2 1 IncA protein COG2 PF06148.6 gi|344211731|ref|YP_004796051.1| - 0.015 15.1 0.8 0.024 14.5 0.6 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 CENP-F_leu_zip PF10473.4 gi|344211731|ref|YP_004796051.1| - 0.019 14.8 6.6 0.03 14.2 4.6 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Viral_P18 PF04521.8 gi|344211731|ref|YP_004796051.1| - 0.092 12.1 2.6 0.094 12.1 0.6 1.7 1 1 1 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein APG6 PF04111.7 gi|344211731|ref|YP_004796051.1| - 0.1 11.6 3.8 0.15 11.0 2.6 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 GAS PF13851.1 gi|344211731|ref|YP_004796051.1| - 0.21 10.7 3.4 0.29 10.3 2.4 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TBPIP PF07106.8 gi|344211731|ref|YP_004796051.1| - 0.39 10.2 3.1 0.4 10.1 0.6 1.8 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TMF_TATA_bd PF12325.3 gi|344211731|ref|YP_004796051.1| - 0.45 10.2 8.9 0.19 11.4 1.9 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4140 PF13600.1 gi|344211731|ref|YP_004796051.1| - 1.3 9.5 7.6 8.1 6.9 5.3 2.2 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Spc24 PF08286.6 gi|344211731|ref|YP_004796051.1| - 1.8 8.3 5.8 6.5 6.4 0.6 2.8 2 1 1 3 3 3 0 Spc24 subunit of Ndc80 V_ATPase_I PF01496.14 gi|344211731|ref|YP_004796051.1| - 2.1 6.1 4.1 9.2 3.9 3.1 1.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CN_hydrolase PF00795.17 gi|344211732|ref|YP_004796052.1| - 1.3e-27 96.3 0.0 1.6e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Polyketide_cyc2 PF10604.4 gi|344211733|ref|YP_004796053.1| - 7.2e-13 48.8 1.6 8.4e-13 48.6 1.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|344211733|ref|YP_004796053.1| - 9.4e-07 28.8 0.3 1.1e-06 28.6 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|344211733|ref|YP_004796053.1| - 1.2e-05 25.0 0.0 1.6e-05 24.5 0.0 1.3 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) AHSA1 PF08327.6 gi|344211733|ref|YP_004796053.1| - 0.0028 17.7 1.9 0.026 14.6 1.3 2.1 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein DUF2505 PF10698.4 gi|344211733|ref|YP_004796053.1| - 0.03 13.8 0.2 5.1 6.5 0.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2505) HTH_AsnC-type PF13404.1 gi|344211734|ref|YP_004796054.1| - 0.00023 20.6 0.6 0.0031 17.0 0.4 2.2 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|344211734|ref|YP_004796054.1| - 0.00042 19.6 1.7 0.0019 17.5 0.4 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|344211734|ref|YP_004796054.1| - 0.0053 16.8 0.0 0.0066 16.5 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_20 PF12840.2 gi|344211734|ref|YP_004796054.1| - 0.014 15.2 0.0 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|344211734|ref|YP_004796054.1| - 0.024 14.1 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain MarR_2 PF12802.2 gi|344211734|ref|YP_004796054.1| - 0.034 13.8 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|344211734|ref|YP_004796054.1| - 0.07 13.1 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|344211734|ref|YP_004796054.1| - 0.1 12.0 0.0 0.37 10.2 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 Claudin_2 PF13903.1 gi|344211735|ref|YP_004796055.1| - 0.13 11.9 4.4 0.14 11.8 3.0 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction FtsX PF02687.16 gi|344211735|ref|YP_004796055.1| - 0.37 10.5 2.6 0.48 10.2 1.8 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF3325 PF11804.3 gi|344211735|ref|YP_004796055.1| - 1.2 9.0 6.5 7.4 6.5 4.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) ATP-synt_C PF00137.16 gi|344211735|ref|YP_004796055.1| - 3.3 7.6 10.4 30 4.5 7.0 1.9 1 1 0 1 1 1 0 ATP synthase subunit C TPPK_C PF12555.3 gi|344211735|ref|YP_004796055.1| - 4.5 7.0 8.6 1.8 8.3 2.4 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal Trp_oprn_chp PF09534.5 gi|344211735|ref|YP_004796055.1| - 4.7 6.7 9.0 12 5.4 6.2 1.6 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) LEA_2 PF03168.8 gi|344211736|ref|YP_004796056.1| - 1.5e-17 63.8 0.1 5.5e-08 33.1 0.0 2.4 2 0 0 2 2 2 2 Late embryogenesis abundant protein DUF4307 PF14155.1 gi|344211736|ref|YP_004796056.1| - 0.034 13.9 0.4 0.082 12.7 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) PhoU PF01895.14 gi|344211738|ref|YP_004796058.1| - 1.8e-13 50.7 6.6 5.2e-11 42.8 0.1 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|344211738|ref|YP_004796058.1| - 3.8e-06 26.4 0.0 7.7e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NAD_kinase PF01513.16 gi|344211739|ref|YP_004796059.1| - 2.4e-51 174.2 0.2 3e-51 173.8 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|344211739|ref|YP_004796059.1| - 2.3e-05 23.8 1.4 5.6e-05 22.5 0.1 2.3 3 0 0 3 3 3 1 Diacylglycerol kinase catalytic domain NAD_binding_10 PF13460.1 gi|344211739|ref|YP_004796059.1| - 0.045 13.7 3.5 0.062 13.2 0.4 2.2 2 1 0 2 2 2 0 NADH(P)-binding MoCF_biosynth PF00994.19 gi|344211740|ref|YP_004796060.1| - 1.8e-34 118.1 0.2 2.6e-34 117.6 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain HTH_IclR PF09339.5 gi|344211741|ref|YP_004796061.1| - 0.01 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344211741|ref|YP_004796061.1| - 0.02 14.2 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding BPD_transp_2 PF02653.11 gi|344211742|ref|YP_004796062.1| - 1.1e-38 132.7 42.6 1.1e-38 132.7 29.5 1.6 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|344211743|ref|YP_004796063.1| - 9e-42 142.8 37.1 9e-42 142.8 25.7 2.4 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4271 PF14093.1 gi|344211743|ref|YP_004796063.1| - 0.033 13.8 0.1 0.033 13.8 0.0 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4271) HAMP PF00672.20 gi|344211743|ref|YP_004796063.1| - 0.69 10.1 0.0 0.69 10.1 0.0 3.4 3 0 0 3 3 3 0 HAMP domain ABC_tran PF00005.22 gi|344211744|ref|YP_004796064.1| - 2.7e-29 102.2 0.0 3.5e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211744|ref|YP_004796064.1| - 2.9e-11 43.8 1.2 2.3e-05 24.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|344211744|ref|YP_004796064.1| - 3.1e-07 29.9 0.0 7.1e-07 28.7 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|344211744|ref|YP_004796064.1| - 8.6e-05 21.8 0.6 0.28 10.3 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344211744|ref|YP_004796064.1| - 0.0001 21.7 0.2 0.00018 20.9 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|344211744|ref|YP_004796064.1| - 0.00021 21.7 1.1 0.00032 21.0 0.8 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|344211744|ref|YP_004796064.1| - 0.027 13.9 0.4 1.3 8.4 0.2 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|344211744|ref|YP_004796064.1| - 0.047 13.2 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|344211744|ref|YP_004796064.1| - 0.085 12.8 0.1 0.13 12.2 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|344211744|ref|YP_004796064.1| - 0.23 10.8 1.2 2.8 7.3 0.3 2.4 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|344211745|ref|YP_004796065.1| - 1.2e-30 106.5 0.0 2.2e-30 105.7 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|344211745|ref|YP_004796065.1| - 3.1e-12 47.0 0.1 1.1e-09 38.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344211745|ref|YP_004796065.1| - 5.2e-05 22.5 0.1 0.0018 17.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|344211745|ref|YP_004796065.1| - 0.00027 21.3 0.0 0.00035 20.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344211745|ref|YP_004796065.1| - 0.00042 19.7 0.0 0.00081 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344211745|ref|YP_004796065.1| - 0.0017 18.3 0.0 0.004 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|344211745|ref|YP_004796065.1| - 0.0017 17.8 0.1 0.0082 15.6 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain MutS_V PF00488.16 gi|344211745|ref|YP_004796065.1| - 0.0059 16.0 0.0 0.0096 15.3 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_22 PF13401.1 gi|344211745|ref|YP_004796065.1| - 0.0064 16.6 0.2 0.1 12.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344211745|ref|YP_004796065.1| - 0.0096 15.5 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344211745|ref|YP_004796065.1| - 0.019 14.8 0.0 0.042 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|344211745|ref|YP_004796065.1| - 0.028 13.4 0.0 0.15 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|344211745|ref|YP_004796065.1| - 0.031 13.4 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|344211745|ref|YP_004796065.1| - 0.038 14.8 1.3 0.1 13.4 0.9 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|344211745|ref|YP_004796065.1| - 0.042 12.9 0.0 0.067 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|344211745|ref|YP_004796065.1| - 0.053 13.4 0.0 0.093 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|344211745|ref|YP_004796065.1| - 0.061 12.7 0.0 0.19 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|344211745|ref|YP_004796065.1| - 0.075 12.7 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Guanylate_kin PF00625.16 gi|344211745|ref|YP_004796065.1| - 0.09 12.2 0.0 0.35 10.2 0.0 1.9 2 0 0 2 2 2 0 Guanylate kinase SbcCD_C PF13558.1 gi|344211745|ref|YP_004796065.1| - 0.12 12.2 2.8 3 7.8 1.9 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.17 gi|344211745|ref|YP_004796065.1| - 0.14 10.9 0.1 0.21 10.3 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Peripla_BP_6 PF13458.1 gi|344211746|ref|YP_004796066.1| - 7.8e-28 97.8 14.9 1.2e-22 80.7 2.2 2.1 2 0 0 2 2 2 2 Periplasmic binding protein ANF_receptor PF01094.23 gi|344211746|ref|YP_004796066.1| - 4.3e-19 68.5 2.7 1.8e-15 56.5 0.3 2.2 2 0 0 2 2 2 2 Receptor family ligand binding region Sod_Fe_C PF02777.13 gi|344211747|ref|YP_004796067.1| - 3.7e-37 126.3 0.1 7.1e-37 125.4 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|344211747|ref|YP_004796067.1| - 2.2e-30 104.7 0.6 4.2e-30 103.8 0.4 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain FAD_binding_7 PF03441.9 gi|344211748|ref|YP_004796068.1| - 5.7e-101 337.3 1.4 7.5e-101 336.9 0.9 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|344211748|ref|YP_004796068.1| - 3e-46 157.1 0.0 1.8e-45 154.6 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase Amidohydro_2 PF04909.9 gi|344211748|ref|YP_004796068.1| - 1.2e-05 25.0 0.5 2.6e-05 23.9 0.3 1.6 1 0 0 1 1 1 1 Amidohydrolase ECH PF00378.15 gi|344211749|ref|YP_004796069.1| - 1.2e-51 175.1 0.1 1.4e-51 174.9 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family HTH_Tnp_Tc3_2 PF01498.13 gi|344211750|ref|YP_004796070.1| - 4.5e-05 23.4 0.0 7.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_32 PF13565.1 gi|344211750|ref|YP_004796070.1| - 6.5e-05 23.6 0.0 0.00063 20.4 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|344211750|ref|YP_004796070.1| - 0.0003 20.1 0.0 0.0007 18.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PqqD PF05402.7 gi|344211750|ref|YP_004796070.1| - 0.026 14.5 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_20 PF12840.2 gi|344211750|ref|YP_004796070.1| - 0.031 14.0 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344211750|ref|YP_004796070.1| - 0.039 13.4 0.6 0.069 12.7 0.4 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Arg_repressor PF01316.16 gi|344211750|ref|YP_004796070.1| - 0.085 12.4 0.0 0.23 11.0 0.0 1.7 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain CAMSAP_CKK PF08683.6 gi|344211750|ref|YP_004796070.1| - 0.098 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated UPF0058 PF01893.11 gi|344211751|ref|YP_004796071.1| - 2.4e-34 117.2 0.8 2.7e-34 117.0 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 TPK_catalytic PF04263.11 gi|344211751|ref|YP_004796071.1| - 0.12 11.9 0.3 0.14 11.7 0.2 1.1 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain Chorismate_bind PF00425.13 gi|344211753|ref|YP_004796073.1| - 2.5e-80 269.5 0.0 3.2e-80 269.1 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme TPP_enzyme_N PF02776.13 gi|344211754|ref|YP_004796074.1| - 3.4e-30 104.7 0.0 6.7e-30 103.8 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|344211754|ref|YP_004796074.1| - 1.5e-06 27.8 0.0 2.9e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|344211754|ref|YP_004796074.1| - 0.0014 18.4 0.0 0.0037 17.0 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DnaJ PF00226.26 gi|344211755|ref|YP_004796075.1| - 1.9e-15 56.2 0.1 3.1e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain Strabismus PF06638.6 gi|344211755|ref|YP_004796075.1| - 0.037 12.3 0.0 0.046 12.0 0.0 1.2 1 0 0 1 1 1 0 Strabismus protein DPM3 PF08285.6 gi|344211755|ref|YP_004796075.1| - 0.3 10.9 5.9 7.5 6.4 4.1 2.3 1 1 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) GPDPase_memb PF10110.4 gi|344211756|ref|YP_004796076.1| - 0.016 14.5 1.3 0.021 14.2 0.9 1.2 1 0 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase HemY_N PF07219.8 gi|344211756|ref|YP_004796076.1| - 0.13 11.7 3.5 0.19 11.2 2.4 1.4 1 1 0 1 1 1 0 HemY protein N-terminus ECH PF00378.15 gi|344211757|ref|YP_004796077.1| - 1.2e-49 168.6 0.0 1.5e-39 135.5 0.0 2.0 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase family CAP PF00188.21 gi|344211757|ref|YP_004796077.1| - 0.082 13.4 0.0 11 6.5 0.0 2.6 2 1 1 3 3 3 0 Cysteine-rich secretory protein family MarR PF01047.17 gi|344211758|ref|YP_004796078.1| - 0.00023 20.7 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|344211758|ref|YP_004796078.1| - 0.0003 20.5 0.0 0.00042 20.0 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|344211758|ref|YP_004796078.1| - 0.0035 17.6 0.0 0.0059 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF3504 PF12012.3 gi|344211758|ref|YP_004796078.1| - 0.02 14.6 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3504) MarR_2 PF12802.2 gi|344211758|ref|YP_004796078.1| - 0.034 13.8 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|344211758|ref|YP_004796078.1| - 0.056 13.1 0.0 0.07 12.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB NRDE PF05742.7 gi|344211759|ref|YP_004796079.1| - 2.6e-25 89.2 0.0 1.2e-23 83.8 0.0 2.0 1 1 0 1 1 1 1 NRDE protein AAT PF03417.11 gi|344211759|ref|YP_004796079.1| - 0.012 15.0 0.0 0.016 14.6 0.0 1.1 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase AMP-binding PF00501.23 gi|344211760|ref|YP_004796080.1| - 2.6e-76 256.7 2.8 3e-76 256.4 2.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344211760|ref|YP_004796080.1| - 1.5e-17 64.3 2.5 3.7e-17 63.0 1.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MR_MLE PF01188.16 gi|344211761|ref|YP_004796081.1| - 4.2e-18 65.6 1.7 1.4e-17 63.9 0.4 2.4 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|344211761|ref|YP_004796081.1| - 1.2e-12 47.8 0.8 3.5e-12 46.2 0.5 1.9 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|344211761|ref|YP_004796081.1| - 8e-05 22.6 0.7 0.0018 18.2 0.2 2.8 2 1 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.13 gi|344211762|ref|YP_004796082.1| - 1.6e-36 125.8 20.2 1.9e-36 125.5 14.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family AMP-binding PF00501.23 gi|344211763|ref|YP_004796083.1| - 3.2e-86 289.3 0.4 3.9e-86 289.0 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344211763|ref|YP_004796083.1| - 1.5e-17 64.3 0.1 9.9e-17 61.6 0.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain PAS_9 PF13426.1 gi|344211764|ref|YP_004796084.1| - 1.1e-46 157.4 0.3 1.4e-28 99.3 0.1 3.0 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|344211764|ref|YP_004796084.1| - 8.6e-22 76.9 0.3 5.1e-21 74.4 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344211764|ref|YP_004796084.1| - 2e-21 76.1 5.8 4.7e-11 42.7 0.1 3.5 3 1 1 4 4 4 2 PAS fold PAS PF00989.19 gi|344211764|ref|YP_004796084.1| - 3e-20 72.1 0.1 2.8e-10 39.9 0.0 2.9 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|344211764|ref|YP_004796084.1| - 2.7e-19 69.2 0.5 1.6e-18 66.7 0.0 2.5 3 0 0 3 3 3 1 Response regulator receiver domain PAS_3 PF08447.6 gi|344211764|ref|YP_004796084.1| - 1.7e-18 66.5 0.2 7.1e-11 42.0 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|344211764|ref|YP_004796084.1| - 1.6e-14 53.1 0.1 2.3e-06 27.2 0.0 3.4 3 0 0 3 3 3 2 PAS domain GAF_3 PF13492.1 gi|344211764|ref|YP_004796084.1| - 1e-12 48.2 0.1 5.2e-12 45.9 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|344211764|ref|YP_004796084.1| - 6.2e-11 42.9 1.6 1.4e-10 41.8 0.4 2.2 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|344211764|ref|YP_004796084.1| - 1.7e-10 40.7 1.1 1.7e-10 40.7 0.8 2.5 2 1 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|344211764|ref|YP_004796084.1| - 9.1e-06 25.6 3.9 0.0024 17.8 0.0 4.2 4 1 0 4 4 4 1 PAS fold GAF PF01590.21 gi|344211764|ref|YP_004796084.1| - 0.00043 20.4 0.1 0.041 14.0 0.0 3.1 3 1 0 3 3 3 1 GAF domain HATPase_c_3 PF13589.1 gi|344211764|ref|YP_004796084.1| - 0.00068 19.3 0.0 0.0031 17.1 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ndr PF03096.9 gi|344211764|ref|YP_004796084.1| - 0.12 10.8 0.1 0.21 10.0 0.1 1.3 1 0 0 1 1 1 0 Ndr family CDC45 PF02724.9 gi|344211765|ref|YP_004796085.1| - 0.025 12.6 0.3 0.029 12.4 0.2 1.1 1 0 0 1 1 1 0 CDC45-like protein DUF2576 PF10845.3 gi|344211765|ref|YP_004796085.1| - 0.11 11.6 0.5 0.19 10.9 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) Cwf_Cwc_15 PF04889.7 gi|344211765|ref|YP_004796085.1| - 0.5 10.0 16.2 0.16 11.6 6.4 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein Pex19 PF04614.7 gi|344211765|ref|YP_004796085.1| - 1.8 8.1 7.0 0.36 10.4 2.6 1.5 2 0 0 2 2 2 0 Pex19 protein family Takusan PF04822.8 gi|344211765|ref|YP_004796085.1| - 4.8 7.0 7.1 0.15 11.8 0.5 1.8 2 0 0 2 2 2 0 Takusan DUF318 PF03773.8 gi|344211766|ref|YP_004796086.1| - 0.025 13.5 2.0 0.029 13.3 1.4 1.0 1 0 0 1 1 1 0 Predicted permease DUF1980 PF09323.5 gi|344211766|ref|YP_004796086.1| - 0.43 10.2 1.8 1.1 8.9 0.7 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) DUF805 PF05656.9 gi|344211766|ref|YP_004796086.1| - 2 8.2 4.6 2.5 7.9 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) CARDB PF07705.6 gi|344211767|ref|YP_004796087.1| - 0.0025 17.8 0.9 0.029 14.4 0.0 2.3 2 0 0 2 2 2 1 CARDB Glyco_hydro_2 PF00703.16 gi|344211767|ref|YP_004796087.1| - 0.0028 18.1 0.4 0.39 11.1 0.1 2.6 2 1 0 2 2 2 1 Glycosyl hydrolases family 2 Transglut_C PF00927.17 gi|344211767|ref|YP_004796087.1| - 0.0083 16.1 0.0 0.7 9.9 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase family, C-terminal ig like domain Gram_pos_anchor PF00746.16 gi|344211767|ref|YP_004796087.1| - 0.2 11.4 0.6 0.41 10.4 0.4 1.5 1 0 0 1 1 1 0 Gram positive anchor DUF2797 PF10977.3 gi|344211768|ref|YP_004796088.1| - 5.5e-43 147.2 1.1 1.4e-41 142.7 0.7 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) PBP PF01161.15 gi|344211769|ref|YP_004796089.1| - 1.4e-32 112.5 0.1 2e-32 112.0 0.1 1.2 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Epimerase PF01370.16 gi|344211770|ref|YP_004796090.1| - 2.8e-48 164.3 0.0 3.3e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|344211770|ref|YP_004796090.1| - 7.2e-22 77.6 0.0 9e-22 77.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|344211770|ref|YP_004796090.1| - 1.8e-19 69.7 0.0 8.2e-19 67.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|344211770|ref|YP_004796090.1| - 9e-18 63.9 0.0 1.1e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|344211770|ref|YP_004796090.1| - 2.9e-15 56.7 0.0 3.9e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|344211770|ref|YP_004796090.1| - 1e-13 50.8 0.1 3.6e-11 42.4 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein TrkA_N PF02254.13 gi|344211770|ref|YP_004796090.1| - 1.6e-07 31.3 0.3 3.7e-07 30.1 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|344211770|ref|YP_004796090.1| - 1.1e-05 25.4 0.8 2.5e-05 24.2 0.5 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Ldh_1_N PF00056.18 gi|344211770|ref|YP_004796090.1| - 0.00039 20.2 0.1 0.00059 19.6 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.8 gi|344211770|ref|YP_004796090.1| - 0.00043 19.5 0.0 0.0014 17.9 0.0 1.7 2 0 0 2 2 2 1 NmrA-like family DapB_N PF01113.15 gi|344211770|ref|YP_004796090.1| - 0.13 12.1 0.1 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|344211770|ref|YP_004796090.1| - 0.16 10.9 0.6 0.25 10.3 0.4 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Thioredoxin_4 PF13462.1 gi|344211771|ref|YP_004796091.1| - 4.8e-31 107.9 0.0 6.2e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|344211771|ref|YP_004796091.1| - 1e-11 44.7 1.2 2e-09 37.2 0.8 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|344211771|ref|YP_004796091.1| - 0.00012 22.2 0.0 0.00028 21.0 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like domain Trm56 PF01994.11 gi|344211772|ref|YP_004796092.1| - 3.5e-47 159.1 0.0 4.6e-47 158.7 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Sulfatase PF00884.18 gi|344211773|ref|YP_004796093.1| - 8.6e-36 123.6 0.1 1.2e-35 123.2 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|344211773|ref|YP_004796093.1| - 6.8e-13 48.6 0.9 7e-10 38.7 0.6 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|344211773|ref|YP_004796093.1| - 1.9e-05 23.2 0.0 0.00062 18.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|344211773|ref|YP_004796093.1| - 0.0008 18.3 0.1 0.0014 17.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DHFR_1 PF00186.14 gi|344211774|ref|YP_004796094.1| - 2.7e-34 118.0 0.0 7.6e-34 116.6 0.0 1.6 1 1 0 1 1 1 1 Dihydrofolate reductase Sortase PF04203.8 gi|344211774|ref|YP_004796094.1| - 0.12 11.9 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Sortase family C1_4 PF07975.7 gi|344211775|ref|YP_004796095.1| - 0.035 14.0 0.2 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 TFIIH C1-like domain zf-H2C2_2 PF13465.1 gi|344211775|ref|YP_004796095.1| - 0.056 13.7 1.6 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.2 gi|344211775|ref|YP_004796095.1| - 0.11 12.3 1.7 0.16 11.8 1.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|344211775|ref|YP_004796095.1| - 0.12 12.3 3.4 0.66 9.9 2.3 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_6 PF13912.1 gi|344211775|ref|YP_004796095.1| - 0.18 11.7 2.2 0.41 10.6 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|344211775|ref|YP_004796095.1| - 0.39 10.0 2.9 0.76 9.1 2.0 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|344211775|ref|YP_004796095.1| - 0.74 9.8 5.1 0.35 10.9 0.4 2.2 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|344211775|ref|YP_004796095.1| - 2.1 7.9 5.2 71 3.1 3.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344211775|ref|YP_004796095.1| - 2.7 7.7 5.2 97 2.7 3.6 2.4 1 1 0 1 1 1 0 zinc-ribbon domain TFIIE_alpha PF02002.12 gi|344211776|ref|YP_004796096.1| - 6.5e-21 73.8 0.9 1.3e-20 72.8 0.1 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|344211776|ref|YP_004796096.1| - 0.0021 17.9 0.4 0.0067 16.2 0.0 2.0 2 0 0 2 2 2 1 Sigma-70 region 3 Desulfoferrod_N PF06397.7 gi|344211776|ref|YP_004796096.1| - 0.0023 17.2 0.9 1.6 8.1 0.1 2.3 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain zinc_ribbon_2 PF13240.1 gi|344211776|ref|YP_004796096.1| - 0.0085 15.5 2.7 0.22 11.0 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.14 gi|344211776|ref|YP_004796096.1| - 0.0089 15.7 0.5 0.014 15.1 0.4 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|344211776|ref|YP_004796096.1| - 0.013 15.3 0.6 0.022 14.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_6 PF13912.1 gi|344211776|ref|YP_004796096.1| - 0.018 14.9 1.3 0.89 9.5 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|344211776|ref|YP_004796096.1| - 0.028 13.7 2.8 3.1 7.2 0.1 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|344211776|ref|YP_004796096.1| - 0.038 13.9 3.8 0.27 11.2 2.7 2.1 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|344211776|ref|YP_004796096.1| - 0.07 12.9 1.7 8 6.3 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|344211776|ref|YP_004796096.1| - 0.073 12.8 2.7 1.4 8.7 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-HYPF PF07503.7 gi|344211776|ref|YP_004796096.1| - 0.078 12.4 0.3 5.9 6.4 0.0 2.5 2 0 0 2 2 2 0 HypF finger zinc-ribbons_6 PF07191.7 gi|344211776|ref|YP_004796096.1| - 0.12 12.2 0.5 0.33 10.7 0.4 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.1 gi|344211776|ref|YP_004796096.1| - 0.21 11.9 1.8 12 6.4 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|344211776|ref|YP_004796096.1| - 0.25 10.5 2.1 2.1 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|344211776|ref|YP_004796096.1| - 0.26 11.0 4.1 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|344211776|ref|YP_004796096.1| - 0.31 10.7 1.5 2.8 7.6 0.6 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|344211776|ref|YP_004796096.1| - 0.41 10.3 2.9 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-Mss51 PF13824.1 gi|344211776|ref|YP_004796096.1| - 2.3 8.1 4.2 7.3 6.5 1.9 2.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Nudix_N_2 PF14803.1 gi|344211776|ref|YP_004796096.1| - 3 7.6 4.9 5.4 6.8 0.2 2.6 3 0 0 3 3 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|344211776|ref|YP_004796096.1| - 9.3 6.4 7.8 18 5.5 2.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2110 PF09883.4 gi|344211777|ref|YP_004796097.1| - 1.9e-91 305.7 0.0 2.2e-91 305.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) LPAM_1 PF08139.7 gi|344211778|ref|YP_004796098.1| - 0.032 14.4 1.0 0.062 13.5 0.7 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Nop PF01798.13 gi|344211779|ref|YP_004796099.1| - 2.3e-40 137.3 0.1 3.5e-40 136.7 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain Fibrillarin PF01269.12 gi|344211780|ref|YP_004796100.1| - 3.5e-58 196.2 0.0 4.1e-58 196.0 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCS2 PF04107.8 gi|344211781|ref|YP_004796101.1| - 5.5e-77 258.7 0.1 6.6e-77 258.4 0.0 1.1 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|344211781|ref|YP_004796101.1| - 0.0042 16.7 0.2 0.071 12.7 0.1 2.2 1 1 0 1 1 1 1 Putative amidoligase enzyme GCS PF03074.11 gi|344211781|ref|YP_004796101.1| - 0.038 13.0 0.0 0.062 12.3 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase TrmB PF01978.14 gi|344211782|ref|YP_004796102.1| - 1.2e-08 34.5 0.1 1.9e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|344211782|ref|YP_004796102.1| - 2.4e-06 26.7 0.0 3.5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|344211782|ref|YP_004796102.1| - 3.8e-06 26.6 0.3 7e-06 25.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|344211782|ref|YP_004796102.1| - 7.8e-05 22.0 0.2 0.00019 20.7 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|344211782|ref|YP_004796102.1| - 8.3e-05 22.1 0.2 0.00013 21.4 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|344211782|ref|YP_004796102.1| - 9e-05 21.9 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.17 gi|344211782|ref|YP_004796102.1| - 0.00066 19.3 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344211782|ref|YP_004796102.1| - 0.00077 19.0 0.0 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344211782|ref|YP_004796102.1| - 0.0013 18.3 0.1 0.0024 17.4 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|344211782|ref|YP_004796102.1| - 0.0043 17.3 0.1 0.0086 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|344211782|ref|YP_004796102.1| - 0.0048 16.9 0.0 0.0081 16.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.6 gi|344211782|ref|YP_004796102.1| - 0.0073 16.1 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r3 PF04539.11 gi|344211782|ref|YP_004796102.1| - 0.36 10.7 0.1 0.36 10.7 0.0 2.4 3 0 0 3 3 3 0 Sigma-70 region 3 CTP_transf_2 PF01467.21 gi|344211783|ref|YP_004796103.1| - 1.1e-12 48.3 0.2 4.7e-11 42.9 0.1 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|344211783|ref|YP_004796103.1| - 0.0034 17.0 0.2 0.021 14.4 0.1 2.0 2 0 0 2 2 2 1 FAD synthetase TFIIB PF00382.14 gi|344211784|ref|YP_004796104.1| - 5.4e-07 29.3 0.3 9e-07 28.6 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIB repeat HTH_28 PF13518.1 gi|344211784|ref|YP_004796104.1| - 4.7e-05 23.2 0.0 7.7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|344211784|ref|YP_004796104.1| - 0.00099 18.6 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|344211784|ref|YP_004796104.1| - 0.0032 16.9 0.4 0.0052 16.2 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344211784|ref|YP_004796104.1| - 0.014 14.6 0.1 0.023 14.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_43 PF09904.4 gi|344211784|ref|YP_004796104.1| - 0.023 14.4 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix CFTR_R PF14396.1 gi|344211784|ref|YP_004796104.1| - 0.056 12.8 0.0 0.06 12.7 0.0 1.1 1 0 0 1 1 1 0 Cystic fibrosis TM conductance regulator (CFTR), regulator domain HTH_Tnp_ISL3 PF13542.1 gi|344211784|ref|YP_004796104.1| - 0.086 12.0 0.2 0.14 11.3 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|344211784|ref|YP_004796104.1| - 0.1 12.7 0.2 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.1 gi|344211784|ref|YP_004796104.1| - 0.12 11.7 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.1 gi|344211784|ref|YP_004796104.1| - 0.13 11.8 0.1 0.32 10.6 0.0 1.7 2 1 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_31 PF13560.1 gi|344211786|ref|YP_004796106.1| - 0.0002 21.4 0.2 0.00055 20.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|344211786|ref|YP_004796106.1| - 0.00042 20.3 0.0 0.00094 19.1 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|344211786|ref|YP_004796106.1| - 0.014 15.2 0.1 0.022 14.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix DUF4048 PF13257.1 gi|344211786|ref|YP_004796106.1| - 0.02 14.5 1.2 0.026 14.1 0.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4048) Acyl-CoA_dh_1 PF00441.19 gi|344211787|ref|YP_004796107.1| - 2.6e-58 196.3 4.1 4.1e-58 195.7 2.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|344211787|ref|YP_004796107.1| - 5e-29 101.2 5.5 1e-28 100.2 3.8 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344211787|ref|YP_004796107.1| - 2e-28 99.1 1.1 6.4e-28 97.5 0.0 2.3 2 1 1 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344211787|ref|YP_004796107.1| - 2.5e-21 74.9 0.0 6.2e-21 73.6 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|344211787|ref|YP_004796107.1| - 0.018 14.4 0.1 0.22 10.8 0.0 2.1 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.1 gi|344211788|ref|YP_004796108.1| - 5.9e-16 59.1 0.1 5e-14 52.9 0.1 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344211788|ref|YP_004796108.1| - 3e-09 37.6 0.3 1.3e-07 32.2 0.0 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344211788|ref|YP_004796108.1| - 1.5e-07 31.0 0.2 4.3e-07 29.5 0.1 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|344211788|ref|YP_004796108.1| - 0.00041 20.5 0.0 0.00063 19.9 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RseC_MucC PF04246.7 gi|344211789|ref|YP_004796109.1| - 0.49 9.9 3.5 0.54 9.8 2.4 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Syndecan PF01034.15 gi|344211789|ref|YP_004796109.1| - 1.1 8.9 4.1 0.39 10.3 1.1 1.6 1 1 1 2 2 2 0 Syndecan domain Pantoate_transf PF02548.10 gi|344211790|ref|YP_004796110.1| - 1.2e-99 332.7 0.2 1.3e-99 332.5 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|344211790|ref|YP_004796110.1| - 7.5e-09 35.1 3.5 5.3e-08 32.3 0.7 2.2 1 1 0 2 2 2 2 Phosphoenolpyruvate phosphomutase DUF2249 PF10006.4 gi|344211790|ref|YP_004796110.1| - 0.13 11.8 0.1 0.33 10.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) COX2 PF00116.15 gi|344211791|ref|YP_004796111.1| - 4.1e-19 68.5 0.7 3.3e-18 65.6 0.5 2.0 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|344211791|ref|YP_004796111.1| - 6.3e-06 26.0 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Cupredoxin-like domain COX2_TM PF02790.10 gi|344211791|ref|YP_004796111.1| - 4e-05 23.4 0.0 6.5e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF3377 PF11857.3 gi|344211791|ref|YP_004796111.1| - 0.073 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) COX1 PF00115.15 gi|344211792|ref|YP_004796112.1| - 1.8e-141 471.8 53.7 4.6e-141 470.4 37.2 1.7 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF4383 PF14325.1 gi|344211793|ref|YP_004796113.1| - 0.059 13.3 1.8 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4383) COX3 PF00510.13 gi|344211794|ref|YP_004796114.1| - 6.1e-39 134.0 6.4 1.1e-38 133.2 4.4 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III BATS PF06968.8 gi|344211795|ref|YP_004796115.1| - 3.4e-23 81.2 0.0 1.3e-22 79.4 0.0 1.9 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|344211795|ref|YP_004796115.1| - 4e-14 53.1 0.6 6.7e-13 49.1 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily GGDN PF05165.7 gi|344211795|ref|YP_004796115.1| - 0.034 13.1 0.0 0.81 8.6 0.0 2.2 2 0 0 2 2 2 0 GGDN family ELFV_dehydrog PF00208.16 gi|344211796|ref|YP_004796116.1| - 0.0014 18.2 0.0 0.0036 16.9 0.0 1.7 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.17 gi|344211796|ref|YP_004796116.1| - 0.0032 17.9 2.3 0.4 11.2 0.1 2.9 3 0 0 3 3 3 2 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|344211796|ref|YP_004796116.1| - 0.019 13.9 0.3 0.41 9.5 0.0 2.2 2 0 0 2 2 2 0 Saccharopine dehydrogenase Pup PF05639.6 gi|344211796|ref|YP_004796116.1| - 0.65 10.5 3.7 2.3 8.7 0.9 2.7 2 0 0 2 2 2 0 Pup-like protein Aminotran_1_2 PF00155.16 gi|344211797|ref|YP_004796117.1| - 1.1e-57 195.6 0.0 1.3e-57 195.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|344211797|ref|YP_004796117.1| - 0.0015 17.6 0.2 0.0036 16.4 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|344211797|ref|YP_004796117.1| - 0.0017 16.6 0.0 0.003 15.8 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AAA_26 PF13500.1 gi|344211798|ref|YP_004796118.1| - 1.4e-38 132.4 0.0 1.7e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|344211798|ref|YP_004796118.1| - 5.4e-06 25.9 1.2 4.2e-05 23.0 0.8 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|344211798|ref|YP_004796118.1| - 0.00011 20.9 1.6 0.00051 18.7 0.4 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF1611) DRTGG PF07085.7 gi|344211799|ref|YP_004796119.1| - 2.3e-30 104.2 0.2 1.2e-29 101.9 0.0 2.1 2 0 0 2 2 2 1 DRTGG domain AAA_26 PF13500.1 gi|344211799|ref|YP_004796119.1| - 1.1e-29 103.4 0.0 8.2e-29 100.6 0.0 2.4 2 1 2 4 4 4 1 AAA domain IstB_IS21 PF01695.12 gi|344211799|ref|YP_004796119.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein CbiA PF01656.18 gi|344211799|ref|YP_004796119.1| - 0.02 14.2 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.11 gi|344211799|ref|YP_004796119.1| - 0.024 14.3 0.0 0.061 13.0 0.0 1.6 2 0 0 2 2 2 0 HPr Serine kinase N terminus ATP-grasp_5 PF13549.1 gi|344211800|ref|YP_004796120.1| - 1.8e-71 239.8 0.3 3.2e-71 239.0 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|344211800|ref|YP_004796120.1| - 3.1e-51 172.5 0.2 7.5e-51 171.3 0.2 1.7 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|344211800|ref|YP_004796120.1| - 4.9e-23 81.5 1.5 1e-22 80.4 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|344211800|ref|YP_004796120.1| - 2.9e-14 53.3 1.9 9.1e-14 51.7 1.3 2.0 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|344211800|ref|YP_004796120.1| - 0.00013 21.3 0.0 0.00033 20.0 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|344211800|ref|YP_004796120.1| - 0.0017 18.8 0.4 0.032 14.7 0.1 2.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold DUF1025 PF06262.6 gi|344211801|ref|YP_004796121.1| - 0.021 14.5 0.0 0.053 13.3 0.0 1.6 1 1 0 1 1 1 0 Possibl zinc metallo-peptidase Zea_mays_MuDR PF05928.6 gi|344211801|ref|YP_004796121.1| - 0.085 12.2 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) Ferritin PF00210.19 gi|344211802|ref|YP_004796122.1| - 6.5e-29 100.5 4.4 7.7e-29 100.2 3.1 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|344211802|ref|YP_004796122.1| - 0.00031 20.9 1.6 0.019 15.1 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF2383) DUF1451 PF07295.6 gi|344211802|ref|YP_004796122.1| - 0.33 10.7 3.8 5.2 6.8 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) TPR_9 PF13371.1 gi|344211804|ref|YP_004796124.1| - 0.0092 15.8 1.5 0.022 14.6 1.0 1.6 1 1 0 1 1 1 1 Tetratricopeptide repeat DUF4164 PF13747.1 gi|344211804|ref|YP_004796124.1| - 0.037 14.1 4.4 1 9.5 1.7 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) CAMP_factor PF07373.6 gi|344211804|ref|YP_004796124.1| - 0.044 13.2 0.2 0.15 11.5 0.1 2.0 2 1 0 2 2 2 0 CAMP factor (Cfa) HsbA PF12296.3 gi|344211804|ref|YP_004796124.1| - 0.046 13.5 0.4 0.31 10.9 0.1 2.1 2 0 0 2 2 2 0 Hydrophobic surface binding protein A MDMPI_N PF11716.3 gi|344211804|ref|YP_004796124.1| - 0.051 13.9 3.5 0.065 13.6 1.4 1.8 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain TPR_14 PF13428.1 gi|344211804|ref|YP_004796124.1| - 0.088 13.4 1.2 5.7 7.8 0.2 2.7 2 1 0 2 2 2 0 Tetratricopeptide repeat CorA PF01544.13 gi|344211804|ref|YP_004796124.1| - 0.094 11.7 1.2 0.098 11.6 0.2 1.5 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF948 PF06103.6 gi|344211804|ref|YP_004796124.1| - 0.2 11.5 1.2 1.3 8.9 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) PilJ PF13675.1 gi|344211804|ref|YP_004796124.1| - 0.23 11.7 4.4 0.57 10.5 1.8 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF35 PF01796.12 gi|344211807|ref|YP_004796127.1| - 4.2e-07 30.0 0.9 6.4e-07 29.5 0.6 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|344211808|ref|YP_004796128.1| - 1.1e-08 34.5 0.4 3.2e-08 33.0 0.2 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.17 gi|344211808|ref|YP_004796128.1| - 0.0021 17.8 0.3 6.6 6.6 0.0 3.5 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain Thiolase_N PF00108.18 gi|344211808|ref|YP_004796128.1| - 0.0037 16.3 0.0 0.0081 15.1 0.0 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain UpxZ PF06603.6 gi|344211809|ref|YP_004796129.1| - 0.081 12.9 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 UpxZ family of transcription anti-terminator antagonists Peripla_BP_2 PF01497.13 gi|344211810|ref|YP_004796130.1| - 1.1e-17 63.9 0.0 1.7e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TF_Zn_Ribbon PF08271.7 gi|344211811|ref|YP_004796131.1| - 0.0058 15.9 0.2 0.0098 15.1 0.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Stc1 PF12898.2 gi|344211811|ref|YP_004796131.1| - 0.0091 16.0 0.2 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Stc1 domain zinc_ribbon_4 PF13717.1 gi|344211811|ref|YP_004796131.1| - 0.02 14.5 0.3 2.2 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344211811|ref|YP_004796131.1| - 0.043 13.3 1.7 2.3 7.8 0.2 2.2 1 1 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344211811|ref|YP_004796131.1| - 0.079 12.7 1.3 0.39 10.5 0.9 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TusA PF01206.12 gi|344211811|ref|YP_004796131.1| - 0.088 12.4 0.1 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Sulfurtransferase TusA zf-Mss51 PF13824.1 gi|344211811|ref|YP_004796131.1| - 0.095 12.5 1.8 0.3 10.9 1.2 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 PhnA_Zn_Ribbon PF08274.7 gi|344211811|ref|YP_004796131.1| - 0.11 12.3 3.5 0.47 10.2 0.1 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Elf1 PF05129.8 gi|344211811|ref|YP_004796131.1| - 0.12 12.1 0.6 0.92 9.2 0.0 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like HrpB4 PF09502.5 gi|344211811|ref|YP_004796131.1| - 0.12 11.5 0.2 0.13 11.3 0.1 1.0 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB4) DZR PF12773.2 gi|344211811|ref|YP_004796131.1| - 0.16 11.8 1.4 0.33 10.7 0.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|344211811|ref|YP_004796131.1| - 0.17 11.7 1.2 0.34 10.7 0.8 1.5 1 1 0 1 1 1 0 zinc-ribbons zf-H2C2_2 PF13465.1 gi|344211811|ref|YP_004796131.1| - 0.19 12.0 0.6 9.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-trcl PF13451.1 gi|344211811|ref|YP_004796131.1| - 0.21 11.2 1.2 0.93 9.1 0.2 2.1 2 0 0 2 2 2 0 Probable zinc-binding domain Lar_restr_allev PF14354.1 gi|344211811|ref|YP_004796131.1| - 0.23 11.7 1.8 0.35 11.1 1.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar ADK_lid PF05191.9 gi|344211811|ref|YP_004796131.1| - 0.24 11.1 1.9 0.47 10.1 1.3 1.5 1 1 0 1 1 1 0 Adenylate kinase, active site lid Rubredoxin PF00301.15 gi|344211811|ref|YP_004796131.1| - 0.44 10.4 4.1 2.5 8.0 2.8 1.9 1 1 0 1 1 1 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|344211811|ref|YP_004796131.1| - 0.78 9.7 4.9 6.2 6.8 0.3 2.5 1 1 2 3 3 3 0 Zinc ribbon domain UPF0547 PF10571.4 gi|344211811|ref|YP_004796131.1| - 1.4 8.6 3.8 5.2 6.8 2.7 1.8 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 OAD_gamma PF04277.8 gi|344211812|ref|YP_004796132.1| - 0.061 13.6 1.1 0.12 12.7 0.8 1.5 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain Carboxyl_trans PF01039.17 gi|344211813|ref|YP_004796133.1| - 1.6e-198 660.0 0.0 1.8e-198 659.8 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|344211813|ref|YP_004796133.1| - 0.00087 18.5 0.0 0.0021 17.2 0.0 1.6 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) adh_short PF00106.20 gi|344211814|ref|YP_004796134.1| - 1.9e-41 141.7 1.0 2.5e-41 141.3 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344211814|ref|YP_004796134.1| - 3e-22 79.5 0.0 3.5e-22 79.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344211814|ref|YP_004796134.1| - 2.5e-21 76.1 0.3 3.7e-21 75.6 0.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344211814|ref|YP_004796134.1| - 0.023 14.1 0.3 0.034 13.5 0.2 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family HAD PF12710.2 gi|344211814|ref|YP_004796134.1| - 0.086 13.0 0.1 0.46 10.6 0.1 1.9 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase RGP PF03214.8 gi|344211815|ref|YP_004796135.1| - 6.6e-17 61.2 0.0 8.3e-17 60.9 0.0 1.1 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_8 PF13416.1 gi|344211816|ref|YP_004796136.1| - 2.6e-15 56.9 0.2 3.7e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|344211816|ref|YP_004796136.1| - 6.3e-15 55.1 0.0 8.3e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344211816|ref|YP_004796136.1| - 7.6e-06 25.8 0.0 3.4e-05 23.7 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|344211816|ref|YP_004796136.1| - 8.9e-06 25.4 0.4 4.6e-05 23.1 0.3 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|344211817|ref|YP_004796137.1| - 1.3e-24 86.7 34.0 1.7e-14 53.7 9.5 3.7 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|344211818|ref|YP_004796138.1| - 3.1e-35 121.4 0.0 5.5e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|344211818|ref|YP_004796138.1| - 2.5e-09 37.0 0.1 1e-08 35.0 0.1 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|344211818|ref|YP_004796138.1| - 4.7e-07 30.0 0.0 0.0024 17.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344211818|ref|YP_004796138.1| - 0.00017 21.6 0.1 0.00032 20.7 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.10 gi|344211818|ref|YP_004796138.1| - 0.0014 17.3 0.0 0.0021 16.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|344211818|ref|YP_004796138.1| - 0.0028 17.8 0.1 0.029 14.5 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|344211818|ref|YP_004796138.1| - 0.0031 17.6 0.6 0.016 15.3 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344211818|ref|YP_004796138.1| - 0.0076 16.1 0.6 0.14 12.0 0.4 2.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344211818|ref|YP_004796138.1| - 0.0086 15.9 0.2 0.086 12.7 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|344211818|ref|YP_004796138.1| - 0.015 14.4 0.0 0.028 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|344211818|ref|YP_004796138.1| - 0.016 15.1 0.0 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|344211818|ref|YP_004796138.1| - 0.019 14.0 0.0 0.093 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|344211818|ref|YP_004796138.1| - 0.086 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|344211818|ref|YP_004796138.1| - 0.1 11.4 0.2 0.18 10.6 0.1 1.4 1 1 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|344211818|ref|YP_004796138.1| - 0.12 11.7 0.0 0.3 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|344211818|ref|YP_004796138.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PMT_2 PF13231.1 gi|344211819|ref|YP_004796139.1| - 5.4e-10 39.4 9.4 5.4e-10 39.4 6.5 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|344211819|ref|YP_004796139.1| - 0.13 11.6 12.9 0.03 13.6 5.4 2.1 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Gluconate_2-dh3 PF13618.1 gi|344211820|ref|YP_004796140.1| - 5.3e-15 55.7 0.0 8.4e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|344211820|ref|YP_004796140.1| - 0.001 18.8 4.9 0.001 18.8 3.4 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF4235 PF14019.1 gi|344211820|ref|YP_004796140.1| - 5 7.0 7.3 13 5.6 5.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4235) Glycos_transf_2 PF00535.21 gi|344211821|ref|YP_004796141.1| - 9.6e-23 80.7 0.0 1.2e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211821|ref|YP_004796141.1| - 1.8e-07 31.1 0.1 2.3e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF1724 PF08350.5 gi|344211822|ref|YP_004796142.1| - 6.8e-14 51.1 0.0 1.2e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) TrmB PF01978.14 gi|344211822|ref|YP_004796142.1| - 0.0041 16.7 0.0 0.0085 15.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344211822|ref|YP_004796142.1| - 0.021 14.4 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|344211822|ref|YP_004796142.1| - 0.028 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Ribosomal_S19e PF01090.14 gi|344211822|ref|YP_004796142.1| - 0.029 13.8 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e DUF505 PF04458.7 gi|344211822|ref|YP_004796142.1| - 0.086 10.9 0.0 0.12 10.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HemN_C PF06969.11 gi|344211822|ref|YP_004796142.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain Regulator_TrmB PF11495.3 gi|344211823|ref|YP_004796143.1| - 4.1e-70 235.3 0.4 5.4e-70 235.0 0.1 1.3 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|344211823|ref|YP_004796143.1| - 2.1e-20 72.1 0.0 4.5e-20 71.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|344211823|ref|YP_004796143.1| - 1.5e-05 24.7 0.0 3.2e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344211823|ref|YP_004796143.1| - 0.0002 20.9 0.1 0.0013 18.3 0.0 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|344211823|ref|YP_004796143.1| - 0.0007 19.1 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|344211823|ref|YP_004796143.1| - 0.0012 18.4 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.4 gi|344211823|ref|YP_004796143.1| - 0.0049 16.7 0.0 0.009 15.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|344211823|ref|YP_004796143.1| - 0.0072 16.4 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|344211823|ref|YP_004796143.1| - 0.025 13.9 0.0 0.082 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|344211823|ref|YP_004796143.1| - 0.041 13.3 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_9 PF08221.6 gi|344211823|ref|YP_004796143.1| - 0.082 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|344211823|ref|YP_004796143.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) SBP_bac_8 PF13416.1 gi|344211824|ref|YP_004796144.1| - 3.3e-21 76.2 9.2 5.3e-21 75.5 6.4 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344211824|ref|YP_004796144.1| - 4.9e-16 59.3 7.6 6.9e-16 58.8 5.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344211824|ref|YP_004796144.1| - 0.0062 16.4 6.1 0.017 15.0 4.2 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ADH_N PF08240.7 gi|344211825|ref|YP_004796145.1| - 2.6e-10 40.0 0.0 3.8e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|344211825|ref|YP_004796145.1| - 0.076 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase GFO_IDH_MocA PF01408.17 gi|344211826|ref|YP_004796146.1| - 1.7e-27 96.2 0.7 3.4e-27 95.3 0.2 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|344211826|ref|YP_004796146.1| - 1.1e-07 31.6 0.1 2.4e-07 30.5 0.1 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|344211826|ref|YP_004796146.1| - 0.00016 22.0 0.1 0.00035 20.9 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|344211826|ref|YP_004796146.1| - 0.00093 19.4 0.1 0.002 18.4 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.7 gi|344211826|ref|YP_004796146.1| - 0.005 16.2 0.1 0.0078 15.5 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|344211826|ref|YP_004796146.1| - 0.0054 17.2 0.2 0.0095 16.4 0.1 1.4 1 0 0 1 1 1 1 CoA binding domain NAD_binding_3 PF03447.11 gi|344211826|ref|YP_004796146.1| - 0.01 16.2 0.6 0.018 15.4 0.4 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|344211826|ref|YP_004796146.1| - 0.031 13.4 0.1 0.095 11.8 0.0 1.8 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|344211826|ref|YP_004796146.1| - 0.036 13.9 0.1 0.064 13.1 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase COX14 PF14880.1 gi|344211827|ref|YP_004796147.1| - 0.14 11.7 0.2 0.19 11.3 0.1 1.4 1 1 0 1 1 1 0 Cytochrome oxidase c assembly DUF3902 PF13042.1 gi|344211827|ref|YP_004796147.1| - 0.19 11.0 1.8 0.21 10.8 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3902) ABC_tran PF00005.22 gi|344211828|ref|YP_004796148.1| - 2.9e-33 115.0 0.0 5e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211828|ref|YP_004796148.1| - 3.6e-10 40.2 0.0 1.9e-05 24.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344211828|ref|YP_004796148.1| - 4.9e-05 22.6 0.3 0.03 13.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|344211828|ref|YP_004796148.1| - 8.6e-05 21.7 0.0 0.003 16.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|344211828|ref|YP_004796148.1| - 0.00032 20.7 0.0 1.5 8.9 0.0 4.0 3 1 0 3 3 3 1 TOBE domain AAA_17 PF13207.1 gi|344211828|ref|YP_004796148.1| - 0.00057 20.6 0.2 0.0038 18.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain TOBE_2 PF08402.5 gi|344211828|ref|YP_004796148.1| - 0.00071 19.5 0.0 0.006 16.5 0.0 2.6 2 1 0 2 2 2 1 TOBE domain AAA_29 PF13555.1 gi|344211828|ref|YP_004796148.1| - 0.00085 18.8 0.0 0.0019 17.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|344211828|ref|YP_004796148.1| - 0.0054 16.8 0.2 0.049 13.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|344211828|ref|YP_004796148.1| - 0.008 15.5 0.1 0.08 12.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|344211828|ref|YP_004796148.1| - 0.01 16.0 0.0 0.027 14.6 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_16 PF13191.1 gi|344211828|ref|YP_004796148.1| - 0.01 15.8 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.10 gi|344211828|ref|YP_004796148.1| - 0.013 14.2 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|344211828|ref|YP_004796148.1| - 0.014 15.5 0.3 0.17 12.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344211828|ref|YP_004796148.1| - 0.015 14.9 0.0 0.039 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|344211828|ref|YP_004796148.1| - 0.021 15.1 0.1 0.038 14.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|344211828|ref|YP_004796148.1| - 0.024 13.8 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|344211828|ref|YP_004796148.1| - 0.024 14.0 0.7 0.045 13.1 0.1 1.9 2 1 0 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|344211828|ref|YP_004796148.1| - 0.031 14.5 0.1 0.27 11.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|344211828|ref|YP_004796148.1| - 0.034 14.0 0.1 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|344211828|ref|YP_004796148.1| - 0.084 12.8 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344211828|ref|YP_004796148.1| - 0.11 12.1 0.1 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|344211829|ref|YP_004796149.1| - 8.4e-11 41.7 22.7 8.4e-11 41.7 15.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344211830|ref|YP_004796150.1| - 7e-14 51.7 20.0 7e-14 51.7 13.9 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|344211831|ref|YP_004796151.1| - 3.1e-17 63.2 0.6 6e-17 62.2 0.4 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344211831|ref|YP_004796151.1| - 3.1e-14 53.4 1.3 9.2e-14 51.8 0.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344211831|ref|YP_004796151.1| - 0.007 16.2 5.5 0.007 16.2 3.8 2.2 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence GIT_SHD PF08518.6 gi|344211831|ref|YP_004796151.1| - 0.023 14.0 0.5 0.052 12.9 0.0 1.7 2 0 0 2 2 2 0 Spa2 homology domain (SHD) of GIT Regulator_TrmB PF11495.3 gi|344211832|ref|YP_004796152.1| - 2.5e-77 259.0 0.3 3.1e-77 258.7 0.2 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|344211832|ref|YP_004796152.1| - 1.4e-14 53.5 0.0 2.8e-14 52.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344211832|ref|YP_004796152.1| - 0.0024 17.4 0.0 0.0071 15.9 0.0 1.8 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|344211832|ref|YP_004796152.1| - 0.0064 16.2 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|344211832|ref|YP_004796152.1| - 0.015 14.6 0.0 0.031 13.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|344211832|ref|YP_004796152.1| - 0.12 12.5 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Aldo_ket_red PF00248.16 gi|344211833|ref|YP_004796153.1| - 7.2e-81 271.1 0.0 9e-81 270.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF4536 PF15055.1 gi|344211834|ref|YP_004796154.1| - 0.019 15.0 2.3 0.04 13.9 1.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4536) TerY-C PF15616.1 gi|344211834|ref|YP_004796154.1| - 0.045 13.6 0.4 0.074 12.9 0.3 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain DUF3039 PF11238.3 gi|344211834|ref|YP_004796154.1| - 0.049 13.0 2.8 0.12 11.8 1.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) DNA_ligase_ZBD PF03119.11 gi|344211834|ref|YP_004796154.1| - 0.09 12.4 0.9 0.09 12.4 0.6 2.5 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|344211834|ref|YP_004796154.1| - 0.21 11.5 3.1 12 6.0 0.8 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Rad50_zn_hook PF04423.9 gi|344211834|ref|YP_004796154.1| - 0.26 10.8 1.6 0.88 9.0 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif DZR PF12773.2 gi|344211834|ref|YP_004796154.1| - 2.2 8.1 7.6 0.21 11.4 1.9 1.8 2 1 0 2 2 2 0 Double zinc ribbon Pribosyltran PF00156.22 gi|344211835|ref|YP_004796155.1| - 5e-24 84.4 0.0 7.9e-24 83.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|344211835|ref|YP_004796155.1| - 0.0019 17.8 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain PRTase_2 PF15609.1 gi|344211835|ref|YP_004796155.1| - 0.0029 16.9 0.2 0.025 13.8 0.1 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase HTH_7 PF02796.10 gi|344211835|ref|YP_004796155.1| - 0.016 15.0 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|344211835|ref|YP_004796155.1| - 0.022 14.3 0.1 0.064 12.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|344211835|ref|YP_004796155.1| - 0.035 13.3 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 UPRTase PF14681.1 gi|344211835|ref|YP_004796155.1| - 0.062 12.4 0.0 0.083 12.0 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_24 PF13412.1 gi|344211835|ref|YP_004796155.1| - 0.073 12.4 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|344211835|ref|YP_004796155.1| - 0.096 12.2 0.0 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain VitD-bind_III PF09164.5 gi|344211836|ref|YP_004796156.1| - 0.14 11.8 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Vitamin D binding protein, domain III Thiolase_N PF00108.18 gi|344211837|ref|YP_004796157.1| - 2.6e-14 52.8 1.1 6.8e-13 48.2 0.1 2.1 1 1 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|344211837|ref|YP_004796157.1| - 3.2e-11 43.1 7.1 6.3e-10 38.9 3.1 2.8 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|344211837|ref|YP_004796157.1| - 4.8e-08 32.4 1.1 6.6e-08 32.0 0.1 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|344211837|ref|YP_004796157.1| - 0.00094 18.7 2.8 0.045 13.4 0.5 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|344211837|ref|YP_004796157.1| - 0.011 15.6 4.4 0.21 11.4 0.0 3.7 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|344211838|ref|YP_004796158.1| - 1.3e-09 38.1 2.5 1.8e-09 37.7 1.7 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|344211838|ref|YP_004796158.1| - 0.0041 16.9 2.7 0.007 16.2 1.9 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Abhydrolase_6 PF12697.2 gi|344211839|ref|YP_004796159.1| - 7.9e-27 94.6 4.4 1e-26 94.2 3.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344211839|ref|YP_004796159.1| - 3.3e-13 49.5 0.0 1.5e-12 47.4 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344211839|ref|YP_004796159.1| - 2.2e-05 24.1 0.2 0.00075 19.1 0.1 2.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|344211839|ref|YP_004796159.1| - 0.0011 18.7 0.0 0.0026 17.5 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase ArgK PF03308.11 gi|344211840|ref|YP_004796160.1| - 5.6e-95 317.1 2.0 6.8e-95 316.8 1.4 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|344211840|ref|YP_004796160.1| - 4.4e-08 32.7 1.6 6.4e-07 28.9 1.1 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|344211840|ref|YP_004796160.1| - 8.3e-06 25.4 0.3 1.8e-05 24.3 0.2 1.5 1 1 0 1 1 1 1 AAA-like domain SRP54 PF00448.17 gi|344211840|ref|YP_004796160.1| - 2e-05 24.1 0.4 4.6e-05 22.9 0.3 1.6 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|344211840|ref|YP_004796160.1| - 3.8e-05 23.7 2.0 0.00044 20.2 0.0 2.8 2 1 0 3 3 3 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|344211840|ref|YP_004796160.1| - 6.4e-05 22.6 0.1 0.00021 20.9 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|344211840|ref|YP_004796160.1| - 8.2e-05 22.3 0.1 0.00024 20.8 0.0 1.8 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|344211840|ref|YP_004796160.1| - 0.0001 22.4 0.1 0.0084 16.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344211840|ref|YP_004796160.1| - 0.00012 21.7 1.0 0.00019 21.0 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|344211840|ref|YP_004796160.1| - 0.00015 22.5 1.9 0.00063 20.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|344211840|ref|YP_004796160.1| - 0.0002 21.0 0.3 0.0002 21.0 0.2 2.7 4 0 0 4 4 2 1 Part of AAA domain GTP_EFTU PF00009.22 gi|344211840|ref|YP_004796160.1| - 0.0017 17.7 0.0 1.1 8.6 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|344211840|ref|YP_004796160.1| - 0.0039 16.6 0.2 0.0098 15.4 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|344211840|ref|YP_004796160.1| - 0.0041 17.4 0.0 0.0073 16.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter NB-ARC PF00931.17 gi|344211840|ref|YP_004796160.1| - 0.017 13.9 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|344211840|ref|YP_004796160.1| - 0.02 13.9 0.1 0.035 13.1 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin CbiA PF01656.18 gi|344211840|ref|YP_004796160.1| - 0.02 14.2 0.2 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain KAP_NTPase PF07693.9 gi|344211840|ref|YP_004796160.1| - 0.021 13.8 0.0 0.034 13.1 0.0 1.5 1 0 0 1 1 1 0 KAP family P-loop domain MobB PF03205.9 gi|344211840|ref|YP_004796160.1| - 0.021 14.5 0.5 0.045 13.4 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|344211840|ref|YP_004796160.1| - 0.039 13.1 0.1 0.068 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|344211840|ref|YP_004796160.1| - 0.048 12.8 0.0 0.11 11.7 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|344211840|ref|YP_004796160.1| - 0.053 13.4 0.2 0.053 13.4 0.2 1.8 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|344211840|ref|YP_004796160.1| - 0.061 13.6 0.7 0.15 12.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain Peptidase_S41 PF03572.13 gi|344211840|ref|YP_004796160.1| - 0.066 12.6 1.0 16 4.9 0.1 2.9 3 0 0 3 3 3 0 Peptidase family S41 NACHT PF05729.7 gi|344211840|ref|YP_004796160.1| - 0.068 12.8 0.2 0.27 10.8 0.1 2.1 2 0 0 2 2 2 0 NACHT domain PRK PF00485.13 gi|344211840|ref|YP_004796160.1| - 0.068 12.7 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|344211840|ref|YP_004796160.1| - 0.07 13.0 0.4 0.18 11.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|344211840|ref|YP_004796160.1| - 0.078 13.1 0.1 0.8 9.9 0.0 2.5 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|344211840|ref|YP_004796160.1| - 0.081 11.5 0.0 0.14 10.7 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|344211840|ref|YP_004796160.1| - 0.088 12.7 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain HATPase_c_4 PF13749.1 gi|344211840|ref|YP_004796160.1| - 0.11 12.3 0.0 1.8 8.3 0.0 2.6 2 0 0 2 2 2 0 ATP-dependent DNA helicase recG C-terminal Miro PF08477.8 gi|344211840|ref|YP_004796160.1| - 0.12 12.8 0.1 0.31 11.5 0.1 1.7 2 0 0 2 2 1 0 Miro-like protein DUF815 PF05673.8 gi|344211840|ref|YP_004796160.1| - 0.14 11.0 0.0 0.26 10.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PIF1 PF05970.9 gi|344211840|ref|YP_004796160.1| - 0.16 10.9 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_25 PF13481.1 gi|344211840|ref|YP_004796160.1| - 0.3 10.4 2.8 0.23 10.8 0.2 2.1 2 1 0 2 2 2 0 AAA domain B12-binding PF02310.14 gi|344211841|ref|YP_004796161.1| - 5.4e-20 71.4 0.7 6.4e-20 71.2 0.5 1.1 1 0 0 1 1 1 1 B12 binding domain TPP_enzyme_N PF02776.13 gi|344211841|ref|YP_004796161.1| - 0.12 11.8 0.1 5.1 6.5 0.0 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Glycos_transf_2 PF00535.21 gi|344211842|ref|YP_004796162.1| - 1.5e-27 96.3 0.2 1.9e-27 96.0 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211842|ref|YP_004796162.1| - 2.5e-09 37.2 1.1 3.2e-09 36.9 0.7 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|344211842|ref|YP_004796162.1| - 7.8e-05 22.9 0.1 0.00018 21.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|344211842|ref|YP_004796162.1| - 0.0072 16.4 0.2 0.013 15.5 0.1 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.1 gi|344211842|ref|YP_004796162.1| - 0.098 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 DUF2304 PF10066.4 gi|344211843|ref|YP_004796163.1| - 8.3e-09 35.3 1.8 9.8e-09 35.0 1.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2304) TSC22 PF01166.13 gi|344211843|ref|YP_004796163.1| - 0.059 13.3 0.7 0.085 12.8 0.5 1.3 1 0 0 1 1 1 0 TSC-22/dip/bun family Tetraspannin PF00335.15 gi|344211843|ref|YP_004796163.1| - 0.072 12.3 0.1 0.088 12.0 0.1 1.2 1 0 0 1 1 1 0 Tetraspanin family 7tm_7 PF08395.7 gi|344211843|ref|YP_004796163.1| - 0.074 12.0 2.1 0.11 11.5 1.5 1.3 1 1 0 1 1 1 0 7tm Chemosensory receptor DUF373 PF04123.8 gi|344211843|ref|YP_004796163.1| - 0.27 10.2 2.9 0.31 9.9 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3098 PF11297.3 gi|344211843|ref|YP_004796163.1| - 0.3 10.8 3.9 0.6 9.8 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) DUF3353 PF11833.3 gi|344211843|ref|YP_004796163.1| - 1.6 8.1 5.7 2 7.8 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF3473 PF11959.3 gi|344211844|ref|YP_004796164.1| - 2.7e-23 81.8 0.0 3.7e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3473) Polysacc_deac_1 PF01522.16 gi|344211844|ref|YP_004796164.1| - 4.4e-23 81.2 0.0 7.2e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|344211844|ref|YP_004796164.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 UPF0104 PF03706.8 gi|344211845|ref|YP_004796165.1| - 2.9e-25 89.1 41.4 3.4e-25 88.9 28.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) PMT_2 PF13231.1 gi|344211846|ref|YP_004796166.1| - 2.2e-12 47.1 14.8 2.2e-12 47.1 10.3 3.1 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|344211846|ref|YP_004796166.1| - 3.2e-07 29.9 12.5 9.1e-07 28.4 8.7 1.8 1 1 0 1 1 1 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glycos_transf_2 PF00535.21 gi|344211847|ref|YP_004796167.1| - 6e-22 78.1 0.0 7.9e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211847|ref|YP_004796167.1| - 8e-18 65.0 0.5 1e-17 64.7 0.4 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|344211847|ref|YP_004796167.1| - 8.2e-10 38.2 0.0 4.8e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|344211847|ref|YP_004796167.1| - 1.3e-09 38.0 0.6 2.3e-09 37.2 0.4 1.3 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|344211847|ref|YP_004796167.1| - 1e-05 24.8 0.0 2e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|344211847|ref|YP_004796167.1| - 0.00052 20.1 0.0 0.00055 20.0 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain MFS_1 PF07690.11 gi|344211848|ref|YP_004796168.1| - 8.8e-28 97.0 58.5 3.8e-22 78.4 15.8 2.0 1 1 0 2 2 2 2 Major Facilitator Superfamily Halo_GVPC PF05465.8 gi|344211848|ref|YP_004796168.1| - 0.34 10.8 0.1 0.34 10.8 0.1 1.8 2 0 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat DUF3491 PF11996.3 gi|344211850|ref|YP_004796170.1| - 0.0027 15.3 0.0 0.0031 15.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3491) DUF3693 PF12472.3 gi|344211850|ref|YP_004796170.1| - 0.66 9.6 2.9 1.3 8.6 0.2 2.1 1 1 1 2 2 2 0 Phage related protein DUF4129 PF13559.1 gi|344211852|ref|YP_004796172.1| - 3.2e-08 33.4 2.9 3.2e-08 33.4 2.0 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4480 PF13715.1 gi|344211852|ref|YP_004796172.1| - 0.012 15.6 0.4 3.6 7.6 0.0 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) DUF2254 PF10011.4 gi|344211852|ref|YP_004796172.1| - 0.2 10.1 2.5 0.31 9.4 1.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) CarboxypepD_reg PF13620.1 gi|344211852|ref|YP_004796172.1| - 1.7 8.7 29.2 0.17 11.9 2.2 5.3 4 2 1 5 5 5 0 Carboxypeptidase regulatory-like domain DUF58 PF01882.13 gi|344211854|ref|YP_004796174.1| - 8.2e-17 61.1 0.4 2.5e-16 59.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|344211854|ref|YP_004796174.1| - 9.4e-09 35.2 3.5 2.7e-08 33.7 2.4 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|344211854|ref|YP_004796174.1| - 4.9e-07 29.0 0.0 1.1e-06 27.9 0.0 1.5 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|344211854|ref|YP_004796174.1| - 0.0013 18.7 1.7 0.0017 18.3 0.1 2.0 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|344211854|ref|YP_004796174.1| - 0.0041 17.1 0.0 0.0086 16.1 0.0 1.5 1 0 0 1 1 1 1 CARDB Alpha_adaptinC2 PF02883.15 gi|344211854|ref|YP_004796174.1| - 0.17 12.1 0.0 0.31 11.3 0.0 1.3 1 0 0 1 1 1 0 Adaptin C-terminal domain AAA_3 PF07726.6 gi|344211856|ref|YP_004796176.1| - 1.8e-65 218.4 0.1 3e-65 217.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344211856|ref|YP_004796176.1| - 1.7e-15 56.9 0.0 4.7e-15 55.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|344211856|ref|YP_004796176.1| - 5e-07 29.9 0.0 1.8e-06 28.2 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|344211856|ref|YP_004796176.1| - 1.1e-05 24.9 0.0 9.7e-05 21.9 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|344211856|ref|YP_004796176.1| - 2.1e-05 23.6 0.0 0.00032 19.8 0.0 2.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MCM PF00493.18 gi|344211856|ref|YP_004796176.1| - 2.3e-05 23.3 0.0 0.00017 20.5 0.0 2.0 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|344211856|ref|YP_004796176.1| - 0.0056 15.8 0.0 3 6.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|344211856|ref|YP_004796176.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|344211856|ref|YP_004796176.1| - 0.023 15.4 0.0 0.043 14.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|344211856|ref|YP_004796176.1| - 0.026 14.2 0.6 0.11 12.2 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_22 PF13401.1 gi|344211856|ref|YP_004796176.1| - 0.13 12.3 0.0 0.6 10.2 0.0 2.0 2 1 1 3 3 3 0 AAA domain DUF2237 PF09996.4 gi|344211857|ref|YP_004796177.1| - 3.4e-52 174.8 0.0 3.8e-52 174.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) AAA_12 PF13087.1 gi|344211858|ref|YP_004796178.1| - 3.4e-41 140.8 0.0 5.2e-41 140.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|344211858|ref|YP_004796178.1| - 4.9e-39 134.3 1.9 5.8e-20 71.8 0.5 3.2 4 0 0 4 4 3 2 AAA domain Dna2 PF08696.6 gi|344211858|ref|YP_004796178.1| - 8.2e-37 126.5 0.0 3.4e-36 124.5 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|344211858|ref|YP_004796178.1| - 2.2e-19 69.8 1.9 2.2e-19 69.8 1.3 2.7 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|344211858|ref|YP_004796178.1| - 1.7e-16 59.6 2.1 1.5e-13 50.2 0.2 3.4 3 0 0 3 3 3 2 Part of AAA domain PDDEXK_1 PF12705.2 gi|344211858|ref|YP_004796178.1| - 1.6e-12 47.4 0.3 3.7e-12 46.1 0.0 1.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.13 gi|344211858|ref|YP_004796178.1| - 8.4e-08 32.0 0.1 0.026 14.0 0.0 3.5 4 0 0 4 4 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|344211858|ref|YP_004796178.1| - 1.3e-06 27.9 0.0 2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.4 gi|344211858|ref|YP_004796178.1| - 3e-05 23.1 0.1 7.6e-05 21.8 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.1 gi|344211858|ref|YP_004796178.1| - 0.00012 22.1 0.0 0.00033 20.7 0.0 1.8 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_16 PF13191.1 gi|344211858|ref|YP_004796178.1| - 0.0003 20.8 0.2 0.0012 18.8 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain Helicase_RecD PF05127.9 gi|344211858|ref|YP_004796178.1| - 0.00032 20.4 0.0 0.00074 19.2 0.0 1.6 1 0 0 1 1 1 1 Helicase AAA_22 PF13401.1 gi|344211858|ref|YP_004796178.1| - 0.00062 19.9 0.0 0.0032 17.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.9 gi|344211858|ref|YP_004796178.1| - 0.00079 18.4 0.0 0.041 12.8 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase ResIII PF04851.10 gi|344211858|ref|YP_004796178.1| - 0.0028 17.5 0.0 0.0058 16.4 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CbiA PF01656.18 gi|344211858|ref|YP_004796178.1| - 0.007 15.7 0.6 0.027 13.9 0.2 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|344211858|ref|YP_004796178.1| - 0.0098 15.3 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|344211858|ref|YP_004796178.1| - 0.013 14.1 0.0 0.021 13.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|344211858|ref|YP_004796178.1| - 0.017 14.6 0.0 0.11 11.9 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain AAA PF00004.24 gi|344211858|ref|YP_004796178.1| - 0.018 15.2 0.2 0.065 13.4 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|344211858|ref|YP_004796178.1| - 0.023 13.9 0.1 0.07 12.3 0.0 1.8 1 1 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|344211858|ref|YP_004796178.1| - 0.024 14.0 0.0 0.059 12.7 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|344211858|ref|YP_004796178.1| - 0.032 13.3 0.0 0.078 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|344211858|ref|YP_004796178.1| - 0.035 13.5 0.1 0.11 11.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|344211858|ref|YP_004796178.1| - 0.047 12.5 0.0 0.081 11.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|344211858|ref|YP_004796178.1| - 0.055 13.3 0.0 0.16 11.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|344211858|ref|YP_004796178.1| - 0.093 12.2 0.0 0.25 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|344211858|ref|YP_004796178.1| - 0.097 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) bPH_2 PF03703.9 gi|344211859|ref|YP_004796179.1| - 3.5e-50 167.9 2.8 6e-19 67.8 0.0 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|344211859|ref|YP_004796179.1| - 0.0017 18.1 0.0 6.6 6.6 0.0 3.2 3 0 0 3 3 3 2 Bacterial PH domain bPH_2 PF03703.9 gi|344211860|ref|YP_004796180.1| - 1.6e-16 60.0 0.1 2.1e-16 59.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain PspC PF04024.7 gi|344211860|ref|YP_004796180.1| - 1.4 8.4 6.6 0.39 10.2 1.1 2.3 1 1 0 2 2 2 0 PspC domain CytB6-F_Fe-S PF08802.5 gi|344211861|ref|YP_004796181.1| - 0.17 11.9 0.6 0.29 11.1 0.4 1.3 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.4 gi|344211861|ref|YP_004796181.1| - 0.2 11.7 3.7 0.54 10.3 2.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DEAD_assoc PF08494.6 gi|344211862|ref|YP_004796182.1| - 2.6e-49 167.5 0.2 4.8e-49 166.6 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|344211862|ref|YP_004796182.1| - 3.6e-31 107.9 0.0 3.6e-29 101.4 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|344211862|ref|YP_004796182.1| - 2.2e-16 59.5 0.0 8.4e-15 54.3 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|344211862|ref|YP_004796182.1| - 3.5e-09 36.7 0.0 8.8e-09 35.4 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|344211862|ref|YP_004796182.1| - 0.0008 19.5 0.2 0.0089 16.1 0.0 2.8 3 1 0 3 3 3 1 AAA domain MGAT2 PF05060.9 gi|344211862|ref|YP_004796182.1| - 0.12 11.2 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) DHDPS PF00701.17 gi|344211863|ref|YP_004796183.1| - 1.4e-58 197.8 0.0 1.5e-58 197.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF348 PF03990.9 gi|344211863|ref|YP_004796183.1| - 0.19 11.3 0.0 0.19 11.3 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF348) HTH_20 PF12840.2 gi|344211864|ref|YP_004796184.1| - 1.5e-13 50.3 0.0 2.7e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344211864|ref|YP_004796184.1| - 1e-08 34.4 0.0 1.5e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344211864|ref|YP_004796184.1| - 7.3e-08 31.9 0.0 1.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344211864|ref|YP_004796184.1| - 1.2e-07 31.2 0.0 2.5e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|344211864|ref|YP_004796184.1| - 0.00037 20.1 0.0 0.00066 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|344211864|ref|YP_004796184.1| - 0.00063 20.0 0.0 0.0014 18.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_42 PF06224.7 gi|344211864|ref|YP_004796184.1| - 0.0053 16.1 0.0 0.0099 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|344211864|ref|YP_004796184.1| - 0.015 15.1 0.0 0.055 13.3 0.0 2.0 1 0 0 1 1 1 0 Sigma-70 region 3 TrmB PF01978.14 gi|344211864|ref|YP_004796184.1| - 0.019 14.6 0.1 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|344211864|ref|YP_004796184.1| - 0.03 14.3 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Sigma70_r4 PF04545.11 gi|344211864|ref|YP_004796184.1| - 0.04 13.2 0.0 0.075 12.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_45 PF14947.1 gi|344211864|ref|YP_004796184.1| - 0.084 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Methyltransf_31 PF13847.1 gi|344211865|ref|YP_004796185.1| - 1e-16 60.8 0.0 1.8e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344211865|ref|YP_004796185.1| - 2.2e-15 57.2 0.3 4.8e-15 56.0 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344211865|ref|YP_004796185.1| - 3.1e-12 46.8 0.1 7e-12 45.6 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344211865|ref|YP_004796185.1| - 6.6e-12 45.7 0.0 1.2e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344211865|ref|YP_004796185.1| - 6.6e-10 38.4 0.1 1.1e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|344211865|ref|YP_004796185.1| - 8.6e-10 38.8 0.0 1.9e-09 37.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344211865|ref|YP_004796185.1| - 1.9e-07 30.9 0.0 3.1e-07 30.2 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344211865|ref|YP_004796185.1| - 2.4e-07 30.8 0.2 3.6e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344211865|ref|YP_004796185.1| - 1.1e-05 24.8 0.0 1.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|344211865|ref|YP_004796185.1| - 0.0034 16.5 0.0 0.0046 16.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|344211865|ref|YP_004796185.1| - 0.0037 16.9 0.0 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|344211865|ref|YP_004796185.1| - 0.0083 15.2 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|344211865|ref|YP_004796185.1| - 0.015 14.8 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|344211865|ref|YP_004796185.1| - 0.017 14.1 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Putative methyltransferase RrnaAD PF00398.15 gi|344211865|ref|YP_004796185.1| - 0.031 13.2 0.0 0.045 12.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DREV PF05219.7 gi|344211865|ref|YP_004796185.1| - 0.035 12.9 0.0 0.05 12.4 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase tRNA_U5-meth_tr PF05958.6 gi|344211865|ref|YP_004796185.1| - 0.04 12.6 0.0 0.051 12.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase UPF0020 PF01170.13 gi|344211865|ref|YP_004796185.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Lactamase_B_2 PF12706.2 gi|344211866|ref|YP_004796186.1| - 4.7e-15 55.6 0.3 5.7e-15 55.3 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|344211866|ref|YP_004796186.1| - 9.6e-14 51.4 5.1 2.5e-13 50.1 3.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|344211866|ref|YP_004796186.1| - 0.00033 20.4 0.0 0.00048 19.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|344211867|ref|YP_004796187.1| - 3.9e-16 58.7 0.2 6.9e-16 57.9 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|344211867|ref|YP_004796187.1| - 8.3e-11 42.0 0.4 1.6e-10 41.2 0.3 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|344211867|ref|YP_004796187.1| - 4.4e-05 24.0 0.7 0.00011 22.7 0.2 1.9 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|344211867|ref|YP_004796187.1| - 0.00038 20.3 0.7 0.0026 17.7 0.0 2.4 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|344211867|ref|YP_004796187.1| - 0.0011 18.4 0.1 0.003 17.0 0.0 1.8 2 1 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.1 gi|344211867|ref|YP_004796187.1| - 0.0057 16.4 0.0 0.013 15.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|344211867|ref|YP_004796187.1| - 0.064 12.9 0.1 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|344211867|ref|YP_004796187.1| - 0.097 12.3 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 GHKL domain TPR_7 PF13176.1 gi|344211867|ref|YP_004796187.1| - 0.11 12.3 0.4 0.56 10.1 0.2 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat HAD_2 PF13419.1 gi|344211868|ref|YP_004796188.1| - 8.3e-14 52.1 0.0 9.9e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344211868|ref|YP_004796188.1| - 4.9e-09 35.7 0.0 1e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|344211868|ref|YP_004796188.1| - 3.3e-05 24.3 0.0 0.015 15.6 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_20 PF12840.2 gi|344211869|ref|YP_004796189.1| - 4.1e-10 39.3 0.2 8.1e-10 38.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344211869|ref|YP_004796189.1| - 1.2e-05 24.9 0.0 1.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|344211869|ref|YP_004796189.1| - 3.4e-05 23.1 0.1 6.9e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344211869|ref|YP_004796189.1| - 0.00013 21.5 0.3 0.00039 19.9 0.2 1.9 1 1 1 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|344211869|ref|YP_004796189.1| - 0.00044 19.8 0.1 0.0009 18.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344211869|ref|YP_004796189.1| - 0.0018 17.9 0.1 0.0031 17.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|344211869|ref|YP_004796189.1| - 0.0042 16.7 0.1 0.0096 15.5 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|344211869|ref|YP_004796189.1| - 0.0086 16.3 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|344211869|ref|YP_004796189.1| - 0.0098 15.5 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|344211869|ref|YP_004796189.1| - 0.032 14.2 0.0 0.053 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|344211869|ref|YP_004796189.1| - 0.051 13.1 0.0 0.095 12.2 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.15 gi|344211869|ref|YP_004796189.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.1 gi|344211869|ref|YP_004796189.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix eRF1_1 PF03463.10 gi|344211870|ref|YP_004796190.1| - 6.6e-34 116.3 0.2 1e-33 115.7 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|344211870|ref|YP_004796190.1| - 6.4e-22 77.9 1.7 1.4e-21 76.8 0.0 2.3 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|344211870|ref|YP_004796190.1| - 9.1e-21 74.5 0.2 3.9e-20 72.5 0.1 1.9 2 0 0 2 2 2 1 eRF1 domain 2 Glyco_hydro_3_C PF01915.17 gi|344211870|ref|YP_004796190.1| - 0.028 13.9 0.1 0.045 13.2 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DUF4013 PF13197.1 gi|344211871|ref|YP_004796191.1| - 6.9e-34 116.6 19.4 6.9e-34 116.6 13.4 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) AIRS_C PF02769.17 gi|344211872|ref|YP_004796192.1| - 1.2e-24 87.0 1.1 2.1e-24 86.2 0.8 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|344211872|ref|YP_004796192.1| - 5.8e-06 26.4 0.2 5.8e-06 26.4 0.1 2.5 2 1 1 3 3 3 1 AIR synthase related protein, N-terminal domain FbpA PF05833.6 gi|344211873|ref|YP_004796193.1| - 7.1e-84 281.9 0.0 9.9e-84 281.4 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|344211873|ref|YP_004796193.1| - 9.5e-26 89.5 0.0 1.6e-25 88.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) NAD_binding_8 PF13450.1 gi|344211874|ref|YP_004796194.1| - 3.7e-14 52.4 1.0 8.3e-14 51.3 0.7 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|344211874|ref|YP_004796194.1| - 1e-11 44.6 2.0 9.8e-06 24.9 0.1 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|344211874|ref|YP_004796194.1| - 6.7e-08 31.8 1.5 2.5e-06 26.6 0.4 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344211874|ref|YP_004796194.1| - 0.00054 19.9 0.0 0.0019 18.1 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344211874|ref|YP_004796194.1| - 0.0014 18.3 0.2 0.46 10.2 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|344211874|ref|YP_004796194.1| - 0.0015 18.5 1.0 0.0059 16.6 0.7 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|344211874|ref|YP_004796194.1| - 0.0028 17.1 0.1 0.11 11.9 0.1 2.4 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.19 gi|344211874|ref|YP_004796194.1| - 0.0042 15.9 4.9 0.0059 15.4 1.8 2.1 1 1 1 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|344211874|ref|YP_004796194.1| - 0.0091 15.1 0.3 0.014 14.5 0.2 1.2 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|344211874|ref|YP_004796194.1| - 0.033 12.6 0.2 0.058 11.8 0.1 1.4 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox PF00070.22 gi|344211874|ref|YP_004796194.1| - 0.062 13.7 0.7 0.16 12.4 0.2 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|344211874|ref|YP_004796194.1| - 0.11 12.6 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|344211874|ref|YP_004796194.1| - 0.13 11.1 1.8 0.29 9.9 0.6 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|344211874|ref|YP_004796194.1| - 0.19 11.3 0.2 0.29 10.7 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MIP-T3 PF10243.4 gi|344211875|ref|YP_004796195.1| - 0.00045 18.8 40.1 0.00058 18.4 27.8 1.2 1 0 0 1 1 1 1 Microtubule-binding protein MIP-T3 FAM196 PF15265.1 gi|344211875|ref|YP_004796195.1| - 7 5.7 29.2 9.4 5.3 20.2 1.1 1 0 0 1 1 1 0 FAM196 family CARDB PF07705.6 gi|344211876|ref|YP_004796196.1| - 1.3e-34 118.2 59.0 2.5e-07 30.6 1.4 10.1 8 2 2 10 10 10 9 CARDB A2M PF00207.17 gi|344211876|ref|YP_004796196.1| - 1.1e-05 24.8 3.9 0.3 10.7 0.0 5.9 6 0 0 6 6 6 2 Alpha-2-macroglobulin family Cupredoxin_1 PF13473.1 gi|344211876|ref|YP_004796196.1| - 0.0064 16.3 10.0 19 5.1 0.0 7.2 6 2 0 7 7 7 1 Cupredoxin-like domain DUF2393 PF09624.5 gi|344211876|ref|YP_004796196.1| - 0.15 11.5 3.1 5.1 6.6 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) DUF1616 PF07760.6 gi|344211876|ref|YP_004796196.1| - 3.9 6.5 5.8 13 4.7 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF1616) Radical_SAM PF04055.16 gi|344211877|ref|YP_004796197.1| - 2.6e-24 86.2 0.1 3.6e-23 82.5 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|344211877|ref|YP_004796197.1| - 2.1e-12 46.8 0.1 4.8e-12 45.7 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344211877|ref|YP_004796197.1| - 0.0027 17.8 0.0 0.012 15.7 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344211877|ref|YP_004796197.1| - 0.057 13.5 0.1 0.48 10.5 0.0 2.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Peptidase_C39_2 PF13529.1 gi|344211877|ref|YP_004796197.1| - 0.11 12.8 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 Peptidase_C39 like family MCPsignal PF00015.16 gi|344211879|ref|YP_004796199.1| - 4.2e-44 150.6 41.5 4.2e-44 150.6 28.7 4.2 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344211879|ref|YP_004796199.1| - 0.00043 20.4 0.2 0.00043 20.4 0.2 4.7 5 1 0 5 5 5 1 HAMP domain NfeD PF01957.13 gi|344211879|ref|YP_004796199.1| - 0.056 13.5 0.0 0.056 13.5 0.0 2.2 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Seryl_tRNA_N PF02403.17 gi|344211879|ref|YP_004796199.1| - 0.057 13.4 47.9 0.25 11.3 8.1 5.6 1 1 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Pex24p PF06398.6 gi|344211879|ref|YP_004796199.1| - 0.067 11.9 1.1 6.4 5.4 0.0 2.5 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin IncA PF04156.9 gi|344211879|ref|YP_004796199.1| - 0.46 10.0 41.1 0.58 9.7 8.3 4.0 1 1 2 3 3 3 0 IncA protein Laminin_II PF06009.7 gi|344211879|ref|YP_004796199.1| - 1.2 8.9 47.6 0.081 12.6 2.3 5.2 3 2 2 5 5 5 0 Laminin Domain II DUF948 PF06103.6 gi|344211879|ref|YP_004796199.1| - 3.1 7.7 36.3 0.42 10.5 4.7 6.1 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.6 gi|344211879|ref|YP_004796199.1| - 4.4 7.7 42.8 1.3 9.4 2.3 5.6 3 2 3 6 6 6 0 Syntaxin 6, N-terminal Spc7 PF08317.6 gi|344211879|ref|YP_004796199.1| - 8.4 4.9 43.4 0.44 9.1 6.7 4.1 2 2 2 4 4 4 0 Spc7 kinetochore protein Cupin_2 PF07883.6 gi|344211880|ref|YP_004796200.1| - 1.7e-13 49.8 0.1 2.5e-13 49.2 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|344211880|ref|YP_004796200.1| - 0.00015 21.4 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|344211880|ref|YP_004796200.1| - 0.0056 16.0 0.0 0.011 15.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|344211880|ref|YP_004796200.1| - 0.017 14.8 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|344211880|ref|YP_004796200.1| - 0.018 14.4 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF2917 PF11142.3 gi|344211880|ref|YP_004796200.1| - 0.038 13.1 0.1 0.49 9.6 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF2917) Ectoine_synth PF06339.7 gi|344211880|ref|YP_004796200.1| - 0.063 13.2 0.0 0.082 12.8 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase tRNA_anti-codon PF01336.20 gi|344211881|ref|YP_004796201.1| - 4.6e-12 45.6 0.1 1.2e-11 44.3 0.1 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|344211881|ref|YP_004796201.1| - 1.7e-07 31.2 1.5 3.3e-07 30.2 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain tRNA_anti_2 PF13742.1 gi|344211881|ref|YP_004796201.1| - 0.002 17.9 0.0 0.0056 16.5 0.0 1.8 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Macoilin PF09726.4 gi|344211881|ref|YP_004796201.1| - 1.1 7.5 5.4 0.39 8.9 2.1 1.4 2 0 0 2 2 2 0 Transmembrane protein Hid1 PF12722.2 gi|344211881|ref|YP_004796201.1| - 6.8 4.2 5.1 9.3 3.7 3.5 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Yip1 PF04893.12 gi|344211883|ref|YP_004796203.1| - 2.5e-09 36.8 10.7 3.4e-09 36.4 7.4 1.2 1 0 0 1 1 1 1 Yip1 domain FMN_red PF03358.10 gi|344211884|ref|YP_004796204.1| - 8.6e-35 119.4 0.0 1e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|344211884|ref|YP_004796204.1| - 2.2e-07 30.6 0.0 3.2e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold B12-binding PF02310.14 gi|344211886|ref|YP_004796206.1| - 2e-14 53.5 0.4 3.3e-14 52.7 0.2 1.4 1 1 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|344211886|ref|YP_004796206.1| - 0.0023 17.3 0.2 0.0042 16.4 0.1 1.4 1 1 0 1 1 1 1 Periplasmic binding protein ADH_zinc_N PF00107.21 gi|344211886|ref|YP_004796206.1| - 0.0051 16.3 0.1 0.013 15.0 0.0 1.7 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Glyco_transf_28 PF03033.15 gi|344211886|ref|YP_004796206.1| - 0.026 14.2 0.2 0.081 12.6 0.1 1.8 1 1 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain OKR_DC_1_N PF03709.10 gi|344211886|ref|YP_004796206.1| - 0.12 12.4 0.1 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Acetyltransf_1 PF00583.19 gi|344211887|ref|YP_004796207.1| - 4.4e-15 55.4 0.0 6.9e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344211887|ref|YP_004796207.1| - 8.4e-12 45.2 0.0 1.2e-11 44.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344211887|ref|YP_004796207.1| - 4.9e-11 42.6 0.0 6.8e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344211887|ref|YP_004796207.1| - 1.2e-09 38.3 0.0 1.4e-09 38.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344211887|ref|YP_004796207.1| - 7.7e-07 28.7 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|344211887|ref|YP_004796207.1| - 3.1e-06 27.4 0.0 3.5e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|344211887|ref|YP_004796207.1| - 0.0005 20.0 1.3 0.00089 19.2 0.5 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344211887|ref|YP_004796207.1| - 0.0021 17.8 0.1 0.0052 16.6 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344211887|ref|YP_004796207.1| - 0.0037 17.1 0.0 0.0095 15.8 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Na_Ca_ex PF01699.19 gi|344211888|ref|YP_004796208.1| - 3.9e-35 120.4 23.5 2.6e-18 65.9 7.0 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein HhH-GPD PF00730.20 gi|344211889|ref|YP_004796209.1| - 8.6e-17 61.3 0.0 1.6e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|344211889|ref|YP_004796209.1| - 1.9e-05 24.1 0.0 4.1e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HATPase_c PF02518.21 gi|344211890|ref|YP_004796210.1| - 1.4e-18 66.6 0.0 3.1e-18 65.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HAMP PF00672.20 gi|344211890|ref|YP_004796210.1| - 6.8e-15 54.9 3.2 1.2e-14 54.2 0.2 2.6 2 0 0 2 2 2 1 HAMP domain HisKA PF00512.20 gi|344211890|ref|YP_004796210.1| - 1.1e-14 54.1 1.4 1.1e-14 54.1 1.0 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain IncA PF04156.9 gi|344211890|ref|YP_004796210.1| - 0.00025 20.6 0.2 0.00025 20.6 0.1 2.3 2 0 0 2 2 2 1 IncA protein HATPase_c_3 PF13589.1 gi|344211890|ref|YP_004796210.1| - 0.00082 19.0 0.0 0.0021 17.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Tropomyosin PF00261.15 gi|344211890|ref|YP_004796210.1| - 0.021 13.9 3.0 0.39 9.7 0.7 2.1 2 0 0 2 2 2 0 Tropomyosin Cast PF10174.4 gi|344211890|ref|YP_004796210.1| - 0.035 12.1 3.5 0.053 11.5 2.4 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Metal_resist PF13801.1 gi|344211890|ref|YP_004796210.1| - 0.035 14.1 7.0 1.3 9.0 2.0 2.8 1 1 0 2 2 2 0 Heavy-metal resistance GAS PF13851.1 gi|344211890|ref|YP_004796210.1| - 0.038 13.1 1.1 0.075 12.2 0.8 1.4 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Hemerythrin PF01814.18 gi|344211890|ref|YP_004796210.1| - 0.17 12.0 6.7 1.7 8.7 4.5 2.6 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain CENP-F_leu_zip PF10473.4 gi|344211890|ref|YP_004796210.1| - 0.25 11.2 3.0 2.9 7.7 0.3 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4010 PF13194.1 gi|344211892|ref|YP_004796212.1| - 6.1e-53 179.2 25.2 6.1e-53 179.2 17.5 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|344211892|ref|YP_004796212.1| - 3.8e-14 52.6 11.2 3.8e-14 52.6 7.8 3.9 3 1 1 4 4 4 1 MgtC family HATPase_c PF02518.21 gi|344211893|ref|YP_004796213.1| - 2.5e-20 72.2 0.0 5.2e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|344211893|ref|YP_004796213.1| - 8.1e-20 70.7 0.0 4.4e-12 45.7 0.0 3.3 2 1 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|344211893|ref|YP_004796213.1| - 8.2e-19 67.6 1.5 1.2e-08 34.9 0.1 3.0 2 1 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|344211893|ref|YP_004796213.1| - 1.3e-15 57.5 0.1 1.5e-08 34.9 0.0 3.4 2 1 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|344211893|ref|YP_004796213.1| - 1.6e-13 50.5 0.0 3.6e-13 49.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|344211893|ref|YP_004796213.1| - 1.3e-12 47.4 0.8 3.5e-12 46.1 0.6 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|344211893|ref|YP_004796213.1| - 1.9e-12 46.5 0.0 3.2e-05 23.6 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_11 PF14598.1 gi|344211893|ref|YP_004796213.1| - 5.2e-05 23.1 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.1 gi|344211893|ref|YP_004796213.1| - 0.00066 19.4 0.1 0.0029 17.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|344211893|ref|YP_004796213.1| - 0.048 13.6 0.2 1.8 8.5 0.1 3.1 2 1 0 2 2 2 0 PAS fold PadR PF03551.9 gi|344211894|ref|YP_004796214.1| - 3.4e-17 61.9 1.0 4e-17 61.7 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|344211894|ref|YP_004796214.1| - 0.00011 22.3 0.0 0.00015 22.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|344211894|ref|YP_004796214.1| - 0.0031 17.2 0.1 0.0041 16.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|344211894|ref|YP_004796214.1| - 0.0094 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|344211894|ref|YP_004796214.1| - 0.016 14.8 0.4 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|344211894|ref|YP_004796214.1| - 0.026 14.5 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|344211894|ref|YP_004796214.1| - 0.074 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.6 gi|344211895|ref|YP_004796215.1| - 0.06 13.0 0.1 0.065 12.9 0.1 1.1 1 0 0 1 1 1 0 CDC6, C terminal HypA PF01155.14 gi|344211896|ref|YP_004796216.1| - 0.0065 16.1 0.6 0.011 15.3 0.4 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|344211896|ref|YP_004796216.1| - 0.011 15.5 0.3 0.021 14.6 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|344211896|ref|YP_004796216.1| - 0.061 12.8 1.0 0.13 11.7 0.7 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit ArfGap PF01412.13 gi|344211896|ref|YP_004796216.1| - 0.077 12.7 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf TF_Zn_Ribbon PF08271.7 gi|344211896|ref|YP_004796216.1| - 0.086 12.1 2.0 0.18 11.1 1.3 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DUF1451 PF07295.6 gi|344211896|ref|YP_004796216.1| - 0.088 12.5 0.8 0.3 10.8 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) A2L_zn_ribbon PF08792.5 gi|344211896|ref|YP_004796216.1| - 0.09 12.2 1.0 9.6 5.8 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|344211896|ref|YP_004796216.1| - 0.14 12.1 1.5 0.37 10.7 1.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain GATA PF00320.22 gi|344211896|ref|YP_004796216.1| - 0.24 10.7 0.1 0.24 10.7 0.1 2.3 3 0 0 3 3 3 0 GATA zinc finger zf-IS66 PF13005.2 gi|344211896|ref|YP_004796216.1| - 0.38 10.7 3.5 5.7 6.9 0.3 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.13 gi|344211896|ref|YP_004796216.1| - 1.4 8.5 4.4 14 5.3 1.0 2.6 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-HYPF PF07503.7 gi|344211896|ref|YP_004796216.1| - 1.5 8.2 6.8 3 7.3 2.3 2.9 2 1 0 2 2 2 0 HypF finger NUDIX PF00293.23 gi|344211897|ref|YP_004796217.1| - 7.1e-14 51.6 0.6 8.7e-14 51.3 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain KH_3 PF13014.1 gi|344211897|ref|YP_004796217.1| - 0.12 12.0 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 KH domain THF_DHG_CYH_C PF02882.14 gi|344211898|ref|YP_004796218.1| - 4.1e-67 224.2 1.6 5.6e-67 223.8 1.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|344211898|ref|YP_004796218.1| - 4.7e-36 123.3 0.8 7.5e-36 122.7 0.6 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Pterin_bind PF00809.17 gi|344211898|ref|YP_004796218.1| - 0.11 11.8 1.1 2 7.7 0.1 2.2 2 0 0 2 2 2 0 Pterin binding enzyme PemK PF02452.12 gi|344211899|ref|YP_004796219.1| - 0.035 14.3 0.0 0.064 13.4 0.0 1.4 1 0 0 1 1 1 0 PemK-like protein SHMT PF00464.14 gi|344211900|ref|YP_004796220.1| - 2.3e-152 507.0 0.0 2.7e-152 506.7 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|344211900|ref|YP_004796220.1| - 6.2e-08 31.9 0.0 1.2e-07 30.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|344211900|ref|YP_004796220.1| - 0.00023 20.4 0.0 0.0055 15.8 0.0 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase Trypsin_2 PF13365.1 gi|344211900|ref|YP_004796220.1| - 0.042 13.8 0.1 0.062 13.2 0.1 1.5 1 1 0 1 1 1 0 Trypsin-like peptidase domain DegT_DnrJ_EryC1 PF01041.12 gi|344211900|ref|YP_004796220.1| - 0.098 11.6 0.4 0.14 11.1 0.3 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CHAT PF12770.2 gi|344211901|ref|YP_004796221.1| - 0.00059 19.0 0.3 0.0038 16.4 0.2 2.1 1 1 0 1 1 1 1 CHAT domain DUF876 PF05936.7 gi|344211902|ref|YP_004796222.1| - 0.0062 15.0 0.3 0.017 13.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF876) YcaO PF02624.11 gi|344211903|ref|YP_004796223.1| - 8.4e-61 206.2 8.7 1.1e-60 205.8 6.0 1.2 1 0 0 1 1 1 1 YcaO-like family DUF63 PF01889.12 gi|344211904|ref|YP_004796224.1| - 1.4e-34 120.4 13.4 1.8e-34 120.0 8.0 2.1 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Phage_Coat_Gp8 PF05371.7 gi|344211904|ref|YP_004796224.1| - 0.013 15.0 0.2 0.038 13.5 0.1 1.8 1 0 0 1 1 1 0 Phage major coat protein, Gp8 Inositol_P PF00459.20 gi|344211905|ref|YP_004796225.1| - 2e-53 181.4 0.4 2.3e-53 181.2 0.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family BMFP PF04380.8 gi|344211905|ref|YP_004796225.1| - 0.071 13.2 0.4 0.15 12.1 0.3 1.5 1 0 0 1 1 1 0 Membrane fusogenic activity Glycos_transf_2 PF00535.21 gi|344211908|ref|YP_004796228.1| - 1.1e-22 80.4 0.0 1.6e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344211908|ref|YP_004796228.1| - 5.9e-09 36.0 0.0 8.3e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|344211908|ref|YP_004796228.1| - 0.11 11.5 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Peptidase_M64 PF09471.5 gi|344211909|ref|YP_004796229.1| - 0.0022 17.7 0.5 0.0032 17.1 0.3 1.3 1 0 0 1 1 1 1 IgA Peptidase M64 Reprolysin_3 PF13582.1 gi|344211909|ref|YP_004796229.1| - 0.0072 16.8 1.6 0.015 15.7 0.6 2.0 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|344211909|ref|YP_004796229.1| - 0.018 15.1 0.3 0.027 14.5 0.2 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|344211909|ref|YP_004796229.1| - 0.029 13.2 0.2 0.037 12.8 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_4 PF13583.1 gi|344211909|ref|YP_004796229.1| - 0.095 12.2 1.1 0.14 11.7 0.8 1.4 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|344211909|ref|YP_004796229.1| - 0.11 10.9 0.0 0.18 10.2 0.0 1.3 1 0 0 1 1 1 0 Putative peptidase family PsbR PF04725.7 gi|344211909|ref|YP_004796229.1| - 2.3 8.2 5.2 0.5 10.3 0.2 2.3 3 0 0 3 3 3 0 Photosystem II 10 kDa polypeptide PsbR DUF58 PF01882.13 gi|344211910|ref|YP_004796230.1| - 1.6e-19 69.8 0.1 4e-19 68.5 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|344211913|ref|YP_004796233.1| - 5.1e-61 204.0 0.4 7.7e-61 203.4 0.3 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344211913|ref|YP_004796233.1| - 5.7e-18 64.9 0.0 6e-17 61.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|344211913|ref|YP_004796233.1| - 4.4e-12 45.4 0.2 1.7e-10 40.2 0.1 2.2 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|344211913|ref|YP_004796233.1| - 9.3e-08 31.7 0.1 1.1e-06 28.2 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|344211913|ref|YP_004796233.1| - 5.2e-06 25.7 0.2 0.097 11.8 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|344211913|ref|YP_004796233.1| - 1.4e-05 24.2 0.3 5.1e-05 22.4 0.2 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|344211913|ref|YP_004796233.1| - 3.8e-05 23.8 0.0 9.8e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|344211913|ref|YP_004796233.1| - 0.0047 17.7 0.0 0.01 16.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF4350 PF14258.1 gi|344211914|ref|YP_004796234.1| - 3e-08 33.7 1.6 6e-08 32.7 0.3 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|344211914|ref|YP_004796234.1| - 0.0017 17.8 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Glyco_hydro_42M PF08532.5 gi|344211914|ref|YP_004796234.1| - 0.017 14.3 0.0 2.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Beta-galactosidase trimerisation domain EIIC-GAT PF03611.9 gi|344211915|ref|YP_004796235.1| - 0.04 12.6 0.3 0.05 12.3 0.2 1.1 1 0 0 1 1 1 0 PTS system sugar-specific permease component TrbC PF04956.8 gi|344211915|ref|YP_004796235.1| - 0.47 10.4 3.8 0.59 10.1 1.3 1.9 1 1 1 2 2 2 0 TrbC/VIRB2 family DUF4131 PF13567.1 gi|344211915|ref|YP_004796235.1| - 4.7 6.5 8.3 7 6.0 5.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3040 PF11239.3 gi|344211915|ref|YP_004796235.1| - 5.6 7.0 8.2 1.8 8.6 2.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) FtsX PF02687.16 gi|344211916|ref|YP_004796236.1| - 5.8e-18 64.8 39.3 1.5e-11 44.1 7.2 3.5 4 0 0 4 4 4 2 FtsX-like permease family CARDB PF07705.6 gi|344211916|ref|YP_004796236.1| - 0.00024 21.1 5.4 0.0012 18.8 1.0 3.3 3 0 0 3 3 3 1 CARDB ABC_tran PF00005.22 gi|344211917|ref|YP_004796237.1| - 1.9e-30 105.9 0.0 2.8e-30 105.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344211917|ref|YP_004796237.1| - 2.8e-08 34.0 0.1 0.00024 21.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344211917|ref|YP_004796237.1| - 0.00042 19.6 0.1 0.01 15.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344211917|ref|YP_004796237.1| - 0.00057 19.3 0.1 0.001 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344211917|ref|YP_004796237.1| - 0.00092 19.2 1.6 0.0022 18.0 1.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|344211917|ref|YP_004796237.1| - 0.0015 18.4 0.1 0.015 15.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|344211917|ref|YP_004796237.1| - 0.0065 16.6 0.1 0.13 12.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344211917|ref|YP_004796237.1| - 0.0072 15.5 0.1 0.01 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|344211917|ref|YP_004796237.1| - 0.023 14.2 0.1 0.092 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|344211917|ref|YP_004796237.1| - 0.035 13.8 0.2 0.26 11.0 0.0 2.4 3 0 0 3 3 3 0 Part of AAA domain AAA_10 PF12846.2 gi|344211917|ref|YP_004796237.1| - 0.087 12.2 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|344211917|ref|YP_004796237.1| - 0.12 12.1 0.3 0.34 10.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|344211917|ref|YP_004796237.1| - 0.18 12.6 0.2 0.28 12.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain YfhO PF09586.5 gi|344211918|ref|YP_004796238.1| - 0.00014 20.0 0.1 0.023 12.7 0.1 2.1 1 1 0 2 2 2 2 Bacterial membrane protein YfhO DUF998 PF06197.8 gi|344211918|ref|YP_004796238.1| - 0.00034 19.9 10.9 0.00034 19.9 7.5 5.2 1 1 4 5 5 5 2 Protein of unknown function (DUF998) DUF4129 PF13559.1 gi|344211919|ref|YP_004796239.1| - 0.00052 19.9 1.1 0.00052 19.9 0.8 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4129) Kinase-like PF14531.1 gi|344211919|ref|YP_004796239.1| - 0.0029 16.6 0.0 0.0053 15.7 0.0 1.4 1 0 0 1 1 1 1 Kinase-like DUF1616 PF07760.6 gi|344211920|ref|YP_004796240.1| - 3.8e-105 351.1 0.0 4.3e-105 350.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF457 PF04307.9 gi|344211921|ref|YP_004796241.1| - 4e-09 36.0 9.2 4.9e-09 35.7 6.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) A2L_zn_ribbon PF08792.5 gi|344211922|ref|YP_004796242.1| - 3.5e-05 23.1 1.3 4.3e-05 22.8 0.9 1.1 1 0 0 1 1 1 1 A2L zinc ribbon domain DZR PF12773.2 gi|344211922|ref|YP_004796242.1| - 0.0037 17.0 0.4 0.0049 16.6 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|344211922|ref|YP_004796242.1| - 0.0044 16.7 1.0 0.0055 16.4 0.7 1.1 1 0 0 1 1 1 1 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|344211922|ref|YP_004796242.1| - 0.0048 16.1 2.4 0.0065 15.7 1.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-HIT PF04438.11 gi|344211922|ref|YP_004796242.1| - 0.014 15.0 1.3 1 9.0 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|344211922|ref|YP_004796242.1| - 0.046 13.6 0.8 5.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|344211922|ref|YP_004796242.1| - 0.059 12.8 2.6 0.16 11.4 1.9 1.6 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|344211922|ref|YP_004796242.1| - 0.069 12.8 0.5 0.074 12.7 0.3 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Gin PF10764.4 gi|344211922|ref|YP_004796242.1| - 0.07 12.8 1.0 0.093 12.4 0.7 1.2 1 0 0 1 1 1 0 Inhibitor of sigma-G Gin NinF PF05810.7 gi|344211922|ref|YP_004796242.1| - 0.074 12.8 0.4 0.085 12.6 0.3 1.1 1 0 0 1 1 1 0 NinF protein FYVE_2 PF02318.11 gi|344211922|ref|YP_004796242.1| - 0.093 12.6 0.1 0.095 12.5 0.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger DUF4568 PF15132.1 gi|344211922|ref|YP_004796242.1| - 0.14 11.3 0.3 0.13 11.4 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4568) Auto_anti-p27 PF06677.7 gi|344211922|ref|YP_004796242.1| - 0.31 10.8 1.4 0.39 10.5 1.0 1.1 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cas_CXXC_CXXC PF09706.5 gi|344211922|ref|YP_004796242.1| - 0.32 11.2 2.8 1.1 9.5 0.1 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) Ribosomal_S27e PF01667.12 gi|344211922|ref|YP_004796242.1| - 0.99 8.9 3.5 2.1 7.9 2.4 1.6 1 1 0 1 1 1 0 Ribosomal protein S27 C-term_anchor PF13461.1 gi|344211924|ref|YP_004796244.1| - 0.0048 17.3 1.7 0.049 14.1 0.2 2.9 2 0 0 2 2 2 1 Cell-wall surface anchor repeat DUF309 PF03745.9 gi|344211925|ref|YP_004796245.1| - 3.2e-14 52.1 0.1 4.8e-14 51.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.9 gi|344211926|ref|YP_004796246.1| - 6.3e-15 54.8 0.0 7.3e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family tRNA_edit PF04073.10 gi|344211927|ref|YP_004796247.1| - 6.8e-32 109.8 0.4 8.1e-32 109.6 0.3 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain DUF4157 PF13699.1 gi|344211927|ref|YP_004796247.1| - 0.22 11.7 1.8 0.56 10.3 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4157) DUF457 PF04307.9 gi|344211930|ref|YP_004796250.1| - 9.6e-14 51.0 8.2 1.2e-13 50.6 5.7 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF217 PF02697.9 gi|344211931|ref|YP_004796251.1| - 1.2e-11 44.6 0.7 1.5e-11 44.4 0.5 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 SeqA PF03925.8 gi|344211931|ref|YP_004796251.1| - 0.11 12.2 0.7 0.12 12.0 0.5 1.1 1 0 0 1 1 1 0 SeqA protein OrfB_Zn_ribbon PF07282.6 gi|344211932|ref|YP_004796252.1| - 4.4e-20 71.1 0.4 7.4e-20 70.3 0.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|344211932|ref|YP_004796252.1| - 0.00023 20.6 0.3 0.00042 19.7 0.2 1.5 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.2 gi|344211932|ref|YP_004796252.1| - 0.0022 17.7 4.5 0.0041 16.8 3.1 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-Mss51 PF13824.1 gi|344211932|ref|YP_004796252.1| - 0.094 12.5 1.5 0.2 11.5 1.1 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.14 gi|344211932|ref|YP_004796252.1| - 0.17 11.6 0.5 0.41 10.3 0.3 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|344211932|ref|YP_004796252.1| - 2.7 7.7 5.6 1.2 8.9 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Y1_Tnp PF01797.11 gi|344211933|ref|YP_004796253.1| - 1.8e-37 127.8 0.2 2e-37 127.7 0.1 1.0 1 0 0 1 1 1 1 Transposase IS200 like Cdc6_C PF09079.6 gi|344211934|ref|YP_004796254.1| - 7.3e-15 54.4 0.0 2e-14 53.0 0.0 1.7 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|344211934|ref|YP_004796254.1| - 2.1e-14 53.9 1.4 6.3e-14 52.3 0.1 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344211934|ref|YP_004796254.1| - 3.2e-11 43.4 0.1 9.6e-11 41.9 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|344211934|ref|YP_004796254.1| - 8.4e-07 29.2 0.0 9.1e-06 25.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|344211934|ref|YP_004796254.1| - 0.00097 19.0 0.1 0.0021 18.0 0.0 1.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|344211934|ref|YP_004796254.1| - 0.005 16.5 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activat PF00158.21 gi|344211934|ref|YP_004796254.1| - 0.0081 15.6 0.0 0.019 14.4 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain PhoH PF02562.11 gi|344211934|ref|YP_004796254.1| - 0.031 13.4 0.0 0.68 9.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_17 PF13207.1 gi|344211934|ref|YP_004796254.1| - 0.033 14.9 0.8 0.13 13.0 0.6 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|344211934|ref|YP_004796254.1| - 0.055 13.7 0.0 0.14 12.4 0.0 1.7 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.1 gi|344211934|ref|YP_004796254.1| - 0.058 13.7 0.2 0.16 12.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|344211934|ref|YP_004796254.1| - 0.1 12.3 0.9 1.8 8.3 0.2 2.6 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|344211934|ref|YP_004796254.1| - 0.12 12.5 0.1 2 8.6 0.0 2.4 1 1 0 2 2 2 0 RNA helicase PCP_red PF08369.5 gi|344211934|ref|YP_004796254.1| - 0.15 11.9 0.2 0.63 9.9 0.1 2.3 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit KaiC PF06745.8 gi|344211934|ref|YP_004796254.1| - 0.25 10.4 0.8 7.3 5.6 0.1 2.5 2 1 0 2 2 2 0 KaiC Glycos_transf_1 PF00534.15 gi|344211935|ref|YP_004796255.1| - 7.4e-31 106.8 0.0 9.6e-31 106.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344211935|ref|YP_004796255.1| - 4.2e-16 59.3 0.0 7.2e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344211935|ref|YP_004796255.1| - 0.00011 21.9 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|344211935|ref|YP_004796255.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344211935|ref|YP_004796255.1| - 0.025 14.7 0.2 0.44 10.6 0.0 2.6 3 0 0 3 3 3 0 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|344211936|ref|YP_004796256.1| - 4.1e-36 123.9 0.0 7.2e-36 123.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344211936|ref|YP_004796256.1| - 1.5e-19 70.5 0.0 3.7e-18 65.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344211936|ref|YP_004796256.1| - 2e-18 67.0 0.0 4.1e-18 66.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344211936|ref|YP_004796256.1| - 8.8e-18 64.6 0.0 1.5e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|344211936|ref|YP_004796256.1| - 2.2e-07 30.7 0.0 3.9e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|344211936|ref|YP_004796256.1| - 1.1e-06 28.8 0.0 7.4e-06 26.1 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3492 PF11997.3 gi|344211936|ref|YP_004796256.1| - 0.0099 15.4 0.7 0.33 10.4 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF3492) Glyco_transf_5 PF08323.6 gi|344211936|ref|YP_004796256.1| - 0.035 13.5 0.2 0.88 9.0 0.0 2.3 1 1 1 2 2 2 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|344211937|ref|YP_004796257.1| - 4.5e-28 97.7 0.0 7e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344211937|ref|YP_004796257.1| - 2.1e-21 76.4 0.0 3.1e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344211937|ref|YP_004796257.1| - 0.0013 18.9 0.0 0.0033 17.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF4337 PF14235.1 gi|344211938|ref|YP_004796258.1| - 4 7.2 4.2 1.5 8.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Polysacc_synt PF01943.12 gi|344211939|ref|YP_004796259.1| - 9.8e-22 77.5 18.9 9.8e-22 77.5 13.1 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|344211939|ref|YP_004796259.1| - 1.7e-15 57.1 15.3 1.7e-15 57.1 10.6 3.7 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|344211939|ref|YP_004796259.1| - 1.3e-12 47.6 21.5 1.3e-12 47.6 14.9 3.2 1 1 2 4 4 4 2 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|344211939|ref|YP_004796259.1| - 0.0004 18.9 16.7 0.0004 18.9 11.6 2.5 1 1 1 2 2 2 1 MviN-like protein Sulfatase PF00884.18 gi|344211940|ref|YP_004796260.1| - 6.8e-14 51.7 0.8 6.9e-06 25.4 0.1 2.1 2 0 0 2 2 2 2 Sulfatase Phosphodiest PF01663.17 gi|344211940|ref|YP_004796260.1| - 6.6e-05 22.4 0.2 0.11 11.7 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|344211940|ref|YP_004796260.1| - 0.22 9.8 0.0 0.28 9.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_1 PF00534.15 gi|344211941|ref|YP_004796261.1| - 3.3e-26 91.7 0.0 4.6e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344211941|ref|YP_004796261.1| - 1.7e-13 50.9 0.1 3.3e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344211941|ref|YP_004796261.1| - 3.4e-12 46.4 0.0 1e-11 44.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|344211941|ref|YP_004796261.1| - 8.8e-12 45.3 0.1 4.6e-11 43.0 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferases group 1 ATP-gua_PtransN PF02807.10 gi|344211941|ref|YP_004796261.1| - 0.029 14.5 0.0 0.054 13.6 0.0 1.4 1 0 0 1 1 1 0 ATP:guanido phosphotransferase, N-terminal domain OTCace_N PF02729.16 gi|344211941|ref|YP_004796261.1| - 0.066 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAMPs PF03787.10 gi|344211944|ref|YP_004796264.1| - 0.091 12.5 0.0 0.1 12.4 0.0 1.3 1 1 0 1 1 1 0 RAMP superfamily Nefa_Nip30_N PF10187.4 gi|344211945|ref|YP_004796265.1| - 0.014 15.5 0.2 0.015 15.5 0.1 1.1 1 0 0 1 1 1 0 N-terminal domain of NEFA-interacting nuclear protein NIP30 EzrA PF06160.7 gi|344211945|ref|YP_004796265.1| - 0.053 11.7 0.2 0.061 11.4 0.1 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Glycos_transf_1 PF00534.15 gi|344211947|ref|YP_004796267.1| - 2.2e-15 56.5 0.0 3.1e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344211947|ref|YP_004796267.1| - 1.8e-09 37.8 0.0 2.8e-09 37.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344211947|ref|YP_004796267.1| - 0.034 13.8 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 COOH-NH2_lig PF14395.1 gi|344211948|ref|YP_004796268.1| - 0.12 11.3 0.1 0.14 11.2 0.1 1.0 1 0 0 1 1 1 0 Phage phiEco32-like COOH.NH2 ligase-type 2 PrkA PF06798.7 gi|344211950|ref|YP_004796270.1| - 5.2e-78 261.8 8.7 5.2e-78 261.8 6.1 2.7 3 0 0 3 3 3 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|344211950|ref|YP_004796270.1| - 3.4e-65 220.0 0.0 5.2e-65 219.4 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain CLTH PF10607.4 gi|344211950|ref|YP_004796270.1| - 0.042 13.5 0.9 0.56 9.8 0.2 2.5 3 0 0 3 3 3 0 CTLH/CRA C-terminal to LisH motif domain AAA_PrkA PF08298.6 gi|344211951|ref|YP_004796271.1| - 1.5e-18 66.6 0.0 2.9e-15 55.8 0.0 3.0 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|344211951|ref|YP_004796271.1| - 3.3e-07 29.8 0.5 8.6e-07 28.4 0.4 1.8 1 1 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_22 PF13401.1 gi|344211951|ref|YP_004796271.1| - 0.15 12.2 0.0 0.74 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF444 PF04285.7 gi|344211952|ref|YP_004796272.1| - 2.9e-105 352.3 1.2 3.2e-105 352.2 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) HTH_17 PF12728.2 gi|344211952|ref|YP_004796272.1| - 0.017 15.3 0.2 0.096 12.9 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain SpoVR PF04293.8 gi|344211953|ref|YP_004796273.1| - 3e-74 249.9 9.4 8.7e-58 195.6 1.3 3.7 3 1 0 3 3 3 3 SpoVR like protein LAGLIDADG_3 PF14528.1 gi|344211953|ref|YP_004796273.1| - 4.2e-24 84.5 0.2 2.2e-14 53.4 0.0 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.1 gi|344211953|ref|YP_004796273.1| - 1.3e-18 66.9 0.0 2.4e-17 62.8 0.0 2.2 1 1 0 1 1 1 1 Intein splicing domain LacI PF00356.16 gi|344211953|ref|YP_004796273.1| - 0.0077 15.8 0.1 0.019 14.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_Tnp_ISL3 PF13542.1 gi|344211953|ref|YP_004796273.1| - 0.0082 15.3 0.1 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 LAGLIDADG_2 PF03161.8 gi|344211953|ref|YP_004796273.1| - 0.09 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 LAGLIDADG DNA endonuclease family UPF0047 PF01894.12 gi|344211954|ref|YP_004796274.1| - 3.2e-35 120.4 0.0 3.6e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AMP-binding PF00501.23 gi|344211955|ref|YP_004796275.1| - 7.9e-89 297.9 0.1 9.4e-89 297.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme HA PF03457.9 gi|344211955|ref|YP_004796275.1| - 0.052 13.6 0.0 0.18 11.9 0.0 1.9 1 0 0 1 1 1 0 Helicase associated domain DUF2116 PF09889.4 gi|344211957|ref|YP_004796277.1| - 0.38 10.5 3.3 5.7 6.8 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NTP_transferase PF00483.18 gi|344211958|ref|YP_004796278.1| - 3.3e-39 134.6 0.0 4.6e-39 134.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|344211958|ref|YP_004796278.1| - 1e-15 58.2 0.2 1.5e-15 57.6 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|344211958|ref|YP_004796278.1| - 2.1e-08 33.2 12.8 0.00074 18.9 0.1 4.4 2 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|344211958|ref|YP_004796278.1| - 0.00097 18.7 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF187 PF02638.10 gi|344211958|ref|YP_004796278.1| - 0.1 11.4 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 Hexapep_2 PF14602.1 gi|344211958|ref|YP_004796278.1| - 0.16 11.5 9.3 0.83 9.2 0.4 3.6 4 0 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase DUF4352 PF11611.3 gi|344211959|ref|YP_004796279.1| - 1.3e-09 38.2 0.3 6.9e-07 29.4 0.1 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF4352) DUF11 PF01345.13 gi|344211959|ref|YP_004796279.1| - 0.015 15.3 1.0 0.06 13.4 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function DUF11 CARDB PF07705.6 gi|344211959|ref|YP_004796279.1| - 0.016 15.2 0.3 0.95 9.5 0.1 3.0 2 2 1 3 3 3 0 CARDB Arch_ATPase PF01637.13 gi|344211960|ref|YP_004796280.1| - 6.8e-35 120.8 0.0 1.2e-34 120.0 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|344211960|ref|YP_004796280.1| - 2.2e-17 63.0 0.0 5.1e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.1 gi|344211960|ref|YP_004796280.1| - 2.3e-07 31.0 0.0 4.4e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|344211960|ref|YP_004796280.1| - 1.3e-05 25.0 0.0 2.4e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_5 PF01022.15 gi|344211960|ref|YP_004796280.1| - 7.5e-05 22.3 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|344211960|ref|YP_004796280.1| - 0.00019 20.9 0.1 0.00055 19.4 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_16 PF13191.1 gi|344211960|ref|YP_004796280.1| - 0.0002 21.4 0.0 0.00069 19.6 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.2 gi|344211960|ref|YP_004796280.1| - 0.00025 20.6 0.1 0.00071 19.1 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344211960|ref|YP_004796280.1| - 0.0055 16.4 0.1 0.019 14.7 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344211960|ref|YP_004796280.1| - 0.013 14.8 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|344211960|ref|YP_004796280.1| - 0.048 13.9 0.0 0.16 12.3 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain RNA12 PF10443.4 gi|344211960|ref|YP_004796280.1| - 0.052 12.0 0.0 0.69 8.3 0.0 2.0 2 0 0 2 2 2 0 RNA12 protein TrmB PF01978.14 gi|344211960|ref|YP_004796280.1| - 0.068 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB 3HCDH_N PF02737.13 gi|344211961|ref|YP_004796281.1| - 3.2e-65 219.1 0.3 5.3e-65 218.4 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|344211961|ref|YP_004796281.1| - 2.1e-63 213.6 0.0 3.5e-63 213.0 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|344211961|ref|YP_004796281.1| - 1.4e-47 160.0 1.5 6.4e-31 106.6 0.0 3.6 3 0 0 3 3 3 3 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|344211961|ref|YP_004796281.1| - 1.4e-07 31.4 0.0 2.7e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|344211961|ref|YP_004796281.1| - 3e-06 27.1 0.7 1e-05 25.4 0.2 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|344211961|ref|YP_004796281.1| - 0.0036 17.6 4.4 0.047 14.1 3.0 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ECH_C PF13766.1 gi|344211961|ref|YP_004796281.1| - 0.021 14.9 0.0 0.058 13.5 0.0 1.7 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region NAD_binding_3 PF03447.11 gi|344211961|ref|YP_004796281.1| - 0.074 13.4 0.3 0.21 11.9 0.2 1.8 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|344211962|ref|YP_004796282.1| - 3.9e-51 173.0 3.8 7.1e-51 172.2 2.6 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344211962|ref|YP_004796282.1| - 1.1e-32 112.8 0.7 3.7e-32 111.2 0.5 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|344211962|ref|YP_004796282.1| - 1.1e-22 80.7 5.8 1.7e-22 80.0 4.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344211962|ref|YP_004796282.1| - 2.2e-20 71.9 0.1 4.7e-20 70.8 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Sec8_exocyst PF04048.9 gi|344211962|ref|YP_004796282.1| - 0.032 13.8 0.2 0.083 12.5 0.0 1.7 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Hexapep PF00132.19 gi|344211964|ref|YP_004796284.1| - 2.4e-13 48.9 8.3 1.3e-07 30.7 1.2 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344211964|ref|YP_004796284.1| - 3.9e-05 23.1 9.1 0.0034 16.9 1.4 2.5 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|344211964|ref|YP_004796284.1| - 0.015 15.5 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal Lamprin PF06403.6 gi|344211964|ref|YP_004796284.1| - 0.079 12.6 1.4 0.11 12.2 1.0 1.2 1 0 0 1 1 1 0 Lamprin HhH-GPD PF00730.20 gi|344211965|ref|YP_004796285.1| - 3.3e-10 40.2 0.0 4.6e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|344211965|ref|YP_004796285.1| - 0.0078 16.3 0.1 0.014 15.5 0.1 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix domain HTH_33 PF13592.1 gi|344211965|ref|YP_004796285.1| - 0.0085 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Spc7 PF08317.6 gi|344211966|ref|YP_004796286.1| - 0.063 11.9 0.0 0.071 11.7 0.0 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Phage_integrase PF00589.17 gi|344211967|ref|YP_004796287.1| - 6.9e-39 133.2 0.0 1.2e-38 132.5 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|344211967|ref|YP_004796287.1| - 4.5e-08 33.3 0.0 1.7e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|344211967|ref|YP_004796287.1| - 0.00017 21.6 0.0 0.00045 20.3 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HhH-GPD PF00730.20 gi|344211971|ref|YP_004796291.1| - 0.02 15.1 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein RimK PF08443.6 gi|344211972|ref|YP_004796292.1| - 4.2e-33 114.4 0.0 7.8e-33 113.5 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|344211972|ref|YP_004796292.1| - 2.5e-12 46.9 0.0 4.9e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Zn_protease PF05618.6 gi|344211972|ref|YP_004796292.1| - 2e-10 40.4 0.1 2.1e-07 30.7 0.0 2.5 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|344211972|ref|YP_004796292.1| - 2.5e-09 36.5 0.0 5.3e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|344211972|ref|YP_004796292.1| - 2.6e-09 37.0 0.0 4.9e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|344211972|ref|YP_004796292.1| - 0.00013 20.7 0.0 0.013 14.2 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Asp_protease_2 PF13650.1 gi|344211972|ref|YP_004796292.1| - 0.059 13.8 1.0 0.22 12.0 0.7 2.0 1 0 0 1 1 1 0 Aspartyl protease AstE_AspA PF04952.9 gi|344211973|ref|YP_004796293.1| - 7.3e-65 218.7 0.0 8.4e-65 218.5 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.17 gi|344211974|ref|YP_004796294.1| - 2e-23 82.5 4.0 2.2e-23 82.3 2.8 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|344211974|ref|YP_004796294.1| - 0.025 14.6 3.6 0.039 14.0 2.5 1.5 1 1 0 1 1 1 0 Ferric reductase like transmembrane component PgaD PF13994.1 gi|344211974|ref|YP_004796294.1| - 0.21 11.0 2.6 0.3 10.5 1.8 1.3 1 0 0 1 1 1 0 PgaD-like protein Sdh_cyt PF01127.17 gi|344211975|ref|YP_004796295.1| - 2.7e-12 46.5 5.5 3.2e-12 46.3 3.8 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4282 PF14110.1 gi|344211975|ref|YP_004796295.1| - 3.9 7.7 7.1 0.73 10.0 0.7 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4282) Fer2_3 PF13085.1 gi|344211976|ref|YP_004796296.1| - 5.8e-33 113.0 0.1 4.4e-32 110.1 0.0 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|344211976|ref|YP_004796296.1| - 1.1e-11 44.5 4.3 3.1e-11 43.1 3.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344211976|ref|YP_004796296.1| - 1.5e-06 28.4 3.1 1.9e-06 28.1 0.5 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|344211976|ref|YP_004796296.1| - 4.7e-06 26.8 4.5 1.3e-05 25.3 3.1 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344211976|ref|YP_004796296.1| - 7.8e-06 26.0 2.4 7.8e-06 26.0 1.7 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344211976|ref|YP_004796296.1| - 5e-05 23.0 7.0 0.00015 21.4 4.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|344211976|ref|YP_004796296.1| - 0.00076 19.8 13.6 0.0094 16.3 0.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344211976|ref|YP_004796296.1| - 0.011 15.6 1.1 0.011 15.6 0.8 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|344211976|ref|YP_004796296.1| - 0.015 15.9 11.6 0.064 13.9 1.1 3.4 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|344211976|ref|YP_004796296.1| - 0.033 13.7 6.8 0.6 9.7 0.3 2.8 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|344211976|ref|YP_004796296.1| - 0.56 10.1 9.9 0.61 10.0 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|344211976|ref|YP_004796296.1| - 1.6 8.4 9.8 5.4 6.7 2.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|344211976|ref|YP_004796296.1| - 7.7 7.1 13.2 1 9.8 1.1 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain PAS_3 PF08447.6 gi|344211977|ref|YP_004796297.1| - 3.2e-33 113.6 1.1 1.6e-15 56.9 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|344211977|ref|YP_004796297.1| - 2.9e-22 79.0 0.7 2.3e-10 40.7 0.0 2.7 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|344211977|ref|YP_004796297.1| - 3e-16 59.1 0.3 3.1e-07 30.1 0.0 2.7 2 1 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|344211977|ref|YP_004796297.1| - 8.4e-15 54.4 0.0 1.6e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344211977|ref|YP_004796297.1| - 6.5e-14 51.8 3.4 8.8e-08 32.1 0.2 2.6 2 0 0 2 2 2 2 PAS fold PAS_11 PF14598.1 gi|344211977|ref|YP_004796297.1| - 1.8e-12 47.2 0.0 1.7e-06 27.9 0.0 2.3 2 0 0 2 2 2 2 PAS domain HisKA PF00512.20 gi|344211977|ref|YP_004796297.1| - 1.8e-10 40.6 0.4 4.5e-10 39.3 0.3 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|344211977|ref|YP_004796297.1| - 2.7e-07 30.2 0.2 0.015 15.1 0.0 3.1 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|344211977|ref|YP_004796297.1| - 8.5e-06 25.5 0.3 2.2e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain IncA PF04156.9 gi|344211977|ref|YP_004796297.1| - 0.78 9.3 2.5 1.2 8.7 1.7 1.2 1 0 0 1 1 1 0 IncA protein FAD_binding_2 PF00890.19 gi|344211978|ref|YP_004796298.1| - 1.6e-120 402.7 6.9 1.6e-120 402.7 4.8 1.4 2 0 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|344211978|ref|YP_004796298.1| - 5.2e-39 133.0 1.0 8.6e-39 132.3 0.7 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|344211978|ref|YP_004796298.1| - 4.2e-07 29.1 5.2 1.2e-05 24.3 3.6 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344211978|ref|YP_004796298.1| - 3.1e-05 23.9 14.0 0.0019 18.0 7.9 3.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|344211978|ref|YP_004796298.1| - 4.3e-05 22.1 0.0 9.5e-05 21.0 0.0 1.6 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|344211978|ref|YP_004796298.1| - 0.00014 20.8 3.8 0.00042 19.2 2.5 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|344211978|ref|YP_004796298.1| - 0.0007 18.7 4.6 0.0007 18.7 3.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344211978|ref|YP_004796298.1| - 0.0018 17.4 2.2 0.011 14.7 0.3 2.7 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.14 gi|344211978|ref|YP_004796298.1| - 0.062 12.3 4.0 0.028 13.4 0.6 1.9 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.22 gi|344211978|ref|YP_004796298.1| - 0.15 12.5 0.9 0.53 10.7 0.6 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Cupin_2 PF07883.6 gi|344211979|ref|YP_004796299.1| - 3.3e-11 42.5 0.9 4.3e-11 42.1 0.7 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|344211979|ref|YP_004796299.1| - 3.4e-06 26.3 0.1 4.6e-06 25.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|344211979|ref|YP_004796299.1| - 0.00034 20.2 0.1 0.0004 19.9 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_6 PF12852.2 gi|344211979|ref|YP_004796299.1| - 0.0015 18.1 0.1 0.0017 17.9 0.1 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|344211979|ref|YP_004796299.1| - 0.0053 16.4 0.0 0.0064 16.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain DUF1498 PF07385.7 gi|344211979|ref|YP_004796299.1| - 0.026 13.6 0.0 0.03 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1498) EutQ PF06249.7 gi|344211979|ref|YP_004796299.1| - 0.034 13.6 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ DUF2917 PF11142.3 gi|344211979|ref|YP_004796299.1| - 0.036 13.2 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) KduI PF04962.7 gi|344211979|ref|YP_004796299.1| - 0.052 12.6 0.1 0.096 11.7 0.1 1.6 1 1 0 1 1 1 0 KduI/IolB family Pirin_C PF05726.8 gi|344211979|ref|YP_004796299.1| - 0.076 13.0 0.0 0.087 12.8 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain MannoseP_isomer PF01050.13 gi|344211979|ref|YP_004796299.1| - 0.11 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Prok-RING_1 PF14446.1 gi|344211980|ref|YP_004796300.1| - 0.0054 16.4 1.3 0.0087 15.7 0.9 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|344211980|ref|YP_004796300.1| - 0.23 11.5 1.6 0.28 11.2 0.4 1.7 2 1 0 2 2 2 0 zinc-finger DBI_PRT PF02277.12 gi|344211981|ref|YP_004796301.1| - 6.6e-16 58.3 2.5 1.2e-15 57.4 1.7 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase GATase_3 PF07685.9 gi|344211982|ref|YP_004796302.1| - 1e-30 106.4 0.4 1.4e-30 105.9 0.3 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|344211982|ref|YP_004796302.1| - 5.2e-17 61.8 0.1 2.5e-16 59.6 0.1 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|344211982|ref|YP_004796302.1| - 1.8e-07 30.9 0.3 0.00027 20.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain SNO PF01174.14 gi|344211982|ref|YP_004796302.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family Peptidase_S51 PF03575.12 gi|344211982|ref|YP_004796302.1| - 0.016 14.9 0.1 0.087 12.5 0.0 2.2 3 0 0 3 3 3 0 Peptidase family S51 SNF2_N PF00176.18 gi|344211982|ref|YP_004796302.1| - 0.13 11.0 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 SNF2 family N-terminal domain DisA_N PF02457.11 gi|344211983|ref|YP_004796303.1| - 9.5e-26 89.3 0.0 1.6e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.13 gi|344211984|ref|YP_004796304.1| - 1.2e-19 70.4 1.7 2.6e-19 69.3 1.2 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|344211984|ref|YP_004796304.1| - 0.0005 19.6 5.6 0.0034 17.0 0.1 3.0 3 0 0 3 3 3 2 Conserved TM helix Fimbrial_PilY2 PF14481.1 gi|344211984|ref|YP_004796304.1| - 0.022 14.1 0.0 0.05 13.0 0.0 1.6 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 Hexapep PF00132.19 gi|344211985|ref|YP_004796305.1| - 3.7e-09 35.6 5.6 8.1e-09 34.6 0.5 2.7 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344211985|ref|YP_004796305.1| - 1.7e-07 30.6 2.9 1.6e-06 27.5 0.5 2.8 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase GARS_A PF01071.14 gi|344211986|ref|YP_004796306.1| - 1.1e-52 178.4 0.0 2.4e-52 177.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|344211986|ref|YP_004796306.1| - 1.2e-24 86.6 0.1 3.9e-24 85.0 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|344211986|ref|YP_004796306.1| - 3.3e-20 72.5 0.0 7.8e-20 71.3 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_C PF02843.11 gi|344211986|ref|YP_004796306.1| - 2.5e-15 56.4 3.6 3.7e-14 52.6 0.8 3.0 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|344211986|ref|YP_004796306.1| - 1.2e-07 30.8 0.0 4.2e-07 29.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|344211986|ref|YP_004796306.1| - 4.3e-06 26.6 0.0 7.9e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|344211986|ref|YP_004796306.1| - 0.024 13.9 0.0 0.041 13.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1970 PF09301.5 gi|344211987|ref|YP_004796307.1| - 0.014 15.3 0.1 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1970) MMPL PF03176.10 gi|344211987|ref|YP_004796307.1| - 2.1 6.9 6.9 2.9 6.5 4.8 1.1 1 0 0 1 1 1 0 MMPL family Thioredox_DsbH PF03190.10 gi|344211988|ref|YP_004796308.1| - 9.7e-73 243.2 0.1 1.7e-72 242.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|344211988|ref|YP_004796308.1| - 1.6e-11 44.0 0.1 4.6e-11 42.5 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|344211988|ref|YP_004796308.1| - 0.0002 20.5 0.3 0.038 13.0 0.0 2.7 2 1 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.1 gi|344211988|ref|YP_004796308.1| - 0.003 17.7 0.0 0.0077 16.4 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|344211989|ref|YP_004796309.1| - 0.00068 19.2 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|344211989|ref|YP_004796309.1| - 0.1 12.1 0.1 0.19 11.2 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin AhpC-TSA PF00578.16 gi|344211989|ref|YP_004796309.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family Glyco_hydro_3 PF00933.16 gi|344211990|ref|YP_004796310.1| - 4.1e-84 282.0 0.0 6e-84 281.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|344211990|ref|YP_004796310.1| - 3.1e-61 206.8 2.8 5.3e-61 206.0 0.2 2.3 3 0 0 3 3 3 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|344211990|ref|YP_004796310.1| - 2.4e-21 75.4 0.1 5.7e-21 74.2 0.1 1.7 1 0 0 1 1 1 1 Fibronectin type III-like domain HATPase_c PF02518.21 gi|344211991|ref|YP_004796311.1| - 6.7e-18 64.4 0.4 1.6e-17 63.2 0.2 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344211991|ref|YP_004796311.1| - 8.7e-12 44.8 0.6 1.8e-11 43.8 0.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|344211991|ref|YP_004796311.1| - 8.7e-09 35.3 0.1 2.6e-08 33.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|344211991|ref|YP_004796311.1| - 8.5e-07 28.6 0.0 2.9e-06 26.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|344211991|ref|YP_004796311.1| - 6.2e-06 25.9 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|344211991|ref|YP_004796311.1| - 1.3e-05 25.4 0.3 3.6e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|344211991|ref|YP_004796311.1| - 1.8e-05 24.4 0.1 3.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|344211991|ref|YP_004796311.1| - 0.0052 16.4 0.0 0.0092 15.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hemerythrin PF01814.18 gi|344211991|ref|YP_004796311.1| - 0.78 9.9 8.2 2.6 8.2 5.7 1.8 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain AAA_26 PF13500.1 gi|344211993|ref|YP_004796313.1| - 0.025 14.1 0.0 0.088 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Lactamase_B PF00753.22 gi|344211994|ref|YP_004796314.1| - 2e-24 86.3 11.7 2.7e-24 85.8 8.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344211994|ref|YP_004796314.1| - 1.6e-05 24.5 3.6 2.3e-05 24.0 2.5 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|344211994|ref|YP_004796314.1| - 0.014 15.1 3.5 0.017 14.8 2.4 1.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain HalX PF08663.5 gi|344211995|ref|YP_004796315.1| - 8.6e-25 86.5 7.9 8.6e-25 86.5 5.5 2.3 2 1 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|344211995|ref|YP_004796315.1| - 7.9e-20 70.9 0.1 1.4e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 Response regulator receiver domain DUF1241 PF06840.6 gi|344211995|ref|YP_004796315.1| - 0.026 13.7 0.2 0.044 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1241) GAT PF03127.9 gi|344211995|ref|YP_004796315.1| - 0.046 13.7 1.0 0.15 12.0 0.2 1.9 1 1 1 2 2 2 0 GAT domain DUF848 PF05852.6 gi|344211995|ref|YP_004796315.1| - 0.08 12.7 1.6 0.12 12.2 1.1 1.3 1 0 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF4611 PF15387.1 gi|344211995|ref|YP_004796315.1| - 0.27 11.4 2.3 3 8.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) DUF3618 PF12277.3 gi|344211995|ref|YP_004796315.1| - 1.9 8.5 5.5 17 5.5 0.3 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3618) Pup PF05639.6 gi|344211995|ref|YP_004796315.1| - 4.4 7.8 6.5 7.2 7.1 0.0 3.0 3 0 0 3 3 3 0 Pup-like protein TPP_enzyme_N PF02776.13 gi|344211996|ref|YP_004796316.1| - 0.019 14.4 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Thy1 PF02511.10 gi|344211997|ref|YP_004796317.1| - 2.6e-64 216.1 0.0 3e-64 215.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase complementing protein eIF-5_eIF-2B PF01873.12 gi|344211999|ref|YP_004796319.1| - 2.6e-34 117.5 0.0 3.1e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DNA_RNApol_7kD PF03604.8 gi|344211999|ref|YP_004796319.1| - 0.4 10.1 3.3 3.4 7.2 2.4 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|344211999|ref|YP_004796319.1| - 0.84 9.1 2.8 4.2 6.9 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|344212000|ref|YP_004796320.1| - 0.00012 21.7 0.6 0.17 11.6 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|344212000|ref|YP_004796320.1| - 0.0015 18.1 0.6 0.25 11.0 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344212000|ref|YP_004796320.1| - 0.0018 17.8 0.5 0.26 10.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|344212000|ref|YP_004796320.1| - 0.0044 16.7 1.4 0.018 14.7 1.0 1.8 1 1 1 2 2 2 1 zinc-ribbons HypA PF01155.14 gi|344212000|ref|YP_004796320.1| - 0.0049 16.5 0.2 0.005 16.5 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1 PF03811.8 gi|344212000|ref|YP_004796320.1| - 0.01 15.3 0.6 2.6 7.6 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_4 PF14570.1 gi|344212000|ref|YP_004796320.1| - 0.01 15.3 1.6 2.7 7.6 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|344212000|ref|YP_004796320.1| - 0.014 14.6 0.9 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|344212000|ref|YP_004796320.1| - 0.022 14.3 0.9 0.03 13.9 0.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2296 PF10058.4 gi|344212000|ref|YP_004796320.1| - 0.023 14.4 1.1 0.039 13.7 0.8 1.5 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) RNHCP PF12647.2 gi|344212000|ref|YP_004796320.1| - 0.025 14.3 0.7 0.031 14.0 0.5 1.3 1 0 0 1 1 1 0 RNHCP domain NMD3 PF04981.8 gi|344212000|ref|YP_004796320.1| - 0.026 13.6 0.1 0.028 13.5 0.1 1.0 1 0 0 1 1 1 0 NMD3 family DZR PF12773.2 gi|344212000|ref|YP_004796320.1| - 0.028 14.2 2.6 0.066 13.0 1.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|344212000|ref|YP_004796320.1| - 0.029 14.3 1.8 4.6 7.3 0.5 2.2 2 0 0 2 2 2 0 zinc-finger CpXC PF14353.1 gi|344212000|ref|YP_004796320.1| - 0.03 14.3 0.5 1.2 9.1 0.1 2.0 2 0 0 2 2 2 0 CpXC protein Elf1 PF05129.8 gi|344212000|ref|YP_004796320.1| - 0.031 13.9 1.5 0.062 12.9 0.5 1.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Prim_Zn_Ribbon PF08273.7 gi|344212000|ref|YP_004796320.1| - 0.035 14.1 0.3 0.11 12.5 0.0 1.8 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-3CxxC PF13695.1 gi|344212000|ref|YP_004796320.1| - 0.035 14.3 1.7 0.82 9.9 1.2 2.1 1 1 0 1 1 1 0 Zinc-binding domain DUF329 PF03884.9 gi|344212000|ref|YP_004796320.1| - 0.035 13.6 0.9 2.5 7.7 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-ribbon_3 PF13248.1 gi|344212000|ref|YP_004796320.1| - 0.037 13.2 1.4 0.68 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|344212000|ref|YP_004796320.1| - 0.04 13.5 1.6 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4379 PF14311.1 gi|344212000|ref|YP_004796320.1| - 0.04 13.7 2.5 0.8 9.5 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4379) Opy2 PF09463.5 gi|344212000|ref|YP_004796320.1| - 0.047 13.7 0.7 8 6.6 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DUF1610 PF07754.6 gi|344212000|ref|YP_004796320.1| - 0.051 13.6 4.5 0.59 10.3 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Dehyd-heme_bind PF09098.5 gi|344212000|ref|YP_004796320.1| - 0.069 12.6 0.1 0.069 12.6 0.1 1.1 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding UPF0515 PF15135.1 gi|344212000|ref|YP_004796320.1| - 0.075 12.0 0.4 0.084 11.9 0.3 1.0 1 0 0 1 1 1 0 Uncharacterised protein UPF0515 zf-ISL3 PF14690.1 gi|344212000|ref|YP_004796320.1| - 0.078 13.0 1.0 4 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.5 gi|344212000|ref|YP_004796320.1| - 0.094 12.6 0.3 1.9 8.4 0.0 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) Sgf11 PF08209.6 gi|344212000|ref|YP_004796320.1| - 0.1 11.9 2.8 1.9 7.8 0.4 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_KTR PF14205.1 gi|344212000|ref|YP_004796320.1| - 0.1 12.0 1.3 6 6.4 0.0 2.1 2 0 0 2 2 2 0 Cysteine-rich KTR Zn_Tnp_IS1595 PF12760.2 gi|344212000|ref|YP_004796320.1| - 0.12 12.1 4.4 0.32 10.8 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain E7 PF00527.13 gi|344212000|ref|YP_004796320.1| - 0.13 12.4 1.6 1.3 9.2 0.0 2.0 1 1 1 2 2 2 0 E7 protein, Early protein Ogr_Delta PF04606.7 gi|344212000|ref|YP_004796320.1| - 0.14 11.7 1.9 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-CHY PF05495.7 gi|344212000|ref|YP_004796320.1| - 0.18 12.0 2.2 0.81 9.8 1.8 1.7 1 1 1 2 2 2 0 CHY zinc finger UPF0547 PF10571.4 gi|344212000|ref|YP_004796320.1| - 0.24 11.1 6.2 5 6.9 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|344212000|ref|YP_004796320.1| - 0.48 9.9 4.1 3.4 7.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|344212000|ref|YP_004796320.1| - 0.79 8.9 4.5 3.4 6.9 3.3 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|344212000|ref|YP_004796320.1| - 0.9 9.5 5.0 15 5.6 3.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|344212000|ref|YP_004796320.1| - 1 9.2 6.0 0.8 9.6 0.3 2.2 1 1 1 2 2 2 0 Rubredoxin zf-HYPF PF07503.7 gi|344212000|ref|YP_004796320.1| - 1.9 7.9 5.6 4.5 6.7 3.9 1.6 1 1 0 1 1 1 0 HypF finger TFIIB PF00382.14 gi|344212001|ref|YP_004796321.1| - 5.1e-36 122.3 0.0 3.1e-17 62.1 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344212001|ref|YP_004796321.1| - 5.2e-17 60.8 4.6 1.7e-16 59.2 3.6 1.6 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|344212001|ref|YP_004796321.1| - 6.8e-05 22.7 0.0 0.026 14.4 0.0 2.3 1 1 1 2 2 2 2 Cyclin, C-terminal domain RRN7 PF11781.3 gi|344212001|ref|YP_004796321.1| - 0.0022 17.4 1.5 0.004 16.6 1.0 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|344212001|ref|YP_004796321.1| - 0.022 14.2 1.4 0.04 13.3 1.0 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|344212001|ref|YP_004796321.1| - 0.035 13.4 0.1 0.17 11.1 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Fe-ADH PF00465.14 gi|344212001|ref|YP_004796321.1| - 0.053 12.1 0.1 0.14 10.7 0.0 1.6 2 0 0 2 2 2 0 Iron-containing alcohol dehydrogenase HTH_24 PF13412.1 gi|344212001|ref|YP_004796321.1| - 0.12 11.7 0.1 0.26 10.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zf-ribbon_3 PF13248.1 gi|344212001|ref|YP_004796321.1| - 0.24 10.6 1.3 0.42 9.8 0.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344212001|ref|YP_004796321.1| - 7.8 6.5 5.8 14 5.7 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Peptidase_M50B PF13398.1 gi|344212002|ref|YP_004796322.1| - 2.2 7.6 8.6 0.67 9.3 4.0 1.5 1 1 1 2 2 2 0 Peptidase M50B-like HILPDA PF15220.1 gi|344212002|ref|YP_004796322.1| - 5.6 7.0 6.0 23 5.0 0.2 2.6 2 1 1 3 3 3 0 Hypoxia-inducible lipid droplet-associated HTH_5 PF01022.15 gi|344212003|ref|YP_004796323.1| - 6.3e-12 44.9 0.0 8.3e-12 44.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|344212003|ref|YP_004796323.1| - 2.4e-10 40.0 0.0 3.2e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|344212003|ref|YP_004796323.1| - 9.8e-07 28.5 0.0 1.3e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.14 gi|344212003|ref|YP_004796323.1| - 2e-05 24.2 0.0 2.5e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|344212003|ref|YP_004796323.1| - 2.9e-05 23.3 0.0 4.2e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344212003|ref|YP_004796323.1| - 0.0011 18.5 0.0 0.0015 18.1 0.0 1.3 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|344212003|ref|YP_004796323.1| - 0.0043 16.6 0.0 0.0064 16.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.12 gi|344212003|ref|YP_004796323.1| - 0.0062 16.0 0.0 0.007 15.8 0.0 1.2 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|344212003|ref|YP_004796323.1| - 0.02 15.2 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|344212003|ref|YP_004796323.1| - 0.021 14.9 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|344212003|ref|YP_004796323.1| - 0.026 14.0 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_29 PF13551.1 gi|344212003|ref|YP_004796323.1| - 0.061 13.4 0.0 0.073 13.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.1 gi|344212003|ref|YP_004796323.1| - 0.087 12.0 0.1 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 PaaX PF07848.7 gi|344212003|ref|YP_004796323.1| - 0.14 12.2 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein Fasciclin PF02469.17 gi|344212004|ref|YP_004796324.1| - 2.2e-24 85.9 0.0 2.6e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Fasciclin domain DUF357 PF04010.8 gi|344212005|ref|YP_004796325.1| - 3.6e-28 97.0 0.1 4.1e-28 96.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Pyr_redox_2 PF07992.9 gi|344212006|ref|YP_004796326.1| - 1.6e-24 86.9 0.0 2.5e-24 86.2 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344212006|ref|YP_004796326.1| - 2.3e-13 50.3 0.3 1.5e-11 44.5 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344212006|ref|YP_004796326.1| - 2.6e-12 47.2 0.0 1.5e-08 34.9 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|344212006|ref|YP_004796326.1| - 6.3e-06 25.3 0.3 0.093 11.6 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344212006|ref|YP_004796326.1| - 1.5e-05 24.0 1.9 0.00063 18.7 0.0 3.0 2 1 1 3 3 3 1 FAD binding domain HI0933_like PF03486.9 gi|344212006|ref|YP_004796326.1| - 4e-05 22.2 0.0 0.021 13.2 0.0 2.7 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|344212006|ref|YP_004796326.1| - 0.00021 21.2 0.0 0.0022 17.9 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|344212006|ref|YP_004796326.1| - 0.0015 18.7 0.0 0.03 14.5 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|344212006|ref|YP_004796326.1| - 0.011 14.8 0.1 0.031 13.3 0.0 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344212006|ref|YP_004796326.1| - 0.031 13.3 0.0 0.43 9.6 0.0 2.2 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|344212006|ref|YP_004796326.1| - 0.037 12.9 0.7 0.7 8.6 0.0 3.0 4 0 0 4 4 4 0 Glucose inhibited division protein A RibD_C PF01872.12 gi|344212008|ref|YP_004796328.1| - 3.6e-51 173.6 0.0 4e-51 173.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Tir_receptor_N PF07490.6 gi|344212008|ref|YP_004796328.1| - 0.017 14.7 0.1 0.023 14.3 0.1 1.1 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus tRNA_anti-codon PF01336.20 gi|344212010|ref|YP_004796330.1| - 3e-06 26.9 2.0 0.25 11.2 0.0 4.2 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Metallophos_2 PF12850.2 gi|344212012|ref|YP_004796332.1| - 7.9e-06 25.7 0.5 1.9e-05 24.5 0.3 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344212012|ref|YP_004796332.1| - 0.0049 16.2 0.8 0.065 12.6 0.0 2.2 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase FBPase PF00316.15 gi|344212013|ref|YP_004796333.1| - 1.9e-59 201.1 0.0 1.1e-58 198.6 0.0 1.8 1 1 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|344212013|ref|YP_004796333.1| - 0.0038 16.5 0.2 0.019 14.2 0.1 1.9 1 1 0 1 1 1 1 Inositol monophosphatase family DEAD_assoc PF08494.6 gi|344212014|ref|YP_004796334.1| - 3.4e-38 131.2 0.0 8.3e-38 129.9 0.0 1.7 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|344212014|ref|YP_004796334.1| - 3.3e-32 111.3 0.0 2.3e-31 108.5 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|344212014|ref|YP_004796334.1| - 1.4e-17 63.3 0.1 3.7e-17 61.9 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|344212014|ref|YP_004796334.1| - 3.1e-08 33.6 0.0 6.5e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|344212014|ref|YP_004796334.1| - 1.7e-05 24.4 0.3 0.0021 17.7 0.0 3.1 3 0 0 3 3 3 1 Part of AAA domain SNF2_N PF00176.18 gi|344212014|ref|YP_004796334.1| - 0.00012 21.0 0.0 0.00047 19.0 0.0 1.8 2 0 0 2 2 2 1 SNF2 family N-terminal domain Zn-ribbon_8 PF09723.5 gi|344212014|ref|YP_004796334.1| - 0.07 13.1 1.3 0.14 12.1 0.9 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|344212014|ref|YP_004796334.1| - 0.12 12.0 0.2 0.47 10.1 0.1 2.0 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Spo0M PF07070.6 gi|344212015|ref|YP_004796335.1| - 8.8e-63 211.5 0.2 1e-62 211.3 0.1 1.0 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.17 gi|344212015|ref|YP_004796335.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain PAS_4 PF08448.5 gi|344212016|ref|YP_004796336.1| - 2.1e-30 104.9 1.3 3.1e-15 56.1 0.2 2.4 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|344212016|ref|YP_004796336.1| - 6.7e-28 97.1 0.0 4.9e-13 49.3 0.0 2.5 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|344212016|ref|YP_004796336.1| - 5.1e-21 74.7 0.0 1.8e-20 73.0 0.0 1.9 1 1 1 2 2 2 1 Response regulator receiver domain PAS PF00989.19 gi|344212016|ref|YP_004796336.1| - 3.1e-14 52.7 0.1 7.9e-08 32.0 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|344212016|ref|YP_004796336.1| - 1.4e-11 43.8 0.0 5.5e-05 22.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|344212016|ref|YP_004796336.1| - 1.4e-06 28.2 0.0 0.0069 16.3 0.0 2.7 2 1 0 2 2 2 2 PAS fold OKR_DC_1_N PF03709.10 gi|344212016|ref|YP_004796336.1| - 0.0005 20.1 0.1 0.002 18.1 0.0 2.1 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain zinc_ribbon_2 PF13240.1 gi|344212017|ref|YP_004796337.1| - 3.5e-05 23.1 2.1 5.8e-05 22.4 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|344212017|ref|YP_004796337.1| - 5.5e-05 22.9 0.9 8.4e-05 22.3 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344212017|ref|YP_004796337.1| - 0.00016 20.7 3.4 0.00027 20.0 2.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Lipase_3 PF01764.20 gi|344212017|ref|YP_004796337.1| - 0.023 14.3 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) Prok-RING_1 PF14446.1 gi|344212017|ref|YP_004796337.1| - 0.075 12.7 1.1 0.11 12.2 0.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF35_N PF12172.3 gi|344212017|ref|YP_004796337.1| - 0.16 11.9 3.1 0.31 10.9 2.1 1.5 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|344212017|ref|YP_004796337.1| - 0.47 10.2 5.8 0.88 9.3 4.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|344212017|ref|YP_004796337.1| - 0.52 9.6 2.4 15 4.9 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|344212017|ref|YP_004796337.1| - 0.52 10.1 4.7 1.7 8.5 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|344212017|ref|YP_004796337.1| - 0.57 10.2 8.2 4.1 7.4 0.5 2.3 1 1 1 2 2 2 0 zinc-finger zf-TFIIB PF13453.1 gi|344212017|ref|YP_004796337.1| - 0.8 8.9 3.6 25 4.1 2.5 2.3 1 1 0 1 1 1 0 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.11 gi|344212017|ref|YP_004796337.1| - 0.92 9.2 5.5 1.4 8.6 1.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-IS66 PF13005.2 gi|344212017|ref|YP_004796337.1| - 1.2 9.2 6.0 5.9 6.9 0.6 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2628 PF10947.3 gi|344212017|ref|YP_004796337.1| - 1.3 8.8 9.1 0.54 10.0 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) Zn-ribbon_8 PF09723.5 gi|344212017|ref|YP_004796337.1| - 1.7 8.6 6.1 2.1 8.3 0.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain MutS_V PF00488.16 gi|344212018|ref|YP_004796338.1| - 4.3e-11 42.6 0.0 6.4e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|344212018|ref|YP_004796338.1| - 0.00079 18.9 1.9 0.025 14.0 0.0 3.1 2 2 1 3 3 3 1 AAA-like domain AAA_28 PF13521.1 gi|344212018|ref|YP_004796338.1| - 0.0018 18.2 1.9 0.005 16.8 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_21 PF13304.1 gi|344212018|ref|YP_004796338.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|344212018|ref|YP_004796338.1| - 0.054 13.3 0.0 0.099 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.3 gi|344212018|ref|YP_004796338.1| - 0.079 13.0 0.0 0.25 11.4 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif AAA_29 PF13555.1 gi|344212018|ref|YP_004796338.1| - 0.12 11.8 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|344212018|ref|YP_004796338.1| - 0.13 12.6 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Polyketide_cyc2 PF10604.4 gi|344212019|ref|YP_004796339.1| - 4.3e-15 56.0 0.4 4.9e-15 55.9 0.2 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|344212019|ref|YP_004796339.1| - 2.3e-08 34.0 0.0 3e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|344212019|ref|YP_004796339.1| - 0.00044 20.3 0.0 0.00068 19.7 0.0 1.3 1 1 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COXG PF06240.8 gi|344212019|ref|YP_004796339.1| - 0.031 13.9 0.0 0.11 12.1 0.0 1.9 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) E1-E2_ATPase PF00122.15 gi|344212021|ref|YP_004796341.1| - 6.8e-42 143.0 1.4 6.8e-42 143.0 1.0 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|344212021|ref|YP_004796341.1| - 1.9e-33 116.6 6.7 1.9e-33 116.6 4.7 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344212021|ref|YP_004796341.1| - 1.7e-13 51.1 0.0 3.2e-13 50.2 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|344212021|ref|YP_004796341.1| - 7.6e-09 35.5 0.0 2.1e-08 34.1 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|344212021|ref|YP_004796341.1| - 4.5e-05 23.1 0.8 6.5e-05 22.6 0.6 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|344212021|ref|YP_004796341.1| - 0.0012 19.3 0.3 0.0029 18.1 0.2 1.6 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.1 gi|344212022|ref|YP_004796342.1| - 3.7e-47 160.6 17.3 4.7e-47 160.3 12.0 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Copper-bind PF00127.15 gi|344212024|ref|YP_004796344.1| - 1e-34 118.7 1.5 1.1e-16 60.8 0.1 2.9 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|344212024|ref|YP_004796344.1| - 0.0093 15.8 8.3 0.0093 15.8 5.8 3.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF4198 PF10670.4 gi|344212024|ref|YP_004796344.1| - 0.019 14.9 0.1 5.8 6.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) SPC25 PF06703.6 gi|344212024|ref|YP_004796344.1| - 0.09 12.3 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF4651 PF15513.1 gi|344212024|ref|YP_004796344.1| - 0.1 12.0 0.6 12 5.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4651) COX2 PF00116.15 gi|344212025|ref|YP_004796345.1| - 8.7e-24 83.6 0.1 1.2e-23 83.1 0.1 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|344212025|ref|YP_004796345.1| - 4.8e-06 26.3 0.0 7.6e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX1 PF00115.15 gi|344212026|ref|YP_004796346.1| - 1.3e-75 254.7 48.0 1.3e-75 254.7 33.3 1.8 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I CARDB PF07705.6 gi|344212027|ref|YP_004796347.1| - 0.066 13.2 0.3 0.096 12.7 0.2 1.3 1 0 0 1 1 1 0 CARDB DZR PF12773.2 gi|344212028|ref|YP_004796348.1| - 5.5e-05 22.9 0.7 8.9e-05 22.2 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344212028|ref|YP_004796348.1| - 0.00014 21.2 3.3 0.00022 20.6 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|344212028|ref|YP_004796348.1| - 0.0002 20.4 4.7 0.00032 19.8 3.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|344212028|ref|YP_004796348.1| - 0.11 12.2 0.1 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.3 gi|344212028|ref|YP_004796348.1| - 0.14 12.0 3.8 0.33 10.9 2.6 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|344212028|ref|YP_004796348.1| - 0.2 11.3 1.1 0.31 10.7 0.7 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|344212028|ref|YP_004796348.1| - 1.5 8.5 3.2 2.6 7.8 2.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|344212029|ref|YP_004796349.1| - 9.1e-12 44.6 8.1 1.6e-11 43.8 5.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344212029|ref|YP_004796349.1| - 1.1e-11 43.5 9.1 7.7e-06 24.9 1.2 2.6 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344212029|ref|YP_004796349.1| - 2.2e-10 39.7 4.6 0.00021 20.6 0.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain FHA PF00498.21 gi|344212029|ref|YP_004796349.1| - 2.5e-07 30.7 0.0 5.2e-07 29.6 0.0 1.6 1 1 0 1 1 1 1 FHA domain UPF0547 PF10571.4 gi|344212029|ref|YP_004796349.1| - 5.6e-06 25.9 6.0 0.017 14.8 0.6 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|344212029|ref|YP_004796349.1| - 0.00034 20.4 8.4 0.011 15.7 0.4 3.4 2 1 0 3 3 3 1 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|344212029|ref|YP_004796349.1| - 0.00078 19.1 4.1 0.16 11.7 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbons Nudix_N_2 PF14803.1 gi|344212029|ref|YP_004796349.1| - 0.0031 17.1 11.3 0.0074 15.9 0.7 3.6 4 0 0 4 4 4 2 Nudix N-terminal zf-DHHC PF01529.15 gi|344212029|ref|YP_004796349.1| - 0.12 11.7 2.6 3.5 6.9 0.4 2.2 1 1 1 2 2 2 0 DHHC palmitoyltransferase NOB1_Zn_bind PF08772.6 gi|344212029|ref|YP_004796349.1| - 1.6 8.6 4.6 4.2 7.2 0.2 2.3 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-dskA_traR PF01258.12 gi|344212029|ref|YP_004796349.1| - 1.7 8.4 6.3 12 5.7 0.3 2.8 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4_3 PF13920.1 gi|344212029|ref|YP_004796349.1| - 2.5 7.8 6.0 4.4 7.0 0.3 2.7 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) SAPS PF04499.10 gi|344212029|ref|YP_004796349.1| - 2.7 6.5 4.4 3.3 6.2 3.1 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein NMD3 PF04981.8 gi|344212029|ref|YP_004796349.1| - 2.7 7.0 4.8 5.1 6.1 3.3 1.5 1 0 0 1 1 1 0 NMD3 family HypA PF01155.14 gi|344212029|ref|YP_004796349.1| - 6.2 6.5 5.3 59 3.3 3.7 2.2 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|344212029|ref|YP_004796349.1| - 8.3 6.1 10.3 3.9 7.1 0.9 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain PP2C_2 PF13672.1 gi|344212030|ref|YP_004796350.1| - 7.9e-12 45.0 0.0 1.6e-11 44.0 0.0 1.4 1 1 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|344212030|ref|YP_004796350.1| - 3.2e-09 36.5 0.2 3.1e-08 33.3 0.1 2.4 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|344212030|ref|YP_004796350.1| - 1.4e-05 24.8 4.9 8.6e-05 22.3 3.4 2.1 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.20 gi|344212031|ref|YP_004796351.1| - 4e-31 108.1 0.0 5e-31 107.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|344212031|ref|YP_004796351.1| - 2.9e-15 56.0 0.0 3.7e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.21 gi|344212031|ref|YP_004796351.1| - 1.7e-06 28.0 0.0 4.3e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 FHA domain RIO1 PF01163.17 gi|344212031|ref|YP_004796351.1| - 0.0073 15.6 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|344212031|ref|YP_004796351.1| - 0.017 14.8 0.4 0.031 14.0 0.1 1.7 2 0 0 2 2 2 0 Phosphotransferase enzyme family VWA_2 PF13519.1 gi|344212032|ref|YP_004796352.1| - 1.4e-19 70.8 2.0 1.5e-19 70.7 0.4 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|344212032|ref|YP_004796352.1| - 2.2e-13 50.2 0.0 4.7e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|344212032|ref|YP_004796352.1| - 8.3e-12 45.0 0.0 1.7e-11 44.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|344212032|ref|YP_004796352.1| - 5.1e-06 26.5 0.0 1.3e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.9 gi|344212032|ref|YP_004796352.1| - 3.9e-05 22.9 0.0 8.9e-05 21.7 0.0 1.6 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.4 gi|344212032|ref|YP_004796352.1| - 0.0098 15.7 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 1 vWA found in TerF C terminus MerT PF02411.10 gi|344212033|ref|YP_004796353.1| - 0.6 9.9 7.1 0.35 10.6 3.2 1.9 1 1 1 2 2 2 0 MerT mercuric transport protein DUF3179 PF11376.3 gi|344212034|ref|YP_004796354.1| - 2.6e-94 315.2 0.0 3e-94 315.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3179) Abhydrolase_2 PF02230.11 gi|344212035|ref|YP_004796355.1| - 1.5e-20 73.6 0.0 6.1e-20 71.6 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|344212035|ref|YP_004796355.1| - 1e-12 48.0 0.0 1.2e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|344212035|ref|YP_004796355.1| - 5.5e-11 42.7 0.2 4.5e-08 33.2 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|344212035|ref|YP_004796355.1| - 5.6e-08 32.3 0.1 1.4e-07 31.0 0.0 1.6 1 1 1 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|344212035|ref|YP_004796355.1| - 0.00011 21.7 0.0 0.00012 21.5 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.15 gi|344212035|ref|YP_004796355.1| - 0.0002 20.9 0.0 0.00089 18.8 0.0 1.7 1 1 0 2 2 2 1 alpha/beta hydrolase fold PE-PPE PF08237.6 gi|344212035|ref|YP_004796355.1| - 0.0075 15.7 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 PE-PPE domain Cutinase PF01083.17 gi|344212035|ref|YP_004796355.1| - 0.026 14.2 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 Cutinase Peptidase_S9 PF00326.16 gi|344212035|ref|YP_004796355.1| - 0.026 13.7 0.1 2.8 7.1 0.0 2.4 2 1 1 3 3 3 0 Prolyl oligopeptidase family Esterase_phd PF10503.4 gi|344212035|ref|YP_004796355.1| - 0.036 13.3 0.0 0.058 12.6 0.0 1.4 1 1 0 1 1 1 0 Esterase PHB depolymerase Abhydrolase_3 PF07859.8 gi|344212035|ref|YP_004796355.1| - 0.048 13.2 0.2 0.53 9.8 0.0 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Glyoxalase PF00903.20 gi|344212036|ref|YP_004796356.1| - 1.5e-23 83.1 0.1 6.8e-13 48.7 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|344212036|ref|YP_004796356.1| - 1.3e-16 61.1 0.1 4e-09 37.0 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|344212036|ref|YP_004796356.1| - 0.0011 19.0 0.1 0.5 10.3 0.0 3.5 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.1 gi|344212036|ref|YP_004796356.1| - 0.02 14.5 0.0 0.88 9.2 0.0 2.2 2 0 0 2 2 2 0 CppA N-terminal UPF0058 PF01893.11 gi|344212037|ref|YP_004796357.1| - 4.2e-22 77.9 0.4 4.4e-22 77.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|344212038|ref|YP_004796358.1| - 2.5e-41 139.7 0.2 3.2e-41 139.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zf-ribbon_3 PF13248.1 gi|344212038|ref|YP_004796358.1| - 0.027 13.6 0.1 0.055 12.6 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344212038|ref|YP_004796358.1| - 0.088 12.3 0.2 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Cwf_Cwc_15 PF04889.7 gi|344212038|ref|YP_004796358.1| - 0.34 10.5 6.7 0.38 10.4 4.7 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Pheromone PF08015.6 gi|344212038|ref|YP_004796358.1| - 0.94 10.3 4.8 1.9 9.4 3.3 1.4 1 0 0 1 1 1 0 Fungal mating-type pheromone OGG_N PF07934.7 gi|344212039|ref|YP_004796359.1| - 6.5e-15 55.1 0.0 1.2e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|344212039|ref|YP_004796359.1| - 4.6e-13 49.3 0.0 7.9e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Acylphosphatase PF00708.13 gi|344212040|ref|YP_004796360.1| - 1.1e-26 92.7 0.4 1.3e-26 92.5 0.3 1.0 1 0 0 1 1 1 1 Acylphosphatase BLUF PF04940.7 gi|344212040|ref|YP_004796360.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Sensors of blue-light using FAD YjeF_N PF03853.10 gi|344212041|ref|YP_004796361.1| - 2.3e-44 150.9 1.3 2.6e-44 150.8 0.1 1.7 2 0 0 2 2 2 1 YjeF-related protein N-terminus Carb_kinase PF01256.12 gi|344212041|ref|YP_004796361.1| - 7.4e-44 149.8 0.4 1.1e-43 149.3 0.3 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|344212041|ref|YP_004796361.1| - 1.4e-07 30.9 0.0 2.4e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family MMR_HSR1 PF01926.18 gi|344212042|ref|YP_004796362.1| - 2.8e-18 65.9 0.0 6.5e-18 64.7 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|344212042|ref|YP_004796362.1| - 1.4e-11 44.1 0.2 3.2e-11 43.0 0.1 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|344212042|ref|YP_004796362.1| - 6.4e-10 39.0 0.0 1.9e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|344212042|ref|YP_004796362.1| - 1.1e-05 24.9 1.0 0.0011 18.4 0.1 2.6 2 1 1 3 3 3 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|344212042|ref|YP_004796362.1| - 7.5e-05 22.0 0.2 0.067 12.4 0.1 2.8 3 0 0 3 3 3 2 Ferrous iron transport protein B Miro PF08477.8 gi|344212042|ref|YP_004796362.1| - 0.0011 19.4 0.0 0.0045 17.4 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein AAA_18 PF13238.1 gi|344212042|ref|YP_004796362.1| - 0.0018 18.5 0.6 0.012 15.8 0.0 2.8 2 1 1 3 3 3 1 AAA domain Ras PF00071.17 gi|344212042|ref|YP_004796362.1| - 0.0026 17.1 0.0 0.021 14.2 0.0 2.1 2 0 0 2 2 2 1 Ras family AAA_17 PF13207.1 gi|344212042|ref|YP_004796362.1| - 0.0033 18.2 4.0 0.0054 17.5 0.1 2.9 2 2 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|344212042|ref|YP_004796362.1| - 0.0096 15.4 0.0 0.58 9.6 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|344212042|ref|YP_004796362.1| - 0.013 15.8 1.5 2.6 8.3 0.4 2.5 3 0 0 3 3 2 0 AAA domain Arf PF00025.16 gi|344212042|ref|YP_004796362.1| - 0.014 14.6 1.3 1.1 8.4 0.9 2.3 1 1 0 1 1 1 0 ADP-ribosylation factor family MobB PF03205.9 gi|344212042|ref|YP_004796362.1| - 0.02 14.5 0.0 0.064 12.9 0.0 2.1 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|344212042|ref|YP_004796362.1| - 0.023 14.2 0.2 0.14 11.6 0.1 2.1 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|344212042|ref|YP_004796362.1| - 0.033 14.4 0.0 0.11 12.7 0.0 2.0 1 1 0 1 1 1 0 ABC transporter DUF258 PF03193.11 gi|344212042|ref|YP_004796362.1| - 0.039 13.1 0.0 0.17 11.0 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344212042|ref|YP_004796362.1| - 0.039 13.9 0.0 0.12 12.3 0.0 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|344212042|ref|YP_004796362.1| - 0.064 13.1 0.0 0.16 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|344212042|ref|YP_004796362.1| - 0.068 13.0 1.2 0.58 10.0 0.0 2.9 2 2 0 2 2 2 0 AAA domain DUF1949 PF09186.6 gi|344212042|ref|YP_004796362.1| - 0.098 12.2 1.3 2.3 7.8 0.0 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1949) peroxidase PF00141.18 gi|344212043|ref|YP_004796363.1| - 5.4e-93 310.7 0.0 8.6e-53 179.1 0.0 2.3 2 0 0 2 2 2 2 Peroxidase FUN14 PF04930.10 gi|344212044|ref|YP_004796364.1| - 2.8e-20 72.4 4.2 3.1e-20 72.3 2.9 1.0 1 0 0 1 1 1 1 FUN14 family SBDS PF01172.13 gi|344212045|ref|YP_004796365.1| - 1.4e-23 82.4 0.0 2.6e-23 81.5 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|344212045|ref|YP_004796365.1| - 7.6e-19 67.6 0.0 1.1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.21 gi|344212046|ref|YP_004796366.1| - 9e-59 197.9 0.0 1.1e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|344212046|ref|YP_004796366.1| - 2.6e-14 52.1 0.1 4.5e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature RNase_P_Rpp14 PF01900.14 gi|344212047|ref|YP_004796367.1| - 4.7e-24 84.3 0.0 6.6e-24 83.8 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|344212049|ref|YP_004796369.1| - 1.8e-34 118.1 0.0 2.4e-34 117.7 0.0 1.2 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|344212049|ref|YP_004796369.1| - 0.0083 15.9 0.0 0.012 15.4 0.0 1.2 1 1 0 1 1 1 1 PHP domain FMN_dh PF01070.13 gi|344212049|ref|YP_004796369.1| - 0.034 12.9 1.3 0.059 12.1 0.9 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase RNA_binding PF01877.12 gi|344212050|ref|YP_004796370.1| - 6.9e-30 103.5 0.0 8.9e-30 103.1 0.0 1.1 1 0 0 1 1 1 1 RNA binding DUF2520 PF10728.4 gi|344212050|ref|YP_004796370.1| - 0.084 12.3 0.0 0.27 10.6 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF2520) Cu-binding_MopE PF11617.3 gi|344212050|ref|YP_004796370.1| - 0.15 11.9 1.3 0.31 10.8 0.9 1.6 1 0 0 1 1 1 0 Protein metal binding site eIF-1a PF01176.14 gi|344212051|ref|YP_004796371.1| - 0.013 14.8 0.1 0.064 12.6 0.0 1.8 1 1 1 2 2 2 0 Translation initiation factor 1A / IF-1 DUF1918 PF08940.6 gi|344212051|ref|YP_004796371.1| - 0.017 14.4 0.1 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) DUF1541 PF07563.6 gi|344212051|ref|YP_004796371.1| - 0.11 12.2 0.2 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1541) NUDIX PF00293.23 gi|344212052|ref|YP_004796372.1| - 2.8e-17 62.6 0.3 4.3e-17 62.0 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4015 PF13200.1 gi|344212053|ref|YP_004796373.1| - 0.00019 20.4 0.1 0.00024 20.1 0.0 1.2 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain ThiC PF01964.13 gi|344212054|ref|YP_004796374.1| - 2.7e-195 648.8 0.0 3e-195 648.6 0.0 1.0 1 0 0 1 1 1 1 ThiC family zf-ribbon_3 PF13248.1 gi|344212054|ref|YP_004796374.1| - 0.08 12.1 0.3 0.16 11.2 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain SBP_bac_11 PF13531.1 gi|344212055|ref|YP_004796375.1| - 1e-19 71.0 2.5 1.4e-19 70.7 1.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|344212056|ref|YP_004796376.1| - 1.3e-16 60.6 12.8 1.3e-16 60.6 8.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC2_membrane_5 PF13346.1 gi|344212056|ref|YP_004796376.1| - 0.062 12.5 8.2 0.12 11.6 5.7 1.5 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2232 PF09991.4 gi|344212056|ref|YP_004796376.1| - 0.92 8.4 19.7 0.14 11.1 10.7 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) MoaE PF02391.12 gi|344212057|ref|YP_004796377.1| - 1.3e-20 73.3 0.1 2.3e-20 72.5 0.1 1.5 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|344212057|ref|YP_004796377.1| - 1.9e-20 72.9 0.1 3.2e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|344212057|ref|YP_004796377.1| - 0.0001 23.0 0.4 0.00037 21.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.22 gi|344212057|ref|YP_004796377.1| - 0.00062 19.2 0.3 0.0012 18.3 0.2 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|344212057|ref|YP_004796377.1| - 0.0035 17.2 0.0 0.0062 16.4 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase PRK PF00485.13 gi|344212057|ref|YP_004796377.1| - 0.0077 15.8 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|344212057|ref|YP_004796377.1| - 0.011 15.7 1.2 0.024 14.6 0.8 1.8 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|344212057|ref|YP_004796377.1| - 0.014 15.7 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_33 PF13671.1 gi|344212057|ref|YP_004796377.1| - 0.049 13.5 0.0 0.1 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|344212057|ref|YP_004796377.1| - 0.054 12.2 0.1 0.099 11.4 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|344212057|ref|YP_004796377.1| - 0.054 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|344212057|ref|YP_004796377.1| - 0.055 13.9 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein SRPRB PF09439.5 gi|344212057|ref|YP_004796377.1| - 0.07 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|344212057|ref|YP_004796377.1| - 0.075 13.3 0.1 1.5 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.4 gi|344212057|ref|YP_004796377.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation DUF258 PF03193.11 gi|344212057|ref|YP_004796377.1| - 0.11 11.6 0.2 0.17 11.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|344212057|ref|YP_004796377.1| - 4.6 7.1 7.2 14 5.6 3.1 2.8 2 1 0 2 2 2 0 AAA domain MoaC PF01967.16 gi|344212058|ref|YP_004796378.1| - 5.6e-44 149.1 3.7 6.3e-44 148.9 2.5 1.0 1 0 0 1 1 1 1 MoaC family MoCF_biosynth PF00994.19 gi|344212059|ref|YP_004796379.1| - 1.4e-34 118.5 0.2 1.8e-34 118.2 0.1 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain TRAM PF01938.15 gi|344212060|ref|YP_004796380.1| - 1.3e-10 40.9 2.6 2.1e-10 40.1 1.8 1.4 1 0 0 1 1 1 1 TRAM domain Trypan_PARP PF05887.6 gi|344212060|ref|YP_004796380.1| - 0.0063 16.3 4.5 0.0094 15.7 3.1 1.3 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Corona_nucleoca PF00937.13 gi|344212060|ref|YP_004796380.1| - 0.088 11.7 4.6 0.1 11.5 3.2 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein Neisseria_TspB PF05616.8 gi|344212060|ref|YP_004796380.1| - 0.16 10.3 2.5 0.18 10.1 1.7 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein AF-4 PF05110.8 gi|344212060|ref|YP_004796380.1| - 1.1 7.0 14.9 1.2 6.8 10.3 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein HD PF01966.17 gi|344212062|ref|YP_004796382.1| - 1.5e-09 37.9 2.9 2.3e-09 37.2 2.0 1.3 1 0 0 1 1 1 1 HD domain HTH_10 PF04967.7 gi|344212063|ref|YP_004796383.1| - 3.8e-20 71.1 0.1 6.1e-20 70.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|344212063|ref|YP_004796383.1| - 0.0018 17.5 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|344212063|ref|YP_004796383.1| - 0.0097 15.1 0.0 0.025 13.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|344212063|ref|YP_004796383.1| - 0.013 15.1 0.1 0.12 12.0 0.0 2.6 3 0 0 3 3 3 0 MarR family LexA_DNA_bind PF01726.11 gi|344212063|ref|YP_004796383.1| - 0.025 14.1 0.1 0.13 11.8 0.1 2.2 1 1 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.2 gi|344212063|ref|YP_004796383.1| - 0.032 14.0 0.1 0.27 11.0 0.0 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|344212063|ref|YP_004796383.1| - 0.054 13.1 0.0 0.19 11.4 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r3 PF04539.11 gi|344212063|ref|YP_004796383.1| - 0.073 12.9 0.2 0.26 11.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_27 PF13463.1 gi|344212063|ref|YP_004796383.1| - 0.096 13.0 0.0 0.26 11.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Aminotran_4 PF01063.14 gi|344212063|ref|YP_004796383.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class IV HTH_22 PF13309.1 gi|344212063|ref|YP_004796383.1| - 0.11 12.2 0.0 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 HTH domain Cytochrom_B_N PF00033.14 gi|344212064|ref|YP_004796384.1| - 0.045 13.1 2.1 0.46 9.8 1.5 2.2 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB ABC2_membrane_4 PF12730.2 gi|344212064|ref|YP_004796384.1| - 1.1 8.3 7.6 8.6 5.4 0.0 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein Rieske PF00355.21 gi|344212065|ref|YP_004796385.1| - 1.3e-10 40.7 0.0 2e-10 40.1 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|344212065|ref|YP_004796385.1| - 0.0018 18.1 2.0 0.0029 17.4 0.3 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|344212066|ref|YP_004796386.1| - 7.1e-42 143.0 0.4 7.1e-42 143.0 0.3 2.9 4 0 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|344212066|ref|YP_004796386.1| - 1.2e-10 41.0 9.8 1.2e-10 41.0 6.8 2.3 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|344212066|ref|YP_004796386.1| - 3.7e-06 27.0 0.2 1.4e-05 25.2 0.1 2.1 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.1 gi|344212066|ref|YP_004796386.1| - 0.11 12.6 14.9 3.5 7.8 8.6 3.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) UCR_Fe-S_N PF10399.4 gi|344212066|ref|YP_004796386.1| - 0.12 11.5 0.1 0.12 11.5 0.1 3.4 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ni_hydr_CYTB PF01292.15 gi|344212066|ref|YP_004796386.1| - 5.2 6.4 21.3 0.016 14.5 1.3 3.2 2 1 1 3 3 3 0 Prokaryotic cytochrome b561 IncA PF04156.9 gi|344212067|ref|YP_004796387.1| - 0.036 13.6 0.4 0.044 13.3 0.3 1.2 1 0 0 1 1 1 0 IncA protein DUF3040 PF11239.3 gi|344212067|ref|YP_004796387.1| - 0.52 10.3 2.8 0.79 9.8 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Molybdopterin PF00384.17 gi|344212068|ref|YP_004796388.1| - 4e-87 292.7 0.0 6.3e-87 292.0 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|344212068|ref|YP_004796388.1| - 3.6e-22 78.2 0.0 8.2e-22 77.1 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.4 gi|344212068|ref|YP_004796388.1| - 0.01 15.7 3.2 0.02 14.8 2.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.11 gi|344212068|ref|YP_004796388.1| - 0.015 15.1 0.3 0.03 14.1 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.13 gi|344212068|ref|YP_004796388.1| - 0.089 12.7 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.1 gi|344212069|ref|YP_004796389.1| - 2.5e-34 117.0 6.2 2.5e-34 117.0 4.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344212069|ref|YP_004796389.1| - 2.2e-19 69.5 5.0 5e-08 33.1 0.0 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344212069|ref|YP_004796389.1| - 3e-12 46.1 18.3 3.6e-06 26.6 3.2 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344212069|ref|YP_004796389.1| - 3.8e-10 39.8 15.9 0.0056 16.9 0.2 3.3 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344212069|ref|YP_004796389.1| - 7.4e-06 25.5 30.5 6.9e-05 22.5 2.1 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4 PF00037.22 gi|344212069|ref|YP_004796389.1| - 0.00091 18.7 29.5 0.011 15.3 1.9 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|344212069|ref|YP_004796389.1| - 0.0014 19.0 34.7 0.035 14.6 4.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|344212069|ref|YP_004796389.1| - 0.0015 18.8 19.0 0.056 13.7 0.1 4.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|344212069|ref|YP_004796389.1| - 0.0018 18.8 14.3 0.11 13.0 0.0 4.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|344212069|ref|YP_004796389.1| - 0.0021 17.8 27.2 0.076 12.9 0.8 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_13 PF13370.1 gi|344212069|ref|YP_004796389.1| - 0.0042 17.4 0.1 0.0042 17.4 0.1 3.7 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|344212069|ref|YP_004796389.1| - 0.013 15.5 17.6 0.044 13.8 5.0 3.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344212069|ref|YP_004796389.1| - 0.015 15.1 2.2 0.015 15.1 1.5 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|344212069|ref|YP_004796389.1| - 0.044 14.1 1.6 0.044 14.1 1.1 4.5 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|344212069|ref|YP_004796389.1| - 0.5 11.1 19.7 8.8 7.1 0.4 4.3 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain EB_dh PF09459.5 gi|344212070|ref|YP_004796390.1| - 8.1e-30 104.1 7.9 4.4e-28 98.4 5.5 2.4 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.10 gi|344212071|ref|YP_004796391.1| - 5.6e-07 29.4 5.7 1.4e-05 24.9 3.1 2.8 1 1 1 2 2 2 1 Nitrate reductase delta subunit HEAT_2 PF13646.1 gi|344212073|ref|YP_004796393.1| - 3.1e-30 104.3 31.8 9.5e-13 48.2 3.0 3.1 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|344212073|ref|YP_004796393.1| - 8.7e-11 40.9 14.9 0.1 12.7 0.2 5.9 6 0 0 6 6 6 4 HEAT repeat HEAT_EZ PF13513.1 gi|344212073|ref|YP_004796393.1| - 1.1e-08 35.3 19.0 0.0054 17.1 0.4 5.8 5 1 1 6 6 6 4 HEAT-like repeat Vac14_Fab1_bd PF12755.2 gi|344212073|ref|YP_004796393.1| - 0.0061 16.9 0.1 2.9 8.3 0.0 3.4 2 1 2 4 4 4 1 Vacuolar 14 Fab1-binding region Adaptin_N PF01602.15 gi|344212073|ref|YP_004796393.1| - 0.0074 14.6 0.8 0.24 9.6 0.1 2.7 1 1 2 3 3 3 2 Adaptin N terminal region Cnd1 PF12717.2 gi|344212073|ref|YP_004796393.1| - 0.068 13.0 0.2 7.3 6.3 0.0 3.3 1 1 2 3 3 3 0 non-SMC mitotic condensation complex subunit 1 DNA_alkylation PF08713.6 gi|344212073|ref|YP_004796393.1| - 0.19 11.1 4.7 0.43 10.0 2.5 1.9 1 1 1 2 2 2 0 DNA alkylation repair enzyme ParA PF10609.4 gi|344212074|ref|YP_004796394.1| - 7.1e-26 89.9 0.3 1.6e-25 88.8 0.2 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|344212074|ref|YP_004796394.1| - 4.3e-22 78.4 0.0 7e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2249 PF10006.4 gi|344212074|ref|YP_004796394.1| - 2.9e-15 55.6 0.6 6.1e-15 54.5 0.4 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF59 PF01883.14 gi|344212074|ref|YP_004796394.1| - 8.1e-09 35.3 2.0 2.6e-08 33.7 1.4 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|344212074|ref|YP_004796394.1| - 9.5e-07 28.8 0.0 7.3e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|344212074|ref|YP_004796394.1| - 1e-05 24.7 0.0 1.6e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|344212074|ref|YP_004796394.1| - 0.00062 19.2 0.2 0.015 14.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|344212074|ref|YP_004796394.1| - 0.0014 17.7 0.0 0.0024 16.9 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.1 gi|344212074|ref|YP_004796394.1| - 0.0017 17.9 0.1 0.082 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|344212074|ref|YP_004796394.1| - 0.0095 15.0 0.4 0.079 11.9 0.1 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_19 PF13245.1 gi|344212074|ref|YP_004796394.1| - 0.15 11.8 1.2 6.1 6.6 0.1 3.2 3 0 0 3 3 3 0 Part of AAA domain UPF0126 PF03458.8 gi|344212075|ref|YP_004796395.1| - 1e-39 134.0 26.2 7.8e-21 73.4 6.4 2.4 3 0 0 3 3 3 2 UPF0126 domain Nitrate_red_del PF02613.10 gi|344212076|ref|YP_004796396.1| - 4.3e-32 110.8 0.0 5.7e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.9 gi|344212077|ref|YP_004796397.1| - 9.2e-70 235.5 20.5 1.6e-69 234.7 14.2 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|344212078|ref|YP_004796398.1| - 1.8e-26 91.9 18.2 1.2e-17 63.5 4.8 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344212078|ref|YP_004796398.1| - 2.1e-19 69.6 25.2 2.2e-09 37.5 5.2 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344212078|ref|YP_004796398.1| - 1.7e-15 57.0 25.8 6e-10 39.2 5.9 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344212078|ref|YP_004796398.1| - 1.4e-13 50.3 53.7 4.9e-08 32.6 6.4 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344212078|ref|YP_004796398.1| - 2.1e-13 49.2 41.5 1.3e-08 34.1 3.0 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|344212078|ref|YP_004796398.1| - 3.5e-13 48.6 35.5 8.8e-07 28.4 2.2 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|344212078|ref|YP_004796398.1| - 9.2e-13 47.4 40.5 1.1e-07 31.4 3.3 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|344212078|ref|YP_004796398.1| - 5.4e-10 39.1 22.4 5.2e-05 23.1 4.3 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|344212078|ref|YP_004796398.1| - 2.2e-07 30.9 43.8 0.019 15.4 3.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|344212078|ref|YP_004796398.1| - 3.9e-06 26.7 37.9 0.00014 21.9 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|344212078|ref|YP_004796398.1| - 9.5e-06 25.8 25.2 0.013 15.7 5.5 3.9 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344212078|ref|YP_004796398.1| - 1e-05 25.2 30.5 0.00091 19.0 1.1 3.9 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|344212078|ref|YP_004796398.1| - 5.9e-05 23.5 20.6 0.0033 17.9 0.3 4.0 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|344212078|ref|YP_004796398.1| - 0.0038 17.9 29.4 0.69 10.6 4.2 4.3 2 1 2 4 4 4 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|344212078|ref|YP_004796398.1| - 0.042 14.2 1.2 0.042 14.2 0.9 3.7 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|344212078|ref|YP_004796398.1| - 0.049 14.0 24.5 0.25 11.7 1.3 4.3 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|344212078|ref|YP_004796398.1| - 1.7 8.3 24.6 0.75 9.4 3.1 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Molybdopterin PF00384.17 gi|344212079|ref|YP_004796399.1| - 1.2e-56 192.3 0.0 2.2e-56 191.4 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|344212079|ref|YP_004796399.1| - 5.6e-24 84.0 0.1 1.1e-23 83.1 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|344212079|ref|YP_004796399.1| - 1.3e-12 47.3 1.2 2.9e-12 46.1 0.9 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|344212079|ref|YP_004796399.1| - 0.00045 19.9 0.7 0.0015 18.4 0.5 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4350 PF14258.1 gi|344212079|ref|YP_004796399.1| - 0.03 14.5 0.1 0.091 12.9 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) HTH_10 PF04967.7 gi|344212081|ref|YP_004796401.1| - 1.1e-17 63.2 0.4 2.1e-17 62.4 0.3 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344212081|ref|YP_004796401.1| - 0.00041 19.9 1.2 0.0025 17.4 0.0 2.4 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|344212081|ref|YP_004796401.1| - 0.017 14.4 0.0 0.056 12.7 0.0 1.9 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.2 gi|344212081|ref|YP_004796401.1| - 0.02 14.7 0.1 0.043 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|344212081|ref|YP_004796401.1| - 0.024 13.9 0.1 0.063 12.6 0.1 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|344212081|ref|YP_004796401.1| - 0.043 13.5 1.0 0.077 12.7 0.1 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_1_2 PF13022.1 gi|344212081|ref|YP_004796401.1| - 0.062 13.0 0.1 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_11 PF08279.7 gi|344212081|ref|YP_004796401.1| - 0.072 12.7 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_3 PF01381.17 gi|344212081|ref|YP_004796401.1| - 0.081 12.7 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_5 PF01022.15 gi|344212081|ref|YP_004796401.1| - 0.12 12.0 0.1 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4250 PF14056.1 gi|344212081|ref|YP_004796401.1| - 0.15 11.8 0.1 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) BatA PF07584.6 gi|344212082|ref|YP_004796402.1| - 8.6e-16 57.9 7.1 1.7e-15 56.9 4.9 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|344212082|ref|YP_004796402.1| - 8.4e-07 29.2 2.2 8.4e-07 29.2 1.5 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF58 PF01882.13 gi|344212082|ref|YP_004796402.1| - 0.023 14.8 0.3 0.071 13.2 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|344212083|ref|YP_004796403.1| - 1e-27 97.3 10.2 1.8e-25 90.0 0.4 3.7 3 1 0 3 3 3 2 von Willebrand factor type A domain VWA PF00092.23 gi|344212083|ref|YP_004796403.1| - 1.5e-17 63.8 0.6 6e-15 55.4 0.0 2.8 2 1 1 3 3 3 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|344212083|ref|YP_004796403.1| - 8.2e-13 48.3 0.1 2e-12 47.0 0.1 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|344212083|ref|YP_004796403.1| - 2.2e-09 36.7 1.1 4e-07 29.4 0.0 2.9 2 1 1 3 3 3 2 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|344212083|ref|YP_004796403.1| - 2.5e-07 30.2 0.2 7.6e-07 28.6 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1355) DUF2201 PF09967.4 gi|344212083|ref|YP_004796403.1| - 0.005 16.8 0.2 0.015 15.3 0.1 1.9 2 0 0 2 2 2 1 VWA-like domain (DUF2201) Filamin PF00630.14 gi|344212083|ref|YP_004796403.1| - 0.067 13.7 0.1 13 6.4 0.0 2.8 2 1 0 2 2 2 0 Filamin/ABP280 repeat IncA PF04156.9 gi|344212084|ref|YP_004796404.1| - 1.5e-10 40.9 33.8 6e-08 32.5 9.1 2.2 1 1 1 2 2 2 2 IncA protein TPR_MLP1_2 PF07926.7 gi|344212084|ref|YP_004796404.1| - 4.1e-10 39.5 30.6 1.1e-06 28.4 15.3 2.5 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.3 gi|344212084|ref|YP_004796404.1| - 9.3e-10 38.1 35.9 1.9e-07 30.7 4.2 4.0 1 1 3 4 4 4 2 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|344212084|ref|YP_004796404.1| - 1.5e-09 37.1 31.9 0.00089 18.6 2.0 5.4 1 1 4 5 5 5 4 Septum formation initiator BLOC1_2 PF10046.4 gi|344212084|ref|YP_004796404.1| - 2e-09 37.4 23.0 0.00013 21.9 3.8 3.4 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Myosin_tail_1 PF01576.14 gi|344212084|ref|YP_004796404.1| - 5.3e-09 34.4 31.7 7.2e-09 33.9 22.0 1.1 1 0 0 1 1 1 1 Myosin tail CENP-F_leu_zip PF10473.4 gi|344212084|ref|YP_004796404.1| - 5.5e-09 36.0 34.9 1.8e-05 24.6 7.4 2.8 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.14 gi|344212084|ref|YP_004796404.1| - 1.1e-08 34.8 27.4 4.5e-08 32.9 9.1 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family ADIP PF11559.3 gi|344212084|ref|YP_004796404.1| - 1.3e-08 34.9 29.4 5e-06 26.5 3.6 2.3 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding AAA_13 PF13166.1 gi|344212084|ref|YP_004796404.1| - 1.7e-08 33.4 16.1 2.3e-08 33.0 11.2 1.2 1 0 0 1 1 1 1 AAA domain PspA_IM30 PF04012.7 gi|344212084|ref|YP_004796404.1| - 2.9e-08 33.3 20.6 0.0073 15.6 0.4 3.4 1 1 2 3 3 3 3 PspA/IM30 family bZIP_1 PF00170.16 gi|344212084|ref|YP_004796404.1| - 2.9e-08 33.5 26.3 0.028 14.3 0.4 5.3 1 1 4 5 5 5 3 bZIP transcription factor ATG16 PF08614.6 gi|344212084|ref|YP_004796404.1| - 4.1e-08 33.2 37.4 8.5e-05 22.4 6.2 3.0 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) Tropomyosin PF00261.15 gi|344212084|ref|YP_004796404.1| - 5e-08 32.3 30.6 7.2e-08 31.8 21.2 1.3 1 0 0 1 1 1 1 Tropomyosin Tropomyosin_1 PF12718.2 gi|344212084|ref|YP_004796404.1| - 1.4e-07 31.4 39.1 0.00036 20.3 15.9 3.1 1 1 1 2 2 2 2 Tropomyosin like Spc7 PF08317.6 gi|344212084|ref|YP_004796404.1| - 1.9e-07 30.0 27.0 0.00059 18.5 8.4 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein MAD PF05557.8 gi|344212084|ref|YP_004796404.1| - 2.3e-07 29.3 24.8 3.1e-07 28.9 17.2 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein APG6 PF04111.7 gi|344212084|ref|YP_004796404.1| - 2.8e-07 29.8 21.6 2.8e-07 29.8 15.0 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 Reo_sigmaC PF04582.7 gi|344212084|ref|YP_004796404.1| - 3.4e-07 29.7 14.0 0.00091 18.5 4.5 2.1 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Atg14 PF10186.4 gi|344212084|ref|YP_004796404.1| - 6.5e-07 28.5 25.0 0.0012 17.8 2.9 2.0 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 DUF4201 PF13870.1 gi|344212084|ref|YP_004796404.1| - 1.3e-06 28.0 18.8 1.2e-05 24.8 7.5 3.0 1 1 2 3 3 3 2 Domain of unknown function (DUF4201) GAS PF13851.1 gi|344212084|ref|YP_004796404.1| - 1.3e-06 27.7 23.3 0.0068 15.6 12.3 2.5 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|344212084|ref|YP_004796404.1| - 1.5e-06 28.0 21.1 0.0012 18.6 2.1 2.9 1 1 2 3 3 3 3 Laminin Domain II DUF4200 PF13863.1 gi|344212084|ref|YP_004796404.1| - 1.8e-06 27.8 27.5 0.0001 22.2 9.5 3.2 1 1 1 3 3 3 1 Domain of unknown function (DUF4200) Laminin_I PF06008.9 gi|344212084|ref|YP_004796404.1| - 3.8e-06 26.4 27.1 1.6e-05 24.3 2.7 2.5 1 1 1 2 2 2 2 Laminin Domain I Shugoshin_N PF07558.6 gi|344212084|ref|YP_004796404.1| - 3.9e-06 26.4 11.4 0.072 12.8 0.5 4.2 4 0 0 4 4 3 2 Shugoshin N-terminal coiled-coil region bZIP_2 PF07716.10 gi|344212084|ref|YP_004796404.1| - 4.1e-06 26.5 33.0 0.012 15.4 0.5 6.2 2 1 3 6 6 6 5 Basic region leucine zipper DUF972 PF06156.8 gi|344212084|ref|YP_004796404.1| - 4.3e-06 27.0 24.4 0.0089 16.3 1.3 3.9 1 1 3 4 4 4 2 Protein of unknown function (DUF972) DUF1664 PF07889.7 gi|344212084|ref|YP_004796404.1| - 4.5e-06 26.4 17.4 0.00054 19.7 4.1 2.6 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) DUF2205 PF10224.4 gi|344212084|ref|YP_004796404.1| - 4.7e-06 26.0 5.7 4.7e-06 26.0 4.0 3.6 1 1 2 3 3 2 1 Predicted coiled-coil protein (DUF2205) DUF2353 PF09789.4 gi|344212084|ref|YP_004796404.1| - 5.4e-06 25.8 18.7 5.4e-06 25.8 12.9 2.2 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) DUF3584 PF12128.3 gi|344212084|ref|YP_004796404.1| - 5.6e-06 24.0 24.8 9.4e-06 23.2 17.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) FlaC_arch PF05377.6 gi|344212084|ref|YP_004796404.1| - 5.8e-06 26.0 29.2 0.0018 18.1 1.2 5.1 3 1 2 5 5 5 2 Flagella accessory protein C (FlaC) TMF_TATA_bd PF12325.3 gi|344212084|ref|YP_004796404.1| - 7.8e-06 25.6 32.4 0.004 16.8 4.8 3.2 1 1 2 3 3 3 2 TATA element modulatory factor 1 TATA binding WXG100 PF06013.7 gi|344212084|ref|YP_004796404.1| - 1e-05 25.4 18.4 0.36 10.8 0.1 5.0 1 1 4 5 5 5 1 Proteins of 100 residues with WXG TBPIP PF07106.8 gi|344212084|ref|YP_004796404.1| - 1.1e-05 25.1 26.4 0.0028 17.2 3.5 3.0 1 1 2 3 3 3 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mod_r PF07200.8 gi|344212084|ref|YP_004796404.1| - 1.1e-05 25.4 23.4 0.014 15.3 4.6 3.1 1 1 2 3 3 3 3 Modifier of rudimentary (Mod(r)) protein DUF869 PF05911.6 gi|344212084|ref|YP_004796404.1| - 1.2e-05 23.7 25.5 0.0019 16.5 4.3 2.0 1 1 1 2 2 2 2 Plant protein of unknown function (DUF869) Filament PF00038.16 gi|344212084|ref|YP_004796404.1| - 1.4e-05 24.7 28.6 0.056 12.9 3.0 2.8 1 1 2 3 3 3 3 Intermediate filament protein HrpB7 PF09486.5 gi|344212084|ref|YP_004796404.1| - 1.5e-05 25.0 18.1 0.0022 17.9 5.2 2.7 1 1 1 2 2 2 2 Bacterial type III secretion protein (HrpB7) Cast PF10174.4 gi|344212084|ref|YP_004796404.1| - 2e-05 22.9 29.0 2.6e-05 22.5 20.1 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Ax_dynein_light PF10211.4 gi|344212084|ref|YP_004796404.1| - 2e-05 24.5 27.0 0.064 13.0 0.5 3.6 1 1 2 3 3 3 2 Axonemal dynein light chain NPV_P10 PF05531.7 gi|344212084|ref|YP_004796404.1| - 2.9e-05 24.2 23.2 0.1 12.8 1.2 3.9 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein DUF904 PF06005.7 gi|344212084|ref|YP_004796404.1| - 3.6e-05 23.9 36.4 0.00063 19.9 1.9 4.2 1 1 3 4 4 4 2 Protein of unknown function (DUF904) Striatin PF08232.7 gi|344212084|ref|YP_004796404.1| - 4.6e-05 23.7 21.9 0.00044 20.5 1.5 2.8 1 1 2 3 3 3 1 Striatin family Prefoldin_2 PF01920.15 gi|344212084|ref|YP_004796404.1| - 6.1e-05 22.7 30.8 0.019 14.6 0.8 4.2 1 1 2 4 4 4 2 Prefoldin subunit HSBP1 PF06825.7 gi|344212084|ref|YP_004796404.1| - 7.2e-05 22.2 13.8 0.024 14.2 1.1 4.4 1 1 1 2 2 2 1 Heat shock factor binding protein 1 Fib_alpha PF08702.5 gi|344212084|ref|YP_004796404.1| - 9.8e-05 22.5 18.4 0.0023 18.0 1.6 2.2 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family CALCOCO1 PF07888.6 gi|344212084|ref|YP_004796404.1| - 0.00012 20.5 15.9 0.00012 20.5 11.0 2.0 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like DivIVA PF05103.8 gi|344212084|ref|YP_004796404.1| - 0.00014 21.9 25.3 0.0082 16.1 8.3 3.1 1 1 2 3 3 3 2 DivIVA protein COG2 PF06148.6 gi|344212084|ref|YP_004796404.1| - 0.00015 21.6 18.0 0.49 10.2 1.0 3.5 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 IFT57 PF10498.4 gi|344212084|ref|YP_004796404.1| - 0.00017 20.4 18.0 0.00021 20.1 12.0 1.5 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 Prefoldin PF02996.12 gi|344212084|ref|YP_004796404.1| - 0.00019 21.0 26.6 0.03 13.9 0.7 5.0 1 1 5 6 6 6 1 Prefoldin subunit EzrA PF06160.7 gi|344212084|ref|YP_004796404.1| - 0.00022 19.5 22.9 0.00052 18.3 15.9 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA TSC22 PF01166.13 gi|344212084|ref|YP_004796404.1| - 0.00024 20.9 33.6 0.012 15.6 2.7 4.9 2 2 3 5 5 5 2 TSC-22/dip/bun family XhlA PF10779.4 gi|344212084|ref|YP_004796404.1| - 0.00027 20.7 3.3 0.00027 20.7 2.3 4.3 2 1 1 3 3 1 1 Haemolysin XhlA MscS_porin PF12795.2 gi|344212084|ref|YP_004796404.1| - 0.00029 20.2 34.8 0.0033 16.7 24.5 2.0 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF4140 PF13600.1 gi|344212084|ref|YP_004796404.1| - 0.00038 20.8 28.6 2.3 8.7 6.8 4.4 1 1 1 2 2 1 0 N-terminal domain of unknown function (DUF4140) DUF812 PF05667.6 gi|344212084|ref|YP_004796404.1| - 0.00043 18.9 26.4 0.011 14.2 2.9 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF812) DUF4618 PF15397.1 gi|344212084|ref|YP_004796404.1| - 0.00044 19.6 21.8 0.049 12.9 0.3 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4618) DUF3450 PF11932.3 gi|344212084|ref|YP_004796404.1| - 0.00049 19.4 25.3 0.024 13.8 1.9 2.9 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) Syntaxin-6_N PF09177.6 gi|344212084|ref|YP_004796404.1| - 0.00057 20.2 26.1 0.11 12.8 4.9 3.5 1 1 2 3 3 3 2 Syntaxin 6, N-terminal DUF2730 PF10805.3 gi|344212084|ref|YP_004796404.1| - 0.00061 19.4 16.7 0.58 9.9 1.5 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) DUF641 PF04859.7 gi|344212084|ref|YP_004796404.1| - 0.00071 19.3 16.8 0.35 10.6 3.9 3.1 1 1 2 3 3 3 1 Plant protein of unknown function (DUF641) APG17 PF04108.7 gi|344212084|ref|YP_004796404.1| - 0.0008 18.3 17.1 0.0008 18.3 11.9 1.7 1 1 1 2 2 2 1 Autophagy protein Apg17 WEMBL PF05701.6 gi|344212084|ref|YP_004796404.1| - 0.00091 17.7 23.5 0.0014 17.1 16.3 1.2 1 0 0 1 1 1 1 Weak chloroplast movement under blue light DUF948 PF06103.6 gi|344212084|ref|YP_004796404.1| - 0.00097 18.9 18.6 0.2 11.5 0.4 3.8 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) Mnd1 PF03962.10 gi|344212084|ref|YP_004796404.1| - 0.001 18.7 26.7 0.18 11.4 8.8 2.6 1 1 1 2 2 2 1 Mnd1 family zf-C4H2 PF10146.4 gi|344212084|ref|YP_004796404.1| - 0.0012 18.9 22.8 0.032 14.2 5.9 2.0 1 1 1 2 2 2 2 Zinc finger-containing protein LPP PF04728.8 gi|344212084|ref|YP_004796404.1| - 0.0012 18.5 8.6 0.031 14.0 0.1 3.6 1 1 3 4 4 4 1 Lipoprotein leucine-zipper PilJ PF13675.1 gi|344212084|ref|YP_004796404.1| - 0.0013 19.0 19.1 0.0079 16.5 1.3 3.0 1 1 1 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2968 PF11180.3 gi|344212084|ref|YP_004796404.1| - 0.0016 17.8 26.2 0.47 9.8 3.7 3.2 1 1 2 3 3 3 1 Protein of unknown function (DUF2968) CCDC144C PF14915.1 gi|344212084|ref|YP_004796404.1| - 0.0016 17.4 28.0 0.17 10.7 7.3 2.4 1 1 1 2 2 2 1 CCDC144C protein coiled-coil region Seryl_tRNA_N PF02403.17 gi|344212084|ref|YP_004796404.1| - 0.0017 18.3 24.5 0.011 15.7 4.6 3.0 1 1 2 3 3 3 2 Seryl-tRNA synthetase N-terminal domain HALZ PF02183.13 gi|344212084|ref|YP_004796404.1| - 0.0018 17.9 29.7 0.063 13.0 1.4 4.8 4 1 2 6 6 4 2 Homeobox associated leucine zipper OEP PF02321.13 gi|344212084|ref|YP_004796404.1| - 0.002 17.7 14.6 0.0045 16.6 4.6 2.1 2 0 0 2 2 2 1 Outer membrane efflux protein Tektin PF03148.9 gi|344212084|ref|YP_004796404.1| - 0.0025 16.4 30.2 0.06 11.8 1.3 2.9 1 1 1 2 2 2 1 Tektin family Prominin PF05478.6 gi|344212084|ref|YP_004796404.1| - 0.0025 15.4 13.3 0.39 8.1 0.6 2.1 1 1 0 1 1 1 1 Prominin Cep57_CLD_2 PF14197.1 gi|344212084|ref|YP_004796404.1| - 0.0028 17.5 9.7 0.0028 17.5 6.7 4.3 1 1 4 5 5 5 1 Centrosome localisation domain of PPC89 Hormone_1 PF00103.15 gi|344212084|ref|YP_004796404.1| - 0.003 16.9 6.8 0.034 13.5 0.1 2.8 1 1 1 3 3 3 1 Somatotropin hormone family MCPsignal PF00015.16 gi|344212084|ref|YP_004796404.1| - 0.0032 17.0 11.9 0.062 12.8 2.8 2.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.1 gi|344212084|ref|YP_004796404.1| - 0.0034 17.6 23.4 0.9 9.8 1.4 4.3 1 1 3 4 4 4 0 Snapin/Pallidin Bap31 PF05529.7 gi|344212084|ref|YP_004796404.1| - 0.0036 16.7 13.5 0.37 10.2 1.9 2.8 1 1 1 2 2 2 2 B-cell receptor-associated protein 31-like OrfB_IS605 PF01385.14 gi|344212084|ref|YP_004796404.1| - 0.0036 16.7 0.4 0.0054 16.1 0.2 1.3 1 0 0 1 1 1 1 Probable transposase CCDC155 PF14662.1 gi|344212084|ref|YP_004796404.1| - 0.004 16.7 33.7 0.006 16.2 5.8 2.4 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 FliD_C PF07195.7 gi|344212084|ref|YP_004796404.1| - 0.0041 16.4 17.2 0.14 11.3 2.7 3.2 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Cortex-I_coil PF09304.5 gi|344212084|ref|YP_004796404.1| - 0.0041 17.1 30.5 0.11 12.5 5.9 3.2 1 1 2 3 3 3 1 Cortexillin I, coiled coil Macoilin PF09726.4 gi|344212084|ref|YP_004796404.1| - 0.0042 15.4 24.5 0.0061 14.9 17.0 1.2 1 0 0 1 1 1 1 Transmembrane protein AATF-Che1 PF13339.1 gi|344212084|ref|YP_004796404.1| - 0.0042 17.2 18.4 0.58 10.3 1.1 2.7 1 1 1 2 2 2 1 Apoptosis antagonizing transcription factor Nup54 PF13874.1 gi|344212084|ref|YP_004796404.1| - 0.0049 16.5 22.7 0.16 11.6 0.6 3.1 1 1 2 3 3 3 2 Nucleoporin complex subunit 54 DUF724 PF05266.9 gi|344212084|ref|YP_004796404.1| - 0.0062 16.1 4.3 0.0062 16.1 3.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF724) RmuC PF02646.11 gi|344212084|ref|YP_004796404.1| - 0.0068 15.2 14.2 0.99 8.1 0.9 3.0 1 1 2 3 3 3 0 RmuC family BicD PF09730.4 gi|344212084|ref|YP_004796404.1| - 0.0085 14.5 26.1 0.017 13.5 18.1 1.4 1 1 0 1 1 1 1 Microtubule-associated protein Bicaudal-D Taxilin PF09728.4 gi|344212084|ref|YP_004796404.1| - 0.0088 15.1 23.1 0.0083 15.2 12.1 2.1 1 1 1 2 2 2 1 Myosin-like coiled-coil protein GrpE PF01025.14 gi|344212084|ref|YP_004796404.1| - 0.0091 15.5 0.9 0.0091 15.5 0.6 3.7 1 1 2 3 3 3 1 GrpE Spc24 PF08286.6 gi|344212084|ref|YP_004796404.1| - 0.0091 15.6 35.7 0.49 10.0 4.1 4.1 1 1 3 4 4 4 1 Spc24 subunit of Ndc80 AAA_27 PF13514.1 gi|344212084|ref|YP_004796404.1| - 0.0091 13.7 26.5 0.022 12.4 18.4 1.5 1 1 0 1 1 1 1 AAA domain TarH PF02203.10 gi|344212084|ref|YP_004796404.1| - 0.0093 15.8 13.9 0.042 13.6 0.2 2.6 1 1 2 3 3 3 1 Tar ligand binding domain homologue TMPIT PF07851.8 gi|344212084|ref|YP_004796404.1| - 0.0093 15.0 12.6 0.15 11.1 3.7 2.1 2 0 0 2 2 2 1 TMPIT-like protein DUF2130 PF09903.4 gi|344212084|ref|YP_004796404.1| - 0.014 14.2 10.3 0.15 10.7 1.0 3.0 1 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) V_ATPase_I PF01496.14 gi|344212084|ref|YP_004796404.1| - 0.014 13.2 23.8 0.041 11.7 5.8 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|344212084|ref|YP_004796404.1| - 0.015 13.7 19.9 0.052 11.9 2.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DUF3552 PF12072.3 gi|344212084|ref|YP_004796404.1| - 0.015 14.4 33.7 0.012 14.8 12.1 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Lebercilin PF15619.1 gi|344212084|ref|YP_004796404.1| - 0.024 14.0 29.3 1.6 8.1 2.0 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Rab5-bind PF09311.6 gi|344212084|ref|YP_004796404.1| - 0.025 14.4 35.4 0.1 12.4 14.3 2.3 1 1 1 2 2 2 0 Rabaptin-like protein Hemerythrin PF01814.18 gi|344212084|ref|YP_004796404.1| - 0.025 14.7 13.9 0.91 9.6 7.4 3.4 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Phage_GP20 PF06810.6 gi|344212084|ref|YP_004796404.1| - 0.028 13.8 30.2 0.067 12.6 4.1 3.4 1 1 2 3 3 3 0 Phage minor structural protein GP20 COG5 PF10392.4 gi|344212084|ref|YP_004796404.1| - 0.033 14.1 11.2 0.89 9.5 0.2 2.8 1 1 2 3 3 3 0 Golgi transport complex subunit 5 Kinetocho_Slk19 PF12709.2 gi|344212084|ref|YP_004796404.1| - 0.038 14.0 27.0 2.4 8.3 0.6 5.2 1 1 2 3 3 2 0 Central kinetochore-associated EAP30 PF04157.11 gi|344212084|ref|YP_004796404.1| - 0.041 13.0 0.2 0.041 13.0 0.2 2.9 2 1 0 2 2 2 0 EAP30/Vps36 family BRE1 PF08647.6 gi|344212084|ref|YP_004796404.1| - 0.045 13.7 1.3 0.045 13.7 0.9 2.8 2 1 0 2 2 1 0 BRE1 E3 ubiquitin ligase SseC PF04888.7 gi|344212084|ref|YP_004796404.1| - 0.045 13.0 6.7 0.59 9.4 1.7 2.2 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Bacillus_HBL PF05791.6 gi|344212084|ref|YP_004796404.1| - 0.057 12.7 19.8 0.12 11.7 3.3 2.5 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Sipho_Gp157 PF05565.6 gi|344212084|ref|YP_004796404.1| - 0.068 12.7 18.2 0.2 11.2 4.4 2.3 1 1 1 2 2 2 0 Siphovirus Gp157 Fez1 PF06818.10 gi|344212084|ref|YP_004796404.1| - 0.072 13.1 26.2 0.62 10.0 11.4 2.6 1 1 1 2 2 2 0 Fez1 DUF4337 PF14235.1 gi|344212084|ref|YP_004796404.1| - 0.083 12.7 17.1 1.9 8.3 0.6 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4337) FH2 PF02181.18 gi|344212084|ref|YP_004796404.1| - 0.085 11.7 13.6 0.25 10.1 1.2 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain ALIX_LYPXL_bnd PF13949.1 gi|344212084|ref|YP_004796404.1| - 0.087 11.7 29.0 0.77 8.6 2.9 2.1 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Uds1 PF15456.1 gi|344212084|ref|YP_004796404.1| - 0.11 12.5 24.9 0.81 9.6 5.2 3.2 1 1 2 3 3 3 0 Up-regulated During Septation Uso1_p115_C PF04871.8 gi|344212084|ref|YP_004796404.1| - 0.11 12.4 34.6 3.2 7.6 16.6 2.7 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Fmp27_WPPW PF10359.4 gi|344212084|ref|YP_004796404.1| - 0.12 10.7 23.4 0.014 13.8 2.7 2.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DASH_Hsk3 PF08227.6 gi|344212084|ref|YP_004796404.1| - 0.12 12.5 16.1 0.97 9.6 0.6 4.1 3 2 0 4 4 2 0 DASH complex subunit Hsk3 like HsbA PF12296.3 gi|344212084|ref|YP_004796404.1| - 0.13 12.1 4.8 1.5 8.7 0.8 2.6 1 1 2 3 3 3 0 Hydrophobic surface binding protein A Spectrin PF00435.16 gi|344212084|ref|YP_004796404.1| - 0.13 12.5 24.2 2.6 8.3 8.7 3.1 1 1 1 2 2 2 0 Spectrin repeat FemAB PF02388.11 gi|344212084|ref|YP_004796404.1| - 0.15 10.7 15.5 0.27 9.8 0.9 2.2 1 1 1 2 2 2 0 FemAB family Ly49 PF08391.5 gi|344212084|ref|YP_004796404.1| - 0.15 12.1 7.6 0.78 9.8 0.5 2.3 2 0 0 2 2 2 0 Ly49-like protein, N-terminal region THOC7 PF05615.8 gi|344212084|ref|YP_004796404.1| - 0.15 12.2 24.7 0.5 10.6 7.9 2.7 1 1 1 2 2 2 0 Tho complex subunit 7 Arfaptin PF06456.8 gi|344212084|ref|YP_004796404.1| - 0.16 11.3 12.0 0.1 11.9 1.2 2.1 1 1 1 2 2 2 0 Arfaptin-like domain HalX PF08663.5 gi|344212084|ref|YP_004796404.1| - 0.16 11.9 34.8 0.34 10.9 0.7 5.7 1 1 3 4 4 4 0 HalX domain Rootletin PF15035.1 gi|344212084|ref|YP_004796404.1| - 0.16 11.9 35.5 2.1 8.2 14.7 2.6 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion DUF745 PF05335.8 gi|344212084|ref|YP_004796404.1| - 0.16 11.4 15.7 0.047 13.2 6.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF745) DUF4164 PF13747.1 gi|344212084|ref|YP_004796404.1| - 0.17 12.0 36.1 1.2 9.3 7.0 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) EMP24_GP25L PF01105.19 gi|344212084|ref|YP_004796404.1| - 0.18 11.4 23.9 3.7e+03 -2.6 16.5 3.6 1 1 0 1 1 0 0 emp24/gp25L/p24 family/GOLD CDC37_N PF03234.9 gi|344212084|ref|YP_004796404.1| - 0.18 12.0 18.8 0.77 10.0 13.1 1.8 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4446 PF14584.1 gi|344212084|ref|YP_004796404.1| - 0.19 11.5 17.5 4.6 7.0 1.7 3.8 1 1 2 3 3 3 0 Protein of unknown function (DUF4446) HOOK PF05622.7 gi|344212084|ref|YP_004796404.1| - 0.22 9.2 32.2 2.4 5.8 22.3 2.2 1 1 0 1 1 1 0 HOOK protein STAT_alpha PF01017.15 gi|344212084|ref|YP_004796404.1| - 0.22 11.2 17.6 2 8.1 6.9 2.7 1 1 1 2 2 2 0 STAT protein, all-alpha domain CENP-Q PF13094.1 gi|344212084|ref|YP_004796404.1| - 0.22 11.5 33.1 0.036 14.0 5.6 2.8 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit M_domain PF12938.2 gi|344212084|ref|YP_004796404.1| - 0.25 11.1 7.4 8 6.1 3.5 2.3 1 1 1 2 2 2 0 M domain of GW182 Allexi_40kDa PF05549.6 gi|344212084|ref|YP_004796404.1| - 0.26 10.5 15.0 0.19 10.9 1.0 2.4 1 1 2 3 3 3 0 Allexivirus 40kDa protein FUSC PF04632.7 gi|344212084|ref|YP_004796404.1| - 0.26 9.6 13.7 1.3 7.3 9.5 1.8 1 1 0 1 1 1 0 Fusaric acid resistance protein family HR1 PF02185.11 gi|344212084|ref|YP_004796404.1| - 0.27 11.0 23.5 0.53 10.0 2.1 4.1 1 1 3 4 4 4 0 Hr1 repeat KxDL PF10241.4 gi|344212084|ref|YP_004796404.1| - 0.28 11.1 13.1 6 6.8 0.2 3.8 1 1 2 3 3 3 0 Uncharacterized conserved protein Nnf1 PF03980.9 gi|344212084|ref|YP_004796404.1| - 0.3 11.1 26.3 1.2 9.1 0.3 4.7 2 1 2 4 4 4 0 Nnf1 Cluap1 PF10234.4 gi|344212084|ref|YP_004796404.1| - 0.31 10.2 24.0 0.15 11.2 2.9 2.6 1 1 2 3 3 3 0 Clusterin-associated protein-1 DUF4279 PF14106.1 gi|344212084|ref|YP_004796404.1| - 0.31 10.9 7.1 7.7 6.4 0.3 3.3 1 1 2 4 4 2 0 Domain of unknown function (DUF4279) Med4 PF10018.4 gi|344212084|ref|YP_004796404.1| - 0.38 10.1 26.6 2.2 7.6 7.1 3.2 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF2959 PF11172.3 gi|344212084|ref|YP_004796404.1| - 0.38 10.4 17.7 0.57 9.9 2.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) DUF4407 PF14362.1 gi|344212084|ref|YP_004796404.1| - 0.42 9.5 24.1 0.41 9.5 8.8 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Osmo_CC PF08946.5 gi|344212084|ref|YP_004796404.1| - 0.53 10.3 25.4 0.34 10.9 1.5 4.2 1 1 4 5 5 5 0 Osmosensory transporter coiled coil Fzo_mitofusin PF04799.8 gi|344212084|ref|YP_004796404.1| - 0.58 9.5 21.9 1.3 8.4 1.8 3.3 1 1 3 4 4 4 0 fzo-like conserved region GLE1 PF07817.8 gi|344212084|ref|YP_004796404.1| - 0.62 8.9 6.6 3.3 6.5 0.0 2.3 2 1 0 2 2 2 0 GLE1-like protein Lectin_N PF03954.9 gi|344212084|ref|YP_004796404.1| - 0.66 9.3 17.8 3.7 6.9 6.5 2.7 1 1 0 2 2 2 0 Hepatic lectin, N-terminal domain FliD_N PF02465.13 gi|344212084|ref|YP_004796404.1| - 0.67 10.3 11.6 5.6 7.3 1.0 3.5 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus DUF4600 PF15372.1 gi|344212084|ref|YP_004796404.1| - 0.74 10.0 24.1 0.037 14.2 4.7 3.5 1 1 3 4 4 4 0 Domain of unknown function (DUF4600) DUF2935 PF11155.3 gi|344212084|ref|YP_004796404.1| - 0.87 9.6 9.0 1.8e+02 2.2 6.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Sec34 PF04136.10 gi|344212084|ref|YP_004796404.1| - 0.91 9.2 15.7 4.3 7.0 0.3 3.1 1 1 2 3 3 3 0 Sec34-like family RTBV_P46 PF06216.6 gi|344212084|ref|YP_004796404.1| - 0.92 8.2 13.1 0.21 10.3 0.6 2.8 1 1 2 3 3 3 0 Rice tungro bacilliform virus P46 protein EIAV_Rev PF11129.3 gi|344212084|ref|YP_004796404.1| - 0.95 9.4 5.5 1 9.3 0.7 2.5 1 1 0 2 2 2 0 Rev protein of equine infectious anaemia virus HlyD PF00529.15 gi|344212084|ref|YP_004796404.1| - 0.96 8.6 23.9 0.85 8.8 0.6 2.1 1 1 1 2 2 2 0 HlyD family secretion protein OmpH PF03938.9 gi|344212084|ref|YP_004796404.1| - 0.96 9.3 25.2 0.81 9.6 1.8 2.5 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) SlyX PF04102.7 gi|344212084|ref|YP_004796404.1| - 0.99 9.8 30.4 0.08 13.3 4.7 3.5 1 1 2 3 3 2 0 SlyX COG6 PF06419.6 gi|344212084|ref|YP_004796404.1| - 1 7.4 18.0 0.22 9.6 1.2 2.2 1 1 0 2 2 2 0 Conserved oligomeric complex COG6 Viral_P18 PF04521.8 gi|344212084|ref|YP_004796404.1| - 1 8.7 15.3 0.89 9.0 0.1 3.9 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein Syntaxin PF00804.20 gi|344212084|ref|YP_004796404.1| - 1.1 9.4 27.1 0.32 11.1 5.1 2.5 1 1 1 2 2 2 0 Syntaxin Flagellin_C PF00700.16 gi|344212084|ref|YP_004796404.1| - 1.1 9.4 15.8 6.5 6.9 2.7 3.8 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region Exonuc_VII_L PF02601.10 gi|344212084|ref|YP_004796404.1| - 1.1 8.3 20.5 1.1 8.3 8.5 2.0 1 1 1 2 2 2 0 Exonuclease VII, large subunit Cep57_MT_bd PF06657.8 gi|344212084|ref|YP_004796404.1| - 1.1 9.2 22.6 0.051 13.5 3.5 4.2 1 1 3 4 4 4 0 Centrosome microtubule-binding domain of Cep57 Sec2p PF06428.6 gi|344212084|ref|YP_004796404.1| - 1.2 9.0 29.2 1.6 8.5 5.2 3.7 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p GP41 PF00517.12 gi|344212084|ref|YP_004796404.1| - 1.2 8.6 11.5 3.9 6.9 0.1 3.6 1 1 3 4 4 4 0 Retroviral envelope protein Filo_VP35 PF02097.10 gi|344212084|ref|YP_004796404.1| - 1.3 8.1 5.6 9.4 5.3 3.3 2.1 1 1 1 2 2 2 0 Filoviridae VP35 CorA PF01544.13 gi|344212084|ref|YP_004796404.1| - 1.5 7.7 24.0 3.9 6.4 9.3 2.6 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein IL6 PF00489.12 gi|344212084|ref|YP_004796404.1| - 1.6 8.2 8.6 2 7.9 1.6 2.9 1 1 2 3 3 3 0 Interleukin-6/G-CSF/MGF family PMEI PF04043.10 gi|344212084|ref|YP_004796404.1| - 1.8 8.4 8.7 2.1 8.2 1.0 3.0 1 1 2 3 3 3 0 Plant invertase/pectin methylesterase inhibitor Streptin-Immun PF11083.3 gi|344212084|ref|YP_004796404.1| - 1.8 8.6 17.6 5.2 7.1 3.2 3.5 1 1 3 4 4 4 0 Lantibiotic streptin immunity protein DUF848 PF05852.6 gi|344212084|ref|YP_004796404.1| - 2 8.2 31.5 4.1 7.2 8.9 3.1 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) DUF730 PF05325.6 gi|344212084|ref|YP_004796404.1| - 2.2 8.1 5.3 7.1 6.4 0.5 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF730) YlqD PF11068.3 gi|344212084|ref|YP_004796404.1| - 2.2 8.3 22.8 1.3e+02 2.6 8.7 3.3 1 1 1 2 2 1 0 YlqD protein DUF2450 PF10475.4 gi|344212084|ref|YP_004796404.1| - 2.2 7.0 12.8 0.85 8.4 5.2 2.1 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) DegS PF05384.6 gi|344212084|ref|YP_004796404.1| - 2.7 7.1 23.2 6.3 5.9 9.5 2.9 1 1 1 2 2 2 0 Sensor protein DegS DASH_Dam1 PF08653.5 gi|344212084|ref|YP_004796404.1| - 2.8 7.7 16.1 1.6 8.5 0.9 4.2 2 2 2 4 4 4 0 DASH complex subunit Dam1 ApoO PF09769.4 gi|344212084|ref|YP_004796404.1| - 2.9 7.5 5.3 63 3.2 3.7 2.4 1 1 0 1 1 1 0 Apolipoprotein O DUF2664 PF10867.3 gi|344212084|ref|YP_004796404.1| - 3.4 8.3 20.2 2.1 8.9 2.6 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2664) NTR2 PF15458.1 gi|344212084|ref|YP_004796404.1| - 3.4 6.8 30.5 0.55 9.4 3.5 3.7 1 1 3 4 4 4 0 Nineteen complex-related protein 2 YvrJ PF12841.2 gi|344212084|ref|YP_004796404.1| - 3.7 6.9 6.2 1.6 8.0 0.4 3.1 3 1 1 4 4 2 0 YvrJ protein family TMCO5 PF14992.1 gi|344212084|ref|YP_004796404.1| - 4 6.4 32.3 3.5 6.6 12.1 2.4 1 1 1 2 2 2 0 TMCO5 family E2R135 PF11570.3 gi|344212084|ref|YP_004796404.1| - 4.2 7.4 12.0 5.4 7.0 2.8 2.5 1 1 1 2 2 2 0 Coiled-coil receptor-binding R-domain of colicin E2 DUF2316 PF10078.4 gi|344212084|ref|YP_004796404.1| - 4.2 7.4 11.0 0.92 9.5 4.1 2.6 1 1 3 4 4 2 0 Uncharacterized protein conserved in bacteria (DUF2316) P4Ha_N PF08336.6 gi|344212084|ref|YP_004796404.1| - 4.3 7.1 16.3 1.4 8.7 0.3 3.6 1 1 2 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region DUF3053 PF11254.3 gi|344212084|ref|YP_004796404.1| - 4.5 6.4 12.3 3 7.0 2.3 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3053) DUF4559 PF15112.1 gi|344212084|ref|YP_004796404.1| - 4.6 6.3 22.4 2.3 7.3 2.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) ISG65-75 PF11727.3 gi|344212084|ref|YP_004796404.1| - 4.6 6.2 13.9 6.5 5.7 0.7 2.2 1 1 0 2 2 2 0 Invariant surface glycoprotein bZIP_Maf PF03131.12 gi|344212084|ref|YP_004796404.1| - 4.8 7.5 27.5 17 5.8 0.4 4.5 1 1 2 4 4 4 0 bZIP Maf transcription factor DUF489 PF04356.7 gi|344212084|ref|YP_004796404.1| - 4.9 6.6 8.6 10 5.6 2.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF489) TACC PF05010.9 gi|344212084|ref|YP_004796404.1| - 4.9 6.8 22.7 8.1 6.1 6.4 2.4 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) DUF4094 PF13334.1 gi|344212084|ref|YP_004796404.1| - 5 7.5 17.9 0.13 12.6 1.4 3.1 1 1 1 2 2 1 0 Domain of unknown function (DUF4094) XRCC4 PF06632.7 gi|344212084|ref|YP_004796404.1| - 5.2 5.8 21.3 1.3 7.8 7.2 2.6 1 1 2 3 3 3 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 Phlebovirus_NSM PF07246.6 gi|344212084|ref|YP_004796404.1| - 5.4 6.0 20.2 3 6.9 3.0 3.1 1 1 2 3 3 3 0 Phlebovirus nonstructural protein NS-M Adeno_PIX PF03955.9 gi|344212084|ref|YP_004796404.1| - 5.6 7.5 14.7 36 4.9 0.4 3.3 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Nsp1_C PF05064.8 gi|344212084|ref|YP_004796404.1| - 5.9 6.5 24.8 0.41 10.2 4.3 2.9 1 1 1 2 2 2 0 Nsp1-like C-terminal region V-SNARE_C PF12352.3 gi|344212084|ref|YP_004796404.1| - 6 7.0 17.2 2.8 8.0 1.9 3.6 2 2 2 4 4 2 0 Snare region anchored in the vesicle membrane C-terminus UPF0242 PF06785.6 gi|344212084|ref|YP_004796404.1| - 6.2 5.3 21.2 0.99 8.0 8.9 2.5 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) DUF16 PF01519.11 gi|344212084|ref|YP_004796404.1| - 6.7 6.9 17.8 14 5.9 5.2 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF3373 PF11853.3 gi|344212084|ref|YP_004796404.1| - 6.8 5.0 18.6 0.21 10.0 0.6 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3373) DUF2802 PF10975.3 gi|344212084|ref|YP_004796404.1| - 7 6.4 20.5 6.9 6.5 0.4 4.9 1 1 4 5 5 4 0 Protein of unknown function (DUF2802) Toxin_52 PF15605.1 gi|344212084|ref|YP_004796404.1| - 7.9 6.4 18.5 11 5.9 0.2 4.0 1 1 3 4 4 4 0 Putative toxin 52 Med9 PF07544.8 gi|344212084|ref|YP_004796404.1| - 8.2 6.2 26.7 4.2 7.1 3.4 4.1 1 1 3 4 4 3 0 RNA polymerase II transcription mediator complex subunit 9 LTXXQ PF07813.7 gi|344212084|ref|YP_004796404.1| - 8.3 6.9 12.6 4.6 7.7 5.6 2.5 1 1 2 3 3 2 0 LTXXQ motif family protein Microtub_assoc PF07989.6 gi|344212084|ref|YP_004796404.1| - 8.5 6.2 18.4 3.2 7.6 1.5 3.9 1 1 3 4 4 4 0 Microtubule associated End3 PF12761.2 gi|344212084|ref|YP_004796404.1| - 8.9 5.9 26.1 5.1 6.7 1.8 2.6 1 1 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 IFT20 PF14931.1 gi|344212084|ref|YP_004796404.1| - 9.3 6.1 17.9 3.3 7.6 6.6 2.8 1 1 2 3 3 3 0 Intraflagellar transport complex B, subunit 20 Prefoldin_3 PF13758.1 gi|344212084|ref|YP_004796404.1| - 9.4 6.0 19.4 6.1 6.6 4.3 3.1 1 1 1 2 2 2 0 Prefoldin subunit Sec20 PF03908.8 gi|344212084|ref|YP_004796404.1| - 9.6 5.9 14.1 13 5.5 0.1 3.7 1 1 4 5 5 4 0 Sec20 PEP-utilisers_N PF05524.8 gi|344212085|ref|YP_004796405.1| - 0.0082 15.9 2.0 0.048 13.4 0.0 2.5 3 0 0 3 3 3 1 PEP-utilising enzyme, N-terminal AAA_3 PF07726.6 gi|344212086|ref|YP_004796406.1| - 4.2e-62 207.5 0.3 7.6e-62 206.7 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344212086|ref|YP_004796406.1| - 1.3e-11 44.3 0.0 2.1e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|344212086|ref|YP_004796406.1| - 7.4e-10 38.1 0.0 1.6e-09 37.0 0.0 1.5 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|344212086|ref|YP_004796406.1| - 1.2e-06 28.7 0.0 2.3e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|344212086|ref|YP_004796406.1| - 0.00016 20.8 0.6 0.0014 17.7 0.4 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|344212086|ref|YP_004796406.1| - 0.0002 20.8 0.0 0.0012 18.3 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|344212086|ref|YP_004796406.1| - 0.0072 15.5 0.0 0.17 11.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|344212086|ref|YP_004796406.1| - 0.018 14.9 0.1 0.072 12.9 0.0 2.0 1 1 1 2 2 2 0 AAA domain (Cdc48 subfamily) DUF58 PF01882.13 gi|344212087|ref|YP_004796407.1| - 5.3e-20 71.3 0.4 4.6e-19 68.3 0.0 2.5 2 1 1 3 3 3 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|344212087|ref|YP_004796407.1| - 4.3e-08 33.4 0.1 9.8e-08 32.2 0.0 1.5 1 1 1 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|344212087|ref|YP_004796407.1| - 1.8e-07 30.5 0.2 4.3e-07 29.3 0.1 1.7 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|344212087|ref|YP_004796407.1| - 0.11 12.5 0.0 2.4 8.1 0.0 2.7 2 1 0 2 2 2 0 VWA-like domain (DUF2201) PyrI PF01948.13 gi|344212088|ref|YP_004796408.1| - 1.1e-37 127.9 0.3 1.4e-37 127.6 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|344212088|ref|YP_004796408.1| - 1.1e-17 63.1 0.2 1.8e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OTCace_N PF02729.16 gi|344212089|ref|YP_004796409.1| - 1.2e-41 141.6 0.0 2.2e-41 140.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|344212089|ref|YP_004796409.1| - 9.5e-38 129.5 0.0 1.6e-37 128.8 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FG-GAP PF01839.18 gi|344212090|ref|YP_004796410.1| - 3.2e-29 99.8 25.3 1.8e-05 24.2 0.7 7.3 7 0 0 7 7 7 7 FG-GAP repeat VCBS PF13517.1 gi|344212090|ref|YP_004796410.1| - 8.9e-26 90.0 24.4 4.8e-11 42.8 1.5 5.8 2 2 4 6 6 6 6 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.3 gi|344212090|ref|YP_004796410.1| - 9.2e-07 28.4 11.8 0.92 8.9 0.1 6.1 2 1 4 7 7 7 4 Insecticide toxin TcdB middle/N-terminal region BBS2_Mid PF14783.1 gi|344212090|ref|YP_004796410.1| - 0.058 13.1 1.9 49 3.7 0.0 4.5 4 1 1 5 5 5 0 Ciliary BBSome complex subunit 2, middle region CbiA PF01656.18 gi|344212091|ref|YP_004796411.1| - 6.8e-16 58.2 0.1 1.1e-15 57.5 0.1 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344212091|ref|YP_004796411.1| - 4.6e-06 26.6 0.0 1.1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|344212091|ref|YP_004796411.1| - 0.00018 20.6 0.2 0.00039 19.5 0.1 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase YhjQ PF06564.7 gi|344212091|ref|YP_004796411.1| - 0.00074 18.9 0.0 0.0062 15.9 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|344212091|ref|YP_004796411.1| - 0.00078 18.5 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ParA PF10609.4 gi|344212091|ref|YP_004796411.1| - 0.024 14.5 2.0 0.051 13.4 0.0 2.4 3 1 0 3 3 3 0 ParA/MinD ATPase like VirC1 PF07015.6 gi|344212091|ref|YP_004796411.1| - 0.028 13.4 0.0 0.42 9.6 0.0 2.2 2 0 0 2 2 2 0 VirC1 protein KaiC PF06745.8 gi|344212092|ref|YP_004796412.1| - 1.2e-07 31.0 0.0 3.9e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 KaiC Trigger_N PF05697.8 gi|344212092|ref|YP_004796412.1| - 0.067 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial trigger factor protein (TF) IncA PF04156.9 gi|344212093|ref|YP_004796413.1| - 1.2 8.6 4.9 1.3 8.5 3.4 1.1 1 0 0 1 1 1 0 IncA protein FKBP_C PF00254.23 gi|344212094|ref|YP_004796414.1| - 6e-08 32.5 0.8 1.2e-07 31.5 0.4 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Sporozoite_P67 PF05642.6 gi|344212094|ref|YP_004796414.1| - 0.037 11.9 0.8 0.062 11.1 0.6 1.3 1 0 0 1 1 1 0 Sporozoite P67 surface antigen ScdA_N PF04405.9 gi|344212094|ref|YP_004796414.1| - 0.083 12.2 0.5 0.22 10.9 0.4 1.7 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) PALP PF00291.20 gi|344212095|ref|YP_004796415.1| - 7.2e-68 229.0 4.2 8.2e-68 228.8 2.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CYTH PF01928.16 gi|344212096|ref|YP_004796416.1| - 1.1e-40 139.2 4.7 1.3e-40 139.0 3.3 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.14 gi|344212097|ref|YP_004796417.1| - 1.8e-176 586.5 6.3 2e-176 586.3 4.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|344212097|ref|YP_004796417.1| - 0.063 13.5 1.8 0.3 11.3 0.0 2.7 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain Asp23 PF03780.8 gi|344212097|ref|YP_004796417.1| - 1.8 8.8 8.9 2.1 8.6 0.9 3.4 2 1 0 2 2 2 0 Asp23 family ThiI PF02568.9 gi|344212098|ref|YP_004796418.1| - 2.8e-43 147.6 0.0 3.9e-43 147.2 0.0 1.1 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|344212098|ref|YP_004796418.1| - 4.9e-12 45.9 0.0 7.4e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 THUMP domain tRNA_Me_trans PF03054.11 gi|344212098|ref|YP_004796418.1| - 0.011 14.3 0.0 0.016 13.7 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase QueC PF06508.8 gi|344212098|ref|YP_004796418.1| - 0.014 14.6 0.0 0.25 10.6 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|344212098|ref|YP_004796418.1| - 0.12 11.8 0.0 0.48 9.8 0.0 1.9 1 1 0 1 1 1 0 PP-loop family PALP PF00291.20 gi|344212100|ref|YP_004796420.1| - 1e-58 199.0 0.0 1.2e-58 198.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NikR_C PF08753.6 gi|344212101|ref|YP_004796421.1| - 9e-18 63.9 0.5 1.3e-17 63.4 0.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|344212101|ref|YP_004796421.1| - 4.1e-06 26.4 0.0 9e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family eIF-1a PF01176.14 gi|344212102|ref|YP_004796422.1| - 1.3e-22 78.9 0.1 1.6e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 UPF0058 PF01893.11 gi|344212103|ref|YP_004796423.1| - 5.5e-21 74.4 1.7 5.7e-21 74.3 1.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 TIG PF01833.19 gi|344212105|ref|YP_004796425.1| - 0.25 11.3 4.0 4.2 7.4 2.8 2.5 1 1 0 1 1 1 0 IPT/TIG domain SKI PF01202.17 gi|344212107|ref|YP_004796427.1| - 0.042 13.7 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Shikimate kinase T2SF PF00482.18 gi|344212110|ref|YP_004796430.1| - 4.1e-26 91.3 13.5 6.9e-15 55.0 0.5 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|344212111|ref|YP_004796431.1| - 1.5e-44 151.9 0.0 3.1e-44 150.8 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|344212111|ref|YP_004796431.1| - 6e-05 22.4 0.1 0.00014 21.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Aminotran_1_2 PF00155.16 gi|344212112|ref|YP_004796432.1| - 3.2e-67 227.0 0.0 3.6e-67 226.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|344212112|ref|YP_004796432.1| - 3.5e-07 29.6 0.0 5.3e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|344212112|ref|YP_004796432.1| - 8.7e-05 21.4 0.0 0.00058 18.7 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V AsnC_trans_reg PF01037.16 gi|344212113|ref|YP_004796433.1| - 2.3e-16 59.2 0.5 5.9e-16 57.9 0.1 1.7 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|344212113|ref|YP_004796433.1| - 2.5e-09 36.3 0.1 6.2e-09 35.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344212113|ref|YP_004796433.1| - 5.6e-06 25.7 0.2 1.6e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|344212113|ref|YP_004796433.1| - 1.5e-05 24.6 0.0 2.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344212113|ref|YP_004796433.1| - 0.00075 19.1 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344212113|ref|YP_004796433.1| - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|344212113|ref|YP_004796433.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.7 gi|344212113|ref|YP_004796433.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|344212113|ref|YP_004796433.1| - 0.017 14.7 0.0 0.047 13.3 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.1 gi|344212113|ref|YP_004796433.1| - 0.021 14.9 0.1 0.034 14.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_IclR PF09339.5 gi|344212113|ref|YP_004796433.1| - 0.021 14.4 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|344212113|ref|YP_004796433.1| - 0.048 13.1 0.2 0.09 12.2 0.1 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_27 PF13463.1 gi|344212113|ref|YP_004796433.1| - 0.049 13.9 0.0 0.23 11.7 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|344212113|ref|YP_004796433.1| - 0.078 12.5 0.0 0.17 11.4 0.0 1.6 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.14 gi|344212113|ref|YP_004796433.1| - 0.086 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FliG_N PF14842.1 gi|344212113|ref|YP_004796433.1| - 0.096 12.8 0.1 0.73 9.9 0.0 2.1 2 0 0 2 2 2 0 FliG N-terminal domain HTH_31 PF13560.1 gi|344212113|ref|YP_004796433.1| - 0.098 12.8 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Gp_dh_C PF02800.15 gi|344212113|ref|YP_004796433.1| - 0.15 11.5 0.2 0.71 9.3 0.0 2.0 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FUR PF01475.14 gi|344212114|ref|YP_004796434.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family AhpC-TSA PF00578.16 gi|344212115|ref|YP_004796435.1| - 7e-19 67.7 0.0 9.5e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344212115|ref|YP_004796435.1| - 2.1e-14 53.3 0.0 2.9e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|344212115|ref|YP_004796435.1| - 5e-06 26.6 0.0 7.5e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|344212115|ref|YP_004796435.1| - 0.00011 22.2 0.0 0.00016 21.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|344212115|ref|YP_004796435.1| - 0.012 15.3 0.0 0.31 10.7 0.0 2.1 1 1 1 2 2 2 0 Thioredoxin T4_deiodinase PF00837.12 gi|344212115|ref|YP_004796435.1| - 0.031 13.2 0.0 0.042 12.8 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase HTH_20 PF12840.2 gi|344212118|ref|YP_004796438.1| - 0.017 14.9 0.1 1.6 8.5 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Methyltransf_3 PF01596.12 gi|344212119|ref|YP_004796439.1| - 2.2e-22 79.1 0.0 2.8e-22 78.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|344212119|ref|YP_004796439.1| - 2.3e-13 50.8 0.1 3.6e-13 50.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344212119|ref|YP_004796439.1| - 8.3e-10 39.2 0.1 1.3e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212119|ref|YP_004796439.1| - 3.2e-09 36.5 0.0 4.2e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212119|ref|YP_004796439.1| - 5e-08 32.9 0.1 1.1e-07 31.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|344212119|ref|YP_004796439.1| - 2e-05 24.2 0.0 2.9e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|344212119|ref|YP_004796439.1| - 3.4e-05 24.1 0.0 5.1e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344212119|ref|YP_004796439.1| - 4.1e-05 23.0 0.0 6e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|344212119|ref|YP_004796439.1| - 0.00093 19.6 0.0 0.0014 19.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344212119|ref|YP_004796439.1| - 0.0046 16.1 0.0 0.0062 15.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|344212119|ref|YP_004796439.1| - 0.0076 16.7 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF4339 PF14237.1 gi|344212119|ref|YP_004796439.1| - 0.098 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4339) CMAS PF02353.15 gi|344212119|ref|YP_004796439.1| - 0.12 11.4 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CheC PF04509.7 gi|344212120|ref|YP_004796440.1| - 1.4e-14 53.4 1.5 2.5e-14 52.7 0.2 2.0 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|344212120|ref|YP_004796440.1| - 0.00014 21.6 1.1 0.00029 20.6 0.1 2.0 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX AMP-binding PF00501.23 gi|344212121|ref|YP_004796441.1| - 6.4e-85 285.0 0.0 7.4e-85 284.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344212121|ref|YP_004796441.1| - 2.2e-17 63.7 0.0 6.2e-17 62.3 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3108 PF11306.3 gi|344212122|ref|YP_004796442.1| - 0.096 12.3 0.5 0.24 10.9 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3108) Acyl-CoA_dh_1 PF00441.19 gi|344212123|ref|YP_004796443.1| - 2.2e-40 138.2 4.0 2.2e-40 138.2 2.7 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344212123|ref|YP_004796443.1| - 1.4e-21 77.1 3.4 4.4e-21 75.5 2.3 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344212123|ref|YP_004796443.1| - 7.5e-20 70.2 0.5 2.2e-19 68.7 0.4 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|344212123|ref|YP_004796443.1| - 1.5e-14 54.4 5.4 2.7e-14 53.5 3.2 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Adeno_PVIII PF01310.13 gi|344212123|ref|YP_004796443.1| - 0.1 12.4 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus hexon associated protein, protein VIII Cdc6_C PF09079.6 gi|344212124|ref|YP_004796444.1| - 1.7e-16 59.7 0.2 3.5e-16 58.7 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|344212124|ref|YP_004796444.1| - 1.9e-12 47.5 0.0 3.5e-11 43.4 0.0 2.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344212124|ref|YP_004796444.1| - 2.8e-12 46.9 0.0 2.3e-11 43.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|344212124|ref|YP_004796444.1| - 2.5e-07 30.5 0.0 4.4e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|344212124|ref|YP_004796444.1| - 1e-05 25.3 0.0 2.5e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|344212124|ref|YP_004796444.1| - 2.9e-05 24.2 0.0 7.4e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PadR PF03551.9 gi|344212124|ref|YP_004796444.1| - 0.00014 21.6 0.1 0.0003 20.4 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family KAP_NTPase PF07693.9 gi|344212124|ref|YP_004796444.1| - 0.0042 16.1 0.0 0.038 12.9 0.0 1.9 1 1 1 2 2 2 1 KAP family P-loop domain AAA_17 PF13207.1 gi|344212124|ref|YP_004796444.1| - 0.014 16.2 0.0 0.06 14.1 0.0 2.1 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|344212124|ref|YP_004796444.1| - 0.015 14.7 0.0 0.37 10.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Replic_Relax PF13814.1 gi|344212124|ref|YP_004796444.1| - 0.021 14.6 0.1 0.042 13.6 0.0 1.5 1 1 0 1 1 1 0 Replication-relaxation TrmB PF01978.14 gi|344212124|ref|YP_004796444.1| - 0.036 13.7 0.1 0.11 12.2 0.1 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB AAA_23 PF13476.1 gi|344212124|ref|YP_004796444.1| - 0.044 14.0 0.1 0.25 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|344212124|ref|YP_004796444.1| - 0.065 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|344212124|ref|YP_004796444.1| - 0.066 12.9 0.1 0.76 9.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|344212124|ref|YP_004796444.1| - 0.072 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain DEAD PF00270.24 gi|344212124|ref|YP_004796444.1| - 0.077 12.4 0.1 1.2 8.6 0.0 2.1 1 1 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|344212124|ref|YP_004796444.1| - 0.091 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF815 PF05673.8 gi|344212124|ref|YP_004796444.1| - 0.094 11.6 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Lactamase_B PF00753.22 gi|344212125|ref|YP_004796445.1| - 7.5e-15 55.0 5.0 1e-14 54.6 3.5 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344212125|ref|YP_004796445.1| - 2.1e-05 24.1 0.6 3.8e-05 23.3 0.4 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|344212125|ref|YP_004796445.1| - 0.05 13.3 0.5 0.084 12.5 0.3 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DICT PF10069.4 gi|344212127|ref|YP_004796447.1| - 1.5e-29 102.1 0.0 2.3e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems DUF2461 PF09365.5 gi|344212127|ref|YP_004796447.1| - 0.041 13.2 0.0 0.059 12.7 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein (DUF2461) TF_AP-2 PF03299.9 gi|344212127|ref|YP_004796447.1| - 0.11 12.0 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Transcription factor AP-2 POR_N PF01855.14 gi|344212128|ref|YP_004796448.1| - 3.9e-49 167.2 0.2 8.1e-49 166.1 0.2 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|344212128|ref|YP_004796448.1| - 3.4e-45 154.0 0.0 2.6e-44 151.1 0.0 2.2 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|344212128|ref|YP_004796448.1| - 0.0022 17.4 0.1 0.0047 16.4 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|344212129|ref|YP_004796449.1| - 5.9e-31 107.1 0.1 8.8e-31 106.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|344212129|ref|YP_004796449.1| - 0.04 13.8 0.0 0.12 12.3 0.0 1.9 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal HTH_24 PF13412.1 gi|344212130|ref|YP_004796450.1| - 2.6e-15 55.5 0.0 4.1e-15 54.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|344212130|ref|YP_004796450.1| - 7.7e-12 44.7 0.0 1.3e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|344212130|ref|YP_004796450.1| - 7.4e-10 38.2 0.1 1.3e-09 37.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|344212130|ref|YP_004796450.1| - 1.8e-08 33.9 0.0 3.4e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|344212130|ref|YP_004796450.1| - 3e-08 33.3 0.0 5.2e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344212130|ref|YP_004796450.1| - 2.6e-07 30.1 0.0 4.4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|344212130|ref|YP_004796450.1| - 4e-07 29.8 0.3 7.3e-07 29.0 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|344212130|ref|YP_004796450.1| - 2e-06 27.2 0.0 3.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|344212130|ref|YP_004796450.1| - 3.7e-06 26.5 0.0 5.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|344212130|ref|YP_004796450.1| - 3.7e-06 26.4 0.1 5.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|344212130|ref|YP_004796450.1| - 6.9e-06 25.6 0.0 2.8e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.1 gi|344212130|ref|YP_004796450.1| - 9.4e-06 25.6 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|344212130|ref|YP_004796450.1| - 2.2e-05 24.0 0.0 3.7e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|344212130|ref|YP_004796450.1| - 2.5e-05 24.1 0.0 4e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|344212130|ref|YP_004796450.1| - 2.6e-05 23.8 0.3 4.1e-05 23.1 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|344212130|ref|YP_004796450.1| - 7.7e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator FaeA PF04703.7 gi|344212130|ref|YP_004796450.1| - 0.00064 19.8 0.1 0.00096 19.2 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein Sigma70_r4_2 PF08281.7 gi|344212130|ref|YP_004796450.1| - 0.00086 18.7 0.1 0.0015 17.9 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.16 gi|344212130|ref|YP_004796450.1| - 0.0011 18.4 0.1 0.0022 17.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|344212130|ref|YP_004796450.1| - 0.0016 18.4 0.0 0.0038 17.2 0.0 1.7 2 1 1 3 3 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|344212130|ref|YP_004796450.1| - 0.0025 18.0 0.0 0.0048 17.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_6 PF01418.12 gi|344212130|ref|YP_004796450.1| - 0.0025 17.5 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family HTH_29 PF13551.1 gi|344212130|ref|YP_004796450.1| - 0.0028 17.7 0.0 0.004 17.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix LacI PF00356.16 gi|344212130|ref|YP_004796450.1| - 0.003 17.1 0.0 0.011 15.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_10 PF04967.7 gi|344212130|ref|YP_004796450.1| - 0.0043 16.5 0.1 0.009 15.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain TFIIE_alpha PF02002.12 gi|344212130|ref|YP_004796450.1| - 0.0052 16.2 0.0 0.01 15.3 0.0 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit TetR_N PF00440.18 gi|344212130|ref|YP_004796450.1| - 0.02 14.5 0.1 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family EAP30 PF04157.11 gi|344212130|ref|YP_004796450.1| - 0.02 14.0 0.1 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_45 PF14947.1 gi|344212130|ref|YP_004796450.1| - 0.022 14.5 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|344212130|ref|YP_004796450.1| - 0.027 14.3 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF2513 PF10711.4 gi|344212130|ref|YP_004796450.1| - 0.037 14.1 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_1 PF00126.22 gi|344212130|ref|YP_004796450.1| - 0.039 13.6 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.1 gi|344212130|ref|YP_004796450.1| - 0.043 13.3 0.3 0.081 12.4 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344212130|ref|YP_004796450.1| - 0.044 13.1 0.2 0.11 11.8 0.1 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 FeoC PF09012.5 gi|344212130|ref|YP_004796450.1| - 0.044 13.4 0.0 0.068 12.8 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator MerR PF00376.18 gi|344212130|ref|YP_004796450.1| - 0.073 12.6 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein SLH PF00395.15 gi|344212130|ref|YP_004796450.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 S-layer homology domain HTH_Tnp_Tc3_2 PF01498.13 gi|344212130|ref|YP_004796450.1| - 0.074 13.1 0.1 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_30 PF13556.1 gi|344212130|ref|YP_004796450.1| - 0.075 12.6 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF2913 PF11140.3 gi|344212130|ref|YP_004796450.1| - 0.08 12.2 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) HTH_Tnp_1 PF01527.15 gi|344212130|ref|YP_004796450.1| - 0.092 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_Mga PF08280.6 gi|344212130|ref|YP_004796450.1| - 0.093 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_40 PF14493.1 gi|344212130|ref|YP_004796450.1| - 0.098 12.8 0.0 0.14 12.3 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|344212130|ref|YP_004796450.1| - 0.11 12.9 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_17 PF12728.2 gi|344212130|ref|YP_004796450.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_14 PF08484.6 gi|344212130|ref|YP_004796450.1| - 0.13 11.7 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain DHH PF01368.15 gi|344212131|ref|YP_004796451.1| - 1.6e-13 50.4 0.0 3.1e-13 49.6 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|344212131|ref|YP_004796451.1| - 1.1e-12 47.5 0.5 2.7e-12 46.1 0.3 1.7 1 0 0 1 1 1 1 DHHA1 domain TrkA_N PF02254.13 gi|344212131|ref|YP_004796451.1| - 7.7e-12 45.2 0.3 2.9e-11 43.3 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain CBS PF00571.23 gi|344212132|ref|YP_004796452.1| - 2.4e-27 94.4 7.4 7.5e-14 51.2 0.1 2.7 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|344212132|ref|YP_004796452.1| - 9.1e-10 38.5 0.1 2.5e-09 37.1 0.0 1.7 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|344212132|ref|YP_004796452.1| - 2.4e-05 24.2 0.2 0.0003 20.6 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease DUF1015 PF06245.6 gi|344212132|ref|YP_004796452.1| - 0.0085 14.6 0.0 0.012 14.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) NHL PF01436.16 gi|344212132|ref|YP_004796452.1| - 0.27 11.2 2.7 0.37 10.8 0.2 2.5 2 0 0 2 2 2 0 NHL repeat MM_CoA_mutase PF01642.17 gi|344212133|ref|YP_004796453.1| - 5.3e-192 638.5 1.8 6.1e-192 638.3 1.2 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase VKG_Carbox PF05090.9 gi|344212134|ref|YP_004796454.1| - 0.0001 21.2 0.4 0.00013 21.0 0.3 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase DUF1049 PF06305.6 gi|344212135|ref|YP_004796455.1| - 0.0087 15.5 1.3 0.0087 15.5 0.9 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1049) Adeno_E3_CR2 PF02439.10 gi|344212135|ref|YP_004796455.1| - 0.71 9.4 3.1 1.1 8.8 2.2 1.3 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 COX1 PF00115.15 gi|344212136|ref|YP_004796456.1| - 1.1e-159 531.8 56.2 1.1e-159 531.8 39.0 1.4 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF485 PF04341.7 gi|344212137|ref|YP_004796457.1| - 0.0045 16.6 0.6 0.0051 16.5 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF485 DUF3007 PF11460.3 gi|344212137|ref|YP_004796457.1| - 0.025 14.6 0.3 0.031 14.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) NfeD PF01957.13 gi|344212137|ref|YP_004796457.1| - 0.05 13.7 0.1 0.057 13.5 0.1 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4306 PF14154.1 gi|344212137|ref|YP_004796457.1| - 0.12 12.3 0.7 0.25 11.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4306) DUF4131 PF13567.1 gi|344212137|ref|YP_004796457.1| - 0.14 11.5 0.2 0.15 11.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PsbN PF02468.10 gi|344212137|ref|YP_004796457.1| - 4.7 6.9 6.4 6.8 6.3 0.2 2.3 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) DUF3951 PF13131.1 gi|344212137|ref|YP_004796457.1| - 6.3 6.6 9.6 0.6 9.9 2.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) Cyt_c_ox_IV PF12270.3 gi|344212138|ref|YP_004796458.1| - 0.0037 16.9 1.2 0.0037 16.9 0.8 2.5 1 1 2 3 3 3 2 Cytochrome c oxidase subunit IV DUF1469 PF07332.6 gi|344212138|ref|YP_004796458.1| - 0.0038 16.9 9.6 0.0038 16.9 6.7 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1469) IncA PF04156.9 gi|344212139|ref|YP_004796459.1| - 5.6e-06 26.0 10.0 1.1e-05 25.1 6.9 1.4 1 0 0 1 1 1 1 IncA protein CALCOCO1 PF07888.6 gi|344212139|ref|YP_004796459.1| - 7.8e-05 21.1 3.3 7.8e-05 21.1 2.3 1.9 2 0 0 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like Phage_lysis PF03245.8 gi|344212139|ref|YP_004796459.1| - 0.0013 18.6 3.9 0.0013 18.6 2.7 2.2 2 0 0 2 2 1 1 Bacteriophage Rz lysis protein V_ATPase_I PF01496.14 gi|344212139|ref|YP_004796459.1| - 0.002 16.0 2.7 0.0031 15.4 1.9 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Reo_sigmaC PF04582.7 gi|344212139|ref|YP_004796459.1| - 0.0024 17.1 0.3 0.0039 16.4 0.2 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein DivIC PF04977.10 gi|344212139|ref|YP_004796459.1| - 0.0026 17.1 6.0 0.006 16.0 4.1 1.6 1 0 0 1 1 1 1 Septum formation initiator TBPIP PF07106.8 gi|344212139|ref|YP_004796459.1| - 0.003 17.1 6.4 0.0057 16.2 4.5 1.4 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ATG16 PF08614.6 gi|344212139|ref|YP_004796459.1| - 0.0038 17.0 8.2 0.0038 17.0 5.7 2.6 2 1 0 2 2 1 1 Autophagy protein 16 (ATG16) DUF342 PF03961.8 gi|344212139|ref|YP_004796459.1| - 0.029 12.7 0.8 0.044 12.1 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) TMF_DNA_bd PF12329.3 gi|344212139|ref|YP_004796459.1| - 0.041 13.6 15.3 0.085 12.6 10.6 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|344212139|ref|YP_004796459.1| - 0.063 13.6 11.5 0.021 15.1 2.9 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF972) DUF4164 PF13747.1 gi|344212139|ref|YP_004796459.1| - 0.093 12.8 14.5 0.29 11.2 10.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) Spc24 PF08286.6 gi|344212139|ref|YP_004796459.1| - 0.13 11.9 5.4 0.46 10.1 3.8 2.0 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 APG6 PF04111.7 gi|344212139|ref|YP_004796459.1| - 0.17 10.8 8.6 0.39 9.7 6.0 1.5 1 0 0 1 1 1 0 Autophagy protein Apg6 Spc7 PF08317.6 gi|344212139|ref|YP_004796459.1| - 0.22 10.1 7.6 0.34 9.5 5.3 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF4071 PF13281.1 gi|344212139|ref|YP_004796459.1| - 0.34 9.6 2.3 0.62 8.8 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) Cep57_CLD_2 PF14197.1 gi|344212139|ref|YP_004796459.1| - 0.35 10.8 13.1 0.75 9.7 9.0 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF1843 PF08898.5 gi|344212139|ref|YP_004796459.1| - 0.37 10.8 3.9 1.1 9.3 2.5 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1843) bZIP_1 PF00170.16 gi|344212139|ref|YP_004796459.1| - 0.39 10.7 4.5 0.87 9.5 2.7 2.0 1 1 0 1 1 1 0 bZIP transcription factor Atg14 PF10186.4 gi|344212139|ref|YP_004796459.1| - 0.4 9.5 3.2 0.72 8.7 2.2 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 V-SNARE PF05008.10 gi|344212139|ref|YP_004796459.1| - 0.52 10.4 6.4 1.6 8.9 4.4 1.9 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus DUF904 PF06005.7 gi|344212139|ref|YP_004796459.1| - 0.7 10.2 13.3 1.6 9.0 9.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF904) FlaC_arch PF05377.6 gi|344212139|ref|YP_004796459.1| - 4.9 7.1 5.3 42 4.1 3.7 2.4 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) ADIP PF11559.3 gi|344212139|ref|YP_004796459.1| - 5.3 6.9 15.0 0.032 14.1 3.1 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Bap31 PF05529.7 gi|344212139|ref|YP_004796459.1| - 6.7 6.1 5.1 21 4.5 3.6 1.8 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like HTH_24 PF13412.1 gi|344212140|ref|YP_004796460.1| - 0.00023 20.4 0.0 0.00047 19.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|344212140|ref|YP_004796460.1| - 0.0039 16.8 0.0 0.0079 15.9 0.0 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|344212140|ref|YP_004796460.1| - 0.017 14.7 0.1 0.036 13.7 0.0 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB MotA_activ PF09114.5 gi|344212140|ref|YP_004796460.1| - 0.027 14.2 0.0 0.041 13.6 0.0 1.4 1 1 0 1 1 1 0 Transcription factor MotA, activation domain Phage_rep_org_N PF09681.5 gi|344212140|ref|YP_004796460.1| - 0.034 13.7 0.0 0.063 12.8 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_15 PF12324.3 gi|344212140|ref|YP_004796460.1| - 0.041 13.5 0.1 0.26 10.9 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase Ribosomal_S19e PF01090.14 gi|344212140|ref|YP_004796460.1| - 0.047 13.1 0.0 0.32 10.4 0.0 1.9 1 1 0 1 1 1 0 Ribosomal protein S19e HTH_20 PF12840.2 gi|344212140|ref|YP_004796460.1| - 0.063 13.0 0.2 0.19 11.5 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|344212140|ref|YP_004796460.1| - 0.072 12.7 0.2 0.22 11.2 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Adenylsucc_synt PF00709.16 gi|344212141|ref|YP_004796461.1| - 5.2e-144 479.9 0.0 6.1e-144 479.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Trm112p PF03966.11 gi|344212142|ref|YP_004796462.1| - 1e-10 41.7 1.0 1.9e-10 40.9 0.7 1.4 1 1 0 1 1 1 1 Trm112p-like protein DUF3094 PF11293.3 gi|344212143|ref|YP_004796463.1| - 1.3 8.5 5.0 1.8 8.0 2.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3094) SdpI PF13630.1 gi|344212143|ref|YP_004796463.1| - 5.3 6.8 8.3 8.1 6.2 5.7 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family Peptidase_M48 PF01435.13 gi|344212145|ref|YP_004796465.1| - 6.1e-31 107.7 0.0 1.1e-30 106.9 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|344212145|ref|YP_004796465.1| - 4e-07 29.3 0.0 6.4e-06 25.3 0.0 2.0 2 0 0 2 2 2 1 BlaR1 peptidase M56 PQQ_2 PF13360.1 gi|344212146|ref|YP_004796466.1| - 1.5e-21 76.9 2.0 4.4e-09 36.1 1.5 3.1 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|344212146|ref|YP_004796466.1| - 4.3e-14 52.2 15.7 3e-06 27.3 1.2 7.1 6 2 1 7 7 7 3 PQQ-like domain PQQ PF01011.16 gi|344212146|ref|YP_004796466.1| - 1.2e-09 37.2 1.3 5.6e-05 22.4 0.0 4.8 6 0 0 6 6 6 3 PQQ enzyme repeat CbiX PF01903.12 gi|344212147|ref|YP_004796467.1| - 4.4e-42 142.4 0.1 3.5e-20 72.0 0.0 2.3 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|344212147|ref|YP_004796467.1| - 1.2e-06 27.7 0.0 0.00094 18.3 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Fumerase_C PF05683.7 gi|344212147|ref|YP_004796467.1| - 0.095 11.8 0.0 4.9 6.2 0.0 2.2 2 0 0 2 2 2 0 Fumarase C-terminus tRNA-synt_1e PF01406.14 gi|344212150|ref|YP_004796470.1| - 1.3e-103 346.2 0.0 2.9e-102 341.8 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|344212150|ref|YP_004796470.1| - 2.9e-13 49.8 2.8 4.4e-13 49.2 0.8 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|344212150|ref|YP_004796470.1| - 1.7e-11 43.4 0.2 5.6e-05 21.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|344212150|ref|YP_004796470.1| - 3.5e-08 32.5 0.1 8.6e-05 21.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|344212150|ref|YP_004796470.1| - 2.9e-05 22.2 0.1 0.0001 20.4 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|344212150|ref|YP_004796470.1| - 0.0037 15.9 0.0 0.0073 15.0 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.14 gi|344212150|ref|YP_004796470.1| - 0.026 14.0 0.2 0.026 14.0 0.1 2.3 2 0 0 2 2 2 0 UvrB/uvrC motif tRNA-synt_1d PF00750.14 gi|344212150|ref|YP_004796470.1| - 0.043 12.6 0.0 1.3 7.8 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (R) DUF2929 PF11151.3 gi|344212152|ref|YP_004796472.1| - 0.095 12.7 0.4 0.13 12.3 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2929) Poxvirus_B22R_C PF13168.1 gi|344212152|ref|YP_004796472.1| - 0.75 9.0 2.7 0.82 8.9 1.9 1.1 1 0 0 1 1 1 0 Poxvirus B22R protein C-terminal YiaAB PF05360.9 gi|344212152|ref|YP_004796472.1| - 0.97 9.0 6.4 2.1 7.9 0.5 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain PetM PF08041.6 gi|344212152|ref|YP_004796472.1| - 6.6 6.3 6.1 20 4.7 0.5 2.2 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 DUF3040 PF11239.3 gi|344212152|ref|YP_004796472.1| - 8.8 6.4 6.5 11 6.1 4.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CorA PF01544.13 gi|344212153|ref|YP_004796473.1| - 1.3e-72 244.2 0.0 1.6e-72 243.9 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TctA PF01970.11 gi|344212154|ref|YP_004796474.1| - 3.2e-61 207.0 45.1 4e-61 206.6 31.3 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family HTH_20 PF12840.2 gi|344212155|ref|YP_004796475.1| - 4e-12 45.7 0.1 6e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344212155|ref|YP_004796475.1| - 6.8e-09 35.2 0.0 1e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344212155|ref|YP_004796475.1| - 2.6e-07 30.1 0.0 4.3e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|344212155|ref|YP_004796475.1| - 4.6e-07 30.0 0.1 7.4e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|344212155|ref|YP_004796475.1| - 2.5e-06 27.1 0.0 3.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344212155|ref|YP_004796475.1| - 1e-05 25.1 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|344212155|ref|YP_004796475.1| - 0.00013 21.4 0.1 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|344212155|ref|YP_004796475.1| - 0.00013 21.3 0.0 0.00018 20.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.1 gi|344212155|ref|YP_004796475.1| - 0.00014 21.7 0.0 0.00021 21.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|344212155|ref|YP_004796475.1| - 0.00023 20.9 0.0 0.00033 20.4 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC GntR PF00392.16 gi|344212155|ref|YP_004796475.1| - 0.0078 15.6 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family PadR PF03551.9 gi|344212155|ref|YP_004796475.1| - 0.014 15.1 0.4 0.032 13.9 0.2 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_24 PF13412.1 gi|344212155|ref|YP_004796475.1| - 0.019 14.3 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2513 PF10711.4 gi|344212155|ref|YP_004796475.1| - 0.037 14.1 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HxlR PF01638.12 gi|344212155|ref|YP_004796475.1| - 0.058 13.0 0.0 0.073 12.7 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF387 PF04079.11 gi|344212155|ref|YP_004796475.1| - 0.13 11.6 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) MoeA_N PF03453.12 gi|344212157|ref|YP_004796477.1| - 6.9e-45 152.3 3.9 1.3e-44 151.4 2.7 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|344212157|ref|YP_004796477.1| - 3.8e-29 100.9 0.3 6.8e-29 100.1 0.2 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|344212157|ref|YP_004796477.1| - 2.1e-18 66.0 0.1 2.1e-18 66.0 0.1 3.0 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|344212158|ref|YP_004796478.1| - 8.1e-49 165.0 4.2 1.3e-48 164.4 2.9 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|344212158|ref|YP_004796478.1| - 1.7e-27 95.6 0.0 3.2e-27 94.7 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|344212158|ref|YP_004796478.1| - 2.1e-27 95.3 0.0 9.2e-27 93.2 0.0 2.1 1 1 0 1 1 1 1 PBP superfamily domain MoeA_C PF03454.10 gi|344212158|ref|YP_004796478.1| - 1.7e-16 59.9 0.2 1e-15 57.4 0.0 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.2 gi|344212158|ref|YP_004796478.1| - 0.067 12.6 0.0 6.2 6.1 0.0 2.4 1 1 1 2 2 2 0 PBP superfamily domain Fe-ADH PF00465.14 gi|344212159|ref|YP_004796479.1| - 3e-64 216.9 1.4 3.3e-64 216.8 1.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|344212159|ref|YP_004796479.1| - 2.6e-09 36.7 0.0 7e-08 32.0 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Pyr_redox_2 PF07992.9 gi|344212160|ref|YP_004796480.1| - 2e-16 60.5 0.0 3.7e-16 59.6 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344212160|ref|YP_004796480.1| - 1.6e-08 34.8 0.5 8e-07 29.3 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344212160|ref|YP_004796480.1| - 3.3e-05 24.0 0.4 0.18 11.8 0.0 3.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|344212160|ref|YP_004796480.1| - 0.0034 16.9 0.5 2.8 7.4 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|344212160|ref|YP_004796480.1| - 0.0064 16.2 1.2 8.8 6.0 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding ThuA PF06283.6 gi|344212161|ref|YP_004796481.1| - 9.3e-43 146.4 0.2 1.1e-42 146.2 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation HxlR PF01638.12 gi|344212162|ref|YP_004796482.1| - 6.5e-29 99.4 0.0 7.8e-29 99.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix TrmB PF01978.14 gi|344212162|ref|YP_004796482.1| - 0.0057 16.3 0.0 0.0083 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|344212162|ref|YP_004796482.1| - 0.0069 16.1 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|344212162|ref|YP_004796482.1| - 0.049 13.4 0.0 0.077 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF505 PF04458.7 gi|344212162|ref|YP_004796482.1| - 0.066 11.3 0.0 0.077 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_34 PF13601.1 gi|344212162|ref|YP_004796482.1| - 0.087 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain YjcQ PF09639.5 gi|344212162|ref|YP_004796482.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.4 1 1 0 1 1 1 0 YjcQ protein CoA_binding_2 PF13380.1 gi|344212163|ref|YP_004796483.1| - 7.5e-35 119.5 0.0 9e-35 119.3 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|344212163|ref|YP_004796483.1| - 5.1e-05 23.6 0.0 7.1e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain DUF393 PF04134.7 gi|344212164|ref|YP_004796484.1| - 2.7e-12 47.7 0.1 3.1e-12 47.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 BolA PF01722.13 gi|344212165|ref|YP_004796485.1| - 2.3e-19 69.1 0.0 2.6e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Glutaredoxin PF00462.19 gi|344212166|ref|YP_004796486.1| - 9.8e-16 57.4 0.0 1.7e-15 56.7 0.0 1.4 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.1 gi|344212166|ref|YP_004796486.1| - 0.00036 20.7 0.0 0.00054 20.1 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|344212166|ref|YP_004796486.1| - 0.065 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 ArsC family Beta-Casp PF10996.3 gi|344212168|ref|YP_004796488.1| - 1.4e-30 105.8 0.0 3.4e-30 104.5 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|344212168|ref|YP_004796488.1| - 3.6e-21 75.7 1.0 6.2e-21 74.9 0.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|344212168|ref|YP_004796488.1| - 5.6e-13 48.4 0.0 2.2e-12 46.5 0.0 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|344212168|ref|YP_004796488.1| - 3.7e-12 46.1 0.2 3.2e-11 43.1 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|344212168|ref|YP_004796488.1| - 4.7e-06 26.0 0.0 7.3e-05 22.2 0.0 2.4 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|344212168|ref|YP_004796488.1| - 0.00021 20.8 0.0 0.00058 19.4 0.0 1.7 1 0 0 1 1 1 1 KH domain Lactamase_B_3 PF13483.1 gi|344212168|ref|YP_004796488.1| - 0.00065 19.4 0.0 0.0015 18.2 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|344212168|ref|YP_004796488.1| - 0.0092 15.6 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 KH domain DHH PF01368.15 gi|344212169|ref|YP_004796489.1| - 2.7e-16 59.5 0.1 4.1e-16 58.9 0.1 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|344212169|ref|YP_004796489.1| - 2.1e-11 43.3 0.2 5e-11 42.1 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain Sulfate_transp PF00916.15 gi|344212170|ref|YP_004796490.1| - 1.1e-06 27.9 9.5 1.1e-06 27.9 6.6 1.8 1 1 0 1 1 1 1 Sulfate transporter family Mob_synth_C PF06463.8 gi|344212171|ref|YP_004796491.1| - 5.1e-32 110.2 0.0 1e-31 109.2 0.0 1.5 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|344212171|ref|YP_004796491.1| - 7.9e-22 78.1 0.0 1.4e-21 77.4 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|344212171|ref|YP_004796491.1| - 1.5e-08 34.7 0.0 3.4e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|344212171|ref|YP_004796491.1| - 1.2e-07 31.8 0.0 2.3e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Imm49 PF15660.1 gi|344212171|ref|YP_004796491.1| - 0.013 15.5 0.0 0.029 14.3 0.0 1.6 1 0 0 1 1 1 0 Immunity protein 49 Cytochrom_C PF00034.16 gi|344212171|ref|YP_004796491.1| - 0.026 15.3 0.0 9.1 7.1 0.0 2.7 2 0 0 2 2 2 0 Cytochrome c NTP_transf_3 PF12804.2 gi|344212173|ref|YP_004796493.1| - 1.2e-33 116.4 0.3 1.4e-33 116.2 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|344212173|ref|YP_004796493.1| - 0.0013 18.3 0.0 0.004 16.8 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAM92 PF06730.6 gi|344212173|ref|YP_004796493.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 FAM92 protein AFOR_C PF01314.13 gi|344212174|ref|YP_004796494.1| - 2.2e-97 326.1 0.1 5.2e-97 324.9 0.0 1.6 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|344212174|ref|YP_004796494.1| - 3.5e-62 209.3 0.1 4.9e-62 208.8 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain MgtE PF01769.11 gi|344212176|ref|YP_004796496.1| - 0.003 17.8 1.8 0.0032 17.7 1.3 1.0 1 0 0 1 1 1 1 Divalent cation transporter ABC2_membrane_3 PF12698.2 gi|344212176|ref|YP_004796496.1| - 0.083 11.9 3.2 0.095 11.7 2.2 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1129 PF06570.6 gi|344212176|ref|YP_004796496.1| - 0.12 11.6 0.3 0.15 11.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF4239 PF14023.1 gi|344212176|ref|YP_004796496.1| - 0.4 9.9 3.7 0.49 9.7 2.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) DUF3325 PF11804.3 gi|344212176|ref|YP_004796496.1| - 0.46 10.4 5.5 0.55 10.1 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) TcpE PF12648.2 gi|344212176|ref|YP_004796496.1| - 0.61 10.2 4.3 0.99 9.5 3.0 1.5 1 1 0 1 1 1 0 TcpE family ABC2_membrane_2 PF12679.2 gi|344212176|ref|YP_004796496.1| - 1 8.1 5.7 1.2 7.9 4.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein Zn-ribbon_8 PF09723.5 gi|344212177|ref|YP_004796497.1| - 0.0025 17.7 2.3 0.0034 17.2 1.6 1.2 1 0 0 1 1 1 1 Zinc ribbon domain RNHCP PF12647.2 gi|344212177|ref|YP_004796497.1| - 0.0038 17.0 0.1 0.0038 17.0 0.1 1.0 1 0 0 1 1 1 1 RNHCP domain zf-C3HC4_3 PF13920.1 gi|344212177|ref|YP_004796497.1| - 0.0079 15.8 0.3 0.0089 15.6 0.2 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|344212177|ref|YP_004796497.1| - 0.0094 15.7 0.6 0.012 15.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|344212177|ref|YP_004796497.1| - 0.012 14.8 1.2 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|344212177|ref|YP_004796497.1| - 0.019 14.2 0.6 0.11 11.7 0.0 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RRN7 PF11781.3 gi|344212177|ref|YP_004796497.1| - 0.021 14.3 2.6 0.19 11.2 0.2 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 HypA PF01155.14 gi|344212177|ref|YP_004796497.1| - 0.029 14.0 0.3 0.029 14.0 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-dskA_traR PF01258.12 gi|344212177|ref|YP_004796497.1| - 0.029 14.0 3.2 0.19 11.4 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.1 gi|344212177|ref|YP_004796497.1| - 0.12 12.6 3.2 1.1 9.6 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RING_5 PF14634.1 gi|344212177|ref|YP_004796497.1| - 0.13 12.0 1.2 0.2 11.4 0.8 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Opy2 PF09463.5 gi|344212177|ref|YP_004796497.1| - 0.19 11.8 2.6 8.6 6.5 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DUF329 PF03884.9 gi|344212177|ref|YP_004796497.1| - 0.21 11.1 2.8 0.69 9.5 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Auto_anti-p27 PF06677.7 gi|344212177|ref|YP_004796497.1| - 0.65 9.8 2.5 3.5 7.4 1.7 1.9 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TFIIS_C PF01096.13 gi|344212177|ref|YP_004796497.1| - 0.93 9.1 3.6 4.1 7.1 0.1 2.3 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2379 PF09543.5 gi|344212178|ref|YP_004796498.1| - 0.05 13.5 1.8 0.16 11.8 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) Dyp_perox PF04261.7 gi|344212180|ref|YP_004796500.1| - 0.00021 20.1 0.0 0.00035 19.4 0.0 1.5 1 1 0 1 1 1 1 Dyp-type peroxidase family MpPF26 PF07666.6 gi|344212182|ref|YP_004796502.1| - 0.64 9.9 4.3 0.81 9.5 3.0 1.0 1 0 0 1 1 1 0 M penetrans paralogue family 26 DUF4282 PF14110.1 gi|344212182|ref|YP_004796502.1| - 7.1 6.8 7.5 9.5 6.4 5.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) NnrU PF07298.6 gi|344212183|ref|YP_004796503.1| - 0.066 12.5 2.5 0.075 12.4 1.7 1.0 1 0 0 1 1 1 0 NnrU protein NicO PF03824.11 gi|344212183|ref|YP_004796503.1| - 0.083 12.1 3.4 0.096 11.9 2.3 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein DUF3789 PF12664.2 gi|344212183|ref|YP_004796503.1| - 0.15 11.3 1.8 0.35 10.2 1.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3789) Pox_I5 PF04713.7 gi|344212183|ref|YP_004796503.1| - 0.35 10.5 4.5 0.37 10.5 2.5 1.5 1 1 0 1 1 1 0 Poxvirus protein I5 Nitrate_red_del PF02613.10 gi|344212184|ref|YP_004796504.1| - 9.4e-21 74.0 0.2 1.3e-20 73.6 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit FlpD PF02662.11 gi|344212185|ref|YP_004796505.1| - 5.3e-27 93.9 0.0 1.2e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|344212185|ref|YP_004796505.1| - 7.5e-17 61.4 32.2 9.2e-09 35.5 7.7 5.4 4 1 1 5 5 5 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344212185|ref|YP_004796505.1| - 3.5e-13 49.6 32.6 9.5e-06 25.7 6.9 5.5 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344212185|ref|YP_004796505.1| - 2.6e-12 47.2 24.4 0.0013 19.4 0.5 6.6 6 0 0 6 6 6 3 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|344212185|ref|YP_004796505.1| - 3.7e-12 45.3 50.9 0.00011 21.6 2.9 7.6 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|344212185|ref|YP_004796505.1| - 3e-11 42.9 36.0 1.7e-05 24.5 4.5 4.6 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|344212185|ref|YP_004796505.1| - 1.9e-07 31.3 24.3 0.0078 16.5 0.2 6.2 6 1 1 7 7 7 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|344212185|ref|YP_004796505.1| - 2.2e-07 30.4 55.4 8.8e-05 22.2 1.8 7.4 7 1 0 7 7 7 4 4Fe-4S binding domain Fer4_8 PF13183.1 gi|344212185|ref|YP_004796505.1| - 7.3e-07 29.1 33.0 0.084 12.9 2.3 5.6 3 2 4 7 7 7 5 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|344212185|ref|YP_004796505.1| - 2.5e-05 24.6 35.2 0.24 11.8 1.4 7.0 6 2 1 7 7 7 4 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344212185|ref|YP_004796505.1| - 2.8e-05 23.8 38.2 0.00045 20.0 5.3 5.8 5 2 1 7 7 7 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|344212185|ref|YP_004796505.1| - 4e-05 23.4 14.6 0.006 16.4 1.1 3.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344212185|ref|YP_004796505.1| - 0.0029 17.4 3.5 0.0029 17.4 2.4 6.6 7 0 0 7 7 6 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|344212185|ref|YP_004796505.1| - 0.25 11.7 53.0 0.11 12.9 2.9 7.4 8 0 0 8 8 8 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|344212185|ref|YP_004796505.1| - 0.93 10.1 30.1 0.41 11.2 0.4 6.3 6 0 0 6 6 6 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|344212186|ref|YP_004796506.1| - 3.5e-36 124.8 3.0 3.5e-35 121.5 2.1 2.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|344212186|ref|YP_004796506.1| - 2.8e-18 65.7 0.1 6.5e-18 64.5 0.1 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|344212186|ref|YP_004796506.1| - 2e-15 56.3 0.4 3.7e-15 55.4 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|344212186|ref|YP_004796506.1| - 7.5 6.8 10.4 0.026 14.5 0.8 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|344212187|ref|YP_004796507.1| - 1.4e-21 76.2 14.3 3.2e-21 75.0 7.4 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344212187|ref|YP_004796507.1| - 5.8e-14 52.2 23.6 7.2e-07 29.4 5.8 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344212187|ref|YP_004796507.1| - 1.8e-12 47.3 27.6 6.2e-08 32.7 5.5 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344212187|ref|YP_004796507.1| - 1.3e-09 37.7 27.9 4.1e-05 23.2 6.6 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|344212187|ref|YP_004796507.1| - 1.1e-07 31.7 22.9 4e-05 23.5 4.4 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344212187|ref|YP_004796507.1| - 2.5e-07 29.9 39.1 1.8e-06 27.3 1.0 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|344212187|ref|YP_004796507.1| - 9.3e-07 28.4 36.9 0.00056 19.6 1.0 4.9 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|344212187|ref|YP_004796507.1| - 1.3e-06 28.5 39.3 0.012 16.1 2.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|344212187|ref|YP_004796507.1| - 2.2e-06 27.2 10.7 0.00061 19.5 2.0 4.5 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|344212187|ref|YP_004796507.1| - 2.9e-05 23.8 27.2 0.00062 19.5 7.4 3.9 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344212187|ref|YP_004796507.1| - 0.00011 22.8 24.3 0.39 11.4 2.8 4.5 3 2 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|344212187|ref|YP_004796507.1| - 0.00014 22.1 26.2 0.0049 17.1 5.3 3.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|344212187|ref|YP_004796507.1| - 0.0008 19.5 2.3 0.0008 19.5 1.6 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|344212187|ref|YP_004796507.1| - 0.016 15.6 20.3 0.34 11.3 1.0 3.7 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|344212187|ref|YP_004796507.1| - 0.22 12.1 25.1 0.093 13.3 5.2 3.4 1 1 2 3 3 3 0 4Fe-4S single cluster domain Cytochrom_B_N_2 PF13631.1 gi|344212188|ref|YP_004796508.1| - 0.00086 19.1 0.2 0.0011 18.8 0.2 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB BTP PF05232.7 gi|344212188|ref|YP_004796508.1| - 0.0068 16.1 0.5 0.071 12.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial Transmembrane Pair family Holin_BlyA PF05102.7 gi|344212188|ref|YP_004796508.1| - 0.074 12.7 0.2 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 holin, BlyA family Cytochrom_B_N PF00033.14 gi|344212189|ref|YP_004796509.1| - 2.8e-30 105.0 12.8 1.9e-28 99.1 10.0 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|344212189|ref|YP_004796509.1| - 3.3e-22 78.7 10.5 1e-20 73.9 8.2 2.0 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM_3 PF13706.1 gi|344212189|ref|YP_004796509.1| - 0.2 11.1 13.4 14 5.1 1.0 4.4 3 1 0 3 3 3 0 PepSY-associated TM helix COX14 PF14880.1 gi|344212189|ref|YP_004796509.1| - 1.2 8.8 0.0 1.2 8.8 0.0 2.8 3 0 0 3 3 3 0 Cytochrome oxidase c assembly Mitoc_L55 PF09776.4 gi|344212190|ref|YP_004796510.1| - 0.14 11.7 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L55 Mit_proteolip PF08039.6 gi|344212191|ref|YP_004796511.1| - 0.043 13.7 0.0 0.049 13.6 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial proteolipid Phage_holin_5 PF06946.6 gi|344212191|ref|YP_004796511.1| - 0.11 12.6 0.6 0.12 12.5 0.4 1.1 1 0 0 1 1 1 0 Phage holin Presenilin PF01080.12 gi|344212191|ref|YP_004796511.1| - 0.6 8.8 3.5 0.61 8.8 2.4 1.0 1 0 0 1 1 1 0 Presenilin DUF2721 PF11026.3 gi|344212191|ref|YP_004796511.1| - 0.89 9.2 5.5 0.98 9.0 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) ABC2_membrane_2 PF12679.2 gi|344212191|ref|YP_004796511.1| - 1.3 7.8 6.3 1.4 7.7 4.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein IclR PF01614.13 gi|344212192|ref|YP_004796512.1| - 2.9e-37 127.2 0.1 4.3e-37 126.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344212192|ref|YP_004796512.1| - 2.2e-13 49.5 0.0 7.5e-13 47.8 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344212192|ref|YP_004796512.1| - 7.7e-06 25.1 0.0 1.4e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|344212192|ref|YP_004796512.1| - 1e-05 25.2 0.0 3e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|344212192|ref|YP_004796512.1| - 2.8e-05 23.7 0.0 4.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344212192|ref|YP_004796512.1| - 4.1e-05 23.1 0.0 0.0001 21.8 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344212192|ref|YP_004796512.1| - 4.8e-05 22.9 0.0 0.00011 21.8 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|344212192|ref|YP_004796512.1| - 7.5e-05 22.5 0.0 0.00018 21.3 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|344212192|ref|YP_004796512.1| - 0.00034 20.2 0.0 0.00074 19.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|344212192|ref|YP_004796512.1| - 0.0009 18.8 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|344212192|ref|YP_004796512.1| - 0.0028 17.2 0.0 0.0057 16.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|344212192|ref|YP_004796512.1| - 0.0031 17.3 0.0 0.0088 15.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|344212192|ref|YP_004796512.1| - 0.02 14.9 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Phage_CI_repr PF07022.8 gi|344212192|ref|YP_004796512.1| - 0.021 14.9 0.0 0.029 14.4 0.0 1.4 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain GntR PF00392.16 gi|344212192|ref|YP_004796512.1| - 0.046 13.1 0.1 0.38 10.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_40 PF14493.1 gi|344212192|ref|YP_004796512.1| - 0.056 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|344212192|ref|YP_004796512.1| - 0.058 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_DeoR PF08220.7 gi|344212192|ref|YP_004796512.1| - 0.062 12.8 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|344212192|ref|YP_004796512.1| - 0.071 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|344212192|ref|YP_004796512.1| - 0.09 12.3 0.0 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|344212192|ref|YP_004796512.1| - 0.13 11.7 0.2 0.34 10.3 0.0 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 FAA_hydrolase PF01557.13 gi|344212193|ref|YP_004796513.1| - 1.2e-28 100.0 0.0 2e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TrkA_C PF02080.16 gi|344212193|ref|YP_004796513.1| - 0.025 14.1 0.2 0.065 12.8 0.1 1.7 1 0 0 1 1 1 0 TrkA-C domain Methyltransf_11 PF08241.7 gi|344212194|ref|YP_004796514.1| - 5e-12 46.1 0.1 7.9e-12 45.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212194|ref|YP_004796514.1| - 6e-10 39.0 0.0 7.1e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212194|ref|YP_004796514.1| - 6.8e-10 39.2 0.1 1.1e-09 38.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212194|ref|YP_004796514.1| - 5.2e-08 32.6 0.1 7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344212194|ref|YP_004796514.1| - 5.8e-08 33.2 0.4 9.1e-08 32.6 0.3 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344212194|ref|YP_004796514.1| - 4.3e-07 30.3 0.2 7.1e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212194|ref|YP_004796514.1| - 9.9e-07 28.8 0.5 1.2e-06 28.5 0.4 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344212194|ref|YP_004796514.1| - 2.8e-05 23.5 0.1 3.9e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|344212194|ref|YP_004796514.1| - 0.00026 20.4 0.0 0.0004 19.8 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TehB PF03848.9 gi|344212194|ref|YP_004796514.1| - 0.00027 20.1 0.1 0.00044 19.4 0.0 1.4 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.6 gi|344212194|ref|YP_004796514.1| - 0.0035 16.0 0.0 0.0043 15.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.1 gi|344212194|ref|YP_004796514.1| - 0.024 15.4 0.2 0.038 14.8 0.1 1.6 1 1 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|344212194|ref|YP_004796514.1| - 0.026 13.5 0.2 0.033 13.1 0.1 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.8 gi|344212194|ref|YP_004796514.1| - 0.06 12.4 0.3 0.079 12.0 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Pox_MCEL PF03291.11 gi|344212194|ref|YP_004796514.1| - 0.11 11.3 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme AMP-binding PF00501.23 gi|344212195|ref|YP_004796515.1| - 7.8e-83 278.1 0.0 9.4e-83 277.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344212195|ref|YP_004796515.1| - 3.7e-19 69.4 0.9 1.1e-18 67.9 0.3 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Dpy-30 PF05186.8 gi|344212195|ref|YP_004796515.1| - 0.039 13.4 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 Dpy-30 motif DUF3147 PF11345.3 gi|344212196|ref|YP_004796516.1| - 0.27 11.2 5.5 0.19 11.7 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3147) MARVEL PF01284.18 gi|344212196|ref|YP_004796516.1| - 0.29 10.9 3.8 0.42 10.4 2.7 1.3 1 0 0 1 1 1 0 Membrane-associating domain DUF3561 PF12084.3 gi|344212196|ref|YP_004796516.1| - 0.84 9.5 4.4 0.67 9.8 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) DUF745 PF05335.8 gi|344212197|ref|YP_004796517.1| - 7.1e-05 22.4 2.3 9.2e-05 22.0 1.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF745) Med9 PF07544.8 gi|344212197|ref|YP_004796517.1| - 9.8e-05 22.0 0.3 0.00013 21.6 0.2 1.3 1 0 0 1 1 1 1 RNA polymerase II transcription mediator complex subunit 9 RmuC PF02646.11 gi|344212197|ref|YP_004796517.1| - 0.00077 18.3 0.6 0.00083 18.2 0.4 1.0 1 0 0 1 1 1 1 RmuC family SNARE PF05739.14 gi|344212197|ref|YP_004796517.1| - 0.0013 18.3 1.2 0.0023 17.5 0.7 1.5 1 1 0 1 1 1 1 SNARE domain DegS PF05384.6 gi|344212197|ref|YP_004796517.1| - 0.0018 17.5 0.8 0.0019 17.4 0.6 1.1 1 0 0 1 1 1 1 Sensor protein DegS BLOC1_2 PF10046.4 gi|344212197|ref|YP_004796517.1| - 0.0029 17.7 0.9 0.004 17.2 0.7 1.3 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prominin PF05478.6 gi|344212197|ref|YP_004796517.1| - 0.0031 15.1 0.7 0.0035 14.9 0.5 1.0 1 0 0 1 1 1 1 Prominin Laminin_II PF06009.7 gi|344212197|ref|YP_004796517.1| - 0.0036 17.0 2.1 0.0043 16.8 1.0 1.4 1 1 0 1 1 1 1 Laminin Domain II Phage_GP20 PF06810.6 gi|344212197|ref|YP_004796517.1| - 0.004 16.6 3.2 0.0049 16.3 2.2 1.1 1 0 0 1 1 1 1 Phage minor structural protein GP20 CENP-F_leu_zip PF10473.4 gi|344212197|ref|YP_004796517.1| - 0.0046 16.8 1.9 0.0052 16.6 1.3 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|344212197|ref|YP_004796517.1| - 0.0047 14.7 4.0 0.0052 14.5 2.7 1.0 1 0 0 1 1 1 1 Myosin tail DASH_Spc34 PF08657.5 gi|344212197|ref|YP_004796517.1| - 0.0057 16.3 0.9 0.0064 16.1 0.6 1.1 1 0 0 1 1 1 1 DASH complex subunit Spc34 EAP30 PF04157.11 gi|344212197|ref|YP_004796517.1| - 0.0064 15.6 0.6 0.0075 15.4 0.4 1.1 1 0 0 1 1 1 1 EAP30/Vps36 family Filament PF00038.16 gi|344212197|ref|YP_004796517.1| - 0.0064 16.0 2.3 0.0073 15.8 1.6 1.0 1 0 0 1 1 1 1 Intermediate filament protein PspA_IM30 PF04012.7 gi|344212197|ref|YP_004796517.1| - 0.007 15.7 3.2 0.0083 15.5 2.2 1.2 1 0 0 1 1 1 1 PspA/IM30 family IncA PF04156.9 gi|344212197|ref|YP_004796517.1| - 0.0083 15.7 0.5 0.0096 15.5 0.3 1.1 1 0 0 1 1 1 1 IncA protein MCPsignal PF00015.16 gi|344212197|ref|YP_004796517.1| - 0.01 15.3 1.7 0.013 15.0 1.2 1.2 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.7 gi|344212197|ref|YP_004796517.1| - 0.012 15.8 0.9 0.018 15.2 0.6 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|344212197|ref|YP_004796517.1| - 0.012 14.5 0.5 0.013 14.5 0.4 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|344212197|ref|YP_004796517.1| - 0.013 14.1 0.6 0.014 14.1 0.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Spc24 PF08286.6 gi|344212197|ref|YP_004796517.1| - 0.013 15.1 1.7 0.016 14.9 1.1 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Reo_sigmaC PF04582.7 gi|344212197|ref|YP_004796517.1| - 0.014 14.5 0.7 0.014 14.5 0.5 1.0 1 0 0 1 1 1 0 Reovirus sigma C capsid protein TPR_MLP1_2 PF07926.7 gi|344212197|ref|YP_004796517.1| - 0.016 14.9 1.7 0.02 14.6 1.2 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF3373 PF11853.3 gi|344212197|ref|YP_004796517.1| - 0.017 13.7 0.5 0.02 13.4 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) ADIP PF11559.3 gi|344212197|ref|YP_004796517.1| - 0.021 14.7 1.2 0.028 14.3 0.8 1.1 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF869 PF05911.6 gi|344212197|ref|YP_004796517.1| - 0.023 12.9 4.2 0.023 12.9 2.9 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF3450 PF11932.3 gi|344212197|ref|YP_004796517.1| - 0.023 13.9 0.8 0.026 13.8 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) FlaC_arch PF05377.6 gi|344212197|ref|YP_004796517.1| - 0.023 14.5 1.2 0.092 12.6 0.7 2.0 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) HR1 PF02185.11 gi|344212197|ref|YP_004796517.1| - 0.023 14.4 1.7 0.027 14.1 0.3 1.7 1 1 1 2 2 2 0 Hr1 repeat Bacillus_HBL PF05791.6 gi|344212197|ref|YP_004796517.1| - 0.026 13.8 0.3 0.032 13.6 0.2 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Syntaxin-6_N PF09177.6 gi|344212197|ref|YP_004796517.1| - 0.027 14.8 0.6 0.04 14.3 0.4 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal AKNA PF12443.3 gi|344212197|ref|YP_004796517.1| - 0.03 14.3 0.1 0.04 13.9 0.1 1.3 1 0 0 1 1 1 0 AT-hook-containing transcription factor YPEB PF14620.1 gi|344212197|ref|YP_004796517.1| - 0.031 13.2 0.2 0.031 13.2 0.1 1.1 1 0 0 1 1 1 0 YpeB sporulation DivIVA PF05103.8 gi|344212197|ref|YP_004796517.1| - 0.035 14.1 5.5 0.039 13.9 3.8 1.1 1 0 0 1 1 1 0 DivIVA protein Microtub_assoc PF07989.6 gi|344212197|ref|YP_004796517.1| - 0.036 13.8 1.7 0.054 13.3 1.2 1.4 1 0 0 1 1 1 0 Microtubule associated SLT_2 PF13406.1 gi|344212197|ref|YP_004796517.1| - 0.037 12.9 0.1 0.041 12.7 0.1 1.0 1 0 0 1 1 1 0 Transglycosylase SLT domain DUF2730 PF10805.3 gi|344212197|ref|YP_004796517.1| - 0.04 13.6 0.7 0.049 13.3 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF1664 PF07889.7 gi|344212197|ref|YP_004796517.1| - 0.041 13.6 1.4 0.075 12.8 0.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) ArsR PF09824.4 gi|344212197|ref|YP_004796517.1| - 0.047 13.0 0.2 0.06 12.6 0.2 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator ATG16 PF08614.6 gi|344212197|ref|YP_004796517.1| - 0.047 13.5 1.9 0.057 13.2 1.3 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) TBPIP PF07106.8 gi|344212197|ref|YP_004796517.1| - 0.047 13.2 0.8 0.05 13.1 0.5 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FliD_C PF07195.7 gi|344212197|ref|YP_004796517.1| - 0.052 12.8 0.3 0.066 12.5 0.2 1.2 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Ax_dynein_light PF10211.4 gi|344212197|ref|YP_004796517.1| - 0.052 13.3 1.8 0.06 13.1 1.2 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain DUF2666 PF10869.3 gi|344212197|ref|YP_004796517.1| - 0.055 13.5 0.9 0.063 13.3 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2666) DUF948 PF06103.6 gi|344212197|ref|YP_004796517.1| - 0.056 13.3 2.0 0.14 12.0 1.1 1.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TMF_DNA_bd PF12329.3 gi|344212197|ref|YP_004796517.1| - 0.057 13.2 5.5 0.12 12.2 3.8 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|344212197|ref|YP_004796517.1| - 0.06 13.7 0.5 0.065 13.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Seryl_tRNA_N PF02403.17 gi|344212197|ref|YP_004796517.1| - 0.064 13.2 2.5 0.11 12.5 0.7 1.8 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain EcoR124_C PF12008.3 gi|344212197|ref|YP_004796517.1| - 0.066 12.3 0.6 0.077 12.1 0.4 1.1 1 0 0 1 1 1 0 Type I restriction and modification enzyme - subunit R C terminal Ku_C PF03730.9 gi|344212197|ref|YP_004796517.1| - 0.078 13.5 0.2 0.11 13.0 0.1 1.3 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm EMP24_GP25L PF01105.19 gi|344212197|ref|YP_004796517.1| - 0.083 12.6 0.3 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF484 PF04340.7 gi|344212197|ref|YP_004796517.1| - 0.083 12.3 0.6 0.094 12.1 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF484 Herpes_UL6 PF01763.11 gi|344212197|ref|YP_004796517.1| - 0.091 10.9 0.6 0.09 10.9 0.4 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like COG2 PF06148.6 gi|344212197|ref|YP_004796517.1| - 0.095 12.5 0.7 0.11 12.3 0.5 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.7 gi|344212197|ref|YP_004796517.1| - 0.097 12.4 0.4 0.11 12.3 0.3 1.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1202 PF06717.6 gi|344212197|ref|YP_004796517.1| - 0.11 11.7 0.7 0.13 11.4 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1202) Striatin PF08232.7 gi|344212197|ref|YP_004796517.1| - 0.11 12.7 1.1 0.15 12.3 0.7 1.3 1 1 0 1 1 1 0 Striatin family Ribosomal_L29 PF00831.18 gi|344212197|ref|YP_004796517.1| - 0.15 11.7 2.2 0.39 10.4 0.5 2.1 1 1 1 2 2 2 0 Ribosomal L29 protein UPF0242 PF06785.6 gi|344212197|ref|YP_004796517.1| - 0.15 10.6 1.3 0.17 10.5 0.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Mnd1 PF03962.10 gi|344212197|ref|YP_004796517.1| - 0.16 11.6 1.6 0.16 11.6 1.1 1.1 1 0 0 1 1 1 0 Mnd1 family RTBV_P46 PF06216.6 gi|344212197|ref|YP_004796517.1| - 0.16 10.8 0.4 0.18 10.5 0.3 1.0 1 0 0 1 1 1 0 Rice tungro bacilliform virus P46 protein Phage_lysis PF03245.8 gi|344212197|ref|YP_004796517.1| - 0.16 11.9 2.9 0.25 11.3 2.0 1.4 1 1 0 1 1 1 0 Bacteriophage Rz lysis protein DUF904 PF06005.7 gi|344212197|ref|YP_004796517.1| - 0.16 12.2 2.7 0.23 11.7 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Cep57_CLD_2 PF14197.1 gi|344212197|ref|YP_004796517.1| - 0.16 11.9 2.6 0.22 11.4 1.3 1.6 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF550 PF04447.7 gi|344212197|ref|YP_004796517.1| - 0.16 11.5 0.7 0.19 11.3 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF550) Swi5 PF07061.6 gi|344212197|ref|YP_004796517.1| - 0.18 11.6 1.6 2.7 7.8 1.1 2.3 1 1 0 1 1 1 0 Swi5 ScdA_N PF04405.9 gi|344212197|ref|YP_004796517.1| - 0.19 11.1 0.9 1.8 8.0 0.2 2.2 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) zf-C4H2 PF10146.4 gi|344212197|ref|YP_004796517.1| - 0.26 11.2 1.2 0.32 10.9 0.9 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein DUF4549 PF15082.1 gi|344212197|ref|YP_004796517.1| - 0.29 10.7 2.8 2.9 7.5 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4549) SlyX PF04102.7 gi|344212197|ref|YP_004796517.1| - 0.38 11.1 2.2 1.4 9.3 1.0 1.9 1 1 1 2 2 2 0 SlyX IF2_N PF04760.10 gi|344212197|ref|YP_004796517.1| - 0.46 10.1 4.2 3.3 7.4 0.1 2.7 3 0 0 3 3 2 0 Translation initiation factor IF-2, N-terminal region DivIC PF04977.10 gi|344212197|ref|YP_004796517.1| - 2.1 7.8 6.3 15 5.1 3.2 2.1 1 1 1 2 2 2 0 Septum formation initiator TAT_signal PF10518.4 gi|344212198|ref|YP_004796518.1| - 0.12 12.4 0.4 0.35 10.9 0.3 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PIN_2 PF10130.4 gi|344212199|ref|YP_004796519.1| - 4.9e-30 104.2 2.1 5.8e-30 104.0 1.5 1.0 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|344212199|ref|YP_004796519.1| - 2.8e-09 37.3 2.9 3.9e-09 36.8 2.0 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|344212199|ref|YP_004796519.1| - 1.3e-08 35.4 1.5 1.3e-08 35.4 1.0 1.4 1 1 0 1 1 1 1 PIN domain IL5 PF02025.10 gi|344212199|ref|YP_004796519.1| - 0.038 14.0 0.0 0.066 13.2 0.0 1.4 1 0 0 1 1 1 0 Interleukin 5 YueH PF14166.1 gi|344212200|ref|YP_004796520.1| - 0.0023 17.6 0.6 0.0027 17.4 0.4 1.2 1 0 0 1 1 1 1 YueH-like protein DUF4256 PF14066.1 gi|344212200|ref|YP_004796520.1| - 0.0034 16.9 0.5 0.0035 16.8 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4256) CARD PF00619.16 gi|344212200|ref|YP_004796520.1| - 0.048 13.4 0.3 0.053 13.3 0.2 1.1 1 0 0 1 1 1 0 Caspase recruitment domain ORF6C PF10552.4 gi|344212200|ref|YP_004796520.1| - 0.061 13.0 0.4 0.075 12.7 0.3 1.2 1 0 0 1 1 1 0 ORF6C domain EnY2 PF10163.4 gi|344212200|ref|YP_004796520.1| - 0.065 13.1 0.6 0.071 13.0 0.4 1.1 1 0 0 1 1 1 0 Transcription factor e(y)2 TFIIE_alpha PF02002.12 gi|344212200|ref|YP_004796520.1| - 0.07 12.6 0.1 0.089 12.3 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Vmethyltransf_C PF08456.5 gi|344212200|ref|YP_004796520.1| - 0.5 9.7 2.8 0.58 9.5 1.9 1.0 1 0 0 1 1 1 0 Viral methyltransferase C-terminal MS_channel PF00924.13 gi|344212201|ref|YP_004796521.1| - 1.1e-55 188.2 0.1 1.5e-55 187.7 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel CRS1_YhbY PF01985.16 gi|344212202|ref|YP_004796522.1| - 5.6e-18 64.7 0.1 6.5e-18 64.5 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain DUF2042 PF09743.4 gi|344212202|ref|YP_004796522.1| - 0.026 13.8 0.0 0.029 13.7 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HTH_11 PF08279.7 gi|344212202|ref|YP_004796522.1| - 0.1 12.2 0.0 0.25 11.0 0.0 1.6 2 0 0 2 2 2 0 HTH domain Rpr2 PF04032.11 gi|344212203|ref|YP_004796523.1| - 1.3e-18 66.5 0.4 1.6e-18 66.3 0.3 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1771 PF08590.5 gi|344212203|ref|YP_004796523.1| - 0.0073 16.2 1.0 0.012 15.6 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1771) zf-UBR PF02207.15 gi|344212203|ref|YP_004796523.1| - 0.041 13.5 0.8 0.058 13.1 0.6 1.3 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) PspA_IM30 PF04012.7 gi|344212203|ref|YP_004796523.1| - 0.16 11.3 1.7 0.19 11.0 1.2 1.1 1 0 0 1 1 1 0 PspA/IM30 family Glycos_transf_1 PF00534.15 gi|344212204|ref|YP_004796524.1| - 9.2e-22 77.2 0.0 2.7e-20 72.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344212204|ref|YP_004796524.1| - 2.9e-17 63.0 0.1 5.2e-16 59.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344212204|ref|YP_004796524.1| - 1.9e-16 60.1 0.2 4e-16 59.0 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344212204|ref|YP_004796524.1| - 8e-10 39.0 0.1 1.8e-09 37.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344212204|ref|YP_004796524.1| - 9.2e-09 35.2 0.0 1.7e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 PEP-utilisers_N PF05524.8 gi|344212204|ref|YP_004796524.1| - 0.087 12.6 0.5 0.43 10.3 0.3 2.1 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal MFS_1 PF07690.11 gi|344212205|ref|YP_004796525.1| - 2.4e-20 72.5 82.8 2e-10 39.9 25.1 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily MFS_2 PF13347.1 gi|344212205|ref|YP_004796525.1| - 0.00011 20.7 5.7 0.00011 20.7 3.9 3.2 3 1 0 3 3 3 1 MFS/sugar transport protein Nuc_H_symport PF03825.11 gi|344212205|ref|YP_004796525.1| - 0.00099 17.9 2.6 0.0023 16.7 1.8 1.6 1 0 0 1 1 1 1 Nucleoside H+ symporter Sugar_tr PF00083.19 gi|344212205|ref|YP_004796525.1| - 0.0024 16.5 6.9 0.0024 16.5 4.8 4.0 2 2 1 4 4 4 1 Sugar (and other) transporter MFS_3 PF05977.8 gi|344212205|ref|YP_004796525.1| - 2.9 5.9 33.4 0.05 11.7 12.7 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector Glycos_transf_1 PF00534.15 gi|344212206|ref|YP_004796526.1| - 5.8e-27 94.1 0.0 1.9e-26 92.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344212206|ref|YP_004796526.1| - 4.2e-17 62.7 1.0 5.8e-16 59.0 0.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344212206|ref|YP_004796526.1| - 5.3e-16 58.8 0.0 1.5e-15 57.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|344212206|ref|YP_004796526.1| - 3.7e-15 56.2 0.1 2.1e-13 50.5 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344212206|ref|YP_004796526.1| - 9.7e-06 25.7 0.0 2.5e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|344212206|ref|YP_004796526.1| - 0.018 14.8 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like Peptidase_M48 PF01435.13 gi|344212208|ref|YP_004796528.1| - 2e-25 89.7 0.0 5.1e-25 88.3 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|344212208|ref|YP_004796528.1| - 3.2e-06 26.3 0.0 6.1e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF45 PF01863.12 gi|344212208|ref|YP_004796528.1| - 0.00048 19.9 0.0 0.00076 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF45 Peptidase_MA_2 PF13485.1 gi|344212208|ref|YP_004796528.1| - 0.028 14.4 0.0 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Peptidase MA superfamily Glyco_trans_1_3 PF13528.1 gi|344212208|ref|YP_004796528.1| - 0.029 13.5 0.0 0.044 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 1 DUF2268 PF10026.4 gi|344212208|ref|YP_004796528.1| - 0.19 11.0 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Amidase PF01425.16 gi|344212209|ref|YP_004796529.1| - 1.2e-139 466.0 1.1 1.4e-139 465.7 0.8 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|344212210|ref|YP_004796530.1| - 9.6e-17 60.5 1.6 1.5e-16 59.8 1.1 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF2120 PF09893.4 gi|344212210|ref|YP_004796530.1| - 0.065 13.1 0.3 0.07 13.0 0.2 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) TFIIB PF00382.14 gi|344212211|ref|YP_004796531.1| - 1e-43 146.9 0.2 7.9e-21 73.6 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344212211|ref|YP_004796531.1| - 7e-18 63.6 3.4 2.3e-17 62.0 2.5 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|344212211|ref|YP_004796531.1| - 0.005 16.1 5.5 0.011 15.0 0.0 3.8 5 0 0 5 5 5 1 Sigma-70, region 4 Rubredoxin PF00301.15 gi|344212211|ref|YP_004796531.1| - 0.046 13.5 0.5 3.1 7.7 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin HTH_24 PF13412.1 gi|344212211|ref|YP_004796531.1| - 0.057 12.8 0.1 0.12 11.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding A2L_zn_ribbon PF08792.5 gi|344212211|ref|YP_004796531.1| - 0.077 12.4 1.7 0.19 11.2 1.2 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain DZR PF12773.2 gi|344212211|ref|YP_004796531.1| - 0.11 12.3 0.8 0.2 11.4 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|344212211|ref|YP_004796531.1| - 0.18 11.5 1.5 0.37 10.5 1.0 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit TrmB PF01978.14 gi|344212211|ref|YP_004796531.1| - 0.21 11.3 1.3 0.5 10.1 0.2 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Zn-ribbon_8 PF09723.5 gi|344212211|ref|YP_004796531.1| - 1.9 8.5 5.6 5.4 7.0 0.5 2.4 1 1 1 2 2 2 0 Zinc ribbon domain NUDIX PF00293.23 gi|344212212|ref|YP_004796532.1| - 1.2e-12 47.6 0.1 1.5e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain DUF2061 PF09834.4 gi|344212213|ref|YP_004796533.1| - 2.2e-17 62.9 2.6 2.5e-17 62.7 1.8 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) Asn_synthase PF00733.16 gi|344212214|ref|YP_004796534.1| - 7.1e-41 140.3 1.2 1.2e-40 139.6 0.9 1.3 1 0 0 1 1 1 1 Asparagine synthase PSK_trans_fac PF07704.6 gi|344212214|ref|YP_004796534.1| - 0.00072 20.1 4.1 0.0012 19.4 0.1 2.7 2 0 0 2 2 2 1 Rv0623-like transcription factor NAD_synthase PF02540.12 gi|344212214|ref|YP_004796534.1| - 0.17 10.7 0.1 0.36 9.6 0.0 1.6 1 1 0 1 1 1 0 NAD synthase PHP_C PF13263.1 gi|344212215|ref|YP_004796535.1| - 4.1e-24 83.8 0.5 5.5e-23 80.2 0.2 2.3 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|344212215|ref|YP_004796535.1| - 1.9e-16 60.3 0.0 1.7e-15 57.2 0.0 2.1 1 1 0 1 1 1 1 PHP domain Radical_SAM PF04055.16 gi|344212216|ref|YP_004796536.1| - 1.4e-21 77.4 0.0 5.2e-21 75.5 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|344212216|ref|YP_004796536.1| - 1e-10 41.8 0.0 2.3e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|344212216|ref|YP_004796536.1| - 1.3e-09 38.1 0.0 1.6e-08 34.5 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF77 PF01910.12 gi|344212216|ref|YP_004796536.1| - 0.16 11.6 0.0 0.81 9.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF77 PaaB PF06243.6 gi|344212217|ref|YP_004796537.1| - 2.8e-18 65.8 0.1 3e-18 65.7 0.0 1.0 1 0 0 1 1 1 1 Phenylacetic acid degradation B Cu-oxidase_2 PF07731.9 gi|344212218|ref|YP_004796538.1| - 3.6e-30 104.2 13.5 9.5e-21 73.7 1.6 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|344212218|ref|YP_004796538.1| - 2.1e-21 75.8 9.5 3.7e-17 62.1 1.1 2.5 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|344212218|ref|YP_004796538.1| - 2.5e-09 37.2 0.0 7e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase TAT_signal PF10518.4 gi|344212218|ref|YP_004796538.1| - 0.0032 17.3 0.8 0.0055 16.5 0.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|344212218|ref|YP_004796538.1| - 0.0036 17.1 0.1 0.16 11.9 0.0 2.7 2 2 0 2 2 2 1 Cupredoxin-like domain SprT-like PF10263.4 gi|344212218|ref|YP_004796538.1| - 2.4 7.7 5.5 0.23 11.1 0.2 1.8 2 0 0 2 2 2 0 SprT-like family HTH_20 PF12840.2 gi|344212219|ref|YP_004796539.1| - 2.4e-08 33.6 0.1 3.8e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344212219|ref|YP_004796539.1| - 1.3e-05 24.6 0.1 2.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|344212219|ref|YP_004796539.1| - 0.0007 19.2 0.1 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|344212219|ref|YP_004796539.1| - 0.0037 16.5 0.0 0.0064 15.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 ArsR PF09824.4 gi|344212219|ref|YP_004796539.1| - 0.0039 16.5 0.0 0.0045 16.3 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator MarR_2 PF12802.2 gi|344212219|ref|YP_004796539.1| - 0.033 13.8 0.1 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 MarR family TPP_enzyme_M PF00205.17 gi|344212219|ref|YP_004796539.1| - 0.053 13.2 0.0 0.069 12.9 0.0 1.1 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain HTH_7 PF02796.10 gi|344212219|ref|YP_004796539.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase SNARE_assoc PF09335.6 gi|344212220|ref|YP_004796540.1| - 0.078 13.1 3.8 0.17 12.1 2.6 1.8 1 1 0 1 1 1 0 SNARE associated Golgi protein Herpes_UL43 PF05072.8 gi|344212220|ref|YP_004796540.1| - 0.1 11.3 0.9 0.12 11.1 0.6 1.1 1 0 0 1 1 1 0 Herpesvirus UL43 protein UPF0233 PF06781.7 gi|344212220|ref|YP_004796540.1| - 0.19 11.3 1.0 0.23 11.1 0.4 1.3 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0233) DUF372 PF04036.7 gi|344212221|ref|YP_004796541.1| - 0.00051 19.4 0.4 0.00081 18.7 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF372) DUF3353 PF11833.3 gi|344212221|ref|YP_004796541.1| - 0.0075 15.7 1.3 0.0079 15.6 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3353) DUF2644 PF10841.3 gi|344212221|ref|YP_004796541.1| - 0.12 12.4 0.4 0.87 9.6 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2644) PT-VENN PF04829.8 gi|344212222|ref|YP_004796542.1| - 0.58 9.7 0.0 0.58 9.7 0.0 3.1 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif DUF2249 PF10006.4 gi|344212223|ref|YP_004796543.1| - 9.7e-14 50.7 0.4 1.5e-13 50.0 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|344212223|ref|YP_004796543.1| - 0.00013 21.5 0.0 0.0003 20.3 0.0 1.5 2 0 0 2 2 2 1 Sulfurtransferase TusA GlutR_dimer PF00745.15 gi|344212224|ref|YP_004796544.1| - 6.5e-11 42.0 1.5 7.5e-11 41.8 1.0 1.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Mg_chelatase_2 PF13335.1 gi|344212224|ref|YP_004796544.1| - 0.091 13.1 1.7 0.11 12.8 1.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI HU-DNA_bdg PF14848.1 gi|344212224|ref|YP_004796544.1| - 0.13 11.9 0.3 5.8 6.6 0.0 2.0 1 1 1 2 2 2 0 DNA-binding domain Cupin_2 PF07883.6 gi|344212225|ref|YP_004796545.1| - 5e-11 41.9 0.0 8.8e-11 41.1 0.0 1.5 2 0 0 2 2 2 1 Cupin domain AraC_binding_2 PF14525.1 gi|344212225|ref|YP_004796545.1| - 0.00035 20.1 0.1 0.00037 20.0 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_6 PF12852.2 gi|344212225|ref|YP_004796545.1| - 0.066 12.8 0.0 0.087 12.4 0.0 1.3 1 1 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|344212225|ref|YP_004796545.1| - 0.069 12.5 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Excalibur PF05901.6 gi|344212225|ref|YP_004796545.1| - 0.14 12.5 0.6 7.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Excalibur calcium-binding domain DUF2249 PF10006.4 gi|344212226|ref|YP_004796546.1| - 2.3e-23 81.5 0.1 2.5e-23 81.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|344212226|ref|YP_004796546.1| - 0.023 14.3 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF1180 PF06679.7 gi|344212228|ref|YP_004796548.1| - 0.46 10.3 8.4 1.8 8.4 5.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1180) NnrU PF07298.6 gi|344212229|ref|YP_004796549.1| - 0.075 12.3 0.8 0.19 11.0 0.2 1.7 1 1 1 2 2 2 0 NnrU protein DUF3978 PF13123.1 gi|344212229|ref|YP_004796549.1| - 0.14 11.5 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3978) AIRS PF00586.19 gi|344212230|ref|YP_004796550.1| - 1.5e-39 134.0 15.7 4.4e-25 87.7 0.1 3.6 4 0 0 4 4 4 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|344212230|ref|YP_004796550.1| - 5.9e-39 133.5 6.6 2.2e-27 95.9 0.6 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain HATPase_c PF02518.21 gi|344212231|ref|YP_004796551.1| - 7.6e-21 73.9 0.0 1.6e-20 72.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344212231|ref|YP_004796551.1| - 1.2e-12 47.6 7.2 1.8e-11 43.8 0.9 3.5 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|344212231|ref|YP_004796551.1| - 2.8e-06 27.6 0.1 8.1e-06 26.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|344212231|ref|YP_004796551.1| - 1.1e-05 25.0 0.1 8.8e-05 22.2 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|344212231|ref|YP_004796551.1| - 5.7e-05 23.1 1.1 0.00011 22.2 0.0 2.1 2 1 1 3 3 3 1 PAS fold HATPase_c_3 PF13589.1 gi|344212231|ref|YP_004796551.1| - 0.0014 18.3 0.0 0.0029 17.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|344212231|ref|YP_004796551.1| - 0.014 15.4 0.0 0.083 12.9 0.0 2.2 2 0 0 2 2 2 0 PAS fold PAS_7 PF12860.2 gi|344212231|ref|YP_004796551.1| - 0.061 13.3 0.2 0.17 11.8 0.1 1.8 1 0 0 1 1 1 0 PAS fold HATPase_c_5 PF14501.1 gi|344212231|ref|YP_004796551.1| - 0.088 12.5 0.0 0.59 9.8 0.0 2.3 1 1 0 1 1 1 0 GHKL domain FIST PF08495.5 gi|344212232|ref|YP_004796552.1| - 2.4e-41 141.0 5.2 2.7e-41 140.8 1.4 2.2 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.4 gi|344212232|ref|YP_004796552.1| - 2e-34 118.4 0.6 4.1e-34 117.4 0.1 1.8 2 0 0 2 2 2 1 FIST C domain His_biosynth PF00977.16 gi|344212234|ref|YP_004796554.1| - 6.1e-79 264.5 0.3 6.9e-79 264.3 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|344212234|ref|YP_004796554.1| - 3.6e-08 32.5 0.0 4.9e-05 22.3 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|344212234|ref|YP_004796554.1| - 9.6e-07 28.1 1.1 0.00038 19.6 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|344212234|ref|YP_004796554.1| - 5.3e-05 22.5 1.9 0.0096 15.1 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|344212234|ref|YP_004796554.1| - 0.001 18.3 0.2 0.0024 17.1 0.1 1.6 1 1 1 2 2 2 1 PcrB family IMPDH PF00478.20 gi|344212234|ref|YP_004796554.1| - 0.0063 15.4 0.7 0.015 14.2 0.1 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|344212234|ref|YP_004796554.1| - 0.007 15.4 0.2 0.17 10.9 0.0 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|344212234|ref|YP_004796554.1| - 0.013 14.5 0.5 0.028 13.4 0.0 1.7 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|344212234|ref|YP_004796554.1| - 0.077 12.0 0.1 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|344212234|ref|YP_004796554.1| - 0.16 10.7 0.3 0.33 9.7 0.2 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase DZR PF12773.2 gi|344212235|ref|YP_004796555.1| - 0.0031 17.2 11.0 0.0078 16.0 7.6 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344212235|ref|YP_004796555.1| - 0.0035 16.7 18.5 0.032 13.7 3.7 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|344212235|ref|YP_004796555.1| - 0.0085 15.2 11.8 0.011 14.9 1.8 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|344212235|ref|YP_004796555.1| - 0.25 11.1 5.8 1.8 8.4 1.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L37e DUF1451 PF07295.6 gi|344212235|ref|YP_004796555.1| - 0.26 11.0 7.9 0.11 12.3 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) DnaJ_CXXCXGXG PF00684.14 gi|344212235|ref|YP_004796555.1| - 1.9 8.6 8.9 3.5 7.7 6.2 1.5 1 0 0 1 1 1 0 DnaJ central domain RNA_pol_L_2 PF13656.1 gi|344212236|ref|YP_004796556.1| - 1.2e-18 66.2 0.0 1.4e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|344212236|ref|YP_004796556.1| - 4.6e-07 28.8 0.0 5.9e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zf-C2H2 PF00096.21 gi|344212237|ref|YP_004796557.1| - 0.00014 22.0 0.1 0.0002 21.4 0.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|344212237|ref|YP_004796557.1| - 0.0044 17.2 0.4 0.0064 16.7 0.3 1.3 1 0 0 1 1 1 1 C2H2-type zinc finger zinc_ribbon_2 PF13240.1 gi|344212237|ref|YP_004796557.1| - 0.03 13.8 0.1 0.051 13.0 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain PyrI_C PF02748.10 gi|344212237|ref|YP_004796557.1| - 0.042 13.2 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2HC_2 PF13913.1 gi|344212237|ref|YP_004796557.1| - 0.12 12.0 0.3 0.18 11.5 0.2 1.2 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-CHCC PF10276.4 gi|344212237|ref|YP_004796557.1| - 0.24 11.2 1.5 0.26 11.1 0.3 1.7 2 0 0 2 2 2 0 Zinc-finger domain COX3 PF00510.13 gi|344212239|ref|YP_004796559.1| - 2e-38 132.3 18.5 2.9e-38 131.7 12.8 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Zn_Tnp_IS1595 PF12760.2 gi|344212240|ref|YP_004796560.1| - 0.032 14.0 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344212240|ref|YP_004796560.1| - 0.069 13.1 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|344212240|ref|YP_004796560.1| - 1.2 8.4 4.2 7.5 5.9 2.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain ADH_N PF08240.7 gi|344212242|ref|YP_004796562.1| - 4.5e-29 100.4 1.1 4.5e-29 100.4 0.7 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|344212242|ref|YP_004796562.1| - 1.5e-18 66.5 0.2 3.1e-18 65.5 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|344212242|ref|YP_004796562.1| - 8.3e-07 29.9 0.7 1.7e-06 28.9 0.5 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|344212242|ref|YP_004796562.1| - 0.19 10.9 5.1 0.52 9.5 3.6 1.7 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DUF2387 PF09526.5 gi|344212243|ref|YP_004796563.1| - 0.045 13.6 0.2 0.077 12.9 0.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) NinG PF05766.7 gi|344212243|ref|YP_004796563.1| - 0.12 12.0 2.1 0.16 11.7 1.5 1.3 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein DNA_ligase_IV PF11411.3 gi|344212243|ref|YP_004796563.1| - 0.16 11.7 0.8 0.32 10.7 0.6 1.5 1 0 0 1 1 1 0 DNA ligase IV Toxin_25 PF08095.6 gi|344212243|ref|YP_004796563.1| - 0.94 9.2 8.2 7.5 6.4 0.9 2.7 2 0 0 2 2 2 0 Hefutoxin family GATA PF00320.22 gi|344212243|ref|YP_004796563.1| - 2.1 7.7 5.6 9 5.7 0.2 2.4 2 0 0 2 2 2 0 GATA zinc finger Usp PF00582.21 gi|344212244|ref|YP_004796564.1| - 1.7e-20 73.6 2.0 2e-20 73.4 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family ABC_tran PF00005.22 gi|344212245|ref|YP_004796565.1| - 1e-31 110.0 0.0 1.4e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212245|ref|YP_004796565.1| - 1.4e-15 58.0 0.4 9.6e-08 32.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344212245|ref|YP_004796565.1| - 6.5e-06 25.5 0.2 0.00014 21.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344212245|ref|YP_004796565.1| - 4.6e-05 22.8 0.0 9.4e-05 21.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|344212245|ref|YP_004796565.1| - 0.00021 20.5 0.1 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|344212245|ref|YP_004796565.1| - 0.00032 21.0 0.0 0.0005 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|344212245|ref|YP_004796565.1| - 0.0014 18.2 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344212245|ref|YP_004796565.1| - 0.002 18.3 0.0 0.057 13.6 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|344212245|ref|YP_004796565.1| - 0.0038 17.2 0.1 0.0062 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|344212245|ref|YP_004796565.1| - 0.0053 16.2 0.1 0.011 15.2 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_15 PF13175.1 gi|344212245|ref|YP_004796565.1| - 0.0054 15.8 0.0 0.045 12.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344212245|ref|YP_004796565.1| - 0.0055 16.8 0.2 0.033 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|344212245|ref|YP_004796565.1| - 0.0067 15.8 0.0 0.013 14.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|344212245|ref|YP_004796565.1| - 0.021 14.5 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.16 gi|344212245|ref|YP_004796565.1| - 0.023 14.1 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_17 PF13207.1 gi|344212245|ref|YP_004796565.1| - 0.025 15.4 0.0 0.05 14.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|344212245|ref|YP_004796565.1| - 0.042 12.7 0.0 0.061 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|344212245|ref|YP_004796565.1| - 0.049 13.5 0.0 0.094 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|344212245|ref|YP_004796565.1| - 0.073 13.0 0.0 0.098 12.6 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|344212245|ref|YP_004796565.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|344212245|ref|YP_004796565.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|344212245|ref|YP_004796565.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|344212245|ref|YP_004796565.1| - 0.12 10.7 0.0 0.15 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344212245|ref|YP_004796565.1| - 0.13 11.9 0.1 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.12 gi|344212245|ref|YP_004796565.1| - 0.13 11.7 0.2 0.25 10.8 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_tran PF00005.22 gi|344212246|ref|YP_004796566.1| - 7.3e-32 110.5 0.0 1.1e-31 110.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212246|ref|YP_004796566.1| - 1.1e-11 45.2 1.4 8.9e-06 25.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|344212246|ref|YP_004796566.1| - 4e-10 39.1 0.1 9.8e-10 37.8 0.1 1.7 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|344212246|ref|YP_004796566.1| - 3.4e-07 30.7 0.0 6.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344212246|ref|YP_004796566.1| - 1.4e-06 27.6 0.0 2.8e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|344212246|ref|YP_004796566.1| - 0.00014 21.1 0.2 0.015 14.5 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|344212246|ref|YP_004796566.1| - 0.00068 19.5 0.0 0.0016 18.3 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase DUF258 PF03193.11 gi|344212246|ref|YP_004796566.1| - 0.0029 16.8 0.0 0.0039 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|344212246|ref|YP_004796566.1| - 0.0042 16.1 0.5 1.4 7.8 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|344212246|ref|YP_004796566.1| - 0.047 13.6 0.0 0.051 13.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|344212246|ref|YP_004796566.1| - 0.058 12.7 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|344212246|ref|YP_004796566.1| - 0.073 12.9 0.0 0.21 11.4 0.0 1.8 2 1 0 2 2 2 0 AAA domain FeoB_N PF02421.13 gi|344212246|ref|YP_004796566.1| - 0.077 12.2 1.9 0.36 10.1 0.1 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B ArgK PF03308.11 gi|344212246|ref|YP_004796566.1| - 0.12 11.1 0.0 0.2 10.3 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_10 PF12846.2 gi|344212246|ref|YP_004796566.1| - 0.13 11.6 0.2 0.31 10.4 0.2 1.8 1 1 0 1 1 1 0 AAA-like domain AAA_13 PF13166.1 gi|344212246|ref|YP_004796566.1| - 0.19 10.1 0.0 1.5 7.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.11 gi|344212247|ref|YP_004796567.1| - 3.6e-36 124.5 36.6 4.5e-36 124.1 25.4 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|344212248|ref|YP_004796568.1| - 1.4e-39 135.7 41.6 1.7e-39 135.4 28.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1656 PF07869.7 gi|344212248|ref|YP_004796568.1| - 5.7 6.8 18.4 0.39 10.5 0.2 4.1 4 1 0 4 4 4 0 Protein of unknown function (DUF1656) Peripla_BP_6 PF13458.1 gi|344212249|ref|YP_004796569.1| - 1e-48 166.4 1.7 1.3e-48 166.1 1.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|344212249|ref|YP_004796569.1| - 1.7e-18 66.5 0.7 7.7e-18 64.3 0.5 1.8 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|344212249|ref|YP_004796569.1| - 1.7e-17 63.2 0.0 2.4e-17 62.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|344212249|ref|YP_004796569.1| - 0.14 12.2 1.0 0.49 10.5 0.7 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Na_sulph_symp PF00939.14 gi|344212250|ref|YP_004796570.1| - 5.7e-78 262.8 38.2 6.7e-78 262.6 26.4 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|344212250|ref|YP_004796570.1| - 2.4e-17 62.5 33.4 5.3e-17 61.4 16.4 2.5 1 1 1 2 2 2 2 Citrate transporter HTH_19 PF12844.2 gi|344212251|ref|YP_004796571.1| - 0.0069 16.4 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|344212251|ref|YP_004796571.1| - 0.031 14.1 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix Cytomega_gL PF01801.11 gi|344212251|ref|YP_004796571.1| - 0.037 13.5 0.1 0.041 13.3 0.1 1.1 1 0 0 1 1 1 0 Cytomegalovirus glycoprotein L HTH_31 PF13560.1 gi|344212251|ref|YP_004796571.1| - 0.079 13.1 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Met_10 PF02475.11 gi|344212252|ref|YP_004796572.1| - 3.6e-60 203.0 0.0 4.7e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|344212252|ref|YP_004796572.1| - 3.2e-09 37.3 1.1 1.7e-08 35.0 0.1 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212252|ref|YP_004796572.1| - 2.7e-08 33.8 5.5 4.7e-08 33.0 0.2 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|344212252|ref|YP_004796572.1| - 3.2e-08 33.3 0.0 4.7e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|344212252|ref|YP_004796572.1| - 1.2e-07 31.4 0.0 1.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344212252|ref|YP_004796572.1| - 2.1e-07 30.4 0.0 9.2e-07 28.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|344212252|ref|YP_004796572.1| - 2.5e-06 27.2 0.0 4.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|344212252|ref|YP_004796572.1| - 1.8e-05 23.9 0.0 2.9e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|344212252|ref|YP_004796572.1| - 0.00047 20.9 0.5 0.012 16.3 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212252|ref|YP_004796572.1| - 0.0023 18.2 0.0 0.0054 17.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344212252|ref|YP_004796572.1| - 0.0027 18.1 0.0 0.0058 17.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|344212252|ref|YP_004796572.1| - 0.004 16.5 0.1 0.01 15.2 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 DNA_methylase PF00145.12 gi|344212252|ref|YP_004796572.1| - 0.0067 15.5 0.0 0.01 15.0 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_23 PF13489.1 gi|344212252|ref|YP_004796572.1| - 0.036 13.7 0.0 0.074 12.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|344212252|ref|YP_004796572.1| - 0.05 12.5 0.0 0.084 11.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) TRM PF02005.11 gi|344212252|ref|YP_004796572.1| - 0.062 12.2 0.0 0.12 11.2 0.0 1.5 2 0 0 2 2 2 0 N2,N2-dimethylguanosine tRNA methyltransferase MethyltransfD12 PF02086.10 gi|344212252|ref|YP_004796572.1| - 0.2 11.0 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase TP_methylase PF00590.15 gi|344212253|ref|YP_004796573.1| - 7.7e-19 68.2 0.5 9.7e-19 67.9 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exosortase_EpsH PF09721.5 gi|344212254|ref|YP_004796574.1| - 4.2e-54 183.5 22.5 5e-54 183.2 15.6 1.0 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) MrpF_PhaF PF04066.8 gi|344212254|ref|YP_004796574.1| - 1.3 9.3 0.0 1.3 9.3 0.0 3.7 4 1 0 4 4 4 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Gram_pos_anchor PF00746.16 gi|344212256|ref|YP_004796576.1| - 0.013 15.2 0.6 0.013 15.2 0.4 2.7 3 0 0 3 3 3 0 Gram positive anchor FtsK_SpoIIIE_N PF12538.3 gi|344212256|ref|YP_004796576.1| - 0.032 14.3 0.7 0.13 12.3 0.1 2.4 2 0 0 2 2 2 0 DNA transporter Trypan_PARP PF05887.6 gi|344212256|ref|YP_004796576.1| - 1.5 8.6 31.9 0.14 11.9 11.4 3.9 3 1 0 3 3 3 0 Procyclic acidic repetitive protein (PARP) Glyoxalase_2 PF12681.2 gi|344212257|ref|YP_004796577.1| - 6.2e-21 75.0 6.1 3.8e-13 49.9 0.4 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344212257|ref|YP_004796577.1| - 8.8e-21 74.2 3.6 2.1e-12 47.1 0.3 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|344212257|ref|YP_004796577.1| - 1.3e-11 44.4 2.1 6.7e-05 22.8 0.0 2.9 2 1 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|344212257|ref|YP_004796577.1| - 1.3e-06 28.4 0.3 0.15 11.9 0.0 4.0 3 1 0 3 3 3 2 Glyoxalase-like domain MMR_HSR1 PF01926.18 gi|344212259|ref|YP_004796579.1| - 4.2e-20 71.8 0.0 7.7e-20 70.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|344212259|ref|YP_004796579.1| - 6.6e-16 57.9 0.0 1.2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|344212259|ref|YP_004796579.1| - 1.2e-12 47.4 0.1 7.7e-12 44.7 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|344212259|ref|YP_004796579.1| - 2.6e-05 24.1 0.0 0.11 12.3 0.0 2.5 2 0 0 2 2 2 2 Dynamin family ArgK PF03308.11 gi|344212259|ref|YP_004796579.1| - 0.0029 16.4 0.1 0.04 12.7 0.0 2.4 2 1 0 2 2 2 1 ArgK protein Miro PF08477.8 gi|344212259|ref|YP_004796579.1| - 0.0059 17.0 0.0 0.016 15.7 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|344212259|ref|YP_004796579.1| - 0.0082 15.5 0.1 0.86 8.9 0.0 2.9 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|344212259|ref|YP_004796579.1| - 0.0083 15.2 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 AIG1 family AAA_28 PF13521.1 gi|344212259|ref|YP_004796579.1| - 0.0095 15.9 0.0 0.033 14.1 0.0 2.0 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344212259|ref|YP_004796579.1| - 0.0097 15.1 0.0 0.029 13.5 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344212259|ref|YP_004796579.1| - 0.018 15.0 0.0 0.043 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain Arf PF00025.16 gi|344212259|ref|YP_004796579.1| - 0.022 14.0 0.1 0.68 9.1 0.0 2.4 2 1 0 2 2 2 0 ADP-ribosylation factor family AAA_18 PF13238.1 gi|344212259|ref|YP_004796579.1| - 0.023 14.9 0.8 0.14 12.4 0.6 2.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|344212259|ref|YP_004796579.1| - 0.024 14.9 0.0 0.065 13.5 0.0 1.7 2 0 0 2 2 2 0 ABC transporter cobW PF02492.14 gi|344212259|ref|YP_004796579.1| - 0.029 13.8 0.4 1.3 8.4 0.0 2.6 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|344212259|ref|YP_004796579.1| - 0.059 12.5 0.0 0.14 11.3 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_29 PF13555.1 gi|344212259|ref|YP_004796579.1| - 0.09 12.3 0.1 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|344212259|ref|YP_004796579.1| - 0.12 13.1 2.8 1.5 9.6 1.8 2.7 1 1 0 1 1 1 0 AAA domain DUF2813 PF11398.3 gi|344212259|ref|YP_004796579.1| - 0.13 11.2 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) TpcC PF12642.2 gi|344212260|ref|YP_004796580.1| - 0.11 12.0 0.0 0.11 12.0 0.0 1.0 1 0 0 1 1 1 0 Conjugative transposon protein TcpC Ribosomal_L11 PF00298.14 gi|344212261|ref|YP_004796581.1| - 2.7e-21 75.5 0.0 3.9e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|344212261|ref|YP_004796581.1| - 7.9e-20 70.0 0.1 1.2e-19 69.4 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.16 gi|344212262|ref|YP_004796582.1| - 1.1e-42 145.9 0.0 1.3e-42 145.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|344212263|ref|YP_004796583.1| - 5.5e-21 74.3 0.0 1.2e-20 73.2 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|344212264|ref|YP_004796584.1| - 2.6e-15 56.5 18.0 3.4e-15 56.1 12.5 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein NOA36 PF06524.7 gi|344212264|ref|YP_004796584.1| - 1 8.5 7.1 1.1 8.4 4.9 1.1 1 0 0 1 1 1 0 NOA36 protein CENP-T PF15511.1 gi|344212264|ref|YP_004796584.1| - 1.2 8.2 9.6 1.3 8.1 6.6 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Cwf_Cwc_15 PF04889.7 gi|344212264|ref|YP_004796584.1| - 3.4 7.3 8.0 3.5 7.2 5.5 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2457 PF10446.4 gi|344212264|ref|YP_004796584.1| - 6.8 5.3 13.9 6.5 5.3 9.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) CDC45 PF02724.9 gi|344212264|ref|YP_004796584.1| - 8.6 4.2 7.0 8.6 4.2 4.8 1.1 1 0 0 1 1 1 0 CDC45-like protein CARDB PF07705.6 gi|344212265|ref|YP_004796585.1| - 1.5e-15 57.0 43.3 0.0022 17.9 0.8 8.3 7 1 0 8 8 8 6 CARDB BsuPI PF12690.2 gi|344212265|ref|YP_004796585.1| - 0.00013 21.6 1.6 3.3 7.4 0.0 5.1 6 0 0 6 6 6 2 Intracellular proteinase inhibitor Fn3-like PF14310.1 gi|344212265|ref|YP_004796585.1| - 0.00049 19.9 1.1 0.39 10.6 0.0 5.3 6 0 0 6 6 6 1 Fibronectin type III-like domain Glyco_hydro_2 PF00703.16 gi|344212265|ref|YP_004796585.1| - 0.042 14.2 21.6 0.93 9.9 0.1 6.9 6 1 1 7 7 7 0 Glycosyl hydrolases family 2 DUF2393 PF09624.5 gi|344212265|ref|YP_004796585.1| - 0.28 10.7 2.9 23 4.4 0.1 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2393) PsbI PF02532.9 gi|344212266|ref|YP_004796586.1| - 0.2 11.3 4.6 0.47 10.1 3.2 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) TadE PF07811.7 gi|344212266|ref|YP_004796586.1| - 0.52 10.2 2.9 1.1 9.2 2.0 1.5 1 0 0 1 1 1 0 TadE-like protein DUF2190 PF09956.4 gi|344212267|ref|YP_004796587.1| - 0.069 12.9 0.3 0.23 11.2 0.2 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) Bactofilin PF04519.8 gi|344212271|ref|YP_004796591.1| - 0.00032 20.6 5.1 0.00032 20.6 3.5 3.1 2 1 0 2 2 2 1 Polymer-forming cytoskeletal DUF3060 PF11259.3 gi|344212272|ref|YP_004796592.1| - 0.23 11.1 9.2 0.29 10.7 0.8 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3060) Ribosomal_S15 PF00312.17 gi|344212273|ref|YP_004796593.1| - 4.6e-30 103.2 0.1 6.6e-30 102.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|344212273|ref|YP_004796593.1| - 4.6e-23 80.8 0.0 8.1e-23 80.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain STAT2_C PF12188.3 gi|344212273|ref|YP_004796593.1| - 0.058 13.1 0.2 0.13 12.0 0.2 1.6 1 0 0 1 1 1 0 Signal transducer and activator of transcription 2 C terminal FlpD PF02662.11 gi|344212274|ref|YP_004796594.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit PhageP22-tail PF09251.5 gi|344212275|ref|YP_004796595.1| - 0.093 10.9 0.0 0.093 10.9 0.0 1.0 1 0 0 1 1 1 0 Salmonella phage P22 tail-spike Ribosomal_S3Ae PF01015.13 gi|344212276|ref|YP_004796596.1| - 2.8e-70 235.6 2.6 3.4e-70 235.3 1.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Spore_III_AF PF09581.5 gi|344212276|ref|YP_004796596.1| - 0.038 13.8 2.0 0.068 13.0 1.4 1.5 1 1 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) Copper-bind PF00127.15 gi|344212277|ref|YP_004796597.1| - 1.1e-12 48.0 0.0 2e-12 47.1 0.0 1.4 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|344212277|ref|YP_004796597.1| - 0.012 15.5 3.3 0.012 15.5 2.3 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|344212277|ref|YP_004796597.1| - 0.074 12.9 0.0 0.47 10.3 0.0 1.9 2 0 0 2 2 2 0 Cupredoxin-like domain ATP-grasp PF02222.17 gi|344212278|ref|YP_004796598.1| - 7.2e-57 191.4 0.0 1e-56 191.0 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|344212278|ref|YP_004796598.1| - 5.6e-21 75.0 0.4 1.6e-20 73.6 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|344212278|ref|YP_004796598.1| - 1.3e-08 33.9 0.0 3.2e-07 29.4 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|344212278|ref|YP_004796598.1| - 7.2e-08 32.0 0.0 3.3e-07 29.8 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|344212278|ref|YP_004796598.1| - 6.6e-05 22.8 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|344212278|ref|YP_004796598.1| - 0.00014 21.0 0.0 0.00024 20.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.12 gi|344212278|ref|YP_004796598.1| - 0.0011 18.3 0.0 0.0018 17.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|344212278|ref|YP_004796598.1| - 0.0088 15.2 0.0 0.018 14.2 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|344212278|ref|YP_004796598.1| - 0.017 14.5 0.0 0.096 12.1 0.0 2.0 1 1 0 1 1 1 0 RimK-like ATP-grasp domain PMT_2 PF13231.1 gi|344212279|ref|YP_004796599.1| - 3.5e-12 46.5 9.0 3.5e-12 46.5 6.2 2.5 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|344212279|ref|YP_004796599.1| - 7.9e-06 25.4 8.1 7.9e-06 25.4 5.6 1.7 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DMRL_synthase PF00885.14 gi|344212280|ref|YP_004796600.1| - 3.2e-31 107.9 0.5 3.5e-31 107.8 0.4 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DUF3356 PF11836.3 gi|344212280|ref|YP_004796600.1| - 0.83 9.4 3.5 1.4 8.7 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3356) Aminotran_1_2 PF00155.16 gi|344212281|ref|YP_004796601.1| - 3.6e-67 226.8 0.0 4.1e-67 226.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|344212281|ref|YP_004796601.1| - 3.9e-08 32.7 0.1 1.1e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|344212281|ref|YP_004796601.1| - 0.001 17.4 0.0 0.0018 16.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|344212281|ref|YP_004796601.1| - 0.02 13.9 0.1 0.035 13.1 0.1 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF3483 PF11982.3 gi|344212282|ref|YP_004796602.1| - 0.00048 19.5 0.9 0.00074 18.8 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3483) CTP_transf_2 PF01467.21 gi|344212283|ref|YP_004796603.1| - 2.2e-14 53.7 0.1 7.5e-14 52.0 0.1 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|344212283|ref|YP_004796603.1| - 0.099 12.2 1.4 0.13 11.9 0.3 1.7 2 1 1 3 3 3 0 FAD synthetase Prok-JAB PF14464.1 gi|344212284|ref|YP_004796604.1| - 8.3e-14 51.0 0.0 1.1e-13 50.6 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|344212284|ref|YP_004796604.1| - 0.056 13.1 0.0 0.16 11.7 0.0 1.8 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|344212284|ref|YP_004796604.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|344212284|ref|YP_004796604.1| - 0.16 11.8 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 tRNA_anti-codon PF01336.20 gi|344212285|ref|YP_004796605.1| - 2.8e-13 49.5 0.2 6.2e-13 48.4 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|344212285|ref|YP_004796605.1| - 1.6e-09 37.5 0.4 3.5e-09 36.4 0.0 1.7 2 0 0 2 2 2 1 DHH family S1 PF00575.18 gi|344212285|ref|YP_004796605.1| - 0.001 19.0 1.4 0.0014 18.7 0.0 1.9 2 0 0 2 2 2 1 S1 RNA binding domain Rep_fac-A_3 PF08661.6 gi|344212285|ref|YP_004796605.1| - 0.12 12.2 0.1 0.25 11.2 0.1 1.5 1 0 0 1 1 1 0 Replication factor A protein 3 PLDc_2 PF13091.1 gi|344212286|ref|YP_004796606.1| - 4.5e-36 123.3 0.0 3.2e-20 72.1 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|344212286|ref|YP_004796606.1| - 0.00017 21.2 0.3 0.012 15.3 0.0 2.4 2 0 0 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|344212286|ref|YP_004796606.1| - 0.023 13.7 0.0 3.1 6.7 0.0 2.4 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB HEAT_2 PF13646.1 gi|344212287|ref|YP_004796607.1| - 2.6e-19 69.2 8.5 9.2e-12 45.0 2.6 3.1 2 1 1 3 3 2 2 HEAT repeats HEAT_PBS PF03130.11 gi|344212287|ref|YP_004796607.1| - 9.6e-11 41.1 10.8 0.021 15.2 0.9 5.8 5 0 0 5 5 5 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|344212287|ref|YP_004796607.1| - 1.6e-06 28.3 3.9 0.00014 22.2 0.1 3.2 2 0 0 2 2 2 1 HEAT-like repeat HEAT PF02985.17 gi|344212287|ref|YP_004796607.1| - 3.7e-05 23.4 0.3 0.071 13.2 0.1 3.4 3 0 0 3 3 3 1 HEAT repeat Arm PF00514.18 gi|344212287|ref|YP_004796607.1| - 0.00013 21.6 0.0 0.19 11.5 0.0 3.3 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat DUF883 PF05957.8 gi|344212287|ref|YP_004796607.1| - 0.0095 16.3 0.6 0.0095 16.3 0.4 3.3 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF883) EntA_Immun PF08951.5 gi|344212287|ref|YP_004796607.1| - 0.061 13.4 0.1 13 6.0 0.0 3.5 3 0 0 3 3 3 0 Enterocin A Immunity IncA PF04156.9 gi|344212287|ref|YP_004796607.1| - 0.29 10.7 5.0 0.5 9.9 3.5 1.3 1 0 0 1 1 1 0 IncA protein CCDC-167 PF15188.1 gi|344212287|ref|YP_004796607.1| - 0.65 9.9 2.6 5.1 7.1 1.1 2.6 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 XhlA PF10779.4 gi|344212287|ref|YP_004796607.1| - 1.9 8.4 4.2 3.9 7.4 0.3 2.8 1 1 2 3 3 3 0 Haemolysin XhlA PilJ PF13675.1 gi|344212287|ref|YP_004796607.1| - 7.9 6.8 13.8 20 5.5 5.3 4.0 2 2 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term Xan_ur_permease PF00860.15 gi|344212288|ref|YP_004796608.1| - 1.7e-81 273.6 34.0 1.7e-81 273.6 23.5 1.7 1 1 0 2 2 2 1 Permease family AIRC PF00731.15 gi|344212290|ref|YP_004796610.1| - 1.8e-50 170.0 0.0 2.4e-50 169.7 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.14 gi|344212291|ref|YP_004796611.1| - 2.2e-27 94.8 0.2 2.7e-27 94.5 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Oxidored_q6 PF01058.17 gi|344212292|ref|YP_004796612.1| - 6.5e-22 77.5 0.2 9.1e-22 77.0 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|344212293|ref|YP_004796613.1| - 8.1e-65 218.5 0.0 6.3e-62 209.0 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|344212293|ref|YP_004796613.1| - 7.2e-29 100.0 0.0 1.3e-28 99.2 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.16 gi|344212294|ref|YP_004796614.1| - 5.1e-83 278.6 9.8 6.3e-83 278.4 6.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|344212295|ref|YP_004796615.1| - 4.4e-13 48.2 8.8 7.4e-07 28.5 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|344212295|ref|YP_004796615.1| - 2.2e-11 43.9 10.8 3.4e-11 43.3 7.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344212295|ref|YP_004796615.1| - 1.1e-09 38.0 8.5 1.6e-09 37.4 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344212295|ref|YP_004796615.1| - 1.4e-09 38.5 5.3 1.2e-05 25.9 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|344212295|ref|YP_004796615.1| - 9.7e-09 34.7 11.8 0.00023 20.8 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|344212295|ref|YP_004796615.1| - 1.1e-08 35.2 12.0 2.7e-08 33.9 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344212295|ref|YP_004796615.1| - 1.3e-08 34.4 12.2 3e-08 33.3 8.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|344212295|ref|YP_004796615.1| - 2.5e-08 33.8 21.0 5.8e-07 29.4 8.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344212295|ref|YP_004796615.1| - 4e-08 32.7 9.2 0.00015 21.4 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|344212295|ref|YP_004796615.1| - 2.8e-07 30.3 8.5 0.0014 18.8 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|344212295|ref|YP_004796615.1| - 9.3e-06 25.9 12.6 0.0025 18.1 9.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|344212295|ref|YP_004796615.1| - 0.00015 22.1 12.7 0.035 14.5 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|344212295|ref|YP_004796615.1| - 0.00016 21.9 14.3 0.0036 17.7 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|344212295|ref|YP_004796615.1| - 0.0064 17.0 9.4 0.39 11.3 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|344212295|ref|YP_004796615.1| - 0.15 12.4 15.3 0.82 10.1 1.6 3.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|344212295|ref|YP_004796615.1| - 0.31 10.9 6.1 3.2 7.6 4.2 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.15 gi|344212296|ref|YP_004796616.1| - 2.6e-12 46.7 6.0 2.6e-12 46.7 4.1 1.2 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|344212296|ref|YP_004796616.1| - 0.0029 17.5 12.7 0.0029 17.5 8.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) PRA1 PF03208.14 gi|344212296|ref|YP_004796616.1| - 0.42 9.9 7.7 0.46 9.7 5.3 1.1 1 0 0 1 1 1 0 PRA1 family protein YjgP_YjgQ PF03739.9 gi|344212296|ref|YP_004796616.1| - 0.83 8.3 8.4 0.98 8.0 5.8 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Oxidored_q2 PF00420.19 gi|344212298|ref|YP_004796618.1| - 6.3e-22 76.9 9.0 6.9e-22 76.8 6.2 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NKAIN PF05640.9 gi|344212298|ref|YP_004796618.1| - 0.096 11.6 1.7 0.11 11.4 1.2 1.1 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein NicO PF03824.11 gi|344212298|ref|YP_004796618.1| - 0.14 11.4 5.1 0.16 11.2 3.5 1.2 1 0 0 1 1 1 0 High-affinity nickel-transport protein DUF4059 PF13268.1 gi|344212298|ref|YP_004796618.1| - 0.39 10.9 0.1 0.39 10.9 0.1 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4059) DoxX_3 PF13781.1 gi|344212298|ref|YP_004796618.1| - 3.7 7.9 7.2 1.3 9.4 0.5 2.1 1 1 1 2 2 2 0 DoxX-like family Oxidored_q1 PF00361.15 gi|344212299|ref|YP_004796619.1| - 1.2e-73 247.6 10.8 1.2e-73 247.6 7.5 2.4 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|344212299|ref|YP_004796619.1| - 7.7e-13 47.8 0.3 4e-12 45.5 0.0 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|344212299|ref|YP_004796619.1| - 0.00018 21.1 0.0 0.00035 20.1 0.0 1.5 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Peptidase_M50 PF02163.17 gi|344212299|ref|YP_004796619.1| - 0.011 14.7 0.0 0.058 12.3 0.0 2.5 2 1 0 2 2 2 0 Peptidase family M50 SBP_bac_7 PF03480.8 gi|344212299|ref|YP_004796619.1| - 0.1 11.6 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 Oxidored_q1 PF00361.15 gi|344212300|ref|YP_004796620.1| - 5.5e-70 235.7 23.2 5.5e-70 235.7 16.1 2.2 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|344212300|ref|YP_004796620.1| - 9.9e-05 22.1 0.2 9.9e-05 22.1 0.2 3.5 4 0 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|344212301|ref|YP_004796621.1| - 7e-57 192.7 13.3 7e-57 192.7 9.2 2.1 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|344212301|ref|YP_004796621.1| - 4.8e-05 22.8 1.1 4.8e-05 22.8 0.8 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Lactamase_B PF00753.22 gi|344212302|ref|YP_004796622.1| - 1.3e-15 57.5 0.1 2.1e-15 56.9 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344212302|ref|YP_004796622.1| - 1.9e-05 24.3 0.0 2.6e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain ApoLp-III PF07464.6 gi|344212303|ref|YP_004796623.1| - 0.023 14.7 1.0 0.039 13.9 0.7 1.6 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.13 gi|344212303|ref|YP_004796623.1| - 0.044 13.3 1.1 0.046 13.2 0.7 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF883 PF05957.8 gi|344212303|ref|YP_004796623.1| - 0.21 11.9 2.5 1.2 9.6 0.4 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4398 PF14346.1 gi|344212303|ref|YP_004796623.1| - 2.2 8.3 6.8 13 5.9 4.7 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) V-ATPase_G PF03179.10 gi|344212303|ref|YP_004796623.1| - 9.4 6.5 7.8 35 4.7 1.8 2.2 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Pirin PF02678.11 gi|344212304|ref|YP_004796624.1| - 1.6e-23 82.5 0.0 3e-23 81.7 0.0 1.4 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|344212304|ref|YP_004796624.1| - 3.2e-10 40.0 0.0 3.6e-09 36.6 0.0 2.2 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Pyr_redox_2 PF07992.9 gi|344212305|ref|YP_004796625.1| - 3.7e-16 59.6 1.1 4.5e-11 42.9 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|344212305|ref|YP_004796625.1| - 2.6e-12 46.3 0.4 5.9e-07 28.7 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|344212305|ref|YP_004796625.1| - 7.5e-10 37.8 0.1 8.4e-05 21.2 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|344212305|ref|YP_004796625.1| - 1.7e-09 38.0 0.7 2.7e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344212305|ref|YP_004796625.1| - 3.2e-08 33.5 0.1 9.4e-05 22.2 0.1 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|344212305|ref|YP_004796625.1| - 2e-06 26.9 0.2 0.00035 19.5 0.0 2.2 1 1 1 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|344212305|ref|YP_004796625.1| - 6.3e-06 25.2 1.4 0.00032 19.6 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|344212305|ref|YP_004796625.1| - 7.9e-06 25.1 0.2 2.5e-05 23.5 0.0 1.8 2 1 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.14 gi|344212305|ref|YP_004796625.1| - 2.6e-05 23.4 5.5 0.026 13.5 0.8 2.1 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|344212305|ref|YP_004796625.1| - 0.00039 19.6 0.1 0.00039 19.6 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|344212305|ref|YP_004796625.1| - 0.00058 19.8 0.0 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|344212305|ref|YP_004796625.1| - 0.00071 18.6 0.1 0.028 13.3 0.0 2.1 1 1 1 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|344212305|ref|YP_004796625.1| - 0.0031 17.8 0.1 0.34 11.3 0.0 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|344212305|ref|YP_004796625.1| - 0.0062 15.2 1.9 1 7.9 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase 3HCDH_N PF02737.13 gi|344212305|ref|YP_004796625.1| - 0.012 15.2 0.1 0.021 14.4 0.0 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|344212305|ref|YP_004796625.1| - 0.033 13.1 0.0 3 6.6 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.19 gi|344212305|ref|YP_004796625.1| - 0.05 12.6 0.0 0.077 12.0 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Cytomega_UL20A PF05984.7 gi|344212305|ref|YP_004796625.1| - 0.15 12.3 0.7 0.33 11.1 0.4 1.7 1 1 0 1 1 1 0 Cytomegalovirus UL20A protein DoxX PF07681.7 gi|344212306|ref|YP_004796626.1| - 1.1e-10 41.7 10.7 1.1e-10 41.7 7.4 1.6 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|344212306|ref|YP_004796626.1| - 6.3e-05 22.8 0.5 0.007 16.1 0.0 2.1 1 1 1 2 2 2 2 HR-like lesion-inducing SURF4 PF02077.10 gi|344212306|ref|YP_004796626.1| - 0.0002 20.8 0.4 0.00061 19.2 0.3 1.8 1 1 0 1 1 1 1 SURF4 family DoxX_2 PF13564.1 gi|344212306|ref|YP_004796626.1| - 0.028 14.3 13.1 0.028 14.3 8.2 1.7 1 1 1 2 2 2 0 DoxX-like family Neurensin PF14927.1 gi|344212306|ref|YP_004796626.1| - 6.7 6.0 5.7 16 4.8 2.4 2.5 2 1 0 2 2 2 0 Neurensin TetR_N PF00440.18 gi|344212307|ref|YP_004796627.1| - 2.3e-10 39.9 0.0 4.4e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|344212307|ref|YP_004796627.1| - 9.9e-10 38.4 0.5 2e-09 37.4 0.3 1.5 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_C_9 PF14514.1 gi|344212307|ref|YP_004796627.1| - 0.0046 16.7 0.1 0.011 15.5 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator, TetR, C-terminal DUF4010 PF13194.1 gi|344212308|ref|YP_004796628.1| - 0.074 12.3 0.1 0.094 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) AAA_assoc_C PF09821.4 gi|344212310|ref|YP_004796630.1| - 0.034 14.3 0.1 0.065 13.4 0.0 1.4 1 0 0 1 1 1 0 C-terminal AAA-associated domain Mrr_cat PF04471.7 gi|344212310|ref|YP_004796630.1| - 0.096 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Restriction endonuclease SQS_PSY PF00494.14 gi|344212312|ref|YP_004796632.1| - 1.9e-47 161.7 0.2 2.3e-47 161.5 0.2 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase DXP_synthase_N PF13292.1 gi|344212312|ref|YP_004796632.1| - 0.058 12.3 0.0 0.098 11.5 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase DUF3923 PF13061.1 gi|344212313|ref|YP_004796633.1| - 0.21 11.4 1.9 5.3 6.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3923) Glyco_hydro_68 PF02435.11 gi|344212314|ref|YP_004796634.1| - 5.7e-76 255.9 0.0 1.8e-74 251.0 0.0 2.2 1 1 0 1 1 1 1 Levansucrase/Invertase Glyco_hydro_43 PF04616.9 gi|344212314|ref|YP_004796634.1| - 1.8e-08 33.8 0.0 5.7e-08 32.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 BNR_2 PF13088.1 gi|344212314|ref|YP_004796634.1| - 0.00082 18.7 0.0 0.18 11.0 0.0 2.6 1 1 2 3 3 3 2 BNR repeat-like domain Glyco_hydro_32N PF00251.15 gi|344212315|ref|YP_004796635.1| - 7.7e-80 268.5 0.0 9.8e-80 268.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.7 gi|344212315|ref|YP_004796635.1| - 3e-14 53.1 0.0 5.2e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal T2SK PF03934.8 gi|344212315|ref|YP_004796635.1| - 0.066 12.3 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K E3_binding PF02817.12 gi|344212316|ref|YP_004796636.1| - 0.14 11.8 0.2 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 e3 binding domain TPR_11 PF13414.1 gi|344212317|ref|YP_004796637.1| - 0.0056 16.3 4.9 4 7.1 0.0 4.0 4 0 0 4 4 4 1 TPR repeat TPR_2 PF07719.12 gi|344212317|ref|YP_004796637.1| - 0.044 13.7 13.6 1.9 8.5 0.3 4.4 4 0 0 4 4 4 0 Tetratricopeptide repeat USP8_dimer PF08969.6 gi|344212317|ref|YP_004796637.1| - 0.13 12.2 0.1 2.4 8.1 0.0 2.3 2 0 0 2 2 2 0 USP8 dimerisation domain bPH_3 PF14470.1 gi|344212317|ref|YP_004796637.1| - 0.17 12.1 0.0 0.3 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain EzrA PF06160.7 gi|344212317|ref|YP_004796637.1| - 0.24 9.5 0.1 12 3.9 0.0 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Phasin_2 PF09361.5 gi|344212317|ref|YP_004796637.1| - 0.58 10.2 2.5 0.51 10.3 0.2 2.0 2 0 0 2 2 2 0 Phasin protein TPR_1 PF00515.23 gi|344212317|ref|YP_004796637.1| - 3.1 7.5 11.2 13 5.5 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|344212317|ref|YP_004796637.1| - 4.1 8.2 20.8 10 7.0 0.6 5.3 4 2 1 5 5 5 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|344212317|ref|YP_004796637.1| - 8.9 7.0 8.7 70 4.2 0.1 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat MreB_Mbl PF06723.8 gi|344212319|ref|YP_004796639.1| - 2.2e-06 26.4 0.1 4.8e-06 25.4 0.0 1.6 1 1 0 1 1 1 1 MreB/Mbl protein DNA_gyraseB PF00204.20 gi|344212319|ref|YP_004796639.1| - 0.055 12.6 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA gyrase B Arch_fla_DE PF04659.8 gi|344212320|ref|YP_004796640.1| - 2.9e-31 107.2 0.3 3.7e-31 106.8 0.2 1.2 1 0 0 1 1 1 1 Archaeal flagella protein CbiA PF01656.18 gi|344212321|ref|YP_004796641.1| - 4.8e-29 101.1 0.1 6.7e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|344212321|ref|YP_004796641.1| - 3.1e-11 42.8 0.4 9.4e-07 28.1 0.0 2.4 2 1 0 2 2 2 2 ATPase MipZ AAA_31 PF13614.1 gi|344212321|ref|YP_004796641.1| - 4.2e-09 36.5 0.0 4.1e-05 23.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|344212321|ref|YP_004796641.1| - 6e-07 28.9 0.0 0.0033 16.6 0.0 2.5 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|344212321|ref|YP_004796641.1| - 3.8e-06 26.1 0.4 0.0004 19.5 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase YhjQ PF06564.7 gi|344212321|ref|YP_004796641.1| - 0.0002 20.8 0.1 0.073 12.4 0.0 2.3 2 0 0 2 2 2 2 YhjQ protein AAA_19 PF13245.1 gi|344212321|ref|YP_004796641.1| - 0.00056 19.6 0.3 0.0022 17.7 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain ATP_bind_1 PF03029.12 gi|344212321|ref|YP_004796641.1| - 0.0021 17.6 0.3 0.76 9.2 0.0 2.5 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein AAA_25 PF13481.1 gi|344212321|ref|YP_004796641.1| - 0.027 13.8 0.6 0.12 11.7 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|344212321|ref|YP_004796641.1| - 0.044 13.3 0.0 0.083 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ParA PF10609.4 gi|344212321|ref|YP_004796641.1| - 0.048 13.5 0.1 0.15 11.9 0.0 1.9 2 0 0 2 2 2 0 ParA/MinD ATPase like LpxK PF02606.9 gi|344212321|ref|YP_004796641.1| - 0.055 12.4 0.0 0.089 11.7 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Popeye PF04831.8 gi|344212321|ref|YP_004796641.1| - 0.084 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Popeye protein conserved region VirC1 PF07015.6 gi|344212321|ref|YP_004796641.1| - 0.094 11.7 3.7 2 7.4 2.7 2.5 1 1 0 1 1 1 0 VirC1 protein DUF4535 PF15054.1 gi|344212321|ref|YP_004796641.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) MobB PF03205.9 gi|344212321|ref|YP_004796641.1| - 0.16 11.7 0.1 1.4 8.6 0.0 2.3 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B CheW PF01584.14 gi|344212322|ref|YP_004796642.1| - 5.9e-22 77.6 0.6 8.9e-22 77.0 0.4 1.3 1 0 0 1 1 1 1 CheW-like domain Pyr_redox PF00070.22 gi|344212323|ref|YP_004796643.1| - 1.2e-12 48.0 6.3 5e-09 36.4 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|344212323|ref|YP_004796643.1| - 5.7e-09 36.1 0.1 1.8e-08 34.5 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|344212323|ref|YP_004796643.1| - 1.2e-06 27.6 1.5 0.74 8.6 0.0 3.4 3 0 0 3 3 3 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|344212323|ref|YP_004796643.1| - 1.4e-05 25.2 0.2 0.043 13.8 0.0 2.6 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344212323|ref|YP_004796643.1| - 0.00018 21.2 2.4 0.84 9.4 0.0 3.6 2 2 2 4 4 4 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|344212323|ref|YP_004796643.1| - 0.00097 18.1 0.6 0.17 10.7 0.0 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|344212323|ref|YP_004796643.1| - 0.0011 18.9 5.1 0.31 11.1 0.0 3.1 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|344212323|ref|YP_004796643.1| - 0.0023 17.3 0.3 0.029 13.7 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF4147 PF13660.1 gi|344212323|ref|YP_004796643.1| - 0.0028 16.8 0.1 0.14 11.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) TrkA_N PF02254.13 gi|344212323|ref|YP_004796643.1| - 0.0046 16.9 0.2 0.3 11.0 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|344212323|ref|YP_004796643.1| - 0.024 14.3 0.0 0.099 12.3 0.0 1.9 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K_oxygenase PF13434.1 gi|344212323|ref|YP_004796643.1| - 0.027 13.4 0.0 0.14 11.0 0.0 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.12 gi|344212323|ref|YP_004796643.1| - 0.033 13.3 0.1 3.5 6.6 0.0 2.5 2 0 0 2 2 2 0 Thi4 family GHMP_kinases_N PF00288.21 gi|344212324|ref|YP_004796644.1| - 1.3e-06 28.3 2.4 6.8e-06 26.0 1.9 2.0 1 1 1 2 2 2 1 GHMP kinases N terminal domain Methyltransf_24 PF13578.1 gi|344212324|ref|YP_004796644.1| - 0.4 11.5 2.5 15 6.4 0.5 2.7 2 1 0 2 2 2 0 Methyltransferase domain Cob_adeno_trans PF01923.13 gi|344212325|ref|YP_004796645.1| - 1.8e-58 196.9 0.0 2.1e-58 196.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PMSR PF01625.16 gi|344212326|ref|YP_004796646.1| - 1.4e-44 151.7 0.0 1.8e-44 151.3 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase zf-H2C2_2 PF13465.1 gi|344212327|ref|YP_004796647.1| - 0.00087 19.4 4.3 0.01 16.1 0.1 2.1 2 0 0 2 2 2 1 Zinc-finger double domain DNA_ligase_ZBD PF03119.11 gi|344212327|ref|YP_004796647.1| - 0.01 15.5 4.4 0.084 12.5 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_3 PF14369.1 gi|344212327|ref|YP_004796647.1| - 0.022 14.7 4.7 0.066 13.2 0.1 2.2 1 1 1 2 2 2 0 zinc-finger zf-ribbon_3 PF13248.1 gi|344212327|ref|YP_004796647.1| - 0.022 13.9 0.4 3.7 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|344212327|ref|YP_004796647.1| - 0.034 13.5 0.0 0.04 13.2 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger PHD PF00628.24 gi|344212327|ref|YP_004796647.1| - 0.041 13.5 1.5 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 PHD-finger Auto_anti-p27 PF06677.7 gi|344212327|ref|YP_004796647.1| - 0.043 13.5 0.8 2.2 8.0 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1 PF03811.8 gi|344212327|ref|YP_004796647.1| - 0.066 12.7 0.5 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|344212327|ref|YP_004796647.1| - 0.099 11.9 0.6 7 6.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|344212327|ref|YP_004796647.1| - 0.1 12.3 1.6 0.14 11.9 1.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF1272 PF06906.6 gi|344212327|ref|YP_004796647.1| - 0.11 12.3 0.2 8.4 6.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-LITAF-like PF10601.4 gi|344212327|ref|YP_004796647.1| - 0.13 12.1 0.5 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Opy2 PF09463.5 gi|344212327|ref|YP_004796647.1| - 0.19 11.8 1.4 14 5.8 0.0 2.1 2 0 0 2 2 2 0 Opy2 protein zf-ISL3 PF14690.1 gi|344212327|ref|YP_004796647.1| - 0.25 11.3 3.5 8.6 6.4 0.1 2.1 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|344212327|ref|YP_004796647.1| - 0.26 11.1 1.9 1.4 8.8 1.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon RNHCP PF12647.2 gi|344212327|ref|YP_004796647.1| - 0.26 11.1 1.6 1.6 8.6 0.1 1.9 1 1 1 2 2 2 0 RNHCP domain DUF2296 PF10058.4 gi|344212327|ref|YP_004796647.1| - 0.33 10.7 1.5 5.8 6.7 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Rubredoxin PF00301.15 gi|344212327|ref|YP_004796647.1| - 0.38 10.6 6.9 0.42 10.5 0.7 2.2 1 1 1 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|344212327|ref|YP_004796647.1| - 0.85 9.3 7.6 2.6 7.7 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-MIZ PF02891.15 gi|344212327|ref|YP_004796647.1| - 1.8 8.1 6.0 7.2 6.2 4.1 1.8 1 1 0 1 1 1 0 MIZ/SP-RING zinc finger DUF4379 PF14311.1 gi|344212327|ref|YP_004796647.1| - 5 7.0 6.1 15 5.4 4.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4379) Response_reg PF00072.19 gi|344212329|ref|YP_004796649.1| - 2.6e-18 66.0 0.3 3.1e-18 65.8 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|344212330|ref|YP_004796650.1| - 2.7e-40 136.9 0.1 5e-13 49.3 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|344212330|ref|YP_004796650.1| - 6.7e-24 83.8 0.2 2.7e-09 36.8 0.0 4.1 4 0 0 4 4 4 3 PAS fold PAS_4 PF08448.5 gi|344212330|ref|YP_004796650.1| - 4.3e-23 81.4 9.4 6.4e-07 29.3 0.1 4.4 4 0 0 4 4 4 3 PAS fold GAF_3 PF13492.1 gi|344212330|ref|YP_004796650.1| - 7.1e-22 77.8 0.0 1.6e-11 44.3 0.0 3.1 2 0 0 2 2 2 2 GAF domain PAS_8 PF13188.1 gi|344212330|ref|YP_004796650.1| - 9.1e-22 76.1 0.4 7.7e-07 28.7 0.0 3.9 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|344212330|ref|YP_004796650.1| - 2.8e-19 68.8 0.1 5.7e-19 67.8 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|344212330|ref|YP_004796650.1| - 7.8e-18 65.3 0.3 2e-11 44.6 0.1 2.8 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.19 gi|344212330|ref|YP_004796650.1| - 1.3e-07 31.6 0.1 3.9e-07 30.0 0.0 1.8 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c_2 PF13581.1 gi|344212330|ref|YP_004796650.1| - 4.2e-07 29.8 0.3 2e-06 27.6 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|344212330|ref|YP_004796650.1| - 7.7e-07 29.1 0.0 0.0056 16.7 0.0 2.9 3 0 0 3 3 3 2 PAS fold HisKA PF00512.20 gi|344212330|ref|YP_004796650.1| - 1.6e-06 28.0 4.3 1.6e-06 28.0 3.0 3.1 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|344212330|ref|YP_004796650.1| - 0.0064 16.1 0.0 0.017 14.8 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|344212330|ref|YP_004796650.1| - 0.007 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|344212330|ref|YP_004796650.1| - 0.063 13.2 2.1 4.6 7.2 0.0 4.2 3 1 0 3 3 3 0 PAS fold Peptidase_S80 PF07230.6 gi|344212330|ref|YP_004796650.1| - 0.081 11.2 0.2 0.14 10.4 0.1 1.3 1 0 0 1 1 1 0 Bacteriophage T4-like capsid assembly protein (Gp20) DUF2870 PF11069.3 gi|344212330|ref|YP_004796650.1| - 0.096 12.7 0.2 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) HisKA_2 PF07568.7 gi|344212330|ref|YP_004796650.1| - 0.18 11.6 0.6 0.43 10.4 0.4 1.6 1 0 0 1 1 1 0 Histidine kinase Aminotran_5 PF00266.14 gi|344212331|ref|YP_004796651.1| - 6.8e-09 34.9 0.0 1e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|344212331|ref|YP_004796651.1| - 1.2e-07 30.7 0.0 4.1e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|344212331|ref|YP_004796651.1| - 0.00035 19.7 0.1 0.00056 19.1 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|344212332|ref|YP_004796652.1| - 2.5e-108 362.5 0.0 2.9e-108 362.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|344212332|ref|YP_004796652.1| - 1.6e-05 23.4 0.0 2.3e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GCV_H PF01597.14 gi|344212333|ref|YP_004796653.1| - 1.8e-42 143.8 0.0 1.9e-42 143.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|344212333|ref|YP_004796653.1| - 0.0084 15.7 0.2 0.015 14.8 0.0 1.5 2 0 0 2 2 2 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|344212333|ref|YP_004796653.1| - 0.013 15.2 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF2460 PF09343.5 gi|344212333|ref|YP_004796653.1| - 0.067 12.5 0.1 0.1 11.9 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) GCV_T PF01571.16 gi|344212334|ref|YP_004796654.1| - 3.6e-62 209.4 0.1 4.6e-62 209.1 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|344212334|ref|YP_004796654.1| - 1.9e-23 82.2 0.0 3.5e-23 81.4 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.7 gi|344212334|ref|YP_004796654.1| - 8e-05 22.5 0.0 0.0027 17.5 0.0 2.1 2 0 0 2 2 2 1 Sarcosine oxidase, gamma subunit family TrmE_N PF10396.4 gi|344212334|ref|YP_004796654.1| - 0.0024 17.8 0.0 0.0077 16.1 0.0 1.8 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus PAS_4 PF08448.5 gi|344212335|ref|YP_004796655.1| - 7.9e-26 90.2 7.8 5.2e-12 45.7 0.0 3.6 4 0 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|344212335|ref|YP_004796655.1| - 2.9e-25 88.6 0.0 3.1e-12 46.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|344212335|ref|YP_004796655.1| - 4.6e-20 71.5 0.0 5.6e-10 39.0 0.0 4.0 4 1 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|344212335|ref|YP_004796655.1| - 8.3e-15 54.6 0.0 1e-05 25.5 0.0 3.4 3 0 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|344212335|ref|YP_004796655.1| - 3e-11 43.0 0.0 7.2e-11 41.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|344212335|ref|YP_004796655.1| - 3e-07 30.0 0.0 1.3e-06 28.0 0.0 2.1 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|344212335|ref|YP_004796655.1| - 0.00013 21.9 0.2 0.00062 19.7 0.2 2.2 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|344212335|ref|YP_004796655.1| - 0.24 11.4 2.2 2.5 8.1 0.0 3.2 4 1 0 4 4 4 0 PAS fold NYN PF01936.13 gi|344212336|ref|YP_004796656.1| - 4.5e-19 69.1 0.1 5.1e-19 69.0 0.1 1.0 1 0 0 1 1 1 1 NYN domain Peripla_BP_4 PF13407.1 gi|344212336|ref|YP_004796656.1| - 0.00087 18.7 0.6 0.0011 18.3 0.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain CoA_binding_2 PF13380.1 gi|344212336|ref|YP_004796656.1| - 0.015 15.5 0.6 0.032 14.4 0.3 1.6 1 1 1 2 2 2 0 CoA binding domain Peripla_BP_1 PF00532.16 gi|344212336|ref|YP_004796656.1| - 0.086 12.0 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family TPK_catalytic PF04263.11 gi|344212336|ref|YP_004796656.1| - 0.11 12.0 0.2 0.16 11.5 0.1 1.2 1 0 0 1 1 1 0 Thiamin pyrophosphokinase, catalytic domain TatD_DNase PF01026.16 gi|344212337|ref|YP_004796657.1| - 6.2e-18 64.9 0.0 5.1e-13 48.8 0.0 2.1 1 1 1 2 2 2 2 TatD related DNase ABC_tran PF00005.22 gi|344212338|ref|YP_004796658.1| - 9.6e-30 103.6 0.0 1.6e-29 102.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212338|ref|YP_004796658.1| - 1.8e-13 51.1 0.0 1.1e-10 41.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344212338|ref|YP_004796658.1| - 7.2e-09 35.1 0.3 1.2e-07 31.2 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|344212338|ref|YP_004796658.1| - 6.3e-05 22.1 0.0 0.061 12.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|344212338|ref|YP_004796658.1| - 0.00021 21.4 0.0 0.00056 20.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344212338|ref|YP_004796658.1| - 0.00023 21.5 0.1 0.0031 17.8 0.0 2.3 2 2 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|344212338|ref|YP_004796658.1| - 0.0014 17.7 0.0 0.0028 16.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|344212338|ref|YP_004796658.1| - 0.0016 17.9 0.0 0.0043 16.5 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344212338|ref|YP_004796658.1| - 0.0018 18.2 0.8 0.0099 15.8 0.6 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|344212338|ref|YP_004796658.1| - 0.0024 17.7 0.0 0.0035 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344212338|ref|YP_004796658.1| - 0.016 14.5 0.3 0.09 12.1 0.2 2.4 1 1 0 1 1 1 0 AAA domain DeoRC PF00455.17 gi|344212338|ref|YP_004796658.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|344212338|ref|YP_004796658.1| - 0.02 14.3 0.3 0.12 11.7 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain ABC_ATPase PF09818.4 gi|344212338|ref|YP_004796658.1| - 0.027 13.0 0.2 3.8 5.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.10 gi|344212338|ref|YP_004796658.1| - 0.049 12.3 0.0 0.072 11.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|344212338|ref|YP_004796658.1| - 0.061 14.1 0.5 0.25 12.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|344212338|ref|YP_004796658.1| - 0.071 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|344212338|ref|YP_004796658.1| - 0.095 12.4 0.0 18 5.1 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|344212338|ref|YP_004796658.1| - 0.16 11.6 0.2 0.91 9.1 0.1 2.1 1 1 0 1 1 1 0 Archaeal ATPase BPD_transp_1 PF00528.17 gi|344212339|ref|YP_004796659.1| - 2.3e-21 76.1 13.3 2.3e-21 76.1 9.2 5.1 1 1 2 4 4 4 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344212340|ref|YP_004796660.1| - 4.2e-16 58.9 17.5 4.2e-16 58.9 12.1 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|344212341|ref|YP_004796661.1| - 5e-32 111.4 0.8 8.3e-32 110.7 0.5 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|344212341|ref|YP_004796661.1| - 7.3e-19 67.4 0.0 1.1e-18 66.9 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|344212341|ref|YP_004796661.1| - 0.00018 21.3 0.4 0.19 11.4 0.0 2.3 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344212341|ref|YP_004796661.1| - 0.0034 17.2 2.2 0.0062 16.4 1.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RecT PF03837.9 gi|344212341|ref|YP_004796661.1| - 0.015 14.5 1.3 0.75 9.0 0.2 2.2 2 0 0 2 2 2 0 RecT family PhoU PF01895.14 gi|344212342|ref|YP_004796662.1| - 3.3e-25 88.3 4.9 8.6e-18 64.5 0.3 2.6 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|344212342|ref|YP_004796662.1| - 1.7e-08 34.0 0.0 3.2e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF948 PF06103.6 gi|344212342|ref|YP_004796662.1| - 0.0021 17.8 2.1 3.7 7.4 0.1 3.6 4 0 0 4 4 4 1 Bacterial protein of unknown function (DUF948) ISG65-75 PF11727.3 gi|344212342|ref|YP_004796662.1| - 0.014 14.5 0.1 0.022 13.8 0.1 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein HisKA_3 PF07730.8 gi|344212342|ref|YP_004796662.1| - 4.1 7.8 9.1 19 5.6 0.0 3.7 2 2 2 4 4 4 0 Histidine kinase Ribosomal_S8e PF01201.17 gi|344212343|ref|YP_004796663.1| - 4.2e-33 114.2 5.7 4.6e-33 114.1 3.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.4 gi|344212344|ref|YP_004796664.1| - 3.5e-54 182.1 0.5 3.9e-54 181.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF373 PF04123.8 gi|344212346|ref|YP_004796666.1| - 0.083 11.8 6.2 0.24 10.3 4.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF373) ATP1G1_PLM_MAT8 PF02038.11 gi|344212346|ref|YP_004796666.1| - 7 5.7 6.9 1.2 8.2 0.1 2.6 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF4231 PF14015.1 gi|344212346|ref|YP_004796666.1| - 8.9 6.3 12.7 0.64 10.0 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) OMPdecase PF00215.19 gi|344212347|ref|YP_004796667.1| - 1.9e-33 115.7 0.0 2.4e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|344212347|ref|YP_004796667.1| - 0.077 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2859) zf-C2HC5 PF06221.8 gi|344212348|ref|YP_004796668.1| - 0.00031 20.4 0.4 0.00031 20.4 0.3 1.6 1 1 1 2 2 2 1 Putative zinc finger motif, C2HC5-type DZR PF12773.2 gi|344212348|ref|YP_004796668.1| - 0.0046 16.7 5.0 0.011 15.5 3.5 1.6 1 1 0 1 1 1 1 Double zinc ribbon zf-HIT PF04438.11 gi|344212348|ref|YP_004796668.1| - 0.017 14.7 5.0 0.024 14.2 1.0 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-B_box PF00643.19 gi|344212348|ref|YP_004796668.1| - 0.078 12.8 1.8 0.078 12.8 1.3 2.0 2 0 0 2 2 2 0 B-box zinc finger zf-HYPF PF07503.7 gi|344212348|ref|YP_004796668.1| - 0.61 9.5 0.0 0.61 9.5 0.0 2.8 2 1 1 3 3 3 0 HypF finger zf-C3HC4_2 PF13923.1 gi|344212348|ref|YP_004796668.1| - 0.63 10.1 6.1 1.4 8.9 4.2 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-AN1 PF01428.11 gi|344212348|ref|YP_004796668.1| - 0.92 9.4 6.7 2.4 8.0 4.7 1.7 1 1 0 1 1 1 0 AN1-like Zinc finger Prok-RING_4 PF14447.1 gi|344212348|ref|YP_004796668.1| - 1 8.9 5.6 1.8 8.1 3.9 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 FYVE PF01363.16 gi|344212348|ref|YP_004796668.1| - 2 8.3 9.6 15 5.5 6.6 2.1 1 1 0 1 1 1 0 FYVE zinc finger Prok-RING_2 PF14445.1 gi|344212348|ref|YP_004796668.1| - 2.3 8.2 7.5 4 7.4 5.2 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 zf-LITAF-like PF10601.4 gi|344212348|ref|YP_004796668.1| - 2.8 7.8 8.3 2.9 7.8 2.9 2.3 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Ribosomal_S27e PF01667.12 gi|344212348|ref|YP_004796668.1| - 3.6 7.2 6.6 7.4 6.1 0.1 2.6 2 1 0 2 2 2 0 Ribosomal protein S27 zf-C3HC4_3 PF13920.1 gi|344212348|ref|YP_004796668.1| - 4.6 7.0 8.5 14 5.4 5.9 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PAP2 PF01569.16 gi|344212349|ref|YP_004796669.1| - 0.13 11.9 2.5 0.15 11.7 1.7 1.1 1 0 0 1 1 1 0 PAP2 superfamily Virul_fac_BrkB PF03631.10 gi|344212349|ref|YP_004796669.1| - 0.55 9.5 10.4 0.65 9.3 7.2 1.2 1 0 0 1 1 1 0 Virulence factor BrkB EIID-AGA PF03613.9 gi|344212349|ref|YP_004796669.1| - 1.4 7.7 6.9 1.6 7.5 4.8 1.0 1 0 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component Fzo_mitofusin PF04799.8 gi|344212349|ref|YP_004796669.1| - 1.4 8.2 4.5 1.5 8.2 3.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region O-antigen_lig PF13425.1 gi|344212349|ref|YP_004796669.1| - 2 8.4 10.3 2.2 8.2 7.1 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Phage_holin_2 PF04550.7 gi|344212349|ref|YP_004796669.1| - 5.1 7.2 9.2 18 5.5 6.4 1.8 1 1 0 1 1 1 0 Phage holin family 2 DUF4131 PF13567.1 gi|344212349|ref|YP_004796669.1| - 8 5.8 10.8 8.7 5.7 7.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) FUSC-like PF12805.2 gi|344212349|ref|YP_004796669.1| - 8.9 5.1 8.0 10 4.9 5.5 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS VIT1 PF01988.14 gi|344212349|ref|YP_004796669.1| - 9.5 5.6 8.8 12 5.2 6.1 1.3 1 1 0 1 1 1 0 VIT family GATase PF00117.23 gi|344212350|ref|YP_004796670.1| - 1.1e-44 152.1 0.0 1.3e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|344212350|ref|YP_004796670.1| - 2e-08 33.9 0.1 4.9e-08 32.6 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|344212351|ref|YP_004796671.1| - 5.3e-91 304.5 0.0 1.1e-90 303.4 0.0 1.5 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|344212351|ref|YP_004796671.1| - 3.3e-21 75.7 0.2 3.5e-20 72.4 0.1 2.4 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|344212352|ref|YP_004796672.1| - 1.2e-35 122.8 0.6 1.4e-35 122.6 0.4 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMP-TENI PF02581.12 gi|344212352|ref|YP_004796672.1| - 0.00072 18.7 0.9 0.0045 16.1 0.0 2.3 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|344212352|ref|YP_004796672.1| - 0.0043 16.2 1.4 0.0043 16.2 1.0 2.0 1 1 1 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.16 gi|344212352|ref|YP_004796672.1| - 0.015 14.6 1.5 0.032 13.4 0.2 2.1 2 1 0 2 2 2 0 Histidine biosynthesis protein G3P_antiterm PF04309.7 gi|344212352|ref|YP_004796672.1| - 0.042 12.8 1.6 0.49 9.4 0.0 2.7 3 0 0 3 3 3 0 Glycerol-3-phosphate responsive antiterminator BtpA PF03437.10 gi|344212352|ref|YP_004796672.1| - 0.042 13.1 0.4 0.082 12.1 0.1 1.7 1 1 1 2 2 2 0 BtpA family Glycos_transf_3 PF00591.16 gi|344212353|ref|YP_004796673.1| - 1.6e-101 338.9 1.9 2.2e-101 338.5 1.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|344212353|ref|YP_004796673.1| - 6.8e-20 70.4 2.1 1.5e-19 69.3 1.5 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|344212353|ref|YP_004796673.1| - 0.0097 15.3 0.0 0.033 13.6 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) PadR PF03551.9 gi|344212355|ref|YP_004796675.1| - 0.001 18.7 0.1 0.0049 16.5 0.1 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|344212355|ref|YP_004796675.1| - 0.051 13.9 0.0 0.085 13.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|344212355|ref|YP_004796675.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CBS PF00571.23 gi|344212358|ref|YP_004796678.1| - 1.6e-46 155.8 15.5 2.6e-15 55.9 2.1 4.3 4 0 0 4 4 4 4 CBS domain DUF3010 PF11215.3 gi|344212358|ref|YP_004796678.1| - 0.0071 16.2 0.2 0.027 14.3 0.1 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3010) Ribosomal_S30AE PF02482.14 gi|344212358|ref|YP_004796678.1| - 0.02 15.3 0.8 0.049 14.0 0.1 2.0 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Surf_Ag_VNR PF07244.10 gi|344212358|ref|YP_004796678.1| - 0.041 14.2 0.0 0.3 11.5 0.0 2.3 2 0 0 2 2 2 0 Surface antigen variable number repeat ADH_zinc_N PF00107.21 gi|344212359|ref|YP_004796679.1| - 2.9e-18 65.6 0.0 4.3e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|344212359|ref|YP_004796679.1| - 1.3e-08 35.7 0.0 2.8e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.20 gi|344212359|ref|YP_004796679.1| - 0.058 13.3 0.4 0.21 11.4 0.1 2.1 2 0 0 2 2 2 0 short chain dehydrogenase Epimerase PF01370.16 gi|344212359|ref|YP_004796679.1| - 0.082 12.3 0.1 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ELFV_dehydrog PF00208.16 gi|344212359|ref|YP_004796679.1| - 0.12 11.8 0.1 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AAA PF00004.24 gi|344212360|ref|YP_004796680.1| - 3.1e-100 331.5 0.0 1.4e-49 167.6 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|344212360|ref|YP_004796680.1| - 5.4e-29 99.9 0.0 3.8e-28 97.2 0.1 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain CDC48_2 PF02933.12 gi|344212360|ref|YP_004796680.1| - 1.8e-15 56.3 0.0 6.5e-15 54.5 0.0 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.7 gi|344212360|ref|YP_004796680.1| - 8e-15 54.5 0.1 6.2e-07 28.6 0.0 2.5 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|344212360|ref|YP_004796680.1| - 2.2e-14 53.8 0.0 4.8e-07 29.9 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|344212360|ref|YP_004796680.1| - 3.3e-13 49.8 0.2 0.00047 20.2 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|344212360|ref|YP_004796680.1| - 3.7e-13 49.3 1.9 5.5e-05 22.9 0.0 4.0 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|344212360|ref|YP_004796680.1| - 4.2e-13 49.5 0.0 1.2e-05 25.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|344212360|ref|YP_004796680.1| - 6.4e-12 46.3 0.1 0.00015 22.5 0.0 3.2 4 0 0 4 4 2 2 AAA domain AAA_33 PF13671.1 gi|344212360|ref|YP_004796680.1| - 2.9e-11 43.4 0.0 3.1e-05 23.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|344212360|ref|YP_004796680.1| - 1.2e-10 40.7 0.0 0.00028 19.7 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|344212360|ref|YP_004796680.1| - 3.5e-09 36.2 1.6 0.0012 18.5 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|344212360|ref|YP_004796680.1| - 7e-09 35.6 0.0 0.0019 18.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|344212360|ref|YP_004796680.1| - 3.1e-08 33.2 0.0 0.0057 16.1 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|344212360|ref|YP_004796680.1| - 2.1e-07 31.3 0.0 0.0072 16.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|344212360|ref|YP_004796680.1| - 3.7e-07 29.4 0.0 0.035 13.1 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|344212360|ref|YP_004796680.1| - 9.5e-07 28.1 0.1 0.043 12.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|344212360|ref|YP_004796680.1| - 1.1e-06 28.7 0.0 0.048 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|344212360|ref|YP_004796680.1| - 1.8e-06 28.0 0.0 0.015 15.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|344212360|ref|YP_004796680.1| - 1.9e-06 27.3 11.6 0.41 10.0 0.1 4.6 3 2 2 5 5 4 2 AAA domain Sigma54_activat PF00158.21 gi|344212360|ref|YP_004796680.1| - 2.1e-06 27.3 0.1 0.11 12.0 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|344212360|ref|YP_004796680.1| - 2.6e-06 27.3 0.0 0.065 12.9 0.0 3.7 2 2 1 3 3 3 1 Archaeal ATPase AAA_3 PF07726.6 gi|344212360|ref|YP_004796680.1| - 4.6e-06 26.2 0.0 0.075 12.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|344212360|ref|YP_004796680.1| - 4.9e-06 25.9 0.6 0.16 11.1 0.0 3.4 3 0 0 3 3 3 2 PhoH-like protein NB-ARC PF00931.17 gi|344212360|ref|YP_004796680.1| - 1.6e-05 23.9 0.0 0.036 12.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|344212360|ref|YP_004796680.1| - 3e-05 24.0 0.0 0.28 11.2 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|344212360|ref|YP_004796680.1| - 4e-05 23.9 0.0 0.4 10.9 0.0 2.6 2 0 0 2 2 2 2 ABC transporter KaiC PF06745.8 gi|344212360|ref|YP_004796680.1| - 4e-05 22.8 3.0 0.41 9.7 0.0 3.7 3 1 1 4 4 4 2 KaiC AAA_24 PF13479.1 gi|344212360|ref|YP_004796680.1| - 4.1e-05 23.2 1.4 0.061 12.8 0.0 2.7 3 0 0 3 3 2 2 AAA domain DUF815 PF05673.8 gi|344212360|ref|YP_004796680.1| - 6.3e-05 22.0 0.0 0.2 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.7 gi|344212360|ref|YP_004796680.1| - 6.9e-05 22.5 0.2 0.26 10.9 0.0 3.5 4 0 0 4 4 4 1 NACHT domain AAA_30 PF13604.1 gi|344212360|ref|YP_004796680.1| - 8.6e-05 22.2 0.0 0.55 9.7 0.0 2.9 2 0 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|344212360|ref|YP_004796680.1| - 0.00025 20.1 0.0 0.27 10.1 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Parvo_NS1 PF01057.12 gi|344212360|ref|YP_004796680.1| - 0.00026 19.9 0.1 0.31 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|344212360|ref|YP_004796680.1| - 0.00041 20.0 0.0 0.5 9.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain SKI PF01202.17 gi|344212360|ref|YP_004796680.1| - 0.0006 19.7 0.0 0.36 10.6 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|344212360|ref|YP_004796680.1| - 0.0006 19.5 0.4 2 8.1 0.0 3.3 2 1 0 3 3 3 2 NTPase IPT PF01745.11 gi|344212360|ref|YP_004796680.1| - 0.0017 17.5 0.8 0.55 9.3 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|344212360|ref|YP_004796680.1| - 0.0017 17.9 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 KAP_NTPase PF07693.9 gi|344212360|ref|YP_004796680.1| - 0.0022 17.0 0.0 2.9 6.7 0.0 3.1 2 2 0 3 3 3 0 KAP family P-loop domain Bac_DnaA PF00308.13 gi|344212360|ref|YP_004796680.1| - 0.0035 17.0 0.0 3.5 7.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein ResIII PF04851.10 gi|344212360|ref|YP_004796680.1| - 0.0047 16.7 0.0 3.3 7.5 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|344212360|ref|YP_004796680.1| - 0.015 14.8 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CPT PF07931.7 gi|344212360|ref|YP_004796680.1| - 0.019 14.5 0.0 3.2 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AFG1_ATPase PF03969.11 gi|344212360|ref|YP_004796680.1| - 0.031 13.0 0.0 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase T2SE PF00437.15 gi|344212360|ref|YP_004796680.1| - 0.05 12.5 0.0 7.4 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|344212360|ref|YP_004796680.1| - 0.05 12.7 0.0 11 5.0 0.0 2.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Cytidylate_kin2 PF13189.1 gi|344212360|ref|YP_004796680.1| - 0.051 13.4 0.0 1.8 8.4 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family Torsin PF06309.6 gi|344212360|ref|YP_004796680.1| - 0.06 13.2 0.0 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Torsin Guanylate_kin PF00625.16 gi|344212360|ref|YP_004796680.1| - 0.098 12.0 0.4 39 3.6 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase MSV199 PF10553.4 gi|344212360|ref|YP_004796680.1| - 0.14 12.0 0.1 0.69 9.8 0.0 2.0 2 0 0 2 2 2 0 MSV199 domain Usp PF00582.21 gi|344212361|ref|YP_004796681.1| - 5.4e-08 33.1 2.0 9.3e-08 32.3 1.4 1.4 1 1 0 1 1 1 1 Universal stress protein family ADH_zinc_N PF00107.21 gi|344212361|ref|YP_004796681.1| - 0.06 12.8 0.7 0.22 11.0 0.5 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Glyco_hydro_3_C PF01915.17 gi|344212361|ref|YP_004796681.1| - 0.16 11.4 1.9 0.26 10.7 0.9 1.6 1 1 1 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain DUF111 PF01969.12 gi|344212362|ref|YP_004796682.1| - 1.2e-138 462.1 0.8 1.4e-138 461.8 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 SelP_N PF04592.9 gi|344212362|ref|YP_004796682.1| - 0.00019 20.9 4.9 0.00028 20.3 3.4 1.2 1 0 0 1 1 1 1 Selenoprotein P, N terminal region Transcrip_reg PF01709.15 gi|344212362|ref|YP_004796682.1| - 0.11 11.6 0.0 0.24 10.5 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator DUF348 PF03990.9 gi|344212363|ref|YP_004796683.1| - 0.0022 17.5 0.5 0.75 9.4 0.1 2.9 3 0 0 3 3 3 2 Domain of unknown function (DUF348) DUF460 PF04312.8 gi|344212363|ref|YP_004796683.1| - 0.05 13.1 0.6 0.085 12.3 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF460) bPH_6 PF10756.4 gi|344212364|ref|YP_004796684.1| - 0.24 11.3 5.0 0.15 12.0 1.1 2.3 2 1 0 2 2 2 0 Bacterial PH domain Rad51 PF08423.6 gi|344212365|ref|YP_004796685.1| - 1e-24 86.8 0.0 1.4e-24 86.3 0.0 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|344212365|ref|YP_004796685.1| - 5.2e-16 58.6 0.8 7.4e-16 58.1 0.5 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|344212365|ref|YP_004796685.1| - 1e-11 44.4 0.8 1.5e-11 43.9 0.6 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|344212365|ref|YP_004796685.1| - 2.3e-10 40.0 0.0 6.2e-10 38.5 0.0 1.6 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|344212365|ref|YP_004796685.1| - 1.1e-06 28.3 0.0 1.3e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.1 gi|344212365|ref|YP_004796685.1| - 0.00096 18.7 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|344212365|ref|YP_004796685.1| - 0.0013 18.4 0.4 0.0028 17.3 0.2 1.6 1 1 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|344212365|ref|YP_004796685.1| - 0.0013 18.1 0.4 0.005 16.2 0.1 1.9 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|344212365|ref|YP_004796685.1| - 0.0039 16.6 0.1 0.072 12.5 0.0 2.1 1 1 0 2 2 2 1 AAA-like domain DnaB_C PF03796.10 gi|344212365|ref|YP_004796685.1| - 0.011 14.6 0.1 0.023 13.5 0.0 1.7 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain Isochorismatase PF00857.15 gi|344212365|ref|YP_004796685.1| - 0.048 13.5 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Isochorismatase family PhoU PF01895.14 gi|344212366|ref|YP_004796686.1| - 1.4e-33 115.1 16.9 3.6e-20 72.1 1.1 2.2 2 0 0 2 2 2 2 PhoU domain Trigger_N PF05697.8 gi|344212366|ref|YP_004796686.1| - 0.0099 15.6 0.2 0.05 13.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial trigger factor protein (TF) ATP-synt_D PF01813.12 gi|344212366|ref|YP_004796686.1| - 0.037 13.5 2.0 4.2 6.8 0.1 2.3 1 1 1 2 2 2 0 ATP synthase subunit D TrkA_N PF02254.13 gi|344212368|ref|YP_004796688.1| - 2.1e-51 172.7 11.7 1.8e-25 89.2 0.3 3.2 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|344212368|ref|YP_004796688.1| - 6.2e-31 105.8 11.4 3.8e-16 58.4 0.4 3.7 3 1 0 3 3 3 2 TrkA-C domain NAD_binding_7 PF13241.1 gi|344212368|ref|YP_004796688.1| - 5.1e-11 42.7 2.2 0.00012 22.2 0.0 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|344212368|ref|YP_004796688.1| - 1.6e-09 38.0 1.0 0.00029 20.9 0.1 2.5 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|344212368|ref|YP_004796688.1| - 1.6e-07 30.7 0.2 8.7e-05 21.7 0.0 2.9 3 0 0 3 3 3 1 FAD binding domain CPSase_L_chain PF00289.17 gi|344212368|ref|YP_004796688.1| - 8e-07 29.1 1.8 0.48 10.5 0.0 3.4 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, N-terminal domain F420_oxidored PF03807.12 gi|344212368|ref|YP_004796688.1| - 1.1e-05 25.7 0.4 0.018 15.4 0.1 3.7 2 2 2 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|344212368|ref|YP_004796688.1| - 1.2e-05 24.7 0.1 0.00019 20.8 0.1 2.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Saccharop_dh PF03435.13 gi|344212368|ref|YP_004796688.1| - 3.3e-05 23.0 2.7 0.0028 16.6 0.4 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|344212368|ref|YP_004796688.1| - 4.1e-05 23.3 0.5 0.0019 17.8 0.1 2.6 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|344212368|ref|YP_004796688.1| - 4.6e-05 22.9 0.1 4.6e-05 22.9 0.1 3.7 3 2 1 4 4 4 1 Zinc-binding dehydrogenase ThiF PF00899.16 gi|344212368|ref|YP_004796688.1| - 6.8e-05 22.7 4.8 0.0057 16.4 0.1 3.7 2 2 1 4 4 4 1 ThiF family Pyr_redox PF00070.22 gi|344212368|ref|YP_004796688.1| - 0.00016 22.0 0.2 0.71 10.3 0.0 3.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|344212368|ref|YP_004796688.1| - 0.00025 21.3 0.6 0.16 12.2 0.0 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain HEM4 PF02602.10 gi|344212368|ref|YP_004796688.1| - 0.00027 20.2 0.1 0.0014 17.9 0.0 2.0 2 1 0 2 2 2 1 Uroporphyrinogen-III synthase HemD GFO_IDH_MocA PF01408.17 gi|344212368|ref|YP_004796688.1| - 0.0004 20.8 1.3 0.017 15.6 0.2 3.0 3 1 0 3 3 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|344212368|ref|YP_004796688.1| - 0.00059 19.7 0.1 0.048 13.5 0.0 2.6 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|344212368|ref|YP_004796688.1| - 0.0015 17.7 0.0 0.35 10.0 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|344212368|ref|YP_004796688.1| - 0.0021 17.9 0.5 2.7 7.8 0.0 2.8 2 2 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|344212368|ref|YP_004796688.1| - 0.0035 17.0 0.0 0.16 11.7 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|344212368|ref|YP_004796688.1| - 0.0039 16.6 0.1 0.046 13.1 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DUF1188 PF06690.6 gi|344212368|ref|YP_004796688.1| - 0.0041 16.2 0.0 0.011 14.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Oxidored_nitro PF00148.14 gi|344212368|ref|YP_004796688.1| - 0.005 15.5 1.0 0.012 14.2 0.0 2.0 2 1 0 2 2 2 1 Nitrogenase component 1 type Oxidoreductase DAO PF01266.19 gi|344212368|ref|YP_004796688.1| - 0.0059 15.5 1.4 0.81 8.5 0.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase Nitro_FeMo-Co PF02579.12 gi|344212368|ref|YP_004796688.1| - 0.0092 16.0 1.3 5.3 7.1 0.0 3.7 4 0 0 4 4 3 0 Dinitrogenase iron-molybdenum cofactor AlaDh_PNT_C PF01262.16 gi|344212368|ref|YP_004796688.1| - 0.022 14.3 1.8 4.3 6.8 0.2 2.9 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.1 gi|344212368|ref|YP_004796688.1| - 0.084 12.9 0.0 12 6.0 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain YflT PF11181.3 gi|344212368|ref|YP_004796688.1| - 0.11 12.6 1.5 0.45 10.6 0.1 2.7 2 1 1 3 3 3 0 Heat induced stress protein YflT AdoHcyase_NAD PF00670.16 gi|344212368|ref|YP_004796688.1| - 0.2 11.4 3.8 0.41 10.4 1.3 2.4 2 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UvrB PF12344.3 gi|344212369|ref|YP_004796689.1| - 0.13 11.8 0.4 0.18 11.3 0.3 1.3 1 0 0 1 1 1 0 Ultra-violet resistance protein B HTH_24 PF13412.1 gi|344212371|ref|YP_004796691.1| - 0.00059 19.1 0.0 0.0013 18.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344212371|ref|YP_004796691.1| - 0.0017 17.8 0.0 0.0041 16.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|344212371|ref|YP_004796691.1| - 0.0096 15.5 0.0 0.026 14.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|344212371|ref|YP_004796691.1| - 0.05 13.9 0.1 0.14 12.4 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|344212371|ref|YP_004796691.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344212371|ref|YP_004796691.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|344212372|ref|YP_004796692.1| - 4.4e-14 51.7 0.0 7e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|344212372|ref|YP_004796692.1| - 7.2e-06 25.2 0.0 1.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344212372|ref|YP_004796692.1| - 0.00021 20.8 0.0 0.00043 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|344212372|ref|YP_004796692.1| - 0.002 17.3 0.0 0.0043 16.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|344212372|ref|YP_004796692.1| - 0.0031 17.3 0.0 0.0075 16.0 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|344212372|ref|YP_004796692.1| - 0.004 16.6 0.3 0.012 15.1 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|344212372|ref|YP_004796692.1| - 0.0076 15.6 0.0 0.016 14.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|344212372|ref|YP_004796692.1| - 0.015 14.9 0.2 0.4 10.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.1 gi|344212372|ref|YP_004796692.1| - 0.025 14.1 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|344212372|ref|YP_004796692.1| - 0.033 13.8 0.0 0.07 12.8 0.0 1.6 1 0 0 1 1 1 0 MarR family Phage_CI_repr PF07022.8 gi|344212372|ref|YP_004796692.1| - 0.035 14.1 0.0 0.061 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_19 PF12844.2 gi|344212372|ref|YP_004796692.1| - 0.16 12.0 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4330 PF14221.1 gi|344212373|ref|YP_004796693.1| - 6.7e-29 100.8 12.2 3.5e-09 36.7 1.2 5.1 4 1 1 5 5 5 5 Domain of unknown function (DUF4330) HlyD_3 PF13437.1 gi|344212373|ref|YP_004796693.1| - 0.00028 21.1 6.3 0.6 10.4 0.1 4.3 4 1 0 4 4 4 2 HlyD family secretion protein DUF4238 PF14022.1 gi|344212374|ref|YP_004796694.1| - 0.069 12.4 0.0 0.081 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) Glyco_tranf_2_3 PF13641.1 gi|344212376|ref|YP_004796696.1| - 2.2e-06 27.6 0.6 6.4e-06 26.1 0.4 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|344212376|ref|YP_004796696.1| - 0.00022 21.0 0.2 0.00041 20.1 0.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|344212376|ref|YP_004796696.1| - 0.0008 19.1 0.1 0.00098 18.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_7C PF02709.9 gi|344212376|ref|YP_004796696.1| - 0.079 12.4 0.0 0.17 11.3 0.0 1.5 1 1 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_tranf_2_2 PF10111.4 gi|344212376|ref|YP_004796696.1| - 0.12 11.4 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|344212378|ref|YP_004796698.1| - 2.8e-39 134.3 0.0 3.8e-39 133.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344212378|ref|YP_004796698.1| - 4.9e-21 75.3 0.0 8.1e-21 74.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344212378|ref|YP_004796698.1| - 2.7e-13 50.0 0.0 5e-13 49.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344212378|ref|YP_004796698.1| - 0.00041 20.5 0.5 0.0026 17.9 0.1 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344212378|ref|YP_004796698.1| - 0.0012 18.5 0.0 0.03 14.0 0.0 2.5 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Nif11 PF07862.6 gi|344212378|ref|YP_004796698.1| - 0.011 15.6 0.4 4 7.4 0.0 2.6 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function Sulfatase PF00884.18 gi|344212379|ref|YP_004796699.1| - 7.3e-47 160.0 0.3 1e-46 159.5 0.2 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|344212379|ref|YP_004796699.1| - 7.5e-19 68.2 0.3 4.3e-09 36.1 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|344212379|ref|YP_004796699.1| - 0.003 16.0 0.0 0.0045 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF229) VirE3 PF06661.6 gi|344212379|ref|YP_004796699.1| - 0.096 11.7 0.0 0.16 11.0 0.0 1.2 1 0 0 1 1 1 0 VirE3 DDE_Tnp_IS1595 PF12762.2 gi|344212380|ref|YP_004796700.1| - 5.9e-20 71.6 0.0 1e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 ISXO2-like transposase domain NGP1NT PF08153.7 gi|344212380|ref|YP_004796700.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 NGP1NT (NUC091) domain Glycos_transf_1 PF00534.15 gi|344212382|ref|YP_004796702.1| - 5.8e-15 55.1 0.1 1.8e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344212382|ref|YP_004796702.1| - 3.6e-09 36.5 0.0 1.4e-08 34.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|344212382|ref|YP_004796702.1| - 4.7e-08 33.2 0.0 1.4e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_hydro_11 PF00457.12 gi|344212382|ref|YP_004796702.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 11 Glycos_transf_1 PF00534.15 gi|344212383|ref|YP_004796703.1| - 6.9e-39 133.0 0.0 1.4e-38 132.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344212383|ref|YP_004796703.1| - 3.5e-17 62.8 0.0 7.1e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|344212383|ref|YP_004796703.1| - 8.1e-11 42.0 0.0 2.1e-10 40.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344212383|ref|YP_004796703.1| - 1.1e-08 34.9 2.0 1.2e-07 31.6 1.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|344212383|ref|YP_004796703.1| - 2.3e-07 31.0 0.0 3.8e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|344212383|ref|YP_004796703.1| - 1e-05 25.3 0.1 0.12 12.1 0.0 2.7 3 0 0 3 3 3 2 Glycosyl transferase 4-like Glyco_hydro_88 PF07470.8 gi|344212384|ref|YP_004796704.1| - 3.3e-18 65.8 7.4 4.4e-18 65.4 5.1 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Prenyltrans_1 PF13243.1 gi|344212384|ref|YP_004796704.1| - 2e-07 30.9 12.4 2.1e-05 24.4 0.2 4.4 1 1 4 5 5 5 3 Prenyltransferase-like Prenyltrans_2 PF13249.1 gi|344212384|ref|YP_004796704.1| - 5e-07 30.1 4.9 0.0085 16.4 0.4 4.2 1 1 4 5 5 5 4 Prenyltransferase-like DUF1680 PF07944.7 gi|344212384|ref|YP_004796704.1| - 7.6e-06 24.4 0.1 0.079 11.2 0.0 2.8 1 1 2 3 3 3 3 Putative glycosyl hydrolase of unknown function (DUF1680) Glyco_hydro_76 PF03663.9 gi|344212384|ref|YP_004796704.1| - 8e-05 22.1 10.2 0.0039 16.6 2.0 3.4 1 1 1 2 2 2 2 Glycosyl hydrolase family 76 Pec_lyase PF09492.5 gi|344212384|ref|YP_004796704.1| - 0.00032 19.9 0.2 1.9 7.5 0.0 4.2 3 1 1 5 5 5 1 Pectic acid lyase Prenyltrans PF00432.16 gi|344212384|ref|YP_004796704.1| - 0.00095 18.6 0.5 6.8 6.3 0.0 3.7 3 0 0 3 3 3 1 Prenyltransferase and squalene oxidase repeat Glycos_transf_1 PF00534.15 gi|344212386|ref|YP_004796706.1| - 2.7e-25 88.7 0.0 4.4e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344212386|ref|YP_004796706.1| - 5.1e-21 75.2 0.0 8.8e-21 74.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344212386|ref|YP_004796706.1| - 4.1e-15 56.2 0.0 5.9e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|344212386|ref|YP_004796706.1| - 6.9e-10 39.0 0.0 1.7e-09 37.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|344212386|ref|YP_004796706.1| - 2e-09 37.4 0.0 4.1e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Methyltransf_24 PF13578.1 gi|344212387|ref|YP_004796707.1| - 4.8e-16 59.5 0.1 6.9e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CmcI PF04989.7 gi|344212387|ref|YP_004796707.1| - 2.3e-11 43.4 0.0 2.9e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Cephalosporin hydroxylase FtsJ PF01728.14 gi|344212387|ref|YP_004796707.1| - 7.9e-06 25.9 0.0 9.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.1 gi|344212387|ref|YP_004796707.1| - 0.0016 18.1 0.0 0.0025 17.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|344212387|ref|YP_004796707.1| - 0.0019 17.3 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase DUF1257 PF06868.6 gi|344212387|ref|YP_004796707.1| - 0.12 12.2 0.1 1.1 9.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1257) Polysacc_synt PF01943.12 gi|344212388|ref|YP_004796708.1| - 9.1e-34 116.9 30.0 3.1e-33 115.2 7.3 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|344212388|ref|YP_004796708.1| - 6.8e-26 91.2 10.2 6.8e-26 91.2 7.1 2.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Orai-1 PF07856.7 gi|344212388|ref|YP_004796708.1| - 0.014 15.0 0.6 0.014 15.0 0.4 2.1 2 2 0 2 2 2 0 Mediator of CRAC channel activity YfzA PF14118.1 gi|344212388|ref|YP_004796708.1| - 0.7 10.0 4.3 0.98 9.5 0.2 3.1 3 0 0 3 3 3 0 YfzA-like protein SecY PF00344.15 gi|344212390|ref|YP_004796710.1| - 2.1e-94 316.3 18.7 2.6e-94 316.0 13.0 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|344212390|ref|YP_004796710.1| - 5e-08 32.3 0.7 1.3e-07 30.9 0.5 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|344212391|ref|YP_004796711.1| - 1.3e-27 96.7 0.7 1.3e-27 96.7 0.5 1.3 2 0 0 2 2 2 1 Ribosomal protein L18e/L15 Rpp20 PF12328.3 gi|344212391|ref|YP_004796711.1| - 0.72 9.4 4.0 1.2 8.7 2.7 1.5 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Ribosomal_L30 PF00327.15 gi|344212392|ref|YP_004796712.1| - 1.1e-13 50.4 0.0 1.9e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|344212393|ref|YP_004796713.1| - 3.2e-28 97.2 0.4 5.4e-28 96.5 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|344212393|ref|YP_004796713.1| - 1.4e-24 85.1 0.0 2.1e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|344212394|ref|YP_004796714.1| - 4.4e-36 123.6 0.0 5.5e-36 123.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family cwf21 PF08312.7 gi|344212394|ref|YP_004796714.1| - 0.024 14.4 0.0 0.071 12.9 0.0 1.7 1 0 0 1 1 1 0 cwf21 domain Ribosomal_L19e PF01280.15 gi|344212395|ref|YP_004796715.1| - 1.8e-56 190.0 5.9 2e-56 189.8 4.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF3658 PF12395.3 gi|344212395|ref|YP_004796715.1| - 0.034 13.6 0.4 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function SHOCT PF09851.4 gi|344212395|ref|YP_004796715.1| - 0.041 13.3 1.6 0.2 11.1 0.2 2.8 2 1 0 2 2 2 0 Short C-terminal domain SAND PF01342.16 gi|344212395|ref|YP_004796715.1| - 0.048 13.3 0.4 0.11 12.2 0.3 1.5 1 0 0 1 1 1 0 SAND domain Ribosomal_L32e PF01655.13 gi|344212396|ref|YP_004796716.1| - 1.4e-39 134.4 0.7 1.1e-38 131.6 0.8 1.9 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|344212396|ref|YP_004796716.1| - 1.3e-15 57.2 2.8 2.3e-12 46.9 0.3 2.8 3 0 0 3 3 3 2 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|344212396|ref|YP_004796716.1| - 6e-07 28.9 0.0 2.7e-06 26.8 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|344212396|ref|YP_004796716.1| - 8.9e-07 28.2 0.4 0.0051 16.4 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|344212396|ref|YP_004796716.1| - 5.7e-06 26.1 0.0 0.00012 21.8 0.0 2.7 2 2 1 3 3 3 1 Pathogenicity locus HHH_2 PF12826.2 gi|344212396|ref|YP_004796716.1| - 0.0001 22.1 0.1 0.00065 19.5 0.1 2.1 1 1 1 2 2 2 2 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|344212396|ref|YP_004796716.1| - 0.0071 16.2 0.1 0.72 9.8 0.0 2.5 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|344212396|ref|YP_004796716.1| - 0.011 15.9 0.2 1.6 8.9 0.0 2.5 1 1 1 2 2 2 0 Helix-hairpin-helix domain Ribosomal_L6 PF00347.18 gi|344212397|ref|YP_004796717.1| - 2.5e-28 98.4 0.1 1.5e-13 51.0 0.0 2.0 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.12 gi|344212397|ref|YP_004796717.1| - 0.11 12.2 3.4 19 5.0 0.0 3.7 4 0 0 4 4 4 0 BON domain HSP20 PF00011.16 gi|344212397|ref|YP_004796717.1| - 1.8 8.4 4.4 2.3 8.1 0.1 3.0 2 2 1 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_S8 PF00410.14 gi|344212398|ref|YP_004796718.1| - 1.2e-22 80.1 0.0 1.6e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|344212399|ref|YP_004796719.1| - 9.8e-15 53.6 1.5 1.1e-14 53.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|344212399|ref|YP_004796719.1| - 0.00053 19.6 0.1 0.00065 19.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L37ae PF01780.14 gi|344212399|ref|YP_004796719.1| - 0.082 12.7 0.6 0.093 12.6 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Ribosomal_L5_C PF00673.16 gi|344212400|ref|YP_004796720.1| - 1.1e-21 76.3 0.0 1.6e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|344212400|ref|YP_004796720.1| - 3.8e-21 74.6 0.0 6.7e-21 73.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|344212401|ref|YP_004796721.1| - 7.9e-24 83.1 0.0 1.5e-23 82.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|344212401|ref|YP_004796721.1| - 3.9e-05 23.0 0.2 0.00011 21.5 0.0 1.9 2 0 0 2 2 2 1 S4 domain Peptidase_S24 PF00717.18 gi|344212401|ref|YP_004796721.1| - 0.0053 16.3 0.0 0.013 15.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase S24-like KOW PF00467.24 gi|344212401|ref|YP_004796721.1| - 0.0064 16.1 1.8 0.0078 15.8 0.1 2.2 2 0 0 2 2 2 1 KOW motif Nha1_C PF08619.5 gi|344212401|ref|YP_004796721.1| - 0.17 11.1 0.3 0.19 10.9 0.2 1.2 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus KOW PF00467.24 gi|344212402|ref|YP_004796722.1| - 3.1e-09 36.1 1.1 5.5e-09 35.3 0.1 1.9 2 0 0 2 2 2 1 KOW motif Ribosomal_L14 PF00238.14 gi|344212403|ref|YP_004796723.1| - 2.8e-36 123.9 0.0 3.1e-36 123.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|344212404|ref|YP_004796724.1| - 4e-29 100.4 0.5 5e-29 100.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.11 gi|344212405|ref|YP_004796725.1| - 1.1e-28 98.6 0.0 1.2e-28 98.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|344212406|ref|YP_004796726.1| - 1.2e-20 72.9 0.2 1.4e-20 72.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein KH_2 PF07650.12 gi|344212407|ref|YP_004796727.1| - 1.2e-16 59.9 0.0 2.9e-16 58.7 0.0 1.7 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|344212407|ref|YP_004796727.1| - 2e-15 56.7 0.1 3.1e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|344212407|ref|YP_004796727.1| - 0.00032 20.2 0.1 0.00032 20.2 0.1 2.5 3 1 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|344212407|ref|YP_004796727.1| - 0.0086 15.7 3.2 0.016 14.8 0.9 2.4 2 0 0 2 2 2 1 KH domain KH_5 PF13184.1 gi|344212407|ref|YP_004796727.1| - 0.051 13.3 0.0 0.19 11.5 0.0 2.0 2 0 0 2 2 2 0 NusA-like KH domain KH_4 PF13083.1 gi|344212407|ref|YP_004796727.1| - 3.3 7.4 7.1 0.22 11.2 0.2 2.5 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|344212408|ref|YP_004796728.1| - 1.8e-26 92.1 0.0 2.1e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|344212409|ref|YP_004796729.1| - 6.8e-29 99.3 0.4 1.5e-28 98.2 0.0 1.7 2 1 1 3 3 3 1 Ribosomal protein S19 Ribosomal_L2_C PF03947.13 gi|344212410|ref|YP_004796730.1| - 1.7e-46 157.2 1.1 2.2e-46 156.8 0.8 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|344212410|ref|YP_004796730.1| - 8.4e-16 57.7 0.0 2e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|344212411|ref|YP_004796731.1| - 1.6e-20 72.8 0.5 3e-20 71.9 0.4 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 PqqD PF05402.7 gi|344212411|ref|YP_004796731.1| - 0.043 13.8 0.2 0.078 13.0 0.1 1.4 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) TusA PF01206.12 gi|344212411|ref|YP_004796731.1| - 0.079 12.5 0.1 0.11 12.1 0.1 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA DNase-RNase PF02577.9 gi|344212411|ref|YP_004796731.1| - 0.087 12.0 0.1 0.098 11.8 0.1 1.1 1 0 0 1 1 1 0 Bifunctional nuclease Ribosomal_L4 PF00573.17 gi|344212412|ref|YP_004796732.1| - 5.8e-40 136.7 0.1 6.7e-40 136.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|344212413|ref|YP_004796733.1| - 3.8e-92 308.3 0.0 4.4e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|344212414|ref|YP_004796734.1| - 8.1e-49 166.5 0.0 9.5e-49 166.3 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF1508 PF07411.7 gi|344212415|ref|YP_004796735.1| - 3.3e-44 148.1 2.5 3.4e-22 77.6 0.3 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) DUF1083 PF06452.6 gi|344212415|ref|YP_004796735.1| - 0.0069 16.2 2.1 0.0098 15.7 1.3 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1083) DUF2341 PF10102.4 gi|344212415|ref|YP_004796735.1| - 0.019 15.1 0.1 8.2 6.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2341) Tombus_P19 PF03220.8 gi|344212415|ref|YP_004796735.1| - 0.044 13.1 0.1 0.92 8.8 0.0 2.1 2 0 0 2 2 2 0 Tombusvirus P19 core protein DUF2794 PF10984.3 gi|344212415|ref|YP_004796735.1| - 0.12 12.2 0.0 6.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2794) SpoIIIAH PF12685.2 gi|344212415|ref|YP_004796735.1| - 0.13 11.7 2.6 0.72 9.3 1.8 1.9 1 1 0 1 1 1 0 SpoIIIAH-like protein DUF77 PF01910.12 gi|344212416|ref|YP_004796736.1| - 8.5e-25 86.2 0.2 1e-24 85.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 DUF1028 PF06267.7 gi|344212416|ref|YP_004796736.1| - 0.058 12.8 0.1 0.063 12.7 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF1028) AvrL567-A PF11529.3 gi|344212416|ref|YP_004796736.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Melampsora lini avirulence protein AvrL567-A MCH PF02289.11 gi|344212417|ref|YP_004796737.1| - 4.5e-85 285.4 0.4 5e-85 285.2 0.3 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) GTP_EFTU PF00009.22 gi|344212419|ref|YP_004796739.1| - 5.3e-33 114.0 0.1 7.5e-33 113.5 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|344212419|ref|YP_004796739.1| - 7e-15 55.0 0.0 1.5e-14 53.9 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|344212419|ref|YP_004796739.1| - 1.2e-11 44.5 0.6 4.2e-11 42.7 0.4 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 ATP_bind_1 PF03029.12 gi|344212419|ref|YP_004796739.1| - 0.00056 19.5 1.4 0.0018 17.8 0.1 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU_D4 PF14578.1 gi|344212419|ref|YP_004796739.1| - 0.0047 16.5 0.7 0.014 15.0 0.5 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Polysacc_deac_1 PF01522.16 gi|344212419|ref|YP_004796739.1| - 0.081 12.5 0.1 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide deacetylase MMR_HSR1 PF01926.18 gi|344212419|ref|YP_004796739.1| - 0.09 12.7 0.0 0.26 11.2 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Hydrolase_3 PF08282.7 gi|344212420|ref|YP_004796740.1| - 6.1e-26 91.5 0.0 2.5e-16 60.0 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|344212420|ref|YP_004796740.1| - 1.8e-08 34.0 0.0 2.6e-07 30.2 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|344212420|ref|YP_004796740.1| - 1.7e-06 28.6 1.4 0.0091 16.4 0.2 2.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344212420|ref|YP_004796740.1| - 1.7e-05 25.1 0.6 0.0023 18.1 0.0 2.6 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|344212420|ref|YP_004796740.1| - 0.0026 18.0 0.1 1.6 8.9 0.0 2.4 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|344212420|ref|YP_004796740.1| - 0.072 11.9 0.0 0.98 8.2 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase DnaJ PF00226.26 gi|344212421|ref|YP_004796741.1| - 9.6e-17 60.4 0.1 1.4e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|344212421|ref|YP_004796741.1| - 0.0028 17.0 0.0 0.0065 15.8 0.0 1.6 1 1 0 1 1 1 1 A repeated domain in UCH-protein UPF0542 PF15086.1 gi|344212421|ref|YP_004796741.1| - 0.78 9.5 2.7 49 3.7 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 Mating_C PF12737.2 gi|344212421|ref|YP_004796741.1| - 1.2 7.9 4.7 1.5 7.6 3.3 1.1 1 0 0 1 1 1 0 C-terminal domain of homeodomain 1 Ribonuc_red_lgC PF02867.10 gi|344212422|ref|YP_004796742.1| - 4.6e-156 520.5 0.0 5.6e-156 520.2 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|344212422|ref|YP_004796742.1| - 2.5e-30 104.2 0.0 3e-28 97.6 0.0 3.3 3 0 0 3 3 3 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|344212422|ref|YP_004796742.1| - 5.6e-26 90.1 0.0 2.1e-25 88.3 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain TraG-D_C PF12696.2 gi|344212422|ref|YP_004796742.1| - 0.046 13.5 0.3 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 TraM recognition site of TraD and TraG Y_phosphatase3C PF13348.1 gi|344212422|ref|YP_004796742.1| - 0.087 12.9 0.4 1.3 9.1 0.0 3.0 2 1 1 3 3 3 0 Tyrosine phosphatase family C-terminal region zf-ribbon_3 PF13248.1 gi|344212422|ref|YP_004796742.1| - 2.6 7.3 6.3 5.5 6.3 4.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Oxidored_molyb PF00174.14 gi|344212424|ref|YP_004796744.1| - 7.6e-42 142.5 0.0 1.2e-41 141.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|344212424|ref|YP_004796744.1| - 6.1e-17 61.4 0.0 2e-16 59.7 0.0 1.8 2 0 0 2 2 2 1 Mo-co oxidoreductase dimerisation domain BNR PF02012.15 gi|344212424|ref|YP_004796744.1| - 0.055 13.3 0.2 0.16 11.8 0.2 1.9 1 0 0 1 1 1 0 BNR/Asp-box repeat PAS_9 PF13426.1 gi|344212425|ref|YP_004796745.1| - 1e-55 186.4 3.2 2.6e-16 59.8 0.1 4.3 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|344212425|ref|YP_004796745.1| - 2.8e-42 143.2 5.4 4.9e-16 58.7 0.1 4.2 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|344212425|ref|YP_004796745.1| - 6.6e-39 132.2 1.2 4.4e-14 52.2 0.0 3.8 4 0 0 4 4 4 3 PAS fold PAS_3 PF08447.6 gi|344212425|ref|YP_004796745.1| - 5.4e-35 119.3 0.1 1.9e-11 43.8 0.1 4.4 4 0 0 4 4 4 4 PAS fold PAS_8 PF13188.1 gi|344212425|ref|YP_004796745.1| - 5.4e-22 76.8 0.4 5e-07 29.3 0.0 4.8 5 0 0 5 5 5 3 PAS domain Response_reg PF00072.19 gi|344212425|ref|YP_004796745.1| - 3.3e-20 72.1 0.0 1.2e-19 70.3 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344212425|ref|YP_004796745.1| - 7.9e-19 67.4 0.1 1.9e-18 66.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344212425|ref|YP_004796745.1| - 2.1e-12 46.8 0.3 2.1e-12 46.8 0.2 2.9 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|344212425|ref|YP_004796745.1| - 2.5e-05 24.4 0.1 0.044 14.0 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.1 gi|344212425|ref|YP_004796745.1| - 0.0098 15.8 0.0 4.3 7.3 0.0 3.8 4 0 0 4 4 4 1 PAS domain HATPase_c_3 PF13589.1 gi|344212425|ref|YP_004796745.1| - 0.016 14.8 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.10 gi|344212425|ref|YP_004796745.1| - 0.034 14.1 0.0 0.08 13.0 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain AKAP2_C PF15304.1 gi|344212425|ref|YP_004796745.1| - 0.21 11.1 8.7 3.2 7.2 0.0 3.2 3 0 0 3 3 3 0 A-kinase anchor protein 2 C-terminus SNARE_assoc PF09335.6 gi|344212426|ref|YP_004796746.1| - 7e-18 65.0 4.7 7e-18 65.0 3.3 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF4140 PF13600.1 gi|344212428|ref|YP_004796748.1| - 0.013 15.9 2.6 0.031 14.7 1.8 1.7 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) SlyX PF04102.7 gi|344212428|ref|YP_004796748.1| - 0.024 14.9 3.1 0.062 13.6 2.2 1.7 1 0 0 1 1 1 0 SlyX COG2 PF06148.6 gi|344212428|ref|YP_004796748.1| - 0.03 14.1 0.9 0.052 13.4 0.6 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_DNA_bd PF12329.3 gi|344212428|ref|YP_004796748.1| - 0.045 13.5 3.5 0.098 12.4 2.4 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HAUS-augmin3 PF14932.1 gi|344212428|ref|YP_004796748.1| - 0.1 11.7 2.5 0.17 11.0 1.7 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 TPX2 PF06886.6 gi|344212428|ref|YP_004796748.1| - 0.54 10.3 3.6 1.1 9.3 2.5 1.4 1 0 0 1 1 1 0 Targeting protein for Xklp2 (TPX2) DivIC PF04977.10 gi|344212428|ref|YP_004796748.1| - 4.3 6.8 6.7 11 5.6 4.7 1.7 1 1 0 1 1 1 0 Septum formation initiator HalX PF08663.5 gi|344212429|ref|YP_004796749.1| - 3.4e-25 87.8 8.0 6.1e-25 87.0 5.6 1.4 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|344212429|ref|YP_004796749.1| - 7.2e-17 61.4 1.0 1.5e-16 60.3 0.7 1.5 1 0 0 1 1 1 1 Response regulator receiver domain Radical_SAM PF04055.16 gi|344212429|ref|YP_004796749.1| - 0.15 12.2 0.2 0.52 10.4 0.0 1.7 1 1 0 2 2 2 0 Radical SAM superfamily SPACA7 PF15307.1 gi|344212429|ref|YP_004796749.1| - 0.15 12.1 1.9 0.25 11.4 1.3 1.4 1 0 0 1 1 1 0 Sperm acrosome-associated protein 7 Pyridox_oxidase PF01243.15 gi|344212430|ref|YP_004796750.1| - 0.0023 17.9 0.0 0.0031 17.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|344212430|ref|YP_004796750.1| - 0.074 12.8 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF899 PF05988.7 gi|344212431|ref|YP_004796751.1| - 0.1 11.9 0.1 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) adh_short PF00106.20 gi|344212433|ref|YP_004796753.1| - 7.3e-22 78.0 1.9 1e-21 77.5 1.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344212433|ref|YP_004796753.1| - 9.6e-12 45.1 0.0 1.1e-11 44.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344212433|ref|YP_004796753.1| - 9.3e-06 25.4 0.8 1.6e-05 24.6 0.5 1.4 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|344212433|ref|YP_004796753.1| - 0.029 14.3 0.3 0.043 13.8 0.2 1.5 1 1 0 1 1 1 0 NADH(P)-binding Saccharop_dh_N PF04455.7 gi|344212435|ref|YP_004796755.1| - 0.15 12.1 0.0 0.18 11.9 0.0 1.2 1 1 0 1 1 1 0 LOR/SDH bifunctional enzyme conserved region Peptidase_M50 PF02163.17 gi|344212437|ref|YP_004796757.1| - 1.4e-12 47.0 6.3 1.4e-12 47.0 4.4 2.7 2 1 0 2 2 2 1 Peptidase family M50 ScpA_ScpB PF02616.9 gi|344212438|ref|YP_004796758.1| - 4.5e-24 85.3 0.0 3.8e-23 82.3 0.0 2.0 1 1 0 1 1 1 1 ScpA/B protein XkdW PF09636.5 gi|344212438|ref|YP_004796758.1| - 0.15 11.9 0.5 22 5.0 0.1 2.8 2 1 1 3 3 3 0 XkdW protein SMC_N PF02463.14 gi|344212439|ref|YP_004796759.1| - 1.7e-42 145.1 73.2 4.2e-41 140.5 50.7 3.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|344212439|ref|YP_004796759.1| - 8.6e-29 99.9 0.0 4.3e-28 97.6 0.0 2.3 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|344212439|ref|YP_004796759.1| - 4.3e-20 72.9 8.3 4.3e-20 72.9 5.7 8.0 2 2 1 3 3 1 1 AAA domain Reo_sigmaC PF04582.7 gi|344212439|ref|YP_004796759.1| - 1.7e-13 50.5 32.1 0.00037 19.7 2.0 6.4 2 2 5 7 7 7 7 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|344212439|ref|YP_004796759.1| - 4.1e-13 48.7 108.9 2.3e-05 23.1 16.5 6.0 3 2 3 6 6 6 5 AAA domain AAA_21 PF13304.1 gi|344212439|ref|YP_004796759.1| - 4.9e-12 46.4 13.2 1.6e-06 28.2 0.2 4.0 3 2 0 3 3 3 2 AAA domain IncA PF04156.9 gi|344212439|ref|YP_004796759.1| - 6.3e-09 35.7 161.7 0.0035 16.9 8.0 8.3 2 2 7 9 9 9 6 IncA protein Cast PF10174.4 gi|344212439|ref|YP_004796759.1| - 1.3e-08 33.4 149.4 1.9e-05 22.9 46.3 3.2 2 1 1 3 3 3 3 RIM-binding protein of the cytomatrix active zone AAA_29 PF13555.1 gi|344212439|ref|YP_004796759.1| - 9.4e-07 28.2 0.0 2.5e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain Fib_alpha PF08702.5 gi|344212439|ref|YP_004796759.1| - 3.5e-05 23.9 7.7 3.5e-05 23.9 5.4 7.0 4 2 4 8 8 8 4 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|344212439|ref|YP_004796759.1| - 5.7e-05 22.8 2.4 5.7e-05 22.8 1.7 8.8 4 3 5 9 9 9 2 Bacterial protein of unknown function (DUF948) EzrA PF06160.7 gi|344212439|ref|YP_004796759.1| - 0.00021 19.6 18.2 0.00021 19.6 12.6 5.4 2 2 1 3 3 3 2 Septation ring formation regulator, EzrA TMF_DNA_bd PF12329.3 gi|344212439|ref|YP_004796759.1| - 0.00026 20.7 12.9 0.00026 20.7 8.9 11.9 3 3 9 14 14 13 3 TATA element modulatory factor 1 DNA binding ATG16 PF08614.6 gi|344212439|ref|YP_004796759.1| - 0.00056 19.7 139.0 0.057 13.2 12.1 9.6 2 2 8 10 10 10 4 Autophagy protein 16 (ATG16) CENP-F_leu_zip PF10473.4 gi|344212439|ref|YP_004796759.1| - 0.00099 18.9 158.8 0.013 15.3 12.9 9.1 3 2 5 8 8 7 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|344212439|ref|YP_004796759.1| - 0.0011 16.8 167.0 0.011 13.5 58.4 3.7 2 2 1 3 3 3 2 Myosin tail Spc7 PF08317.6 gi|344212439|ref|YP_004796759.1| - 0.012 14.3 130.8 0.033 12.8 11.1 7.8 2 2 5 7 7 7 0 Spc7 kinetochore protein MscS_porin PF12795.2 gi|344212439|ref|YP_004796759.1| - 0.031 13.6 114.6 0.051 12.8 2.9 6.5 2 2 3 6 6 6 0 Mechanosensitive ion channel porin domain Mnd1 PF03962.10 gi|344212439|ref|YP_004796759.1| - 0.055 13.1 127.1 0.08 12.5 2.5 8.7 2 2 6 8 8 8 0 Mnd1 family APG6 PF04111.7 gi|344212439|ref|YP_004796759.1| - 0.058 12.4 151.7 0.0089 15.1 17.1 8.0 2 2 6 8 8 8 0 Autophagy protein Apg6 AAA_27 PF13514.1 gi|344212439|ref|YP_004796759.1| - 0.13 9.8 133.1 0.074 10.7 17.3 3.7 2 2 1 3 3 3 0 AAA domain Baculo_PEP_C PF04513.7 gi|344212439|ref|YP_004796759.1| - 0.18 11.6 42.9 0.86 9.4 1.1 8.1 3 2 5 9 9 9 0 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.1 gi|344212439|ref|YP_004796759.1| - 0.24 10.5 125.0 0.11 11.7 8.0 7.1 2 2 4 7 7 7 0 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|344212439|ref|YP_004796759.1| - 0.77 9.7 161.0 0.066 13.1 9.7 10.4 3 3 6 9 9 9 0 Domain of unknown function (DUF4200) DUF869 PF05911.6 gi|344212439|ref|YP_004796759.1| - 2 6.5 115.7 1.5 6.9 33.4 5.1 2 2 2 4 4 4 0 Plant protein of unknown function (DUF869) Filament PF00038.16 gi|344212439|ref|YP_004796759.1| - 2.7 7.3 131.8 0.28 10.6 6.1 7.9 2 2 4 6 6 6 0 Intermediate filament protein AAA_15 PF13175.1 gi|344212439|ref|YP_004796759.1| - 3.2 6.7 36.0 0.9 8.5 15.4 3.8 2 2 1 3 3 2 0 AAA ATPase domain Laminin_II PF06009.7 gi|344212439|ref|YP_004796759.1| - 3.7 7.3 82.0 0.25 11.0 2.6 9.2 3 2 4 10 10 9 0 Laminin Domain II Spc7 PF08317.6 gi|344212440|ref|YP_004796760.1| - 0.001 17.8 0.1 0.0013 17.4 0.1 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein SlyX PF04102.7 gi|344212440|ref|YP_004796760.1| - 0.0016 18.7 0.0 0.0016 18.7 0.0 1.7 2 0 0 2 2 2 1 SlyX Striatin PF08232.7 gi|344212440|ref|YP_004796760.1| - 0.0058 16.9 2.5 0.0073 16.6 1.7 1.1 1 0 0 1 1 1 1 Striatin family HSBP1 PF06825.7 gi|344212440|ref|YP_004796760.1| - 0.024 14.1 0.8 0.53 9.8 0.0 2.2 1 1 1 2 2 2 0 Heat shock factor binding protein 1 FlaC_arch PF05377.6 gi|344212440|ref|YP_004796760.1| - 0.031 14.1 1.2 0.051 13.4 0.8 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) bZIP_1 PF00170.16 gi|344212440|ref|YP_004796760.1| - 0.043 13.7 0.2 0.071 13.0 0.1 1.4 1 0 0 1 1 1 0 bZIP transcription factor BCAS2 PF05700.6 gi|344212440|ref|YP_004796760.1| - 0.051 13.0 0.2 0.051 13.0 0.1 1.6 1 1 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) GOLGA2L5 PF15070.1 gi|344212440|ref|YP_004796760.1| - 0.068 11.6 2.9 0.076 11.4 2.0 1.1 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 DUF2730 PF10805.3 gi|344212440|ref|YP_004796760.1| - 0.075 12.7 0.2 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) BBP1_C PF15272.1 gi|344212440|ref|YP_004796760.1| - 0.076 12.5 1.5 0.12 11.9 1.0 1.3 1 1 0 1 1 1 0 Spindle pole body component BBP1, C-terminal DUF2360 PF10152.4 gi|344212440|ref|YP_004796760.1| - 0.13 12.5 3.0 0.16 12.2 2.1 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) Autophagy_N PF03986.8 gi|344212440|ref|YP_004796760.1| - 0.35 10.6 6.1 0.39 10.4 4.2 1.2 1 0 0 1 1 1 0 Autophagocytosis associated protein (Atg3), N-terminal domain L_lactis_ph-MCP PF06673.6 gi|344212440|ref|YP_004796760.1| - 1.1 7.9 6.0 0.87 8.2 1.2 2.1 1 1 1 2 2 2 0 Lactococcus lactis bacteriophage major capsid protein Vfa1 PF08432.5 gi|344212440|ref|YP_004796760.1| - 1.4 8.9 5.4 1.7 8.6 3.8 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 YqfQ PF14181.1 gi|344212440|ref|YP_004796760.1| - 4.7 7.2 5.8 6.3 6.8 4.0 1.1 1 0 0 1 1 1 0 YqfQ-like protein Spc24 PF08286.6 gi|344212440|ref|YP_004796760.1| - 6.3 6.5 8.1 42 3.8 5.6 1.9 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Med4 PF10018.4 gi|344212440|ref|YP_004796760.1| - 7.2 5.9 12.0 0.38 10.1 0.4 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Nop14 PF04147.7 gi|344212440|ref|YP_004796760.1| - 8.9 4.0 14.6 9.7 3.9 10.1 1.0 1 0 0 1 1 1 0 Nop14-like family GatB_N PF02934.10 gi|344212441|ref|YP_004796761.1| - 7.3e-109 363.0 0.1 1.3e-108 362.2 0.0 1.4 2 0 0 2 2 2 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|344212441|ref|YP_004796761.1| - 5.9e-39 133.1 0.0 9.1e-39 132.5 0.0 1.3 1 0 0 1 1 1 1 GatB domain TMEM238 PF15125.1 gi|344212443|ref|YP_004796763.1| - 0.16 11.8 2.0 0.3 11.0 0.5 2.1 2 0 0 2 2 2 0 TMEM238 protein family PrgI PF12666.2 gi|344212443|ref|YP_004796763.1| - 0.63 10.2 5.0 0.24 11.5 1.2 1.9 2 0 0 2 2 2 0 PrgI family protein Topoisom_bac PF01131.15 gi|344212444|ref|YP_004796764.1| - 3.6e-116 388.3 0.0 4.6e-116 387.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|344212444|ref|YP_004796764.1| - 3.9e-19 67.8 3.2 5.5e-14 51.3 1.3 4.1 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|344212444|ref|YP_004796764.1| - 2.4e-17 62.7 0.0 4.6e-17 61.8 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|344212444|ref|YP_004796764.1| - 4.9e-09 36.2 8.3 9.9e-08 32.0 0.6 3.8 4 0 0 4 4 3 2 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|344212444|ref|YP_004796764.1| - 0.00061 19.6 0.0 0.0018 18.1 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.18 gi|344212444|ref|YP_004796764.1| - 0.0069 16.0 0.0 0.025 14.2 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|344212444|ref|YP_004796764.1| - 0.085 12.4 0.1 0.47 10.0 0.0 2.4 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda zinc_ribbon_2 PF13240.1 gi|344212444|ref|YP_004796764.1| - 0.13 11.8 1.9 15 5.2 0.0 3.1 2 1 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.6 gi|344212444|ref|YP_004796764.1| - 0.99 9.1 6.6 5.3 6.8 1.2 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1451) zf-TFIIB PF13453.1 gi|344212444|ref|YP_004796764.1| - 2.2 7.5 9.2 3.3 6.9 0.7 3.6 3 0 0 3 3 3 0 Transcription factor zinc-finger Lar_restr_allev PF14354.1 gi|344212444|ref|YP_004796764.1| - 3.3 8.0 17.3 2.5e+02 2.0 8.0 4.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Rad50_zn_hook PF04423.9 gi|344212445|ref|YP_004796765.1| - 0.019 14.4 1.8 0.55 9.7 0.1 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-H2C2_2 PF13465.1 gi|344212445|ref|YP_004796765.1| - 0.035 14.4 0.1 8.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-RING_3 PF14369.1 gi|344212445|ref|YP_004796765.1| - 0.036 14.0 1.3 0.48 10.4 0.2 2.1 2 0 0 2 2 2 0 zinc-finger Sgf11 PF08209.6 gi|344212445|ref|YP_004796765.1| - 0.04 13.2 2.7 0.27 10.5 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.5 gi|344212445|ref|YP_004796765.1| - 0.058 13.3 0.5 2.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|344212445|ref|YP_004796765.1| - 0.097 12.3 0.6 5.1 6.8 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-Nse PF11789.3 gi|344212445|ref|YP_004796765.1| - 0.16 11.4 3.2 4.9 6.7 2.2 2.1 1 1 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit zf-Di19 PF05605.7 gi|344212445|ref|YP_004796765.1| - 0.22 11.6 3.6 5.2 7.2 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF1178 PF06676.6 gi|344212445|ref|YP_004796765.1| - 0.23 11.6 1.7 5.7 7.1 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) Zn_Tnp_IS1 PF03811.8 gi|344212445|ref|YP_004796765.1| - 0.34 10.4 2.2 14 5.3 0.2 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Prim_Zn_Ribbon PF08273.7 gi|344212445|ref|YP_004796765.1| - 0.76 9.9 3.1 3.8 7.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.1 gi|344212445|ref|YP_004796765.1| - 0.88 9.9 4.0 11 6.3 0.3 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2HC_2 PF13913.1 gi|344212445|ref|YP_004796765.1| - 1.4 8.6 3.7 4.1 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Rieske PF00355.21 gi|344212446|ref|YP_004796766.1| - 3.1e-08 33.0 0.1 4.2e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Tic20 PF09685.5 gi|344212447|ref|YP_004796767.1| - 4.4 7.3 11.7 5.5 7.0 0.7 2.3 2 0 0 2 2 2 0 Tic20-like protein Bacteriocin_IIc PF10439.4 gi|344212447|ref|YP_004796767.1| - 5.4 7.2 6.5 1.6 8.9 0.1 2.4 2 1 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide DUF4191 PF13829.1 gi|344212447|ref|YP_004796767.1| - 9.7 5.2 7.9 2.5 7.1 2.9 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) PcrB PF01884.12 gi|344212448|ref|YP_004796768.1| - 4.7e-51 173.2 1.4 5.5e-51 173.0 1.0 1.0 1 0 0 1 1 1 1 PcrB family Trp_syntA PF00290.15 gi|344212448|ref|YP_004796768.1| - 0.12 10.9 0.2 0.36 9.3 0.0 1.8 2 0 0 2 2 2 0 Tryptophan synthase alpha chain AA_permease_2 PF13520.1 gi|344212449|ref|YP_004796769.1| - 2.6e-47 161.3 39.9 3.4e-47 160.9 27.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|344212449|ref|YP_004796769.1| - 4.9e-45 153.7 41.3 6.3e-45 153.4 28.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|344212449|ref|YP_004796769.1| - 4.9e-05 23.5 1.8 6.2e-05 23.2 0.3 1.9 2 0 0 2 2 2 1 Universal stress protein family AA_permease_C PF13906.1 gi|344212449|ref|YP_004796769.1| - 0.0073 16.1 4.6 0.0073 16.1 3.2 2.6 2 0 0 2 2 2 1 C-terminus of AA_permease TrkA_N PF02254.13 gi|344212450|ref|YP_004796770.1| - 1.4e-10 41.2 0.1 1.7e-10 40.9 0.1 1.1 1 0 0 1 1 1 1 TrkA-N domain HTH_24 PF13412.1 gi|344212451|ref|YP_004796771.1| - 9.7e-14 50.4 0.2 1.4e-13 50.0 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344212451|ref|YP_004796771.1| - 1.3e-11 43.7 1.4 2.4e-11 42.9 0.9 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|344212451|ref|YP_004796771.1| - 7.6e-11 41.5 0.0 1.5e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|344212451|ref|YP_004796771.1| - 3.3e-07 29.9 0.0 6.4e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|344212451|ref|YP_004796771.1| - 4.8e-06 25.9 0.1 1.4e-05 24.5 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|344212451|ref|YP_004796771.1| - 3.1e-05 23.8 0.0 5.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|344212451|ref|YP_004796771.1| - 8.1e-05 22.2 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|344212451|ref|YP_004796771.1| - 0.00016 21.2 0.1 0.00032 20.2 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|344212451|ref|YP_004796771.1| - 0.00027 20.9 0.1 0.00066 19.7 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|344212451|ref|YP_004796771.1| - 0.00032 20.6 0.1 0.00069 19.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344212451|ref|YP_004796771.1| - 0.001 18.7 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_30 PF13556.1 gi|344212451|ref|YP_004796771.1| - 0.0013 18.3 0.1 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|344212451|ref|YP_004796771.1| - 0.0017 17.7 0.2 0.0031 16.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Mga PF08280.6 gi|344212451|ref|YP_004796771.1| - 0.0026 17.4 0.0 0.0039 16.8 0.0 1.2 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|344212451|ref|YP_004796771.1| - 0.0035 17.0 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family GerE PF00196.14 gi|344212451|ref|YP_004796771.1| - 0.006 15.8 0.1 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TrmB PF01978.14 gi|344212451|ref|YP_004796771.1| - 0.0062 16.2 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|344212451|ref|YP_004796771.1| - 0.0073 16.2 0.1 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_36 PF13730.1 gi|344212451|ref|YP_004796771.1| - 0.0088 16.1 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|344212451|ref|YP_004796771.1| - 0.0099 15.0 0.1 0.018 14.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|344212451|ref|YP_004796771.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|344212451|ref|YP_004796771.1| - 0.011 14.9 0.0 0.022 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|344212451|ref|YP_004796771.1| - 0.013 15.0 0.2 0.028 13.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|344212451|ref|YP_004796771.1| - 0.021 14.5 0.2 0.057 13.1 0.1 1.8 2 0 0 2 2 1 0 Ribonuclease R winged-helix domain GntR PF00392.16 gi|344212451|ref|YP_004796771.1| - 0.027 13.9 0.2 0.059 12.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|344212451|ref|YP_004796771.1| - 0.028 14.0 0.2 0.047 13.2 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_29 PF13551.1 gi|344212451|ref|YP_004796771.1| - 0.031 14.4 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix EAP30 PF04157.11 gi|344212451|ref|YP_004796771.1| - 0.035 13.2 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HrcA_DNA-bdg PF03444.10 gi|344212451|ref|YP_004796771.1| - 0.049 13.0 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_1 PF00126.22 gi|344212451|ref|YP_004796771.1| - 0.049 13.3 0.2 0.086 12.5 0.2 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_Tc3_2 PF01498.13 gi|344212451|ref|YP_004796771.1| - 0.05 13.6 0.2 0.078 13.0 0.2 1.3 1 0 0 1 1 1 0 Transposase DUF2513 PF10711.4 gi|344212451|ref|YP_004796771.1| - 0.057 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) RPA_C PF08784.6 gi|344212451|ref|YP_004796771.1| - 0.059 13.7 0.1 0.16 12.3 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal HTH_CodY PF08222.6 gi|344212451|ref|YP_004796771.1| - 0.067 12.5 0.6 0.14 11.5 0.2 1.6 2 0 0 2 2 1 0 CodY helix-turn-helix domain SgrR_N PF12793.2 gi|344212451|ref|YP_004796771.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term PaaX PF07848.7 gi|344212451|ref|YP_004796771.1| - 0.087 12.8 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein Sigma70_r3 PF04539.11 gi|344212451|ref|YP_004796771.1| - 0.099 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 DUF4423 PF14394.1 gi|344212451|ref|YP_004796771.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Put_DNA-bind_N PF06971.8 gi|344212451|ref|YP_004796771.1| - 0.15 11.8 0.2 0.32 10.7 0.2 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus ABC_tran PF00005.22 gi|344212453|ref|YP_004796773.1| - 4e-26 91.9 0.0 5.4e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212453|ref|YP_004796773.1| - 1.4e-12 48.2 0.0 1.5e-08 34.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|344212453|ref|YP_004796773.1| - 0.0044 16.2 0.0 0.0064 15.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|344212453|ref|YP_004796773.1| - 0.0081 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344212453|ref|YP_004796773.1| - 0.022 14.7 0.2 0.59 10.0 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|344212453|ref|YP_004796773.1| - 0.044 13.6 0.0 0.16 11.9 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|344212453|ref|YP_004796773.1| - 0.072 12.5 0.0 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|344212453|ref|YP_004796773.1| - 0.1 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_23 PF13476.1 gi|344212453|ref|YP_004796773.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.2 gi|344212454|ref|YP_004796774.1| - 1.4e-21 76.5 13.5 1.8e-21 76.2 9.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|344212454|ref|YP_004796774.1| - 2.8e-09 36.4 22.7 7.1e-09 35.1 15.7 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|344212454|ref|YP_004796774.1| - 1.1e-07 31.2 15.3 1.3e-07 31.0 10.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|344212454|ref|YP_004796774.1| - 0.00029 20.0 14.5 0.0005 19.3 10.1 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|344212454|ref|YP_004796774.1| - 0.0006 19.1 6.5 0.00092 18.5 4.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein tRNA-synt_2 PF00152.15 gi|344212455|ref|YP_004796775.1| - 1e-87 294.0 0.1 1.3e-87 293.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|344212455|ref|YP_004796775.1| - 3.6e-15 55.5 0.3 6e-15 54.8 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|344212455|ref|YP_004796775.1| - 0.0045 16.2 0.2 0.052 12.7 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) BOF PF04076.8 gi|344212455|ref|YP_004796775.1| - 0.088 12.6 0.3 0.32 10.8 0.2 1.9 1 1 0 1 1 1 0 Bacterial OB fold (BOF) protein Bac_rhodopsin PF01036.13 gi|344212457|ref|YP_004796777.1| - 1.6e-55 187.8 21.2 2e-55 187.5 14.7 1.1 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Aldo_ket_red PF00248.16 gi|344212458|ref|YP_004796778.1| - 1.9e-51 174.5 0.0 2.3e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_20 PF12840.2 gi|344212459|ref|YP_004796779.1| - 0.054 13.2 0.0 0.29 10.9 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain PAS_3 PF08447.6 gi|344212460|ref|YP_004796780.1| - 2.2e-36 123.8 0.1 1.1e-25 89.4 0.3 3.1 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|344212460|ref|YP_004796780.1| - 5.9e-28 97.2 0.1 6.8e-19 68.1 0.0 3.4 4 0 0 4 4 4 2 PAS domain PAS_4 PF08448.5 gi|344212460|ref|YP_004796780.1| - 7.4e-23 80.6 5.6 5.3e-14 52.1 0.0 4.5 4 1 0 4 4 4 3 PAS fold HTH_10 PF04967.7 gi|344212460|ref|YP_004796780.1| - 4.7e-19 67.7 0.0 1.1e-18 66.5 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.19 gi|344212460|ref|YP_004796780.1| - 1.5e-16 60.1 0.0 2.1e-13 50.0 0.0 2.9 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|344212460|ref|YP_004796780.1| - 1.7e-10 41.5 0.1 5.1e-10 40.0 0.0 1.9 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.1 gi|344212460|ref|YP_004796780.1| - 6.7e-05 22.8 0.0 0.00024 21.0 0.0 1.9 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|344212460|ref|YP_004796780.1| - 0.0011 19.0 0.1 0.0042 17.2 0.1 2.0 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|344212460|ref|YP_004796780.1| - 0.0012 18.6 0.0 0.0065 16.2 0.0 2.3 1 0 0 1 1 1 1 PAS domain PAS_10 PF13596.1 gi|344212460|ref|YP_004796780.1| - 0.0018 18.4 0.0 0.28 11.4 0.0 3.2 3 0 0 3 3 3 1 PAS domain GAF_3 PF13492.1 gi|344212460|ref|YP_004796780.1| - 0.002 18.2 0.2 0.0062 16.6 0.0 1.9 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.11 gi|344212460|ref|YP_004796780.1| - 0.034 13.4 0.7 0.073 12.3 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2411 PF10304.4 gi|344212460|ref|YP_004796780.1| - 0.069 12.7 2.9 11 5.7 0.1 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF2411) DUF2238 PF09997.4 gi|344212461|ref|YP_004796781.1| - 0.00027 20.3 3.2 0.0062 15.9 2.2 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF1279 PF06916.8 gi|344212461|ref|YP_004796781.1| - 0.077 13.3 0.1 0.13 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1279) DUF3392 PF11872.3 gi|344212461|ref|YP_004796781.1| - 0.57 10.1 6.6 4.1 7.4 0.2 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF3392) DUF4079 PF13301.1 gi|344212461|ref|YP_004796781.1| - 1.1 9.2 6.7 2.9 7.8 4.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) DUF457 PF04307.9 gi|344212463|ref|YP_004796783.1| - 5.5e-08 32.2 10.5 9.7e-08 31.4 7.0 1.7 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Pcc1 PF09341.5 gi|344212464|ref|YP_004796784.1| - 3.1e-17 62.3 0.1 3.7e-17 62.1 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|344212465|ref|YP_004796785.1| - 3.4e-10 39.2 5.9 4e-10 38.9 4.1 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|344212465|ref|YP_004796785.1| - 0.00061 19.4 0.3 0.00061 19.4 0.2 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF329 PF03884.9 gi|344212465|ref|YP_004796785.1| - 0.00094 18.6 0.7 0.41 10.2 0.0 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF329) TF_Zn_Ribbon PF08271.7 gi|344212465|ref|YP_004796785.1| - 0.0014 17.8 1.0 0.0019 17.4 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|344212465|ref|YP_004796785.1| - 0.0018 17.4 2.1 0.023 13.8 0.1 2.0 1 1 1 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344212465|ref|YP_004796785.1| - 0.0046 16.7 4.7 0.13 12.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|344212465|ref|YP_004796785.1| - 0.0051 16.2 1.5 0.46 10.0 0.0 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|344212465|ref|YP_004796785.1| - 0.012 15.3 0.8 0.042 13.6 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-CHCC PF10276.4 gi|344212465|ref|YP_004796785.1| - 0.012 15.3 0.2 0.02 14.7 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger domain DZR PF12773.2 gi|344212465|ref|YP_004796785.1| - 0.016 15.0 0.8 0.043 13.6 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|344212465|ref|YP_004796785.1| - 0.019 14.4 1.4 1.5 8.4 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Sgf11 PF08209.6 gi|344212465|ref|YP_004796785.1| - 0.022 14.0 2.6 0.61 9.4 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-AN1 PF01428.11 gi|344212465|ref|YP_004796785.1| - 0.026 14.4 0.6 0.048 13.5 0.4 1.5 1 1 1 2 2 2 0 AN1-like Zinc finger Prok-RING_1 PF14446.1 gi|344212465|ref|YP_004796785.1| - 0.029 14.0 1.6 0.086 12.5 1.2 1.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.6 gi|344212465|ref|YP_004796785.1| - 0.029 14.0 0.9 0.038 13.6 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-Di19 PF05605.7 gi|344212465|ref|YP_004796785.1| - 0.031 14.4 0.5 0.79 9.9 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_2 PF13240.1 gi|344212465|ref|YP_004796785.1| - 0.036 13.5 4.5 0.38 10.2 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|344212465|ref|YP_004796785.1| - 0.041 13.8 1.4 1.5 8.8 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.11 gi|344212465|ref|YP_004796785.1| - 0.049 13.2 3.8 0.79 9.4 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-ISL3 PF14690.1 gi|344212465|ref|YP_004796785.1| - 0.05 13.6 1.4 0.28 11.2 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|344212465|ref|YP_004796785.1| - 0.051 13.3 0.2 0.065 13.0 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-C2H2_4 PF13894.1 gi|344212465|ref|YP_004796785.1| - 0.062 13.6 0.8 2.3 8.7 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNHCP PF12647.2 gi|344212465|ref|YP_004796785.1| - 0.069 12.9 0.2 0.089 12.6 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain zf-RING_3 PF14369.1 gi|344212465|ref|YP_004796785.1| - 0.08 12.9 2.0 0.13 12.2 1.4 1.4 1 0 0 1 1 1 0 zinc-finger Zn_ribbon_recom PF13408.1 gi|344212465|ref|YP_004796785.1| - 0.088 13.0 1.4 1.4 9.2 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain TFIIS_C PF01096.13 gi|344212465|ref|YP_004796785.1| - 0.089 12.4 1.8 4.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Spt4 PF06093.8 gi|344212465|ref|YP_004796785.1| - 0.1 12.4 0.1 0.12 12.3 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger C1_1 PF00130.17 gi|344212465|ref|YP_004796785.1| - 0.12 12.1 0.5 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-TFIIB PF13453.1 gi|344212465|ref|YP_004796785.1| - 0.17 11.0 1.6 0.3 10.3 1.2 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|344212465|ref|YP_004796785.1| - 0.21 11.2 6.0 10 5.8 4.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|344212465|ref|YP_004796785.1| - 0.28 11.5 1.3 0.81 10.0 0.9 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Thioredoxin_4 PF13462.1 gi|344212465|ref|YP_004796785.1| - 0.31 11.0 1.8 0.52 10.2 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin zinc_ribbon_5 PF13719.1 gi|344212465|ref|YP_004796785.1| - 0.32 10.6 6.4 17 5.0 4.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|344212465|ref|YP_004796785.1| - 0.61 10.5 3.1 9.4 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|344212465|ref|YP_004796785.1| - 0.7 9.8 5.2 5.7 6.9 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|344212465|ref|YP_004796785.1| - 0.87 9.1 0.1 0.87 9.1 0.1 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|344212465|ref|YP_004796785.1| - 1.9 7.6 6.8 6.4 5.9 1.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com UPF0547 PF10571.4 gi|344212465|ref|YP_004796785.1| - 5.7 6.7 7.4 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|344212465|ref|YP_004796785.1| - 6.1 6.6 7.3 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L37ae PF01780.14 gi|344212466|ref|YP_004796786.1| - 1.9e-24 85.3 0.1 1.9e-24 85.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|344212466|ref|YP_004796786.1| - 0.00074 19.2 1.3 0.0011 18.7 0.9 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|344212466|ref|YP_004796786.1| - 0.0023 17.7 3.3 0.49 10.3 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin zf-H2C2_2 PF13465.1 gi|344212466|ref|YP_004796786.1| - 0.0027 17.8 1.1 0.2 12.0 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Rep_fac-A_C PF08646.5 gi|344212466|ref|YP_004796786.1| - 0.0049 16.5 0.5 0.0059 16.3 0.3 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain OrfB_Zn_ribbon PF07282.6 gi|344212466|ref|YP_004796786.1| - 0.0084 15.7 0.8 0.012 15.2 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|344212466|ref|YP_004796786.1| - 0.024 14.1 2.9 0.092 12.2 2.0 1.9 1 1 1 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|344212466|ref|YP_004796786.1| - 0.066 13.3 0.4 0.066 13.3 0.3 2.0 2 0 0 2 2 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|344212466|ref|YP_004796786.1| - 0.075 12.9 5.3 0.11 12.4 0.1 2.5 3 0 0 3 3 3 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|344212466|ref|YP_004796786.1| - 0.18 11.8 0.3 0.18 11.8 0.2 2.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.2 gi|344212466|ref|YP_004796786.1| - 0.19 11.5 2.4 1.9 8.3 2.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344212466|ref|YP_004796786.1| - 0.21 10.8 5.2 1.5 8.1 3.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|344212466|ref|YP_004796786.1| - 0.21 11.6 0.6 0.21 11.6 0.4 2.4 2 1 1 3 3 3 0 zinc-finger Prim_Zn_Ribbon PF08273.7 gi|344212466|ref|YP_004796786.1| - 0.23 11.5 9.0 0.76 9.9 6.2 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-CHCC PF10276.4 gi|344212466|ref|YP_004796786.1| - 0.24 11.2 3.1 0.7 9.7 0.4 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2 PF00096.21 gi|344212466|ref|YP_004796786.1| - 0.36 11.2 4.2 3.4 8.2 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|344212466|ref|YP_004796786.1| - 0.46 10.9 3.0 3.5 8.1 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|344212466|ref|YP_004796786.1| - 0.81 9.3 3.8 36 4.0 2.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344212466|ref|YP_004796786.1| - 1.4 8.6 3.9 59 3.4 2.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|344212466|ref|YP_004796786.1| - 2.7 7.7 5.2 15 5.3 3.5 2.0 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|344212466|ref|YP_004796786.1| - 3.8 7.2 5.4 9.8 5.9 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DoxX_2 PF13564.1 gi|344212467|ref|YP_004796787.1| - 0.17 11.8 11.6 0.28 11.1 8.1 1.5 1 1 0 1 1 1 0 DoxX-like family NdhL PF10716.4 gi|344212467|ref|YP_004796787.1| - 1.8 8.3 4.6 2.7 7.8 3.2 1.4 1 1 0 1 1 1 0 NADH dehydrogenase transmembrane subunit DUF2103 PF09876.4 gi|344212469|ref|YP_004796789.1| - 2.6e-44 149.1 0.3 5e-44 148.2 0.2 1.5 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) GHMP_kinases_N PF00288.21 gi|344212470|ref|YP_004796790.1| - 3.6e-10 39.7 4.3 1.5e-09 37.7 2.2 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|344212470|ref|YP_004796790.1| - 0.02 15.1 0.7 0.13 12.5 0.0 2.6 3 0 0 3 3 3 0 GHMP kinases C terminal Avirulence PF03377.8 gi|344212470|ref|YP_004796790.1| - 0.026 13.2 0.2 0.043 12.5 0.2 1.3 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA UPF0175 PF03683.8 gi|344212471|ref|YP_004796791.1| - 1.8e-16 59.3 1.7 2.7e-16 58.8 1.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_1 PF01402.16 gi|344212471|ref|YP_004796791.1| - 0.0024 17.6 0.9 0.0024 17.6 0.6 2.7 4 0 0 4 4 4 1 Ribbon-helix-helix protein, copG family HTH_psq PF05225.11 gi|344212471|ref|YP_004796791.1| - 0.3 10.6 1.1 1.1 8.8 0.2 2.0 1 1 1 2 2 2 0 helix-turn-helix, Psq domain NYN_YacP PF05991.6 gi|344212472|ref|YP_004796792.1| - 0.016 14.9 0.1 0.021 14.5 0.1 1.2 1 0 0 1 1 1 0 YacP-like NYN domain AA_kinase PF00696.23 gi|344212472|ref|YP_004796792.1| - 0.039 13.4 0.1 0.045 13.2 0.1 1.2 1 0 0 1 1 1 0 Amino acid kinase family PIN_4 PF13638.1 gi|344212472|ref|YP_004796792.1| - 0.083 12.9 0.3 1.4 9.0 0.2 2.1 1 1 0 1 1 1 0 PIN domain Prefoldin_2 PF01920.15 gi|344212473|ref|YP_004796793.1| - 6.6e-27 93.3 23.4 7.4e-27 93.2 16.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit AAA_27 PF13514.1 gi|344212473|ref|YP_004796793.1| - 0.00078 17.2 13.3 0.00099 16.9 9.2 1.0 1 0 0 1 1 1 1 AAA domain FlaC_arch PF05377.6 gi|344212473|ref|YP_004796793.1| - 0.0016 18.3 4.9 0.0016 18.3 3.4 2.4 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) ALIX_LYPXL_bnd PF13949.1 gi|344212473|ref|YP_004796793.1| - 0.0053 15.7 10.8 0.0069 15.3 7.5 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV BLOC1_2 PF10046.4 gi|344212473|ref|YP_004796793.1| - 0.0068 16.5 12.5 0.26 11.4 1.3 2.1 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3584 PF12128.3 gi|344212473|ref|YP_004796793.1| - 0.0096 13.3 13.6 0.012 12.9 9.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Sigma70_ner PF04546.8 gi|344212473|ref|YP_004796793.1| - 0.02 14.5 3.2 0.02 14.5 2.2 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region Laminin_I PF06008.9 gi|344212473|ref|YP_004796793.1| - 0.021 14.1 16.7 0.13 11.5 1.9 2.1 1 1 0 2 2 2 0 Laminin Domain I FlgN PF05130.7 gi|344212473|ref|YP_004796793.1| - 0.023 14.9 10.7 0.036 14.3 7.4 1.2 1 0 0 1 1 1 0 FlgN protein Prefoldin PF02996.12 gi|344212473|ref|YP_004796793.1| - 0.041 13.5 19.0 2 8.0 13.1 2.5 1 1 0 1 1 1 0 Prefoldin subunit MAD PF05557.8 gi|344212473|ref|YP_004796793.1| - 0.046 11.8 14.9 0.059 11.4 10.3 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein Radical_SAM_N PF08497.5 gi|344212473|ref|YP_004796793.1| - 0.077 11.9 2.6 0.091 11.6 1.8 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal ING PF12998.2 gi|344212473|ref|YP_004796793.1| - 0.093 13.0 12.6 0.13 12.5 8.4 1.5 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding Cortex-I_coil PF09304.5 gi|344212473|ref|YP_004796793.1| - 0.11 12.5 19.6 0.49 10.4 3.5 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil CENP-F_leu_zip PF10473.4 gi|344212473|ref|YP_004796793.1| - 0.12 12.2 23.2 0.47 10.3 4.3 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Leu_zip PF15294.1 gi|344212473|ref|YP_004796793.1| - 0.12 11.4 13.3 0.17 10.9 9.2 1.1 1 0 0 1 1 1 0 Leucine zipper TPR_MLP1_2 PF07926.7 gi|344212473|ref|YP_004796793.1| - 0.14 11.8 21.1 0.26 11.0 14.6 1.4 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF3610 PF12272.3 gi|344212473|ref|YP_004796793.1| - 0.16 11.6 1.2 0.23 11.1 0.6 1.5 1 1 1 2 2 1 0 Protein of unknown function (DUF3610) Baculo_PEP_C PF04513.7 gi|344212473|ref|YP_004796793.1| - 0.16 11.7 9.9 0.28 10.9 6.8 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus SlyX PF04102.7 gi|344212473|ref|YP_004796793.1| - 0.2 12.0 0.2 0.2 12.0 0.1 2.5 2 1 0 2 2 1 0 SlyX SLY PF12485.3 gi|344212473|ref|YP_004796793.1| - 0.25 11.5 2.3 0.48 10.6 1.6 1.5 1 1 0 1 1 1 0 Lymphocyte signaling adaptor protein AATF-Che1 PF13339.1 gi|344212473|ref|YP_004796793.1| - 0.31 11.1 7.3 2.7 8.1 0.9 2.2 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor RNA_pol_Rpb1_1 PF04997.7 gi|344212473|ref|YP_004796793.1| - 0.36 10.0 3.5 0.45 9.7 2.5 1.0 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 1 Laminin_II PF06009.7 gi|344212473|ref|YP_004796793.1| - 0.37 10.5 11.2 0.71 9.6 7.8 1.5 1 1 0 1 1 1 0 Laminin Domain II WXG100 PF06013.7 gi|344212473|ref|YP_004796793.1| - 0.37 10.8 14.5 3.3 7.7 3.9 2.9 2 1 1 3 3 3 0 Proteins of 100 residues with WXG EzrA PF06160.7 gi|344212473|ref|YP_004796793.1| - 0.42 8.7 16.2 0.62 8.1 11.2 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA CDC37_N PF03234.9 gi|344212473|ref|YP_004796793.1| - 0.43 10.8 11.8 0.55 10.5 8.2 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding Syntaxin-6_N PF09177.6 gi|344212473|ref|YP_004796793.1| - 0.45 10.9 13.5 0.11 12.9 1.2 2.3 1 1 0 2 2 2 0 Syntaxin 6, N-terminal eIF3_subunit PF08597.5 gi|344212473|ref|YP_004796793.1| - 0.47 9.9 10.7 0.61 9.5 7.4 1.1 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit Seryl_tRNA_N PF02403.17 gi|344212473|ref|YP_004796793.1| - 0.48 10.4 16.6 0.29 11.1 1.8 2.1 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF3091 PF11291.3 gi|344212473|ref|YP_004796793.1| - 0.68 9.9 3.7 1.8 8.6 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3091) DUF4164 PF13747.1 gi|344212473|ref|YP_004796793.1| - 0.68 10.0 15.1 0.06 13.4 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) Sec8_exocyst PF04048.9 gi|344212473|ref|YP_004796793.1| - 0.88 9.1 9.5 0.39 10.3 1.4 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain FUSC PF04632.7 gi|344212473|ref|YP_004796793.1| - 0.93 7.8 3.7 1.2 7.4 2.6 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF2408 PF10303.4 gi|344212473|ref|YP_004796793.1| - 0.96 9.5 11.3 13 5.9 7.9 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) ERM PF00769.14 gi|344212473|ref|YP_004796793.1| - 1 8.8 22.9 1.8 8.0 15.9 1.3 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Fzo_mitofusin PF04799.8 gi|344212473|ref|YP_004796793.1| - 1.3 8.4 13.3 1.8 7.9 2.5 2.1 1 1 1 2 2 2 0 fzo-like conserved region Myosin_tail_1 PF01576.14 gi|344212473|ref|YP_004796793.1| - 1.3 6.6 22.4 8.5 3.9 15.5 1.5 1 1 0 1 1 1 0 Myosin tail NPV_P10 PF05531.7 gi|344212473|ref|YP_004796793.1| - 1.4 9.2 10.6 1.5 9.1 0.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein V-SNARE PF05008.10 gi|344212473|ref|YP_004796793.1| - 1.4 9.1 17.3 2.2 8.4 3.5 2.2 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus PRP1_N PF06424.7 gi|344212473|ref|YP_004796793.1| - 1.4 9.2 9.7 2.2 8.6 6.7 1.3 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Spc24 PF08286.6 gi|344212473|ref|YP_004796793.1| - 1.4 8.6 21.2 1.4 8.6 3.7 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF2383 PF09537.5 gi|344212473|ref|YP_004796793.1| - 1.5 9.0 12.9 0.59 10.3 2.7 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF2383) Med10 PF09748.4 gi|344212473|ref|YP_004796793.1| - 1.6 8.5 7.6 50 3.7 5.3 2.1 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex Fib_alpha PF08702.5 gi|344212473|ref|YP_004796793.1| - 1.7 8.7 11.9 0.34 11.0 1.2 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family PilJ PF13675.1 gi|344212473|ref|YP_004796793.1| - 1.7 8.9 13.3 0.66 10.3 1.0 2.3 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term P4Ha_N PF08336.6 gi|344212473|ref|YP_004796793.1| - 1.9 8.3 8.1 1.6 8.5 1.1 2.1 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Vps51 PF08700.6 gi|344212473|ref|YP_004796793.1| - 2.1 8.2 12.4 0.21 11.4 0.9 2.3 2 0 0 2 2 2 0 Vps51/Vps67 Reo_sigmaC PF04582.7 gi|344212473|ref|YP_004796793.1| - 2.4 7.2 4.6 7.8 5.5 3.2 1.6 1 1 0 1 1 1 0 Reovirus sigma C capsid protein bZIP_1 PF00170.16 gi|344212473|ref|YP_004796793.1| - 2.7 7.9 15.3 0.15 12.0 2.2 2.2 2 0 0 2 2 2 0 bZIP transcription factor IncA PF04156.9 gi|344212473|ref|YP_004796793.1| - 3.3 7.2 29.5 17 4.9 20.4 1.8 1 1 0 1 1 1 0 IncA protein AAA_13 PF13166.1 gi|344212473|ref|YP_004796793.1| - 3.6 5.9 14.4 12 4.2 10.0 1.6 1 1 0 1 1 1 0 AAA domain Bac_GDH PF05088.7 gi|344212473|ref|YP_004796793.1| - 3.8 4.7 7.4 4.6 4.5 5.1 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase DUF2681 PF10883.3 gi|344212473|ref|YP_004796793.1| - 3.9 7.7 16.4 0.77 10.0 3.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) DUF3347 PF11827.3 gi|344212473|ref|YP_004796793.1| - 4.1 7.3 7.6 5.7 6.9 5.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DUF935 PF06074.7 gi|344212473|ref|YP_004796793.1| - 4.1 5.9 10.7 4.9 5.7 7.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF935) DUF4657 PF15552.1 gi|344212473|ref|YP_004796793.1| - 4.2 6.5 11.0 5.1 6.2 7.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) ISG65-75 PF11727.3 gi|344212473|ref|YP_004796793.1| - 4.4 6.2 7.4 5.6 5.9 5.1 1.2 1 0 0 1 1 1 0 Invariant surface glycoprotein DUF1664 PF07889.7 gi|344212473|ref|YP_004796793.1| - 4.5 7.0 11.3 1.1 9.1 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) GCN5L1 PF06320.8 gi|344212473|ref|YP_004796793.1| - 4.7 7.0 10.5 8.4 6.2 1.5 2.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Tropomyosin_1 PF12718.2 gi|344212473|ref|YP_004796793.1| - 4.8 7.0 27.6 0.9 9.3 6.5 2.0 1 1 1 2 2 2 0 Tropomyosin like AF0941-like PF14591.1 gi|344212473|ref|YP_004796793.1| - 4.9 7.2 14.5 0.97 9.4 3.5 2.4 1 1 1 2 2 2 0 AF0941-like DUF972 PF06156.8 gi|344212473|ref|YP_004796793.1| - 5.6 7.3 17.2 7.2 7.0 3.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) FlxA PF14282.1 gi|344212473|ref|YP_004796793.1| - 6.1 6.8 21.7 0.48 10.3 3.5 2.2 2 0 0 2 2 2 0 FlxA-like protein XhlA PF10779.4 gi|344212473|ref|YP_004796793.1| - 6.3 6.7 15.8 0.16 11.8 1.4 2.3 2 0 0 2 2 2 0 Haemolysin XhlA SseC PF04888.7 gi|344212473|ref|YP_004796793.1| - 6.3 6.0 16.2 0.22 10.8 1.7 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family IFT57 PF10498.4 gi|344212473|ref|YP_004796793.1| - 6.6 5.3 16.9 7.3 5.2 3.6 1.9 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 DUF3450 PF11932.3 gi|344212473|ref|YP_004796793.1| - 7.8 5.6 23.0 2.2 7.4 6.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Flagellin_N PF00669.15 gi|344212473|ref|YP_004796793.1| - 7.8 6.2 11.2 8.6 6.1 5.0 2.1 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region vATP-synt_E PF01991.13 gi|344212473|ref|YP_004796793.1| - 8.3 5.6 16.5 0.14 11.4 1.6 2.9 1 1 2 3 3 3 0 ATP synthase (E/31 kDa) subunit ACCA PF03255.9 gi|344212473|ref|YP_004796793.1| - 8.4 5.9 8.5 3.4 7.1 1.0 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Prominin PF05478.6 gi|344212473|ref|YP_004796793.1| - 8.4 3.7 8.9 2 5.8 0.4 1.8 1 1 1 2 2 2 0 Prominin Herpes_UL6 PF01763.11 gi|344212473|ref|YP_004796793.1| - 8.5 4.4 14.1 1.8 6.6 1.9 2.0 1 1 1 2 2 2 0 Herpesvirus UL6 like YtxH PF12732.2 gi|344212473|ref|YP_004796793.1| - 8.5 6.8 12.9 7e+02 0.6 8.7 2.6 1 1 0 1 1 1 0 YtxH-like protein DUF342 PF03961.8 gi|344212473|ref|YP_004796793.1| - 8.5 4.6 11.3 17 3.6 7.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Glyco_hydro_4C PF11975.3 gi|344212473|ref|YP_004796793.1| - 8.5 6.0 8.4 16 5.1 5.8 1.4 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain eIF3_N PF09440.5 gi|344212473|ref|YP_004796793.1| - 8.8 6.5 14.5 0.85 9.7 2.7 2.1 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain GAS PF13851.1 gi|344212473|ref|YP_004796793.1| - 8.9 5.4 20.9 21 4.2 14.5 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|344212473|ref|YP_004796793.1| - 9.1 3.9 18.0 50 1.5 11.3 1.9 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Spectrin PF00435.16 gi|344212473|ref|YP_004796793.1| - 9.3 6.5 18.3 17 5.7 11.9 1.9 1 1 0 1 1 1 0 Spectrin repeat Viral_P18 PF04521.8 gi|344212473|ref|YP_004796793.1| - 9.5 5.6 9.3 1.6 8.2 0.7 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF3194 PF11419.3 gi|344212474|ref|YP_004796794.1| - 0.0086 16.2 4.3 0.01 16.0 3.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) RVT_2 PF07727.9 gi|344212474|ref|YP_004796794.1| - 0.026 13.5 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) DUF1510 PF07423.6 gi|344212476|ref|YP_004796796.1| - 0.068 12.5 16.3 4.5 6.5 9.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) DNase-RNase PF02577.9 gi|344212477|ref|YP_004796797.1| - 5.6e-39 132.4 0.0 7e-39 132.1 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease HAD_2 PF13419.1 gi|344212478|ref|YP_004796798.1| - 1.1e-17 64.8 0.2 1.3e-17 64.5 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344212478|ref|YP_004796798.1| - 1.2e-11 44.1 0.1 2.2e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|344212478|ref|YP_004796798.1| - 0.00011 22.7 0.0 0.0056 17.1 0.0 2.2 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344212478|ref|YP_004796798.1| - 0.018 15.1 0.1 0.03 14.5 0.1 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase PAS_9 PF13426.1 gi|344212479|ref|YP_004796799.1| - 1.5e-20 73.5 0.2 1.5e-11 44.5 0.1 3.3 2 1 0 2 2 2 2 PAS domain HTH_10 PF04967.7 gi|344212479|ref|YP_004796799.1| - 3.6e-19 68.0 0.0 7.6e-19 67.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|344212479|ref|YP_004796799.1| - 6e-15 56.0 4.7 2e-14 54.2 0.2 3.0 2 1 0 2 2 2 1 GAF domain PAS PF00989.19 gi|344212479|ref|YP_004796799.1| - 2e-13 50.0 0.1 1.3e-08 34.5 0.1 3.1 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|344212479|ref|YP_004796799.1| - 1.1e-11 44.7 9.1 5.9e-06 26.2 0.1 4.7 4 1 0 4 4 3 2 PAS fold PAS_8 PF13188.1 gi|344212479|ref|YP_004796799.1| - 6.7e-08 32.1 0.0 0.00067 19.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|344212479|ref|YP_004796799.1| - 2e-07 31.1 1.9 0.0007 19.6 0.1 2.6 2 0 0 2 2 2 2 GAF domain GAF PF01590.21 gi|344212479|ref|YP_004796799.1| - 9.2e-06 25.8 2.6 6.2e-05 23.1 0.1 3.3 3 1 0 3 3 3 1 GAF domain Sigma70_r4 PF04545.11 gi|344212479|ref|YP_004796799.1| - 0.00059 19.0 0.1 0.0019 17.4 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|344212479|ref|YP_004796799.1| - 0.0013 18.3 0.0 0.0035 16.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MAT1 PF06391.8 gi|344212479|ref|YP_004796799.1| - 0.0072 15.9 3.3 0.3 10.6 0.0 2.6 2 0 0 2 2 2 1 CDK-activating kinase assembly factor MAT1 GerE PF00196.14 gi|344212479|ref|YP_004796799.1| - 0.0098 15.1 0.1 0.076 12.3 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|344212479|ref|YP_004796799.1| - 0.029 13.7 0.0 0.068 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PAS_3 PF08447.6 gi|344212479|ref|YP_004796799.1| - 0.041 13.9 0.0 0.17 11.9 0.0 2.1 2 0 0 2 2 1 0 PAS fold HTH_22 PF13309.1 gi|344212479|ref|YP_004796799.1| - 0.11 12.2 0.0 0.52 10.1 0.0 2.2 1 0 0 1 1 1 0 HTH domain Terpene_synth_C PF03936.11 gi|344212481|ref|YP_004796801.1| - 0.0017 17.6 0.1 0.0026 17.0 0.0 1.2 1 0 0 1 1 1 1 Terpene synthase family, metal binding domain HMGL-like PF00682.14 gi|344212482|ref|YP_004796802.1| - 5.8e-58 196.3 0.1 1.2e-57 195.3 0.1 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|344212482|ref|YP_004796802.1| - 2.4e-30 105.0 2.5 5.9e-30 103.7 1.8 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF192 PF02643.10 gi|344212483|ref|YP_004796803.1| - 1.4e-22 79.4 0.0 1.6e-22 79.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HNH PF01844.18 gi|344212484|ref|YP_004796804.1| - 0.016 15.0 2.1 0.035 13.9 1.4 1.6 1 0 0 1 1 1 0 HNH endonuclease C1_1 PF00130.17 gi|344212484|ref|YP_004796804.1| - 0.063 13.0 2.7 0.084 12.6 0.2 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF968 PF06147.6 gi|344212484|ref|YP_004796804.1| - 0.13 12.1 1.9 0.21 11.4 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF968) DUF2387 PF09526.5 gi|344212484|ref|YP_004796804.1| - 0.27 11.1 2.2 0.33 10.9 0.4 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) HATPase_c PF02518.21 gi|344212485|ref|YP_004796805.1| - 4.4e-12 45.6 0.0 1e-11 44.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|344212485|ref|YP_004796805.1| - 3.2e-05 23.5 0.0 5.3e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|344212485|ref|YP_004796805.1| - 0.0028 17.5 0.3 0.0056 16.6 0.2 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Myosin_N PF02736.14 gi|344212485|ref|YP_004796805.1| - 0.066 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain DUF1049 PF06305.6 gi|344212485|ref|YP_004796805.1| - 0.11 11.9 0.8 0.24 10.8 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) SPOB_a PF14689.1 gi|344212485|ref|YP_004796805.1| - 0.17 11.4 0.1 0.34 10.5 0.1 1.5 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain GATase PF00117.23 gi|344212486|ref|YP_004796806.1| - 5.8e-36 123.7 0.0 6.5e-36 123.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|344212486|ref|YP_004796806.1| - 4.6e-14 52.3 1.4 5.6e-13 48.8 0.1 2.7 2 1 0 2 2 2 1 Peptidase C26 DUF2070 PF09843.4 gi|344212487|ref|YP_004796807.1| - 2.8e-56 189.8 0.1 4.4e-56 189.1 0.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Trp_oprn_chp PF09534.5 gi|344212487|ref|YP_004796807.1| - 1.1 8.7 12.6 0.046 13.3 3.2 2.4 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3087 PF11286.3 gi|344212487|ref|YP_004796807.1| - 2.6 7.2 8.1 0.36 10.0 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) AAA_3 PF07726.6 gi|344212488|ref|YP_004796808.1| - 5e-66 220.2 0.1 8.3e-66 219.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344212488|ref|YP_004796808.1| - 9.9e-16 57.7 0.0 4.1e-15 55.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|344212488|ref|YP_004796808.1| - 4.2e-07 30.2 0.0 1.9e-06 28.1 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|344212488|ref|YP_004796808.1| - 6.2e-05 22.5 0.0 0.00041 19.8 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|344212488|ref|YP_004796808.1| - 0.00014 20.8 0.0 0.0046 15.8 0.0 2.3 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|344212488|ref|YP_004796808.1| - 0.0011 18.1 0.1 1.3 8.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|344212488|ref|YP_004796808.1| - 0.0025 16.9 0.0 0.023 13.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus DUF3071 PF11268.3 gi|344212488|ref|YP_004796808.1| - 0.0075 16.0 0.8 0.016 14.9 0.5 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3071) AAA_2 PF07724.9 gi|344212488|ref|YP_004796808.1| - 0.046 13.6 0.0 0.24 11.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) GtrA PF04138.9 gi|344212489|ref|YP_004796809.1| - 1.7e-20 73.0 6.1 2e-20 72.8 4.2 1.0 1 0 0 1 1 1 1 GtrA-like protein Sulfatase PF00884.18 gi|344212490|ref|YP_004796810.1| - 5.5e-34 117.7 0.0 7.3e-34 117.3 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|344212490|ref|YP_004796810.1| - 6e-08 32.3 0.1 4.9e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|344212490|ref|YP_004796810.1| - 0.0038 16.6 0.0 0.008 15.5 0.0 1.4 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF1501 PF07394.7 gi|344212490|ref|YP_004796810.1| - 0.021 13.6 0.1 0.037 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Acetyltransf_1 PF00583.19 gi|344212491|ref|YP_004796811.1| - 8.6e-13 48.1 0.0 1.3e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|344212491|ref|YP_004796811.1| - 5.9e-08 32.3 0.0 9.3e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|344212491|ref|YP_004796811.1| - 8.3e-07 29.0 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344212491|ref|YP_004796811.1| - 9.4e-05 22.5 0.0 0.00014 21.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344212491|ref|YP_004796811.1| - 0.0011 18.7 0.2 0.0023 17.8 0.1 1.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344212491|ref|YP_004796811.1| - 0.002 18.0 0.0 0.002 17.9 0.0 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|344212491|ref|YP_004796811.1| - 0.043 13.4 0.1 0.068 12.7 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344212491|ref|YP_004796811.1| - 0.043 13.7 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|344212491|ref|YP_004796811.1| - 0.049 12.9 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 ABC1 PF03109.11 gi|344212492|ref|YP_004796812.1| - 3.4e-27 94.7 0.0 8.5e-27 93.5 0.0 1.6 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|344212492|ref|YP_004796812.1| - 0.0013 18.5 0.3 0.01 15.5 0.1 2.4 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|344212492|ref|YP_004796812.1| - 0.055 12.6 0.0 0.16 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein kinase domain HSP20 PF00011.16 gi|344212493|ref|YP_004796813.1| - 3e-11 43.0 0.0 3.5e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|344212493|ref|YP_004796813.1| - 0.0018 17.9 0.3 0.028 14.0 0.4 2.0 2 0 0 2 2 2 1 GvpH GIDE PF12483.3 gi|344212494|ref|YP_004796814.1| - 1.4e-07 31.0 0.6 4.6e-07 29.3 0.3 1.8 2 1 0 2 2 2 1 E3 Ubiquitin ligase DUF3592 PF12158.3 gi|344212494|ref|YP_004796814.1| - 0.0033 17.2 0.0 0.007 16.1 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) MoCF_biosynth PF00994.19 gi|344212495|ref|YP_004796815.1| - 2.3e-11 43.2 0.1 3.3e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|344212495|ref|YP_004796815.1| - 5.9e-06 26.1 0.0 1.4e-05 24.9 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|344212495|ref|YP_004796815.1| - 0.00093 18.5 0.0 0.3 10.4 0.0 2.5 1 1 1 2 2 2 2 MoeA N-terminal region (domain I and II) PDE8 PF08629.5 gi|344212495|ref|YP_004796815.1| - 0.29 10.9 2.5 5.4 6.8 0.3 2.5 1 1 1 2 2 2 0 PDE8 phosphodiesterase HAD_2 PF13419.1 gi|344212496|ref|YP_004796816.1| - 1.8e-27 96.6 0.2 2.1e-27 96.4 0.2 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344212496|ref|YP_004796816.1| - 1.3e-07 32.3 0.0 4.7e-06 27.1 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344212496|ref|YP_004796816.1| - 0.00012 22.3 0.1 0.00018 21.7 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344212496|ref|YP_004796816.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like Pterin_4a PF01329.14 gi|344212498|ref|YP_004796818.1| - 9.2e-24 83.0 0.0 9.6e-24 82.9 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|344212498|ref|YP_004796818.1| - 0.0082 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Translation-initiation factor 2 GlutR_N PF05201.10 gi|344212499|ref|YP_004796819.1| - 9.8e-35 119.3 0.1 2.6e-34 118.0 0.1 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|344212499|ref|YP_004796819.1| - 1.4e-23 83.4 0.5 3.2e-23 82.3 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|344212499|ref|YP_004796819.1| - 2.3e-22 78.8 2.3 5.7e-22 77.5 1.6 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain NAD_binding_2 PF03446.10 gi|344212499|ref|YP_004796819.1| - 0.00021 21.1 3.0 0.00049 19.9 0.1 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|344212499|ref|YP_004796819.1| - 0.0059 15.6 0.9 0.013 14.5 0.6 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase DUF4476 PF14771.1 gi|344212499|ref|YP_004796819.1| - 0.027 14.4 0.1 0.053 13.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4476) zf-C4H2 PF10146.4 gi|344212499|ref|YP_004796819.1| - 0.089 12.8 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein NAD_binding_7 PF13241.1 gi|344212499|ref|YP_004796819.1| - 0.2 11.9 2.0 0.28 11.4 0.1 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.13 gi|344212499|ref|YP_004796819.1| - 0.42 10.6 6.7 0.31 11.0 1.0 2.7 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|344212500|ref|YP_004796820.1| - 1.1e-22 80.2 0.0 1.5e-22 79.7 0.0 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding Oxidored_nitro PF00148.14 gi|344212500|ref|YP_004796820.1| - 0.0072 15.0 0.1 0.0091 14.6 0.1 1.1 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase TrkA_N PF02254.13 gi|344212500|ref|YP_004796820.1| - 0.071 13.1 0.3 0.25 11.3 0.2 1.8 1 1 0 1 1 1 0 TrkA-N domain CysG_dimeriser PF10414.4 gi|344212500|ref|YP_004796820.1| - 0.31 10.5 2.8 0.23 10.9 0.2 2.1 2 1 1 3 3 3 0 Sirohaem synthase dimerisation region zf-ribbon_3 PF13248.1 gi|344212502|ref|YP_004796822.1| - 0.00014 20.9 1.5 0.00019 20.5 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|344212502|ref|YP_004796822.1| - 0.0011 18.7 0.7 0.0013 18.4 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344212502|ref|YP_004796822.1| - 0.11 12.0 1.4 0.16 11.4 1.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain CSD PF00313.17 gi|344212504|ref|YP_004796824.1| - 7.6e-21 73.6 0.1 8.4e-21 73.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|344212504|ref|YP_004796824.1| - 0.0043 16.7 1.9 0.0063 16.2 1.3 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|344212504|ref|YP_004796824.1| - 0.015 14.7 2.6 0.022 14.2 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|344212504|ref|YP_004796824.1| - 0.054 13.3 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF CSD PF00313.17 gi|344212505|ref|YP_004796825.1| - 1.5e-21 75.9 0.1 1.6e-21 75.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|344212505|ref|YP_004796825.1| - 0.0074 15.9 3.2 0.014 15.0 2.2 1.6 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|344212505|ref|YP_004796825.1| - 0.008 16.0 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|344212505|ref|YP_004796825.1| - 0.041 13.3 2.4 0.063 12.7 1.7 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain Prenyltransf PF01255.14 gi|344212506|ref|YP_004796826.1| - 3.2e-72 242.2 0.0 4.3e-72 241.8 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Acetyltransf_1 PF00583.19 gi|344212506|ref|YP_004796826.1| - 0.11 12.5 0.2 13 5.9 0.0 2.5 1 1 1 2 2 2 0 Acetyltransferase (GNAT) family CamS PF07537.6 gi|344212506|ref|YP_004796826.1| - 0.15 11.0 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 CamS sex pheromone cAM373 precursor Prenyltransf PF01255.14 gi|344212507|ref|YP_004796827.1| - 5.9e-29 100.7 0.0 2.8e-28 98.5 0.0 1.8 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase DUF92 PF01940.11 gi|344212508|ref|YP_004796828.1| - 2.8e-62 209.8 18.2 2.8e-62 209.8 12.6 2.9 3 1 0 3 3 3 1 Integral membrane protein DUF92 Acetyltransf_1 PF00583.19 gi|344212509|ref|YP_004796829.1| - 5e-13 48.8 0.0 6.8e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344212509|ref|YP_004796829.1| - 7.7e-09 35.6 0.0 1.1e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344212509|ref|YP_004796829.1| - 4.5e-07 29.9 0.0 5.2e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344212509|ref|YP_004796829.1| - 2.1e-05 24.3 0.1 4.5e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344212509|ref|YP_004796829.1| - 3.4e-05 23.5 0.0 5.8e-05 22.7 0.0 1.4 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|344212509|ref|YP_004796829.1| - 0.036 14.2 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Toprim_4 PF13662.1 gi|344212510|ref|YP_004796830.1| - 1.1e-09 38.1 1.1 1.2e-08 34.7 0.4 2.6 2 0 0 2 2 2 1 Toprim domain Toprim PF01751.17 gi|344212510|ref|YP_004796830.1| - 0.088 12.7 0.3 1.2 9.1 0.2 2.7 1 1 0 1 1 1 0 Toprim domain AP_endonuc_2 PF01261.19 gi|344212511|ref|YP_004796831.1| - 2.9e-18 65.9 2.2 1.2e-17 63.9 0.9 2.2 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel tRNA_bind PF01588.15 gi|344212512|ref|YP_004796832.1| - 7.5e-20 70.5 0.0 8.5e-20 70.3 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain DUF3311 PF11755.3 gi|344212513|ref|YP_004796833.1| - 7.3e-13 47.8 13.8 8.6e-13 47.6 9.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4305 PF14146.1 gi|344212513|ref|YP_004796833.1| - 0.032 13.9 1.0 0.21 11.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4305) DUF2975 PF11188.3 gi|344212513|ref|YP_004796833.1| - 0.73 9.5 5.6 0.8 9.4 3.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3154 PF11351.3 gi|344212513|ref|YP_004796833.1| - 2.7 7.7 7.1 3.2 7.5 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) FA_desaturase PF00487.19 gi|344212513|ref|YP_004796833.1| - 5.1 6.4 11.2 5.2 6.4 7.7 1.0 1 0 0 1 1 1 0 Fatty acid desaturase SSF PF00474.12 gi|344212514|ref|YP_004796834.1| - 2e-39 135.4 27.1 2.9e-39 134.8 18.8 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF2892 PF11127.3 gi|344212515|ref|YP_004796835.1| - 1.5e-11 43.9 0.0 1.8e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) DUF1887 PF09002.6 gi|344212516|ref|YP_004796836.1| - 0.0021 16.5 0.0 0.0029 16.0 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1887) DUF3567 PF12091.3 gi|344212516|ref|YP_004796836.1| - 0.054 13.4 0.1 0.15 12.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) tRNA-synt_1 PF00133.17 gi|344212517|ref|YP_004796837.1| - 2.1e-128 428.9 0.0 1.7e-127 425.9 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|344212517|ref|YP_004796837.1| - 8.8e-36 122.9 0.0 2e-35 121.7 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|344212517|ref|YP_004796837.1| - 7.4e-24 84.1 0.3 1.4e-11 43.7 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|344212517|ref|YP_004796837.1| - 2.6e-06 26.8 0.0 5.9e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|344212517|ref|YP_004796837.1| - 3.2e-05 22.7 0.0 0.0013 17.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|344212517|ref|YP_004796837.1| - 0.00092 18.4 0.0 0.34 9.9 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain zf-dskA_traR PF01258.12 gi|344212517|ref|YP_004796837.1| - 0.0044 16.7 0.3 0.0044 16.7 0.2 2.5 3 0 0 3 3 2 1 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.2 gi|344212517|ref|YP_004796837.1| - 0.0071 16.1 0.3 0.17 11.7 0.0 2.4 2 0 0 2 2 2 1 Double zinc ribbon Lar_restr_allev PF14354.1 gi|344212517|ref|YP_004796837.1| - 0.097 12.9 6.4 5.6 7.3 0.3 4.0 2 1 1 3 3 3 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|344212517|ref|YP_004796837.1| - 0.89 8.8 3.3 1.9 7.7 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344212517|ref|YP_004796837.1| - 1.2 9.1 6.8 13 5.8 2.9 3.2 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|344212517|ref|YP_004796837.1| - 1.8 8.3 9.5 1.6 8.4 2.2 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Gluconate_2-dh3 PF13618.1 gi|344212518|ref|YP_004796838.1| - 0.011 15.8 0.2 0.011 15.8 0.1 1.0 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 FliT PF05400.8 gi|344212518|ref|YP_004796838.1| - 0.31 11.4 2.9 0.36 11.2 2.0 1.2 1 0 0 1 1 1 0 Flagellar protein FliT DUF1405 PF07187.6 gi|344212519|ref|YP_004796839.1| - 6.4e-52 175.5 14.4 7.8e-52 175.3 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) SOR_SNZ PF01680.12 gi|344212520|ref|YP_004796840.1| - 2.1e-95 318.2 6.8 3e-95 317.7 4.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|344212520|ref|YP_004796840.1| - 9.1e-12 44.5 1.6 2.8e-06 26.6 0.1 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|344212520|ref|YP_004796840.1| - 0.00019 20.4 1.7 0.011 14.6 0.1 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.19 gi|344212520|ref|YP_004796840.1| - 0.0013 18.2 0.4 1 8.7 0.0 2.8 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.16 gi|344212520|ref|YP_004796840.1| - 0.0052 15.8 0.1 0.065 12.2 0.0 2.3 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|344212520|ref|YP_004796840.1| - 0.0093 14.9 0.4 0.32 9.9 0.0 2.4 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase MS_channel PF00924.13 gi|344212521|ref|YP_004796841.1| - 4.9e-49 166.4 0.0 1.1e-48 165.2 0.0 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF3172 PF11371.3 gi|344212521|ref|YP_004796841.1| - 0.15 11.5 0.4 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3172) DUF2150 PF09920.4 gi|344212523|ref|YP_004796843.1| - 2.4e-73 245.7 7.8 2.8e-73 245.5 5.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.11 gi|344212524|ref|YP_004796844.1| - 1.1e-05 25.2 4.9 1.1e-05 25.2 3.4 4.0 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) DUF824 PF05688.6 gi|344212524|ref|YP_004796844.1| - 0.00055 19.5 4.6 0.036 13.6 0.1 4.3 3 0 0 3 3 3 2 Salmonella repeat of unknown function (DUF824) PKD PF00801.15 gi|344212524|ref|YP_004796844.1| - 1.1 9.0 16.4 0.13 12.0 3.1 4.8 4 2 0 4 4 4 0 PKD domain CAP PF00188.21 gi|344212525|ref|YP_004796845.1| - 0.036 14.5 0.1 0.061 13.8 0.1 1.4 1 0 0 1 1 1 0 Cysteine-rich secretory protein family HMG_CoA_synt_N PF01154.12 gi|344212527|ref|YP_004796847.1| - 3.4e-27 95.0 0.0 5e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|344212527|ref|YP_004796847.1| - 4.6e-16 59.1 0.0 1.3e-15 57.6 0.0 1.6 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal GrpB PF04229.9 gi|344212528|ref|YP_004796848.1| - 1.1e-51 174.9 0.0 1.2e-51 174.7 0.0 1.0 1 0 0 1 1 1 1 GrpB protein Glyco_transf_34 PF05637.7 gi|344212528|ref|YP_004796848.1| - 0.079 12.4 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 galactosyl transferase GMA12/MNN10 family HTH_31 PF13560.1 gi|344212529|ref|YP_004796849.1| - 7.6e-09 35.6 0.1 2.3e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|344212529|ref|YP_004796849.1| - 1.8e-08 34.0 0.0 3.8e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|344212529|ref|YP_004796849.1| - 2.3e-07 30.7 0.0 8.5e-07 28.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344212529|ref|YP_004796849.1| - 0.033 13.8 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 MarR family IspD PF01128.14 gi|344212529|ref|YP_004796849.1| - 0.042 13.3 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Phage_CI_repr PF07022.8 gi|344212529|ref|YP_004796849.1| - 0.14 12.3 0.0 0.61 10.1 0.0 2.1 2 1 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain DUF1628 PF07790.6 gi|344212530|ref|YP_004796850.1| - 5e-11 43.2 0.1 1.7e-10 41.5 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) MraZ PF02381.13 gi|344212532|ref|YP_004796852.1| - 0.00071 19.2 0.7 0.0026 17.4 0.0 2.0 2 1 0 2 2 2 1 MraZ protein Antitoxin-MazE PF04014.13 gi|344212532|ref|YP_004796852.1| - 0.0058 16.3 0.0 0.012 15.2 0.0 1.6 1 1 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|344212533|ref|YP_004796853.1| - 1.5e-06 28.5 1.1 1.8e-06 28.2 0.7 1.2 1 0 0 1 1 1 1 PIN domain DUF128 PF01995.11 gi|344212533|ref|YP_004796853.1| - 0.042 12.7 0.0 0.051 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF128 IspD PF01128.14 gi|344212533|ref|YP_004796853.1| - 0.063 12.7 0.1 0.088 12.3 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAA PF00004.24 gi|344212534|ref|YP_004796854.1| - 7.4e-11 42.3 0.0 2.3e-10 40.7 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|344212534|ref|YP_004796854.1| - 6.4e-07 29.5 0.0 0.03 14.3 0.0 3.5 2 1 1 3 3 3 2 AAA ATPase domain RuvB_N PF05496.7 gi|344212534|ref|YP_004796854.1| - 8.3e-06 25.0 0.0 1.6e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|344212534|ref|YP_004796854.1| - 9.5e-06 25.7 0.0 0.00025 21.1 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344212534|ref|YP_004796854.1| - 1.8e-05 25.5 0.6 0.00014 22.6 0.4 2.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|344212534|ref|YP_004796854.1| - 2.9e-05 22.9 0.0 0.034 12.8 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|344212534|ref|YP_004796854.1| - 0.00072 18.7 0.0 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|344212534|ref|YP_004796854.1| - 0.0026 17.6 0.0 0.0089 15.9 0.0 2.0 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|344212534|ref|YP_004796854.1| - 0.0029 17.2 0.0 0.021 14.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.9 gi|344212534|ref|YP_004796854.1| - 0.0041 16.8 0.1 0.031 13.9 0.0 2.4 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|344212534|ref|YP_004796854.1| - 0.006 16.7 0.0 0.089 12.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_28 PF13521.1 gi|344212534|ref|YP_004796854.1| - 0.007 16.3 0.1 0.024 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|344212534|ref|YP_004796854.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|344212534|ref|YP_004796854.1| - 0.013 15.7 0.2 0.13 12.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|344212534|ref|YP_004796854.1| - 0.025 13.7 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase AAA_14 PF13173.1 gi|344212534|ref|YP_004796854.1| - 0.025 14.4 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|344212534|ref|YP_004796854.1| - 0.052 13.1 0.0 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain TIP49 PF06068.8 gi|344212534|ref|YP_004796854.1| - 0.079 11.6 0.0 1.3 7.6 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus DUF815 PF05673.8 gi|344212534|ref|YP_004796854.1| - 0.089 11.6 0.0 0.2 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) BPD_transp_1 PF00528.17 gi|344212535|ref|YP_004796855.1| - 2.7e-20 72.6 8.1 2.7e-20 72.6 5.6 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|344212536|ref|YP_004796856.1| - 9.2e-32 110.2 0.0 1.2e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212536|ref|YP_004796856.1| - 6.9e-14 52.4 0.0 4.9e-09 36.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344212536|ref|YP_004796856.1| - 8.9e-09 34.9 0.0 8.2e-08 31.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|344212536|ref|YP_004796856.1| - 2e-06 27.9 0.1 3.8e-06 27.0 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|344212536|ref|YP_004796856.1| - 0.00016 21.2 0.0 0.063 12.7 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|344212536|ref|YP_004796856.1| - 0.00021 20.7 0.0 0.00038 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|344212536|ref|YP_004796856.1| - 0.00099 18.7 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344212536|ref|YP_004796856.1| - 0.0059 15.8 0.0 0.0083 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|344212536|ref|YP_004796856.1| - 0.0084 16.2 0.1 0.017 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344212536|ref|YP_004796856.1| - 0.017 15.0 0.6 0.22 11.4 0.1 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|344212536|ref|YP_004796856.1| - 0.017 13.7 0.0 0.46 9.0 0.0 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_15 PF13175.1 gi|344212536|ref|YP_004796856.1| - 0.021 13.9 0.0 0.66 8.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|344212536|ref|YP_004796856.1| - 0.03 13.7 0.2 1.8 7.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|344212536|ref|YP_004796856.1| - 0.042 14.6 0.0 0.082 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain S4 PF01479.20 gi|344212536|ref|YP_004796856.1| - 0.049 13.0 0.0 0.23 10.9 0.0 2.0 2 0 0 2 2 2 0 S4 domain AAA_19 PF13245.1 gi|344212536|ref|YP_004796856.1| - 0.052 13.2 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain AAA_33 PF13671.1 gi|344212536|ref|YP_004796856.1| - 0.067 13.0 0.1 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|344212536|ref|YP_004796856.1| - 0.082 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Arch_ATPase PF01637.13 gi|344212536|ref|YP_004796856.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase AAA PF00004.24 gi|344212536|ref|YP_004796856.1| - 0.13 12.5 0.0 1.1 9.4 0.0 2.5 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|344212536|ref|YP_004796856.1| - 0.15 12.4 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|344212537|ref|YP_004796857.1| - 5.2e-23 81.5 9.6 6.6e-23 81.1 6.7 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|344212538|ref|YP_004796858.1| - 3.2e-58 196.6 0.1 3.7e-58 196.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|344212538|ref|YP_004796858.1| - 0.00033 20.3 0.0 0.0015 18.1 0.0 1.9 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|344212538|ref|YP_004796858.1| - 0.02 14.2 0.1 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein COX15-CtaA PF02628.10 gi|344212539|ref|YP_004796859.1| - 3.8e-21 75.2 13.0 4.6e-21 74.9 9.0 1.1 1 0 0 1 1 1 1 Cytochrome oxidase assembly protein DUF373 PF04123.8 gi|344212539|ref|YP_004796859.1| - 0.28 10.1 1.9 0.37 9.7 1.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) MCPsignal PF00015.16 gi|344212540|ref|YP_004796860.1| - 1.6e-45 155.3 55.7 3.4e-43 147.6 23.1 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|344212540|ref|YP_004796860.1| - 1.7e-12 47.6 0.0 1e-11 45.1 0.0 2.4 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|344212540|ref|YP_004796860.1| - 5.3e-11 42.3 0.0 2.5e-10 40.1 0.0 2.3 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|344212540|ref|YP_004796860.1| - 5.9e-11 42.3 0.4 1.5e-09 37.8 0.0 3.1 2 1 0 2 2 1 1 PAS fold PAS_8 PF13188.1 gi|344212540|ref|YP_004796860.1| - 0.00066 19.4 0.0 0.0026 17.5 0.0 2.0 1 0 0 1 1 1 1 PAS domain TMF_TATA_bd PF12325.3 gi|344212540|ref|YP_004796860.1| - 0.0031 17.2 4.1 0.0031 17.2 2.8 4.2 2 2 1 3 3 3 1 TATA element modulatory factor 1 TATA binding PilJ PF13675.1 gi|344212540|ref|YP_004796860.1| - 0.0086 16.3 0.9 0.0086 16.3 0.6 4.7 2 2 2 4 4 4 1 Type IV pili methyl-accepting chemotaxis transducer N-term DUF745 PF05335.8 gi|344212540|ref|YP_004796860.1| - 0.0088 15.5 10.6 0.0088 15.5 7.3 4.5 3 2 2 5 5 4 1 Protein of unknown function (DUF745) PAS_3 PF08447.6 gi|344212540|ref|YP_004796860.1| - 0.083 13.0 0.0 2.6 8.2 0.0 2.8 1 1 0 1 1 1 0 PAS fold PAS_10 PF13596.1 gi|344212540|ref|YP_004796860.1| - 0.11 12.7 3.2 0.46 10.7 0.0 3.7 3 2 0 4 4 3 0 PAS domain AAA_13 PF13166.1 gi|344212540|ref|YP_004796860.1| - 0.16 10.3 27.7 0.71 8.2 11.6 2.3 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|344212540|ref|YP_004796860.1| - 0.26 11.0 32.6 0.57 9.9 2.2 4.7 3 2 2 5 5 4 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.7 gi|344212540|ref|YP_004796860.1| - 0.27 11.0 31.1 0.41 10.4 4.5 4.3 3 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|344212540|ref|YP_004796860.1| - 0.28 10.9 37.7 0.42 10.3 7.3 4.6 2 2 1 4 4 4 0 Laminin Domain II IFT57 PF10498.4 gi|344212540|ref|YP_004796860.1| - 0.3 9.8 19.2 0.43 9.2 3.6 2.7 2 1 1 3 3 3 0 Intra-flagellar transport protein 57 RF-1 PF00472.15 gi|344212540|ref|YP_004796860.1| - 0.52 10.1 0.0 0.52 10.1 0.0 3.2 4 0 0 4 4 3 0 RF-1 domain YjcZ PF13990.1 gi|344212540|ref|YP_004796860.1| - 0.55 9.3 19.7 1.2 8.1 3.0 3.6 2 1 1 3 3 3 0 YjcZ-like protein Spc7 PF08317.6 gi|344212540|ref|YP_004796860.1| - 0.71 8.4 30.4 0.17 10.5 7.8 3.4 2 1 3 5 5 5 0 Spc7 kinetochore protein Perilipin PF03036.11 gi|344212540|ref|YP_004796860.1| - 0.83 8.4 21.9 0.13 11.0 0.6 3.5 3 2 1 4 4 4 0 Perilipin family Cluap1 PF10234.4 gi|344212540|ref|YP_004796860.1| - 0.95 8.6 18.5 3.3 6.8 0.8 2.4 2 0 0 2 2 2 0 Clusterin-associated protein-1 BLOC1_2 PF10046.4 gi|344212540|ref|YP_004796860.1| - 1.2 9.3 24.7 5.7 7.1 0.7 5.1 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Tropomyosin PF00261.15 gi|344212540|ref|YP_004796860.1| - 1.2 8.1 36.6 0.074 12.1 10.6 2.7 1 1 0 2 2 2 0 Tropomyosin TMP_2 PF06791.8 gi|344212540|ref|YP_004796860.1| - 1.5 8.4 39.6 1.9 8.0 4.7 3.6 1 1 2 3 3 3 0 Prophage tail length tape measure protein IncA PF04156.9 gi|344212540|ref|YP_004796860.1| - 1.5 8.3 25.3 5.4 6.5 9.2 3.1 1 1 1 2 2 2 0 IncA protein DASH_Dam1 PF08653.5 gi|344212540|ref|YP_004796860.1| - 2.1 8.1 8.2 1.5 8.6 0.2 4.5 6 0 0 6 6 6 0 DASH complex subunit Dam1 Fib_alpha PF08702.5 gi|344212540|ref|YP_004796860.1| - 2.6 8.1 20.1 26 4.9 1.6 4.9 4 2 2 6 6 6 0 Fibrinogen alpha/beta chain family APG17 PF04108.7 gi|344212540|ref|YP_004796860.1| - 4.1 6.0 31.1 38 2.9 21.3 3.1 1 1 0 1 1 1 0 Autophagy protein Apg17 AATF-Che1 PF13339.1 gi|344212540|ref|YP_004796860.1| - 4.5 7.4 20.2 3.8 7.6 1.0 3.9 2 1 2 4 4 3 0 Apoptosis antagonizing transcription factor COG2 PF06148.6 gi|344212540|ref|YP_004796860.1| - 6.6 6.6 28.5 0.17 11.7 1.5 5.3 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|344212540|ref|YP_004796860.1| - 7.6 4.2 17.0 22 2.7 11.7 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family GvpK PF05121.7 gi|344212540|ref|YP_004796860.1| - 9.3 6.1 11.2 1.4 8.7 0.2 4.0 4 0 0 4 4 4 0 Gas vesicle protein K PTA_PTB PF01515.14 gi|344212541|ref|YP_004796861.1| - 3.3e-93 312.2 0.0 4.6e-93 311.7 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|344212541|ref|YP_004796861.1| - 1.1e-69 234.8 0.1 1.1e-69 234.8 0.1 1.5 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|344212541|ref|YP_004796861.1| - 4e-31 107.9 0.3 1.7e-28 99.4 0.0 2.8 2 1 0 2 2 2 1 Malic enzyme, N-terminal domain VirB3 PF05101.8 gi|344212542|ref|YP_004796862.1| - 0.025 14.5 0.4 0.025 14.5 0.2 1.1 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Phage_holin_1 PF04531.8 gi|344212542|ref|YP_004796862.1| - 0.11 12.5 1.5 0.14 12.1 1.1 1.1 1 0 0 1 1 1 0 Bacteriophage holin DUF3040 PF11239.3 gi|344212542|ref|YP_004796862.1| - 0.44 10.6 4.3 0.53 10.3 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Pribosyltran PF00156.22 gi|344212545|ref|YP_004796865.1| - 3.8e-19 68.6 0.0 5.6e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|344212545|ref|YP_004796865.1| - 0.021 14.5 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain DUF3984 PF13136.1 gi|344212545|ref|YP_004796865.1| - 0.025 13.7 0.1 0.034 13.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3984) TruD PF01142.13 gi|344212546|ref|YP_004796866.1| - 1.1e-96 323.7 0.0 1.9e-57 194.7 0.0 2.0 2 0 0 2 2 2 2 tRNA pseudouridine synthase D (TruD) DUF2138 PF09909.4 gi|344212546|ref|YP_004796866.1| - 0.13 10.4 0.1 0.19 9.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2138) MFS_1 PF07690.11 gi|344212547|ref|YP_004796867.1| - 1.1e-11 44.0 58.3 4.3e-08 32.2 21.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily SCFA_trans PF02667.9 gi|344212548|ref|YP_004796868.1| - 5.4e-124 414.4 19.3 6.1e-124 414.2 13.4 1.0 1 0 0 1 1 1 1 Short chain fatty acid transporter DcuC PF03606.10 gi|344212548|ref|YP_004796868.1| - 2.8e-05 22.5 9.4 2.8e-05 22.5 6.5 1.8 2 0 0 2 2 2 1 C4-dicarboxylate anaerobic carrier ABG_transport PF03806.8 gi|344212548|ref|YP_004796868.1| - 9.9e-05 20.5 6.5 9.9e-05 20.5 4.5 1.6 2 0 0 2 2 2 1 AbgT putative transporter family 2-Hacid_dh_C PF02826.14 gi|344212549|ref|YP_004796869.1| - 1.3e-54 184.0 0.0 2.6e-54 183.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|344212549|ref|YP_004796869.1| - 1.3e-31 108.8 0.4 1.5e-31 108.6 0.3 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|344212549|ref|YP_004796869.1| - 0.028 14.5 0.2 0.67 10.1 0.0 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Aldolase_2 PF10120.4 gi|344212550|ref|YP_004796870.1| - 4.6e-50 169.3 0.3 8.9e-50 168.3 0.1 1.5 2 0 0 2 2 2 1 Putative aldolase HTH_3 PF01381.17 gi|344212550|ref|YP_004796870.1| - 6.4e-06 25.9 0.0 1.7e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|344212550|ref|YP_004796870.1| - 2e-05 24.6 1.2 0.00043 20.4 0.1 2.9 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|344212550|ref|YP_004796870.1| - 9.7e-05 21.8 0.0 0.00029 20.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|344212550|ref|YP_004796870.1| - 0.00016 20.8 0.0 0.00043 19.5 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|344212550|ref|YP_004796870.1| - 0.0003 20.2 0.1 0.001 18.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|344212550|ref|YP_004796870.1| - 0.0003 20.5 0.0 0.00063 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|344212550|ref|YP_004796870.1| - 0.0041 16.5 0.0 0.01 15.2 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 KorB PF08535.5 gi|344212550|ref|YP_004796870.1| - 0.0083 16.2 0.1 0.026 14.6 0.0 1.8 2 0 0 2 2 2 1 KorB domain HTH_11 PF08279.7 gi|344212550|ref|YP_004796870.1| - 0.0093 15.5 0.0 0.029 14.0 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|344212550|ref|YP_004796870.1| - 0.012 15.2 0.0 0.047 13.3 0.0 2.1 1 0 0 1 1 1 0 MarR family HTH_19 PF12844.2 gi|344212550|ref|YP_004796870.1| - 0.015 15.3 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RepB PF07506.6 gi|344212550|ref|YP_004796870.1| - 0.03 14.1 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_26 PF13443.1 gi|344212550|ref|YP_004796870.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|344212550|ref|YP_004796870.1| - 0.11 11.9 0.0 0.26 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Terminase_5 PF06056.7 gi|344212550|ref|YP_004796870.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TENA_THI-4 PF03070.11 gi|344212551|ref|YP_004796871.1| - 1.7e-47 161.8 1.0 2.1e-47 161.6 0.7 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.11 gi|344212552|ref|YP_004796872.1| - 5.1e-24 85.1 0.0 6.5e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family NADPH_Ox PF08414.5 gi|344212552|ref|YP_004796872.1| - 0.14 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase SSF PF00474.12 gi|344212553|ref|YP_004796873.1| - 3.9e-23 81.7 33.1 6.4e-23 81.0 22.9 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DUF1632 PF07857.7 gi|344212554|ref|YP_004796874.1| - 0.33 10.1 2.6 0.33 10.1 1.8 1.0 1 0 0 1 1 1 0 CEO family (DUF1632) Usp PF00582.21 gi|344212555|ref|YP_004796875.1| - 9.6e-14 51.7 0.0 1.1e-13 51.6 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family Proteasome PF00227.21 gi|344212556|ref|YP_004796876.1| - 2.2e-45 154.2 0.1 2.5e-45 154.0 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.21 gi|344212557|ref|YP_004796877.1| - 9.8e-61 204.3 0.0 1.2e-60 204.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|344212557|ref|YP_004796877.1| - 2.2e-14 52.4 0.1 4.2e-14 51.5 0.1 1.5 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature PTH2 PF01981.11 gi|344212558|ref|YP_004796878.1| - 1.2e-40 137.7 0.0 1.3e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Yip1 PF04893.12 gi|344212559|ref|YP_004796879.1| - 3.2e-27 95.1 9.5 3.9e-27 94.8 6.6 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|344212559|ref|YP_004796879.1| - 0.006 16.2 5.6 0.021 14.4 3.4 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1282) DCD PF06559.6 gi|344212560|ref|YP_004796880.1| - 7.3e-16 57.5 0.1 1.1e-13 50.3 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|344212560|ref|YP_004796880.1| - 4.2e-15 55.3 0.0 6.1e-15 54.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase Aldolase_2 PF10120.4 gi|344212561|ref|YP_004796881.1| - 2.3e-51 173.5 0.1 3.2e-51 173.0 0.1 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|344212561|ref|YP_004796881.1| - 1.3e-07 31.3 0.0 2.5e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|344212561|ref|YP_004796881.1| - 1.2e-06 28.6 1.0 4.2e-06 26.8 0.4 2.3 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|344212561|ref|YP_004796881.1| - 1.5e-05 24.6 0.0 3.1e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|344212561|ref|YP_004796881.1| - 2.1e-05 24.4 0.0 3.8e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|344212561|ref|YP_004796881.1| - 8.2e-05 22.7 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.11 gi|344212561|ref|YP_004796881.1| - 0.00018 20.7 0.0 0.00059 19.0 0.0 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|344212561|ref|YP_004796881.1| - 0.00027 20.2 0.0 0.00066 19.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|344212561|ref|YP_004796881.1| - 0.00037 20.0 0.0 0.0015 18.0 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|344212561|ref|YP_004796881.1| - 0.0007 19.2 0.0 0.0028 17.2 0.0 2.1 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|344212561|ref|YP_004796881.1| - 0.00078 18.9 0.0 0.0024 17.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|344212561|ref|YP_004796881.1| - 0.0027 17.3 0.0 0.0072 15.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|344212561|ref|YP_004796881.1| - 0.003 17.3 1.1 0.065 13.0 0.0 3.5 4 0 0 4 4 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|344212561|ref|YP_004796881.1| - 0.0074 15.7 0.1 0.031 13.7 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_4 PF13613.1 gi|344212561|ref|YP_004796881.1| - 0.013 15.0 0.0 0.035 13.6 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_17 PF12728.2 gi|344212561|ref|YP_004796881.1| - 0.016 15.4 0.0 0.031 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|344212561|ref|YP_004796881.1| - 0.02 14.3 0.1 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Tnp_ISL3 PF13542.1 gi|344212561|ref|YP_004796881.1| - 0.03 13.4 0.1 0.15 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_1 PF00126.22 gi|344212561|ref|YP_004796881.1| - 0.031 14.0 0.0 0.099 12.3 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2481 PF10654.4 gi|344212561|ref|YP_004796881.1| - 0.04 13.6 0.0 0.064 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) HTH_IclR PF09339.5 gi|344212561|ref|YP_004796881.1| - 0.048 13.2 1.7 0.18 11.4 0.0 2.7 3 0 0 3 3 2 0 IclR helix-turn-helix domain KorB PF08535.5 gi|344212561|ref|YP_004796881.1| - 0.073 13.2 0.1 1.2 9.3 0.0 2.7 2 1 0 2 2 2 0 KorB domain Cro PF09048.5 gi|344212561|ref|YP_004796881.1| - 0.084 12.5 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 Cro HTH_Crp_2 PF13545.1 gi|344212561|ref|YP_004796881.1| - 0.099 12.4 0.0 0.33 10.7 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RepB PF07506.6 gi|344212561|ref|YP_004796881.1| - 0.1 12.4 0.1 0.27 11.0 0.0 1.7 2 0 0 2 2 2 0 RepB plasmid partitioning protein DUF1670 PF07900.6 gi|344212561|ref|YP_004796881.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) P22_Cro PF14549.1 gi|344212561|ref|YP_004796881.1| - 0.12 12.0 0.0 0.3 10.8 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Methyltransf_11 PF08241.7 gi|344212562|ref|YP_004796882.1| - 2.3e-14 53.6 0.0 4e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212562|ref|YP_004796882.1| - 1e-12 48.0 0.0 1.7e-12 47.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212562|ref|YP_004796882.1| - 2.9e-12 46.4 0.0 3.3e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344212562|ref|YP_004796882.1| - 3.9e-12 45.7 0.0 5.3e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|344212562|ref|YP_004796882.1| - 1.3e-10 41.8 0.0 2.5e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344212562|ref|YP_004796882.1| - 6e-10 39.4 0.0 9.6e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212562|ref|YP_004796882.1| - 9.7e-09 35.5 0.0 1.7e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|344212562|ref|YP_004796882.1| - 5.1e-07 29.4 0.0 6.3e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|344212562|ref|YP_004796882.1| - 1.9e-06 27.9 1.6 1.9e-06 27.9 1.1 2.0 2 1 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|344212562|ref|YP_004796882.1| - 0.00025 20.1 0.0 0.00037 19.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|344212562|ref|YP_004796882.1| - 0.00056 19.9 0.0 0.00088 19.3 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase GCD14 PF08704.5 gi|344212562|ref|YP_004796882.1| - 0.0048 16.4 0.0 0.0071 15.8 0.0 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|344212562|ref|YP_004796882.1| - 0.0064 15.6 0.0 0.0094 15.0 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.1 gi|344212562|ref|YP_004796882.1| - 0.017 14.8 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|344212562|ref|YP_004796882.1| - 0.027 13.8 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_19 PF04672.7 gi|344212562|ref|YP_004796882.1| - 0.057 12.6 0.5 0.24 10.6 0.2 2.2 1 1 0 1 1 1 0 S-adenosyl methyltransferase ABC2_membrane PF01061.19 gi|344212563|ref|YP_004796883.1| - 2.4e-28 98.7 12.6 3.1e-28 98.3 8.7 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|344212563|ref|YP_004796883.1| - 3e-12 46.2 9.4 3e-12 46.2 6.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|344212563|ref|YP_004796883.1| - 0.00036 19.7 10.3 0.00049 19.3 7.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|344212564|ref|YP_004796884.1| - 2.2e-29 102.4 0.0 3.2e-29 101.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212564|ref|YP_004796884.1| - 2e-14 54.2 0.0 4.5e-10 39.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|344212564|ref|YP_004796884.1| - 1.2e-05 25.7 0.0 2.3e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.1 gi|344212564|ref|YP_004796884.1| - 4.8e-05 23.0 0.4 9.4e-05 22.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344212564|ref|YP_004796884.1| - 0.00056 19.9 0.0 0.0012 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|344212564|ref|YP_004796884.1| - 0.0029 17.1 0.0 0.0063 16.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|344212564|ref|YP_004796884.1| - 0.011 15.4 2.6 0.05 13.3 0.7 2.6 1 1 0 2 2 2 0 Part of AAA domain SbcCD_C PF13558.1 gi|344212564|ref|YP_004796884.1| - 0.014 15.3 0.0 0.034 14.0 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|344212564|ref|YP_004796884.1| - 0.017 14.3 0.0 0.11 11.6 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|344212564|ref|YP_004796884.1| - 0.037 13.4 1.6 0.081 12.3 0.3 2.1 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|344212564|ref|YP_004796884.1| - 0.049 13.0 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|344212564|ref|YP_004796884.1| - 0.077 13.1 0.0 0.18 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|344212564|ref|YP_004796884.1| - 0.077 12.3 0.0 0.42 9.9 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase ATP_bind_1 PF03029.12 gi|344212564|ref|YP_004796884.1| - 0.077 12.5 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|344212564|ref|YP_004796884.1| - 0.11 12.2 0.0 0.6 9.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|344212564|ref|YP_004796884.1| - 0.12 12.6 0.0 0.26 11.6 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|344212564|ref|YP_004796884.1| - 0.13 12.4 0.2 0.3 11.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PqqD PF05402.7 gi|344212564|ref|YP_004796884.1| - 0.18 11.8 2.5 18 5.4 0.1 3.4 3 1 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_10 PF04967.7 gi|344212565|ref|YP_004796885.1| - 7e-18 63.9 0.0 1.1e-17 63.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|344212565|ref|YP_004796885.1| - 1e-05 24.8 0.1 0.00087 18.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|344212565|ref|YP_004796885.1| - 0.0003 20.3 0.1 0.00061 19.3 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.14 gi|344212565|ref|YP_004796885.1| - 0.0013 18.0 0.0 0.0036 16.5 0.0 1.7 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|344212565|ref|YP_004796885.1| - 0.0016 17.9 0.0 0.005 16.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344212565|ref|YP_004796885.1| - 0.0028 16.9 0.0 0.0064 15.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|344212565|ref|YP_004796885.1| - 0.0091 15.6 0.1 0.023 14.3 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344212565|ref|YP_004796885.1| - 0.011 15.5 0.2 0.034 13.9 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain LacI PF00356.16 gi|344212565|ref|YP_004796885.1| - 0.031 13.9 0.2 4.9 6.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_29 PF13551.1 gi|344212565|ref|YP_004796885.1| - 0.039 14.1 0.3 0.32 11.1 0.0 2.3 2 1 1 3 3 3 0 Winged helix-turn helix HTH_24 PF13412.1 gi|344212565|ref|YP_004796885.1| - 0.089 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FtsJ PF01728.14 gi|344212568|ref|YP_004796888.1| - 7.2e-05 22.8 0.0 8.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_11 PF08241.7 gi|344212568|ref|YP_004796888.1| - 0.00022 21.6 0.1 0.0037 17.7 0.1 2.6 1 1 0 1 1 1 1 Methyltransferase domain WND PF07861.6 gi|344212568|ref|YP_004796888.1| - 0.0031 16.5 0.2 0.0057 15.7 0.1 1.4 2 0 0 2 2 2 1 WisP family N-Terminal Region Methyltransf_25 PF13649.1 gi|344212568|ref|YP_004796888.1| - 0.0039 17.5 0.1 0.0099 16.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain PBP-Tp47_c PF14888.1 gi|344212568|ref|YP_004796888.1| - 0.06 12.9 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain C Methyltransf_18 PF12847.2 gi|344212568|ref|YP_004796888.1| - 0.073 13.6 0.1 0.21 12.1 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain Thi4 PF01946.12 gi|344212569|ref|YP_004796889.1| - 2.3e-60 203.5 0.7 4.9e-58 195.9 0.5 2.2 1 1 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|344212569|ref|YP_004796889.1| - 8.1e-12 44.9 0.4 1.5e-11 44.0 0.3 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|344212569|ref|YP_004796889.1| - 9.4e-12 44.4 1.6 1.8e-07 30.4 0.2 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344212569|ref|YP_004796889.1| - 3.5e-11 42.5 1.2 2.5e-08 33.1 0.4 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|344212569|ref|YP_004796889.1| - 1.2e-10 40.9 0.1 2.2e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|344212569|ref|YP_004796889.1| - 1.8e-09 36.5 0.0 2.5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|344212569|ref|YP_004796889.1| - 6.6e-09 35.6 0.3 2.8e-08 33.6 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|344212569|ref|YP_004796889.1| - 8.6e-07 29.2 0.0 1.3e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|344212569|ref|YP_004796889.1| - 1.7e-06 28.1 0.1 2.1e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|344212569|ref|YP_004796889.1| - 5.3e-06 25.3 0.3 0.0011 17.6 0.2 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|344212569|ref|YP_004796889.1| - 1.1e-05 25.2 0.5 4e-05 23.4 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|344212569|ref|YP_004796889.1| - 1.6e-05 24.0 0.2 0.0016 17.4 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|344212569|ref|YP_004796889.1| - 1.9e-05 24.9 1.3 3.1e-05 24.3 0.2 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|344212569|ref|YP_004796889.1| - 0.0004 20.6 0.0 0.00091 19.4 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding Amino_oxidase PF01593.19 gi|344212569|ref|YP_004796889.1| - 0.00059 19.0 0.0 0.0016 17.6 0.0 1.7 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|344212569|ref|YP_004796889.1| - 0.00067 18.6 0.3 0.0011 17.9 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A YjeF_N PF03853.10 gi|344212569|ref|YP_004796889.1| - 0.02 14.5 0.1 0.53 9.8 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus Shikimate_DH PF01488.15 gi|344212569|ref|YP_004796889.1| - 0.023 14.7 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|344212569|ref|YP_004796889.1| - 0.068 13.1 1.3 0.084 12.8 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain Gate PF07670.9 gi|344212570|ref|YP_004796890.1| - 4.5e-09 36.1 25.8 8.3e-09 35.3 2.9 3.6 3 1 0 3 3 3 2 Nucleoside recognition HTH_10 PF04967.7 gi|344212571|ref|YP_004796891.1| - 2.6e-18 65.3 0.3 6.8e-18 64.0 0.2 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|344212571|ref|YP_004796891.1| - 4.5e-08 32.4 0.6 6.5e-07 28.7 0.4 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|344212571|ref|YP_004796891.1| - 0.00074 18.7 1.3 0.001 18.3 0.2 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_29 PF13551.1 gi|344212571|ref|YP_004796891.1| - 0.02 15.0 0.1 0.13 12.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix GerE PF00196.14 gi|344212571|ref|YP_004796891.1| - 0.028 13.7 0.0 0.28 10.5 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_23 PF13384.1 gi|344212571|ref|YP_004796891.1| - 0.096 12.3 0.0 0.74 9.5 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain DUF134 PF02001.11 gi|344212571|ref|YP_004796891.1| - 0.11 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_24 PF13412.1 gi|344212571|ref|YP_004796891.1| - 0.14 11.6 0.1 0.84 9.0 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Coat_F PF07875.7 gi|344212571|ref|YP_004796891.1| - 0.14 12.3 0.0 0.49 10.5 0.0 2.0 2 0 0 2 2 2 0 Coat F domain Urocanase PF01175.13 gi|344212572|ref|YP_004796892.1| - 1.2e-258 858.6 0.1 1.5e-258 858.2 0.1 1.0 1 0 0 1 1 1 1 Urocanase Arginase PF00491.16 gi|344212573|ref|YP_004796893.1| - 3.6e-60 203.6 2.9 4.1e-60 203.4 2.0 1.0 1 0 0 1 1 1 1 Arginase family GGDN PF05165.7 gi|344212573|ref|YP_004796893.1| - 0.019 13.9 0.0 0.038 13.0 0.0 1.5 1 0 0 1 1 1 0 GGDN family Amidohydro_4 PF13147.1 gi|344212574|ref|YP_004796894.1| - 1.4e-16 61.3 20.0 5.8e-16 59.3 13.9 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|344212574|ref|YP_004796894.1| - 3.1e-14 52.5 1.2 1.3e-13 50.5 0.3 2.6 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|344212574|ref|YP_004796894.1| - 1.3e-10 41.4 2.6 6.4e-10 39.2 1.8 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.6 gi|344212574|ref|YP_004796894.1| - 0.00027 20.2 13.5 15 4.6 9.4 2.6 1 1 0 1 1 1 1 Amidohydrolase family Lyase_aromatic PF00221.14 gi|344212575|ref|YP_004796895.1| - 6.6e-179 595.2 8.6 7.6e-179 595.0 6.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase AAA PF00004.24 gi|344212576|ref|YP_004796896.1| - 6.4e-81 269.0 0.0 1.2e-39 135.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|344212576|ref|YP_004796896.1| - 4.6e-11 42.2 0.0 9e-05 21.6 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|344212576|ref|YP_004796896.1| - 1.5e-10 40.9 0.2 8.3e-05 22.3 0.0 3.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|344212576|ref|YP_004796896.1| - 3.1e-10 40.2 0.0 0.00026 20.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|344212576|ref|YP_004796896.1| - 6.6e-10 39.8 0.1 0.0012 19.6 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|344212576|ref|YP_004796896.1| - 2.1e-09 37.3 0.0 0.0025 17.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|344212576|ref|YP_004796896.1| - 7e-09 35.7 0.2 0.01 15.7 0.0 3.9 5 0 0 5 5 3 2 AAA domain AAA_16 PF13191.1 gi|344212576|ref|YP_004796896.1| - 8.3e-09 35.6 6.7 0.016 15.2 0.2 4.8 2 2 2 4 4 4 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|344212576|ref|YP_004796896.1| - 4.3e-08 32.7 3.3 0.0018 17.7 0.1 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.1 gi|344212576|ref|YP_004796896.1| - 5e-08 33.1 0.5 0.024 14.7 0.0 4.0 2 2 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|344212576|ref|YP_004796896.1| - 8.7e-08 31.9 0.8 0.58 9.7 0.0 4.3 2 2 2 4 4 4 3 NACHT domain AAA_25 PF13481.1 gi|344212576|ref|YP_004796896.1| - 1.2e-07 31.3 5.6 0.23 10.8 0.0 4.4 2 2 2 4 4 4 3 AAA domain RNA_helicase PF00910.17 gi|344212576|ref|YP_004796896.1| - 2.8e-07 30.6 0.0 0.021 15.0 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Viral_helicase1 PF01443.13 gi|344212576|ref|YP_004796896.1| - 1.7e-06 27.7 0.0 0.048 13.1 0.0 2.3 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|344212576|ref|YP_004796896.1| - 2.1e-06 26.9 0.3 0.031 13.3 0.0 2.7 3 0 0 3 3 2 2 Zeta toxin AAA_19 PF13245.1 gi|344212576|ref|YP_004796896.1| - 2.6e-06 27.0 1.9 0.034 13.8 0.1 3.4 3 0 0 3 3 2 2 Part of AAA domain AAA_28 PF13521.1 gi|344212576|ref|YP_004796896.1| - 5.1e-06 26.5 0.6 0.15 11.9 0.0 3.6 4 0 0 4 4 2 2 AAA domain AAA_18 PF13238.1 gi|344212576|ref|YP_004796896.1| - 6.4e-06 26.5 0.0 0.18 12.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|344212576|ref|YP_004796896.1| - 2.1e-05 24.6 0.1 0.36 10.8 0.0 2.8 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|344212576|ref|YP_004796896.1| - 5.3e-05 22.4 0.2 0.16 11.0 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|344212576|ref|YP_004796896.1| - 5.9e-05 21.9 0.0 0.34 9.5 0.0 2.6 2 1 0 2 2 2 2 TIP49 C-terminus Bac_DnaA PF00308.13 gi|344212576|ref|YP_004796896.1| - 6.3e-05 22.7 0.0 0.1 12.2 0.0 2.9 2 2 0 2 2 2 2 Bacterial dnaA protein ABC_tran PF00005.22 gi|344212576|ref|YP_004796896.1| - 9.1e-05 22.7 0.0 0.52 10.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_3 PF07726.6 gi|344212576|ref|YP_004796896.1| - 0.0003 20.3 0.0 0.59 9.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|344212576|ref|YP_004796896.1| - 0.0017 18.2 0.0 1.7 8.5 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase AAA_11 PF13086.1 gi|344212576|ref|YP_004796896.1| - 0.0018 17.8 0.0 0.91 9.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|344212576|ref|YP_004796896.1| - 0.0036 16.9 0.1 0.52 9.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|344212576|ref|YP_004796896.1| - 0.005 15.5 0.0 2.3 6.7 0.0 2.5 2 1 1 3 3 3 1 Rad17 cell cycle checkpoint protein PhoH PF02562.11 gi|344212576|ref|YP_004796896.1| - 0.03 13.5 0.9 5.3 6.2 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Arch_ATPase PF01637.13 gi|344212576|ref|YP_004796896.1| - 0.033 13.8 0.1 2.1 7.9 0.0 3.1 2 2 1 4 4 4 0 Archaeal ATPase Parvo_NS1 PF01057.12 gi|344212576|ref|YP_004796896.1| - 0.037 12.8 0.0 5.8 5.7 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 Guanylate_kin PF00625.16 gi|344212576|ref|YP_004796896.1| - 0.047 13.1 0.0 11 5.4 0.0 3.4 3 1 1 4 4 4 0 Guanylate kinase Sigma54_activat PF00158.21 gi|344212576|ref|YP_004796896.1| - 0.052 13.0 0.0 11 5.4 0.0 3.0 3 0 0 3 3 3 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|344212576|ref|YP_004796896.1| - 0.066 12.1 0.0 5.6 5.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) UPF0079 PF02367.12 gi|344212576|ref|YP_004796896.1| - 0.084 12.5 0.1 6.9 6.3 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 KaiC PF06745.8 gi|344212576|ref|YP_004796896.1| - 0.25 10.4 0.2 27 3.7 0.0 2.7 2 1 1 3 3 3 0 KaiC KTI12 PF08433.5 gi|344212576|ref|YP_004796896.1| - 0.26 10.4 0.0 20 4.2 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 NB-ARC PF00931.17 gi|344212576|ref|YP_004796896.1| - 0.38 9.5 0.2 21 3.8 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain DUF137 PF02006.11 gi|344212577|ref|YP_004796897.1| - 5.1e-70 234.4 1.6 6.3e-70 234.1 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|344212577|ref|YP_004796897.1| - 0.0096 15.1 0.2 0.016 14.4 0.1 1.3 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) PhzC-PhzF PF02567.11 gi|344212578|ref|YP_004796898.1| - 2.5e-37 128.6 2.1 3e-37 128.3 1.5 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|344212578|ref|YP_004796898.1| - 0.0001 22.1 0.6 0.00041 20.2 0.0 2.1 2 0 0 2 2 2 1 Diaminopimelate epimerase PPDK_N PF01326.14 gi|344212579|ref|YP_004796899.1| - 2.5e-105 352.1 2.6 4.7e-105 351.2 1.8 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|344212579|ref|YP_004796899.1| - 3.2e-78 262.6 0.0 4.7e-78 262.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|344212579|ref|YP_004796899.1| - 2.2e-30 104.0 2.0 6.1e-30 102.6 0.8 2.2 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain KaiC PF06745.8 gi|344212580|ref|YP_004796900.1| - 3.7e-06 26.2 0.4 0.019 14.0 0.2 2.3 2 1 0 2 2 2 2 KaiC PFL PF02901.10 gi|344212580|ref|YP_004796900.1| - 0.17 10.2 0.0 0.27 9.5 0.0 1.2 1 0 0 1 1 1 0 Pyruvate formate lyase Pyridoxal_deC PF00282.14 gi|344212581|ref|YP_004796901.1| - 6.4e-25 87.3 0.0 1.1e-24 86.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|344212581|ref|YP_004796901.1| - 6.9e-09 34.9 0.0 1e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V SNARE_assoc PF09335.6 gi|344212582|ref|YP_004796902.1| - 7.7e-12 45.5 2.0 7.7e-12 45.5 1.4 1.8 1 1 1 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1g PF09334.6 gi|344212583|ref|YP_004796903.1| - 7.6e-129 429.7 0.0 2.3e-127 424.9 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|344212583|ref|YP_004796903.1| - 1.5e-22 79.2 0.0 2.3e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|344212583|ref|YP_004796903.1| - 3.3e-09 35.3 0.0 2.1e-06 26.0 0.1 2.8 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|344212583|ref|YP_004796903.1| - 7.7e-08 32.2 0.0 1.3e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|344212583|ref|YP_004796903.1| - 5.3e-06 25.7 0.0 0.00061 19.0 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1d PF00750.14 gi|344212583|ref|YP_004796903.1| - 0.022 13.5 0.0 0.052 12.3 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (R) DUF3040 PF11239.3 gi|344212584|ref|YP_004796904.1| - 0.17 11.9 1.0 0.25 11.4 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) NfeD PF01957.13 gi|344212585|ref|YP_004796905.1| - 2.6e-16 60.0 0.6 3.1e-16 59.7 0.4 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Ins145_P3_rec PF08709.6 gi|344212585|ref|YP_004796905.1| - 0.15 11.0 0.0 0.21 10.6 0.0 1.2 1 0 0 1 1 1 0 Inositol 1,4,5-trisphosphate/ryanodine receptor Band_7 PF01145.20 gi|344212586|ref|YP_004796906.1| - 4.5e-41 140.7 3.0 1e-40 139.5 2.1 1.6 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|344212586|ref|YP_004796906.1| - 0.0018 17.7 0.1 0.003 17.0 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family SNN_transmemb PF09049.5 gi|344212586|ref|YP_004796906.1| - 1.2 8.9 3.8 2.9 7.6 2.7 1.6 1 0 0 1 1 1 0 Stannin transmembrane MarR_2 PF12802.2 gi|344212587|ref|YP_004796907.1| - 2.5e-10 39.8 0.4 2.8e-09 36.4 0.1 2.5 2 1 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|344212587|ref|YP_004796907.1| - 9.9e-10 38.0 1.3 3e-07 30.1 0.2 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|344212587|ref|YP_004796907.1| - 3e-08 33.2 0.0 9.7e-06 25.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344212587|ref|YP_004796907.1| - 4.9e-08 32.5 0.1 2e-05 24.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|344212587|ref|YP_004796907.1| - 5e-08 32.5 0.0 3.4e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|344212587|ref|YP_004796907.1| - 6.5e-08 32.1 0.0 1.2e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|344212587|ref|YP_004796907.1| - 1.2e-06 28.4 0.0 0.062 13.3 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|344212587|ref|YP_004796907.1| - 1.9e-05 24.1 4.2 0.00057 19.4 0.1 2.9 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344212587|ref|YP_004796907.1| - 3.4e-05 23.1 0.0 0.00035 19.8 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|344212587|ref|YP_004796907.1| - 0.00013 21.3 0.1 0.0015 17.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|344212587|ref|YP_004796907.1| - 0.00083 19.1 0.0 0.0024 17.6 0.0 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|344212587|ref|YP_004796907.1| - 0.0013 18.5 0.0 0.0044 16.9 0.0 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|344212587|ref|YP_004796907.1| - 0.0043 17.1 0.0 0.021 14.9 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_23 PF13384.1 gi|344212587|ref|YP_004796907.1| - 0.0058 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_41 PF14502.1 gi|344212587|ref|YP_004796907.1| - 0.01 15.4 0.0 5.6 6.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|344212587|ref|YP_004796907.1| - 0.015 15.4 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|344212587|ref|YP_004796907.1| - 0.051 13.4 0.0 0.24 11.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix DUF2250 PF10007.4 gi|344212587|ref|YP_004796907.1| - 0.061 13.2 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.7 gi|344212587|ref|YP_004796907.1| - 0.086 12.4 0.1 0.26 10.8 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain HTH_CodY PF08222.6 gi|344212587|ref|YP_004796907.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|344212587|ref|YP_004796907.1| - 0.11 12.8 0.1 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|344212587|ref|YP_004796907.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PAS_3 PF08447.6 gi|344212588|ref|YP_004796908.1| - 6.1e-22 77.5 2.1 4.9e-13 48.9 0.1 2.7 3 0 0 3 3 2 2 PAS fold PAS_9 PF13426.1 gi|344212588|ref|YP_004796908.1| - 1.5e-19 70.2 1.4 2.5e-13 50.3 0.1 2.6 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|344212588|ref|YP_004796908.1| - 7.7e-18 64.5 0.0 1.9e-17 63.2 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344212588|ref|YP_004796908.1| - 1e-17 63.8 0.1 3.6e-17 62.0 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344212588|ref|YP_004796908.1| - 8.5e-16 57.9 1.3 1.5e-11 44.2 0.1 2.8 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|344212588|ref|YP_004796908.1| - 9.9e-11 41.4 0.9 2.8e-10 40.0 0.6 1.9 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|344212588|ref|YP_004796908.1| - 7.9e-09 35.2 0.2 1.4e-06 28.0 0.1 2.7 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|344212588|ref|YP_004796908.1| - 3.3e-05 23.5 0.0 0.00011 21.9 0.0 1.9 1 0 0 1 1 1 1 PAS domain OKR_DC_1_N PF03709.10 gi|344212588|ref|YP_004796908.1| - 0.0026 17.8 0.0 0.0081 16.2 0.0 1.9 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.1 gi|344212588|ref|YP_004796908.1| - 0.0047 16.7 0.2 0.017 14.9 0.1 1.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_11 PF14598.1 gi|344212588|ref|YP_004796908.1| - 0.0095 15.8 0.0 6.7 6.7 0.0 2.7 2 1 0 2 2 2 2 PAS domain HATPase_c_3 PF13589.1 gi|344212588|ref|YP_004796908.1| - 0.018 14.7 0.0 0.04 13.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LexA_DNA_bind PF01726.11 gi|344212589|ref|YP_004796909.1| - 0.0029 17.1 0.0 0.0042 16.6 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.1 gi|344212589|ref|YP_004796909.1| - 0.008 15.5 0.5 0.53 9.7 0.1 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_6 PF01418.12 gi|344212589|ref|YP_004796909.1| - 0.14 11.9 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family TRAM PF01938.15 gi|344212590|ref|YP_004796910.1| - 1.5e-14 53.5 2.5 2.7e-14 52.6 1.8 1.5 1 0 0 1 1 1 1 TRAM domain CxxCxxCC PF03692.10 gi|344212591|ref|YP_004796911.1| - 6.5e-12 45.7 0.2 2.1e-11 44.1 0.2 1.8 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|344212591|ref|YP_004796911.1| - 0.022 14.8 0.4 0.022 14.8 0.3 1.9 2 0 0 2 2 2 0 High potential iron-sulfur protein Lactamase_B PF00753.22 gi|344212592|ref|YP_004796912.1| - 2.1e-15 56.8 9.2 3.1e-15 56.3 6.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|344212592|ref|YP_004796912.1| - 0.00078 19.0 0.2 0.0012 18.4 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Gluconate_2-dh3 PF13618.1 gi|344212592|ref|YP_004796912.1| - 0.0067 16.5 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 PQQ_3 PF13570.1 gi|344212592|ref|YP_004796912.1| - 1.1 9.6 4.2 5.2 7.4 2.9 2.3 1 1 0 1 1 1 0 PQQ-like domain HTH_24 PF13412.1 gi|344212593|ref|YP_004796913.1| - 7.2e-07 28.4 0.0 1.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344212593|ref|YP_004796913.1| - 1.7e-05 24.4 0.1 2.3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344212593|ref|YP_004796913.1| - 6.6e-05 22.6 0.1 9.4e-05 22.1 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|344212593|ref|YP_004796913.1| - 7.2e-05 23.0 0.0 9.9e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|344212593|ref|YP_004796913.1| - 0.0005 19.4 0.0 0.00084 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|344212593|ref|YP_004796913.1| - 0.00086 18.9 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344212593|ref|YP_004796913.1| - 0.0011 18.5 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|344212593|ref|YP_004796913.1| - 0.002 17.8 0.1 0.0085 15.7 0.1 2.0 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TFIIE_alpha PF02002.12 gi|344212593|ref|YP_004796913.1| - 0.0021 17.5 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_36 PF13730.1 gi|344212593|ref|YP_004796913.1| - 0.0031 17.6 0.0 0.0047 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|344212593|ref|YP_004796913.1| - 0.0075 16.3 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.15 gi|344212593|ref|YP_004796913.1| - 0.018 14.7 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|344212593|ref|YP_004796913.1| - 0.018 14.5 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Methyltransf_11 PF08241.7 gi|344212594|ref|YP_004796914.1| - 1e-21 77.1 0.0 1.5e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212594|ref|YP_004796914.1| - 1.2e-17 63.8 0.0 1.7e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212594|ref|YP_004796914.1| - 1.1e-16 60.9 0.0 1.5e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344212594|ref|YP_004796914.1| - 1.1e-15 58.1 0.0 1.7e-15 57.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212594|ref|YP_004796914.1| - 3.3e-15 56.2 0.0 5.2e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344212594|ref|YP_004796914.1| - 1.3e-14 53.9 0.0 1.8e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|344212594|ref|YP_004796914.1| - 7.1e-13 48.8 0.0 1e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212594|ref|YP_004796914.1| - 9.5e-12 44.9 0.0 1.4e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|344212594|ref|YP_004796914.1| - 1.3e-07 31.3 0.0 3.4e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|344212594|ref|YP_004796914.1| - 4e-07 29.5 0.0 5.6e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|344212594|ref|YP_004796914.1| - 1.2e-05 24.2 0.0 1.6e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|344212594|ref|YP_004796914.1| - 0.00013 21.0 0.0 0.00017 20.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|344212594|ref|YP_004796914.1| - 0.00028 20.3 0.0 0.00039 19.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|344212594|ref|YP_004796914.1| - 0.00095 18.3 0.0 0.0012 17.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|344212594|ref|YP_004796914.1| - 0.0011 18.5 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase tRNA_U5-meth_tr PF05958.6 gi|344212594|ref|YP_004796914.1| - 0.0014 17.4 0.0 0.0026 16.5 0.0 1.3 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Methyltransf_20 PF12147.3 gi|344212594|ref|YP_004796914.1| - 0.0016 17.3 0.0 0.0037 16.1 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase NodS PF05401.6 gi|344212594|ref|YP_004796914.1| - 0.0033 16.8 0.0 0.0041 16.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|344212594|ref|YP_004796914.1| - 0.0037 16.4 0.0 0.0048 16.0 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_3 PF01596.12 gi|344212594|ref|YP_004796914.1| - 0.0086 15.1 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_4 PF02390.12 gi|344212594|ref|YP_004796914.1| - 0.015 14.3 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.6 gi|344212594|ref|YP_004796914.1| - 0.09 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) DUF938 PF06080.7 gi|344212594|ref|YP_004796914.1| - 0.12 11.8 0.0 0.46 10.0 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF938) Glycos_transf_2 PF00535.21 gi|344212595|ref|YP_004796915.1| - 1.1e-13 51.2 0.0 4.6e-13 49.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344212595|ref|YP_004796915.1| - 7.7e-05 22.5 2.5 0.0002 21.2 1.2 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Amidohydro_2 PF04909.9 gi|344212596|ref|YP_004796916.1| - 1.9e-22 80.1 2.9 6.6e-22 78.3 2.0 1.7 1 1 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.19 gi|344212597|ref|YP_004796917.1| - 2.5e-137 458.4 10.0 2.8e-137 458.2 6.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF371 PF04027.8 gi|344212598|ref|YP_004796918.1| - 3.1e-55 185.3 1.1 3.5e-55 185.2 0.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) amfpi-1 PF12190.3 gi|344212599|ref|YP_004796919.1| - 0.038 14.4 0.7 0.044 14.2 0.5 1.1 1 0 0 1 1 1 0 Fungal protease inhibitor PRP4 PF08799.6 gi|344212599|ref|YP_004796919.1| - 0.18 11.0 0.4 0.29 10.4 0.3 1.4 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like Glyco_hydro_2_N PF02837.13 gi|344212600|ref|YP_004796920.1| - 1.6e-06 27.7 0.0 4.1e-06 26.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|344212600|ref|YP_004796920.1| - 4.2e-06 27.1 0.1 1e-05 25.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF4249 PF14054.1 gi|344212600|ref|YP_004796920.1| - 0.13 11.6 0.3 0.51 9.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4249) YqzH PF14164.1 gi|344212601|ref|YP_004796921.1| - 4.1 7.3 8.6 1.1 9.2 1.6 3.1 2 0 0 2 2 2 0 YqzH-like protein DUF1664 PF07889.7 gi|344212601|ref|YP_004796921.1| - 5.7 6.7 30.2 1.7 8.4 4.3 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Laminin_II PF06009.7 gi|344212601|ref|YP_004796921.1| - 6.3 6.5 36.8 0.36 10.5 8.3 3.7 1 1 3 4 4 4 0 Laminin Domain II LysE PF01810.13 gi|344212602|ref|YP_004796922.1| - 6e-29 100.6 9.1 4.1e-28 97.9 6.3 1.9 1 1 0 1 1 1 1 LysE type translocator HD PF01966.17 gi|344212603|ref|YP_004796923.1| - 4.3e-18 65.4 3.1 4.6e-18 65.4 0.8 1.9 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|344212603|ref|YP_004796923.1| - 0.011 15.4 0.1 0.028 14.1 0.1 1.6 1 0 0 1 1 1 0 HD domain XylR_N PF06505.6 gi|344212603|ref|YP_004796923.1| - 0.077 12.4 0.0 0.26 10.7 0.0 1.8 2 0 0 2 2 2 0 Activator of aromatic catabolism PAP2 PF01569.16 gi|344212604|ref|YP_004796924.1| - 0.11 12.1 0.4 0.14 11.8 0.3 1.1 1 0 0 1 1 1 0 PAP2 superfamily Acetyltransf_10 PF13673.1 gi|344212605|ref|YP_004796925.1| - 1.7e-11 44.2 0.0 2.4e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344212605|ref|YP_004796925.1| - 7.7e-11 41.8 0.0 2e-10 40.5 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344212605|ref|YP_004796925.1| - 6.3e-08 32.6 0.0 1.4e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344212605|ref|YP_004796925.1| - 3.4e-06 27.0 0.0 4.8e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344212605|ref|YP_004796925.1| - 5.7e-05 22.9 0.0 0.00026 20.8 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344212605|ref|YP_004796925.1| - 0.00096 19.0 0.0 0.0036 17.2 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344212605|ref|YP_004796925.1| - 0.0028 17.3 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|344212605|ref|YP_004796925.1| - 0.015 15.2 0.0 0.027 14.4 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Zn-ribbon_8 PF09723.5 gi|344212605|ref|YP_004796925.1| - 0.016 15.1 1.0 0.025 14.4 0.7 1.3 1 0 0 1 1 1 0 Zinc ribbon domain WW PF00397.21 gi|344212605|ref|YP_004796925.1| - 0.062 13.1 0.5 0.23 11.3 0.1 2.2 2 0 0 2 2 2 0 WW domain Acetyltransf_CG PF14542.1 gi|344212605|ref|YP_004796925.1| - 0.07 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DNA_RNApol_7kD PF03604.8 gi|344212605|ref|YP_004796925.1| - 0.56 9.7 2.6 0.93 9.0 1.8 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Fe_dep_repress PF01325.14 gi|344212606|ref|YP_004796926.1| - 1.7e-16 59.9 0.0 2.6e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|344212606|ref|YP_004796926.1| - 6.1e-11 41.8 0.0 9.8e-11 41.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|344212606|ref|YP_004796926.1| - 1.4e-07 31.7 0.0 3.4e-07 30.4 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|344212606|ref|YP_004796926.1| - 8.8e-05 22.1 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|344212606|ref|YP_004796926.1| - 0.00033 20.3 0.0 0.0011 18.6 0.0 1.9 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|344212606|ref|YP_004796926.1| - 0.00055 19.2 0.0 0.00099 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|344212606|ref|YP_004796926.1| - 0.00089 18.9 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|344212606|ref|YP_004796926.1| - 0.001 19.1 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.17 gi|344212606|ref|YP_004796926.1| - 0.003 17.2 0.0 0.0051 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344212606|ref|YP_004796926.1| - 0.0088 15.8 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344212606|ref|YP_004796926.1| - 0.016 14.8 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344212606|ref|YP_004796926.1| - 0.027 13.9 0.0 0.059 12.9 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_13 PF11972.3 gi|344212606|ref|YP_004796926.1| - 0.1 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain FeoC PF09012.5 gi|344212606|ref|YP_004796926.1| - 0.1 12.2 0.0 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 FeoC like transcriptional regulator Ins_allergen_rp PF06757.8 gi|344212607|ref|YP_004796927.1| - 0.022 14.2 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification Exonuc_VII_S PF02609.11 gi|344212607|ref|YP_004796927.1| - 0.076 12.7 0.4 0.27 11.0 0.3 2.0 1 0 0 1 1 1 0 Exonuclease VII small subunit FAM101 PF15068.1 gi|344212607|ref|YP_004796927.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 FAM101 family Fes1 PF08609.5 gi|344212607|ref|YP_004796927.1| - 0.43 11.0 2.5 0.57 10.6 0.3 2.0 2 0 0 2 2 2 0 Nucleotide exchange factor Fes1 DUF4226 PF10774.4 gi|344212607|ref|YP_004796927.1| - 0.61 10.1 4.6 0.72 9.9 1.9 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4226) UPF0051 PF01458.12 gi|344212608|ref|YP_004796928.1| - 2e-66 223.7 1.1 2.5e-66 223.4 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|344212609|ref|YP_004796929.1| - 1.8e-70 237.0 0.3 2.4e-70 236.5 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|344212610|ref|YP_004796930.1| - 5.3e-15 55.9 0.1 2.6e-14 53.6 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|344212610|ref|YP_004796930.1| - 4.4e-05 24.2 0.5 0.00019 22.2 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|344212610|ref|YP_004796930.1| - 4.4e-05 23.5 0.4 0.002 18.1 0.3 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344212610|ref|YP_004796930.1| - 6.2e-05 22.3 3.6 0.041 13.1 0.5 2.2 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|344212610|ref|YP_004796930.1| - 0.00011 22.3 0.1 0.12 12.6 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|344212610|ref|YP_004796930.1| - 0.00086 19.6 0.3 0.048 13.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|344212610|ref|YP_004796930.1| - 0.0017 17.8 0.1 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|344212610|ref|YP_004796930.1| - 0.0042 16.8 0.4 3 7.5 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|344212610|ref|YP_004796930.1| - 0.0088 16.1 0.1 0.44 10.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|344212610|ref|YP_004796930.1| - 0.023 14.5 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|344212610|ref|YP_004796930.1| - 0.048 13.6 0.3 0.63 9.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|344212610|ref|YP_004796930.1| - 0.05 13.9 2.1 0.45 10.8 1.6 2.8 1 1 1 2 2 2 0 AAA domain MutS_V PF00488.16 gi|344212610|ref|YP_004796930.1| - 0.059 12.7 0.0 1.1 8.6 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_25 PF13481.1 gi|344212610|ref|YP_004796930.1| - 0.076 12.4 0.0 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|344212610|ref|YP_004796930.1| - 0.084 11.3 0.0 0.15 10.5 0.0 1.3 1 1 0 1 1 1 0 AAA domain SKI PF01202.17 gi|344212610|ref|YP_004796930.1| - 0.085 12.7 0.0 0.21 11.4 0.0 1.7 1 0 0 1 1 1 0 Shikimate kinase DNA_pol_B PF00136.16 gi|344212611|ref|YP_004796931.1| - 6.6e-62 209.8 0.0 2.9e-61 207.7 0.0 1.8 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|344212611|ref|YP_004796931.1| - 3.4e-35 121.4 0.0 5.4e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DUF4366 PF14283.1 gi|344212613|ref|YP_004796933.1| - 0.02 14.2 0.0 0.034 13.5 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4366) AAA_23 PF13476.1 gi|344212615|ref|YP_004796935.1| - 5.6e-17 62.7 90.7 9.4e+02 -0.1 62.9 6.0 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|344212615|ref|YP_004796935.1| - 4.5e-10 39.9 3.9 2e-05 24.6 0.1 3.1 3 0 0 3 3 3 2 AAA domain AAA_13 PF13166.1 gi|344212615|ref|YP_004796935.1| - 1.5e-09 36.9 78.4 0.00057 18.4 15.2 5.5 2 1 4 6 6 6 6 AAA domain AAA_15 PF13175.1 gi|344212615|ref|YP_004796935.1| - 2.1e-08 33.6 0.0 0.00013 21.2 0.0 3.7 3 2 0 3 3 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|344212615|ref|YP_004796935.1| - 1.5e-07 30.7 0.0 2.7e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TMF_TATA_bd PF12325.3 gi|344212615|ref|YP_004796935.1| - 1.3e-05 24.9 5.3 1.3e-05 24.9 3.7 9.2 3 2 6 9 9 8 2 TATA element modulatory factor 1 TATA binding CENP-F_leu_zip PF10473.4 gi|344212615|ref|YP_004796935.1| - 6.7e-05 22.7 21.5 6.7e-05 22.7 14.9 6.6 3 2 3 7 7 6 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2353 PF09789.4 gi|344212615|ref|YP_004796935.1| - 8.5e-05 21.9 15.1 8.5e-05 21.9 10.5 5.0 2 2 3 5 5 4 1 Uncharacterized coiled-coil protein (DUF2353) SbcCD_C PF13558.1 gi|344212615|ref|YP_004796935.1| - 0.00036 20.3 0.0 0.0011 18.8 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|344212615|ref|YP_004796935.1| - 0.0006 19.1 67.1 0.041 13.1 46.5 2.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain zf-C4H2 PF10146.4 gi|344212615|ref|YP_004796935.1| - 0.0011 18.9 21.3 0.0011 18.9 14.8 5.0 3 2 2 5 5 4 1 Zinc finger-containing protein IncA PF04156.9 gi|344212615|ref|YP_004796935.1| - 0.0014 18.2 135.2 0.059 12.9 16.9 6.0 1 1 6 7 7 7 4 IncA protein MukB PF04310.7 gi|344212615|ref|YP_004796935.1| - 0.075 12.3 0.2 0.46 9.7 0.0 2.4 2 0 0 2 2 2 0 MukB N-terminal Spc7 PF08317.6 gi|344212615|ref|YP_004796935.1| - 0.076 11.6 105.0 0.16 10.6 13.6 5.6 2 2 3 5 5 5 0 Spc7 kinetochore protein AAA_27 PF13514.1 gi|344212615|ref|YP_004796935.1| - 0.094 10.3 111.2 0.24 9.0 0.0 3.7 1 1 1 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|344212615|ref|YP_004796935.1| - 0.18 12.0 0.0 0.18 12.0 0.0 5.8 2 1 0 2 2 1 0 ABC transporter Reo_sigmaC PF04582.7 gi|344212615|ref|YP_004796935.1| - 0.9 8.6 35.1 0.56 9.3 5.0 5.0 1 1 3 6 6 6 0 Reovirus sigma C capsid protein CSS-motif PF12792.2 gi|344212615|ref|YP_004796935.1| - 4.8 6.4 5.8 6 6.1 0.3 3.2 3 0 0 3 3 3 0 CSS motif domain associated with EAL Metallophos_2 PF12850.2 gi|344212616|ref|YP_004796936.1| - 7.2e-15 55.1 0.3 1.4e-14 54.2 0.2 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344212616|ref|YP_004796936.1| - 7.1e-12 45.1 1.3 1.1e-11 44.5 0.9 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Osmo_CC PF08946.5 gi|344212619|ref|YP_004796939.1| - 2.9e-05 23.9 0.1 9.7e-05 22.3 0.1 1.9 1 0 0 1 1 1 1 Osmosensory transporter coiled coil NPV_P10 PF05531.7 gi|344212619|ref|YP_004796939.1| - 0.00063 19.9 0.4 0.16 12.2 0.2 2.4 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|344212619|ref|YP_004796939.1| - 0.0015 18.1 0.5 0.0021 17.6 0.3 1.3 1 0 0 1 1 1 1 IncA protein DUF1515 PF07439.6 gi|344212619|ref|YP_004796939.1| - 0.0018 18.0 1.6 0.012 15.4 1.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1515) BLOC1_2 PF10046.4 gi|344212619|ref|YP_004796939.1| - 0.0027 17.8 0.3 0.009 16.1 0.1 1.7 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2205 PF10224.4 gi|344212619|ref|YP_004796939.1| - 0.027 14.0 0.0 0.063 12.8 0.0 1.6 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) MCPsignal PF00015.16 gi|344212619|ref|YP_004796939.1| - 0.036 13.5 1.7 0.047 13.2 1.1 1.2 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Herpes_UL14 PF03580.9 gi|344212619|ref|YP_004796939.1| - 0.044 13.5 2.0 0.058 13.1 1.4 1.3 1 0 0 1 1 1 0 Herpesvirus UL14-like protein UPF0184 PF03670.8 gi|344212619|ref|YP_004796939.1| - 0.053 13.7 2.8 0.18 11.9 0.2 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) Snapin_Pallidin PF14712.1 gi|344212619|ref|YP_004796939.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.6 2 0 0 2 2 2 0 Snapin/Pallidin Tropomyosin_1 PF12718.2 gi|344212619|ref|YP_004796939.1| - 0.068 13.0 3.1 0.099 12.4 2.1 1.3 1 0 0 1 1 1 0 Tropomyosin like Reo_sigmaC PF04582.7 gi|344212619|ref|YP_004796939.1| - 0.096 11.8 0.5 0.24 10.5 0.2 1.4 1 1 0 1 1 1 0 Reovirus sigma C capsid protein V_ATPase_I PF01496.14 gi|344212619|ref|YP_004796939.1| - 0.097 10.5 0.2 0.1 10.4 0.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF812 PF05667.6 gi|344212619|ref|YP_004796939.1| - 0.11 10.9 0.7 0.14 10.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) XhlA PF10779.4 gi|344212619|ref|YP_004796939.1| - 0.24 11.3 2.0 0.47 10.4 0.6 2.1 2 1 0 2 2 2 0 Haemolysin XhlA FUSC PF04632.7 gi|344212619|ref|YP_004796939.1| - 1.4 7.2 5.1 1.5 7.1 3.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Prefoldin_2 PF01920.15 gi|344212619|ref|YP_004796939.1| - 1.7 8.4 3.7 3.8 7.3 0.1 2.6 2 1 1 3 3 3 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|344212619|ref|YP_004796939.1| - 6.6 7.2 7.3 0.86 10.0 0.7 2.5 2 1 0 2 2 2 0 MerR, DNA binding T2SE PF00437.15 gi|344212621|ref|YP_004796941.1| - 6.2e-32 110.5 0.0 9.5e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|344212621|ref|YP_004796941.1| - 0.0025 17.8 1.8 0.0027 17.7 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|344212621|ref|YP_004796941.1| - 0.018 14.5 0.1 0.061 12.8 0.0 1.9 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|344212621|ref|YP_004796941.1| - 0.024 14.1 0.6 0.65 9.4 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|344212621|ref|YP_004796941.1| - 0.14 12.2 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|344212621|ref|YP_004796941.1| - 0.25 11.6 0.0 0.39 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF2850 PF11012.3 gi|344212623|ref|YP_004796943.1| - 0.0067 16.5 0.0 0.0098 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2850) SBP_bac_3 PF00497.15 gi|344212625|ref|YP_004796945.1| - 0.12 11.5 0.7 0.15 11.2 0.4 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 NAD_binding_10 PF13460.1 gi|344212628|ref|YP_004796948.1| - 1.1e-14 54.8 0.2 2.3e-14 53.8 0.2 1.4 2 0 0 2 2 2 1 NADH(P)-binding TrkA_N PF02254.13 gi|344212628|ref|YP_004796948.1| - 6.9e-09 35.7 0.0 1.8e-08 34.3 0.0 1.7 2 0 0 2 2 2 1 TrkA-N domain Epimerase PF01370.16 gi|344212628|ref|YP_004796948.1| - 1.4e-06 27.9 0.0 1.9e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344212628|ref|YP_004796948.1| - 3.6e-05 22.6 0.0 0.00023 19.9 0.0 2.0 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family UDPG_MGDP_dh_N PF03721.9 gi|344212628|ref|YP_004796948.1| - 0.00047 19.5 0.0 0.00079 18.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|344212628|ref|YP_004796948.1| - 0.0015 18.0 0.0 0.0034 16.8 0.0 1.6 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|344212628|ref|YP_004796948.1| - 0.0056 17.0 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF1731 PF08338.6 gi|344212628|ref|YP_004796948.1| - 0.01 15.3 0.0 0.024 14.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) Semialdhyde_dh PF01118.19 gi|344212628|ref|YP_004796948.1| - 0.04 14.2 0.0 0.09 13.0 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain HTH_29 PF13551.1 gi|344212628|ref|YP_004796948.1| - 0.057 13.5 0.1 0.24 11.5 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn helix GFO_IDH_MocA PF01408.17 gi|344212628|ref|YP_004796948.1| - 0.1 13.0 0.1 0.52 10.8 0.0 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DHH PF01368.15 gi|344212629|ref|YP_004796949.1| - 1.5e-12 47.4 0.0 2.4e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|344212629|ref|YP_004796949.1| - 4.7e-07 29.4 1.5 1.1e-06 28.2 1.0 1.7 1 0 0 1 1 1 1 DHHA1 domain Aldo_ket_red PF00248.16 gi|344212630|ref|YP_004796950.1| - 8.2e-38 129.8 0.0 7.1e-37 126.7 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family DUF2322 PF10084.4 gi|344212630|ref|YP_004796950.1| - 0.1 12.3 0.1 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) DUF1451 PF07295.6 gi|344212631|ref|YP_004796951.1| - 0.011 15.4 0.1 0.013 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE PF01363.16 gi|344212631|ref|YP_004796951.1| - 0.017 14.9 0.3 0.021 14.6 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger zf-IS66 PF13005.2 gi|344212631|ref|YP_004796951.1| - 0.034 14.1 0.2 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|344212631|ref|YP_004796951.1| - 0.046 13.0 3.1 2.1 7.7 0.2 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|344212631|ref|YP_004796951.1| - 0.055 13.4 3.7 0.13 12.2 2.5 1.6 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|344212631|ref|YP_004796951.1| - 0.067 13.1 1.0 0.099 12.6 0.7 1.3 1 0 0 1 1 1 0 Zinc ribbon domain C1_4 PF07975.7 gi|344212631|ref|YP_004796951.1| - 0.084 12.8 0.2 0.12 12.4 0.2 1.2 1 0 0 1 1 1 0 TFIIH C1-like domain Nudix_N_2 PF14803.1 gi|344212631|ref|YP_004796951.1| - 0.1 12.2 2.4 0.76 9.5 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF3279 PF11682.3 gi|344212631|ref|YP_004796951.1| - 0.11 12.0 0.2 0.21 11.1 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3279) DZR PF12773.2 gi|344212631|ref|YP_004796951.1| - 0.17 11.7 1.6 0.35 10.7 1.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|344212631|ref|YP_004796951.1| - 0.19 10.9 3.1 0.4 9.9 2.1 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF1272 PF06906.6 gi|344212631|ref|YP_004796951.1| - 0.4 10.5 3.7 38 4.2 2.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.1 gi|344212631|ref|YP_004796951.1| - 0.73 9.6 3.1 2 8.1 2.1 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.4 gi|344212631|ref|YP_004796951.1| - 0.95 9.2 3.6 0.48 10.1 0.5 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 MFS_1 PF07690.11 gi|344212632|ref|YP_004796952.1| - 7.2e-27 94.0 51.4 6e-24 84.4 23.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily NUDIX PF00293.23 gi|344212634|ref|YP_004796954.1| - 1.5e-17 63.4 0.1 2e-17 63.0 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Bac_luciferase PF00296.15 gi|344212635|ref|YP_004796955.1| - 0.00032 19.9 1.7 0.00055 19.1 1.1 1.6 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.19 gi|344212636|ref|YP_004796956.1| - 1e-62 212.1 9.0 1.2e-62 211.9 6.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344212636|ref|YP_004796956.1| - 6.6e-06 25.4 2.3 3.3e-05 23.1 1.0 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|344212636|ref|YP_004796956.1| - 2.8e-05 22.7 1.2 0.0014 17.2 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|344212636|ref|YP_004796956.1| - 3.6e-05 24.0 3.2 6.4e-05 23.2 1.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|344212636|ref|YP_004796956.1| - 4e-05 22.6 6.2 6.5e-05 21.9 4.3 1.5 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|344212636|ref|YP_004796956.1| - 6.1e-05 22.9 2.4 0.00029 20.7 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|344212636|ref|YP_004796956.1| - 7.9e-05 22.6 4.8 0.00024 21.0 3.3 2.0 1 1 1 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|344212636|ref|YP_004796956.1| - 0.00051 20.2 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|344212636|ref|YP_004796956.1| - 0.00062 19.1 0.3 0.0012 18.2 0.2 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.1 gi|344212636|ref|YP_004796956.1| - 0.001 19.1 0.3 0.027 14.5 0.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|344212636|ref|YP_004796956.1| - 0.0012 17.9 1.2 0.0022 17.1 0.8 1.6 1 1 0 1 1 1 1 Thi4 family ApbA PF02558.11 gi|344212636|ref|YP_004796956.1| - 0.0015 17.9 0.9 0.019 14.4 0.3 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|344212636|ref|YP_004796956.1| - 0.0087 15.8 0.4 0.017 14.8 0.3 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|344212636|ref|YP_004796956.1| - 0.0088 15.7 0.1 0.02 14.5 0.1 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.2 gi|344212636|ref|YP_004796956.1| - 0.016 14.3 3.5 0.021 13.8 2.4 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|344212636|ref|YP_004796956.1| - 0.029 14.1 2.3 0.1 12.3 0.3 2.5 2 1 0 3 3 3 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|344212636|ref|YP_004796956.1| - 0.093 11.3 1.5 0.14 10.7 1.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.17 gi|344212636|ref|YP_004796956.1| - 0.68 8.7 3.5 0.69 8.6 1.8 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A HSP20 PF00011.16 gi|344212637|ref|YP_004796957.1| - 2.8e-09 36.7 0.0 5.7e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CGGC PF08821.6 gi|344212638|ref|YP_004796958.1| - 0.072 13.1 0.3 0.072 13.1 0.2 1.0 1 0 0 1 1 1 0 CGGC domain zf-Di19 PF05605.7 gi|344212638|ref|YP_004796958.1| - 0.074 13.1 0.5 0.074 13.1 0.3 1.7 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF429 PF04250.8 gi|344212639|ref|YP_004796959.1| - 4.4e-06 26.0 0.0 1e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF429) CHASE2 PF05226.6 gi|344212639|ref|YP_004796959.1| - 0.12 11.5 0.0 0.3 10.2 0.0 1.5 1 1 1 2 2 2 0 CHASE2 domain MDMPI_N PF11716.3 gi|344212639|ref|YP_004796959.1| - 0.14 12.6 3.6 0.087 13.2 0.6 2.0 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain ABC_membrane PF00664.18 gi|344212640|ref|YP_004796960.1| - 2.7e-35 122.1 1.2 3.6e-35 121.7 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|344212640|ref|YP_004796960.1| - 9.6e-32 110.1 0.0 1.8e-31 109.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|344212640|ref|YP_004796960.1| - 0.00022 20.5 0.0 0.0012 18.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|344212640|ref|YP_004796960.1| - 0.0025 18.5 3.5 0.049 14.4 1.8 2.8 2 1 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|344212640|ref|YP_004796960.1| - 0.0027 16.8 0.0 0.0077 15.3 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_21 PF13304.1 gi|344212640|ref|YP_004796960.1| - 0.016 15.2 0.0 4.9 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|344212640|ref|YP_004796960.1| - 0.023 14.2 0.1 0.068 12.7 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|344212640|ref|YP_004796960.1| - 0.026 13.9 3.1 0.2 11.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain KAP_NTPase PF07693.9 gi|344212640|ref|YP_004796960.1| - 0.057 12.3 0.0 0.97 8.3 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain AAA_22 PF13401.1 gi|344212640|ref|YP_004796960.1| - 0.088 12.9 0.3 9.8 6.3 0.0 2.6 2 0 0 2 2 2 0 AAA domain AcetDehyd-dimer PF09290.6 gi|344212640|ref|YP_004796960.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation DUF258 PF03193.11 gi|344212640|ref|YP_004796960.1| - 0.24 10.5 0.0 0.43 9.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|344212640|ref|YP_004796960.1| - 0.28 11.4 1.3 0.9 9.8 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|344212640|ref|YP_004796960.1| - 0.46 10.4 5.2 2.7 7.9 3.6 2.3 1 1 0 1 1 1 0 AAA ATPase domain Na_H_antiporter PF03553.9 gi|344212641|ref|YP_004796961.1| - 2e-57 194.5 35.5 7.3e-56 189.4 11.2 2.2 1 1 1 2 2 2 2 Na+/H+ antiporter family Radical_SAM PF04055.16 gi|344212643|ref|YP_004796963.1| - 1.6e-16 60.9 0.0 1.4e-15 57.8 0.0 2.5 2 1 0 2 2 2 1 Radical SAM superfamily HHH PF00633.18 gi|344212643|ref|YP_004796963.1| - 1.1e-05 24.8 0.0 3.7e-05 23.1 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|344212643|ref|YP_004796963.1| - 0.00042 20.0 0.0 0.0019 18.0 0.0 2.0 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_3 PF12836.2 gi|344212643|ref|YP_004796963.1| - 0.00048 20.0 0.0 0.0014 18.5 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|344212643|ref|YP_004796963.1| - 0.064 13.1 0.0 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|344212643|ref|YP_004796963.1| - 0.13 12.4 0.0 0.57 10.3 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain UPF0104 PF03706.8 gi|344212644|ref|YP_004796964.1| - 2.8e-32 112.1 28.4 3.8e-32 111.7 19.7 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|344212644|ref|YP_004796964.1| - 4.4e-25 88.3 0.0 6.3e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344212644|ref|YP_004796964.1| - 3.3e-13 49.9 0.2 8.6e-13 48.6 0.2 1.6 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|344212644|ref|YP_004796964.1| - 5.9e-07 28.8 0.0 8.5e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|344212644|ref|YP_004796964.1| - 0.0035 17.6 0.1 0.0064 16.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF1269 PF06897.7 gi|344212644|ref|YP_004796964.1| - 0.15 12.1 3.8 2.1 8.4 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1269) DUF726 PF05277.7 gi|344212645|ref|YP_004796965.1| - 4.3e-09 35.7 0.0 6.5e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF726) DUF900 PF05990.7 gi|344212645|ref|YP_004796965.1| - 7.2e-08 32.0 0.0 8.6e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_5 PF12695.2 gi|344212645|ref|YP_004796965.1| - 1.5e-05 24.7 0.2 2.3e-05 24.1 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.8 gi|344212645|ref|YP_004796965.1| - 0.00031 20.4 0.0 0.00043 19.9 0.0 1.2 1 0 0 1 1 1 1 PGAP1-like protein Abhydrolase_6 PF12697.2 gi|344212645|ref|YP_004796965.1| - 0.00051 19.9 1.2 0.00092 19.1 0.8 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|344212645|ref|YP_004796965.1| - 0.00089 19.5 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain Lipase_3 PF01764.20 gi|344212645|ref|YP_004796965.1| - 0.0017 17.9 0.1 0.016 14.8 0.0 2.2 1 1 0 2 2 2 1 Lipase (class 3) LCAT PF02450.10 gi|344212645|ref|YP_004796965.1| - 0.0053 15.7 0.0 0.0078 15.2 0.0 1.2 1 0 0 1 1 1 1 Lecithin:cholesterol acyltransferase PE-PPE PF08237.6 gi|344212645|ref|YP_004796965.1| - 0.029 13.7 0.0 0.05 13.0 0.0 1.5 1 0 0 1 1 1 0 PE-PPE domain Ser_hydrolase PF06821.8 gi|344212645|ref|YP_004796965.1| - 0.075 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase TFIIB PF00382.14 gi|344212646|ref|YP_004796966.1| - 7e-41 137.8 0.8 1.2e-20 73.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344212646|ref|YP_004796966.1| - 5.2e-16 57.6 3.7 3.2e-15 55.1 2.4 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|344212646|ref|YP_004796966.1| - 0.089 12.4 1.2 0.2 11.3 0.8 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Sigma70_r4 PF04545.11 gi|344212646|ref|YP_004796966.1| - 0.24 10.7 4.0 0.7 9.2 0.0 3.3 4 0 0 4 4 4 0 Sigma-70, region 4 A2L_zn_ribbon PF08792.5 gi|344212646|ref|YP_004796966.1| - 0.26 10.8 0.9 0.5 9.9 0.6 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|344212646|ref|YP_004796966.1| - 0.88 9.9 3.3 0.68 10.2 0.5 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|344212646|ref|YP_004796966.1| - 6.9 6.7 7.0 54 3.8 3.4 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|344212646|ref|YP_004796966.1| - 7.4 6.6 7.6 5.5 7.0 0.9 2.5 1 1 1 2 2 2 0 Zinc ribbon domain N6_N4_Mtase PF01555.13 gi|344212647|ref|YP_004796967.1| - 5.9e-31 107.7 0.0 7.9e-31 107.3 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|344212647|ref|YP_004796967.1| - 3.6e-14 52.7 0.2 2.3e-06 27.6 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344212647|ref|YP_004796967.1| - 1.5e-05 25.3 0.1 3.9 8.0 0.0 3.4 3 0 0 3 3 3 3 Methyltransferase domain UPF0020 PF01170.13 gi|344212647|ref|YP_004796967.1| - 6.2e-05 22.6 0.0 0.071 12.6 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_18 PF12847.2 gi|344212647|ref|YP_004796967.1| - 0.0018 18.8 0.1 0.12 12.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212647|ref|YP_004796967.1| - 0.047 13.2 0.0 7.9 6.0 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain DHquinase_I PF01487.10 gi|344212648|ref|YP_004796968.1| - 4.5e-45 154.0 0.0 5.5e-45 153.7 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase TM2 PF05154.11 gi|344212649|ref|YP_004796969.1| - 2.4e-08 34.0 5.6 3.6e-08 33.4 3.9 1.2 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.1 gi|344212649|ref|YP_004796969.1| - 1.2e-07 30.6 0.4 1.8e-07 30.1 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|344212649|ref|YP_004796969.1| - 2.6e-05 23.9 1.8 3.6e-05 23.4 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344212649|ref|YP_004796969.1| - 7.5e-05 22.0 0.9 0.00011 21.5 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|344212649|ref|YP_004796969.1| - 0.00092 18.8 0.5 0.0016 18.0 0.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF2628 PF10947.3 gi|344212649|ref|YP_004796969.1| - 0.0048 16.6 1.4 0.0058 16.4 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2628) Prok-RING_1 PF14446.1 gi|344212649|ref|YP_004796969.1| - 0.0061 16.2 1.2 0.0083 15.8 0.8 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF4131 PF13567.1 gi|344212649|ref|YP_004796969.1| - 0.0066 15.8 0.2 0.0078 15.6 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) NinF PF05810.7 gi|344212649|ref|YP_004796969.1| - 0.023 14.5 0.4 0.046 13.5 0.3 1.5 1 0 0 1 1 1 0 NinF protein Fer2_4 PF13510.1 gi|344212649|ref|YP_004796969.1| - 0.091 12.5 0.2 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain OrfB_Zn_ribbon PF07282.6 gi|344212649|ref|YP_004796969.1| - 0.14 11.8 0.4 0.22 11.1 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.7 gi|344212649|ref|YP_004796969.1| - 0.15 11.9 1.1 0.24 11.2 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF2614 PF11023.3 gi|344212649|ref|YP_004796969.1| - 0.23 11.2 3.8 1.6 8.4 2.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2614) DHQS PF01959.11 gi|344212650|ref|YP_004796970.1| - 4.7e-150 499.1 3.4 5.3e-150 499.0 2.3 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) Hint PF01079.15 gi|344212650|ref|YP_004796970.1| - 0.00018 20.7 0.0 0.015 14.5 0.0 2.2 2 0 0 2 2 2 2 Hint module Hint_2 PF13403.1 gi|344212650|ref|YP_004796970.1| - 0.00036 20.4 0.6 0.23 11.3 0.0 2.9 3 0 0 3 3 3 2 Hint domain QRPTase_C PF01729.14 gi|344212650|ref|YP_004796970.1| - 0.0093 15.4 1.1 0.023 14.2 0.2 2.1 2 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF1312 PF07009.6 gi|344212650|ref|YP_004796970.1| - 0.031 14.0 0.0 0.24 11.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1312) DeoC PF01791.4 gi|344212651|ref|YP_004796971.1| - 4.5e-45 153.7 0.1 5.5e-45 153.4 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|344212651|ref|YP_004796971.1| - 0.00013 21.3 0.1 0.00027 20.3 0.0 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel OMPdecase PF00215.19 gi|344212651|ref|YP_004796971.1| - 0.0039 16.6 0.4 0.0039 16.6 0.3 1.6 2 0 0 2 2 2 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TMP-TENI PF02581.12 gi|344212651|ref|YP_004796971.1| - 0.0098 15.0 0.1 0.86 8.6 0.0 2.6 2 1 0 2 2 2 1 Thiamine monophosphate synthase/TENI DUF561 PF04481.7 gi|344212651|ref|YP_004796971.1| - 0.0099 14.8 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF561) ThiG PF05690.9 gi|344212651|ref|YP_004796971.1| - 0.01 14.9 0.8 0.021 13.9 0.2 1.8 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DSHCT PF08148.7 gi|344212651|ref|YP_004796971.1| - 0.062 12.5 0.0 2 7.6 0.0 2.2 2 0 0 2 2 2 0 DSHCT (NUC185) domain RuvA_C PF07499.8 gi|344212651|ref|YP_004796971.1| - 0.14 12.3 3.5 0.21 11.7 0.6 2.6 3 0 0 3 3 3 0 RuvA, C-terminal domain Trp_syntA PF00290.15 gi|344212652|ref|YP_004796972.1| - 9.5e-87 289.7 0.0 5.3e-86 287.3 0.0 1.8 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|344212652|ref|YP_004796972.1| - 1.7e-05 24.1 0.3 6e-05 22.4 0.2 1.8 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|344212652|ref|YP_004796972.1| - 0.00018 20.8 0.1 0.00034 19.9 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PA PF02225.17 gi|344212652|ref|YP_004796972.1| - 0.013 15.1 0.2 3.2 7.5 0.0 2.6 2 1 0 2 2 2 0 PA domain NanE PF04131.9 gi|344212652|ref|YP_004796972.1| - 0.11 11.4 0.1 0.58 9.0 0.0 2.0 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|344212652|ref|YP_004796972.1| - 0.11 11.5 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PALP PF00291.20 gi|344212653|ref|YP_004796973.1| - 1.4e-32 113.1 0.2 2.5e-32 112.3 0.1 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|344212654|ref|YP_004796974.1| - 4.4e-68 229.0 0.0 4.9e-68 228.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|344212654|ref|YP_004796974.1| - 9.2e-06 25.2 0.1 2e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|344212654|ref|YP_004796974.1| - 2.2e-05 23.5 0.4 5.2e-05 22.3 0.2 1.7 1 1 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|344212654|ref|YP_004796974.1| - 0.00062 19.1 0.1 0.0038 16.5 0.1 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|344212654|ref|YP_004796974.1| - 0.00081 18.3 2.7 0.0013 17.6 1.4 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|344212654|ref|YP_004796974.1| - 0.00096 18.2 4.5 0.09 11.8 0.3 3.4 1 1 3 4 4 4 1 Thiazole biosynthesis protein ThiG Amidohydro_3 PF07969.6 gi|344212654|ref|YP_004796974.1| - 0.0014 17.8 1.8 0.0016 17.7 0.4 1.6 1 1 0 1 1 1 1 Amidohydrolase family PcrB PF01884.12 gi|344212654|ref|YP_004796974.1| - 0.017 14.3 0.1 0.035 13.3 0.0 1.6 1 1 0 1 1 1 0 PcrB family IMPDH PF00478.20 gi|344212654|ref|YP_004796974.1| - 0.017 14.0 0.4 0.074 11.9 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|344212654|ref|YP_004796974.1| - 0.029 13.3 0.1 0.044 12.7 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PDZ PF00595.19 gi|344212654|ref|YP_004796974.1| - 0.078 13.1 0.1 0.23 11.6 0.0 1.8 2 0 0 2 2 2 0 PDZ domain (Also known as DHR or GLGF) NMO PF03060.10 gi|344212654|ref|YP_004796974.1| - 0.72 8.9 6.5 2.6 7.0 4.5 2.1 1 1 0 1 1 1 0 Nitronate monooxygenase Acetyltransf_1 PF00583.19 gi|344212655|ref|YP_004796975.1| - 2.3e-09 37.1 0.0 7.4e-09 35.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344212655|ref|YP_004796975.1| - 9.4e-09 35.4 0.0 1.2e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344212655|ref|YP_004796975.1| - 9.9e-05 22.5 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344212655|ref|YP_004796975.1| - 0.00011 22.2 0.0 0.00022 21.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|344212655|ref|YP_004796975.1| - 0.00048 20.1 0.0 0.00053 19.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain MMR_HSR1_C PF08438.5 gi|344212656|ref|YP_004796976.1| - 2.3e-29 101.7 0.0 3.8e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|344212656|ref|YP_004796976.1| - 1.4e-18 66.9 0.0 3.3e-17 62.5 0.0 2.5 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.16 gi|344212656|ref|YP_004796976.1| - 4.4e-10 39.2 0.0 1.1e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|344212656|ref|YP_004796976.1| - 2.6e-05 23.5 0.0 0.00017 20.8 0.0 2.2 3 0 0 3 3 3 1 Ferrous iron transport protein B ArgK PF03308.11 gi|344212656|ref|YP_004796976.1| - 0.085 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Miro PF08477.8 gi|344212656|ref|YP_004796976.1| - 0.11 13.0 0.0 0.37 11.3 0.0 2.0 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|344212656|ref|YP_004796976.1| - 0.13 12.0 0.1 0.64 9.8 0.0 2.0 2 0 0 2 2 2 0 Dynamin family MCPsignal PF00015.16 gi|344212657|ref|YP_004796977.1| - 2.2e-47 161.3 57.9 3.9e-46 157.2 20.2 3.3 2 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2892 PF11127.3 gi|344212657|ref|YP_004796977.1| - 2.9e-05 23.8 3.5 7.4e-05 22.4 2.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) BLOC1_2 PF10046.4 gi|344212657|ref|YP_004796977.1| - 4.7e-05 23.4 24.2 1.4 9.0 0.7 6.3 4 2 2 6 6 6 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med9 PF07544.8 gi|344212657|ref|YP_004796977.1| - 5.6e-05 22.8 4.9 0.11 12.2 0.9 3.9 2 1 1 3 3 3 2 RNA polymerase II transcription mediator complex subunit 9 HAMP PF00672.20 gi|344212657|ref|YP_004796977.1| - 0.00012 22.1 11.9 0.56 10.4 0.0 5.3 4 1 0 4 4 4 2 HAMP domain Myosin_tail_1 PF01576.14 gi|344212657|ref|YP_004796977.1| - 0.018 12.8 32.7 0.011 13.4 10.5 2.3 1 1 0 2 2 2 0 Myosin tail AAA_13 PF13166.1 gi|344212657|ref|YP_004796977.1| - 0.058 11.8 18.8 0.61 8.4 5.7 2.4 1 1 1 2 2 2 0 AAA domain COQ9 PF08511.6 gi|344212657|ref|YP_004796977.1| - 0.12 11.9 2.0 0.27 10.7 0.2 2.6 2 0 0 2 2 2 0 COQ9 AATF-Che1 PF13339.1 gi|344212657|ref|YP_004796977.1| - 0.2 11.7 13.2 1.6 8.9 2.4 3.7 3 1 0 3 3 3 0 Apoptosis antagonizing transcription factor DUF2130 PF09903.4 gi|344212657|ref|YP_004796977.1| - 0.26 9.9 3.9 0.5 9.0 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) Laminin_II PF06009.7 gi|344212657|ref|YP_004796977.1| - 0.38 10.4 31.3 0.28 10.9 2.1 5.6 2 2 4 6 6 6 0 Laminin Domain II Atg14 PF10186.4 gi|344212657|ref|YP_004796977.1| - 0.64 8.8 10.7 1.1 8.1 1.5 2.5 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|344212657|ref|YP_004796977.1| - 0.66 9.7 26.9 0.24 11.2 1.5 4.4 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus YscO PF07321.7 gi|344212657|ref|YP_004796977.1| - 0.74 9.6 21.4 0.045 13.5 3.7 3.0 3 0 0 3 3 3 0 Type III secretion protein YscO IFT57 PF10498.4 gi|344212657|ref|YP_004796977.1| - 0.75 8.4 16.4 4.3 5.9 0.1 3.1 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 GAS PF13851.1 gi|344212657|ref|YP_004796977.1| - 0.87 8.7 7.0 3.8 6.6 0.6 3.1 3 0 0 3 3 3 0 Growth-arrest specific micro-tubule binding SNARE PF05739.14 gi|344212657|ref|YP_004796977.1| - 1.2 8.8 23.8 0.18 11.5 2.1 6.1 2 2 4 6 6 6 0 SNARE domain TPR_MLP1_2 PF07926.7 gi|344212657|ref|YP_004796977.1| - 1.6 8.5 31.6 2.4 7.9 6.4 4.0 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein Spc7 PF08317.6 gi|344212657|ref|YP_004796977.1| - 1.8 7.1 16.0 1.3 7.6 3.4 3.3 2 1 1 3 3 3 0 Spc7 kinetochore protein Mod_r PF07200.8 gi|344212657|ref|YP_004796977.1| - 2 8.3 11.0 5.2 6.9 0.8 3.8 3 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein TMP_2 PF06791.8 gi|344212657|ref|YP_004796977.1| - 2.1 7.9 47.3 0.24 10.9 2.6 5.0 1 1 3 5 5 5 0 Prophage tail length tape measure protein 23S_rRNA_IVP PF05635.6 gi|344212657|ref|YP_004796977.1| - 2.9 7.8 10.7 1.5 8.7 1.3 3.2 2 1 0 2 2 2 0 23S rRNA-intervening sequence protein Mnd1 PF03962.10 gi|344212657|ref|YP_004796977.1| - 3.1 7.4 22.1 0.52 9.9 0.9 3.9 2 1 2 4 4 4 0 Mnd1 family APG6 PF04111.7 gi|344212657|ref|YP_004796977.1| - 3.2 6.6 20.6 2.1 7.3 1.5 3.3 2 1 2 4 4 4 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|344212657|ref|YP_004796977.1| - 3.5 7.7 15.4 13 5.9 1.5 4.6 2 1 4 6 6 6 0 Fibrinogen alpha/beta chain family DUF948 PF06103.6 gi|344212657|ref|YP_004796977.1| - 9.1 6.2 30.9 0.19 11.6 1.5 5.4 4 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) CRISPR_Cas2 PF09827.4 gi|344212658|ref|YP_004796978.1| - 0.02 15.0 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 CRISPR associated protein Cas2 DUF1949 PF09186.6 gi|344212658|ref|YP_004796978.1| - 0.1 12.2 0.3 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) Bax1-I PF01027.15 gi|344212659|ref|YP_004796979.1| - 1.8 8.1 16.7 2.5 7.6 11.6 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Thioredoxin_4 PF13462.1 gi|344212660|ref|YP_004796980.1| - 9.2e-15 55.0 0.0 1.1e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|344212660|ref|YP_004796980.1| - 1.7e-08 34.6 0.0 8e-08 32.4 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|344212660|ref|YP_004796980.1| - 9.5e-05 22.0 0.2 0.00016 21.3 0.1 1.3 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|344212660|ref|YP_004796980.1| - 0.053 13.0 0.6 0.21 11.1 0.1 1.9 2 0 0 2 2 2 0 Thioredoxin TAT_signal PF10518.4 gi|344212660|ref|YP_004796980.1| - 0.11 12.5 0.9 0.19 11.8 0.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|344212660|ref|YP_004796980.1| - 0.11 11.6 1.7 0.22 10.7 1.2 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RHH_1 PF01402.16 gi|344212661|ref|YP_004796981.1| - 0.0015 18.3 1.1 0.0029 17.4 0.3 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-HC2 PF13490.1 gi|344212661|ref|YP_004796981.1| - 0.092 12.7 0.3 0.092 12.7 0.2 2.2 2 0 0 2 2 2 0 Putative zinc-finger DUF3368 PF11848.3 gi|344212662|ref|YP_004796982.1| - 0.0013 18.2 0.0 0.0024 17.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN_4 PF13638.1 gi|344212662|ref|YP_004796982.1| - 0.074 13.1 0.4 2 8.5 0.0 2.2 1 1 0 2 2 2 0 PIN domain OpuAC PF04069.7 gi|344212663|ref|YP_004796983.1| - 2.5e-39 135.1 1.2 3.4e-39 134.7 0.8 1.0 1 0 0 1 1 1 1 Substrate binding domain of ABC-type glycine betaine transport system FIST PF08495.5 gi|344212663|ref|YP_004796983.1| - 0.1 11.7 0.7 0.19 10.8 0.5 1.4 1 0 0 1 1 1 0 FIST N domain MCPsignal PF00015.16 gi|344212664|ref|YP_004796984.1| - 1.8e-45 155.1 71.7 2.6e-45 154.5 25.2 3.8 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344212664|ref|YP_004796984.1| - 9.3e-14 51.3 17.7 2.1e-11 43.8 0.5 5.5 5 0 0 5 5 5 2 HAMP domain IncA PF04156.9 gi|344212664|ref|YP_004796984.1| - 0.0015 18.1 4.4 0.0015 18.1 3.1 5.2 2 1 1 4 4 4 1 IncA protein DUF948 PF06103.6 gi|344212664|ref|YP_004796984.1| - 1 9.2 34.2 1.3 8.9 1.8 7.5 4 2 3 7 7 7 0 Bacterial protein of unknown function (DUF948) AAA_27 PF13514.1 gi|344212664|ref|YP_004796984.1| - 1.5 6.3 57.4 0.19 9.4 24.5 2.3 1 1 2 3 3 3 0 AAA domain DASH_Duo1 PF08651.5 gi|344212664|ref|YP_004796984.1| - 1.5 8.4 11.8 6 6.5 0.3 5.5 6 0 0 6 6 6 0 DASH complex subunit Duo1 Reo_sigmaC PF04582.7 gi|344212664|ref|YP_004796984.1| - 2.2 7.3 29.2 0.26 10.4 7.8 3.0 2 1 0 2 2 2 0 Reovirus sigma C capsid protein DASH_Dam1 PF08653.5 gi|344212664|ref|YP_004796984.1| - 3.1 7.6 7.0 4.7 7.0 0.2 3.9 5 0 0 5 5 5 0 DASH complex subunit Dam1 Laminin_II PF06009.7 gi|344212664|ref|YP_004796984.1| - 3.7 7.2 42.6 0.036 13.8 4.9 5.6 3 2 2 5 5 5 0 Laminin Domain II HTH_10 PF04967.7 gi|344212665|ref|YP_004796985.1| - 4.6e-12 45.3 0.0 7e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Strep_67kDa_ant PF06100.6 gi|344212666|ref|YP_004796986.1| - 4.4e-179 595.9 0.0 5e-179 595.8 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|344212666|ref|YP_004796986.1| - 3.8e-06 26.8 0.1 8.1e-06 25.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DUF21 PF01595.15 gi|344212667|ref|YP_004796987.1| - 2.5e-50 170.3 3.3 3.2e-50 169.9 2.3 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|344212667|ref|YP_004796987.1| - 5.8e-22 77.2 0.1 2.2e-21 75.4 0.0 2.1 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|344212667|ref|YP_004796987.1| - 6.1e-17 61.1 3.9 3.5e-09 36.2 0.8 2.4 2 0 0 2 2 2 2 CBS domain SCP2_2 PF13530.1 gi|344212668|ref|YP_004796988.1| - 1.5e-44 152.0 0.2 2e-44 151.5 0.2 1.2 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|344212668|ref|YP_004796988.1| - 1.2e-26 93.0 0.0 4.4e-26 91.2 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344212668|ref|YP_004796988.1| - 1e-08 35.2 0.0 4.9e-08 33.0 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344212668|ref|YP_004796988.1| - 4.3e-08 33.3 0.9 0.0039 17.2 0.0 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344212668|ref|YP_004796988.1| - 2.1e-07 30.8 0.1 1.7e-06 27.9 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|344212668|ref|YP_004796988.1| - 0.00055 19.7 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|344212668|ref|YP_004796988.1| - 0.0033 17.1 0.0 0.008 15.9 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein BCD PF15461.1 gi|344212669|ref|YP_004796989.1| - 9.4e-67 225.1 14.8 9.4e-67 225.1 10.3 1.3 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase DUF485 PF04341.7 gi|344212669|ref|YP_004796989.1| - 0.025 14.2 0.2 0.025 14.2 0.1 3.5 4 0 0 4 4 4 0 Protein of unknown function, DUF485 Amino_oxidase PF01593.19 gi|344212670|ref|YP_004796990.1| - 1.3e-24 87.1 0.2 1.7e-24 86.7 0.1 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|344212670|ref|YP_004796990.1| - 1.1e-16 60.5 0.6 3.4e-16 59.0 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|344212670|ref|YP_004796990.1| - 4.4e-15 55.4 3.9 5.7e-08 32.0 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|344212670|ref|YP_004796990.1| - 2.2e-09 37.6 2.2 5.3e-06 26.7 0.3 3.6 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|344212670|ref|YP_004796990.1| - 3.2e-08 33.8 0.1 0.0012 19.0 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344212670|ref|YP_004796990.1| - 7.4e-07 28.5 0.0 8.2e-06 25.1 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344212670|ref|YP_004796990.1| - 1.2e-05 25.3 0.0 0.00028 20.8 0.2 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|344212670|ref|YP_004796990.1| - 2.4e-05 23.3 2.0 5.6e-05 22.1 1.1 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|344212670|ref|YP_004796990.1| - 3.9e-05 22.8 1.2 5.2e-05 22.4 0.4 1.5 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|344212670|ref|YP_004796990.1| - 5.2e-05 21.8 0.0 0.017 13.5 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|344212670|ref|YP_004796990.1| - 0.00091 18.3 0.1 0.0017 17.4 0.1 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|344212670|ref|YP_004796990.1| - 0.00092 18.1 1.1 0.0015 17.5 0.8 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Strep_67kDa_ant PF06100.6 gi|344212670|ref|YP_004796990.1| - 0.054 11.8 0.0 0.071 11.4 0.0 1.2 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family 3HCDH_N PF02737.13 gi|344212670|ref|YP_004796990.1| - 0.17 11.5 0.6 0.32 10.6 0.4 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|344212670|ref|YP_004796990.1| - 0.19 11.4 0.2 0.43 10.3 0.1 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pribosyltran PF00156.22 gi|344212671|ref|YP_004796991.1| - 3.7e-18 65.4 0.5 5.3e-18 64.9 0.4 1.3 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|344212671|ref|YP_004796991.1| - 0.0017 17.5 0.0 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|344212671|ref|YP_004796991.1| - 0.0053 16.0 0.1 0.0095 15.2 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase EutN_CcmL PF03319.8 gi|344212671|ref|YP_004796991.1| - 0.031 14.6 0.2 0.054 13.8 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutN/carboxysome DUF1779 PF08680.5 gi|344212672|ref|YP_004796992.1| - 0.096 12.5 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1779) DUF2849 PF11011.3 gi|344212672|ref|YP_004796992.1| - 0.099 12.9 1.0 0.25 11.6 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2849) DsbB PF02600.11 gi|344212673|ref|YP_004796993.1| - 8.7e-30 103.5 10.9 1.5e-29 102.8 7.5 1.4 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Xlink PF00193.12 gi|344212673|ref|YP_004796993.1| - 0.088 12.9 0.0 0.19 11.8 0.0 1.5 1 1 0 1 1 1 0 Extracellular link domain Aldo_ket_red PF00248.16 gi|344212674|ref|YP_004796994.1| - 1.8e-75 253.4 0.0 2.2e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family MFS_1 PF07690.11 gi|344212675|ref|YP_004796995.1| - 8.7e-13 47.6 29.8 8.7e-13 47.6 20.7 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|344212675|ref|YP_004796995.1| - 0.0035 17.1 2.2 0.046 13.5 0.1 3.1 2 1 0 2 2 2 1 MFS_1 like family LacY_symp PF01306.14 gi|344212675|ref|YP_004796995.1| - 0.015 13.8 4.2 0.037 12.5 1.2 2.2 2 0 0 2 2 2 0 LacY proton/sugar symporter Sugar_tr PF00083.19 gi|344212675|ref|YP_004796995.1| - 0.094 11.2 18.7 0.013 14.0 1.8 2.7 3 0 0 3 3 3 0 Sugar (and other) transporter UPF0227 PF05728.7 gi|344212675|ref|YP_004796995.1| - 0.23 11.1 0.1 0.42 10.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) HhH-GPD PF00730.20 gi|344212676|ref|YP_004796996.1| - 3.5e-21 75.5 0.0 4.8e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|344212676|ref|YP_004796996.1| - 0.00033 20.7 7.3 0.00081 19.4 5.1 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III DUF732 PF05305.9 gi|344212676|ref|YP_004796996.1| - 0.0069 16.4 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF732) HHH PF00633.18 gi|344212676|ref|YP_004796996.1| - 0.018 14.7 0.0 0.058 13.1 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|344212676|ref|YP_004796996.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) Copper-bind PF00127.15 gi|344212677|ref|YP_004796997.1| - 3e-14 53.0 0.1 1e-13 51.3 0.1 2.0 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SAM_adeno_trans PF01887.11 gi|344212678|ref|YP_004796998.1| - 2.4e-80 269.3 0.7 2.7e-80 269.1 0.5 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_2 PF01467.21 gi|344212679|ref|YP_004796999.1| - 4e-18 65.9 0.1 5.3e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|344212679|ref|YP_004796999.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.5 1 0 0 1 1 1 0 Citrate lyase ligase C-terminal domain Lon_C PF05362.8 gi|344212680|ref|YP_004797000.1| - 2.8e-35 121.4 4.6 4.3e-35 120.8 3.2 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|344212680|ref|YP_004797000.1| - 4.1e-30 104.9 0.0 1.1e-22 80.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|344212680|ref|YP_004797000.1| - 6.7e-18 64.6 0.1 7.4e-11 41.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|344212680|ref|YP_004797000.1| - 4.8e-16 58.6 0.0 6.1e-09 35.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|344212680|ref|YP_004797000.1| - 2.2e-11 43.1 0.9 0.0091 14.8 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|344212680|ref|YP_004797000.1| - 6.2e-10 38.9 0.0 0.00072 19.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|344212680|ref|YP_004797000.1| - 3e-09 36.4 0.7 7.5e-09 35.1 0.5 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|344212680|ref|YP_004797000.1| - 1e-06 28.9 0.0 0.033 14.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|344212680|ref|YP_004797000.1| - 6e-06 26.3 0.0 0.023 14.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|344212680|ref|YP_004797000.1| - 5.1e-05 22.4 0.1 0.009 15.0 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|344212680|ref|YP_004797000.1| - 0.00016 21.8 0.0 0.0097 16.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|344212680|ref|YP_004797000.1| - 0.0003 19.7 0.1 0.024 13.5 0.0 3.0 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_3 PF07726.6 gi|344212680|ref|YP_004797000.1| - 0.00034 20.2 0.1 0.45 10.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|344212680|ref|YP_004797000.1| - 0.00074 18.3 2.3 0.077 11.6 0.0 2.8 4 0 0 4 4 4 1 TIP49 C-terminus AAA_30 PF13604.1 gi|344212680|ref|YP_004797000.1| - 0.0014 18.2 0.0 0.022 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|344212680|ref|YP_004797000.1| - 0.0015 18.2 0.0 0.0044 16.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_PrkA PF08298.6 gi|344212680|ref|YP_004797000.1| - 0.0032 16.2 0.0 0.18 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_18 PF13238.1 gi|344212680|ref|YP_004797000.1| - 0.0058 16.9 0.0 0.025 14.8 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|344212680|ref|YP_004797000.1| - 0.0069 16.2 0.1 0.034 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|344212680|ref|YP_004797000.1| - 0.0072 15.5 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 PhoH-like protein Zeta_toxin PF06414.7 gi|344212680|ref|YP_004797000.1| - 0.01 14.9 0.0 0.024 13.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_2 PF07724.9 gi|344212680|ref|YP_004797000.1| - 0.017 15.0 0.4 4.9 7.0 0.0 3.2 3 0 0 3 3 3 0 AAA domain (Cdc48 subfamily) DUF815 PF05673.8 gi|344212680|ref|YP_004797000.1| - 0.02 13.8 0.0 0.043 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|344212680|ref|YP_004797000.1| - 0.025 14.8 0.0 0.071 13.4 0.0 1.8 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.12 gi|344212680|ref|YP_004797000.1| - 0.027 13.9 0.0 0.056 12.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.7 gi|344212680|ref|YP_004797000.1| - 0.031 13.9 0.0 0.07 12.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|344212680|ref|YP_004797000.1| - 0.054 13.4 0.6 0.28 11.1 0.0 2.4 2 1 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|344212680|ref|YP_004797000.1| - 0.093 13.5 1.2 1.2 10.0 0.0 2.7 2 1 1 3 3 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|344212680|ref|YP_004797000.1| - 0.094 11.3 0.0 0.15 10.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Parvo_NS1 PF01057.12 gi|344212680|ref|YP_004797000.1| - 0.1 11.4 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Abi PF02517.11 gi|344212681|ref|YP_004797001.1| - 4.5e-09 36.3 7.1 4.5e-09 36.3 5.0 2.5 3 0 0 3 3 3 2 CAAX protease self-immunity DNA_binding_1 PF01035.15 gi|344212682|ref|YP_004797002.1| - 9.2e-11 41.3 0.0 1.3e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain GDPD PF03009.12 gi|344212683|ref|YP_004797003.1| - 3.9e-21 75.7 0.0 8.7e-21 74.5 0.0 1.6 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|344212683|ref|YP_004797003.1| - 0.00056 20.0 0.1 0.0014 18.7 0.0 1.7 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family TAT_signal PF10518.4 gi|344212683|ref|YP_004797003.1| - 0.52 10.4 4.3 1.9 8.7 3.0 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DS PF01916.12 gi|344212684|ref|YP_004797004.1| - 2e-78 263.5 0.0 2.3e-78 263.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|344212684|ref|YP_004797004.1| - 7.6e-06 25.6 0.0 1.4e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family Peptidase_M22 PF00814.20 gi|344212684|ref|YP_004797004.1| - 0.062 12.7 0.0 0.09 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycoprotease family AzlC PF03591.9 gi|344212685|ref|YP_004797005.1| - 1.6e-43 148.1 9.2 1.6e-43 148.1 6.4 1.6 2 0 0 2 2 2 1 AzlC protein AzlD PF05437.7 gi|344212686|ref|YP_004797006.1| - 6e-21 74.2 8.3 6.8e-21 74.0 5.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) DUF3917 PF13055.1 gi|344212686|ref|YP_004797006.1| - 0.73 10.1 3.9 9.8 6.5 0.1 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF3917) SprT-like PF10263.4 gi|344212687|ref|YP_004797007.1| - 2.7e-08 33.6 0.7 4.4e-08 32.9 0.5 1.3 1 1 0 1 1 1 1 SprT-like family Tox-MPTase3 PF15639.1 gi|344212687|ref|YP_004797007.1| - 0.051 13.3 0.5 0.11 12.2 0.1 1.6 2 0 0 2 2 2 0 Metallopeptidase toxin 3 DUF4157 PF13699.1 gi|344212687|ref|YP_004797007.1| - 0.23 11.6 1.1 0.44 10.7 0.0 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4157) NIF3 PF01784.13 gi|344212688|ref|YP_004797008.1| - 2.1e-55 187.9 0.0 2.4e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) AP_endonuc_2 PF01261.19 gi|344212688|ref|YP_004797008.1| - 0.019 14.2 0.0 0.033 13.4 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Glyoxalase_4 PF13669.1 gi|344212688|ref|YP_004797008.1| - 0.047 13.7 0.6 0.19 11.7 0.0 2.1 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PGA_cap PF09587.5 gi|344212688|ref|YP_004797008.1| - 0.14 11.4 0.5 0.23 10.7 0.0 1.6 2 0 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap Lar_restr_allev PF14354.1 gi|344212689|ref|YP_004797009.1| - 0.022 15.0 0.3 0.06 13.6 0.2 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Abhydrolase_6 PF12697.2 gi|344212690|ref|YP_004797010.1| - 1.1e-35 123.6 8.0 1.1e-35 123.6 5.5 1.5 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344212690|ref|YP_004797010.1| - 6.8e-17 61.5 0.0 4.8e-16 58.8 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344212690|ref|YP_004797010.1| - 6.8e-13 48.6 0.1 1.2e-11 44.6 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Amidohydro_1 PF01979.15 gi|344212691|ref|YP_004797011.1| - 1.3e-22 80.8 0.4 1.5e-21 77.4 0.3 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|344212691|ref|YP_004797011.1| - 3.3e-10 40.4 13.5 1.4e-09 38.3 9.3 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|344212691|ref|YP_004797011.1| - 2.3e-07 30.5 0.1 4.8e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|344212691|ref|YP_004797011.1| - 1.1e-06 27.8 0.0 1.6e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|344212691|ref|YP_004797011.1| - 3.4e-06 26.5 12.9 7.6e-06 25.3 4.4 2.2 1 1 1 2 2 2 2 Amidohydrolase family Peptidase_U32 PF01136.14 gi|344212691|ref|YP_004797011.1| - 0.059 12.2 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 Peptidase family U32 Arginase PF00491.16 gi|344212692|ref|YP_004797012.1| - 1.1e-58 198.7 2.6 1.2e-58 198.5 1.8 1.0 1 0 0 1 1 1 1 Arginase family IPPT PF01715.12 gi|344212692|ref|YP_004797012.1| - 0.0021 17.1 0.0 0.0033 16.4 0.0 1.2 1 0 0 1 1 1 1 IPP transferase eIF-5a PF01287.15 gi|344212693|ref|YP_004797013.1| - 1.3e-05 25.0 0.7 2.2e-05 24.2 0.5 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|344212693|ref|YP_004797013.1| - 0.004 17.0 0.0 0.029 14.2 0.0 2.0 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain DM13 PF10517.4 gi|344212693|ref|YP_004797013.1| - 0.054 13.8 0.1 0.072 13.4 0.1 1.2 1 0 0 1 1 1 0 Electron transfer DM13 HAD_2 PF13419.1 gi|344212694|ref|YP_004797014.1| - 2.6e-16 60.3 0.1 3.2e-16 60.0 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344212694|ref|YP_004797014.1| - 1e-06 29.3 0.2 2.7e-06 27.9 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344212694|ref|YP_004797014.1| - 0.00029 20.4 0.0 0.0008 19.0 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like CobD_Cbib PF03186.8 gi|344212695|ref|YP_004797015.1| - 5.2e-66 222.7 14.9 6.8e-66 222.3 10.3 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|344212696|ref|YP_004797016.1| - 1.7e-39 135.8 13.1 2.1e-39 135.5 9.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase NTP_transf_3 PF12804.2 gi|344212697|ref|YP_004797017.1| - 1.5e-19 70.6 0.5 1.7e-19 70.4 0.3 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|344212697|ref|YP_004797017.1| - 0.00066 19.2 0.0 0.00083 18.9 0.0 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|344212697|ref|YP_004797017.1| - 0.0026 17.1 0.0 0.0035 16.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|344212697|ref|YP_004797017.1| - 0.024 14.2 0.0 0.14 11.7 0.0 1.9 1 1 0 1 1 1 0 Cytidylyltransferase Aminotran_1_2 PF00155.16 gi|344212698|ref|YP_004797018.1| - 1.1e-38 133.1 0.0 1.3e-38 132.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II CbiZ PF01955.13 gi|344212699|ref|YP_004797019.1| - 9.3e-44 149.5 0.4 1.1e-43 149.3 0.3 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase CobA_CobO_BtuR PF02572.10 gi|344212700|ref|YP_004797020.1| - 1.5e-56 190.6 0.0 1.7e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP UPF0122 PF04297.9 gi|344212702|ref|YP_004797022.1| - 0.0027 17.6 0.1 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_10 PF04967.7 gi|344212702|ref|YP_004797022.1| - 0.062 12.8 0.4 0.66 9.6 0.1 2.4 2 0 0 2 2 2 0 HTH DNA binding domain GATase_3 PF07685.9 gi|344212703|ref|YP_004797023.1| - 2.4e-36 124.7 0.0 3.6e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|344212703|ref|YP_004797023.1| - 1.2e-26 93.3 0.0 1.7e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|344212703|ref|YP_004797023.1| - 5.6e-18 65.2 0.0 1.2e-17 64.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|344212703|ref|YP_004797023.1| - 0.0047 16.6 0.0 0.029 14.0 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|344212703|ref|YP_004797023.1| - 0.35 11.7 1.5 3.2 8.6 1.1 2.3 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|344212704|ref|YP_004797024.1| - 7.2e-26 90.7 0.1 9e-26 90.4 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344212704|ref|YP_004797024.1| - 4.5e-10 39.6 0.0 6.8e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|344212704|ref|YP_004797024.1| - 4.2e-08 32.7 0.0 0.0001 21.5 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|344212704|ref|YP_004797024.1| - 4.7e-05 22.5 2.0 0.00023 20.3 1.4 1.9 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|344212704|ref|YP_004797024.1| - 0.0024 16.9 1.5 0.0032 16.5 0.4 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|344212704|ref|YP_004797024.1| - 0.0081 15.5 0.2 0.015 14.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|344212704|ref|YP_004797024.1| - 0.011 15.3 0.4 0.029 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.6 gi|344212704|ref|YP_004797024.1| - 0.014 14.4 0.2 0.03 13.3 0.1 1.5 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.9 gi|344212704|ref|YP_004797024.1| - 0.017 14.0 0.2 0.027 13.4 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase ParA PF10609.4 gi|344212704|ref|YP_004797024.1| - 0.044 13.6 0.1 0.085 12.7 0.0 1.5 1 0 0 1 1 1 0 ParA/MinD ATPase like AAA_17 PF13207.1 gi|344212704|ref|YP_004797024.1| - 0.05 14.4 0.1 0.13 13.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|344212704|ref|YP_004797024.1| - 0.083 12.2 0.1 0.13 11.5 0.0 1.4 1 1 0 1 1 1 0 YhjQ protein AAA_30 PF13604.1 gi|344212704|ref|YP_004797024.1| - 0.11 12.0 0.9 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain HTH_11 PF08279.7 gi|344212706|ref|YP_004797026.1| - 9.5e-07 28.3 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_CodY PF08222.6 gi|344212706|ref|YP_004797026.1| - 2.7e-05 23.4 0.0 3.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_20 PF12840.2 gi|344212706|ref|YP_004797026.1| - 9.4e-05 22.1 0.0 0.00012 21.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|344212706|ref|YP_004797026.1| - 0.0011 19.1 0.1 0.0065 16.6 0.0 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|344212706|ref|YP_004797026.1| - 0.0037 16.8 0.0 0.0054 16.3 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|344212706|ref|YP_004797026.1| - 0.004 16.4 0.0 0.0066 15.7 0.0 1.5 1 1 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|344212706|ref|YP_004797026.1| - 0.0068 16.0 0.0 0.0087 15.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|344212706|ref|YP_004797026.1| - 0.01 15.6 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain SgrR_N PF12793.2 gi|344212706|ref|YP_004797026.1| - 0.034 14.1 0.0 0.038 14.0 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_30 PF13556.1 gi|344212706|ref|YP_004797026.1| - 0.039 13.5 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_7 PF02796.10 gi|344212706|ref|YP_004797026.1| - 0.047 13.5 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Mga PF08280.6 gi|344212706|ref|YP_004797026.1| - 0.049 13.3 0.1 0.093 12.5 0.0 1.5 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.1 gi|344212706|ref|YP_004797026.1| - 0.058 12.9 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344212706|ref|YP_004797026.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|344212706|ref|YP_004797026.1| - 0.093 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344212707|ref|YP_004797027.1| - 2.8e-07 30.0 0.1 6.9e-07 28.8 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|344212707|ref|YP_004797027.1| - 0.0005 19.6 0.0 0.0013 18.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|344212707|ref|YP_004797027.1| - 0.00075 19.7 0.0 0.0015 18.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|344212707|ref|YP_004797027.1| - 0.00088 19.0 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|344212707|ref|YP_004797027.1| - 0.016 14.8 0.9 0.12 12.0 0.1 2.6 3 0 0 3 3 3 0 Homeodomain-like domain HTH_5 PF01022.15 gi|344212707|ref|YP_004797027.1| - 0.039 13.6 0.0 0.092 12.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|344212707|ref|YP_004797027.1| - 0.14 11.9 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FAD_binding_7 PF03441.9 gi|344212708|ref|YP_004797028.1| - 9.6e-81 271.0 0.0 1.3e-80 270.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|344212708|ref|YP_004797028.1| - 4.5e-19 68.7 0.0 2.1e-18 66.5 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase DUF4407 PF14362.1 gi|344212709|ref|YP_004797029.1| - 0.0068 15.4 1.6 0.0085 15.0 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) CarboxypepD_reg PF13620.1 gi|344212712|ref|YP_004797032.1| - 0.11 12.5 0.3 0.11 12.5 0.2 2.3 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain PilX_N PF14341.1 gi|344212712|ref|YP_004797032.1| - 2.4 7.9 5.6 8 6.2 2.7 2.4 2 1 0 2 2 2 0 PilX N-terminal PetG PF02529.10 gi|344212713|ref|YP_004797033.1| - 0.19 11.2 1.8 0.34 10.4 1.2 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex subunit 5 DUF1628 PF07790.6 gi|344212714|ref|YP_004797034.1| - 0.00013 22.6 0.1 0.00025 21.7 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) TcdB_toxin_midN PF12256.3 gi|344212714|ref|YP_004797034.1| - 0.019 14.4 0.0 0.038 13.4 0.0 1.5 1 0 0 1 1 1 0 Insecticide toxin TcdB middle/N-terminal region FG-GAP_2 PF14312.1 gi|344212714|ref|YP_004797034.1| - 1.8 8.6 7.1 5.7 7.0 0.5 2.7 3 0 0 3 3 3 0 FG-GAP repeat T2SF PF00482.18 gi|344212715|ref|YP_004797035.1| - 1.1e-12 47.9 1.1 8.3e-10 38.6 0.0 2.6 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F Bac_export_2 PF01312.14 gi|344212715|ref|YP_004797035.1| - 0.2 10.4 0.8 0.58 8.9 0.0 1.9 2 0 0 2 2 2 0 FlhB HrpN YscU SpaS Family DEAD PF00270.24 gi|344212716|ref|YP_004797036.1| - 7.7e-16 58.0 0.0 1.7e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_14 PF13173.1 gi|344212716|ref|YP_004797036.1| - 0.00011 22.0 1.6 0.0018 18.1 0.0 3.3 3 1 0 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|344212716|ref|YP_004797036.1| - 0.00034 20.3 1.0 0.00074 19.2 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|344212716|ref|YP_004797036.1| - 0.0004 20.5 0.0 0.0016 18.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.10 gi|344212716|ref|YP_004797036.1| - 0.0033 16.1 0.0 0.0054 15.4 0.0 1.2 1 0 0 1 1 1 1 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|344212716|ref|YP_004797036.1| - 0.0047 16.4 0.2 0.038 13.4 0.1 2.3 1 1 0 1 1 1 1 AAA-like domain T2SE PF00437.15 gi|344212716|ref|YP_004797036.1| - 0.13 11.1 0.1 0.34 9.7 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein SpoVAD PF07451.6 gi|344212716|ref|YP_004797036.1| - 0.14 10.5 0.0 1.7 6.9 0.0 2.1 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) HTH_10 PF04967.7 gi|344212719|ref|YP_004797039.1| - 1.8e-18 65.8 0.1 2.8e-18 65.2 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344212719|ref|YP_004797039.1| - 0.0017 18.0 0.1 0.0048 16.5 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|344212719|ref|YP_004797039.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|344212719|ref|YP_004797039.1| - 0.033 14.1 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like adh_short PF00106.20 gi|344212720|ref|YP_004797040.1| - 2.6e-38 131.5 5.2 3.5e-38 131.1 3.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344212720|ref|YP_004797040.1| - 2.1e-22 80.0 0.1 2.7e-22 79.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344212720|ref|YP_004797040.1| - 4.4e-21 75.3 3.1 5.8e-21 74.9 2.2 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|344212720|ref|YP_004797040.1| - 4.5e-06 26.7 4.9 9e-06 25.8 3.4 1.5 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|344212720|ref|YP_004797040.1| - 4.8e-06 26.1 0.4 1.9e-05 24.1 0.1 2.0 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|344212720|ref|YP_004797040.1| - 0.0057 16.4 1.4 0.016 15.0 0.9 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HEM4 PF02602.10 gi|344212720|ref|YP_004797040.1| - 0.0068 15.6 0.3 0.014 14.6 0.2 1.6 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD THF_DHG_CYH_C PF02882.14 gi|344212720|ref|YP_004797040.1| - 0.024 13.7 0.0 0.045 12.8 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HHH_5 PF14520.1 gi|344212720|ref|YP_004797040.1| - 0.035 14.2 3.2 0.11 12.7 2.2 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain ApbA PF02558.11 gi|344212720|ref|YP_004797040.1| - 0.093 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PSK_trans_fac PF07704.6 gi|344212720|ref|YP_004797040.1| - 0.83 10.3 4.6 0.69 10.6 1.2 2.2 2 1 0 2 2 2 0 Rv0623-like transcription factor DAO PF01266.19 gi|344212721|ref|YP_004797041.1| - 3.3e-62 210.4 5.6 3.9e-62 210.2 3.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344212721|ref|YP_004797041.1| - 6.8e-13 48.3 0.2 9.2e-13 47.9 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|344212721|ref|YP_004797041.1| - 3.1e-12 46.0 5.5 3.1e-12 46.0 3.8 1.4 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|344212721|ref|YP_004797041.1| - 7.5e-08 32.4 0.5 0.00079 19.3 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344212721|ref|YP_004797041.1| - 5.8e-07 28.9 7.3 1.2e-06 27.9 5.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344212721|ref|YP_004797041.1| - 2.1e-05 23.7 2.5 0.0097 15.0 0.4 2.5 2 1 0 2 2 2 2 Thi4 family 3HCDH_N PF02737.13 gi|344212721|ref|YP_004797041.1| - 0.00091 18.9 0.3 0.002 17.8 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|344212721|ref|YP_004797041.1| - 0.001 19.2 0.1 0.0053 16.9 0.0 2.1 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|344212721|ref|YP_004797041.1| - 0.0016 18.5 0.2 0.52 10.3 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|344212721|ref|YP_004797041.1| - 0.0016 18.7 0.6 0.008 16.5 0.6 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|344212721|ref|YP_004797041.1| - 0.0022 17.9 2.9 0.007 16.3 1.8 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344212721|ref|YP_004797041.1| - 0.0029 16.1 0.6 0.32 9.4 0.3 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|344212721|ref|YP_004797041.1| - 0.003 16.5 2.1 0.4 9.5 0.6 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A ApbA PF02558.11 gi|344212721|ref|YP_004797041.1| - 0.017 14.5 0.4 0.03 13.7 0.3 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.7 gi|344212721|ref|YP_004797041.1| - 0.055 12.3 2.8 0.86 8.4 0.6 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|344212721|ref|YP_004797041.1| - 0.078 11.5 1.8 3 6.3 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_10 PF13460.1 gi|344212721|ref|YP_004797041.1| - 0.1 12.5 5.7 0.26 11.2 1.0 2.7 2 1 0 2 2 2 0 NADH(P)-binding THF_DHG_CYH PF00763.18 gi|344212721|ref|YP_004797041.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NAD_binding_9 PF13454.1 gi|344212721|ref|YP_004797041.1| - 0.46 10.2 3.0 5 6.8 0.4 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding ThiF PF00899.16 gi|344212721|ref|YP_004797041.1| - 0.59 9.9 2.9 0.84 9.4 1.1 1.9 2 0 0 2 2 1 0 ThiF family PALP PF00291.20 gi|344212721|ref|YP_004797041.1| - 0.65 9.1 3.5 0.6 9.2 0.2 2.0 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme IF-2B PF01008.12 gi|344212722|ref|YP_004797042.1| - 1.4e-43 148.9 0.0 2e-43 148.3 0.0 1.2 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.17 gi|344212722|ref|YP_004797042.1| - 0.03 13.9 0.2 0.11 12.1 0.1 2.0 1 1 1 2 2 2 0 DeoR C terminal sensor domain FlgN PF05130.7 gi|344212722|ref|YP_004797042.1| - 0.32 11.2 4.4 2 8.6 0.2 2.2 1 1 1 2 2 2 0 FlgN protein DUF883 PF05957.8 gi|344212722|ref|YP_004797042.1| - 2.4 8.5 8.2 0.58 10.6 1.3 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Glyco_hydro_77 PF02446.12 gi|344212723|ref|YP_004797043.1| - 4.2e-137 457.7 0.0 5e-137 457.4 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Glycos_transf_1 PF00534.15 gi|344212724|ref|YP_004797044.1| - 2e-27 95.7 0.0 3.3e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|344212724|ref|YP_004797044.1| - 3e-17 63.0 0.0 5.6e-16 58.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|344212724|ref|YP_004797044.1| - 3.8e-10 40.1 0.0 6.8e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344212724|ref|YP_004797044.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|344212724|ref|YP_004797044.1| - 0.033 13.6 0.0 0.48 9.8 0.0 2.4 1 1 1 2 2 2 0 Starch synthase catalytic domain DUF3682 PF12446.3 gi|344212725|ref|YP_004797045.1| - 0.087 13.1 0.2 0.1 12.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3682) NTP_transferase PF00483.18 gi|344212726|ref|YP_004797046.1| - 9.7e-37 126.5 0.0 1.3e-36 126.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|344212726|ref|YP_004797046.1| - 5e-09 36.4 0.0 6.2e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|344212726|ref|YP_004797046.1| - 0.0063 15.9 1.5 0.12 11.9 0.0 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Glyco_hydro_15 PF00723.16 gi|344212727|ref|YP_004797047.1| - 1.1e-36 126.4 2.6 3.7e-22 78.5 0.0 5.1 3 2 1 4 4 4 4 Glycosyl hydrolases family 15 Glucodextran_N PF09137.6 gi|344212727|ref|YP_004797047.1| - 1.2e-34 119.8 0.5 2.2e-33 115.6 0.3 2.2 1 1 0 1 1 1 1 Glucodextranase, domain N Alpha-amylase PF00128.19 gi|344212728|ref|YP_004797048.1| - 2.5e-48 165.1 0.0 6.5e-47 160.4 0.0 2.3 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_C PF02806.13 gi|344212728|ref|YP_004797048.1| - 0.00055 20.0 0.1 0.014 15.4 0.0 2.7 2 0 0 2 2 2 1 Alpha amylase, C-terminal all-beta domain DUF3459 PF11941.3 gi|344212728|ref|YP_004797048.1| - 0.0059 16.6 0.4 0.029 14.4 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Glyco_hydro_42C PF08533.5 gi|344212728|ref|YP_004797048.1| - 0.011 15.2 0.0 0.041 13.3 0.0 2.1 2 0 0 2 2 2 0 Beta-galactosidase C-terminal domain Radical_SAM PF04055.16 gi|344212728|ref|YP_004797048.1| - 0.015 15.4 0.0 1.2 9.2 0.0 2.4 2 1 0 2 2 2 0 Radical SAM superfamily Polysacc_synt_C PF14667.1 gi|344212729|ref|YP_004797049.1| - 0.36 10.6 10.2 1 9.1 7.1 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain IclR PF01614.13 gi|344212730|ref|YP_004797050.1| - 6.3e-30 103.5 0.2 8.7e-30 103.0 0.1 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344212730|ref|YP_004797050.1| - 9.9e-06 25.0 0.0 3.3e-05 23.3 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|344212730|ref|YP_004797050.1| - 6.9e-05 22.5 0.0 0.00021 21.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|344212730|ref|YP_004797050.1| - 0.00061 19.4 0.3 0.0036 16.9 0.0 2.3 3 0 0 3 3 3 1 MarR family TrmB PF01978.14 gi|344212730|ref|YP_004797050.1| - 0.00079 19.0 0.0 0.0017 17.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344212730|ref|YP_004797050.1| - 0.00093 18.8 0.1 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344212730|ref|YP_004797050.1| - 0.015 14.9 0.1 0.06 13.0 0.0 2.0 2 0 0 2 2 2 0 MarR family PadR PF03551.9 gi|344212730|ref|YP_004797050.1| - 0.026 14.3 0.0 0.062 13.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Fe_dep_repress PF01325.14 gi|344212730|ref|YP_004797050.1| - 0.074 13.0 0.1 3.2 7.7 0.0 2.7 2 1 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|344212730|ref|YP_004797050.1| - 0.082 12.5 0.0 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain HpcH_HpaI PF03328.9 gi|344212731|ref|YP_004797051.1| - 6.3e-09 35.0 0.0 1.3e-08 34.0 0.0 1.7 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Glyoxalase_2 PF12681.2 gi|344212732|ref|YP_004797052.1| - 2.6e-15 56.9 0.7 3e-15 56.7 0.5 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344212732|ref|YP_004797052.1| - 1.5e-14 54.0 0.7 1.8e-14 53.8 0.5 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|344212732|ref|YP_004797052.1| - 1.2e-11 44.5 0.4 2.3e-09 37.2 0.2 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|344212732|ref|YP_004797052.1| - 0.004 17.0 0.9 0.013 15.4 0.3 1.8 1 1 0 2 2 2 1 Glyoxalase-like domain FAD-oxidase_C PF02913.14 gi|344212733|ref|YP_004797053.1| - 1.9e-57 194.4 0.5 3.9e-57 193.4 0.3 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|344212733|ref|YP_004797053.1| - 2.4e-37 127.4 0.5 4.9e-37 126.5 0.3 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|344212733|ref|YP_004797053.1| - 2e-09 37.6 4.1 3.7e-09 36.8 2.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|344212733|ref|YP_004797053.1| - 6.1e-09 35.7 5.1 1.3e-08 34.7 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|344212733|ref|YP_004797053.1| - 9.7e-08 31.9 0.0 2.4e-05 24.2 0.0 2.9 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|344212733|ref|YP_004797053.1| - 1.6e-06 28.3 2.1 1.2e-05 25.5 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344212733|ref|YP_004797053.1| - 0.001 19.4 4.8 0.0023 18.2 3.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344212733|ref|YP_004797053.1| - 0.0049 16.6 4.5 0.037 13.8 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344212733|ref|YP_004797053.1| - 0.026 14.3 9.7 0.27 11.0 1.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344212733|ref|YP_004797053.1| - 0.038 13.6 13.2 0.23 11.1 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|344212733|ref|YP_004797053.1| - 0.047 13.6 10.0 1.1 9.3 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|344212733|ref|YP_004797053.1| - 0.068 13.7 3.4 7.1 7.2 0.2 3.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|344212733|ref|YP_004797053.1| - 0.08 13.2 10.9 0.077 13.2 1.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|344212733|ref|YP_004797053.1| - 0.79 10.2 12.2 0.96 9.9 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2088 PF09861.4 gi|344212734|ref|YP_004797054.1| - 4e-05 22.7 0.1 7.6e-05 21.8 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) DUF362 PF04015.7 gi|344212734|ref|YP_004797054.1| - 0.011 15.2 0.1 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF362) Beta-lactamase PF00144.19 gi|344212735|ref|YP_004797055.1| - 8.7e-74 248.4 2.8 1.1e-73 248.1 1.9 1.0 1 0 0 1 1 1 1 Beta-lactamase IclR PF01614.13 gi|344212736|ref|YP_004797056.1| - 1.1e-32 112.4 0.0 1.8e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344212736|ref|YP_004797056.1| - 3.6e-09 36.0 0.0 7.9e-09 34.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|344212736|ref|YP_004797056.1| - 7.4e-09 35.2 0.2 1.5e-07 31.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344212736|ref|YP_004797056.1| - 6.6e-07 28.6 0.0 1.9e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344212736|ref|YP_004797056.1| - 6.7e-07 28.8 0.0 4.3e-06 26.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344212736|ref|YP_004797056.1| - 7.1e-07 28.7 0.1 2.4e-06 27.0 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|344212736|ref|YP_004797056.1| - 5e-06 26.7 0.6 0.0011 19.1 0.1 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|344212736|ref|YP_004797056.1| - 4.6e-05 23.0 0.0 9.9e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344212736|ref|YP_004797056.1| - 0.00011 21.7 0.0 0.00026 20.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|344212736|ref|YP_004797056.1| - 0.0021 17.6 0.0 0.016 14.8 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_34 PF13601.1 gi|344212736|ref|YP_004797056.1| - 0.0036 17.3 0.0 0.037 14.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|344212736|ref|YP_004797056.1| - 0.0061 16.1 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.1 gi|344212736|ref|YP_004797056.1| - 0.0062 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_40 PF14493.1 gi|344212736|ref|YP_004797056.1| - 0.01 16.0 0.0 0.026 14.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|344212736|ref|YP_004797056.1| - 0.018 14.9 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase SMC_Nse1 PF07574.8 gi|344212736|ref|YP_004797056.1| - 0.022 14.3 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex HTH_38 PF13936.1 gi|344212736|ref|YP_004797056.1| - 0.047 13.2 0.1 0.11 12.0 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|344212736|ref|YP_004797056.1| - 0.071 12.7 1.4 0.24 11.0 0.1 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family Acyl-CoA_dh_1 PF00441.19 gi|344212737|ref|YP_004797057.1| - 1.8e-29 102.7 0.3 2.7e-29 102.2 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344212737|ref|YP_004797057.1| - 1.4e-23 83.6 0.0 3.1e-23 82.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344212737|ref|YP_004797057.1| - 5.2e-22 77.1 0.1 1.1e-21 76.0 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|344212737|ref|YP_004797057.1| - 6e-09 36.2 0.3 8.9e-09 35.7 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|344212737|ref|YP_004797057.1| - 0.00098 18.5 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal Aldedh PF00171.17 gi|344212738|ref|YP_004797058.1| - 1.3e-159 531.4 0.3 1.5e-159 531.2 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Topo_Zn_Ribbon PF08272.6 gi|344212738|ref|YP_004797058.1| - 0.011 15.1 0.1 0.026 13.8 0.0 1.6 1 0 0 1 1 1 0 Topoisomerase I zinc-ribbon-like AMP-binding PF00501.23 gi|344212739|ref|YP_004797059.1| - 6.1e-90 301.5 0.0 7.4e-90 301.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344212739|ref|YP_004797059.1| - 3.4e-17 63.1 0.5 9.3e-17 61.7 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Saccharop_dh PF03435.13 gi|344212739|ref|YP_004797059.1| - 0.0049 15.8 0.0 0.012 14.5 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase ECH PF00378.15 gi|344212740|ref|YP_004797060.1| - 2.7e-49 167.5 0.1 3e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|344212740|ref|YP_004797060.1| - 0.004 17.2 0.0 0.021 14.9 0.0 2.0 3 0 0 3 3 3 1 2-enoyl-CoA Hydratase C-terminal region APH PF01636.18 gi|344212741|ref|YP_004797061.1| - 5.8e-42 144.0 7.0 7.9e-42 143.6 4.8 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|344212741|ref|YP_004797061.1| - 7.4e-05 22.0 0.0 0.00011 21.4 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1679 PF07914.6 gi|344212741|ref|YP_004797061.1| - 0.041 12.5 0.0 0.059 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1679) 3HCDH_N PF02737.13 gi|344212742|ref|YP_004797062.1| - 4.4e-65 218.6 0.1 7.7e-65 217.9 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|344212742|ref|YP_004797062.1| - 7.4e-56 188.9 0.0 1.1e-55 188.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|344212742|ref|YP_004797062.1| - 2.2e-44 149.7 1.2 2.7e-22 78.9 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|344212742|ref|YP_004797062.1| - 4.5e-06 26.4 0.0 7.7e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|344212742|ref|YP_004797062.1| - 0.00095 19.0 0.0 0.0024 17.7 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ECH_C PF13766.1 gi|344212742|ref|YP_004797062.1| - 0.0012 18.9 0.0 0.0028 17.7 0.0 1.6 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region F420_oxidored PF03807.12 gi|344212742|ref|YP_004797062.1| - 0.011 16.1 0.3 0.034 14.5 0.2 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|344212742|ref|YP_004797062.1| - 0.082 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|344212743|ref|YP_004797063.1| - 5.8e-37 127.0 4.3 5.8e-37 127.0 3.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344212743|ref|YP_004797063.1| - 7.1e-19 67.0 0.1 1.4e-18 66.1 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|344212743|ref|YP_004797063.1| - 1.4e-16 60.9 6.1 1.4e-16 60.9 4.2 2.4 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344212743|ref|YP_004797063.1| - 4.6e-12 46.5 0.2 4.6e-12 46.5 0.2 2.4 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|344212743|ref|YP_004797063.1| - 0.009 15.4 0.0 0.039 13.3 0.0 2.0 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.1 gi|344212744|ref|YP_004797064.1| - 1.2e-23 84.2 0.1 1.5e-23 83.9 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344212744|ref|YP_004797064.1| - 1.3e-11 43.9 0.2 2.9e-11 42.8 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|344212744|ref|YP_004797064.1| - 2.1e-06 28.3 0.0 7.3e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Metal_resist PF13801.1 gi|344212744|ref|YP_004797064.1| - 0.68 9.9 5.2 1 9.3 0.2 2.9 3 0 0 3 3 3 0 Heavy-metal resistance adh_short PF00106.20 gi|344212745|ref|YP_004797065.1| - 7.9e-39 133.2 2.5 1.1e-38 132.7 1.7 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|344212745|ref|YP_004797065.1| - 6.2e-29 101.4 0.1 8.2e-29 101.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|344212745|ref|YP_004797065.1| - 1.6e-15 57.2 0.9 2.5e-15 56.6 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|344212745|ref|YP_004797065.1| - 2.6e-06 27.0 0.1 3.7e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|344212745|ref|YP_004797065.1| - 4.4e-06 26.8 0.7 7.2e-06 26.1 0.5 1.4 1 0 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|344212745|ref|YP_004797065.1| - 0.00052 19.7 0.0 0.0011 18.6 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Saccharop_dh PF03435.13 gi|344212745|ref|YP_004797065.1| - 0.001 18.1 0.1 0.0024 16.9 0.2 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase FTR PF01913.13 gi|344212745|ref|YP_004797065.1| - 0.0013 18.5 0.1 0.002 17.8 0.1 1.3 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase RmlD_sub_bind PF04321.12 gi|344212745|ref|YP_004797065.1| - 0.0024 16.8 0.1 0.0041 16.0 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain THF_DHG_CYH_C PF02882.14 gi|344212745|ref|YP_004797065.1| - 0.0038 16.3 0.0 0.01 14.9 0.0 1.7 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.12 gi|344212745|ref|YP_004797065.1| - 0.0079 16.6 0.2 0.016 15.6 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3Beta_HSD PF01073.14 gi|344212745|ref|YP_004797065.1| - 0.0093 14.6 0.3 0.013 14.2 0.2 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|344212745|ref|YP_004797065.1| - 0.051 13.5 0.3 0.083 12.8 0.2 1.3 1 0 0 1 1 1 0 TrkA-N domain Polysacc_synt_2 PF02719.10 gi|344212745|ref|YP_004797065.1| - 0.056 12.3 0.0 0.082 11.7 0.0 1.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Shikimate_DH PF01488.15 gi|344212745|ref|YP_004797065.1| - 0.066 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase DFP PF04127.10 gi|344212745|ref|YP_004797065.1| - 0.098 12.2 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein MaoC_dehydratas PF01575.14 gi|344212746|ref|YP_004797066.1| - 1.2e-26 92.4 0.6 1.4e-26 92.2 0.4 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344212746|ref|YP_004797066.1| - 8.2e-08 32.1 0.8 1.1e-07 31.7 0.6 1.1 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|344212746|ref|YP_004797066.1| - 0.0051 16.9 0.1 0.012 15.6 0.1 1.7 1 1 0 1 1 1 1 Thioesterase superfamily FabA PF07977.8 gi|344212746|ref|YP_004797066.1| - 0.039 13.4 0.0 0.054 12.9 0.0 1.2 1 0 0 1 1 1 0 FabA-like domain Acyl-CoA_dh_1 PF00441.19 gi|344212747|ref|YP_004797067.1| - 5.3e-55 185.6 2.9 9.4e-55 184.8 2.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344212747|ref|YP_004797067.1| - 1.4e-26 93.2 0.5 1.4e-26 93.2 0.3 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|344212747|ref|YP_004797067.1| - 9.8e-25 87.3 6.7 1.9e-24 86.4 4.6 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344212747|ref|YP_004797067.1| - 1.7e-21 75.4 0.6 3.5e-21 74.4 0.4 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|344212747|ref|YP_004797067.1| - 6.1e-05 22.5 2.0 0.00016 21.1 0.1 2.3 2 1 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|344212747|ref|YP_004797067.1| - 0.021 13.6 1.1 0.084 11.7 0.1 2.0 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Peripla_BP_6 PF13458.1 gi|344212748|ref|YP_004797068.1| - 4.4e-43 147.9 9.9 5.6e-43 147.6 6.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|344212748|ref|YP_004797068.1| - 2.2e-23 82.6 1.9 4.3e-23 81.6 1.4 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|344212748|ref|YP_004797068.1| - 5.5e-19 68.1 0.6 1.8e-18 66.4 0.4 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|344212748|ref|YP_004797068.1| - 0.0013 18.6 2.7 0.0041 17.0 1.9 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.11 gi|344212749|ref|YP_004797069.1| - 7.5e-31 107.0 46.1 8.8e-31 106.8 32.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|344212750|ref|YP_004797070.1| - 1.1e-32 113.0 26.6 1.8e-32 112.3 18.5 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|344212751|ref|YP_004797071.1| - 5.4e-28 97.9 0.0 7.5e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212751|ref|YP_004797071.1| - 2.2e-10 41.0 0.1 0.00014 21.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|344212751|ref|YP_004797071.1| - 1.4e-06 27.8 0.2 2.5e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|344212751|ref|YP_004797071.1| - 0.00018 21.9 0.7 0.00035 20.9 0.4 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344212751|ref|YP_004797071.1| - 0.0015 18.0 0.2 0.0026 17.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|344212751|ref|YP_004797071.1| - 0.0021 17.3 0.7 0.037 13.2 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|344212751|ref|YP_004797071.1| - 0.008 15.6 0.3 0.11 11.9 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|344212751|ref|YP_004797071.1| - 0.022 14.1 0.2 0.6 9.5 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_15 PF13175.1 gi|344212751|ref|YP_004797071.1| - 0.038 13.0 0.1 1.2 8.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|344212751|ref|YP_004797071.1| - 0.041 13.6 0.1 0.18 11.5 0.0 2.1 1 1 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|344212751|ref|YP_004797071.1| - 0.053 13.6 0.7 0.53 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|344212751|ref|YP_004797071.1| - 0.078 13.1 0.1 0.48 10.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|344212751|ref|YP_004797071.1| - 0.079 12.1 0.2 0.18 10.9 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|344212751|ref|YP_004797071.1| - 0.098 12.5 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|344212751|ref|YP_004797071.1| - 0.11 12.4 0.8 0.28 11.1 0.6 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|344212751|ref|YP_004797071.1| - 0.12 12.2 0.0 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|344212752|ref|YP_004797072.1| - 1.7e-29 102.8 0.0 2.6e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212752|ref|YP_004797072.1| - 7.3e-12 45.8 0.0 1.4e-06 28.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344212752|ref|YP_004797072.1| - 3e-06 26.6 0.1 6.7e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|344212752|ref|YP_004797072.1| - 5.2e-05 22.5 0.2 0.0015 17.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|344212752|ref|YP_004797072.1| - 5.3e-05 23.6 0.2 0.00012 22.4 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344212752|ref|YP_004797072.1| - 0.0002 20.8 0.1 0.00039 19.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344212752|ref|YP_004797072.1| - 0.0016 19.2 0.1 0.0046 17.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344212752|ref|YP_004797072.1| - 0.0044 17.1 0.1 0.019 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344212752|ref|YP_004797072.1| - 0.013 15.5 0.1 0.024 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|344212752|ref|YP_004797072.1| - 0.015 14.8 0.1 0.046 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|344212752|ref|YP_004797072.1| - 0.02 13.9 0.0 0.045 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|344212752|ref|YP_004797072.1| - 0.021 14.5 0.4 0.3 10.8 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain ABC_ATPase PF09818.4 gi|344212752|ref|YP_004797072.1| - 0.028 12.9 0.2 0.28 9.6 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|344212752|ref|YP_004797072.1| - 0.045 13.6 0.4 0.47 10.4 0.3 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|344212752|ref|YP_004797072.1| - 0.048 13.8 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|344212752|ref|YP_004797072.1| - 0.088 12.7 0.0 0.63 9.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|344212752|ref|YP_004797072.1| - 0.11 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|344212752|ref|YP_004797072.1| - 0.12 11.4 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Aldo_ket_red PF00248.16 gi|344212754|ref|YP_004797074.1| - 1e-61 208.2 0.0 1.2e-61 208.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DZR PF12773.2 gi|344212755|ref|YP_004797075.1| - 0.006 16.3 0.5 0.008 15.9 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|344212755|ref|YP_004797075.1| - 0.0078 15.8 0.7 0.0088 15.7 0.2 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|344212755|ref|YP_004797075.1| - 0.018 14.8 0.3 0.024 14.3 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons TFIIS_C PF01096.13 gi|344212755|ref|YP_004797075.1| - 0.036 13.6 0.5 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|344212755|ref|YP_004797075.1| - 0.04 13.1 1.5 0.078 12.2 1.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344212755|ref|YP_004797075.1| - 0.062 13.2 1.4 1.2 9.1 1.0 2.2 1 1 0 1 1 1 0 Zinc ribbon domain FdhE PF04216.7 gi|344212755|ref|YP_004797075.1| - 0.063 12.9 0.2 0.064 12.9 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-C2H2_6 PF13912.1 gi|344212755|ref|YP_004797075.1| - 0.069 13.0 2.7 0.69 9.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.5 gi|344212755|ref|YP_004797075.1| - 0.071 12.5 1.7 7 6.2 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.1 gi|344212755|ref|YP_004797075.1| - 0.074 12.8 0.4 0.1 12.3 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-Sec23_Sec24 PF04810.10 gi|344212755|ref|YP_004797075.1| - 0.099 12.2 1.0 1.3 8.6 0.0 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_6 PF14599.1 gi|344212755|ref|YP_004797075.1| - 0.11 12.3 0.7 0.16 11.8 0.5 1.3 1 0 0 1 1 1 0 Zinc-ribbon zf-C2H2 PF00096.21 gi|344212755|ref|YP_004797075.1| - 0.12 12.7 3.0 6.7 7.2 0.1 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type ADK_lid PF05191.9 gi|344212755|ref|YP_004797075.1| - 0.27 10.9 3.2 6.3 6.5 0.1 2.2 1 1 1 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|344212755|ref|YP_004797075.1| - 0.91 8.8 3.0 7.6 5.9 0.3 2.5 2 1 1 3 3 3 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|344212755|ref|YP_004797075.1| - 2.3 8.2 6.3 1.7 8.7 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Aminotran_5 PF00266.14 gi|344212756|ref|YP_004797076.1| - 2.9e-34 118.4 0.0 3.4e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|344212756|ref|YP_004797076.1| - 0.00013 20.4 0.0 0.00018 19.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|344212756|ref|YP_004797076.1| - 0.00039 19.5 0.5 0.00064 18.8 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.14 gi|344212756|ref|YP_004797076.1| - 0.0048 16.7 0.1 0.016 15.0 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain Phage_integrase PF00589.17 gi|344212757|ref|YP_004797077.1| - 2e-18 66.6 0.0 5.4e-18 65.2 0.0 1.6 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|344212757|ref|YP_004797077.1| - 1e-05 25.5 1.0 2.3e-05 24.4 0.1 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|344212757|ref|YP_004797077.1| - 0.00054 20.2 0.0 0.0017 18.6 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Sigma70_r3 PF04539.11 gi|344212758|ref|YP_004797078.1| - 0.013 15.3 0.8 0.021 14.7 0.2 1.5 1 1 0 1 1 1 0 Sigma-70 region 3 HTH_17 PF12728.2 gi|344212758|ref|YP_004797078.1| - 0.022 14.9 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_13 PF11972.3 gi|344212758|ref|YP_004797078.1| - 0.05 13.4 0.0 0.17 11.7 0.0 1.7 1 1 1 2 2 2 0 HTH DNA binding domain DUF3791 PF12668.2 gi|344212758|ref|YP_004797078.1| - 0.077 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) TetR_N PF00440.18 gi|344212758|ref|YP_004797078.1| - 0.089 12.4 0.3 0.17 11.5 0.1 1.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, tetR family Sigma70_r4 PF04545.11 gi|344212758|ref|YP_004797078.1| - 0.14 11.4 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|344212758|ref|YP_004797078.1| - 0.14 11.6 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Maf_N PF08383.6 gi|344212758|ref|YP_004797078.1| - 0.46 10.0 4.2 4.5 6.8 0.4 2.3 2 1 0 2 2 2 0 Maf N-terminal region Myosin_N PF02736.14 gi|344212760|ref|YP_004797080.1| - 1.9 8.2 6.9 3.4 7.4 0.9 2.8 1 1 0 2 2 2 0 Myosin N-terminal SH3-like domain Rib PF08428.5 gi|344212760|ref|YP_004797080.1| - 2.6 7.8 7.5 21 4.9 0.3 2.6 1 1 1 2 2 2 0 Rib/alpha-like repeat DZR PF12773.2 gi|344212761|ref|YP_004797081.1| - 2.2e-12 46.5 41.0 4.6e-07 29.5 6.9 2.0 1 1 3 4 4 4 4 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344212761|ref|YP_004797081.1| - 5.5e-08 31.7 12.5 5.3e-06 25.4 2.5 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|344212761|ref|YP_004797081.1| - 6.2e-05 22.3 12.5 0.093 12.2 0.2 2.9 2 1 1 3 3 3 3 zinc-ribbon domain RHH_1 PF01402.16 gi|344212761|ref|YP_004797081.1| - 7.8e-05 22.3 1.1 0.014 15.2 0.0 3.3 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family Prok-RING_1 PF14446.1 gi|344212761|ref|YP_004797081.1| - 0.0022 17.6 1.8 0.0022 17.6 1.2 2.2 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|344212761|ref|YP_004797081.1| - 0.0068 16.0 12.1 1.2 8.8 1.2 3.6 3 1 0 3 3 3 2 Nudix N-terminal Cys_rich_KTR PF14205.1 gi|344212761|ref|YP_004797081.1| - 0.0097 15.3 1.2 0.84 9.1 0.1 2.4 2 0 0 2 2 2 1 Cysteine-rich KTR DUF2191 PF09957.4 gi|344212761|ref|YP_004797081.1| - 0.015 15.1 0.2 0.047 13.5 0.2 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF1902 PF08972.6 gi|344212761|ref|YP_004797081.1| - 0.026 14.0 0.2 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) zf-NADH-PPase PF09297.6 gi|344212761|ref|YP_004797081.1| - 0.12 11.9 13.7 0.43 10.1 0.1 3.7 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|344212761|ref|YP_004797081.1| - 0.13 11.7 5.6 0.23 10.9 3.9 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain PolC_DP2 PF03833.8 gi|344212761|ref|YP_004797081.1| - 0.15 9.7 5.2 0.2 9.3 3.6 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF2413 PF10310.4 gi|344212761|ref|YP_004797081.1| - 0.19 10.4 4.6 0.22 10.2 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2413) zf-C3HC4_3 PF13920.1 gi|344212761|ref|YP_004797081.1| - 0.22 11.1 5.4 0.22 11.2 0.5 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.1 gi|344212761|ref|YP_004797081.1| - 0.3 10.8 0.3 0.3 10.8 0.2 3.2 4 0 0 4 4 4 0 YhfH-like protein Zn-ribbon_8 PF09723.5 gi|344212761|ref|YP_004797081.1| - 0.37 10.7 10.7 3.3 7.7 2.2 3.5 2 1 1 3 3 3 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|344212761|ref|YP_004797081.1| - 0.43 10.4 8.0 0.12 12.1 2.7 1.9 1 1 1 2 2 2 0 zinc-ribbons NinF PF05810.7 gi|344212761|ref|YP_004797081.1| - 1.3 8.8 5.6 0.81 9.5 1.9 2.0 1 1 0 2 2 2 0 NinF protein zf-UBR PF02207.15 gi|344212761|ref|YP_004797081.1| - 1.6 8.5 8.3 3.6 7.3 5.8 1.6 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Sgf11 PF08209.6 gi|344212761|ref|YP_004797081.1| - 2.6 7.4 6.7 2 7.7 0.1 2.9 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.17 gi|344212761|ref|YP_004797081.1| - 2.7 7.8 8.0 0.98 9.2 3.2 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RHH_1 PF01402.16 gi|344212763|ref|YP_004797083.1| - 3.7e-08 32.9 0.2 6e-08 32.2 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|344212763|ref|YP_004797083.1| - 0.015 15.4 0.2 0.016 15.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) CHASE3 PF05227.8 gi|344212763|ref|YP_004797083.1| - 0.16 11.6 1.2 0.17 11.5 0.8 1.1 1 0 0 1 1 1 0 CHASE3 domain FtsZ_C PF12327.3 gi|344212764|ref|YP_004797084.1| - 7.5e-36 122.1 0.7 7.5e-36 122.1 0.5 2.8 2 1 0 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|344212764|ref|YP_004797084.1| - 4.2e-33 114.9 2.7 2.3e-32 112.5 1.9 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|344212764|ref|YP_004797084.1| - 0.01 15.6 0.1 0.057 13.2 0.0 2.2 2 0 0 2 2 2 0 ThiF family ATP_bind_3 PF01171.15 gi|344212765|ref|YP_004797085.1| - 3.4e-14 52.7 0.0 5.1e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.11 gi|344212765|ref|YP_004797085.1| - 0.00013 20.6 0.0 0.00017 20.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|344212765|ref|YP_004797085.1| - 0.00075 18.4 0.0 0.0012 17.7 0.0 1.3 1 0 0 1 1 1 1 NAD synthase DUF2392 PF10288.4 gi|344212765|ref|YP_004797085.1| - 0.00092 19.5 0.0 0.0045 17.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2392) PAPS_reduct PF01507.14 gi|344212765|ref|YP_004797085.1| - 0.0013 18.6 0.0 0.0027 17.5 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|344212765|ref|YP_004797085.1| - 0.01 15.3 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase QueC PF06508.8 gi|344212765|ref|YP_004797085.1| - 0.041 13.1 0.3 0.26 10.5 0.0 2.3 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Lar_restr_allev PF14354.1 gi|344212765|ref|YP_004797085.1| - 0.84 9.9 5.5 59 4.0 0.1 3.5 3 0 0 3 3 3 0 Restriction alleviation protein Lar RecR PF02132.10 gi|344212765|ref|YP_004797085.1| - 1.2 8.6 7.5 0.3 10.5 1.2 3.0 4 0 0 4 4 4 0 RecR protein DZR PF12773.2 gi|344212765|ref|YP_004797085.1| - 2.9 7.7 9.7 1.2 9.0 0.7 3.3 3 0 0 3 3 3 0 Double zinc ribbon Abhydrolase_5 PF12695.2 gi|344212766|ref|YP_004797086.1| - 5e-09 36.0 0.1 6.3e-09 35.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|344212766|ref|YP_004797086.1| - 1.9e-07 31.2 3.9 2.5e-07 30.8 2.7 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.8 gi|344212766|ref|YP_004797086.1| - 0.0079 15.8 0.2 0.01 15.4 0.1 1.3 1 1 0 1 1 1 1 Serine hydrolase DUF2332 PF10094.4 gi|344212767|ref|YP_004797087.1| - 2.2e-104 349.1 1.5 2.5e-104 348.9 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) NAD_binding_8 PF13450.1 gi|344212768|ref|YP_004797088.1| - 4.8e-13 48.9 6.5 8e-13 48.2 2.7 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|344212768|ref|YP_004797088.1| - 3.1e-09 36.4 5.3 0.00035 19.7 0.1 2.6 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|344212768|ref|YP_004797088.1| - 4.2e-07 29.1 10.2 5.1e-06 25.6 7.0 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|344212768|ref|YP_004797088.1| - 1.9e-06 27.0 1.5 1.9e-06 27.0 1.0 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|344212768|ref|YP_004797088.1| - 2.4e-05 24.4 3.0 0.0014 18.7 1.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|344212768|ref|YP_004797088.1| - 3.9e-05 22.3 1.5 0.0011 17.5 0.8 2.5 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|344212768|ref|YP_004797088.1| - 0.00012 21.2 0.4 0.00021 20.4 0.3 1.3 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|344212768|ref|YP_004797088.1| - 0.00016 21.5 0.1 0.00032 20.6 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|344212768|ref|YP_004797088.1| - 0.00036 19.6 1.0 0.00062 18.9 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|344212768|ref|YP_004797088.1| - 0.00053 19.1 0.9 0.0009 18.4 0.6 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|344212768|ref|YP_004797088.1| - 0.016 14.0 1.6 0.023 13.5 1.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|344212768|ref|YP_004797088.1| - 0.017 14.0 0.5 0.026 13.4 0.3 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|344212768|ref|YP_004797088.1| - 0.024 15.0 0.8 0.26 11.7 0.2 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|344212768|ref|YP_004797088.1| - 0.056 13.2 0.6 1.3 8.7 0.1 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding CopD PF05425.8 gi|344212771|ref|YP_004797091.1| - 3.4e-10 40.0 7.8 3.4e-10 40.0 5.4 2.0 1 1 1 2 2 2 1 Copper resistance protein D DUF2214 PF09980.4 gi|344212771|ref|YP_004797091.1| - 0.05 13.3 0.3 0.05 13.3 0.2 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2214) Ni_hydr_CYTB PF01292.15 gi|344212771|ref|YP_004797091.1| - 0.11 11.9 3.0 0.13 11.6 2.1 1.2 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 DUF2269 PF10027.4 gi|344212771|ref|YP_004797091.1| - 0.12 12.1 7.2 0.17 11.6 5.0 1.3 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF4131 PF13567.1 gi|344212771|ref|YP_004797091.1| - 2 7.7 6.8 1 8.7 2.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Trp_oprn_chp PF09534.5 gi|344212771|ref|YP_004797091.1| - 7 6.2 10.6 0.57 9.7 3.4 1.9 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) RhodobacterPufX PF11511.3 gi|344212772|ref|YP_004797092.1| - 0.0062 15.9 0.4 0.0062 15.9 0.3 3.1 3 0 0 3 3 3 1 Intrinsic membrane protein PufX DUF1691 PF07950.6 gi|344212772|ref|YP_004797092.1| - 3.8 7.4 6.0 73 3.3 4.1 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1691) Methyltransf_11 PF08241.7 gi|344212773|ref|YP_004797093.1| - 3.9e-17 62.5 0.2 1.3e-16 60.8 0.1 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212773|ref|YP_004797093.1| - 7.1e-13 48.4 0.1 3.5e-12 46.1 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212773|ref|YP_004797093.1| - 2.6e-11 43.4 0.0 4.4e-11 42.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212773|ref|YP_004797093.1| - 6.3e-10 39.3 0.2 1.9e-09 37.7 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344212773|ref|YP_004797093.1| - 6.7e-09 36.1 0.7 8.3e-08 32.6 0.2 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344212773|ref|YP_004797093.1| - 5.6e-08 33.3 2.1 6e-07 30.0 1.5 2.8 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|344212773|ref|YP_004797093.1| - 8.5e-08 31.7 0.0 1.5e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|344212773|ref|YP_004797093.1| - 1.3e-06 27.7 0.1 9.5e-06 24.8 0.0 2.2 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|344212773|ref|YP_004797093.1| - 3.5e-05 23.7 8.0 0.00025 21.0 5.6 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|344212773|ref|YP_004797093.1| - 0.00029 20.5 0.0 0.00074 19.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|344212773|ref|YP_004797093.1| - 0.00059 19.4 0.0 0.0011 18.4 0.0 1.5 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|344212773|ref|YP_004797093.1| - 0.00061 19.8 0.1 0.00076 19.5 0.1 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase CMAS PF02353.15 gi|344212773|ref|YP_004797093.1| - 0.00087 18.4 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|344212773|ref|YP_004797093.1| - 0.0015 17.5 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|344212773|ref|YP_004797093.1| - 0.0027 17.0 0.1 0.0082 15.5 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|344212773|ref|YP_004797093.1| - 0.012 15.2 0.1 0.016 14.8 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase AP_endonuc_2 PF01261.19 gi|344212774|ref|YP_004797094.1| - 3.5e-31 108.1 1.8 6.7e-31 107.2 1.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Autoind_bind PF03472.10 gi|344212774|ref|YP_004797094.1| - 0.019 14.2 0.0 2.2 7.5 0.0 2.5 2 0 0 2 2 2 0 Autoinducer binding domain DUF3185 PF11381.3 gi|344212775|ref|YP_004797095.1| - 0.065 13.0 6.5 2.9 7.7 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) IncA PF04156.9 gi|344212775|ref|YP_004797095.1| - 0.19 11.2 6.5 0.23 11.0 4.5 1.1 1 0 0 1 1 1 0 IncA protein DUF1469 PF07332.6 gi|344212775|ref|YP_004797095.1| - 1.4 8.6 8.4 1.8 8.3 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) HTH_10 PF04967.7 gi|344212776|ref|YP_004797096.1| - 5.8e-13 48.2 0.0 9.2e-13 47.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344212776|ref|YP_004797096.1| - 0.0042 16.7 0.0 0.0098 15.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344212776|ref|YP_004797096.1| - 0.016 14.9 0.0 0.087 12.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|344212776|ref|YP_004797096.1| - 0.047 13.2 0.1 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|344212776|ref|YP_004797096.1| - 0.13 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain BPL_LplA_LipB PF03099.14 gi|344212777|ref|YP_004797097.1| - 1.6e-12 47.5 0.0 2.5e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family TcpQ PF10671.4 gi|344212777|ref|YP_004797097.1| - 0.041 13.7 0.1 3.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Toxin co-regulated pilus biosynthesis protein Q Cupin_2 PF07883.6 gi|344212778|ref|YP_004797098.1| - 6.5e-11 41.5 0.9 1.5e-10 40.4 0.6 1.6 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|344212778|ref|YP_004797098.1| - 0.00041 20.0 0.5 0.00078 19.1 0.3 1.6 1 1 0 1 1 1 1 AraC-like ligand binding domain TF_Zn_Ribbon PF08271.7 gi|344212778|ref|YP_004797098.1| - 0.00048 19.3 1.4 0.001 18.3 1.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|344212778|ref|YP_004797098.1| - 0.005 16.5 1.2 0.0088 15.7 0.8 1.4 1 0 0 1 1 1 1 Nudix N-terminal Cupin_1 PF00190.17 gi|344212778|ref|YP_004797098.1| - 0.0056 16.1 0.0 0.0088 15.4 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|344212778|ref|YP_004797098.1| - 0.023 14.1 0.4 0.06 12.7 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF861) Zn-ribbon_8 PF09723.5 gi|344212778|ref|YP_004797098.1| - 0.057 13.3 1.4 0.12 12.3 1.0 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Elf1 PF05129.8 gi|344212778|ref|YP_004797098.1| - 0.059 13.0 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_4 PF13717.1 gi|344212778|ref|YP_004797098.1| - 0.063 12.9 0.9 0.2 11.3 0.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344212778|ref|YP_004797098.1| - 0.087 12.4 1.1 0.31 10.6 0.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain DUF2387 PF09526.5 gi|344212778|ref|YP_004797098.1| - 0.14 12.0 0.8 0.24 11.3 0.5 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HTH_10 PF04967.7 gi|344212779|ref|YP_004797099.1| - 1.6e-15 56.4 0.0 2.5e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344212779|ref|YP_004797099.1| - 0.0071 16.0 0.0 0.36 10.5 0.0 2.4 2 0 0 2 2 2 1 MarR family DUF3773 PF12608.3 gi|344212779|ref|YP_004797099.1| - 0.11 12.4 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3773) Complex1_49kDa PF00346.14 gi|344212780|ref|YP_004797100.1| - 5.8e-65 218.9 0.0 3.1e-41 141.1 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|344212780|ref|YP_004797100.1| - 4.7e-29 100.6 0.1 8.7e-29 99.8 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PMSR PF01625.16 gi|344212781|ref|YP_004797101.1| - 4.6e-55 185.7 0.7 5.3e-55 185.5 0.5 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase 4HBT_2 PF13279.1 gi|344212782|ref|YP_004797102.1| - 4.6e-20 72.2 0.0 5.7e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|344212782|ref|YP_004797102.1| - 3e-17 62.5 0.1 5.8e-17 61.5 0.1 1.5 1 1 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|344212782|ref|YP_004797102.1| - 3.3e-09 36.0 0.3 1.3e-05 24.3 0.2 2.0 2 0 0 2 2 2 2 Acyl-ACP thioesterase UPF0118 PF01594.11 gi|344212783|ref|YP_004797103.1| - 7.5e-21 74.4 44.6 4.2e-20 71.9 30.9 2.2 1 1 0 1 1 1 1 Domain of unknown function DUF20 RIO1 PF01163.17 gi|344212785|ref|YP_004797105.1| - 8.2e-50 168.7 0.7 1.2e-49 168.2 0.5 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|344212785|ref|YP_004797105.1| - 7.9e-29 99.5 0.0 1.5e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|344212785|ref|YP_004797105.1| - 4.4e-06 26.6 0.3 0.016 14.9 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|344212785|ref|YP_004797105.1| - 0.00019 20.6 0.0 0.00029 20.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Sulfolobus_pRN PF05584.6 gi|344212785|ref|YP_004797105.1| - 0.021 14.7 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2513 PF10711.4 gi|344212785|ref|YP_004797105.1| - 0.094 12.8 0.2 0.28 11.2 0.0 1.8 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) ComZ PF10815.3 gi|344212785|ref|YP_004797105.1| - 0.11 12.2 0.1 0.29 10.9 0.1 1.7 1 0 0 1 1 1 0 ComZ Fe_dep_repress PF01325.14 gi|344212786|ref|YP_004797106.1| - 3e-13 49.4 0.0 6.2e-13 48.4 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|344212786|ref|YP_004797106.1| - 2e-07 30.5 0.0 5.1e-07 29.2 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|344212786|ref|YP_004797106.1| - 2.8e-05 24.3 0.0 5.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|344212786|ref|YP_004797106.1| - 0.00075 19.1 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.10 gi|344212786|ref|YP_004797106.1| - 0.0027 17.3 0.1 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_IclR PF09339.5 gi|344212786|ref|YP_004797106.1| - 0.016 14.8 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|344212786|ref|YP_004797106.1| - 0.018 14.3 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|344212786|ref|YP_004797106.1| - 0.024 14.7 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator NifU PF01106.12 gi|344212787|ref|YP_004797107.1| - 9.6e-12 44.5 0.1 1.2e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain AFOR_C PF01314.13 gi|344212788|ref|YP_004797108.1| - 5.8e-73 245.7 0.5 2.2e-72 243.8 0.4 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|344212788|ref|YP_004797108.1| - 7.3e-58 195.2 0.0 1.2e-57 194.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SBP_bac_5 PF00496.17 gi|344212789|ref|YP_004797109.1| - 9.2e-49 166.2 6.9 1.4e-48 165.6 4.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|344212790|ref|YP_004797110.1| - 1.3e-41 142.2 12.2 1.3e-41 142.2 8.4 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344212791|ref|YP_004797111.1| - 5.1e-31 107.6 9.2 5.1e-31 107.6 6.4 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|344212791|ref|YP_004797111.1| - 7.3e-08 31.6 0.0 7.3e-08 31.6 0.0 3.0 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|344212792|ref|YP_004797112.1| - 8.8e-27 94.0 0.0 1.2e-26 93.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|344212792|ref|YP_004797112.1| - 2.1e-20 72.8 0.2 4e-20 71.9 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|344212792|ref|YP_004797112.1| - 5.6e-05 23.2 0.1 0.00018 21.5 0.0 1.6 1 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|344212792|ref|YP_004797112.1| - 0.0088 15.4 0.5 0.062 12.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344212792|ref|YP_004797112.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|344212792|ref|YP_004797112.1| - 0.015 15.3 0.4 0.48 10.5 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|344212792|ref|YP_004797112.1| - 0.11 11.9 0.3 0.78 9.1 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|344212792|ref|YP_004797112.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF2075 PF09848.4 gi|344212792|ref|YP_004797112.1| - 0.19 10.6 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.22 gi|344212793|ref|YP_004797113.1| - 1.3e-34 119.3 0.0 3.7e-34 117.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.7 gi|344212793|ref|YP_004797113.1| - 2e-17 63.2 0.1 4.3e-17 62.2 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|344212793|ref|YP_004797113.1| - 2.3e-06 27.7 0.0 0.0088 16.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344212793|ref|YP_004797113.1| - 5.6e-06 26.4 3.5 2.8e-05 24.1 0.1 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344212793|ref|YP_004797113.1| - 1.7e-05 24.9 0.2 0.00014 22.0 0.1 2.3 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|344212793|ref|YP_004797113.1| - 2.7e-05 23.5 0.0 4.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|344212793|ref|YP_004797113.1| - 0.00075 18.9 0.0 0.0033 16.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|344212793|ref|YP_004797113.1| - 0.0028 17.8 0.0 0.037 14.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|344212793|ref|YP_004797113.1| - 0.0044 16.6 0.1 0.0084 15.7 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|344212793|ref|YP_004797113.1| - 0.0048 16.6 0.2 0.027 14.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|344212793|ref|YP_004797113.1| - 0.0056 16.1 0.0 0.0056 16.1 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activat PF00158.21 gi|344212793|ref|YP_004797113.1| - 0.029 13.8 0.0 1.6 8.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|344212793|ref|YP_004797113.1| - 0.032 13.4 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|344212793|ref|YP_004797113.1| - 0.033 14.5 0.7 0.094 13.0 0.1 2.0 2 1 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|344212793|ref|YP_004797113.1| - 0.035 13.5 0.0 0.24 10.8 0.0 2.0 2 1 0 2 2 2 0 AAA-like domain PRK PF00485.13 gi|344212793|ref|YP_004797113.1| - 0.041 13.4 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|344212793|ref|YP_004797113.1| - 0.054 12.3 0.0 0.092 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.1 gi|344212793|ref|YP_004797113.1| - 0.06 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|344212793|ref|YP_004797113.1| - 0.063 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PduV-EutP PF10662.4 gi|344212793|ref|YP_004797113.1| - 0.065 12.7 0.1 0.18 11.3 0.1 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|344212793|ref|YP_004797113.1| - 0.081 12.6 0.1 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|344212793|ref|YP_004797113.1| - 0.11 13.3 0.0 0.3 11.9 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|344212793|ref|YP_004797113.1| - 0.12 12.2 0.0 0.58 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|344212793|ref|YP_004797113.1| - 0.15 11.4 0.1 6.9 6.0 0.0 2.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.18 gi|344212793|ref|YP_004797113.1| - 0.17 11.8 0.0 0.65 9.9 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|344212793|ref|YP_004797113.1| - 0.29 10.1 0.0 6.3 5.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|344212793|ref|YP_004797113.1| - 0.41 9.0 0.3 11 4.3 0.2 2.0 2 0 0 2 2 2 0 AAA domain REV PF00424.13 gi|344212794|ref|YP_004797114.1| - 0.071 13.0 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) ABC_transp_aux PF09822.4 gi|344212795|ref|YP_004797115.1| - 3.5e-06 26.6 0.0 5.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|344212795|ref|YP_004797115.1| - 0.00083 19.5 0.3 0.0032 17.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|344212795|ref|YP_004797115.1| - 0.0064 16.2 0.1 0.011 15.4 0.0 1.3 1 1 0 1 1 1 1 Trehalose utilisation Peptidase_S49 PF01343.13 gi|344212796|ref|YP_004797116.1| - 4.1e-21 75.3 1.9 3.4e-20 72.3 1.3 2.2 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|344212796|ref|YP_004797116.1| - 0.0018 17.9 0.1 0.0079 15.8 0.0 1.9 2 0 0 2 2 2 1 Clp protease OKR_DC_1_N PF03709.10 gi|344212796|ref|YP_004797116.1| - 0.0059 16.6 0.0 0.027 14.5 0.0 1.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain ECH PF00378.15 gi|344212796|ref|YP_004797116.1| - 0.073 12.1 0.4 0.18 10.8 0.0 1.8 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family Aldo_ket_red PF00248.16 gi|344212797|ref|YP_004797117.1| - 3e-27 95.1 0.0 3.6e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Methyltransf_11 PF08241.7 gi|344212798|ref|YP_004797118.1| - 7.2e-12 45.6 0.1 1.1e-11 45.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344212798|ref|YP_004797118.1| - 1.5e-07 31.9 0.2 2.8e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212798|ref|YP_004797118.1| - 1.6e-07 31.6 0.0 2.5e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344212798|ref|YP_004797118.1| - 4.1e-06 27.1 0.1 6.6e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212798|ref|YP_004797118.1| - 9.3e-06 25.6 4.0 9.3e-06 25.6 2.8 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212798|ref|YP_004797118.1| - 1.1e-05 25.2 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212798|ref|YP_004797118.1| - 0.00015 21.4 0.0 0.0002 20.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|344212798|ref|YP_004797118.1| - 0.00016 22.4 0.8 0.00089 20.0 0.3 2.0 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|344212798|ref|YP_004797118.1| - 0.00035 19.7 0.0 0.00046 19.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Ubie_methyltran PF01209.13 gi|344212798|ref|YP_004797118.1| - 0.00091 18.3 0.0 0.0013 17.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|344212798|ref|YP_004797118.1| - 0.03 13.9 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Cons_hypoth95 PF03602.10 gi|344212798|ref|YP_004797118.1| - 0.11 11.8 0.2 0.23 10.8 0.1 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 CMAS PF02353.15 gi|344212798|ref|YP_004797118.1| - 0.14 11.2 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_PK PF05891.7 gi|344212798|ref|YP_004797118.1| - 0.16 11.2 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Cupin_2 PF07883.6 gi|344212799|ref|YP_004797119.1| - 5.6e-07 28.9 2.7 5.6e-07 28.9 1.9 1.9 1 1 1 2 2 2 1 Cupin domain AraC_binding PF02311.14 gi|344212799|ref|YP_004797119.1| - 0.029 14.0 0.1 0.036 13.7 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain AraC_binding_2 PF14525.1 gi|344212799|ref|YP_004797119.1| - 0.033 13.7 0.1 0.039 13.5 0.1 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_3 PF05899.7 gi|344212799|ref|YP_004797119.1| - 0.055 12.8 0.1 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF861) DUF1637 PF07847.7 gi|344212799|ref|YP_004797119.1| - 0.062 12.6 0.0 0.069 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1637) Cupin_1 PF00190.17 gi|344212799|ref|YP_004797119.1| - 0.069 12.5 0.0 0.091 12.1 0.0 1.3 1 1 0 1 1 1 0 Cupin HpcH_HpaI PF03328.9 gi|344212800|ref|YP_004797120.1| - 8.5e-37 126.1 0.0 1e-36 125.9 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family TFIIB PF00382.14 gi|344212801|ref|YP_004797121.1| - 4.6e-28 96.8 0.1 6.6e-15 54.6 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344212801|ref|YP_004797121.1| - 6.5e-17 60.5 1.9 1.3e-16 59.5 1.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|344212801|ref|YP_004797121.1| - 0.00068 19.2 0.6 0.0013 18.3 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|344212801|ref|YP_004797121.1| - 0.0069 16.3 0.0 0.24 11.3 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain Rubredoxin PF00301.15 gi|344212801|ref|YP_004797121.1| - 0.0094 15.8 0.9 2.1 8.2 0.1 2.5 2 0 0 2 2 2 2 Rubredoxin Sigma70_r4 PF04545.11 gi|344212801|ref|YP_004797121.1| - 0.044 13.0 4.0 0.097 11.9 0.2 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 DZR PF12773.2 gi|344212801|ref|YP_004797121.1| - 0.07 12.9 0.5 0.13 12.1 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|344212801|ref|YP_004797121.1| - 0.35 10.3 1.1 0.99 8.9 0.8 1.7 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|344212801|ref|YP_004797121.1| - 0.43 9.8 3.9 0.98 8.7 2.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|344212801|ref|YP_004797121.1| - 0.98 9.5 4.3 2.6 8.1 3.0 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Auto_anti-p27 PF06677.7 gi|344212801|ref|YP_004797121.1| - 1 9.1 3.4 0.7 9.7 0.7 1.9 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HTH_10 PF04967.7 gi|344212802|ref|YP_004797122.1| - 2.2e-14 52.7 0.0 3.4e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|344212802|ref|YP_004797122.1| - 7e-06 25.4 0.2 0.00012 21.4 0.1 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.1 gi|344212802|ref|YP_004797122.1| - 8.4e-05 22.0 0.1 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|344212802|ref|YP_004797122.1| - 0.00015 21.3 0.1 0.00035 20.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|344212802|ref|YP_004797122.1| - 0.00065 19.0 0.1 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|344212802|ref|YP_004797122.1| - 0.0013 18.3 0.0 0.0026 17.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_8 PF02954.14 gi|344212802|ref|YP_004797122.1| - 0.0015 18.0 0.1 0.0034 16.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.1 gi|344212802|ref|YP_004797122.1| - 0.0024 17.3 0.2 0.0044 16.5 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|344212802|ref|YP_004797122.1| - 0.0024 17.6 0.1 0.0077 16.0 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344212802|ref|YP_004797122.1| - 0.0026 17.0 0.1 0.008 15.4 0.1 1.8 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_psq PF05225.11 gi|344212802|ref|YP_004797122.1| - 0.007 15.8 0.1 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain Sigma70_ECF PF07638.6 gi|344212802|ref|YP_004797122.1| - 0.0083 15.8 0.1 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 ECF sigma factor HTH_28 PF13518.1 gi|344212802|ref|YP_004797122.1| - 0.013 15.5 0.1 0.036 14.0 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|344212802|ref|YP_004797122.1| - 0.018 14.8 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_IclR PF09339.5 gi|344212802|ref|YP_004797122.1| - 0.031 13.8 0.1 0.059 12.9 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_WhiA PF02650.9 gi|344212802|ref|YP_004797122.1| - 0.038 14.3 0.0 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 WhiA C-terminal HTH domain TetR_N PF00440.18 gi|344212802|ref|YP_004797122.1| - 0.051 13.2 0.3 0.18 11.4 0.2 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family UPF0122 PF04297.9 gi|344212802|ref|YP_004797122.1| - 0.076 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Peptidase_A2E PF12382.3 gi|344212803|ref|YP_004797123.1| - 0.089 12.5 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Retrotransposon peptidase 2-Hacid_dh_C PF02826.14 gi|344212804|ref|YP_004797124.1| - 2.7e-57 192.8 0.0 4.4e-57 192.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|344212804|ref|YP_004797124.1| - 9.4e-32 109.2 0.1 1.5e-31 108.5 0.1 1.4 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|344212804|ref|YP_004797124.1| - 0.034 14.3 2.0 0.085 13.0 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ThiS PF02597.15 gi|344212805|ref|YP_004797125.1| - 4e-16 59.1 0.1 4.6e-16 59.0 0.1 1.0 1 0 0 1 1 1 1 ThiS family ThiS PF02597.15 gi|344212806|ref|YP_004797126.1| - 1e-05 25.8 0.0 9.3e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 ThiS family PilJ PF13675.1 gi|344212807|ref|YP_004797127.1| - 0.017 15.3 0.5 0.03 14.6 0.2 1.5 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term AFOR_C PF01314.13 gi|344212811|ref|YP_004797131.1| - 1.9e-126 421.8 3.6 2.3e-126 421.5 2.5 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|344212811|ref|YP_004797131.1| - 1.1e-76 256.7 0.1 1.7e-76 256.0 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ribosomal_L15e PF00827.12 gi|344212812|ref|YP_004797132.1| - 4.1e-81 271.0 7.4 4.9e-81 270.8 5.1 1.0 1 0 0 1 1 1 1 Ribosomal L15 DUF624 PF04854.9 gi|344212813|ref|YP_004797133.1| - 0.056 13.3 1.0 0.32 10.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF624 DUF4117 PF13491.1 gi|344212813|ref|YP_004797133.1| - 0.064 12.6 3.5 0.095 12.1 2.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4117) DUF2069 PF09842.4 gi|344212813|ref|YP_004797133.1| - 0.41 10.6 4.8 0.073 13.0 1.0 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2069) DUF3382 PF11862.3 gi|344212814|ref|YP_004797134.1| - 0.19 11.6 3.9 0.23 11.3 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3382) BCD PF15461.1 gi|344212815|ref|YP_004797135.1| - 2e-82 276.4 17.7 2.9e-82 275.9 12.3 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase SQS_PSY PF00494.14 gi|344212817|ref|YP_004797137.1| - 4.5e-64 216.3 8.8 5.7e-64 215.9 6.1 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase EcoEI_R_C PF08463.5 gi|344212817|ref|YP_004797137.1| - 0.036 13.9 0.1 0.12 12.2 0.0 1.9 2 0 0 2 2 2 0 EcoEI R protein C-terminal HTH_10 PF04967.7 gi|344212818|ref|YP_004797138.1| - 1.5e-16 59.6 0.0 3.1e-16 58.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|344212818|ref|YP_004797138.1| - 5.7e-15 56.0 1.1 2.4e-14 54.0 0.3 2.2 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.5 gi|344212818|ref|YP_004797138.1| - 3.6e-12 46.2 0.0 1.1e-11 44.7 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF_3 PF13492.1 gi|344212818|ref|YP_004797138.1| - 1.1e-08 35.1 1.5 8.5e-08 32.3 0.3 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|344212818|ref|YP_004797138.1| - 1.4e-07 31.7 2.7 1.6e-07 31.5 0.7 1.9 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|344212818|ref|YP_004797138.1| - 7.2e-07 29.5 0.0 1.7e-06 28.3 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|344212818|ref|YP_004797138.1| - 0.0016 18.1 0.0 0.0043 16.8 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|344212818|ref|YP_004797138.1| - 0.0026 17.5 0.0 0.0065 16.2 0.0 1.7 1 0 0 1 1 1 1 PAS domain Big_2 PF02368.13 gi|344212818|ref|YP_004797138.1| - 0.043 13.6 0.9 0.25 11.2 0.5 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 2) PAS_7 PF12860.2 gi|344212818|ref|YP_004797138.1| - 0.055 13.4 0.0 0.16 12.0 0.0 1.9 1 1 0 1 1 1 0 PAS fold DUF4140 PF13600.1 gi|344212818|ref|YP_004797138.1| - 0.099 13.1 4.7 6.4 7.2 0.3 2.8 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) zf-dskA_traR PF01258.12 gi|344212819|ref|YP_004797139.1| - 0.057 13.1 1.5 1.1 9.1 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF3639 PF12341.3 gi|344212819|ref|YP_004797139.1| - 0.13 12.2 0.9 0.2 11.6 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3639) DZR PF12773.2 gi|344212819|ref|YP_004797139.1| - 0.35 10.7 3.4 1.3 8.9 2.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon RNB PF00773.14 gi|344212820|ref|YP_004797140.1| - 4.5e-76 256.2 0.0 6.7e-74 249.0 0.0 2.1 1 1 0 1 1 1 1 RNB domain ABC_tran PF00005.22 gi|344212821|ref|YP_004797141.1| - 5.4e-29 101.2 0.0 7e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212821|ref|YP_004797141.1| - 1.9e-14 54.2 0.1 6e-10 39.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|344212821|ref|YP_004797141.1| - 0.012 14.6 0.0 0.46 9.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|344212821|ref|YP_004797141.1| - 0.019 15.2 0.0 0.022 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|344212821|ref|YP_004797141.1| - 0.03 14.2 0.0 0.082 12.8 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|344212821|ref|YP_004797141.1| - 0.08 13.1 0.0 0.39 10.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|344212821|ref|YP_004797141.1| - 0.15 11.5 0.2 0.29 10.6 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3685 PF12452.3 gi|344212822|ref|YP_004797142.1| - 1.1 8.4 2.6 1.8 7.6 1.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3685) Lactamase_B PF00753.22 gi|344212824|ref|YP_004797144.1| - 2.6e-18 66.3 8.1 4.2e-18 65.7 5.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|344212824|ref|YP_004797144.1| - 2.4e-07 31.0 0.0 3.8e-07 30.4 0.0 1.3 1 0 0 1 1 1 1 Rhodanese-like domain DUF3662 PF12401.3 gi|344212824|ref|YP_004797144.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2662) HTH_20 PF12840.2 gi|344212825|ref|YP_004797145.1| - 0.013 15.2 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|344212825|ref|YP_004797145.1| - 0.15 11.6 0.1 0.21 11.1 0.0 1.4 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) C2 PF00168.25 gi|344212826|ref|YP_004797146.1| - 0.043 13.6 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 C2 domain PKD PF00801.15 gi|344212827|ref|YP_004797147.1| - 5.8e-05 22.7 13.1 0.00036 20.2 0.5 3.1 3 0 0 3 3 3 2 PKD domain ChitinaseA_N PF08329.5 gi|344212827|ref|YP_004797147.1| - 0.0014 18.4 6.6 0.076 12.7 0.1 3.3 3 0 0 3 3 3 2 Chitinase A, N-terminal domain Big_3_4 PF13754.1 gi|344212827|ref|YP_004797147.1| - 0.0033 17.7 27.2 0.012 15.9 2.2 3.9 3 1 0 3 3 3 2 Bacterial Ig-like domain (group 3) He_PIG PF05345.7 gi|344212827|ref|YP_004797147.1| - 0.047 13.7 5.6 0.2 11.7 0.8 3.0 2 1 0 2 2 2 0 Putative Ig domain Y_Y_Y PF07495.8 gi|344212827|ref|YP_004797147.1| - 0.074 12.8 0.0 0.26 11.0 0.0 2.0 1 0 0 1 1 1 0 Y_Y_Y domain REJ PF02010.10 gi|344212827|ref|YP_004797147.1| - 0.092 11.0 1.7 0.36 9.0 1.0 1.8 1 1 0 1 1 1 0 REJ domain Big_2 PF02368.13 gi|344212827|ref|YP_004797147.1| - 0.53 10.2 7.8 7.3 6.5 0.1 3.1 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 2) HypA PF01155.14 gi|344212828|ref|YP_004797148.1| - 0.00033 20.3 2.7 0.0063 16.1 0.2 2.2 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|344212828|ref|YP_004797148.1| - 0.0026 17.6 4.7 0.014 15.3 1.0 2.4 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|344212828|ref|YP_004797148.1| - 0.0084 15.9 1.8 0.23 11.2 0.2 2.5 2 0 0 2 2 2 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|344212828|ref|YP_004797148.1| - 0.019 14.2 5.7 1.1 8.6 0.1 4.0 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|344212828|ref|YP_004797148.1| - 0.02 14.0 8.4 0.14 11.3 3.2 2.8 2 1 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|344212828|ref|YP_004797148.1| - 0.023 14.5 1.1 0.15 11.8 0.2 2.2 2 0 0 2 2 2 0 RNHCP domain zf-ZPR1 PF03367.8 gi|344212828|ref|YP_004797148.1| - 0.052 12.7 1.0 0.7 9.0 0.2 2.4 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Elf1 PF05129.8 gi|344212828|ref|YP_004797148.1| - 0.062 12.9 0.4 7 6.4 0.1 2.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|344212828|ref|YP_004797148.1| - 0.085 12.9 1.8 35 4.5 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|344212828|ref|YP_004797148.1| - 0.12 11.9 2.9 7.7 6.1 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344212828|ref|YP_004797148.1| - 0.16 11.7 2.9 11 5.7 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DUF1660 PF07874.6 gi|344212828|ref|YP_004797148.1| - 0.19 12.0 0.4 1.2 9.4 0.3 2.2 1 1 0 1 1 1 0 Prophage protein (DUF1660) zf-FPG_IleRS PF06827.9 gi|344212828|ref|YP_004797148.1| - 0.22 11.1 6.4 1.8 8.3 0.3 2.6 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.5 gi|344212828|ref|YP_004797148.1| - 0.52 9.8 6.6 5.7 6.5 0.3 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|344212828|ref|YP_004797148.1| - 0.65 9.7 3.6 1.3 8.7 0.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid RNA_POL_M_15KD PF02150.11 gi|344212828|ref|YP_004797148.1| - 0.69 9.6 4.1 62 3.4 0.2 3.4 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.14 gi|344212828|ref|YP_004797148.1| - 1.3 8.5 5.2 51 3.4 0.1 3.1 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-RING_3 PF14369.1 gi|344212828|ref|YP_004797148.1| - 2 8.4 8.1 21 5.2 0.3 3.5 2 1 1 3 3 3 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|344212828|ref|YP_004797148.1| - 3.7 7.4 7.4 40 4.1 2.8 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|344212828|ref|YP_004797148.1| - 9.2 6.1 6.1 1e+02 2.8 0.0 2.9 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|344212828|ref|YP_004797148.1| - 9.3 5.8 12.2 23 4.6 0.9 3.2 2 1 1 3 3 3 0 zinc-ribbon domain ABC2_membrane PF01061.19 gi|344212830|ref|YP_004797150.1| - 3.4e-24 85.1 21.4 4.2e-24 84.8 14.8 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|344212830|ref|YP_004797150.1| - 1.1e-05 24.6 19.5 1.1e-05 24.6 13.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|344212831|ref|YP_004797151.1| - 5.4e-32 110.9 0.0 8e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212831|ref|YP_004797151.1| - 1e-14 55.2 0.0 9.1e-09 35.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|344212831|ref|YP_004797151.1| - 7.3e-05 23.1 0.0 0.00015 22.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|344212831|ref|YP_004797151.1| - 0.0015 18.0 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|344212831|ref|YP_004797151.1| - 0.004 16.5 0.0 0.01 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|344212831|ref|YP_004797151.1| - 0.0073 15.7 0.2 3 7.2 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein DUF258 PF03193.11 gi|344212831|ref|YP_004797151.1| - 0.0085 15.2 0.0 0.016 14.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|344212831|ref|YP_004797151.1| - 0.01 16.2 0.0 0.014 15.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|344212831|ref|YP_004797151.1| - 0.014 14.9 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|344212831|ref|YP_004797151.1| - 0.029 14.0 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|344212831|ref|YP_004797151.1| - 0.032 13.7 0.2 0.12 11.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|344212831|ref|YP_004797151.1| - 0.033 13.9 0.0 0.25 11.0 0.0 2.2 2 1 0 2 2 2 0 NTPase AAA_15 PF13175.1 gi|344212831|ref|YP_004797151.1| - 0.036 13.1 0.0 1.3 7.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|344212831|ref|YP_004797151.1| - 0.04 13.7 0.1 0.086 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|344212831|ref|YP_004797151.1| - 0.056 12.6 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|344212831|ref|YP_004797151.1| - 0.058 13.3 0.0 0.16 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|344212831|ref|YP_004797151.1| - 0.066 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MMR_HSR1 PF01926.18 gi|344212831|ref|YP_004797151.1| - 0.069 13.1 0.0 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase DLIC PF05783.6 gi|344212831|ref|YP_004797151.1| - 0.093 11.3 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) IIGP PF05049.8 gi|344212831|ref|YP_004797151.1| - 0.093 11.5 0.1 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) ATP_bind_1 PF03029.12 gi|344212831|ref|YP_004797151.1| - 0.1 12.1 0.0 0.56 9.6 0.0 2.1 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|344212831|ref|YP_004797151.1| - 0.12 12.5 0.3 0.71 10.0 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|344212831|ref|YP_004797151.1| - 0.16 11.8 0.0 2.6 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF552 PF04472.7 gi|344212832|ref|YP_004797152.1| - 4.2e-17 61.8 2.2 5.2e-17 61.5 1.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF552) Pribosyltran_N PF13793.1 gi|344212832|ref|YP_004797152.1| - 0.072 12.8 0.2 0.09 12.5 0.2 1.2 1 0 0 1 1 1 0 N-terminal domain of ribose phosphate pyrophosphokinase ATP-grasp_3 PF02655.9 gi|344212832|ref|YP_004797152.1| - 0.13 12.1 0.1 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 ATP-grasp domain FtsX PF02687.16 gi|344212833|ref|YP_004797153.1| - 0.18 11.5 6.1 0.81 9.4 0.7 2.1 2 0 0 2 2 2 0 FtsX-like permease family MnhB PF04039.8 gi|344212833|ref|YP_004797153.1| - 0.67 10.0 7.8 31 4.6 5.4 2.1 1 1 0 1 1 1 0 Domain related to MnhB subunit of Na+/H+ antiporter PUA PF01472.15 gi|344212834|ref|YP_004797154.1| - 5.6e-19 67.6 1.1 9.6e-19 66.8 0.7 1.4 1 0 0 1 1 1 1 PUA domain Glycos_transf_3 PF00591.16 gi|344212834|ref|YP_004797154.1| - 0.075 12.4 0.0 0.083 12.2 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase family, a/b domain Kri1 PF05178.7 gi|344212834|ref|YP_004797154.1| - 0.12 12.6 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 KRI1-like family UL11 PF11094.3 gi|344212834|ref|YP_004797154.1| - 0.38 10.5 3.9 0.36 10.6 0.5 2.4 3 0 0 3 3 3 0 Membrane-associated tegument protein Peripla_BP_2 PF01497.13 gi|344212835|ref|YP_004797155.1| - 1.6e-40 138.7 0.1 2.1e-40 138.3 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ThiF PF00899.16 gi|344212837|ref|YP_004797157.1| - 1.6e-44 151.0 0.1 2.5e-44 150.4 0.1 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|344212837|ref|YP_004797157.1| - 3.5e-32 109.8 0.1 5.8e-32 109.1 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|344212837|ref|YP_004797157.1| - 0.0077 15.2 0.1 0.012 14.6 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|344212837|ref|YP_004797157.1| - 0.022 15.0 0.7 0.27 11.5 0.5 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|344212837|ref|YP_004797157.1| - 0.029 14.4 0.1 0.057 13.5 0.0 1.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase MCPsignal PF00015.16 gi|344212838|ref|YP_004797158.1| - 6.2e-53 179.5 52.2 1.9e-50 171.3 24.1 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|344212838|ref|YP_004797158.1| - 5.1e-07 29.5 32.6 0.0031 17.2 2.3 4.2 2 2 2 4 4 4 4 Laminin Domain II Syntaxin_2 PF14523.1 gi|344212838|ref|YP_004797158.1| - 2.9e-05 24.0 9.9 0.16 12.0 0.2 4.2 2 2 1 3 3 3 2 Syntaxin-like protein Spc7 PF08317.6 gi|344212838|ref|YP_004797158.1| - 0.00068 18.4 24.5 0.02 13.5 6.0 2.2 1 1 0 2 2 2 2 Spc7 kinetochore protein DUF948 PF06103.6 gi|344212838|ref|YP_004797158.1| - 0.00078 19.2 29.8 0.35 10.7 0.1 5.1 2 2 4 6 6 6 5 Bacterial protein of unknown function (DUF948) Sec5 PF15469.1 gi|344212838|ref|YP_004797158.1| - 0.0024 17.6 3.8 0.0024 17.6 2.7 2.2 1 1 1 2 2 2 1 Exocyst complex component Sec5 CorA PF01544.13 gi|344212838|ref|YP_004797158.1| - 0.0033 16.5 17.6 0.0095 15.0 5.0 2.3 2 0 0 2 2 2 2 CorA-like Mg2+ transporter protein WXG100 PF06013.7 gi|344212838|ref|YP_004797158.1| - 0.0042 17.0 28.7 1.1 9.2 0.7 6.3 1 1 2 6 6 6 2 Proteins of 100 residues with WXG DASH_Duo1 PF08651.5 gi|344212838|ref|YP_004797158.1| - 0.012 15.1 0.9 0.012 15.1 0.6 4.7 3 2 2 5 5 5 0 DASH complex subunit Duo1 COG5 PF10392.4 gi|344212838|ref|YP_004797158.1| - 0.012 15.5 9.5 0.021 14.7 0.5 3.3 2 2 1 3 3 3 0 Golgi transport complex subunit 5 Syntaxin-6_N PF09177.6 gi|344212838|ref|YP_004797158.1| - 0.052 13.9 29.0 0.89 10.0 2.4 4.5 2 2 2 4 4 4 0 Syntaxin 6, N-terminal BLOC1_2 PF10046.4 gi|344212838|ref|YP_004797158.1| - 0.055 13.6 31.1 1.4 9.0 2.3 4.6 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|344212838|ref|YP_004797158.1| - 0.07 12.7 25.7 1.5e+04 -5.0 17.8 3.2 1 1 0 1 1 0 0 IncA protein DUF1664 PF07889.7 gi|344212838|ref|YP_004797158.1| - 0.1 12.3 28.1 0.052 13.3 3.8 4.4 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Sec8_exocyst PF04048.9 gi|344212838|ref|YP_004797158.1| - 0.14 11.7 16.1 0.061 12.9 3.8 2.9 2 1 0 2 2 2 0 Sec8 exocyst complex component specific domain Flu_NS2 PF00601.14 gi|344212838|ref|YP_004797158.1| - 0.15 12.3 8.5 1.5 9.0 0.3 3.8 2 2 1 4 4 4 0 Influenza non-structural protein (NS2) Mnd1 PF03962.10 gi|344212838|ref|YP_004797158.1| - 0.15 11.7 25.4 0.18 11.4 4.8 2.6 1 1 0 2 2 2 0 Mnd1 family Seryl_tRNA_N PF02403.17 gi|344212838|ref|YP_004797158.1| - 0.15 12.0 27.8 0.11 12.5 3.6 4.1 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|344212838|ref|YP_004797158.1| - 0.23 11.7 32.1 0.5 10.6 2.3 5.4 2 2 4 6 6 5 0 Nucleopolyhedrovirus P10 protein GAS PF13851.1 gi|344212838|ref|YP_004797158.1| - 0.26 10.4 16.7 1.6 7.9 3.3 3.1 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding EzrA PF06160.7 gi|344212838|ref|YP_004797158.1| - 0.37 8.9 27.4 0.94 7.5 6.2 2.4 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Lebercilin PF15619.1 gi|344212838|ref|YP_004797158.1| - 0.4 10.0 7.0 4.4 6.6 0.2 2.4 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Vps51 PF08700.6 gi|344212838|ref|YP_004797158.1| - 0.42 10.4 13.1 0.44 10.4 0.3 4.8 4 1 0 5 5 5 0 Vps51/Vps67 FlgN PF05130.7 gi|344212838|ref|YP_004797158.1| - 0.48 10.6 27.6 0.2 11.8 3.4 3.3 1 1 1 3 3 3 0 FlgN protein Cauli_AT PF03233.8 gi|344212838|ref|YP_004797158.1| - 0.6 9.8 18.3 0.35 10.5 2.3 3.6 2 1 1 4 4 3 0 Aphid transmission protein HisK_N PF09385.5 gi|344212838|ref|YP_004797158.1| - 0.62 9.6 6.0 1.4 8.5 0.7 2.8 2 2 0 2 2 2 0 Histidine kinase N terminal DUF489 PF04356.7 gi|344212838|ref|YP_004797158.1| - 0.65 9.5 8.1 0.59 9.6 1.1 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF489) Laminin_I PF06008.9 gi|344212838|ref|YP_004797158.1| - 0.66 9.2 29.5 0.03 13.6 6.1 3.4 1 1 0 2 2 2 0 Laminin Domain I TMPIT PF07851.8 gi|344212838|ref|YP_004797158.1| - 0.68 8.9 14.0 0.43 9.6 1.2 2.9 2 1 1 3 3 3 0 TMPIT-like protein DUF745 PF05335.8 gi|344212838|ref|YP_004797158.1| - 0.75 9.2 36.1 0.13 11.7 2.4 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF745) V_ATPase_I PF01496.14 gi|344212838|ref|YP_004797158.1| - 0.88 7.3 19.1 2.9 5.6 12.8 2.2 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family AATF-Che1 PF13339.1 gi|344212838|ref|YP_004797158.1| - 0.96 9.6 14.8 2.7 8.1 2.2 3.4 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor COG2 PF06148.6 gi|344212838|ref|YP_004797158.1| - 1 9.2 20.2 4.9 7.0 0.6 4.4 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 FH2 PF02181.18 gi|344212838|ref|YP_004797158.1| - 1.1 8.0 13.4 1.3 7.8 1.8 2.5 1 1 1 2 2 2 0 Formin Homology 2 Domain BAR_2 PF10455.4 gi|344212838|ref|YP_004797158.1| - 1.2 8.0 16.9 1.9 7.3 5.1 2.8 1 1 0 2 2 2 0 Bin/amphiphysin/Rvs domain for vesicular trafficking FlaC_arch PF05377.6 gi|344212838|ref|YP_004797158.1| - 1.2 9.1 22.4 0.93 9.4 0.9 5.0 4 1 0 4 4 3 0 Flagella accessory protein C (FlaC) EspB PF05802.6 gi|344212838|ref|YP_004797158.1| - 1.3 7.9 36.1 2.9 6.7 7.4 2.7 1 1 1 2 2 2 0 Enterobacterial EspB protein DUF972 PF06156.8 gi|344212838|ref|YP_004797158.1| - 1.5 9.1 18.5 0.25 11.6 0.6 3.8 1 1 1 2 2 1 0 Protein of unknown function (DUF972) Atg14 PF10186.4 gi|344212838|ref|YP_004797158.1| - 1.8 7.4 13.6 2.8 6.7 1.9 2.2 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Vps5 PF09325.5 gi|344212838|ref|YP_004797158.1| - 2.2 7.4 20.9 0.28 10.4 2.6 3.2 1 1 2 3 3 3 0 Vps5 C terminal like DASH_Dad4 PF08650.5 gi|344212838|ref|YP_004797158.1| - 3.5 7.5 7.1 14 5.6 0.0 3.6 3 1 1 4 4 4 0 DASH complex subunit Dad4 Fib_alpha PF08702.5 gi|344212838|ref|YP_004797158.1| - 3.9 7.5 21.0 2.9 8.0 3.2 3.9 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family APG6 PF04111.7 gi|344212838|ref|YP_004797158.1| - 4.8 6.1 26.2 2.8 6.9 4.9 2.6 1 1 2 3 3 3 0 Autophagy protein Apg6 SNARE PF05739.14 gi|344212838|ref|YP_004797158.1| - 4.8 6.9 39.9 0.53 9.9 1.7 6.6 4 2 2 6 6 5 0 SNARE domain Prominin PF05478.6 gi|344212838|ref|YP_004797158.1| - 5 4.5 20.9 1.6 6.2 2.1 2.2 1 1 2 3 3 3 0 Prominin DUF1759 PF03564.10 gi|344212838|ref|YP_004797158.1| - 5.9 6.6 13.1 1.5 8.6 0.3 3.9 2 2 2 4 4 4 0 Protein of unknown function (DUF1759) LXG PF04740.7 gi|344212838|ref|YP_004797158.1| - 6.3 6.5 34.0 0.82 9.4 3.0 3.9 1 1 3 4 4 4 0 LXG domain of WXG superfamily Sec20 PF03908.8 gi|344212838|ref|YP_004797158.1| - 6.3 6.5 14.5 2.9 7.6 0.4 4.3 2 2 2 4 4 4 0 Sec20 Syntaxin PF00804.20 gi|344212838|ref|YP_004797158.1| - 6.5 6.9 35.9 0.92 9.7 5.2 4.2 1 1 3 4 4 4 0 Syntaxin Muted PF14942.1 gi|344212838|ref|YP_004797158.1| - 6.6 6.6 20.2 1.9 8.3 3.8 3.0 1 1 2 3 3 3 0 Organelle biogenesis, Muted-like protein DUF1741 PF08427.5 gi|344212838|ref|YP_004797158.1| - 6.8 6.0 8.3 0.84 9.0 1.9 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1741) TPR_MLP1_2 PF07926.7 gi|344212838|ref|YP_004797158.1| - 7.1 6.3 29.6 7 6.4 7.4 3.0 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein Reo_sigmaC PF04582.7 gi|344212838|ref|YP_004797158.1| - 7.9 5.5 27.3 1.9 7.5 5.1 2.9 1 1 3 4 4 4 0 Reovirus sigma C capsid protein APG17 PF04108.7 gi|344212838|ref|YP_004797158.1| - 8.9 4.9 26.4 6e+03 -4.4 18.3 3.2 1 1 0 1 1 0 0 Autophagy protein Apg17 Mod_r PF07200.8 gi|344212838|ref|YP_004797158.1| - 9.2 6.1 16.9 5.5 6.9 1.6 3.3 2 2 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Peptidase_M32 PF02074.10 gi|344212839|ref|YP_004797159.1| - 1.6e-147 492.1 1.1 2e-147 491.8 0.8 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Peptidase_M20 PF01546.23 gi|344212840|ref|YP_004797160.1| - 1.6e-27 96.2 3.2 1.6e-27 96.2 2.2 1.3 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|344212840|ref|YP_004797160.1| - 3e-16 59.1 0.1 6.5e-16 58.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain T2SE PF00437.15 gi|344212841|ref|YP_004797161.1| - 4.4e-12 45.4 0.0 7.6e-12 44.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|344212841|ref|YP_004797161.1| - 5.1e-06 26.0 0.3 1.9e-05 24.2 0.2 2.1 1 0 0 1 1 1 1 KH domain IstB_IS21 PF01695.12 gi|344212841|ref|YP_004797161.1| - 0.00014 21.3 0.0 0.00024 20.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein PIN PF01850.16 gi|344212841|ref|YP_004797161.1| - 0.00016 21.9 0.0 0.00042 20.6 0.0 1.8 1 0 0 1 1 1 1 PIN domain AAA_17 PF13207.1 gi|344212841|ref|YP_004797161.1| - 0.00041 21.1 0.1 0.0018 19.0 0.0 2.3 1 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|344212841|ref|YP_004797161.1| - 0.00079 19.3 0.0 0.0033 17.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|344212841|ref|YP_004797161.1| - 0.0036 16.4 0.0 0.0068 15.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|344212841|ref|YP_004797161.1| - 0.0037 16.7 0.0 0.009 15.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Thymidylate_kin PF02223.12 gi|344212841|ref|YP_004797161.1| - 0.0082 15.5 0.0 0.02 14.2 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase AAA_16 PF13191.1 gi|344212841|ref|YP_004797161.1| - 0.011 15.7 0.0 0.17 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_19 PF13245.1 gi|344212841|ref|YP_004797161.1| - 0.017 14.8 0.1 0.06 13.0 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain AAA_30 PF13604.1 gi|344212841|ref|YP_004797161.1| - 0.029 13.9 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|344212841|ref|YP_004797161.1| - 0.032 13.9 0.0 0.072 12.8 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.1 gi|344212841|ref|YP_004797161.1| - 0.039 14.2 0.0 0.13 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|344212841|ref|YP_004797161.1| - 0.058 12.4 0.0 0.15 11.1 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.1 gi|344212841|ref|YP_004797161.1| - 0.058 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|344212841|ref|YP_004797161.1| - 0.062 12.6 0.4 0.16 11.3 0.3 1.7 1 1 0 1 1 1 0 AAA domain KH_2 PF07650.12 gi|344212841|ref|YP_004797161.1| - 0.075 12.6 0.5 0.2 11.2 0.3 1.7 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|344212841|ref|YP_004797161.1| - 0.077 12.6 0.4 0.27 10.9 0.3 1.9 1 0 0 1 1 1 0 KH domain PIN_4 PF13638.1 gi|344212841|ref|YP_004797161.1| - 0.13 12.3 0.0 0.5 10.4 0.0 2.0 1 1 0 1 1 1 0 PIN domain KTI12 PF08433.5 gi|344212841|ref|YP_004797161.1| - 0.19 10.9 0.0 0.37 9.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 YqcI_YcgG PF08892.6 gi|344212842|ref|YP_004797162.1| - 4.1e-76 255.3 0.0 4.7e-76 255.1 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family MF_alpha PF04648.7 gi|344212842|ref|YP_004797162.1| - 3.5 8.0 5.5 24 5.3 0.0 4.1 4 0 0 4 4 4 0 Yeast mating factor alpha hormone Isochorismatase PF00857.15 gi|344212843|ref|YP_004797163.1| - 9.9e-39 133.0 0.0 1.1e-38 132.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family TrmB PF01978.14 gi|344212844|ref|YP_004797164.1| - 0.00064 19.3 0.1 0.00083 19.0 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|344212844|ref|YP_004797164.1| - 0.02 14.6 0.1 0.051 13.3 0.0 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|344212844|ref|YP_004797164.1| - 0.023 14.0 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RelB_N PF12910.2 gi|344212844|ref|YP_004797164.1| - 0.042 13.2 0.0 0.064 12.6 0.0 1.4 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin stability system N-terminal GntR PF00392.16 gi|344212844|ref|YP_004797164.1| - 0.043 13.2 0.1 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|344212844|ref|YP_004797164.1| - 0.054 13.1 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|344212844|ref|YP_004797164.1| - 0.057 13.0 0.0 0.081 12.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain ABC_tran PF00005.22 gi|344212846|ref|YP_004797166.1| - 2.1e-38 131.7 0.0 1.6e-20 73.7 0.0 2.9 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|344212846|ref|YP_004797166.1| - 3.4e-14 53.4 0.1 0.016 15.2 0.0 4.3 3 1 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|344212846|ref|YP_004797166.1| - 4.3e-13 48.9 3.6 0.00095 18.4 0.0 4.2 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|344212846|ref|YP_004797166.1| - 2.3e-11 43.0 0.8 4.4e-11 42.1 0.6 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|344212846|ref|YP_004797166.1| - 3.6e-10 40.6 0.1 7e-05 23.6 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|344212846|ref|YP_004797166.1| - 2.5e-07 30.9 0.2 0.0045 17.1 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344212846|ref|YP_004797166.1| - 6.5e-07 29.5 0.4 0.0048 16.9 0.0 2.8 2 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|344212846|ref|YP_004797166.1| - 1.4e-06 28.5 0.0 0.05 13.8 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|344212846|ref|YP_004797166.1| - 5.9e-06 26.4 0.0 0.14 12.3 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|344212846|ref|YP_004797166.1| - 3e-05 24.3 0.0 0.57 10.5 0.0 3.0 3 1 0 3 3 2 2 AAA domain DUF258 PF03193.11 gi|344212846|ref|YP_004797166.1| - 4.1e-05 22.8 0.0 0.09 11.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|344212846|ref|YP_004797166.1| - 7.2e-05 23.2 0.1 0.55 10.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|344212846|ref|YP_004797166.1| - 7.8e-05 22.3 0.0 0.22 11.1 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_25 PF13481.1 gi|344212846|ref|YP_004797166.1| - 0.00015 21.2 2.0 0.24 10.8 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_33 PF13671.1 gi|344212846|ref|YP_004797166.1| - 0.00017 21.5 0.0 0.029 14.2 0.0 2.7 2 1 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|344212846|ref|YP_004797166.1| - 0.00036 20.3 0.1 1.8 8.5 0.0 2.9 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit Fer4 PF00037.22 gi|344212846|ref|YP_004797166.1| - 0.00055 19.4 1.3 0.00055 19.4 0.9 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain MobB PF03205.9 gi|344212846|ref|YP_004797166.1| - 0.00058 19.5 0.1 0.39 10.4 0.0 2.9 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B RuvB_N PF05496.7 gi|344212846|ref|YP_004797166.1| - 0.00064 18.8 0.0 0.28 10.2 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Fer4_6 PF12837.2 gi|344212846|ref|YP_004797166.1| - 0.00071 19.3 14.1 0.0022 17.7 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.1 gi|344212846|ref|YP_004797166.1| - 0.00096 18.6 0.2 1.9 8.1 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain Rad17 PF03215.10 gi|344212846|ref|YP_004797166.1| - 0.0023 16.7 0.0 0.48 9.0 0.0 2.4 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|344212846|ref|YP_004797166.1| - 0.0023 17.8 0.0 3.3 7.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.1 gi|344212846|ref|YP_004797166.1| - 0.006 16.1 0.1 2.7 7.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|344212846|ref|YP_004797166.1| - 0.0061 16.0 0.0 1.4 8.2 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|344212846|ref|YP_004797166.1| - 0.0081 15.0 0.0 0.75 8.5 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_28 PF13521.1 gi|344212846|ref|YP_004797166.1| - 0.0096 15.8 0.1 1.7 8.6 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|344212846|ref|YP_004797166.1| - 0.01 15.3 1.2 0.82 9.0 0.1 2.6 2 2 0 2 2 2 0 AAA-like domain AAA_5 PF07728.9 gi|344212846|ref|YP_004797166.1| - 0.011 15.4 0.1 4.6 6.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|344212846|ref|YP_004797166.1| - 0.017 14.8 0.5 9.1 5.9 0.0 3.0 3 0 0 3 3 3 0 NTPase Thymidylate_kin PF02223.12 gi|344212846|ref|YP_004797166.1| - 0.023 14.0 0.0 7.5 5.8 0.0 2.5 2 0 0 2 2 2 0 Thymidylate kinase Fer4_2 PF12797.2 gi|344212846|ref|YP_004797166.1| - 0.061 13.2 12.2 0.27 11.2 1.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_19 PF13245.1 gi|344212846|ref|YP_004797166.1| - 0.063 13.0 1.2 6.1 6.6 0.0 3.3 3 0 0 3 3 3 0 Part of AAA domain Miro PF08477.8 gi|344212846|ref|YP_004797166.1| - 0.064 13.7 0.0 6.1 7.3 0.0 2.6 2 0 0 2 2 2 0 Miro-like protein DUF87 PF01935.12 gi|344212846|ref|YP_004797166.1| - 0.067 12.9 0.1 15 5.3 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 ArgK PF03308.11 gi|344212846|ref|YP_004797166.1| - 0.083 11.6 0.4 3.3 6.4 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_7 PF12838.2 gi|344212846|ref|YP_004797166.1| - 0.096 13.0 11.2 0.25 11.7 7.8 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|344212846|ref|YP_004797166.1| - 0.22 9.9 0.0 5.7 5.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_9 PF13187.1 gi|344212846|ref|YP_004797166.1| - 0.38 11.0 12.2 0.73 10.1 8.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344212846|ref|YP_004797166.1| - 0.92 9.4 7.9 1.8 8.4 5.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344212846|ref|YP_004797166.1| - 2.5 7.9 13.8 2.5 7.9 1.1 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344212846|ref|YP_004797166.1| - 3 8.6 10.4 10 6.9 7.3 1.9 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|344212846|ref|YP_004797166.1| - 8.2 7.0 14.3 2.4 8.7 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Peptidase_M54 PF07998.6 gi|344212848|ref|YP_004797168.1| - 6e-21 75.0 0.0 7.6e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|344212848|ref|YP_004797168.1| - 4.1e-05 23.3 0.0 4.1e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|344212848|ref|YP_004797168.1| - 9.2e-05 22.5 0.0 0.0001 22.4 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|344212848|ref|YP_004797168.1| - 0.00048 20.6 0.0 0.00062 20.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|344212848|ref|YP_004797168.1| - 0.0016 17.9 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|344212848|ref|YP_004797168.1| - 0.0021 18.0 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|344212848|ref|YP_004797168.1| - 0.0039 16.1 0.0 0.0052 15.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF1025 PF06262.6 gi|344212848|ref|YP_004797168.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Peptidase_M43 PF05572.8 gi|344212848|ref|YP_004797168.1| - 0.017 14.7 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Metallopep PF12044.3 gi|344212848|ref|YP_004797168.1| - 0.042 12.3 0.2 0.058 11.8 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family DUF3152 PF11350.3 gi|344212848|ref|YP_004797168.1| - 0.2 11.1 0.8 0.3 10.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3152) UPF0146 PF03686.8 gi|344212849|ref|YP_004797169.1| - 1.1e-28 99.6 0.0 1.2e-28 99.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|344212849|ref|YP_004797169.1| - 0.0014 18.3 0.0 0.0016 18.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain NTP_transf_3 PF12804.2 gi|344212849|ref|YP_004797169.1| - 0.026 14.6 0.2 0.031 14.3 0.1 1.1 1 0 0 1 1 1 0 MobA-like NTP transferase domain DUF348 PF03990.9 gi|344212849|ref|YP_004797169.1| - 0.1 12.1 0.5 0.46 10.0 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF348) HAD_2 PF13419.1 gi|344212850|ref|YP_004797170.1| - 4e-14 53.2 2.3 3.7e-12 46.8 1.6 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|344212850|ref|YP_004797170.1| - 2.4e-10 41.1 1.0 5e-10 40.1 0.7 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344212850|ref|YP_004797170.1| - 4.9e-06 26.1 1.1 3.8e-05 23.2 0.2 2.6 2 1 0 2 2 2 1 HAD-hyrolase-like DUF3792 PF12670.2 gi|344212851|ref|YP_004797171.1| - 0.021 14.7 1.6 0.021 14.7 1.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3792) Exosortase_EpsH PF09721.5 gi|344212851|ref|YP_004797171.1| - 0.18 10.9 8.7 0.22 10.7 6.0 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) YfhO PF09586.5 gi|344212851|ref|YP_004797171.1| - 0.33 8.9 2.0 0.37 8.7 1.4 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO CAAD PF14159.1 gi|344212851|ref|YP_004797171.1| - 0.41 10.3 7.2 0.088 12.4 0.9 2.1 1 1 1 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Prion_bPrPp PF11587.3 gi|344212851|ref|YP_004797171.1| - 0.43 10.2 3.4 10 5.8 0.1 2.5 2 0 0 2 2 2 0 Major prion protein bPrPp - N terminal F420_oxidored PF03807.12 gi|344212852|ref|YP_004797172.1| - 7.1e-19 68.0 0.2 1.1e-18 67.3 0.2 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|344212852|ref|YP_004797172.1| - 2.5e-05 24.0 0.0 3.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|344212852|ref|YP_004797172.1| - 0.00052 19.4 0.1 0.00071 19.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|344212852|ref|YP_004797172.1| - 0.0026 17.7 3.2 0.0026 17.7 2.2 1.8 1 1 0 2 2 2 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|344212852|ref|YP_004797172.1| - 0.004 17.4 0.1 0.0063 16.8 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|344212852|ref|YP_004797172.1| - 0.0064 16.1 0.5 0.012 15.2 0.4 1.5 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|344212852|ref|YP_004797172.1| - 0.23 11.4 4.7 0.78 9.7 3.2 2.2 1 1 0 1 1 1 0 NADH(P)-binding Response_reg PF00072.19 gi|344212853|ref|YP_004797173.1| - 2.5e-19 69.3 0.0 3.8e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|344212853|ref|YP_004797173.1| - 6.3e-08 32.9 0.0 2.2e-07 31.1 0.0 1.9 3 0 0 3 3 3 1 PAS domain PAS_4 PF08448.5 gi|344212853|ref|YP_004797173.1| - 2.3e-06 27.5 0.0 7.4e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.10 gi|344212853|ref|YP_004797173.1| - 0.00049 20.1 0.0 0.00081 19.4 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_3 PF08447.6 gi|344212853|ref|YP_004797173.1| - 0.043 13.9 0.1 0.22 11.6 0.0 2.0 2 0 0 2 2 2 0 PAS fold PAS_11 PF14598.1 gi|344212853|ref|YP_004797173.1| - 0.068 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 PAS domain Thioredoxin PF00085.15 gi|344212854|ref|YP_004797174.1| - 1.8e-21 75.7 0.0 2.1e-21 75.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|344212854|ref|YP_004797174.1| - 2.8e-07 30.5 0.1 0.00064 19.7 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|344212854|ref|YP_004797174.1| - 3e-07 30.5 0.2 1.3e-05 25.3 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_9 PF14595.1 gi|344212854|ref|YP_004797174.1| - 1.7e-05 24.3 0.1 2e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|344212854|ref|YP_004797174.1| - 0.00019 21.1 0.0 0.00021 21.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|344212854|ref|YP_004797174.1| - 0.0003 20.4 0.2 0.29 10.8 0.1 2.0 1 1 1 2 2 2 2 AhpC/TSA family Redoxin PF08534.5 gi|344212854|ref|YP_004797174.1| - 0.0007 19.1 0.4 0.077 12.5 0.0 2.0 1 1 1 2 2 2 2 Redoxin DSBA PF01323.15 gi|344212854|ref|YP_004797174.1| - 0.00086 18.9 0.3 0.15 11.6 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Glutaredoxin PF00462.19 gi|344212854|ref|YP_004797174.1| - 0.0022 17.9 0.1 0.0045 16.9 0.0 1.6 1 1 1 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|344212854|ref|YP_004797174.1| - 0.017 15.3 0.1 0.019 15.2 0.1 1.2 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) DUF4371 PF14291.1 gi|344212854|ref|YP_004797174.1| - 0.025 14.1 0.1 0.027 13.9 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) Thioredoxin_5 PF13743.1 gi|344212854|ref|YP_004797174.1| - 0.05 13.1 0.2 0.056 13.0 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_7 PF13899.1 gi|344212854|ref|YP_004797174.1| - 0.2 11.6 2.7 0.21 11.6 0.1 2.2 2 1 0 2 2 2 0 Thioredoxin-like Sec61_beta PF03911.11 gi|344212855|ref|YP_004797175.1| - 0.00021 21.0 0.0 0.00026 20.7 0.0 1.2 1 0 0 1 1 1 1 Sec61beta family EutC PF05985.6 gi|344212856|ref|YP_004797176.1| - 0.12 11.3 0.0 0.22 10.5 0.0 1.5 1 1 0 1 1 1 0 Ethanolamine ammonia-lyase light chain (EutC) DUF402 PF04167.8 gi|344212857|ref|YP_004797177.1| - 3.3e-21 74.8 1.3 6.8e-21 73.8 0.9 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|344212857|ref|YP_004797177.1| - 1e-06 28.7 0.2 5.7e-06 26.3 0.0 2.4 2 0 0 2 2 2 1 S1 RNA binding domain S1_2 PF13509.1 gi|344212857|ref|YP_004797177.1| - 0.032 14.1 0.0 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 S1 domain Poly_export PF02563.11 gi|344212857|ref|YP_004797177.1| - 0.041 13.6 0.1 1 9.1 0.0 3.0 2 0 0 2 2 2 0 Polysaccharide biosynthesis/export protein LVIVD PF08309.6 gi|344212858|ref|YP_004797178.1| - 6.6e-15 53.8 1.7 1.6e-07 30.2 0.1 5.7 7 0 0 7 7 7 3 LVIVD repeat Beta_propel PF09826.4 gi|344212858|ref|YP_004797178.1| - 0.082 11.2 0.0 2 6.6 0.0 2.4 2 0 0 2 2 2 0 Beta propeller domain Tub_2 PF04525.7 gi|344212859|ref|YP_004797179.1| - 3.8e-09 36.1 1.2 0.00019 20.9 0.1 3.3 1 1 2 3 3 3 3 Tubby C 2 Big_3_2 PF12245.3 gi|344212859|ref|YP_004797179.1| - 0.0061 16.0 0.7 1.1 8.8 0.1 2.8 1 1 1 2 2 2 2 Bacterial Ig-like domain (group 3) Scramblase PF03803.10 gi|344212859|ref|YP_004797179.1| - 0.029 13.4 0.1 8.7 5.3 0.0 2.3 1 1 0 1 1 1 0 Scramblase ABC_tran PF00005.22 gi|344212860|ref|YP_004797180.1| - 1.2e-21 77.4 0.0 1e-10 42.0 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|344212860|ref|YP_004797180.1| - 2.1e-11 43.5 0.0 0.14 11.3 0.0 4.1 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|344212860|ref|YP_004797180.1| - 3.2e-10 40.4 4.7 0.0022 18.0 0.0 4.3 4 0 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|344212860|ref|YP_004797180.1| - 4.8e-09 35.6 0.0 0.0015 18.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|344212860|ref|YP_004797180.1| - 3.4e-06 26.5 0.0 0.097 12.0 0.0 3.1 4 0 0 4 4 2 2 AAA domain AAA_16 PF13191.1 gi|344212860|ref|YP_004797180.1| - 4e-06 26.9 0.1 0.1 12.5 0.0 3.4 3 0 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|344212860|ref|YP_004797180.1| - 8.6e-06 25.9 0.2 0.21 11.7 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|344212860|ref|YP_004797180.1| - 7.7e-05 23.1 0.0 0.57 10.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|344212860|ref|YP_004797180.1| - 0.0001 22.2 0.0 0.45 10.3 0.0 3.3 3 0 0 3 3 3 2 AAA domain KaiC PF06745.8 gi|344212860|ref|YP_004797180.1| - 0.00015 20.9 0.1 0.082 12.0 0.0 2.8 3 0 0 3 3 3 1 KaiC DUF258 PF03193.11 gi|344212860|ref|YP_004797180.1| - 0.00028 20.1 0.0 0.73 9.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 DnaJ_CXXCXGXG PF00684.14 gi|344212860|ref|YP_004797180.1| - 0.00036 20.5 13.3 0.019 14.9 1.4 3.6 4 0 0 4 4 3 1 DnaJ central domain AAA_18 PF13238.1 gi|344212860|ref|YP_004797180.1| - 0.00046 20.4 0.0 1.1 9.6 0.0 3.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|344212860|ref|YP_004797180.1| - 0.00064 19.6 0.0 0.8 9.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|344212860|ref|YP_004797180.1| - 0.0013 18.1 4.8 0.14 11.5 0.0 3.4 3 1 0 3 3 3 1 AAA-like domain AAA_15 PF13175.1 gi|344212860|ref|YP_004797180.1| - 0.003 16.6 0.0 0.42 9.6 0.0 3.1 4 0 0 4 4 4 1 AAA ATPase domain Zn-ribbon_8 PF09723.5 gi|344212860|ref|YP_004797180.1| - 0.0036 17.2 15.2 1.6 8.7 0.3 4.4 4 0 0 4 4 4 1 Zinc ribbon domain APS_kinase PF01583.15 gi|344212860|ref|YP_004797180.1| - 0.0054 16.3 0.1 4.2 7.0 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_17 PF13207.1 gi|344212860|ref|YP_004797180.1| - 0.012 16.3 10.2 0.79 10.5 0.2 4.5 5 1 1 6 6 4 0 AAA domain DUF2075 PF09848.4 gi|344212860|ref|YP_004797180.1| - 0.015 14.3 0.1 3.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|344212860|ref|YP_004797180.1| - 0.021 14.4 0.0 1.6 8.3 0.0 2.5 2 0 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.13 gi|344212860|ref|YP_004797180.1| - 0.025 14.0 0.0 0.85 9.0 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase cobW PF02492.14 gi|344212860|ref|YP_004797180.1| - 0.041 13.3 0.2 2.4 7.5 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain PRK PF00485.13 gi|344212860|ref|YP_004797180.1| - 0.047 13.2 0.1 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Arch_ATPase PF01637.13 gi|344212860|ref|YP_004797180.1| - 0.06 13.0 0.0 8.5 5.9 0.0 2.4 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|344212860|ref|YP_004797180.1| - 0.061 13.0 0.3 22 4.9 0.0 3.1 2 0 0 2 2 2 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|344212860|ref|YP_004797180.1| - 0.07 13.0 0.0 7.6 6.5 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase MobB PF03205.9 gi|344212860|ref|YP_004797180.1| - 0.076 12.7 0.4 3 7.5 0.1 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|344212860|ref|YP_004797180.1| - 0.17 12.0 0.0 5.2 7.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Zn_Tnp_IS91 PF14319.1 gi|344212860|ref|YP_004797180.1| - 0.44 10.0 1.3 2.1 7.9 0.0 2.6 3 0 0 3 3 2 0 Transposase zinc-binding domain DUF164 PF02591.10 gi|344212860|ref|YP_004797180.1| - 0.98 9.3 6.8 14 5.6 0.4 3.8 3 0 0 3 3 3 0 Putative zinc ribbon domain YhfH PF14149.1 gi|344212860|ref|YP_004797180.1| - 5.1 6.9 8.7 9.7 6.0 0.0 3.4 3 0 0 3 3 2 0 YhfH-like protein DUF4149 PF13664.1 gi|344212861|ref|YP_004797181.1| - 3 7.9 11.8 0.28 11.2 0.7 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF4149) Peptidase_S9 PF00326.16 gi|344212862|ref|YP_004797182.1| - 5.1e-44 150.0 0.1 7.5e-44 149.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|344212862|ref|YP_004797182.1| - 6.3e-13 48.7 0.1 2.1e-12 46.9 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|344212862|ref|YP_004797182.1| - 2.2e-09 37.5 2.4 6.2e-08 32.8 1.6 2.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|344212862|ref|YP_004797182.1| - 5e-06 26.1 0.2 0.091 12.1 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9_N PF02897.10 gi|344212862|ref|YP_004797182.1| - 1.2e-05 24.1 0.0 2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Pectate_lyase22 PF14583.1 gi|344212862|ref|YP_004797182.1| - 0.00016 20.3 0.2 0.0091 14.4 0.1 2.4 2 0 0 2 2 2 1 Oligogalacturonate lyase PD40 PF07676.7 gi|344212862|ref|YP_004797182.1| - 0.00021 20.8 0.9 0.079 12.6 0.0 4.4 6 0 0 6 6 6 1 WD40-like Beta Propeller Repeat Peptidase_S28 PF05577.7 gi|344212862|ref|YP_004797182.1| - 0.00022 19.9 0.0 0.00035 19.2 0.0 1.2 1 0 0 1 1 1 1 Serine carboxypeptidase S28 DPPIV_N PF00930.16 gi|344212862|ref|YP_004797182.1| - 0.0059 15.2 0.0 4.1 5.9 0.0 3.2 2 1 1 3 3 3 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region AXE1 PF05448.7 gi|344212862|ref|YP_004797182.1| - 0.014 13.8 0.0 0.14 10.5 0.0 2.0 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Kelch_4 PF13418.1 gi|344212862|ref|YP_004797182.1| - 0.015 15.0 0.7 0.6 9.9 0.0 3.2 4 0 0 4 4 4 0 Galactose oxidase, central domain DLH PF01738.13 gi|344212862|ref|YP_004797182.1| - 0.035 13.3 0.0 0.14 11.4 0.0 1.8 1 1 0 1 1 1 0 Dienelactone hydrolase family Kelch_3 PF13415.1 gi|344212862|ref|YP_004797182.1| - 0.64 10.2 5.3 20 5.4 0.0 4.4 5 0 0 5 5 4 0 Galactose oxidase, central domain PSII_BNR PF14870.1 gi|344212863|ref|YP_004797183.1| - 7.9e-07 28.3 0.6 0.0021 17.1 0.1 3.3 2 1 2 4 4 4 2 Photosynthesis system II assembly factor YCF48 BNR PF02012.15 gi|344212863|ref|YP_004797183.1| - 6.6e-06 25.1 21.8 0.058 13.2 0.6 5.5 5 0 0 5 5 5 3 BNR/Asp-box repeat DUF4185 PF13810.1 gi|344212863|ref|YP_004797183.1| - 0.035 13.0 4.5 0.44 9.3 0.1 3.5 1 1 3 4 4 4 0 Domain of unknown function (DUF4185) BNR_2 PF13088.1 gi|344212863|ref|YP_004797183.1| - 0.65 9.2 10.4 1.7 7.8 0.4 3.5 1 1 0 2 2 2 0 BNR repeat-like domain BNR_3 PF13859.1 gi|344212863|ref|YP_004797183.1| - 2.6 7.0 4.2 0.7 8.9 0.2 2.0 3 0 0 3 3 3 0 BNR repeat-like domain Herpes_US9 PF06072.6 gi|344212864|ref|YP_004797184.1| - 0.079 12.8 2.4 1.9 8.3 0.1 2.3 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 FAD_binding_3 PF01494.14 gi|344212865|ref|YP_004797185.1| - 4.3e-17 62.2 2.9 1e-10 41.2 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|344212865|ref|YP_004797185.1| - 1.6e-12 47.0 2.3 2.2e-07 30.1 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|344212865|ref|YP_004797185.1| - 9.7e-09 34.6 0.5 5.9e-06 25.4 0.3 2.3 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|344212865|ref|YP_004797185.1| - 3.4e-07 29.6 1.2 5.1e-07 29.1 0.9 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|344212865|ref|YP_004797185.1| - 1.1e-06 28.6 0.1 2e-06 27.8 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|344212865|ref|YP_004797185.1| - 1.3e-06 27.2 0.0 4.1e-06 25.5 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|344212865|ref|YP_004797185.1| - 1.2e-05 24.3 1.8 1.4e-05 24.1 0.4 1.7 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|344212865|ref|YP_004797185.1| - 0.00024 21.0 0.7 0.00068 19.6 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|344212865|ref|YP_004797185.1| - 0.00067 18.8 0.1 0.0011 18.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|344212865|ref|YP_004797185.1| - 0.0014 17.5 0.1 0.002 17.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|344212865|ref|YP_004797185.1| - 0.0037 17.3 0.0 0.0064 16.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|344212865|ref|YP_004797185.1| - 0.0042 17.1 0.0 0.023 14.6 0.0 2.1 2 0 0 2 2 2 1 NADH(P)-binding Trp_halogenase PF04820.9 gi|344212865|ref|YP_004797185.1| - 0.0052 15.4 0.6 1.3 7.5 0.2 2.5 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|344212865|ref|YP_004797185.1| - 0.011 16.0 0.8 0.51 10.7 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|344212865|ref|YP_004797185.1| - 0.019 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|344212865|ref|YP_004797185.1| - 0.071 13.3 0.1 0.14 12.4 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|344212865|ref|YP_004797185.1| - 0.15 11.7 0.7 1.2 8.9 0.0 2.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding UPF0118 PF01594.11 gi|344212866|ref|YP_004797186.1| - 4.3e-37 127.8 35.7 3.4e-33 115.0 14.8 2.0 2 0 0 2 2 2 2 Domain of unknown function DUF20 Rhodanese PF00581.15 gi|344212867|ref|YP_004797187.1| - 2.6e-37 127.6 0.0 1.5e-19 70.4 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|344212868|ref|YP_004797188.1| - 6e-36 123.2 0.2 1.4e-18 67.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Beta-Casp PF10996.3 gi|344212870|ref|YP_004797190.1| - 2.1e-20 72.9 0.0 3.9e-20 72.0 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|344212870|ref|YP_004797190.1| - 1.5e-14 54.1 3.4 1.5e-14 54.1 2.4 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|344212870|ref|YP_004797190.1| - 7.4e-11 41.6 0.0 1.5e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|344212870|ref|YP_004797190.1| - 3e-10 39.9 0.2 5.5e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|344212870|ref|YP_004797190.1| - 0.0079 15.9 0.1 0.019 14.6 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RHH_1 PF01402.16 gi|344212871|ref|YP_004797191.1| - 0.00054 19.7 0.4 0.00081 19.1 0.3 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2238 PF09997.4 gi|344212872|ref|YP_004797192.1| - 0.041 13.2 8.9 0.021 14.2 2.0 2.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2238) Cupin_2 PF07883.6 gi|344212873|ref|YP_004797193.1| - 2.6e-18 65.2 0.9 3.2e-18 64.9 0.6 1.1 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|344212873|ref|YP_004797193.1| - 7.4e-09 35.3 0.0 8.7e-09 35.1 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|344212873|ref|YP_004797193.1| - 7.8e-06 25.6 0.1 9.7e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|344212873|ref|YP_004797193.1| - 0.00011 21.6 0.0 0.00014 21.2 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|344212873|ref|YP_004797193.1| - 0.00091 18.8 0.0 0.00095 18.8 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|344212873|ref|YP_004797193.1| - 0.016 14.6 0.0 0.022 14.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF861) DUF3359 PF11839.3 gi|344212874|ref|YP_004797194.1| - 6.5 7.1 7.2 1.4 9.3 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3359) DUF21 PF01595.15 gi|344212875|ref|YP_004797195.1| - 2.4e-28 98.6 0.0 3.2e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|344212875|ref|YP_004797195.1| - 3.7e-14 52.2 1.0 5.1e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 CBS domain MSP1b PF03429.8 gi|344212875|ref|YP_004797195.1| - 0.082 10.7 0.0 0.11 10.3 0.0 1.1 1 0 0 1 1 1 0 Major surface protein 1B adh_short PF00106.20 gi|344212876|ref|YP_004797196.1| - 7.9e-19 68.1 1.2 1.6e-18 67.2 0.8 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344212876|ref|YP_004797196.1| - 6.3e-07 29.2 0.4 9.4e-07 28.6 0.3 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|344212876|ref|YP_004797196.1| - 1.7e-05 24.7 0.0 2.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|344212876|ref|YP_004797196.1| - 2.2e-05 24.0 0.0 3.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|344212876|ref|YP_004797196.1| - 0.0033 17.4 0.3 0.0073 16.3 0.1 1.7 2 0 0 2 2 2 1 NADH(P)-binding Glyco_trans_4_4 PF13579.1 gi|344212876|ref|YP_004797196.1| - 0.068 13.3 0.5 2.1 8.4 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain DUF836 PF05768.9 gi|344212877|ref|YP_004797197.1| - 9.4e-16 57.8 0.1 1.1e-15 57.6 0.0 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|344212877|ref|YP_004797197.1| - 1.9e-07 30.9 0.2 4.4e-07 29.7 0.0 1.6 1 1 1 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|344212877|ref|YP_004797197.1| - 1.9e-06 27.5 0.0 2.2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain KaiB PF07689.7 gi|344212877|ref|YP_004797197.1| - 0.052 13.0 0.0 0.076 12.4 0.0 1.2 1 0 0 1 1 1 0 KaiB domain TraF PF13728.1 gi|344212877|ref|YP_004797197.1| - 0.078 12.4 0.0 0.56 9.6 0.0 1.8 1 1 1 2 2 2 0 F plasmid transfer operon protein TrbC PF04956.8 gi|344212878|ref|YP_004797198.1| - 0.33 11.0 4.5 0.1 12.6 0.4 1.9 2 0 0 2 2 2 0 TrbC/VIRB2 family TMP-TENI PF02581.12 gi|344212879|ref|YP_004797199.1| - 4.3e-60 201.9 3.9 5.2e-60 201.6 2.7 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|344212879|ref|YP_004797199.1| - 1.2e-07 31.0 4.8 1.7e-07 30.6 3.3 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|344212879|ref|YP_004797199.1| - 7.6e-05 22.0 8.7 9.2e-05 21.7 6.0 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|344212879|ref|YP_004797199.1| - 0.0028 16.6 1.3 0.0028 16.6 0.9 1.8 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|344212879|ref|YP_004797199.1| - 0.86 8.8 5.4 3.5 6.8 3.7 1.8 1 1 1 2 2 2 0 PcrB family PhoU PF01895.14 gi|344212880|ref|YP_004797200.1| - 3.3e-13 49.8 1.3 3e-09 37.1 0.1 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|344212880|ref|YP_004797200.1| - 1.1e-06 28.2 0.0 2.1e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE IMPDH PF00478.20 gi|344212880|ref|YP_004797200.1| - 0.0081 15.0 0.2 0.071 11.9 0.0 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DUF892 PF05974.7 gi|344212880|ref|YP_004797200.1| - 0.013 15.3 1.2 0.032 14.0 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF892) PhoU PF01895.14 gi|344212881|ref|YP_004797201.1| - 1.5e-33 115.1 13.0 2.6e-18 66.2 1.2 2.1 2 0 0 2 2 2 2 PhoU domain DUF148 PF02520.12 gi|344212881|ref|YP_004797201.1| - 0.025 14.3 0.0 0.055 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF148 Borrelia_REV PF03978.8 gi|344212881|ref|YP_004797201.1| - 0.063 13.0 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 Borrelia burgdorferi REV protein ABC_tran PF00005.22 gi|344212882|ref|YP_004797202.1| - 1.9e-31 109.1 0.0 3.6e-31 108.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212882|ref|YP_004797202.1| - 1.9e-13 51.0 0.0 1.4e-07 31.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344212882|ref|YP_004797202.1| - 3.5e-08 32.9 0.4 5.4e-06 25.7 0.3 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|344212882|ref|YP_004797202.1| - 4.2e-05 22.7 0.0 0.049 12.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|344212882|ref|YP_004797202.1| - 8.9e-05 22.5 0.1 0.0053 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344212882|ref|YP_004797202.1| - 0.0002 21.4 0.0 0.00068 19.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344212882|ref|YP_004797202.1| - 0.00037 19.9 0.0 0.00096 18.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|344212882|ref|YP_004797202.1| - 0.0015 17.7 0.0 0.003 16.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|344212882|ref|YP_004797202.1| - 0.0061 16.2 0.0 1.5 8.5 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain DeoRC PF00455.17 gi|344212882|ref|YP_004797202.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain AAA_23 PF13476.1 gi|344212882|ref|YP_004797202.1| - 0.013 15.7 0.0 0.04 14.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|344212882|ref|YP_004797202.1| - 0.021 14.2 0.0 0.036 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|344212882|ref|YP_004797202.1| - 0.026 13.9 0.0 0.086 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|344212882|ref|YP_004797202.1| - 0.027 13.1 0.0 0.039 12.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|344212882|ref|YP_004797202.1| - 0.051 13.4 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain NYN_YacP PF05991.6 gi|344212882|ref|YP_004797202.1| - 0.1 12.3 0.1 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 YacP-like NYN domain AAA_17 PF13207.1 gi|344212882|ref|YP_004797202.1| - 0.11 13.2 1.6 0.25 12.1 0.3 2.4 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|344212883|ref|YP_004797203.1| - 1.4e-16 60.5 18.9 1.4e-16 60.5 13.1 7.6 2 2 2 6 6 6 1 Binding-protein-dependent transport system inner membrane component DUF2371 PF10177.4 gi|344212883|ref|YP_004797203.1| - 3.7 7.4 5.9 3.5 7.4 0.1 3.2 2 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) BPD_transp_1 PF00528.17 gi|344212884|ref|YP_004797204.1| - 1.9e-19 69.9 10.7 1.9e-19 69.9 7.4 3.0 2 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|344212885|ref|YP_004797205.1| - 2.7e-35 122.2 6.0 3.9e-35 121.6 4.1 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|344212885|ref|YP_004797205.1| - 5.8e-12 44.9 0.1 1.2e-11 43.9 0.1 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|344212885|ref|YP_004797205.1| - 0.16 12.0 0.7 0.38 10.8 0.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.14 gi|344212886|ref|YP_004797206.1| - 1.1e-22 80.2 2.9 1.7e-16 60.4 0.3 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|344212886|ref|YP_004797206.1| - 1.4e-08 34.2 0.0 2.7e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ISG65-75 PF11727.3 gi|344212886|ref|YP_004797206.1| - 0.036 13.1 0.1 0.061 12.3 0.0 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein CK2S PF15011.1 gi|344212887|ref|YP_004797207.1| - 0.0015 18.3 0.2 0.93 9.2 0.0 3.0 2 1 1 3 3 3 2 Casein Kinase 2 substrate MerR-DNA-bind PF09278.6 gi|344212887|ref|YP_004797207.1| - 8.4 6.8 10.9 41 4.6 0.3 3.5 3 0 0 3 3 3 0 MerR, DNA binding Rhodanese PF00581.15 gi|344212888|ref|YP_004797208.1| - 8.8e-15 55.0 0.0 1.2e-14 54.6 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain NUDIX PF00293.23 gi|344212889|ref|YP_004797209.1| - 6.3e-13 48.5 0.4 8.9e-13 48.0 0.3 1.3 1 0 0 1 1 1 1 NUDIX domain Thioredoxin_5 PF13743.1 gi|344212891|ref|YP_004797211.1| - 0.081 12.4 0.8 0.1 12.1 0.0 1.5 2 0 0 2 2 2 0 Thioredoxin CEP76-C2 PF15627.1 gi|344212891|ref|YP_004797211.1| - 0.12 11.8 0.1 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 CEP76 C2 domain Acetyltransf_1 PF00583.19 gi|344212893|ref|YP_004797213.1| - 3e-18 65.6 0.1 4.1e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344212893|ref|YP_004797213.1| - 2.4e-14 53.4 0.0 2.7e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344212893|ref|YP_004797213.1| - 9.5e-10 38.5 0.0 1.3e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344212893|ref|YP_004797213.1| - 1.4e-09 37.9 0.0 2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344212893|ref|YP_004797213.1| - 3.1e-07 30.4 0.0 5.4e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344212893|ref|YP_004797213.1| - 4.9e-07 29.4 0.0 7.4e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|344212893|ref|YP_004797213.1| - 4.8e-06 26.8 0.0 5.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344212893|ref|YP_004797213.1| - 0.0019 18.0 0.0 0.0029 17.4 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|344212893|ref|YP_004797213.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|344212893|ref|YP_004797213.1| - 0.05 13.2 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|344212893|ref|YP_004797213.1| - 0.059 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Aconitase PF00330.15 gi|344212894|ref|YP_004797214.1| - 1.8e-100 336.6 0.5 5.8e-69 232.7 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|344212894|ref|YP_004797214.1| - 5.8e-21 74.9 0.0 1.1e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.12 gi|344212894|ref|YP_004797214.1| - 0.11 12.1 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 Barwin family Prominin PF05478.6 gi|344212894|ref|YP_004797214.1| - 0.31 8.5 0.0 0.43 8.0 0.0 1.1 1 0 0 1 1 1 0 Prominin dUTPase PF00692.14 gi|344212895|ref|YP_004797215.1| - 1.1e-10 41.1 0.0 1.4e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase HTH_10 PF04967.7 gi|344212896|ref|YP_004797216.1| - 8.1e-15 54.1 0.0 1.3e-14 53.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344212896|ref|YP_004797216.1| - 0.00057 19.5 0.1 0.0035 16.9 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|344212896|ref|YP_004797216.1| - 0.0037 16.7 1.1 0.0056 16.2 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|344212896|ref|YP_004797216.1| - 0.0057 16.0 0.1 0.012 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|344212896|ref|YP_004797216.1| - 0.023 13.9 0.0 0.047 13.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 MGS PF02142.17 gi|344212898|ref|YP_004797218.1| - 2.3e-15 56.3 0.0 2.8e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain QueC PF06508.8 gi|344212899|ref|YP_004797219.1| - 1.2e-67 227.2 0.0 1.4e-67 227.0 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|344212899|ref|YP_004797219.1| - 0.00036 20.0 0.0 0.00085 18.8 0.0 1.6 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|344212899|ref|YP_004797219.1| - 0.0031 17.0 0.1 0.0043 16.5 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|344212899|ref|YP_004797219.1| - 0.0053 15.3 0.0 0.0069 14.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|344212899|ref|YP_004797219.1| - 0.11 11.3 0.0 0.19 10.6 0.0 1.5 1 1 0 1 1 1 0 NAD synthase Radical_SAM PF04055.16 gi|344212900|ref|YP_004797220.1| - 1e-26 94.0 3.0 1.8e-26 93.2 2.1 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|344212900|ref|YP_004797220.1| - 3.3e-17 62.5 0.0 7.1e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|344212900|ref|YP_004797220.1| - 5.6e-10 39.4 0.0 1.1e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|344212900|ref|YP_004797220.1| - 0.0019 17.9 0.5 0.0084 15.8 0.4 1.9 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PTPS PF01242.14 gi|344212901|ref|YP_004797221.1| - 2.2e-24 85.5 0.0 2.6e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Halo_GVPC PF05465.8 gi|344212903|ref|YP_004797223.1| - 2.8 7.9 10.6 1.2 9.0 1.9 3.2 2 1 0 2 2 2 0 Halobacterial gas vesicle protein C (GVPC) repeat Peptidase_M28 PF04389.12 gi|344212904|ref|YP_004797224.1| - 9.3e-33 113.4 0.5 1.4e-32 112.8 0.3 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|344212904|ref|YP_004797224.1| - 8.4e-12 44.6 0.0 1.7e-11 43.6 0.0 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|344212904|ref|YP_004797224.1| - 9.3e-07 28.5 0.4 1.6e-06 27.7 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|344212904|ref|YP_004797224.1| - 5.5e-06 25.3 0.4 1.2e-05 24.3 0.2 1.5 1 1 0 1 1 1 1 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|344212904|ref|YP_004797224.1| - 0.036 13.3 0.0 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 Nicastrin DUF723 PF05265.8 gi|344212904|ref|YP_004797224.1| - 0.15 11.8 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF723) DUF2973 PF11189.3 gi|344212905|ref|YP_004797225.1| - 0.1 12.4 1.3 0.2 11.4 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) FtsX PF02687.16 gi|344212905|ref|YP_004797225.1| - 0.21 11.3 10.0 0.056 13.2 4.6 1.7 1 1 1 2 2 2 0 FtsX-like permease family ABC2_membrane_3 PF12698.2 gi|344212905|ref|YP_004797225.1| - 0.3 10.0 4.4 0.33 9.9 3.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3464 PF11947.3 gi|344212905|ref|YP_004797225.1| - 0.73 9.2 4.1 0.57 9.6 1.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3464) Tmemb_9 PF05434.6 gi|344212906|ref|YP_004797226.1| - 0.18 11.5 0.4 0.25 11.0 0.3 1.2 1 0 0 1 1 1 0 TMEM9 Fer2 PF00111.22 gi|344212907|ref|YP_004797227.1| - 7.6e-19 67.2 0.2 9.8e-19 66.8 0.1 1.1 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|344212907|ref|YP_004797227.1| - 0.011 15.5 0.1 0.02 14.6 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.6 gi|344212908|ref|YP_004797228.1| - 4.2e-195 648.6 0.5 4.9e-195 648.4 0.3 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.4 gi|344212908|ref|YP_004797228.1| - 0.0014 17.7 0.0 0.031 13.3 0.0 2.3 2 1 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Beta_propel PF09826.4 gi|344212908|ref|YP_004797228.1| - 0.17 10.2 0.0 0.28 9.4 0.0 1.2 1 0 0 1 1 1 0 Beta propeller domain Epimerase PF01370.16 gi|344212909|ref|YP_004797229.1| - 4.2e-24 85.2 0.0 8.2e-24 84.3 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|344212909|ref|YP_004797229.1| - 2.1e-09 37.6 0.1 3.6e-09 36.8 0.1 1.5 1 1 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|344212909|ref|YP_004797229.1| - 1.1e-08 34.1 0.0 1.6e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|344212909|ref|YP_004797229.1| - 2.2e-07 30.0 0.0 3.6e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain KR PF08659.5 gi|344212909|ref|YP_004797229.1| - 0.0041 16.8 1.3 0.044 13.4 0.2 2.2 1 1 0 2 2 2 1 KR domain adh_short PF00106.20 gi|344212909|ref|YP_004797229.1| - 0.0045 16.9 1.7 0.04 13.8 1.2 2.4 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|344212909|ref|YP_004797229.1| - 0.011 14.6 0.0 0.16 10.8 0.0 2.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein NmrA PF05368.8 gi|344212909|ref|YP_004797229.1| - 0.012 14.9 0.1 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family NAD_binding_4 PF07993.7 gi|344212909|ref|YP_004797229.1| - 0.052 12.4 0.0 5 5.9 0.0 2.2 1 1 1 2 2 2 0 Male sterility protein NAD_binding_10 PF13460.1 gi|344212910|ref|YP_004797230.1| - 9.5e-25 87.6 0.0 2.1e-24 86.5 0.0 1.6 2 0 0 2 2 2 1 NADH(P)-binding NmrA PF05368.8 gi|344212910|ref|YP_004797230.1| - 7.6e-12 44.9 0.0 1e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|344212910|ref|YP_004797230.1| - 2.6e-11 43.3 0.0 1.3e-10 41.1 0.0 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344212910|ref|YP_004797230.1| - 1.3e-06 27.3 0.0 2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|344212910|ref|YP_004797230.1| - 9.4e-06 24.7 0.0 0.0003 19.7 0.0 2.2 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|344212910|ref|YP_004797230.1| - 0.00099 19.0 0.1 0.0028 17.5 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|344212910|ref|YP_004797230.1| - 0.0048 17.1 0.2 0.012 15.9 0.1 1.8 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_4 PF07993.7 gi|344212910|ref|YP_004797230.1| - 0.0052 15.7 0.0 0.028 13.3 0.0 2.2 3 0 0 3 3 3 1 Male sterility protein DapB_N PF01113.15 gi|344212910|ref|YP_004797230.1| - 0.0053 16.6 0.0 0.009 15.9 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Glyco_trans_4_4 PF13579.1 gi|344212910|ref|YP_004797230.1| - 0.026 14.6 1.1 0.48 10.5 0.0 2.6 2 1 1 3 3 3 0 Glycosyl transferase 4-like domain KR PF08659.5 gi|344212910|ref|YP_004797230.1| - 0.05 13.2 0.0 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 KR domain F420_oxidored PF03807.12 gi|344212910|ref|YP_004797230.1| - 0.089 13.2 0.1 0.26 11.7 0.0 1.8 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|344212910|ref|YP_004797230.1| - 0.093 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.14 gi|344212910|ref|YP_004797230.1| - 0.14 11.3 0.0 0.2 10.7 0.0 1.4 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Fer2 PF00111.22 gi|344212911|ref|YP_004797231.1| - 3.2e-12 45.9 0.3 7.5e-12 44.8 0.2 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF1628 PF07790.6 gi|344212912|ref|YP_004797232.1| - 6.7e-12 46.0 2.4 1.2e-11 45.2 1.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1700 PF08006.6 gi|344212912|ref|YP_004797232.1| - 0.031 13.5 0.4 0.038 13.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF4349 PF14257.1 gi|344212912|ref|YP_004797232.1| - 0.95 8.6 6.0 0.28 10.3 1.9 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) NAD_binding_2 PF03446.10 gi|344212913|ref|YP_004797233.1| - 2e-38 131.7 0.1 2.7e-38 131.3 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|344212913|ref|YP_004797233.1| - 1.3e-23 83.6 0.0 1.8e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|344212913|ref|YP_004797233.1| - 2.5e-06 27.8 0.1 3.8e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|344212913|ref|YP_004797233.1| - 1.3e-05 25.1 0.1 2.7e-05 24.1 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|344212913|ref|YP_004797233.1| - 1.9e-05 24.3 0.1 2.8e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|344212913|ref|YP_004797233.1| - 0.00032 19.8 0.0 0.00045 19.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|344212913|ref|YP_004797233.1| - 0.00089 18.6 0.0 0.0023 17.3 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_11 PF14833.1 gi|344212913|ref|YP_004797233.1| - 0.0065 16.5 0.0 0.03 14.3 0.0 2.0 1 1 1 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DapB_N PF01113.15 gi|344212913|ref|YP_004797233.1| - 0.021 14.7 0.9 0.044 13.7 0.6 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.19 gi|344212913|ref|YP_004797233.1| - 0.063 13.2 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DUF348 PF03990.9 gi|344212913|ref|YP_004797233.1| - 0.37 10.3 2.4 32 4.1 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF348) Peptidase_M29 PF02073.10 gi|344212914|ref|YP_004797234.1| - 1.2e-108 363.4 0.1 1.4e-108 363.2 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) T2SF PF00482.18 gi|344212915|ref|YP_004797235.1| - 3.1e-16 59.4 2.0 5.4e-11 42.4 0.2 4.0 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|344212915|ref|YP_004797235.1| - 0.0048 15.6 0.0 0.0084 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|344212916|ref|YP_004797236.1| - 3.3e-43 147.5 0.0 5.6e-43 146.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|344212916|ref|YP_004797236.1| - 0.001 18.5 0.2 0.0045 16.4 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|344212916|ref|YP_004797236.1| - 0.0025 18.0 0.0 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|344212916|ref|YP_004797236.1| - 0.0053 16.8 0.0 0.026 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|344212916|ref|YP_004797236.1| - 0.0082 16.1 0.0 0.097 12.6 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|344212916|ref|YP_004797236.1| - 0.052 13.8 1.3 0.089 13.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|344212916|ref|YP_004797236.1| - 0.057 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase KaiC PF06745.8 gi|344212917|ref|YP_004797237.1| - 1.4e-16 60.3 0.1 2.7e-16 59.3 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|344212917|ref|YP_004797237.1| - 4.1e-09 36.1 0.0 5.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|344212917|ref|YP_004797237.1| - 0.00015 21.4 0.0 0.00032 20.3 0.0 1.7 1 1 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|344212917|ref|YP_004797237.1| - 0.0015 18.2 0.1 0.014 15.0 0.0 2.1 1 1 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|344212917|ref|YP_004797237.1| - 0.0019 18.3 0.0 0.0033 17.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344212917|ref|YP_004797237.1| - 0.0035 17.3 0.0 0.006 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|344212917|ref|YP_004797237.1| - 0.0095 16.2 0.1 0.021 15.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain Resolvase PF00239.16 gi|344212917|ref|YP_004797237.1| - 0.026 14.3 0.1 0.039 13.8 0.1 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain PRK PF00485.13 gi|344212917|ref|YP_004797237.1| - 0.026 14.0 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family IstB_IS21 PF01695.12 gi|344212917|ref|YP_004797237.1| - 0.048 13.0 0.0 0.092 12.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FF PF01846.14 gi|344212917|ref|YP_004797237.1| - 0.058 13.3 0.3 0.31 11.0 0.1 2.1 1 1 1 2 2 2 0 FF domain Arch_flagellin PF01917.11 gi|344212918|ref|YP_004797238.1| - 1.9e-15 56.9 5.4 2.6e-14 53.2 3.7 2.0 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|344212918|ref|YP_004797238.1| - 3.6e-07 30.1 0.3 5.2e-07 29.6 0.2 1.2 1 0 0 1 1 1 1 CARDB DUF11 PF01345.13 gi|344212918|ref|YP_004797238.1| - 0.19 11.8 1.3 0.21 11.6 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF11 Arch_flagellin PF01917.11 gi|344212919|ref|YP_004797239.1| - 1.1e-10 41.4 3.0 1.1e-09 38.1 2.1 1.9 1 1 0 1 1 1 1 Archaebacterial flagellin RskA PF10099.4 gi|344212919|ref|YP_004797239.1| - 0.036 13.8 0.4 0.051 13.2 0.1 1.4 2 0 0 2 2 2 0 Anti-sigma-K factor rskA DUF4352 PF11611.3 gi|344212919|ref|YP_004797239.1| - 0.18 11.9 1.7 0.38 10.9 0.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4352) Arch_fla_DE PF04659.8 gi|344212920|ref|YP_004797240.1| - 1.7e-29 101.5 0.1 4e-29 100.3 0.0 1.7 2 0 0 2 2 2 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|344212920|ref|YP_004797240.1| - 2.3e-22 78.6 1.9 2.3e-22 78.6 1.3 1.6 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Trypan_PARP PF05887.6 gi|344212920|ref|YP_004797240.1| - 0.0058 16.4 33.9 0.0058 16.4 23.5 4.3 3 1 1 4 4 4 1 Procyclic acidic repetitive protein (PARP) CENP-F_leu_zip PF10473.4 gi|344212920|ref|YP_004797240.1| - 0.028 14.2 0.6 0.048 13.5 0.4 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|344212920|ref|YP_004797240.1| - 0.076 10.7 0.4 0.11 10.1 0.3 1.1 1 0 0 1 1 1 0 Myosin tail Dynamitin PF04912.9 gi|344212920|ref|YP_004797240.1| - 0.081 11.7 0.3 0.13 11.0 0.2 1.2 1 0 0 1 1 1 0 Dynamitin TBPIP PF07106.8 gi|344212920|ref|YP_004797240.1| - 0.18 11.3 0.3 0.29 10.6 0.2 1.2 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FH2 PF02181.18 gi|344212920|ref|YP_004797240.1| - 0.25 10.1 0.0 0.38 9.6 0.0 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain PLRV_ORF5 PF01690.12 gi|344212920|ref|YP_004797240.1| - 6 5.8 15.9 12 4.9 11.0 1.4 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein CheD PF03975.8 gi|344212921|ref|YP_004797241.1| - 4.2e-30 103.8 0.0 5.5e-30 103.4 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|344212922|ref|YP_004797242.1| - 4.3e-22 77.5 0.0 1.7e-10 40.4 0.0 2.4 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|344212922|ref|YP_004797242.1| - 2.6e-18 65.6 0.6 4.9e-10 39.1 0.1 2.5 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX DUF3334 PF11813.3 gi|344212922|ref|YP_004797242.1| - 0.13 11.7 2.1 0.4 10.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3334) Response_reg PF00072.19 gi|344212923|ref|YP_004797243.1| - 1.4e-26 92.6 0.3 1.5e-26 92.5 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF3372 PF11852.3 gi|344212923|ref|YP_004797243.1| - 0.029 13.5 0.1 0.035 13.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) IMPDH PF00478.20 gi|344212923|ref|YP_004797243.1| - 0.041 12.7 0.3 0.053 12.4 0.2 1.0 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain QRPTase_C PF01729.14 gi|344212923|ref|YP_004797243.1| - 0.09 12.3 2.6 0.64 9.5 1.5 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Arch_flagellin PF01917.11 gi|344212927|ref|YP_004797247.1| - 2.1e-36 125.3 7.7 2.4e-36 125.1 5.3 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF948 PF06103.6 gi|344212927|ref|YP_004797247.1| - 0.74 9.7 3.9 1.9 8.4 2.7 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Arch_flagellin PF01917.11 gi|344212928|ref|YP_004797248.1| - 1e-37 129.6 7.5 1.2e-37 129.4 5.2 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2499 PF10693.4 gi|344212929|ref|YP_004797249.1| - 0.072 13.1 1.3 0.1 12.6 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2499) DUF2109 PF09882.4 gi|344212929|ref|YP_004797249.1| - 0.14 12.1 1.6 0.23 11.4 1.1 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2109) DUF983 PF06170.7 gi|344212929|ref|YP_004797249.1| - 0.39 10.8 2.1 0.69 10.0 1.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF983) CopD PF05425.8 gi|344212929|ref|YP_004797249.1| - 1.7 8.9 8.1 2.1 8.6 5.6 1.3 1 1 0 1 1 1 0 Copper resistance protein D Rhomboid PF01694.17 gi|344212929|ref|YP_004797249.1| - 1.7 8.6 8.0 2.1 8.3 5.5 1.1 1 0 0 1 1 1 0 Rhomboid family HTH_20 PF12840.2 gi|344212930|ref|YP_004797250.1| - 1.9e-10 40.3 0.0 3.6e-10 39.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344212930|ref|YP_004797250.1| - 2e-05 23.8 0.0 3.6e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344212930|ref|YP_004797250.1| - 3e-05 23.5 0.0 5.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|344212930|ref|YP_004797250.1| - 4.9e-05 22.8 0.0 8.9e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|344212930|ref|YP_004797250.1| - 0.0012 18.4 0.1 0.0019 17.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|344212930|ref|YP_004797250.1| - 0.0027 17.7 0.0 0.0048 16.9 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain HTH_AsnC-type PF13404.1 gi|344212930|ref|YP_004797250.1| - 0.0032 16.9 0.0 0.0084 15.6 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|344212930|ref|YP_004797250.1| - 0.0047 16.5 0.0 0.0082 15.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB RDV-p3 PF09231.5 gi|344212930|ref|YP_004797250.1| - 0.04 11.3 0.1 0.042 11.2 0.1 1.0 1 0 0 1 1 1 0 Rice dwarf virus p3 HTH_27 PF13463.1 gi|344212930|ref|YP_004797250.1| - 0.051 13.9 0.1 0.069 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|344212930|ref|YP_004797250.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Mga PF05043.8 gi|344212930|ref|YP_004797250.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain KaiC PF06745.8 gi|344212931|ref|YP_004797251.1| - 5.8e-50 169.5 0.0 6.6e-50 169.3 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|344212931|ref|YP_004797251.1| - 1.9e-11 43.7 0.0 3.7e-11 42.8 0.0 1.4 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|344212931|ref|YP_004797251.1| - 0.0033 16.4 0.0 0.0038 16.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|344212931|ref|YP_004797251.1| - 0.0037 16.8 0.1 0.01 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|344212931|ref|YP_004797251.1| - 0.0044 16.9 0.3 0.011 15.6 0.2 1.9 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|344212931|ref|YP_004797251.1| - 0.01 14.7 0.1 0.016 14.1 0.1 1.3 1 0 0 1 1 1 0 Rad51 DnaB_C PF03796.10 gi|344212931|ref|YP_004797251.1| - 0.019 13.8 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|344212931|ref|YP_004797251.1| - 0.038 13.4 0.0 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|344212931|ref|YP_004797251.1| - 0.039 14.1 0.0 0.054 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|344212931|ref|YP_004797251.1| - 0.5 11.1 3.4 4.6 8.0 2.4 2.4 1 1 0 1 1 1 0 AAA domain CheW PF01584.14 gi|344212932|ref|YP_004797252.1| - 6.4e-28 96.9 0.7 7.7e-28 96.6 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.12 gi|344212933|ref|YP_004797253.1| - 6.8e-61 204.8 0.2 1.1e-60 204.1 0.1 1.3 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|344212933|ref|YP_004797253.1| - 5.2e-21 74.7 0.4 1.8e-20 73.0 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344212934|ref|YP_004797254.1| - 1.5e-25 89.0 0.1 3.4e-25 87.9 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|344212934|ref|YP_004797254.1| - 8e-20 70.7 0.5 2e-19 69.3 0.4 1.7 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.18 gi|344212934|ref|YP_004797254.1| - 1.3e-19 69.9 0.6 6.2e-19 67.7 0.4 2.3 1 1 0 1 1 1 1 Hpt domain H-kinase_dim PF02895.9 gi|344212934|ref|YP_004797254.1| - 4.4e-09 36.5 3.4 4.4e-09 36.5 2.4 2.5 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.6 gi|344212934|ref|YP_004797254.1| - 1.8e-08 34.0 0.0 4.8e-08 32.7 0.0 1.8 1 0 0 1 1 1 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|344212934|ref|YP_004797254.1| - 0.0068 16.1 0.1 0.0068 16.1 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|344212934|ref|YP_004797254.1| - 0.013 15.1 0.0 0.069 12.8 0.0 2.2 1 1 0 1 1 1 0 GHKL domain CheR PF01739.13 gi|344212935|ref|YP_004797255.1| - 1.1e-49 168.3 0.0 1.4e-49 168.0 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|344212935|ref|YP_004797255.1| - 6.8e-08 31.7 0.6 6.8e-08 31.7 0.4 2.7 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|344212935|ref|YP_004797255.1| - 2.9e-05 24.4 0.0 0.0012 19.3 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344212935|ref|YP_004797255.1| - 0.0001 22.8 0.0 0.00017 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344212935|ref|YP_004797255.1| - 0.0091 15.5 0.0 0.046 13.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344212935|ref|YP_004797255.1| - 0.017 15.4 0.0 0.039 14.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212935|ref|YP_004797255.1| - 0.021 14.5 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubiquitin_3 PF14836.1 gi|344212935|ref|YP_004797255.1| - 0.036 13.7 0.0 0.12 12.0 0.0 1.9 2 0 0 2 2 2 0 Ubiquitin-like domain Methyltransf_11 PF08241.7 gi|344212935|ref|YP_004797255.1| - 0.041 14.3 0.1 0.44 11.0 0.1 2.3 1 1 0 1 1 1 0 Methyltransferase domain HEAT_2 PF13646.1 gi|344212936|ref|YP_004797256.1| - 6.2e-92 302.0 46.8 1.6e-19 69.9 1.4 6.1 1 1 7 8 8 8 8 HEAT repeats HEAT PF02985.17 gi|344212936|ref|YP_004797256.1| - 9.9e-33 109.2 4.9 0.0018 18.1 0.0 10.9 11 0 0 11 11 11 7 HEAT repeat HEAT_EZ PF13513.1 gi|344212936|ref|YP_004797256.1| - 7.1e-27 93.1 24.2 1.3e-06 28.6 0.2 9.5 7 2 2 9 9 9 7 HEAT-like repeat HEAT_PBS PF03130.11 gi|344212936|ref|YP_004797256.1| - 1.1e-22 78.0 12.4 7.9e-05 22.7 0.3 10.1 10 0 0 10 10 10 4 PBS lyase HEAT-like repeat Arm PF00514.18 gi|344212936|ref|YP_004797256.1| - 6.5e-16 57.4 0.3 0.053 13.3 0.0 9.1 10 0 0 10 10 10 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|344212936|ref|YP_004797256.1| - 1.1e-10 40.5 1.2 0.0007 18.0 0.2 4.7 2 1 3 5 5 5 2 Adaptin N terminal region Cnd1 PF12717.2 gi|344212936|ref|YP_004797256.1| - 1.7e-08 34.4 2.2 0.11 12.3 0.0 5.6 2 1 2 6 6 6 2 non-SMC mitotic condensation complex subunit 1 Vac14_Fab1_bd PF12755.2 gi|344212936|ref|YP_004797256.1| - 0.00014 22.1 0.3 3.4 8.1 0.0 5.1 2 1 2 5 5 5 1 Vacuolar 14 Fab1-binding region Cohesin_HEAT PF12765.2 gi|344212936|ref|YP_004797256.1| - 0.004 17.0 7.7 0.88 9.6 0.1 4.4 4 0 0 4 4 4 2 HEAT repeat associated with sister chromatid cohesion Vitellogenin_N PF01347.17 gi|344212936|ref|YP_004797256.1| - 0.0087 14.3 0.0 0.95 7.6 0.0 2.5 2 0 0 2 2 2 1 Lipoprotein amino terminal region Imm16 PF15565.1 gi|344212936|ref|YP_004797256.1| - 0.016 15.0 5.6 0.89 9.4 0.1 3.5 2 1 1 3 3 3 0 Immunity protein 16 ERAP1_C PF11838.3 gi|344212936|ref|YP_004797256.1| - 0.039 13.1 7.7 1.5 7.9 0.4 3.5 1 1 1 3 3 3 0 ERAP1-like C-terminal domain GlutR_dimer PF00745.15 gi|344212936|ref|YP_004797256.1| - 0.097 12.6 2.1 18 5.3 0.2 3.7 2 1 1 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain Catalase-rel PF06628.7 gi|344212936|ref|YP_004797256.1| - 0.12 12.2 0.7 7.6 6.4 0.0 3.5 3 1 0 3 3 3 0 Catalase-related immune-responsive Aconitase_B_N PF11791.3 gi|344212936|ref|YP_004797256.1| - 0.26 11.0 3.8 11 5.7 0.1 4.5 4 2 2 7 7 7 0 Aconitate B N-terminal domain CobD_Cbib PF03186.8 gi|344212936|ref|YP_004797256.1| - 0.9 8.5 3.8 11 4.9 0.2 2.2 2 0 0 2 2 2 0 CobD/Cbib protein RasGEF_N_2 PF14663.1 gi|344212936|ref|YP_004797256.1| - 1.2 9.1 3.3 41 4.1 0.1 4.2 5 1 1 6 6 6 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain CheF-arch PF04283.7 gi|344212937|ref|YP_004797257.1| - 3.2e-65 219.4 0.4 4.3e-65 219.0 0.2 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_2 PF03703.9 gi|344212937|ref|YP_004797257.1| - 0.035 14.1 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial PH domain bPH_3 PF14470.1 gi|344212937|ref|YP_004797257.1| - 0.1 12.8 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain Ribosomal_S6e PF01092.14 gi|344212938|ref|YP_004797258.1| - 1.4e-48 163.6 1.3 1.7e-48 163.4 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e KH_4 PF13083.1 gi|344212938|ref|YP_004797258.1| - 0.05 13.2 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 KH domain CheF-arch PF04283.7 gi|344212940|ref|YP_004797260.1| - 1.3e-63 214.2 0.1 1.6e-63 213.9 0.1 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea TrmB PF01978.14 gi|344212940|ref|YP_004797260.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344212940|ref|YP_004797260.1| - 0.054 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF3553 PF12073.3 gi|344212940|ref|YP_004797260.1| - 0.14 11.4 0.0 0.68 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) DUF1053 PF06327.9 gi|344212942|ref|YP_004797262.1| - 0.043 14.1 0.0 0.065 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1053) DUF308 PF03729.8 gi|344212943|ref|YP_004797263.1| - 0.48 10.4 7.9 0.052 13.5 1.6 2.0 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF2061 PF09834.4 gi|344212943|ref|YP_004797263.1| - 2.7 8.2 6.0 0.53 10.5 0.7 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2061) DHHA1 PF02272.14 gi|344212944|ref|YP_004797264.1| - 0.0002 20.9 0.2 0.00056 19.5 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|344212944|ref|YP_004797264.1| - 0.0027 17.3 0.0 0.0082 15.8 0.0 1.8 2 0 0 2 2 2 1 DHH family DUF2795 PF11387.3 gi|344212944|ref|YP_004797264.1| - 0.039 13.8 2.1 11 5.9 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2795) DUF3364 PF11844.3 gi|344212944|ref|YP_004797264.1| - 0.066 13.2 1.5 0.35 10.9 0.3 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3364) Usp PF00582.21 gi|344212945|ref|YP_004797265.1| - 4.9e-36 123.9 2.9 5.6e-36 123.8 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|344212945|ref|YP_004797265.1| - 0.0077 16.3 0.4 0.011 15.8 0.3 1.3 1 1 0 1 1 1 1 von Willebrand factor type A domain ETF PF01012.16 gi|344212945|ref|YP_004797265.1| - 0.016 14.9 5.5 0.046 13.4 3.4 1.9 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DNA_photolyase PF00875.13 gi|344212945|ref|YP_004797265.1| - 0.049 13.3 0.0 0.11 12.2 0.0 1.5 1 1 0 1 1 1 0 DNA photolyase DUF1778 PF08681.6 gi|344212945|ref|YP_004797265.1| - 0.052 13.3 0.4 0.13 12.1 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1778) Usp PF00582.21 gi|344212946|ref|YP_004797266.1| - 2.3e-17 63.4 2.8 5.7e-17 62.2 1.9 1.5 1 1 0 1 1 1 1 Universal stress protein family Acetyltransf_1 PF00583.19 gi|344212947|ref|YP_004797267.1| - 6.7e-18 64.5 0.0 9.5e-18 64.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|344212947|ref|YP_004797267.1| - 3.5e-11 43.2 0.0 4.1e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344212947|ref|YP_004797267.1| - 7.4e-10 39.1 0.0 9.4e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344212947|ref|YP_004797267.1| - 1.4e-07 31.6 0.0 2.1e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344212947|ref|YP_004797267.1| - 6.9e-07 28.9 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|344212947|ref|YP_004797267.1| - 4.9e-06 26.5 0.0 6.2e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344212947|ref|YP_004797267.1| - 0.005 16.6 0.0 0.053 13.3 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344212947|ref|YP_004797267.1| - 0.017 15.0 0.1 0.028 14.3 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|344212947|ref|YP_004797267.1| - 0.023 14.6 0.0 0.031 14.2 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|344212947|ref|YP_004797267.1| - 0.035 13.9 0.0 0.053 13.3 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|344212948|ref|YP_004797268.1| - 2.6e-14 53.5 0.0 7e-14 52.2 0.0 1.6 1 1 0 1 1 1 1 Universal stress protein family Plasmid_RAQPRD PF09686.5 gi|344212948|ref|YP_004797268.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Plasmid protein of unknown function (Plasmid_RAQPRD) DUF4203 PF13886.1 gi|344212950|ref|YP_004797270.1| - 0.15 11.4 16.2 0.57 9.5 11.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4203) 2OG-FeII_Oxy_2 PF13532.1 gi|344212951|ref|YP_004797271.1| - 0.078 12.7 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily HAD PF12710.2 gi|344212951|ref|YP_004797271.1| - 0.082 13.0 0.0 0.14 12.3 0.0 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase ABC_tran PF00005.22 gi|344212952|ref|YP_004797272.1| - 1.6e-57 193.6 0.0 6.2e-32 110.7 0.0 3.4 2 1 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|344212952|ref|YP_004797272.1| - 2.2e-39 133.6 3.1 1.1e-20 73.7 0.2 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|344212952|ref|YP_004797272.1| - 1.2e-16 61.5 0.0 8e-08 32.5 0.0 3.9 3 1 1 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|344212952|ref|YP_004797272.1| - 3.7e-06 26.3 1.0 0.057 12.9 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344212952|ref|YP_004797272.1| - 4e-06 26.9 0.0 0.028 14.4 0.0 2.9 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|344212952|ref|YP_004797272.1| - 5.9e-05 22.3 0.1 0.31 10.2 0.0 3.5 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|344212952|ref|YP_004797272.1| - 0.00016 21.7 0.9 0.25 11.4 0.0 3.7 3 1 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|344212952|ref|YP_004797272.1| - 0.00057 19.3 0.8 2.1 7.7 0.0 3.8 5 0 0 5 5 4 2 AAA domain AIG1 PF04548.11 gi|344212952|ref|YP_004797272.1| - 0.00066 18.8 2.3 0.32 10.0 0.1 3.3 3 0 0 3 3 3 1 AIG1 family ATP-synt_ab PF00006.20 gi|344212952|ref|YP_004797272.1| - 0.0024 17.4 0.0 1.6 8.1 0.0 2.5 2 1 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.9 gi|344212952|ref|YP_004797272.1| - 0.0097 15.6 0.4 0.64 9.7 0.0 2.8 3 0 0 3 3 2 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|344212952|ref|YP_004797272.1| - 0.012 15.1 0.1 8.8 5.6 0.0 3.3 4 0 0 4 4 4 0 AAA-like domain DUF258 PF03193.11 gi|344212952|ref|YP_004797272.1| - 0.015 14.4 1.2 3 7.0 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|344212952|ref|YP_004797272.1| - 0.016 14.2 0.2 4.2 6.3 0.0 2.7 4 0 0 4 4 4 0 AAA ATPase domain AAA PF00004.24 gi|344212952|ref|YP_004797272.1| - 0.021 15.0 0.0 1.1 9.4 0.0 3.4 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) Hpr_kinase_C PF07475.7 gi|344212952|ref|YP_004797272.1| - 0.031 13.5 1.6 1.2 8.4 0.1 2.4 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain PRK PF00485.13 gi|344212952|ref|YP_004797272.1| - 0.041 13.4 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|344212952|ref|YP_004797272.1| - 0.042 14.1 0.2 2.2 8.5 0.0 2.9 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|344212952|ref|YP_004797272.1| - 0.045 13.2 0.2 13 5.1 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|344212952|ref|YP_004797272.1| - 0.083 11.7 1.1 6.1 5.6 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.9 gi|344212952|ref|YP_004797272.1| - 0.091 12.4 0.1 5.1 6.7 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|344212952|ref|YP_004797272.1| - 0.14 12.3 0.2 7 6.8 0.0 2.4 2 0 0 2 2 2 0 RNA helicase KaiC PF06745.8 gi|344212952|ref|YP_004797272.1| - 0.22 10.6 0.7 16 4.4 0.0 2.4 2 0 0 2 2 2 0 KaiC DUF87 PF01935.12 gi|344212952|ref|YP_004797272.1| - 0.25 11.1 1.7 5.2 6.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 SbcCD_C PF13558.1 gi|344212952|ref|YP_004797272.1| - 0.41 10.6 4.4 22 5.0 0.0 4.2 4 2 0 4 4 4 0 Putative exonuclease SbcCD, C subunit SBP_bac_5 PF00496.17 gi|344212953|ref|YP_004797273.1| - 5.2e-77 259.1 4.3 7.4e-77 258.6 3.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|344212953|ref|YP_004797273.1| - 0.00088 19.0 5.2 0.0024 17.7 3.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|344212954|ref|YP_004797274.1| - 1.5e-38 132.1 12.8 1.5e-38 132.1 8.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344212955|ref|YP_004797275.1| - 1.8e-34 118.9 7.7 1.8e-34 118.9 5.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|344212955|ref|YP_004797275.1| - 0.0012 18.1 0.0 0.0012 18.1 0.0 2.3 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF2613 PF11021.3 gi|344212956|ref|YP_004797276.1| - 0.24 11.1 3.2 0.65 9.7 2.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2613) Amidohydro_4 PF13147.1 gi|344212957|ref|YP_004797277.1| - 7.9e-32 111.3 13.1 1e-31 111.0 9.1 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|344212957|ref|YP_004797277.1| - 9.1e-21 74.8 0.0 1.8e-20 73.8 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|344212957|ref|YP_004797277.1| - 3.8e-13 49.0 0.1 3.8e-13 49.0 0.1 2.2 3 0 0 3 3 3 1 Amidohydrolase TatD_DNase PF01026.16 gi|344212957|ref|YP_004797277.1| - 2.9e-05 23.4 0.4 0.00033 19.9 0.3 2.6 1 1 0 1 1 1 1 TatD related DNase DHOase PF12890.2 gi|344212957|ref|YP_004797277.1| - 0.00075 19.1 0.0 0.0026 17.4 0.0 1.8 1 1 0 1 1 1 1 Dihydro-orotase-like Amidohydro_3 PF07969.6 gi|344212957|ref|YP_004797277.1| - 0.01 15.0 17.8 4.1 6.4 9.9 3.2 2 1 0 2 2 2 0 Amidohydrolase family Usp PF00582.21 gi|344212957|ref|YP_004797277.1| - 0.042 14.0 1.8 0.098 12.8 0.1 2.3 1 1 1 2 2 2 0 Universal stress protein family BPL_LplA_LipB PF03099.14 gi|344212958|ref|YP_004797278.1| - 1.2e-05 25.2 0.0 1.8e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF4129 PF13559.1 gi|344212958|ref|YP_004797278.1| - 0.16 11.9 6.9 0.48 10.4 4.8 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) Isochorismatase PF00857.15 gi|344212960|ref|YP_004797280.1| - 1e-49 168.8 0.0 1.1e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_MA_2 PF13485.1 gi|344212961|ref|YP_004797281.1| - 0.0003 20.8 0.0 0.0003 20.8 0.0 2.3 2 2 1 3 3 3 1 Peptidase MA superfamily DUF955 PF06114.8 gi|344212961|ref|YP_004797281.1| - 0.0054 16.4 0.0 0.0091 15.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF955) SprT-like PF10263.4 gi|344212961|ref|YP_004797281.1| - 0.021 14.4 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 SprT-like family DUF2800 PF10926.3 gi|344212961|ref|YP_004797281.1| - 0.068 12.2 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2800) DUF4157 PF13699.1 gi|344212961|ref|YP_004797281.1| - 0.079 13.1 0.1 0.18 11.9 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.4 gi|344212961|ref|YP_004797281.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_MA_2 PF13485.1 gi|344212962|ref|YP_004797282.1| - 2.2e-05 24.5 0.0 6.6e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 Peptidase MA superfamily DUF955 PF06114.8 gi|344212962|ref|YP_004797282.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_M76 PF09768.4 gi|344212962|ref|YP_004797282.1| - 0.049 13.1 0.0 0.08 12.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family DSS1_SEM1 PF05160.8 gi|344212962|ref|YP_004797282.1| - 0.084 12.6 1.4 0.23 11.2 0.0 2.3 2 0 0 2 2 2 0 DSS1/SEM1 family QRPTase_C PF01729.14 gi|344212963|ref|YP_004797283.1| - 1.6e-16 60.2 0.0 2.3e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|344212963|ref|YP_004797283.1| - 1.8e-06 27.6 0.0 4.7e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain DUF1949 PF09186.6 gi|344212964|ref|YP_004797284.1| - 0.18 11.4 0.9 5.7 6.6 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1949) Cys_rich_CPCC PF14206.1 gi|344212965|ref|YP_004797285.1| - 1.3e-29 101.5 0.9 1.5e-29 101.3 0.6 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC RecR PF02132.10 gi|344212965|ref|YP_004797285.1| - 0.16 11.4 1.5 5.2 6.5 0.1 2.7 3 1 0 3 3 3 0 RecR protein Zip PF02535.17 gi|344212966|ref|YP_004797286.1| - 2.7e-21 75.9 9.2 2.9e-16 59.3 3.1 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|344212966|ref|YP_004797286.1| - 0.051 12.5 0.0 1.6 7.7 0.0 2.3 1 1 1 2 2 2 0 E1-E2 ATPase GtrA PF04138.9 gi|344212966|ref|YP_004797286.1| - 0.21 11.5 0.1 0.21 11.5 0.0 2.6 3 1 0 3 3 3 0 GtrA-like protein YhhN PF07947.9 gi|344212966|ref|YP_004797286.1| - 0.26 10.6 5.5 0.2 10.9 0.5 2.5 2 1 0 2 2 2 0 YhhN-like protein Gly-zipper_OmpA PF13436.1 gi|344212966|ref|YP_004797286.1| - 1.1 8.8 3.5 38 3.9 0.0 3.3 3 0 0 3 3 3 0 Glycine-zipper containing OmpA-like membrane domain Peptidase_M50 PF02163.17 gi|344212967|ref|YP_004797287.1| - 3.5e-23 81.5 12.7 2.3e-16 59.3 4.1 2.4 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|344212967|ref|YP_004797287.1| - 1.8e-05 24.2 12.9 1.8e-05 24.2 8.9 2.3 1 1 1 2 2 2 1 Peptidase M50B-like CBS PF00571.23 gi|344212967|ref|YP_004797287.1| - 0.00035 20.2 0.7 0.002 17.8 0.1 2.3 2 0 0 2 2 2 1 CBS domain Peptidase_MA_2 PF13485.1 gi|344212967|ref|YP_004797287.1| - 0.0074 16.3 0.1 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily DUF4129 PF13559.1 gi|344212967|ref|YP_004797287.1| - 0.25 11.3 3.6 3.1 7.8 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4129) Lactamase_B_3 PF13483.1 gi|344212968|ref|YP_004797288.1| - 1.3e-24 86.7 0.0 1.6e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain IF-2B PF01008.12 gi|344212969|ref|YP_004797289.1| - 4.4e-46 157.1 0.3 5.4e-46 156.8 0.2 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|344212969|ref|YP_004797289.1| - 1.6e-10 40.7 0.5 2.9e-10 39.9 0.4 1.4 1 0 0 1 1 1 1 NUDIX domain Aminotran_5 PF00266.14 gi|344212970|ref|YP_004797290.1| - 9.8e-60 202.2 0.0 1.1e-59 202.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|344212970|ref|YP_004797290.1| - 1.4e-06 27.5 0.0 0.00051 19.1 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II DUF4091 PF13320.1 gi|344212970|ref|YP_004797290.1| - 0.03 14.2 0.2 0.082 12.8 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4091) Relaxase PF03432.9 gi|344212971|ref|YP_004797291.1| - 0.048 13.0 0.1 0.07 12.4 0.1 1.3 1 0 0 1 1 1 0 Relaxase/Mobilisation nuclease domain DUF3828 PF12883.2 gi|344212971|ref|YP_004797291.1| - 0.066 13.1 0.1 0.22 11.4 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3828) DUF2318 PF10080.4 gi|344212971|ref|YP_004797291.1| - 0.069 12.9 0.5 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Cor1 PF04803.7 gi|344212971|ref|YP_004797291.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Seryl_tRNA_N PF02403.17 gi|344212972|ref|YP_004797292.1| - 9.6e-06 25.5 61.5 0.00023 21.1 4.6 5.3 2 2 2 4 4 4 3 Seryl-tRNA synthetase N-terminal domain AAA_23 PF13476.1 gi|344212972|ref|YP_004797292.1| - 1.7e-05 25.2 58.4 4.6 7.5 29.3 4.2 1 1 1 2 2 1 0 AAA domain ALIX_LYPXL_bnd PF13949.1 gi|344212972|ref|YP_004797292.1| - 2.4e-05 23.4 22.6 2.4e-05 23.4 15.7 2.7 2 1 0 2 2 2 1 ALIX V-shaped domain binding to HIV AAA_13 PF13166.1 gi|344212972|ref|YP_004797292.1| - 3.4e-05 22.5 50.6 0.02 13.3 16.7 3.2 1 1 2 3 3 3 3 AAA domain TBPIP PF07106.8 gi|344212972|ref|YP_004797292.1| - 7.1e-05 22.4 60.1 0.058 12.9 6.5 4.6 2 2 2 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Atg14 PF10186.4 gi|344212972|ref|YP_004797292.1| - 0.00023 20.2 56.4 0.0013 17.7 10.7 4.2 1 1 2 4 4 4 3 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|344212972|ref|YP_004797292.1| - 0.0005 18.8 65.4 0.057 12.0 11.9 4.6 2 2 3 5 5 5 3 Spc7 kinetochore protein GAS PF13851.1 gi|344212972|ref|YP_004797292.1| - 0.00052 19.2 58.9 0.0039 16.4 15.3 4.2 2 2 2 4 4 4 2 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.2 gi|344212972|ref|YP_004797292.1| - 0.0034 17.2 90.0 0.015 15.1 16.6 5.1 2 2 2 4 4 4 2 Tropomyosin like Phage_GP20 PF06810.6 gi|344212972|ref|YP_004797292.1| - 0.0039 16.6 57.6 0.69 9.3 6.4 5.7 2 2 3 5 5 5 3 Phage minor structural protein GP20 Myosin_tail_1 PF01576.14 gi|344212972|ref|YP_004797292.1| - 0.0043 14.8 73.6 0.059 11.1 21.2 3.2 2 1 0 2 2 2 2 Myosin tail IncA PF04156.9 gi|344212972|ref|YP_004797292.1| - 0.005 16.4 32.9 0.005 16.4 22.8 4.7 2 2 2 4 4 4 2 IncA protein DUF3584 PF12128.3 gi|344212972|ref|YP_004797292.1| - 0.0055 14.1 60.4 0.072 10.4 17.3 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) Reo_sigmaC PF04582.7 gi|344212972|ref|YP_004797292.1| - 0.0057 15.8 18.7 0.84 8.7 3.0 4.2 1 1 2 4 4 4 4 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|344212972|ref|YP_004797292.1| - 0.0057 16.4 34.8 0.0068 16.1 6.4 4.8 3 2 3 6 6 6 3 Laminin Domain II DivIC PF04977.10 gi|344212972|ref|YP_004797292.1| - 0.007 15.8 0.8 0.007 15.8 0.5 8.7 4 2 6 10 10 9 4 Septum formation initiator FlaC_arch PF05377.6 gi|344212972|ref|YP_004797292.1| - 0.012 15.4 1.1 0.012 15.4 0.7 8.3 6 1 3 9 9 8 0 Flagella accessory protein C (FlaC) FliJ PF02050.11 gi|344212972|ref|YP_004797292.1| - 0.014 15.4 3.6 0.014 15.4 2.5 5.3 4 2 2 6 6 4 0 Flagellar FliJ protein NPV_P10 PF05531.7 gi|344212972|ref|YP_004797292.1| - 0.033 14.4 38.2 0.11 12.7 0.6 7.0 3 2 2 6 6 6 0 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.7 gi|344212972|ref|YP_004797292.1| - 0.039 13.7 59.1 0.19 11.4 4.9 5.6 3 2 3 6 6 6 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.5 gi|344212972|ref|YP_004797292.1| - 0.09 12.9 44.2 0.019 15.1 7.0 5.1 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family Baculo_PEP_C PF04513.7 gi|344212972|ref|YP_004797292.1| - 0.12 12.1 23.5 1.8 8.4 0.6 4.9 3 2 2 5 5 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Filament PF00038.16 gi|344212972|ref|YP_004797292.1| - 0.14 11.5 64.7 0.022 14.2 17.3 4.4 2 2 1 3 3 3 0 Intermediate filament protein AAA_27 PF13514.1 gi|344212972|ref|YP_004797292.1| - 0.15 9.7 64.7 0.11 10.1 9.7 3.5 2 2 2 4 4 4 0 AAA domain CENP-F_leu_zip PF10473.4 gi|344212972|ref|YP_004797292.1| - 0.19 11.5 79.8 0.3 10.9 8.3 5.7 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.7 gi|344212972|ref|YP_004797292.1| - 0.47 10.2 43.4 0.19 11.5 1.0 5.4 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|344212972|ref|YP_004797292.1| - 0.49 10.2 76.0 0.056 13.2 0.6 7.7 4 2 4 8 8 8 0 TATA element modulatory factor 1 DNA binding GLE1 PF07817.8 gi|344212972|ref|YP_004797292.1| - 0.75 8.6 14.6 0.51 9.2 0.6 3.5 3 1 1 4 4 4 0 GLE1-like protein DUF342 PF03961.8 gi|344212972|ref|YP_004797292.1| - 0.91 7.8 49.4 2.2 6.5 7.4 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF342) EzrA PF06160.7 gi|344212972|ref|YP_004797292.1| - 0.95 7.5 52.0 0.69 8.0 13.9 2.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA FlxA PF14282.1 gi|344212972|ref|YP_004797292.1| - 1.1 9.2 50.2 1.2 9.1 4.5 5.0 2 2 3 5 5 5 0 FlxA-like protein WEMBL PF05701.6 gi|344212972|ref|YP_004797292.1| - 1.1 7.6 59.9 0.31 9.4 15.2 2.5 2 1 0 2 2 2 0 Weak chloroplast movement under blue light ATG16 PF08614.6 gi|344212972|ref|YP_004797292.1| - 1.1 9.0 73.4 1 9.1 10.9 5.6 2 2 2 4 4 4 0 Autophagy protein 16 (ATG16) Mnd1 PF03962.10 gi|344212972|ref|YP_004797292.1| - 1.2 8.7 59.5 0.44 10.2 2.8 4.7 2 2 2 4 4 4 0 Mnd1 family Spectrin PF00435.16 gi|344212972|ref|YP_004797292.1| - 1.2 9.4 55.8 3.5 7.9 4.6 6.0 2 2 2 5 5 5 0 Spectrin repeat COG2 PF06148.6 gi|344212972|ref|YP_004797292.1| - 2.4 8.0 43.1 1.3 8.8 3.2 6.0 2 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_21 PF13304.1 gi|344212972|ref|YP_004797292.1| - 4.4 7.1 11.6 0.55 10.1 3.1 2.3 2 0 0 2 2 2 0 AAA domain DUF4201 PF13870.1 gi|344212972|ref|YP_004797292.1| - 5.9 6.2 51.6 1.9 7.8 7.8 4.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) DUF948 PF06103.6 gi|344212972|ref|YP_004797292.1| - 6.6 6.6 21.9 5.8 6.8 0.8 5.9 2 2 4 6 6 6 0 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.1 gi|344212972|ref|YP_004797292.1| - 6.9 6.6 72.7 5.3 7.0 1.4 7.0 3 2 5 8 8 8 0 Domain of unknown function (DUF4200) DUF1292 PF06949.6 gi|344212973|ref|YP_004797293.1| - 0.059 13.7 0.0 0.085 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1292) CRCB PF02537.10 gi|344212974|ref|YP_004797294.1| - 8.6e-20 70.7 11.3 1.1e-19 70.3 7.8 1.2 1 0 0 1 1 1 1 CrcB-like protein Herpes_pp38 PF04846.8 gi|344212974|ref|YP_004797294.1| - 0.37 10.1 3.6 5.4 6.4 0.0 2.7 2 1 0 2 2 2 0 Herpesvirus pp38 phosphoprotein CRCB PF02537.10 gi|344212975|ref|YP_004797295.1| - 3.4e-23 81.7 12.8 4e-23 81.5 8.9 1.0 1 0 0 1 1 1 1 CrcB-like protein AAA_10 PF12846.2 gi|344212976|ref|YP_004797296.1| - 5.7e-18 65.3 0.0 1.6e-09 37.6 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|344212976|ref|YP_004797296.1| - 4.4e-07 28.6 0.6 0.00068 18.1 0.1 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|344212976|ref|YP_004797296.1| - 4.4e-07 29.5 0.1 0.00046 19.7 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|344212976|ref|YP_004797296.1| - 2.6e-06 27.4 0.0 3.9e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|344212976|ref|YP_004797296.1| - 2.1e-05 23.3 0.0 0.057 12.0 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|344212976|ref|YP_004797296.1| - 0.0055 16.8 0.0 1.2 9.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344212976|ref|YP_004797296.1| - 0.033 13.7 0.4 0.33 10.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|344212976|ref|YP_004797296.1| - 0.038 13.4 0.2 1.5 8.2 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) KH_4 PF13083.1 gi|344212976|ref|YP_004797296.1| - 0.37 10.4 1.0 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 KH domain Big_1 PF02369.11 gi|344212977|ref|YP_004797297.1| - 1.2e-05 25.0 6.4 1.9e-05 24.4 4.4 1.4 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|344212977|ref|YP_004797297.1| - 0.00048 20.1 5.0 0.00048 20.1 3.5 1.8 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|344212977|ref|YP_004797297.1| - 0.024 14.2 0.7 0.057 13.0 0.5 1.6 1 0 0 1 1 1 0 Salmonella repeat of unknown function (DUF824) MG1 PF11974.3 gi|344212977|ref|YP_004797297.1| - 0.024 15.1 0.7 0.035 14.6 0.5 1.3 1 0 0 1 1 1 0 Alpha-2-macroglobulin MG1 domain YtkA PF13115.1 gi|344212977|ref|YP_004797297.1| - 0.046 14.0 2.6 0.19 12.0 1.0 2.0 1 1 0 2 2 2 0 YtkA-like DUF4480 PF13715.1 gi|344212977|ref|YP_004797297.1| - 0.061 13.3 0.5 0.095 12.7 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4480) PCMT PF01135.14 gi|344212978|ref|YP_004797298.1| - 2.1e-37 128.6 0.0 2.7e-37 128.3 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|344212978|ref|YP_004797298.1| - 2.1e-07 30.6 0.0 2.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344212978|ref|YP_004797298.1| - 4.4e-07 29.4 0.1 7.8e-07 28.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|344212978|ref|YP_004797298.1| - 4.4e-07 30.4 0.3 7.7e-07 29.6 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212978|ref|YP_004797298.1| - 1.6e-06 28.1 1.9 3.7e-06 26.9 1.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|344212978|ref|YP_004797298.1| - 0.00015 20.9 0.0 0.00025 20.1 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|344212978|ref|YP_004797298.1| - 0.00053 20.4 0.0 0.00096 19.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|344212978|ref|YP_004797298.1| - 0.0011 19.3 0.0 0.0026 18.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344212978|ref|YP_004797298.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|344212978|ref|YP_004797298.1| - 0.031 13.3 0.2 0.1 11.7 0.1 1.7 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.1 gi|344212978|ref|YP_004797298.1| - 0.046 13.4 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|344212978|ref|YP_004797298.1| - 0.058 12.9 0.1 0.094 12.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein PCMT PF01135.14 gi|344212979|ref|YP_004797299.1| - 3e-61 206.6 0.0 3.3e-61 206.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|344212979|ref|YP_004797299.1| - 1.6e-06 28.6 0.0 2.4e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344212979|ref|YP_004797299.1| - 1.7e-06 28.0 0.2 3.2e-06 27.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain GCD14 PF08704.5 gi|344212979|ref|YP_004797299.1| - 3.2e-06 26.8 0.0 4e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|344212979|ref|YP_004797299.1| - 0.00017 21.2 0.0 0.00022 20.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|344212979|ref|YP_004797299.1| - 0.0002 20.7 0.0 0.00029 20.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|344212979|ref|YP_004797299.1| - 0.0013 17.8 0.0 0.0025 16.8 0.0 1.4 2 0 0 2 2 2 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|344212979|ref|YP_004797299.1| - 0.011 14.8 0.0 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|344212979|ref|YP_004797299.1| - 0.028 13.9 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Fibrillarin PF01269.12 gi|344212979|ref|YP_004797299.1| - 0.11 11.3 0.1 0.21 10.4 0.0 1.4 2 0 0 2 2 2 0 Fibrillarin Lar_restr_allev PF14354.1 gi|344212980|ref|YP_004797300.1| - 0.01 16.1 0.5 0.03 14.6 0.3 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|344212980|ref|YP_004797300.1| - 0.013 15.0 0.9 0.032 13.7 0.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF2387 PF09526.5 gi|344212980|ref|YP_004797300.1| - 0.013 15.3 0.7 0.028 14.3 0.5 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF4265 PF14085.1 gi|344212980|ref|YP_004797300.1| - 0.039 13.6 0.1 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) zinc_ribbon_4 PF13717.1 gi|344212980|ref|YP_004797300.1| - 0.082 12.6 2.2 0.36 10.5 1.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain GTP_EFTU_D2 PF03144.20 gi|344212980|ref|YP_004797300.1| - 0.098 12.7 0.1 0.32 11.1 0.0 1.9 2 0 0 2 2 2 0 Elongation factor Tu domain 2 DUF1648 PF07853.6 gi|344212981|ref|YP_004797301.1| - 4.6e-19 67.6 0.5 4.6e-19 67.6 0.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1648) DUF2637 PF10935.3 gi|344212981|ref|YP_004797301.1| - 1.4 8.8 7.8 9 6.2 5.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2637) DUF3995 PF13160.1 gi|344212981|ref|YP_004797301.1| - 1.5 8.9 11.0 0.13 12.3 3.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3995) Sdh_cyt PF01127.17 gi|344212981|ref|YP_004797301.1| - 6.1 6.7 8.2 0.4 10.5 0.4 2.1 1 1 1 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Peptidase_M29 PF02073.10 gi|344212982|ref|YP_004797302.1| - 4.1e-21 75.2 0.2 1.9e-17 63.1 0.2 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) DUF4340 PF14238.1 gi|344212982|ref|YP_004797302.1| - 0.055 13.1 0.0 4 7.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4340) Gp_dh_C PF02800.15 gi|344212983|ref|YP_004797303.1| - 4.6e-19 68.3 0.0 8.8e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|344212983|ref|YP_004797303.1| - 9.7e-17 61.3 0.1 5.9e-16 58.7 0.1 2.2 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|344212983|ref|YP_004797303.1| - 2e-08 34.2 0.1 3.7e-08 33.3 0.1 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|344212983|ref|YP_004797303.1| - 0.002 18.5 0.1 0.0086 16.4 0.0 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|344212983|ref|YP_004797303.1| - 0.0029 16.7 0.3 0.031 13.4 0.2 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|344212983|ref|YP_004797303.1| - 0.0092 16.2 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|344212983|ref|YP_004797303.1| - 0.037 14.5 0.0 0.084 13.3 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.2 gi|344212984|ref|YP_004797304.1| - 9.8e-32 109.9 0.1 1.1e-31 109.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344212984|ref|YP_004797304.1| - 2.7e-05 23.6 2.2 0.0034 16.7 1.5 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF4223 PF13978.1 gi|344212984|ref|YP_004797304.1| - 0.088 12.5 0.2 0.61 9.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4223) TM2 PF05154.11 gi|344212985|ref|YP_004797305.1| - 0.091 12.9 0.6 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 TM2 domain Kinocilin PF15033.1 gi|344212985|ref|YP_004797305.1| - 0.26 10.8 1.7 0.35 10.4 1.2 1.2 1 0 0 1 1 1 0 Kinocilin protein UvrD-helicase PF00580.16 gi|344212986|ref|YP_004797306.1| - 2.5e-25 89.4 0.0 1.2e-11 44.5 0.0 2.5 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|344212986|ref|YP_004797306.1| - 3.7e-14 52.9 0.1 1.6e-09 37.7 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|344212986|ref|YP_004797306.1| - 1.4e-11 44.0 0.1 5.9e-11 41.9 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|344212986|ref|YP_004797306.1| - 8.9e-08 32.2 1.0 3.5e-06 27.0 0.3 3.0 2 1 0 2 2 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|344212986|ref|YP_004797306.1| - 1.7e-06 27.7 0.0 1.7 8.0 0.0 4.0 3 1 0 3 3 3 3 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.10 gi|344212986|ref|YP_004797306.1| - 0.00048 18.2 0.0 0.00074 17.6 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_30 PF13604.1 gi|344212986|ref|YP_004797306.1| - 0.00074 19.1 0.0 0.021 14.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|344212986|ref|YP_004797306.1| - 0.0016 18.5 0.0 0.49 10.5 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|344212986|ref|YP_004797306.1| - 0.014 15.0 0.0 0.063 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|344212986|ref|YP_004797306.1| - 0.016 14.6 1.9 0.81 9.0 0.0 3.2 3 1 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|344212986|ref|YP_004797306.1| - 0.051 13.4 0.0 10 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|344212986|ref|YP_004797306.1| - 0.051 12.5 0.0 1.2 8.0 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_12 PF13087.1 gi|344212986|ref|YP_004797306.1| - 0.11 11.8 0.0 0.44 9.8 0.0 1.9 3 0 0 3 3 3 0 AAA domain TniQ PF06527.6 gi|344212986|ref|YP_004797306.1| - 0.13 12.4 0.2 0.59 10.3 0.1 2.0 2 0 0 2 2 2 0 TniQ DUF1504 PF07399.6 gi|344212987|ref|YP_004797307.1| - 0.0053 15.4 1.1 0.0057 15.3 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1504) QueT PF06177.6 gi|344212987|ref|YP_004797307.1| - 0.16 11.9 5.2 0.21 11.5 3.6 1.3 1 0 0 1 1 1 0 QueT transporter DUF202 PF02656.10 gi|344212987|ref|YP_004797307.1| - 9 6.5 7.5 32 4.8 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF202) HTH_20 PF12840.2 gi|344212988|ref|YP_004797308.1| - 6.1e-10 38.7 0.3 8.5e-10 38.2 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344212988|ref|YP_004797308.1| - 7.3e-07 28.4 0.0 1.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344212988|ref|YP_004797308.1| - 4.4e-06 26.2 0.1 6.6e-06 25.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|344212988|ref|YP_004797308.1| - 1.7e-05 24.3 0.0 2.7e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|344212988|ref|YP_004797308.1| - 0.00011 21.7 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|344212988|ref|YP_004797308.1| - 0.00066 19.1 0.3 0.0015 18.0 0.1 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FUR PF01475.14 gi|344212988|ref|YP_004797308.1| - 0.0016 18.3 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_5 PF01022.15 gi|344212988|ref|YP_004797308.1| - 0.0023 17.5 0.0 0.0041 16.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|344212988|ref|YP_004797308.1| - 0.004 16.8 0.1 0.0077 15.9 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|344212988|ref|YP_004797308.1| - 0.0097 15.8 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|344212988|ref|YP_004797308.1| - 0.029 14.0 0.0 0.055 13.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_7 PF02796.10 gi|344212988|ref|YP_004797308.1| - 0.031 14.1 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|344212988|ref|YP_004797308.1| - 0.056 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|344212988|ref|YP_004797308.1| - 0.087 13.1 0.1 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ArsR PF09824.4 gi|344212988|ref|YP_004797308.1| - 0.097 11.9 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator PadR PF03551.9 gi|344212989|ref|YP_004797309.1| - 2.1e-08 33.7 0.0 4e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family zf-ribbon_3 PF13248.1 gi|344212990|ref|YP_004797310.1| - 0.0086 15.2 3.3 0.014 14.6 2.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|344212990|ref|YP_004797310.1| - 0.0087 15.8 0.9 0.01 15.6 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344212990|ref|YP_004797310.1| - 0.012 15.0 3.6 0.017 14.6 2.5 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|344212990|ref|YP_004797310.1| - 0.056 13.3 1.0 7.2 6.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.6 gi|344212990|ref|YP_004797310.1| - 0.085 12.5 2.7 0.2 11.3 1.9 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|344212990|ref|YP_004797310.1| - 0.19 11.4 4.1 0.53 10.0 2.8 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|344212990|ref|YP_004797310.1| - 0.24 10.9 3.0 1.8 8.1 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|344212990|ref|YP_004797310.1| - 0.5 10.3 4.8 1.4 8.9 0.6 2.2 1 1 1 2 2 2 0 Zinc ribbon domain PBP PF01161.15 gi|344212991|ref|YP_004797311.1| - 1e-19 70.8 0.0 1.2e-19 70.5 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein COX1 PF00115.15 gi|344212992|ref|YP_004797312.1| - 2.5e-46 158.2 50.2 5.7e-46 157.0 34.8 1.6 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.3 gi|344212992|ref|YP_004797312.1| - 0.014 15.5 1.6 0.014 15.5 1.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2871) DUF4307 PF14155.1 gi|344212992|ref|YP_004797312.1| - 8.2 6.2 5.5 20 5.0 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) Abhydrolase_5 PF12695.2 gi|344212993|ref|YP_004797313.1| - 2.8e-15 56.3 0.1 5.3e-15 55.4 0.1 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|344212993|ref|YP_004797313.1| - 1.8e-14 54.1 0.2 2.9e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|344212993|ref|YP_004797313.1| - 3e-09 35.8 0.0 5e-06 25.2 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.15 gi|344212993|ref|YP_004797313.1| - 4.6e-07 29.6 0.1 7.4e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|344212993|ref|YP_004797313.1| - 1.4e-06 27.7 0.1 5.6e-06 25.7 0.1 1.9 1 1 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.3 gi|344212993|ref|YP_004797313.1| - 1.5e-05 24.7 0.0 2.9e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|344212993|ref|YP_004797313.1| - 0.0001 21.8 0.1 0.00018 21.0 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|344212993|ref|YP_004797313.1| - 0.0028 17.0 0.1 0.0079 15.6 0.0 1.7 2 0 0 2 2 2 1 Putative esterase BAAT_C PF08840.6 gi|344212993|ref|YP_004797313.1| - 0.023 14.4 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal PAF-AH_p_II PF03403.8 gi|344212993|ref|YP_004797313.1| - 0.023 13.0 0.0 3.7 5.7 0.0 2.1 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DLH PF01738.13 gi|344212993|ref|YP_004797313.1| - 0.025 13.8 0.0 0.18 11.0 0.0 2.0 2 0 0 2 2 2 0 Dienelactone hydrolase family Abi PF02517.11 gi|344212993|ref|YP_004797313.1| - 9.3 6.4 18.0 4.7e+02 1.0 12.4 2.7 1 1 0 1 1 1 0 CAAX protease self-immunity Glyoxalase PF00903.20 gi|344212995|ref|YP_004797315.1| - 8.4e-19 67.8 0.0 5.9e-18 65.0 0.0 2.7 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|344212995|ref|YP_004797315.1| - 9.5e-10 39.0 3.1 0.00013 22.5 0.3 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|344212995|ref|YP_004797315.1| - 3.8e-06 26.8 0.3 0.0071 16.3 0.0 3.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTP_transf_2 PF01467.21 gi|344212996|ref|YP_004797316.1| - 1e-07 32.1 1.2 0.00036 20.6 0.5 2.2 1 1 0 2 2 2 2 Cytidylyltransferase FAD_syn PF06574.7 gi|344212996|ref|YP_004797316.1| - 0.047 13.3 0.4 0.076 12.6 0.3 1.5 1 0 0 1 1 1 0 FAD synthetase MDMPI_N PF11716.3 gi|344212996|ref|YP_004797316.1| - 1 9.7 6.7 4 7.8 4.7 1.9 1 1 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain ABC_tran PF00005.22 gi|344212997|ref|YP_004797317.1| - 5.2e-29 101.2 0.0 7.1e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344212997|ref|YP_004797317.1| - 1.7e-14 54.4 0.0 4.4e-07 30.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344212997|ref|YP_004797317.1| - 9e-05 21.9 0.0 0.00017 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|344212997|ref|YP_004797317.1| - 0.00014 21.7 0.0 0.0018 18.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|344212997|ref|YP_004797317.1| - 0.00019 21.2 0.0 0.00039 20.2 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|344212997|ref|YP_004797317.1| - 0.0002 20.6 0.0 0.33 10.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|344212997|ref|YP_004797317.1| - 0.00097 18.5 0.3 0.0036 16.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|344212997|ref|YP_004797317.1| - 0.0027 17.3 0.0 0.012 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|344212997|ref|YP_004797317.1| - 0.0031 16.6 0.0 0.98 8.3 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|344212997|ref|YP_004797317.1| - 0.0083 16.1 2.4 0.028 14.4 1.7 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|344212997|ref|YP_004797317.1| - 0.01 16.1 0.0 0.014 15.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|344212997|ref|YP_004797317.1| - 0.026 13.9 0.2 0.6 9.5 0.0 2.5 2 1 1 3 3 3 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|344212997|ref|YP_004797317.1| - 0.045 13.7 0.0 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|344212997|ref|YP_004797317.1| - 0.049 12.8 0.0 0.072 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|344212997|ref|YP_004797317.1| - 0.059 14.2 0.4 0.17 12.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain HTH_26 PF13443.1 gi|344212997|ref|YP_004797317.1| - 0.09 12.9 0.0 0.42 10.8 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain ArgK PF03308.11 gi|344212997|ref|YP_004797317.1| - 0.13 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_19 PF13245.1 gi|344212997|ref|YP_004797317.1| - 0.13 12.0 2.3 0.25 11.1 0.0 2.6 3 1 0 3 3 3 0 Part of AAA domain CbiQ PF02361.11 gi|344212998|ref|YP_004797318.1| - 2.1e-28 99.4 9.0 2.8e-28 99.0 6.3 1.1 1 0 0 1 1 1 1 Cobalt transport protein DsrH PF04077.7 gi|344212998|ref|YP_004797318.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 DsrH like protein PDGLE PF13190.1 gi|344212999|ref|YP_004797319.1| - 7.3e-14 51.2 4.3 1e-13 50.7 3.0 1.2 1 0 0 1 1 1 1 PDGLE domain Yip1 PF04893.12 gi|344212999|ref|YP_004797319.1| - 0.0041 16.6 0.8 0.0048 16.4 0.6 1.2 1 0 0 1 1 1 1 Yip1 domain PT-TG PF14449.1 gi|344212999|ref|YP_004797319.1| - 0.047 13.4 0.5 0.14 11.9 0.0 1.9 1 1 1 2 2 2 0 Pre-toxin TG Transgly_assoc PF04226.8 gi|344212999|ref|YP_004797319.1| - 2.6 8.1 10.4 0.61 10.1 2.7 2.5 2 1 1 3 3 3 0 Transglycosylase associated protein Chlorosome_CsmC PF11098.3 gi|344212999|ref|YP_004797319.1| - 9.9 5.8 6.6 3.9 7.1 1.9 1.8 1 1 1 2 2 2 0 Chlorosome envelope protein C CbiM PF01891.11 gi|344213000|ref|YP_004797320.1| - 1.3e-64 217.5 19.8 1.4e-64 217.4 13.7 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region DUF3816 PF12822.2 gi|344213000|ref|YP_004797320.1| - 2.6 7.8 17.9 7.2 6.4 12.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) NikR_C PF08753.6 gi|344213001|ref|YP_004797321.1| - 4e-26 90.7 7.1 5.2e-26 90.3 4.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|344213001|ref|YP_004797321.1| - 0.00036 20.2 0.1 0.0011 18.7 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RNA_GG_bind PF10258.4 gi|344213001|ref|YP_004797321.1| - 0.00098 18.7 0.1 0.0014 18.2 0.1 1.2 1 0 0 1 1 1 1 PHAX RNA-binding domain tRNA_NucTransf2 PF09249.6 gi|344213002|ref|YP_004797322.1| - 2e-40 137.2 0.0 3.2e-40 136.5 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|344213002|ref|YP_004797322.1| - 5.9e-14 52.1 0.0 1.3e-13 51.0 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|344213003|ref|YP_004797323.1| - 1.6e-84 283.8 0.1 1.9e-84 283.5 0.1 1.0 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.18 gi|344213004|ref|YP_004797324.1| - 1e-22 79.9 0.1 5.5e-13 48.7 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|344213004|ref|YP_004797324.1| - 3.1e-15 56.0 0.1 1.8e-08 34.3 0.0 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|344213004|ref|YP_004797324.1| - 0.011 15.8 0.5 0.02 15.0 0.3 1.4 1 0 0 1 1 1 0 Kinetochore component CENP-S DUF1931 PF09123.6 gi|344213004|ref|YP_004797324.1| - 0.094 12.6 0.5 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) tRNA_anti-codon PF01336.20 gi|344213005|ref|YP_004797325.1| - 3.5e-30 103.6 7.3 3.2e-12 46.1 0.1 4.0 4 1 0 4 4 4 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|344213005|ref|YP_004797325.1| - 0.088 12.5 0.1 31 4.2 0.0 3.0 3 0 0 3 3 3 0 Replication factor-A C terminal domain DUF309 PF03745.9 gi|344213007|ref|YP_004797327.1| - 8.3e-16 57.2 3.4 1.4e-15 56.4 2.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) DisA_N PF02457.11 gi|344213008|ref|YP_004797328.1| - 7.6e-08 31.5 0.1 1.4e-07 30.7 0.1 1.4 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding Epimerase PF01370.16 gi|344213009|ref|YP_004797329.1| - 7e-22 78.0 0.0 1.6e-21 76.7 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344213009|ref|YP_004797329.1| - 1.5e-14 53.4 0.0 2.6e-14 52.6 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|344213009|ref|YP_004797329.1| - 3e-12 46.0 0.0 3.8e-11 42.3 0.0 2.0 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|344213009|ref|YP_004797329.1| - 7.2e-11 41.5 0.3 1.4e-07 30.7 0.2 3.0 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|344213009|ref|YP_004797329.1| - 8.9e-11 42.1 0.0 1.1e-10 41.8 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|344213009|ref|YP_004797329.1| - 6.2e-05 22.9 0.3 0.0021 17.9 0.2 2.2 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344213009|ref|YP_004797329.1| - 0.0055 16.3 0.1 0.35 10.5 0.0 2.3 1 1 0 1 1 1 1 KR domain RmlD_sub_bind PF04321.12 gi|344213009|ref|YP_004797329.1| - 0.0098 14.8 0.0 0.02 13.7 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|344213009|ref|YP_004797329.1| - 0.072 12.3 0.2 0.15 11.3 0.1 1.5 1 1 0 1 1 1 0 NmrA-like family DUF381 PF04038.7 gi|344213010|ref|YP_004797330.1| - 7.3e-22 77.1 0.5 9.3e-22 76.8 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|344213010|ref|YP_004797330.1| - 3.8e-20 71.0 2.3 9.9e-20 69.7 0.4 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF372) GPW_gp25 PF04965.9 gi|344213010|ref|YP_004797330.1| - 0.0059 16.1 0.0 0.012 15.0 0.0 1.6 1 1 1 2 2 2 1 Gene 25-like lysozyme SbmA_BacA PF05992.7 gi|344213011|ref|YP_004797331.1| - 0.03 13.5 5.7 0.048 12.8 3.9 1.3 1 0 0 1 1 1 0 SbmA/BacA-like family DUF4398 PF14346.1 gi|344213012|ref|YP_004797332.1| - 0.0023 17.9 1.9 0.0067 16.4 1.3 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4398) Phe_tRNA-synt_N PF02912.13 gi|344213012|ref|YP_004797332.1| - 0.03 14.0 0.0 0.095 12.4 0.0 1.9 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain Laminin_II PF06009.7 gi|344213012|ref|YP_004797332.1| - 0.038 13.7 0.3 0.2 11.3 0.0 2.0 1 1 1 2 2 2 0 Laminin Domain II Syntaxin PF00804.20 gi|344213012|ref|YP_004797332.1| - 0.07 13.2 0.1 0.14 12.3 0.1 1.5 1 0 0 1 1 1 0 Syntaxin DUF1386 PF07138.6 gi|344213012|ref|YP_004797332.1| - 0.084 11.9 0.1 0.089 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) IncA PF04156.9 gi|344213012|ref|YP_004797332.1| - 0.17 11.4 0.5 1.2 8.6 0.0 2.0 2 0 0 2 2 2 0 IncA protein DUF883 PF05957.8 gi|344213012|ref|YP_004797332.1| - 0.66 10.4 3.6 6.2 7.2 0.1 2.9 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) TraF_2 PF13729.1 gi|344213012|ref|YP_004797332.1| - 0.75 8.5 8.9 0.079 11.7 3.2 1.4 2 0 0 2 2 2 0 F plasmid transfer operon, TraF, protein DUF4399 PF14347.1 gi|344213013|ref|YP_004797333.1| - 5.5e-36 122.4 6.5 3.4e-23 81.4 0.5 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4399) COX2 PF00116.15 gi|344213015|ref|YP_004797335.1| - 6.9e-21 74.3 0.0 1.2e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|344213015|ref|YP_004797335.1| - 0.00037 20.3 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 Cupredoxin-like domain COX14 PF14880.1 gi|344213015|ref|YP_004797335.1| - 0.011 15.3 0.9 0.066 12.8 0.6 2.1 2 0 0 2 2 2 0 Cytochrome oxidase c assembly ATPase_gene1 PF09527.5 gi|344213015|ref|YP_004797335.1| - 0.098 12.4 0.3 0.22 11.3 0.2 1.6 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) Oxidored_q1_N PF00662.15 gi|344213015|ref|YP_004797335.1| - 9.4 5.8 6.7 1.6 8.3 0.5 2.2 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus COX1 PF00115.15 gi|344213016|ref|YP_004797336.1| - 4.8e-134 447.3 63.3 4.8e-134 447.3 43.9 2.8 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|344213016|ref|YP_004797336.1| - 1e-19 71.0 14.5 1e-19 71.0 10.1 3.4 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III COX4_pro PF03626.9 gi|344213017|ref|YP_004797337.1| - 6.8e-10 38.8 9.8 8.1e-10 38.6 6.8 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF441 PF04284.8 gi|344213017|ref|YP_004797337.1| - 0.041 13.7 1.5 0.054 13.3 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF441) Tmpp129 PF10272.4 gi|344213017|ref|YP_004797337.1| - 0.05 12.3 0.6 0.056 12.1 0.4 1.0 1 0 0 1 1 1 0 Putative transmembrane protein precursor LrgA PF03788.9 gi|344213017|ref|YP_004797337.1| - 0.32 10.7 4.0 0.94 9.2 2.8 1.7 1 1 0 1 1 1 0 LrgA family DUF2648 PF10855.3 gi|344213017|ref|YP_004797337.1| - 7.9 5.9 6.4 5.1 6.6 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2648) DUF3040 PF11239.3 gi|344213018|ref|YP_004797338.1| - 0.047 13.7 5.5 0.62 10.1 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) MerC PF03203.9 gi|344213018|ref|YP_004797338.1| - 0.29 11.5 5.3 0.47 10.8 3.7 1.3 1 0 0 1 1 1 0 MerC mercury resistance protein DUF3487 PF11990.3 gi|344213018|ref|YP_004797338.1| - 0.39 10.1 4.8 0.17 11.3 1.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF2530 PF10745.4 gi|344213018|ref|YP_004797338.1| - 0.58 10.1 10.8 0.48 10.4 5.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) TatC PF00902.13 gi|344213019|ref|YP_004797339.1| - 0.00084 18.8 0.9 0.00084 18.8 0.6 2.3 2 2 1 3 3 3 1 Sec-independent protein translocase protein (TatC) DUF1129 PF06570.6 gi|344213019|ref|YP_004797339.1| - 0.0029 16.9 0.4 0.0035 16.6 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) YwiC PF14256.1 gi|344213019|ref|YP_004797339.1| - 0.0029 17.6 3.7 0.0063 16.6 2.6 1.6 1 1 0 1 1 1 1 YwiC-like protein Ion_trans PF00520.26 gi|344213019|ref|YP_004797339.1| - 0.025 13.8 0.1 0.029 13.5 0.0 1.1 1 0 0 1 1 1 0 Ion transport protein Acyl_transf_3 PF01757.17 gi|344213019|ref|YP_004797339.1| - 0.025 13.4 3.3 0.036 12.9 2.3 1.2 1 0 0 1 1 1 0 Acyltransferase family Kei1 PF08552.6 gi|344213019|ref|YP_004797339.1| - 0.074 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Inositolphosphorylceramide synthase subunit Kei1 NfeD PF01957.13 gi|344213019|ref|YP_004797339.1| - 1.3 9.1 3.7 6.1 6.9 0.9 2.1 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DUF2648 PF10855.3 gi|344213019|ref|YP_004797339.1| - 2.7 7.4 5.9 3.2 7.2 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) UPF0104 PF03706.8 gi|344213019|ref|YP_004797339.1| - 2.8 7.1 9.5 4 6.6 0.2 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0104) ABC_tran PF00005.22 gi|344213020|ref|YP_004797340.1| - 1.1e-37 129.3 0.1 2.8e-37 128.0 0.0 1.7 2 0 0 2 2 1 1 ABC transporter ABC_membrane PF00664.18 gi|344213020|ref|YP_004797340.1| - 3.7e-34 118.3 0.5 5.2e-34 117.9 0.3 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.1 gi|344213020|ref|YP_004797340.1| - 1.9e-06 28.0 0.1 3.6e-06 27.0 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|344213020|ref|YP_004797340.1| - 5.9e-05 23.1 0.0 0.0043 17.0 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344213020|ref|YP_004797340.1| - 0.00027 21.7 0.4 0.0012 19.6 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344213020|ref|YP_004797340.1| - 0.00028 21.0 0.5 0.0029 17.7 0.3 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344213020|ref|YP_004797340.1| - 0.00037 19.7 0.1 0.017 14.3 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|344213020|ref|YP_004797340.1| - 0.00043 19.5 0.0 0.00096 18.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|344213020|ref|YP_004797340.1| - 0.0011 18.1 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|344213020|ref|YP_004797340.1| - 0.0026 17.6 0.0 0.0075 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|344213020|ref|YP_004797340.1| - 0.0028 17.1 0.1 0.0085 15.6 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|344213020|ref|YP_004797340.1| - 0.0039 17.1 0.1 0.17 11.8 0.0 2.8 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|344213020|ref|YP_004797340.1| - 0.0059 16.9 0.0 0.018 15.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|344213020|ref|YP_004797340.1| - 0.021 14.5 0.4 0.19 11.4 0.1 2.7 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|344213020|ref|YP_004797340.1| - 0.028 14.0 0.1 0.054 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|344213020|ref|YP_004797340.1| - 0.042 13.2 0.2 0.16 11.3 0.1 1.9 1 1 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.1 gi|344213020|ref|YP_004797340.1| - 0.044 14.1 0.0 0.084 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|344213020|ref|YP_004797340.1| - 0.049 13.1 0.6 0.24 10.9 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|344213020|ref|YP_004797340.1| - 0.061 12.7 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain AAA_14 PF13173.1 gi|344213020|ref|YP_004797340.1| - 0.1 12.5 0.1 0.52 10.2 0.0 2.2 1 1 1 2 2 2 0 AAA domain MobB PF03205.9 gi|344213020|ref|YP_004797340.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B O-antigen_lig PF13425.1 gi|344213020|ref|YP_004797340.1| - 0.1 12.5 0.2 0.1 12.5 0.2 2.6 3 1 0 3 3 3 0 O-antigen ligase like membrane protein DUF192 PF02643.10 gi|344213021|ref|YP_004797341.1| - 3e-33 113.7 0.0 5e-33 113.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 DUF2020 PF09449.5 gi|344213021|ref|YP_004797341.1| - 0.031 13.9 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2020) DUF1905 PF08922.6 gi|344213021|ref|YP_004797341.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) OrfB_Zn_ribbon PF07282.6 gi|344213022|ref|YP_004797342.1| - 0.00039 20.0 1.4 0.00046 19.7 1.0 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|344213022|ref|YP_004797342.1| - 0.00042 20.1 4.2 0.033 14.1 0.8 2.1 2 0 0 2 2 2 2 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|344213022|ref|YP_004797342.1| - 0.00072 19.2 0.4 0.00081 19.1 0.3 1.0 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|344213022|ref|YP_004797342.1| - 0.0016 18.1 0.4 0.002 17.8 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain PADR1 PF08063.7 gi|344213022|ref|YP_004797342.1| - 0.0037 16.6 0.9 0.0043 16.4 0.6 1.2 1 0 0 1 1 1 1 PADR1 (NUC008) domain zf-C2H2_6 PF13912.1 gi|344213022|ref|YP_004797342.1| - 0.0061 16.4 1.9 0.019 14.8 0.1 2.0 2 0 0 2 2 2 1 C2H2-type zinc finger DZR PF12773.2 gi|344213022|ref|YP_004797342.1| - 0.0071 16.1 0.5 0.0091 15.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-C2H2 PF00096.21 gi|344213022|ref|YP_004797342.1| - 0.0077 16.5 1.7 0.022 15.0 0.1 2.0 2 0 0 2 2 2 1 Zinc finger, C2H2 type C1_1 PF00130.17 gi|344213022|ref|YP_004797342.1| - 0.024 14.3 0.2 0.024 14.3 0.1 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|344213022|ref|YP_004797342.1| - 0.031 14.0 2.6 0.68 9.7 0.2 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|344213022|ref|YP_004797342.1| - 0.035 13.3 1.1 1.9 7.8 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|344213022|ref|YP_004797342.1| - 0.041 14.1 4.3 0.046 14.0 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|344213022|ref|YP_004797342.1| - 0.043 13.5 3.2 0.33 10.6 2.2 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-AN1 PF01428.11 gi|344213022|ref|YP_004797342.1| - 0.064 13.1 3.2 0.97 9.3 2.4 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2H2_4 PF13894.1 gi|344213022|ref|YP_004797342.1| - 0.07 13.5 0.6 2.4 8.6 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Rep_fac-A_C PF08646.5 gi|344213022|ref|YP_004797342.1| - 0.08 12.6 0.2 0.092 12.4 0.1 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain DnaJ_CXXCXGXG PF00684.14 gi|344213022|ref|YP_004797342.1| - 0.11 12.5 2.1 0.14 12.2 1.5 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-Mss51 PF13824.1 gi|344213022|ref|YP_004797342.1| - 0.14 12.0 1.6 0.18 11.6 1.1 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-dskA_traR PF01258.12 gi|344213022|ref|YP_004797342.1| - 0.15 11.8 0.3 0.15 11.8 0.2 1.9 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_5 PF13719.1 gi|344213022|ref|YP_004797342.1| - 0.15 11.6 1.2 3.5 7.2 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344213022|ref|YP_004797342.1| - 0.16 11.7 1.0 4.1 7.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|344213022|ref|YP_004797342.1| - 0.21 11.7 0.1 0.21 11.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TFIIS_C PF01096.13 gi|344213022|ref|YP_004797342.1| - 0.27 10.9 3.6 1.6 8.3 0.1 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|344213022|ref|YP_004797342.1| - 0.4 9.9 2.6 0.6 9.3 1.8 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.7 gi|344213022|ref|YP_004797342.1| - 0.53 9.6 6.3 0.84 9.0 4.4 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|344213022|ref|YP_004797342.1| - 0.62 10.0 3.2 1.4 8.8 2.2 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-C4_Topoisom PF01396.14 gi|344213022|ref|YP_004797342.1| - 0.92 9.0 4.0 1.6 8.3 0.1 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Lar_restr_allev PF14354.1 gi|344213022|ref|YP_004797342.1| - 1 9.6 4.0 2.2 8.6 2.7 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar ACT PF01842.20 gi|344213023|ref|YP_004797343.1| - 0.026 13.9 1.4 0.074 12.5 0.1 2.4 2 2 0 2 2 2 0 ACT domain PRC PF05239.11 gi|344213024|ref|YP_004797344.1| - 0.059 13.2 0.3 0.13 12.1 0.1 1.8 1 1 1 2 2 2 0 PRC-barrel domain Methyltransf_11 PF08241.7 gi|344213025|ref|YP_004797345.1| - 4.9e-11 42.9 0.0 8.8e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344213025|ref|YP_004797345.1| - 0.00011 22.5 0.0 0.00027 21.2 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344213025|ref|YP_004797345.1| - 0.00039 19.5 0.0 0.00055 19.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|344213025|ref|YP_004797345.1| - 0.0031 17.2 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344213025|ref|YP_004797345.1| - 0.0033 17.8 0.0 0.0056 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344213025|ref|YP_004797345.1| - 0.0098 15.4 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain HSP20 PF00011.16 gi|344213026|ref|YP_004797346.1| - 6.3e-18 64.5 0.1 8.3e-18 64.1 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family FAD-oxidase_C PF02913.14 gi|344213027|ref|YP_004797347.1| - 1.6e-60 204.5 0.1 3.9e-60 203.2 0.1 1.7 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|344213027|ref|YP_004797347.1| - 1.2e-40 138.2 0.0 2.4e-40 137.1 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|344213027|ref|YP_004797347.1| - 2.8e-08 33.9 4.1 6.5e-08 32.7 2.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|344213027|ref|YP_004797347.1| - 2e-07 30.8 6.0 4e-07 29.9 4.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|344213027|ref|YP_004797347.1| - 9.5e-07 28.7 0.0 0.00034 20.5 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_18 PF13746.1 gi|344213027|ref|YP_004797347.1| - 4e-05 23.9 3.2 0.0001 22.6 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|344213027|ref|YP_004797347.1| - 0.0008 18.6 0.0 0.0013 17.8 0.0 1.3 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|344213027|ref|YP_004797347.1| - 0.016 15.0 4.0 0.12 12.2 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344213027|ref|YP_004797347.1| - 0.034 14.8 1.3 0.41 11.4 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|344213027|ref|YP_004797347.1| - 0.15 11.9 9.7 0.083 12.6 1.4 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344213027|ref|YP_004797347.1| - 0.15 12.4 8.0 5.1 7.5 6.0 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344213027|ref|YP_004797347.1| - 0.41 10.9 10.2 0.13 12.5 1.5 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344213027|ref|YP_004797347.1| - 0.46 10.1 14.6 0.1 12.2 2.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|344213027|ref|YP_004797347.1| - 0.5 10.3 8.4 0.3 11.0 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|344213027|ref|YP_004797347.1| - 2 9.0 6.9 0.51 10.9 0.3 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain HATPase_c PF02518.21 gi|344213029|ref|YP_004797349.1| - 4.9e-12 45.5 0.1 1.4e-11 44.0 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|344213029|ref|YP_004797349.1| - 0.0092 15.7 0.1 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|344213029|ref|YP_004797349.1| - 0.038 13.9 0.5 0.11 12.4 0.1 1.9 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain CSD PF00313.17 gi|344213030|ref|YP_004797350.1| - 1.7e-20 72.5 0.1 1.8e-20 72.4 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|344213030|ref|YP_004797350.1| - 0.044 13.5 1.3 0.094 12.4 0.9 1.7 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|344213030|ref|YP_004797350.1| - 0.065 12.7 2.6 0.086 12.3 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.17 gi|344213031|ref|YP_004797351.1| - 1.2e-20 73.0 0.1 1.3e-20 72.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|344213031|ref|YP_004797351.1| - 0.0036 17.0 0.8 0.0051 16.5 0.5 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|344213031|ref|YP_004797351.1| - 0.015 14.7 2.6 0.022 14.2 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|344213031|ref|YP_004797351.1| - 0.018 14.8 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF DUF429 PF04250.8 gi|344213032|ref|YP_004797352.1| - 9.2e-48 162.2 1.9 1.1e-47 162.0 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) zf-HYPF PF07503.7 gi|344213034|ref|YP_004797354.1| - 0.0012 18.1 1.5 0.0041 16.5 0.1 2.1 2 0 0 2 2 2 1 HypF finger Lar_restr_allev PF14354.1 gi|344213034|ref|YP_004797354.1| - 0.0069 16.6 1.3 0.0088 16.3 0.9 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|344213034|ref|YP_004797354.1| - 0.0077 16.1 1.4 0.39 10.7 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|344213034|ref|YP_004797354.1| - 0.011 15.5 2.6 0.17 11.7 1.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon DUF2197 PF09963.4 gi|344213034|ref|YP_004797354.1| - 0.014 15.2 0.6 0.019 14.8 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) zf-IS66 PF13005.2 gi|344213034|ref|YP_004797354.1| - 0.024 14.6 2.6 0.16 11.9 0.3 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.1 gi|344213034|ref|YP_004797354.1| - 0.025 14.0 0.5 0.28 10.7 0.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Arc_trans_TRASH PF08394.5 gi|344213034|ref|YP_004797354.1| - 0.026 14.6 0.6 2.3 8.4 0.1 2.1 2 0 0 2 2 2 0 Archaeal TRASH domain HypA PF01155.14 gi|344213034|ref|YP_004797354.1| - 0.04 13.5 0.6 0.044 13.4 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Sgf11 PF08209.6 gi|344213034|ref|YP_004797354.1| - 0.093 12.0 2.5 1.7 8.0 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.1 gi|344213034|ref|YP_004797354.1| - 0.1 11.8 4.7 0.68 9.2 3.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|344213034|ref|YP_004797354.1| - 0.11 12.4 1.5 0.88 9.5 1.0 1.9 1 1 0 1 1 1 0 CpXC protein Prok-RING_1 PF14446.1 gi|344213034|ref|YP_004797354.1| - 0.13 11.9 2.7 5.4 6.8 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.14 gi|344213034|ref|YP_004797354.1| - 0.15 11.6 1.8 12 5.5 0.6 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_recom PF13408.1 gi|344213034|ref|YP_004797354.1| - 0.29 11.4 2.1 8.4 6.7 0.6 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Rubredoxin PF00301.15 gi|344213034|ref|YP_004797354.1| - 0.29 11.0 5.4 0.84 9.5 3.7 1.8 1 1 0 1 1 1 0 Rubredoxin Nudix_N_2 PF14803.1 gi|344213034|ref|YP_004797354.1| - 0.43 10.3 3.3 5.3 6.8 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF1272 PF06906.6 gi|344213034|ref|YP_004797354.1| - 0.45 10.4 3.3 2 8.3 2.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C2H2 PF00096.21 gi|344213034|ref|YP_004797354.1| - 0.69 10.3 2.7 26 5.3 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|344213034|ref|YP_004797354.1| - 6.8 6.7 7.8 29 4.7 0.5 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger NTP_transferase PF00483.18 gi|344213035|ref|YP_004797355.1| - 7.4e-36 123.7 0.0 8.7e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|344213035|ref|YP_004797355.1| - 1.6e-15 57.5 0.2 2e-15 57.2 0.1 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|344213035|ref|YP_004797355.1| - 6.1e-07 29.1 0.1 9.4e-07 28.5 0.1 1.8 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|344213035|ref|YP_004797355.1| - 0.077 12.6 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 2 LPAM_2 PF13627.1 gi|344213036|ref|YP_004797356.1| - 4.6 7.0 9.7 10 5.9 6.7 1.6 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site BPD_transp_1 PF00528.17 gi|344213037|ref|YP_004797357.1| - 5.5e-11 42.3 30.7 1.4e-09 37.6 21.3 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344213038|ref|YP_004797358.1| - 8e-14 51.5 16.9 8e-14 51.5 11.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|344213039|ref|YP_004797359.1| - 4.3e-29 102.1 10.9 6.1e-29 101.6 7.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344213039|ref|YP_004797359.1| - 2.8e-17 63.4 12.7 5.5e-17 62.4 8.6 1.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344213039|ref|YP_004797359.1| - 0.016 15.1 0.5 0.044 13.7 0.4 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Alpha-amylase PF00128.19 gi|344213040|ref|YP_004797360.1| - 4.3e-55 187.3 0.0 6.3e-55 186.7 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|344213040|ref|YP_004797360.1| - 3.1e-06 27.2 0.0 1.2e-05 25.2 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.13 gi|344213040|ref|YP_004797360.1| - 0.0016 18.5 0.0 0.015 15.3 0.0 2.6 3 0 0 3 3 3 1 Alpha amylase, C-terminal all-beta domain ABC_tran PF00005.22 gi|344213041|ref|YP_004797361.1| - 5.5e-33 114.1 0.0 8.6e-33 113.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|344213041|ref|YP_004797361.1| - 1.3e-11 44.3 0.4 2.4e-10 40.2 0.1 3.0 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|344213041|ref|YP_004797361.1| - 3.5e-09 37.0 0.0 3.6e-05 23.8 0.0 2.4 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|344213041|ref|YP_004797361.1| - 1.4e-08 34.7 0.1 2.1e-07 30.9 0.0 3.1 4 1 0 4 4 2 1 TOBE domain SMC_N PF02463.14 gi|344213041|ref|YP_004797361.1| - 0.00021 20.5 0.2 0.00088 18.5 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|344213041|ref|YP_004797361.1| - 0.004 17.2 0.2 0.0084 16.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344213041|ref|YP_004797361.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|344213041|ref|YP_004797361.1| - 0.0072 15.7 0.1 0.012 15.1 0.1 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|344213041|ref|YP_004797361.1| - 0.009 15.5 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|344213041|ref|YP_004797361.1| - 0.024 13.8 0.0 0.037 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|344213041|ref|YP_004797361.1| - 0.026 15.3 0.0 0.063 14.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|344213041|ref|YP_004797361.1| - 0.035 13.9 0.4 0.065 13.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|344213041|ref|YP_004797361.1| - 0.042 14.1 0.0 0.14 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|344213041|ref|YP_004797361.1| - 0.051 13.7 0.0 0.17 12.0 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|344213041|ref|YP_004797361.1| - 0.055 13.9 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein Rad17 PF03215.10 gi|344213041|ref|YP_004797361.1| - 0.057 12.0 0.0 0.084 11.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein TAF PF02969.12 gi|344213041|ref|YP_004797361.1| - 0.075 12.9 0.0 0.23 11.4 0.0 1.8 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) MobB PF03205.9 gi|344213041|ref|YP_004797361.1| - 0.12 12.0 0.1 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|344213041|ref|YP_004797361.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|344213041|ref|YP_004797361.1| - 0.14 12.3 0.0 0.98 9.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase NB-ARC PF00931.17 gi|344213041|ref|YP_004797361.1| - 0.17 10.7 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|344213041|ref|YP_004797361.1| - 0.17 12.1 0.0 0.24 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain Prenyltrans_1 PF13243.1 gi|344213042|ref|YP_004797362.1| - 0.0091 15.9 1.0 0.9 9.5 0.3 3.0 1 1 2 3 3 3 2 Prenyltransferase-like Regulator_TrmB PF11495.3 gi|344213043|ref|YP_004797363.1| - 6.9e-69 231.3 0.1 9.7e-69 230.9 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|344213043|ref|YP_004797363.1| - 7.6e-15 54.3 0.0 1.3e-14 53.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344213043|ref|YP_004797363.1| - 0.00044 19.8 0.0 0.0014 18.2 0.0 1.9 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|344213043|ref|YP_004797363.1| - 0.013 15.1 0.0 0.029 14.0 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|344213043|ref|YP_004797363.1| - 0.014 15.5 0.0 0.036 14.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.1 gi|344213043|ref|YP_004797363.1| - 0.025 13.9 0.0 0.054 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344213043|ref|YP_004797363.1| - 0.034 13.7 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|344213043|ref|YP_004797363.1| - 0.095 12.3 0.3 0.46 10.1 0.0 2.2 2 0 0 2 2 2 0 HTH domain DUF2223 PF09985.4 gi|344213043|ref|YP_004797363.1| - 0.12 11.6 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2223) DUF1628 PF07790.6 gi|344213044|ref|YP_004797364.1| - 2.6e-17 63.3 0.8 5.6e-17 62.2 0.2 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) GST_N_2 PF13409.1 gi|344213045|ref|YP_004797365.1| - 7.3e-21 73.9 0.2 1.2e-19 70.0 0.0 2.3 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|344213045|ref|YP_004797365.1| - 2.3e-14 53.0 0.4 4.5e-14 52.1 0.3 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|344213045|ref|YP_004797365.1| - 1.6e-08 34.9 0.0 3.2e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|344213045|ref|YP_004797365.1| - 1.6e-08 34.4 0.1 5.3e-08 32.7 0.0 1.8 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|344213045|ref|YP_004797365.1| - 3.1e-06 27.2 0.1 0.00014 21.9 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Ribosomal_L16 PF00252.13 gi|344213046|ref|YP_004797366.1| - 4e-29 101.0 0.3 4.6e-29 100.8 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF1062 PF06353.7 gi|344213046|ref|YP_004797366.1| - 0.12 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1062) Usp PF00582.21 gi|344213048|ref|YP_004797368.1| - 7.9e-36 123.3 1.4 9.2e-36 123.1 1.0 1.1 1 0 0 1 1 1 1 Universal stress protein family SRP54 PF00448.17 gi|344213048|ref|YP_004797368.1| - 0.0088 15.5 0.5 0.3 10.5 0.2 2.0 1 1 1 2 2 2 1 SRP54-type protein, GTPase domain CobN-Mg_chel PF02514.11 gi|344213048|ref|YP_004797368.1| - 0.012 13.1 0.0 0.012 13.1 0.0 1.1 1 0 0 1 1 1 0 CobN/Magnesium Chelatase AIRC PF00731.15 gi|344213048|ref|YP_004797368.1| - 0.062 12.5 0.3 0.093 11.9 0.1 1.4 1 1 0 1 1 1 0 AIR carboxylase DUF2452 PF10504.4 gi|344213048|ref|YP_004797368.1| - 0.13 11.5 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2452) RimK PF08443.6 gi|344213049|ref|YP_004797369.1| - 1.8e-26 92.7 0.0 2.5e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|344213049|ref|YP_004797369.1| - 3.2e-15 56.3 0.2 4.6e-15 55.8 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|344213049|ref|YP_004797369.1| - 2.7e-10 39.6 0.0 3.7e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|344213049|ref|YP_004797369.1| - 7.3e-08 32.4 0.0 1.1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|344213049|ref|YP_004797369.1| - 2.9e-05 23.5 0.0 0.00016 21.1 0.0 1.9 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|344213049|ref|YP_004797369.1| - 5.5e-05 22.0 0.0 9.7e-05 21.2 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_ST PF14397.1 gi|344213049|ref|YP_004797369.1| - 6.3e-05 22.2 0.0 0.003 16.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.17 gi|344213049|ref|YP_004797369.1| - 0.0015 17.9 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain TTL PF03133.10 gi|344213049|ref|YP_004797369.1| - 0.0041 16.0 0.0 0.06 12.2 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family CPSase_L_D2 PF02786.12 gi|344213049|ref|YP_004797369.1| - 0.053 12.8 0.0 0.067 12.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain HSP20 PF00011.16 gi|344213050|ref|YP_004797370.1| - 8.4e-11 41.6 0.1 2.4e-09 36.9 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|344213050|ref|YP_004797370.1| - 1e-06 28.5 1.8 1.2e-06 28.2 1.3 1.1 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|344213050|ref|YP_004797370.1| - 0.028 13.8 0.0 0.034 13.5 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 DUF3184 PF11380.3 gi|344213050|ref|YP_004797370.1| - 0.13 10.2 0.0 0.14 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3184) Gp_dh_C PF02800.15 gi|344213051|ref|YP_004797371.1| - 2.9e-59 199.0 0.0 3.9e-59 198.5 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|344213051|ref|YP_004797371.1| - 1.2e-47 161.6 0.0 1.9e-47 161.0 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|344213051|ref|YP_004797371.1| - 0.01 15.7 0.1 0.031 14.2 0.1 1.9 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.21 gi|344213051|ref|YP_004797371.1| - 0.098 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PGK PF00162.14 gi|344213052|ref|YP_004797372.1| - 6.4e-108 360.7 0.1 7.5e-108 360.5 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Lum_binding PF00677.12 gi|344213054|ref|YP_004797374.1| - 9.8e-38 127.9 0.0 2.9e-20 71.9 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|344213055|ref|YP_004797375.1| - 1.7e-41 141.5 15.4 1.7e-41 141.5 10.7 1.7 2 0 0 2 2 2 1 Protease prsW family PepSY_TM_2 PF13703.1 gi|344213055|ref|YP_004797375.1| - 3.7 7.7 9.1 14 5.9 0.0 3.3 3 0 0 3 3 3 0 PepSY-associated TM helix YbgT_YccB PF08173.6 gi|344213055|ref|YP_004797375.1| - 9.1 6.1 6.9 0.64 9.8 0.3 2.6 2 0 0 2 2 2 0 Membrane bound YbgT-like protein SNO PF01174.14 gi|344213056|ref|YP_004797376.1| - 5.2e-52 176.2 0.0 5.7e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|344213056|ref|YP_004797376.1| - 5.4e-09 35.8 0.0 1.5e-08 34.3 0.0 1.7 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|344213056|ref|YP_004797376.1| - 3.3e-05 23.4 0.0 4.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|344213056|ref|YP_004797376.1| - 0.00021 21.0 0.0 0.00028 20.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|344213056|ref|YP_004797376.1| - 0.0027 17.1 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family Aconitase PF00330.15 gi|344213056|ref|YP_004797376.1| - 0.0083 14.6 0.0 0.01 14.3 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF4066 PF13278.1 gi|344213056|ref|YP_004797376.1| - 0.047 12.9 0.1 0.074 12.3 0.1 1.3 1 0 0 1 1 1 0 Putative amidotransferase PRA-PH PF01503.12 gi|344213057|ref|YP_004797377.1| - 1.4e-14 54.1 2.0 1.5e-14 53.9 1.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|344213057|ref|YP_004797377.1| - 0.00036 20.4 2.6 0.00036 20.4 1.8 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain Response_reg PF00072.19 gi|344213058|ref|YP_004797378.1| - 1.5e-21 76.4 0.9 8.6e-21 74.0 0.0 2.8 2 1 1 3 3 3 1 Response regulator receiver domain HATPase_c PF02518.21 gi|344213058|ref|YP_004797378.1| - 2.2e-19 69.1 1.7 1.3e-17 63.5 0.1 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344213058|ref|YP_004797378.1| - 4.1e-12 45.9 0.6 4.1e-12 45.9 0.4 3.9 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|344213058|ref|YP_004797378.1| - 5.3e-09 36.2 0.4 1.4e-08 34.8 0.1 1.9 2 0 0 2 2 1 1 GAF domain PAS PF00989.19 gi|344213058|ref|YP_004797378.1| - 5.2e-08 32.6 0.0 2e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|344213058|ref|YP_004797378.1| - 2.9e-07 31.0 1.6 8.6e-07 29.5 1.1 1.9 1 0 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.1 gi|344213058|ref|YP_004797378.1| - 7.1e-07 28.9 0.4 0.00025 20.6 0.0 2.4 2 0 0 2 2 2 2 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|344213058|ref|YP_004797378.1| - 1.9e-06 28.1 0.0 9.9e-06 25.8 0.0 2.3 3 0 0 3 3 1 1 PAS domain PAS_8 PF13188.1 gi|344213058|ref|YP_004797378.1| - 9.5e-06 25.3 0.0 7.3e-05 22.4 0.0 2.6 3 0 0 3 3 2 1 PAS domain OKR_DC_1_N PF03709.10 gi|344213058|ref|YP_004797378.1| - 1.5e-05 24.9 1.2 6.4e-05 22.9 0.0 2.6 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_4 PF08448.5 gi|344213058|ref|YP_004797378.1| - 0.0041 17.1 1.0 0.034 14.1 0.0 3.0 3 0 0 3 3 3 1 PAS fold FleQ PF06490.6 gi|344213058|ref|YP_004797378.1| - 0.07 13.2 0.0 0.27 11.4 0.0 2.0 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ DUF3846 PF12957.2 gi|344213058|ref|YP_004797378.1| - 0.13 11.9 2.5 2.2 8.0 0.1 3.5 3 2 0 3 3 3 0 Domain of unknown function (DUF3846) DUF4350 PF14258.1 gi|344213058|ref|YP_004797378.1| - 0.16 12.1 4.9 1.5 9.0 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) HATPase_c_5 PF14501.1 gi|344213058|ref|YP_004797378.1| - 0.18 11.5 0.1 1.8 8.3 0.0 2.7 2 1 0 2 2 2 0 GHKL domain B12-binding PF02310.14 gi|344213058|ref|YP_004797378.1| - 0.5 10.2 4.3 17 5.3 0.0 4.0 4 0 0 4 4 4 0 B12 binding domain ASCH PF04266.9 gi|344213060|ref|YP_004797380.1| - 0.006 16.9 0.1 0.011 16.0 0.0 1.4 2 0 0 2 2 2 1 ASCH domain NOG1 PF06858.9 gi|344213061|ref|YP_004797381.1| - 5.6e-19 67.7 0.0 9.8e-19 66.9 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|344213061|ref|YP_004797381.1| - 1.2e-18 67.1 0.0 2.2e-18 66.3 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|344213061|ref|YP_004797381.1| - 6.5e-11 41.7 0.0 1.1e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|344213061|ref|YP_004797381.1| - 5.6e-06 26.8 0.0 9e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|344213061|ref|YP_004797381.1| - 1.3e-05 25.0 0.2 0.51 10.1 0.0 3.1 2 1 1 3 3 3 2 Dynamin family Ras PF00071.17 gi|344213061|ref|YP_004797381.1| - 0.0097 15.3 0.0 0.038 13.3 0.0 2.0 1 1 0 1 1 1 1 Ras family AAA_16 PF13191.1 gi|344213061|ref|YP_004797381.1| - 0.019 14.9 0.0 0.071 13.0 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AIG1 PF04548.11 gi|344213061|ref|YP_004797381.1| - 0.024 13.7 0.0 0.043 12.9 0.0 1.5 1 0 0 1 1 1 0 AIG1 family DUF258 PF03193.11 gi|344213061|ref|YP_004797381.1| - 0.031 13.4 0.0 0.13 11.4 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 SIMPL PF04402.9 gi|344213062|ref|YP_004797382.1| - 1.1e-38 133.2 17.1 1.3e-38 132.9 11.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF4330 PF14221.1 gi|344213062|ref|YP_004797382.1| - 0.038 13.8 2.2 0.054 13.3 0.2 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4330) DUF2690 PF10901.3 gi|344213062|ref|YP_004797382.1| - 0.078 12.9 4.2 0.23 11.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2690) Rotamase_2 PF13145.1 gi|344213062|ref|YP_004797382.1| - 0.086 13.4 3.9 8 7.1 2.7 2.2 1 1 0 1 1 1 0 PPIC-type PPIASE domain DUF389 PF04087.9 gi|344213063|ref|YP_004797383.1| - 7.8e-37 126.3 19.0 7.8e-37 126.3 13.2 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF1700 PF08006.6 gi|344213063|ref|YP_004797383.1| - 0.03 13.6 0.0 0.03 13.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) DUF4131 PF13567.1 gi|344213063|ref|YP_004797383.1| - 2 7.8 6.1 0.45 9.9 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) MMR_HSR1 PF01926.18 gi|344213064|ref|YP_004797384.1| - 5.3e-16 58.6 0.0 8.9e-16 57.8 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|344213064|ref|YP_004797384.1| - 1.2e-12 47.3 0.1 1.8e-11 43.5 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|344213064|ref|YP_004797384.1| - 9.5e-08 31.6 0.0 4.4e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain MobB PF03205.9 gi|344213064|ref|YP_004797384.1| - 0.001 18.7 0.0 0.0054 16.4 0.0 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AIG1 PF04548.11 gi|344213064|ref|YP_004797384.1| - 0.0011 18.0 0.0 0.0023 17.0 0.0 1.5 1 1 1 2 2 2 1 AIG1 family AAA_18 PF13238.1 gi|344213064|ref|YP_004797384.1| - 0.0017 18.7 0.0 0.0024 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344213064|ref|YP_004797384.1| - 0.0072 15.5 0.1 0.016 14.4 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Ras PF00071.17 gi|344213064|ref|YP_004797384.1| - 0.0082 15.5 0.0 0.022 14.1 0.0 1.7 2 0 0 2 2 2 1 Ras family AAA_10 PF12846.2 gi|344213064|ref|YP_004797384.1| - 0.0097 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|344213064|ref|YP_004797384.1| - 0.013 14.3 0.1 3 6.5 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Dynamin_N PF00350.18 gi|344213064|ref|YP_004797384.1| - 0.013 15.3 0.1 0.088 12.6 0.0 1.9 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.4 gi|344213064|ref|YP_004797384.1| - 0.018 14.5 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|344213064|ref|YP_004797384.1| - 0.019 15.2 0.0 0.025 14.8 0.0 1.6 1 1 0 1 1 1 0 ABC transporter TIP49 PF06068.8 gi|344213064|ref|YP_004797384.1| - 0.019 13.7 0.3 0.031 13.0 0.2 1.3 1 0 0 1 1 1 0 TIP49 C-terminus Miro PF08477.8 gi|344213064|ref|YP_004797384.1| - 0.021 15.3 0.0 0.034 14.6 0.0 1.6 1 1 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|344213064|ref|YP_004797384.1| - 0.03 15.1 0.0 0.077 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|344213064|ref|YP_004797384.1| - 0.035 13.6 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|344213064|ref|YP_004797384.1| - 0.068 13.3 0.0 0.63 10.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|344213064|ref|YP_004797384.1| - 0.09 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase RNA_helicase PF00910.17 gi|344213064|ref|YP_004797384.1| - 0.16 12.1 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Phage_integrase PF00589.17 gi|344213065|ref|YP_004797385.1| - 5.3e-09 35.9 0.0 2.7e-08 33.6 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|344213065|ref|YP_004797385.1| - 2.1e-05 24.5 4.2 2.5e-05 24.3 0.4 2.7 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|344213065|ref|YP_004797385.1| - 0.074 13.3 0.0 0.24 11.7 0.0 1.8 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain HTH_20 PF12840.2 gi|344213066|ref|YP_004797386.1| - 1.6e-05 24.6 0.0 4e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.1 gi|344213066|ref|YP_004797386.1| - 2.5e-05 24.2 0.0 0.00013 22.0 0.0 1.8 1 1 1 2 2 2 1 Mrr N-terminal domain HTH_27 PF13463.1 gi|344213066|ref|YP_004797386.1| - 4e-05 23.8 0.1 5.1e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|344213066|ref|YP_004797386.1| - 0.0015 18.3 0.0 0.0025 17.5 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DUF2161 PF09929.4 gi|344213066|ref|YP_004797386.1| - 0.0031 17.4 0.0 0.0037 17.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2161) DUF4095 PF13338.1 gi|344213066|ref|YP_004797386.1| - 0.0078 16.3 0.0 0.01 16.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4095) HemN_C PF06969.11 gi|344213066|ref|YP_004797386.1| - 0.0097 15.9 0.2 0.015 15.3 0.0 1.5 2 0 0 2 2 2 1 HemN C-terminal domain Ribosomal_S19e PF01090.14 gi|344213066|ref|YP_004797386.1| - 0.024 14.0 0.0 0.026 13.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_24 PF13412.1 gi|344213066|ref|YP_004797386.1| - 0.026 13.9 0.1 0.13 11.6 0.1 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pentapeptide PF00805.17 gi|344213068|ref|YP_004797388.1| - 2.6e-26 90.3 20.8 3e-08 32.6 0.7 5.4 1 1 3 6 6 6 6 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|344213068|ref|YP_004797388.1| - 3.6e-26 90.7 15.3 3.2e-13 49.2 3.9 3.3 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.1 gi|344213068|ref|YP_004797388.1| - 8.8e-19 67.1 21.3 7.4e-06 25.7 2.7 5.4 1 1 4 5 5 5 5 Pentapeptide repeats (9 copies) CfAFP PF05264.6 gi|344213068|ref|YP_004797388.1| - 0.017 14.9 0.3 0.19 11.5 0.1 2.4 1 1 2 3 3 3 0 Choristoneura fumiferana antifreeze protein (CfAFP) OxoDH_E1alpha_N PF12573.3 gi|344213068|ref|YP_004797388.1| - 0.43 10.1 1.4 19 4.9 0.0 3.5 4 0 0 4 4 4 0 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal AAA_22 PF13401.1 gi|344213069|ref|YP_004797389.1| - 1.1e-09 38.4 0.0 3.6e-09 36.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|344213069|ref|YP_004797389.1| - 4e-09 36.7 4.9 4.7e-08 33.2 3.4 2.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|344213069|ref|YP_004797389.1| - 1.5e-06 28.4 0.0 5.7e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344213069|ref|YP_004797389.1| - 0.00061 19.5 0.1 0.036 13.7 0.0 2.7 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|344213069|ref|YP_004797389.1| - 0.0014 18.5 0.6 0.02 14.7 0.4 2.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|344213069|ref|YP_004797389.1| - 0.0034 17.2 0.0 0.012 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|344213069|ref|YP_004797389.1| - 0.0047 15.9 0.3 0.11 11.5 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Arch_ATPase PF01637.13 gi|344213069|ref|YP_004797389.1| - 0.0077 15.9 0.0 0.029 14.0 0.0 2.0 2 1 0 2 2 2 1 Archaeal ATPase NACHT PF05729.7 gi|344213069|ref|YP_004797389.1| - 0.0078 15.8 0.0 0.014 15.0 0.0 1.5 1 1 0 1 1 1 1 NACHT domain MMR_HSR1 PF01926.18 gi|344213069|ref|YP_004797389.1| - 0.0089 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|344213069|ref|YP_004797389.1| - 0.011 16.0 0.3 0.085 13.1 0.2 2.4 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|344213069|ref|YP_004797389.1| - 0.012 15.0 0.1 1.4 8.3 0.0 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|344213069|ref|YP_004797389.1| - 0.016 14.9 0.3 0.05 13.3 0.2 1.9 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|344213069|ref|YP_004797389.1| - 0.02 14.0 0.1 0.041 13.0 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.8 gi|344213069|ref|YP_004797389.1| - 0.05 12.5 0.0 0.093 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) GvpD PF07088.6 gi|344213069|ref|YP_004797389.1| - 0.056 11.7 0.4 0.14 10.4 0.0 1.7 2 0 0 2 2 2 0 GvpD gas vesicle protein RNA_helicase PF00910.17 gi|344213069|ref|YP_004797389.1| - 0.059 13.5 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.10 gi|344213069|ref|YP_004797389.1| - 0.1 12.3 0.9 0.46 10.1 0.1 2.4 3 0 0 3 3 3 0 NTPase AAA_17 PF13207.1 gi|344213069|ref|YP_004797389.1| - 0.13 13.0 3.8 0.23 12.3 0.1 2.7 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|344213069|ref|YP_004797389.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|344213069|ref|YP_004797389.1| - 0.15 10.9 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.9 gi|344213069|ref|YP_004797389.1| - 0.16 11.6 0.1 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RHH_1 PF01402.16 gi|344213073|ref|YP_004797393.1| - 0.00041 20.1 0.0 0.00077 19.2 0.0 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF4140 PF13600.1 gi|344213078|ref|YP_004797398.1| - 0.11 12.9 2.2 0.41 11.1 0.3 2.6 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) AAA_10 PF12846.2 gi|344213081|ref|YP_004797401.1| - 0.022 14.2 0.0 0.056 12.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain DUF2893 PF11459.3 gi|344213083|ref|YP_004797403.1| - 0.00066 19.4 0.5 0.00078 19.1 0.3 1.1 1 0 0 1 1 1 1 Protein of unknwon function (DUF2893) DUF1323 PF07037.6 gi|344213083|ref|YP_004797403.1| - 0.11 12.6 0.5 0.14 12.3 0.4 1.1 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) AAA_22 PF13401.1 gi|344213083|ref|YP_004797403.1| - 0.2 11.8 0.7 0.21 11.7 0.5 1.1 1 0 0 1 1 1 0 AAA domain FYVE_2 PF02318.11 gi|344213083|ref|YP_004797403.1| - 0.4 10.5 2.4 0.42 10.5 1.6 1.2 1 0 0 1 1 1 0 FYVE-type zinc finger MarR_2 PF12802.2 gi|344213084|ref|YP_004797404.1| - 0.005 16.4 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_15 PF12324.3 gi|344213084|ref|YP_004797404.1| - 0.016 14.8 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase Phasin_2 PF09361.5 gi|344213084|ref|YP_004797404.1| - 0.066 13.2 0.4 0.12 12.4 0.3 1.3 1 0 0 1 1 1 0 Phasin protein Mis14 PF08641.7 gi|344213084|ref|YP_004797404.1| - 0.072 13.1 0.5 0.19 11.7 0.4 1.7 1 0 0 1 1 1 0 Kinetochore protein Mis14 like Sigma70_r4_2 PF08281.7 gi|344213085|ref|YP_004797405.1| - 3.1e-06 26.5 0.0 3.5e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|344213085|ref|YP_004797405.1| - 0.0019 17.6 0.0 0.0037 16.7 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.14 gi|344213085|ref|YP_004797405.1| - 0.032 13.5 0.0 0.05 12.9 0.0 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family DZR PF12773.2 gi|344213086|ref|YP_004797406.1| - 0.071 12.9 3.2 0.13 12.1 2.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF164 PF02591.10 gi|344213086|ref|YP_004797406.1| - 0.14 12.0 1.8 0.26 11.1 1.3 1.4 1 0 0 1 1 1 0 Putative zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|344213086|ref|YP_004797406.1| - 0.28 10.7 2.9 1.5 8.4 2.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.1 gi|344213086|ref|YP_004797406.1| - 0.63 10.0 2.5 12 5.8 1.7 2.1 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.1 gi|344213086|ref|YP_004797406.1| - 3.7 6.8 7.4 29 4.0 4.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344213086|ref|YP_004797406.1| - 4.1 7.2 7.7 3.5 7.5 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_S10 PF00338.17 gi|344213087|ref|YP_004797407.1| - 5.1e-29 99.9 0.0 5.6e-29 99.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|344213088|ref|YP_004797408.1| - 3.2e-58 196.2 0.0 4.3e-58 195.8 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|344213088|ref|YP_004797408.1| - 1e-30 105.8 0.1 3.8e-30 103.9 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|344213088|ref|YP_004797408.1| - 9.7e-18 64.0 2.7 2.4e-17 62.8 0.7 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|344213088|ref|YP_004797408.1| - 3.6e-07 30.1 0.0 7.1e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|344213088|ref|YP_004797408.1| - 8.6e-06 26.2 0.1 0.0005 20.5 0.0 2.9 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|344213088|ref|YP_004797408.1| - 8.9e-05 22.0 0.1 0.00032 20.2 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|344213088|ref|YP_004797408.1| - 0.0043 16.8 0.1 2.4 7.9 0.0 2.4 1 1 1 2 2 2 2 Dynamin family Gtr1_RagA PF04670.7 gi|344213088|ref|YP_004797408.1| - 0.0083 15.2 0.0 0.047 12.8 0.0 1.9 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|344213088|ref|YP_004797408.1| - 0.011 14.9 0.0 0.83 8.8 0.0 2.3 1 1 1 2 2 2 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|344213088|ref|YP_004797408.1| - 0.033 13.4 0.0 0.49 9.6 0.0 2.3 2 1 0 2 2 2 0 Ferrous iron transport protein B CbiA PF01656.18 gi|344213088|ref|YP_004797408.1| - 0.072 12.4 0.1 0.14 11.5 0.1 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Septin PF00735.13 gi|344213088|ref|YP_004797408.1| - 0.14 11.1 0.0 0.3 10.0 0.0 1.4 1 1 0 1 1 1 0 Septin FlpD PF02662.11 gi|344213088|ref|YP_004797408.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit Homoserine_dh PF00742.14 gi|344213089|ref|YP_004797409.1| - 2.3e-50 170.7 0.2 3.3e-50 170.2 0.2 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|344213089|ref|YP_004797409.1| - 1.9e-08 34.1 0.2 4.6e-08 32.9 0.1 1.7 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|344213089|ref|YP_004797409.1| - 4.8e-08 33.4 1.0 9e-08 32.5 0.3 1.8 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|344213089|ref|YP_004797409.1| - 0.00016 21.7 2.8 0.00016 21.7 1.9 2.0 2 1 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|344213089|ref|YP_004797409.1| - 0.0011 18.6 0.1 0.0019 17.8 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|344213089|ref|YP_004797409.1| - 0.0015 19.0 0.1 0.0031 17.9 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|344213089|ref|YP_004797409.1| - 0.0033 17.1 0.0 0.0068 16.1 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|344213089|ref|YP_004797409.1| - 0.0064 16.4 0.1 0.035 14.0 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|344213089|ref|YP_004797409.1| - 0.015 14.7 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|344213089|ref|YP_004797409.1| - 0.035 13.5 0.1 0.058 12.7 0.1 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|344213089|ref|YP_004797409.1| - 0.051 13.9 0.2 0.13 12.6 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|344213089|ref|YP_004797409.1| - 0.055 13.2 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|344213089|ref|YP_004797409.1| - 0.06 12.4 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|344213089|ref|YP_004797409.1| - 0.079 13.2 0.1 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.12 gi|344213089|ref|YP_004797409.1| - 0.082 13.3 0.2 0.31 11.5 0.1 2.1 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_8 PF13450.1 gi|344213089|ref|YP_004797409.1| - 0.088 12.8 0.5 0.22 11.5 0.3 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ACT PF01842.20 gi|344213090|ref|YP_004797410.1| - 0.00048 19.5 1.1 0.072 12.5 0.0 2.9 1 1 2 3 3 3 2 ACT domain Sigma70_r1_1 PF03979.9 gi|344213090|ref|YP_004797410.1| - 0.1 12.5 0.0 0.26 11.2 0.0 1.7 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 Class_IIIsignal PF04021.7 gi|344213091|ref|YP_004797411.1| - 5.1 6.9 8.0 8 6.3 0.9 2.1 2 0 0 2 2 2 0 Class III signal peptide GTP_EFTU PF00009.22 gi|344213093|ref|YP_004797413.1| - 2.8e-61 206.2 0.3 4.8e-61 205.4 0.2 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|344213093|ref|YP_004797413.1| - 2.1e-24 85.3 0.0 5.4e-24 84.0 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|344213093|ref|YP_004797413.1| - 5.7e-23 80.5 0.0 1.1e-21 76.5 0.0 2.9 3 0 0 3 3 3 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|344213093|ref|YP_004797413.1| - 1.1e-21 76.4 2.0 1.2e-21 76.3 0.2 2.0 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|344213093|ref|YP_004797413.1| - 3.6e-16 59.0 1.8 1.2e-15 57.3 0.6 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|344213093|ref|YP_004797413.1| - 1.3e-05 25.1 0.0 3e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|344213093|ref|YP_004797413.1| - 0.063 12.4 0.2 0.18 11.0 0.1 1.7 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|344213093|ref|YP_004797413.1| - 0.13 11.6 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Ras family Cys_Met_Meta_PP PF01053.15 gi|344213094|ref|YP_004797414.1| - 3.9e-141 469.8 0.0 4.4e-141 469.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|344213094|ref|YP_004797414.1| - 3.6e-11 42.7 0.2 5.6e-11 42.0 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|344213094|ref|YP_004797414.1| - 1.2e-05 24.6 0.1 4.9e-05 22.6 0.1 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|344213094|ref|YP_004797414.1| - 3.7e-05 22.8 0.0 5.3e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|344213094|ref|YP_004797414.1| - 0.00017 20.4 0.0 0.00029 19.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|344213094|ref|YP_004797414.1| - 0.032 12.5 0.0 0.21 9.8 0.0 2.1 2 1 0 2 2 2 0 Methionine gamma-lyase PAS_3 PF08447.6 gi|344213096|ref|YP_004797416.1| - 4.1e-50 167.8 2.1 7.1e-14 51.6 0.0 5.4 5 0 0 5 5 5 4 PAS fold PAS_9 PF13426.1 gi|344213096|ref|YP_004797416.1| - 2.3e-45 153.2 7.4 6.2e-17 61.8 0.0 5.8 6 1 1 7 7 6 4 PAS domain PAS_4 PF08448.5 gi|344213096|ref|YP_004797416.1| - 1.7e-40 137.4 12.6 2.5e-17 62.8 0.1 4.9 4 0 0 4 4 4 4 PAS fold Response_reg PF00072.19 gi|344213096|ref|YP_004797416.1| - 1.5e-21 76.4 0.8 1.1e-20 73.7 0.1 2.5 2 0 0 2 2 2 1 Response regulator receiver domain PAS PF00989.19 gi|344213096|ref|YP_004797416.1| - 3.9e-21 74.9 1.9 3.5e-08 33.1 0.0 4.7 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|344213096|ref|YP_004797416.1| - 1.2e-17 63.6 0.3 3.7e-17 62.0 0.2 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|344213096|ref|YP_004797416.1| - 5.1e-10 39.1 1.7 5.1e-10 39.1 1.2 3.2 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|344213096|ref|YP_004797416.1| - 9.1e-08 31.7 1.2 0.00082 19.1 0.0 4.5 4 0 0 4 4 4 2 PAS domain GAF_3 PF13492.1 gi|344213096|ref|YP_004797416.1| - 7.4e-07 29.3 0.0 2.5e-06 27.5 0.0 2.0 1 0 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.10 gi|344213096|ref|YP_004797416.1| - 0.00025 21.0 0.1 0.0019 18.2 0.0 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|344213096|ref|YP_004797416.1| - 0.00099 18.7 0.0 0.0026 17.4 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|344213096|ref|YP_004797416.1| - 0.015 15.2 0.0 1.5 8.8 0.0 3.7 4 0 0 4 4 4 0 PAS domain SieB PF14163.1 gi|344213096|ref|YP_004797416.1| - 0.21 11.1 2.6 0.13 11.8 0.1 1.9 2 0 0 2 2 2 0 Superinfection exclusion protein B PAS_7 PF12860.2 gi|344213096|ref|YP_004797416.1| - 2 8.4 8.2 3.1 7.8 0.0 4.8 6 1 0 6 6 6 0 PAS fold Pup PF05639.6 gi|344213096|ref|YP_004797416.1| - 6.8 7.2 10.3 0.49 10.9 0.1 3.7 4 0 0 4 4 2 0 Pup-like protein CbiQ PF02361.11 gi|344213097|ref|YP_004797417.1| - 6.4e-15 55.3 4.7 1.8e-14 53.8 3.2 1.6 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|344213098|ref|YP_004797418.1| - 2.8e-29 102.1 0.0 3.8e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344213098|ref|YP_004797418.1| - 4.6e-09 36.6 0.0 0.001 19.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344213098|ref|YP_004797418.1| - 1.7e-06 27.4 0.1 3.3e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|344213098|ref|YP_004797418.1| - 3.4e-06 26.4 0.0 1.2e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|344213098|ref|YP_004797418.1| - 4.2e-06 26.8 2.7 2e-05 24.6 1.9 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|344213098|ref|YP_004797418.1| - 1.2e-05 24.9 0.0 0.051 13.0 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain AAA_5 PF07728.9 gi|344213098|ref|YP_004797418.1| - 0.00018 21.2 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|344213098|ref|YP_004797418.1| - 0.00018 21.8 0.0 0.00024 21.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344213098|ref|YP_004797418.1| - 0.00095 19.3 0.0 0.0016 18.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|344213098|ref|YP_004797418.1| - 0.0029 16.1 0.0 0.017 13.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|344213098|ref|YP_004797418.1| - 0.0034 17.2 0.2 0.0069 16.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|344213098|ref|YP_004797418.1| - 0.0039 16.8 0.0 0.0063 16.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_19 PF13245.1 gi|344213098|ref|YP_004797418.1| - 0.0048 16.6 1.3 0.076 12.7 0.1 2.5 2 1 0 2 2 2 1 Part of AAA domain Mg_chelatase PF01078.16 gi|344213098|ref|YP_004797418.1| - 0.0069 15.5 0.0 0.0092 15.1 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|344213098|ref|YP_004797418.1| - 0.0072 15.4 0.0 0.051 12.6 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.1 gi|344213098|ref|YP_004797418.1| - 0.0077 16.5 0.0 1.4 9.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|344213098|ref|YP_004797418.1| - 0.0085 15.9 0.1 0.085 12.7 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF1707 PF08044.6 gi|344213098|ref|YP_004797418.1| - 0.0095 15.6 2.1 0.26 11.0 0.1 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) AAA PF00004.24 gi|344213098|ref|YP_004797418.1| - 0.01 16.0 0.0 0.021 15.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|344213098|ref|YP_004797418.1| - 0.019 14.3 0.4 0.05 12.9 0.3 2.0 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344213098|ref|YP_004797418.1| - 0.025 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|344213098|ref|YP_004797418.1| - 0.032 13.6 0.1 0.063 12.7 0.0 1.5 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|344213098|ref|YP_004797418.1| - 0.032 14.1 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|344213098|ref|YP_004797418.1| - 0.035 13.5 0.1 0.056 12.8 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain KaiC PF06745.8 gi|344213098|ref|YP_004797418.1| - 0.039 13.0 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_15 PF13175.1 gi|344213098|ref|YP_004797418.1| - 0.043 12.8 0.0 2.4 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|344213098|ref|YP_004797418.1| - 0.045 13.6 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|344213098|ref|YP_004797418.1| - 0.048 13.2 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|344213098|ref|YP_004797418.1| - 0.06 12.0 0.0 0.081 11.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_17 PF13207.1 gi|344213098|ref|YP_004797418.1| - 0.061 14.1 0.4 0.16 12.7 0.3 2.0 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|344213098|ref|YP_004797418.1| - 0.074 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|344213098|ref|YP_004797418.1| - 0.082 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|344213098|ref|YP_004797418.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|344213098|ref|YP_004797418.1| - 0.14 10.9 0.2 0.37 9.6 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|344213098|ref|YP_004797418.1| - 0.18 11.5 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase BioY PF02632.9 gi|344213099|ref|YP_004797419.1| - 3.7e-33 114.2 24.9 3.7e-33 114.2 17.2 1.4 2 0 0 2 2 2 1 BioY family BCLP PF12304.3 gi|344213099|ref|YP_004797419.1| - 0.17 11.2 2.1 0.26 10.6 1.4 1.4 1 0 0 1 1 1 0 Beta-casein like protein ECF-ribofla_trS PF07155.7 gi|344213099|ref|YP_004797419.1| - 0.95 9.1 16.5 41 3.8 11.4 2.4 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component GSDH PF07995.6 gi|344213100|ref|YP_004797420.1| - 1.2e-86 290.7 0.2 1.7e-86 290.3 0.1 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.4 gi|344213100|ref|YP_004797420.1| - 0.036 14.0 2.4 0.12 12.4 1.7 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NHL PF01436.16 gi|344213100|ref|YP_004797420.1| - 0.12 12.3 0.0 7.7 6.6 0.0 2.7 2 0 0 2 2 2 0 NHL repeat Ribosomal_S7 PF00177.16 gi|344213101|ref|YP_004797421.1| - 8.1e-39 132.5 1.6 9.9e-39 132.2 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e RE_LlaJI PF09563.5 gi|344213101|ref|YP_004797421.1| - 0.11 11.1 0.1 0.14 10.7 0.0 1.1 1 0 0 1 1 1 0 LlaJI restriction endonuclease Ribosom_S12_S23 PF00164.20 gi|344213102|ref|YP_004797422.1| - 3.9e-41 139.2 0.2 4.5e-41 139.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 MCPsignal PF00015.16 gi|344213103|ref|YP_004797423.1| - 4e-51 173.5 47.7 7.5e-50 169.4 21.3 4.2 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344213103|ref|YP_004797423.1| - 1.9e-14 53.5 6.2 6.3e-11 42.3 0.2 6.8 6 1 1 7 7 6 2 HAMP domain Laminin_II PF06009.7 gi|344213103|ref|YP_004797423.1| - 4.3e-05 23.2 28.7 0.033 13.9 0.6 5.5 2 2 3 5 5 5 3 Laminin Domain II IncA PF04156.9 gi|344213103|ref|YP_004797423.1| - 0.00013 21.6 20.7 0.077 12.5 2.1 5.0 2 1 1 4 4 4 2 IncA protein DUF948 PF06103.6 gi|344213103|ref|YP_004797423.1| - 0.00013 21.7 1.0 0.00013 21.7 0.7 7.1 6 2 1 7 7 7 1 Bacterial protein of unknown function (DUF948) DUF2365 PF10157.4 gi|344213103|ref|YP_004797423.1| - 0.0012 18.8 15.0 0.0013 18.5 0.6 4.4 2 1 0 3 3 3 1 Uncharacterized conserved protein (DUF2365) Hemerythrin PF01814.18 gi|344213103|ref|YP_004797423.1| - 0.046 13.8 16.7 0.24 11.5 0.4 5.0 1 1 2 4 4 4 0 Hemerythrin HHE cation binding domain COG2 PF06148.6 gi|344213103|ref|YP_004797423.1| - 0.12 12.2 21.1 0.23 11.3 0.3 5.9 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 APG17 PF04108.7 gi|344213103|ref|YP_004797423.1| - 0.15 10.8 29.6 0.14 10.8 0.8 4.8 2 1 2 5 5 5 0 Autophagy protein Apg17 BLOC1_2 PF10046.4 gi|344213103|ref|YP_004797423.1| - 0.15 12.2 29.4 0.45 10.6 0.3 6.2 4 2 1 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PhageMin_Tail PF10145.4 gi|344213103|ref|YP_004797423.1| - 0.18 11.4 33.3 0.16 11.6 11.8 3.7 1 1 2 3 3 3 0 Phage-related minor tail protein Seryl_tRNA_N PF02403.17 gi|344213103|ref|YP_004797423.1| - 0.33 10.9 28.3 0.24 11.4 2.3 5.4 2 1 1 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.6 gi|344213103|ref|YP_004797423.1| - 0.48 9.0 20.9 0.52 8.9 0.7 4.1 1 1 3 4 4 4 0 Spc7 kinetochore protein DUF1395 PF07160.7 gi|344213103|ref|YP_004797423.1| - 0.68 9.3 12.6 1.7 8.1 1.0 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1395) Fib_alpha PF08702.5 gi|344213103|ref|YP_004797423.1| - 1 9.4 16.2 2.1 8.4 0.5 4.6 2 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Dor1 PF04124.7 gi|344213103|ref|YP_004797423.1| - 1.1 7.6 14.9 2.3 6.5 0.1 4.3 2 1 2 4 4 4 0 Dor1-like family V_ATPase_I PF01496.14 gi|344213103|ref|YP_004797423.1| - 2.2 6.0 19.1 0.14 9.9 3.3 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Syntaxin PF00804.20 gi|344213103|ref|YP_004797423.1| - 2.7 8.1 31.8 1.3 9.2 1.8 5.8 1 1 4 5 5 5 0 Syntaxin Reo_sigmaC PF04582.7 gi|344213103|ref|YP_004797423.1| - 3.5 6.6 30.7 2.5 7.1 2.9 5.0 2 1 2 5 5 5 0 Reovirus sigma C capsid protein DUF1351 PF07083.6 gi|344213103|ref|YP_004797423.1| - 4.2 6.9 13.8 2 7.9 0.9 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1351) DUF1664 PF07889.7 gi|344213103|ref|YP_004797423.1| - 9 6.1 24.3 3.7 7.3 1.0 5.2 2 2 1 5 5 5 0 Protein of unknown function (DUF1664) KH_2 PF07650.12 gi|344213105|ref|YP_004797425.1| - 1e-15 56.9 0.2 2.1e-09 36.8 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_4 PF13083.1 gi|344213105|ref|YP_004797425.1| - 5e-10 38.8 0.1 6.5e-07 28.9 0.0 2.1 2 0 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|344213105|ref|YP_004797425.1| - 2.5e-09 36.8 0.1 5.8e-08 32.4 0.0 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|344213105|ref|YP_004797425.1| - 4.2e-05 23.1 0.0 0.29 10.8 0.0 2.4 2 0 0 2 2 2 2 KH domain DUF2984 PF11203.3 gi|344213105|ref|YP_004797425.1| - 0.42 10.7 2.2 0.81 9.8 1.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2984) RNA_pol_Rpb1_5 PF04998.12 gi|344213106|ref|YP_004797426.1| - 4.6e-48 163.8 0.1 5.6e-48 163.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1386 PF07138.6 gi|344213106|ref|YP_004797426.1| - 0.025 13.7 0.1 0.039 13.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) DUF4355 PF14265.1 gi|344213106|ref|YP_004797426.1| - 0.043 13.7 2.7 4.5 7.2 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|344213107|ref|YP_004797427.1| - 2.5e-88 296.5 0.0 4e-88 295.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|344213107|ref|YP_004797427.1| - 1.8e-65 219.9 0.2 3.1e-65 219.1 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|344213107|ref|YP_004797427.1| - 3.7e-33 113.5 0.0 8.7e-33 112.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|344213107|ref|YP_004797427.1| - 1.6e-28 99.7 0.0 3.2e-28 98.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|344213107|ref|YP_004797427.1| - 2.2e-25 89.2 0.0 3.8e-25 88.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.17 gi|344213107|ref|YP_004797427.1| - 0.0016 18.2 0.0 0.0044 16.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix RNA_pol_Rpb2_6 PF00562.23 gi|344213108|ref|YP_004797428.1| - 8.2e-122 406.6 0.0 4.1e-121 404.3 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|344213108|ref|YP_004797428.1| - 2.6e-29 101.2 0.2 4.5e-29 100.5 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_5 PF04567.12 gi|344213108|ref|YP_004797428.1| - 1.7e-09 37.4 3.2 4.2e-09 36.2 2.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_4 PF04566.8 gi|344213108|ref|YP_004797428.1| - 2.3e-08 33.7 0.2 4.7e-08 32.7 0.2 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 DZR PF12773.2 gi|344213108|ref|YP_004797428.1| - 0.011 15.5 0.5 0.019 14.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|344213108|ref|YP_004797428.1| - 0.049 13.3 1.3 0.098 12.3 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|344213108|ref|YP_004797428.1| - 0.16 11.7 0.7 0.32 10.7 0.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.6 gi|344213108|ref|YP_004797428.1| - 0.94 9.0 3.1 0.8 9.2 0.9 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_pol_Rpb2_1 PF04563.10 gi|344213109|ref|YP_004797429.1| - 1e-53 181.2 0.0 1.2e-53 181.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|344213109|ref|YP_004797429.1| - 2e-27 95.8 0.1 3.5e-27 95.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|344213109|ref|YP_004797429.1| - 6.5e-23 80.2 0.0 1.3e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|344213110|ref|YP_004797430.1| - 2.2e-24 84.8 1.1 2.5e-24 84.6 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|344213110|ref|YP_004797430.1| - 0.0071 16.0 0.8 0.051 13.3 0.5 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) Spectrin PF00435.16 gi|344213111|ref|YP_004797431.1| - 0.0081 16.4 0.5 0.083 13.1 0.1 2.3 2 0 0 2 2 2 1 Spectrin repeat ATG16 PF08614.6 gi|344213111|ref|YP_004797431.1| - 0.036 13.8 2.1 0.11 12.3 0.2 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) HEPN PF05168.9 gi|344213111|ref|YP_004797431.1| - 0.037 13.8 0.6 0.49 10.3 0.0 2.2 2 0 0 2 2 2 0 HEPN domain GreA_GreB_N PF03449.10 gi|344213111|ref|YP_004797431.1| - 0.1 12.6 1.7 9 6.4 0.1 2.4 2 0 0 2 2 2 0 Transcription elongation factor, N-terminal DUF4140 PF13600.1 gi|344213111|ref|YP_004797431.1| - 0.26 11.7 3.0 0.33 11.4 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) PP-binding_2 PF14573.1 gi|344213111|ref|YP_004797431.1| - 0.28 11.2 3.4 0.65 10.0 0.5 2.6 2 1 0 2 2 2 0 Acyl-carrier DivIC PF04977.10 gi|344213111|ref|YP_004797431.1| - 0.38 10.2 3.8 0.39 10.2 0.6 2.1 2 0 0 2 2 2 0 Septum formation initiator HTH_24 PF13412.1 gi|344213112|ref|YP_004797432.1| - 8.6e-08 31.4 0.0 1.4e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|344213112|ref|YP_004797432.1| - 2.8e-05 23.7 0.0 3.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|344213112|ref|YP_004797432.1| - 0.0019 17.9 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344213112|ref|YP_004797432.1| - 0.0023 17.4 0.0 0.0043 16.5 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|344213112|ref|YP_004797432.1| - 0.0043 16.7 0.0 0.0094 15.5 0.0 1.5 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|344213112|ref|YP_004797432.1| - 0.0045 16.6 0.0 0.0074 15.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|344213112|ref|YP_004797432.1| - 0.0055 16.1 0.0 0.0087 15.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.7 gi|344213112|ref|YP_004797432.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_IclR PF09339.5 gi|344213112|ref|YP_004797432.1| - 0.031 13.8 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Phage_rep_org_N PF09681.5 gi|344213112|ref|YP_004797432.1| - 0.033 13.7 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MerR PF00376.18 gi|344213112|ref|YP_004797432.1| - 0.065 12.8 0.0 0.43 10.1 0.0 2.0 2 0 0 2 2 2 0 MerR family regulatory protein HTH_12 PF08461.5 gi|344213112|ref|YP_004797432.1| - 0.082 12.6 0.3 0.24 11.1 0.1 1.9 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|344213112|ref|YP_004797432.1| - 0.09 12.9 0.0 0.14 12.3 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|344213112|ref|YP_004797432.1| - 0.098 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Metallophos_2 PF12850.2 gi|344213113|ref|YP_004797433.1| - 4.1e-24 85.1 0.1 4.6e-24 85.0 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain F420_ligase PF01996.11 gi|344213114|ref|YP_004797434.1| - 2.5e-68 229.5 0.1 2.9e-68 229.3 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Bac_luciferase PF00296.15 gi|344213115|ref|YP_004797435.1| - 8.4e-59 199.1 13.2 1.1e-58 198.8 9.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Beta_elim_lyase PF01212.16 gi|344213117|ref|YP_004797437.1| - 1.8e-69 234.0 0.0 4.5e-69 232.8 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Methyltransf_11 PF08241.7 gi|344213118|ref|YP_004797438.1| - 1.1e-22 80.3 0.0 1.6e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344213118|ref|YP_004797438.1| - 1.8e-18 66.5 0.0 2.3e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344213118|ref|YP_004797438.1| - 3.4e-14 53.0 0.0 5.4e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344213118|ref|YP_004797438.1| - 4.1e-12 46.1 0.0 5.5e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344213118|ref|YP_004797438.1| - 8.4e-12 45.6 0.0 1.8e-11 44.5 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344213118|ref|YP_004797438.1| - 1.8e-10 41.1 0.0 2.7e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344213118|ref|YP_004797438.1| - 2.3e-10 40.0 0.0 3.1e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|344213118|ref|YP_004797438.1| - 5.3e-07 29.6 0.1 1.1e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|344213118|ref|YP_004797438.1| - 5.9e-05 21.9 0.0 8.2e-05 21.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MetW PF07021.7 gi|344213118|ref|YP_004797438.1| - 0.00012 21.5 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|344213118|ref|YP_004797438.1| - 0.001 18.2 0.0 0.0015 17.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|344213118|ref|YP_004797438.1| - 0.028 13.8 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.14 gi|344213118|ref|YP_004797438.1| - 0.057 12.9 0.0 0.098 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.12 gi|344213118|ref|YP_004797438.1| - 0.067 12.1 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin N6_N4_Mtase PF01555.13 gi|344213118|ref|YP_004797438.1| - 0.084 12.3 0.0 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 DNA methylase DUF2934 PF11154.3 gi|344213118|ref|YP_004797438.1| - 0.089 12.1 1.2 0.19 11.1 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2934) PrmA PF06325.8 gi|344213118|ref|YP_004797438.1| - 0.1 11.6 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RRN7 PF11781.3 gi|344213119|ref|YP_004797439.1| - 0.18 11.3 2.5 0.35 10.3 1.8 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 ZF-HD_dimer PF04770.7 gi|344213119|ref|YP_004797439.1| - 0.26 11.3 3.5 0.12 12.4 0.9 1.6 2 0 0 2 2 2 0 ZF-HD protein dimerisation region AAA_3 PF07726.6 gi|344213120|ref|YP_004797440.1| - 1.5e-61 205.8 0.2 2.7e-61 204.9 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344213120|ref|YP_004797440.1| - 7.5e-14 51.6 0.0 1.3e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|344213120|ref|YP_004797440.1| - 6.6e-08 31.7 0.0 5.8e-06 25.3 0.0 2.2 1 1 1 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|344213120|ref|YP_004797440.1| - 2e-06 28.0 0.0 6.1e-06 26.4 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|344213120|ref|YP_004797440.1| - 4e-06 26.1 0.2 0.00014 21.1 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|344213120|ref|YP_004797440.1| - 8.3e-06 25.3 0.0 0.003 17.0 0.0 2.2 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|344213120|ref|YP_004797440.1| - 0.00025 20.1 0.0 0.0017 17.4 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|344213120|ref|YP_004797440.1| - 0.012 15.7 0.0 0.044 13.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF58 PF01882.13 gi|344213121|ref|YP_004797441.1| - 1.2e-17 63.7 0.7 2.8e-17 62.6 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 Germane PF10646.4 gi|344213121|ref|YP_004797441.1| - 0.043 13.9 0.4 0.14 12.3 0.1 2.0 2 0 0 2 2 2 0 Sporulation and spore germination Transglut_core PF01841.14 gi|344213122|ref|YP_004797442.1| - 6.3e-26 90.8 0.1 2.2e-25 89.0 0.0 2.0 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|344213122|ref|YP_004797442.1| - 1e-05 25.2 0.1 5.9e-05 22.8 0.0 2.3 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|344213122|ref|YP_004797442.1| - 0.0025 17.7 9.6 0.0025 17.7 6.7 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) SUI1 PF01253.17 gi|344213123|ref|YP_004797443.1| - 5e-25 87.1 0.0 5.7e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|344213123|ref|YP_004797443.1| - 0.018 15.2 0.0 0.023 14.8 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|344213123|ref|YP_004797443.1| - 0.071 12.3 0.6 0.085 12.0 0.4 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|344213123|ref|YP_004797443.1| - 0.11 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) CARDB PF07705.6 gi|344213124|ref|YP_004797444.1| - 3.8e-08 33.3 3.6 0.00046 20.1 0.3 3.2 2 0 0 2 2 2 2 CARDB Peptidase_MA_2 PF13485.1 gi|344213124|ref|YP_004797444.1| - 1.1e-06 28.7 1.7 2.4e-06 27.6 1.2 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily PhnJ PF06007.6 gi|344213124|ref|YP_004797444.1| - 0.00047 19.0 0.1 0.03 13.1 0.1 2.4 2 0 0 2 2 2 2 Phosphonate metabolism protein PhnJ PKD PF00801.15 gi|344213124|ref|YP_004797444.1| - 0.0039 16.9 0.6 0.0039 16.9 0.4 4.9 3 2 0 3 3 3 1 PKD domain EamA PF00892.15 gi|344213125|ref|YP_004797445.1| - 1.4e-15 57.3 25.2 2.4e-09 37.3 7.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|344213125|ref|YP_004797445.1| - 0.26 11.4 28.8 0.49 10.5 6.0 3.4 2 2 0 2 2 2 0 Multidrug resistance efflux transporter Phos_pyr_kin PF08543.7 gi|344213127|ref|YP_004797447.1| - 8.1e-83 277.3 5.9 1.3e-82 276.7 4.1 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|344213127|ref|YP_004797447.1| - 2e-41 141.1 0.1 3.9e-41 140.2 0.1 1.5 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|344213127|ref|YP_004797447.1| - 3.3e-09 36.3 2.7 4.7e-09 35.7 1.9 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DSBA PF01323.15 gi|344213128|ref|YP_004797448.1| - 2.4e-36 125.1 0.0 2.8e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|344213128|ref|YP_004797448.1| - 1.3e-08 35.0 0.0 1.4e-06 28.3 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|344213128|ref|YP_004797448.1| - 4.4e-07 30.0 0.1 8e-06 26.0 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_5 PF13743.1 gi|344213128|ref|YP_004797448.1| - 0.08 12.5 0.0 0.73 9.3 0.0 2.2 3 0 0 3 3 3 0 Thioredoxin 2-Hacid_dh_C PF02826.14 gi|344213129|ref|YP_004797449.1| - 2.8e-53 179.7 0.0 4.3e-53 179.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|344213129|ref|YP_004797449.1| - 5.7e-07 29.0 0.1 7.8e-07 28.6 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|344213129|ref|YP_004797449.1| - 7.5e-05 23.0 0.1 0.00016 22.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|344213129|ref|YP_004797449.1| - 0.0001 22.1 0.1 0.00019 21.3 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|344213129|ref|YP_004797449.1| - 0.0081 16.1 0.2 0.017 15.1 0.2 1.5 1 0 0 1 1 1 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|344213129|ref|YP_004797449.1| - 0.013 15.3 0.5 0.043 13.6 0.1 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|344213129|ref|YP_004797449.1| - 0.022 14.7 0.1 0.05 13.6 0.1 1.7 1 1 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|344213129|ref|YP_004797449.1| - 0.03 13.9 0.7 0.06 13.0 0.5 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|344213129|ref|YP_004797449.1| - 0.17 12.3 1.0 0.46 10.9 0.4 2.1 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain TauE PF01925.14 gi|344213131|ref|YP_004797451.1| - 1.4e-31 109.8 20.2 1.4e-31 109.8 14.0 1.6 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE Usp PF00582.21 gi|344213132|ref|YP_004797452.1| - 1.2e-31 109.8 0.5 1.4e-31 109.5 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.8 gi|344213133|ref|YP_004797453.1| - 2.5e-06 27.3 9.5 4e-06 26.6 6.6 1.3 1 0 0 1 1 1 1 HPP family GPDPase_memb PF10110.4 gi|344213134|ref|YP_004797454.1| - 5.2e-06 25.9 0.7 5.2e-06 25.9 0.5 2.0 2 0 0 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.6 gi|344213134|ref|YP_004797454.1| - 0.00025 20.8 3.7 0.00025 20.8 2.5 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF975) UPF0259 PF06790.6 gi|344213134|ref|YP_004797454.1| - 0.0033 16.9 2.0 0.0033 16.9 1.4 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0259) NfeD PF01957.13 gi|344213134|ref|YP_004797454.1| - 0.024 14.7 0.1 0.024 14.7 0.1 3.0 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding Thioredoxin PF00085.15 gi|344213135|ref|YP_004797455.1| - 1.6e-10 40.6 0.0 2e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|344213135|ref|YP_004797455.1| - 7.8e-06 26.0 0.0 0.00042 20.4 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|344213135|ref|YP_004797455.1| - 0.00073 19.3 0.1 0.0018 18.0 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin domain Disulph_isomer PF06491.6 gi|344213135|ref|YP_004797455.1| - 0.036 13.9 0.2 0.056 13.2 0.1 1.4 1 1 0 1 1 1 0 Disulphide isomerase HyaE PF07449.6 gi|344213135|ref|YP_004797455.1| - 0.12 12.2 0.2 1 9.3 0.2 2.0 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Mac PF12464.3 gi|344213136|ref|YP_004797456.1| - 1.3e-23 82.7 0.1 1.3e-22 79.5 0.0 2.0 2 0 0 2 2 2 1 Maltose acetyltransferase Hexapep PF00132.19 gi|344213136|ref|YP_004797456.1| - 2.7e-13 48.7 16.4 5.8e-11 41.3 3.7 3.8 4 1 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|344213136|ref|YP_004797456.1| - 1.5e-12 46.8 19.5 5.6e-11 41.7 2.7 4.2 5 0 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase DUF460 PF04312.8 gi|344213137|ref|YP_004797457.1| - 6.6e-49 164.9 1.2 1.4e-48 163.9 0.3 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DUF4200 PF13863.1 gi|344213137|ref|YP_004797457.1| - 0.0078 16.1 2.8 0.0078 16.1 1.9 3.2 2 1 1 3 3 3 1 Domain of unknown function (DUF4200) ATG16 PF08614.6 gi|344213137|ref|YP_004797457.1| - 0.014 15.2 9.1 0.014 15.2 6.3 2.8 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.1 gi|344213137|ref|YP_004797457.1| - 0.016 13.7 6.7 0.024 13.1 4.6 1.2 1 0 0 1 1 1 0 AAA domain ADIP PF11559.3 gi|344213137|ref|YP_004797457.1| - 0.075 12.9 19.6 0.03 14.2 7.4 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding COG5 PF10392.4 gi|344213137|ref|YP_004797457.1| - 0.18 11.7 4.1 0.22 11.4 2.0 1.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 GAS PF13851.1 gi|344213137|ref|YP_004797457.1| - 0.37 9.9 15.8 0.86 8.7 10.9 1.6 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|344213137|ref|YP_004797457.1| - 0.41 10.4 7.4 1.7 8.3 5.0 2.2 2 0 0 2 2 2 0 Laminin Domain II V_ATPase_I PF01496.14 gi|344213137|ref|YP_004797457.1| - 0.57 7.9 10.0 1.1 7.0 6.9 1.4 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.7 gi|344213137|ref|YP_004797457.1| - 0.61 10.4 9.3 97 3.4 6.4 3.0 1 1 0 1 1 1 0 SlyX FUSC PF04632.7 gi|344213137|ref|YP_004797457.1| - 0.7 8.2 2.6 1.5 7.1 1.8 1.6 1 0 0 1 1 1 0 Fusaric acid resistance protein family LMBR1 PF04791.11 gi|344213137|ref|YP_004797457.1| - 0.94 7.9 3.8 1.3 7.5 2.6 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF342 PF03961.8 gi|344213137|ref|YP_004797457.1| - 1 7.7 7.9 1.6 7.0 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) IncA PF04156.9 gi|344213137|ref|YP_004797457.1| - 1 8.9 21.5 4.9 6.6 5.9 2.4 1 1 1 2 2 2 0 IncA protein TMF_DNA_bd PF12329.3 gi|344213137|ref|YP_004797457.1| - 1 9.2 23.0 0.064 13.0 1.0 3.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Atg14 PF10186.4 gi|344213137|ref|YP_004797457.1| - 2.1 7.2 19.3 4.9 6.0 13.2 1.7 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 BLOC1_2 PF10046.4 gi|344213137|ref|YP_004797457.1| - 2.2 8.4 9.0 6.7 6.9 1.2 3.0 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vac_Fusion PF02346.11 gi|344213137|ref|YP_004797457.1| - 3.4 7.1 8.8 0.21 11.0 0.7 2.4 2 0 0 2 2 2 0 Chordopoxvirus fusion protein DUF904 PF06005.7 gi|344213137|ref|YP_004797457.1| - 7 7.0 16.5 1.6 9.0 2.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF904) AKNA PF12443.3 gi|344213137|ref|YP_004797457.1| - 10 6.2 9.2 2.3 8.2 1.6 2.4 1 1 1 2 2 2 0 AT-hook-containing transcription factor HATPase_c PF02518.21 gi|344213138|ref|YP_004797458.1| - 9.7e-19 67.1 0.0 5.8e-18 64.6 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344213138|ref|YP_004797458.1| - 8.1e-17 61.2 0.4 2e-16 59.9 0.3 1.7 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|344213138|ref|YP_004797458.1| - 2.7e-13 49.6 0.0 8.3e-13 48.1 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|344213138|ref|YP_004797458.1| - 1.1e-12 48.2 0.0 2e-12 47.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|344213138|ref|YP_004797458.1| - 3.1e-12 46.3 2.0 6.3e-12 45.3 1.4 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.6 gi|344213138|ref|YP_004797458.1| - 1.1e-05 25.4 0.0 3.1e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 PAS fold PAS_7 PF12860.2 gi|344213138|ref|YP_004797458.1| - 4.1e-05 23.5 0.2 0.00015 21.7 0.1 2.0 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|344213138|ref|YP_004797458.1| - 0.0011 18.7 0.1 0.0045 16.7 0.1 2.0 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.1 gi|344213138|ref|YP_004797458.1| - 0.0012 18.4 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_5 PF07310.8 gi|344213138|ref|YP_004797458.1| - 0.014 14.9 0.2 0.11 12.0 0.0 2.3 2 1 0 2 2 2 0 PAS domain HTH_Tnp_Mu_1 PF02316.11 gi|344213138|ref|YP_004797458.1| - 0.087 12.5 0.1 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 Mu DNA-binding domain DUF4418 PF14387.1 gi|344213139|ref|YP_004797459.1| - 0.62 9.8 6.0 0.71 9.6 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) SCP2 PF02036.12 gi|344213140|ref|YP_004797460.1| - 5.1e-11 42.7 0.0 6.4e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|344213140|ref|YP_004797460.1| - 0.023 14.6 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Alkyl sulfatase C-terminal ABC_tran PF00005.22 gi|344213141|ref|YP_004797461.1| - 1.3e-30 106.4 0.0 1.9e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344213141|ref|YP_004797461.1| - 1.3e-12 48.3 0.0 2.4e-05 24.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344213141|ref|YP_004797461.1| - 2.3e-05 24.4 0.1 0.00013 22.0 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|344213141|ref|YP_004797461.1| - 0.00056 19.1 0.0 0.032 13.4 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|344213141|ref|YP_004797461.1| - 0.0016 17.6 0.0 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|344213141|ref|YP_004797461.1| - 0.0016 18.8 0.0 0.0018 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344213141|ref|YP_004797461.1| - 0.0019 17.7 0.1 0.0034 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|344213141|ref|YP_004797461.1| - 0.0026 17.8 0.1 0.012 15.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344213141|ref|YP_004797461.1| - 0.0042 17.2 0.1 0.57 10.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|344213141|ref|YP_004797461.1| - 0.011 14.7 0.0 0.21 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|344213141|ref|YP_004797461.1| - 0.017 14.5 0.4 0.026 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|344213141|ref|YP_004797461.1| - 0.019 14.5 0.1 0.053 13.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|344213141|ref|YP_004797461.1| - 0.063 12.9 0.0 0.15 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|344213141|ref|YP_004797461.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|344213141|ref|YP_004797461.1| - 0.076 12.4 0.0 0.74 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain MutS_V PF00488.16 gi|344213141|ref|YP_004797461.1| - 0.13 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 MutS domain V ABC_tran PF00005.22 gi|344213142|ref|YP_004797462.1| - 1.1e-30 106.6 0.0 1.5e-30 106.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344213142|ref|YP_004797462.1| - 5.5e-13 49.5 0.1 2.6e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|344213142|ref|YP_004797462.1| - 3.3e-09 36.2 0.2 6.9e-09 35.1 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.14 gi|344213142|ref|YP_004797462.1| - 0.00014 21.2 0.3 0.0026 17.0 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344213142|ref|YP_004797462.1| - 0.00021 20.7 0.2 0.00047 19.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|344213142|ref|YP_004797462.1| - 0.00072 19.9 0.2 0.00072 19.9 0.1 1.5 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|344213142|ref|YP_004797462.1| - 0.011 14.8 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344213142|ref|YP_004797462.1| - 0.024 14.6 0.0 0.047 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.4 gi|344213142|ref|YP_004797462.1| - 0.046 12.3 0.3 3.3 6.1 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|344213142|ref|YP_004797462.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|344213142|ref|YP_004797462.1| - 0.076 11.7 0.1 0.15 10.7 0.1 1.4 1 0 0 1 1 1 0 ArgK protein AAA_30 PF13604.1 gi|344213142|ref|YP_004797462.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.11 gi|344213143|ref|YP_004797463.1| - 2.5e-45 154.5 35.0 2.5e-45 154.5 24.3 1.9 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|344213143|ref|YP_004797463.1| - 0.03 13.8 0.1 0.066 12.7 0.0 1.5 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 DUF3481 PF11980.3 gi|344213143|ref|YP_004797463.1| - 6.5 6.6 6.3 5.3 6.9 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3481) BPD_transp_2 PF02653.11 gi|344213144|ref|YP_004797464.1| - 1.1e-45 155.7 39.0 1.2e-45 155.5 27.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Trp_oprn_chp PF09534.5 gi|344213144|ref|YP_004797464.1| - 0.11 12.0 17.1 0.023 14.2 2.0 2.6 3 0 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Peripla_BP_6 PF13458.1 gi|344213145|ref|YP_004797465.1| - 1e-42 146.7 6.7 1.5e-42 146.1 4.6 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|344213145|ref|YP_004797465.1| - 8.2e-25 87.3 0.1 1.1e-24 86.9 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|344213145|ref|YP_004797465.1| - 1.1e-09 37.5 2.6 3.8e-06 25.9 0.2 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain TAT_signal PF10518.4 gi|344213145|ref|YP_004797465.1| - 0.006 16.4 1.5 0.015 15.2 1.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Pro_racemase PF05544.6 gi|344213146|ref|YP_004797466.1| - 3.5e-75 252.8 3.2 4.4e-75 252.5 2.2 1.0 1 0 0 1 1 1 1 Proline racemase DAP_epimerase PF01678.14 gi|344213146|ref|YP_004797466.1| - 2.9e-07 30.4 2.0 2.3e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 Diaminopimelate epimerase PhzC-PhzF PF02567.11 gi|344213146|ref|YP_004797466.1| - 0.00018 20.8 0.0 0.00032 20.0 0.0 1.5 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein PG_binding_4 PF12229.3 gi|344213146|ref|YP_004797466.1| - 0.051 13.8 0.0 0.093 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative peptidoglycan binding domain Pro_dh PF01619.13 gi|344213147|ref|YP_004797467.1| - 5e-36 124.2 0.0 1.1e-35 123.1 0.0 1.5 1 1 0 1 1 1 1 Proline dehydrogenase HTH_10 PF04967.7 gi|344213148|ref|YP_004797468.1| - 3.1e-16 58.6 0.1 4.8e-16 58.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|344213148|ref|YP_004797468.1| - 0.00019 20.7 1.1 0.00024 20.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|344213148|ref|YP_004797468.1| - 0.00072 18.9 2.3 0.011 15.2 1.6 2.3 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|344213148|ref|YP_004797468.1| - 0.0064 16.0 0.1 0.012 15.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|344213148|ref|YP_004797468.1| - 0.0076 15.7 0.0 0.015 14.7 0.0 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_11 PF08279.7 gi|344213148|ref|YP_004797468.1| - 0.0086 15.7 0.0 0.023 14.3 0.0 1.7 1 0 0 1 1 1 1 HTH domain TetR_N PF00440.18 gi|344213148|ref|YP_004797468.1| - 0.013 15.1 0.0 0.063 12.9 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Phage_antitermQ PF06530.7 gi|344213148|ref|YP_004797468.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q HTH_23 PF13384.1 gi|344213148|ref|YP_004797468.1| - 0.024 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain GntR PF00392.16 gi|344213148|ref|YP_004797468.1| - 0.04 13.3 0.1 0.087 12.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|344213148|ref|YP_004797468.1| - 0.054 13.2 0.1 0.17 11.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|344213148|ref|YP_004797468.1| - 0.062 12.9 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344213148|ref|YP_004797468.1| - 0.077 12.6 0.0 0.26 10.9 0.0 1.9 2 0 0 2 2 1 0 MarR family HTH_17 PF12728.2 gi|344213148|ref|YP_004797468.1| - 0.11 12.7 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344213148|ref|YP_004797468.1| - 0.14 11.7 0.1 0.14 11.7 0.1 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_40 PF14493.1 gi|344213148|ref|YP_004797468.1| - 0.14 12.3 0.0 1.3 9.2 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Aldedh PF00171.17 gi|344213149|ref|YP_004797469.1| - 2.1e-143 478.0 0.0 2.4e-143 477.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|344213149|ref|YP_004797469.1| - 0.028 13.1 0.0 0.055 12.1 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) eIF-1a PF01176.14 gi|344213150|ref|YP_004797470.1| - 3.2e-28 96.9 1.1 4e-28 96.6 0.8 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|344213151|ref|YP_004797471.1| - 2.1e-60 203.3 0.2 4.3e-60 202.3 0.0 1.5 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|344213151|ref|YP_004797471.1| - 4.7e-08 33.0 0.5 4.6e-06 26.5 0.1 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|344213151|ref|YP_004797471.1| - 1.3e-05 24.4 0.0 7.9e-05 21.8 0.0 2.0 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|344213151|ref|YP_004797471.1| - 9.8e-05 21.6 0.1 0.00032 19.9 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|344213151|ref|YP_004797471.1| - 0.059 12.5 0.0 0.095 11.9 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) HATPase_c PF02518.21 gi|344213152|ref|YP_004797472.1| - 8.5e-18 64.1 0.1 1.7e-17 63.1 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|344213152|ref|YP_004797472.1| - 9.1e-14 51.6 0.0 1.9e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 PAS domain HisKA PF00512.20 gi|344213152|ref|YP_004797472.1| - 7.3e-11 41.9 0.7 4e-10 39.5 0.5 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|344213152|ref|YP_004797472.1| - 5.5e-08 32.8 0.1 1.1e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|344213152|ref|YP_004797472.1| - 1.5e-06 27.9 0.0 2.9e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 PAS fold 7TMR-HDED PF07697.6 gi|344213152|ref|YP_004797472.1| - 0.012 15.3 0.1 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 7TM-HD extracellular AAA_27 PF13514.1 gi|344213152|ref|YP_004797472.1| - 0.059 11.0 0.0 0.077 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain PMC2NT PF08066.7 gi|344213152|ref|YP_004797472.1| - 0.061 13.6 0.2 1 9.7 0.0 2.8 3 0 0 3 3 3 0 PMC2NT (NUC016) domain KH_1 PF00013.24 gi|344213153|ref|YP_004797473.1| - 8.7e-18 63.7 3.8 8.1e-10 38.1 0.3 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|344213153|ref|YP_004797473.1| - 9.8e-09 34.6 3.4 5.7e-05 22.6 0.2 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|344213153|ref|YP_004797473.1| - 1.8e-05 24.1 4.0 0.0021 17.5 0.1 2.6 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|344213153|ref|YP_004797473.1| - 0.061 12.9 4.3 4.7 6.9 0.0 3.2 2 1 1 3 3 3 0 KH domain 4HBT PF03061.17 gi|344213154|ref|YP_004797474.1| - 2.6e-17 62.6 0.1 3.9e-17 62.1 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|344213154|ref|YP_004797474.1| - 3.4e-05 24.2 0.0 4e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|344213154|ref|YP_004797474.1| - 0.06 12.2 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Acyl-ACP thioesterase DUF4191 PF13829.1 gi|344213155|ref|YP_004797475.1| - 0.2 10.7 0.4 0.22 10.6 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF983 PF06170.7 gi|344213155|ref|YP_004797475.1| - 0.31 11.1 2.2 0.39 10.8 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF983) FUSC PF04632.7 gi|344213155|ref|YP_004797475.1| - 0.88 7.9 6.7 1.1 7.6 4.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family IncA PF04156.9 gi|344213155|ref|YP_004797475.1| - 4.7 6.7 13.2 5.7 6.4 9.1 1.1 1 0 0 1 1 1 0 IncA protein E1-E2_ATPase PF00122.15 gi|344213155|ref|YP_004797475.1| - 4.9 6.1 5.5 6.4 5.7 3.8 1.1 1 0 0 1 1 1 0 E1-E2 ATPase SUR7 PF06687.7 gi|344213155|ref|YP_004797475.1| - 8.2 5.9 7.9 11 5.5 5.5 1.1 1 0 0 1 1 1 0 SUR7/PalI family ECH PF00378.15 gi|344213159|ref|YP_004797479.1| - 2.7e-42 144.5 0.8 3.3e-42 144.3 0.5 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family DUF3105 PF11303.3 gi|344213160|ref|YP_004797480.1| - 7.3e-31 106.7 0.1 9.3e-31 106.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) zf-HC2 PF13490.1 gi|344213160|ref|YP_004797480.1| - 0.053 13.4 1.0 0.053 13.4 0.7 2.1 3 0 0 3 3 3 0 Putative zinc-finger DUF3437 PF11919.3 gi|344213160|ref|YP_004797480.1| - 0.074 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3437) NAD_synthase PF02540.12 gi|344213161|ref|YP_004797481.1| - 4.5e-77 258.2 0.0 5.6e-77 257.9 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|344213161|ref|YP_004797481.1| - 1.5e-05 23.7 0.0 0.022 13.3 0.0 2.6 3 0 0 3 3 3 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|344213161|ref|YP_004797481.1| - 0.00023 20.7 0.1 0.00061 19.3 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|344213161|ref|YP_004797481.1| - 0.055 12.7 0.0 0.35 10.1 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DNA_pol3_delta2 PF13177.1 gi|344213162|ref|YP_004797482.1| - 2e-13 50.3 0.0 2.8e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|344213162|ref|YP_004797482.1| - 2.1e-12 46.8 0.0 4.8e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|344213162|ref|YP_004797482.1| - 9.3e-10 38.8 0.0 2.9e-09 37.2 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|344213162|ref|YP_004797482.1| - 5.3e-08 33.0 0.2 2.1e-06 27.8 0.0 3.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344213162|ref|YP_004797482.1| - 3.8e-07 30.2 0.0 1.2e-06 28.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|344213162|ref|YP_004797482.1| - 5.2e-05 23.1 0.0 0.00018 21.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|344213162|ref|YP_004797482.1| - 0.00012 21.6 0.1 0.0039 16.6 0.0 2.7 3 0 0 3 3 3 1 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|344213162|ref|YP_004797482.1| - 0.00042 19.8 0.0 0.00099 18.6 0.0 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family TIP49 PF06068.8 gi|344213162|ref|YP_004797482.1| - 0.0006 18.6 0.0 0.014 14.1 0.0 2.6 3 0 0 3 3 3 1 TIP49 C-terminus T2SE PF00437.15 gi|344213162|ref|YP_004797482.1| - 0.00077 18.4 0.0 0.002 17.0 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|344213162|ref|YP_004797482.1| - 0.0034 17.1 0.0 0.05 13.3 0.0 2.7 3 0 0 3 3 3 1 Part of AAA domain NACHT PF05729.7 gi|344213162|ref|YP_004797482.1| - 0.0073 15.9 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain Arch_ATPase PF01637.13 gi|344213162|ref|YP_004797482.1| - 0.0096 15.6 0.0 0.021 14.5 0.0 1.6 1 1 1 2 2 2 1 Archaeal ATPase Mg_chelatase PF01078.16 gi|344213162|ref|YP_004797482.1| - 0.011 14.9 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Tnp_P_element_C PF12596.3 gi|344213162|ref|YP_004797482.1| - 0.013 15.7 0.3 0.043 14.1 0.0 2.0 1 1 1 2 2 2 0 87kDa Transposase Rad17 PF03215.10 gi|344213162|ref|YP_004797482.1| - 0.031 12.9 0.0 1.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Sigma54_activ_2 PF14532.1 gi|344213162|ref|YP_004797482.1| - 0.042 13.9 0.1 0.17 11.9 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|344213162|ref|YP_004797482.1| - 0.043 14.6 0.0 0.16 12.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain DEAD PF00270.24 gi|344213162|ref|YP_004797482.1| - 0.054 12.9 0.0 0.8 9.1 0.0 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_24 PF13479.1 gi|344213162|ref|YP_004797482.1| - 0.059 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain B12-binding_2 PF02607.12 gi|344213162|ref|YP_004797482.1| - 0.065 13.2 0.7 0.38 10.8 0.2 2.3 2 0 0 2 2 2 0 B12 binding domain OSCP PF00213.13 gi|344213162|ref|YP_004797482.1| - 0.085 12.7 0.4 0.4 10.5 0.0 2.1 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit RNA_helicase PF00910.17 gi|344213162|ref|YP_004797482.1| - 0.15 12.2 0.0 0.38 10.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Ribosomal_S24e PF01282.14 gi|344213163|ref|YP_004797483.1| - 3.3e-30 103.7 0.7 3.9e-30 103.4 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e PDEase_I_N PF08499.7 gi|344213163|ref|YP_004797483.1| - 0.065 13.1 0.1 0.48 10.3 0.1 2.0 1 1 1 2 2 2 0 3'5'-cyclic nucleotide phosphodiesterase N-terminal Ribosomal_S27 PF01599.14 gi|344213164|ref|YP_004797484.1| - 1.8e-16 59.6 3.4 2e-16 59.5 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27a DZR PF12773.2 gi|344213164|ref|YP_004797484.1| - 0.0019 17.9 0.9 0.0024 17.6 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|344213164|ref|YP_004797484.1| - 0.0029 17.3 0.7 0.0035 17.1 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e RNHCP PF12647.2 gi|344213164|ref|YP_004797484.1| - 0.015 15.1 0.9 0.017 14.8 0.6 1.2 1 0 0 1 1 1 0 RNHCP domain OrfB_Zn_ribbon PF07282.6 gi|344213164|ref|YP_004797484.1| - 0.017 14.7 2.7 0.023 14.3 1.9 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|344213164|ref|YP_004797484.1| - 0.017 14.5 2.8 0.022 14.2 2.0 1.1 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|344213164|ref|YP_004797484.1| - 0.018 14.7 1.3 0.03 14.0 0.9 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit FYVE PF01363.16 gi|344213164|ref|YP_004797484.1| - 0.02 14.7 0.5 0.023 14.5 0.3 1.1 1 0 0 1 1 1 0 FYVE zinc finger IBR PF01485.16 gi|344213164|ref|YP_004797484.1| - 0.022 14.5 0.8 0.024 14.4 0.5 1.1 1 0 0 1 1 1 0 IBR domain Prok-RING_1 PF14446.1 gi|344213164|ref|YP_004797484.1| - 0.03 14.0 1.2 0.038 13.7 0.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 NCD3G PF07562.9 gi|344213164|ref|YP_004797484.1| - 0.044 13.4 1.2 0.047 13.4 0.8 1.3 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zinc-ribbons_6 PF07191.7 gi|344213164|ref|YP_004797484.1| - 0.049 13.4 1.4 0.06 13.1 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.14 gi|344213164|ref|YP_004797484.1| - 0.051 13.2 1.8 0.056 13.1 1.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GFA PF04828.9 gi|344213164|ref|YP_004797484.1| - 0.053 13.4 1.6 0.17 11.8 0.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2082 PF09855.4 gi|344213164|ref|YP_004797484.1| - 0.082 12.7 2.5 2.6 7.9 0.3 2.3 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|344213164|ref|YP_004797484.1| - 0.083 12.1 5.7 0.28 10.4 4.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|344213164|ref|YP_004797484.1| - 0.086 12.5 7.6 2.6 7.8 4.8 2.1 1 1 1 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|344213164|ref|YP_004797484.1| - 0.13 11.7 3.8 0.77 9.2 1.2 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|344213164|ref|YP_004797484.1| - 0.15 11.5 5.8 5.5 6.5 4.0 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_3 PF13878.1 gi|344213164|ref|YP_004797484.1| - 0.16 11.5 1.1 10 5.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.7 gi|344213164|ref|YP_004797484.1| - 0.32 10.3 4.1 0.63 9.3 2.8 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|344213164|ref|YP_004797484.1| - 0.33 10.7 5.1 1.2 8.9 3.7 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.2 gi|344213164|ref|YP_004797484.1| - 0.43 10.4 5.3 2.1 8.2 3.8 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|344213164|ref|YP_004797484.1| - 0.44 10.0 3.2 1.7 8.2 0.0 2.4 3 0 0 3 3 2 0 Domain of unknown function (DUF1936) UPF0547 PF10571.4 gi|344213164|ref|YP_004797484.1| - 0.45 10.2 5.3 1.2 8.8 3.7 1.7 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 NOB1_Zn_bind PF08772.6 gi|344213164|ref|YP_004797484.1| - 0.54 10.1 3.8 5.7 6.8 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_2 PF13240.1 gi|344213164|ref|YP_004797484.1| - 1.2 8.7 8.2 2.1 7.9 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|344213164|ref|YP_004797484.1| - 1.8 8.6 4.6 0.89 9.6 0.4 2.0 1 1 1 2 2 2 0 zinc-finger FeS PF04060.8 gi|344213164|ref|YP_004797484.1| - 2.6 7.6 4.7 0.75 9.4 0.5 1.9 2 0 0 2 2 2 0 Putative Fe-S cluster zf-C4_Topoisom PF01396.14 gi|344213164|ref|YP_004797484.1| - 2.7 7.5 5.2 1 8.9 0.2 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Fer4_6 PF12837.2 gi|344213164|ref|YP_004797484.1| - 3.2 7.7 4.8 8.7 6.4 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Zn-ribbon_8 PF09723.5 gi|344213164|ref|YP_004797484.1| - 3.5 7.6 7.8 3.6 7.6 1.0 2.3 1 1 1 2 2 2 0 Zinc ribbon domain YhfH PF14149.1 gi|344213164|ref|YP_004797484.1| - 4.3 7.2 5.9 24 4.8 3.8 2.0 1 1 1 2 2 2 0 YhfH-like protein zf-ISL3 PF14690.1 gi|344213164|ref|YP_004797484.1| - 8.8 6.4 7.8 2.5e+02 1.8 5.4 2.1 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Peptidase_M22 PF00814.20 gi|344213165|ref|YP_004797485.1| - 5.1e-70 236.0 0.0 8e-70 235.3 0.0 1.3 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|344213165|ref|YP_004797485.1| - 0.00012 21.2 0.0 0.00031 19.8 0.0 1.7 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Ham1p_like PF01725.11 gi|344213167|ref|YP_004797487.1| - 7.8e-47 159.0 0.0 4.8e-46 156.5 0.0 1.8 1 1 0 1 1 1 1 Ham1 family adh_short PF00106.20 gi|344213168|ref|YP_004797488.1| - 4.6e-34 117.7 0.8 7.6e-34 117.0 0.6 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|344213168|ref|YP_004797488.1| - 7e-16 58.4 0.1 9.8e-16 57.9 0.1 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|344213168|ref|YP_004797488.1| - 7.7e-13 48.7 0.0 9.9e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|344213168|ref|YP_004797488.1| - 2e-08 34.4 1.2 7.1e-06 26.1 0.5 2.3 2 1 0 2 2 2 1 NADH(P)-binding HEM4 PF02602.10 gi|344213168|ref|YP_004797488.1| - 2e-05 23.9 1.3 0.021 14.1 0.1 2.1 2 0 0 2 2 2 2 Uroporphyrinogen-III synthase HemD Glyco_trans_4_4 PF13579.1 gi|344213168|ref|YP_004797488.1| - 6.7e-05 23.0 7.4 0.0071 16.4 0.3 2.9 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|344213168|ref|YP_004797488.1| - 0.00045 19.9 0.1 0.077 12.7 0.0 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 F420_oxidored PF03807.12 gi|344213168|ref|YP_004797488.1| - 0.0011 19.3 1.4 0.0023 18.3 0.1 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Glyco_transf_28 PF03033.15 gi|344213168|ref|YP_004797488.1| - 0.0014 18.4 0.7 0.063 13.0 0.1 2.3 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Saccharop_dh PF03435.13 gi|344213168|ref|YP_004797488.1| - 0.0014 17.6 0.3 0.0021 17.0 0.2 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|344213168|ref|YP_004797488.1| - 0.0015 17.8 0.4 0.0056 15.9 0.1 1.9 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|344213168|ref|YP_004797488.1| - 0.0022 17.9 0.1 0.053 13.5 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain 3HCDH_N PF02737.13 gi|344213168|ref|YP_004797488.1| - 0.0028 17.3 0.1 0.0054 16.4 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.10 gi|344213168|ref|YP_004797488.1| - 0.014 14.9 1.3 0.26 10.8 0.1 2.4 2 1 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein Epimerase PF01370.16 gi|344213168|ref|YP_004797488.1| - 0.02 14.3 0.2 0.028 13.8 0.1 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|344213168|ref|YP_004797488.1| - 0.065 12.1 0.0 0.091 11.6 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein ADH_zinc_N PF00107.21 gi|344213168|ref|YP_004797488.1| - 0.065 12.7 0.9 2 8.0 0.1 2.7 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|344213168|ref|YP_004797488.1| - 0.069 13.2 0.1 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|344213168|ref|YP_004797488.1| - 0.072 12.5 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Eno-Rase_NADH_b PF12242.3 gi|344213168|ref|YP_004797488.1| - 0.095 12.5 0.3 0.2 11.4 0.2 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Glyco_trans_4_2 PF13477.1 gi|344213168|ref|YP_004797488.1| - 0.16 11.7 0.0 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like SseC PF04888.7 gi|344213168|ref|YP_004797488.1| - 0.2 10.9 1.7 10 5.3 0.3 2.1 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family AAA_19 PF13245.1 gi|344213168|ref|YP_004797488.1| - 0.47 10.2 7.8 0.075 12.7 1.1 2.5 2 0 0 2 2 2 0 Part of AAA domain Keratin PF02422.11 gi|344213168|ref|YP_004797488.1| - 1.4 8.9 4.0 1.8 8.5 0.1 2.6 2 1 1 3 3 3 0 Keratin MCPsignal PF00015.16 gi|344213169|ref|YP_004797489.1| - 8.1e-52 175.8 59.1 6.1e-47 159.9 26.2 3.3 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|344213169|ref|YP_004797489.1| - 2.5e-08 33.9 0.2 2.5e-08 33.9 0.2 6.6 3 3 3 6 6 6 1 HAMP domain AAA_13 PF13166.1 gi|344213169|ref|YP_004797489.1| - 0.00066 18.2 26.1 0.0026 16.3 4.8 2.3 1 1 1 2 2 2 2 AAA domain TMCO5 PF14992.1 gi|344213169|ref|YP_004797489.1| - 0.0008 18.6 6.0 0.0008 18.6 4.2 3.0 2 1 1 3 3 3 1 TMCO5 family Laminin_II PF06009.7 gi|344213169|ref|YP_004797489.1| - 0.0017 18.0 42.6 0.11 12.2 5.2 6.0 2 2 4 6 6 6 3 Laminin Domain II IncA PF04156.9 gi|344213169|ref|YP_004797489.1| - 0.0034 17.0 37.5 0.073 12.6 3.6 5.0 1 1 2 4 4 4 1 IncA protein DUF948 PF06103.6 gi|344213169|ref|YP_004797489.1| - 0.0059 16.4 42.3 0.048 13.5 1.0 6.9 5 2 3 8 8 6 3 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|344213169|ref|YP_004797489.1| - 0.0075 14.9 24.0 0.14 10.7 3.4 3.2 2 1 2 4 4 4 3 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|344213169|ref|YP_004797489.1| - 0.011 15.7 25.8 0.49 10.4 0.9 5.7 2 2 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain H-kinase_dim PF02895.9 gi|344213169|ref|YP_004797489.1| - 0.011 16.0 27.7 0.082 13.2 0.1 6.0 4 2 0 5 5 5 0 Signal transducing histidine kinase, homodimeric domain TPR_MLP1_2 PF07926.7 gi|344213169|ref|YP_004797489.1| - 0.024 14.3 30.0 0.023 14.4 2.9 5.1 2 1 3 5 5 5 0 TPR/MLP1/MLP2-like protein Syntaxin_2 PF14523.1 gi|344213169|ref|YP_004797489.1| - 0.065 13.2 9.3 0.8 9.7 0.0 4.5 3 2 2 5 5 4 0 Syntaxin-like protein Laminin_I PF06008.9 gi|344213169|ref|YP_004797489.1| - 0.077 12.2 33.6 0.35 10.1 2.3 4.9 2 2 2 5 5 5 0 Laminin Domain I DUF1664 PF07889.7 gi|344213169|ref|YP_004797489.1| - 0.096 12.4 33.4 0.081 12.7 1.4 5.4 3 1 2 6 6 6 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|344213169|ref|YP_004797489.1| - 0.13 12.1 27.8 0.88 9.4 0.4 5.7 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|344213169|ref|YP_004797489.1| - 0.14 10.0 21.0 1 7.0 11.8 2.5 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family MutS_III PF05192.13 gi|344213169|ref|YP_004797489.1| - 0.15 11.8 18.0 89 2.7 12.5 3.0 1 1 0 1 1 1 0 MutS domain III HSBP1 PF06825.7 gi|344213169|ref|YP_004797489.1| - 0.16 11.5 3.0 0.7 9.5 1.0 3.1 1 1 1 2 2 1 0 Heat shock factor binding protein 1 Syntaxin PF00804.20 gi|344213169|ref|YP_004797489.1| - 0.16 12.1 26.3 1.7 8.8 3.1 4.8 2 1 2 4 4 4 0 Syntaxin APG6 PF04111.7 gi|344213169|ref|YP_004797489.1| - 0.18 10.8 23.0 0.15 11.0 5.6 3.2 2 1 2 4 4 4 0 Autophagy protein Apg6 Prominin PF05478.6 gi|344213169|ref|YP_004797489.1| - 0.25 8.8 23.7 0.75 7.2 2.8 2.6 1 1 2 3 3 3 0 Prominin DUF869 PF05911.6 gi|344213169|ref|YP_004797489.1| - 0.25 9.5 30.0 0.055 11.7 13.8 2.2 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) WXG100 PF06013.7 gi|344213169|ref|YP_004797489.1| - 0.26 11.3 35.8 0.89 9.6 4.2 7.3 2 1 6 8 8 8 0 Proteins of 100 residues with WXG BLOC1_2 PF10046.4 gi|344213169|ref|YP_004797489.1| - 0.35 11.0 30.4 1.3 9.2 1.4 5.8 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cauli_AT PF03233.8 gi|344213169|ref|YP_004797489.1| - 0.6 9.8 14.2 1.1 8.9 0.1 4.4 3 2 2 5 5 5 0 Aphid transmission protein GAS PF13851.1 gi|344213169|ref|YP_004797489.1| - 0.61 9.2 12.8 0.78 8.8 3.1 3.4 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding CorA PF01544.13 gi|344213169|ref|YP_004797489.1| - 0.69 8.8 20.0 0.052 12.5 2.8 3.3 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Fib_alpha PF08702.5 gi|344213169|ref|YP_004797489.1| - 0.79 9.8 23.4 1.2 9.2 0.4 4.9 2 2 2 5 5 5 0 Fibrinogen alpha/beta chain family ApoO PF09769.4 gi|344213169|ref|YP_004797489.1| - 0.85 9.3 9.3 0.41 10.3 0.1 3.6 3 1 1 4 4 4 0 Apolipoprotein O IFT57 PF10498.4 gi|344213169|ref|YP_004797489.1| - 1 8.0 23.8 0.32 9.6 5.9 3.8 1 1 2 4 4 4 0 Intra-flagellar transport protein 57 Phage_GPO PF05929.6 gi|344213169|ref|YP_004797489.1| - 1.1 8.4 42.1 0.68 9.1 6.6 4.3 1 1 2 4 4 4 0 Phage capsid scaffolding protein (GPO) serine peptidase Vip3A_N PF12495.3 gi|344213169|ref|YP_004797489.1| - 1.2 8.7 5.2 1.3 8.6 0.2 3.0 2 1 2 4 4 3 0 Vegetative insecticide protein 3A N terminal Gag_p24 PF00607.15 gi|344213169|ref|YP_004797489.1| - 1.5 8.3 8.1 0.2 11.1 1.4 2.3 2 0 0 2 2 2 0 gag gene protein p24 (core nucleocapsid protein) APG17 PF04108.7 gi|344213169|ref|YP_004797489.1| - 1.7 7.3 26.5 3.1 6.4 1.8 4.1 1 1 2 3 3 3 0 Autophagy protein Apg17 Mod_r PF07200.8 gi|344213169|ref|YP_004797489.1| - 2 8.3 19.8 4.7 7.1 0.3 4.8 1 1 0 4 4 4 0 Modifier of rudimentary (Mod(r)) protein NPV_P10 PF05531.7 gi|344213169|ref|YP_004797489.1| - 2.8 8.2 40.9 2.7 8.3 1.6 6.6 4 3 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Atg14 PF10186.4 gi|344213169|ref|YP_004797489.1| - 2.9 6.7 11.3 2.1 7.2 0.5 3.2 1 1 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 AKNA PF12443.3 gi|344213169|ref|YP_004797489.1| - 3.2 7.8 7.1 1.4 8.9 0.7 3.2 3 2 1 4 4 3 0 AT-hook-containing transcription factor LOH1CR12 PF10158.4 gi|344213169|ref|YP_004797489.1| - 3.3 7.5 14.9 2.5 7.8 0.7 4.2 3 2 2 5 5 4 0 Tumour suppressor protein Macoilin PF09726.4 gi|344213169|ref|YP_004797489.1| - 3.5 5.8 18.1 2.2e+02 -0.2 12.5 2.1 1 1 0 1 1 1 0 Transmembrane protein CENP-F_leu_zip PF10473.4 gi|344213169|ref|YP_004797489.1| - 4.3 7.1 26.9 16 5.3 1.1 4.4 3 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4200 PF13863.1 gi|344213169|ref|YP_004797489.1| - 7.7 6.4 20.9 0.75 9.7 1.2 4.7 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) Ferritin PF00210.19 gi|344213169|ref|YP_004797489.1| - 8.8 6.0 17.5 0.14 11.8 2.0 3.4 1 1 3 4 4 4 0 Ferritin-like domain PIN_3 PF13470.1 gi|344213170|ref|YP_004797490.1| - 2.1e-05 25.1 2.0 5.3e-05 23.8 1.4 1.6 1 1 0 1 1 1 1 PIN domain zf-HC2 PF13490.1 gi|344213170|ref|YP_004797490.1| - 2.2 8.3 5.3 16 5.5 0.7 2.5 2 0 0 2 2 2 0 Putative zinc-finger TrkA_N PF02254.13 gi|344213172|ref|YP_004797492.1| - 3.4e-25 88.2 0.2 4.7e-25 87.8 0.2 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|344213172|ref|YP_004797492.1| - 2.5e-14 52.6 0.1 4.9e-14 51.6 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|344213172|ref|YP_004797492.1| - 2.1e-06 27.2 0.1 4e-06 26.3 0.1 1.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.16 gi|344213172|ref|YP_004797492.1| - 0.00027 20.8 0.2 0.00037 20.3 0.2 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|344213172|ref|YP_004797492.1| - 0.00046 19.7 0.1 0.0008 19.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|344213172|ref|YP_004797492.1| - 0.00057 19.9 0.1 0.00086 19.3 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|344213172|ref|YP_004797492.1| - 0.00089 18.4 0.1 0.0016 17.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|344213172|ref|YP_004797492.1| - 0.0012 18.5 0.1 0.0017 18.0 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|344213172|ref|YP_004797492.1| - 0.0027 17.1 0.1 0.0051 16.2 0.1 1.5 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|344213172|ref|YP_004797492.1| - 0.0029 16.9 0.1 0.0066 15.8 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|344213172|ref|YP_004797492.1| - 0.0031 17.7 0.0 0.0043 17.2 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|344213172|ref|YP_004797492.1| - 0.0057 15.5 0.3 0.0073 15.2 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|344213172|ref|YP_004797492.1| - 0.011 14.7 0.2 0.014 14.4 0.1 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|344213172|ref|YP_004797492.1| - 0.013 15.3 0.1 0.025 14.4 0.0 1.6 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase FAD_binding_3 PF01494.14 gi|344213172|ref|YP_004797492.1| - 0.024 13.7 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain XdhC_C PF13478.1 gi|344213172|ref|YP_004797492.1| - 0.03 14.6 0.0 0.046 14.0 0.0 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain Pyr_redox PF00070.22 gi|344213172|ref|YP_004797492.1| - 0.065 13.6 0.1 0.13 12.6 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|344213172|ref|YP_004797492.1| - 0.07 13.0 0.5 0.094 12.5 0.4 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|344213172|ref|YP_004797492.1| - 0.095 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPSase_L_chain PF00289.17 gi|344213172|ref|YP_004797492.1| - 0.1 12.6 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Gp_dh_N PF00044.19 gi|344213172|ref|YP_004797492.1| - 0.12 12.3 0.2 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A2M PF00207.17 gi|344213173|ref|YP_004797493.1| - 0.0013 18.2 0.2 0.87 9.2 0.0 2.4 2 0 0 2 2 2 2 Alpha-2-macroglobulin family Fn3-like PF14310.1 gi|344213173|ref|YP_004797493.1| - 0.0025 17.7 0.5 3.4 7.6 0.0 2.8 2 0 0 2 2 2 2 Fibronectin type III-like domain BsuPI PF12690.2 gi|344213173|ref|YP_004797493.1| - 0.0069 16.0 0.9 3.8 7.2 0.0 3.4 4 0 0 4 4 4 2 Intracellular proteinase inhibitor Lactamase_B_2 PF12706.2 gi|344213174|ref|YP_004797494.1| - 1.7e-30 106.0 0.5 2.7e-30 105.3 0.3 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|344213174|ref|YP_004797494.1| - 1.6e-16 60.5 2.6 1e-14 54.6 1.8 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|344213174|ref|YP_004797494.1| - 0.0097 15.3 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease GFO_IDH_MocA PF01408.17 gi|344213175|ref|YP_004797495.1| - 1.2e-24 87.1 0.2 2e-24 86.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|344213175|ref|YP_004797495.1| - 2.7e-07 30.3 0.1 5.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.7 gi|344213175|ref|YP_004797495.1| - 0.053 12.8 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF4066 PF13278.1 gi|344213176|ref|YP_004797496.1| - 7.5e-34 116.4 0.3 1.2e-33 115.7 0.2 1.3 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|344213176|ref|YP_004797496.1| - 8.8e-15 54.4 0.4 1.3e-14 53.8 0.3 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Fer2_2 PF01799.15 gi|344213176|ref|YP_004797496.1| - 0.019 14.8 0.0 0.09 12.6 0.0 1.9 1 1 1 2 2 2 0 [2Fe-2S] binding domain PhzC-PhzF PF02567.11 gi|344213177|ref|YP_004797497.1| - 2.6e-66 223.7 0.0 2.9e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|344213177|ref|YP_004797497.1| - 0.044 13.7 0.0 11 5.9 0.0 2.8 3 0 0 3 3 3 0 Diaminopimelate epimerase Pro_racemase PF05544.6 gi|344213177|ref|YP_004797497.1| - 0.079 11.7 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Proline racemase Glyoxalase_2 PF12681.2 gi|344213178|ref|YP_004797498.1| - 3.3e-16 59.8 0.7 3.8e-16 59.6 0.5 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344213178|ref|YP_004797498.1| - 4.7e-12 46.0 0.2 5.3e-12 45.8 0.1 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|344213178|ref|YP_004797498.1| - 2.4e-11 43.5 0.1 3e-11 43.3 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|344213178|ref|YP_004797498.1| - 0.002 18.0 0.2 0.033 14.1 0.1 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_5 PF14696.1 gi|344213178|ref|YP_004797498.1| - 0.0062 16.4 0.0 0.0082 16.0 0.0 1.1 1 0 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Polysacc_synt_3 PF13440.1 gi|344213179|ref|YP_004797499.1| - 8.6e-07 28.6 23.3 8.6e-07 28.6 16.2 3.2 2 2 0 2 2 2 1 Polysaccharide biosynthesis protein DUF3318 PF11780.3 gi|344213180|ref|YP_004797500.1| - 0.22 11.0 1.2 0.37 10.3 0.7 1.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3318) PALP PF00291.20 gi|344213181|ref|YP_004797501.1| - 6e-80 268.7 6.4 7.8e-80 268.3 4.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|344213181|ref|YP_004797501.1| - 1.9e-06 28.1 0.1 6.3e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|344213181|ref|YP_004797501.1| - 0.00014 21.2 1.8 0.00051 19.4 0.1 2.6 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.1 gi|344213181|ref|YP_004797501.1| - 0.015 14.9 0.6 0.045 13.4 0.0 2.2 3 0 0 3 3 3 0 ACT domain CagE_TrbE_VirB PF03135.9 gi|344213181|ref|YP_004797501.1| - 0.041 13.6 0.0 0.075 12.7 0.0 1.4 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system Pep_deformylase PF01327.16 gi|344213181|ref|YP_004797501.1| - 0.38 10.1 2.2 1.5 8.2 0.0 2.6 2 1 1 3 3 3 0 Polypeptide deformylase TrkA_N PF02254.13 gi|344213182|ref|YP_004797502.1| - 9.1e-42 141.7 6.5 1.2e-20 73.6 0.6 3.4 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|344213182|ref|YP_004797502.1| - 5.5e-25 86.7 1.0 4.9e-12 45.2 0.0 2.9 2 0 0 2 2 2 2 TrkA-C domain AlaDh_PNT_C PF01262.16 gi|344213182|ref|YP_004797502.1| - 0.0013 18.3 1.0 0.031 13.8 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.16 gi|344213182|ref|YP_004797502.1| - 0.0021 17.8 4.1 0.041 13.6 1.2 3.1 2 1 0 2 2 2 1 ThiF family XdhC_C PF13478.1 gi|344213182|ref|YP_004797502.1| - 0.0064 16.7 0.7 0.014 15.7 0.1 1.8 2 0 0 2 2 2 1 XdhC Rossmann domain AAA_19 PF13245.1 gi|344213182|ref|YP_004797502.1| - 0.0094 15.6 0.0 0.026 14.2 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain FAD_binding_3 PF01494.14 gi|344213182|ref|YP_004797502.1| - 0.01 14.9 0.2 0.017 14.2 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Ion_trans_2 PF07885.11 gi|344213182|ref|YP_004797502.1| - 0.012 15.3 3.1 0.035 13.8 2.2 1.8 1 1 0 1 1 1 0 Ion channel NAD_binding_8 PF13450.1 gi|344213182|ref|YP_004797502.1| - 0.035 14.1 0.3 0.31 11.0 0.1 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|344213182|ref|YP_004797502.1| - 0.058 13.2 0.5 0.18 11.6 0.0 2.0 3 0 0 3 3 3 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|344213182|ref|YP_004797502.1| - 0.073 13.4 0.0 0.37 11.2 0.0 2.2 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|344213182|ref|YP_004797502.1| - 0.078 13.2 0.9 0.28 11.4 0.1 2.3 2 1 0 2 2 2 0 Putative NAD(P)-binding ApbA PF02558.11 gi|344213182|ref|YP_004797502.1| - 0.083 12.3 0.2 0.27 10.6 0.0 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|344213182|ref|YP_004797502.1| - 0.56 9.8 5.5 0.46 10.1 0.0 2.9 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Citrate_synt PF00285.16 gi|344213183|ref|YP_004797503.1| - 4.7e-131 436.7 0.0 5.3e-131 436.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase TrkA_C PF02080.16 gi|344213184|ref|YP_004797504.1| - 6.9e-30 102.4 1.4 5.1e-16 58.0 0.0 3.1 2 1 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|344213184|ref|YP_004797504.1| - 1.7e-13 50.8 7.1 2e-06 28.1 1.3 2.8 2 1 0 2 2 2 2 PhoU domain DUF2899 PF11449.3 gi|344213185|ref|YP_004797505.1| - 0.036 13.2 1.1 0.04 13.0 0.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2899) PsaM PF07465.8 gi|344213185|ref|YP_004797505.1| - 4.1 7.0 7.1 0.31 10.6 0.8 2.3 2 1 0 2 2 2 0 Photosystem I protein M (PsaM) AstE_AspA PF04952.9 gi|344213186|ref|YP_004797506.1| - 5.3e-54 183.0 0.0 6e-54 182.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PALP PF00291.20 gi|344213187|ref|YP_004797507.1| - 1.1e-57 195.6 2.6 1.2e-57 195.4 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1743 PF08489.6 gi|344213190|ref|YP_004797510.1| - 7.5e-40 135.3 0.0 1.4e-39 134.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|344213190|ref|YP_004797510.1| - 0.0013 18.5 0.1 0.0031 17.3 0.1 1.6 1 1 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|344213190|ref|YP_004797510.1| - 0.0063 16.1 1.1 0.014 15.0 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|344213190|ref|YP_004797510.1| - 0.027 14.3 0.1 0.05 13.4 0.1 1.4 1 0 0 1 1 1 0 IBR domain tRNA_anti_2 PF13742.1 gi|344213190|ref|YP_004797510.1| - 0.036 13.9 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain C1_1 PF00130.17 gi|344213190|ref|YP_004797510.1| - 0.047 13.4 0.1 0.089 12.5 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.5 gi|344213190|ref|YP_004797510.1| - 0.051 13.5 2.4 5.2 7.1 0.1 2.9 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344213190|ref|YP_004797510.1| - 0.11 12.3 1.7 0.27 11.0 1.2 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|344213190|ref|YP_004797510.1| - 0.62 10.5 3.3 16 6.1 0.2 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type HTH_3 PF01381.17 gi|344213191|ref|YP_004797511.1| - 1.6e-08 34.2 0.0 2.7e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|344213191|ref|YP_004797511.1| - 2.2e-05 24.5 0.1 4.3e-05 23.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|344213191|ref|YP_004797511.1| - 3.5e-05 23.7 0.0 6.1e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|344213191|ref|YP_004797511.1| - 7.5e-05 22.3 0.1 0.00021 20.8 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|344213191|ref|YP_004797511.1| - 0.00033 20.1 0.2 0.00081 18.9 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|344213191|ref|YP_004797511.1| - 0.0051 16.7 0.1 0.013 15.4 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|344213191|ref|YP_004797511.1| - 0.016 14.5 0.0 0.033 13.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_25 PF13413.1 gi|344213191|ref|YP_004797511.1| - 0.03 13.9 0.6 0.049 13.2 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|344213191|ref|YP_004797511.1| - 0.062 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_8 PF02954.14 gi|344213191|ref|YP_004797511.1| - 0.076 12.5 0.0 0.19 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family NUMOD1 PF07453.8 gi|344213191|ref|YP_004797511.1| - 0.085 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_Tnp_Tc3_2 PF01498.13 gi|344213191|ref|YP_004797511.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Transposase HTH_36 PF13730.1 gi|344213191|ref|YP_004797511.1| - 0.16 12.0 0.0 1.2 9.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GST_N_3 PF13417.1 gi|344213192|ref|YP_004797512.1| - 1.6e-14 53.8 0.0 1.8e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|344213192|ref|YP_004797512.1| - 3.4e-13 49.3 0.0 5.6e-13 48.6 0.0 1.4 1 1 1 2 2 2 1 Glutaredoxin GST_N_2 PF13409.1 gi|344213192|ref|YP_004797512.1| - 2.5e-10 40.2 0.0 2.9e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|344213192|ref|YP_004797512.1| - 0.01 16.0 0.3 0.013 15.7 0.2 1.4 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|344213192|ref|YP_004797512.1| - 0.095 12.8 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Pribosyltran PF00156.22 gi|344213193|ref|YP_004797513.1| - 1.2e-12 47.6 2.6 2.9e-12 46.3 1.8 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|344213193|ref|YP_004797513.1| - 0.00059 19.1 0.1 0.00075 18.7 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.1 gi|344213193|ref|YP_004797513.1| - 0.025 14.3 0.2 0.036 13.8 0.1 1.4 2 0 0 2 2 2 0 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.1 gi|344213193|ref|YP_004797513.1| - 0.063 12.5 0.4 0.12 11.6 0.1 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase PGM_PMM_I PF02878.11 gi|344213194|ref|YP_004797514.1| - 1.8e-33 114.9 0.0 3.5e-33 114.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|344213194|ref|YP_004797514.1| - 5e-28 97.4 0.2 5e-28 97.4 0.1 2.2 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|344213194|ref|YP_004797514.1| - 8.6e-16 57.9 0.0 1.7e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|344213194|ref|YP_004797514.1| - 5.6e-15 55.1 0.3 1.4e-14 53.7 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Seryl_tRNA_N PF02403.17 gi|344213195|ref|YP_004797515.1| - 0.0039 17.2 0.3 0.0039 17.2 0.2 2.4 3 1 0 3 3 3 1 Seryl-tRNA synthetase N-terminal domain PRA-CH PF01502.13 gi|344213196|ref|YP_004797516.1| - 3.9e-37 125.7 0.5 5.3e-37 125.2 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Prim-Pol PF09250.6 gi|344213196|ref|YP_004797516.1| - 0.11 12.4 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal Arc_PepC_II PF06847.6 gi|344213197|ref|YP_004797517.1| - 3.2e-18 65.9 0.2 1.1e-17 64.2 0.0 1.9 3 0 0 3 3 3 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|344213197|ref|YP_004797517.1| - 3.3e-08 33.6 8.7 3.3e-08 33.6 6.0 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family Fer2 PF00111.22 gi|344213198|ref|YP_004797518.1| - 4.7e-15 55.0 0.2 6.5e-15 54.6 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|344213198|ref|YP_004797518.1| - 0.032 14.0 0.1 0.058 13.2 0.0 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.15 gi|344213199|ref|YP_004797519.1| - 7.9e-58 195.6 28.6 7.9e-58 195.6 19.8 1.6 2 0 0 2 2 2 1 Phosphate transporter family SieB PF14163.1 gi|344213199|ref|YP_004797519.1| - 5.4 6.5 8.3 0.32 10.5 1.5 2.0 2 0 0 2 2 2 0 Superinfection exclusion protein B IncA PF04156.9 gi|344213200|ref|YP_004797520.1| - 1.1e-10 41.4 6.5 1.1e-10 41.4 4.5 2.1 1 1 1 2 2 2 1 IncA protein DUF3540 PF12059.3 gi|344213200|ref|YP_004797520.1| - 0.00026 20.6 13.4 0.00026 20.6 9.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3540) Laminin_II PF06009.7 gi|344213200|ref|YP_004797520.1| - 0.00057 19.6 39.7 0.13 11.9 8.1 3.4 1 1 2 3 3 3 3 Laminin Domain II MCPsignal PF00015.16 gi|344213200|ref|YP_004797520.1| - 0.00061 19.3 44.0 0.0015 18.1 12.3 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.4 gi|344213200|ref|YP_004797520.1| - 0.0023 18.0 33.2 0.0024 17.9 5.5 4.1 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 EzrA PF06160.7 gi|344213200|ref|YP_004797520.1| - 0.0031 15.7 20.8 0.0031 15.7 14.4 2.0 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA WXG100 PF06013.7 gi|344213200|ref|YP_004797520.1| - 0.0041 17.0 24.0 0.0067 16.4 5.9 4.4 1 1 2 4 4 4 2 Proteins of 100 residues with WXG Spc7 PF08317.6 gi|344213200|ref|YP_004797520.1| - 0.0062 15.2 13.8 0.0062 15.2 9.6 2.4 1 1 1 2 2 2 1 Spc7 kinetochore protein Nup54 PF13874.1 gi|344213200|ref|YP_004797520.1| - 0.0086 15.7 6.4 0.0086 15.7 4.4 3.1 1 1 1 2 2 1 1 Nucleoporin complex subunit 54 AAA_13 PF13166.1 gi|344213200|ref|YP_004797520.1| - 0.0088 14.5 32.9 0.017 13.6 22.8 1.4 1 1 0 1 1 1 1 AAA domain DUF4200 PF13863.1 gi|344213200|ref|YP_004797520.1| - 0.028 14.3 35.7 0.13 12.2 8.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DUF4201 PF13870.1 gi|344213200|ref|YP_004797520.1| - 0.05 13.0 21.4 0.34 10.3 3.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) ISG65-75 PF11727.3 gi|344213200|ref|YP_004797520.1| - 0.056 12.4 45.5 0.038 13.0 12.1 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF948 PF06103.6 gi|344213200|ref|YP_004797520.1| - 0.066 13.0 41.8 0.021 14.6 4.6 3.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.4 gi|344213200|ref|YP_004797520.1| - 0.11 11.4 25.8 0.17 10.8 1.9 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 PilJ PF13675.1 gi|344213200|ref|YP_004797520.1| - 0.13 12.6 16.6 0.85 9.9 3.3 3.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Fib_alpha PF08702.5 gi|344213200|ref|YP_004797520.1| - 0.14 12.2 28.9 1.9 8.6 1.9 3.5 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Synaptobrevin PF00957.16 gi|344213200|ref|YP_004797520.1| - 0.15 11.6 27.2 0.54 9.8 4.8 4.3 1 1 2 4 4 4 0 Synaptobrevin CorA PF01544.13 gi|344213200|ref|YP_004797520.1| - 0.24 10.3 14.6 0.26 10.3 4.0 2.5 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein OPA3 PF07047.7 gi|344213200|ref|YP_004797520.1| - 0.29 10.8 0.0 0.29 10.8 0.0 3.5 2 1 2 4 4 3 0 Optic atrophy 3 protein (OPA3) V-SNARE_C PF12352.3 gi|344213200|ref|YP_004797520.1| - 0.35 10.9 2.2 10 6.2 0.0 3.5 2 1 1 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus DUF2232 PF09991.4 gi|344213200|ref|YP_004797520.1| - 0.38 9.6 8.4 0.13 11.2 1.1 2.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2232) ApoLp-III PF07464.6 gi|344213200|ref|YP_004797520.1| - 0.53 10.3 48.1 0.95 9.4 20.7 3.1 1 1 1 2 2 1 0 Apolipophorin-III precursor (apoLp-III) Laminin_I PF06008.9 gi|344213200|ref|YP_004797520.1| - 0.7 9.1 35.0 32 3.7 24.3 2.4 1 1 0 1 1 1 0 Laminin Domain I AAA_27 PF13514.1 gi|344213200|ref|YP_004797520.1| - 0.75 7.3 37.2 1.1 6.8 25.8 1.2 1 0 0 1 1 1 0 AAA domain Sec34 PF04136.10 gi|344213200|ref|YP_004797520.1| - 0.91 9.2 15.6 1 9.0 0.6 2.9 1 1 2 3 3 3 0 Sec34-like family DUF1664 PF07889.7 gi|344213200|ref|YP_004797520.1| - 1.5 8.6 29.6 51 3.6 4.6 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF2580 PF10824.3 gi|344213200|ref|YP_004797520.1| - 1.5 9.2 28.0 0.05 13.9 9.8 3.5 1 1 3 4 4 4 0 Protein of unknown function (DUF2580) DUF3584 PF12128.3 gi|344213200|ref|YP_004797520.1| - 1.8 5.7 37.8 2.5 5.3 26.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) YjcZ PF13990.1 gi|344213200|ref|YP_004797520.1| - 1.9 7.5 20.2 0.084 11.9 5.5 2.5 1 1 1 2 2 2 0 YjcZ-like protein Spectrin PF00435.16 gi|344213200|ref|YP_004797520.1| - 2.3 8.5 33.9 6 7.2 9.2 3.0 1 1 2 3 3 3 0 Spectrin repeat Serine_rich PF08824.5 gi|344213200|ref|YP_004797520.1| - 2.9 7.5 16.2 5.8 6.6 0.5 3.1 1 1 3 4 4 4 0 Serine rich protein interaction domain TMP_2 PF06791.8 gi|344213200|ref|YP_004797520.1| - 2.9 7.4 31.8 0.015 14.9 8.6 2.5 1 1 1 2 2 1 0 Prophage tail length tape measure protein DASH_Duo1 PF08651.5 gi|344213200|ref|YP_004797520.1| - 3.7 7.2 10.8 3.2 7.4 0.5 3.6 2 1 1 3 3 3 0 DASH complex subunit Duo1 Syntaxin-6_N PF09177.6 gi|344213200|ref|YP_004797520.1| - 3.8 7.9 32.6 5.2 7.5 6.0 3.5 1 1 2 3 3 2 0 Syntaxin 6, N-terminal Snapin_Pallidin PF14712.1 gi|344213200|ref|YP_004797520.1| - 3.9 7.8 19.5 0.18 12.1 3.3 3.4 1 1 2 3 3 3 0 Snapin/Pallidin Syntaxin PF00804.20 gi|344213200|ref|YP_004797520.1| - 4.1 7.6 30.6 2.5 8.2 6.8 2.4 1 1 1 2 2 2 0 Syntaxin TMPIT PF07851.8 gi|344213200|ref|YP_004797520.1| - 4.4 6.2 27.4 5.1 6.0 8.4 2.2 1 1 1 2 2 2 0 TMPIT-like protein Tropomyosin PF00261.15 gi|344213200|ref|YP_004797520.1| - 4.5 6.2 58.2 2.4 7.1 19.5 2.2 1 1 0 2 2 2 0 Tropomyosin FlgN PF05130.7 gi|344213200|ref|YP_004797520.1| - 4.5 7.5 26.3 5.4 7.2 7.5 2.9 1 1 1 2 2 2 0 FlgN protein COG2 PF06148.6 gi|344213200|ref|YP_004797520.1| - 5.2 6.9 29.9 1.3 8.8 1.6 4.1 1 1 2 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.11 gi|344213200|ref|YP_004797520.1| - 5.7 5.6 26.1 1.7 7.4 3.4 3.2 1 1 2 3 3 3 0 RmuC family DUF3552 PF12072.3 gi|344213200|ref|YP_004797520.1| - 6.7 5.8 47.5 5 6.2 19.0 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|344213200|ref|YP_004797520.1| - 7.3 6.6 46.8 8.6 6.4 7.3 3.1 1 1 1 2 2 2 0 DivIVA protein Prominin PF05478.6 gi|344213200|ref|YP_004797520.1| - 7.7 3.9 22.7 2.3 5.6 7.0 2.1 1 1 1 2 2 2 0 Prominin DUF2203 PF09969.4 gi|344213200|ref|YP_004797520.1| - 7.9 6.7 30.0 9.4 6.4 3.5 3.2 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) GAS PF13851.1 gi|344213200|ref|YP_004797520.1| - 9.7 5.3 32.7 0.14 11.3 8.0 2.2 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|344213200|ref|YP_004797520.1| - 9.7 3.8 32.8 1.9 6.2 8.8 2.4 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family MtrB PF05440.7 gi|344213200|ref|YP_004797520.1| - 9.9 6.2 13.8 7.2 6.7 0.8 3.7 2 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B His_biosynth PF00977.16 gi|344213201|ref|YP_004797521.1| - 3.3e-72 242.4 3.8 3.7e-72 242.2 2.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|344213201|ref|YP_004797521.1| - 9.4e-12 44.4 0.4 6.6e-08 31.8 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|344213201|ref|YP_004797521.1| - 9.2e-08 31.2 0.1 0.0035 16.2 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|344213201|ref|YP_004797521.1| - 9.9e-08 31.5 3.0 0.0006 19.1 0.1 2.6 2 1 0 2 2 2 2 PcrB family NMO PF03060.10 gi|344213201|ref|YP_004797521.1| - 1.9e-05 23.9 1.8 1.9e-05 23.9 1.3 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.9 gi|344213201|ref|YP_004797521.1| - 2.5e-05 23.4 3.7 0.046 12.7 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|344213201|ref|YP_004797521.1| - 5e-05 22.4 0.3 0.0026 16.8 0.0 2.7 3 1 1 4 4 4 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|344213201|ref|YP_004797521.1| - 0.00025 19.6 0.7 0.23 9.9 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NanE PF04131.9 gi|344213201|ref|YP_004797521.1| - 0.001 18.0 0.4 0.73 8.7 0.0 2.2 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|344213201|ref|YP_004797521.1| - 0.0016 17.3 2.2 0.053 12.4 0.1 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.13 gi|344213201|ref|YP_004797521.1| - 0.0036 16.1 14.1 0.049 12.4 1.7 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|344213201|ref|YP_004797521.1| - 0.0051 15.9 0.8 0.0083 15.2 0.1 1.7 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI Ribul_P_3_epim PF00834.14 gi|344213201|ref|YP_004797521.1| - 0.021 13.9 2.2 0.14 11.2 0.1 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PA PF02225.17 gi|344213201|ref|YP_004797521.1| - 0.04 13.6 1.1 2.4 7.9 0.4 2.4 1 1 1 2 2 2 0 PA domain G3P_antiterm PF04309.7 gi|344213201|ref|YP_004797521.1| - 0.061 12.3 0.4 0.14 11.1 0.1 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator CoA_binding_2 PF13380.1 gi|344213201|ref|YP_004797521.1| - 0.072 13.2 0.9 1 9.5 0.0 2.2 2 0 0 2 2 2 0 CoA binding domain B12-binding PF02310.14 gi|344213201|ref|YP_004797521.1| - 0.097 12.5 6.4 1.5 8.6 0.5 2.7 1 1 0 2 2 2 0 B12 binding domain Glyco_hydro_97 PF10566.4 gi|344213202|ref|YP_004797522.1| - 4.3e-83 278.5 0.0 7.4e-83 277.7 0.0 1.4 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.1 gi|344213202|ref|YP_004797522.1| - 6.5e-73 244.8 0.0 1.1e-72 244.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 N-terminal DUF2223 PF09985.4 gi|344213202|ref|YP_004797522.1| - 1.9e-41 141.8 0.0 3.6e-41 140.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) GH97_C PF14509.1 gi|344213202|ref|YP_004797522.1| - 2.4e-23 82.1 0.0 9.6e-15 54.5 0.0 2.8 1 1 1 2 2 2 2 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.10 gi|344213202|ref|YP_004797522.1| - 5e-09 36.3 2.7 5e-09 36.3 1.9 3.4 3 0 0 3 3 3 1 Carbohydrate binding module (family 6) Filamin PF00630.14 gi|344213202|ref|YP_004797522.1| - 0.0033 17.9 0.0 22 5.7 0.0 3.5 3 0 0 3 3 3 1 Filamin/ABP280 repeat Methyltransf_11 PF08241.7 gi|344213203|ref|YP_004797523.1| - 9.1e-16 58.1 0.0 1.5e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344213203|ref|YP_004797523.1| - 3.7e-12 46.4 0.0 5.5e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344213203|ref|YP_004797523.1| - 1.7e-09 37.5 0.0 2.6e-09 36.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344213203|ref|YP_004797523.1| - 2.3e-09 37.0 0.0 3e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344213203|ref|YP_004797523.1| - 2.6e-08 34.4 0.0 4.1e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344213203|ref|YP_004797523.1| - 1.2e-07 32.0 0.0 2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|344213203|ref|YP_004797523.1| - 5.7e-06 26.3 0.4 1e-05 25.5 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344213203|ref|YP_004797523.1| - 9e-05 21.6 0.0 0.00018 20.7 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|344213203|ref|YP_004797523.1| - 0.00092 18.3 0.0 0.0014 17.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_8 PF05148.10 gi|344213203|ref|YP_004797523.1| - 0.0012 18.5 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Pox_MCEL PF03291.11 gi|344213203|ref|YP_004797523.1| - 0.028 13.2 0.0 0.14 11.0 0.0 1.8 2 0 0 2 2 2 0 mRNA capping enzyme MTS PF05175.9 gi|344213203|ref|YP_004797523.1| - 0.047 13.0 0.0 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain SnoaL_3 PF13474.1 gi|344213204|ref|YP_004797524.1| - 2.4e-06 27.5 1.6 2.7e-06 27.3 1.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF3225 PF11533.3 gi|344213204|ref|YP_004797524.1| - 0.082 12.5 0.5 0.33 10.6 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3225) MutS_V PF00488.16 gi|344213205|ref|YP_004797525.1| - 1.2e-96 322.6 0.0 2.1e-96 321.8 0.0 1.4 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|344213205|ref|YP_004797525.1| - 2.8e-41 141.5 5.8 5.9e-41 140.5 4.0 1.6 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|344213205|ref|YP_004797525.1| - 9.6e-27 93.2 0.0 1.9e-26 92.3 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|344213205|ref|YP_004797525.1| - 6.5e-25 87.1 0.9 1.3e-24 86.1 0.6 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|344213205|ref|YP_004797525.1| - 2e-21 76.5 0.0 5.1e-21 75.1 0.0 1.7 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|344213205|ref|YP_004797525.1| - 0.034 13.6 0.0 0.075 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|344213205|ref|YP_004797525.1| - 0.1 12.4 0.0 0.41 10.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain HATPase_c PF02518.21 gi|344213206|ref|YP_004797526.1| - 6e-19 67.7 0.6 1.6e-18 66.4 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|344213206|ref|YP_004797526.1| - 1.6e-15 57.0 0.4 6.6e-15 55.0 0.3 2.1 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|344213206|ref|YP_004797526.1| - 2.2e-15 56.8 0.0 5.1e-15 55.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain Response_reg PF00072.19 gi|344213206|ref|YP_004797526.1| - 2.3e-14 53.3 0.1 8.1e-14 51.5 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain HisKA PF00512.20 gi|344213206|ref|YP_004797526.1| - 5.4e-14 51.9 0.2 5.4e-14 51.9 0.1 3.8 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|344213206|ref|YP_004797526.1| - 4.1e-11 43.5 1.3 9.2e-11 42.4 0.3 2.1 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|344213206|ref|YP_004797526.1| - 1.3e-07 31.7 0.0 3e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|344213206|ref|YP_004797526.1| - 1.3e-06 28.1 0.0 6e-06 26.0 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|344213206|ref|YP_004797526.1| - 8.4e-06 25.8 0.1 6.6e-05 22.9 0.0 2.5 3 0 0 3 3 3 1 PAS fold OKR_DC_1_N PF03709.10 gi|344213206|ref|YP_004797526.1| - 2.8e-05 24.1 0.1 0.00014 21.8 0.0 2.3 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.1 gi|344213206|ref|YP_004797526.1| - 0.0019 17.9 0.1 0.007 16.1 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|344213206|ref|YP_004797526.1| - 0.0075 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_10 PF13596.1 gi|344213206|ref|YP_004797526.1| - 0.093 13.0 0.0 0.3 11.3 0.0 1.8 2 0 0 2 2 2 0 PAS domain ABC_tran PF00005.22 gi|344213207|ref|YP_004797527.1| - 3.7e-30 105.0 0.0 6.5e-30 104.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344213207|ref|YP_004797527.1| - 4e-11 43.4 0.7 4.1e-05 23.6 0.0 2.9 2 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|344213207|ref|YP_004797527.1| - 0.00034 20.0 0.1 0.00064 19.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|344213207|ref|YP_004797527.1| - 0.0019 18.5 0.0 0.0028 18.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344213207|ref|YP_004797527.1| - 0.012 14.8 2.0 0.14 11.3 1.4 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|344213207|ref|YP_004797527.1| - 0.022 14.9 0.1 0.081 13.1 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|344213207|ref|YP_004797527.1| - 0.027 14.1 0.1 0.056 13.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|344213207|ref|YP_004797527.1| - 0.032 14.2 0.3 0.071 13.0 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain DUF4162 PF13732.1 gi|344213207|ref|YP_004797527.1| - 0.033 14.7 0.0 0.072 13.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) NTPase_1 PF03266.10 gi|344213207|ref|YP_004797527.1| - 0.044 13.5 1.0 0.79 9.4 0.0 2.7 2 1 0 3 3 3 0 NTPase AAA_22 PF13401.1 gi|344213207|ref|YP_004797527.1| - 0.077 13.1 4.1 2 8.5 2.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|344213207|ref|YP_004797527.1| - 0.078 12.7 0.1 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain Zeta_toxin PF06414.7 gi|344213207|ref|YP_004797527.1| - 0.08 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|344213207|ref|YP_004797527.1| - 0.082 12.3 1.3 0.3 10.4 0.9 2.2 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|344213207|ref|YP_004797527.1| - 0.1 12.0 0.1 0.18 11.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NB-ARC PF00931.17 gi|344213207|ref|YP_004797527.1| - 0.13 11.0 0.1 0.27 10.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|344213207|ref|YP_004797527.1| - 0.14 12.0 0.1 3 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|344213207|ref|YP_004797527.1| - 0.16 11.3 1.5 0.6 9.4 1.0 1.9 1 1 0 1 1 1 0 AAA-like domain ABC2_membrane_3 PF12698.2 gi|344213208|ref|YP_004797528.1| - 0.0045 16.0 19.5 0.01 14.9 13.5 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4412 PF14371.1 gi|344213209|ref|YP_004797529.1| - 0.019 15.4 0.2 2.4 8.7 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4412) MucB_RseB PF03888.9 gi|344213210|ref|YP_004797530.1| - 0.0072 15.3 0.0 0.021 13.8 0.0 1.8 2 0 0 2 2 2 1 MucB/RseB family DUF1628 PF07790.6 gi|344213210|ref|YP_004797530.1| - 0.059 14.1 0.9 0.3 11.8 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) DUF4412 PF14371.1 gi|344213210|ref|YP_004797530.1| - 0.11 13.0 1.9 0.43 11.1 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4412) HTH_20 PF12840.2 gi|344213211|ref|YP_004797531.1| - 1e-10 41.2 0.0 1.5e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344213211|ref|YP_004797531.1| - 4.5e-07 29.1 0.0 7.8e-07 28.3 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344213211|ref|YP_004797531.1| - 6.1e-06 25.7 0.0 1.1e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|344213211|ref|YP_004797531.1| - 2e-05 24.1 0.0 3.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|344213211|ref|YP_004797531.1| - 0.00015 21.3 0.0 0.00049 19.6 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|344213211|ref|YP_004797531.1| - 0.00026 20.5 0.0 0.00039 19.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|344213211|ref|YP_004797531.1| - 0.00046 19.8 0.0 0.00067 19.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|344213211|ref|YP_004797531.1| - 0.001 18.5 0.0 0.0019 17.6 0.0 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FUR PF01475.14 gi|344213211|ref|YP_004797531.1| - 0.0031 17.4 0.0 0.0037 17.1 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family Pro-kuma_activ PF09286.6 gi|344213211|ref|YP_004797531.1| - 0.016 15.2 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain MarR PF01047.17 gi|344213211|ref|YP_004797531.1| - 0.017 14.7 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.4 gi|344213211|ref|YP_004797531.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|344213211|ref|YP_004797531.1| - 0.02 14.6 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|344213211|ref|YP_004797531.1| - 0.021 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain B-block_TFIIIC PF04182.7 gi|344213211|ref|YP_004797531.1| - 0.028 14.2 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Fe_dep_repress PF01325.14 gi|344213211|ref|YP_004797531.1| - 0.041 13.8 0.1 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.1 gi|344213211|ref|YP_004797531.1| - 0.051 13.1 0.0 0.062 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TetR_N PF00440.18 gi|344213211|ref|YP_004797531.1| - 0.054 13.1 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_36 PF13730.1 gi|344213211|ref|YP_004797531.1| - 0.058 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1492 PF07374.6 gi|344213211|ref|YP_004797531.1| - 0.058 13.5 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_Tnp_ISL3 PF13542.1 gi|344213211|ref|YP_004797531.1| - 0.071 12.3 0.0 0.17 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 PadR PF03551.9 gi|344213211|ref|YP_004797531.1| - 0.072 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|344213211|ref|YP_004797531.1| - 0.094 13.0 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|344213211|ref|YP_004797531.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|344213211|ref|YP_004797531.1| - 0.15 11.5 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 MscS_TM PF12794.2 gi|344213212|ref|YP_004797532.1| - 0.0023 16.5 0.9 0.0026 16.4 0.7 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 Acyl_transf_3 PF01757.17 gi|344213212|ref|YP_004797532.1| - 0.06 12.1 3.4 0.066 12.0 2.4 1.1 1 0 0 1 1 1 0 Acyltransferase family DUF3995 PF13160.1 gi|344213212|ref|YP_004797532.1| - 0.08 12.9 1.8 0.11 12.5 1.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3995) DUF4396 PF14342.1 gi|344213212|ref|YP_004797532.1| - 0.091 12.8 1.9 0.13 12.4 1.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4396) DUF456 PF04306.8 gi|344213212|ref|YP_004797532.1| - 0.1 12.6 2.6 0.13 12.2 1.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF456) SUR7 PF06687.7 gi|344213212|ref|YP_004797532.1| - 0.13 11.7 2.4 0.087 12.3 0.5 1.5 1 1 1 2 2 2 0 SUR7/PalI family NfeD PF01957.13 gi|344213212|ref|YP_004797532.1| - 0.14 12.2 3.0 5.1 7.2 1.7 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DUF3180 PF11377.3 gi|344213212|ref|YP_004797532.1| - 0.21 11.4 2.3 0.29 10.9 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3180) FeoB_C PF07664.7 gi|344213212|ref|YP_004797532.1| - 0.26 10.7 0.1 0.26 10.7 0.1 2.1 3 0 0 3 3 3 0 Ferrous iron transport protein B C terminus DUF202 PF02656.10 gi|344213212|ref|YP_004797532.1| - 1.3 9.3 7.4 38 4.5 5.1 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Oxidored_molyb PF00174.14 gi|344213213|ref|YP_004797533.1| - 0.0014 18.0 0.0 0.0034 16.8 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain RNA_pol_N PF01194.12 gi|344213214|ref|YP_004797534.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 RNA polymerases N / 8 kDa subunit Hydrolase_3 PF08282.7 gi|344213216|ref|YP_004797536.1| - 9.8e-10 38.4 0.0 0.0011 18.6 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344213216|ref|YP_004797536.1| - 2.3e-05 24.6 0.1 0.00041 20.5 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase MutL_C PF08676.6 gi|344213218|ref|YP_004797538.1| - 1.1e-36 125.5 0.0 1.7e-36 124.9 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|344213218|ref|YP_004797538.1| - 4e-31 106.9 0.0 7.2e-31 106.1 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|344213218|ref|YP_004797538.1| - 4.9e-12 45.6 0.0 1e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|344213218|ref|YP_004797538.1| - 2e-11 43.6 0.5 5e-11 42.3 0.2 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YokU PF14122.1 gi|344213218|ref|YP_004797538.1| - 0.27 10.9 0.0 0.91 9.2 0.0 1.8 2 0 0 2 2 2 0 YokU-like protein PfkB PF00294.19 gi|344213219|ref|YP_004797539.1| - 1.2e-26 93.5 0.4 1.4e-26 93.3 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CarboxypepD_reg PF13620.1 gi|344213220|ref|YP_004797540.1| - 8.8e-22 76.9 35.9 1e-09 38.3 0.9 4.8 3 2 2 5 5 5 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|344213220|ref|YP_004797540.1| - 9.6e-14 51.2 7.5 0.00018 21.4 0.0 4.3 2 1 2 4 4 4 4 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|344213220|ref|YP_004797540.1| - 7.8e-08 32.0 10.3 0.0012 18.5 0.0 4.5 4 1 1 5 5 5 2 PEGA domain DUF824 PF05688.6 gi|344213220|ref|YP_004797540.1| - 8.2e-08 31.7 7.6 0.0037 16.8 0.1 4.6 4 0 0 4 4 4 2 Salmonella repeat of unknown function (DUF824) DUF4198 PF10670.4 gi|344213220|ref|YP_004797540.1| - 6.8e-06 26.2 13.4 0.23 11.4 0.1 4.3 2 1 0 3 3 3 3 Domain of unknown function (DUF4198) Cna_B PF05738.8 gi|344213220|ref|YP_004797540.1| - 4.5e-05 23.1 12.2 0.052 13.3 0.2 5.0 5 0 0 5 5 5 2 Cna protein B-type domain Big_1 PF02369.11 gi|344213220|ref|YP_004797540.1| - 0.00015 21.5 0.2 0.00015 21.5 0.2 5.4 2 1 3 5 5 5 2 Bacterial Ig-like domain (group 1) Big_2 PF02368.13 gi|344213220|ref|YP_004797540.1| - 0.00016 21.4 9.7 0.00016 21.4 6.8 5.5 6 0 0 6 6 6 1 Bacterial Ig-like domain (group 2) DUF2606 PF10794.4 gi|344213220|ref|YP_004797540.1| - 0.00025 20.4 0.6 7.7 5.9 0.0 4.4 3 2 1 4 4 4 1 Protein of unknown function (DUF2606) YtkA PF13115.1 gi|344213220|ref|YP_004797540.1| - 0.00089 19.5 12.3 1.1 9.7 0.0 4.6 3 2 1 4 4 4 2 YtkA-like Dioxygenase_C PF00775.16 gi|344213220|ref|YP_004797540.1| - 0.013 14.7 4.5 3.5 6.8 0.2 3.3 3 0 0 3 3 3 0 Dioxygenase Vg_Tdu PF07545.9 gi|344213220|ref|YP_004797540.1| - 0.4 10.1 2.1 0.59 9.6 0.1 2.1 2 0 0 2 2 2 0 Vestigial/Tondu family fn3_3 PF14686.1 gi|344213220|ref|YP_004797540.1| - 0.87 9.7 4.2 0.47 10.6 0.2 2.6 3 1 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF2135 PF09906.4 gi|344213220|ref|YP_004797540.1| - 2.3 8.2 7.6 2 8.4 0.0 3.7 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2135) A2M_N_2 PF07703.9 gi|344213220|ref|YP_004797540.1| - 7.5 6.3 8.1 1.3 8.8 0.6 3.1 2 1 0 3 3 3 0 Alpha-2-macroglobulin family N-terminal region GCV_T PF01571.16 gi|344213221|ref|YP_004797541.1| - 1.1e-38 132.8 0.0 1.5e-38 132.3 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|344213221|ref|YP_004797541.1| - 2.4e-16 59.5 0.0 4.5e-16 58.6 0.0 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain UPF0029 PF01205.14 gi|344213222|ref|YP_004797542.1| - 3.5e-33 113.5 0.0 4.6e-33 113.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|344213222|ref|YP_004797542.1| - 1.4e-10 40.6 0.3 4e-09 35.9 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|344213222|ref|YP_004797542.1| - 4e-05 23.3 0.0 8.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus Fer2 PF00111.22 gi|344213223|ref|YP_004797543.1| - 2.7e-07 30.2 0.0 4.2e-07 29.6 0.0 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|344213223|ref|YP_004797543.1| - 0.0013 18.5 0.2 0.0034 17.1 0.2 1.7 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain ACT PF01842.20 gi|344213224|ref|YP_004797544.1| - 2.1e-08 33.4 1.4 4.7e-08 32.3 0.2 2.2 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|344213224|ref|YP_004797544.1| - 5.8e-05 23.3 0.9 0.00064 20.0 0.1 2.4 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|344213224|ref|YP_004797544.1| - 0.002 17.5 0.2 0.0044 16.5 0.0 1.6 2 0 0 2 2 2 1 ACT domain IGPD PF00475.13 gi|344213225|ref|YP_004797545.1| - 3.5e-62 208.5 1.3 3.5e-62 208.5 0.9 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase Abhydrolase_6 PF12697.2 gi|344213226|ref|YP_004797546.1| - 3.8e-27 95.6 12.2 4.5e-27 95.4 8.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344213226|ref|YP_004797546.1| - 5.2e-19 68.7 0.3 3.4e-17 62.7 0.2 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|344213226|ref|YP_004797546.1| - 4.8e-11 42.6 2.3 1.5e-10 40.9 1.6 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|344213226|ref|YP_004797546.1| - 0.017 15.3 0.1 0.021 15.0 0.1 1.2 1 0 0 1 1 1 0 Thioesterase domain Na_H_Exchanger PF00999.16 gi|344213227|ref|YP_004797547.1| - 5.4e-31 107.4 49.2 7.5e-31 107.0 34.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|344213227|ref|YP_004797547.1| - 3.2e-28 98.0 3.4 8.4e-28 96.7 2.4 1.7 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|344213227|ref|YP_004797547.1| - 1e-09 37.8 1.2 2.2e-09 36.7 0.0 2.3 3 0 0 3 3 3 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|344213227|ref|YP_004797547.1| - 4e-06 27.0 0.5 1.1e-05 25.5 0.3 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding Rossmann-like PF10727.4 gi|344213227|ref|YP_004797547.1| - 0.00058 19.5 1.3 0.0019 17.9 0.9 1.9 1 0 0 1 1 1 1 Rossmann-like domain XdhC_C PF13478.1 gi|344213227|ref|YP_004797547.1| - 0.00086 19.6 0.8 0.0025 18.1 0.5 1.9 1 1 1 2 2 2 1 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.9 gi|344213227|ref|YP_004797547.1| - 0.001 18.4 0.1 0.0019 17.6 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|344213227|ref|YP_004797547.1| - 0.0014 17.7 0.1 0.0026 16.8 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|344213227|ref|YP_004797547.1| - 0.0033 17.0 0.3 0.0033 17.0 0.2 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|344213227|ref|YP_004797547.1| - 0.0037 17.1 0.5 0.012 15.4 0.3 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|344213227|ref|YP_004797547.1| - 0.0073 15.7 0.1 0.019 14.3 0.1 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA YjgP_YjgQ PF03739.9 gi|344213227|ref|YP_004797547.1| - 0.015 14.1 3.1 0.045 12.4 2.1 1.9 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family 2-Hacid_dh_C PF02826.14 gi|344213227|ref|YP_004797547.1| - 0.042 13.0 0.0 0.12 11.5 0.0 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DFP PF04127.10 gi|344213227|ref|YP_004797547.1| - 0.53 9.8 7.0 0.024 14.2 0.7 1.7 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein tRNA-synt_2c PF01411.14 gi|344213229|ref|YP_004797549.1| - 7.4e-116 387.6 0.0 9.7e-116 387.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|344213229|ref|YP_004797549.1| - 1.4e-13 50.4 0.4 2.8e-13 49.5 0.3 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|344213229|ref|YP_004797549.1| - 2.4e-10 39.9 2.6 9e-10 38.1 1.8 2.0 1 0 0 1 1 1 1 DHHA1 domain Arch_flagellin PF01917.11 gi|344213230|ref|YP_004797550.1| - 8.5e-35 120.1 1.8 1e-34 119.8 1.2 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF929 PF06053.6 gi|344213230|ref|YP_004797550.1| - 0.06 12.4 0.2 0.35 9.9 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF929) DUF1628 PF07790.6 gi|344213230|ref|YP_004797550.1| - 0.075 13.7 2.1 0.17 12.6 1.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Rep_fac_C PF08542.6 gi|344213231|ref|YP_004797551.1| - 7.3e-23 80.3 0.0 1.5e-22 79.3 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|344213231|ref|YP_004797551.1| - 6.4e-20 71.6 0.0 1.2e-18 67.5 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|344213231|ref|YP_004797551.1| - 3.8e-17 62.4 0.0 7.1e-15 55.0 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|344213231|ref|YP_004797551.1| - 7e-09 34.9 0.0 7.5e-06 24.8 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|344213231|ref|YP_004797551.1| - 1.5e-08 34.0 0.0 1e-07 31.2 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|344213231|ref|YP_004797551.1| - 2.2e-08 34.3 0.2 0.0033 17.5 0.0 2.7 2 1 1 3 3 2 2 AAA domain AAA_14 PF13173.1 gi|344213231|ref|YP_004797551.1| - 6.6e-08 32.5 0.0 1.3e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|344213231|ref|YP_004797551.1| - 2e-06 27.9 2.1 0.0012 18.8 0.0 3.0 2 2 1 3 3 3 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|344213231|ref|YP_004797551.1| - 7.2e-05 22.2 0.0 0.0009 18.6 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|344213231|ref|YP_004797551.1| - 8.7e-05 21.4 0.0 0.011 14.4 0.0 2.6 1 1 1 2 2 2 1 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|344213231|ref|YP_004797551.1| - 0.00011 22.2 0.0 0.00024 21.1 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|344213231|ref|YP_004797551.1| - 0.00017 21.2 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|344213231|ref|YP_004797551.1| - 0.00019 21.1 0.0 0.00053 19.6 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|344213231|ref|YP_004797551.1| - 0.00049 20.9 0.7 0.0032 18.2 0.5 2.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344213231|ref|YP_004797551.1| - 0.00059 19.2 0.7 0.0052 16.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|344213231|ref|YP_004797551.1| - 0.00075 19.0 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.16 gi|344213231|ref|YP_004797551.1| - 0.00085 18.5 0.0 0.11 11.6 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|344213231|ref|YP_004797551.1| - 0.001 18.5 0.0 0.035 13.5 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF3253 PF11625.3 gi|344213231|ref|YP_004797551.1| - 0.0012 18.6 0.5 0.015 15.1 0.0 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF3253) AAA_18 PF13238.1 gi|344213231|ref|YP_004797551.1| - 0.0032 17.7 0.0 0.017 15.4 0.0 2.2 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.9 gi|344213231|ref|YP_004797551.1| - 0.0046 16.6 0.0 0.043 13.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|344213231|ref|YP_004797551.1| - 0.0061 16.0 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PhoH PF02562.11 gi|344213231|ref|YP_004797551.1| - 0.016 14.4 0.0 0.084 12.0 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.17 gi|344213231|ref|YP_004797551.1| - 0.021 13.6 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|344213231|ref|YP_004797551.1| - 0.023 14.2 0.1 0.07 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|344213231|ref|YP_004797551.1| - 0.024 14.2 0.0 0.49 10.0 0.0 2.4 2 1 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|344213231|ref|YP_004797551.1| - 0.024 13.5 0.0 0.049 12.5 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|344213231|ref|YP_004797551.1| - 0.035 14.4 0.0 0.053 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|344213231|ref|YP_004797551.1| - 0.037 13.8 0.0 0.08 12.7 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|344213231|ref|YP_004797551.1| - 0.041 14.0 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.13 gi|344213231|ref|YP_004797551.1| - 0.044 13.2 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PEPCK_ATP PF01293.15 gi|344213231|ref|YP_004797551.1| - 0.049 12.1 0.0 0.088 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_11 PF13086.1 gi|344213231|ref|YP_004797551.1| - 0.054 13.0 0.0 0.084 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|344213231|ref|YP_004797551.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_10 PF12846.2 gi|344213231|ref|YP_004797551.1| - 0.057 12.8 0.4 6 6.2 0.0 2.4 1 1 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|344213231|ref|YP_004797551.1| - 0.072 12.9 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|344213231|ref|YP_004797551.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) SNF2_N PF00176.18 gi|344213231|ref|YP_004797551.1| - 0.12 11.1 0.0 0.24 10.1 0.0 1.4 2 0 0 2 2 1 0 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|344213231|ref|YP_004797551.1| - 0.14 11.0 0.0 0.28 10.0 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Acetyltransf_10 PF13673.1 gi|344213232|ref|YP_004797552.1| - 3e-10 40.2 0.0 3.5e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|344213232|ref|YP_004797552.1| - 1.3e-09 37.9 0.1 3.1e-09 36.7 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|344213232|ref|YP_004797552.1| - 6e-07 29.5 0.0 9.7e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|344213232|ref|YP_004797552.1| - 0.00018 21.3 0.0 0.0008 19.2 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344213232|ref|YP_004797552.1| - 0.0045 16.8 0.1 0.0071 16.2 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|344213232|ref|YP_004797552.1| - 0.0083 15.8 0.3 0.18 11.5 0.2 2.6 1 1 1 2 2 2 1 FR47-like protein RDD PF06271.7 gi|344213233|ref|YP_004797553.1| - 7.2e-15 55.0 5.8 2e-14 53.6 4.0 1.7 1 1 0 1 1 1 1 RDD family UbiA PF01040.13 gi|344213233|ref|YP_004797553.1| - 0.00098 18.4 2.6 0.00098 18.4 1.8 2.0 1 1 1 2 2 2 1 UbiA prenyltransferase family PGM_PMM_I PF02878.11 gi|344213234|ref|YP_004797554.1| - 1.2e-33 115.5 0.0 2.2e-33 114.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|344213234|ref|YP_004797554.1| - 1.4e-23 83.0 0.0 2.6e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|344213234|ref|YP_004797554.1| - 2.6e-22 79.0 0.2 5.8e-22 77.9 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|344213234|ref|YP_004797554.1| - 2.9e-16 59.2 0.8 1.5e-15 56.9 0.1 2.5 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain GIY-YIG PF01541.19 gi|344213235|ref|YP_004797555.1| - 2.7e-12 46.8 0.1 3.2e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|344213235|ref|YP_004797555.1| - 0.024 15.0 0.1 0.028 14.8 0.0 1.2 1 0 0 1 1 1 0 T5orf172 domain MUG113 PF13455.1 gi|344213235|ref|YP_004797555.1| - 0.044 14.2 0.1 0.071 13.5 0.1 1.4 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 AIRC PF00731.15 gi|344213237|ref|YP_004797557.1| - 2.9e-15 55.8 3.3 2.9e-15 55.8 2.3 2.0 2 0 0 2 2 2 1 AIR carboxylase CBFD_NFYB_HMF PF00808.18 gi|344213238|ref|YP_004797558.1| - 0.00031 20.7 0.0 0.00037 20.4 0.0 1.3 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF1931 PF09123.6 gi|344213238|ref|YP_004797558.1| - 0.00032 20.6 0.8 0.00036 20.4 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) Histone PF00125.19 gi|344213238|ref|YP_004797558.1| - 0.0006 19.8 0.0 0.00079 19.5 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 SBP_bac_7 PF03480.8 gi|344213238|ref|YP_004797558.1| - 0.02 14.0 0.1 0.021 13.9 0.1 1.1 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 EF-hand_7 PF13499.1 gi|344213238|ref|YP_004797558.1| - 0.026 14.6 0.1 0.027 14.5 0.1 1.1 1 0 0 1 1 1 0 EF-hand domain pair Rib_5-P_isom_A PF06026.9 gi|344213239|ref|YP_004797559.1| - 5e-59 198.5 0.0 6e-59 198.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|344213239|ref|YP_004797559.1| - 1.6e-05 24.6 0.3 0.00013 21.6 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|344213239|ref|YP_004797559.1| - 0.088 11.6 0.1 0.14 11.0 0.1 1.3 1 0 0 1 1 1 0 Putative sugar-binding domain PGM_PMM_I PF02878.11 gi|344213240|ref|YP_004797560.1| - 9.9e-33 112.5 0.0 1.7e-32 111.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|344213240|ref|YP_004797560.1| - 9.1e-19 67.7 0.8 2.1e-18 66.5 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|344213240|ref|YP_004797560.1| - 5.3e-15 55.4 0.0 1.3e-14 54.2 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|344213240|ref|YP_004797560.1| - 1.3e-10 41.1 0.2 3.5e-10 39.7 0.2 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain OpuAC PF04069.7 gi|344213240|ref|YP_004797560.1| - 0.041 13.2 0.2 2.2 7.5 0.0 2.5 3 0 0 3 3 3 0 Substrate binding domain of ABC-type glycine betaine transport system KaiC PF06745.8 gi|344213241|ref|YP_004797561.1| - 0.014 14.5 0.2 0.017 14.2 0.2 1.1 1 0 0 1 1 1 0 KaiC DUF2391 PF09622.5 gi|344213242|ref|YP_004797562.1| - 0.00037 19.7 4.2 0.0011 18.2 2.9 1.7 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) FixP_N PF14715.1 gi|344213242|ref|YP_004797562.1| - 0.41 10.0 1.9 0.44 9.9 0.3 1.8 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP UPRTase PF14681.1 gi|344213243|ref|YP_004797563.1| - 5.4e-55 185.8 0.1 6.2e-55 185.6 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|344213243|ref|YP_004797563.1| - 2.1e-07 30.6 0.2 3.6e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DctM PF06808.7 gi|344213244|ref|YP_004797564.1| - 2.9e-83 279.7 45.1 1.5e-52 178.5 14.5 2.5 2 0 0 2 2 2 2 DctM-like transporters DUF1850 PF08905.6 gi|344213245|ref|YP_004797565.1| - 2.6e-21 75.2 0.0 3.5e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1 PF09084.6 gi|344213246|ref|YP_004797566.1| - 6.8e-09 35.6 1.2 1.7e-08 34.3 0.3 2.0 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|344213246|ref|YP_004797566.1| - 5.2e-08 32.5 2.2 9.3e-08 31.7 1.5 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|344213246|ref|YP_004797566.1| - 0.00016 21.3 2.4 0.00046 19.9 1.7 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NMT1_2 PF13379.1 gi|344213246|ref|YP_004797566.1| - 0.00096 18.6 0.7 0.036 13.4 0.0 2.1 1 1 1 2 2 2 1 NMT1-like family UCR_Fe-S_N PF10399.4 gi|344213246|ref|YP_004797566.1| - 0.088 11.9 0.7 0.21 10.7 0.5 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Orbi_VP6 PF01516.11 gi|344213246|ref|YP_004797566.1| - 2.4 7.1 7.8 3.7 6.5 5.4 1.3 1 0 0 1 1 1 0 Orbivirus helicase VP6 DJ-1_PfpI PF01965.19 gi|344213247|ref|YP_004797567.1| - 5.5e-14 51.8 0.1 1.7e-13 50.2 0.1 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|344213247|ref|YP_004797567.1| - 0.053 12.7 0.1 0.65 9.2 0.0 2.1 2 0 0 2 2 2 0 Putative amidotransferase PHO4 PF01384.15 gi|344213250|ref|YP_004797570.1| - 4.3e-39 134.0 41.0 4.3e-39 134.0 28.4 2.7 1 1 1 2 2 2 1 Phosphate transporter family DUF1660 PF07874.6 gi|344213251|ref|YP_004797571.1| - 0.099 12.9 0.2 0.19 12.0 0.1 1.5 1 1 0 1 1 1 0 Prophage protein (DUF1660) FAA_hydrolase PF01557.13 gi|344213252|ref|YP_004797572.1| - 0.042 13.3 0.1 0.061 12.7 0.1 1.2 1 0 0 1 1 1 0 Fumarylacetoacetate (FAA) hydrolase family CstA PF02554.9 gi|344213253|ref|YP_004797573.1| - 5.2e-124 413.6 21.9 5.2e-124 413.6 15.2 1.8 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|344213253|ref|YP_004797573.1| - 3.3e-28 98.5 5.6 3.3e-28 98.5 3.9 4.1 3 1 1 4 4 4 1 C-terminal domain on CstA (DUF4161) ArsA_ATPase PF02374.10 gi|344213254|ref|YP_004797574.1| - 4.8e-69 232.7 0.0 6e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|344213254|ref|YP_004797574.1| - 4.2e-13 49.1 0.0 8e-13 48.2 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344213254|ref|YP_004797574.1| - 0.00042 20.2 0.0 0.0057 16.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|344213254|ref|YP_004797574.1| - 0.011 15.3 0.3 0.05 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|344213254|ref|YP_004797574.1| - 0.016 14.6 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|344213254|ref|YP_004797574.1| - 0.034 13.5 0.1 0.074 12.4 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ParA PF10609.4 gi|344213254|ref|YP_004797574.1| - 0.11 12.3 0.0 0.46 10.4 0.0 2.0 2 0 0 2 2 2 0 ParA/MinD ATPase like Fer4_NifH PF00142.13 gi|344213254|ref|YP_004797574.1| - 0.12 11.5 0.0 0.24 10.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|344213254|ref|YP_004797574.1| - 0.16 11.3 0.7 0.57 9.5 0.5 1.9 1 1 0 1 1 1 0 AAA domain Cytochrom_B559a PF00284.15 gi|344213255|ref|YP_004797575.1| - 0.013 14.9 0.1 0.025 14.0 0.1 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit cobW PF02492.14 gi|344213256|ref|YP_004797576.1| - 7.6e-47 159.0 0.3 9.7e-47 158.6 0.2 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|344213256|ref|YP_004797576.1| - 2.6e-27 94.3 0.0 5.1e-27 93.4 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|344213256|ref|YP_004797576.1| - 0.0023 17.3 0.0 0.41 10.0 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain UPF0079 PF02367.12 gi|344213256|ref|YP_004797576.1| - 0.0064 16.1 0.1 0.017 14.7 0.0 1.7 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|344213256|ref|YP_004797576.1| - 0.0078 15.3 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin TrwB_AAD_bind PF10412.4 gi|344213256|ref|YP_004797576.1| - 0.0085 14.7 0.1 0.013 14.1 0.1 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|344213256|ref|YP_004797576.1| - 0.011 15.7 0.1 0.034 14.1 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain CbiA PF01656.18 gi|344213256|ref|YP_004797576.1| - 0.012 15.0 0.1 0.018 14.4 0.1 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|344213256|ref|YP_004797576.1| - 0.024 14.8 0.0 0.064 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|344213256|ref|YP_004797576.1| - 0.024 13.5 0.2 0.044 12.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|344213256|ref|YP_004797576.1| - 0.026 13.7 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|344213256|ref|YP_004797576.1| - 0.03 13.7 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Arch_ATPase PF01637.13 gi|344213256|ref|YP_004797576.1| - 0.056 13.1 0.0 0.078 12.6 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|344213256|ref|YP_004797576.1| - 0.074 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|344213256|ref|YP_004797576.1| - 0.085 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|344213256|ref|YP_004797576.1| - 0.092 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|344213256|ref|YP_004797576.1| - 0.098 12.6 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|344213256|ref|YP_004797576.1| - 0.1 12.9 0.0 0.23 11.7 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|344213256|ref|YP_004797576.1| - 0.16 11.5 0.1 0.39 10.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain zf-RING_3 PF14369.1 gi|344213257|ref|YP_004797577.1| - 0.001 19.0 1.2 0.0017 18.3 0.8 1.4 1 0 0 1 1 1 1 zinc-finger zinc-ribbons_6 PF07191.7 gi|344213257|ref|YP_004797577.1| - 0.0086 15.8 0.2 0.014 15.1 0.2 1.5 1 1 0 1 1 1 1 zinc-ribbons TerY-C PF15616.1 gi|344213257|ref|YP_004797577.1| - 0.013 15.4 0.8 0.013 15.4 0.6 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain DZR PF12773.2 gi|344213257|ref|YP_004797577.1| - 0.018 14.8 0.9 0.025 14.4 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon YdjO PF14169.1 gi|344213257|ref|YP_004797577.1| - 0.041 13.3 0.7 0.058 12.8 0.5 1.3 1 0 0 1 1 1 0 Cold-inducible protein YdjO zf-B_box PF00643.19 gi|344213257|ref|YP_004797577.1| - 0.048 13.5 0.2 6.5 6.7 0.0 2.2 2 0 0 2 2 2 0 B-box zinc finger Zn-ribbon_8 PF09723.5 gi|344213257|ref|YP_004797577.1| - 0.055 13.4 2.5 0.055 13.4 1.7 1.7 2 1 0 2 2 2 0 Zinc ribbon domain FYDLN_acid PF09538.5 gi|344213257|ref|YP_004797577.1| - 0.16 12.5 1.2 0.18 12.3 0.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) HypA PF01155.14 gi|344213257|ref|YP_004797577.1| - 0.19 11.4 1.8 0.22 11.2 1.3 1.4 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|344213257|ref|YP_004797577.1| - 0.29 10.9 5.3 1.2 8.9 2.9 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|344213257|ref|YP_004797577.1| - 0.61 9.4 5.1 1.6 8.1 3.6 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding Polyketide_cyc2 PF10604.4 gi|344213258|ref|YP_004797578.1| - 7.9e-05 22.8 1.4 0.00019 21.6 0.9 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport CD20 PF04103.10 gi|344213259|ref|YP_004797579.1| - 0.033 14.0 3.7 0.033 14.0 2.6 1.7 2 0 0 2 2 2 0 CD20-like family VirB3 PF05101.8 gi|344213259|ref|YP_004797579.1| - 3.8 7.5 7.2 0.87 9.6 2.1 2.0 2 1 1 3 3 3 0 Type IV secretory pathway, VirB3-like protein Cupin_2 PF07883.6 gi|344213261|ref|YP_004797581.1| - 1.1e-13 50.4 0.3 1.4e-13 50.0 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|344213261|ref|YP_004797581.1| - 0.00043 19.9 0.0 0.00055 19.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|344213261|ref|YP_004797581.1| - 0.00064 19.3 0.0 0.00074 19.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding_2 PF14525.1 gi|344213261|ref|YP_004797581.1| - 0.0019 17.7 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|344213261|ref|YP_004797581.1| - 0.0032 16.8 0.0 0.0039 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_7 PF12973.2 gi|344213261|ref|YP_004797581.1| - 0.011 15.5 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_1 PF00190.17 gi|344213261|ref|YP_004797581.1| - 0.013 14.8 0.0 0.018 14.4 0.0 1.2 1 0 0 1 1 1 0 Cupin DUF1255 PF06865.6 gi|344213261|ref|YP_004797581.1| - 0.037 14.2 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1255) DUF21 PF01595.15 gi|344213262|ref|YP_004797582.1| - 6e-52 175.5 2.4 8.4e-52 175.1 1.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|344213262|ref|YP_004797582.1| - 7.7e-21 73.6 2.7 1.9e-20 72.4 1.9 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|344213262|ref|YP_004797582.1| - 9.7e-19 66.8 5.4 3.7e-09 36.2 0.0 3.2 3 0 0 3 3 3 2 CBS domain MFS_1 PF07690.11 gi|344213262|ref|YP_004797582.1| - 0.0016 17.2 0.8 0.0023 16.7 0.6 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily GST_N_3 PF13417.1 gi|344213263|ref|YP_004797583.1| - 2.5e-13 50.0 0.0 3.1e-13 49.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|344213263|ref|YP_004797583.1| - 6e-13 48.5 0.1 8.3e-13 48.1 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|344213263|ref|YP_004797583.1| - 3.1e-10 39.8 0.0 3.7e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|344213263|ref|YP_004797583.1| - 0.0095 16.0 0.0 0.011 15.8 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|344213263|ref|YP_004797583.1| - 0.03 14.5 0.1 0.032 14.4 0.0 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) PqqD PF05402.7 gi|344213263|ref|YP_004797583.1| - 0.083 12.9 0.0 15 5.6 0.0 2.3 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) AhpC-TSA PF00578.16 gi|344213264|ref|YP_004797584.1| - 9.4e-16 57.6 0.0 1.1e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|344213264|ref|YP_004797584.1| - 3.3e-06 26.6 0.0 1.1e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 Redoxin Sua5_yciO_yrdC PF01300.13 gi|344213265|ref|YP_004797585.1| - 3.4e-50 169.7 0.0 3.9e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination PDDEXK_1 PF12705.2 gi|344213266|ref|YP_004797586.1| - 1.7 7.9 4.9 6.8 5.9 0.2 2.3 1 1 1 2 2 2 0 PD-(D/E)XK nuclease superfamily Exonuc_VIII PF06630.6 gi|344213267|ref|YP_004797587.1| - 0.03 13.6 0.0 0.052 12.8 0.0 1.4 1 0 0 1 1 1 0 Enterobacterial exodeoxyribonuclease VIII CCG PF02754.11 gi|344213268|ref|YP_004797588.1| - 1.8e-18 66.3 0.0 1.9e-12 47.0 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|344213268|ref|YP_004797588.1| - 1.8e-11 43.8 6.8 2.5e-11 43.3 3.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|344213268|ref|YP_004797588.1| - 5.6e-11 42.5 5.5 5.6e-11 42.5 3.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344213268|ref|YP_004797588.1| - 3.6e-10 38.9 11.2 3.8e-05 23.1 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|344213268|ref|YP_004797588.1| - 8.7e-08 31.8 14.2 1e-06 28.4 8.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|344213268|ref|YP_004797588.1| - 8.8e-08 32.4 9.6 0.0023 18.3 0.4 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344213268|ref|YP_004797588.1| - 9.5e-08 32.3 20.8 2.3e-07 31.0 6.5 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344213268|ref|YP_004797588.1| - 2.2e-06 27.2 18.5 0.00024 20.8 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|344213268|ref|YP_004797588.1| - 1.2e-05 25.5 8.1 1.2e-05 25.5 5.6 2.7 3 1 1 4 4 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|344213268|ref|YP_004797588.1| - 2e-05 24.2 22.0 0.00051 19.8 2.1 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|344213268|ref|YP_004797588.1| - 0.00042 20.1 11.7 0.041 13.7 0.5 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|344213268|ref|YP_004797588.1| - 0.0015 19.2 14.0 0.011 16.4 8.6 2.7 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|344213268|ref|YP_004797588.1| - 0.0022 18.1 19.7 0.0092 16.2 1.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|344213268|ref|YP_004797588.1| - 0.0056 17.2 7.2 0.52 10.9 0.4 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Nitrate_red_gam PF02665.9 gi|344213268|ref|YP_004797588.1| - 0.0095 15.3 2.5 0.016 14.5 1.8 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_3 PF12798.2 gi|344213268|ref|YP_004797588.1| - 0.082 13.5 24.8 0.16 12.5 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|344213268|ref|YP_004797588.1| - 0.23 11.8 15.0 0.75 10.2 0.4 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain DUF202 PF02656.10 gi|344213268|ref|YP_004797588.1| - 0.76 10.0 4.5 3.1 8.0 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF202) TrkA_N PF02254.13 gi|344213269|ref|YP_004797589.1| - 2.1e-27 95.4 3.0 2.9e-27 94.9 2.1 1.2 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|344213269|ref|YP_004797589.1| - 9.5e-07 29.0 0.4 1.4e-06 28.4 0.3 1.2 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|344213269|ref|YP_004797589.1| - 0.0011 18.0 0.7 0.0018 17.3 0.5 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|344213269|ref|YP_004797589.1| - 0.0024 17.5 0.5 0.0037 16.9 0.4 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|344213269|ref|YP_004797589.1| - 0.013 14.6 0.1 0.024 13.7 0.1 1.6 1 0 0 1 1 1 0 Thi4 family NAD_binding_2 PF03446.10 gi|344213269|ref|YP_004797589.1| - 0.016 15.0 0.2 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|344213269|ref|YP_004797589.1| - 0.04 13.0 0.1 0.059 12.5 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|344213269|ref|YP_004797589.1| - 0.066 12.5 0.2 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|344213269|ref|YP_004797589.1| - 0.069 12.9 1.5 0.17 11.6 0.4 1.9 1 1 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MoCF_biosynth PF00994.19 gi|344213271|ref|YP_004797591.1| - 1.4e-31 108.7 0.6 4.8e-31 107.0 0.1 1.8 2 0 0 2 2 2 1 Probable molybdopterin binding domain ALAD PF00490.16 gi|344213272|ref|YP_004797592.1| - 1e-139 464.9 0.0 1.2e-139 464.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF4129 PF13559.1 gi|344213273|ref|YP_004797593.1| - 1.9e-08 34.1 7.7 1.9e-08 34.1 5.3 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF58 PF01882.13 gi|344213275|ref|YP_004797595.1| - 2e-17 63.1 0.4 4.7e-17 61.9 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|344213275|ref|YP_004797595.1| - 2.1e-07 30.9 1.1 2.1e-07 30.9 0.7 3.0 3 1 1 4 4 4 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|344213275|ref|YP_004797595.1| - 0.00086 19.3 2.5 0.0034 17.3 0.1 2.6 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|344213275|ref|YP_004797595.1| - 0.0019 18.1 0.0 0.0048 16.9 0.0 1.6 2 0 0 2 2 2 1 CARDB TRAP_beta PF05753.9 gi|344213275|ref|YP_004797595.1| - 0.0061 15.7 0.0 0.018 14.2 0.0 1.7 2 0 0 2 2 2 1 Translocon-associated protein beta (TRAPB) Toprim_3 PF13362.1 gi|344213275|ref|YP_004797595.1| - 0.0073 16.5 0.3 3.9 7.7 0.0 3.0 3 0 0 3 3 3 2 Toprim domain DUF3917 PF13055.1 gi|344213276|ref|YP_004797596.1| - 0.44 10.8 4.2 0.77 10.0 2.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3917) HATPase_c PF02518.21 gi|344213277|ref|YP_004797597.1| - 2.1e-18 66.0 0.0 3.7e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|344213277|ref|YP_004797597.1| - 1.8e-14 53.9 0.0 4.9e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|344213277|ref|YP_004797597.1| - 2.3e-14 53.3 0.7 5.3e-06 26.4 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|344213277|ref|YP_004797597.1| - 1.6e-12 47.1 0.0 4.4e-06 26.4 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|344213277|ref|YP_004797597.1| - 1.5e-09 37.7 0.0 0.00074 19.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|344213277|ref|YP_004797597.1| - 3.4e-07 29.8 0.1 0.00022 20.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain HATPase_c_2 PF13581.1 gi|344213277|ref|YP_004797597.1| - 4.1e-05 23.3 0.0 0.00011 21.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|344213277|ref|YP_004797597.1| - 0.017 15.0 2.3 0.025 14.5 0.6 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain MCPsignal PF00015.16 gi|344213278|ref|YP_004797598.1| - 1.1e-35 123.1 49.4 1.2e-35 123.0 22.9 2.4 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|344213278|ref|YP_004797598.1| - 0.0014 18.4 15.3 0.084 12.7 1.5 3.4 3 1 1 4 4 4 2 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|344213278|ref|YP_004797598.1| - 0.0071 15.9 11.8 0.046 13.3 2.2 2.9 1 1 1 2 2 2 1 IncA protein DUF1664 PF07889.7 gi|344213278|ref|YP_004797598.1| - 0.0095 15.7 14.9 0.39 10.5 0.3 4.2 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|344213278|ref|YP_004797598.1| - 0.012 15.7 10.9 15 5.7 0.0 4.7 5 0 0 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prominin PF05478.6 gi|344213278|ref|YP_004797598.1| - 0.05 11.1 5.6 0.088 10.3 3.9 1.4 1 0 0 1 1 1 0 Prominin NPV_P10 PF05531.7 gi|344213278|ref|YP_004797598.1| - 0.063 13.5 19.6 0.63 10.3 0.7 4.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|344213278|ref|YP_004797598.1| - 0.17 10.5 9.1 1.3 7.6 0.8 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein Transposase_22 PF02994.9 gi|344213278|ref|YP_004797598.1| - 0.22 10.0 4.7 0.054 11.9 0.9 1.6 2 0 0 2 2 2 0 L1 transposable element DUF4200 PF13863.1 gi|344213278|ref|YP_004797598.1| - 0.26 11.2 8.9 1.1 9.2 0.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) GAS PF13851.1 gi|344213278|ref|YP_004797598.1| - 0.29 10.3 2.7 11 5.1 0.1 2.7 3 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|344213278|ref|YP_004797598.1| - 0.31 10.7 25.8 0.57 9.9 0.2 4.3 2 2 1 3 3 3 0 Laminin Domain II Med9 PF07544.8 gi|344213278|ref|YP_004797598.1| - 0.32 10.7 2.1 4.7 7.0 0.1 2.9 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DASH_Dad2 PF08654.5 gi|344213278|ref|YP_004797598.1| - 0.52 10.3 13.5 0.82 9.7 1.7 4.0 3 1 1 4 4 4 0 DASH complex subunit Dad2 Seryl_tRNA_N PF02403.17 gi|344213278|ref|YP_004797598.1| - 0.71 9.9 16.6 6.7 6.7 0.7 4.4 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain AAA_13 PF13166.1 gi|344213278|ref|YP_004797598.1| - 1 7.7 12.7 5.8 5.2 8.8 1.9 1 1 0 1 1 1 0 AAA domain Reo_sigmaC PF04582.7 gi|344213278|ref|YP_004797598.1| - 1.1 8.3 21.9 0.52 9.4 4.5 2.5 1 1 1 2 2 2 0 Reovirus sigma C capsid protein COG2 PF06148.6 gi|344213278|ref|YP_004797598.1| - 1.2 8.9 12.0 9 6.1 0.5 3.8 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.3 gi|344213278|ref|YP_004797598.1| - 1.5 6.0 22.2 0.034 11.5 6.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) RmuC PF02646.11 gi|344213278|ref|YP_004797598.1| - 1.6 7.4 7.5 4.8 5.9 0.2 3.4 2 2 2 4 4 4 0 RmuC family Syntaxin PF00804.20 gi|344213278|ref|YP_004797598.1| - 1.7 8.8 10.5 26 5.0 3.0 3.3 1 1 1 2 2 2 0 Syntaxin NAGLU_C PF12972.2 gi|344213278|ref|YP_004797598.1| - 1.7 7.9 6.7 0.62 9.4 1.7 2.0 2 0 0 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain Baculo_PEP_C PF04513.7 gi|344213278|ref|YP_004797598.1| - 2 8.2 21.0 0.41 10.4 3.1 3.6 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fzo_mitofusin PF04799.8 gi|344213278|ref|YP_004797598.1| - 2.1 7.7 4.1 31 3.9 0.1 3.4 2 2 2 4 4 4 0 fzo-like conserved region FH2 PF02181.18 gi|344213278|ref|YP_004797598.1| - 2.4 6.9 7.5 10 4.8 0.4 2.8 2 1 0 2 2 2 0 Formin Homology 2 Domain Fib_alpha PF08702.5 gi|344213278|ref|YP_004797598.1| - 2.6 8.1 6.0 17 5.5 0.3 3.3 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family Nup54 PF13874.1 gi|344213278|ref|YP_004797598.1| - 2.6 7.6 6.2 3.3 7.3 0.9 3.0 1 1 3 4 4 4 0 Nucleoporin complex subunit 54 APG6 PF04111.7 gi|344213278|ref|YP_004797598.1| - 7.4 5.5 10.7 2.6 7.0 1.5 2.3 1 1 0 2 2 2 0 Autophagy protein Apg6 Lipoprotein_7 PF01540.11 gi|344213278|ref|YP_004797598.1| - 7.7 5.4 14.2 1 8.3 2.7 2.8 1 1 2 3 3 3 0 Adhesin lipoprotein Ammonium_transp PF00909.16 gi|344213279|ref|YP_004797599.1| - 6.5e-96 321.2 43.7 7.5e-96 321.0 30.3 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|344213280|ref|YP_004797600.1| - 1.5e-32 112.0 0.1 1.8e-32 111.8 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II HisG_C PF08029.6 gi|344213280|ref|YP_004797600.1| - 0.096 12.6 0.3 0.44 10.5 0.0 2.0 2 0 0 2 2 2 0 HisG, C-terminal domain HTH_24 PF13412.1 gi|344213281|ref|YP_004797601.1| - 1.1e-13 50.2 0.0 6.2e-13 47.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|344213281|ref|YP_004797601.1| - 5.3e-12 45.0 1.9 9.4e-12 44.2 1.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|344213281|ref|YP_004797601.1| - 5.2e-11 42.1 0.2 9.3e-11 41.2 0.1 1.4 1 0 0 1 1 1 1 AsnC family MarR_2 PF12802.2 gi|344213281|ref|YP_004797601.1| - 6.4e-06 25.7 0.6 1e-05 25.0 0.4 1.5 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344213281|ref|YP_004797601.1| - 0.00019 21.0 0.0 0.00033 20.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|344213281|ref|YP_004797601.1| - 0.00039 19.9 0.1 0.00069 19.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|344213281|ref|YP_004797601.1| - 0.00058 19.4 0.0 0.00097 18.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.1 gi|344213281|ref|YP_004797601.1| - 0.0012 17.9 0.3 0.0026 16.9 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.1 gi|344213281|ref|YP_004797601.1| - 0.0013 19.0 0.3 0.0069 16.6 0.0 2.4 3 1 1 4 4 3 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|344213281|ref|YP_004797601.1| - 0.0033 17.2 0.0 0.0059 16.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|344213281|ref|YP_004797601.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF977 PF06163.6 gi|344213281|ref|YP_004797601.1| - 0.026 14.2 0.2 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF977) Trp_repressor PF01371.14 gi|344213281|ref|YP_004797601.1| - 0.034 14.0 0.1 0.089 12.7 0.0 1.7 2 0 0 2 2 2 0 Trp repressor protein HTH_Crp_2 PF13545.1 gi|344213281|ref|YP_004797601.1| - 0.034 13.9 0.0 0.066 13.0 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|344213281|ref|YP_004797601.1| - 0.039 13.5 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|344213281|ref|YP_004797601.1| - 0.046 13.7 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|344213281|ref|YP_004797601.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|344213281|ref|YP_004797601.1| - 0.084 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_DeoR PF08220.7 gi|344213281|ref|YP_004797601.1| - 0.09 12.3 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|344213281|ref|YP_004797601.1| - 0.14 12.2 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Peripla_BP_6 PF13458.1 gi|344213282|ref|YP_004797602.1| - 3.7e-56 190.9 6.8 4.6e-56 190.6 4.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344213282|ref|YP_004797602.1| - 1.2e-25 90.0 0.0 1.6e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Myco_19_kDa PF05481.7 gi|344213282|ref|YP_004797602.1| - 0.052 13.3 0.4 0.052 13.3 0.3 1.8 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen ParBc PF02195.13 gi|344213282|ref|YP_004797602.1| - 0.059 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 ParB-like nuclease domain CheC PF04509.7 gi|344213283|ref|YP_004797603.1| - 4.7e-12 45.4 0.4 8.3e-12 44.6 0.3 1.4 1 0 0 1 1 1 1 CheC-like family FliM PF02154.10 gi|344213283|ref|YP_004797603.1| - 0.11 12.1 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Flagellar motor switch protein FliM Peripla_BP_6 PF13458.1 gi|344213284|ref|YP_004797604.1| - 1.2e-61 208.9 4.9 1.6e-61 208.6 3.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344213284|ref|YP_004797604.1| - 1.5e-26 93.0 0.1 2.1e-26 92.5 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|344213284|ref|YP_004797604.1| - 1.7e-07 30.3 0.4 2.3e-07 29.9 0.3 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region RNA_pol_Rpb2_45 PF10385.4 gi|344213284|ref|YP_004797604.1| - 0.027 14.2 0.1 0.064 13.0 0.1 1.7 1 0 0 1 1 1 0 RNA polymerase beta subunit external 1 domain TAT_signal PF10518.4 gi|344213284|ref|YP_004797604.1| - 0.25 11.4 2.1 0.64 10.1 1.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NIR_SIR PF01077.17 gi|344213285|ref|YP_004797605.1| - 4.6e-45 152.7 0.2 3.5e-28 97.9 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|344213285|ref|YP_004797605.1| - 8.5e-37 124.6 0.0 7.6e-17 60.7 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|344213285|ref|YP_004797605.1| - 0.028 14.2 0.2 0.38 10.6 0.0 2.4 2 0 0 2 2 2 0 DGC domain MFS_1 PF07690.11 gi|344213286|ref|YP_004797606.1| - 1.4e-30 106.2 44.7 1.4e-30 106.2 31.0 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|344213286|ref|YP_004797606.1| - 0.00019 21.1 0.9 0.00019 21.1 0.6 2.6 2 0 0 2 2 2 1 MFS_1 like family Sugar_tr PF00083.19 gi|344213286|ref|YP_004797606.1| - 2.8 6.3 35.1 65 1.9 24.3 2.7 1 1 0 1 1 1 0 Sugar (and other) transporter Molybdopterin PF00384.17 gi|344213287|ref|YP_004797607.1| - 3.1e-57 194.2 0.0 4e-57 193.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|344213287|ref|YP_004797607.1| - 1.3e-18 66.8 0.0 3e-18 65.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|344213287|ref|YP_004797607.1| - 6.9e-05 22.5 0.6 0.0002 21.0 0.4 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Aminotran_3 PF00202.16 gi|344213288|ref|YP_004797608.1| - 3.4e-69 233.2 0.0 4.3e-69 232.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|344213288|ref|YP_004797608.1| - 0.0016 17.4 0.0 0.0018 17.2 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II PAS_9 PF13426.1 gi|344213290|ref|YP_004797610.1| - 3.3e-33 114.1 0.0 8.6e-16 58.2 0.0 2.6 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|344213290|ref|YP_004797610.1| - 2.9e-24 85.0 0.0 8.8e-11 41.5 0.0 2.6 2 1 0 2 2 2 2 PAS fold Response_reg PF00072.19 gi|344213290|ref|YP_004797610.1| - 2.7e-22 78.8 0.1 6e-22 77.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.5 gi|344213290|ref|YP_004797610.1| - 6.6e-20 71.2 0.3 8.9e-10 38.5 0.0 2.4 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|344213290|ref|YP_004797610.1| - 2e-13 49.6 0.2 1.2e-06 28.1 0.0 3.0 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|344213290|ref|YP_004797610.1| - 6e-13 48.7 0.0 1.6e-06 28.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold OKR_DC_1_N PF03709.10 gi|344213290|ref|YP_004797610.1| - 3.7e-06 26.9 0.1 6.7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.2 gi|344213290|ref|YP_004797610.1| - 7e-06 26.0 0.0 0.0035 17.3 0.0 3.0 2 1 0 2 2 2 1 PAS fold MEKHLA PF08670.6 gi|344213290|ref|YP_004797610.1| - 0.03 13.8 0.0 4.5 6.8 0.0 2.3 2 0 0 2 2 2 0 MEKHLA domain Pribosyltran_N PF13793.1 gi|344213291|ref|YP_004797611.1| - 1.7e-24 85.7 0.0 2.3e-23 82.1 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|344213291|ref|YP_004797611.1| - 9.3e-10 38.2 1.1 2.1e-09 37.1 0.1 2.1 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|344213291|ref|YP_004797611.1| - 5.5e-07 29.5 0.7 1.8e-06 27.8 0.2 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|344213291|ref|YP_004797611.1| - 0.00025 20.3 0.0 0.0005 19.3 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|344213291|ref|YP_004797611.1| - 0.00032 20.0 1.3 0.061 12.6 0.1 2.5 2 1 1 3 3 3 2 Phosphoribosyl transferase FIST_C PF10442.4 gi|344213291|ref|YP_004797611.1| - 0.016 15.1 0.1 0.24 11.3 0.1 2.2 1 1 1 2 2 2 0 FIST C domain tRNA-synt_1 PF00133.17 gi|344213292|ref|YP_004797612.1| - 2.4e-174 580.6 1.7 3.7e-174 580.0 1.2 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|344213292|ref|YP_004797612.1| - 2.5e-30 105.2 0.0 4.8e-30 104.3 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|344213292|ref|YP_004797612.1| - 2.6e-29 102.0 1.6 1.3e-11 43.7 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|344213292|ref|YP_004797612.1| - 0.0014 17.8 0.1 0.27 10.2 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|344213292|ref|YP_004797612.1| - 0.012 14.9 0.0 0.046 13.0 0.0 1.8 1 1 0 1 1 1 0 Leucyl-tRNA synthetase, Domain 2 PSII_Pbs27 PF13326.1 gi|344213292|ref|YP_004797612.1| - 0.18 11.7 0.6 2.3 8.2 0.0 2.6 2 1 0 2 2 2 0 Photosystem II Pbs27 UDG PF03167.14 gi|344213293|ref|YP_004797613.1| - 3.1e-32 111.1 0.0 4e-32 110.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HIT PF01230.18 gi|344213294|ref|YP_004797614.1| - 1e-26 93.2 0.0 3.7e-26 91.5 0.0 1.7 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|344213294|ref|YP_004797614.1| - 1.2e-14 54.5 0.0 1.4e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|344213294|ref|YP_004797614.1| - 0.00097 18.7 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 AAA_31 PF13614.1 gi|344213295|ref|YP_004797615.1| - 1.8e-07 31.1 0.0 3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|344213295|ref|YP_004797615.1| - 3.2e-06 26.6 0.1 4e-06 26.3 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|344213295|ref|YP_004797615.1| - 6.2e-05 22.1 0.2 0.039 13.0 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ YhjQ PF06564.7 gi|344213295|ref|YP_004797615.1| - 0.00017 21.0 0.4 0.5 9.6 0.3 2.1 2 0 0 2 2 2 2 YhjQ protein Usp PF00582.21 gi|344213296|ref|YP_004797616.1| - 8.9e-06 25.9 1.5 2.5e-05 24.4 1.1 1.7 1 1 0 1 1 1 1 Universal stress protein family RNase_H_2 PF13482.1 gi|344213297|ref|YP_004797617.1| - 3.6e-34 117.9 0.0 5e-34 117.4 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|344213297|ref|YP_004797617.1| - 0.0011 18.5 0.1 0.0018 17.7 0.0 1.5 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo1 PF03104.14 gi|344213297|ref|YP_004797617.1| - 0.024 13.5 0.0 1.6 7.5 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|344213297|ref|YP_004797617.1| - 0.028 13.9 0.1 0.33 10.4 0.0 2.2 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_T PF00929.19 gi|344213297|ref|YP_004797617.1| - 0.047 13.9 0.3 10 6.3 0.1 2.3 1 1 1 2 2 2 0 Exonuclease HHH_5 PF14520.1 gi|344213297|ref|YP_004797617.1| - 0.071 13.2 0.0 0.59 10.3 0.0 2.4 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF1404 PF07185.6 gi|344213298|ref|YP_004797618.1| - 0.045 13.3 1.5 0.05 13.1 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1404) Zn-ribbon_8 PF09723.5 gi|344213299|ref|YP_004797619.1| - 0.06 13.3 1.6 3.5 7.6 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|344213299|ref|YP_004797619.1| - 0.062 13.0 0.0 0.084 12.6 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|344213299|ref|YP_004797619.1| - 0.1 12.3 0.3 9.4 5.9 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|344213299|ref|YP_004797619.1| - 0.18 11.8 1.0 2.8 7.9 0.0 2.1 2 0 0 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|344213299|ref|YP_004797619.1| - 1.1 8.9 6.6 6.5 6.5 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.15 gi|344213299|ref|YP_004797619.1| - 1.7 8.6 4.0 12 5.8 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin DNA_ligase_ZBD PF03119.11 gi|344213299|ref|YP_004797619.1| - 4.9 6.9 6.5 14 5.4 0.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF35_N PF12172.3 gi|344213299|ref|YP_004797619.1| - 7.3 6.6 7.1 1.3e+02 2.7 3.8 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rhomboid PF01694.17 gi|344213300|ref|YP_004797620.1| - 1.9e-20 73.3 13.0 2.8e-20 72.8 9.0 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.5 gi|344213300|ref|YP_004797620.1| - 2.2e-05 24.7 0.3 5.6e-05 23.4 0.0 1.8 2 0 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) DUF123 PF01986.11 gi|344213301|ref|YP_004797621.1| - 5.4e-27 93.8 0.0 7.3e-27 93.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 tRNA-synt_1 PF00133.17 gi|344213302|ref|YP_004797622.1| - 4e-59 200.1 0.0 4.1e-20 71.3 0.0 5.0 1 1 3 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|344213302|ref|YP_004797622.1| - 1.2e-54 184.3 0.0 2e-54 183.7 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|344213302|ref|YP_004797622.1| - 5.7e-29 100.9 0.0 3.7e-21 75.2 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|344213302|ref|YP_004797622.1| - 4.7e-13 49.1 0.0 1.3e-12 47.7 0.0 1.7 1 1 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|344213302|ref|YP_004797622.1| - 0.015 14.0 0.0 0.048 12.3 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.7 gi|344213302|ref|YP_004797622.1| - 0.063 12.6 8.8 1.7 7.9 0.1 4.1 4 0 0 4 4 4 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|344213302|ref|YP_004797622.1| - 0.11 12.2 1.9 0.36 10.5 0.0 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.1 gi|344213302|ref|YP_004797622.1| - 0.25 10.6 7.0 2.2 7.5 0.0 3.9 4 0 0 4 4 4 0 zinc-ribbon domain DZR PF12773.2 gi|344213302|ref|YP_004797622.1| - 0.33 10.8 5.0 11 5.8 0.2 2.8 2 1 0 2 2 2 0 Double zinc ribbon BPD_transp_2 PF02653.11 gi|344213303|ref|YP_004797623.1| - 8e-37 126.6 34.2 8e-37 126.6 23.7 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Adeno_E4 PF05385.6 gi|344213303|ref|YP_004797623.1| - 0.2 11.6 0.1 0.35 10.8 0.1 1.3 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein BPD_transp_2 PF02653.11 gi|344213304|ref|YP_004797624.1| - 1.9e-48 164.7 33.3 1.9e-48 164.7 23.1 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4574 PF15141.1 gi|344213304|ref|YP_004797624.1| - 0.21 11.3 0.4 0.58 9.9 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4574) ABC_tran PF00005.22 gi|344213305|ref|YP_004797625.1| - 3.9e-49 166.4 0.0 8.7e-29 100.5 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|344213305|ref|YP_004797625.1| - 8.9e-12 45.5 0.0 7.2e-05 22.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|344213305|ref|YP_004797625.1| - 9e-06 25.1 0.2 0.0093 15.4 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|344213305|ref|YP_004797625.1| - 1.4e-05 24.3 0.0 0.013 14.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Bac_DnaA PF00308.13 gi|344213305|ref|YP_004797625.1| - 0.00021 20.9 1.1 0.0017 18.0 0.0 2.6 3 0 0 3 3 3 1 Bacterial dnaA protein SMC_N PF02463.14 gi|344213305|ref|YP_004797625.1| - 0.0013 18.0 0.1 2.7 7.1 0.0 3.1 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|344213305|ref|YP_004797625.1| - 0.0046 16.1 0.0 0.029 13.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|344213305|ref|YP_004797625.1| - 0.0075 16.4 1.5 0.19 11.8 0.3 3.0 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|344213305|ref|YP_004797625.1| - 0.0087 16.4 0.0 0.015 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|344213305|ref|YP_004797625.1| - 0.019 14.8 0.0 8.1 6.3 0.0 2.8 3 0 0 3 3 2 0 AAA domain AAA_25 PF13481.1 gi|344213305|ref|YP_004797625.1| - 0.02 14.2 0.2 0.79 9.0 0.0 2.6 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|344213305|ref|YP_004797625.1| - 0.022 14.6 0.0 0.25 11.3 0.0 2.7 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|344213305|ref|YP_004797625.1| - 0.024 14.2 0.2 0.28 10.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|344213305|ref|YP_004797625.1| - 0.031 13.6 0.7 0.28 10.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|344213305|ref|YP_004797625.1| - 0.049 13.3 1.1 5.8 6.7 0.0 3.7 4 0 0 4 4 3 0 Part of AAA domain UPF0079 PF02367.12 gi|344213305|ref|YP_004797625.1| - 0.08 12.5 0.4 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|344213305|ref|YP_004797625.1| - 0.083 12.8 0.0 0.49 10.3 0.0 2.3 1 1 0 1 1 1 0 AAA ATPase domain Miro PF08477.8 gi|344213305|ref|YP_004797625.1| - 0.13 12.7 0.0 2.5 8.6 0.0 2.7 3 0 0 3 3 2 0 Miro-like protein Bmp PF02608.9 gi|344213306|ref|YP_004797626.1| - 2.1e-61 207.3 5.6 2.7e-61 206.9 3.9 1.1 1 0 0 1 1 1 1 Basic membrane protein PHO4 PF01384.15 gi|344213307|ref|YP_004797627.1| - 4.4e-37 127.4 33.4 7.6e-37 126.6 23.1 1.4 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|344213308|ref|YP_004797628.1| - 1.8e-27 96.2 2.2 2.1e-27 96.0 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family GFO_IDH_MocA PF01408.17 gi|344213308|ref|YP_004797628.1| - 0.00098 19.6 0.1 0.0012 19.3 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold MRFAP1 PF15155.1 gi|344213308|ref|YP_004797628.1| - 0.011 16.0 2.6 0.015 15.6 1.3 1.6 1 1 1 2 2 2 0 MORF4 family-associated protein1 IMP_cyclohyd PF07826.6 gi|344213309|ref|YP_004797629.1| - 3.9e-51 173.2 0.3 7e-51 172.4 0.2 1.4 1 1 0 1 1 1 1 IMP cyclohydrolase-like protein Metallophos_2 PF12850.2 gi|344213310|ref|YP_004797630.1| - 2.3e-26 92.5 0.7 2.9e-26 92.1 0.5 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344213310|ref|YP_004797630.1| - 2.6e-08 33.4 3.2 5e-08 32.5 2.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Fer2 PF00111.22 gi|344213311|ref|YP_004797631.1| - 1.3e-12 47.2 0.0 2.6e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DnaJ PF00226.26 gi|344213311|ref|YP_004797631.1| - 3.3e-12 45.9 0.0 6.1e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|344213311|ref|YP_004797631.1| - 0.013 14.9 0.0 0.028 13.8 0.0 1.6 1 1 0 1 1 1 0 A repeated domain in UCH-protein AA_kinase PF00696.23 gi|344213312|ref|YP_004797632.1| - 1.5e-46 158.9 2.4 2.3e-46 158.3 1.6 1.3 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.1 gi|344213312|ref|YP_004797632.1| - 3.7e-17 61.5 0.2 4.8e-08 32.3 0.1 2.7 3 0 0 3 3 3 2 ACT domain ACT PF01842.20 gi|344213312|ref|YP_004797632.1| - 5.3e-07 28.9 0.9 3.7e-06 26.2 0.1 2.8 2 1 0 2 2 2 1 ACT domain DUF2007 PF09413.5 gi|344213312|ref|YP_004797632.1| - 0.0001 22.0 0.5 5 7.0 0.0 3.6 3 0 0 3 3 3 3 Domain of unknown function (DUF2007) YndJ PF14158.1 gi|344213314|ref|YP_004797634.1| - 3e-80 269.0 35.1 3e-80 269.0 24.3 1.4 1 1 0 1 1 1 1 YndJ-like protein YrhK PF14145.1 gi|344213314|ref|YP_004797634.1| - 0.92 9.2 8.4 0.55 9.9 0.1 3.3 3 0 0 3 3 3 0 YrhK-like protein DUF4166 PF13761.1 gi|344213315|ref|YP_004797635.1| - 1.1e-33 116.4 0.0 1.2e-33 116.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4166) PALP PF00291.20 gi|344213316|ref|YP_004797636.1| - 9.3e-63 212.2 2.0 1.2e-62 211.9 1.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.11 gi|344213316|ref|YP_004797636.1| - 0.44 10.7 3.8 0.22 11.6 1.1 1.6 2 0 0 2 2 2 0 C1 domain TrmB PF01978.14 gi|344213317|ref|YP_004797637.1| - 3.6e-14 52.2 0.0 4.6e-14 51.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344213317|ref|YP_004797637.1| - 4e-07 29.6 0.3 6.5e-07 28.9 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|344213317|ref|YP_004797637.1| - 4.1e-05 23.0 1.9 9.2e-05 21.9 0.2 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|344213317|ref|YP_004797637.1| - 4.5e-05 23.1 0.1 7.7e-05 22.4 0.1 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|344213317|ref|YP_004797637.1| - 0.0001 21.9 0.1 0.00015 21.3 0.1 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|344213317|ref|YP_004797637.1| - 0.0001 21.6 0.3 0.0002 20.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|344213317|ref|YP_004797637.1| - 0.00017 20.8 0.1 0.00028 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344213317|ref|YP_004797637.1| - 0.00019 21.0 0.0 0.00031 20.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|344213317|ref|YP_004797637.1| - 0.00041 20.6 0.1 0.00071 19.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|344213317|ref|YP_004797637.1| - 0.00097 18.8 0.3 0.0022 17.7 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|344213317|ref|YP_004797637.1| - 0.0016 18.0 0.2 0.0028 17.2 0.2 1.3 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.12 gi|344213317|ref|YP_004797637.1| - 0.0019 17.6 0.0 0.0021 17.5 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit DUF746 PF05344.6 gi|344213317|ref|YP_004797637.1| - 0.016 14.7 0.0 5.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.11 gi|344213317|ref|YP_004797637.1| - 0.033 14.2 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_29 PF13551.1 gi|344213317|ref|YP_004797637.1| - 0.037 14.1 0.1 0.049 13.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Phage_rep_org_N PF09681.5 gi|344213317|ref|YP_004797637.1| - 0.059 12.9 0.0 0.17 11.4 0.0 1.7 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Pribosyltran PF00156.22 gi|344213318|ref|YP_004797638.1| - 3e-07 30.1 0.0 5.2e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain OTCace_N PF02729.16 gi|344213319|ref|YP_004797639.1| - 5e-50 168.8 0.0 7.3e-50 168.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|344213319|ref|YP_004797639.1| - 2.2e-43 147.8 0.0 6e-43 146.4 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Peptidase_M20 PF01546.23 gi|344213320|ref|YP_004797640.1| - 1.3e-26 93.2 0.1 2e-26 92.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|344213320|ref|YP_004797640.1| - 1.7e-06 27.7 0.0 3.1e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Aminotran_3 PF00202.16 gi|344213321|ref|YP_004797641.1| - 3.1e-95 318.9 0.0 3.6e-95 318.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Strep_his_triad PF04270.8 gi|344213321|ref|YP_004797641.1| - 0.042 13.5 0.9 1.9 8.2 0.0 2.9 2 1 1 3 3 3 0 Streptococcal histidine triad protein AA_kinase PF00696.23 gi|344213322|ref|YP_004797642.1| - 4.8e-33 114.7 1.6 5.8e-33 114.4 1.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|344213323|ref|YP_004797643.1| - 5e-27 94.6 0.0 9e-27 93.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|344213323|ref|YP_004797643.1| - 6.7e-07 29.3 0.0 1.2e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|344213323|ref|YP_004797643.1| - 0.042 13.7 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RimK PF08443.6 gi|344213324|ref|YP_004797644.1| - 8.9e-35 119.8 0.0 3.9e-31 108.0 0.0 2.3 2 0 0 2 2 2 2 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|344213324|ref|YP_004797644.1| - 4.2e-16 59.2 0.0 7.2e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|344213324|ref|YP_004797644.1| - 7.1e-10 38.2 0.0 1.1e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|344213324|ref|YP_004797644.1| - 2.7e-07 30.5 0.0 4.2e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|344213324|ref|YP_004797644.1| - 3.8e-07 29.1 0.0 6.5e-07 28.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|344213324|ref|YP_004797644.1| - 9.6e-05 21.7 0.1 0.00044 19.5 0.0 2.0 2 1 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.1 gi|344213324|ref|YP_004797644.1| - 0.00018 20.7 0.0 0.00056 19.1 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|344213324|ref|YP_004797644.1| - 0.0013 18.0 0.1 0.0034 16.7 0.0 1.8 2 1 0 2 2 2 1 ATP-grasp domain DNA_RNApol_7kD PF03604.8 gi|344213325|ref|YP_004797645.1| - 0.00066 19.0 1.5 0.0065 15.9 1.1 2.0 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.7 gi|344213325|ref|YP_004797645.1| - 0.0027 17.4 1.1 0.012 15.4 0.7 1.9 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|344213325|ref|YP_004797645.1| - 0.0092 15.4 0.1 0.033 13.6 0.0 1.8 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|344213325|ref|YP_004797645.1| - 0.031 14.0 0.2 0.055 13.3 0.1 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.2 gi|344213325|ref|YP_004797645.1| - 0.036 14.0 2.6 0.13 12.2 0.1 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.14 gi|344213325|ref|YP_004797645.1| - 0.057 13.1 0.2 0.061 13.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CpXC PF14353.1 gi|344213325|ref|YP_004797645.1| - 0.073 13.0 0.1 1.3 8.9 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|344213325|ref|YP_004797645.1| - 0.085 12.8 0.7 0.17 11.8 0.5 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|344213325|ref|YP_004797645.1| - 0.13 11.5 0.3 7.7 5.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|344213325|ref|YP_004797645.1| - 0.17 11.7 1.2 12 5.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein RNA_POL_M_15KD PF02150.11 gi|344213325|ref|YP_004797645.1| - 0.26 11.0 1.4 1.1 8.9 1.0 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|344213325|ref|YP_004797645.1| - 0.32 10.9 1.9 5.5 6.9 0.2 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.1 gi|344213325|ref|YP_004797645.1| - 0.53 10.0 2.6 18 5.1 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF983 PF06170.7 gi|344213325|ref|YP_004797645.1| - 0.54 10.3 1.9 19 5.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Prok-RING_1 PF14446.1 gi|344213325|ref|YP_004797645.1| - 0.91 9.2 4.5 2.2 8.0 3.1 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Lyase_1 PF00206.15 gi|344213326|ref|YP_004797646.1| - 6.5e-54 183.2 0.0 1.2e-53 182.3 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|344213326|ref|YP_004797646.1| - 1.6e-10 40.9 0.9 1.6e-10 40.9 0.6 2.3 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal UCR_Fe-S_N PF10399.4 gi|344213326|ref|YP_004797646.1| - 1.8 7.8 8.4 0.56 9.4 0.2 2.7 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Arginosuc_synth PF00764.14 gi|344213327|ref|YP_004797647.1| - 1.9e-147 491.3 0.0 2.2e-147 491.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|344213327|ref|YP_004797647.1| - 1.2e-06 28.2 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|344213327|ref|YP_004797647.1| - 1.1e-05 24.7 0.0 1.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|344213327|ref|YP_004797647.1| - 0.00035 19.5 0.0 0.00054 18.9 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|344213327|ref|YP_004797647.1| - 0.00044 18.9 0.0 0.00067 18.3 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|344213327|ref|YP_004797647.1| - 0.18 11.2 0.0 0.43 10.0 0.0 1.7 2 0 0 2 2 2 0 PP-loop family P5CR_dimer PF14748.1 gi|344213328|ref|YP_004797648.1| - 0.16 12.0 8.9 2.7 8.0 0.5 2.3 2 0 0 2 2 2 0 Pyrroline-5-carboxylate reductase dimerisation PAGK PF15284.1 gi|344213328|ref|YP_004797648.1| - 0.18 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Phage-encoded virulence factor DUF2582 PF10771.4 gi|344213329|ref|YP_004797649.1| - 0.097 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) EpuA PF11772.3 gi|344213329|ref|YP_004797649.1| - 1.5 8.3 4.6 13 5.3 0.2 2.4 2 0 0 2 2 2 0 DNA-directed RNA polymerase subunit beta DUF4191 PF13829.1 gi|344213330|ref|YP_004797650.1| - 3.2 6.7 6.1 3.3 6.7 4.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) 2_5_RNA_ligase2 PF13563.1 gi|344213331|ref|YP_004797651.1| - 4.8e-17 62.0 0.1 5.4e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|344213331|ref|YP_004797651.1| - 1.2e-05 25.2 0.0 0.0039 17.1 0.0 2.6 2 1 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|344213331|ref|YP_004797651.1| - 0.025 14.2 0.0 0.03 14.0 0.0 1.1 1 0 0 1 1 1 0 AKAP7 2'5' RNA ligase-like domain DUF296 PF03479.10 gi|344213332|ref|YP_004797652.1| - 3.5e-27 94.3 0.0 3.8e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|344213333|ref|YP_004797653.1| - 0 1333.7 2.2 0 1331.5 1.5 1.8 1 1 0 1 1 1 1 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|344213333|ref|YP_004797653.1| - 0.061 13.1 11.0 0.083 12.6 4.7 2.4 2 0 0 2 2 2 0 zinc-ribbons DUF2072 PF09845.4 gi|344213333|ref|YP_004797653.1| - 0.16 11.8 8.5 1 9.2 0.2 3.2 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) DZR PF12773.2 gi|344213333|ref|YP_004797653.1| - 0.65 9.8 20.2 6.8 6.6 9.2 3.2 2 1 0 2 2 2 0 Double zinc ribbon YscO PF07321.7 gi|344213334|ref|YP_004797654.1| - 0.038 13.8 0.6 0.046 13.5 0.4 1.1 1 0 0 1 1 1 0 Type III secretion protein YscO DUF1192 PF06698.6 gi|344213334|ref|YP_004797654.1| - 0.21 11.3 1.1 0.32 10.8 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) 2-Hacid_dh_C PF02826.14 gi|344213335|ref|YP_004797655.1| - 4.4e-58 195.3 0.0 7.7e-58 194.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|344213335|ref|YP_004797655.1| - 1.5e-35 121.5 0.4 3.9e-35 120.2 0.4 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.20 gi|344213335|ref|YP_004797655.1| - 3.5e-06 26.3 0.8 0.0018 17.7 0.0 3.1 2 0 0 2 2 2 2 ACT domain NAD_binding_2 PF03446.10 gi|344213335|ref|YP_004797655.1| - 1.4e-05 25.0 0.1 7.9e-05 22.5 0.0 2.3 2 1 1 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|344213335|ref|YP_004797655.1| - 0.00059 19.9 0.0 0.0034 17.5 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IlvN PF07991.7 gi|344213335|ref|YP_004797655.1| - 0.0014 17.9 0.0 0.0058 16.0 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|344213335|ref|YP_004797655.1| - 0.0016 18.0 0.1 0.005 16.4 0.0 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase F420_oxidored PF03807.12 gi|344213335|ref|YP_004797655.1| - 0.013 15.9 0.5 0.11 12.9 0.0 2.8 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|344213335|ref|YP_004797655.1| - 0.014 15.3 0.3 0.18 11.8 0.0 2.8 3 0 0 3 3 3 0 TrkA-N domain CBS PF00571.23 gi|344213337|ref|YP_004797657.1| - 1.5e-34 117.4 9.9 2.7e-09 36.6 0.1 4.1 4 0 0 4 4 4 4 CBS domain tRNA-synt_2b PF00587.20 gi|344213338|ref|YP_004797658.1| - 1.4e-54 184.3 0.0 1.9e-54 183.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|344213338|ref|YP_004797658.1| - 6.4e-21 74.1 0.0 1.6e-20 72.8 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain zinc_ribbon_4 PF13717.1 gi|344213338|ref|YP_004797658.1| - 0.035 13.7 0.6 5.6 6.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344213338|ref|YP_004797658.1| - 0.038 13.5 0.6 4.8 6.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|344213338|ref|YP_004797658.1| - 0.098 12.9 1.2 2.3 8.6 0.1 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar YjgP_YjgQ PF03739.9 gi|344213339|ref|YP_004797659.1| - 0.28 9.9 1.7 0.59 8.8 1.1 1.7 1 1 0 1 1 1 0 Predicted permease YjgP/YjgQ family ERCC4 PF02732.10 gi|344213340|ref|YP_004797660.1| - 3e-23 82.1 0.1 4.7e-22 78.2 0.0 2.6 2 0 0 2 2 2 1 ERCC4 domain Helicase_C PF00271.26 gi|344213340|ref|YP_004797660.1| - 5.1e-19 67.9 0.0 1.1e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|344213340|ref|YP_004797660.1| - 3.7e-17 62.3 0.0 1.8e-16 60.1 0.0 2.1 2 1 1 3 3 3 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|344213340|ref|YP_004797660.1| - 2.3e-11 43.3 0.2 6.8e-11 41.8 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|344213340|ref|YP_004797660.1| - 6.4e-11 42.2 0.9 2.9e-10 40.1 0.3 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|344213340|ref|YP_004797660.1| - 2e-10 40.8 0.0 6.1e-10 39.2 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|344213340|ref|YP_004797660.1| - 4e-07 29.3 0.6 5.1e-05 22.7 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.1 gi|344213340|ref|YP_004797660.1| - 0.0039 17.1 0.0 0.018 15.0 0.0 2.2 2 0 0 2 2 2 1 Helicase C-terminal domain 5_3_exonuc PF01367.15 gi|344213340|ref|YP_004797660.1| - 0.018 15.2 0.0 0.088 13.0 0.0 2.2 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold PUL PF08324.6 gi|344213340|ref|YP_004797660.1| - 0.029 13.1 0.0 0.12 11.1 0.0 1.8 2 0 0 2 2 2 0 PUL domain HMG_box_5 PF14887.1 gi|344213340|ref|YP_004797660.1| - 6.6 6.6 6.4 0.61 9.9 0.2 2.4 3 0 0 3 3 3 0 HMG (high mobility group) box 5 Auto_anti-p27 PF06677.7 gi|344213341|ref|YP_004797661.1| - 1.7e-19 69.2 0.5 2.5e-19 68.7 0.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|344213341|ref|YP_004797661.1| - 0.0018 18.1 0.8 0.23 11.4 0.0 2.5 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme DZR PF12773.2 gi|344213341|ref|YP_004797661.1| - 0.0051 16.6 1.5 0.011 15.5 1.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon FYVE_2 PF02318.11 gi|344213341|ref|YP_004797661.1| - 0.062 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 FYVE-type zinc finger zf-dskA_traR PF01258.12 gi|344213341|ref|YP_004797661.1| - 0.074 12.8 1.8 0.15 11.8 1.3 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|344213341|ref|YP_004797661.1| - 0.075 12.7 1.6 6.1 6.6 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal DUF3279 PF11682.3 gi|344213341|ref|YP_004797661.1| - 0.096 12.2 0.2 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) zinc-ribbons_6 PF07191.7 gi|344213341|ref|YP_004797661.1| - 0.11 12.3 0.4 0.19 11.5 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.1 gi|344213341|ref|YP_004797661.1| - 0.12 12.1 0.9 0.21 11.3 0.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|344213341|ref|YP_004797661.1| - 0.14 11.6 1.3 0.25 10.8 0.9 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|344213341|ref|YP_004797661.1| - 0.17 11.1 3.5 0.37 10.0 2.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF605 PF04652.11 gi|344213341|ref|YP_004797661.1| - 0.28 10.5 21.2 0.36 10.1 14.7 1.3 1 0 0 1 1 1 0 Vta1 like zinc_ribbon_2 PF13240.1 gi|344213341|ref|YP_004797661.1| - 1.4 8.5 5.0 6.4 6.3 3.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Acyl-CoA_dh_2 PF08028.6 gi|344213341|ref|YP_004797661.1| - 1.9 8.7 9.7 0.23 11.7 3.5 1.8 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain Ldh_1_N PF00056.18 gi|344213342|ref|YP_004797662.1| - 7.8e-39 132.7 0.2 1.1e-38 132.2 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|344213342|ref|YP_004797662.1| - 2.7e-33 115.1 0.0 4.3e-33 114.5 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain DUF2072 PF09845.4 gi|344213344|ref|YP_004797664.1| - 2.9e-29 101.6 0.2 5.7e-14 52.1 0.0 2.2 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|344213344|ref|YP_004797664.1| - 0.029 14.1 0.9 0.087 12.5 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-IS66 PF13005.2 gi|344213344|ref|YP_004797664.1| - 0.21 11.5 2.9 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|344213344|ref|YP_004797664.1| - 0.45 10.5 2.7 1.4 8.8 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|344213344|ref|YP_004797664.1| - 0.47 9.9 4.8 0.86 9.1 3.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2073 PF09846.4 gi|344213345|ref|YP_004797665.1| - 2.7e-47 158.7 0.7 3.3e-47 158.4 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|344213346|ref|YP_004797666.1| - 2.5e-15 56.4 0.0 3.4e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|344213346|ref|YP_004797666.1| - 1.7e-11 43.8 0.2 4.5e-05 22.9 0.0 2.8 1 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|344213346|ref|YP_004797666.1| - 8.8e-08 31.5 0.0 8e-05 21.9 0.0 2.7 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|344213346|ref|YP_004797666.1| - 1.3e-05 25.9 0.2 2.2e-05 25.2 0.2 1.6 1 1 0 1 1 1 1 AAA domain FeoB_N PF02421.13 gi|344213346|ref|YP_004797666.1| - 2.9e-05 23.4 0.4 0.0003 20.1 0.3 2.4 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_18 PF13238.1 gi|344213346|ref|YP_004797666.1| - 0.00011 22.4 0.0 0.00017 21.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|344213346|ref|YP_004797666.1| - 0.0002 21.8 0.0 0.00069 20.1 0.0 1.8 1 1 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|344213346|ref|YP_004797666.1| - 0.00025 20.3 0.0 0.12 11.5 0.0 2.2 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.13 gi|344213346|ref|YP_004797666.1| - 0.00033 19.7 0.0 0.00067 18.7 0.0 1.3 1 1 0 1 1 1 1 Septin Ras PF00071.17 gi|344213346|ref|YP_004797666.1| - 0.00057 19.3 0.0 0.17 11.2 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_28 PF13521.1 gi|344213346|ref|YP_004797666.1| - 0.00088 19.2 0.1 0.036 14.0 0.0 2.3 1 1 1 2 2 2 1 AAA domain Dynamin_N PF00350.18 gi|344213346|ref|YP_004797666.1| - 0.0016 18.2 0.0 0.14 11.9 0.0 2.3 1 1 1 2 2 2 1 Dynamin family AAA_22 PF13401.1 gi|344213346|ref|YP_004797666.1| - 0.0018 18.4 0.0 0.0036 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|344213346|ref|YP_004797666.1| - 0.0018 17.1 0.0 0.0055 15.5 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|344213346|ref|YP_004797666.1| - 0.0029 17.6 0.0 0.0044 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|344213346|ref|YP_004797666.1| - 0.0043 16.5 0.1 0.61 9.5 0.1 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|344213346|ref|YP_004797666.1| - 0.0057 16.8 0.0 0.02 15.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|344213346|ref|YP_004797666.1| - 0.0061 15.6 0.0 0.016 14.3 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin AAA_19 PF13245.1 gi|344213346|ref|YP_004797666.1| - 0.0072 16.0 0.2 0.048 13.4 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|344213346|ref|YP_004797666.1| - 0.011 15.8 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|344213346|ref|YP_004797666.1| - 0.037 13.7 0.0 0.059 13.0 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|344213346|ref|YP_004797666.1| - 0.038 14.3 0.0 0.062 13.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|344213346|ref|YP_004797666.1| - 0.04 12.6 0.1 1 8.0 0.0 2.6 2 1 0 2 2 2 0 ArgK protein MMR_HSR1_C PF08438.5 gi|344213346|ref|YP_004797666.1| - 0.047 13.9 0.0 0.13 12.4 0.0 1.7 2 0 0 2 2 2 0 GTPase of unknown function C-terminal RuvB_N PF05496.7 gi|344213346|ref|YP_004797666.1| - 0.047 12.7 0.0 0.08 11.9 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|344213346|ref|YP_004797666.1| - 0.053 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|344213346|ref|YP_004797666.1| - 0.073 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.4 gi|344213346|ref|YP_004797666.1| - 0.076 12.4 0.0 9.1 5.7 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|344213346|ref|YP_004797666.1| - 0.088 12.5 0.0 0.23 11.1 0.0 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|344213346|ref|YP_004797666.1| - 0.089 12.1 0.0 0.18 11.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain HGD-D PF06050.8 gi|344213346|ref|YP_004797666.1| - 0.099 11.4 0.0 0.27 10.0 0.0 1.9 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Parvo_NS1 PF01057.12 gi|344213346|ref|YP_004797666.1| - 0.14 10.9 0.0 0.25 10.1 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|344213346|ref|YP_004797666.1| - 0.18 11.3 1.4 0.41 10.2 1.0 1.8 1 1 0 1 1 1 0 AAA domain