# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|344209486|ref|YP_004785663.1| - 1.6e-17 63.0 0.1 3e-17 62.1 0.1 1.5 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|344209486|ref|YP_004785663.1| - 8.6e-11 42.1 0.3 5.5e-09 36.2 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344209486|ref|YP_004785663.1| - 2.3e-09 37.5 0.0 8.8e-09 35.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|344209486|ref|YP_004785663.1| - 7e-09 35.9 0.1 3.5e-08 33.7 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|344209486|ref|YP_004785663.1| - 0.00052 19.7 0.0 0.0014 18.3 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase PaaX PF07848.7 gi|344209486|ref|YP_004785663.1| - 0.0023 17.9 0.0 0.0056 16.6 0.0 1.6 1 0 0 1 1 1 1 PaaX-like protein NACHT PF05729.7 gi|344209486|ref|YP_004785663.1| - 0.0033 17.0 0.0 0.0079 15.8 0.0 1.6 2 0 0 2 2 2 1 NACHT domain NHase_beta PF02211.10 gi|344209486|ref|YP_004785663.1| - 0.012 15.2 0.0 0.032 13.9 0.0 1.6 2 0 0 2 2 2 0 Nitrile hydratase beta subunit DUF815 PF05673.8 gi|344209486|ref|YP_004785663.1| - 0.025 13.4 0.0 0.044 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) T2SE PF00437.15 gi|344209486|ref|YP_004785663.1| - 0.073 11.9 0.0 0.16 10.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Kinesin PF00225.18 gi|344209486|ref|YP_004785663.1| - 0.076 11.7 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain E1-E2_ATPase PF00122.15 gi|344209487|ref|YP_004785664.1| - 2.4e-55 187.0 0.1 4.4e-55 186.2 0.0 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|344209487|ref|YP_004785664.1| - 6.1e-46 157.5 5.2 6.1e-46 157.5 3.6 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344209487|ref|YP_004785664.1| - 7.5e-21 75.1 0.1 3e-20 73.2 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344209487|ref|YP_004785664.1| - 0.00093 18.8 0.8 0.0023 17.5 0.3 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|344209487|ref|YP_004785664.1| - 0.0013 18.8 0.1 0.0047 17.0 0.0 2.0 2 0 0 2 2 2 1 Heavy-metal-associated domain TroA PF01297.12 gi|344209487|ref|YP_004785664.1| - 0.079 12.1 0.1 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 Periplasmic solute binding protein family Zein-binding PF04576.10 gi|344209487|ref|YP_004785664.1| - 0.091 12.8 0.4 0.27 11.3 0.3 1.7 1 0 0 1 1 1 0 Zein-binding DUF3391 PF11871.3 gi|344209487|ref|YP_004785664.1| - 0.1 12.7 0.1 2.3 8.4 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3391) ApbE PF02424.10 gi|344209488|ref|YP_004785665.1| - 0.00081 18.7 0.0 0.0016 17.7 0.0 1.5 1 1 0 1 1 1 1 ApbE family Abhydrolase_6 PF12697.2 gi|344209490|ref|YP_004785667.1| - 2.4e-11 43.9 10.4 2.2e-10 40.8 7.1 2.3 1 1 1 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|344209490|ref|YP_004785667.1| - 1.1e-08 34.9 0.5 8.6e-08 32.0 0.3 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|344209490|ref|YP_004785667.1| - 0.03 13.8 0.0 0.062 12.8 0.0 1.5 1 0 0 1 1 1 0 alpha/beta hydrolase fold HTH_5 PF01022.15 gi|344209491|ref|YP_004785668.1| - 6.8e-13 48.0 0.1 3.2e-12 45.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|344209491|ref|YP_004785668.1| - 7.3e-10 38.5 0.1 1.7e-09 37.3 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209491|ref|YP_004785668.1| - 9.1e-06 24.9 0.3 2.1e-05 23.8 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|344209491|ref|YP_004785668.1| - 0.00013 21.7 0.2 0.00017 21.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.5 gi|344209491|ref|YP_004785668.1| - 0.0044 16.5 0.1 0.011 15.3 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|344209491|ref|YP_004785668.1| - 0.0046 16.6 0.0 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|344209491|ref|YP_004785668.1| - 0.025 14.2 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Penicillinase_R PF03965.11 gi|344209491|ref|YP_004785668.1| - 0.049 13.7 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.7 gi|344209491|ref|YP_004785668.1| - 0.071 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.1 gi|344209491|ref|YP_004785668.1| - 0.075 12.5 0.0 0.089 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Cyd_oper_YbgE PF09600.5 gi|344209492|ref|YP_004785669.1| - 0.00041 20.4 0.5 0.00046 20.3 0.3 1.1 1 0 0 1 1 1 1 Cyd operon protein YbgE (Cyd_oper_YbgE) Peptidase_A24 PF01478.13 gi|344209492|ref|YP_004785669.1| - 0.099 12.8 0.8 0.11 12.6 0.6 1.2 1 0 0 1 1 1 0 Type IV leader peptidase family CD24 PF14984.1 gi|344209492|ref|YP_004785669.1| - 0.25 11.1 1.0 0.44 10.3 0.7 1.3 1 0 0 1 1 1 0 CD24 protein Cdc6_C PF09079.6 gi|344209494|ref|YP_004785671.1| - 6.1e-11 41.8 0.1 7.6e-11 41.5 0.1 1.1 1 0 0 1 1 1 1 CDC6, C terminal TrmB PF01978.14 gi|344209495|ref|YP_004785672.1| - 1.3e-07 31.2 0.1 3.1e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|344209495|ref|YP_004785672.1| - 0.0023 17.4 0.7 0.0072 15.8 0.0 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain Spiralin PF05215.8 gi|344209495|ref|YP_004785672.1| - 0.041 13.0 0.0 0.068 12.2 0.0 1.3 1 0 0 1 1 1 0 Spiralin HTH_DeoR PF08220.7 gi|344209495|ref|YP_004785672.1| - 0.08 12.4 0.1 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MdoG PF04349.7 gi|344209495|ref|YP_004785672.1| - 0.11 10.7 0.0 0.14 10.3 0.0 1.1 1 0 0 1 1 1 0 Periplasmic glucan biosynthesis protein, MdoG F-112 PF09645.5 gi|344209495|ref|YP_004785672.1| - 0.14 12.0 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 F-112 protein UPF0175 PF03683.8 gi|344209496|ref|YP_004785673.1| - 2.2e-15 55.8 0.5 3.3e-15 55.3 0.4 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) RHH_2 PF03693.9 gi|344209496|ref|YP_004785673.1| - 0.039 14.1 0.1 0.053 13.6 0.0 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0156) SnoaL_3 PF13474.1 gi|344209496|ref|YP_004785673.1| - 0.041 13.9 0.1 0.049 13.6 0.1 1.1 1 0 0 1 1 1 0 SnoaL-like domain DUF3368 PF11848.3 gi|344209497|ref|YP_004785674.1| - 0.046 13.2 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) PAS_8 PF13188.1 gi|344209497|ref|YP_004785674.1| - 0.087 12.7 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 PAS domain DUF3368 PF11848.3 gi|344209499|ref|YP_004785676.1| - 0.11 12.1 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3368) CbiA PF01656.18 gi|344209501|ref|YP_004785678.1| - 1.4e-22 80.0 0.0 1.9e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344209501|ref|YP_004785678.1| - 2e-05 24.5 0.0 0.0001 22.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|344209501|ref|YP_004785678.1| - 3.3e-05 23.0 0.0 0.00038 19.6 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|344209501|ref|YP_004785678.1| - 0.00053 19.4 0.1 0.0018 17.6 0.0 1.7 2 0 0 2 2 2 1 YhjQ protein ArsA_ATPase PF02374.10 gi|344209501|ref|YP_004785678.1| - 0.0015 17.6 0.0 0.0023 17.0 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|344209501|ref|YP_004785678.1| - 0.15 11.1 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Nop14 PF04147.7 gi|344209502|ref|YP_004785679.1| - 0.32 8.8 16.1 0.4 8.5 11.2 1.1 1 0 0 1 1 1 0 Nop14-like family DUF2151 PF10221.4 gi|344209502|ref|YP_004785679.1| - 0.54 8.3 6.4 0.61 8.1 4.4 1.0 1 0 0 1 1 1 0 Cell cycle and development regulator DUF1510 PF07423.6 gi|344209502|ref|YP_004785679.1| - 0.75 9.1 13.1 1 8.7 9.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Daxx PF03344.10 gi|344209502|ref|YP_004785679.1| - 1.1 7.6 13.9 1.2 7.5 9.6 1.0 1 0 0 1 1 1 0 Daxx Family Sporozoite_P67 PF05642.6 gi|344209502|ref|YP_004785679.1| - 3.8 5.2 12.7 4.9 4.8 8.8 1.1 1 0 0 1 1 1 0 Sporozoite P67 surface antigen SDA1 PF05285.7 gi|344209502|ref|YP_004785679.1| - 4.3 6.5 17.5 4.9 6.3 12.1 1.1 1 0 0 1 1 1 0 SDA1 DUF4661 PF15576.1 gi|344209502|ref|YP_004785679.1| - 8.9 5.8 6.6 10 5.6 3.7 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4661) MH2 PF03166.9 gi|344209504|ref|YP_004785681.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.0 1 0 0 1 1 1 0 MH2 domain MFS_3 PF05977.8 gi|344209506|ref|YP_004785683.1| - 6.3e-05 21.2 0.2 7.1e-05 21.1 0.1 1.0 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1 PF07690.11 gi|344209506|ref|YP_004785683.1| - 0.045 12.4 3.7 0.057 12.1 2.6 1.2 1 0 0 1 1 1 0 Major Facilitator Superfamily UvrD-helicase PF00580.16 gi|344209507|ref|YP_004785684.1| - 1.9e-47 162.0 0.0 3.6e-47 161.2 0.0 1.5 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|344209507|ref|YP_004785684.1| - 9.6e-37 127.2 0.0 4.9e-21 75.5 0.0 2.3 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|344209507|ref|YP_004785684.1| - 5.3e-12 45.3 0.0 2.1e-11 43.4 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|344209507|ref|YP_004785684.1| - 1.4e-10 41.0 1.4 6.5e-10 38.8 0.4 2.5 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|344209507|ref|YP_004785684.1| - 4.4e-09 36.4 0.0 0.003 17.6 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|344209507|ref|YP_004785684.1| - 5.8e-05 22.7 0.3 11 5.4 0.0 4.3 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|344209507|ref|YP_004785684.1| - 0.013 15.0 0.0 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_12 PF13087.1 gi|344209507|ref|YP_004785684.1| - 0.1 11.9 0.0 1.6 8.0 0.0 2.7 2 2 0 2 2 2 0 AAA domain Cas_Cas4 PF01930.12 gi|344209507|ref|YP_004785684.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|344209508|ref|YP_004785685.1| - 1.5e-17 63.8 0.6 4.5e-17 62.2 0.0 2.0 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.1 gi|344209508|ref|YP_004785685.1| - 0.0062 16.0 0.0 0.0094 15.4 0.0 1.3 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain CutA1 PF03091.10 gi|344209509|ref|YP_004785686.1| - 1.5e-26 92.0 0.0 1.6e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF1189 PF06691.6 gi|344209510|ref|YP_004785687.1| - 0.12 11.6 1.9 0.14 11.4 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) DUF4191 PF13829.1 gi|344209510|ref|YP_004785687.1| - 0.65 9.0 2.7 0.75 8.8 1.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF3784 PF12650.2 gi|344209510|ref|YP_004785687.1| - 1.1 9.2 6.6 1.4 8.9 4.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Glyoxalase_2 PF12681.2 gi|344209512|ref|YP_004785689.1| - 0.00053 20.5 0.0 0.00064 20.2 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Crystall_2 PF09076.5 gi|344209514|ref|YP_004785691.1| - 0.027 14.2 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 Beta/Gamma crystallin TOBE_2 PF08402.5 gi|344209514|ref|YP_004785691.1| - 0.35 10.8 1.5 5.8 6.9 0.7 2.0 1 1 1 2 2 2 0 TOBE domain Tropomyosin PF00261.15 gi|344209515|ref|YP_004785692.1| - 0.0061 15.6 8.7 0.011 14.8 6.0 1.3 1 0 0 1 1 1 1 Tropomyosin Baculo_PEP_C PF04513.7 gi|344209515|ref|YP_004785692.1| - 0.0062 16.3 0.9 0.011 15.5 0.5 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus GCOM2 PF15328.1 gi|344209515|ref|YP_004785692.1| - 0.045 13.4 2.4 0.056 13.1 1.7 1.3 1 0 0 1 1 1 0 Putative GRINL1B complex locus protein 2 HSBP1 PF06825.7 gi|344209515|ref|YP_004785692.1| - 0.095 12.2 0.3 2.6 7.6 0.0 2.4 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Synaptobrevin PF00957.16 gi|344209515|ref|YP_004785692.1| - 0.11 12.1 1.3 0.21 11.2 0.9 1.5 1 0 0 1 1 1 0 Synaptobrevin APG6 PF04111.7 gi|344209515|ref|YP_004785692.1| - 0.77 8.7 4.9 1.1 8.1 3.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 IncA PF04156.9 gi|344209515|ref|YP_004785692.1| - 0.93 9.0 4.0 1.9 8.0 2.8 1.5 1 0 0 1 1 1 0 IncA protein DUF1664 PF07889.7 gi|344209515|ref|YP_004785692.1| - 0.96 9.2 5.9 2.7 7.7 2.5 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) FUSC PF04632.7 gi|344209515|ref|YP_004785692.1| - 6.4 5.0 5.5 8.7 4.6 3.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PadR PF03551.9 gi|344209519|ref|YP_004785696.1| - 1.4e-12 47.2 0.1 1.7e-12 46.9 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|344209519|ref|YP_004785696.1| - 0.0034 17.1 0.0 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|344209519|ref|YP_004785696.1| - 0.004 16.7 0.0 0.0051 16.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HxlR PF01638.12 gi|344209519|ref|YP_004785696.1| - 0.0096 15.5 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_27 PF13463.1 gi|344209519|ref|YP_004785696.1| - 0.012 15.9 0.0 0.019 15.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.14 gi|344209519|ref|YP_004785696.1| - 0.013 15.4 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DUF3288 PF11691.3 gi|344209519|ref|YP_004785696.1| - 0.078 12.7 0.2 0.088 12.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) HTH_34 PF13601.1 gi|344209519|ref|YP_004785696.1| - 0.1 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|344209520|ref|YP_004785697.1| - 0.00054 19.2 0.0 0.00075 18.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344209520|ref|YP_004785697.1| - 0.0013 18.4 0.0 0.0013 18.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_1 PF00126.22 gi|344209520|ref|YP_004785697.1| - 0.0022 17.6 0.3 0.0033 17.1 0.2 1.4 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.2 gi|344209520|ref|YP_004785697.1| - 0.0049 16.6 0.0 0.0059 16.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Replic_Relax PF13814.1 gi|344209520|ref|YP_004785697.1| - 0.0074 16.1 0.0 0.0079 16.0 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation PadR PF03551.9 gi|344209520|ref|YP_004785697.1| - 0.042 13.6 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Ribosomal_S19e PF01090.14 gi|344209520|ref|YP_004785697.1| - 0.043 13.2 0.0 0.044 13.2 0.0 1.0 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_Crp_2 PF13545.1 gi|344209520|ref|YP_004785697.1| - 0.045 13.5 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|344209520|ref|YP_004785697.1| - 0.069 12.7 0.1 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HxlR PF01638.12 gi|344209520|ref|YP_004785697.1| - 0.12 12.0 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_45 PF14947.1 gi|344209520|ref|YP_004785697.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Lumazine_bd PF12870.2 gi|344209524|ref|YP_004785701.1| - 0.0049 16.9 0.1 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Lumazine-binding domain GEMIN8 PF15348.1 gi|344209524|ref|YP_004785701.1| - 0.025 14.6 0.5 0.043 13.8 0.4 1.3 1 0 0 1 1 1 0 Gemini of Cajal bodies-associated protein 8 Radical_SAM PF04055.16 gi|344209525|ref|YP_004785702.1| - 3.9e-07 30.4 0.1 4.2e-06 27.0 0.1 2.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|344209525|ref|YP_004785702.1| - 0.079 13.0 0.2 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|344209525|ref|YP_004785702.1| - 0.095 12.7 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|344209526|ref|YP_004785703.1| - 1.2e-09 38.5 0.0 1.2e-08 35.3 0.0 2.5 2 2 1 3 3 3 1 Radical SAM superfamily zf-C3HC4_2 PF13923.1 gi|344209526|ref|YP_004785703.1| - 0.21 11.6 0.2 0.21 11.6 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) META PF03724.11 gi|344209527|ref|YP_004785704.1| - 3.1e-05 23.7 4.9 0.011 15.5 0.4 3.0 3 1 0 3 3 3 2 META domain PEGA PF08308.6 gi|344209527|ref|YP_004785704.1| - 0.022 14.5 0.1 0.14 12.0 0.0 2.4 2 0 0 2 2 2 0 PEGA domain HTH_20 PF12840.2 gi|344209528|ref|YP_004785705.1| - 5.4e-14 51.7 0.0 9.4e-14 50.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|344209528|ref|YP_004785705.1| - 3.9e-08 32.8 0.0 1.7e-07 30.8 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|344209528|ref|YP_004785705.1| - 1.6e-07 30.5 0.1 2.7e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344209528|ref|YP_004785705.1| - 2.8e-07 30.1 0.0 4.3e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|344209528|ref|YP_004785705.1| - 0.00091 18.8 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344209528|ref|YP_004785705.1| - 0.01 15.5 0.0 0.023 14.4 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|344209528|ref|YP_004785705.1| - 0.013 15.5 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_34 PF13601.1 gi|344209528|ref|YP_004785705.1| - 0.02 14.9 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain COG5 PF10392.4 gi|344209528|ref|YP_004785705.1| - 0.031 14.2 0.0 0.092 12.7 0.0 1.6 2 0 0 2 2 2 0 Golgi transport complex subunit 5 HTH_11 PF08279.7 gi|344209528|ref|YP_004785705.1| - 0.043 13.4 0.1 0.072 12.7 0.1 1.4 1 0 0 1 1 1 0 HTH domain Phage_rep_org_N PF09681.5 gi|344209528|ref|YP_004785705.1| - 0.052 13.1 0.0 0.081 12.5 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) B-block_TFIIIC PF04182.7 gi|344209528|ref|YP_004785705.1| - 0.057 13.2 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC Sigma70_r4 PF04545.11 gi|344209528|ref|YP_004785705.1| - 0.058 12.7 0.0 0.097 12.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|344209528|ref|YP_004785705.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|344209528|ref|YP_004785705.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF1049 PF06305.6 gi|344209528|ref|YP_004785705.1| - 1 8.8 3.0 0.72 9.3 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF3149 PF11346.3 gi|344209531|ref|YP_004785708.1| - 2.6 7.6 5.2 3.6 7.2 3.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) UPF0150 PF03681.10 gi|344209533|ref|YP_004785710.1| - 2e-06 27.3 0.1 3.8e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) T2SG PF08334.6 gi|344209533|ref|YP_004785710.1| - 0.08 12.7 0.0 0.093 12.4 0.0 1.1 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein G YcfA PF07927.7 gi|344209534|ref|YP_004785711.1| - 1.2e-09 37.9 0.1 1.7e-09 37.4 0.1 1.3 1 1 0 1 1 1 1 YcfA-like protein Fic PF02661.13 gi|344209538|ref|YP_004785715.1| - 4.5e-08 33.6 0.0 1.2e-07 32.2 0.0 1.7 1 1 0 1 1 1 1 Fic/DOC family L27 PF02828.11 gi|344209538|ref|YP_004785715.1| - 0.043 13.5 0.1 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 L27 domain Dynactin PF12455.3 gi|344209539|ref|YP_004785716.1| - 0.031 13.2 0.1 0.031 13.2 0.1 1.0 1 0 0 1 1 1 0 Dynein associated protein OrfB_IS605 PF01385.14 gi|344209541|ref|YP_004785718.1| - 8.5e-37 126.7 0.0 1.4e-36 125.9 0.0 1.4 1 1 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|344209541|ref|YP_004785718.1| - 7.6e-17 60.7 2.2 1.9e-16 59.4 1.2 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain ArfGap PF01412.13 gi|344209541|ref|YP_004785718.1| - 0.047 13.4 1.0 0.14 11.9 0.7 1.8 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf GnHR_trans PF12369.3 gi|344209541|ref|YP_004785718.1| - 0.071 13.5 1.8 0.57 10.6 0.0 3.0 3 1 1 4 4 4 0 Gonadotropin hormone receptor transmembrane region Romo1 PF10247.4 gi|344209543|ref|YP_004785720.1| - 0.42 10.8 3.6 0.75 10.0 2.5 1.5 1 0 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 DUF1700 PF08006.6 gi|344209545|ref|YP_004785722.1| - 3.1 7.0 8.2 17 4.6 5.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) SseC PF04888.7 gi|344209546|ref|YP_004785723.1| - 0.0084 15.4 23.5 0.014 14.7 16.3 1.3 1 0 0 1 1 1 1 Secretion system effector C (SseC) like family U79_P34 PF03064.11 gi|344209546|ref|YP_004785723.1| - 0.02 14.4 1.1 0.028 13.9 0.8 1.1 1 0 0 1 1 1 0 HSV U79 / HCMV P34 Lon_C PF05362.8 gi|344209548|ref|YP_004785725.1| - 4e-08 32.8 0.1 6.1e-08 32.2 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|344209548|ref|YP_004785725.1| - 2.1e-05 24.0 0.0 5.1e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 Subunit ChlI of Mg-chelatase E1-E2_ATPase PF00122.15 gi|344209549|ref|YP_004785726.1| - 0.014 14.4 0.5 0.015 14.2 0.3 1.1 1 0 0 1 1 1 0 E1-E2 ATPase TrbC PF04956.8 gi|344209549|ref|YP_004785726.1| - 0.022 14.7 5.2 0.048 13.6 3.6 1.7 1 1 0 1 1 1 0 TrbC/VIRB2 family DUF4134 PF13572.1 gi|344209549|ref|YP_004785726.1| - 0.044 13.8 1.7 0.079 13.0 1.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4134) Yip1 PF04893.12 gi|344209549|ref|YP_004785726.1| - 0.065 12.7 0.3 0.079 12.4 0.2 1.2 1 0 0 1 1 1 0 Yip1 domain RskA PF10099.4 gi|344209549|ref|YP_004785726.1| - 0.88 9.2 4.2 10 5.7 0.0 2.0 1 1 1 2 2 2 0 Anti-sigma-K factor rskA MG1 PF11974.3 gi|344209550|ref|YP_004785727.1| - 0.0038 17.7 2.2 0.011 16.2 0.3 2.5 1 1 1 2 2 2 1 Alpha-2-macroglobulin MG1 domain AAA_10 PF12846.2 gi|344209551|ref|YP_004785728.1| - 7e-45 153.7 0.8 1.2e-44 152.9 0.1 1.7 2 0 0 2 2 2 1 AAA-like domain DUF87 PF01935.12 gi|344209551|ref|YP_004785728.1| - 2.8e-06 27.3 0.0 2.8e-06 27.3 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|344209551|ref|YP_004785728.1| - 0.00046 20.2 1.2 0.023 14.6 0.0 3.4 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|344209551|ref|YP_004785728.1| - 0.001 19.1 1.0 0.47 10.6 0.0 3.1 3 0 0 3 3 3 1 AAA domain DEAD PF00270.24 gi|344209551|ref|YP_004785728.1| - 0.0067 15.9 0.0 1.9 7.9 0.0 2.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_29 PF13555.1 gi|344209551|ref|YP_004785728.1| - 0.0095 15.4 0.0 0.026 14.0 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|344209551|ref|YP_004785728.1| - 0.024 14.8 0.0 3.7 7.7 0.0 2.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|344209551|ref|YP_004785728.1| - 0.027 13.9 0.0 0.071 12.5 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|344209551|ref|YP_004785728.1| - 0.031 13.4 0.0 0.48 9.5 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|344209551|ref|YP_004785728.1| - 0.039 13.5 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain PIN PF01850.16 gi|344209553|ref|YP_004785730.1| - 2.6e-10 40.6 0.0 3e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF2263 PF10021.4 gi|344209553|ref|YP_004785730.1| - 0.021 14.7 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2263) EST1_DNA_bind PF10373.4 gi|344209553|ref|YP_004785730.1| - 0.049 12.8 0.0 0.051 12.7 0.0 1.1 1 0 0 1 1 1 0 Est1 DNA/RNA binding domain DUF217 PF02697.9 gi|344209554|ref|YP_004785731.1| - 1e-08 35.3 1.6 1.5e-08 34.7 1.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 Cupin_4 PF08007.7 gi|344209554|ref|YP_004785731.1| - 0.038 13.2 0.3 0.043 13.0 0.2 1.1 1 0 0 1 1 1 0 Cupin superfamily protein Tropomyosin_1 PF12718.2 gi|344209554|ref|YP_004785731.1| - 0.047 13.5 1.0 0.06 13.1 0.7 1.1 1 0 0 1 1 1 0 Tropomyosin like RHH_1 PF01402.16 gi|344209554|ref|YP_004785731.1| - 0.88 9.5 5.5 0.55 10.2 1.1 2.6 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family Nucleo_P87 PF07267.6 gi|344209558|ref|YP_004785735.1| - 0.088 11.4 0.9 0.1 11.2 0.6 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus capsid protein P87 Ebola_NP PF05505.7 gi|344209558|ref|YP_004785735.1| - 0.15 10.0 0.4 0.19 9.7 0.3 1.1 1 0 0 1 1 1 0 Ebola nucleoprotein tRNA_anti-codon PF01336.20 gi|344209559|ref|YP_004785736.1| - 0.0081 15.9 0.1 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain TrmB PF01978.14 gi|344209560|ref|YP_004785737.1| - 9e-09 34.9 0.7 2.6e-08 33.4 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|344209560|ref|YP_004785737.1| - 4.5e-06 26.3 0.4 9.9e-06 25.2 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209560|ref|YP_004785737.1| - 2.9e-05 23.3 0.0 0.0024 17.2 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding F-112 PF09645.5 gi|344209560|ref|YP_004785737.1| - 0.0007 19.4 0.0 0.49 10.3 0.0 2.2 2 0 0 2 2 2 2 F-112 protein MarR_2 PF12802.2 gi|344209560|ref|YP_004785737.1| - 0.0023 17.5 0.7 0.011 15.3 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|344209560|ref|YP_004785737.1| - 0.0023 17.5 0.0 0.0086 15.7 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|344209560|ref|YP_004785737.1| - 0.0062 16.0 1.0 0.027 14.0 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|344209560|ref|YP_004785737.1| - 0.074 13.1 0.1 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor Chorion_2 PF03964.10 gi|344209561|ref|YP_004785738.1| - 0.15 12.6 0.4 0.21 12.1 0.3 1.3 1 0 0 1 1 1 0 Chorion family 2 Nuc_deoxyrib_tr PF05014.10 gi|344209561|ref|YP_004785738.1| - 0.15 11.9 0.3 0.46 10.3 0.2 1.9 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase HTH_11 PF08279.7 gi|344209563|ref|YP_004785740.1| - 4.7e-07 29.3 0.0 6.5e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_41 PF14502.1 gi|344209563|ref|YP_004785740.1| - 0.028 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|344209563|ref|YP_004785740.1| - 0.03 14.1 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|344209563|ref|YP_004785740.1| - 0.042 13.2 0.0 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_CodY PF08222.6 gi|344209563|ref|YP_004785740.1| - 0.077 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_23 PF13384.1 gi|344209563|ref|YP_004785740.1| - 0.08 12.6 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|344209563|ref|YP_004785740.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain Glyoxalase PF00903.20 gi|344209564|ref|YP_004785741.1| - 8.5e-07 28.9 0.3 1.3e-06 28.4 0.2 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|344209564|ref|YP_004785741.1| - 8.1e-05 23.1 0.1 0.00011 22.7 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|344209564|ref|YP_004785741.1| - 0.0017 18.2 0.8 0.4 10.5 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|344209564|ref|YP_004785741.1| - 0.0071 16.3 1.0 0.016 15.1 0.7 1.6 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DIRP PF06584.8 gi|344209565|ref|YP_004785742.1| - 0.064 13.1 0.5 0.1 12.4 0.4 1.3 1 0 0 1 1 1 0 DIRP PIN PF01850.16 gi|344209566|ref|YP_004785743.1| - 1.5e-16 60.8 0.6 1.7e-16 60.6 0.4 1.0 1 0 0 1 1 1 1 PIN domain TrwB_AAD_bind PF10412.4 gi|344209568|ref|YP_004785745.1| - 3.4e-18 65.4 0.0 4.7e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|344209568|ref|YP_004785745.1| - 1.6e-13 50.6 1.0 2.2e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG AAA_10 PF12846.2 gi|344209568|ref|YP_004785745.1| - 2.1e-05 24.1 0.0 3.4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain T4SS-DNA_transf PF02534.9 gi|344209568|ref|YP_004785745.1| - 0.00065 18.4 0.0 0.00095 17.8 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer BRK PF07533.11 gi|344209569|ref|YP_004785746.1| - 0.058 12.8 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 BRK domain HAMP PF00672.20 gi|344209571|ref|YP_004785748.1| - 0.27 11.4 0.0 0.27 11.4 0.0 2.6 3 0 0 3 3 3 0 HAMP domain SbcCD_C PF13558.1 gi|344209572|ref|YP_004785749.1| - 3.5e-09 36.4 0.0 8.6e-09 35.2 0.0 1.7 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_21 PF13304.1 gi|344209572|ref|YP_004785749.1| - 1.9e-06 28.0 2.1 1.9e-06 28.0 1.5 2.0 2 0 0 2 2 2 1 AAA domain Spc7 PF08317.6 gi|344209572|ref|YP_004785749.1| - 7.1e-06 24.9 14.6 7.1e-06 24.9 10.1 2.6 2 1 0 2 2 2 1 Spc7 kinetochore protein Tropomyosin_1 PF12718.2 gi|344209572|ref|YP_004785749.1| - 0.00014 21.7 21.5 0.00014 21.7 14.9 3.4 2 1 0 2 2 1 1 Tropomyosin like CENP-F_leu_zip PF10473.4 gi|344209572|ref|YP_004785749.1| - 0.00052 19.8 43.8 0.069 13.0 8.7 3.7 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2326 PF10088.4 gi|344209572|ref|YP_004785749.1| - 0.0066 16.0 0.1 0.0066 16.0 0.1 2.5 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2326) AAA_23 PF13476.1 gi|344209572|ref|YP_004785749.1| - 0.0081 16.5 50.9 1.5e+04 -10.5 35.2 3.8 1 1 0 1 1 0 0 AAA domain UPF0547 PF10571.4 gi|344209572|ref|YP_004785749.1| - 0.0083 15.8 2.8 0.018 14.6 1.9 1.6 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Seryl_tRNA_N PF02403.17 gi|344209572|ref|YP_004785749.1| - 0.013 15.4 29.5 0.027 14.4 0.6 4.5 3 1 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain zf-Di19 PF05605.7 gi|344209572|ref|YP_004785749.1| - 0.044 13.9 0.3 11 6.2 0.1 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding AAA_29 PF13555.1 gi|344209572|ref|YP_004785749.1| - 0.067 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Prefoldin_2 PF01920.15 gi|344209572|ref|YP_004785749.1| - 0.097 12.4 41.7 0.081 12.6 1.0 5.4 4 2 2 6 6 6 0 Prefoldin subunit IBV_3A PF03617.8 gi|344209572|ref|YP_004785749.1| - 0.22 11.3 0.6 0.49 10.1 0.4 1.5 1 0 0 1 1 1 0 IBV 3A protein MCPsignal PF00015.16 gi|344209572|ref|YP_004785749.1| - 0.33 10.4 10.4 1.8 8.0 5.2 2.8 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3584 PF12128.3 gi|344209572|ref|YP_004785749.1| - 0.35 8.1 37.7 5.4 4.1 26.1 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) L31 PF09784.4 gi|344209572|ref|YP_004785749.1| - 0.65 10.1 0.0 0.65 10.1 0.0 3.0 2 1 0 3 3 3 0 Mitochondrial ribosomal protein L31 DUF342 PF03961.8 gi|344209572|ref|YP_004785749.1| - 0.66 8.3 25.2 0.95 7.8 7.6 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF342) BLOC1_2 PF10046.4 gi|344209572|ref|YP_004785749.1| - 0.67 10.1 31.4 1.1 9.4 0.7 4.4 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|344209572|ref|YP_004785749.1| - 0.74 8.7 37.2 1.5 7.7 10.3 2.8 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 CENP-R PF06729.7 gi|344209572|ref|YP_004785749.1| - 1.1 8.9 7.2 1.5 8.5 2.4 2.6 1 1 1 2 2 2 0 Kinetochore component, CENP-R Reo_sigmaC PF04582.7 gi|344209572|ref|YP_004785749.1| - 1.5 7.9 9.7 0.74 8.9 0.6 2.8 1 1 2 3 3 3 0 Reovirus sigma C capsid protein DivIC PF04977.10 gi|344209572|ref|YP_004785749.1| - 1.8 8.0 36.2 1 8.9 2.2 5.1 3 1 1 4 4 4 0 Septum formation initiator zf-ribbon_3 PF13248.1 gi|344209572|ref|YP_004785749.1| - 1.9 7.8 3.9 6.5 6.0 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TPR_MLP1_2 PF07926.7 gi|344209572|ref|YP_004785749.1| - 2 8.1 37.7 0.13 12.0 0.9 4.2 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein WXG100 PF06013.7 gi|344209572|ref|YP_004785749.1| - 2.7 8.0 14.4 3 7.8 0.6 4.5 4 0 0 4 4 4 0 Proteins of 100 residues with WXG Corona_S2 PF01601.11 gi|344209572|ref|YP_004785749.1| - 2.7 5.9 10.5 0.49 8.4 0.2 3.1 1 1 2 4 4 4 0 Coronavirus S2 glycoprotein DUF1664 PF07889.7 gi|344209572|ref|YP_004785749.1| - 3.3 7.5 27.6 0.65 9.7 0.9 4.4 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) DUF869 PF05911.6 gi|344209572|ref|YP_004785749.1| - 3.7 5.6 33.3 9.6 4.2 23.1 1.7 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) NPV_P10 PF05531.7 gi|344209572|ref|YP_004785749.1| - 4 7.7 20.0 1.5 9.1 0.7 4.6 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein TMF_DNA_bd PF12329.3 gi|344209572|ref|YP_004785749.1| - 4.6 7.1 38.7 0.95 9.3 5.5 4.6 3 1 0 4 4 4 0 TATA element modulatory factor 1 DNA binding HTH_20 PF12840.2 gi|344209575|ref|YP_004785752.1| - 4.2e-05 23.2 0.0 6.5e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209575|ref|YP_004785752.1| - 0.00097 18.4 0.1 0.0016 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|344209575|ref|YP_004785752.1| - 0.029 14.0 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_1 PF00126.22 gi|344209575|ref|YP_004785752.1| - 0.063 13.0 0.2 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.1 gi|344209575|ref|YP_004785752.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF217 PF02697.9 gi|344209576|ref|YP_004785753.1| - 4.2e-07 30.1 3.3 5.2e-07 29.8 2.3 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 SPT6_acidic PF14632.1 gi|344209576|ref|YP_004785753.1| - 6.8 6.9 13.6 0.88 9.7 4.1 2.0 1 1 1 2 2 2 0 Acidic N-terminal SPT6 PIN PF01850.16 gi|344209577|ref|YP_004785754.1| - 3.5e-11 43.5 0.0 4.3e-11 43.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain TPR_21 PF09976.4 gi|344209577|ref|YP_004785754.1| - 0.12 12.3 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Tetratricopeptide repeat PCNA_N PF00705.13 gi|344209579|ref|YP_004785756.1| - 0.0015 18.0 0.0 0.0032 16.9 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain SprT-like PF10263.4 gi|344209581|ref|YP_004785758.1| - 0.0066 16.1 0.3 0.24 11.0 0.0 2.2 2 0 0 2 2 2 2 SprT-like family Peptidase_MA_2 PF13485.1 gi|344209581|ref|YP_004785758.1| - 0.056 13.4 0.4 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Peptidase MA superfamily Gemini_AC4_5 PF04807.7 gi|344209582|ref|YP_004785759.1| - 0.081 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Geminivirus AC4/5 conserved region PQQ_3 PF13570.1 gi|344209583|ref|YP_004785760.1| - 2.7e-33 113.2 20.1 6.8e-08 32.5 0.1 8.0 7 1 1 8 8 8 6 PQQ-like domain PQQ_2 PF13360.1 gi|344209583|ref|YP_004785760.1| - 4.1e-30 105.0 13.1 7.8e-23 81.1 1.4 3.3 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|344209583|ref|YP_004785760.1| - 6.6e-18 63.2 8.4 1.7e-05 24.0 0.0 6.0 6 0 0 6 6 6 3 PQQ enzyme repeat Alginate_lyase PF05426.7 gi|344209584|ref|YP_004785761.1| - 0.12 11.6 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 Alginate lyase ATS PF15445.1 gi|344209586|ref|YP_004785763.1| - 0.11 11.5 0.2 0.11 11.5 0.1 1.7 2 0 0 2 2 2 0 acidic terminal segments, variant surface antigen of PfEMP1 Ion_trans_2 PF07885.11 gi|344209588|ref|YP_004785765.1| - 0.01 15.5 1.8 0.011 15.3 1.2 1.0 1 0 0 1 1 1 0 Ion channel NPV_P10 PF05531.7 gi|344209589|ref|YP_004785766.1| - 0.017 15.3 0.4 0.025 14.8 0.3 1.4 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF2065 PF09838.4 gi|344209594|ref|YP_004785771.1| - 0.0047 16.6 0.0 0.98 9.1 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2065) SWIM PF04434.12 gi|344209595|ref|YP_004785772.1| - 0.0022 17.4 5.3 0.0023 17.3 0.1 2.6 2 1 0 2 2 2 1 SWIM zinc finger TFIIB PF00382.14 gi|344209596|ref|YP_004785773.1| - 1.9e-18 66.0 2.6 1.3e-10 40.9 1.3 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344209596|ref|YP_004785773.1| - 9.1e-10 37.7 3.5 9.1e-10 37.7 2.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|344209596|ref|YP_004785773.1| - 0.0019 17.8 0.4 0.0042 16.7 0.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HTH_23 PF13384.1 gi|344209596|ref|YP_004785773.1| - 0.014 14.9 0.3 1.8 8.3 0.0 3.4 3 0 0 3 3 3 0 Homeodomain-like domain zinc-ribbons_6 PF07191.7 gi|344209596|ref|YP_004785773.1| - 0.026 14.3 2.6 0.027 14.2 0.6 1.9 2 0 0 2 2 2 0 zinc-ribbons XRCC4 PF06632.7 gi|344209596|ref|YP_004785773.1| - 0.043 12.6 0.9 0.055 12.3 0.7 1.2 1 0 0 1 1 1 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 DZR PF12773.2 gi|344209596|ref|YP_004785773.1| - 0.05 13.4 1.3 0.11 12.3 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon Cyclin_C PF02984.14 gi|344209596|ref|YP_004785773.1| - 0.09 12.7 0.4 0.42 10.5 0.3 1.9 2 0 0 2 2 2 0 Cyclin, C-terminal domain zf-ribbon_3 PF13248.1 gi|344209596|ref|YP_004785773.1| - 0.12 11.6 3.0 0.25 10.5 2.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|344209596|ref|YP_004785773.1| - 1.8 8.5 5.3 3.4 7.6 0.4 2.6 1 1 2 3 3 3 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|344209596|ref|YP_004785773.1| - 8.1 6.5 7.3 3.1 7.8 0.7 2.7 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 RHH_1 PF01402.16 gi|344209598|ref|YP_004785775.1| - 0.045 13.6 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Plasmid_stabil PF05016.9 gi|344209599|ref|YP_004785776.1| - 5.4e-05 23.4 0.0 7.2e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|344209599|ref|YP_004785776.1| - 0.079 12.9 0.0 0.096 12.7 0.0 1.2 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) GPI-anchored PF10342.4 gi|344209602|ref|YP_004785779.1| - 0.13 12.7 0.2 0.39 11.2 0.2 1.7 1 1 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family LPAM_1 PF08139.7 gi|344209602|ref|YP_004785779.1| - 0.36 11.1 2.3 0.63 10.3 1.6 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site N6_Mtase PF02384.11 gi|344209603|ref|YP_004785780.1| - 3.7e-11 42.6 0.0 5.1e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|344209603|ref|YP_004785780.1| - 3.9e-08 33.3 0.0 8.2e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344209603|ref|YP_004785780.1| - 0.0072 16.8 0.0 0.015 15.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|344209603|ref|YP_004785780.1| - 0.032 13.8 0.0 0.069 12.7 0.0 1.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.13 gi|344209603|ref|YP_004785780.1| - 0.063 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA methylase FANCL_C PF11793.3 gi|344209605|ref|YP_004785782.1| - 0.0021 17.9 0.6 0.33 10.9 0.1 2.1 1 1 1 2 2 2 2 FANCL C-terminal domain Terminase_GpA PF05876.7 gi|344209605|ref|YP_004785782.1| - 0.016 13.5 0.4 0.016 13.5 0.3 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-Di19 PF05605.7 gi|344209605|ref|YP_004785782.1| - 0.033 14.3 0.1 0.045 13.8 0.1 1.3 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_5 PF13719.1 gi|344209605|ref|YP_004785782.1| - 0.065 12.8 0.2 3.1 7.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|344209605|ref|YP_004785782.1| - 0.072 12.7 0.1 8.6 6.1 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Opy2 PF09463.5 gi|344209605|ref|YP_004785782.1| - 0.072 13.1 1.2 4.4 7.4 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein PADR1 PF08063.7 gi|344209605|ref|YP_004785782.1| - 0.15 11.4 0.4 10 5.6 0.1 2.1 2 0 0 2 2 2 0 PADR1 (NUC008) domain DZR PF12773.2 gi|344209605|ref|YP_004785782.1| - 0.2 11.4 1.7 1.8 8.4 1.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|344209605|ref|YP_004785782.1| - 0.26 11.0 2.1 4.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger UPF0547 PF10571.4 gi|344209605|ref|YP_004785782.1| - 1.2 8.8 8.1 1.9 8.2 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3652 PF12372.3 gi|344209607|ref|YP_004785784.1| - 0.12 12.0 0.2 5.5 6.6 0.2 2.6 2 0 0 2 2 2 0 Huntingtin protein region AAA_22 PF13401.1 gi|344209608|ref|YP_004785785.1| - 3.7e-14 52.9 0.5 6.3e-14 52.2 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|344209608|ref|YP_004785785.1| - 1.5e-13 51.1 0.2 6.3e-13 49.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|344209608|ref|YP_004785785.1| - 1.2e-06 28.6 0.2 5.6e-06 26.5 0.2 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|344209608|ref|YP_004785785.1| - 1.6e-05 24.0 0.1 4.2e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|344209608|ref|YP_004785785.1| - 2.3e-05 23.9 0.0 0.00024 20.6 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|344209608|ref|YP_004785785.1| - 9.1e-05 22.2 0.0 0.00013 21.7 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase KAP_NTPase PF07693.9 gi|344209608|ref|YP_004785785.1| - 0.0003 19.8 0.2 0.0039 16.2 0.0 1.9 1 1 1 2 2 2 1 KAP family P-loop domain AAA_5 PF07728.9 gi|344209608|ref|YP_004785785.1| - 0.00097 18.8 0.3 0.0038 16.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|344209608|ref|YP_004785785.1| - 0.0013 18.4 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|344209608|ref|YP_004785785.1| - 0.0023 17.9 0.0 0.012 15.7 0.0 1.9 1 1 1 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|344209608|ref|YP_004785785.1| - 0.0028 17.5 0.6 0.0043 16.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RNA_helicase PF00910.17 gi|344209608|ref|YP_004785785.1| - 0.0047 17.0 0.1 0.0094 16.1 0.0 1.6 1 1 0 1 1 1 1 RNA helicase NB-ARC PF00931.17 gi|344209608|ref|YP_004785785.1| - 0.0054 15.6 0.0 0.0074 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.24 gi|344209608|ref|YP_004785785.1| - 0.02 14.4 3.5 0.59 9.6 0.6 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase PhoH PF02562.11 gi|344209608|ref|YP_004785785.1| - 0.023 13.9 0.1 4.4 6.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DUF87 PF01935.12 gi|344209608|ref|YP_004785785.1| - 0.044 13.5 0.8 0.1 12.3 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|344209608|ref|YP_004785785.1| - 0.047 13.2 0.1 0.068 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|344209608|ref|YP_004785785.1| - 0.053 12.4 0.0 0.1 11.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|344209608|ref|YP_004785785.1| - 0.055 13.1 0.2 0.11 12.1 0.1 1.6 1 1 0 1 1 1 0 NTPase AAA_32 PF13654.1 gi|344209608|ref|YP_004785785.1| - 0.062 11.9 0.6 0.29 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|344209608|ref|YP_004785785.1| - 0.062 12.4 0.0 0.15 11.2 0.0 1.6 1 1 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.9 gi|344209608|ref|YP_004785785.1| - 0.094 11.6 0.0 0.19 10.6 0.0 1.5 1 1 0 1 1 1 0 PIF1-like helicase Zot PF05707.7 gi|344209608|ref|YP_004785785.1| - 0.094 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|344209608|ref|YP_004785785.1| - 0.12 11.8 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|344209608|ref|YP_004785785.1| - 0.16 10.9 2.2 0.14 11.0 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) PadR PF03551.9 gi|344209609|ref|YP_004785786.1| - 3.8e-17 61.8 0.3 4.6e-17 61.5 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|344209609|ref|YP_004785786.1| - 0.00014 22.1 0.0 0.00017 21.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|344209609|ref|YP_004785786.1| - 0.0023 17.7 0.1 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|344209609|ref|YP_004785786.1| - 0.0028 17.2 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|344209609|ref|YP_004785786.1| - 0.02 14.8 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|344209609|ref|YP_004785786.1| - 0.022 14.4 0.1 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344209609|ref|YP_004785786.1| - 0.051 13.2 0.6 0.67 9.6 0.2 2.5 2 1 0 2 2 2 0 MarR family DUF4364 PF14277.1 gi|344209609|ref|YP_004785786.1| - 0.054 13.1 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) TACC PF05010.9 gi|344209610|ref|YP_004785787.1| - 0.019 14.7 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) N6_Mtase PF02384.11 gi|344209611|ref|YP_004785788.1| - 9.8e-13 47.8 0.0 1.4e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|344209611|ref|YP_004785788.1| - 5.5e-08 32.8 0.0 1.1e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344209611|ref|YP_004785788.1| - 0.00078 19.9 0.0 0.0016 18.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|344209611|ref|YP_004785788.1| - 0.0086 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|344209611|ref|YP_004785788.1| - 0.064 12.8 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Zn-ribbon_8 PF09723.5 gi|344209612|ref|YP_004785789.1| - 0.012 15.5 1.6 0.97 9.4 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|344209612|ref|YP_004785789.1| - 0.017 14.7 2.4 0.031 13.8 1.7 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|344209612|ref|YP_004785789.1| - 0.017 15.3 1.3 0.021 15.1 0.9 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ima1_N PF09779.4 gi|344209612|ref|YP_004785789.1| - 0.022 15.2 0.1 0.022 15.2 0.1 1.1 1 0 0 1 1 1 0 Ima1 N-terminal domain zf-ribbon_3 PF13248.1 gi|344209612|ref|YP_004785789.1| - 0.039 13.1 1.4 0.3 10.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|344209612|ref|YP_004785789.1| - 0.039 13.6 2.5 0.073 12.7 1.7 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|344209612|ref|YP_004785789.1| - 0.11 12.2 1.0 4.1 7.2 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2296 PF10058.4 gi|344209612|ref|YP_004785789.1| - 0.13 11.9 0.5 0.24 11.1 0.3 1.5 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_3 PF14369.1 gi|344209612|ref|YP_004785789.1| - 0.14 12.2 4.9 0.37 10.8 0.6 2.1 1 1 1 2 2 2 0 zinc-finger zf-HYPF PF07503.7 gi|344209612|ref|YP_004785789.1| - 0.21 11.0 3.3 1.1 8.7 0.3 2.2 2 0 0 2 2 2 0 HypF finger Trm112p PF03966.11 gi|344209612|ref|YP_004785789.1| - 0.23 11.8 1.8 2.4 8.5 0.1 2.1 1 1 1 2 2 2 0 Trm112p-like protein DZR PF12773.2 gi|344209612|ref|YP_004785789.1| - 0.23 11.2 2.6 0.57 10.0 1.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|344209612|ref|YP_004785789.1| - 0.28 10.7 2.0 3.6 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|344209612|ref|YP_004785789.1| - 0.52 10.2 5.6 3.4 7.7 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|344209612|ref|YP_004785789.1| - 0.72 9.7 3.6 1.5 8.6 2.5 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|344209612|ref|YP_004785789.1| - 0.79 9.7 3.3 1.1 9.2 0.2 2.2 2 1 0 2 2 2 0 C2H2-type zinc finger RRN7 PF11781.3 gi|344209612|ref|YP_004785789.1| - 2 7.9 5.2 5.1 6.6 0.8 2.1 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TFIIB PF00382.14 gi|344209616|ref|YP_004785793.1| - 4.8e-21 74.3 2.6 1.5e-11 43.8 1.0 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|344209616|ref|YP_004785793.1| - 4.5e-08 32.2 2.5 4.5e-08 32.2 1.8 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|344209616|ref|YP_004785793.1| - 0.00056 19.5 0.6 0.0015 18.1 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cyclin_C PF02984.14 gi|344209616|ref|YP_004785793.1| - 0.0096 15.8 0.2 0.44 10.4 0.2 2.4 2 0 0 2 2 2 1 Cyclin, C-terminal domain zinc-ribbons_6 PF07191.7 gi|344209616|ref|YP_004785793.1| - 0.028 14.1 1.8 0.04 13.6 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbons DZR PF12773.2 gi|344209616|ref|YP_004785793.1| - 0.058 13.2 0.8 0.12 12.2 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|344209616|ref|YP_004785793.1| - 0.43 9.8 3.4 0.95 8.7 2.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain SWIM PF04434.12 gi|344209617|ref|YP_004785794.1| - 0.0075 15.7 0.1 0.0075 15.7 0.1 2.5 2 1 0 2 2 2 1 SWIM zinc finger Methyltransf_13 PF08421.6 gi|344209618|ref|YP_004785795.1| - 0.0014 18.0 0.1 0.0017 17.7 0.1 1.2 1 0 0 1 1 1 1 Putative zinc binding domain DUF1610 PF07754.6 gi|344209618|ref|YP_004785795.1| - 0.14 12.2 0.4 0.33 11.0 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) DUF3366 PF11846.3 gi|344209619|ref|YP_004785796.1| - 0.18 11.6 1.4 0.28 11.0 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) RhodobacterPufX PF11511.3 gi|344209619|ref|YP_004785796.1| - 1.1 8.6 3.8 1.5 8.2 0.1 2.3 1 1 1 2 2 2 0 Intrinsic membrane protein PufX DUF2065 PF09838.4 gi|344209620|ref|YP_004785797.1| - 0.0026 17.4 0.0 1.6 8.4 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2065) FYVE PF01363.16 gi|344209626|ref|YP_004785803.1| - 6.1 6.8 12.6 5.6 6.9 2.2 3.0 1 1 1 2 2 2 0 FYVE zinc finger Caps_synth_CapC PF14102.1 gi|344209632|ref|YP_004785809.1| - 2.4e-13 50.2 33.3 1.5e-09 38.0 8.9 3.1 3 1 1 4 4 4 2 Capsule biosynthesis CapC Mur_ligase_M PF08245.7 gi|344209633|ref|YP_004785810.1| - 4e-07 30.2 0.0 6.7e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Mur ligase middle domain HTH_IclR PF09339.5 gi|344209633|ref|YP_004785810.1| - 0.12 12.0 0.3 0.67 9.5 0.0 2.4 3 0 0 3 3 3 0 IclR helix-turn-helix domain PGA_cap PF09587.5 gi|344209634|ref|YP_004785811.1| - 6.6e-65 218.9 0.4 8.9e-65 218.5 0.2 1.2 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap CarboxypepD_reg PF13620.1 gi|344209634|ref|YP_004785811.1| - 1.3e-11 44.3 0.2 5.8e-11 42.3 0.1 2.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain TAT_signal PF10518.4 gi|344209634|ref|YP_004785811.1| - 0.054 13.5 0.1 0.054 13.5 0.0 4.5 5 0 0 5 5 5 0 TAT (twin-arginine translocation) pathway signal sequence DUF4198 PF10670.4 gi|344209634|ref|YP_004785811.1| - 0.066 13.1 0.4 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4198) Fer2_4 PF13510.1 gi|344209634|ref|YP_004785811.1| - 0.068 12.9 1.9 0.092 12.5 0.0 2.3 3 0 0 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain LPAM_1 PF08139.7 gi|344209634|ref|YP_004785811.1| - 0.49 10.6 2.0 1.1 9.5 1.4 1.6 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DZR PF12773.2 gi|344209635|ref|YP_004785812.1| - 0.041 13.6 0.3 0.073 12.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HNH PF01844.18 gi|344209635|ref|YP_004785812.1| - 0.051 13.4 0.1 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 HNH endonuclease zf-FCS PF06467.9 gi|344209635|ref|YP_004785812.1| - 0.067 12.8 0.2 2.5 7.7 0.0 2.3 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif SprT-like PF10263.4 gi|344209637|ref|YP_004785814.1| - 0.0051 16.4 0.7 0.24 11.0 0.0 2.2 2 0 0 2 2 2 2 SprT-like family DUF955 PF06114.8 gi|344209637|ref|YP_004785814.1| - 0.012 15.2 0.2 0.023 14.4 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_MA_2 PF13485.1 gi|344209637|ref|YP_004785814.1| - 0.081 12.9 0.1 0.2 11.7 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily IncA PF04156.9 gi|344209637|ref|YP_004785814.1| - 0.47 10.0 3.1 0.92 9.0 2.2 1.4 1 0 0 1 1 1 0 IncA protein PCNA_N PF00705.13 gi|344209640|ref|YP_004785817.1| - 0.013 14.9 0.0 0.03 13.8 0.0 1.6 2 0 0 2 2 2 0 Proliferating cell nuclear antigen, N-terminal domain CRISPR_Cas2 PF09827.4 gi|344209643|ref|YP_004785820.1| - 4.1e-14 52.4 0.0 4.6e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|344209644|ref|YP_004785821.1| - 3.4e-82 275.7 0.0 4e-82 275.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas_Cas4 PF01930.12 gi|344209645|ref|YP_004785822.1| - 1.4e-45 155.0 0.0 1.6e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|344209645|ref|YP_004785822.1| - 2.1e-05 24.0 0.1 2.3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DEAD PF00270.24 gi|344209646|ref|YP_004785823.1| - 2.7e-06 26.9 0.0 6.8e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|344209646|ref|YP_004785823.1| - 0.0015 18.4 0.0 0.0038 17.0 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Rep_fac-A_C PF08646.5 gi|344209646|ref|YP_004785823.1| - 0.0038 16.9 0.0 0.0079 15.9 0.0 1.4 1 0 0 1 1 1 1 Replication factor-A C terminal domain Cas_Cas5d PF09704.5 gi|344209647|ref|YP_004785824.1| - 2.9e-08 33.6 0.0 3.1e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DUF694 PF05107.7 gi|344209648|ref|YP_004785825.1| - 1.4e-62 211.3 0.0 1.6e-62 211.2 0.0 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_TM1802 PF09484.5 gi|344209649|ref|YP_004785826.1| - 2.6e-11 42.7 0.0 1.8e-05 23.4 0.0 2.5 3 0 0 3 3 3 2 CRISPR-associated protein TM1802 (cas_TM1802) Cas_Cas6 PF01881.11 gi|344209650|ref|YP_004785827.1| - 4.1e-08 33.6 0.0 1.1e-07 32.2 0.0 1.7 1 1 0 1 1 1 1 CRISPR associated protein Cas6 Phage_int_SAM_1 PF02899.12 gi|344209651|ref|YP_004785828.1| - 0.00032 20.7 4.0 0.0013 18.8 0.1 3.3 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain DUF1030 PF06270.6 gi|344209652|ref|YP_004785829.1| - 0.09 12.3 0.1 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1030) HEPN PF05168.9 gi|344209652|ref|YP_004785829.1| - 0.12 12.2 0.1 0.22 11.4 0.1 1.6 1 1 0 1 1 1 0 HEPN domain NTP_transf_2 PF01909.18 gi|344209653|ref|YP_004785830.1| - 5e-09 36.3 0.9 1.6e-08 34.7 0.2 2.0 2 0 0 2 2 2 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|344209653|ref|YP_004785830.1| - 2.6e-06 26.9 0.0 5.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|344209653|ref|YP_004785830.1| - 0.00086 18.9 0.1 0.0027 17.3 0.0 1.8 2 0 0 2 2 2 1 HTH domain GntR PF00392.16 gi|344209653|ref|YP_004785830.1| - 0.0012 18.2 0.0 0.0031 16.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|344209653|ref|YP_004785830.1| - 0.046 13.1 0.0 0.088 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Adenyl_cycl_N PF12633.2 gi|344209653|ref|YP_004785830.1| - 0.12 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain DEP PF00610.16 gi|344209654|ref|YP_004785831.1| - 0.1 12.3 0.1 0.2 11.4 0.0 1.4 2 0 0 2 2 2 0 Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) AAA_16 PF13191.1 gi|344209656|ref|YP_004785833.1| - 1.4e-14 54.5 0.3 5.9e-14 52.4 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|344209656|ref|YP_004785833.1| - 1.4e-12 47.9 0.0 2.9e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|344209656|ref|YP_004785833.1| - 6.8e-09 35.3 0.0 1.9e-08 33.8 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|344209656|ref|YP_004785833.1| - 6.9e-08 32.6 0.0 1.5e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|344209656|ref|YP_004785833.1| - 2.3e-06 26.7 0.0 5.2e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|344209656|ref|YP_004785833.1| - 4.9e-06 26.4 0.0 1.5e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|344209656|ref|YP_004785833.1| - 8.5e-05 22.0 0.0 0.00092 18.6 0.0 2.4 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|344209656|ref|YP_004785833.1| - 0.0014 18.3 0.0 0.0041 16.7 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.21 gi|344209656|ref|YP_004785833.1| - 0.0033 16.9 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|344209656|ref|YP_004785833.1| - 0.0076 17.0 3.2 0.62 10.8 2.2 3.0 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|344209656|ref|YP_004785833.1| - 0.0078 16.3 0.0 0.021 14.9 0.0 1.8 1 0 0 1 1 1 1 RNA helicase AAA_29 PF13555.1 gi|344209656|ref|YP_004785833.1| - 0.0099 15.3 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|344209656|ref|YP_004785833.1| - 0.017 15.0 0.5 0.58 10.0 0.0 3.2 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|344209656|ref|YP_004785833.1| - 0.018 14.4 0.1 0.1 12.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|344209656|ref|YP_004785833.1| - 0.019 14.4 0.6 0.064 12.6 0.0 2.0 2 1 0 2 2 2 0 AAA-like domain ABC_tran PF00005.22 gi|344209656|ref|YP_004785833.1| - 0.029 14.6 0.2 0.076 13.3 0.1 2.0 1 1 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|344209656|ref|YP_004785833.1| - 0.041 14.2 0.8 0.12 12.6 0.6 2.1 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|344209656|ref|YP_004785833.1| - 0.057 12.6 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_PrkA PF08298.6 gi|344209656|ref|YP_004785833.1| - 0.057 12.0 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_24 PF13479.1 gi|344209656|ref|YP_004785833.1| - 0.057 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|344209656|ref|YP_004785833.1| - 0.057 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|344209656|ref|YP_004785833.1| - 0.065 13.1 0.0 0.31 10.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|344209656|ref|YP_004785833.1| - 0.071 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|344209656|ref|YP_004785833.1| - 0.084 12.8 0.2 0.38 10.7 0.0 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|344209656|ref|YP_004785833.1| - 0.092 12.4 0.1 0.37 10.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|344209656|ref|YP_004785833.1| - 0.093 12.1 0.0 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|344209662|ref|YP_004785839.1| - 2.7e-38 132.1 0.6 9.4e-37 127.0 0.0 3.1 4 0 0 4 4 4 1 AAA-like domain AAA_22 PF13401.1 gi|344209662|ref|YP_004785839.1| - 9.4e-05 22.5 0.2 0.019 15.1 0.1 2.7 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|344209662|ref|YP_004785839.1| - 0.00018 21.0 0.2 0.0043 16.5 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) CagE_TrbE_VirB PF03135.9 gi|344209662|ref|YP_004785839.1| - 0.00086 19.1 0.0 0.0023 17.7 0.0 1.6 1 0 0 1 1 1 1 CagE, TrbE, VirB family, component of type IV transporter system DEAD PF00270.24 gi|344209662|ref|YP_004785839.1| - 0.015 14.8 1.8 0.081 12.4 1.2 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase ArgK PF03308.11 gi|344209662|ref|YP_004785839.1| - 0.06 12.1 0.0 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein DUF1778 PF08681.6 gi|344209663|ref|YP_004785840.1| - 0.0045 16.7 0.5 0.0045 16.7 0.4 1.8 2 1 1 3 3 3 1 Protein of unknown function (DUF1778) RHH_1 PF01402.16 gi|344209663|ref|YP_004785840.1| - 0.0051 16.6 0.2 0.0051 16.6 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family YtxH PF12732.2 gi|344209663|ref|YP_004785840.1| - 0.13 12.6 1.5 0.42 11.0 1.1 1.8 1 1 0 1 1 1 0 YtxH-like protein Phe_tRNA-synt_N PF02912.13 gi|344209663|ref|YP_004785840.1| - 1 9.1 4.0 0.4 10.4 0.9 1.7 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain ATP-synt_B PF00430.13 gi|344209663|ref|YP_004785840.1| - 1.1 9.1 5.8 0.17 11.6 0.7 1.9 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) RHH_1 PF01402.16 gi|344209664|ref|YP_004785841.1| - 0.0065 16.3 0.5 0.017 15.0 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family WWE PF02825.15 gi|344209664|ref|YP_004785841.1| - 0.049 13.0 0.2 5.5 6.4 0.1 2.3 2 0 0 2 2 2 0 WWE domain HD_3 PF13023.1 gi|344209664|ref|YP_004785841.1| - 0.1 12.3 0.8 0.12 12.0 0.6 1.3 1 0 0 1 1 1 0 HD domain Relaxase PF03432.9 gi|344209665|ref|YP_004785842.1| - 0.025 13.9 0.5 0.051 12.9 0.3 1.8 1 1 0 1 1 1 0 Relaxase/Mobilisation nuclease domain TrwB_AAD_bind PF10412.4 gi|344209666|ref|YP_004785843.1| - 4.1e-33 114.5 0.0 5.9e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.2 gi|344209666|ref|YP_004785843.1| - 1.8e-15 57.1 0.0 3.2e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain TraG-D_C PF12696.2 gi|344209666|ref|YP_004785843.1| - 3.9e-13 49.3 1.2 6.4e-13 48.6 0.0 1.9 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG AAA_22 PF13401.1 gi|344209666|ref|YP_004785843.1| - 4.2e-05 23.7 0.0 0.0013 18.8 0.0 2.5 1 1 1 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|344209666|ref|YP_004785843.1| - 0.001 19.3 0.0 0.0026 18.0 0.0 1.7 1 0 0 1 1 1 1 ABC transporter T4SS-DNA_transf PF02534.9 gi|344209666|ref|YP_004785843.1| - 0.0029 16.2 0.0 0.0047 15.5 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer DUF87 PF01935.12 gi|344209666|ref|YP_004785843.1| - 0.017 14.9 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 KaiC PF06745.8 gi|344209666|ref|YP_004785843.1| - 0.018 14.1 0.0 0.073 12.1 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_16 PF13191.1 gi|344209666|ref|YP_004785843.1| - 0.027 14.4 0.1 0.41 10.6 0.0 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|344209666|ref|YP_004785843.1| - 0.03 15.1 0.0 0.065 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|344209666|ref|YP_004785843.1| - 0.043 12.9 0.0 0.073 12.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.24 gi|344209666|ref|YP_004785843.1| - 0.056 12.9 0.2 0.43 10.0 0.0 2.3 2 2 1 4 4 4 0 DEAD/DEAH box helicase AAA_29 PF13555.1 gi|344209666|ref|YP_004785843.1| - 0.081 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SE PF00437.15 gi|344209666|ref|YP_004785843.1| - 0.13 11.1 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|344209666|ref|YP_004785843.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|344209666|ref|YP_004785843.1| - 0.19 11.9 0.0 4 7.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Retrotrans_gag PF03732.12 gi|344209668|ref|YP_004785845.1| - 0.22 11.5 2.4 0.36 10.9 0.2 2.3 2 1 1 3 3 3 0 Retrotransposon gag protein PemK PF02452.12 gi|344209669|ref|YP_004785846.1| - 2.6e-14 53.3 0.0 2.9e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein tRNA_anti-codon PF01336.20 gi|344209670|ref|YP_004785847.1| - 0.0087 15.9 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF796 PF05638.7 gi|344209670|ref|YP_004785847.1| - 0.04 13.9 0.0 0.091 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF796) EDR1 PF14381.1 gi|344209670|ref|YP_004785847.1| - 0.086 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 NTP_transf_2 PF01909.18 gi|344209672|ref|YP_004785849.1| - 8.2e-12 45.2 0.1 1.5e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|344209672|ref|YP_004785849.1| - 8.6e-05 22.1 0.1 0.00027 20.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|344209672|ref|YP_004785849.1| - 0.0011 18.3 0.0 0.01 15.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344209672|ref|YP_004785849.1| - 0.023 14.2 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|344209672|ref|YP_004785849.1| - 0.12 12.2 0.2 0.27 11.0 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|344209672|ref|YP_004785849.1| - 0.14 12.5 0.1 0.43 10.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4249 PF14054.1 gi|344209673|ref|YP_004785850.1| - 0.056 12.7 0.1 0.072 12.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) DnaJ PF00226.26 gi|344209679|ref|YP_004785856.1| - 5.4e-10 38.8 1.1 1.3e-09 37.6 0.8 1.5 1 0 0 1 1 1 1 DnaJ domain Ndc1_Nup PF09531.5 gi|344209679|ref|YP_004785856.1| - 4.5 5.5 6.8 7.2 4.9 4.7 1.4 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup HSP70 PF00012.15 gi|344209680|ref|YP_004785857.1| - 7.9e-121 403.8 0.9 1.5e-90 303.8 0.0 3.0 1 1 2 3 3 3 3 Hsp70 protein MreB_Mbl PF06723.8 gi|344209680|ref|YP_004785857.1| - 1.1e-13 50.5 0.0 4.1e-12 45.3 0.0 2.6 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.6 gi|344209680|ref|YP_004785857.1| - 0.15 10.9 0.0 0.34 9.8 0.0 1.5 1 0 0 1 1 1 0 StbA protein DDE_Tnp_IS1595 PF12762.2 gi|344209682|ref|YP_004785859.1| - 1.3e-22 80.2 0.0 1.8e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|344209682|ref|YP_004785859.1| - 1.2e-09 37.8 0.9 2.6e-09 36.7 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|344209682|ref|YP_004785859.1| - 4.7e-07 29.5 0.0 6.8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|344209682|ref|YP_004785859.1| - 0.00021 20.7 5.0 0.00045 19.6 2.7 2.0 2 0 0 2 2 2 1 InsA N-terminal domain ADK_lid PF05191.9 gi|344209682|ref|YP_004785859.1| - 0.014 15.0 0.1 0.014 15.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_23 PF13384.1 gi|344209682|ref|YP_004785859.1| - 0.016 14.8 0.0 0.058 13.0 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain HTH_30 PF13556.1 gi|344209682|ref|YP_004785859.1| - 0.022 14.3 0.1 0.055 13.0 0.1 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|344209682|ref|YP_004785859.1| - 0.028 14.3 1.6 6.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Sigma70_r4_2 PF08281.7 gi|344209682|ref|YP_004785859.1| - 0.042 13.3 0.0 0.67 9.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Prok-RING_1 PF14446.1 gi|344209682|ref|YP_004785859.1| - 0.043 13.5 0.3 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|344209682|ref|YP_004785859.1| - 0.05 13.4 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|344209682|ref|YP_004785859.1| - 0.092 12.2 1.0 0.19 11.2 0.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HNH_5 PF14279.1 gi|344209682|ref|YP_004785859.1| - 0.098 12.6 0.1 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease zf-C2HC_2 PF13913.1 gi|344209682|ref|YP_004785859.1| - 0.11 12.1 0.6 0.11 12.1 0.4 2.4 3 0 0 3 3 2 0 zinc-finger of a C2HC-type zf-Dof PF02701.10 gi|344209682|ref|YP_004785859.1| - 0.17 11.8 3.9 0.33 10.9 2.7 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger Zn_ribbon_recom PF13408.1 gi|344209682|ref|YP_004785859.1| - 0.21 11.8 2.0 0.54 10.5 1.4 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.1 gi|344209682|ref|YP_004785859.1| - 0.37 10.8 5.1 9.9 6.2 0.1 3.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|344209682|ref|YP_004785859.1| - 0.72 9.8 4.2 0.44 10.5 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger TetR_N PF00440.18 gi|344209683|ref|YP_004785860.1| - 0.044 13.4 0.3 0.056 13.0 0.2 1.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family UvrD_C_2 PF13538.1 gi|344209684|ref|YP_004785861.1| - 7.9e-09 35.5 0.1 1.8e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain NERD PF08378.6 gi|344209684|ref|YP_004785861.1| - 1e-06 29.0 0.0 1.8e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain UvrD_C PF13361.1 gi|344209684|ref|YP_004785861.1| - 0.00013 21.5 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain DUF2075 PF09848.4 gi|344209684|ref|YP_004785861.1| - 0.0072 15.3 0.0 0.017 14.0 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) UvrD-helicase PF00580.16 gi|344209684|ref|YP_004785861.1| - 0.016 14.5 0.0 3.8 6.7 0.0 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain HSDR_N PF04313.9 gi|344209684|ref|YP_004785861.1| - 0.14 11.8 0.1 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) Lipase_GDSL_2 PF13472.1 gi|344209686|ref|YP_004785863.1| - 0.039 14.0 0.2 0.042 13.9 0.2 1.1 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family TPR_16 PF13432.1 gi|344209689|ref|YP_004785866.1| - 0.06 14.0 0.1 17 6.2 0.1 2.2 1 1 1 2 2 2 0 Tetratricopeptide repeat GCOM2 PF15328.1 gi|344209690|ref|YP_004785867.1| - 0.0035 17.1 3.2 0.0035 17.1 1.5 1.4 1 1 0 1 1 1 1 Putative GRINL1B complex locus protein 2 Tropomyosin PF00261.15 gi|344209690|ref|YP_004785867.1| - 0.011 14.7 6.1 0.02 14.0 4.2 1.3 1 0 0 1 1 1 0 Tropomyosin DUF1829 PF08862.5 gi|344209690|ref|YP_004785867.1| - 0.031 14.5 0.8 0.089 13.0 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF1829 DUF1664 PF07889.7 gi|344209690|ref|YP_004785867.1| - 0.15 11.9 2.3 0.41 10.4 1.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Synaptobrevin PF00957.16 gi|344209690|ref|YP_004785867.1| - 0.16 11.5 1.0 0.38 10.4 0.7 1.6 1 0 0 1 1 1 0 Synaptobrevin Crystall_2 PF09076.5 gi|344209691|ref|YP_004785868.1| - 0.032 13.9 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Beta/Gamma crystallin TOBE_2 PF08402.5 gi|344209691|ref|YP_004785868.1| - 0.25 11.3 0.9 1.7 8.7 0.5 1.9 1 1 1 2 2 2 0 TOBE domain zf-ribbon_3 PF13248.1 gi|344209693|ref|YP_004785870.1| - 0.00049 19.2 6.7 0.018 14.2 0.6 3.3 3 0 0 3 3 3 1 zinc-ribbon domain HypA PF01155.14 gi|344209693|ref|YP_004785870.1| - 0.0025 17.4 5.0 0.14 11.8 0.2 2.3 2 0 0 2 2 2 2 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|344209693|ref|YP_004785870.1| - 0.0081 15.9 12.4 0.0095 15.7 1.2 2.8 2 1 0 2 2 2 1 Double zinc ribbon DUF4596 PF15363.1 gi|344209693|ref|YP_004785870.1| - 0.017 15.0 0.3 0.056 13.3 0.2 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) RNA_POL_M_15KD PF02150.11 gi|344209693|ref|YP_004785870.1| - 0.11 12.1 4.1 18 5.1 0.4 3.5 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit zf-C3HC4_3 PF13920.1 gi|344209693|ref|YP_004785870.1| - 0.3 10.7 7.4 0.063 12.9 1.3 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Baculo_LEF5_C PF11792.3 gi|344209693|ref|YP_004785870.1| - 0.38 10.1 0.0 0.38 10.1 0.0 2.9 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_2 PF13240.1 gi|344209693|ref|YP_004785870.1| - 1.4 8.4 15.5 0.17 11.3 1.3 3.5 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|344209693|ref|YP_004785870.1| - 2.2 8.1 14.0 0.33 10.7 2.0 3.4 2 1 1 3 3 3 0 Transposase zinc-ribbon domain Peripla_BP_2 PF01497.13 gi|344209695|ref|YP_004785872.1| - 3.4e-08 32.9 0.2 1.9e-07 30.4 0.1 2.1 1 1 0 1 1 1 1 Periplasmic binding protein PNPase PF03726.9 gi|344209695|ref|YP_004785872.1| - 0.029 14.6 0.4 0.2 11.9 0.1 2.3 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain UPF0547 PF10571.4 gi|344209698|ref|YP_004785875.1| - 0.00056 19.5 0.5 0.0036 16.9 0.3 1.9 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|344209698|ref|YP_004785875.1| - 0.021 14.9 0.4 0.021 14.9 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|344209698|ref|YP_004785875.1| - 0.026 13.9 1.2 0.99 8.9 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|344209698|ref|YP_004785875.1| - 0.027 14.3 0.4 5.1 7.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|344209698|ref|YP_004785875.1| - 0.032 13.4 0.5 0.73 9.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|344209698|ref|YP_004785875.1| - 0.052 12.8 0.8 3.4 7.0 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|344209698|ref|YP_004785875.1| - 0.054 13.2 0.3 5.2 6.9 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|344209698|ref|YP_004785875.1| - 0.11 12.2 0.4 0.53 10.1 0.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|344209698|ref|YP_004785875.1| - 0.13 12.0 0.1 9.8 6.0 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|344209698|ref|YP_004785875.1| - 0.16 11.4 0.5 5.7 6.5 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger C1_3 PF07649.7 gi|344209698|ref|YP_004785875.1| - 0.17 11.9 2.2 6.4 6.8 0.0 2.2 2 0 0 2 2 2 0 C1-like domain zf-TFIIB PF13453.1 gi|344209698|ref|YP_004785875.1| - 0.21 10.8 0.9 1 8.6 0.6 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-RING_3 PF14369.1 gi|344209698|ref|YP_004785875.1| - 0.37 10.8 1.9 12 6.0 0.0 2.2 2 0 0 2 2 2 0 zinc-finger Glyco_transf_21 PF13506.1 gi|344209700|ref|YP_004785877.1| - 2.2e-11 43.3 0.0 3.8e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|344209700|ref|YP_004785877.1| - 5.9e-06 26.0 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|344209700|ref|YP_004785877.1| - 0.0091 15.8 0.1 0.019 14.7 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 HTH_20 PF12840.2 gi|344209701|ref|YP_004785878.1| - 1.5e-06 27.8 0.1 2.9e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|344209701|ref|YP_004785878.1| - 4.5e-06 26.2 0.1 8e-06 25.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|344209701|ref|YP_004785878.1| - 5.5e-06 25.8 0.2 1.4e-05 24.5 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|344209701|ref|YP_004785878.1| - 9e-05 22.0 0.0 0.00026 20.5 0.0 1.7 2 0 0 2 2 2 1 HTH domain PadR PF03551.9 gi|344209701|ref|YP_004785878.1| - 0.00016 21.3 0.3 0.00032 20.4 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|344209701|ref|YP_004785878.1| - 0.00019 21.0 0.0 0.00088 18.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.1 gi|344209701|ref|YP_004785878.1| - 0.0015 17.6 0.0 0.0031 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 DUF2513 PF10711.4 gi|344209701|ref|YP_004785878.1| - 0.0064 16.5 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_IclR PF09339.5 gi|344209701|ref|YP_004785878.1| - 0.0077 15.8 0.0 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|344209701|ref|YP_004785878.1| - 0.011 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.1 gi|344209701|ref|YP_004785878.1| - 0.02 15.2 0.0 0.036 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|344209701|ref|YP_004785878.1| - 0.021 14.1 0.0 0.035 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344209701|ref|YP_004785878.1| - 0.028 14.0 0.2 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 MarR family Fe_dep_repress PF01325.14 gi|344209701|ref|YP_004785878.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.1 gi|344209701|ref|YP_004785878.1| - 0.15 11.6 0.2 0.76 9.4 0.0 2.1 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain MerC PF03203.9 gi|344209702|ref|YP_004785879.1| - 0.17 12.2 0.9 0.28 11.5 0.3 1.5 1 1 0 1 1 1 0 MerC mercury resistance protein DUF1129 PF06570.6 gi|344209702|ref|YP_004785879.1| - 0.25 10.6 1.3 0.31 10.3 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Abi PF02517.11 gi|344209703|ref|YP_004785880.1| - 1.5e-13 50.7 5.6 1.5e-13 50.7 3.9 2.8 3 1 0 3 3 3 1 CAAX protease self-immunity DUF4282 PF14110.1 gi|344209703|ref|YP_004785880.1| - 1.9 8.7 15.1 1.2 9.3 0.0 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4282) DUF2105 PF09878.4 gi|344209703|ref|YP_004785880.1| - 7.7 6.0 12.8 0.18 11.3 0.6 2.6 3 0 0 3 3 3 0 Predicted membrane protein (DUF2105) TAT_signal PF10518.4 gi|344209704|ref|YP_004785881.1| - 4.9 7.4 7.8 0.18 11.8 0.8 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Spermine_synth PF01564.12 gi|344209705|ref|YP_004785882.1| - 2.5e-17 62.6 0.0 3.6e-17 62.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase Cytochrom_B558a PF05038.8 gi|344209705|ref|YP_004785882.1| - 0.015 14.9 1.0 2.9 7.4 0.1 2.4 2 0 0 2 2 2 0 Cytochrome Cytochrome b558 alpha-subunit Methyltransf_30 PF05430.6 gi|344209705|ref|YP_004785882.1| - 0.043 13.5 0.0 0.079 12.6 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF2617 PF10936.3 gi|344209706|ref|YP_004785883.1| - 1.5e-06 27.9 1.9 0.00011 21.7 1.3 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF2617 DUF3060 PF11259.3 gi|344209707|ref|YP_004785884.1| - 0.26 10.9 9.2 1.5 8.4 3.8 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3060) Pentapeptide_3 PF13576.1 gi|344209708|ref|YP_004785885.1| - 1.7e-44 149.4 88.8 4.3e-09 36.1 1.9 9.6 8 2 2 10 10 10 7 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|344209708|ref|YP_004785885.1| - 2.4e-06 27.1 3.9 2.4e-06 27.1 2.7 2.3 1 1 1 2 2 2 1 Ion channel Pentapeptide_4 PF13599.1 gi|344209708|ref|YP_004785885.1| - 0.004 16.9 44.5 3.1 7.6 5.4 7.3 4 2 0 5 5 5 2 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|344209708|ref|YP_004785885.1| - 0.052 12.8 14.0 3.3 7.0 0.2 7.3 7 0 0 7 7 7 0 Pentapeptide repeats (8 copies) ATP-grasp_4 PF13535.1 gi|344209709|ref|YP_004785886.1| - 0.036 13.8 0.4 0.62 9.7 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain Osteopontin PF00865.13 gi|344209711|ref|YP_004785888.1| - 0.15 11.2 4.3 0.18 10.9 3.0 1.1 1 0 0 1 1 1 0 Osteopontin CbiA PF01656.18 gi|344209712|ref|YP_004785889.1| - 8.5e-20 70.9 0.0 1e-19 70.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344209712|ref|YP_004785889.1| - 1.3e-06 28.3 0.0 8.1e-06 25.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|344209712|ref|YP_004785889.1| - 0.00026 20.1 0.2 0.00047 19.2 0.1 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|344209712|ref|YP_004785889.1| - 0.00027 20.0 0.1 0.023 13.7 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|344209712|ref|YP_004785889.1| - 0.0025 17.1 0.2 0.009 15.3 0.1 1.9 1 1 0 1 1 1 1 YhjQ protein AAA_25 PF13481.1 gi|344209712|ref|YP_004785889.1| - 0.058 12.7 0.1 0.11 11.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|344209712|ref|YP_004785889.1| - 0.082 12.0 0.0 0.21 10.7 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.1 gi|344209712|ref|YP_004785889.1| - 0.088 12.7 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AA_permease_2 PF13520.1 gi|344209713|ref|YP_004785890.1| - 5.4e-47 160.2 44.9 7.1e-47 159.8 31.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|344209713|ref|YP_004785890.1| - 4.1e-38 130.9 44.6 8.3e-38 129.9 30.9 1.4 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|344209713|ref|YP_004785890.1| - 3.1e-18 66.3 4.6 1.8e-10 41.1 0.4 3.0 2 1 0 2 2 2 2 Universal stress protein family Trp_Tyr_perm PF03222.8 gi|344209713|ref|YP_004785890.1| - 6.2e-08 31.8 24.8 1e-07 31.1 17.2 1.2 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family AA_permease_C PF13906.1 gi|344209713|ref|YP_004785890.1| - 8.2 6.3 10.0 0.36 10.7 2.3 2.4 2 0 0 2 2 2 0 C-terminus of AA_permease Usp PF00582.21 gi|344209714|ref|YP_004785891.1| - 6.5e-11 42.5 0.4 7.9e-11 42.3 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family ApoA-II PF04711.8 gi|344209714|ref|YP_004785891.1| - 0.062 13.2 0.0 0.17 11.7 0.0 1.8 1 1 0 1 1 1 0 Apolipoprotein A-II (ApoA-II) DUF1179 PF06678.6 gi|344209714|ref|YP_004785891.1| - 0.083 13.1 0.0 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1179) TrkH PF02386.11 gi|344209716|ref|YP_004785893.1| - 1.7e-47 161.7 22.6 4.2e-47 160.4 9.9 2.2 2 0 0 2 2 2 2 Cation transport protein TrkA_C PF02080.16 gi|344209717|ref|YP_004785894.1| - 3.5e-13 48.9 1.3 6.4e-13 48.0 0.9 1.5 1 0 0 1 1 1 1 TrkA-C domain TrkA_N PF02254.13 gi|344209717|ref|YP_004785894.1| - 1.1e-08 35.0 4.0 7.5e-08 32.3 0.4 2.8 2 1 0 2 2 2 1 TrkA-N domain ADH_zinc_N PF00107.21 gi|344209717|ref|YP_004785894.1| - 0.0021 17.6 0.1 0.0068 15.9 0.0 1.9 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Gemin7 PF11095.3 gi|344209717|ref|YP_004785894.1| - 0.0022 17.7 0.1 0.0049 16.5 0.0 1.6 1 0 0 1 1 1 1 Gem-associated protein 7 (Gemin7) Na_H_Exchanger PF00999.16 gi|344209718|ref|YP_004785895.1| - 1.8e-20 72.8 22.5 2.3e-20 72.4 15.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2678 PF10856.3 gi|344209718|ref|YP_004785895.1| - 0.3 10.8 2.2 0.42 10.3 0.4 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF2678) DisA_N PF02457.11 gi|344209719|ref|YP_004785896.1| - 2e-07 30.1 0.1 2.9e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding TrkA_N PF02254.13 gi|344209720|ref|YP_004785897.1| - 2.8e-32 111.1 8.8 2e-16 60.0 0.2 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|344209720|ref|YP_004785897.1| - 1.5e-21 75.7 1.2 4.7e-11 42.1 0.0 3.8 3 0 0 3 3 3 2 TrkA-C domain KH_1 PF00013.24 gi|344209720|ref|YP_004785897.1| - 0.0075 15.8 0.2 1.9 8.1 0.0 3.2 2 0 0 2 2 2 1 KH domain IlvN PF07991.7 gi|344209720|ref|YP_004785897.1| - 0.089 12.1 0.6 4.9 6.4 0.1 2.2 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain HTH_13 PF11972.3 gi|344209720|ref|YP_004785897.1| - 0.13 12.1 0.3 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain Ion_trans_2 PF07885.11 gi|344209720|ref|YP_004785897.1| - 2.1 8.0 7.7 4 7.2 5.4 1.5 1 0 0 1 1 1 0 Ion channel AA_permease_2 PF13520.1 gi|344209721|ref|YP_004785898.1| - 4.8e-52 176.9 42.9 5.9e-52 176.6 29.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|344209721|ref|YP_004785898.1| - 2.2e-46 158.2 40.0 2.7e-46 157.9 27.7 1.1 1 0 0 1 1 1 1 Amino acid permease Trp_Tyr_perm PF03222.8 gi|344209721|ref|YP_004785898.1| - 0.56 8.9 36.6 0.13 11.0 19.2 2.9 1 1 0 2 2 2 0 Tryptophan/tyrosine permease family TrkA_N PF02254.13 gi|344209722|ref|YP_004785899.1| - 4.4e-25 87.9 1.2 7.6e-25 87.1 0.8 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|344209722|ref|YP_004785899.1| - 3.7e-08 32.8 1.5 6.2e-08 32.1 0.1 2.1 2 0 0 2 2 2 1 TrkA-C domain Pyr_redox PF00070.22 gi|344209722|ref|YP_004785899.1| - 3.9e-08 33.5 0.1 8.3e-08 32.5 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|344209722|ref|YP_004785899.1| - 8.7e-07 29.1 1.1 8.7e-07 29.1 0.8 1.6 2 1 0 2 2 1 1 NADH(P)-binding NAD_binding_7 PF13241.1 gi|344209722|ref|YP_004785899.1| - 3.8e-06 27.0 0.1 6.8e-06 26.2 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.19 gi|344209722|ref|YP_004785899.1| - 1.9e-05 23.7 0.5 2.4e-05 23.4 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|344209722|ref|YP_004785899.1| - 0.00011 21.4 0.1 0.00024 20.2 0.1 1.5 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|344209722|ref|YP_004785899.1| - 0.00041 20.3 0.3 0.014 15.3 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|344209722|ref|YP_004785899.1| - 0.00069 19.0 0.2 0.0016 17.8 0.1 1.7 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|344209722|ref|YP_004785899.1| - 0.0011 18.0 0.6 0.0064 15.6 0.1 2.0 1 1 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|344209722|ref|YP_004785899.1| - 0.0013 18.4 0.2 0.0023 17.5 0.1 1.5 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|344209722|ref|YP_004785899.1| - 0.0014 17.9 0.1 0.0022 17.2 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_Gly3P_dh_N PF01210.18 gi|344209722|ref|YP_004785899.1| - 0.0055 16.4 0.3 0.013 15.2 0.0 1.8 3 0 0 3 3 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_trans_4_4 PF13579.1 gi|344209722|ref|YP_004785899.1| - 0.0056 16.8 0.5 0.4 10.8 0.3 2.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Saccharop_dh PF03435.13 gi|344209722|ref|YP_004785899.1| - 0.0084 15.1 0.4 0.012 14.6 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox_2 PF07992.9 gi|344209722|ref|YP_004785899.1| - 0.012 15.5 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.4 gi|344209722|ref|YP_004785899.1| - 0.014 15.1 1.6 3.2 7.4 0.1 2.5 1 1 1 2 2 2 0 Rossmann-like domain HI0933_like PF03486.9 gi|344209722|ref|YP_004785899.1| - 0.015 13.7 0.1 0.022 13.2 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|344209722|ref|YP_004785899.1| - 0.021 14.3 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|344209722|ref|YP_004785899.1| - 0.026 13.1 0.1 0.033 12.8 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase ApbA PF02558.11 gi|344209722|ref|YP_004785899.1| - 0.041 13.3 0.1 0.071 12.5 0.1 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA RrnaAD PF00398.15 gi|344209722|ref|YP_004785899.1| - 0.06 12.3 0.0 0.11 11.5 0.0 1.4 1 1 0 1 1 1 0 Ribosomal RNA adenine dimethylase FAD_binding_2 PF00890.19 gi|344209722|ref|YP_004785899.1| - 0.077 11.8 0.7 0.08 11.7 0.5 1.1 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.1 gi|344209722|ref|YP_004785899.1| - 0.077 13.0 0.0 0.17 11.8 0.0 1.5 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|344209722|ref|YP_004785899.1| - 0.08 13.2 0.1 0.18 12.1 0.0 1.7 2 0 0 2 2 2 0 XdhC Rossmann domain Glyco_transf_4 PF13439.1 gi|344209722|ref|YP_004785899.1| - 0.1 12.2 0.0 0.19 11.4 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Usp PF00582.21 gi|344209723|ref|YP_004785900.1| - 0.00011 22.3 0.1 0.21 11.8 0.0 2.5 1 1 1 2 2 2 2 Universal stress protein family TP_methylase PF00590.15 gi|344209723|ref|YP_004785900.1| - 0.11 12.2 0.0 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Fic PF02661.13 gi|344209725|ref|YP_004785902.1| - 3e-25 88.7 0.0 1.7e-24 86.3 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.1 gi|344209725|ref|YP_004785902.1| - 1.2e-23 82.7 0.0 2.6e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal HTH_27 PF13463.1 gi|344209725|ref|YP_004785902.1| - 0.024 14.9 0.0 0.1 12.9 0.0 2.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|344209725|ref|YP_004785902.1| - 0.028 14.6 0.0 0.071 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Ftsk_gamma PF09397.5 gi|344209725|ref|YP_004785902.1| - 0.064 12.9 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Ftsk gamma domain DDE_Tnp_1 PF01609.16 gi|344209726|ref|YP_004785903.1| - 1.2e-11 44.5 0.9 2.1e-11 43.7 0.3 1.5 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|344209726|ref|YP_004785903.1| - 2.6e-05 24.0 0.2 9.8e-05 22.1 0.0 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) Phage_integrase PF00589.17 gi|344209727|ref|YP_004785904.1| - 4.1e-13 49.3 0.0 1.8e-12 47.3 0.0 2.0 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|344209727|ref|YP_004785904.1| - 1.7e-05 24.8 0.1 6.1e-05 23.0 0.1 2.0 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|344209727|ref|YP_004785904.1| - 0.0012 19.1 0.0 0.0027 18.0 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.3 gi|344209727|ref|YP_004785904.1| - 0.046 12.4 0.0 0.2 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) Cdc6_C PF09079.6 gi|344209728|ref|YP_004785905.1| - 3.9e-15 55.3 0.0 4.2e-15 55.2 0.0 1.0 1 0 0 1 1 1 1 CDC6, C terminal HTH_29 PF13551.1 gi|344209728|ref|YP_004785905.1| - 0.1 12.7 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix P-II PF00543.17 gi|344209728|ref|YP_004785905.1| - 0.11 12.9 0.0 0.13 12.7 0.0 1.1 1 0 0 1 1 1 0 Nitrogen regulatory protein P-II UxaC PF02614.9 gi|344209731|ref|YP_004785908.1| - 0.22 10.0 1.0 0.29 9.7 0.1 1.6 2 0 0 2 2 2 0 Glucuronate isomerase Ribosomal_S30AE PF02482.14 gi|344209732|ref|YP_004785909.1| - 0.057 13.8 0.0 0.064 13.7 0.0 1.2 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein Colicin_D PF11429.3 gi|344209733|ref|YP_004785910.1| - 5e-15 55.4 0.3 6e-15 55.1 0.2 1.1 1 0 0 1 1 1 1 Colicin D ADH_zinc_N PF00107.21 gi|344209733|ref|YP_004785910.1| - 0.15 11.6 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase EF-hand_6 PF13405.1 gi|344209734|ref|YP_004785911.1| - 0.0064 16.2 0.5 6.5 6.9 0.0 2.6 2 0 0 2 2 2 2 EF-hand domain EF-hand_1 PF00036.27 gi|344209734|ref|YP_004785911.1| - 0.15 11.4 0.2 18 4.9 0.1 2.5 2 0 0 2 2 2 0 EF hand EppA_BapA PF07268.6 gi|344209736|ref|YP_004785913.1| - 0.07 12.8 0.0 0.91 9.1 0.0 2.3 2 0 0 2 2 2 0 Exported protein precursor (EppA/BapA) Spore_III_AF PF09581.5 gi|344209736|ref|YP_004785913.1| - 0.086 12.6 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) CCP_MauG PF03150.9 gi|344209736|ref|YP_004785913.1| - 0.1 12.8 1.0 0.25 11.6 0.1 1.8 1 1 0 2 2 2 0 Di-haem cytochrome c peroxidase DDE_3 PF13358.1 gi|344209737|ref|YP_004785914.1| - 1.2e-26 93.2 0.0 1.4e-26 92.9 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease rve PF00665.21 gi|344209737|ref|YP_004785914.1| - 8.3e-07 29.1 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Integrase core domain DDE_Tnp_ISAZ013 PF07592.6 gi|344209737|ref|YP_004785914.1| - 0.13 10.9 0.0 0.22 10.2 0.0 1.3 1 1 0 1 1 1 0 Rhodopirellula transposase DDE domain HTH_33 PF13592.1 gi|344209738|ref|YP_004785915.1| - 3.5e-16 58.5 0.1 7.5e-16 57.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_29 PF13551.1 gi|344209738|ref|YP_004785915.1| - 4.8e-12 46.0 0.0 8.2e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_32 PF13565.1 gi|344209738|ref|YP_004785915.1| - 1.1e-07 32.5 0.7 6.9e-07 29.9 0.1 2.4 2 1 0 2 2 2 1 Homeodomain-like domain HTH_23 PF13384.1 gi|344209738|ref|YP_004785915.1| - 0.0047 16.5 0.0 0.016 14.8 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|344209738|ref|YP_004785915.1| - 0.006 16.5 0.0 0.14 12.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|344209738|ref|YP_004785915.1| - 0.0074 16.4 0.9 0.068 13.3 0.0 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|344209738|ref|YP_004785915.1| - 0.011 15.6 0.0 0.029 14.3 0.0 1.8 1 1 0 1 1 1 0 Transposase DDT PF02791.12 gi|344209738|ref|YP_004785915.1| - 0.011 15.4 0.0 5.4 6.8 0.0 2.2 2 0 0 2 2 2 0 DDT domain DUF1778 PF08681.6 gi|344209738|ref|YP_004785915.1| - 0.052 13.3 0.2 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1778) HTH_21 PF13276.1 gi|344209738|ref|YP_004785915.1| - 0.059 13.3 0.0 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 HTH-like domain HTH_24 PF13412.1 gi|344209738|ref|YP_004785915.1| - 0.12 11.7 0.0 1.8 7.9 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DDE_Tnp_IS1595 PF12762.2 gi|344209739|ref|YP_004785916.1| - 1e-08 35.1 0.0 1.4e-08 34.6 0.0 1.3 1 1 0 1 1 1 1 ISXO2-like transposase domain DDE_Tnp_1 PF01609.16 gi|344209740|ref|YP_004785917.1| - 6.9e-07 29.0 0.1 1e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 Transposase DDE domain VWA_2 PF13519.1 gi|344209742|ref|YP_004785919.1| - 4.5e-25 88.7 0.8 4.5e-25 88.7 0.5 2.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|344209742|ref|YP_004785919.1| - 8.4e-20 71.2 0.2 2.1e-19 69.9 0.1 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|344209742|ref|YP_004785919.1| - 4.7e-10 39.3 0.0 1.1e-09 38.1 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|344209742|ref|YP_004785919.1| - 2.5e-05 24.2 0.0 4.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 vWA found in TerF C terminus DUF2201 PF09967.4 gi|344209742|ref|YP_004785919.1| - 0.00064 19.7 0.1 0.0023 17.9 0.0 1.9 2 0 0 2 2 2 1 VWA-like domain (DUF2201) DUF3883 PF13020.1 gi|344209742|ref|YP_004785919.1| - 0.077 12.7 0.2 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) Dockerin_1 PF00404.13 gi|344209742|ref|YP_004785919.1| - 0.078 12.7 5.0 0.06 13.0 1.1 2.9 2 0 0 2 2 2 0 Dockerin type I repeat Nop14 PF04147.7 gi|344209743|ref|YP_004785920.1| - 2.1 6.1 7.0 2.3 6.0 4.9 1.0 1 0 0 1 1 1 0 Nop14-like family Glypican PF01153.14 gi|344209743|ref|YP_004785920.1| - 2.3 6.7 5.8 2.9 6.3 4.1 1.2 1 0 0 1 1 1 0 Glypican DUF605 PF04652.11 gi|344209743|ref|YP_004785920.1| - 7 5.9 17.0 8.8 5.6 11.8 1.1 1 0 0 1 1 1 0 Vta1 like CobT PF06213.7 gi|344209743|ref|YP_004785920.1| - 8.5 5.4 9.3 12 4.8 6.4 1.4 1 1 0 1 1 1 0 Cobalamin biosynthesis protein CobT Phage_integrase PF00589.17 gi|344209744|ref|YP_004785921.1| - 6.1e-13 48.7 0.0 2.5e-12 46.7 0.0 2.0 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|344209744|ref|YP_004785921.1| - 1.3e-05 25.2 0.1 4.3e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|344209744|ref|YP_004785921.1| - 0.0018 18.5 0.0 0.0041 17.4 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF3435 PF11917.3 gi|344209744|ref|YP_004785921.1| - 0.054 12.2 0.0 0.28 9.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3435) DDE_Tnp_1 PF01609.16 gi|344209745|ref|YP_004785922.1| - 1.2e-11 44.5 0.9 2.1e-11 43.7 0.3 1.5 2 0 0 2 2 2 1 Transposase DDE domain DUF772 PF05598.6 gi|344209745|ref|YP_004785922.1| - 2.6e-05 24.0 0.2 9.8e-05 22.1 0.0 2.1 2 0 0 2 2 2 1 Transposase domain (DUF772) Fic PF02661.13 gi|344209746|ref|YP_004785923.1| - 3e-25 88.7 0.0 1.7e-24 86.3 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family Fic_N PF13784.1 gi|344209746|ref|YP_004785923.1| - 1.2e-23 82.7 0.0 2.6e-23 81.6 0.0 1.6 1 0 0 1 1 1 1 Fic/DOC family N-terminal HTH_27 PF13463.1 gi|344209746|ref|YP_004785923.1| - 0.024 14.9 0.0 0.1 12.9 0.0 2.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|344209746|ref|YP_004785923.1| - 0.028 14.6 0.0 0.071 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Ftsk_gamma PF09397.5 gi|344209746|ref|YP_004785923.1| - 0.064 12.9 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Ftsk gamma domain DDE_Tnp_IS240 PF13610.1 gi|344209747|ref|YP_004785924.1| - 1e-19 70.8 0.2 1.5e-19 70.3 0.2 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|344209747|ref|YP_004785924.1| - 1.6e-07 30.7 2.6 3e-07 29.8 1.8 1.5 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|344209747|ref|YP_004785924.1| - 0.0003 20.5 0.8 0.051 13.4 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF2384) rve PF00665.21 gi|344209747|ref|YP_004785924.1| - 0.00055 20.0 0.3 0.0017 18.4 0.1 1.9 1 1 1 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|344209747|ref|YP_004785924.1| - 0.024 13.8 0.1 0.051 12.7 0.0 1.6 1 1 0 1 1 1 0 Transposase IS66 family DUF21 PF01595.15 gi|344209750|ref|YP_004785927.1| - 3.8e-31 107.7 0.7 6e-31 107.1 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|344209750|ref|YP_004785927.1| - 1e-07 31.6 0.6 1.7e-05 24.5 0.0 2.4 2 0 0 2 2 2 2 CBS domain F420_ligase PF01996.11 gi|344209751|ref|YP_004785928.1| - 1.6e-45 154.9 2.5 2e-45 154.6 1.8 1.1 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase GPDPase_memb PF10110.4 gi|344209753|ref|YP_004785930.1| - 0.00019 20.8 3.8 0.00025 20.4 1.8 1.9 1 1 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase HTH_20 PF12840.2 gi|344209754|ref|YP_004785931.1| - 2.7e-14 52.7 0.0 4.3e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209754|ref|YP_004785931.1| - 3.4e-09 35.9 0.0 7.8e-09 34.7 0.0 1.6 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|344209754|ref|YP_004785931.1| - 1.8e-05 24.2 0.0 4.7e-05 22.9 0.0 1.8 2 1 0 2 2 2 1 MarR family TrmB PF01978.14 gi|344209754|ref|YP_004785931.1| - 0.00013 21.5 0.0 0.00037 20.1 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|344209754|ref|YP_004785931.1| - 0.00014 21.4 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|344209754|ref|YP_004785931.1| - 0.0029 17.2 0.0 0.0046 16.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain FaeA PF04703.7 gi|344209754|ref|YP_004785931.1| - 0.0034 17.5 0.0 0.0078 16.3 0.0 1.5 1 1 0 1 1 1 1 FaeA-like protein HTH_34 PF13601.1 gi|344209754|ref|YP_004785931.1| - 0.0062 16.5 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|344209754|ref|YP_004785931.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.5 1 1 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.5 gi|344209754|ref|YP_004785931.1| - 0.02 14.4 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|344209754|ref|YP_004785931.1| - 0.031 14.1 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PqqD PF05402.7 gi|344209754|ref|YP_004785931.1| - 0.05 13.6 0.0 0.22 11.5 0.0 2.0 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) RepL PF05732.6 gi|344209754|ref|YP_004785931.1| - 0.074 12.2 0.0 0.17 11.1 0.0 1.5 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF2513 PF10711.4 gi|344209754|ref|YP_004785931.1| - 0.08 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) B-block_TFIIIC PF04182.7 gi|344209754|ref|YP_004785931.1| - 0.082 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Phage_rep_org_N PF09681.5 gi|344209754|ref|YP_004785931.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) GPDPase_memb PF10110.4 gi|344209755|ref|YP_004785932.1| - 0.26 10.7 9.0 0.56 9.6 5.4 2.3 1 1 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase Acetyltransf_1 PF00583.19 gi|344209756|ref|YP_004785933.1| - 4.6e-18 65.0 0.0 6.6e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|344209756|ref|YP_004785933.1| - 7.5e-10 38.8 0.0 1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|344209756|ref|YP_004785933.1| - 2e-08 34.2 0.0 2.6e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|344209756|ref|YP_004785933.1| - 2.3e-08 34.1 0.0 2.8e-08 33.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|344209756|ref|YP_004785933.1| - 3e-06 27.4 0.0 3.8e-06 27.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|344209756|ref|YP_004785933.1| - 7.7e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|344209756|ref|YP_004785933.1| - 0.00041 20.3 0.0 0.00059 19.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|344209756|ref|YP_004785933.1| - 0.00056 19.7 0.0 0.001 18.9 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|344209756|ref|YP_004785933.1| - 0.025 14.4 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Glyoxalase_2 PF12681.2 gi|344209756|ref|YP_004785933.1| - 0.054 14.1 0.2 0.51 10.9 0.0 2.3 1 1 1 2 2 2 0 Glyoxalase-like domain Got1 PF04178.7 gi|344209757|ref|YP_004785934.1| - 0.31 11.1 6.5 0.41 10.7 4.5 1.3 1 0 0 1 1 1 0 Got1/Sft2-like family DUF2627 PF11118.3 gi|344209757|ref|YP_004785934.1| - 7.2 6.7 6.8 2.3 8.3 1.7 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) DUF1684 PF07920.6 gi|344209758|ref|YP_004785935.1| - 0.039 13.7 0.1 0.051 13.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1684) JmjC PF02373.17 gi|344209758|ref|YP_004785935.1| - 0.13 12.4 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 JmjC domain, hydroxylase GPDPase_memb PF10110.4 gi|344209759|ref|YP_004785936.1| - 0.0018 17.7 0.3 0.003 16.9 0.2 1.3 1 0 0 1 1 1 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF3814 PF12769.2 gi|344209759|ref|YP_004785936.1| - 0.14 12.3 2.3 4.4 7.5 0.1 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3814) PQQ_2 PF13360.1 gi|344209760|ref|YP_004785937.1| - 1.7e-35 122.6 3.2 1.4e-16 60.7 0.1 3.1 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|344209760|ref|YP_004785937.1| - 3.7e-28 96.9 13.7 4.3e-06 26.8 0.0 8.2 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|344209760|ref|YP_004785937.1| - 4.7e-17 60.5 7.0 0.00031 20.1 0.0 8.0 7 1 2 9 9 9 5 PQQ enzyme repeat HNH_2 PF13391.1 gi|344209762|ref|YP_004785939.1| - 6e-12 45.1 0.1 1.2e-11 44.2 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease HTH_45 PF14947.1 gi|344209762|ref|YP_004785939.1| - 8.2e-06 25.5 0.0 0.0099 15.6 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix HemN_C PF06969.11 gi|344209762|ref|YP_004785939.1| - 0.013 15.5 0.1 5.1 7.2 0.0 2.4 2 0 0 2 2 2 0 HemN C-terminal domain DUF4423 PF14394.1 gi|344209762|ref|YP_004785939.1| - 0.1 12.1 0.0 2.3 7.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) AAA_assoc_C PF09821.4 gi|344209762|ref|YP_004785939.1| - 0.11 12.7 0.0 0.76 10.0 0.0 2.1 2 0 0 2 2 2 0 C-terminal AAA-associated domain FokI_C PF02980.11 gi|344209762|ref|YP_004785939.1| - 0.13 11.8 0.0 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Restriction endonuclease FokI, catalytic domain DUF2953 PF11167.3 gi|344209762|ref|YP_004785939.1| - 0.14 12.0 0.1 0.56 10.1 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) Exonuc_VII_S PF02609.11 gi|344209763|ref|YP_004785940.1| - 1.8e-11 43.6 0.8 1.9e-11 43.5 0.6 1.1 1 0 0 1 1 1 1 Exonuclease VII small subunit UBN2_2 PF14227.1 gi|344209763|ref|YP_004785940.1| - 0.11 12.0 0.3 0.16 11.5 0.2 1.4 1 1 0 1 1 1 0 gag-polypeptide of LTR copia-type Rnk_N PF14760.1 gi|344209763|ref|YP_004785940.1| - 0.35 10.9 4.3 7.5 6.7 3.0 2.2 1 1 0 1 1 1 0 Rnk N-terminus Exonuc_VII_L PF02601.10 gi|344209764|ref|YP_004785941.1| - 1.3e-61 208.5 0.3 1.7e-61 208.1 0.2 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit tRNA_anti_2 PF13742.1 gi|344209764|ref|YP_004785941.1| - 3.8e-20 71.6 0.1 7.2e-20 70.6 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF2077 PF09850.4 gi|344209764|ref|YP_004785941.1| - 0.0097 15.3 0.2 0.019 14.3 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2077) DUF4407 PF14362.1 gi|344209764|ref|YP_004785941.1| - 0.01 14.7 1.0 0.019 13.9 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) SSB PF00436.20 gi|344209764|ref|YP_004785941.1| - 0.039 13.8 0.0 0.095 12.5 0.0 1.6 1 0 0 1 1 1 0 Single-strand binding protein family KapB PF08810.5 gi|344209764|ref|YP_004785941.1| - 0.044 13.8 0.6 0.33 11.0 0.1 2.3 1 1 1 2 2 2 0 Kinase associated protein B tRNA_anti-codon PF01336.20 gi|344209764|ref|YP_004785941.1| - 0.049 13.5 0.2 0.081 12.7 0.1 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain T2SF PF00482.18 gi|344209764|ref|YP_004785941.1| - 0.092 12.6 1.0 0.19 11.6 0.1 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|344209764|ref|YP_004785941.1| - 0.093 11.5 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin DUF2721 PF11026.3 gi|344209764|ref|YP_004785941.1| - 0.16 11.5 3.2 0.14 11.7 0.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) DUF4164 PF13747.1 gi|344209764|ref|YP_004785941.1| - 0.7 10.0 10.2 10 6.3 0.1 3.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) KfrA_N PF11740.3 gi|344209764|ref|YP_004785941.1| - 1.2 9.5 8.2 0.35 11.3 3.2 1.9 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term CbiA PF01656.18 gi|344209765|ref|YP_004785942.1| - 7.5e-20 71.1 0.0 9.7e-20 70.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|344209765|ref|YP_004785942.1| - 1.2e-06 27.8 0.0 2e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|344209765|ref|YP_004785942.1| - 7.1e-06 26.0 0.0 7.1e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|344209765|ref|YP_004785942.1| - 0.00025 20.2 0.1 0.016 14.3 0.0 2.2 1 1 0 2 2 2 1 ATPase MipZ SRP54 PF00448.17 gi|344209765|ref|YP_004785942.1| - 0.005 16.3 0.0 0.019 14.3 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|344209765|ref|YP_004785942.1| - 0.0058 15.8 0.0 0.0097 15.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|344209765|ref|YP_004785942.1| - 0.0072 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein AAA_19 PF13245.1 gi|344209765|ref|YP_004785942.1| - 0.037 13.7 0.0 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain HpaP PF09483.5 gi|344209766|ref|YP_004785943.1| - 0.2 11.5 2.6 0.26 11.2 1.8 1.2 1 0 0 1 1 1 0 Type III secretion protein (HpaP) EBV-NA3 PF05009.7 gi|344209766|ref|YP_004785943.1| - 0.26 10.5 4.4 0.37 10.0 3.1 1.3 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) Neisseria_TspB PF05616.8 gi|344209766|ref|YP_004785943.1| - 0.58 8.4 3.4 0.63 8.3 2.4 1.1 1 0 0 1 1 1 0 Neisseria meningitidis TspB protein Tetraspannin PF00335.15 gi|344209767|ref|YP_004785944.1| - 0.27 10.4 2.1 4.4 6.5 1.5 2.0 2 0 0 2 2 2 0 Tetraspanin family Antirestrict PF03230.8 gi|344209767|ref|YP_004785944.1| - 1 9.4 3.0 5.5 7.0 0.5 2.3 2 0 0 2 2 2 0 Antirestriction protein ABC_tran PF00005.22 gi|344209769|ref|YP_004785946.1| - 1.7e-37 128.7 0.0 2.8e-37 128.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|344209769|ref|YP_004785946.1| - 9.3e-26 90.8 0.4 1.1e-25 90.5 0.3 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_17 PF13207.1 gi|344209769|ref|YP_004785946.1| - 9.2e-05 23.2 0.3 0.00036 21.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344209769|ref|YP_004785946.1| - 0.00017 20.7 0.0 0.00031 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|344209769|ref|YP_004785946.1| - 0.00024 21.1 0.0 0.028 14.3 0.0 2.2 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|344209769|ref|YP_004785946.1| - 0.00032 20.0 0.4 0.014 14.6 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|344209769|ref|YP_004785946.1| - 0.0032 17.7 0.1 0.016 15.5 0.1 2.0 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|344209769|ref|YP_004785946.1| - 0.0044 16.1 0.2 0.019 14.0 0.0 2.1 2 0 0 2 2 2 1 Zeta toxin AAA_29 PF13555.1 gi|344209769|ref|YP_004785946.1| - 0.0044 16.5 0.1 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344209769|ref|YP_004785946.1| - 0.0063 16.5 1.7 0.02 14.8 1.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|344209769|ref|YP_004785946.1| - 0.0065 16.6 0.3 0.038 14.1 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344209769|ref|YP_004785946.1| - 0.0075 16.4 0.0 0.069 13.3 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|344209769|ref|YP_004785946.1| - 0.02 15.2 0.0 0.036 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|344209769|ref|YP_004785946.1| - 0.023 14.0 2.0 0.15 11.3 1.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|344209769|ref|YP_004785946.1| - 0.026 14.2 0.4 0.12 12.1 0.3 2.2 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|344209769|ref|YP_004785946.1| - 0.036 13.8 0.1 0.13 11.9 0.0 2.0 1 0 0 1 1 1 0 Part of AAA domain IstB_IS21 PF01695.12 gi|344209769|ref|YP_004785946.1| - 0.037 13.4 0.1 0.51 9.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_33 PF13671.1 gi|344209769|ref|YP_004785946.1| - 0.039 13.8 0.0 0.084 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|344209769|ref|YP_004785946.1| - 0.059 12.9 1.7 0.5 9.9 1.2 2.2 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|344209769|ref|YP_004785946.1| - 0.07 12.7 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF87 PF01935.12 gi|344209769|ref|YP_004785946.1| - 0.07 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|344209769|ref|YP_004785946.1| - 0.082 12.3 0.0 0.3 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.18 gi|344209769|ref|YP_004785946.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.10 gi|344209769|ref|YP_004785946.1| - 0.15 11.7 0.5 12 5.5 0.0 2.4 1 1 1 2 2 2 0 NTPase DUF4131 PF13567.1 gi|344209769|ref|YP_004785946.1| - 2.1 7.7 5.9 0.56 9.6 0.1 2.6 2 2 0 2 2 2 0 Domain of unknown function (DUF4131) IucA_IucC PF04183.7 gi|344209770|ref|YP_004785947.1| - 1.3e-67 227.6 0.0 1.8e-67 227.2 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|344209770|ref|YP_004785947.1| - 2.3e-32 112.2 0.1 5.1e-32 111.0 0.1 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Gln-synt_C PF00120.19 gi|344209771|ref|YP_004785948.1| - 1.3e-63 214.6 0.0 1.6e-63 214.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|344209771|ref|YP_004785948.1| - 0.083 12.4 0.0 0.77 9.3 0.0 2.4 3 0 0 3 3 3 0 Glutamine synthetase, beta-Grasp domain Aminotran_3 PF00202.16 gi|344209772|ref|YP_004785949.1| - 1.3e-95 320.1 0.0 1.5e-95 319.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III IucA_IucC PF04183.7 gi|344209773|ref|YP_004785950.1| - 4.1e-67 226.0 0.1 8.2e-67 225.0 0.1 1.5 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|344209773|ref|YP_004785950.1| - 4.2e-32 111.3 0.0 7.1e-32 110.6 0.0 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Peripla_BP_2 PF01497.13 gi|344209774|ref|YP_004785951.1| - 9.9e-20 70.6 0.1 2.7e-19 69.2 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|344209774|ref|YP_004785951.1| - 0.00018 21.2 0.3 0.00032 20.4 0.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DAO PF01266.19 gi|344209775|ref|YP_004785952.1| - 5.2e-05 22.3 8.4 0.003 16.5 1.9 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|344209775|ref|YP_004785952.1| - 0.00014 20.4 0.1 0.57 8.5 0.1 3.0 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|344209775|ref|YP_004785952.1| - 0.00036 20.5 1.5 0.00091 19.2 0.1 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|344209775|ref|YP_004785952.1| - 0.00092 18.3 6.3 0.0023 17.0 1.4 2.2 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|344209775|ref|YP_004785952.1| - 0.0093 15.8 0.7 0.0093 15.8 0.5 2.6 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|344209775|ref|YP_004785952.1| - 0.021 13.9 1.9 0.033 13.2 1.3 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.12 gi|344209775|ref|YP_004785952.1| - 0.05 12.7 2.1 0.06 12.4 0.3 1.9 2 1 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|344209775|ref|YP_004785952.1| - 0.092 11.5 0.3 0.16 10.7 0.1 1.4 1 1 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|344209775|ref|YP_004785952.1| - 0.11 11.2 8.9 0.024 13.4 3.0 2.1 2 1 0 2 2 2 0 FAD binding domain zf-TFIIB PF13453.1 gi|344209777|ref|YP_004785954.1| - 0.03 13.4 1.7 0.03 13.4 1.2 1.9 2 0 0 2 2 2 0 Transcription factor zinc-finger DUF1660 PF07874.6 gi|344209777|ref|YP_004785954.1| - 0.19 12.0 3.0 2.1 8.6 0.3 3.0 2 1 0 2 2 2 0 Prophage protein (DUF1660) zf-FPG_IleRS PF06827.9 gi|344209777|ref|YP_004785954.1| - 0.65 9.6 5.8 30 4.3 0.1 3.6 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|344209777|ref|YP_004785954.1| - 1.3 9.0 6.7 0.97 9.4 1.6 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|344209777|ref|YP_004785954.1| - 1.5 8.6 4.1 30 4.4 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|344209777|ref|YP_004785954.1| - 1.6 8.4 4.0 31 4.2 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|344209779|ref|YP_004785956.1| - 0.0025 17.1 0.5 0.0075 15.5 0.3 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|344209779|ref|YP_004785956.1| - 0.0031 17.2 0.7 0.0057 16.4 0.5 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DUF2387 PF09526.5 gi|344209779|ref|YP_004785956.1| - 0.0069 16.2 0.2 0.0069 16.2 0.1 2.1 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|344209779|ref|YP_004785956.1| - 0.025 14.3 0.6 0.045 13.5 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|344209779|ref|YP_004785956.1| - 0.037 13.8 0.5 0.078 12.7 0.4 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|344209779|ref|YP_004785956.1| - 0.056 12.6 1.6 0.1 11.7 1.1 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF1657 PF07870.6 gi|344209779|ref|YP_004785956.1| - 0.085 12.5 0.3 0.2 11.3 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1657) Lar_restr_allev PF14354.1 gi|344209779|ref|YP_004785956.1| - 0.13 12.5 0.5 0.35 11.2 0.3 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.6 gi|344209779|ref|YP_004785956.1| - 0.13 11.9 0.4 0.27 10.8 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|344209779|ref|YP_004785956.1| - 0.37 10.3 2.3 4.1 7.0 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain MreB_Mbl PF06723.8 gi|344209780|ref|YP_004785957.1| - 9.7e-07 27.6 0.0 0.004 15.8 0.0 2.2 2 0 0 2 2 2 2 MreB/Mbl protein Fig1 PF12351.3 gi|344209781|ref|YP_004785958.1| - 2.2 8.1 5.8 0.69 9.7 1.6 1.8 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 Yip1 PF04893.12 gi|344209781|ref|YP_004785958.1| - 7.1 6.0 18.8 25 4.2 13.2 1.7 1 1 0 1 1 1 0 Yip1 domain XRCC1_N PF01834.11 gi|344209782|ref|YP_004785959.1| - 0.071 12.5 0.0 0.072 12.5 0.0 1.0 1 0 0 1 1 1 0 XRCC1 N terminal domain DoxX_3 PF13781.1 gi|344209783|ref|YP_004785960.1| - 7.6e-06 26.2 3.2 1.2e-05 25.5 2.2 1.5 1 0 0 1 1 1 1 DoxX-like family DoxX_2 PF13564.1 gi|344209783|ref|YP_004785960.1| - 0.007 16.3 8.1 0.012 15.5 5.6 1.4 1 0 0 1 1 1 1 DoxX-like family MauE PF07291.6 gi|344209783|ref|YP_004785960.1| - 0.024 14.2 5.6 0.031 13.9 3.9 1.2 1 0 0 1 1 1 0 Methylamine utilisation protein MauE DoxX PF07681.7 gi|344209783|ref|YP_004785960.1| - 0.13 12.7 8.6 0.24 11.8 5.9 1.6 1 0 0 1 1 1 0 DoxX VIT1 PF01988.14 gi|344209784|ref|YP_004785961.1| - 9.1e-19 67.7 16.5 7.6e-11 41.8 6.6 2.0 1 1 1 2 2 2 2 VIT family DUF3318 PF11780.3 gi|344209784|ref|YP_004785961.1| - 0.3 10.6 7.9 0.24 10.9 0.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3318) DUF533 PF04391.7 gi|344209784|ref|YP_004785961.1| - 0.49 9.7 0.0 0.49 9.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF533) DUF211 PF02680.9 gi|344209785|ref|YP_004785962.1| - 4.9e-35 119.2 0.3 5.4e-35 119.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|344209785|ref|YP_004785962.1| - 0.03 14.4 0.2 0.064 13.4 0.1 1.6 1 1 0 1 1 1 0 Heavy-metal-associated domain Usp PF00582.21 gi|344209786|ref|YP_004785963.1| - 4.9e-59 198.5 8.7 1.6e-29 102.8 0.5 2.0 2 0 0 2 2 2 2 Universal stress protein family Fn3_assoc PF13287.1 gi|344209786|ref|YP_004785963.1| - 0.0066 16.5 0.2 0.015 15.3 0.1 1.6 1 0 0 1 1 1 1 Fn3 associated CHB_HEX_C PF03174.8 gi|344209786|ref|YP_004785963.1| - 0.025 14.4 0.2 0.056 13.2 0.1 1.5 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain CHB_HEX_C_1 PF13290.1 gi|344209786|ref|YP_004785963.1| - 0.12 12.1 0.2 0.29 10.9 0.1 1.6 1 0 0 1 1 1 0 Chitobiase/beta-hexosaminidase C-terminal domain Inhibitor_I48 PF10467.4 gi|344209787|ref|YP_004785964.1| - 0.082 12.8 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 Peptidase inhibitor clitocypin PyrI_C PF02748.10 gi|344209789|ref|YP_004785966.1| - 0.009 15.4 0.9 0.014 14.8 0.0 1.7 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-FCS PF06467.9 gi|344209789|ref|YP_004785966.1| - 0.01 15.4 1.3 0.021 14.4 0.8 1.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|344209789|ref|YP_004785966.1| - 0.091 12.9 0.3 0.091 12.9 0.2 1.6 2 0 0 2 2 2 0 Archaeal TRASH domain Zn-ribbon_8 PF09723.5 gi|344209789|ref|YP_004785966.1| - 0.13 12.2 0.1 0.13 12.2 0.1 1.8 2 0 0 2 2 2 0 Zinc ribbon domain Pyr_redox_2 PF07992.9 gi|344209790|ref|YP_004785967.1| - 3.2e-44 151.2 0.7 4.8e-44 150.6 0.5 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|344209790|ref|YP_004785967.1| - 5.4e-37 126.1 1.5 1.1e-36 125.1 1.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|344209790|ref|YP_004785967.1| - 3.1e-21 75.5 5.0 4.2e-17 62.3 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|344209790|ref|YP_004785967.1| - 6.8e-09 35.0 5.0 5.3e-07 28.8 1.8 2.7 2 1 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|344209790|ref|YP_004785967.1| - 8.4e-09 34.7 12.2 2.8e-07 29.7 2.0 4.1 2 1 2 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|344209790|ref|YP_004785967.1| - 1.6e-08 34.0 1.1 1.6e-08 34.0 0.8 2.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.19 gi|344209790|ref|YP_004785967.1| - 2.6e-08 33.1 11.4 8.6e-05 21.6 1.0 4.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|344209790|ref|YP_004785967.1| - 1.2e-07 31.6 4.0 0.0002 21.2 0.8 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|344209790|ref|YP_004785967.1| - 2.4e-07 29.5 6.0 4.2e-05 22.1 0.6 3.7 3 1 1 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|344209790|ref|YP_004785967.1| - 5.5e-07 28.9 9.8 0.0018 17.4 0.8 3.2 2 1 1 3 3 3 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|344209790|ref|YP_004785967.1| - 3.3e-06 27.2 0.3 4.3e-05 23.6 0.1 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|344209790|ref|YP_004785967.1| - 3.6e-05 22.9 2.3 0.0089 15.1 0.2 2.4 2 0 0 2 2 2 2 Thi4 family UDPG_MGDP_dh_N PF03721.9 gi|344209790|ref|YP_004785967.1| - 6.1e-05 22.4 1.5 0.0014 18.0 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|344209790|ref|YP_004785967.1| - 9.9e-05 22.0 4.4 0.0086 15.7 0.0 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|344209790|ref|YP_004785967.1| - 0.00013 22.2 0.2 0.012 15.8 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|344209790|ref|YP_004785967.1| - 0.00085 18.9 2.9 0.041 13.4 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.7 gi|344209790|ref|YP_004785967.1| - 0.0011 18.0 3.7 0.12 11.2 0.8 2.7 3 0 0 3 3 3 2 Lycopene cyclase protein TrkA_N PF02254.13 gi|344209790|ref|YP_004785967.1| - 0.0077 16.2 1.9 0.046 13.7 0.1 2.5 2 0 0 2 2 2 1 TrkA-N domain Trp_halogenase PF04820.9 gi|344209790|ref|YP_004785967.1| - 0.018 13.6 1.4 0.079 11.5 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase 2-Hacid_dh_C PF02826.14 gi|344209790|ref|YP_004785967.1| - 0.041 13.0 0.5 0.77 8.8 0.0 2.4 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|344209790|ref|YP_004785967.1| - 0.075 13.2 0.2 17 5.7 0.0 2.7 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|344209790|ref|YP_004785967.1| - 0.2 11.4 4.4 1.4 8.7 0.1 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding 2-oxoacid_dh PF00198.18 gi|344209791|ref|YP_004785968.1| - 1.6e-87 292.5 0.0 2.6e-87 291.9 0.0 1.3 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|344209791|ref|YP_004785968.1| - 4.7e-23 80.6 0.7 1.1e-22 79.4 0.5 1.7 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|344209791|ref|YP_004785968.1| - 1.6e-11 43.6 1.2 2.1e-07 30.4 0.3 3.5 3 1 0 3 3 3 2 e3 binding domain GCV_H PF01597.14 gi|344209791|ref|YP_004785968.1| - 0.0001 21.9 0.2 0.00035 20.2 0.1 1.9 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl_2 PF13533.1 gi|344209791|ref|YP_004785968.1| - 0.00088 18.8 1.4 0.00088 18.8 1.0 4.0 4 1 1 5 5 5 1 Biotin-lipoyl like HlyD_2 PF12700.2 gi|344209791|ref|YP_004785968.1| - 0.0011 18.1 10.2 0.53 9.3 8.0 3.1 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|344209791|ref|YP_004785968.1| - 0.092 13.0 4.5 0.18 12.1 0.2 3.1 2 1 1 3 3 3 0 HlyD family secretion protein Paramyxo_ncap PF00973.14 gi|344209791|ref|YP_004785968.1| - 7.9 5.0 8.1 13 4.3 5.6 1.3 1 0 0 1 1 1 0 Paramyxovirus nucleocapsid protein Transket_pyr PF02779.19 gi|344209792|ref|YP_004785969.1| - 8.6e-49 165.4 0.0 1.2e-48 164.9 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|344209792|ref|YP_004785969.1| - 8.4e-34 116.1 0.1 1.9e-33 115.0 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|344209793|ref|YP_004785970.1| - 2.9e-80 269.2 0.0 3.7e-80 268.8 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|344209793|ref|YP_004785970.1| - 1.9e-07 30.3 0.0 3.8e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|344209793|ref|YP_004785970.1| - 2.5e-06 26.5 0.0 5.4e-06 25.4 0.0 1.6 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|344209793|ref|YP_004785970.1| - 0.001 18.6 0.3 0.0061 16.1 0.2 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABC_tran PF00005.22 gi|344209794|ref|YP_004785971.1| - 1.4e-28 99.9 0.0 2.1e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344209794|ref|YP_004785971.1| - 9.3e-13 48.7 0.1 1.7e-05 24.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|344209794|ref|YP_004785971.1| - 0.00019 20.7 1.8 0.003 16.8 0.1 2.3 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344209794|ref|YP_004785971.1| - 0.00036 19.9 0.0 0.00094 18.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|344209794|ref|YP_004785971.1| - 0.001 18.5 0.2 0.003 17.0 0.1 1.6 1 1 1 2 2 2 1 AAA-like domain AAA_23 PF13476.1 gi|344209794|ref|YP_004785971.1| - 0.0015 18.8 0.1 0.0016 18.7 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|344209794|ref|YP_004785971.1| - 0.005 15.9 0.0 0.061 12.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|344209794|ref|YP_004785971.1| - 0.0084 16.1 0.2 0.056 13.4 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|344209794|ref|YP_004785971.1| - 0.014 15.5 0.9 0.19 11.8 0.2 2.1 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.16 gi|344209794|ref|YP_004785971.1| - 0.024 14.0 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_33 PF13671.1 gi|344209794|ref|YP_004785971.1| - 0.035 13.9 0.1 0.063 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|344209794|ref|YP_004785971.1| - 0.036 14.8 0.4 0.092 13.5 0.1 1.8 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|344209794|ref|YP_004785971.1| - 0.037 12.7 0.3 0.1 11.3 0.1 1.6 2 0 0 2 2 2 0 ArgK protein AAA_25 PF13481.1 gi|344209794|ref|YP_004785971.1| - 0.049 13.0 0.0 0.38 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|344209794|ref|YP_004785971.1| - 0.052 13.1 0.5 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|344209794|ref|YP_004785971.1| - 0.097 12.3 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|344209794|ref|YP_004785971.1| - 0.11 11.3 0.4 0.16 10.8 0.3 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|344209794|ref|YP_004785971.1| - 0.12 12.2 3.7 2.6 8.0 2.6 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_tran PF00005.22 gi|344209795|ref|YP_004785972.1| - 3.1e-30 105.2 0.0 4.6e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344209795|ref|YP_004785972.1| - 4.4e-13 49.8 0.2 6.7e-06 26.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|344209795|ref|YP_004785972.1| - 9.2e-07 28.4 0.0 1.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_29 PF13555.1 gi|344209795|ref|YP_004785972.1| - 1.1e-06 28.0 0.0 2.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|344209795|ref|YP_004785972.1| - 5.7e-05 23.5 1.7 7.5e-05 23.1 0.4 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344209795|ref|YP_004785972.1| - 7.7e-05 22.0 0.9 0.0047 16.1 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MukB PF04310.7 gi|344209795|ref|YP_004785972.1| - 0.057 12.7 0.1 0.085 12.1 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_10 PF12846.2 gi|344209795|ref|YP_004785972.1| - 0.067 12.6 0.4 12 5.2 0.0 2.3 2 1 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|344209795|ref|YP_004785972.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 BPD_transp_2 PF02653.11 gi|344209796|ref|YP_004785973.1| - 9.3e-37 126.4 31.1 9.3e-37 126.4 21.5 2.1 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|344209797|ref|YP_004785974.1| - 2.5e-33 115.1 54.2 2.5e-33 115.1 37.5 2.4 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Aminotran_1_2 PF00155.16 gi|344209798|ref|YP_004785975.1| - 2.3e-60 204.4 0.0 2.6e-60 204.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|344209798|ref|YP_004785975.1| - 2.4e-13 49.8 0.0 3.7e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|344209798|ref|YP_004785975.1| - 6.7e-07 28.3 0.0 9.7e-07 27.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|344209798|ref|YP_004785975.1| - 1.8e-06 26.5 0.0 2.7e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|344209798|ref|YP_004785975.1| - 2.9e-06 26.6 0.0 6.6e-06 25.4 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Peripla_BP_6 PF13458.1 gi|344209799|ref|YP_004785976.1| - 2.3e-35 122.5 1.8 4.6e-35 121.5 1.2 1.5 1 1 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|344209799|ref|YP_004785976.1| - 5.7e-21 74.6 0.0 7.5e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|344209799|ref|YP_004785976.1| - 0.011 15.6 1.6 0.011 15.6 1.1 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence TPP_enzyme_M PF00205.17 gi|344209800|ref|YP_004785977.1| - 2.4e-35 121.2 2.2 4.4e-35 120.4 0.1 2.2 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|344209800|ref|YP_004785977.1| - 5.7e-33 113.6 2.0 1.3e-32 112.5 1.4 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.13 gi|344209800|ref|YP_004785977.1| - 3e-32 111.4 2.6 8.5e-32 110.0 0.0 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|344209800|ref|YP_004785977.1| - 0.064 12.1 0.2 0.12 11.2 0.1 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Epimerase PF01370.16 gi|344209801|ref|YP_004785978.1| - 2.9e-43 148.0 0.6 3.7e-43 147.6 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|344209801|ref|YP_004785978.1| - 5.5e-20 71.2 0.0 7.2e-20 70.8 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|344209801|ref|YP_004785978.1| - 6.7e-14 51.4 1.1 8.5e-14 51.1 0.8 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|344209801|ref|YP_004785978.1| - 8.6e-12 44.5 1.1 9.6e-10 37.8 0.8 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|344209801|ref|YP_004785978.1| - 7.4e-11 42.3 0.3 1.1e-10 41.8 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|344209801|ref|YP_004785978.1| - 6.5e-09 35.0 0.0 4.6e-08 32.3 0.0 2.0 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|344209801|ref|YP_004785978.1| - 7.8e-08 32.4 1.5 7.8e-08 32.4 1.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|344209801|ref|YP_004785978.1| - 2.1e-06 27.5 1.5 5.7e-06 26.1 1.0 1.7 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|344209801|ref|YP_004785978.1| - 1.9e-05 24.0 0.2 3.4e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_2 PF03446.10 gi|344209801|ref|YP_004785978.1| - 0.15 11.9 0.2 0.36 10.6 0.0 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_M24 PF00557.19 gi|344209802|ref|YP_004785979.1| - 5.7e-25 88.1 0.0 8.8e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|344209802|ref|YP_004785979.1| - 6.1e-05 23.5 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain RCC1_2 PF13540.1 gi|344209802|ref|YP_004785979.1| - 0.038 13.6 0.4 0.094 12.3 0.3 1.5 1 0 0 1 1 1 0 Regulator of chromosome condensation (RCC1) repeat DUF433 PF04255.9 gi|344209802|ref|YP_004785979.1| - 0.088 12.2 0.0 0.27 10.7 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Bac_luciferase PF00296.15 gi|344209803|ref|YP_004785980.1| - 4.4e-59 200.1 0.5 5.1e-59 199.9 0.4 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase 4HBT PF03061.17 gi|344209804|ref|YP_004785981.1| - 9.7e-16 57.6 0.4 1.4e-15 57.1 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|344209804|ref|YP_004785981.1| - 4.5e-08 33.1 0.0 6.2e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|344209804|ref|YP_004785981.1| - 0.0014 18.4 0.2 0.0017 18.1 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|344209804|ref|YP_004785981.1| - 0.016 14.3 0.2 0.016 14.3 0.1 1.2 1 0 0 1 1 1 0 Polyketide synthase dehydratase AMP-binding PF00501.23 gi|344209805|ref|YP_004785982.1| - 9.8e-83 277.8 0.0 1.3e-82 277.4 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344209805|ref|YP_004785982.1| - 1.6e-15 57.7 0.2 3.3e-15 56.7 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain F420_oxidored PF03807.12 gi|344209806|ref|YP_004785983.1| - 2.3e-19 69.5 0.8 4.1e-19 68.8 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|344209806|ref|YP_004785983.1| - 8.7e-06 25.5 0.0 1.2e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|344209806|ref|YP_004785983.1| - 4.9e-05 23.4 0.5 9e-05 22.5 0.4 1.5 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|344209806|ref|YP_004785983.1| - 0.00061 18.8 0.1 0.00084 18.4 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|344209806|ref|YP_004785983.1| - 0.00099 19.0 3.3 0.0014 18.5 0.4 2.1 2 0 0 2 2 2 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|344209806|ref|YP_004785983.1| - 0.0012 19.1 0.6 0.0038 17.5 0.1 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain PDH PF02153.12 gi|344209806|ref|YP_004785983.1| - 0.0035 16.2 0.0 0.006 15.5 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase NmrA PF05368.8 gi|344209806|ref|YP_004785983.1| - 0.0069 15.6 0.1 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|344209806|ref|YP_004785983.1| - 0.011 15.4 1.4 0.019 14.6 0.2 1.8 2 0 0 2 2 2 0 KR domain DapB_N PF01113.15 gi|344209806|ref|YP_004785983.1| - 0.071 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Aldedh PF00171.17 gi|344209807|ref|YP_004785984.1| - 6.8e-137 456.5 0.0 7.7e-137 456.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family EthD PF07110.6 gi|344209808|ref|YP_004785985.1| - 1.8e-24 86.4 5.8 3.9e-11 43.7 0.4 3.5 2 2 0 2 2 2 2 EthD domain ABM PF03992.11 gi|344209808|ref|YP_004785985.1| - 0.059 13.4 0.1 23 5.1 0.0 3.3 2 2 1 3 3 3 0 Antibiotic biosynthesis monooxygenase HD PF01966.17 gi|344209809|ref|YP_004785986.1| - 2e-10 40.7 0.1 2.6e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 HD domain ADH_N PF08240.7 gi|344209810|ref|YP_004785987.1| - 6.2e-11 42.0 0.0 1e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|344209810|ref|YP_004785987.1| - 2.9e-05 23.6 0.0 5.2e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|344209810|ref|YP_004785987.1| - 0.0021 18.1 0.0 0.0035 17.4 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IclR PF01614.13 gi|344209811|ref|YP_004785988.1| - 1.2e-26 92.9 0.1 2.3e-26 91.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344209811|ref|YP_004785988.1| - 2.9e-14 52.3 0.1 2.6e-13 49.3 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|344209811|ref|YP_004785988.1| - 2.5e-08 33.4 0.0 6.4e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|344209811|ref|YP_004785988.1| - 5.9e-07 29.1 0.0 1.8e-06 27.5 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|344209811|ref|YP_004785988.1| - 4.9e-06 26.1 0.0 1.8e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|344209811|ref|YP_004785988.1| - 1.2e-05 24.9 0.0 2.9e-05 23.7 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209811|ref|YP_004785988.1| - 6e-05 22.3 0.0 0.00012 21.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|344209811|ref|YP_004785988.1| - 0.00041 19.9 0.0 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 HTH domain MarR PF01047.17 gi|344209811|ref|YP_004785988.1| - 0.00071 19.2 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|344209811|ref|YP_004785988.1| - 0.0096 16.0 0.0 0.025 14.6 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.1 gi|344209811|ref|YP_004785988.1| - 0.025 14.2 0.0 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_45 PF14947.1 gi|344209811|ref|YP_004785988.1| - 0.027 14.2 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_22 PF13309.1 gi|344209811|ref|YP_004785988.1| - 0.039 13.7 0.0 0.098 12.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_34 PF13601.1 gi|344209811|ref|YP_004785988.1| - 0.051 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|344209811|ref|YP_004785988.1| - 0.059 13.6 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|344209811|ref|YP_004785988.1| - 0.088 12.3 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF1803 PF08820.5 gi|344209811|ref|YP_004785988.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) MR_MLE_C PF13378.1 gi|344209812|ref|YP_004785989.1| - 5.8e-30 103.5 0.0 9.6e-30 102.8 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|344209812|ref|YP_004785989.1| - 4.9e-26 91.0 0.0 1.5e-25 89.4 0.0 1.8 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|344209812|ref|YP_004785989.1| - 7.2e-10 39.2 0.0 2e-09 37.8 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PEP_mutase PF13714.1 gi|344209812|ref|YP_004785989.1| - 0.024 13.8 0.2 0.042 13.0 0.1 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase SIS PF01380.17 gi|344209813|ref|YP_004785990.1| - 5.6e-28 97.1 0.7 5.4e-20 71.3 0.2 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|344209813|ref|YP_004785990.1| - 1.4e-07 31.2 3.5 0.00011 21.9 0.0 3.4 2 2 2 4 4 4 2 SIS domain SBP_bac_8 PF13416.1 gi|344209814|ref|YP_004785991.1| - 1.4e-27 97.1 5.6 1.4e-27 97.1 3.9 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344209814|ref|YP_004785991.1| - 5.5e-19 69.0 6.2 5.5e-19 69.0 4.3 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|344209814|ref|YP_004785991.1| - 2.2e-05 23.9 0.3 0.0042 16.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344209814|ref|YP_004785991.1| - 0.16 12.0 1.6 0.34 11.0 1.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|344209815|ref|YP_004785992.1| - 3.1e-21 75.7 15.2 3.1e-21 75.7 10.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|344209816|ref|YP_004785993.1| - 1.5e-19 70.1 14.0 1.5e-19 70.1 9.7 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_3 PF00933.16 gi|344209817|ref|YP_004785994.1| - 4.6e-76 255.6 0.0 6e-76 255.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|344209817|ref|YP_004785994.1| - 2.1e-05 24.1 0.1 3.2e-05 23.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain PIG-L PF02585.12 gi|344209818|ref|YP_004785995.1| - 3.2e-32 111.7 0.5 5e-32 111.0 0.4 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Tautomerase_3 PF14832.1 gi|344209818|ref|YP_004785995.1| - 0.11 12.5 0.0 0.31 11.0 0.0 1.8 2 0 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme SelA PF03841.8 gi|344209819|ref|YP_004785996.1| - 7.7e-10 38.0 0.4 4.5e-07 28.9 0.0 3.4 3 1 1 4 4 4 2 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|344209819|ref|YP_004785996.1| - 1.8e-07 30.2 0.3 2.8e-07 29.6 0.0 1.4 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|344209819|ref|YP_004785996.1| - 2.9e-06 26.6 0.0 9.2e-06 25.0 0.0 1.8 1 1 1 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|344209819|ref|YP_004785996.1| - 1.8e-05 23.9 0.1 3.6e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|344209819|ref|YP_004785996.1| - 0.0003 19.3 0.0 0.0004 18.9 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) NAD_binding_3 PF03447.11 gi|344209819|ref|YP_004785996.1| - 0.11 12.9 0.8 1.5 9.2 0.0 2.5 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain ABC_tran PF00005.22 gi|344209820|ref|YP_004785997.1| - 9.4e-31 106.9 0.0 1.5e-30 106.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|344209820|ref|YP_004785997.1| - 4e-13 49.1 0.7 9.9e-13 47.8 0.3 1.9 2 0 0 2 2 1 1 TOBE domain AAA_21 PF13304.1 gi|344209820|ref|YP_004785997.1| - 6.4e-10 39.4 0.0 1.5e-05 25.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|344209820|ref|YP_004785997.1| - 2.3e-05 23.6 0.0 0.00041 19.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|344209820|ref|YP_004785997.1| - 3e-05 24.0 0.9 0.00075 19.5 0.2 3.0 2 1 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|344209820|ref|YP_004785997.1| - 4.3e-05 22.8 0.2 0.00017 20.9 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|344209820|ref|YP_004785997.1| - 0.00032 20.8 0.6 0.0029 17.7 0.4 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|344209820|ref|YP_004785997.1| - 0.001 18.2 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|344209820|ref|YP_004785997.1| - 0.0031 16.2 0.0 0.0046 15.7 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|344209820|ref|YP_004785997.1| - 0.0056 16.6 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|344209820|ref|YP_004785997.1| - 0.0089 15.4 0.0 0.23 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|344209820|ref|YP_004785997.1| - 0.0095 15.8 0.8 0.017 15.0 0.5 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|344209820|ref|YP_004785997.1| - 0.013 16.2 0.1 0.026 15.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|344209820|ref|YP_004785997.1| - 0.015 14.7 0.0 0.032 13.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|344209820|ref|YP_004785997.1| - 0.028 14.6 0.1 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|344209820|ref|YP_004785997.1| - 0.065 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain PhoH PF02562.11 gi|344209820|ref|YP_004785997.1| - 0.073 12.2 0.1 2.3 7.3 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein Hexapep_2 PF14602.1 gi|344209820|ref|YP_004785997.1| - 0.44 10.1 2.1 13 5.4 0.1 2.9 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.19 gi|344209820|ref|YP_004785997.1| - 1.4 8.5 3.4 8.3 6.1 0.4 2.4 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) IclR PF01614.13 gi|344209821|ref|YP_004785998.1| - 3.8e-17 62.2 0.0 1.5e-16 60.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344209821|ref|YP_004785998.1| - 7.6e-15 54.2 0.9 5e-14 51.6 0.1 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|344209821|ref|YP_004785998.1| - 1.9e-07 30.7 0.1 7.8e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209821|ref|YP_004785998.1| - 3.8e-06 26.1 0.0 1.1e-05 24.7 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344209821|ref|YP_004785998.1| - 5.4e-06 25.9 0.1 1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344209821|ref|YP_004785998.1| - 2.2e-05 24.0 0.1 4.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|344209821|ref|YP_004785998.1| - 0.00041 20.0 0.1 0.00074 19.1 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|344209821|ref|YP_004785998.1| - 0.00072 19.1 0.1 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|344209821|ref|YP_004785998.1| - 0.0014 18.5 0.1 0.003 17.4 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|344209821|ref|YP_004785998.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|344209821|ref|YP_004785998.1| - 0.0026 17.7 0.0 0.0057 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.6 gi|344209821|ref|YP_004785998.1| - 0.0035 17.7 0.0 0.014 15.8 0.0 1.9 2 0 0 2 2 2 1 Replication protein A C terminal DUF742 PF05331.6 gi|344209821|ref|YP_004785998.1| - 0.0059 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF742) Rrf2 PF02082.15 gi|344209821|ref|YP_004785998.1| - 0.0062 16.6 0.0 0.013 15.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|344209821|ref|YP_004785998.1| - 0.019 14.5 0.0 0.05 13.1 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain HTH_9 PF08221.6 gi|344209821|ref|YP_004785998.1| - 0.042 13.7 0.1 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF336 PF03928.9 gi|344209821|ref|YP_004785998.1| - 0.048 13.4 0.2 0.51 10.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF336) HTH_AsnC-type PF13404.1 gi|344209821|ref|YP_004785998.1| - 0.053 13.0 0.0 0.17 11.4 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|344209821|ref|YP_004785998.1| - 0.053 12.9 0.4 0.15 11.5 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|344209821|ref|YP_004785998.1| - 0.074 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1803 PF08820.5 gi|344209821|ref|YP_004785998.1| - 0.098 12.3 0.1 0.21 11.2 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF1803) Sulfolobus_pRN PF05584.6 gi|344209821|ref|YP_004785998.1| - 0.1 12.5 0.0 0.27 11.2 0.0 1.7 2 0 0 2 2 1 0 Sulfolobus plasmid regulatory protein ABC_tran PF00005.22 gi|344209822|ref|YP_004785999.1| - 2.2e-32 112.2 0.0 3.3e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344209822|ref|YP_004785999.1| - 5.6e-09 36.3 0.7 2.9e-07 30.7 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|344209822|ref|YP_004785999.1| - 0.00041 19.7 0.1 0.00075 18.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344209822|ref|YP_004785999.1| - 0.00057 19.3 0.1 0.001 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|344209822|ref|YP_004785999.1| - 0.0037 17.3 0.5 0.038 14.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.3 gi|344209822|ref|YP_004785999.1| - 0.0051 16.4 0.1 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter NB-ARC PF00931.17 gi|344209822|ref|YP_004785999.1| - 0.0055 15.6 0.5 0.0086 14.9 0.4 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.1 gi|344209822|ref|YP_004785999.1| - 0.0056 16.6 0.0 0.0089 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|344209822|ref|YP_004785999.1| - 0.024 14.2 0.1 0.042 13.4 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|344209822|ref|YP_004785999.1| - 0.025 14.2 0.7 0.063 12.9 0.2 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|344209822|ref|YP_004785999.1| - 0.047 13.9 0.0 0.087 13.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|344209822|ref|YP_004785999.1| - 0.058 12.8 0.3 0.089 12.2 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|344209822|ref|YP_004785999.1| - 0.06 12.5 0.3 0.094 11.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|344209822|ref|YP_004785999.1| - 0.068 12.8 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|344209822|ref|YP_004785999.1| - 0.075 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|344209822|ref|YP_004785999.1| - 0.081 12.1 0.2 4.9 6.3 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|344209822|ref|YP_004785999.1| - 0.084 13.1 0.2 0.16 12.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|344209822|ref|YP_004785999.1| - 0.11 11.4 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|344209822|ref|YP_004785999.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase ABC_tran PF00005.22 gi|344209823|ref|YP_004786000.1| - 3.6e-26 92.0 0.0 5e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|344209823|ref|YP_004786000.1| - 1.1e-09 37.7 0.1 2.4e-09 36.6 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.1 gi|344209823|ref|YP_004786000.1| - 0.00011 22.5 0.0 0.00012 22.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|344209823|ref|YP_004786000.1| - 0.0013 18.7 0.3 0.093 12.6 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|344209823|ref|YP_004786000.1| - 0.0017 17.9 0.1 0.0039 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344209823|ref|YP_004786000.1| - 0.0031 16.7 0.0 0.0045 16.2 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344209823|ref|YP_004786000.1| - 0.0086 15.5 0.1 0.015 14.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|344209823|ref|YP_004786000.1| - 0.01 15.7 0.1 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|344209823|ref|YP_004786000.1| - 0.038 13.0 0.0 0.066 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|344209823|ref|YP_004786000.1| - 0.053 13.7 0.2 0.14 12.3 0.0 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|344209823|ref|YP_004786000.1| - 0.074 13.0 0.1 0.11 12.4 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain DSRB PF10781.4 gi|344209823|ref|YP_004786000.1| - 0.21 11.0 0.9 13 5.3 0.0 3.0 3 0 0 3 3 3 0 Dextransucrase DSRB BPD_transp_2 PF02653.11 gi|344209824|ref|YP_004786001.1| - 3.2e-79 265.6 79.2 1.1e-45 155.7 25.6 2.1 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|344209824|ref|YP_004786001.1| - 0.09 12.2 1.3 0.64 9.5 0.0 2.7 3 0 0 3 3 3 0 Cytochrome oxidase complex assembly protein 1 Peripla_BP_6 PF13458.1 gi|344209825|ref|YP_004786002.1| - 6.3e-63 213.1 12.1 7.8e-63 212.9 8.4 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|344209825|ref|YP_004786002.1| - 8.2e-36 123.4 0.4 1e-35 123.2 0.3 1.0 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|344209825|ref|YP_004786002.1| - 2.5e-21 75.8 2.5 3.9e-21 75.2 1.8 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region TAT_signal PF10518.4 gi|344209825|ref|YP_004786002.1| - 0.0029 17.4 3.7 0.0029 17.4 2.6 2.3 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Tail_tube PF10618.4 gi|344209825|ref|YP_004786002.1| - 0.03 14.0 0.2 0.061 13.0 0.1 1.4 1 0 0 1 1 1 0 Phage tail tube protein UCR_Fe-S_N PF10399.4 gi|344209825|ref|YP_004786002.1| - 0.041 13.0 0.8 0.12 11.5 0.5 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Glyco_tran_WecB PF03808.8 gi|344209825|ref|YP_004786002.1| - 0.096 12.0 0.0 0.19 11.1 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family Penicil_amidase PF01804.13 gi|344209826|ref|YP_004786003.1| - 3e-117 393.5 15.8 3.7e-117 393.2 11.0 1.1 1 0 0 1 1 1 1 Penicillin amidase TAT_signal PF10518.4 gi|344209826|ref|YP_004786003.1| - 0.0018 18.1 1.3 0.0018 18.1 0.9 3.4 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence Glyoxalase_4 PF13669.1 gi|344209827|ref|YP_004786004.1| - 3.5e-15 55.9 0.0 5e-15 55.4 0.0 1.3 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|344209827|ref|YP_004786004.1| - 4.9e-05 23.3 0.0 0.00026 20.9 0.0 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|344209827|ref|YP_004786004.1| - 6.7e-05 22.8 0.0 8.2e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|344209827|ref|YP_004786004.1| - 0.00052 20.5 0.1 0.00097 19.7 0.1 1.5 1 1 1 2 2 2 1 Glyoxalase-like domain EthD PF07110.6 gi|344209828|ref|YP_004786005.1| - 1.9e-14 54.3 3.9 6.4e-14 52.6 2.7 1.7 1 1 0 1 1 1 1 EthD domain Dabb PF07876.7 gi|344209828|ref|YP_004786005.1| - 0.0052 17.1 0.0 0.0059 17.0 0.0 1.2 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain MmlI PF09448.5 gi|344209828|ref|YP_004786005.1| - 0.011 15.4 0.1 0.017 14.8 0.0 1.3 1 1 0 1 1 1 0 Methylmuconolactone methyl-isomerase Hemerythrin PF01814.18 gi|344209828|ref|YP_004786005.1| - 0.077 13.1 0.2 0.2 11.8 0.1 1.7 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain IclR PF01614.13 gi|344209829|ref|YP_004786006.1| - 2.5e-28 98.3 0.0 5.8e-28 97.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|344209829|ref|YP_004786006.1| - 7.3e-11 41.4 0.1 1.6e-10 40.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|344209829|ref|YP_004786006.1| - 5.5e-05 22.6 0.1 0.00014 21.3 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|344209829|ref|YP_004786006.1| - 0.00074 19.2 0.1 0.002 17.8 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|344209829|ref|YP_004786006.1| - 0.001 18.3 0.0 0.0034 16.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|344209829|ref|YP_004786006.1| - 0.0024 17.4 0.5 0.0043 16.6 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|344209829|ref|YP_004786006.1| - 0.0047 16.5 0.0 0.019 14.6 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|344209829|ref|YP_004786006.1| - 0.0051 16.4 0.1 0.02 14.5 0.0 2.0 2 0 0 2 2 2 1 HTH domain MarR PF01047.17 gi|344209829|ref|YP_004786006.1| - 0.0087 15.7 0.1 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 MarR family DUF1803 PF08820.5 gi|344209829|ref|YP_004786006.1| - 0.039 13.6 0.2 0.074 12.7 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1803) HTH_45 PF14947.1 gi|344209829|ref|YP_004786006.1| - 0.045 13.5 0.2 0.078 12.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SpoIIID PF12116.3 gi|344209829|ref|YP_004786006.1| - 0.049 13.5 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D Surf_Ag_VNR PF07244.10 gi|344209829|ref|YP_004786006.1| - 0.14 12.6 0.0 0.48 10.8 0.0 1.9 2 0 0 2 2 2 0 Surface antigen variable number repeat HTH_38 PF13936.1 gi|344209829|ref|YP_004786006.1| - 2.9 7.4 4.4 0.73 9.4 0.1 2.3 3 1 0 3 3 3 0 Helix-turn-helix domain ECH PF00378.15 gi|344209830|ref|YP_004786007.1| - 1.2e-65 221.0 0.0 1.5e-65 220.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|344209830|ref|YP_004786007.1| - 1.2e-06 28.6 0.1 6.3e-06 26.3 0.0 1.9 2 0 0 2 2 2 1 2-enoyl-CoA Hydratase C-terminal region 3HCDH_N PF02737.13 gi|344209831|ref|YP_004786008.1| - 4.3e-63 212.2 4.9 5.9e-63 211.7 3.4 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|344209831|ref|YP_004786008.1| - 1.9e-31 108.3 0.1 9.9e-31 106.0 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|344209831|ref|YP_004786008.1| - 3.3e-08 33.3 0.2 6.2e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.9 gi|344209831|ref|YP_004786008.1| - 7e-06 25.5 0.4 1.1e-05 24.9 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.10 gi|344209831|ref|YP_004786008.1| - 0.00015 21.6 2.1 0.00015 21.6 1.4 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|344209831|ref|YP_004786008.1| - 0.026 14.9 7.6 0.059 13.8 2.7 2.6 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|344209831|ref|YP_004786008.1| - 0.033 13.6 0.1 0.051 13.0 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA MORN PF02493.15 gi|344209831|ref|YP_004786008.1| - 0.043 13.5 0.1 0.096 12.4 0.1 1.6 1 0 0 1 1 1 0 MORN repeat Saccharop_dh PF03435.13 gi|344209831|ref|YP_004786008.1| - 0.084 11.8 0.5 0.16 10.9 0.3 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NmrA PF05368.8 gi|344209831|ref|YP_004786008.1| - 0.11 11.6 0.3 0.17 11.0 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family Thiolase_N PF00108.18 gi|344209832|ref|YP_004786009.1| - 2.2e-64 217.0 0.4 4.4e-63 212.7 0.4 2.3 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|344209832|ref|YP_004786009.1| - 1.2e-47 160.3 0.1 2.3e-47 159.4 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|344209832|ref|YP_004786009.1| - 0.001 18.9 0.0 0.0022 17.9 0.0 1.6 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF35_N PF12172.3 gi|344209833|ref|YP_004786010.1| - 2.2e-09 36.9 3.0 1.4e-08 34.3 2.6 2.0 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|344209833|ref|YP_004786010.1| - 6.9e-07 29.4 1.1 1.9e-06 28.0 0.8 1.8 1 0 0 1 1 1 1 DUF35 OB-fold domain ACP_syn_III_C PF08541.5 gi|344209833|ref|YP_004786010.1| - 0.051 13.5 0.3 0.12 12.4 0.2 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.18 gi|344209834|ref|YP_004786011.1| - 2.2e-11 43.2 1.0 3.8e-11 42.4 0.1 1.8 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|344209834|ref|YP_004786011.1| - 4.3e-10 39.0 0.3 1.2e-09 37.5 0.0 1.9 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|344209834|ref|YP_004786011.1| - 6.3e-08 32.3 3.3 1.5e-07 31.1 2.3 1.6 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|344209834|ref|YP_004786011.1| - 0.0088 15.6 1.1 0.088 12.4 0.2 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMP-binding_C_2 PF14535.1 gi|344209835|ref|YP_004786012.1| - 1e-20 73.5 0.0 2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|344209835|ref|YP_004786012.1| - 2.2e-17 62.6 0.3 4.1e-17 61.6 0.2 1.5 1 1 0 1 1 1 1 AMP-binding enzyme LuxE PF04443.7 gi|344209835|ref|YP_004786012.1| - 1.7e-06 27.0 0.0 0.00032 19.5 0.0 2.1 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE 4HBT PF03061.17 gi|344209836|ref|YP_004786013.1| - 2.1e-15 56.6 0.5 3.7e-15 55.7 0.3 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|344209836|ref|YP_004786013.1| - 3e-09 36.9 0.1 3.9e-09 36.5 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|344209836|ref|YP_004786013.1| - 0.0012 18.6 0.1 0.0014 18.4 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily PS-DH PF14765.1 gi|344209836|ref|YP_004786013.1| - 0.015 14.4 0.1 0.016 14.3 0.1 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase MaoC_dehydratas PF01575.14 gi|344209836|ref|YP_004786013.1| - 0.046 13.1 0.0 0.069 12.5 0.0 1.2 1 0 0 1 1 1 0 MaoC like domain MaoC_dehydratas PF01575.14 gi|344209837|ref|YP_004786014.1| - 2.7e-16 59.0 0.1 3.2e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344209837|ref|YP_004786014.1| - 0.00042 20.1 0.6 0.0013 18.5 0.4 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Aldedh PF00171.17 gi|344209838|ref|YP_004786015.1| - 6.2e-173 575.3 3.1 7e-173 575.2 2.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family RuBisCO_large_N PF02788.11 gi|344209838|ref|YP_004786015.1| - 0.12 12.1 0.3 0.33 10.6 0.2 1.7 1 0 0 1 1 1 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain Lar_restr_allev PF14354.1 gi|344209839|ref|YP_004786016.1| - 0.019 15.2 3.6 0.024 14.9 2.5 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|344209839|ref|YP_004786016.1| - 0.028 13.7 0.6 0.028 13.7 0.4 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|344209839|ref|YP_004786016.1| - 0.051 13.8 4.8 4 7.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-CHCC PF10276.4 gi|344209839|ref|YP_004786016.1| - 0.099 12.5 0.5 0.099 12.5 0.3 2.0 2 1 0 2 2 2 0 Zinc-finger domain Zn-ribbon_8 PF09723.5 gi|344209839|ref|YP_004786016.1| - 0.11 12.4 0.2 0.11 12.4 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|344209839|ref|YP_004786016.1| - 0.14 12.2 4.4 0.63 10.0 0.2 2.2 2 0 0 2 2 2 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|344209839|ref|YP_004786016.1| - 0.16 11.6 6.3 0.21 11.2 4.4 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-MYND PF01753.13 gi|344209839|ref|YP_004786016.1| - 0.19 11.6 5.1 0.41 10.5 3.5 1.6 1 1 0 1 1 1 0 MYND finger Nudix_N_2 PF14803.1 gi|344209839|ref|YP_004786016.1| - 0.61 9.8 7.1 6.2 6.6 2.8 2.6 1 1 0 1 1 1 0 Nudix N-terminal zf-C3HC4_2 PF13923.1 gi|344209839|ref|YP_004786016.1| - 0.64 10.1 6.2 24 5.0 5.3 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ISL3 PF14690.1 gi|344209839|ref|YP_004786016.1| - 0.77 9.8 6.5 0.49 10.4 2.9 1.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.8 gi|344209839|ref|YP_004786016.1| - 1.4 8.4 8.8 2.3 7.8 6.1 1.4 1 1 0 1 1 1 0 InsA N-terminal domain Prim_Zn_Ribbon PF08273.7 gi|344209839|ref|YP_004786016.1| - 1.6 8.9 8.1 2.7 8.1 5.6 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Arc_trans_TRASH PF08394.5 gi|344209839|ref|YP_004786016.1| - 2.5 8.3 7.0 3.9 7.6 1.1 2.2 2 0 0 2 2 2 0 Archaeal TRASH domain zf-C2H2 PF00096.21 gi|344209839|ref|YP_004786016.1| - 2.8 8.4 5.7 17 6.0 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-TFIIB PF13453.1 gi|344209839|ref|YP_004786016.1| - 3 7.1 6.0 4.9 6.4 4.2 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|344209839|ref|YP_004786016.1| - 3 7.7 9.1 6.5 6.6 6.3 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|344209839|ref|YP_004786016.1| - 3 7.8 8.7 0.43 10.5 0.7 2.4 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C2H2_4 PF13894.1 gi|344209839|ref|YP_004786016.1| - 4 7.9 7.4 6.2 7.3 0.8 2.4 2 1 0 2 2 2 0 C2H2-type zinc finger DUF59 PF01883.14 gi|344209840|ref|YP_004786017.1| - 1.1e-21 76.5 0.2 1.5e-21 76.1 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 PaaA_PaaC PF05138.7 gi|344209841|ref|YP_004786018.1| - 1.8e-59 200.8 1.6 2.3e-59 200.5 1.1 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein MiaE_2 PF13794.1 gi|344209841|ref|YP_004786018.1| - 0.0033 16.9 0.6 0.0098 15.4 0.4 1.8 1 1 0 1 1 1 1 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like PaaB PF06243.6 gi|344209842|ref|YP_004786019.1| - 5.6e-43 144.9 3.9 1.7e-24 85.7 0.5 2.0 1 1 1 2 2 2 2 Phenylacetic acid degradation B IF-2 PF11987.3 gi|344209842|ref|YP_004786019.1| - 0.06 13.2 0.1 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Translation-initiation factor 2 UPF0150 PF03681.10 gi|344209842|ref|YP_004786019.1| - 0.086 12.4 0.1 0.24 11.0 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) PaaA_PaaC PF05138.7 gi|344209843|ref|YP_004786020.1| - 8.4e-71 238.0 0.3 9.6e-71 237.8 0.2 1.0 1 0 0 1 1 1 1 Phenylacetic acid catabolic protein HTH_10 PF04967.7 gi|344209844|ref|YP_004786021.1| - 4.3e-17 61.4 0.1 7.5e-17 60.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|344209844|ref|YP_004786021.1| - 0.0038 16.8 0.1 0.018 14.6 0.1 2.1 2 1 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|344209844|ref|YP_004786021.1| - 0.03 13.8 0.1 0.074 12.5 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|344209844|ref|YP_004786021.1| - 0.038 13.3 0.0 0.12 11.7 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|344209844|ref|YP_004786021.1| - 0.12 11.6 0.2 0.57 9.5 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 Sigma70_r3 PF04539.11 gi|344209844|ref|YP_004786021.1| - 0.13 12.1 0.0 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 BON PF04972.12 gi|344209844|ref|YP_004786021.1| - 0.15 11.8 0.3 0.28 10.9 0.2 1.4 1 0 0 1 1 1 0 BON domain ECH PF00378.15 gi|344209845|ref|YP_004786022.1| - 8.1e-50 169.2 0.6 9.6e-50 168.9 0.4 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Amidohydro_2 PF04909.9 gi|344209846|ref|YP_004786023.1| - 1.3e-48 165.9 0.7 1.6e-48 165.6 0.5 1.2 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|344209846|ref|YP_004786023.1| - 0.015 14.5 0.0 0.15 11.1 0.0 2.1 1 1 0 1 1 1 0 TatD related DNase HpcH_HpaI PF03328.9 gi|344209847|ref|YP_004786024.1| - 1.2e-54 184.5 2.4 1.6e-54 184.1 1.7 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|344209847|ref|YP_004786024.1| - 1.6e-14 53.4 0.0 2.5e-08 33.1 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold adh_short PF00106.20 gi|344209847|ref|YP_004786024.1| - 0.091 12.6 3.5 1.9 8.4 0.3 2.7 1 1 1 2 2 2 0 short chain dehydrogenase Methyltransf_11 PF08241.7 gi|344209848|ref|YP_004786025.1| - 2.4e-16 60.0 0.0 4.6e-16 59.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|344209848|ref|YP_004786025.1| - 1.3e-09 37.9 0.0 1.7e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|344209848|ref|YP_004786025.1| - 2e-09 37.2 0.0 3e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|344209848|ref|YP_004786025.1| - 1.7e-08 34.6 0.0 3.7e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|344209848|ref|YP_004786025.1| - 2.2e-06 28.0 0.0 4.1e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|344209848|ref|YP_004786025.1| - 8.3e-06 26.3 0.0 3.5e-05 24.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|344209848|ref|YP_004786025.1| - 1.1e-05 24.7 0.0 2.1e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|344209848|ref|YP_004786025.1| - 0.00011 22.1 0.4 0.00037 20.5 0.3 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|344209848|ref|YP_004786025.1| - 0.00013 21.6 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|344209848|ref|YP_004786025.1| - 0.06 12.3 0.0 0.083 11.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|344209848|ref|YP_004786025.1| - 0.067 12.5 0.2 0.26 10.6 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase small domain MaoC_dehydratas PF01575.14 gi|344209849|ref|YP_004786026.1| - 2.4e-24 85.0 0.2 3.2e-24 84.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344209849|ref|YP_004786026.1| - 0.0018 18.0 0.5 0.0067 16.2 0.4 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Wzt_C PF14524.1 gi|344209849|ref|YP_004786026.1| - 0.12 12.1 0.0 0.34 10.6 0.0 1.7 1 1 0 1 1 1 0 Wzt C-terminal domain OB_RNB PF08206.6 gi|344209849|ref|YP_004786026.1| - 0.12 11.8 0.1 0.28 10.7 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease B OB domain Carboxyl_trans PF01039.17 gi|344209850|ref|YP_004786027.1| - 2.8e-132 441.5 0.0 3.5e-132 441.2 0.0 1.1 1 0 0 1 1 1 1 Carboxyl transferase domain CPSase_L_D2 PF02786.12 gi|344209851|ref|YP_004786028.1| - 1.2e-75 253.4 0.2 1.2e-75 253.4 0.2 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|344209851|ref|YP_004786028.1| - 2.2e-41 140.4 0.1 5.8e-41 139.0 0.1 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|344209851|ref|YP_004786028.1| - 1.3e-36 124.8 0.0 3.8e-36 123.3 0.0 1.9 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|344209851|ref|YP_004786028.1| - 4.2e-17 62.4 0.2 8.9e-17 61.4 0.2 1.5 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl PF00364.17 gi|344209851|ref|YP_004786028.1| - 8.5e-17 60.5 3.7 2.7e-16 58.9 2.2 2.2 2 0 0 2 2 2 1 Biotin-requiring enzyme ATPgrasp_Ter PF15632.1 gi|344209851|ref|YP_004786028.1| - 4.9e-15 55.1 0.0 1.5e-14 53.5 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|344209851|ref|YP_004786028.1| - 5.9e-10 38.8 0.0 1.2e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|344209851|ref|YP_004786028.1| - 2.5e-09 36.7 0.2 5e-09 35.7 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|344209851|ref|YP_004786028.1| - 1e-06 28.3 0.2 0.0044 16.6 0.1 2.9 1 1 1 2 2 2 2 Biotin-lipoyl like GARS_A PF01071.14 gi|344209851|ref|YP_004786028.1| - 3.5e-05 23.4 0.1 7.6e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_3 PF02655.9 gi|344209851|ref|YP_004786028.1| - 0.0002 21.2 0.0 0.00033 20.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|344209851|ref|YP_004786028.1| - 0.0039 16.6 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 2 RimK-like ATP-grasp domain HlyD PF00529.15 gi|344209851|ref|YP_004786028.1| - 0.0066 15.8 0.2 0.14 11.4 0.1 2.4 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|344209851|ref|YP_004786028.1| - 0.019 15.2 0.5 7.1 7.0 0.0 2.9 2 0 0 2 2 2 0 HlyD family secretion protein Acyl-CoA_dh_1 PF00441.19 gi|344209852|ref|YP_004786029.1| - 5.9e-30 104.3 0.6 9.4e-30 103.7 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|344209852|ref|YP_004786029.1| - 1.3e-22 80.5 3.1 2.6e-22 79.5 2.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|344209852|ref|YP_004786029.1| - 1.4e-17 62.8 1.8 1.5e-17 62.7 0.2 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|344209852|ref|YP_004786029.1| - 4.7e-15 56.0 1.4 9.3e-15 55.0 1.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|344209853|ref|YP_004786030.1| - 6.4e-89 298.2 0.0 8.1e-89 297.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|344209853|ref|YP_004786030.1| - 9.3e-18 64.9 2.7 1.2e-17 64.6 0.7 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain UbiD PF01977.11 gi|344209854|ref|YP_004786031.1| - 5.1e-17 61.4 0.0 2.1e-16 59.3 0.0 2.0 1 1 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD PF01977.11 gi|344209855|ref|YP_004786032.1| - 1.6e-101 339.6 0.0 2.1e-101 339.3 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Peptidase_M41 PF01434.13 gi|344209856|ref|YP_004786033.1| - 0.19 11.2 1.0 0.21 11.0 0.1 1.5 2 0 0 2 2 2 0 Peptidase family M41 MDMPI_N PF11716.3 gi|344209856|ref|YP_004786033.1| - 0.23 11.8 4.3 0.64 10.4 0.9 2.1 2 0 0 2 2 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain ABC1 PF03109.11 gi|344209857|ref|YP_004786034.1| - 3.3e-19 69.0 0.0 6.3e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|344209857|ref|YP_004786034.1| - 0.0048 16.6 7.2 0.014 15.1 1.5 3.4 1 1 2 3 3 3 1 Phosphotransferase enzyme family THDPS_N_2 PF14805.1 gi|344209857|ref|YP_004786034.1| - 0.079 12.8 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal DUF4010 PF13194.1 gi|344209858|ref|YP_004786035.1| - 1.2e-69 233.8 15.2 1.2e-69 233.8 10.6 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|344209858|ref|YP_004786035.1| - 9.3e-07 28.7 8.2 9.3e-07 28.7 5.7 3.6 2 2 2 4 4 4 1 MgtC family E1-E2_ATPase PF00122.15 gi|344209859|ref|YP_004786036.1| - 1.2e-60 204.4 0.2 2.3e-60 203.4 0.1 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|344209859|ref|YP_004786036.1| - 8.7e-44 150.4 11.2 9.3e-44 150.3 5.6 2.6 3 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344209859|ref|YP_004786036.1| - 1.5e-13 51.3 0.0 4.4e-13 49.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|344209859|ref|YP_004786036.1| - 2.2e-13 50.1 0.3 1.7e-12 47.2 0.0 2.6 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|344209859|ref|YP_004786036.1| - 0.0012 18.5 0.9 0.021 14.4 0.4 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.7 gi|344209860|ref|YP_004786037.1| - 4.5e-16 58.1 0.3 1.4e-15 56.5 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.1 gi|344209860|ref|YP_004786037.1| - 1.9e-05 24.1 0.1 0.00017 21.0 0.0 2.4 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|344209860|ref|YP_004786037.1| - 7.9e-05 22.2 0.1 0.00032 20.3 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|344209860|ref|YP_004786037.1| - 0.00076 19.2 0.2 0.0052 16.5 0.0 2.6 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|344209860|ref|YP_004786037.1| - 0.0031 17.0 0.0 0.0077 15.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_24 PF13412.1 gi|344209860|ref|YP_004786037.1| - 0.0073 15.6 0.0 0.018 14.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|344209860|ref|YP_004786037.1| - 0.029 13.9 0.1 0.17 11.5 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_psq PF05225.11 gi|344209860|ref|YP_004786037.1| - 0.039 13.4 0.5 0.1 12.1 0.0 2.0 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_5 PF01022.15 gi|344209860|ref|YP_004786037.1| - 0.06 13.0 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|344209860|ref|YP_004786037.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|344209860|ref|YP_004786037.1| - 0.12 12.0 0.0 0.56 9.9 0.0 2.1 2 0 0 2 2 2 0 MarR family Cdc6_C PF09079.6 gi|344209861|ref|YP_004786038.1| - 6.1e-17 61.1 0.0 1.7e-16 59.7 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|344209861|ref|YP_004786038.1| - 2.2e-15 57.1 0.9 1.2e-14 54.7 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|344209861|ref|YP_004786038.1| - 3.3e-12 46.6 0.0 2.1e-11 44.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|344209861|ref|YP_004786038.1| - 0.00013 21.8 0.0 0.00033 20.4 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|344209861|ref|YP_004786038.1| - 0.00016 21.8 0.0 0.00037 20.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.1 gi|344209861|ref|YP_004786038.1| - 0.00061 18.5 0.1 0.38 9.3 0.1 2.2 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|344209861|ref|YP_004786038.1| - 0.00063 18.7 0.0 0.0011 17.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|344209861|ref|YP_004786038.1| - 0.0011 18.5 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|344209861|ref|YP_004786038.1| - 0.0044 16.7 0.3 0.18 11.5 0.0 3.1 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|344209861|ref|YP_004786038.1| - 0.0089 15.6 0.0 0.024 14.2 0.0 1.9 1 1 0 1 1 1 1 NACHT domain CbiA PF01656.18 gi|344209861|ref|YP_004786038.1| - 0.0093 15.3 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.10 gi|344209861|ref|YP_004786038.1| - 0.012 15.3 0.0 0.026 14.2 0.0 1.6 1 1 0 1 1 1 0 NTPase Sigma54_activat PF00158.21 gi|344209861|ref|YP_004786038.1| - 0.012 15.1 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|344209861|ref|YP_004786038.1| - 0.012 15.9 0.0 0.038 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|344209861|ref|YP_004786038.1| - 0.015 15.4 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.1 gi|344209861|ref|YP_004786038.1| - 0.041 14.6 2.1 0.35 11.7 1.5 2.4 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|344209861|ref|YP_004786038.1| - 0.063 12.2 0.1 1.9 7.4 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain DUF258 PF03193.11 gi|344209861|ref|YP_004786038.1| - 0.064 12.4 0.0 0.1 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF35 PF01796.12 gi|344209862|ref|YP_004786039.1| - 1.8e-17 63.2 1.3 2.8e-17 62.7 0.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|344209862|ref|YP_004786039.1| - 5.7e-13 48.3 2.8 5.7e-13 48.3 2.0 1.8 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_C PF02803.13 gi|344209863|ref|YP_004786040.1| - 1.3e-07 31.0 0.4 3.5e-07 29.6 0.3 1.8 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|344209863|ref|YP_004786040.1| - 2.4e-07 30.0 0.4 1.7e-06 27.2 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|344209863|ref|YP_004786040.1| - 2.3e-05 24.0 0.3 2.3e-05 24.0 0.2 2.1 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|344209863|ref|YP_004786040.1| - 0.037 13.6 3.3 1.5 8.5 0.2 2.8 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Oxidored_FMN PF00724.15 gi|344209864|ref|YP_004786041.1| - 6.2e-68 229.2 0.0 7.3e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family His_biosynth PF00977.16 gi|344209864|ref|YP_004786041.1| - 0.0031 16.8 0.0 0.0054 16.0 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|344209864|ref|YP_004786041.1| - 0.099 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase SBP_bac_8 PF13416.1 gi|344209865|ref|YP_004786042.1| - 1.6e-39 136.3 1.6 2e-39 136.0 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|344209865|ref|YP_004786042.1| - 2.4e-27 96.4 0.4 3.1e-27 96.1 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|344209865|ref|YP_004786042.1| - 0.0079 15.8 0.2 0.23 11.0 0.0 2.9 2 1 1 4 4 4 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|344209865|ref|YP_004786042.1| - 0.016 15.1 0.7 0.016 15.1 0.5 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence LGFP PF08310.6 gi|344209865|ref|YP_004786042.1| - 0.024 14.2 0.1 0.065 12.8 0.1 1.8 1 0 0 1 1 1 0 LGFP repeat BPD_transp_1 PF00528.17 gi|344209866|ref|YP_004786043.1| - 2.9e-13 49.7 16.8 2.9e-13 49.7 11.6 2.3 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF267 PF03268.9 gi|344209866|ref|YP_004786043.1| - 1.7 7.3 6.8 2.9 6.6 0.1 2.9 1 1 2 3 3 3 0 Caenorhabditis protein of unknown function, DUF267 Baculo_11_kDa PF06143.6 gi|344209866|ref|YP_004786043.1| - 2.8 7.3 5.3 0.86 9.0 0.0 2.4 2 0 0 2 2 2 0 Baculovirus 11 kDa family BPD_transp_1 PF00528.17 gi|344209867|ref|YP_004786044.1| - 7.8e-12 45.0 18.4 7.8e-12 45.0 12.7 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.1 gi|344209867|ref|YP_004786044.1| - 0.031 14.2 0.0 0.062 13.3 0.0 1.5 1 0 0 1 1 1 0 IS66 C-terminal element Adeno_E3_CR2 PF02439.10 gi|344209867|ref|YP_004786044.1| - 1.4 8.5 5.3 9.2 5.9 0.6 2.7 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 ABC_tran PF00005.22 gi|344209868|ref|YP_004786045.1| - 1.2e-31 109.8 0.0 1.8e-31 109.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|344209868|ref|YP_004786045.1| - 4e-13 49.1 0.3 4.6e-12 45.7 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|344209868|ref|YP_004786045.1| - 1.9e-06 28.0 0.0 0.017 15.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|344209868|ref|YP_004786045.1| - 7e-06 26.0 0.2 8.7e-05 22.5 0.0 2.8 3 0 0 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|344209868|ref|YP_004786045.1| - 0.0013 18.0 0.0 0.0044 16.2 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|344209868|ref|YP_004786045.1| - 0.0038 16.6 0.2 0.0073 15.7 0.1 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|344209868|ref|YP_004786045.1| - 0.0043 17.0 0.2 0.0082 16.1 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|344209868|ref|YP_004786045.1| - 0.0059 17.4 0.6 0.018 15.8 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|344209868|ref|YP_004786045.1| - 0.02 15.0 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|344209868|ref|YP_004786045.1| - 0.035 13.6 0.0 0.076 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|344209868|ref|YP_004786045.1| - 0.037 13.0 0.0 0.16 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|344209868|ref|YP_004786045.1| - 0.053 12.7 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|344209868|ref|YP_004786045.1| - 0.068 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|344209868|ref|YP_004786045.1| - 0.072 12.4 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|344209868|ref|YP_004786045.1| - 0.079 11.6 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_18 PF13238.1 gi|344209868|ref|YP_004786045.1| - 0.086 13.1 0.0 0.15 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|344209868|ref|YP_004786045.1| - 0.11 12.9 0.1 0.49 10.8 0.0 2.1 2 0 0 2 2 1 0 Miro-like protein AAA_33 PF13671.1 gi|344209868|ref|YP_004786045.1| - 0.14 12.0 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain GDPD PF03009.12 gi|344209869|ref|YP_004786046.1| - 1.1e-23 84.0 0.0 4.5e-23 82.0 0.0 1.9 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family TIM-br_sig_trns PF09370.5 gi|344209869|ref|YP_004786046.1| - 0.017 14.1 0.0 0.05 12.6 0.0 1.6 2 0 0 2 2 2 0 TIM-barrel signal transduction protein NMO PF03060.10 gi|344209869|ref|YP_004786046.1| - 0.023 13.8 0.0 0.043 12.9 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase Hydrolase_6 PF13344.1 gi|344209870|ref|YP_004786047.1| - 1.2e-25 89.3 0.0 2.1e-25 88.5 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|344209870|ref|YP_004786047.1| - 1.4e-21 75.9 0.1 2.5e-20 71.9 0.0 2.6 2 1 1 3 3 3 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|344209870|ref|YP_004786047.1| - 1.5e-11 45.0 0.3 2.8e-11 44.2 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|344209870|ref|YP_004786047.1| - 3.7e-09 37.0 0.0 5.4e-06 26.7 0.0 3.0 3 1 1 4 4 4 2 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344209870|ref|YP_004786047.1| - 0.0014 18.7 0.1 0.0024 18.0 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|344209870|ref|YP_004786047.1| - 0.0029 16.9 0.0 0.0064 15.8 0.0 1.6 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.7 gi|344209870|ref|YP_004786047.1| - 0.023 14.2 0.2 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF4010 PF13194.1 gi|344209871|ref|YP_004786048.1| - 4.3e-49 166.6 20.1 4.3e-49 166.6 13.9 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|344209871|ref|YP_004786048.1| - 7.2e-11 42.0 8.1 7.2e-11 42.0 5.6 3.7 3 1 0 3 3 3 2 MgtC family Phosphonate-bd PF12974.2 gi|344209872|ref|YP_004786049.1| - 2e-57 194.3 0.0 2.7e-57 193.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|344209872|ref|YP_004786049.1| - 0.0094 15.2 0.0 0.032 13.4 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|344209872|ref|YP_004786049.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 NMT1/THI5 like TAT_signal PF10518.4 gi|344209872|ref|YP_004786049.1| - 0.025 14.5 0.0 0.051 13.6 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Myco_19_kDa PF05481.7 gi|344209872|ref|YP_004786049.1| - 0.095 12.5 5.5 0.17 11.6 3.8 1.3 1 0 0 1 1 1 0 Mycobacterium 19 kDa lipoprotein antigen ABC_tran PF00005.22 gi|344209873|ref|YP_004786050.1| - 5.4e-37 127.1 0.0 7.4e-37 126.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|344209873|ref|YP_004786050.1| - 6.3e-11 42.7 0.0 3.9e-05 23.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|344209873|ref|YP_004786050.1| - 9e-06 25.8 0.0 0.0035 17.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|344209873|ref|YP_004786050.1| - 2.2e-05 25.2 0.1 3.6e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|344209873|ref|YP_004786050.1| - 3.3e-05 23.3 0.1 6.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|344209873|ref|YP_004786050.1| - 5.5e-05 23.2 0.9 0.00036 20.5 0.6 2.1 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|344209873|ref|YP_004786050.1| - 0.00018 20.7 0.1 0.00027 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|344209873|ref|YP_004786050.1| - 0.00049 19.9 0.0 0.00081 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|344209873|ref|YP_004786050.1| - 0.0006 20.1 0.0 0.0011 19.3 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|344209873|ref|YP_004786050.1| - 0.00066 19.3 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344209873|ref|YP_004786050.1| - 0.0007 18.8 0.2 0.29 10.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|344209873|ref|YP_004786050.1| - 0.0009 18.7 0.1 0.005 16.3 0.0 2.0 1 1 1 2 2 2 1 AAA-like domain MobB PF03205.9 gi|344209873|ref|YP_004786050.1| - 0.0016 18.1 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|344209873|ref|YP_004786050.1| - 0.0017 18.6 0.1 0.0061 16.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|344209873|ref|YP_004786050.1| - 0.0025 16.9 0.6 0.63 9.0 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.1 gi|344209873|ref|YP_004786050.1| - 0.0068 16.2 0.2 0.068 13.0 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|344209873|ref|YP_004786050.1| - 0.0086 15.8 0.1 0.02 14.6 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|344209873|ref|YP_004786050.1| - 0.012 15.3 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|344209873|ref|YP_004786050.1| - 0.021 14.6 0.5 0.16 11.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|344209873|ref|YP_004786050.1| - 0.022 13.9 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.18 gi|344209873|ref|YP_004786050.1| - 0.024 14.5 0.0 0.053 13.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|344209873|ref|YP_004786050.1| - 0.025 14.4 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|344209873|ref|YP_004786050.1| - 0.025 15.0 0.0 0.066 13.7 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein NB-ARC PF00931.17 gi|344209873|ref|YP_004786050.1| - 0.029 13.2 0.1 0.045 12.5 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain ArgK PF03308.11 gi|344209873|ref|YP_004786050.1| - 0.033 12.9 0.1 0.054 12.2 0.1 1.2 1 0 0 1 1 1 0 ArgK protein CbiA PF01656.18 gi|344209873|ref|YP_004786050.1| - 0.043 13.2 0.0 0.081 12.3 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.1 gi|344209873|ref|YP_004786050.1| - 0.043 13.7 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|344209873|ref|YP_004786050.1| - 0.059 13.0 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.12 gi|344209873|ref|YP_004786050.1| - 0.071 12.6 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_ATPase PF09818.4 gi|344209873|ref|YP_004786050.1| - 0.082 11.4 0.2 3.1 6.2 0.0 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.10 gi|344209873|ref|YP_004786050.1| - 0.11 11.0 0.2 0.26 9.9 0.0 1.6 2 1 0 2 2 2 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|344209873|ref|YP_004786050.1| - 0.12 11.7 0.0 0.88 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|344209873|ref|YP_004786050.1| - 0.13 11.9 0.1 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase AAA_PrkA PF08298.6 gi|344209873|ref|YP_004786050.1| - 0.14 10.7 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain BPD_transp_1 PF00528.17 gi|344209874|ref|YP_004786051.1| - 1.2e-15 57.5 8.3 1.2e-15 57.5 5.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MHYT PF03707.11 gi|344209874|ref|YP_004786051.1| - 0.61 10.2 0.1 0.61 10.2 0.0 3.4 3 1 1 4 4 4 0 Bacterial signalling protein N terminal repeat BPD_transp_1 PF00528.17 gi|344209875|ref|YP_004786052.1| - 1.7e-16 60.2 17.3 1.7e-16 60.2 12.0 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SNF2_N PF00176.18 gi|344209877|ref|YP_004786054.1| - 3.1e-26 91.8 0.0 3.6e-24 85.1 0.0 2.5 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|344209877|ref|YP_004786054.1| - 1.2e-18 66.7 0.0 2.8e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|344209877|ref|YP_004786054.1| - 1.5e-08 34.7 0.0 5.4e-08 32.8 0.0 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|344209877|ref|YP_004786054.1| - 3.2e-06 26.7 0.0 1e-05 25.1 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_4 PF13871.1 gi|344209877|ref|YP_004786054.1| - 3.7e-05 23.2 3.3 0.00044 19.7 0.0 2.8 3 0 0 3 3 3 1 Helicase_C-like DUF2075 PF09848.4 gi|344209877|ref|YP_004786054.1| - 0.024 13.6 2.3 0.064 12.2 0.0 2.7 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.1 gi|344209877|ref|YP_004786054.1| - 0.078 11.7 0.6 0.28 9.8 0.4 1.7 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Fib_alpha PF08702.5 gi|344209877|ref|YP_004786054.1| - 4.8 7.3 8.1 3.1 7.8 2.9 2.6 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Methyltransf_26 PF13659.1 gi|344209878|ref|YP_004786055.1| - 1.8e-20 73.1 0.0 3e-19 69.1 0.0 2.8 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|344209878|ref|YP_004786055.1| - 8.4e-08 31.6 0.0 0.00057 19.0 0.0 3.2 3 0 0 3 3 3 2 N-6 DNA Methylase Eco57I PF07669.6 gi|344209878|ref|YP_004786055.1| - 0.00052 20.3 0.0 0.0012 19.1 0.0 1.6 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|344209878|ref|YP_004786055.1| - 0.001 18.6 0.0 0.0029 17.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|344209878|ref|YP_004786055.1| - 0.011 15.2 0.0 0.58 9.7 0.0 2.6 2 1 0 2 2 2 0 Putative RNA methylase family UPF0020 CCDC-167 PF15188.1 gi|344209878|ref|YP_004786055.1| - 2.1 8.3 7.9 0.93 9.4 0.9 3.3 3 0 0 3 3 3 0 Coiled-coil domain-containing protein 167 PglZ PF08665.7 gi|344209879|ref|YP_004786056.1| - 1.7e-08 34.3 0.0 4.9e-08 32.8 0.0 1.8 2 0 0 2 2 2 1 PglZ domain UDPG_MGDP_dh_C PF03720.10 gi|344209880|ref|YP_004786057.1| - 0.019 15.0 0.0 0.043 13.9 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Methyltransf_26 PF13659.1 gi|344209881|ref|YP_004786058.1| - 3.3e-21 75.5 0.0 9.3e-21 74.0 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|344209881|ref|YP_004786058.1| - 3.4e-10 39.4 0.0 4.2e-05 22.7 0.0 3.2 3 0 0 3 3 3 2 N-6 DNA Methylase Eco57I PF07669.6 gi|344209881|ref|YP_004786058.1| - 0.0014 18.9 0.0 0.0037 17.5 0.0 1.7 1 0 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|344209881|ref|YP_004786058.1| - 0.0015 18.1 0.0 0.69 9.4 0.0 3.1 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|344209881|ref|YP_004786058.1| - 0.0029 17.2 0.0 0.011 15.3 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain Spore_III_AF PF09581.5 gi|344209881|ref|YP_004786058.1| - 0.23 11.3 5.8 1.7 8.4 0.3 2.9 2 0 0 2 2 2 0 Stage III sporulation protein AF (Spore_III_AF) IncA PF04156.9 gi|344209881|ref|YP_004786058.1| - 5.7 6.4 20.7 1.7 8.2 2.1 3.8 3 0 0 3 3 3 0 IncA protein Chloroa_b-bind PF00504.16 gi|344209882|ref|YP_004786059.1| - 0.027 14.7 0.7 0.029 14.6 0.5 1.0 1 0 0 1 1 1 0 Chlorophyll A-B binding protein DUF91 PF01939.11 gi|344209883|ref|YP_004786060.1| - 4.3e-06 26.0 0.1 7.9e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF91 AFG1_ATPase PF03969.11 gi|344209884|ref|YP_004786061.1| - 0.01 14.7 0.0 0.021 13.6 0.0 1.4 1 0 0 1 1 1 1 AFG1-like ATPase DUF1415 PF07209.7 gi|344209884|ref|YP_004786061.1| - 0.076 12.7 0.0 0.22 11.2 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1415) HEPN PF05168.9 gi|344209884|ref|YP_004786061.1| - 0.093 12.6 0.1 0.67 9.8 0.0 2.5 2 0 0 2 2 2 0 HEPN domain AAA_22 PF13401.1 gi|344209884|ref|YP_004786061.1| - 0.14 12.3 0.1 20 5.3 0.0 3.7 2 1 1 3 3 3 0 AAA domain DUF1788 PF08747.6 gi|344209885|ref|YP_004786062.1| - 5e-12 45.7 0.0 6.7e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) EIIA-man PF03610.11 gi|344209885|ref|YP_004786062.1| - 0.019 15.0 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 PTS system fructose IIA component ABC_tran PF00005.22 gi|344209886|ref|YP_004786063.1| - 0.058 13.6 0.0 0.2 11.9 0.0 1.9 1 0 0 1 1 1 0 ABC transporter DUF1819 PF08849.6 gi|344209887|ref|YP_004786064.1| - 1e-07 31.5 0.0 1.9e-07 30.6 0.0 1.4 2 0 0 2 2 2 1 Putative inner membrane protein (DUF1819) HTH_32 PF13565.1 gi|344209887|ref|YP_004786064.1| - 0.11 13.2 2.7 48 4.8 0.0 3.6 3 1 1 4 4 4 0 Homeodomain-like domain ParA PF10609.4 gi|344209888|ref|YP_004786065.1| - 3.9e-25 87.5 0.0 8.1e-25 86.5 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|344209888|ref|YP_004786065.1| - 1.6e-18 66.8 0.0 2.7e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|344209888|ref|YP_004786065.1| - 1.4e-10 41.2 0.0 1.9e-09 37.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF59 PF01883.14 gi|344209888|ref|YP_004786065.1| - 1.3e-09 37.8 3.4 1.3e-09 37.8 2.4 3.0 3 0 0 3 3 3 1 Domain of unknown function DUF59 DUF2249 PF10006.4 gi|344209888|ref|YP_004786065.1| - 8.8e-09 34.8 0.0 1.9e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) VirC1 PF07015.6 gi|344209888|ref|YP_004786065.1| - 2.3e-06 26.8 0.0 4e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MipZ PF09140.6 gi|344209888|ref|YP_004786065.1| - 5.2e-05 22.4 0.1 0.00015 20.9 0.1 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.1 gi|344209888|ref|YP_004786065.1| - 0.0022 17.6 0.0 0.24 11.0 0.1 2.5 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|344209888|ref|YP_004786065.1| - 0.0027 16.8 1.5 0.0053 15.8 0.4 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase Glyco_trans_4_4 PF13579.1 gi|344209888|ref|YP_004786065.1| - 0.013 15.6 0.2 0.013 15.6 0.1 2.3 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain SRP54 PF00448.17 gi|344209888|ref|YP_004786065.1| - 0.015 14.7 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|344209888|ref|YP_004786065.1| - 0.02 14.2 0.7 0.047 13.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|344209888|ref|YP_004786065.1| - 0.065 12.5 0.4 0.17 11.2 0.1 1.6 2 0 0 2 2 2 0 YhjQ protein MobB PF03205.9 gi|344209888|ref|YP_004786065.1| - 0.072 12.7 0.4 0.28 10.8 0.0 2.1 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B MbeB_N PF04837.7 gi|344209888|ref|YP_004786065.1| - 0.12 12.5 0.0 0.36 10.9 0.0 1.8 2 0 0 2 2 2 0 MbeB-like, N-term conserved region HEAT_2 PF13646.1 gi|344209890|ref|YP_004786067.1| - 7e-31 106.3 27.4 1.1e-13 51.2 0.3 3.2 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.17 gi|344209890|ref|YP_004786067.1| - 9.8e-14 50.1 10.3 0.00059 19.7 0.0 5.7 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.1 gi|344209890|ref|YP_004786067.1| - 1.2e-07 31.9 15.1 0.0058 17.0 0.4 4.9 3 2 2 5 5 5 4 HEAT-like repeat DUF4042 PF13251.1 gi|344209890|ref|YP_004786067.1| - 0.041 13.3 0.0 1.7 8.1 0.0 3.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4042) EB_dh PF09459.5 gi|344209891|ref|YP_004786068.1| - 2.4e-27 96.0 11.9 1.2e-26 93.7 8.2 1.9 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Nitrate_red_del PF02613.10 gi|344209892|ref|YP_004786069.1| - 2.8e-17 62.8 0.3 4.3e-17 62.2 0.2 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit DUF442 PF04273.8 gi|344209892|ref|YP_004786069.1| - 0.045 13.5 1.4 0.51 10.2 0.0 2.5 3 0 0 3 3 3 0 Putative phosphatase (DUF442) Fer4_11 PF13247.1 gi|344209893|ref|YP_004786070.1| - 1.4e-32 111.5 5.5 1.4e-32 111.5 3.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|344209893|ref|YP_004786070.1| - 3.4e-12 46.5 10.0 2.2e-07 31.1 4.8 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|344209893|ref|YP_004786070.1| - 1.2e-08 34.5 21.0 1.9e-05 24.3 5.2 3.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|344209893|ref|YP_004786070.1| - 4.2e-08 32.6 20.2 0.0001 21.9 1.4 4.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|344209893|ref|YP_004786070.1| - 2.1e-07 31.0 14.1 0.17 12.1 0.0 3.6 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|344209893|ref|YP_004786070.1| - 3e-06 26.9 13.2 0.0027 17.5 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|344209893|ref|YP_004786070.1| - 3.6e-05 23.4 22.8 0.0092 15.8 1.5 3.7 4 0 0 4 4 3 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|344209893|ref|YP_004786070.1| - 0.0022 18.6 16.1 0.61 10.8 0.7 4.0 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|344209893|ref|YP_004786070.1| - 0.0028 17.9 20.9 0.019 15.3 0.7 3.6 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|344209893|ref|YP_004786070.1| - 0.003 17.1 1.7 0.003 17.1 1.1 4.2 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|344209893|ref|YP_004786070.1| - 0.0047 16.9 16.6 0.26 11.3 6.3 3.0 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|344209893|ref|YP_004786070.1| - 0.0077 16.7 9.8 0.15 12.6 0.0 3.6 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|344209893|ref|YP_004786070.1| - 0.015 15.7 30.0 0.16 12.5 4.2 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|344209893|ref|YP_004786070.1| - 0.019 15.2 26.2 0.36 11.2 1.6 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|344209893|ref|YP_004786070.1| - 0.97 9.8 11.5 0.86 10.0 0.3 3.4 2 1 1 3 3 2 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|344209894|ref|YP_004786071.1| - 3.9e-60 203.8 0.0 7e-60 202.9 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|344209894|ref|YP_004786071.1| - 1.6e-12 47.2 0.5 1.4e-11 44.1 0.0 2.6 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|344209894|ref|YP_004786071.1| - 0.00057 19.6 0.2 0.0021 17.8 0.1 2.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.13 gi|344209894|ref|YP_004786071.1| - 0.019 14.8 0.0 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain TAT_signal PF10518.4 gi|344209894|ref|YP_004786071.1| - 0.023 14.6 1.1 0.056 13.4 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|344209894|ref|YP_004786071.1| - 0.068 12.3 0.7 0.13 11.4 0.5 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Usp PF00582.21 gi|344209895|ref|YP_004786072.1| - 2.5e-08 34.1 0.2 4.1e-08 33.5 0.1 1.3 1 1 0 1 1 1 1 Universal stress protein family Secretin_N PF03958.12 gi|344209895|ref|YP_004786072.1| - 0.022 14.9 0.2 0.039 14.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain FAD_binding_3 PF01494.14 gi|344209896|ref|YP_004786073.1| - 7.6e-12 44.9 6.7 5.8e-09 35.4 4.7 3.0 1 1 0 1 1 1 1 FAD binding domain Tubulin PF00091.20 gi|344209897|ref|YP_004786074.1| - 1.3e-21 77.4 0.0 2.2e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|344209897|ref|YP_004786074.1| - 2.8e-05 23.2 3.0 5.4e-05 22.2 0.0 2.2 1 1 1 2 2 2 1 Tubulin like FmdA_AmdA PF03069.10 gi|344209898|ref|YP_004786075.1| - 1.9e-44 151.9 2.9 2.7e-23 82.2 0.1 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family TRAM PF01938.15 gi|344209898|ref|YP_004786075.1| - 0.1 12.4 1.0 0.36 10.6 0.2 2.2 2 0 0 2 2 2 0 TRAM domain 5_nucleotid_C PF02872.13 gi|344209900|ref|YP_004786077.1| - 1.2e-29 103.2 0.0 2.6e-29 102.2 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos_2 PF12850.2 gi|344209900|ref|YP_004786077.1| - 6.1e-05 22.9 0.3 0.00011 22.0 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|344209900|ref|YP_004786077.1| - 0.0057 16.0 1.1 0.094 12.0 0.8 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Perilipin PF03036.11 gi|344209900|ref|YP_004786077.1| - 0.16 10.7 0.4 0.26 10.0 0.3 1.2 1 0 0 1 1 1 0 Perilipin family ABC_tran PF00005.22 gi|344209902|ref|YP_004786079.1| - 1.9e-57 193.4 0.0 1.6e-28 99.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|344209902|ref|YP_004786079.1| - 3e-20 73.3 5.0 0.00043 20.3 0.0 4.1 2 2 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|344209902|ref|YP_004786079.1| - 3.6e-15 55.8 0.2 9.3e-08 31.5 0.1 3.9 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|344209902|ref|YP_004786079.1| - 2.8e-08 33.1 0.6 0.0042 16.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|344209902|ref|YP_004786079.1| - 5e-07 28.5 0.0 0.13 10.7 0.0 3.1 3 0 0 3 3 3 3 AAA domain AAA_15 PF13175.1 gi|344209902|ref|YP_004786079.1| - 8e-07 28.4 0.0 2.4 7.1 0.0 4.0 4 0 0 4 4 4 2 AAA ATPase domain AAA_23 PF13476.1 gi|344209902|ref|YP_004786079.1| - 1.2e-06 29.0 0.0 0.018 15.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|344209902|ref|YP_004786079.1| - 2.1e-06 27.7 3.7 0.014 15.3 0.2 3.2 2 2 0 2 2 2 2 AAA domain Miro PF08477.8 gi|344209902|ref|YP_004786079.1| - 1.1e-05 25.8 0.1 0.016 15.6 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein PduV-EutP PF10662.4 gi|344209902|ref|YP_004786079.1| - 3.2e-05 23.4 0.1 0.14 11.6 0.0 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|344209902|ref|YP_004786079.1| - 3.6e-05 24.5 4.2 0.03 15.1 0.4 3.4 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|344209902|ref|YP_004786079.1| - 5.7e-05 22.6 2.1 0.36 10.2 0.0 3.6 3 1 0 3 3 3 2 AAA domain MobB PF03205.9 gi|344209902|ref|YP_004786079.1| - 8.2e-05 22.3 0.1 0.12 12.1 0.0 2.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|344209902|ref|YP_004786079.1| - 0.00015 21.0 0.1 0.0094 15.1 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|344209902|ref|YP_004786079.1| - 0.00019 21.4 9.4 0.11 12.5 0.6 3.6 2 2 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.1 gi|344209902|ref|YP_004786079.1| - 0.0002 20.9 0.2 0.47 10.0 0.1 2.6 2 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|344209902|ref|YP_004786079.1| - 0.00021 21.1 0.1 0.58 10.1 0.0 3.1 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|344209902|ref|YP_004786079.1| - 0.00024 20.8 0.5 0.77 9.3 0.0 2.5 2 0 0 2 2 2 2 NACHT domain DUF3584 PF12128.3 gi|344209902|ref|YP_004786079.1| - 0.00037 17.9 0.2 0.095 10.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) AAA_22 PF13401.1 gi|344209902|ref|YP_004786079.1| - 0.0004 20.5 4.6 0.24 11.5 0.4 3.7 2 2 0 2 2 2 2 AAA domain KaiC PF06745.8 gi|344209902|ref|YP_004786079.1| - 0.00041 19.5 0.1 0.29 10.2 0.0 2.4 2 0 0 2 2 2 2 KaiC T2SE PF00437.15 gi|344209902|ref|YP_004786079.1| - 0.00045 19.2 1.5 1.6 7.5 0.1 3.5 3 1 0 4 4 4 2 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|344209902|ref|YP_004786079.1| - 0.00052 20.1 0.0 0.4 10.8 0.0 3.0 3 0 0 3 3 2 1 RNA helicase Mg_chelatase PF01078.16 gi|344209902|ref|YP_004786079.1| - 0.00082 18.5 0.0 0.24 10.5 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|344209902|ref|YP_004786079.1| - 0.0012 18.7 1.5 0.68 9.8 0.3 2.9 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|344209902|ref|YP_004786079.1| - 0.0018 17.8 1.0 0.14 11.6 0.0 3.0 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|344209902|ref|YP_004786079.1| - 0.0021 17.5 0.5 2.2 7.6 0.0 2.9 4 0 0 4 4 3 1 AAA-like domain NB-ARC PF00931.17 gi|344209902|ref|YP_004786079.1| - 0.0023 16.8 0.1 1.4 7.6 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain AAA PF00004.24 gi|344209902|ref|YP_004786079.1| - 0.0025 17.9 0.0 1 9.5 0.0 3.4 4 0 0 4 4 3 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|344209902|ref|YP_004786079.1| - 0.0026 17.4 0.0 0.69 9.5 0.0 2.3 2 0 0 2 2 2 1 Archaeal ATPase NTPase_1 PF03266.10 gi|344209902|ref|YP_004786079.1| - 0.0026 17.4 0.8 0.76 9.4 0.0 3.2 4 0 0 4 4 3 1 NTPase MMR_HSR1 PF01926.18 gi|344209902|ref|YP_004786079.1| - 0.0027 17.6 0.0 0.64 9.9 0.0 3.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|344209902|ref|YP_004786079.1| - 0.0037 17.1 0.0 2.5 8.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|344209902|ref|YP_004786079.1| - 0.0043 17.3 0.0 0.76 10.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|344209902|ref|YP_004786079.1| - 0.0051 16.4 0.2 1.5 8.5 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|344209902|ref|YP_004786079.1| - 0.0063 15.6 0.0 0.17 10.9 0.0 2.5 2 0 0 2 2 2 1 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|344209902|ref|YP_004786079.1| - 0.0073 15.7 0.1 3 7.2 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|344209902|ref|YP_004786079.1| - 0.0082 15.8 1.1 0.88 9.3 0.1 2.9 2 0 0 2 2 2 1 Part of AAA domain AAA_24 PF13479.1 gi|344209902|ref|YP_004786079.1| - 0.026 14.1 0.3 1.1 8.7 0.0 2.6 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.17 gi|344209902|ref|YP_004786079.1| - 0.034 13.5 0.2 8.2 5.8 0.1 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Sigma54_activ_2 PF14532.1 gi|344209902|ref|YP_004786079.1| - 0.055 13.5 0.1 2.8 7.9 0.0 3.0 3 0 0 3 3 3 0 Sigma-54 interaction domain AAA_5 PF07728.9 gi|344209902|ref|YP_004786079.1| - 0.069 12.8 0.1 3.8 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Ras PF00071.17 gi|344209902|ref|YP_004786079.1| - 0.07 12.5 0.4 3.4 7.0 0.0 3.0 3 0 0 3 3 3 0 Ras family cobW PF02492.14 gi|344209902|ref|YP_004786079.1| - 0.074 12.4 1.4 3.6 6.9 0.3 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.20 gi|344209902|ref|YP_004786079.1| - 0.096 12.1 0.0 7.5 5.9 0.0 2.8 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain ABC_ATPase PF09818.4 gi|344209902|ref|YP_004786079.1| - 0.1 11.1 0.2 0.74 8.3 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Pox_A32 PF04665.7 gi|344209902|ref|YP_004786079.1| - 0.12 11.6 0.1 2.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Poxvirus A32 protein G-alpha PF00503.15 gi|344209902|ref|YP_004786079.1| - 0.16 10.6 0.0 6 5.4 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit DAP3 PF10236.4 gi|344209902|ref|YP_004786079.1| - 0.45 9.3 1.4 0.37 9.6 0.0 1.5 2 0 0 2 2 1 0 Mitochondrial ribosomal death-associated protein 3 CbiQ PF02361.11 gi|344209903|ref|YP_004786080.1| - 2.2e-14 53.5 14.4 4.6e-14 52.5 10.0 1.5 1 1 0 1 1 1 1 Cobalt transport protein Tweety PF04906.8 gi|344209903|ref|YP_004786080.1| - 0.93 7.8 0.0 0.93 7.8 0.0 2.0 2 0 0 2 2 2 0 Tweety 2-ph_phosp PF04029.9 gi|344209904|ref|YP_004786081.1| - 9.1e-26 90.2 0.0 1.1e-25 89.9 0.0 1.2 1 0 0 1 1 1 1 2-phosphosulpholactate phosphatase PHP PF02811.14 gi|344209905|ref|YP_004786082.1| - 2.2e-07 30.8 0.1 2.9e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|344209905|ref|YP_004786082.1| - 0.026 14.0 0.0 0.07 12.6 0.0 1.8 1 0 0 1 1 1 0 PHP-associated DUF3592 PF12158.3 gi|344209906|ref|YP_004786083.1| - 4.9e-13 49.1 0.1 6.2e-13 48.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) AAA_16 PF13191.1 gi|344209908|ref|YP_004786085.1| - 0.0015 18.5 10.2 0.2 11.5 1.9 4.8 4 1 0 4 4 4 2 AAA ATPase domain AAA_33 PF13671.1 gi|344209908|ref|YP_004786085.1| - 0.012 15.4 0.0 1.8 8.4 0.0 3.1 2 0 0 2 2 2 0 AAA domain 4HBT PF03061.17 gi|344209909|ref|YP_004786086.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Thioesterase superfamily UPF0261 PF06792.6 gi|344209911|ref|YP_004786088.1| - 2.1e-169 563.3 8.7 2.3e-169 563.1 6.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0261) HycA_repressor PF11046.3 gi|344209911|ref|YP_004786088.1| - 0.15 12.0 0.2 14 5.6 0.0 2.9 2 1 0 3 3 3 0 Transcriptional repressor of hyc and hyp operons Cupin_2 PF07883.6 gi|344209912|ref|YP_004786089.1| - 1.9e-19 68.9 0.8 3.3e-19 68.1 0.6 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|344209912|ref|YP_004786089.1| - 2.6e-08 33.4 0.0 3.2e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|344209912|ref|YP_004786089.1| - 7.3e-07 28.9 0.0 9.3e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|344209912|ref|YP_004786089.1| - 1.6e-06 27.4 0.4 2.5e-06 26.7 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|344209912|ref|YP_004786089.1| - 5.2e-06 26.3 0.0 7.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.13 gi|344209912|ref|YP_004786089.1| - 1.8e-05 24.4 0.0 2.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.2 gi|344209912|ref|YP_004786089.1| - 0.0014 18.4 0.1 0.0023 17.7 0.1 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain CDO_I PF05995.7 gi|344209912|ref|YP_004786089.1| - 0.004 16.3 0.1 0.0098 15.0 0.1 1.6 1 1 0 1 1 1 1 Cysteine dioxygenase type I GPI PF06560.6 gi|344209912|ref|YP_004786089.1| - 0.0068 15.4 0.1 0.0098 14.9 0.0 1.4 1 1 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) ARD PF03079.9 gi|344209912|ref|YP_004786089.1| - 0.029 14.3 0.2 0.042 13.7 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family Cupin_6 PF12852.2 gi|344209912|ref|YP_004786089.1| - 0.031 13.9 0.1 0.059 12.9 0.0 1.4 1 1 0 1 1 1 0 Cupin Pirin_C PF05726.8 gi|344209912|ref|YP_004786089.1| - 0.067 13.2 0.0 0.085 12.9 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain TIM-br_sig_trns PF09370.5 gi|344209913|ref|YP_004786090.1| - 1.5e-130 434.0 0.1 1.7e-130 433.9 0.1 1.0 1 0 0 1 1 1 1 TIM-barrel signal transduction protein NMO PF03060.10 gi|344209913|ref|YP_004786090.1| - 0.00045 19.4 0.3 0.00073 18.7 0.2 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Amidohydro_2 PF04909.9 gi|344209913|ref|YP_004786090.1| - 0.036 13.6 0.1 0.062 12.8 0.0 1.5 1 1 0 1 1 1 0 Amidohydrolase Bac_Ubq_Cox PF01654.12 gi|344209915|ref|YP_004786092.1| - 5e-131 437.1 19.1 6e-131 436.8 13.2 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase DUF3816 PF12822.2 gi|344209915|ref|YP_004786092.1| - 1.6e-07 31.4 4.4 1.6e-07 31.4 3.1 2.7 2 2 1 3 3 3 1 Protein of unknown function (DUF3816) Cyto_ox_2 PF02322.10 gi|344209916|ref|YP_004786093.1| - 7.8e-65 219.1 26.2 1.4e-64 218.3 18.2 1.4 1 1 0 1 1 1 1 Cytochrome oxidase subunit II DUF3188 PF11384.3 gi|344209916|ref|YP_004786093.1| - 6.1 6.4 10.0 5.5 6.6 0.6 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) E1-E2_ATPase PF00122.15 gi|344209917|ref|YP_004786094.1| - 1.1e-39 135.8 0.6 2.6e-39 134.5 0.4 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|344209917|ref|YP_004786094.1| - 9.1e-30 104.6 4.5 1.8e-29 103.6 3.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344209917|ref|YP_004786094.1| - 1.1e-11 45.2 0.0 2.9e-11 43.9 0.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|344209917|ref|YP_004786094.1| - 7.9e-08 32.3 0.1 4e-07 30.0 0.0 2.3 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|344209917|ref|YP_004786094.1| - 3.9e-05 23.3 0.1 5.9e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|344209917|ref|YP_004786094.1| - 0.00075 19.9 1.5 0.0015 19.0 0.3 1.9 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase DsbD_2 PF13386.1 gi|344209918|ref|YP_004786095.1| - 2.4e-30 105.7 18.0 3.1e-30 105.4 12.5 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region EBV-NA1 PF02905.9 gi|344209918|ref|YP_004786095.1| - 0.099 12.1 0.0 0.17 11.3 0.0 1.5 1 0 0 1 1 1 0 Epstein Barr virus nuclear antigen-1, DNA-binding domain Chlorosome_CsmC PF11098.3 gi|344209918|ref|YP_004786095.1| - 0.4 10.3 5.1 6.3 6.5 0.1 2.2 1 1 1 2 2 2 0 Chlorosome envelope protein C Y1_Tnp PF01797.11 gi|344209919|ref|YP_004786096.1| - 0.022 14.6 0.0 0.025 14.4 0.0 1.1 1 0 0 1 1 1 0 Transposase IS200 like DDE_Tnp_IS240 PF13610.1 gi|344209920|ref|YP_004786097.1| - 2.4e-17 63.1 0.1 3.4e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.1 gi|344209920|ref|YP_004786097.1| - 4.7e-07 29.2 2.5 8.2e-07 28.4 1.7 1.4 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.5 gi|344209920|ref|YP_004786097.1| - 0.0013 18.5 0.7 0.08 12.8 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF2384) rve PF00665.21 gi|344209920|ref|YP_004786097.1| - 0.0069 16.4 0.1 0.013 15.5 0.0 1.6 1 1 0 1 1 1 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|344209920|ref|YP_004786097.1| - 0.034 13.3 0.2 0.08 12.1 0.2 1.8 1 1 0 1 1 1 0 Transposase IS66 family FYVE PF01363.16 gi|344209921|ref|YP_004786098.1| - 0.0094 15.8 2.7 2.3 8.1 0.1 2.3 1 1 1 2 2 2 2 FYVE zinc finger Lar_restr_allev PF14354.1 gi|344209921|ref|YP_004786098.1| - 0.12 12.6 7.4 0.37 11.1 0.6 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.2 gi|344209921|ref|YP_004786098.1| - 1.1 9.1 5.6 20 5.1 3.9 2.4 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|344209921|ref|YP_004786098.1| - 3.7 7.3 6.8 9.3 6.0 0.8 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.1 gi|344209921|ref|YP_004786098.1| - 7.1 6.3 6.8 33 4.2 0.0 2.7 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|344209921|ref|YP_004786098.1| - 7.6 5.8 8.3 1.7 7.9 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Methyltransf_13 PF08421.6 gi|344209921|ref|YP_004786098.1| - 8.3 5.9 6.6 20 4.7 0.0 3.1 3 0 0 3 3 3 0 Putative zinc binding domain E1-E2_ATPase PF00122.15 gi|344209922|ref|YP_004786099.1| - 7.3e-69 231.3 0.8 7.3e-69 231.3 0.6 2.1 2 1 0 2 2 2 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|344209922|ref|YP_004786099.1| - 3.1e-38 131.1 3.7 3.1e-38 131.1 2.6 1.7 2 0 0 2 2 2 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|344209922|ref|YP_004786099.1| - 1.9e-32 113.4 0.0 6.2e-32 111.7 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|344209922|ref|YP_004786099.1| - 1.1e-21 76.0 0.1 5.7e-21 73.7 0.0 2.4 3 0 0 3 3 3 1 Cation transporter/ATPase, N-terminus Hydrolase_like2 PF13246.1 gi|344209922|ref|YP_004786099.1| - 4.4e-17 61.8 0.0 2.3e-16 59.5 0.0 2.1 2 0 0 2 2 2 1 Putative hydrolase of sodium-potassium ATPase alpha subunit HAD PF12710.2 gi|344209922|ref|YP_004786099.1| - 2.7e-16 60.2 0.0 5.7e-16 59.2 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344209922|ref|YP_004786099.1| - 0.00027 20.6 2.6 0.018 14.6 0.6 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF3366 PF11846.3 gi|344209922|ref|YP_004786099.1| - 0.47 10.2 2.5 23 4.7 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3366) Pyridox_ox_2 PF12900.2 gi|344209923|ref|YP_004786100.1| - 1.8e-17 63.4 0.0 2.1e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|344209923|ref|YP_004786100.1| - 8.2e-07 28.9 0.0 1.1e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase CBS PF00571.23 gi|344209924|ref|YP_004786101.1| - 1.8e-25 88.4 1.5 5.6e-13 48.4 0.2 2.4 2 0 0 2 2 2 2 CBS domain MaoC_dehydratas PF01575.14 gi|344209924|ref|YP_004786101.1| - 1.3e-18 66.5 0.0 3.1e-18 65.3 0.0 1.6 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|344209924|ref|YP_004786101.1| - 1e-05 25.3 0.0 3.5e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase AstE_AspA PF04952.9 gi|344209924|ref|YP_004786101.1| - 0.031 13.1 0.1 0.049 12.4 0.0 1.3 1 0 0 1 1 1 0 Succinylglutamate desuccinylase / Aspartoacylase family 4HBT PF03061.17 gi|344209924|ref|YP_004786101.1| - 0.075 13.1 0.1 0.34 11.0 0.0 2.2 2 0 0 2 2 2 0 Thioesterase superfamily TruB_C PF09142.6 gi|344209924|ref|YP_004786101.1| - 0.1 12.2 0.2 0.76 9.4 0.0 2.3 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal HEAT_2 PF13646.1 gi|344209925|ref|YP_004786102.1| - 1.9e-20 72.9 24.7 5.6e-07 29.7 0.3 5.4 2 2 4 6 6 6 6 HEAT repeats HEAT PF02985.17 gi|344209925|ref|YP_004786102.1| - 3e-18 64.2 15.9 0.00042 20.1 0.1 7.2 7 0 0 7 7 7 5 HEAT repeat Adaptin_N PF01602.15 gi|344209925|ref|YP_004786102.1| - 4.4e-14 51.7 0.1 0.00047 18.6 0.0 3.3 2 1 1 3 3 3 3 Adaptin N terminal region HEAT_EZ PF13513.1 gi|344209925|ref|YP_004786102.1| - 1.2e-13 51.0 24.5 0.0012 19.2 0.1 7.1 4 3 3 7 7 7 6 HEAT-like repeat Cnd1 PF12717.2 gi|344209925|ref|YP_004786102.1| - 3e-10 40.2 0.0 5.4e-05 23.1 0.0 3.9 2 2 2 4 4 4 2 non-SMC mitotic condensation complex subunit 1 HEAT_PBS PF03130.11 gi|344209925|ref|YP_004786102.1| - 0.0017 18.6 15.9 8.3 7.2 0.2 8.8 10 1 0 10 10 9 1 PBS lyase HEAT-like repeat Arm PF00514.18 gi|344209925|ref|YP_004786102.1| - 0.013 15.3 1.1 0.18 11.6 0.0 3.4 4 0 0 4 4 4 0 Armadillo/beta-catenin-like repeat DUF1546 PF07571.8 gi|344209925|ref|YP_004786102.1| - 0.021 14.9 0.1 17 5.5 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF1546) API5 PF05918.6 gi|344209925|ref|YP_004786102.1| - 0.059 11.8 2.0 13 4.1 0.1 3.1 2 1 0 3 3 3 0 Apoptosis inhibitory protein 5 (API5) Vac14_Fab1_bd PF12755.2 gi|344209925|ref|YP_004786102.1| - 0.069 13.5 0.0 13 6.2 0.0 3.3 3 1 1 4 4 4 0 Vacuolar 14 Fab1-binding region UPF0147 PF03685.8 gi|344209925|ref|YP_004786102.1| - 0.33 10.8 3.6 3.8 7.4 0.1 3.7 4 1 1 5 5 5 0 Uncharacterised protein family (UPF0147) HTH_AsnC-type PF13404.1 gi|344209926|ref|YP_004786103.1| - 1.3e-13 50.1 1.4 2.3e-13 49.4 1.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|344209926|ref|YP_004786103.1| - 9.4e-12 44.1 0.2 1.6e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|344209926|ref|YP_004786103.1| - 0.00015 21.3 0.1 0.00044 19.8 0.1 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|344209926|ref|YP_004786103.1| - 0.00029 20.4 0.0 0.00065 19.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|344209926|ref|YP_004786103.1| - 0.00032 20.4 0.0 0.00064 19.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|344209926|ref|YP_004786103.1| - 0.0023 17.4 0.2 0.0054 16.2 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|344209926|ref|YP_004786103.1| - 0.0024 18.1 0.1 0.0054 17.0 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|344209926|ref|YP_004786103.1| - 0.0044 16.6 0.0 0.011 15.4 0.0 1.6 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|344209926|ref|YP_004786103.1| - 0.0065 16.0 0.0 0.025 14.1 0.0 1.9 2 0 0 2 2 2 1 LexA DNA binding domain TrmB PF01978.14 gi|344209926|ref|YP_004786103.1| - 0.021 14.5 0.0 0.044 13.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TOBE_2 PF08402.5 gi|344209926|ref|YP_004786103.1| - 0.057 13.4 0.8 0.24 11.4 0.1 2.0 2 0 0 2 2 2 0 TOBE domain P2 PF07194.6 gi|344209926|ref|YP_004786103.1| - 0.085 12.7 0.1 2.8 7.8 0.0 2.5 2 1 1 3 3 3 0 P2 response regulator binding domain HTH_CodY PF08222.6 gi|344209926|ref|YP_004786103.1| - 0.091 12.1 0.0 0.23 10.8 0.0 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_23 PF13384.1 gi|344209926|ref|YP_004786103.1| - 0.11 12.2 0.1 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Hydrolase PF00702.21 gi|344209927|ref|YP_004786104.1| - 5e-26 92.4 2.5 7.9e-26 91.8 1.8 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|344209927|ref|YP_004786104.1| - 1.9e-11 44.4 0.1 3.1e-11 43.7 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|344209927|ref|YP_004786104.1| - 0.00031 20.3 0.1 0.018 14.6 0.2 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.13 gi|344209927|ref|YP_004786104.1| - 0.045 13.5 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 DNA photolyase UPF0175 PF03683.8 gi|344209931|ref|YP_004786108.1| - 8.8e-27 92.3 0.8 9.6e-27 92.2 0.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DUF3368 PF11848.3 gi|344209932|ref|YP_004786109.1| - 2.2e-12 46.3 0.0 4e-12 45.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) zf-ribbon_3 PF13248.1 gi|344209933|ref|YP_004786110.1| - 4.8e-05 22.4 7.1 0.0081 15.3 0.7 3.4 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|344209933|ref|YP_004786110.1| - 0.00049 19.8 11.8 0.0016 18.2 1.1 2.8 2 1 0 2 2 2 2 Double zinc ribbon HypA PF01155.14 gi|344209933|ref|YP_004786110.1| - 0.0073 15.9 4.4 0.27 10.9 0.1 2.3 2 0 0 2 2 2 2 Hydrogenase expression/synthesis hypA family DUF4596 PF15363.1 gi|344209933|ref|YP_004786110.1| - 0.014 15.2 0.2 0.047 13.6 0.2 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) Baculo_LEF5_C PF11792.3 gi|344209933|ref|YP_004786110.1| - 0.067 12.5 0.1 0.067 12.5 0.0 2.9 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain DUF2116 PF09889.4 gi|344209933|ref|YP_004786110.1| - 0.096 12.4 0.6 0.21 11.4 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zinc_ribbon_2 PF13240.1 gi|344209933|ref|YP_004786110.1| - 0.35 10.4 14.0 0.26 10.8 1.3 3.5 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|344209933|ref|YP_004786110.1| - 0.48 10.1 4.5 38 4.0 0.2 3.5 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|344209933|ref|YP_004786110.1| - 2 8.3 13.6 0.11 12.2 1.7 3.1 2 1 1 3 3 3 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|344209933|ref|YP_004786110.1| - 3.9 7.0 8.3 27 4.3 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain ABC_tran PF00005.22 gi|344209934|ref|YP_004786111.1| - 2.4e-31 108.8 0.0 3.5e-31 108.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|344209934|ref|YP_004786111.1| - 6.1e-20 71.3 1.1 1.4e-19 70.2 0.8 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|344209934|ref|YP_004786111.1| - 2.6e-08 34.1 0.0 2.6e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|344209934|ref|YP_004786111.1| - 1.8e-05 24.8 0.3 3.4e-05 23.9 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|344209934|ref|YP_004786111.1| - 0.00012 22.2 0.4 0.0021 18.1 0.3 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|344209934|ref|YP_004786111.1| - 0.00013 21.2 0.0 0.0002 20.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.16 gi|344209934|ref|YP_004786111.1| - 0.00095 18.3 0.0 0.013 14.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|344209934|ref|YP_004786111.1| - 0.0018 17.4 0.1 0.0029 16.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|344209934|ref|YP_004786111.1| - 0.0047 16.3 0.6 0.016 14.5 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|344209934|ref|YP_004786111.1| - 0.0076 16.4 0.0 0.051 13.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|344209934|ref|YP_004786111.1| - 0.0084 15.8 0.2 0.23 11.1 0.1 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|344209934|ref|YP_004786111.1| - 0.013 15.4 0.1 0.031 14.1 0.1 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.7 gi|344209934|ref|YP_004786111.1| - 0.015 14.3 0.2 0.04 13.0 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.1 gi|344209934|ref|YP_004786111.1| - 0.018 15.1 0.0 0.049 13.6 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP-synt_ab PF00006.20 gi|344209934|ref|YP_004786111.1| - 0.021 14.3 0.1 0.021 14.3 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|344209934|ref|YP_004786111.1| - 0.023 14.1 0.1 0.042 13.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|344209934|ref|YP_004786111.1| - 0.033 13.6 0.1 0.095 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Sigma54_activat PF00158.21 gi|344209934|ref|YP_004786111.1| - 0.036 13.5 0.0 0.4 10.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_13 PF13166.1 gi|344209934|ref|YP_004786111.1| - 0.047 12.1 0.3 0.95 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|344209934|ref|YP_004786111.1| - 0.091 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|344209934|ref|YP_004786111.1| - 0.1 12.2 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|344209934|ref|YP_004786111.1| - 0.14 11.8 0.3 0.84 9.3 0.1 2.1 2 0 0 2 2 2 0 NTPase AAA_18 PF13238.1 gi|344209934|ref|YP_004786111.1| - 0.15 12.3 0.1 0.45 10.8 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|344209934|ref|YP_004786111.1| - 0.15 12.8 0.1 0.31 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|344209934|ref|YP_004786111.1| - 0.16 10.8 0.2 0.26 10.1 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|344209935|ref|YP_004786112.1| - 5.9e-27 94.6 0.0 9.8e-27 93.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|344209935|ref|YP_004786112.1| - 5.4e-16 58.7 0.4 9.7e-16 57.8 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|344209935|ref|YP_004786112.1| - 2.2e-06 27.8 0.2 0.088 12.9 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_21 PF13304.1 gi|344209935|ref|YP_004786112.1| - 2.6e-06 27.6 1.6 0.0005 20.1 0.0 3.0 2 1 0 3 3 3 1 AAA domain SMC_N PF02463.14 gi|344209935|ref|YP_004786112.1| - 0.0061 15.8 0.1 0.21 10.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|344209935|ref|YP_004786112.1| - 0.0067 16.4 1.5 0.015 15.2 1.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.12 gi|344209935|ref|YP_004786112.1| - 0.0083 15.9 0.2 0.019 14.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|344209935|ref|YP_004786112.1| - 0.0084 15.5 0.1 0.023 14.1 0.1 1.8 1 1 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|344209935|ref|YP_004786112.1| - 0.063 12.6 0.1 2.3 7.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|344209935|ref|YP_004786112.1| - 0.064 12.8 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.17 gi|344209936|ref|YP_004786113.1| - 2.4e-31 108.6 9.6 2.4e-31 108.6 6.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|344209936|ref|YP_004786113.1| - 2.1e-06 26.9 0.0 2.1e-06 26.9 0.0 3.1 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|344209937|ref|YP_004786114.1| - 1.6e-40 138.6 7.7 1.6e-40 138.6 5.3 1.8 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3561 PF12084.3 gi|344209937|ref|YP_004786114.1| - 3.1 7.6 6.6 0.29 10.9 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3561) SBP_bac_5 PF00496.17 gi|344209938|ref|YP_004786115.1| - 3.3e-81 273.0 0.1 4.4e-81 272.5 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SBP_bac_5 PF00496.17 gi|344209939|ref|YP_004786116.1| - 3.1e-67 227.0 1.4 3.8e-67 226.7 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle GSIII_N PF12437.3 gi|344209939|ref|YP_004786116.1| - 0.0062 15.9 0.1 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase type III N terminal TAT_signal PF10518.4 gi|344209939|ref|YP_004786116.1| - 0.079 13.0 0.6 0.19 11.8 0.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence