# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|344209943|ref|YP_004786119.1| - 5e-22 77.7 0.0 1.7e-21 76.0 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|344209943|ref|YP_004786119.1| - 3.3e-10 40.4 0.0 7.6e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209943|ref|YP_004786119.1| - 1.2e-09 38.8 0.3 1.4e-08 35.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain DUF815 PF05673.13 gi|344209943|ref|YP_004786119.1| - 0.0021 17.3 0.0 0.0035 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.29 gi|344209943|ref|YP_004786119.1| - 0.0053 17.2 0.0 0.013 15.9 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|344209943|ref|YP_004786119.1| - 0.0072 16.3 0.0 0.015 15.2 0.0 1.5 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|344209943|ref|YP_004786119.1| - 0.0088 16.0 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|344209943|ref|YP_004786119.1| - 0.035 14.5 0.0 0.072 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|344209943|ref|YP_004786119.1| - 0.054 13.0 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DEAD PF00270.29 gi|344209943|ref|YP_004786119.1| - 0.083 12.7 0.3 5.4 6.8 0.0 2.3 1 1 1 2 2 2 0 DEAD/DEAH box helicase HalOD1 PF18545.1 gi|344209944|ref|YP_004786120.1| - 5.1e-15 55.5 0.3 6.5e-15 55.2 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Hemopexin PF00045.19 gi|344209945|ref|YP_004786121.1| - 0.011 15.6 1.1 0.11 12.5 0.5 2.5 2 0 0 2 2 2 0 Hemopexin TnpW PF14202.6 gi|344209945|ref|YP_004786121.1| - 0.29 11.0 0.5 0.6 10.0 0.5 1.5 1 0 0 1 1 1 0 Transposon-encoded protein TnpW TetR_C_6 PF13977.6 gi|344209946|ref|YP_004786122.1| - 3.8e-13 49.7 0.2 4.3e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_C_31 PF17940.1 gi|344209946|ref|YP_004786122.1| - 6.9e-06 26.2 0.0 8.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344209946|ref|YP_004786122.1| - 1.3e-05 25.2 0.1 1.7e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|344209946|ref|YP_004786122.1| - 0.00017 21.8 0.3 0.00032 21.0 0.1 1.6 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|344209946|ref|YP_004786122.1| - 0.003 17.6 0.1 0.004 17.2 0.1 1.3 1 0 0 1 1 1 1 AefR-like transcriptional repressor, C-terminal domain TetR_C_17 PF17922.1 gi|344209946|ref|YP_004786122.1| - 0.049 13.7 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain CARDB PF07705.11 gi|344209947|ref|YP_004786123.1| - 1.5e-14 54.0 25.7 0.0023 18.1 0.1 5.5 5 0 0 5 5 5 5 CARDB NPCBM_assoc PF10633.9 gi|344209947|ref|YP_004786123.1| - 1.7e-13 50.6 18.6 9.5e-05 22.6 0.4 7.9 6 3 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|344209947|ref|YP_004786123.1| - 3.2e-07 30.5 37.6 0.069 13.5 1.2 7.0 5 3 0 5 5 5 5 Domain of unknown function DUF11 ASH PF15780.5 gi|344209947|ref|YP_004786123.1| - 1.5e-05 25.1 10.6 0.066 13.4 0.0 5.3 5 1 0 5 5 5 2 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Fn3-like PF14310.6 gi|344209947|ref|YP_004786123.1| - 5.5e-05 23.2 12.5 0.95 9.6 0.2 7.3 9 0 0 9 9 8 1 Fibronectin type III-like domain N_BRCA1_IG PF16158.5 gi|344209947|ref|YP_004786123.1| - 0.00017 22.3 2.3 5.7 7.7 0.1 5.2 6 0 0 6 6 6 1 Ig-like domain from next to BRCA1 gene Transglut_C PF00927.22 gi|344209947|ref|YP_004786123.1| - 0.00094 19.3 0.2 12 6.1 0.0 4.5 5 0 0 5 5 5 1 Transglutaminase family, C-terminal ig like domain DUF4832 PF16116.5 gi|344209947|ref|YP_004786123.1| - 0.0028 17.5 4.9 11 5.7 0.0 4.9 4 1 1 5 5 5 1 Domain of unknown function (DUF4832) FAS_meander PF17951.1 gi|344209947|ref|YP_004786123.1| - 0.025 14.4 0.0 0.14 11.9 0.0 2.3 1 0 0 1 1 1 0 Fatty acid synthase meander beta sheet domain AP3B1_C PF14796.6 gi|344209947|ref|YP_004786123.1| - 0.032 14.5 3.3 0.24 11.6 0.0 3.2 4 0 0 4 4 4 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal BppU_N PF10651.9 gi|344209947|ref|YP_004786123.1| - 0.036 13.8 0.5 0.13 12.0 0.1 2.1 2 0 0 2 2 2 0 BppU N-terminal domain Alpha_adaptinC2 PF02883.20 gi|344209947|ref|YP_004786123.1| - 0.04 14.2 1.1 2.2 8.6 0.0 3.1 3 0 0 3 3 3 0 Adaptin C-terminal domain MBG PF17883.1 gi|344209947|ref|YP_004786123.1| - 0.056 14.0 0.4 0.056 14.0 0.4 4.9 4 2 1 5 5 5 0 MBG domain Pilin PF00114.19 gi|344209947|ref|YP_004786123.1| - 3.7 8.5 19.1 6.5 7.7 0.1 5.1 5 0 0 5 5 5 0 Pilin (bacterial filament) MMPL PF03176.15 gi|344209948|ref|YP_004786124.1| - 2e-27 96.0 26.0 4.7e-20 71.8 1.7 2.7 2 1 0 2 2 2 2 MMPL family Patched PF02460.18 gi|344209948|ref|YP_004786124.1| - 8.5e-08 30.8 12.8 5.8e-07 28.0 5.9 2.4 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|344209948|ref|YP_004786124.1| - 1.2e-06 28.4 4.4 0.00032 20.6 0.5 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation TetR_C_6 PF13977.6 gi|344209949|ref|YP_004786125.1| - 2.8e-13 50.1 0.0 4.2e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344209949|ref|YP_004786125.1| - 1.4e-10 40.8 0.6 5.4e-10 38.9 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|344209949|ref|YP_004786125.1| - 0.00025 21.3 0.3 0.00056 20.1 0.2 1.7 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344209949|ref|YP_004786125.1| - 0.016 15.3 0.2 0.032 14.3 0.2 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|344209949|ref|YP_004786125.1| - 0.018 15.0 0.2 0.028 14.5 0.2 1.2 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_29 PF17938.1 gi|344209949|ref|YP_004786125.1| - 0.04 14.0 0.4 0.089 12.9 0.0 1.8 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_36 PF18598.1 gi|344209949|ref|YP_004786125.1| - 0.053 13.5 0.2 0.17 11.9 0.1 1.8 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HTH_38 PF13936.6 gi|344209949|ref|YP_004786125.1| - 0.055 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_C_37 PF18665.1 gi|344209949|ref|YP_004786125.1| - 0.083 13.5 0.1 0.21 12.2 0.0 1.7 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain LUD_dom PF02589.15 gi|344209950|ref|YP_004786126.1| - 8.4e-40 136.5 0.1 1e-39 136.2 0.1 1.2 1 0 0 1 1 1 1 LUD domain OKR_DC_1_N PF03709.15 gi|344209950|ref|YP_004786126.1| - 0.016 15.5 0.1 0.044 14.1 0.1 1.8 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain YcaO PF02624.16 gi|344209950|ref|YP_004786126.1| - 0.025 13.8 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 YcaO cyclodehydratase, ATP-ad Mg2+-binding Secretin_N PF03958.17 gi|344209950|ref|YP_004786126.1| - 0.027 14.9 1.0 0.096 13.1 0.7 2.2 1 1 1 2 2 2 0 Bacterial type II/III secretion system short domain UPF0180 PF03698.13 gi|344209950|ref|YP_004786126.1| - 0.036 14.2 0.1 0.096 12.9 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) RsgA_GTPase PF03193.16 gi|344209950|ref|YP_004786126.1| - 0.037 13.9 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase CHASE2 PF05226.11 gi|344209950|ref|YP_004786126.1| - 0.06 13.0 0.1 0.061 13.0 0.1 1.2 1 0 0 1 1 1 0 CHASE2 domain PrpR_N PF06506.11 gi|344209950|ref|YP_004786126.1| - 0.071 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Propionate catabolism activator Peripla_BP_2 PF01497.18 gi|344209951|ref|YP_004786127.1| - 4.4e-13 49.3 0.0 2.8e-12 46.7 0.0 1.9 2 0 0 2 2 2 1 Periplasmic binding protein FecCD PF01032.18 gi|344209952|ref|YP_004786128.1| - 2e-84 283.2 34.6 2.6e-84 282.9 34.6 1.2 1 0 0 1 1 1 1 FecCD transport family PT-VENN PF04829.13 gi|344209952|ref|YP_004786128.1| - 0.26 11.4 6.7 0.56 10.3 0.1 3.6 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif ABC_tran PF00005.27 gi|344209953|ref|YP_004786129.1| - 8.9e-30 104.0 0.0 1.3e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209953|ref|YP_004786129.1| - 3.7e-13 49.9 1.9 5.4e-06 26.4 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209953|ref|YP_004786129.1| - 5.9e-13 48.8 0.2 1.4e-06 27.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344209953|ref|YP_004786129.1| - 4.5e-07 29.9 0.0 6.6e-05 22.8 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344209953|ref|YP_004786129.1| - 5.5e-07 29.2 0.0 1.4e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|344209953|ref|YP_004786129.1| - 2.6e-05 23.2 1.3 0.047 12.5 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|344209953|ref|YP_004786129.1| - 7.6e-05 23.0 0.2 0.00045 20.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|344209953|ref|YP_004786129.1| - 0.00011 22.6 0.1 0.00024 21.5 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|344209953|ref|YP_004786129.1| - 0.00023 20.8 0.3 0.013 15.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|344209953|ref|YP_004786129.1| - 0.00036 21.1 0.0 0.00061 20.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344209953|ref|YP_004786129.1| - 0.0031 17.3 0.1 0.006 16.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344209953|ref|YP_004786129.1| - 0.0068 16.6 0.1 0.021 15.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|344209953|ref|YP_004786129.1| - 0.013 15.6 0.1 0.44 10.6 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase TniB PF05621.11 gi|344209953|ref|YP_004786129.1| - 0.014 14.9 0.1 0.45 9.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein MukB PF04310.12 gi|344209953|ref|YP_004786129.1| - 0.016 15.1 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_28 PF13521.6 gi|344209953|ref|YP_004786129.1| - 0.017 15.4 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|344209953|ref|YP_004786129.1| - 0.019 14.9 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|344209953|ref|YP_004786129.1| - 0.02 14.8 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|344209953|ref|YP_004786129.1| - 0.027 14.5 0.0 0.083 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|344209953|ref|YP_004786129.1| - 0.03 13.1 0.0 1.2 7.9 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATP_bind_1 PF03029.17 gi|344209953|ref|YP_004786129.1| - 0.032 14.0 0.1 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|344209953|ref|YP_004786129.1| - 0.039 14.4 0.1 0.14 12.6 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|344209953|ref|YP_004786129.1| - 0.063 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|344209953|ref|YP_004786129.1| - 0.072 13.5 0.0 0.22 11.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase ATPase_2 PF01637.18 gi|344209953|ref|YP_004786129.1| - 0.073 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|344209953|ref|YP_004786129.1| - 0.08 12.2 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|344209953|ref|YP_004786129.1| - 0.096 12.4 0.2 0.27 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|344209953|ref|YP_004786129.1| - 0.098 12.2 0.2 0.19 11.3 0.2 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|344209953|ref|YP_004786129.1| - 0.1 12.5 0.2 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|344209953|ref|YP_004786129.1| - 0.15 12.1 0.0 0.38 10.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) VirE PF05272.11 gi|344209953|ref|YP_004786129.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Virulence-associated protein E AAA_18 PF13238.6 gi|344209953|ref|YP_004786129.1| - 0.17 12.4 0.0 0.47 11.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain PAPS_reduct PF01507.19 gi|344209953|ref|YP_004786129.1| - 0.2 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family SBF PF01758.16 gi|344209954|ref|YP_004786130.1| - 7.1e-38 130.2 10.5 9.9e-38 129.8 10.5 1.2 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|344209954|ref|YP_004786130.1| - 6.5e-14 52.0 8.3 9.1e-14 51.5 8.3 1.3 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) CBP_BcsF PF11120.8 gi|344209954|ref|YP_004786130.1| - 0.045 13.9 0.3 0.15 12.2 0.3 2.0 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF Mem_trans PF03547.18 gi|344209954|ref|YP_004786130.1| - 0.2 10.0 9.2 0.014 13.9 3.3 1.9 1 1 1 2 2 2 0 Membrane transport protein Bestrophin PF01062.21 gi|344209954|ref|YP_004786130.1| - 0.22 10.8 0.9 0.47 9.8 0.9 1.5 1 0 0 1 1 1 0 Bestrophin, RFP-TM, chloride channel Bac_export_2 PF01312.19 gi|344209954|ref|YP_004786130.1| - 0.51 9.5 4.0 0.93 8.6 4.0 1.4 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family UbiA PF01040.18 gi|344209955|ref|YP_004786131.1| - 5.2e-16 58.7 18.9 7.7e-16 58.1 18.9 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family HisKA_7TM PF16927.5 gi|344209956|ref|YP_004786132.1| - 3.3e-52 177.7 16.0 4.2e-52 177.4 16.0 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|344209956|ref|YP_004786132.1| - 4.2e-13 49.8 0.1 8e-13 48.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|344209956|ref|YP_004786132.1| - 9.5e-06 25.6 0.1 2e-05 24.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|344209956|ref|YP_004786132.1| - 0.00061 20.0 0.1 0.0034 17.6 0.1 2.2 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344209956|ref|YP_004786132.1| - 0.0008 19.4 0.0 0.0037 17.3 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.7 gi|344209956|ref|YP_004786132.1| - 0.0016 18.6 0.0 0.0058 16.9 0.0 1.9 1 1 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344209956|ref|YP_004786132.1| - 0.0038 17.2 0.1 0.013 15.5 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_10 PF13596.6 gi|344209956|ref|YP_004786132.1| - 0.015 15.9 0.0 0.056 14.0 0.0 2.0 1 1 1 2 2 2 0 PAS domain HATPase_c_3 PF13589.6 gi|344209956|ref|YP_004786132.1| - 0.041 13.7 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TusA PF01206.17 gi|344209957|ref|YP_004786133.1| - 7.9e-07 28.8 0.0 1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2270 PF10028.9 gi|344209958|ref|YP_004786134.1| - 3.9e-74 248.2 4.9 4.6e-74 248.0 4.9 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Acyl_transf_3 PF01757.22 gi|344209958|ref|YP_004786134.1| - 0.025 13.6 0.2 0.025 13.6 0.2 2.0 2 0 0 2 2 2 0 Acyltransferase family Jnk-SapK_ap_N PF09744.9 gi|344209959|ref|YP_004786135.1| - 0.00011 22.4 17.3 0.00013 22.2 17.3 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 Atg14 PF10186.9 gi|344209959|ref|YP_004786135.1| - 0.0014 17.7 10.1 0.0018 17.4 10.1 1.0 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Tho2 PF11262.8 gi|344209959|ref|YP_004786135.1| - 0.0017 17.6 8.3 0.0019 17.4 8.3 1.0 1 0 0 1 1 1 1 Transcription factor/nuclear export subunit protein 2 Golgin_A5 PF09787.9 gi|344209959|ref|YP_004786135.1| - 0.0024 17.4 14.2 0.0031 17.0 14.2 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 ERM PF00769.19 gi|344209959|ref|YP_004786135.1| - 0.0083 16.0 15.4 0.01 15.6 15.4 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family PEARLI-4 PF05278.12 gi|344209959|ref|YP_004786135.1| - 0.019 14.5 6.3 0.026 14.1 6.3 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) ADIP PF11559.8 gi|344209959|ref|YP_004786135.1| - 0.028 14.5 16.7 0.037 14.1 16.7 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding YabA PF06156.13 gi|344209959|ref|YP_004786135.1| - 0.036 14.7 13.9 0.83 10.3 13.9 2.2 1 1 0 1 1 1 0 Initiation control protein YabA DUF3450 PF11932.8 gi|344209959|ref|YP_004786135.1| - 0.044 13.1 10.0 0.05 12.9 10.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) KASH_CCD PF14662.6 gi|344209959|ref|YP_004786135.1| - 0.046 13.6 15.5 0.06 13.2 15.5 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH GBP_C PF02841.14 gi|344209959|ref|YP_004786135.1| - 0.053 12.9 13.0 0.063 12.7 13.0 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF3552 PF12072.8 gi|344209959|ref|YP_004786135.1| - 0.067 12.6 16.2 0.08 12.3 16.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) RasGAP_C PF03836.15 gi|344209959|ref|YP_004786135.1| - 0.069 13.3 5.8 0.077 13.1 5.8 1.1 1 0 0 1 1 1 0 RasGAP C-terminus Fez1 PF06818.15 gi|344209959|ref|YP_004786135.1| - 0.1 13.1 12.5 0.12 12.8 12.5 1.1 1 0 0 1 1 1 0 Fez1 Thioesterase PF00975.20 gi|344209959|ref|YP_004786135.1| - 0.11 12.6 0.8 0.14 12.3 0.8 1.0 1 0 0 1 1 1 0 Thioesterase domain DivIVA PF05103.13 gi|344209959|ref|YP_004786135.1| - 0.11 12.6 13.7 0.14 12.2 13.7 1.1 1 0 0 1 1 1 0 DivIVA protein UPF0242 PF06785.11 gi|344209959|ref|YP_004786135.1| - 0.11 12.5 14.0 0.15 12.2 14.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 gi|344209959|ref|YP_004786135.1| - 0.13 11.1 14.6 0.16 10.8 14.6 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein Fungal_TACC PF12709.7 gi|344209959|ref|YP_004786135.1| - 0.14 12.6 12.0 0.16 12.4 2.8 2.5 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins MAT1 PF06391.13 gi|344209959|ref|YP_004786135.1| - 0.17 11.7 11.3 0.2 11.4 11.3 1.1 1 0 0 1 1 1 0 CDK-activating kinase assembly factor MAT1 TMPIT PF07851.13 gi|344209959|ref|YP_004786135.1| - 0.2 10.9 7.7 0.24 10.6 7.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF641 PF04859.12 gi|344209959|ref|YP_004786135.1| - 0.2 12.0 10.2 0.21 11.9 9.5 1.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) KxDL PF10241.9 gi|344209959|ref|YP_004786135.1| - 0.22 11.8 11.2 0.11 12.7 6.9 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein FUSC PF04632.12 gi|344209959|ref|YP_004786135.1| - 0.3 9.5 4.7 0.35 9.3 4.7 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3584 PF12128.8 gi|344209959|ref|YP_004786135.1| - 0.37 8.2 13.4 0.43 8.0 13.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF4407 PF14362.6 gi|344209959|ref|YP_004786135.1| - 0.38 10.1 9.4 0.49 9.7 9.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|344209959|ref|YP_004786135.1| - 0.39 10.2 6.6 0.45 10.0 6.6 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Flu_NS2 PF00601.19 gi|344209959|ref|YP_004786135.1| - 0.48 10.8 3.7 0.99 9.7 3.7 1.6 1 1 0 1 1 1 0 Influenza non-structural protein (NS2) Lectin_N PF03954.14 gi|344209959|ref|YP_004786135.1| - 0.49 10.1 5.7 0.73 9.6 5.7 1.3 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain Fmp27_WPPW PF10359.9 gi|344209959|ref|YP_004786135.1| - 0.51 9.1 9.7 0.58 8.9 9.7 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.12 gi|344209959|ref|YP_004786135.1| - 0.63 10.1 10.2 2.7 8.0 9.8 1.8 1 1 1 2 2 2 0 Laminin Domain II Pup PF05639.11 gi|344209959|ref|YP_004786135.1| - 0.65 10.9 7.4 0.61 11.0 5.5 2.0 1 1 1 2 2 1 0 Pup-like protein Bap31_Bap29_C PF18035.1 gi|344209959|ref|YP_004786135.1| - 1.1 9.3 10.9 5.4 7.1 10.3 2.2 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain TolA_bind_tri PF16331.5 gi|344209959|ref|YP_004786135.1| - 1.2 9.3 15.2 2.1 8.5 8.5 2.4 1 1 1 2 2 2 0 TolA binding protein trimerisation FapA PF03961.13 gi|344209959|ref|YP_004786135.1| - 1.2 7.6 7.3 1.4 7.5 7.3 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A ZapB PF06005.12 gi|344209959|ref|YP_004786135.1| - 1.6 9.3 23.1 0.79 10.2 13.9 2.3 1 1 1 2 2 2 0 Cell division protein ZapB PRKG1_interact PF15898.5 gi|344209959|ref|YP_004786135.1| - 1.8 9.5 17.7 5.8 7.9 17.7 1.9 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain CorA PF01544.18 gi|344209959|ref|YP_004786135.1| - 2.2 7.5 6.2 2.9 7.1 6.2 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DivIC PF04977.15 gi|344209959|ref|YP_004786135.1| - 2.3 8.0 16.5 0.41 10.4 5.9 2.4 1 1 1 2 2 2 0 Septum formation initiator NYD-SP28_assoc PF14775.6 gi|344209959|ref|YP_004786135.1| - 2.8 8.1 10.1 0.34 11.1 2.1 2.4 2 1 0 2 2 2 0 Sperm tail C-terminal domain DUF2570 PF10828.8 gi|344209959|ref|YP_004786135.1| - 2.9 7.7 8.8 1.8 8.4 6.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2570) Csm1_N PF18504.1 gi|344209959|ref|YP_004786135.1| - 3.4 8.1 15.7 6.1 7.3 4.6 2.2 1 1 1 2 2 2 0 Csm1 N-terminal domain APG6_N PF17675.1 gi|344209959|ref|YP_004786135.1| - 3.5 8.2 23.5 18 5.8 23.5 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region NPV_P10 PF05531.12 gi|344209959|ref|YP_004786135.1| - 3.7 8.1 5.6 32 5.1 4.5 2.5 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Ax_dynein_light PF10211.9 gi|344209959|ref|YP_004786135.1| - 4.9 7.0 17.9 3.2 7.7 13.7 1.9 1 1 1 2 2 2 0 Axonemal dynein light chain Mt_ATP-synt_B PF05405.14 gi|344209959|ref|YP_004786135.1| - 5.5 6.6 10.9 6.3 6.4 9.1 1.7 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Macoilin PF09726.9 gi|344209959|ref|YP_004786135.1| - 5.5 5.4 14.1 6.5 5.2 14.1 1.0 1 0 0 1 1 1 0 Macoilin family MctB PF11382.8 gi|344209959|ref|YP_004786135.1| - 6.7 6.3 11.1 0.62 9.7 4.2 1.9 1 1 1 2 2 2 0 Copper transport outer membrane protein, MctB CENP-H PF05837.12 gi|344209959|ref|YP_004786135.1| - 7 7.1 18.4 1.2 9.6 9.4 2.0 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Cnn_1N PF07989.11 gi|344209959|ref|YP_004786135.1| - 8 6.7 17.3 5.7 7.2 14.8 2.0 2 1 0 2 2 1 0 Centrosomin N-terminal motif 1 Spc24 PF08286.11 gi|344209959|ref|YP_004786135.1| - 8 6.8 19.3 2.5 8.4 8.4 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Phage_integrase PF00589.22 gi|344209960|ref|YP_004786136.1| - 1.6e-06 28.0 0.0 3.4e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family AAA_31 PF13614.6 gi|344209961|ref|YP_004786137.1| - 5.7e-22 78.5 0.0 9.1e-22 77.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|344209961|ref|YP_004786137.1| - 6.1e-16 58.6 0.0 1.3e-15 57.6 0.0 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|344209961|ref|YP_004786137.1| - 4.9e-08 32.7 0.0 2.3e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|344209961|ref|YP_004786137.1| - 5e-07 29.2 0.0 1.1e-05 24.8 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|344209961|ref|YP_004786137.1| - 8.5e-07 28.5 0.0 0.00025 20.4 0.0 2.5 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|344209961|ref|YP_004786137.1| - 2.9e-06 27.0 0.0 5.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|344209961|ref|YP_004786137.1| - 0.00082 18.9 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|344209961|ref|YP_004786137.1| - 0.024 14.2 0.2 0.08 12.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|344209961|ref|YP_004786137.1| - 0.097 12.5 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_24 PF13479.6 gi|344209961|ref|YP_004786137.1| - 0.12 12.0 0.1 0.54 10.0 0.0 2.1 2 2 0 2 2 2 0 AAA domain DUF2999 PF11212.8 gi|344209962|ref|YP_004786138.1| - 0.13 12.5 0.0 0.53 10.6 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2999) IclR PF01614.18 gi|344209963|ref|YP_004786139.1| - 2.6e-36 124.3 0.1 6.4e-36 123.0 0.1 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344209963|ref|YP_004786139.1| - 1.6e-07 31.0 0.0 3.6e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|344209963|ref|YP_004786139.1| - 9.9e-07 28.2 0.0 1.9e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|344209963|ref|YP_004786139.1| - 5.5e-05 23.1 0.0 0.00034 20.5 0.0 2.2 2 1 1 3 3 3 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|344209963|ref|YP_004786139.1| - 0.00022 21.1 0.0 0.00085 19.2 0.0 2.0 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344209963|ref|YP_004786139.1| - 0.00053 19.8 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|344209963|ref|YP_004786139.1| - 0.0022 17.9 0.0 0.019 14.9 0.0 2.4 1 1 1 2 2 2 1 MarR family HTH_27 PF13463.6 gi|344209963|ref|YP_004786139.1| - 0.0027 18.1 0.1 0.011 16.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|344209963|ref|YP_004786139.1| - 0.0035 17.3 0.1 0.013 15.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|344209963|ref|YP_004786139.1| - 0.0035 17.4 0.0 0.01 15.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain ANAPC2 PF08672.11 gi|344209963|ref|YP_004786139.1| - 0.0036 17.8 0.0 0.013 16.0 0.0 2.0 2 0 0 2 2 2 1 Anaphase promoting complex (APC) subunit 2 HTH_DeoR PF08220.12 gi|344209963|ref|YP_004786139.1| - 0.064 13.0 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PqqD PF05402.12 gi|344209963|ref|YP_004786139.1| - 0.071 13.4 0.1 5.2 7.5 0.0 2.6 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_10 PF04967.12 gi|344209963|ref|YP_004786139.1| - 0.093 12.6 0.0 0.58 10.0 0.0 2.3 1 1 1 2 2 2 0 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|344209963|ref|YP_004786139.1| - 0.097 12.8 0.1 0.64 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase TAF8_C PF10406.9 gi|344209963|ref|YP_004786139.1| - 0.11 13.1 0.7 4.3 8.0 0.2 2.7 2 0 0 2 2 2 0 Transcription factor TFIID complex subunit 8 C-term Rrf2 PF02082.20 gi|344209963|ref|YP_004786139.1| - 0.12 12.8 0.0 0.4 11.1 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator Na_H_antiporter PF03553.14 gi|344209964|ref|YP_004786140.1| - 4.8e-55 186.9 45.9 1.2e-50 172.5 26.0 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Reticulon PF02453.17 gi|344209964|ref|YP_004786140.1| - 0.12 12.3 3.9 0.32 10.9 0.0 3.0 3 0 0 3 3 3 0 Reticulon DUF4864 PF16156.5 gi|344209965|ref|YP_004786141.1| - 8e-10 39.3 0.0 1.3e-09 38.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4864) DUF3592 PF12158.8 gi|344209967|ref|YP_004786143.1| - 9e-26 90.7 9.6 2.8e-25 89.1 9.4 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3592) DUF3318 PF11780.8 gi|344209967|ref|YP_004786143.1| - 0.017 15.0 0.0 0.84 9.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) DUF2189 PF09955.9 gi|344209967|ref|YP_004786143.1| - 0.089 13.0 2.6 0.089 13.0 0.9 1.8 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2189) Hydantoinase_B PF02538.14 gi|344209968|ref|YP_004786144.1| - 2.2e-202 673.1 2.9 2.4e-202 672.9 2.9 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|344209969|ref|YP_004786145.1| - 1.4e-98 329.7 11.2 3.3e-98 328.5 5.3 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|344209969|ref|YP_004786145.1| - 8.4e-51 172.2 1.9 4e-50 170.0 0.2 2.3 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|344209969|ref|YP_004786145.1| - 0.0026 16.4 5.7 0.026 13.1 0.4 2.6 3 0 0 3 3 3 2 MutL protein FtsA PF14450.6 gi|344209969|ref|YP_004786145.1| - 0.45 11.0 2.8 3.2 8.2 0.3 2.8 2 1 0 2 2 2 0 Cell division protein FtsA Nramp PF01566.18 gi|344209970|ref|YP_004786146.1| - 2e-97 326.4 24.4 2.5e-97 326.1 24.4 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein LPD14 PF18827.1 gi|344209970|ref|YP_004786146.1| - 0.16 12.3 2.4 37 4.6 0.1 3.7 2 2 2 4 4 4 0 Large polyvalent protein-associated domain 14 RHH_1 PF01402.21 gi|344209971|ref|YP_004786147.1| - 6e-11 41.9 1.4 9.9e-11 41.2 0.2 2.0 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|344209971|ref|YP_004786147.1| - 5.5e-05 23.0 0.1 0.00014 21.8 0.1 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|344209971|ref|YP_004786147.1| - 0.003 18.3 0.5 0.015 16.0 0.2 2.0 1 1 1 2 2 2 1 Rv0623-like transcription factor PUB PF09409.10 gi|344209971|ref|YP_004786147.1| - 0.015 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 PUB domain TraY PF05509.11 gi|344209971|ref|YP_004786147.1| - 0.027 14.5 0.3 0.1 12.7 0.1 1.9 2 0 0 2 2 2 0 TraY domain RHH_5 PF07878.11 gi|344209971|ref|YP_004786147.1| - 0.074 13.0 0.1 0.18 11.7 0.1 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 ELFV_dehydrog PF00208.21 gi|344209972|ref|YP_004786148.1| - 7.7e-72 241.9 0.1 9.9e-72 241.6 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|344209972|ref|YP_004786148.1| - 6.6e-53 178.0 0.0 1e-52 177.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|344209972|ref|YP_004786148.1| - 0.00064 19.1 0.1 0.0013 18.2 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|344209972|ref|YP_004786148.1| - 0.0016 17.3 0.0 0.0022 16.8 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase IlvN PF07991.12 gi|344209972|ref|YP_004786148.1| - 0.028 14.0 0.1 0.045 13.3 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|344209972|ref|YP_004786148.1| - 0.042 13.1 0.1 0.074 12.3 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain BAT PF15915.5 gi|344209974|ref|YP_004786150.1| - 7.8e-37 126.6 9.3 7.8e-37 126.6 9.3 2.8 3 0 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|344209974|ref|YP_004786150.1| - 4.3e-26 91.8 5.0 6.1e-19 68.7 0.1 3.4 4 0 0 4 4 4 2 GAF domain HTH_10 PF04967.12 gi|344209974|ref|YP_004786150.1| - 4.3e-18 64.8 0.0 1.4e-17 63.2 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|344209974|ref|YP_004786150.1| - 2.2e-13 50.4 4.3 3.4e-09 36.9 0.7 3.7 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.6 gi|344209974|ref|YP_004786150.1| - 4.8e-13 49.6 0.2 9e-05 22.8 0.0 3.5 3 0 0 3 3 3 2 GAF domain Response_reg PF00072.24 gi|344209974|ref|YP_004786150.1| - 3.5e-10 40.0 0.1 1.7e-09 37.8 0.0 2.2 2 0 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|344209974|ref|YP_004786150.1| - 5.5e-09 36.8 1.5 0.0011 19.7 0.0 3.4 3 0 0 3 3 3 2 GAF domain PAS_9 PF13426.7 gi|344209974|ref|YP_004786150.1| - 8e-09 35.7 1.7 2.7e-05 24.3 0.0 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.25 gi|344209974|ref|YP_004786150.1| - 8.7e-06 25.7 5.6 0.047 13.7 0.1 3.7 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|344209974|ref|YP_004786150.1| - 0.062 13.3 0.4 0.9 9.6 0.1 3.1 3 0 0 3 3 3 0 PAS domain PAS_7 PF12860.7 gi|344209974|ref|YP_004786150.1| - 0.36 11.0 7.3 0.56 10.4 0.0 4.2 4 2 0 4 4 4 0 PAS fold zf-C2HC5 PF06221.13 gi|344209975|ref|YP_004786151.1| - 0.00027 20.8 0.2 0.0003 20.7 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|344209975|ref|YP_004786151.1| - 0.002 18.1 1.4 0.0022 18.0 1.4 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.11 gi|344209975|ref|YP_004786151.1| - 0.0083 16.2 1.0 0.0093 16.0 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.10 gi|344209975|ref|YP_004786151.1| - 0.01 15.9 3.3 0.018 15.1 3.3 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|344209975|ref|YP_004786151.1| - 0.015 14.7 1.6 0.024 14.0 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|344209975|ref|YP_004786151.1| - 0.024 14.8 0.4 0.027 14.6 0.4 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|344209975|ref|YP_004786151.1| - 0.069 13.2 1.0 0.071 13.1 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_pol_N PF01194.17 gi|344209975|ref|YP_004786151.1| - 0.11 12.8 1.0 0.16 12.3 1.0 1.4 1 1 0 1 1 1 0 RNA polymerases N / 8 kDa subunit YhfH PF14149.6 gi|344209975|ref|YP_004786151.1| - 0.15 12.0 5.2 2.6 8.1 3.8 2.1 1 1 1 2 2 2 0 YhfH-like protein ELFV_dehydrog PF00208.21 gi|344209976|ref|YP_004786152.1| - 3.9e-71 239.6 0.1 4.8e-71 239.3 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|344209976|ref|YP_004786152.1| - 1.5e-56 189.9 0.0 2.4e-56 189.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|344209976|ref|YP_004786152.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|344209976|ref|YP_004786152.1| - 0.017 14.7 0.0 0.031 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|344209976|ref|YP_004786152.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Gp_dh_N PF00044.24 gi|344209976|ref|YP_004786152.1| - 0.18 12.2 0.0 0.51 10.7 0.0 1.9 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PAS_4 PF08448.10 gi|344209977|ref|YP_004786153.1| - 1.4e-52 176.5 15.5 3.9e-14 52.8 0.0 7.0 5 3 1 6 6 6 5 PAS fold PAS PF00989.25 gi|344209977|ref|YP_004786153.1| - 8.5e-37 125.6 4.6 5.3e-17 61.9 0.0 5.6 5 1 0 5 5 5 4 PAS fold PAS_9 PF13426.7 gi|344209977|ref|YP_004786153.1| - 2.2e-31 108.2 3.7 2e-12 47.3 0.0 6.0 6 0 0 6 6 6 4 PAS domain PAS_8 PF13188.7 gi|344209977|ref|YP_004786153.1| - 3.9e-20 71.4 1.8 1.6e-06 28.0 0.0 5.8 6 0 0 6 6 5 4 PAS domain PAS_3 PF08447.12 gi|344209977|ref|YP_004786153.1| - 1.1e-19 70.4 0.4 2.3e-09 37.4 0.1 3.9 4 0 0 4 4 4 2 PAS fold GAF_2 PF13185.6 gi|344209977|ref|YP_004786153.1| - 1e-17 64.7 12.2 7e-10 39.3 0.8 5.3 6 0 0 6 6 6 2 GAF domain GAF_3 PF13492.6 gi|344209977|ref|YP_004786153.1| - 3.2e-17 63.1 0.1 1.5e-09 38.3 0.0 4.3 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.26 gi|344209977|ref|YP_004786153.1| - 1.1e-14 54.9 0.0 2.4e-14 53.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|344209977|ref|YP_004786153.1| - 5.1e-13 48.9 6.4 5.2e-13 48.8 0.4 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|344209977|ref|YP_004786153.1| - 1.1e-12 48.2 0.1 4.1e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|344209977|ref|YP_004786153.1| - 6.2e-09 36.6 0.1 9.5e-07 29.5 0.0 3.6 3 0 0 3 3 3 1 GAF domain PAS_10 PF13596.6 gi|344209977|ref|YP_004786153.1| - 0.063 13.9 0.0 1.3 9.6 0.0 3.1 3 0 0 3 3 3 0 PAS domain MCU PF04678.13 gi|344209977|ref|YP_004786153.1| - 0.54 10.3 2.1 1.6 8.8 0.7 2.6 2 1 0 2 2 2 0 Mitochondrial calcium uniporter TetR_C_15 PF17918.1 gi|344209977|ref|YP_004786153.1| - 7.5 7.4 8.1 28 5.5 0.1 4.4 5 0 0 5 5 4 0 Tetracyclin repressor-like, C-terminal domain Response_reg PF00072.24 gi|344209978|ref|YP_004786154.1| - 3.7e-23 81.8 0.0 9.4e-23 80.5 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|344209978|ref|YP_004786154.1| - 1.8e-18 67.1 1.4 4e-18 65.9 0.1 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|344209978|ref|YP_004786154.1| - 3.4e-18 66.3 1.7 1.3e-17 64.4 0.1 2.7 3 1 0 3 3 3 1 GAF domain PAS_4 PF08448.10 gi|344209978|ref|YP_004786154.1| - 4.2e-16 59.2 0.0 8.8e-16 58.1 0.0 1.6 1 0 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|344209978|ref|YP_004786154.1| - 2.8e-14 52.9 1.2 2.8e-14 52.9 1.2 3.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|344209978|ref|YP_004786154.1| - 1.1e-10 41.7 0.0 3.1e-10 40.2 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|344209978|ref|YP_004786154.1| - 3.3e-10 40.0 0.0 1e-09 38.4 0.0 1.9 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|344209978|ref|YP_004786154.1| - 1.5e-09 38.6 0.0 2.1e-08 34.8 0.0 2.6 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|344209978|ref|YP_004786154.1| - 1.5e-07 31.8 0.0 5.6e-07 30.0 0.0 2.0 2 0 0 2 2 2 1 GAF domain PAS_3 PF08447.12 gi|344209978|ref|YP_004786154.1| - 1.5e-06 28.4 0.0 4.8e-06 26.8 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|344209978|ref|YP_004786154.1| - 6.7e-05 22.8 0.0 0.00028 20.8 0.0 2.1 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|344209978|ref|YP_004786154.1| - 0.023 14.6 0.1 0.023 14.6 0.1 2.7 3 0 0 3 3 3 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|344209978|ref|YP_004786154.1| - 0.026 14.4 0.0 0.062 13.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TBCA PF02970.16 gi|344209978|ref|YP_004786154.1| - 0.094 13.1 0.3 0.33 11.3 0.3 1.9 1 0 0 1 1 1 0 Tubulin binding cofactor A Abhydrolase_6 PF12697.7 gi|344209979|ref|YP_004786155.1| - 7.8e-20 72.4 4.1 9.4e-20 72.2 4.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|344209979|ref|YP_004786155.1| - 1.3e-09 38.1 0.0 2.7e-09 37.0 0.0 1.5 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|344209979|ref|YP_004786155.1| - 0.0013 18.0 0.0 0.0018 17.6 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|344209979|ref|YP_004786155.1| - 0.0045 16.8 0.0 0.0087 15.8 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|344209979|ref|YP_004786155.1| - 0.15 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Peripla_BP_2 PF01497.18 gi|344209980|ref|YP_004786156.1| - 4.9e-12 45.9 0.0 8.5e-12 45.1 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein IMPDH PF00478.25 gi|344209981|ref|YP_004786157.1| - 4e-117 391.1 7.3 4.6e-117 390.9 7.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|344209981|ref|YP_004786157.1| - 9.6e-09 35.1 13.6 0.00026 20.5 0.3 2.4 1 1 1 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|344209981|ref|YP_004786157.1| - 7.6e-07 28.5 10.1 1.6e-06 27.4 10.1 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|344209981|ref|YP_004786157.1| - 5.5e-06 26.0 1.8 0.00019 21.0 0.1 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|344209981|ref|YP_004786157.1| - 0.0016 17.7 8.2 0.0016 17.6 3.9 2.7 3 0 0 3 3 3 1 Conserved region in glutamate synthase TMP-TENI PF02581.17 gi|344209981|ref|YP_004786157.1| - 0.009 15.4 5.7 0.018 14.4 5.3 1.7 1 1 1 2 2 2 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|344209981|ref|YP_004786157.1| - 0.011 14.9 0.7 0.011 14.9 0.7 1.7 3 0 0 3 3 3 0 Dihydroorotate dehydrogenase Aldolase PF01081.19 gi|344209981|ref|YP_004786157.1| - 0.062 12.7 3.1 0.14 11.5 1.0 2.2 1 1 1 2 2 2 0 KDPG and KHG aldolase DUF934 PF06073.12 gi|344209982|ref|YP_004786158.1| - 0.015 15.2 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF934) DUF969 PF06149.12 gi|344209982|ref|YP_004786158.1| - 0.026 14.0 0.1 0.028 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF969) Molybdopterin PF00384.22 gi|344209983|ref|YP_004786159.1| - 1.6e-80 271.2 0.0 1.9e-80 270.9 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344209983|ref|YP_004786159.1| - 3.6e-32 110.7 0.0 7.6e-32 109.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|344209983|ref|YP_004786159.1| - 1.1e-05 25.3 4.8 1.4e-05 25.0 3.1 2.0 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TPP_enzyme_M PF00205.22 gi|344209983|ref|YP_004786159.1| - 0.028 14.2 0.3 5 6.9 0.0 2.9 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain zf-ribbon_3 PF13248.6 gi|344209983|ref|YP_004786159.1| - 0.043 13.2 0.3 0.15 11.6 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain NosD PF05048.13 gi|344209984|ref|YP_004786160.1| - 3.3e-23 82.2 4.7 1.3e-22 80.3 1.3 2.1 1 1 1 2 2 2 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|344209984|ref|YP_004786160.1| - 1.4e-14 54.3 12.7 7.7e-11 42.1 2.6 3.0 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.12 gi|344209984|ref|YP_004786160.1| - 1.7e-13 51.1 0.0 3e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 NosL DUF1565 PF07602.11 gi|344209984|ref|YP_004786160.1| - 0.00043 19.7 13.6 0.076 12.3 13.6 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1565) ABC_tran PF00005.27 gi|344209985|ref|YP_004786161.1| - 6.7e-28 97.9 0.0 9e-28 97.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344209985|ref|YP_004786161.1| - 1.6e-17 64.3 0.1 4.4e-09 36.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344209985|ref|YP_004786161.1| - 2.5e-05 23.8 0.0 0.046 13.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344209985|ref|YP_004786161.1| - 7.7e-05 22.6 0.0 0.0029 17.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|344209985|ref|YP_004786161.1| - 0.00053 19.7 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|344209985|ref|YP_004786161.1| - 0.00094 19.7 0.0 0.0013 19.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344209985|ref|YP_004786161.1| - 0.012 15.5 0.1 0.026 14.4 0.1 1.5 2 0 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|344209985|ref|YP_004786161.1| - 0.013 15.6 0.0 0.019 15.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|344209985|ref|YP_004786161.1| - 0.015 15.7 0.0 0.026 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain Adeno_IVa2 PF02456.15 gi|344209985|ref|YP_004786161.1| - 0.033 13.0 0.0 0.045 12.5 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_13 PF13166.6 gi|344209985|ref|YP_004786161.1| - 0.046 12.4 0.0 2.7 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|344209985|ref|YP_004786161.1| - 0.19 11.8 0.1 0.37 10.9 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase cobW PF02492.19 gi|344209985|ref|YP_004786161.1| - 0.23 11.0 0.3 0.42 10.2 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC2_membrane_2 PF12679.7 gi|344209986|ref|YP_004786162.1| - 2.5e-07 30.3 21.1 1.2e-05 24.8 21.1 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|344209986|ref|YP_004786162.1| - 0.0026 17.2 7.2 0.0026 17.2 7.2 2.2 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|344209986|ref|YP_004786162.1| - 0.18 10.9 16.2 0.038 13.1 12.7 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein HrcA_DNA-bdg PF03444.15 gi|344209986|ref|YP_004786162.1| - 0.2 11.3 0.2 0.43 10.3 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_20 PF12840.7 gi|344209987|ref|YP_004786163.1| - 4.4e-15 55.5 3.2 4.1e-09 36.4 1.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|344209987|ref|YP_004786163.1| - 8.9e-13 47.6 0.0 2.5e-08 33.4 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344209987|ref|YP_004786163.1| - 1.1e-11 44.4 0.1 5.5e-07 29.4 0.1 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|344209987|ref|YP_004786163.1| - 2.2e-08 33.8 4.9 5.2e-06 26.3 0.7 3.0 3 2 0 3 3 3 2 MarR family TrmB PF01978.19 gi|344209987|ref|YP_004786163.1| - 2.5e-08 33.7 0.0 4.2e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|344209987|ref|YP_004786163.1| - 2.4e-06 27.4 0.1 2.6e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 HTH domain Rrf2 PF02082.20 gi|344209987|ref|YP_004786163.1| - 5.5e-05 23.4 0.1 0.0047 17.3 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.12 gi|344209987|ref|YP_004786163.1| - 5.6e-05 22.9 0.0 0.22 11.3 0.0 2.7 2 1 0 2 2 2 2 HTH DNA binding domain MarR PF01047.22 gi|344209987|ref|YP_004786163.1| - 7.2e-05 22.6 0.0 0.00035 20.4 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|344209987|ref|YP_004786163.1| - 9.9e-05 22.3 0.4 0.00021 21.2 0.2 1.8 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344209987|ref|YP_004786163.1| - 0.00019 21.2 1.2 0.0027 17.5 0.8 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|344209987|ref|YP_004786163.1| - 0.00021 21.4 0.0 0.15 12.3 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|344209987|ref|YP_004786163.1| - 0.001 19.2 0.0 0.17 12.1 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain RP-C PF03428.13 gi|344209987|ref|YP_004786163.1| - 0.005 16.5 0.0 0.19 11.3 0.0 2.4 2 0 0 2 2 2 1 Replication protein C N-terminal domain HTH_CodY PF08222.11 gi|344209987|ref|YP_004786163.1| - 0.0067 16.0 0.0 0.027 14.0 0.0 1.9 2 0 0 2 2 2 1 CodY helix-turn-helix domain HTH_DeoR PF08220.12 gi|344209987|ref|YP_004786163.1| - 0.0094 15.7 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain AbiEi_4 PF13338.6 gi|344209987|ref|YP_004786163.1| - 0.017 15.3 0.5 8.4 6.6 0.1 2.6 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Phage_CI_repr PF07022.13 gi|344209987|ref|YP_004786163.1| - 0.019 15.1 0.0 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain FaeA PF04703.12 gi|344209987|ref|YP_004786163.1| - 0.021 15.2 0.1 4.5 7.7 0.0 2.2 2 0 0 2 2 2 0 FaeA-like protein DprA_WH PF17782.1 gi|344209987|ref|YP_004786163.1| - 0.052 13.7 6.4 0.41 10.8 1.0 3.4 3 1 0 3 3 3 0 DprA winged helix domain Glyco_transf_56 PF07429.11 gi|344209987|ref|YP_004786163.1| - 0.059 12.5 0.0 0.07 12.2 0.0 1.0 1 0 0 1 1 1 0 4-alpha-L-fucosyltransferase glycosyl transferase group 56 HTH_27 PF13463.6 gi|344209987|ref|YP_004786163.1| - 0.062 13.8 0.3 3.3 8.3 0.2 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_31 PF13560.6 gi|344209987|ref|YP_004786163.1| - 3.8 7.9 8.9 36 4.8 8.8 2.7 1 1 0 1 1 1 0 Helix-turn-helix domain NosL PF05573.12 gi|344209988|ref|YP_004786164.1| - 2e-43 147.9 0.1 2.4e-43 147.6 0.1 1.1 1 0 0 1 1 1 1 NosL RRM_1 PF00076.22 gi|344209988|ref|YP_004786164.1| - 0.0077 16.0 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VATC PF18716.1 gi|344209988|ref|YP_004786164.1| - 0.0091 15.8 3.5 0.088 12.7 1.4 2.3 2 0 0 2 2 2 1 Vms1-associating treble clef domain LysE PF01810.18 gi|344209989|ref|YP_004786165.1| - 0.096 12.1 4.9 0.12 11.8 4.9 1.2 1 0 0 1 1 1 0 LysE type translocator 7TMR-DISM_7TM PF07695.11 gi|344209989|ref|YP_004786165.1| - 0.36 10.7 7.2 0.4 10.5 7.2 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling MARVEL PF01284.23 gi|344209989|ref|YP_004786165.1| - 1.5 8.9 6.2 6.1 6.9 6.2 1.8 1 1 0 1 1 1 0 Membrane-associating domain DUF1772 PF08592.11 gi|344209989|ref|YP_004786165.1| - 2.6 8.4 6.8 5.2 7.4 6.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Usp PF00582.26 gi|344209990|ref|YP_004786166.1| - 3.8e-30 105.2 2.2 4.2e-30 105.1 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|344209990|ref|YP_004786166.1| - 0.00046 20.2 0.0 0.00057 19.9 0.0 1.1 1 0 0 1 1 1 1 DNA photolyase Pyridox_ox_2 PF12900.7 gi|344209991|ref|YP_004786167.1| - 1.3e-17 64.2 0.0 1.4e-17 64.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344209991|ref|YP_004786167.1| - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase DUF2267 PF10025.9 gi|344209992|ref|YP_004786168.1| - 3e-36 124.4 0.7 4.1e-36 123.9 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Usp PF00582.26 gi|344209993|ref|YP_004786169.1| - 6.4e-67 224.4 4.4 4.2e-33 114.8 0.9 2.0 2 0 0 2 2 2 2 Universal stress protein family FR47 PF08445.10 gi|344209993|ref|YP_004786169.1| - 0.0012 18.7 0.2 0.61 10.1 0.0 2.6 2 0 0 2 2 2 2 FR47-like protein AP_endonuc_2 PF01261.24 gi|344209993|ref|YP_004786169.1| - 0.0079 15.7 3.1 0.24 10.8 0.1 2.5 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Pyridox_ox_2 PF12900.7 gi|344209994|ref|YP_004786170.1| - 1.3e-17 64.1 0.0 1.5e-17 63.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344209994|ref|YP_004786170.1| - 0.0058 16.8 0.0 0.0082 16.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase E1-E2_ATPase PF00122.20 gi|344209995|ref|YP_004786171.1| - 2.8e-56 189.9 2.7 2.8e-56 189.9 2.7 2.6 2 0 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.21 gi|344209995|ref|YP_004786171.1| - 1.4e-38 132.4 1.1 1.4e-38 132.4 1.1 1.9 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.26 gi|344209995|ref|YP_004786171.1| - 4.1e-28 99.1 3.9 8.7e-28 98.0 3.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|344209995|ref|YP_004786171.1| - 4.8e-21 74.6 0.0 3.2e-20 72.0 0.0 2.1 2 0 0 2 2 2 1 Cation transport ATPase (P-type) Cation_ATPase_N PF00690.26 gi|344209995|ref|YP_004786171.1| - 1.5e-13 50.2 0.0 3e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|344209995|ref|YP_004786171.1| - 1.1e-05 25.3 0.8 9.2e-05 22.3 0.6 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|344209995|ref|YP_004786171.1| - 0.0007 20.0 0.3 0.0014 19.1 0.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 gi|344209996|ref|YP_004786172.1| - 4e-58 197.0 1.8 5.1e-58 196.6 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344209996|ref|YP_004786172.1| - 1e-26 93.3 1.9 6.5e-21 74.7 0.4 3.4 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|344209996|ref|YP_004786172.1| - 6.3e-13 48.9 0.0 3.4e-12 46.6 0.0 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|344209996|ref|YP_004786172.1| - 1.6e-08 34.2 0.0 0.0035 16.6 0.0 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|344209996|ref|YP_004786172.1| - 1.1e-06 28.8 0.9 0.012 15.9 0.0 3.5 4 0 0 4 4 4 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|344209996|ref|YP_004786172.1| - 6.6e-06 25.5 10.8 0.22 10.6 0.4 4.1 1 1 3 4 4 4 3 FAD binding domain HI0933_like PF03486.14 gi|344209996|ref|YP_004786172.1| - 2.3e-05 23.3 0.1 0.17 10.6 0.0 3.6 3 1 1 4 4 4 2 HI0933-like protein Amino_oxidase PF01593.24 gi|344209996|ref|YP_004786172.1| - 0.00015 21.2 0.2 1.8 7.8 0.0 3.0 3 0 0 3 3 3 2 Flavin containing amine oxidoreductase Thi4 PF01946.17 gi|344209996|ref|YP_004786172.1| - 0.025 13.8 0.1 0.35 10.1 0.0 2.6 3 0 0 3 3 3 0 Thi4 family Lycopene_cycl PF05834.12 gi|344209996|ref|YP_004786172.1| - 0.028 13.5 0.3 0.48 9.4 0.0 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|344209996|ref|YP_004786172.1| - 0.086 12.4 0.1 6.1 6.4 0.0 2.3 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|344209996|ref|YP_004786172.1| - 0.099 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TauE PF01925.19 gi|344209997|ref|YP_004786173.1| - 7.1e-18 65.1 37.9 8.9e-18 64.8 37.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DrsE PF02635.15 gi|344209998|ref|YP_004786174.1| - 2.9e-09 37.3 0.0 3.3e-09 37.1 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Thioredoxin PF00085.20 gi|344209999|ref|YP_004786175.1| - 3.9e-27 94.2 0.0 4.4e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344209999|ref|YP_004786175.1| - 8.8e-11 42.2 0.1 3.9e-09 36.9 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.6 gi|344209999|ref|YP_004786175.1| - 8e-07 29.1 0.0 9.8e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|344209999|ref|YP_004786175.1| - 1.1e-05 25.4 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 gi|344209999|ref|YP_004786175.1| - 2.3e-05 24.2 0.3 3.8e-05 23.5 0.1 1.5 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_8 PF13905.6 gi|344209999|ref|YP_004786175.1| - 7.1e-05 23.1 0.0 0.44 10.9 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|344209999|ref|YP_004786175.1| - 9.4e-05 22.2 0.0 0.00012 21.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|344209999|ref|YP_004786175.1| - 0.0011 19.2 0.0 0.0023 18.0 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like HyaE PF07449.11 gi|344209999|ref|YP_004786175.1| - 0.0018 18.2 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE OST3_OST6 PF04756.13 gi|344209999|ref|YP_004786175.1| - 0.0027 17.1 0.0 0.0033 16.8 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|344209999|ref|YP_004786175.1| - 0.0032 17.8 0.0 0.0043 17.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|344209999|ref|YP_004786175.1| - 0.0056 16.4 0.0 0.013 15.2 0.0 1.6 1 1 1 2 2 2 1 Thioredoxin Glutaredoxin PF00462.24 gi|344209999|ref|YP_004786175.1| - 0.0069 16.6 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin Redoxin PF08534.10 gi|344209999|ref|YP_004786175.1| - 0.012 15.3 0.1 1.3 8.7 0.1 2.0 1 1 1 2 2 2 0 Redoxin AhpC-TSA PF00578.21 gi|344209999|ref|YP_004786175.1| - 0.013 15.4 0.0 0.55 10.2 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_4 PF13462.6 gi|344209999|ref|YP_004786175.1| - 0.065 13.4 0.0 0.14 12.3 0.0 1.5 1 1 1 2 2 2 0 Thioredoxin TrbC_Ftype PF09673.10 gi|344209999|ref|YP_004786175.1| - 0.17 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein TrmB PF01978.19 gi|344210000|ref|YP_004786176.1| - 3.8e-18 65.1 0.0 5.2e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|344210000|ref|YP_004786176.1| - 1.5e-07 31.1 0.1 3e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|344210000|ref|YP_004786176.1| - 1.8e-06 27.8 0.0 3.7e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344210000|ref|YP_004786176.1| - 4.6e-06 26.5 0.0 8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 HTH domain Penicillinase_R PF03965.16 gi|344210000|ref|YP_004786176.1| - 8.6e-05 22.9 0.0 0.00011 22.6 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor MarR_2 PF12802.7 gi|344210000|ref|YP_004786176.1| - 0.00012 21.9 0.0 0.00038 20.3 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|344210000|ref|YP_004786176.1| - 0.0003 20.8 0.2 0.00067 19.7 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210000|ref|YP_004786176.1| - 0.0009 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.13 gi|344210000|ref|YP_004786176.1| - 0.0011 18.8 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain UMPH-1 PF05822.12 gi|344210000|ref|YP_004786176.1| - 0.0028 17.2 0.1 0.0046 16.5 0.1 1.3 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_29 PF13551.6 gi|344210000|ref|YP_004786176.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix GntR PF00392.21 gi|344210000|ref|YP_004786176.1| - 0.016 14.8 0.1 0.037 13.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|344210000|ref|YP_004786176.1| - 0.018 15.1 0.0 0.041 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.6 gi|344210000|ref|YP_004786176.1| - 0.03 14.0 0.1 0.11 12.2 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|344210000|ref|YP_004786176.1| - 0.037 14.0 0.1 0.073 13.1 0.1 1.5 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain SMC_ScpB PF04079.16 gi|344210000|ref|YP_004786176.1| - 0.047 13.3 0.4 1.2 8.7 0.0 2.4 1 1 1 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_23 PF13384.6 gi|344210000|ref|YP_004786176.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain Rrf2 PF02082.20 gi|344210000|ref|YP_004786176.1| - 0.078 13.3 0.0 0.17 12.3 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator Dimerisation PF08100.11 gi|344210000|ref|YP_004786176.1| - 0.085 12.9 0.0 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 Dimerisation domain HTH_27 PF13463.6 gi|344210000|ref|YP_004786176.1| - 0.15 12.6 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sulf_transp PF04143.14 gi|344210001|ref|YP_004786177.1| - 1e-07 31.8 9.0 1e-07 31.8 9.0 2.1 1 1 1 2 2 2 2 Sulphur transport Sulf_transp PF04143.14 gi|344210002|ref|YP_004786178.1| - 7.3e-14 52.0 11.9 1.1e-13 51.5 11.9 1.2 1 0 0 1 1 1 1 Sulphur transport Trp_oprn_chp PF09534.10 gi|344210002|ref|YP_004786178.1| - 0.026 14.3 0.7 0.026 14.3 0.7 1.9 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4282 PF14110.6 gi|344210002|ref|YP_004786178.1| - 1.8 9.3 8.0 0.63 10.8 3.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) Lactamase_B PF00753.27 gi|344210003|ref|YP_004786179.1| - 1.3e-12 48.1 4.5 2.4e-12 47.3 4.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|344210003|ref|YP_004786179.1| - 3.8e-10 40.2 0.0 6.8e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|344210003|ref|YP_004786179.1| - 0.00066 19.3 0.1 0.0013 18.3 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TusA PF01206.17 gi|344210004|ref|YP_004786180.1| - 1.4e-21 76.1 0.0 1.6e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|344210004|ref|YP_004786180.1| - 0.029 14.2 0.1 0.057 13.3 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|344210005|ref|YP_004786181.1| - 7.2e-54 181.9 0.7 8.7e-54 181.6 0.7 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|344210005|ref|YP_004786181.1| - 4.7e-07 30.2 0.0 2.1e-06 28.1 0.0 1.9 1 1 0 1 1 1 1 DsrE/DsrF-like family aGPT-Pplase1 PF18723.1 gi|344210005|ref|YP_004786181.1| - 0.04 13.3 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1 DUF1641 PF07849.11 gi|344210006|ref|YP_004786182.1| - 6.4e-16 58.0 0.3 1.5e-15 56.8 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|344210007|ref|YP_004786183.1| - 2.1e-22 79.7 0.0 1.1e-21 77.4 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|344210007|ref|YP_004786183.1| - 0.002 18.1 0.2 0.24 11.4 0.0 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pribosyltran PF00156.27 gi|344210007|ref|YP_004786183.1| - 0.0076 15.8 0.0 0.02 14.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pyr_redox PF00070.27 gi|344210007|ref|YP_004786183.1| - 0.0095 16.5 0.1 3.9 8.1 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.17 gi|344210008|ref|YP_004786184.1| - 9.7e-18 63.8 0.0 1.1e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DSHCT PF08148.12 gi|344210008|ref|YP_004786184.1| - 0.017 14.8 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 DSHCT (NUC185) domain Methyltransf_31 PF13847.6 gi|344210009|ref|YP_004786185.1| - 2.7e-12 46.7 0.0 3.2e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210009|ref|YP_004786185.1| - 7e-12 45.9 0.0 9.9e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210009|ref|YP_004786185.1| - 2e-11 44.4 0.0 2.7e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210009|ref|YP_004786185.1| - 6.8e-09 35.4 0.0 8.1e-09 35.2 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|344210009|ref|YP_004786185.1| - 8.1e-08 32.9 0.0 1e-07 32.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|344210009|ref|YP_004786185.1| - 7.5e-07 29.1 0.0 9.7e-07 28.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|344210009|ref|YP_004786185.1| - 1.5e-05 24.9 0.0 1.9e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344210009|ref|YP_004786185.1| - 1.7e-05 24.4 0.0 2.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|344210009|ref|YP_004786185.1| - 0.00017 21.1 0.0 0.00022 20.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|344210009|ref|YP_004786185.1| - 0.00017 21.4 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Fibrillarin PF01269.17 gi|344210009|ref|YP_004786185.1| - 0.00042 19.5 0.0 0.0018 17.4 0.0 1.8 2 0 0 2 2 2 1 Fibrillarin DUF938 PF06080.12 gi|344210009|ref|YP_004786185.1| - 0.0014 18.4 0.0 0.0026 17.6 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF938) Methyltransf_4 PF02390.17 gi|344210009|ref|YP_004786185.1| - 0.0036 16.8 0.0 0.005 16.3 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|344210009|ref|YP_004786185.1| - 0.054 12.8 0.0 0.069 12.4 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_32 PF13679.6 gi|344210009|ref|YP_004786185.1| - 0.078 13.0 0.0 0.094 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|344210009|ref|YP_004786185.1| - 0.081 12.9 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|344210009|ref|YP_004786185.1| - 0.088 12.6 0.0 0.45 10.3 0.0 1.8 1 1 0 1 1 1 0 Hypothetical methyltransferase CMAS PF02353.20 gi|344210009|ref|YP_004786185.1| - 0.1 11.9 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF2892 PF11127.8 gi|344210010|ref|YP_004786186.1| - 1.3e-16 60.3 7.7 1.6e-16 60.0 7.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Chlorosome_CsmC PF11098.8 gi|344210010|ref|YP_004786186.1| - 0.014 15.4 2.8 0.015 15.3 2.8 1.0 1 0 0 1 1 1 0 Chlorosome envelope protein C MSP1b PF03429.13 gi|344210010|ref|YP_004786186.1| - 0.34 8.9 1.0 0.37 8.8 1.0 1.0 1 0 0 1 1 1 0 Major surface protein 1B Peptidase_M20 PF01546.28 gi|344210011|ref|YP_004786187.1| - 3.3e-40 138.0 0.2 5e-40 137.4 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344210011|ref|YP_004786187.1| - 2.3e-18 66.1 0.0 4.4e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|344210011|ref|YP_004786187.1| - 5.8e-10 39.2 0.1 1.1e-07 31.8 0.1 2.1 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M42 PF05343.14 gi|344210011|ref|YP_004786187.1| - 0.005 15.9 0.1 2.8 6.9 0.0 2.3 2 0 0 2 2 2 2 M42 glutamyl aminopeptidase Thioredoxin PF00085.20 gi|344210012|ref|YP_004786188.1| - 2.1e-27 95.1 0.0 2.7e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344210012|ref|YP_004786188.1| - 5.7e-12 46.1 0.1 1.4e-10 41.6 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|344210012|ref|YP_004786188.1| - 4.1e-06 26.7 0.0 6.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|344210012|ref|YP_004786188.1| - 4.2e-05 23.6 0.0 8.3e-05 22.7 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like TraF PF13728.6 gi|344210012|ref|YP_004786188.1| - 4.9e-05 23.3 0.0 6.3e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_8 PF13905.6 gi|344210012|ref|YP_004786188.1| - 6e-05 23.3 0.0 0.072 13.4 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like DSBA PF01323.20 gi|344210012|ref|YP_004786188.1| - 0.00011 22.1 0.2 0.00023 21.0 0.0 1.6 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_9 PF14595.6 gi|344210012|ref|YP_004786188.1| - 0.00013 21.7 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|344210012|ref|YP_004786188.1| - 0.0002 21.3 0.1 0.00035 20.5 0.0 1.5 2 0 0 2 2 1 1 Hydrogenase-1 expression protein HyaE DUF836 PF05768.14 gi|344210012|ref|YP_004786188.1| - 0.00072 19.9 0.0 0.0011 19.3 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) OST3_OST6 PF04756.13 gi|344210012|ref|YP_004786188.1| - 0.004 16.5 0.0 0.005 16.2 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family AhpC-TSA PF00578.21 gi|344210012|ref|YP_004786188.1| - 0.012 15.6 0.0 0.086 12.8 0.0 2.0 1 1 0 1 1 1 0 AhpC/TSA family Glutaredoxin PF00462.24 gi|344210012|ref|YP_004786188.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin Redoxin PF08534.10 gi|344210012|ref|YP_004786188.1| - 0.029 14.1 0.1 0.41 10.3 0.1 2.0 1 1 1 2 2 2 0 Redoxin Thioredoxin_5 PF13743.6 gi|344210012|ref|YP_004786188.1| - 0.042 13.5 0.0 0.056 13.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin DUF953 PF06110.11 gi|344210012|ref|YP_004786188.1| - 0.056 13.1 0.4 0.54 9.9 0.4 2.1 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) KaiB PF07689.12 gi|344210012|ref|YP_004786188.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 KaiB domain DUF302 PF03625.14 gi|344210013|ref|YP_004786189.1| - 6.4e-15 54.8 0.0 1e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|344210014|ref|YP_004786190.1| - 1e-16 61.4 0.0 1.7e-16 60.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210014|ref|YP_004786190.1| - 4.3e-15 56.2 0.0 1e-14 55.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210014|ref|YP_004786190.1| - 5.4e-08 32.8 0.0 1.3e-07 31.5 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210014|ref|YP_004786190.1| - 4.6e-06 26.1 0.0 6e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|344210014|ref|YP_004786190.1| - 4e-05 22.8 0.0 6.5e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_23 PF13489.6 gi|344210014|ref|YP_004786190.1| - 9.3e-05 22.3 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210014|ref|YP_004786190.1| - 0.0032 18.2 0.0 0.0068 17.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|344210014|ref|YP_004786190.1| - 0.0092 16.1 0.0 0.016 15.3 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|344210014|ref|YP_004786190.1| - 0.073 12.1 0.0 0.086 11.9 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.15 gi|344210014|ref|YP_004786190.1| - 0.13 12.1 0.0 0.24 11.2 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase UreF PF01730.16 gi|344210015|ref|YP_004786191.1| - 3.2e-29 102.2 8.0 4.5e-29 101.7 8.0 1.2 1 0 0 1 1 1 1 UreF UreE_N PF02814.15 gi|344210016|ref|YP_004786192.1| - 3.5e-11 42.5 2.2 3.5e-11 42.5 2.2 1.8 2 0 0 2 2 2 1 UreE urease accessory protein, N-terminal domain UreE_C PF05194.12 gi|344210016|ref|YP_004786192.1| - 1.7e-05 25.2 0.6 3.1e-05 24.4 0.6 1.4 1 0 0 1 1 1 1 UreE urease accessory protein, C-terminal domain UreD PF01774.17 gi|344210017|ref|YP_004786193.1| - 3e-47 161.3 0.7 3.7e-47 161.0 0.7 1.1 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.19 gi|344210018|ref|YP_004786194.1| - 1.1e-31 109.8 0.0 1.3e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|344210018|ref|YP_004786194.1| - 5.2e-09 36.1 0.0 8.5e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|344210018|ref|YP_004786194.1| - 4.7e-07 29.1 1.0 2.1e-06 26.9 1.0 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|344210018|ref|YP_004786194.1| - 0.0022 18.5 0.0 0.0022 18.5 0.0 1.4 1 1 0 1 1 1 1 ABC transporter RsgA_GTPase PF03193.16 gi|344210018|ref|YP_004786194.1| - 0.0026 17.7 0.1 1.4 8.8 0.0 2.5 3 0 0 3 3 3 2 RsgA GTPase AAA_18 PF13238.6 gi|344210018|ref|YP_004786194.1| - 0.0079 16.7 0.0 0.012 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210018|ref|YP_004786194.1| - 0.012 15.4 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|344210018|ref|YP_004786194.1| - 0.031 14.2 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 NTPase TrwB_AAD_bind PF10412.9 gi|344210018|ref|YP_004786194.1| - 0.049 12.5 0.0 0.066 12.1 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain LpxK PF02606.14 gi|344210018|ref|YP_004786194.1| - 0.051 12.7 0.1 0.088 11.9 0.1 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_16 PF13191.6 gi|344210018|ref|YP_004786194.1| - 0.081 13.3 0.0 0.1 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_26 PF13500.6 gi|344210018|ref|YP_004786194.1| - 0.089 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|344210018|ref|YP_004786194.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|344210018|ref|YP_004786194.1| - 0.13 12.2 0.1 0.21 11.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain KAP_NTPase PF07693.14 gi|344210018|ref|YP_004786194.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain T2SSE PF00437.20 gi|344210018|ref|YP_004786194.1| - 0.19 10.7 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Urease_gamma PF00547.18 gi|344210019|ref|YP_004786195.1| - 4.8e-42 142.3 0.0 5.5e-42 142.1 0.0 1.0 1 0 0 1 1 1 1 Urease, gamma subunit Amidohydro_1 PF01979.20 gi|344210020|ref|YP_004786196.1| - 1.8e-64 218.3 0.3 2.3e-64 217.9 0.3 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|344210020|ref|YP_004786196.1| - 1.9e-49 167.0 2.7 2.3e-49 166.7 1.5 1.8 2 0 0 2 2 2 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 gi|344210020|ref|YP_004786196.1| - 3.9e-10 39.8 3.6 3.1e-07 30.2 0.2 2.6 1 1 0 2 2 2 2 Amidohydrolase family Urease_beta PF00699.20 gi|344210021|ref|YP_004786197.1| - 7.5e-45 151.0 0.1 1e-44 150.5 0.1 1.2 1 0 0 1 1 1 1 Urease beta subunit Peripla_BP_6 PF13458.6 gi|344210022|ref|YP_004786198.1| - 6e-68 230.0 0.6 7.4e-68 229.7 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|344210022|ref|YP_004786198.1| - 3.3e-66 223.8 0.1 4.1e-66 223.4 0.1 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|344210022|ref|YP_004786198.1| - 0.0047 16.7 4.1 0.0093 15.8 4.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_2 PF02653.16 gi|344210023|ref|YP_004786199.1| - 5.9e-36 124.0 35.6 8.9e-36 123.4 35.6 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2613 PF11021.8 gi|344210023|ref|YP_004786199.1| - 0.95 9.6 0.0 0.95 9.6 0.0 5.4 6 1 1 7 7 7 0 Protein of unknown function (DUF2613) BPD_transp_2 PF02653.16 gi|344210024|ref|YP_004786200.1| - 8.2e-33 113.7 39.6 8.2e-33 113.7 39.6 1.4 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344210025|ref|YP_004786201.1| - 4.1e-31 108.3 0.0 6e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210025|ref|YP_004786201.1| - 7.2e-09 35.9 1.9 0.0011 18.9 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210025|ref|YP_004786201.1| - 7.9e-07 28.7 0.3 0.00034 20.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|344210025|ref|YP_004786201.1| - 2.6e-05 24.8 0.1 4.2e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|344210025|ref|YP_004786201.1| - 0.00011 21.9 0.0 0.00018 21.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344210025|ref|YP_004786201.1| - 0.00024 21.1 0.0 0.00051 20.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|344210025|ref|YP_004786201.1| - 0.00053 19.7 0.0 0.00098 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 gi|344210025|ref|YP_004786201.1| - 0.0039 17.1 0.2 0.0088 15.9 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_16 PF13191.6 gi|344210025|ref|YP_004786201.1| - 0.0053 17.2 0.1 0.01 16.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|344210025|ref|YP_004786201.1| - 0.0057 16.7 0.0 0.026 14.6 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|344210025|ref|YP_004786201.1| - 0.0061 16.3 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|344210025|ref|YP_004786201.1| - 0.0064 16.2 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|344210025|ref|YP_004786201.1| - 0.0066 16.7 0.1 0.019 15.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain GTP_EFTU PF00009.27 gi|344210025|ref|YP_004786201.1| - 0.019 14.5 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|344210025|ref|YP_004786201.1| - 0.22 11.8 1.7 2.6 8.3 0.1 2.5 2 1 1 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|344210026|ref|YP_004786202.1| - 1.3e-34 119.7 0.0 2.2e-34 118.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210026|ref|YP_004786202.1| - 3.1e-08 33.8 0.6 0.0017 18.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344210026|ref|YP_004786202.1| - 9.6e-05 22.0 0.0 0.00018 21.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|344210026|ref|YP_004786202.1| - 0.0056 17.1 0.0 0.0076 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|344210026|ref|YP_004786202.1| - 0.0086 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|344210026|ref|YP_004786202.1| - 0.0091 16.3 0.4 0.029 14.6 0.4 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|344210026|ref|YP_004786202.1| - 0.013 14.7 0.2 0.03 13.5 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|344210026|ref|YP_004786202.1| - 0.021 15.2 0.2 0.036 14.5 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|344210026|ref|YP_004786202.1| - 0.022 14.7 1.1 0.05 13.5 0.2 2.0 2 1 1 3 3 3 0 NTPase NACHT PF05729.12 gi|344210026|ref|YP_004786202.1| - 0.025 14.5 0.3 0.047 13.6 0.3 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|344210026|ref|YP_004786202.1| - 0.065 12.6 0.1 5.6 6.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|344210026|ref|YP_004786202.1| - 0.091 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 gi|344210026|ref|YP_004786202.1| - 0.096 12.7 0.0 0.21 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|344210026|ref|YP_004786202.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|344210026|ref|YP_004786202.1| - 0.14 12.0 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|344210026|ref|YP_004786202.1| - 0.15 12.2 0.3 0.33 11.1 0.2 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|344210026|ref|YP_004786202.1| - 0.17 11.3 0.5 0.62 9.5 0.4 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain DLIC PF05783.11 gi|344210026|ref|YP_004786202.1| - 0.18 10.6 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|344210026|ref|YP_004786202.1| - 0.33 10.6 2.0 0.28 10.9 0.6 1.8 2 1 0 2 2 2 0 AAA domain SNF PF00209.18 gi|344210027|ref|YP_004786203.1| - 1.3e-46 159.4 28.0 4.5e-26 91.6 13.0 2.1 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family MaoC_dehydratas PF01575.19 gi|344210028|ref|YP_004786204.1| - 8.5e-17 60.9 0.0 1.1e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|344210028|ref|YP_004786204.1| - 6e-08 32.9 0.0 1.9e-07 31.3 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase COE1_HLH PF16423.5 gi|344210028|ref|YP_004786204.1| - 0.097 12.4 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Transcription factor COE1 helix-loop-helix domain Creatininase PF02633.14 gi|344210029|ref|YP_004786205.1| - 5.1e-63 212.8 0.4 5.7e-63 212.6 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF393 PF04134.12 gi|344210030|ref|YP_004786206.1| - 0.0019 19.5 0.0 0.002 19.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 TraF PF13728.6 gi|344210030|ref|YP_004786206.1| - 0.067 13.0 0.0 0.095 12.5 0.0 1.3 1 1 0 1 1 1 0 F plasmid transfer operon protein SHOCT PF09851.9 gi|344210032|ref|YP_004786208.1| - 2.9e-07 30.0 0.1 4.7e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|344210032|ref|YP_004786208.1| - 4.2e-05 23.5 1.1 7.3e-05 22.7 1.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Sulfate_transp PF00916.20 gi|344210032|ref|YP_004786208.1| - 0.016 13.9 0.0 0.02 13.6 0.0 1.1 1 0 0 1 1 1 0 Sulfate permease family DUF5368 PF17336.2 gi|344210034|ref|YP_004786210.1| - 0.12 12.5 4.7 0.054 13.7 1.6 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5368) FtsK_gamma PF09397.10 gi|344210034|ref|YP_004786210.1| - 0.14 12.0 0.0 1.1 9.1 0.0 2.3 3 0 0 3 3 3 0 Ftsk gamma domain DUF3267 PF11667.8 gi|344210034|ref|YP_004786210.1| - 2.9 8.2 5.3 2.2 8.6 1.5 2.5 2 1 1 3 3 3 0 Putative zincin peptidase PQQ_2 PF13360.6 gi|344210035|ref|YP_004786211.1| - 1.1e-33 116.8 29.0 9.5e-22 77.7 8.4 3.0 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|344210035|ref|YP_004786211.1| - 4.1e-13 49.4 39.1 0.015 15.8 0.8 8.0 7 1 0 7 7 7 6 PQQ-like domain PQQ PF01011.21 gi|344210035|ref|YP_004786211.1| - 2.7e-06 27.1 2.4 6.7 6.8 0.1 6.1 5 0 0 5 5 5 3 PQQ enzyme repeat MTH865 PF07747.11 gi|344210037|ref|YP_004786213.1| - 1.7e-24 85.4 0.1 1.9e-24 85.2 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HMA PF00403.26 gi|344210038|ref|YP_004786214.1| - 1.1e-16 61.0 0.4 1.2e-16 60.9 0.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain BOFC_N PF08977.10 gi|344210038|ref|YP_004786214.1| - 0.13 12.3 0.1 0.89 9.6 0.0 1.9 2 0 0 2 2 2 0 Bypass of Forespore C, N terminal Usp PF00582.26 gi|344210039|ref|YP_004786215.1| - 1.3e-26 93.8 1.5 1.4e-26 93.7 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|344210039|ref|YP_004786215.1| - 0.014 15.4 0.1 0.025 14.6 0.1 1.4 1 1 0 1 1 1 0 DNA photolyase Sulfatase PF00884.23 gi|344210040|ref|YP_004786216.1| - 7.2e-32 111.0 0.0 1.1e-31 110.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344210040|ref|YP_004786216.1| - 1.5e-07 31.3 0.1 0.015 14.9 0.2 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Phosphoesterase PF04185.14 gi|344210040|ref|YP_004786216.1| - 0.0024 17.1 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 2 Phosphoesterase family DUF229 PF02995.17 gi|344210040|ref|YP_004786216.1| - 0.0031 16.2 0.0 0.0045 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|344210040|ref|YP_004786216.1| - 0.0036 16.4 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Metalloenzyme PF01676.18 gi|344210040|ref|YP_004786216.1| - 0.15 11.4 0.0 0.29 10.4 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|344210040|ref|YP_004786216.1| - 0.2 10.6 0.1 11 4.9 0.0 2.3 2 1 0 2 2 2 0 Alkaline phosphatase PIN_2 PF10130.9 gi|344210041|ref|YP_004786217.1| - 0.086 13.1 0.1 0.1 12.8 0.1 1.4 1 0 0 1 1 1 0 PIN domain RHH_8 PF17723.1 gi|344210041|ref|YP_004786217.1| - 0.11 12.7 0.0 1 9.5 0.0 2.0 2 0 0 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family Pyr_redox_2 PF07992.14 gi|344210042|ref|YP_004786218.1| - 2.7e-27 95.8 0.0 3.4e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210042|ref|YP_004786218.1| - 1.2e-14 54.3 0.0 3.3e-09 36.4 0.0 2.8 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344210042|ref|YP_004786218.1| - 4.1e-06 27.3 0.0 0.048 14.2 0.2 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344210042|ref|YP_004786218.1| - 5.6e-06 25.7 4.0 0.00023 20.4 0.7 2.7 2 1 1 3 3 3 2 FAD binding domain DAO PF01266.24 gi|344210042|ref|YP_004786218.1| - 2.5e-05 24.0 3.4 0.0094 15.6 1.9 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|344210042|ref|YP_004786218.1| - 4.6e-05 22.7 0.0 0.00022 20.5 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|344210042|ref|YP_004786218.1| - 7.1e-05 22.2 0.6 0.00012 21.5 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|344210042|ref|YP_004786218.1| - 0.00014 20.7 0.2 0.016 13.9 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|344210042|ref|YP_004786218.1| - 0.00023 20.7 1.8 0.00051 19.5 0.6 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|344210042|ref|YP_004786218.1| - 0.00055 19.1 0.3 0.0013 17.9 0.2 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|344210042|ref|YP_004786218.1| - 0.0037 16.6 0.1 0.007 15.6 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|344210042|ref|YP_004786218.1| - 0.011 15.7 0.7 0.44 10.5 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|344210042|ref|YP_004786218.1| - 0.014 15.7 0.3 0.034 14.4 0.3 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|344210042|ref|YP_004786218.1| - 0.051 12.6 0.4 0.29 10.2 0.3 1.9 1 1 1 2 2 2 0 Lycopene cyclase protein RVT_3 PF13456.6 gi|344210043|ref|YP_004786219.1| - 6.3e-10 38.9 0.0 8.5e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|344210043|ref|YP_004786219.1| - 1.5e-08 34.9 0.0 2.5e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 RNase H SCP_3 PF17844.1 gi|344210043|ref|YP_004786219.1| - 0.048 13.4 0.1 0.16 11.7 0.0 1.9 1 1 0 2 2 2 0 Bacterial SCP ortholog LRV PF01816.17 gi|344210043|ref|YP_004786219.1| - 1.4 9.5 5.4 5.3 7.7 0.4 3.2 2 1 1 3 3 3 0 Leucine rich repeat variant GSDH PF07995.11 gi|344210044|ref|YP_004786220.1| - 9.1e-114 380.2 0.0 1.1e-113 380.0 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.9 gi|344210044|ref|YP_004786220.1| - 0.004 16.9 2.5 0.004 16.9 2.5 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Glucodextran_B PF09136.10 gi|344210044|ref|YP_004786220.1| - 0.63 10.4 4.6 3.3 8.2 0.1 2.6 1 1 1 2 2 2 0 Glucodextranase, domain B DUF202 PF02656.15 gi|344210045|ref|YP_004786221.1| - 0.56 10.7 2.7 0.69 10.4 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) TrkA_N PF02254.18 gi|344210047|ref|YP_004786223.1| - 1.1e-43 148.1 2.7 1.4e-22 80.1 0.4 2.7 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|344210047|ref|YP_004786223.1| - 6.7e-25 86.7 0.2 1e-11 44.5 0.1 3.4 3 0 0 3 3 3 2 TrkA-C domain 2-Hacid_dh_C PF02826.19 gi|344210047|ref|YP_004786223.1| - 0.0029 17.0 0.0 0.0075 15.6 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|344210047|ref|YP_004786223.1| - 0.014 15.8 0.7 0.076 13.5 0.1 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding XdhC_C PF13478.6 gi|344210047|ref|YP_004786223.1| - 0.061 13.8 0.3 0.8 10.2 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain DUF2193 PF09959.9 gi|344210047|ref|YP_004786223.1| - 0.1 11.1 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2193) NmrA PF05368.13 gi|344210047|ref|YP_004786223.1| - 0.26 10.8 1.8 2.7 7.5 0.0 3.1 2 2 1 3 3 3 0 NmrA-like family PGM1_C PF18105.1 gi|344210047|ref|YP_004786223.1| - 0.35 10.4 3.3 1.9 8.0 0.1 3.3 4 0 0 4 4 4 0 PGM1 C-terminal domain PHO4 PF01384.20 gi|344210048|ref|YP_004786224.1| - 1.4e-35 122.9 40.0 1.4e-34 119.6 38.3 2.5 1 1 0 1 1 1 1 Phosphate transporter family AA_permease_2 PF13520.6 gi|344210049|ref|YP_004786225.1| - 1.2e-42 146.2 41.1 1.5e-42 145.9 41.1 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|344210049|ref|YP_004786225.1| - 3.1e-42 144.8 39.3 3.9e-42 144.4 39.3 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|344210049|ref|YP_004786225.1| - 0.00029 19.8 12.2 0.00029 19.8 12.2 2.2 2 1 0 2 2 2 1 Spore germination protein Usp PF00582.26 gi|344210050|ref|YP_004786226.1| - 1.3e-06 28.9 0.9 0.00015 22.3 0.1 2.5 2 1 0 2 2 2 2 Universal stress protein family SCO1-SenC PF02630.14 gi|344210051|ref|YP_004786227.1| - 6.4e-21 74.7 0.2 8.2e-21 74.3 0.2 1.1 1 0 0 1 1 1 1 SCO1/SenC TAT_signal PF10518.9 gi|344210051|ref|YP_004786227.1| - 0.0037 17.1 1.5 0.0059 16.4 1.5 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence KRAB PF01352.27 gi|344210051|ref|YP_004786227.1| - 0.11 12.2 0.1 0.25 11.0 0.1 1.6 1 0 0 1 1 1 0 KRAB box Redoxin PF08534.10 gi|344210052|ref|YP_004786228.1| - 2.2e-07 30.7 0.0 2.8e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|344210052|ref|YP_004786228.1| - 5.4e-06 26.3 0.0 7.2e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|344210052|ref|YP_004786228.1| - 0.00019 21.7 0.0 0.00032 21.0 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|344210052|ref|YP_004786228.1| - 0.00066 19.6 0.0 0.0014 18.6 0.0 1.4 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|344210052|ref|YP_004786228.1| - 0.085 13.3 0.0 0.13 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like domain DsbD PF02683.15 gi|344210053|ref|YP_004786229.1| - 5e-14 52.7 12.8 8.9e-14 51.9 12.8 1.3 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF3188 PF11384.8 gi|344210053|ref|YP_004786229.1| - 0.098 12.4 0.4 0.098 12.4 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) TrkH PF02386.16 gi|344210054|ref|YP_004786230.1| - 1e-66 225.4 14.4 6.3e-66 222.8 14.4 2.0 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|344210055|ref|YP_004786231.1| - 7.4e-25 87.5 4.6 1.1e-24 86.9 2.5 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|344210055|ref|YP_004786231.1| - 4e-14 52.2 0.5 1.5e-12 47.2 0.1 2.4 2 0 0 2 2 2 1 TrkA-C domain Shikimate_DH PF01488.20 gi|344210055|ref|YP_004786231.1| - 0.0005 20.2 0.2 0.00081 19.5 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|344210055|ref|YP_004786231.1| - 0.00097 19.5 0.9 0.002 18.5 0.3 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|344210055|ref|YP_004786231.1| - 0.0011 19.2 0.5 0.0027 17.9 0.2 1.8 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ADH_zinc_N PF00107.26 gi|344210055|ref|YP_004786231.1| - 0.0022 17.9 0.4 0.0078 16.2 0.5 1.7 1 1 1 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|344210055|ref|YP_004786231.1| - 0.0037 16.6 1.8 0.0058 15.9 1.8 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|344210055|ref|YP_004786231.1| - 0.0042 17.3 0.9 0.0093 16.2 0.9 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|344210055|ref|YP_004786231.1| - 0.005 16.8 3.1 0.0073 16.2 1.8 1.9 1 1 0 1 1 1 1 NAD(P)H-binding XdhC_C PF13478.6 gi|344210055|ref|YP_004786231.1| - 0.0069 16.9 0.1 0.013 16.0 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Pyr_redox PF00070.27 gi|344210055|ref|YP_004786231.1| - 0.011 16.3 0.4 0.043 14.4 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Peripla_BP_3 PF13377.6 gi|344210055|ref|YP_004786231.1| - 0.012 15.9 0.1 0.017 15.4 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein-like domain PEP-utilizers PF00391.23 gi|344210055|ref|YP_004786231.1| - 0.022 14.5 0.0 0.055 13.2 0.0 1.7 1 0 0 1 1 1 0 PEP-utilising enzyme, mobile domain GFO_IDH_MocA PF01408.22 gi|344210055|ref|YP_004786231.1| - 0.033 15.0 0.6 0.1 13.5 0.6 1.8 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.18 gi|344210055|ref|YP_004786231.1| - 0.039 13.8 0.3 0.059 13.2 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|344210055|ref|YP_004786231.1| - 0.04 13.5 1.8 0.18 11.3 0.4 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATPgrasp_N PF18130.1 gi|344210055|ref|YP_004786231.1| - 0.049 14.2 1.8 0.11 13.1 1.8 1.6 1 0 0 1 1 1 0 ATP-grasp N-terminal domain PK_C PF02887.16 gi|344210055|ref|YP_004786231.1| - 0.084 13.1 0.2 0.21 11.8 0.2 1.7 1 1 0 1 1 1 0 Pyruvate kinase, alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|344210055|ref|YP_004786231.1| - 0.085 12.2 0.3 0.24 10.7 0.1 1.8 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|344210055|ref|YP_004786231.1| - 0.39 9.9 3.1 3.5 6.8 1.1 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase p25-alpha PF05517.12 gi|344210056|ref|YP_004786232.1| - 0.091 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 p25-alpha TrkA_C PF02080.21 gi|344210057|ref|YP_004786233.1| - 6.5e-13 48.3 0.6 1.2e-12 47.5 0.6 1.4 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|344210057|ref|YP_004786233.1| - 6e-12 44.9 0.2 1.2e-11 44.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344210057|ref|YP_004786233.1| - 2.6e-11 43.2 0.4 4.9e-11 42.3 0.4 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344210057|ref|YP_004786233.1| - 4.9e-06 26.4 0.0 1.1e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344210057|ref|YP_004786233.1| - 1.7e-05 24.8 0.0 3.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210057|ref|YP_004786233.1| - 8.3e-05 22.3 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|344210057|ref|YP_004786233.1| - 0.00012 21.8 0.1 0.00062 19.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HrcA_DNA-bdg PF03444.15 gi|344210057|ref|YP_004786233.1| - 0.00037 20.1 0.0 0.00063 19.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Fe_dep_repress PF01325.19 gi|344210057|ref|YP_004786233.1| - 0.0013 18.8 0.0 0.0026 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|344210057|ref|YP_004786233.1| - 0.0055 16.6 0.0 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|344210057|ref|YP_004786233.1| - 0.0081 16.3 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|344210057|ref|YP_004786233.1| - 0.0087 15.8 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|344210057|ref|YP_004786233.1| - 0.024 15.0 0.1 0.063 13.6 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator MarR PF01047.22 gi|344210057|ref|YP_004786233.1| - 0.028 14.3 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.6 gi|344210057|ref|YP_004786233.1| - 0.11 12.3 0.1 0.26 11.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|344210057|ref|YP_004786233.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Med11 PF10280.9 gi|344210057|ref|YP_004786233.1| - 0.13 12.7 0.2 3.8 8.0 0.0 2.3 2 1 0 2 2 2 0 Mediator complex protein HTH_13 PF11972.8 gi|344210057|ref|YP_004786233.1| - 0.15 12.2 0.1 4 7.6 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Usp PF00582.26 gi|344210058|ref|YP_004786234.1| - 9.4e-10 39.2 3.8 0.00012 22.6 1.4 3.2 2 2 0 2 2 2 2 Universal stress protein family MafB PF06255.13 gi|344210058|ref|YP_004786234.1| - 0.13 11.7 0.2 0.17 11.3 0.2 1.2 1 0 0 1 1 1 0 Neisseria toxin MafB Nitroreductase PF00881.24 gi|344210059|ref|YP_004786235.1| - 1.9e-17 63.8 0.3 3.9e-08 33.5 0.1 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|344210059|ref|YP_004786235.1| - 6.7e-05 22.5 0.0 0.0002 21.0 0.0 1.7 2 0 0 2 2 2 1 Putative TM nitroreductase LtrA PF06772.11 gi|344210060|ref|YP_004786236.1| - 0.0096 15.2 6.8 0.0096 15.2 6.8 2.7 2 1 1 3 3 3 1 Bacterial low temperature requirement A protein (LtrA) Nudix_N_2 PF14803.6 gi|344210060|ref|YP_004786236.1| - 0.42 10.6 1.1 0.58 10.1 0.3 1.7 2 0 0 2 2 2 0 Nudix N-terminal HTH_Crp_2 PF13545.6 gi|344210061|ref|YP_004786237.1| - 5.2e-09 36.0 0.1 9.4e-09 35.1 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|344210061|ref|YP_004786237.1| - 3.1e-06 27.2 0.3 7.6e-06 25.9 0.3 1.7 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|344210061|ref|YP_004786237.1| - 3.4e-06 26.8 0.1 7.1e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210061|ref|YP_004786237.1| - 0.0001 22.2 0.0 0.00016 21.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210061|ref|YP_004786237.1| - 0.00015 21.3 0.1 0.00024 20.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|344210061|ref|YP_004786237.1| - 0.00031 20.5 0.0 0.00058 19.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344210061|ref|YP_004786237.1| - 0.00047 20.0 0.0 0.00083 19.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|344210061|ref|YP_004786237.1| - 0.00096 19.2 0.3 0.002 18.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Crp PF00325.20 gi|344210061|ref|YP_004786237.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Rrf2 PF02082.20 gi|344210061|ref|YP_004786237.1| - 0.004 17.5 0.0 0.0081 16.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|344210061|ref|YP_004786237.1| - 0.0048 16.7 0.3 0.022 14.6 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.21 gi|344210061|ref|YP_004786237.1| - 0.016 14.8 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|344210061|ref|YP_004786237.1| - 0.018 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.15 gi|344210061|ref|YP_004786237.1| - 0.023 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_3 PF01381.22 gi|344210061|ref|YP_004786237.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix GP17 PF17420.2 gi|344210061|ref|YP_004786237.1| - 0.16 12.2 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Superinfection exclusion gene product 17 ABC_tran PF00005.27 gi|344210062|ref|YP_004786238.1| - 1.3e-24 87.2 0.0 1.9e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210062|ref|YP_004786238.1| - 2.4e-12 47.3 0.0 7.6e-07 29.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system MeaB PF03308.16 gi|344210062|ref|YP_004786238.1| - 6.1e-05 22.1 0.1 9.5e-05 21.5 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SMC_N PF02463.19 gi|344210062|ref|YP_004786238.1| - 0.00016 21.2 0.0 0.15 11.5 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|344210062|ref|YP_004786238.1| - 0.00037 20.3 0.0 0.26 10.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|344210062|ref|YP_004786238.1| - 0.0021 18.6 0.1 0.0034 17.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210062|ref|YP_004786238.1| - 0.0091 15.7 0.0 0.026 14.3 0.0 1.7 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|344210062|ref|YP_004786238.1| - 0.013 15.9 0.0 0.028 14.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344210062|ref|YP_004786238.1| - 0.021 15.2 0.5 1.1 9.7 0.1 2.7 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|344210062|ref|YP_004786238.1| - 0.023 14.5 0.1 0.053 13.3 0.1 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|344210062|ref|YP_004786238.1| - 0.077 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|344210062|ref|YP_004786238.1| - 0.078 13.3 0.0 0.13 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|344210062|ref|YP_004786238.1| - 0.1 12.4 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 MukB N-terminal RsgA_GTPase PF03193.16 gi|344210062|ref|YP_004786238.1| - 0.19 11.6 0.0 0.58 10.0 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|344210062|ref|YP_004786238.1| - 0.22 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|344210062|ref|YP_004786238.1| - 0.29 9.7 0.4 10 4.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain LSPR PF06049.12 gi|344210062|ref|YP_004786238.1| - 0.99 9.5 4.9 27 5.1 0.2 3.7 3 1 0 3 3 3 0 Coagulation Factor V LSPD Repeat DUF2249 PF10006.9 gi|344210064|ref|YP_004786240.1| - 6e-24 83.7 0.2 6.6e-24 83.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2378 PF09536.10 gi|344210066|ref|YP_004786242.1| - 0.015 15.2 0.0 1.7 8.5 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2378) MarR_2 PF12802.7 gi|344210067|ref|YP_004786243.1| - 2.2e-06 27.5 0.7 5.4e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|344210067|ref|YP_004786243.1| - 5.4e-06 26.1 0.0 1.2e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain RP-C PF03428.13 gi|344210067|ref|YP_004786243.1| - 6.7e-05 22.6 2.9 0.00033 20.3 0.0 2.7 3 0 0 3 3 3 1 Replication protein C N-terminal domain MarR PF01047.22 gi|344210067|ref|YP_004786243.1| - 0.00013 21.8 0.0 0.00029 20.7 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|344210067|ref|YP_004786243.1| - 0.0003 20.6 0.0 0.0006 19.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|344210067|ref|YP_004786243.1| - 0.00033 21.1 0.1 0.0018 18.7 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.21 gi|344210067|ref|YP_004786243.1| - 0.011 15.4 1.1 0.036 13.7 0.0 2.4 3 1 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|344210067|ref|YP_004786243.1| - 0.02 14.8 0.0 0.045 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|344210067|ref|YP_004786243.1| - 0.024 15.0 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF1690 PF07956.11 gi|344210067|ref|YP_004786243.1| - 0.12 12.8 4.0 0.19 12.2 4.0 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) Syntaxin-6_N PF09177.11 gi|344210067|ref|YP_004786243.1| - 0.95 10.1 6.7 0.78 10.3 4.3 2.1 2 1 0 2 2 2 0 Syntaxin 6, N-terminal HTH_20 PF12840.7 gi|344210068|ref|YP_004786244.1| - 6.1e-12 45.4 0.3 8.1e-12 45.0 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210068|ref|YP_004786244.1| - 7.3e-07 29.0 0.1 1.4e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344210068|ref|YP_004786244.1| - 1.4e-06 28.0 0.0 3.2e-06 26.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|344210068|ref|YP_004786244.1| - 6e-06 25.7 0.0 1.1e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|344210068|ref|YP_004786244.1| - 8.5e-06 26.2 0.0 5.2e-05 23.7 0.0 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|344210068|ref|YP_004786244.1| - 0.0028 17.9 0.0 0.0034 17.7 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) TrmB PF01978.19 gi|344210068|ref|YP_004786244.1| - 0.0048 16.7 0.0 0.0078 16.1 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|344210068|ref|YP_004786244.1| - 0.0095 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|344210068|ref|YP_004786244.1| - 0.11 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_45 PF14947.6 gi|344210068|ref|YP_004786244.1| - 0.11 12.5 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4 PF04545.16 gi|344210068|ref|YP_004786244.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Fructosamin_kin PF03881.14 gi|344210069|ref|YP_004786245.1| - 4.5e-41 141.0 0.0 5.5e-41 140.7 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|344210069|ref|YP_004786245.1| - 1.3e-14 54.7 5.1 1.7e-14 54.3 5.1 1.1 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 gi|344210069|ref|YP_004786245.1| - 0.0023 17.4 0.0 0.0049 16.3 0.0 1.5 1 0 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase Sugar_tr PF00083.24 gi|344210070|ref|YP_004786246.1| - 2.6e-123 412.2 20.9 3e-123 412.0 20.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|344210070|ref|YP_004786246.1| - 1.4e-42 145.9 77.4 4.5e-33 114.6 42.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|344210070|ref|YP_004786246.1| - 1.9e-08 33.2 2.8 1.9e-08 33.2 2.8 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.7 gi|344210070|ref|YP_004786246.1| - 0.00077 18.4 0.2 0.00077 18.4 0.2 2.8 1 1 1 3 3 3 1 MFS_1 like family Bac_export_3 PF01313.19 gi|344210070|ref|YP_004786246.1| - 0.021 14.8 0.3 0.021 14.8 0.3 3.6 3 1 0 3 3 3 0 Bacterial export proteins, family 3 MFS_3 PF05977.13 gi|344210070|ref|YP_004786246.1| - 0.083 11.3 18.1 0.015 13.7 7.8 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector Usp PF00582.26 gi|344210071|ref|YP_004786247.1| - 1.1e-16 61.6 0.8 1.4e-16 61.3 0.8 1.2 1 0 0 1 1 1 1 Universal stress protein family Peripla_BP_2 PF01497.18 gi|344210072|ref|YP_004786248.1| - 5.2e-19 68.7 0.0 8.3e-19 68.1 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|344210072|ref|YP_004786248.1| - 0.0019 18.0 0.5 0.0033 17.2 0.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Sdh5 PF03937.16 gi|344210072|ref|YP_004786248.1| - 0.14 12.2 0.1 6.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Flavinator of succinate dehydrogenase Peripla_BP_2 PF01497.18 gi|344210073|ref|YP_004786249.1| - 6.5e-24 84.8 0.0 1.1e-23 84.1 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|344210073|ref|YP_004786249.1| - 0.0019 18.0 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence YqgF PF14639.6 gi|344210073|ref|YP_004786249.1| - 0.073 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Holliday-junction resolvase-like of SPT6 Peripla_BP_2 PF01497.18 gi|344210074|ref|YP_004786250.1| - 1.6e-11 44.2 0.0 2.3e-11 43.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HTH_24 PF13412.6 gi|344210075|ref|YP_004786251.1| - 2.8e-12 46.0 0.2 4.4e-12 45.4 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|344210075|ref|YP_004786251.1| - 3.4e-11 42.8 0.9 6.3e-11 41.9 0.9 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|344210075|ref|YP_004786251.1| - 1.2e-05 25.2 0.0 2e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|344210075|ref|YP_004786251.1| - 4.1e-05 23.6 0.0 0.0001 22.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210075|ref|YP_004786251.1| - 0.00016 21.3 0.1 0.005 16.6 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|344210075|ref|YP_004786251.1| - 0.00022 21.0 0.0 0.00042 20.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|344210075|ref|YP_004786251.1| - 0.00026 20.8 0.0 0.00052 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|344210075|ref|YP_004786251.1| - 0.00035 20.3 0.0 0.00063 19.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|344210075|ref|YP_004786251.1| - 0.0005 20.4 0.0 0.0011 19.2 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|344210075|ref|YP_004786251.1| - 0.0014 18.8 0.0 0.0027 17.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|344210075|ref|YP_004786251.1| - 0.0032 17.1 0.0 0.0058 16.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.6 gi|344210075|ref|YP_004786251.1| - 0.0075 16.7 0.1 0.018 15.5 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_19 PF12844.7 gi|344210075|ref|YP_004786251.1| - 0.017 15.1 0.5 0.064 13.3 0.5 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|344210075|ref|YP_004786251.1| - 0.018 15.0 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_Mga PF08280.11 gi|344210075|ref|YP_004786251.1| - 0.022 14.8 0.0 0.036 14.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Tnp_ISL3 PF13542.6 gi|344210075|ref|YP_004786251.1| - 0.051 13.0 0.2 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.22 gi|344210075|ref|YP_004786251.1| - 0.078 12.9 0.0 0.23 11.4 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|344210075|ref|YP_004786251.1| - 0.11 12.5 0.1 0.23 11.4 0.0 1.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|344210075|ref|YP_004786251.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Proton_antipo_M PF00361.20 gi|344210076|ref|YP_004786252.1| - 1.9e-34 119.2 17.4 1.9e-34 119.2 17.4 2.4 1 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|344210076|ref|YP_004786252.1| - 3.1e-07 30.4 0.1 2.6e-06 27.4 0.1 2.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.9 gi|344210077|ref|YP_004786253.1| - 2.8e-264 879.1 0.0 3.1e-264 878.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) Bac_luciferase PF00296.20 gi|344210078|ref|YP_004786254.1| - 6.7e-33 114.4 2.0 7.7e-33 114.2 2.0 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase ADH_N PF08240.12 gi|344210079|ref|YP_004786255.1| - 1.4e-31 108.6 0.4 2.7e-31 107.7 0.4 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210079|ref|YP_004786255.1| - 2e-28 99.0 0.7 2.9e-28 98.5 0.7 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|344210079|ref|YP_004786255.1| - 3.2e-12 46.4 2.9 4.6e-12 45.9 2.9 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|344210079|ref|YP_004786255.1| - 2.2e-05 25.5 0.5 4.4e-05 24.5 0.5 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.16 gi|344210079|ref|YP_004786255.1| - 0.00064 20.4 2.4 0.0011 19.6 2.4 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344210079|ref|YP_004786255.1| - 0.041 13.2 0.1 0.073 12.4 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MR_MLE_C PF13378.6 gi|344210080|ref|YP_004786256.1| - 5.1e-62 209.3 0.2 7.3e-62 208.8 0.2 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210080|ref|YP_004786256.1| - 2.1e-21 76.3 0.0 4.4e-21 75.3 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 gi|344210081|ref|YP_004786257.1| - 4.4e-74 249.0 1.3 4.9e-74 248.8 1.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344210081|ref|YP_004786257.1| - 6.9e-60 201.9 2.8 8.2e-60 201.6 2.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344210081|ref|YP_004786257.1| - 4.1e-14 52.9 0.9 5.7e-14 52.4 0.9 1.2 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|344210081|ref|YP_004786257.1| - 0.0011 19.3 0.1 0.0017 18.6 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KdpD PF02702.17 gi|344210081|ref|YP_004786257.1| - 0.026 14.0 0.3 0.043 13.3 0.3 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Epimerase PF01370.21 gi|344210081|ref|YP_004786257.1| - 0.063 12.7 0.6 0.1 12.1 0.6 1.4 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|344210081|ref|YP_004786257.1| - 0.088 11.8 0.3 0.12 11.4 0.3 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family DUF948 PF06103.11 gi|344210081|ref|YP_004786257.1| - 0.14 12.4 2.0 0.33 11.2 1.7 1.7 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) FGGY_C PF02782.16 gi|344210082|ref|YP_004786258.1| - 3.6e-23 82.3 0.0 5e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain FGGY_N PF00370.21 gi|344210082|ref|YP_004786258.1| - 6.3e-18 65.2 0.0 8.6e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain Aldolase_II PF00596.21 gi|344210083|ref|YP_004786259.1| - 3e-50 170.8 0.3 3.5e-50 170.5 0.3 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain ABC_tran PF00005.27 gi|344210084|ref|YP_004786260.1| - 1.3e-31 109.9 0.0 2.5e-31 109.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|344210084|ref|YP_004786260.1| - 3.1e-13 50.3 0.1 2.8e-12 47.3 0.1 2.6 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|344210084|ref|YP_004786260.1| - 1.3e-10 41.3 0.3 5e-10 39.4 0.1 2.2 2 0 0 2 2 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|344210084|ref|YP_004786260.1| - 7e-09 36.1 0.1 2.4e-08 34.4 0.0 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|344210084|ref|YP_004786260.1| - 1.1e-08 35.3 0.0 0.00066 19.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210084|ref|YP_004786260.1| - 0.00024 20.6 0.3 0.00057 19.4 0.3 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|344210084|ref|YP_004786260.1| - 0.00039 20.4 0.0 0.00077 19.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|344210084|ref|YP_004786260.1| - 0.00045 19.9 0.0 0.00098 18.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|344210084|ref|YP_004786260.1| - 0.0027 17.9 0.0 0.017 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.18 gi|344210084|ref|YP_004786260.1| - 0.0036 17.1 1.0 0.048 13.4 0.7 2.5 2 1 0 2 2 2 1 Cytidylate kinase AAA_22 PF13401.6 gi|344210084|ref|YP_004786260.1| - 0.0041 17.4 0.0 0.013 15.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|344210084|ref|YP_004786260.1| - 0.01 15.5 0.1 0.018 14.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|344210084|ref|YP_004786260.1| - 0.017 14.7 0.1 0.61 9.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|344210084|ref|YP_004786260.1| - 0.017 15.5 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|344210084|ref|YP_004786260.1| - 0.025 15.0 0.1 0.079 13.4 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|344210084|ref|YP_004786260.1| - 0.027 15.0 0.0 0.052 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain TOBE PF03459.17 gi|344210084|ref|YP_004786260.1| - 0.027 14.8 0.0 0.1 12.9 0.0 2.0 1 0 0 1 1 1 0 TOBE domain DraK_HK_N PF18092.1 gi|344210084|ref|YP_004786260.1| - 0.046 14.1 0.6 3.4 8.2 0.1 3.2 3 0 0 3 3 3 0 DraK Histidine Kinase N-terminal domain AAA_28 PF13521.6 gi|344210084|ref|YP_004786260.1| - 0.06 13.6 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain SAM_LFY PF01698.16 gi|344210084|ref|YP_004786260.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Floricaula / Leafy protein SAM domain AAA_15 PF13175.6 gi|344210084|ref|YP_004786260.1| - 0.076 12.7 0.0 0.14 11.8 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.6 gi|344210084|ref|YP_004786260.1| - 0.099 13.2 0.0 0.21 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|344210084|ref|YP_004786260.1| - 0.11 11.5 0.1 0.49 9.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MMR_HSR1 PF01926.23 gi|344210084|ref|YP_004786260.1| - 0.12 12.5 0.2 0.36 10.9 0.2 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|344210084|ref|YP_004786260.1| - 0.14 12.6 0.1 0.29 11.5 0.1 1.7 1 1 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|344210085|ref|YP_004786261.1| - 3.7e-17 62.7 19.1 3.7e-17 62.7 19.1 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PMT_4TMC PF16192.5 gi|344210085|ref|YP_004786261.1| - 0.62 9.6 10.8 2.4 7.7 8.3 3.0 1 1 1 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase TMEMspv1-c74-12 PF11044.8 gi|344210085|ref|YP_004786261.1| - 2.9 7.9 5.8 0.35 10.9 0.7 2.2 2 0 0 2 2 2 0 Plectrovirus spv1-c74 ORF 12 transmembrane protein BPD_transp_1 PF00528.22 gi|344210086|ref|YP_004786262.1| - 2.8e-18 66.3 21.4 2.8e-18 66.3 21.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|344210087|ref|YP_004786263.1| - 4.1e-25 89.4 3.2 6.1e-25 88.8 3.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344210087|ref|YP_004786263.1| - 0.013 15.3 1.0 0.023 14.5 1.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ADH_N PF08240.12 gi|344210088|ref|YP_004786264.1| - 2.5e-33 114.2 3.2 2.5e-33 114.2 3.2 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210088|ref|YP_004786264.1| - 4.7e-21 75.1 0.0 7.5e-21 74.5 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|344210088|ref|YP_004786264.1| - 4.4e-10 39.4 0.0 8.9e-10 38.4 0.0 1.5 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|344210088|ref|YP_004786264.1| - 5.3e-05 24.3 0.0 9.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase F420_oxidored PF03807.17 gi|344210088|ref|YP_004786264.1| - 0.00067 20.2 0.0 0.0013 19.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|344210088|ref|YP_004786264.1| - 0.025 14.8 0.0 0.056 13.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NTP_transf_3 PF12804.7 gi|344210088|ref|YP_004786264.1| - 0.038 14.3 0.1 0.067 13.5 0.1 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Rossmann-like PF10727.9 gi|344210088|ref|YP_004786264.1| - 0.047 13.6 0.1 0.13 12.1 0.1 1.8 1 1 1 2 2 2 0 Rossmann-like domain FAD_binding_3 PF01494.19 gi|344210088|ref|YP_004786264.1| - 0.15 11.3 0.1 0.22 10.7 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain IclR PF01614.18 gi|344210089|ref|YP_004786265.1| - 4e-29 101.1 0.0 3.9e-28 97.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344210089|ref|YP_004786265.1| - 8.4e-11 41.5 0.4 2.4e-10 40.1 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|344210089|ref|YP_004786265.1| - 2.3e-07 30.6 0.0 3.6e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|344210089|ref|YP_004786265.1| - 1e-05 25.4 0.0 3.3e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|344210089|ref|YP_004786265.1| - 2.6e-05 24.0 0.1 6.5e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344210089|ref|YP_004786265.1| - 7.6e-05 22.7 0.1 0.0002 21.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210089|ref|YP_004786265.1| - 0.00045 19.7 0.0 0.0008 18.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344210089|ref|YP_004786265.1| - 0.0005 19.9 0.1 0.0011 18.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|344210089|ref|YP_004786265.1| - 0.0046 17.3 0.1 0.0085 16.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|344210089|ref|YP_004786265.1| - 0.0062 16.7 0.1 0.013 15.7 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.6 gi|344210089|ref|YP_004786265.1| - 0.016 15.3 0.0 0.028 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FaeA PF04703.12 gi|344210089|ref|YP_004786265.1| - 0.038 14.4 0.0 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 FaeA-like protein MarR PF01047.22 gi|344210089|ref|YP_004786265.1| - 0.044 13.7 0.0 0.073 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|344210089|ref|YP_004786265.1| - 0.13 12.1 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HEAT_2 PF13646.6 gi|344210090|ref|YP_004786266.1| - 1.7e-13 50.8 10.4 8e-08 32.6 1.0 3.3 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.6 gi|344210090|ref|YP_004786266.1| - 1e-08 35.5 8.6 0.016 15.7 0.2 4.8 2 1 3 5 5 5 4 HEAT-like repeat HEAT PF02985.22 gi|344210090|ref|YP_004786266.1| - 1.6e-08 34.1 1.4 0.08 13.2 0.0 5.0 5 0 0 5 5 5 2 HEAT repeat Cnd1 PF12717.7 gi|344210090|ref|YP_004786266.1| - 0.0002 21.5 0.0 0.5 10.4 0.0 2.6 1 1 1 2 2 2 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|344210090|ref|YP_004786266.1| - 0.0048 15.5 0.1 0.94 8.0 0.1 2.6 1 1 2 3 3 3 2 Adaptin N terminal region DZR PF12773.7 gi|344210090|ref|YP_004786266.1| - 0.0099 15.9 0.3 0.022 14.8 0.3 1.6 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|344210090|ref|YP_004786266.1| - 0.011 15.5 4.7 0.02 14.6 4.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|344210090|ref|YP_004786266.1| - 0.05 13.0 6.7 0.11 11.9 6.7 1.6 1 0 0 1 1 1 0 zinc-ribbon domain IFRD PF05004.13 gi|344210090|ref|YP_004786266.1| - 0.074 12.2 0.1 1.9 7.5 0.0 2.3 2 1 0 2 2 2 0 Interferon-related developmental regulator (IFRD) TPR_4 PF07721.14 gi|344210090|ref|YP_004786266.1| - 0.41 11.4 7.9 14 6.6 0.1 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat HEAT_PBS PF03130.16 gi|344210090|ref|YP_004786266.1| - 0.81 10.5 13.9 11 7.0 0.2 5.4 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat LUD_dom PF02589.15 gi|344210091|ref|YP_004786267.1| - 2.2e-16 60.1 0.6 3e-15 56.4 0.0 1.9 1 1 1 2 2 2 2 LUD domain LUD_dom PF02589.15 gi|344210092|ref|YP_004786268.1| - 5.4e-42 143.7 0.2 1e-41 142.8 0.2 1.5 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|344210092|ref|YP_004786268.1| - 1.6e-08 34.9 3.0 3.5e-08 33.8 3.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344210092|ref|YP_004786268.1| - 7e-08 32.5 3.7 0.00024 21.1 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344210092|ref|YP_004786268.1| - 8.1e-07 29.1 3.3 2e-06 27.9 3.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|344210092|ref|YP_004786268.1| - 8.5e-07 29.4 2.1 1.6e-06 28.5 2.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344210092|ref|YP_004786268.1| - 2e-06 28.3 5.6 4.7e-06 27.1 5.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|344210092|ref|YP_004786268.1| - 0.0001 22.5 1.0 0.013 15.7 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344210092|ref|YP_004786268.1| - 0.00016 21.3 13.8 0.00021 21.0 3.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344210092|ref|YP_004786268.1| - 0.00025 21.0 2.7 0.00025 21.0 2.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|344210092|ref|YP_004786268.1| - 0.00026 21.0 8.8 0.0014 18.7 8.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|344210092|ref|YP_004786268.1| - 0.0011 19.8 3.7 0.04 14.9 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|344210092|ref|YP_004786268.1| - 0.01 15.9 15.3 0.04 14.0 4.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|344210092|ref|YP_004786268.1| - 0.03 14.8 3.2 0.03 14.8 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|344210092|ref|YP_004786268.1| - 0.041 14.8 5.9 0.041 14.8 5.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|344210092|ref|YP_004786268.1| - 0.052 13.3 3.4 0.1 12.4 0.2 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|344210092|ref|YP_004786268.1| - 0.11 13.4 7.8 0.11 13.3 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DUF362 PF04015.12 gi|344210093|ref|YP_004786269.1| - 0.00021 21.6 0.0 0.00041 20.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Lar_N PF09861.9 gi|344210093|ref|YP_004786269.1| - 0.00042 19.6 0.0 0.00065 18.9 0.0 1.2 1 0 0 1 1 1 1 Lactate racemase N-terminal domain DUF4147 PF13660.6 gi|344210094|ref|YP_004786270.1| - 2.8e-70 236.4 1.1 3.8e-70 236.0 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|344210094|ref|YP_004786270.1| - 1.9e-25 89.1 7.7 1.9e-25 89.1 7.7 2.1 2 0 0 2 2 2 1 MOFRL family Glyco_hydro_88 PF07470.13 gi|344210095|ref|YP_004786271.1| - 1.1e-57 195.7 0.0 1.4e-57 195.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Glyco_hydro_127 PF07944.12 gi|344210095|ref|YP_004786271.1| - 0.076 11.5 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 Beta-L-arabinofuranosidase, GH127 VCBS PF13517.6 gi|344210096|ref|YP_004786272.1| - 9.4e-29 99.8 22.2 5.8e-10 39.6 1.9 5.5 3 2 2 5 5 5 5 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|344210096|ref|YP_004786272.1| - 3e-22 78.4 30.3 0.018 15.2 0.0 7.3 7 0 0 7 7 7 7 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|344210096|ref|YP_004786272.1| - 4.2e-08 32.8 7.6 0.22 10.9 0.0 6.1 5 1 2 7 7 7 3 Insecticide toxin TcdB middle/N-terminal region PliI PF16743.5 gi|344210096|ref|YP_004786272.1| - 3.4e-06 26.8 5.1 6.2 6.6 0.0 6.3 3 2 3 7 7 7 2 Periplasmic lysozyme inhibitor of I-type lysozyme Itfg2 PF15907.5 gi|344210096|ref|YP_004786272.1| - 5.5e-05 22.4 7.2 1.3 8.0 0.2 5.1 3 1 1 5 5 5 3 Integrin-alpha FG-GAP repeat-containing protein 2 BBS2_Mid PF14783.6 gi|344210096|ref|YP_004786272.1| - 0.00024 21.1 2.6 3.8 7.6 0.0 5.0 5 0 0 5 5 5 2 Ciliary BBSome complex subunit 2, middle region UDPG_MGDP_dh_N PF03721.14 gi|344210097|ref|YP_004786273.1| - 2.6e-43 147.8 0.0 4.2e-43 147.1 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|344210097|ref|YP_004786273.1| - 3.1e-23 81.8 0.0 5.2e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|344210097|ref|YP_004786273.1| - 9.2e-18 64.6 0.0 2.7e-17 63.1 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.17 gi|344210097|ref|YP_004786273.1| - 0.0036 17.8 0.0 1.7 9.3 0.0 3.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|344210097|ref|YP_004786273.1| - 0.0071 16.5 0.0 0.037 14.2 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|344210097|ref|YP_004786273.1| - 0.0076 16.1 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|344210097|ref|YP_004786273.1| - 0.013 15.1 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|344210097|ref|YP_004786273.1| - 0.014 14.8 0.0 0.088 12.2 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|344210097|ref|YP_004786273.1| - 0.015 15.6 0.0 1.2 9.4 0.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|344210097|ref|YP_004786273.1| - 0.023 15.0 0.1 0.18 12.1 0.0 2.5 2 1 0 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|344210097|ref|YP_004786273.1| - 0.09 12.8 0.0 0.63 10.0 0.0 2.4 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|344210097|ref|YP_004786273.1| - 0.17 12.5 0.0 0.72 10.4 0.0 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Polysacc_synt_3 PF13440.6 gi|344210098|ref|YP_004786274.1| - 8.2e-79 264.9 3.3 8.2e-79 264.9 3.3 2.1 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|344210098|ref|YP_004786274.1| - 7.8e-34 117.3 4.0 7.8e-34 117.3 4.0 3.1 3 1 1 4 4 4 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|344210098|ref|YP_004786274.1| - 5e-06 26.6 16.9 5e-06 26.6 16.9 2.8 3 0 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Glycos_transf_1 PF00534.20 gi|344210099|ref|YP_004786275.1| - 1.7e-32 112.3 0.0 7.3e-32 110.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210099|ref|YP_004786275.1| - 3.9e-27 95.3 0.0 6.8e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210099|ref|YP_004786275.1| - 1.7e-15 57.4 0.0 4.2e-15 56.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210099|ref|YP_004786275.1| - 4.2e-11 43.5 0.1 7.6e-11 42.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210099|ref|YP_004786275.1| - 1.7e-05 25.1 0.0 4.2e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344210099|ref|YP_004786275.1| - 0.00071 19.6 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like DUF1616 PF07760.11 gi|344210101|ref|YP_004786277.1| - 2e-64 217.8 6.7 2.4e-64 217.6 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Sulfatase PF00884.23 gi|344210103|ref|YP_004786279.1| - 7.7e-37 127.3 0.8 1.1e-36 126.8 0.8 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|344210103|ref|YP_004786279.1| - 0.00028 20.6 0.7 0.0021 17.7 0.7 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|344210104|ref|YP_004786280.1| - 0.00083 18.8 0.4 0.0011 18.4 0.4 1.2 1 0 0 1 1 1 1 Sulfatase PglZ PF08665.12 gi|344210104|ref|YP_004786280.1| - 0.0065 16.6 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 PglZ domain Pectate_lyase_3 PF12708.7 gi|344210105|ref|YP_004786281.1| - 6.7e-16 58.8 9.1 7e-15 55.4 0.2 3.6 1 1 0 3 3 3 2 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|344210105|ref|YP_004786281.1| - 6.6e-06 26.1 12.5 0.0014 18.5 9.3 3.0 1 1 1 2 2 2 2 Right handed beta helix region End_N_terminal PF12218.8 gi|344210105|ref|YP_004786281.1| - 0.026 14.2 0.2 0.069 12.9 0.2 1.7 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase Sulfatase PF00884.23 gi|344210106|ref|YP_004786282.1| - 0.00011 21.7 0.2 0.00013 21.5 0.2 1.1 1 0 0 1 1 1 1 Sulfatase Pectate_lyase_3 PF12708.7 gi|344210107|ref|YP_004786283.1| - 1.2e-11 44.9 6.1 9.7e-11 41.9 2.9 3.3 1 1 1 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.6 gi|344210107|ref|YP_004786283.1| - 0.0003 20.7 3.7 0.0003 20.7 3.7 2.7 2 1 0 2 2 2 1 Right handed beta helix region ChlamPMP_M PF07548.11 gi|344210107|ref|YP_004786283.1| - 0.13 12.2 0.3 0.64 9.9 0.0 2.1 2 0 0 2 2 2 0 Chlamydia polymorphic membrane protein middle domain Glycos_transf_2 PF00535.26 gi|344210108|ref|YP_004786284.1| - 5.5e-28 97.9 1.0 7.9e-28 97.4 0.5 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210108|ref|YP_004786284.1| - 7.8e-17 61.9 0.2 1.3e-16 61.3 0.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344210108|ref|YP_004786284.1| - 1.1e-09 38.2 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_2 PF07719.17 gi|344210108|ref|YP_004786284.1| - 0.071 13.3 0.9 0.18 12.0 0.9 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Glyco_transf_64 PF09258.10 gi|344210108|ref|YP_004786284.1| - 0.17 11.2 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain Epimerase_2 PF02350.19 gi|344210109|ref|YP_004786285.1| - 1.7e-102 342.8 0.0 2e-102 342.6 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.6 gi|344210109|ref|YP_004786285.1| - 0.073 13.1 0.0 0.17 11.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210109|ref|YP_004786285.1| - 0.11 12.9 0.0 0.38 11.2 0.0 1.9 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain MGDG_synth PF06925.11 gi|344210109|ref|YP_004786285.1| - 0.22 11.6 0.0 0.44 10.6 0.0 1.5 1 0 0 1 1 1 0 Monogalactosyldiacylglycerol (MGDG) synthase Glycos_transf_1 PF00534.20 gi|344210110|ref|YP_004786286.1| - 3.7e-29 101.5 0.0 5.3e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210110|ref|YP_004786286.1| - 2.3e-23 83.1 0.0 5.1e-23 82.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210110|ref|YP_004786286.1| - 1.5e-12 47.9 0.1 3.5e-12 46.7 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210110|ref|YP_004786286.1| - 3.7e-11 43.7 0.5 8.8e-10 39.2 0.0 2.7 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210110|ref|YP_004786286.1| - 1e-06 29.0 0.0 2.9e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Hepar_II_III PF07940.13 gi|344210111|ref|YP_004786287.1| - 6e-36 124.2 2.1 1.4e-35 123.0 2.1 1.6 1 0 0 1 1 1 1 Heparinase II/III-like protein Hepar_II_III_N PF16889.5 gi|344210111|ref|YP_004786287.1| - 1.6e-19 70.4 0.0 2.3e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Heparinase II/III N-terminus Glyco_trans_1_4 PF13692.6 gi|344210112|ref|YP_004786288.1| - 1.4e-19 70.9 0.0 2.4e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|344210112|ref|YP_004786288.1| - 2.1e-16 60.8 0.8 3.4e-16 60.1 0.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|344210112|ref|YP_004786288.1| - 2.7e-15 56.3 0.0 3.9e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210112|ref|YP_004786288.1| - 5.3e-11 42.8 0.1 1.7e-10 41.2 0.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|344210112|ref|YP_004786288.1| - 1.2e-05 25.6 0.0 2.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|344210113|ref|YP_004786289.1| - 7.1e-09 35.7 0.0 2.3e-08 34.1 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|344210113|ref|YP_004786289.1| - 1.1e-07 31.6 0.0 0.0073 15.8 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|344210113|ref|YP_004786289.1| - 5.5e-06 26.4 0.0 0.03 14.2 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|344210113|ref|YP_004786289.1| - 0.00048 19.6 0.0 0.024 14.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|344210113|ref|YP_004786289.1| - 0.00049 19.7 0.0 0.00079 19.0 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_trans_2_3 PF13632.6 gi|344210113|ref|YP_004786289.1| - 0.00079 19.4 0.0 0.0026 17.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 PTS_IIB PF02302.17 gi|344210114|ref|YP_004786290.1| - 5.8e-17 62.2 1.6 8.1e-17 61.7 1.6 1.2 1 0 0 1 1 1 1 PTS system, Lactose/Cellobiose specific IIB subunit PEP-utilizers_C PF02896.18 gi|344210115|ref|YP_004786291.1| - 7.3e-106 353.6 0.0 9.8e-106 353.1 0.0 1.1 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilisers_N PF05524.13 gi|344210115|ref|YP_004786291.1| - 3e-24 85.4 0.2 3e-24 85.4 0.2 2.9 4 0 0 4 4 4 1 PEP-utilising enzyme, N-terminal PEP-utilizers PF00391.23 gi|344210115|ref|YP_004786291.1| - 4.3e-22 77.6 0.4 8.5e-22 76.7 0.4 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PTS-HPr PF00381.19 gi|344210116|ref|YP_004786292.1| - 5.1e-23 81.1 0.1 5.7e-23 81.0 0.1 1.0 1 0 0 1 1 1 1 PTS HPr component phosphorylation site PTS_EIIA_2 PF00359.22 gi|344210117|ref|YP_004786293.1| - 8.5e-35 119.8 0.0 9.6e-35 119.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PTS_EIIC PF02378.18 gi|344210118|ref|YP_004786294.1| - 3.7e-21 75.5 37.7 3.7e-21 75.5 37.7 1.9 2 0 0 2 2 2 2 Phosphotransferase system, EIIC Seryl_tRNA_N PF02403.22 gi|344210119|ref|YP_004786295.1| - 1.5e-06 28.4 44.9 0.0012 19.1 11.1 6.0 2 2 4 6 6 6 3 Seryl-tRNA synthetase N-terminal domain DUF812 PF05667.11 gi|344210119|ref|YP_004786295.1| - 3.7e-06 26.1 29.9 0.00013 21.0 6.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF812) Spc7 PF08317.11 gi|344210119|ref|YP_004786295.1| - 7.5e-06 25.0 49.1 0.00011 21.2 13.3 4.3 2 2 1 3 3 3 2 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|344210119|ref|YP_004786295.1| - 8.7e-06 26.0 35.9 0.29 11.6 0.2 7.0 5 2 1 6 6 6 4 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|344210119|ref|YP_004786295.1| - 1.3e-05 25.3 43.8 0.0062 16.6 12.5 4.8 2 2 2 4 4 4 2 TPR/MLP1/MLP2-like protein HMMR_N PF15905.5 gi|344210119|ref|YP_004786295.1| - 2.4e-05 24.0 33.5 0.0028 17.2 14.7 2.5 2 0 0 2 2 2 2 Hyaluronan mediated motility receptor N-terminal EzrA PF06160.12 gi|344210119|ref|YP_004786295.1| - 0.00013 20.3 34.5 0.0011 17.2 15.0 2.7 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA Atg14 PF10186.9 gi|344210119|ref|YP_004786295.1| - 0.00035 19.8 35.1 0.0015 17.7 2.4 3.7 2 2 2 4 4 4 2 Vacuolar sorting 38 and autophagy-related subunit 14 FapA PF03961.13 gi|344210119|ref|YP_004786295.1| - 0.0004 19.1 23.3 0.016 13.9 3.4 3.8 1 1 1 3 3 3 2 Flagellar Assembly Protein A GAS PF13851.6 gi|344210119|ref|YP_004786295.1| - 0.00058 19.3 36.7 0.044 13.1 11.7 3.9 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|344210119|ref|YP_004786295.1| - 0.0012 19.0 28.0 1.1 9.4 4.4 4.4 4 0 0 4 4 4 2 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|344210119|ref|YP_004786295.1| - 0.0024 18.3 33.3 2.1 8.9 2.7 7.1 3 3 3 6 6 6 2 Nucleopolyhedrovirus P10 protein Golgin_A5 PF09787.9 gi|344210119|ref|YP_004786295.1| - 0.0044 16.5 51.1 0.091 12.2 14.8 4.1 1 1 3 4 4 4 2 Golgin subfamily A member 5 Fez1 PF06818.15 gi|344210119|ref|YP_004786295.1| - 0.0071 16.8 42.7 1.3 9.4 18.3 3.6 1 1 2 3 3 3 2 Fez1 BLOC1_2 PF10046.9 gi|344210119|ref|YP_004786295.1| - 0.0082 16.4 32.6 3.5 8.0 0.5 6.7 3 2 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_13 PF13166.6 gi|344210119|ref|YP_004786295.1| - 0.015 14.0 31.7 0.047 12.3 14.3 2.3 1 1 1 2 2 2 0 AAA domain Baculo_PEP_C PF04513.12 gi|344210119|ref|YP_004786295.1| - 0.052 13.6 27.7 0.14 12.2 2.3 5.4 2 2 3 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus DivIC PF04977.15 gi|344210119|ref|YP_004786295.1| - 0.07 12.9 57.6 0.05 13.4 1.5 8.1 2 2 3 7 7 7 0 Septum formation initiator DHR10 PF18595.1 gi|344210119|ref|YP_004786295.1| - 0.11 12.6 66.7 0.022 14.8 12.8 5.6 2 2 2 4 4 4 0 Designed helical repeat protein 10 domain kleA_kleC PF17383.2 gi|344210119|ref|YP_004786295.1| - 0.11 12.8 35.6 0.036 14.4 2.8 5.7 3 2 3 6 6 6 0 Uncharacterized KorC regulated protein A TMF_TATA_bd PF12325.8 gi|344210119|ref|YP_004786295.1| - 0.14 12.4 52.3 0.32 11.2 6.9 4.8 2 2 2 4 4 4 0 TATA element modulatory factor 1 TATA binding HemX PF04375.14 gi|344210119|ref|YP_004786295.1| - 0.16 11.3 27.1 0.092 12.0 1.7 4.1 2 2 1 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase FUSC PF04632.12 gi|344210119|ref|YP_004786295.1| - 0.16 10.5 38.0 0.47 8.9 15.4 2.6 1 1 2 3 3 3 0 Fusaric acid resistance protein family IFT57 PF10498.9 gi|344210119|ref|YP_004786295.1| - 0.17 10.9 31.5 0.028 13.4 5.6 3.9 2 1 1 4 4 4 0 Intra-flagellar transport protein 57 DUF1664 PF07889.12 gi|344210119|ref|YP_004786295.1| - 0.25 11.4 32.6 1.2 9.2 3.4 5.4 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) COG2 PF06148.11 gi|344210119|ref|YP_004786295.1| - 0.28 11.3 29.3 2.4 8.3 0.5 5.4 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_23 PF13476.6 gi|344210119|ref|YP_004786295.1| - 0.29 11.6 37.1 1.8e+04 -6.1 37.1 4.1 1 1 0 1 1 0 0 AAA domain DUF4763 PF15960.5 gi|344210119|ref|YP_004786295.1| - 0.3 10.4 29.9 1.1 8.5 0.4 4.7 3 2 2 5 5 5 0 Domain of unknown function (DUF4763) Shugoshin_N PF07558.11 gi|344210119|ref|YP_004786295.1| - 0.3 11.0 9.5 0.57 10.1 0.2 4.2 4 0 0 4 4 3 0 Shugoshin N-terminal coiled-coil region STAT_alpha PF01017.20 gi|344210119|ref|YP_004786295.1| - 0.31 10.9 28.1 1.5 8.6 4.9 3.5 2 2 1 3 3 3 0 STAT protein, all-alpha domain DUF4407 PF14362.6 gi|344210119|ref|YP_004786295.1| - 0.36 10.1 40.5 1.8 7.8 13.7 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) APG6_N PF17675.1 gi|344210119|ref|YP_004786295.1| - 0.37 11.3 64.4 0.98 9.9 7.0 5.3 2 2 3 5 5 5 0 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|344210119|ref|YP_004786295.1| - 0.39 10.7 53.1 1.9 8.5 13.5 5.6 3 2 1 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.19 gi|344210119|ref|YP_004786295.1| - 0.43 10.4 51.8 0.11 12.3 15.3 3.5 2 2 1 3 3 3 0 Ezrin/radixin/moesin family ATG16 PF08614.11 gi|344210119|ref|YP_004786295.1| - 0.43 10.8 62.0 0.06 13.6 17.5 4.3 1 1 2 4 4 4 0 Autophagy protein 16 (ATG16) Retrotrans_gag PF03732.17 gi|344210119|ref|YP_004786295.1| - 0.46 10.8 0.1 0.46 10.8 0.1 3.9 3 2 2 5 5 4 0 Retrotransposon gag protein Spectrin PF00435.21 gi|344210119|ref|YP_004786295.1| - 0.48 10.9 37.4 0.43 11.1 3.6 5.8 2 2 2 5 5 5 0 Spectrin repeat Prefoldin PF02996.17 gi|344210119|ref|YP_004786295.1| - 0.63 10.0 34.8 0.88 9.5 0.4 7.4 3 2 5 8 8 8 0 Prefoldin subunit DUF745 PF05335.13 gi|344210119|ref|YP_004786295.1| - 0.75 9.5 9.8 0.58 9.9 0.8 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF745) KASH_CCD PF14662.6 gi|344210119|ref|YP_004786295.1| - 0.77 9.6 43.0 2.6 7.8 20.7 3.6 2 2 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH TMF_DNA_bd PF12329.8 gi|344210119|ref|YP_004786295.1| - 0.82 9.7 36.3 6.1 6.9 2.0 6.0 3 2 3 6 6 6 0 TATA element modulatory factor 1 DNA binding Occludin_ELL PF07303.13 gi|344210119|ref|YP_004786295.1| - 0.85 10.4 19.2 2.4 8.9 0.4 5.3 3 2 3 6 6 6 0 Occludin homology domain MAD PF05557.13 gi|344210119|ref|YP_004786295.1| - 1.1 7.5 45.2 0.6 8.4 17.4 2.7 2 2 0 2 2 2 0 Mitotic checkpoint protein Filament PF00038.21 gi|344210119|ref|YP_004786295.1| - 1.1 8.7 53.1 2.8 7.4 7.4 3.9 2 2 1 3 3 3 0 Intermediate filament protein Zw10 PF06248.13 gi|344210119|ref|YP_004786295.1| - 1.1 7.7 22.5 0.02 13.5 4.6 3.3 2 1 1 3 3 3 0 Centromere/kinetochore Zw10 DUF4201 PF13870.6 gi|344210119|ref|YP_004786295.1| - 1.2 8.8 39.2 0.62 9.8 5.7 4.3 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) FliD_N PF02465.18 gi|344210119|ref|YP_004786295.1| - 1.3 9.8 9.7 55 4.5 1.5 4.8 3 2 1 4 4 3 0 Flagellar hook-associated protein 2 N-terminus DUF724 PF05266.14 gi|344210119|ref|YP_004786295.1| - 2.6 7.8 32.5 0.78 9.5 7.0 4.0 2 2 2 4 4 4 0 Protein of unknown function (DUF724) DUF3584 PF12128.8 gi|344210119|ref|YP_004786295.1| - 2.8 5.4 47.6 0.72 7.3 20.5 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) Laminin_II PF06009.12 gi|344210119|ref|YP_004786295.1| - 3.3 7.7 30.4 0.14 12.2 5.4 3.9 2 2 0 3 3 3 0 Laminin Domain II YabA PF06156.13 gi|344210119|ref|YP_004786295.1| - 3.6 8.3 32.5 3.4 8.4 1.7 5.2 2 2 3 5 5 5 0 Initiation control protein YabA DUF2203 PF09969.9 gi|344210119|ref|YP_004786295.1| - 4.5 8.0 32.9 0.27 12.0 2.0 4.8 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) LXG PF04740.12 gi|344210119|ref|YP_004786295.1| - 4.8 6.8 25.7 0.5 10.0 2.1 4.7 2 1 1 3 3 3 0 LXG domain of WXG superfamily ABC_tran_CTD PF16326.5 gi|344210119|ref|YP_004786295.1| - 5.1 7.4 51.8 9.4 6.6 0.1 7.6 3 2 5 8 8 8 0 ABC transporter C-terminal domain Sec34 PF04136.15 gi|344210119|ref|YP_004786295.1| - 5.1 7.0 24.4 4.8 7.0 3.7 4.9 2 2 2 4 4 4 0 Sec34-like family Mod_r PF07200.13 gi|344210119|ref|YP_004786295.1| - 5.2 7.2 36.5 3 7.9 6.8 4.5 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Exonuc_VII_L PF02601.15 gi|344210119|ref|YP_004786295.1| - 5.5 6.5 28.1 6.3 6.3 11.9 2.7 1 1 1 2 2 2 0 Exonuclease VII, large subunit TBK1_CCD1 PF18394.1 gi|344210119|ref|YP_004786295.1| - 5.7 6.4 24.3 0.68 9.4 5.4 3.8 2 1 1 3 3 3 0 TANK-binding kinase 1 coiled-coil domain 1 FlxA PF14282.6 gi|344210119|ref|YP_004786295.1| - 7.3 6.6 23.2 0.57 10.2 0.5 4.6 2 2 1 4 4 3 0 FlxA-like protein DUF3153 PF11353.8 gi|344210119|ref|YP_004786295.1| - 7.5 6.1 9.2 0.3 10.6 1.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3153) HOOK PF05622.12 gi|344210119|ref|YP_004786295.1| - 8.5 4.4 49.7 0.096 10.8 23.8 2.5 1 1 2 3 3 3 0 HOOK protein Baculo_p24 PF05073.12 gi|344210119|ref|YP_004786295.1| - 8.6 6.1 11.8 2.3 7.9 1.3 3.1 2 1 0 2 2 2 0 Baculovirus P24 capsid protein Bacillus_HBL PF05791.11 gi|344210119|ref|YP_004786295.1| - 8.6 6.1 18.9 1.4 8.7 4.6 4.1 3 1 2 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) AKNA PF12443.8 gi|344210119|ref|YP_004786295.1| - 9.1 7.0 11.8 6.4 7.5 0.2 4.3 2 2 0 4 4 2 0 AT-hook-containing transcription factor DUF4200 PF13863.6 gi|344210119|ref|YP_004786295.1| - 10 6.6 46.1 0.8 10.1 6.2 5.8 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) SCAB-ABD PF16711.5 gi|344210120|ref|YP_004786296.1| - 0.029 14.3 0.2 0.081 12.8 0.2 1.8 1 0 0 1 1 1 0 Actin-binding domain of plant-specific actin-binding protein zinc_ribbon_4 PF13717.6 gi|344210120|ref|YP_004786296.1| - 0.054 13.4 0.0 0.098 12.6 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DUF2951 PF11166.8 gi|344210122|ref|YP_004786298.1| - 0.077 13.2 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) DUF357 PF04010.13 gi|344210122|ref|YP_004786298.1| - 0.1 12.7 0.1 0.52 10.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF357) GCV_T PF01571.21 gi|344210123|ref|YP_004786299.1| - 1.2e-62 211.6 0.1 2e-62 210.9 0.1 1.4 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|344210123|ref|YP_004786299.1| - 2.2e-43 149.2 0.1 2.2e-43 149.2 0.1 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAO_M PF16350.5 gi|344210123|ref|YP_004786299.1| - 6.8e-19 67.9 0.2 2.1e-18 66.4 0.2 1.9 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain GCV_T_C PF08669.11 gi|344210123|ref|YP_004786299.1| - 1.3e-10 41.1 0.0 3.1e-10 39.8 0.0 1.7 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain Pyr_redox_2 PF07992.14 gi|344210123|ref|YP_004786299.1| - 6.7e-06 25.5 0.0 0.024 13.9 0.0 2.4 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210123|ref|YP_004786299.1| - 2e-05 24.0 0.0 0.0086 15.4 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase SoxG PF04268.12 gi|344210123|ref|YP_004786299.1| - 0.00014 22.0 0.0 0.00025 21.2 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family NAD_binding_9 PF13454.6 gi|344210123|ref|YP_004786299.1| - 0.00047 20.2 0.9 0.94 9.5 0.1 3.2 3 0 0 3 3 3 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|344210123|ref|YP_004786299.1| - 0.00086 19.5 0.0 0.0033 17.6 0.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|344210123|ref|YP_004786299.1| - 0.0019 17.3 0.1 0.0032 16.6 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|344210123|ref|YP_004786299.1| - 0.016 13.9 0.0 0.034 12.9 0.0 1.5 2 0 0 2 2 2 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|344210123|ref|YP_004786299.1| - 0.17 11.2 0.1 0.51 9.6 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ETF PF01012.21 gi|344210124|ref|YP_004786300.1| - 7.5e-32 110.7 2.2 1.1e-31 110.2 2.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|344210125|ref|YP_004786301.1| - 4.3e-33 113.2 1.0 4.3e-33 113.2 1.0 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|344210125|ref|YP_004786301.1| - 2.7e-27 95.8 2.4 3e-27 95.7 1.6 1.5 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Cupin_2 PF07883.11 gi|344210126|ref|YP_004786302.1| - 0.0012 18.5 3.6 0.0017 18.1 3.6 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_7 PF12973.7 gi|344210126|ref|YP_004786302.1| - 0.025 14.5 0.1 0.051 13.5 0.1 1.5 1 1 1 2 2 2 0 ChrR Cupin-like domain FTCD_C PF04961.12 gi|344210127|ref|YP_004786303.1| - 2.8e-42 144.6 7.2 3.5e-42 144.2 7.2 1.1 1 0 0 1 1 1 1 Formiminotransferase-cyclodeaminase DUF3995 PF13160.6 gi|344210127|ref|YP_004786303.1| - 0.12 12.7 3.5 0.3 11.5 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) MccV PF17508.2 gi|344210127|ref|YP_004786303.1| - 0.23 12.0 5.1 0.14 12.7 0.7 2.2 2 0 0 2 2 2 0 Microcin V bacteriocin FTHFS PF01268.19 gi|344210128|ref|YP_004786304.1| - 7.1e-240 796.9 0.0 8e-240 796.7 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase Pterin_bind PF00809.22 gi|344210129|ref|YP_004786305.1| - 2.5e-81 272.9 0.8 4.3e-81 272.2 0.8 1.4 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|344210129|ref|YP_004786305.1| - 5.6e-12 46.0 0.0 1.3e-11 44.9 0.0 1.7 1 1 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|344210129|ref|YP_004786305.1| - 1.7e-06 28.2 0.0 5.5e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain TPP_enzyme_N PF02776.18 gi|344210129|ref|YP_004786305.1| - 0.021 14.5 0.3 0.073 12.7 0.3 1.9 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FixQ PF05545.11 gi|344210130|ref|YP_004786306.1| - 0.069 13.1 0.3 0.1 12.6 0.3 1.2 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ Lar_restr_allev PF14354.6 gi|344210131|ref|YP_004786307.1| - 0.0028 18.0 9.0 0.0034 17.7 0.7 2.9 2 1 1 3 3 3 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|344210131|ref|YP_004786307.1| - 0.0034 17.3 5.0 0.34 10.9 0.2 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zf-piccolo PF05715.13 gi|344210131|ref|YP_004786307.1| - 0.011 15.9 0.4 0.011 15.9 0.4 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger Zn_Tnp_IS91 PF14319.6 gi|344210131|ref|YP_004786307.1| - 0.018 15.1 0.8 0.018 15.1 0.8 1.9 2 0 0 2 2 2 0 Transposase zinc-binding domain HypA PF01155.19 gi|344210131|ref|YP_004786307.1| - 0.039 14.0 7.6 0.33 11.0 3.1 2.7 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|344210131|ref|YP_004786307.1| - 0.05 13.6 7.6 0.59 10.2 4.6 2.2 1 1 1 2 2 2 0 zinc-ribbons zf_Rg PF17915.1 gi|344210131|ref|YP_004786307.1| - 0.35 10.3 2.3 0.29 10.5 0.2 1.9 1 1 1 2 2 2 0 Reverse gyrase zinc finger IBR PF01485.21 gi|344210131|ref|YP_004786307.1| - 0.43 10.9 10.2 8.2 6.7 4.5 2.3 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zinc_ribbon_15 PF17032.5 gi|344210131|ref|YP_004786307.1| - 0.45 11.3 4.8 28 5.6 4.8 2.4 1 1 1 2 2 2 0 zinc-ribbon family DZR PF12773.7 gi|344210131|ref|YP_004786307.1| - 0.48 10.5 9.1 4.1 7.5 1.8 2.4 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|344210131|ref|YP_004786307.1| - 0.53 9.8 6.3 2.1 7.9 0.7 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|344210131|ref|YP_004786307.1| - 0.64 10.0 8.2 36 4.4 0.3 4.0 4 0 0 4 4 4 0 zinc-ribbon domain TRAF6_Z2 PF18048.1 gi|344210131|ref|YP_004786307.1| - 0.77 9.9 4.3 2.8 8.1 0.1 2.8 3 0 0 3 3 3 0 TNF receptor-associated factor 6 zinc finger 2 YacG PF03884.14 gi|344210131|ref|YP_004786307.1| - 1.2 8.9 8.8 8.9 6.1 0.6 3.5 3 1 0 3 3 3 0 DNA gyrase inhibitor YacG zf_UBZ PF18439.1 gi|344210131|ref|YP_004786307.1| - 4.1 7.1 10.4 7.2 6.3 0.1 3.9 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Anti-TRAP PF15777.5 gi|344210131|ref|YP_004786307.1| - 6.2 6.9 10.7 1.1 9.2 3.0 2.9 2 2 1 3 3 3 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C3HC4_3 PF13920.6 gi|344210131|ref|YP_004786307.1| - 6.5 6.7 9.3 9.4 6.2 0.0 3.2 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zf-C4_Topoisom PF01396.19 gi|344210131|ref|YP_004786307.1| - 9 6.2 8.5 9.4 6.1 0.0 3.3 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger MFS_1 PF07690.16 gi|344210132|ref|YP_004786308.1| - 0.01 14.8 13.1 0.01 14.8 13.1 2.0 1 1 1 2 2 2 0 Major Facilitator Superfamily BCCT PF02028.17 gi|344210133|ref|YP_004786309.1| - 6.1e-179 595.5 45.5 7e-179 595.3 45.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Trp_oprn_chp PF09534.10 gi|344210133|ref|YP_004786309.1| - 0.53 10.1 0.0 0.53 10.1 0.0 3.2 3 0 0 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) TMEM72 PF16054.5 gi|344210134|ref|YP_004786310.1| - 0.099 12.3 0.3 0.1 12.3 0.3 1.0 1 0 0 1 1 1 0 Transmembrane protein family 72 Usp PF00582.26 gi|344210135|ref|YP_004786311.1| - 4.5e-30 105.0 0.0 5.5e-30 104.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|344210135|ref|YP_004786311.1| - 0.0082 15.6 0.2 0.01 15.3 0.2 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PALP PF00291.25 gi|344210136|ref|YP_004786312.1| - 4.7e-78 262.6 5.7 6.4e-78 262.1 5.7 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|344210136|ref|YP_004786312.1| - 1.4e-07 31.1 0.4 1.4e-07 31.1 0.4 2.0 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|344210136|ref|YP_004786312.1| - 9.2e-06 26.2 1.0 2e-05 25.1 0.1 2.1 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|344210136|ref|YP_004786312.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 ACT domain GCV_T PF01571.21 gi|344210137|ref|YP_004786313.1| - 1.9e-76 256.8 0.0 2.6e-76 256.4 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|344210137|ref|YP_004786313.1| - 2.1e-38 132.8 1.7 5.4e-38 131.5 1.5 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|344210137|ref|YP_004786313.1| - 7.4e-17 61.1 0.2 2.2e-16 59.6 0.1 1.9 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|344210137|ref|YP_004786313.1| - 3.9e-13 49.5 0.2 1e-12 48.1 0.2 1.8 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain NAD_binding_8 PF13450.6 gi|344210137|ref|YP_004786313.1| - 1.7e-05 25.0 0.1 6.8e-05 23.0 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain SoxG PF04268.12 gi|344210137|ref|YP_004786313.1| - 2.7e-05 24.3 0.0 0.00048 20.3 0.0 2.3 1 1 0 2 2 2 1 Sarcosine oxidase, gamma subunit family FAD_binding_2 PF00890.24 gi|344210137|ref|YP_004786313.1| - 5.1e-05 22.5 0.3 9.8e-05 21.6 0.3 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344210137|ref|YP_004786313.1| - 0.00019 20.7 0.1 0.0022 17.3 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|344210137|ref|YP_004786313.1| - 0.00085 19.8 0.4 0.0063 17.0 0.4 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210137|ref|YP_004786313.1| - 0.001 18.4 0.1 0.02 14.2 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344210137|ref|YP_004786313.1| - 0.0014 18.3 0.0 0.0026 17.4 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|344210137|ref|YP_004786313.1| - 0.0037 16.7 0.0 0.0066 15.8 0.0 1.3 1 0 0 1 1 1 1 ThiF family GMC_oxred_N PF00732.19 gi|344210137|ref|YP_004786313.1| - 0.0082 15.5 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase Lycopene_cycl PF05834.12 gi|344210137|ref|YP_004786313.1| - 0.038 13.0 0.5 0.068 12.2 0.5 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein HI0933_like PF03486.14 gi|344210137|ref|YP_004786313.1| - 0.056 12.1 0.1 2.1 6.9 0.2 2.2 2 0 0 2 2 2 0 HI0933-like protein Shikimate_DH PF01488.20 gi|344210137|ref|YP_004786313.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|344210137|ref|YP_004786313.1| - 0.082 13.2 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Thi4 PF01946.17 gi|344210137|ref|YP_004786313.1| - 0.087 12.1 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.6 gi|344210137|ref|YP_004786313.1| - 0.11 12.4 0.7 9.1 6.3 0.3 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding GCV_T PF01571.21 gi|344210138|ref|YP_004786314.1| - 2.5e-81 272.9 0.1 3.6e-81 272.3 0.1 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|344210138|ref|YP_004786314.1| - 2.1e-50 172.3 0.8 4.9e-50 171.1 0.8 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T_C PF08669.11 gi|344210138|ref|YP_004786314.1| - 8e-15 54.5 0.0 2.5e-14 53.0 0.0 1.9 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAO_M PF16350.5 gi|344210138|ref|YP_004786314.1| - 2.7e-13 50.0 0.4 7.5e-13 48.6 0.4 1.8 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain SoxG PF04268.12 gi|344210138|ref|YP_004786314.1| - 2.5e-06 27.7 0.0 4.8e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.6 gi|344210138|ref|YP_004786314.1| - 3.5e-05 24.0 0.1 0.00016 21.8 0.0 2.3 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|344210138|ref|YP_004786314.1| - 3.6e-05 24.2 0.3 0.0047 17.4 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|344210138|ref|YP_004786314.1| - 4.1e-05 22.9 0.3 4.1e-05 22.9 0.3 2.1 3 0 0 3 3 3 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|344210138|ref|YP_004786314.1| - 0.00013 21.3 0.7 0.0031 16.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|344210138|ref|YP_004786314.1| - 0.0054 17.0 0.1 0.055 13.7 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain ThiF PF00899.21 gi|344210138|ref|YP_004786314.1| - 0.007 15.7 0.1 0.016 14.6 0.1 1.5 1 0 0 1 1 1 1 ThiF family Pyr_redox_3 PF13738.6 gi|344210138|ref|YP_004786314.1| - 0.016 14.5 0.6 0.3 10.3 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|344210138|ref|YP_004786314.1| - 0.023 14.4 0.1 0.044 13.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|344210138|ref|YP_004786314.1| - 0.037 13.1 2.5 0.19 10.8 0.2 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 gi|344210138|ref|YP_004786314.1| - 0.046 13.1 0.0 0.084 12.2 0.0 1.4 1 0 0 1 1 1 0 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|344210138|ref|YP_004786314.1| - 0.049 13.6 0.4 8.1 6.4 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|344210138|ref|YP_004786314.1| - 0.066 11.9 0.2 0.74 8.4 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein AstE_AspA PF04952.14 gi|344210139|ref|YP_004786315.1| - 1.6e-41 142.3 0.1 1.8e-41 142.1 0.1 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family ATP-synt_ab_Xtn PF16886.5 gi|344210139|ref|YP_004786315.1| - 0.0016 18.3 0.0 0.0033 17.3 0.0 1.6 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension MTHFR PF02219.17 gi|344210141|ref|YP_004786317.1| - 1.6e-13 50.7 0.0 3.6e-13 49.5 0.0 1.6 1 1 0 1 1 1 1 Methylenetetrahydrofolate reductase DUF1611_N PF17396.2 gi|344210141|ref|YP_004786317.1| - 0.081 13.2 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_N) Rossmann-like domain GcpE PF04551.14 gi|344210141|ref|YP_004786317.1| - 0.14 11.2 0.0 0.39 9.8 0.0 1.6 2 0 0 2 2 2 0 GcpE protein GCV_T PF01571.21 gi|344210142|ref|YP_004786318.1| - 4.3e-47 160.6 0.0 5.7e-47 160.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|344210142|ref|YP_004786318.1| - 0.00014 21.7 0.0 0.00034 20.5 0.0 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DHFR_1 PF00186.19 gi|344210143|ref|YP_004786319.1| - 6e-50 169.1 0.0 7.1e-50 168.8 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase TctA PF01970.16 gi|344210144|ref|YP_004786320.1| - 0.0032 16.3 1.9 0.0033 16.2 1.9 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Phage_holin_3_6 PF07332.11 gi|344210144|ref|YP_004786320.1| - 0.18 11.8 4.0 0.22 11.5 4.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III HTH_10 PF04967.12 gi|344210145|ref|YP_004786321.1| - 1e-16 60.4 0.0 1.7e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|344210145|ref|YP_004786321.1| - 0.00032 20.6 0.0 0.00044 20.1 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|344210145|ref|YP_004786321.1| - 0.0053 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|344210145|ref|YP_004786321.1| - 0.017 14.6 0.0 0.049 13.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|344210145|ref|YP_004786321.1| - 0.077 12.7 0.0 0.69 9.6 0.0 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 MTH865 PF07747.11 gi|344210147|ref|YP_004786323.1| - 0.001 18.8 0.1 0.0012 18.6 0.1 1.1 1 0 0 1 1 1 1 MTH865-like family PA14 PF07691.12 gi|344210147|ref|YP_004786323.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.0 1 0 0 1 1 1 0 PA14 domain CN_hydrolase PF00795.22 gi|344210148|ref|YP_004786324.1| - 2.3e-38 132.0 0.0 2.8e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase MFS_1 PF07690.16 gi|344210149|ref|YP_004786325.1| - 2.8e-45 154.8 64.5 1.9e-36 125.8 41.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|344210149|ref|YP_004786325.1| - 0.00011 21.3 18.3 0.013 14.4 5.0 2.3 1 1 1 2 2 2 2 MFS_1 like family Sugar_tr PF00083.24 gi|344210149|ref|YP_004786325.1| - 0.84 8.4 28.6 0.023 13.6 9.0 2.5 2 1 0 2 2 2 0 Sugar (and other) transporter Aldedh PF00171.22 gi|344210150|ref|YP_004786326.1| - 5.5e-12 44.9 0.0 5.9e-12 44.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family PE PF00934.20 gi|344210150|ref|YP_004786326.1| - 0.11 12.9 0.0 0.13 12.6 0.0 1.1 1 0 0 1 1 1 0 PE family IclR PF01614.18 gi|344210151|ref|YP_004786327.1| - 2.4e-32 111.5 0.0 1.6e-31 108.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|344210151|ref|YP_004786327.1| - 8.7e-10 38.3 0.1 5.8e-09 35.6 0.0 2.4 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344210151|ref|YP_004786327.1| - 3.6e-05 23.6 0.4 0.00011 22.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|344210151|ref|YP_004786327.1| - 7.4e-05 22.5 0.0 0.00026 20.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|344210151|ref|YP_004786327.1| - 0.00015 21.6 0.0 0.00043 20.1 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|344210151|ref|YP_004786327.1| - 0.00019 21.3 0.0 0.00036 20.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344210151|ref|YP_004786327.1| - 0.0004 20.4 0.0 0.0012 18.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|344210151|ref|YP_004786327.1| - 0.00063 19.2 0.0 0.0016 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|344210151|ref|YP_004786327.1| - 0.0094 16.3 0.0 0.021 15.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|344210151|ref|YP_004786327.1| - 0.037 14.2 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.10 gi|344210151|ref|YP_004786327.1| - 0.064 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF742 PF05331.11 gi|344210151|ref|YP_004786327.1| - 0.085 12.7 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Diacid_rec PF05651.13 gi|344210151|ref|YP_004786327.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative sugar diacid recognition ABC_tran PF00005.27 gi|344210152|ref|YP_004786328.1| - 2.9e-32 112.0 0.0 5.1e-32 111.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|344210152|ref|YP_004786328.1| - 2.5e-10 40.4 0.1 9e-10 38.6 0.1 2.0 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|344210152|ref|YP_004786328.1| - 3e-09 37.6 0.2 2.3e-08 34.7 0.0 2.7 3 0 0 3 3 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|344210152|ref|YP_004786328.1| - 1e-06 28.8 0.0 0.051 13.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|344210152|ref|YP_004786328.1| - 1.8e-05 25.0 0.1 0.00031 21.0 0.0 2.6 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|344210152|ref|YP_004786328.1| - 2.7e-05 23.7 0.7 0.00012 21.6 0.7 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|344210152|ref|YP_004786328.1| - 0.0013 19.1 0.3 0.0029 18.0 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|344210152|ref|YP_004786328.1| - 0.0015 18.8 0.2 0.0038 17.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|344210152|ref|YP_004786328.1| - 0.0018 18.2 0.1 0.0044 17.0 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|344210152|ref|YP_004786328.1| - 0.0029 17.6 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|344210152|ref|YP_004786328.1| - 0.011 16.0 0.4 0.12 12.6 0.0 2.5 3 0 0 3 3 2 0 AAA domain AAA_25 PF13481.6 gi|344210152|ref|YP_004786328.1| - 0.017 14.7 0.0 0.73 9.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain CysA_C_terminal PF17850.1 gi|344210152|ref|YP_004786328.1| - 0.025 15.1 3.2 0.21 12.2 0.1 3.5 4 0 0 4 4 4 0 CysA C-terminal regulatory domain AAA PF00004.29 gi|344210152|ref|YP_004786328.1| - 0.032 14.7 0.8 0.18 12.2 0.8 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|344210152|ref|YP_004786328.1| - 0.032 13.9 0.1 0.067 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|344210152|ref|YP_004786328.1| - 0.067 13.7 0.0 0.19 12.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|344210152|ref|YP_004786328.1| - 0.079 12.2 0.1 0.35 10.1 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin PhoH PF02562.16 gi|344210152|ref|YP_004786328.1| - 0.083 12.3 0.5 0.79 9.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.6 gi|344210152|ref|YP_004786328.1| - 0.089 12.9 0.7 0.18 11.9 0.7 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|344210152|ref|YP_004786328.1| - 0.093 12.6 0.6 0.51 10.2 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_29 PF13555.6 gi|344210152|ref|YP_004786328.1| - 0.094 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|344210152|ref|YP_004786328.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|344210152|ref|YP_004786328.1| - 0.12 12.9 0.4 0.37 11.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|344210152|ref|YP_004786328.1| - 0.15 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344210152|ref|YP_004786328.1| - 0.19 11.4 0.0 0.8 9.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 gi|344210152|ref|YP_004786328.1| - 0.2 12.1 0.0 0.69 10.3 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Creatininase PF02633.14 gi|344210153|ref|YP_004786329.1| - 8.9e-62 208.7 0.4 1e-61 208.5 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase SBP_bac_1 PF01547.25 gi|344210154|ref|YP_004786330.1| - 4.2e-41 141.9 0.1 6.1e-41 141.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|344210154|ref|YP_004786330.1| - 6.5e-37 127.9 0.0 9.4e-37 127.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|344210154|ref|YP_004786330.1| - 1.6e-05 24.4 0.1 0.14 11.6 0.2 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|344210154|ref|YP_004786330.1| - 0.0026 17.6 0.0 0.0061 16.3 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|344210154|ref|YP_004786330.1| - 0.015 15.1 0.1 0.033 14.1 0.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|344210155|ref|YP_004786331.1| - 1.1e-20 74.1 17.1 1.1e-20 74.1 15.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|344210156|ref|YP_004786332.1| - 9e-16 58.1 18.5 9e-16 58.1 18.5 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5036 PF16439.5 gi|344210157|ref|YP_004786333.1| - 0.06 13.1 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5036) MR_MLE_C PF13378.6 gi|344210158|ref|YP_004786334.1| - 7.5e-49 166.3 0.1 1e-48 165.8 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|344210158|ref|YP_004786334.1| - 1.7e-16 60.5 0.0 4.8e-16 59.0 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DHNA PF04038.12 gi|344210158|ref|YP_004786334.1| - 0.092 13.3 0.1 1.2 9.6 0.1 2.3 2 0 0 2 2 2 0 Dihydroneopterin aldolase adh_short_C2 PF13561.6 gi|344210159|ref|YP_004786335.1| - 3.3e-62 210.1 0.2 3.9e-62 209.9 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|344210159|ref|YP_004786335.1| - 3.1e-49 167.1 0.3 3.8e-49 166.8 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|344210159|ref|YP_004786335.1| - 6.4e-12 45.8 0.2 9.7e-12 45.2 0.2 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|344210159|ref|YP_004786335.1| - 3.6e-05 23.3 0.2 0.0002 20.9 0.2 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|344210159|ref|YP_004786335.1| - 0.0016 18.4 0.6 0.0025 17.7 0.4 1.4 1 1 0 1 1 1 1 NAD(P)H-binding EccE PF11203.8 gi|344210159|ref|YP_004786335.1| - 0.028 14.8 1.9 0.6 10.5 0.2 2.2 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE RmlD_sub_bind PF04321.17 gi|344210159|ref|YP_004786335.1| - 0.049 12.7 0.0 0.081 12.0 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|344210159|ref|YP_004786335.1| - 0.086 12.7 0.3 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Polysacc_synt_2 PF02719.15 gi|344210159|ref|YP_004786335.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Ribonuc_L-PSP PF01042.21 gi|344210160|ref|YP_004786336.1| - 6.3e-41 139.2 0.0 6.9e-41 139.0 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP HAD PF12710.7 gi|344210161|ref|YP_004786337.1| - 1.4e-10 41.9 0.2 2.1e-10 41.3 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|344210161|ref|YP_004786337.1| - 3.7e-06 27.4 0.3 0.0004 20.7 0.3 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344210161|ref|YP_004786337.1| - 4e-05 23.8 0.5 0.0036 17.4 0.5 2.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|344210161|ref|YP_004786337.1| - 0.081 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) EamA PF00892.20 gi|344210162|ref|YP_004786338.1| - 6.8e-33 113.7 34.7 1.8e-16 60.6 19.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family RseC_MucC PF04246.12 gi|344210162|ref|YP_004786338.1| - 0.012 15.6 1.0 0.012 15.6 1.0 4.0 1 1 3 5 5 5 0 Positive regulator of sigma(E), RseC/MucC SDF PF00375.18 gi|344210163|ref|YP_004786339.1| - 6.4e-113 377.7 37.4 7.2e-113 377.5 37.4 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Hexapep PF00132.24 gi|344210164|ref|YP_004786340.1| - 2.3e-11 42.9 3.5 8.4e-07 28.5 2.3 2.6 2 1 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.14 gi|344210164|ref|YP_004786340.1| - 8e-05 23.0 0.0 0.00015 22.1 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.6 gi|344210164|ref|YP_004786340.1| - 0.0031 17.2 1.2 0.0031 17.2 1.2 2.4 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase DUF1996 PF09362.10 gi|344210164|ref|YP_004786340.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1996) zf-RING_7 PF02591.15 gi|344210165|ref|YP_004786341.1| - 0.044 14.0 1.8 0.21 11.8 0.2 2.2 2 1 0 2 2 2 0 C4-type zinc ribbon domain DUF3268 PF11672.8 gi|344210165|ref|YP_004786341.1| - 0.18 12.1 1.0 0.23 11.8 0.1 1.5 1 1 1 2 2 2 0 zinc-finger-containing domain THF_DHG_CYH_C PF02882.19 gi|344210166|ref|YP_004786342.1| - 8.4e-66 220.2 1.5 1.2e-65 219.8 1.5 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|344210166|ref|YP_004786342.1| - 6e-34 116.8 0.0 9.1e-34 116.2 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Chorismate_bind PF00425.18 gi|344210167|ref|YP_004786343.1| - 5.8e-100 334.1 0.0 1.6e-99 332.7 0.0 1.7 2 1 1 3 3 3 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|344210167|ref|YP_004786343.1| - 1.8e-08 34.7 0.0 4.9e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region YqgC PF17430.2 gi|344210167|ref|YP_004786343.1| - 0.047 13.8 0.1 0.14 12.3 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized YqgC-like DUF3484 PF11983.8 gi|344210167|ref|YP_004786343.1| - 0.12 13.5 0.1 0.34 12.0 0.1 1.8 1 0 0 1 1 1 0 Membrane-attachment and polymerisation-promoting switch GATase PF00117.28 gi|344210168|ref|YP_004786344.1| - 5.8e-46 156.7 0.0 6.5e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|344210168|ref|YP_004786344.1| - 1.4e-07 31.5 0.8 6e-07 29.4 0.8 1.8 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.18 gi|344210168|ref|YP_004786344.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein BCCT PF02028.17 gi|344210169|ref|YP_004786345.1| - 9.4e-132 439.9 43.7 1.1e-131 439.6 43.7 1.1 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Pox_A9 PF04835.12 gi|344210169|ref|YP_004786345.1| - 0.015 15.4 1.6 0.088 13.0 0.0 2.6 2 0 0 2 2 2 0 A9 protein conserved region TrkA_N PF02254.18 gi|344210170|ref|YP_004786346.1| - 1.3e-26 93.2 2.3 2.1e-26 92.5 2.3 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|344210170|ref|YP_004786346.1| - 4.6e-14 52.1 7.5 4.6e-14 52.1 7.5 3.1 4 1 0 4 4 4 1 Ion channel Ion_trans PF00520.31 gi|344210170|ref|YP_004786346.1| - 0.0016 17.7 0.2 0.003 16.8 0.2 1.5 1 1 0 1 1 1 1 Ion transport protein tRNA-synt_2_TM PF16995.5 gi|344210170|ref|YP_004786346.1| - 0.011 15.4 8.3 0.016 14.9 7.9 1.6 1 1 0 1 1 1 0 Transmembrane region of lysyl-tRNA synthetase NAD_binding_7 PF13241.6 gi|344210170|ref|YP_004786346.1| - 0.89 10.0 3.6 0.21 12.0 0.3 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding EamA PF00892.20 gi|344210171|ref|YP_004786347.1| - 4.3e-12 46.4 19.3 4.8e-12 46.2 19.3 1.0 1 0 0 1 1 1 1 EamA-like transporter family DUF1129 PF06570.11 gi|344210171|ref|YP_004786347.1| - 3.9 6.9 8.2 4.9 6.6 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) Ribonuc_L-PSP PF01042.21 gi|344210172|ref|YP_004786348.1| - 2.7e-37 127.5 0.0 3e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|344210172|ref|YP_004786348.1| - 0.013 15.6 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease DUF695 PF05117.12 gi|344210173|ref|YP_004786349.1| - 0.075 13.2 0.0 0.1 12.8 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF695) NADH_4Fe-4S PF10589.9 gi|344210174|ref|YP_004786350.1| - 4.7e-18 65.0 0.0 8.8e-18 64.2 0.0 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Complex1_51K PF01512.17 gi|344210174|ref|YP_004786350.1| - 3.9e-16 59.3 0.0 6.1e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit SLBB PF10531.9 gi|344210174|ref|YP_004786350.1| - 0.012 15.5 0.0 0.39 10.6 0.0 2.7 2 0 0 2 2 2 0 SLBB domain HMA PF00403.26 gi|344210174|ref|YP_004786350.1| - 0.11 13.0 1.2 1.7 9.1 0.1 3.0 3 0 0 3 3 3 0 Heavy-metal-associated domain Molybdopterin PF00384.22 gi|344210175|ref|YP_004786351.1| - 6.2e-83 279.1 0.0 7.7e-83 278.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|344210175|ref|YP_004786351.1| - 8.5e-34 115.9 0.0 1.5e-33 115.1 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|344210175|ref|YP_004786351.1| - 1.1e-27 95.9 0.2 2.7e-27 94.6 0.2 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|344210175|ref|YP_004786351.1| - 3.4e-12 45.7 0.8 3.4e-12 45.7 0.8 2.5 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 gi|344210175|ref|YP_004786351.1| - 2.9e-09 36.8 0.1 1.1e-08 34.9 0.1 2.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_21 PF14697.6 gi|344210175|ref|YP_004786351.1| - 4.9e-09 36.2 8.9 4.9e-09 36.2 8.9 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|344210175|ref|YP_004786351.1| - 5.4e-09 36.5 15.2 3.6e-08 33.9 8.7 3.6 4 1 0 4 4 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344210175|ref|YP_004786351.1| - 3.5e-07 29.8 20.6 0.00017 21.2 1.0 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344210175|ref|YP_004786351.1| - 5.8e-06 26.2 12.2 5.9e-05 23.0 3.0 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|344210175|ref|YP_004786351.1| - 5.9e-06 27.1 5.6 0.0017 19.3 0.1 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|344210175|ref|YP_004786351.1| - 2.9e-05 24.4 8.0 2.9e-05 24.4 8.0 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344210175|ref|YP_004786351.1| - 4.4e-05 23.6 10.0 4.4e-05 23.6 10.0 3.9 2 1 3 5 5 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|344210175|ref|YP_004786351.1| - 0.00016 21.7 13.2 0.00016 21.7 13.2 3.5 4 1 1 5 5 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|344210175|ref|YP_004786351.1| - 0.002 18.3 13.1 0.038 14.2 1.5 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|344210175|ref|YP_004786351.1| - 0.01 15.9 2.8 0.01 15.9 2.8 4.5 5 0 0 5 5 4 0 4Fe-4S binding domain CDC48_N PF02359.18 gi|344210175|ref|YP_004786351.1| - 0.055 13.7 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain NIPSNAP PF07978.13 gi|344210175|ref|YP_004786351.1| - 0.17 12.1 0.0 0.58 10.4 0.0 1.9 1 0 0 1 1 1 0 NIPSNAP Fer4_15 PF13459.6 gi|344210175|ref|YP_004786351.1| - 0.17 12.6 18.3 0.11 13.3 3.5 4.6 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|344210175|ref|YP_004786351.1| - 0.42 11.5 16.1 0.36 11.7 1.3 3.8 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|344210175|ref|YP_004786351.1| - 0.53 10.9 15.6 2.3 8.8 4.1 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Creatininase PF02633.14 gi|344210176|ref|YP_004786352.1| - 1.5e-68 230.9 2.0 1.7e-68 230.7 2.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase CPBP PF02517.16 gi|344210177|ref|YP_004786353.1| - 5.7e-14 52.3 8.5 5.7e-14 52.3 8.5 2.8 2 1 2 4 4 4 1 CPBP intramembrane metalloprotease Peptidase_S8 PF00082.22 gi|344210178|ref|YP_004786354.1| - 3.8e-17 62.5 2.7 1.5e-15 57.3 0.0 2.7 2 1 0 2 2 2 2 Subtilase family HTH_20 PF12840.7 gi|344210179|ref|YP_004786355.1| - 3.8e-14 52.5 0.0 6.4e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|344210179|ref|YP_004786355.1| - 6.6e-07 29.1 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|344210179|ref|YP_004786355.1| - 4.2e-06 26.2 0.0 7e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|344210179|ref|YP_004786355.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain GerE PF00196.19 gi|344210179|ref|YP_004786355.1| - 0.17 11.5 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|344210179|ref|YP_004786355.1| - 0.18 11.7 0.0 0.33 10.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Ribosomal_L21p PF00829.21 gi|344210180|ref|YP_004786356.1| - 0.0039 17.4 0.6 2.2 8.6 0.0 3.3 3 0 0 3 3 3 1 Ribosomal prokaryotic L21 protein Excalibur PF05901.11 gi|344210180|ref|YP_004786356.1| - 0.0064 17.1 0.1 1.1 9.9 0.0 3.6 3 0 0 3 3 3 1 Excalibur calcium-binding domain YpM PF09144.10 gi|344210180|ref|YP_004786356.1| - 0.0081 16.3 0.2 0.19 11.9 0.1 2.4 2 0 0 2 2 2 1 Yersinia pseudo-tuberculosis mitogen RNase_II_C_S1 PF18614.1 gi|344210180|ref|YP_004786356.1| - 0.015 15.2 5.3 1.9 8.5 0.0 4.3 4 0 0 4 4 4 0 RNase II-type exonuclease C-terminal S1 domain NusG_II PF07009.11 gi|344210180|ref|YP_004786356.1| - 0.14 12.4 0.1 13 6.1 0.0 3.0 2 1 1 3 3 3 0 NusG domain II AglB_L1 PF18079.1 gi|344210180|ref|YP_004786356.1| - 1.5 9.2 6.7 1.3 9.3 0.2 3.7 4 1 0 4 4 4 0 Archaeal glycosylation protein B long peripheral domain PRC PF05239.16 gi|344210181|ref|YP_004786357.1| - 1.9e-09 37.5 0.0 2.3e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain CopD PF05425.13 gi|344210182|ref|YP_004786358.1| - 0.00014 22.2 16.5 0.0082 16.5 9.7 2.3 1 1 1 2 2 2 2 Copper resistance protein D DUF4149 PF13664.6 gi|344210182|ref|YP_004786358.1| - 0.13 12.5 9.8 0.16 12.3 6.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) Fe_dep_repress PF01325.19 gi|344210183|ref|YP_004786359.1| - 4.7e-15 55.5 0.1 6.8e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|344210183|ref|YP_004786359.1| - 1.3e-06 28.2 0.0 2.3e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210183|ref|YP_004786359.1| - 2.8e-05 24.0 0.0 4.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344210183|ref|YP_004786359.1| - 0.0002 21.2 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|344210183|ref|YP_004786359.1| - 0.0014 19.1 0.0 0.0022 18.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|344210183|ref|YP_004786359.1| - 0.0031 17.0 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rio2_N PF09202.11 gi|344210183|ref|YP_004786359.1| - 0.012 15.8 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal Rrf2 PF02082.20 gi|344210183|ref|YP_004786359.1| - 0.019 15.3 0.0 0.031 14.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.13 gi|344210183|ref|YP_004786359.1| - 0.067 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_12 PF08461.10 gi|344210183|ref|YP_004786359.1| - 0.073 13.0 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain GntR PF00392.21 gi|344210183|ref|YP_004786359.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Topoisom_bac PF01131.20 gi|344210183|ref|YP_004786359.1| - 0.14 11.2 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase TrmB PF01978.19 gi|344210183|ref|YP_004786359.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.8 gi|344210183|ref|YP_004786359.1| - 0.19 11.8 0.0 0.55 10.3 0.0 1.7 1 1 1 2 2 2 0 HTH DNA binding domain DUF505 PF04458.12 gi|344210183|ref|YP_004786359.1| - 0.2 10.0 0.0 0.24 9.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2249 PF10006.9 gi|344210184|ref|YP_004786360.1| - 9.3e-82 268.9 16.5 9.2e-28 95.9 0.5 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) Hemerythrin PF01814.23 gi|344210185|ref|YP_004786361.1| - 8.6e-20 71.7 20.0 8.6e-20 71.7 20.0 1.7 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 gi|344210185|ref|YP_004786361.1| - 3.5e-18 65.0 1.3 4.3e-18 64.7 0.1 1.8 2 0 0 2 2 2 1 Domain of Unknown function (DUF542) CorA PF01544.18 gi|344210185|ref|YP_004786361.1| - 3e-05 23.5 6.5 3e-05 23.5 6.5 1.5 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein DUF1858 PF08984.11 gi|344210185|ref|YP_004786361.1| - 0.0073 16.5 0.0 0.15 12.3 0.0 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF1858) DLP_helical PF18709.1 gi|344210185|ref|YP_004786361.1| - 0.011 15.0 2.6 0.014 14.6 1.2 1.9 1 1 1 2 2 2 0 Dynamin-like helical domain ERp29 PF07749.12 gi|344210185|ref|YP_004786361.1| - 0.021 15.7 3.1 0.058 14.3 0.4 2.5 1 1 1 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain DinB PF05163.12 gi|344210185|ref|YP_004786361.1| - 0.056 13.4 8.0 0.032 14.2 5.8 1.7 1 1 0 1 1 1 0 DinB family Prefoldin PF02996.17 gi|344210185|ref|YP_004786361.1| - 0.059 13.3 1.1 2.5 8.0 0.0 3.2 2 2 1 3 3 3 0 Prefoldin subunit DUF3038 PF11237.8 gi|344210185|ref|YP_004786361.1| - 0.063 13.3 0.4 0.12 12.4 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) RasGAP_C PF03836.15 gi|344210185|ref|YP_004786361.1| - 0.063 13.4 3.5 0.11 12.6 0.7 2.5 1 1 1 2 2 2 0 RasGAP C-terminus Utp12 PF04003.12 gi|344210185|ref|YP_004786361.1| - 0.092 13.1 0.4 0.32 11.3 0.0 2.1 3 0 0 3 3 3 0 Dip2/Utp12 Family SesA PF17107.5 gi|344210185|ref|YP_004786361.1| - 0.11 12.6 1.0 0.26 11.5 0.5 1.9 1 1 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Exonuc_VII_L PF02601.15 gi|344210185|ref|YP_004786361.1| - 0.12 12.0 2.9 0.21 11.2 2.9 1.5 1 1 0 1 1 1 0 Exonuclease VII, large subunit SHE3 PF17078.5 gi|344210185|ref|YP_004786361.1| - 0.15 11.8 4.7 0.21 11.3 1.2 2.3 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 ImpA_N PF06812.12 gi|344210185|ref|YP_004786361.1| - 0.41 10.8 5.3 22 5.2 0.0 3.6 2 1 0 2 2 2 0 ImpA, N-terminal, type VI secretion system FapA PF03961.13 gi|344210185|ref|YP_004786361.1| - 0.58 8.7 2.5 6.7 5.2 0.9 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF1664 PF07889.12 gi|344210185|ref|YP_004786361.1| - 1.2 9.2 2.7 18 5.4 1.7 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|344210185|ref|YP_004786361.1| - 7.3 5.4 14.1 12 4.7 9.0 2.4 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF4404 PF14357.6 gi|344210185|ref|YP_004786361.1| - 7.5 7.3 15.6 1.3 9.7 5.1 2.8 2 1 0 3 3 3 0 Domain of unknown function (DUF4404) MMPL PF03176.15 gi|344210186|ref|YP_004786362.1| - 1.5 7.7 5.3 1.7 7.5 5.3 1.1 1 0 0 1 1 1 0 MMPL family TetR_C_6 PF13977.6 gi|344210187|ref|YP_004786363.1| - 5.9e-22 78.1 0.8 5.9e-22 78.1 0.8 1.7 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344210187|ref|YP_004786363.1| - 4.4e-10 39.2 0.7 8e-10 38.4 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|344210187|ref|YP_004786363.1| - 1.8e-05 25.0 0.2 5e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|344210187|ref|YP_004786363.1| - 0.013 16.2 0.0 0.027 15.1 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344210187|ref|YP_004786363.1| - 0.014 15.4 0.4 0.052 13.6 0.1 2.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain HAD_2 PF13419.6 gi|344210187|ref|YP_004786363.1| - 0.016 15.3 0.3 0.061 13.4 0.3 1.8 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase Sigma70_r4 PF04545.16 gi|344210187|ref|YP_004786363.1| - 0.037 13.5 0.0 0.067 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 TetR_C_17 PF17922.1 gi|344210187|ref|YP_004786363.1| - 0.064 13.4 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|344210187|ref|YP_004786363.1| - 0.087 12.9 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 gi|344210188|ref|YP_004786364.1| - 1.7e-15 57.2 2.3 1.7e-15 57.2 2.3 1.7 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|344210188|ref|YP_004786364.1| - 7.9e-14 51.2 0.3 1.5e-13 50.3 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_11 PF16859.5 gi|344210188|ref|YP_004786364.1| - 0.00035 20.9 1.9 0.00075 19.8 1.9 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|344210188|ref|YP_004786364.1| - 0.00047 20.2 0.8 0.00082 19.4 0.2 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|344210188|ref|YP_004786364.1| - 0.00065 20.0 0.3 0.0033 17.7 0.1 2.4 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|344210188|ref|YP_004786364.1| - 0.0018 18.3 0.1 0.008 16.3 0.0 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|344210188|ref|YP_004786364.1| - 0.12 12.4 0.1 0.25 11.4 0.1 1.8 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MatE PF01554.18 gi|344210189|ref|YP_004786365.1| - 1.3e-64 216.7 34.1 7.8e-36 123.2 16.0 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|344210189|ref|YP_004786365.1| - 0.00079 19.5 42.7 0.033 14.2 20.9 4.8 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_11 PF08241.12 gi|344210190|ref|YP_004786366.1| - 2.6e-21 76.1 0.0 1.1e-20 74.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210190|ref|YP_004786366.1| - 6.3e-20 71.7 0.0 7.8e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|344210190|ref|YP_004786366.1| - 7.4e-19 68.3 0.0 3.4e-18 66.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210190|ref|YP_004786366.1| - 5.9e-14 52.1 0.0 1.1e-13 51.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|344210190|ref|YP_004786366.1| - 1.1e-13 51.1 0.0 2.2e-13 50.1 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|344210190|ref|YP_004786366.1| - 1.4e-12 48.2 0.0 3.3e-12 47.0 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|344210190|ref|YP_004786366.1| - 0.00098 18.7 0.0 0.0023 17.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|344210190|ref|YP_004786366.1| - 0.011 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Hypothetical methyltransferase PrmA PF06325.13 gi|344210190|ref|YP_004786366.1| - 0.034 13.5 0.0 0.045 13.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|344210190|ref|YP_004786366.1| - 0.068 12.8 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.6 gi|344210190|ref|YP_004786366.1| - 0.1 13.7 0.0 0.21 12.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|344210190|ref|YP_004786366.1| - 0.17 11.6 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|344210190|ref|YP_004786366.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) RrnaAD PF00398.20 gi|344210190|ref|YP_004786366.1| - 0.19 10.8 0.0 0.3 10.1 0.0 1.4 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase DREV PF05219.12 gi|344210190|ref|YP_004786366.1| - 0.19 10.8 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase AIM24 PF01987.17 gi|344210191|ref|YP_004786367.1| - 3.8e-28 98.7 0.3 4.4e-28 98.4 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 PP_kinase_C_1 PF17941.1 gi|344210192|ref|YP_004786368.1| - 2.8e-69 231.9 0.0 5.3e-69 231.0 0.0 1.4 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|344210192|ref|YP_004786368.1| - 1.3e-63 213.6 0.0 1.4e-61 206.9 0.0 2.5 2 1 0 2 2 2 2 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|344210192|ref|YP_004786368.1| - 4.1e-60 202.8 0.7 6.7e-60 202.1 0.7 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|344210192|ref|YP_004786368.1| - 9.7e-36 122.4 0.1 2.7e-35 120.9 0.0 1.9 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|344210192|ref|YP_004786368.1| - 2.1e-12 47.1 0.0 1.2e-06 28.5 0.1 2.7 3 0 0 3 3 3 2 PLD-like domain Metallophos PF00149.28 gi|344210193|ref|YP_004786369.1| - 7.1e-13 49.5 0.1 1e-12 49.0 0.1 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|344210193|ref|YP_004786369.1| - 2.6e-07 31.0 0.0 6.6e-07 29.7 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF5533 PF17685.1 gi|344210195|ref|YP_004786371.1| - 0.29 11.5 2.0 0.31 11.4 2.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5533) DUF3487 PF11990.8 gi|344210195|ref|YP_004786371.1| - 3.1 7.7 5.5 4.5 7.2 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF726 PF05277.12 gi|344210196|ref|YP_004786372.1| - 2.1e-14 53.3 0.0 2.5e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF726) DUF900 PF05990.12 gi|344210196|ref|YP_004786372.1| - 6e-12 45.6 0.0 8.2e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF900) Abhydrolase_6 PF12697.7 gi|344210196|ref|YP_004786372.1| - 0.00044 20.9 8.8 0.00073 20.2 8.8 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Lipase PF00151.19 gi|344210196|ref|YP_004786372.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.1 1 0 0 1 1 1 0 Lipase LCAT PF02450.15 gi|344210196|ref|YP_004786372.1| - 0.036 13.2 0.0 0.045 12.9 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Tudor_4 PF18358.1 gi|344210196|ref|YP_004786372.1| - 0.096 12.3 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain CAF1A PF12253.8 gi|344210196|ref|YP_004786372.1| - 0.14 12.3 0.1 0.26 11.5 0.1 1.4 1 0 0 1 1 1 0 Chromatin assembly factor 1 subunit A Methyltransf_25 PF13649.6 gi|344210197|ref|YP_004786373.1| - 4.2e-12 46.6 0.0 6.2e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210197|ref|YP_004786373.1| - 1.6e-09 38.3 0.0 2.6e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210197|ref|YP_004786373.1| - 3e-09 36.9 0.0 7.1e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|344210197|ref|YP_004786373.1| - 1.8e-07 30.8 0.0 2.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|344210197|ref|YP_004786373.1| - 2.4e-07 30.3 0.0 3.3e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|344210197|ref|YP_004786373.1| - 2.5e-06 27.1 0.0 3.1e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|344210197|ref|YP_004786373.1| - 1.3e-05 25.0 0.0 1.7e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|344210197|ref|YP_004786373.1| - 0.00018 22.2 0.0 0.00034 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|344210197|ref|YP_004786373.1| - 0.00025 20.7 0.0 0.00036 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|344210197|ref|YP_004786373.1| - 0.00073 19.3 0.0 0.001 18.8 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|344210197|ref|YP_004786373.1| - 0.0096 15.7 0.0 0.013 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|344210197|ref|YP_004786373.1| - 0.053 13.3 0.0 0.068 12.9 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein PrmA PF06325.13 gi|344210197|ref|YP_004786373.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) PIN PF01850.21 gi|344210198|ref|YP_004786374.1| - 4.9e-10 40.0 2.9 5.6e-10 39.8 2.9 1.0 1 0 0 1 1 1 1 PIN domain COX1 PF00115.20 gi|344210200|ref|YP_004786376.1| - 7e-145 483.2 61.7 7e-145 483.2 61.7 1.6 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Cupin_2 PF07883.11 gi|344210201|ref|YP_004786377.1| - 2.1e-07 30.5 0.3 3.1e-07 30.0 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|344210201|ref|YP_004786377.1| - 0.0073 16.0 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|344210201|ref|YP_004786377.1| - 0.011 15.4 0.1 0.013 15.2 0.1 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Inhibitor_I78 PF11720.8 gi|344210201|ref|YP_004786377.1| - 0.055 13.5 0.0 0.23 11.5 0.0 1.9 1 1 1 2 2 2 0 Peptidase inhibitor I78 family Cupin_6 PF12852.7 gi|344210201|ref|YP_004786377.1| - 0.066 12.9 0.4 0.077 12.7 0.4 1.3 1 1 0 1 1 1 0 Cupin AraC_binding PF02311.19 gi|344210201|ref|YP_004786377.1| - 0.15 11.9 0.0 0.19 11.6 0.0 1.1 1 0 0 1 1 1 0 AraC-like ligand binding domain Bac_luciferase PF00296.20 gi|344210202|ref|YP_004786378.1| - 2.3e-47 162.0 4.7 3.7e-47 161.3 1.7 1.9 1 1 1 2 2 2 1 Luciferase-like monooxygenase DUF2761 PF10959.8 gi|344210202|ref|YP_004786378.1| - 0.02 14.9 0.3 0.094 12.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2761) NAD_binding_10 PF13460.6 gi|344210203|ref|YP_004786379.1| - 3.5e-36 124.8 2.4 4.1e-36 124.6 2.4 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|344210203|ref|YP_004786379.1| - 2.5e-11 43.6 0.0 3.5e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.19 gi|344210203|ref|YP_004786379.1| - 5.2e-09 35.5 0.0 7.1e-09 35.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|344210203|ref|YP_004786379.1| - 5.7e-07 29.3 0.0 7e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Semialdhyde_dh PF01118.24 gi|344210203|ref|YP_004786379.1| - 6e-05 23.5 0.1 8.9e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|344210203|ref|YP_004786379.1| - 0.0042 17.3 0.2 0.016 15.4 0.1 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|344210203|ref|YP_004786379.1| - 0.021 15.1 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain ADH_zinc_N PF00107.26 gi|344210203|ref|YP_004786379.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase HsbA PF12296.8 gi|344210203|ref|YP_004786379.1| - 0.067 13.6 0.5 5.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Hydrophobic surface binding protein A EamA PF00892.20 gi|344210204|ref|YP_004786380.1| - 7e-38 129.9 39.1 1.1e-19 71.0 16.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|344210204|ref|YP_004786380.1| - 0.03 13.7 8.6 0.22 10.8 4.3 2.2 2 0 0 2 2 2 0 Triose-phosphate Transporter family Aldo_ket_red PF00248.21 gi|344210205|ref|YP_004786381.1| - 8e-56 189.4 0.0 3.3e-53 180.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Peptidase_M19 PF01244.21 gi|344210206|ref|YP_004786382.1| - 0.031 13.4 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) Peptidase_M48 PF01435.18 gi|344210209|ref|YP_004786385.1| - 6.9e-39 133.7 0.0 8.6e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|344210209|ref|YP_004786385.1| - 2.8e-06 26.8 0.1 6.2e-06 25.6 0.0 1.7 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|344210209|ref|YP_004786385.1| - 0.062 13.2 0.0 0.092 12.6 0.0 1.2 1 0 0 1 1 1 0 SprT-like family PrgI PF12666.7 gi|344210209|ref|YP_004786385.1| - 4.9 7.9 8.1 19 6.0 1.7 2.3 2 0 0 2 2 2 0 PrgI family protein ADH_N PF08240.12 gi|344210210|ref|YP_004786386.1| - 2.7e-31 107.7 3.3 5.8e-31 106.6 3.3 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210210|ref|YP_004786386.1| - 4e-21 75.4 0.3 8.1e-21 74.4 0.3 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|344210210|ref|YP_004786386.1| - 5.7e-06 27.4 0.6 1.1e-05 26.6 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|344210210|ref|YP_004786386.1| - 0.082 12.8 0.0 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 N-terminal domain of oxidoreductase DUF2318 PF10080.9 gi|344210210|ref|YP_004786386.1| - 0.11 12.6 1.5 0.42 10.8 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2318) TOBE_2 PF08402.10 gi|344210210|ref|YP_004786386.1| - 0.99 9.6 5.2 0.56 10.4 0.3 3.0 3 1 0 3 3 3 0 TOBE domain Metallophos_2 PF12850.7 gi|344210211|ref|YP_004786387.1| - 3.2e-12 47.0 0.0 1e-05 25.8 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|344210211|ref|YP_004786387.1| - 3.3e-10 40.8 0.5 2.4e-08 34.7 0.3 2.1 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase HTH_20 PF12840.7 gi|344210212|ref|YP_004786388.1| - 3.1e-06 27.2 0.1 4.8e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|344210212|ref|YP_004786388.1| - 0.0029 17.4 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|344210212|ref|YP_004786388.1| - 0.0082 16.0 0.1 0.017 15.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|344210212|ref|YP_004786388.1| - 0.0093 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_17 PF12728.7 gi|344210212|ref|YP_004786388.1| - 0.012 15.8 0.0 0.023 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|344210212|ref|YP_004786388.1| - 0.036 13.9 0.0 0.06 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FAD-oxidase_C PF02913.19 gi|344210215|ref|YP_004786391.1| - 4e-67 226.5 0.1 9.1e-67 225.3 0.1 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|344210215|ref|YP_004786391.1| - 8.6e-39 132.4 0.2 1.9e-38 131.4 0.2 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|344210215|ref|YP_004786391.1| - 7.3e-09 36.1 3.6 1.4e-08 35.1 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|344210215|ref|YP_004786391.1| - 6e-08 33.0 4.8 1.3e-07 32.0 4.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|344210215|ref|YP_004786391.1| - 2.9e-06 27.4 0.0 0.00087 19.5 0.0 2.7 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|344210215|ref|YP_004786391.1| - 0.00016 21.7 3.3 0.0045 17.1 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|344210215|ref|YP_004786391.1| - 0.00095 19.3 2.2 0.025 14.8 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|344210215|ref|YP_004786391.1| - 0.07 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_7 PF12838.7 gi|344210215|ref|YP_004786391.1| - 0.3 11.7 7.4 2.3 8.9 7.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|344210215|ref|YP_004786391.1| - 0.31 11.2 5.5 0.32 11.2 0.5 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|344210215|ref|YP_004786391.1| - 5.5 7.0 12.3 0.2 11.5 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|344210215|ref|YP_004786391.1| - 7.9 6.7 10.4 0.6 10.3 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.14 gi|344210216|ref|YP_004786392.1| - 5.4e-102 342.2 42.9 1.6e-53 182.3 22.7 2.1 2 0 0 2 2 2 2 L-lactate permease ThuA PF06283.11 gi|344210217|ref|YP_004786393.1| - 2.9e-34 119.1 0.3 3.5e-34 118.9 0.3 1.1 1 0 0 1 1 1 1 Trehalose utilisation Pyr_redox_2 PF07992.14 gi|344210219|ref|YP_004786395.1| - 1e-18 67.6 9.8 3.1e-12 46.3 0.5 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210219|ref|YP_004786395.1| - 2.5e-12 46.7 0.3 9.4e-07 28.4 0.0 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|344210219|ref|YP_004786395.1| - 6.5e-10 38.3 0.0 8.6e-05 21.4 0.0 2.3 2 1 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|344210219|ref|YP_004786395.1| - 5.1e-09 35.8 1.0 1.4e-05 24.6 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|344210219|ref|YP_004786395.1| - 2.5e-08 33.9 0.6 0.0012 18.6 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|344210219|ref|YP_004786395.1| - 3.1e-07 29.8 1.1 2.9e-06 26.6 0.1 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|344210219|ref|YP_004786395.1| - 3.3e-05 24.0 0.0 7.7e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|344210219|ref|YP_004786395.1| - 5.7e-05 22.4 0.7 0.00031 20.0 0.1 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|344210219|ref|YP_004786395.1| - 0.00014 21.4 0.0 0.00014 21.4 0.0 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344210219|ref|YP_004786395.1| - 0.00046 19.5 0.0 0.0008 18.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|344210219|ref|YP_004786395.1| - 0.0011 19.0 0.2 0.87 9.6 0.1 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|344210219|ref|YP_004786395.1| - 0.0023 17.3 0.2 0.0034 16.7 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|344210219|ref|YP_004786395.1| - 0.0053 15.8 0.3 0.031 13.3 0.1 1.9 1 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|344210219|ref|YP_004786395.1| - 0.012 16.1 0.1 0.057 14.0 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|344210219|ref|YP_004786395.1| - 0.052 12.7 0.1 5.3 6.1 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.6 gi|344210219|ref|YP_004786395.1| - 0.11 12.9 0.1 0.24 11.9 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding ADH_N PF08240.12 gi|344210220|ref|YP_004786396.1| - 6e-27 93.7 0.9 6e-27 93.7 0.9 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|344210220|ref|YP_004786396.1| - 2.7e-23 82.4 1.3 5e-23 81.5 1.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|344210220|ref|YP_004786396.1| - 2.1e-07 30.6 0.4 3.2e-07 30.0 0.4 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_assoc PF13823.6 gi|344210220|ref|YP_004786396.1| - 3.1e-05 23.8 0.1 3.1e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.6 gi|344210220|ref|YP_004786396.1| - 0.00031 21.8 0.1 0.00066 20.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|344210220|ref|YP_004786396.1| - 0.047 13.0 2.0 0.072 12.4 2.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peripla_BP_2 PF01497.18 gi|344210221|ref|YP_004786397.1| - 1.5e-18 67.3 0.0 1.9e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ABC_tran PF00005.27 gi|344210222|ref|YP_004786398.1| - 7.9e-30 104.2 0.0 1.2e-29 103.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|344210222|ref|YP_004786398.1| - 5.3e-12 46.2 4.0 2.1e-05 24.5 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|344210222|ref|YP_004786398.1| - 2.2e-11 43.6 0.0 5.7e-06 25.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|344210222|ref|YP_004786398.1| - 1.4e-05 24.7 0.0 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|344210222|ref|YP_004786398.1| - 6e-05 23.3 1.8 0.00098 19.4 1.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|344210222|ref|YP_004786398.1| - 0.00017 21.4 0.1 0.00028 20.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|344210222|ref|YP_004786398.1| - 0.00021 21.5 0.1 0.001 19.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|344210222|ref|YP_004786398.1| - 0.00043 19.2 0.7 0.48 9.2 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|344210222|ref|YP_004786398.1| - 0.00049 20.5 0.4 0.00089 19.7 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|344210222|ref|YP_004786398.1| - 0.00072 20.1 0.0 0.0013 19.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|344210222|ref|YP_004786398.1| - 0.0021 17.8 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|344210222|ref|YP_004786398.1| - 0.0032 17.1 0.1 0.0067 16.1 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|344210222|ref|YP_004786398.1| - 0.0043 16.3 0.0 0.0079 15.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin RsgA_GTPase PF03193.16 gi|344210222|ref|YP_004786398.1| - 0.0073 16.2 0.4 0.013 15.4 0.1 1.6 2 0 0 2 2 1 1 RsgA GTPase NACHT PF05729.12 gi|344210222|ref|YP_004786398.1| - 0.0095 15.9 0.1 0.02 14.8 0.0 1.6 2 0 0 2 2 1 1 NACHT domain MMR_HSR1 PF01926.23 gi|344210222|ref|YP_004786398.1| - 0.016 15.2 0.3 0.071 13.2 0.3 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|344210222|ref|YP_004786398.1| - 0.017 15.6 0.2 0.042 14.3 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|344210222|ref|YP_004786398.1| - 0.018 14.4 0.2 0.43 9.9 0.2 2.1 2 0 0 2 2 2 0 Bacterial TniB protein ATP_bind_1 PF03029.17 gi|344210222|ref|YP_004786398.1| - 0.022 14.5 0.1 1.6 8.4 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MukB PF04310.12 gi|344210222|ref|YP_004786398.1| - 0.025 14.4 0.3 0.52 10.1 0.1 2.4 2 0 0 2 2 2 0 MukB N-terminal AAA_25 PF13481.6 gi|344210222|ref|YP_004786398.1| - 0.031 13.9 0.9 0.087 12.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|344210222|ref|YP_004786398.1| - 0.035 14.2 0.0 0.087 12.9 0.0 1.6 2 0 0 2 2 1 0 AAA domain cobW PF02492.19 gi|344210222|ref|YP_004786398.1| - 0.035 13.7 0.5 0.064 12.8 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|344210222|ref|YP_004786398.1| - 0.04 13.6 0.1 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|344210222|ref|YP_004786398.1| - 0.051 13.5 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|344210222|ref|YP_004786398.1| - 0.054 12.9 0.1 0.28 10.6 0.0 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Cytidylate_kin PF02224.18 gi|344210222|ref|YP_004786398.1| - 0.055 13.2 0.1 0.12 12.1 0.1 1.7 1 1 0 1 1 1 0 Cytidylate kinase RNA_helicase PF00910.22 gi|344210222|ref|YP_004786398.1| - 0.055 13.9 0.0 0.097 13.1 0.0 1.5 1 1 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|344210222|ref|YP_004786398.1| - 0.058 13.3 0.8 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|344210222|ref|YP_004786398.1| - 0.065 13.8 0.3 0.23 12.0 0.1 2.0 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|344210222|ref|YP_004786398.1| - 0.069 13.1 0.1 0.2 11.6 0.0 1.7 2 0 0 2 2 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|344210222|ref|YP_004786398.1| - 0.081 13.2 0.1 0.18 12.0 0.1 1.6 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|344210222|ref|YP_004786398.1| - 0.095 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|344210222|ref|YP_004786398.1| - 0.16 11.5 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|344210222|ref|YP_004786398.1| - 0.22 10.7 0.6 0.92 8.7 0.6 1.8 1 1 0 1 1 1 0 KAP family P-loop domain Rad17 PF03215.15 gi|344210222|ref|YP_004786398.1| - 0.24 11.3 0.4 0.61 10.0 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain FecCD PF01032.18 gi|344210223|ref|YP_004786399.1| - 9.1e-89 297.5 35.7 1.1e-88 297.2 35.7 1.1 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|344210223|ref|YP_004786399.1| - 0.00041 19.9 11.9 0.00041 19.9 11.9 2.4 1 1 0 2 2 2 1 ABC 3 transport family Pyr_redox_2 PF07992.14 gi|344210224|ref|YP_004786400.1| - 7.8e-07 28.6 0.0 1.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|344210224|ref|YP_004786400.1| - 2.7e-05 23.6 0.2 0.049 12.9 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|344210224|ref|YP_004786400.1| - 0.00011 21.5 1.3 0.00065 18.9 0.1 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|344210224|ref|YP_004786400.1| - 0.00011 21.4 1.5 0.00013 21.2 0.2 1.8 2 1 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|344210224|ref|YP_004786400.1| - 0.0015 17.4 0.0 0.0086 14.8 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|344210224|ref|YP_004786400.1| - 0.002 18.3 0.2 0.0047 17.1 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|344210224|ref|YP_004786400.1| - 0.0023 17.4 0.8 0.0023 17.4 0.8 1.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|344210224|ref|YP_004786400.1| - 0.0028 17.0 0.0 0.0058 15.9 0.0 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|344210224|ref|YP_004786400.1| - 0.0059 15.9 1.9 0.013 14.8 0.2 2.1 1 1 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|344210224|ref|YP_004786400.1| - 0.0094 15.6 14.2 0.022 14.4 0.9 3.2 1 1 1 3 3 3 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|344210224|ref|YP_004786400.1| - 0.068 12.2 0.8 0.23 10.5 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|344210224|ref|YP_004786400.1| - 0.31 11.0 5.7 0.76 9.8 0.4 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding RPE65 PF03055.15 gi|344210225|ref|YP_004786401.1| - 1.3e-110 370.7 0.1 1.5e-110 370.6 0.1 1.0 1 0 0 1 1 1 1 Retinal pigment epithelial membrane protein EamA PF00892.20 gi|344210226|ref|YP_004786402.1| - 1.1e-38 132.5 35.4 1.4e-20 73.8 7.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|344210226|ref|YP_004786402.1| - 0.088 12.3 5.8 0.32 10.5 1.6 2.2 1 1 1 2 2 2 0 Solute carrier family 35 zf_Rg PF17915.1 gi|344210227|ref|YP_004786403.1| - 0.43 10.0 8.9 1.1 8.8 0.6 2.9 1 1 1 2 2 2 0 Reverse gyrase zinc finger RNHCP PF12647.7 gi|344210227|ref|YP_004786403.1| - 0.45 10.5 8.0 0.1 12.6 2.3 2.3 2 1 0 2 2 2 0 RNHCP domain Methyltransf_25 PF13649.6 gi|344210228|ref|YP_004786404.1| - 1.3e-15 57.9 0.0 2.1e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|344210228|ref|YP_004786404.1| - 3.4e-14 53.2 0.0 5.4e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|344210228|ref|YP_004786404.1| - 8.9e-10 38.7 0.0 1.1e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|344210228|ref|YP_004786404.1| - 2.5e-09 37.1 0.1 3.1e-09 36.8 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|344210228|ref|YP_004786404.1| - 2.7e-08 33.6 0.0 4e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|344210228|ref|YP_004786404.1| - 4.7e-08 33.7 0.1 7.1e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|344210228|ref|YP_004786404.1| - 0.00024 20.6 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_24 PF13578.6 gi|344210228|ref|YP_004786404.1| - 0.0044 18.0 0.1 0.008 17.2 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|344210228|ref|YP_004786404.1| - 0.0054 16.5 0.0 0.0076 16.0 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF938) MTS PF05175.14 gi|344210228|ref|YP_004786404.1| - 0.0077 15.8 0.0 0.0096 15.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.11 gi|344210228|ref|YP_004786404.1| - 0.017 14.1 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|344210228|ref|YP_004786404.1| - 0.017 14.2 0.0 0.021 13.9 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme SHOCT PF09851.9 gi|344210229|ref|YP_004786405.1| - 8.7e-07 28.5 1.9 1.2e-06 28.1 1.9 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF4381 PF14316.6 gi|344210229|ref|YP_004786405.1| - 0.00027 21.2 0.3 0.00032 20.9 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4381) FtsL PF04999.13 gi|344210229|ref|YP_004786405.1| - 0.0015 18.4 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Cell division protein FtsL GvpG PF05120.12 gi|344210229|ref|YP_004786405.1| - 0.0016 18.4 0.6 0.0023 17.9 0.6 1.3 1 0 0 1 1 1 1 Gas vesicle protein G DUF1707 PF08044.11 gi|344210229|ref|YP_004786405.1| - 0.0042 17.1 0.6 0.006 16.6 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) PIG-P PF08510.12 gi|344210229|ref|YP_004786405.1| - 0.012 15.5 0.0 0.013 15.4 0.0 1.0 1 0 0 1 1 1 0 PIG-P VbhA PF18495.1 gi|344210229|ref|YP_004786405.1| - 0.026 14.4 0.6 0.036 13.9 0.6 1.3 1 0 0 1 1 1 0 Antitoxin VbhA CdvA PF18822.1 gi|344210229|ref|YP_004786405.1| - 0.031 14.1 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 CdvA-like coiled-coil domain DUF2681 PF10883.8 gi|344210229|ref|YP_004786405.1| - 0.04 14.3 0.1 0.048 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) TssO PF17561.2 gi|344210229|ref|YP_004786405.1| - 0.12 12.5 0.0 0.13 12.3 0.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssO DUF4307 PF14155.6 gi|344210229|ref|YP_004786405.1| - 0.13 12.1 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF3135 PF11333.8 gi|344210229|ref|YP_004786405.1| - 0.13 12.5 0.2 0.17 12.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3135) Pyridox_ox_2 PF12900.7 gi|344210230|ref|YP_004786406.1| - 1.9e-14 53.8 0.2 2.3e-14 53.6 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|344210230|ref|YP_004786406.1| - 0.00057 20.0 0.0 0.00084 19.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase FMN_bind_2 PF04299.12 gi|344210230|ref|YP_004786406.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.3 1 1 0 1 1 1 0 Putative FMN-binding domain AMP-binding PF00501.28 gi|344210231|ref|YP_004786407.1| - 2.9e-48 164.5 0.0 4.2e-48 164.0 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Hemerythrin PF01814.23 gi|344210231|ref|YP_004786407.1| - 5.5e-09 36.7 6.6 5.5e-09 36.7 6.6 2.1 3 0 0 3 3 3 1 Hemerythrin HHE cation binding domain AsnC_trans_reg2 PF17805.1 gi|344210231|ref|YP_004786407.1| - 0.071 13.3 0.0 0.69 10.1 0.0 2.4 2 0 0 2 2 2 0 AsnC-like ligand binding domain Phage_holin_3_6 PF07332.11 gi|344210232|ref|YP_004786408.1| - 0.26 11.3 7.5 0.29 11.2 7.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DZR PF12773.7 gi|344210233|ref|YP_004786409.1| - 0.12 12.5 0.8 0.19 11.8 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|344210233|ref|YP_004786409.1| - 0.23 11.5 1.6 0.57 10.2 1.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rrf2 PF02082.20 gi|344210235|ref|YP_004786411.1| - 0.035 14.4 0.2 0.11 12.9 0.2 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|344210235|ref|YP_004786411.1| - 0.12 12.2 1.6 1 9.2 1.3 2.8 3 1 0 3 3 3 0 IclR helix-turn-helix domain HTH_DeoR PF08220.12 gi|344210235|ref|YP_004786411.1| - 0.19 11.5 3.3 1.4 8.8 1.1 2.7 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Amidohydro_1 PF01979.20 gi|344210236|ref|YP_004786412.1| - 8.4e-49 166.7 0.1 9.9e-49 166.5 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210236|ref|YP_004786412.1| - 3e-19 69.9 2.6 6e-14 52.4 0.6 2.2 2 0 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.21 gi|344210236|ref|YP_004786412.1| - 0.014 14.8 0.1 0.023 14.1 0.1 1.3 1 0 0 1 1 1 0 TatD related DNase Amidohydro_1 PF01979.20 gi|344210237|ref|YP_004786413.1| - 2.2e-17 63.4 0.0 4e-17 62.5 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210237|ref|YP_004786413.1| - 7.4e-06 25.7 11.8 0.012 15.1 3.5 3.1 2 1 1 3 3 3 3 Amidohydrolase family Urease_alpha PF00449.20 gi|344210237|ref|YP_004786413.1| - 0.13 12.6 0.4 0.44 10.9 0.4 1.9 1 0 0 1 1 1 0 Urease alpha-subunit, N-terminal domain PALP PF00291.25 gi|344210238|ref|YP_004786414.1| - 3.9e-71 239.9 0.8 4.6e-71 239.6 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Bac_luciferase PF00296.20 gi|344210239|ref|YP_004786415.1| - 3.1e-59 200.9 0.0 3.8e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF3243 PF11588.8 gi|344210239|ref|YP_004786415.1| - 0.039 14.3 0.3 0.56 10.6 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3243) BPD_transp_2 PF02653.16 gi|344210240|ref|YP_004786416.1| - 6.6e-38 130.4 28.9 6.6e-38 130.4 28.9 1.5 1 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|344210241|ref|YP_004786417.1| - 1.8e-34 119.1 32.7 1.8e-34 119.1 32.7 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|344210242|ref|YP_004786418.1| - 2.3e-47 160.9 0.0 5e-29 101.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|344210242|ref|YP_004786418.1| - 7.4e-10 39.1 0.9 0.00054 19.9 0.0 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|344210242|ref|YP_004786418.1| - 0.012 15.4 0.6 0.03 14.0 0.0 1.9 3 0 0 3 3 3 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|344210242|ref|YP_004786418.1| - 0.013 15.5 0.1 0.39 10.6 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|344210242|ref|YP_004786418.1| - 0.03 13.9 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|344210242|ref|YP_004786418.1| - 0.038 13.7 0.0 0.22 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|344210242|ref|YP_004786418.1| - 0.039 13.7 0.1 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|344210242|ref|YP_004786418.1| - 0.064 13.8 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|344210242|ref|YP_004786418.1| - 0.19 11.5 0.1 0.36 10.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein Bmp PF02608.14 gi|344210243|ref|YP_004786419.1| - 4e-44 150.8 0.0 4.9e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Bmp PF02608.14 gi|344210244|ref|YP_004786420.1| - 4.1e-43 147.5 0.0 5.1e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Amidohydro_3 PF07969.11 gi|344210245|ref|YP_004786421.1| - 2.2e-26 93.4 3.2 4.1e-25 89.2 3.2 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|344210245|ref|YP_004786421.1| - 6.6e-12 45.4 0.0 1.2e-05 24.9 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Peptidase_M20 PF01546.28 gi|344210246|ref|YP_004786422.1| - 2.6e-33 115.5 0.9 6e-33 114.3 0.6 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|344210246|ref|YP_004786422.1| - 1e-07 31.8 0.0 2.1e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|344210246|ref|YP_004786422.1| - 5.1e-06 26.3 0.0 9.1e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 Fer2_2 PF01799.20 gi|344210247|ref|YP_004786423.1| - 1.6e-29 101.8 0.0 3.3e-29 100.7 0.0 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|344210247|ref|YP_004786423.1| - 4e-05 23.5 1.3 4e-05 23.5 1.3 3.1 3 1 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|344210247|ref|YP_004786423.1| - 0.0013 18.7 0.2 0.0025 17.8 0.2 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|344210248|ref|YP_004786424.1| - 4.3e-145 484.3 4.2 5.8e-145 483.8 4.2 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|344210248|ref|YP_004786424.1| - 1.5e-22 80.0 1.5 2.8e-22 79.1 1.5 1.5 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MarR_2 PF12802.7 gi|344210249|ref|YP_004786425.1| - 3.3e-06 26.9 0.0 6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|344210249|ref|YP_004786425.1| - 0.0056 16.6 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|344210249|ref|YP_004786425.1| - 0.0059 16.4 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|344210249|ref|YP_004786425.1| - 0.019 15.1 0.0 0.03 14.5 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Shadoo PF14999.6 gi|344210249|ref|YP_004786425.1| - 0.035 14.2 0.2 0.046 13.8 0.2 1.1 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective TrmB PF01978.19 gi|344210249|ref|YP_004786425.1| - 0.21 11.5 0.0 0.3 11.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|344210249|ref|YP_004786425.1| - 0.25 11.2 0.0 0.43 10.5 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit PemK_toxin PF02452.17 gi|344210250|ref|YP_004786426.1| - 0.081 13.3 0.0 0.092 13.1 0.0 1.1 1 0 0 1 1 1 0 PemK-like, MazF-like toxin of type II toxin-antitoxin system Fer2_2 PF01799.20 gi|344210251|ref|YP_004786427.1| - 9.5e-33 112.1 4.9 1e-32 112.0 0.1 2.2 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|344210251|ref|YP_004786427.1| - 1.2e-08 34.8 0.5 1.2e-08 34.8 0.5 2.5 3 2 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|344210251|ref|YP_004786427.1| - 4.8e-06 26.5 1.1 1.1e-05 25.3 0.2 2.1 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|344210251|ref|YP_004786427.1| - 0.0019 18.2 1.1 0.0084 16.1 1.1 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|344210252|ref|YP_004786428.1| - 1.2e-149 499.3 0.1 1.6e-149 498.9 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|344210252|ref|YP_004786428.1| - 3.9e-24 85.1 0.1 8.6e-24 84.0 0.1 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DrsE PF02635.15 gi|344210253|ref|YP_004786429.1| - 6.6e-31 107.1 0.0 7.4e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE PF02635.15 gi|344210254|ref|YP_004786430.1| - 2.2e-08 34.5 0.0 2.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|344210255|ref|YP_004786431.1| - 2.5e-05 24.3 0.6 0.00019 21.5 0.6 1.9 1 1 0 1 1 1 1 DsrH like protein XdhC_C PF13478.6 gi|344210256|ref|YP_004786432.1| - 4.1e-36 124.3 1.8 3.7e-35 121.2 0.1 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain XdhC_CoxI PF02625.16 gi|344210256|ref|YP_004786432.1| - 1.5e-17 63.5 1.4 1.5e-17 63.5 1.4 3.6 5 1 0 5 5 5 1 XdhC and CoxI family Pyr_redox PF00070.27 gi|344210256|ref|YP_004786432.1| - 0.004 17.7 1.6 0.046 14.3 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|344210256|ref|YP_004786432.1| - 0.0062 15.8 2.4 0.022 14.0 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|344210256|ref|YP_004786432.1| - 0.0093 16.2 1.7 4.4 7.6 0.0 2.7 2 0 0 2 2 2 2 TrkA-N domain 3HCDH_N PF02737.18 gi|344210256|ref|YP_004786432.1| - 0.025 14.5 1.5 0.66 9.8 0.3 2.5 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|344210256|ref|YP_004786432.1| - 0.045 13.8 1.6 0.074 13.1 0.2 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|344210256|ref|YP_004786432.1| - 0.061 12.7 0.9 7 6.0 0.0 2.7 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATP-synt_ab_Xtn PF16886.5 gi|344210256|ref|YP_004786432.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension AIRS_C PF02769.22 gi|344210257|ref|YP_004786433.1| - 5.1e-19 68.9 0.0 9e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|344210257|ref|YP_004786433.1| - 2e-11 44.4 1.6 6e-11 42.8 1.6 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TusA PF01206.17 gi|344210258|ref|YP_004786434.1| - 1.2e-15 57.1 0.0 1.5e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|344210258|ref|YP_004786434.1| - 0.012 15.5 0.1 0.013 15.4 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) NTP_transf_3 PF12804.7 gi|344210260|ref|YP_004786436.1| - 3.9e-37 128.1 1.0 4.8e-37 127.8 1.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|344210260|ref|YP_004786436.1| - 0.012 15.5 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase Ribonuc_L-PSP PF01042.21 gi|344210261|ref|YP_004786437.1| - 7.1e-38 129.3 0.1 7.9e-38 129.2 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Amidohydro_1 PF01979.20 gi|344210262|ref|YP_004786438.1| - 5.2e-67 226.6 0.2 6.2e-67 226.3 0.2 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|344210262|ref|YP_004786438.1| - 4.4e-11 42.9 3.2 4.5e-11 42.9 0.5 2.0 2 0 0 2 2 2 1 Amidohydrolase family A_deaminase PF00962.22 gi|344210262|ref|YP_004786438.1| - 0.0024 17.3 0.0 0.004 16.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Ribosomal_S17e PF00833.18 gi|344210263|ref|YP_004786439.1| - 0.055 13.4 0.0 0.057 13.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal S17 NAD_synthase PF02540.17 gi|344210264|ref|YP_004786440.1| - 1.2e-46 158.8 0.0 1.5e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_Tnp_ISL3 PF13542.6 gi|344210264|ref|YP_004786440.1| - 0.026 13.9 0.1 0.074 12.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_38 PF13936.6 gi|344210264|ref|YP_004786440.1| - 0.056 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|344210264|ref|YP_004786440.1| - 0.13 12.1 0.1 0.34 10.8 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_31 PF13560.6 gi|344210264|ref|YP_004786440.1| - 0.22 11.9 1.4 8.7 6.8 0.1 2.8 2 0 0 2 2 2 0 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|344210265|ref|YP_004786441.1| - 0.046 13.7 0.7 0.082 12.9 0.7 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|344210265|ref|YP_004786441.1| - 0.44 10.3 2.0 0.51 10.1 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbon domain FlaC_arch PF05377.11 gi|344210266|ref|YP_004786442.1| - 1.1e-06 28.9 33.9 0.44 11.0 0.1 8.0 4 3 4 8 8 8 2 Flagella accessory protein C (FlaC) FliJ PF02050.16 gi|344210266|ref|YP_004786442.1| - 2.5e-06 27.7 42.5 0.0002 21.6 7.5 5.1 4 2 1 5 5 4 2 Flagellar FliJ protein TPR_MLP1_2 PF07926.12 gi|344210266|ref|YP_004786442.1| - 1.1e-05 25.5 60.0 0.043 13.9 20.2 6.0 1 1 3 5 5 5 3 TPR/MLP1/MLP2-like protein ABC_tran_CTD PF16326.5 gi|344210266|ref|YP_004786442.1| - 2.5e-05 24.4 54.4 0.031 14.5 4.2 5.7 3 1 3 6 6 6 3 ABC transporter C-terminal domain DUF2353 PF09789.9 gi|344210266|ref|YP_004786442.1| - 6.4e-05 22.5 14.6 6.4e-05 22.5 14.6 3.1 2 1 1 3 3 3 2 Uncharacterized coiled-coil protein (DUF2353) AAA_13 PF13166.6 gi|344210266|ref|YP_004786442.1| - 6.7e-05 21.8 34.4 0.28 9.8 34.1 3.6 1 1 1 2 2 2 1 AAA domain Atg14 PF10186.9 gi|344210266|ref|YP_004786442.1| - 0.0001 21.5 38.0 0.00071 18.8 11.9 3.0 2 1 1 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 SMC_N PF02463.19 gi|344210266|ref|YP_004786442.1| - 0.00011 21.8 1.2 0.094 12.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain CENP-F_leu_zip PF10473.9 gi|344210266|ref|YP_004786442.1| - 0.00016 21.7 57.2 0.025 14.6 11.0 4.8 2 2 3 5 5 5 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|344210266|ref|YP_004786442.1| - 0.00016 22.2 39.3 49 4.3 39.3 3.7 1 1 0 1 1 1 0 AAA domain Spc7 PF08317.11 gi|344210266|ref|YP_004786442.1| - 0.00018 20.5 56.0 0.024 13.5 18.6 3.7 2 2 1 3 3 3 3 Spc7 kinetochore protein DUF1664 PF07889.12 gi|344210266|ref|YP_004786442.1| - 0.00019 21.5 29.5 0.35 10.9 6.3 5.0 3 1 1 4 4 4 3 Protein of unknown function (DUF1664) GAS PF13851.6 gi|344210266|ref|YP_004786442.1| - 0.0005 19.5 45.2 0.064 12.6 3.3 4.3 3 1 1 4 4 4 3 Growth-arrest specific micro-tubule binding TolA_bind_tri PF16331.5 gi|344210266|ref|YP_004786442.1| - 0.00079 19.5 40.9 0.034 14.2 0.2 6.4 4 3 2 6 6 6 2 TolA binding protein trimerisation DUF724 PF05266.14 gi|344210266|ref|YP_004786442.1| - 0.001 18.9 8.5 0.001 18.9 8.5 4.0 2 2 2 4 4 4 1 Protein of unknown function (DUF724) NPV_P10 PF05531.12 gi|344210266|ref|YP_004786442.1| - 0.001 19.5 29.0 0.066 13.7 1.2 5.8 3 1 2 5 5 5 2 Nucleopolyhedrovirus P10 protein CorA PF01544.18 gi|344210266|ref|YP_004786442.1| - 0.0015 17.9 10.9 0.0015 17.9 10.9 4.0 1 1 3 4 4 4 1 CorA-like Mg2+ transporter protein Laminin_II PF06009.12 gi|344210266|ref|YP_004786442.1| - 0.0022 18.0 36.7 0.046 13.7 9.4 4.2 2 2 3 5 5 5 3 Laminin Domain II AAA_21 PF13304.6 gi|344210266|ref|YP_004786442.1| - 0.0028 17.5 0.5 0.0028 17.5 0.5 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system HemX PF04375.14 gi|344210266|ref|YP_004786442.1| - 0.0062 15.9 8.3 0.0062 15.9 8.3 4.1 2 2 2 4 4 4 1 HemX, putative uroporphyrinogen-III C-methyltransferase Seryl_tRNA_N PF02403.22 gi|344210266|ref|YP_004786442.1| - 0.0073 16.5 40.6 0.016 15.4 2.6 5.2 3 2 1 4 4 4 2 Seryl-tRNA synthetase N-terminal domain Alpha-2-MRAP_C PF06401.11 gi|344210266|ref|YP_004786442.1| - 0.0077 16.2 11.9 0.0077 16.2 11.9 2.5 2 1 0 2 2 2 1 Alpha-2-macroglobulin RAP, C-terminal domain DUF5082 PF16888.5 gi|344210266|ref|YP_004786442.1| - 0.0088 16.3 37.9 0.085 13.1 5.8 4.3 2 2 2 4 4 4 2 Domain of unknown function (DUF5082) Fez1 PF06818.15 gi|344210266|ref|YP_004786442.1| - 0.01 16.3 48.5 0.22 11.9 19.9 3.2 1 1 2 3 3 3 0 Fez1 TMF_TATA_bd PF12325.8 gi|344210266|ref|YP_004786442.1| - 0.011 16.0 55.8 0.05 13.8 7.1 5.4 2 2 3 5 5 3 0 TATA element modulatory factor 1 TATA binding Baculo_PEP_C PF04513.12 gi|344210266|ref|YP_004786442.1| - 0.011 15.7 26.2 0.016 15.3 3.1 4.3 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus PspA_IM30 PF04012.12 gi|344210266|ref|YP_004786442.1| - 0.014 15.0 51.3 0.23 11.0 21.1 3.2 2 2 0 2 2 2 0 PspA/IM30 family Phage_GP20 PF06810.11 gi|344210266|ref|YP_004786442.1| - 0.016 15.0 40.3 0.31 10.8 3.6 4.4 2 2 1 4 4 4 0 Phage minor structural protein GP20 Sec34 PF04136.15 gi|344210266|ref|YP_004786442.1| - 0.018 14.9 28.5 1.5 8.7 0.1 5.4 2 2 1 5 5 5 0 Sec34-like family Med14 PF08638.11 gi|344210266|ref|YP_004786442.1| - 0.022 14.2 2.1 0.39 10.1 0.1 3.2 2 1 0 3 3 3 0 Mediator complex subunit MED14 Exonuc_VII_L PF02601.15 gi|344210266|ref|YP_004786442.1| - 0.034 13.7 35.9 0.11 12.0 12.6 2.6 1 1 0 2 2 2 0 Exonuclease VII, large subunit ApbE PF02424.15 gi|344210266|ref|YP_004786442.1| - 0.035 13.6 0.3 0.035 13.6 0.3 2.0 2 1 0 2 2 2 0 ApbE family FPP PF05911.11 gi|344210266|ref|YP_004786442.1| - 0.05 11.8 40.6 0.02 13.1 18.0 2.3 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil Tropomyosin_1 PF12718.7 gi|344210266|ref|YP_004786442.1| - 0.07 13.3 57.0 1.7 8.8 11.3 4.2 2 2 0 2 2 2 0 Tropomyosin like MscS_porin PF12795.7 gi|344210266|ref|YP_004786442.1| - 0.13 11.8 64.3 0.23 11.0 25.7 4.2 2 2 0 2 2 2 0 Mechanosensitive ion channel porin domain MAD PF05557.13 gi|344210266|ref|YP_004786442.1| - 0.16 10.3 46.8 0.014 13.8 18.3 2.3 1 1 0 2 2 2 0 Mitotic checkpoint protein APG6_N PF17675.1 gi|344210266|ref|YP_004786442.1| - 0.17 12.5 67.0 1e+02 3.4 31.5 5.3 2 2 0 2 2 2 0 Apg6 coiled-coil region COG2 PF06148.11 gi|344210266|ref|YP_004786442.1| - 0.21 11.7 35.5 1.2 9.2 5.0 5.1 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3584 PF12128.8 gi|344210266|ref|YP_004786442.1| - 0.29 8.6 53.6 0.18 9.3 47.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3584) WEMBL PF05701.11 gi|344210266|ref|YP_004786442.1| - 0.42 9.3 50.1 0.059 12.1 23.0 2.8 1 1 2 3 3 3 0 Weak chloroplast movement under blue light Filament PF00038.21 gi|344210266|ref|YP_004786442.1| - 0.67 9.5 53.0 0.11 12.1 33.8 3.3 1 1 2 3 3 3 0 Intermediate filament protein DUF745 PF05335.13 gi|344210266|ref|YP_004786442.1| - 0.77 9.5 37.0 0.023 14.4 12.8 3.5 2 2 2 4 4 4 0 Protein of unknown function (DUF745) Jnk-SapK_ap_N PF09744.9 gi|344210266|ref|YP_004786442.1| - 0.8 9.9 60.3 0.021 15.0 16.8 4.0 2 2 2 4 4 4 0 JNK_SAPK-associated protein-1 IFT57 PF10498.9 gi|344210266|ref|YP_004786442.1| - 0.85 8.5 35.4 0.11 11.4 8.9 3.9 2 1 1 4 4 4 0 Intra-flagellar transport protein 57 ATG16 PF08614.11 gi|344210266|ref|YP_004786442.1| - 0.98 9.6 64.5 0.75 10.0 28.8 4.2 2 2 0 2 2 2 0 Autophagy protein 16 (ATG16) Vac_Fusion PF02346.16 gi|344210266|ref|YP_004786442.1| - 0.99 9.1 14.4 31 4.3 0.0 4.8 3 1 1 4 4 4 0 Chordopoxvirus multifunctional envelope protein A27 DUF4201 PF13870.6 gi|344210266|ref|YP_004786442.1| - 1 9.0 39.8 3 7.6 12.7 4.5 2 2 1 4 4 4 0 Domain of unknown function (DUF4201) MCPsignal PF00015.21 gi|344210266|ref|YP_004786442.1| - 1.3 8.8 21.6 0.22 11.3 1.3 3.8 2 2 3 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DHR10 PF18595.1 gi|344210266|ref|YP_004786442.1| - 1.4 9.0 71.2 0.093 12.8 8.4 5.7 2 2 3 5 5 5 0 Designed helical repeat protein 10 domain Fib_alpha PF08702.10 gi|344210266|ref|YP_004786442.1| - 1.4 9.1 33.9 0.22 11.7 4.2 4.4 2 2 0 4 4 4 0 Fibrinogen alpha/beta chain family CALCOCO1 PF07888.11 gi|344210266|ref|YP_004786442.1| - 2 7.2 52.4 0.039 12.8 18.9 2.6 2 1 1 3 3 3 0 Calcium binding and coiled-coil domain (CALCOCO1) like Cob_adeno_trans PF01923.18 gi|344210266|ref|YP_004786442.1| - 2.1 8.5 28.2 0.68 10.1 2.9 4.2 2 2 1 3 3 3 0 Cobalamin adenosyltransferase DUF2730 PF10805.8 gi|344210266|ref|YP_004786442.1| - 2.4 8.3 27.9 4.1 7.6 1.2 5.2 3 1 3 6 6 6 0 Protein of unknown function (DUF2730) Mod_r PF07200.13 gi|344210266|ref|YP_004786442.1| - 2.7 8.1 42.3 1.2 9.2 11.8 4.3 2 2 3 5 5 5 0 Modifier of rudimentary (Mod(r)) protein HIP1_clath_bdg PF16515.5 gi|344210266|ref|YP_004786442.1| - 3.1 8.4 53.6 2.8 8.6 10.5 4.9 2 2 3 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Prefoldin_2 PF01920.20 gi|344210266|ref|YP_004786442.1| - 3.3 7.7 51.3 1.9 8.5 4.2 7.7 3 3 4 7 7 7 0 Prefoldin subunit End3 PF12761.7 gi|344210266|ref|YP_004786442.1| - 3.5 7.7 42.6 0.26 11.4 13.6 3.4 2 1 1 3 3 3 0 Actin cytoskeleton-regulatory complex protein END3 HOOK PF05622.12 gi|344210266|ref|YP_004786442.1| - 3.5 5.6 56.4 2.2 6.3 29.5 2.8 1 1 1 2 2 2 0 HOOK protein FapA PF03961.13 gi|344210266|ref|YP_004786442.1| - 3.9 6.0 31.6 1.9 7.0 11.2 3.8 2 2 2 4 4 4 0 Flagellar Assembly Protein A DUF948 PF06103.11 gi|344210266|ref|YP_004786442.1| - 4 7.8 22.5 0.17 12.2 2.2 5.1 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|344210266|ref|YP_004786442.1| - 5.2 4.9 25.6 0.18 9.8 7.0 2.8 1 1 2 3 3 3 0 Prominin YscO-like PF16789.5 gi|344210266|ref|YP_004786442.1| - 6.1 6.8 43.0 5.3 7.0 11.0 4.4 2 2 1 3 3 3 0 YscO-like protein DUF4407 PF14362.6 gi|344210266|ref|YP_004786442.1| - 6.7 6.0 50.9 0.29 10.4 18.7 3.4 1 1 1 2 2 1 0 Domain of unknown function (DUF4407) Snapin_Pallidin PF14712.6 gi|344210266|ref|YP_004786442.1| - 6.9 7.2 35.3 7.4 7.1 2.7 4.8 3 1 0 4 4 4 0 Snapin/Pallidin FAM76 PF16046.5 gi|344210266|ref|YP_004786442.1| - 7.4 5.8 23.4 0.61 9.4 6.1 2.2 2 0 0 2 2 2 0 FAM76 protein Fzo_mitofusin PF04799.13 gi|344210266|ref|YP_004786442.1| - 7.7 6.0 27.2 3.1 7.3 1.6 5.1 3 1 2 5 5 5 0 fzo-like conserved region ApoO PF09769.9 gi|344210266|ref|YP_004786442.1| - 8.2 6.4 12.8 65 3.5 0.3 4.3 2 2 1 3 3 3 0 Apolipoprotein O BLOC1_2 PF10046.9 gi|344210266|ref|YP_004786442.1| - 8.3 6.8 33.9 6.3 7.2 2.2 5.5 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc24 PF08286.11 gi|344210266|ref|YP_004786442.1| - 9.4 6.5 52.5 0.12 12.6 4.7 7.1 2 2 3 5 5 5 0 Spc24 subunit of Ndc80 GAF_2 PF13185.6 gi|344210268|ref|YP_004786444.1| - 1.2e-46 158.4 1.2 1.2e-15 58.0 0.2 4.4 4 0 0 4 4 4 4 GAF domain BAT PF15915.5 gi|344210268|ref|YP_004786444.1| - 8.6e-38 129.7 3.3 8.6e-38 129.7 3.3 2.1 2 0 0 2 2 2 1 GAF and HTH_10 associated domain GAF PF01590.26 gi|344210268|ref|YP_004786444.1| - 4.2e-22 79.2 0.0 7.5e-07 29.9 0.0 4.5 4 0 0 4 4 4 3 GAF domain Response_reg PF00072.24 gi|344210268|ref|YP_004786444.1| - 9.4e-20 70.9 0.0 3e-19 69.2 0.0 1.9 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|344210268|ref|YP_004786444.1| - 1.9e-19 70.3 0.0 3.1e-05 24.3 0.0 4.6 4 0 0 4 4 4 3 GAF domain HTH_10 PF04967.12 gi|344210268|ref|YP_004786444.1| - 1.2e-16 60.2 0.0 4.8e-16 58.3 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain OKR_DC_1_N PF03709.15 gi|344210268|ref|YP_004786444.1| - 8.9e-06 26.0 0.1 0.00015 22.0 0.0 3.0 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain Sigma70_r4 PF04545.16 gi|344210268|ref|YP_004786444.1| - 0.00069 19.1 0.0 0.0024 17.4 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|344210268|ref|YP_004786444.1| - 0.0036 17.1 0.0 0.0088 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|344210268|ref|YP_004786444.1| - 0.0043 17.1 0.0 0.073 13.1 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|344210268|ref|YP_004786444.1| - 0.0088 15.6 0.0 0.038 13.5 0.0 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|344210268|ref|YP_004786444.1| - 0.014 15.0 0.2 0.24 11.1 0.0 3.1 2 1 0 2 2 2 0 Sigma-70, region 4 DUF1492 PF07374.11 gi|344210268|ref|YP_004786444.1| - 0.22 11.7 2.0 22 5.3 0.0 3.1 4 0 0 4 4 3 0 Protein of unknown function (DUF1492) DUF4349 PF14257.6 gi|344210268|ref|YP_004786444.1| - 0.41 10.0 5.2 1.1 8.6 5.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) HalOD1 PF18545.1 gi|344210269|ref|YP_004786445.1| - 4.4e-24 84.5 0.4 5e-24 84.3 0.4 1.0 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4131 PF13567.6 gi|344210270|ref|YP_004786446.1| - 0.089 12.4 2.0 3 7.5 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) HTH_11 PF08279.12 gi|344210270|ref|YP_004786446.1| - 0.11 12.5 0.1 0.27 11.2 0.1 1.7 1 0 0 1 1 1 0 HTH domain DUF3071 PF11268.8 gi|344210272|ref|YP_004786448.1| - 0.066 13.3 0.1 0.076 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3071) NTP_transferase PF00483.23 gi|344210273|ref|YP_004786449.1| - 3.1e-41 141.6 0.0 3.4e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|344210273|ref|YP_004786449.1| - 2.2e-14 54.1 0.0 2.5e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|344210273|ref|YP_004786449.1| - 6.3e-06 26.1 0.0 1.8e-05 24.6 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|344210275|ref|YP_004786451.1| - 5.5e-09 36.0 0.4 1.7e-08 34.5 0.3 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210275|ref|YP_004786451.1| - 3.9e-06 26.9 0.6 0.00048 20.1 0.6 2.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_7C PF02709.14 gi|344210275|ref|YP_004786451.1| - 9.9e-06 25.1 0.8 1.7e-05 24.4 0.8 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_2 PF10111.9 gi|344210275|ref|YP_004786451.1| - 2.5e-05 23.9 0.0 0.12 11.9 0.0 2.3 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|344210275|ref|YP_004786451.1| - 2.5e-05 24.3 0.0 3.7e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|344210275|ref|YP_004786451.1| - 0.0092 15.5 0.0 0.032 13.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 21 PrpR_N PF06506.11 gi|344210275|ref|YP_004786451.1| - 0.096 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Propionate catabolism activator PMT PF02366.18 gi|344210276|ref|YP_004786452.1| - 0.12 12.0 0.0 0.12 11.9 0.0 1.0 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase GFO_IDH_MocA PF01408.22 gi|344210277|ref|YP_004786453.1| - 4.1e-20 72.8 0.0 6.8e-20 72.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding_2 PF13380.6 gi|344210277|ref|YP_004786453.1| - 0.061 13.8 0.1 0.19 12.2 0.1 1.9 1 1 0 1 1 1 0 CoA binding domain DUF1349 PF07081.11 gi|344210277|ref|YP_004786453.1| - 0.066 12.9 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1349) Polysacc_synt_3 PF13440.6 gi|344210278|ref|YP_004786454.1| - 4.5e-76 255.9 4.8 4.5e-76 255.9 4.8 1.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|344210278|ref|YP_004786454.1| - 9.9e-31 107.1 7.3 9.9e-31 107.1 7.3 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|344210278|ref|YP_004786454.1| - 4.7e-14 52.6 19.1 4.7e-14 52.6 19.1 3.1 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Insulin_TMD PF17870.1 gi|344210278|ref|YP_004786454.1| - 0.14 12.3 3.2 0.88 9.7 1.8 2.9 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment DUF5010_C PF18099.1 gi|344210280|ref|YP_004786456.1| - 8.3e-69 228.8 13.7 6.9e-24 84.1 0.8 3.6 3 0 0 3 3 3 3 DUF5010 C-terminal domain CBM_6 PF03422.15 gi|344210280|ref|YP_004786456.1| - 2e-52 176.8 21.8 4.2e-19 69.1 2.4 4.3 4 0 0 4 4 4 3 Carbohydrate binding module (family 6) Glyco_hydro_114 PF03537.13 gi|344210280|ref|YP_004786456.1| - 7.7e-05 22.1 3.6 0.58 9.4 0.0 3.3 3 0 0 3 3 3 3 Glycoside-hydrolase family GH114 Endotoxin_C PF03944.14 gi|344210280|ref|YP_004786456.1| - 0.00022 21.6 0.2 0.74 10.1 0.0 4.3 4 1 0 4 4 4 1 delta endotoxin TcfC PF16967.5 gi|344210280|ref|YP_004786456.1| - 0.017 14.6 0.0 5.8 6.5 0.0 3.6 3 0 0 3 3 3 0 E-set like domain Neuraminidase PF18413.1 gi|344210280|ref|YP_004786456.1| - 1.2 8.7 8.5 1.5 8.5 0.3 3.1 2 1 1 3 3 3 0 Neuraminidase-like domain NESP55 PF06390.12 gi|344210280|ref|YP_004786456.1| - 4.6 6.8 10.4 9.6 5.7 10.4 1.4 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Mtd_N PF18454.1 gi|344210281|ref|YP_004786457.1| - 0.0058 16.6 0.1 0.025 14.6 0.1 2.1 2 0 0 2 2 2 1 Major tropism determinant N-terminal domain Glycos_transf_1 PF00534.20 gi|344210283|ref|YP_004786459.1| - 1.3e-34 119.2 0.0 2e-34 118.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210283|ref|YP_004786459.1| - 7.2e-31 107.4 0.0 1.3e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210283|ref|YP_004786459.1| - 4.1e-11 43.2 0.0 7.7e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210283|ref|YP_004786459.1| - 4e-09 37.1 0.0 1.7e-08 35.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210283|ref|YP_004786459.1| - 2.8e-07 30.8 0.0 5.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Sulfatase PF00884.23 gi|344210284|ref|YP_004786460.1| - 1.5e-15 57.4 0.2 1.1e-13 51.2 0.1 2.3 2 0 0 2 2 2 2 Sulfatase Phosphodiest PF01663.22 gi|344210284|ref|YP_004786460.1| - 0.0018 17.9 0.3 0.046 13.3 0.0 2.1 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|344210284|ref|YP_004786460.1| - 0.003 16.2 0.0 0.0036 16.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.26 gi|344210285|ref|YP_004786461.1| - 4.5e-27 94.9 0.1 7.2e-27 94.3 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210285|ref|YP_004786461.1| - 2.6e-17 63.5 0.0 3.2e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|344210285|ref|YP_004786461.1| - 5.9e-11 42.4 0.0 8.5e-11 41.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Rhamno_transf PF11316.8 gi|344210285|ref|YP_004786461.1| - 0.051 13.0 0.0 0.092 12.1 0.0 1.3 1 0 0 1 1 1 0 Putative rhamnosyl transferase Atu4866 PF11512.8 gi|344210285|ref|YP_004786461.1| - 0.56 10.6 2.9 20 5.6 0.3 2.6 1 1 1 2 2 2 0 Agrobacterium tumefaciens protein Atu4866 PMT_2 PF13231.6 gi|344210286|ref|YP_004786462.1| - 0.0012 19.1 8.2 0.0012 19.1 8.2 3.2 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PTPS_related PF10131.9 gi|344210286|ref|YP_004786462.1| - 0.048 12.0 20.4 0.34 9.2 20.4 2.0 1 1 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein TMEM220 PF15071.6 gi|344210286|ref|YP_004786462.1| - 1.7 9.5 7.7 13 6.6 0.3 3.4 3 1 1 4 4 4 0 Transmembrane family 220, helix DUF4956 PF16316.5 gi|344210286|ref|YP_004786462.1| - 5.1 6.7 9.0 0.42 10.3 1.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4956) Tmemb_14 PF03647.13 gi|344210286|ref|YP_004786462.1| - 5.4 7.8 24.7 0.46 11.3 3.5 4.1 3 1 1 4 4 4 0 Transmembrane proteins 14C Glycos_transf_1 PF00534.20 gi|344210287|ref|YP_004786463.1| - 1.4e-32 112.6 0.0 2.4e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210287|ref|YP_004786463.1| - 9.7e-31 107.0 0.0 7.4e-30 104.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210287|ref|YP_004786463.1| - 1.8e-27 96.4 0.1 2.9e-27 95.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210287|ref|YP_004786463.1| - 4.6e-21 75.9 0.0 8.8e-21 75.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210287|ref|YP_004786463.1| - 3.1e-09 37.1 0.0 5.8e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344210287|ref|YP_004786463.1| - 5.9e-05 23.1 0.0 9.9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|344210287|ref|YP_004786463.1| - 0.0053 16.5 0.2 0.017 14.8 0.2 1.8 1 1 0 1 1 1 1 Starch synthase catalytic domain Asn_synthase PF00733.21 gi|344210288|ref|YP_004786464.1| - 1.1e-92 311.5 0.6 1.4e-92 311.2 0.6 1.1 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.6 gi|344210288|ref|YP_004786464.1| - 8.2e-46 154.9 0.0 1.4e-45 154.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|344210288|ref|YP_004786464.1| - 2.4e-42 144.3 0.0 4.7e-42 143.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain QueC PF06508.13 gi|344210288|ref|YP_004786464.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF3700 PF12481.8 gi|344210288|ref|YP_004786464.1| - 0.023 14.2 0.0 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 Aluminium induced protein NAD_synthase PF02540.17 gi|344210288|ref|YP_004786464.1| - 0.18 10.9 0.0 0.33 10.0 0.0 1.4 1 0 0 1 1 1 0 NAD synthase Glycos_transf_1 PF00534.20 gi|344210289|ref|YP_004786465.1| - 4.2e-32 111.0 0.0 7.3e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|344210289|ref|YP_004786465.1| - 1.4e-28 99.9 0.0 6.2e-28 97.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|344210289|ref|YP_004786465.1| - 1.6e-22 80.3 0.0 2.7e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|344210289|ref|YP_004786465.1| - 7.7e-18 65.4 0.2 3.8e-17 63.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|344210289|ref|YP_004786465.1| - 8.7e-06 26.1 0.0 2.2e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|344210289|ref|YP_004786465.1| - 0.0013 18.8 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like NTP_transf_2 PF01909.23 gi|344210289|ref|YP_004786465.1| - 0.1 12.9 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain DUF1616 PF07760.11 gi|344210290|ref|YP_004786466.1| - 2.5e-72 243.7 3.8 2.9e-72 243.5 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Bax1-I PF01027.20 gi|344210290|ref|YP_004786466.1| - 0.0071 16.2 3.6 0.0071 16.2 3.6 1.7 1 1 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 DUF1129 PF06570.11 gi|344210290|ref|YP_004786466.1| - 0.022 14.3 0.7 0.037 13.5 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) TMEM132D_C PF15706.5 gi|344210290|ref|YP_004786466.1| - 0.21 11.4 1.4 9 6.2 0.3 3.3 3 1 1 4 4 4 0 Mature oligodendrocyte transmembrane protein, TMEM132D, C-term 7TMR-DISM_7TM PF07695.11 gi|344210290|ref|YP_004786466.1| - 7.4 6.4 8.7 1.6 8.6 4.6 1.9 2 1 0 2 2 2 0 7TM diverse intracellular signalling Glycos_transf_2 PF00535.26 gi|344210291|ref|YP_004786467.1| - 4.7e-18 65.6 0.2 3.8e-16 59.4 0.2 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|344210291|ref|YP_004786467.1| - 4.4e-05 23.5 0.1 0.053 13.4 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|344210291|ref|YP_004786467.1| - 0.0023 18.4 0.0 0.0078 16.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 CARDB PF07705.11 gi|344210292|ref|YP_004786468.1| - 1.2e-14 54.4 24.7 5e-05 23.5 0.3 4.5 4 0 0 4 4 4 4 CARDB Fn3-like PF14310.6 gi|344210292|ref|YP_004786468.1| - 0.00022 21.3 3.4 1 9.6 0.0 4.7 5 1 0 5 5 5 2 Fibronectin type III-like domain Cupredoxin_1 PF13473.6 gi|344210292|ref|YP_004786468.1| - 0.00047 20.2 1.1 1.9 8.6 0.0 4.8 3 3 1 5 5 5 1 Cupredoxin-like domain DUF4832 PF16116.5 gi|344210292|ref|YP_004786468.1| - 0.00048 20.0 6.1 0.69 9.7 0.0 3.6 3 1 0 3 3 3 2 Domain of unknown function (DUF4832) A2M PF00207.22 gi|344210292|ref|YP_004786468.1| - 0.0037 17.1 1.3 4 7.3 0.0 3.7 3 0 0 3 3 3 2 Alpha-2-macroglobulin family DUF1616 PF07760.11 gi|344210292|ref|YP_004786468.1| - 0.007 15.8 0.2 0.007 15.8 0.2 4.2 3 1 3 6 6 6 1 Protein of unknown function (DUF1616) DUF3872 PF12988.7 gi|344210292|ref|YP_004786468.1| - 0.041 13.7 0.5 11 5.8 0.0 4.0 4 1 0 4 4 4 0 Domain of unknown function, B. Theta Gene description (DUF3872) N_BRCA1_IG PF16158.5 gi|344210292|ref|YP_004786468.1| - 0.13 13.0 2.5 0.77 10.5 0.1 3.4 4 1 1 5 5 5 0 Ig-like domain from next to BRCA1 gene Big_7 PF17957.1 gi|344210292|ref|YP_004786468.1| - 1.2 9.9 36.9 0.3 11.9 4.2 5.0 5 0 0 5 5 5 0 Bacterial Ig domain Dicty_REP PF05086.12 gi|344210292|ref|YP_004786468.1| - 2.5 6.0 4.4 4.4 5.2 4.4 1.3 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein Ig_GlcNase PF18368.1 gi|344210292|ref|YP_004786468.1| - 5.1 7.3 7.1 3.5 7.8 0.0 3.6 3 1 1 4 4 4 0 Exo-beta-D-glucosaminidase Ig-fold domain HTH_45 PF14947.6 gi|344210293|ref|YP_004786469.1| - 0.00038 20.4 0.0 0.00038 20.4 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Replic_Relax PF13814.6 gi|344210293|ref|YP_004786469.1| - 0.0043 17.1 0.0 0.0043 17.1 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation DUF4364 PF14277.6 gi|344210293|ref|YP_004786469.1| - 0.0096 15.7 0.0 0.01 15.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|344210293|ref|YP_004786469.1| - 0.025 15.1 0.1 0.03 14.8 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|344210293|ref|YP_004786469.1| - 0.04 13.9 0.1 0.045 13.7 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.14 gi|344210293|ref|YP_004786469.1| - 0.051 13.5 0.0 0.053 13.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Trp_oprn_chp PF09534.10 gi|344210294|ref|YP_004786470.1| - 0.05 13.4 0.1 0.08 12.7 0.1 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) HTH_20 PF12840.7 gi|344210294|ref|YP_004786470.1| - 0.065 13.3 0.0 0.17 12.0 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain TMEM232 PF15877.5 gi|344210294|ref|YP_004786470.1| - 0.087 11.8 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein family 232 DUF3040 PF11239.8 gi|344210294|ref|YP_004786470.1| - 0.099 12.9 0.1 0.19 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF2892 PF11127.8 gi|344210294|ref|YP_004786470.1| - 3.6 7.7 7.7 6.3 6.9 7.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Amidohydro_3 PF07969.11 gi|344210295|ref|YP_004786471.1| - 4.4e-10 39.6 0.7 0.00014 21.5 0.0 2.5 3 0 0 3 3 3 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|344210295|ref|YP_004786471.1| - 0.00012 21.5 0.6 0.0025 17.2 0.0 2.9 2 1 0 2 2 2 1 Amidohydrolase family GFO_IDH_MocA PF01408.22 gi|344210296|ref|YP_004786472.1| - 8.4e-21 75.0 0.0 1.8e-20 74.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|344210296|ref|YP_004786472.1| - 0.012 15.6 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Hydrolase_6 PF13344.6 gi|344210297|ref|YP_004786473.1| - 3.4e-23 81.7 0.0 2.8e-22 78.7 0.0 2.4 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase NUDIX PF00293.28 gi|344210297|ref|YP_004786473.1| - 4e-16 59.3 0.1 6.8e-16 58.5 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain Hydrolase_like PF13242.6 gi|344210297|ref|YP_004786473.1| - 1.5e-14 53.8 0.2 3.3e-14 52.7 0.2 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|344210297|ref|YP_004786473.1| - 2.5e-10 41.0 1.0 9.9e-10 39.0 0.9 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|344210297|ref|YP_004786473.1| - 0.00044 20.4 0.0 0.0026 17.9 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Peripla_BP_2 PF01497.18 gi|344210299|ref|YP_004786475.1| - 5.7e-10 39.2 0.0 1.1e-09 38.2 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein TmoB PF06234.12 gi|344210299|ref|YP_004786475.1| - 0.15 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Toluene-4-monooxygenase system protein B (TmoB) MarR_2 PF12802.7 gi|344210300|ref|YP_004786476.1| - 7.4e-08 32.2 0.1 2e-07 30.8 0.1 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|344210300|ref|YP_004786476.1| - 3.7e-07 30.0 0.0 7.1e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|344210300|ref|YP_004786476.1| - 0.00011 21.9 0.0 0.00027 20.7 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|344210300|ref|YP_004786476.1| - 0.0004 20.0 0.0 0.00087 18.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|344210300|ref|YP_004786476.1| - 0.00044 19.7 0.0 0.00072 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|344210300|ref|YP_004786476.1| - 0.0005 19.9 0.1 0.00087 19.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|344210300|ref|YP_004786476.1| - 0.0015 18.5 0.4 0.0027 17.6 0.3 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain RepL PF05732.11 gi|344210300|ref|YP_004786476.1| - 0.0034 16.8 0.0 0.0058 16.1 0.0 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_11 PF08279.12 gi|344210300|ref|YP_004786476.1| - 0.0077 16.2 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain TBPIP PF07106.13 gi|344210300|ref|YP_004786476.1| - 0.0085 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 TBPIP/Hop2 winged helix domain HTH_DeoR PF08220.12 gi|344210300|ref|YP_004786476.1| - 0.0093 15.7 0.1 0.018 14.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|344210300|ref|YP_004786476.1| - 0.01 15.8 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix HTH_27 PF13463.6 gi|344210300|ref|YP_004786476.1| - 0.011 16.2 0.0 0.026 15.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|344210300|ref|YP_004786476.1| - 0.014 15.3 0.0 0.038 13.9 0.0 1.8 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|344210300|ref|YP_004786476.1| - 0.015 15.2 0.0 0.044 13.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain 7TM-7TMR_HD PF07698.11 gi|344210300|ref|YP_004786476.1| - 0.02 14.7 0.6 0.028 14.2 0.6 1.3 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase HTH_20 PF12840.7 gi|344210300|ref|YP_004786476.1| - 0.026 14.6 0.2 0.097 12.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|344210300|ref|YP_004786476.1| - 0.079 13.3 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor RNA_pol_Rpc34 PF05158.12 gi|344210300|ref|YP_004786476.1| - 0.082 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Trp_repressor PF01371.19 gi|344210300|ref|YP_004786476.1| - 0.084 13.0 0.1 0.23 11.6 0.1 1.7 2 0 0 2 2 2 0 Trp repressor protein DUF4367 PF14285.6 gi|344210302|ref|YP_004786478.1| - 0.0026 18.2 0.0 0.0087 16.5 0.0 1.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4367) Pap_E4 PF02711.14 gi|344210302|ref|YP_004786478.1| - 2.3 9.2 4.1 10 7.1 1.8 2.5 2 0 0 2 2 2 0 E4 protein Oxidored_q6 PF01058.22 gi|344210303|ref|YP_004786479.1| - 7.7e-22 77.5 0.1 1.1e-21 77.1 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HTH_10 PF04967.12 gi|344210304|ref|YP_004786480.1| - 5.5e-17 61.3 0.0 8.7e-17 60.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_1 PF00126.27 gi|344210304|ref|YP_004786480.1| - 0.0028 17.6 0.0 0.0052 16.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family MarR_2 PF12802.7 gi|344210304|ref|YP_004786480.1| - 0.003 17.4 0.1 0.0072 16.2 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|344210304|ref|YP_004786480.1| - 0.003 17.6 0.0 0.024 14.7 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|344210304|ref|YP_004786480.1| - 0.0041 16.8 0.0 0.014 15.1 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|344210304|ref|YP_004786480.1| - 0.0056 16.2 0.0 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|344210304|ref|YP_004786480.1| - 0.0058 16.4 0.0 0.021 14.6 0.0 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|344210304|ref|YP_004786480.1| - 0.015 15.1 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|344210304|ref|YP_004786480.1| - 0.024 14.4 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|344210304|ref|YP_004786480.1| - 0.055 13.7 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|344210304|ref|YP_004786480.1| - 0.09 12.6 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/NC_015944.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/NC_015944.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/NC_015944.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_ATCC_33960_uid72475/NC_015944.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:19:06 2019 # [ok]