# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- TaqI_C PF12950.7 gi|299883433|ref|YP_003738985.1| - 5.2e-15 55.6 0.0 1.4e-14 54.2 0.0 1.8 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Eco57I PF07669.11 gi|299883433|ref|YP_003738985.1| - 7e-09 36.1 0.0 2.6e-08 34.3 0.0 2.0 1 0 0 1 1 1 1 Eco57I restriction-modification methylase N6_Mtase PF02384.16 gi|299883433|ref|YP_003738985.1| - 4.1e-08 32.9 0.0 1.6e-05 24.3 0.1 3.4 2 1 0 2 2 2 1 N-6 DNA Methylase UPF0020 PF01170.18 gi|299883433|ref|YP_003738985.1| - 0.0016 18.1 0.0 0.16 11.6 0.0 2.5 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 HSDR_N PF04313.14 gi|299883433|ref|YP_003738985.1| - 0.0047 16.9 0.0 0.17 11.8 0.0 2.8 1 1 1 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.6 gi|299883433|ref|YP_003738985.1| - 0.021 14.8 0.0 0.18 11.8 0.0 2.4 1 1 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Helicase_C PF00271.31 gi|299883434|ref|YP_003738986.1| - 1.4e-22 80.1 0.0 9.4e-22 77.5 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|299883434|ref|YP_003738986.1| - 7.3e-19 67.7 0.0 5.1e-17 61.6 0.0 2.2 1 1 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|299883434|ref|YP_003738986.1| - 3.1e-12 46.8 0.6 6.3e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit RapA_C PF12137.8 gi|299883434|ref|YP_003738986.1| - 1.2e-06 27.8 0.0 1.2e-06 27.8 0.0 3.0 3 0 0 3 3 3 1 RNA polymerase recycling family C-terminal DEAD PF00270.29 gi|299883434|ref|YP_003738986.1| - 8.1e-06 25.7 0.0 2.1e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_34 PF13872.6 gi|299883434|ref|YP_003738986.1| - 0.00081 18.4 0.1 0.0022 16.9 0.1 1.7 1 1 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 VAPB_antitox PF02697.14 gi|299883437|ref|YP_003738989.1| - 1.2e-05 26.0 2.1 1.3e-05 25.9 2.1 1.0 1 0 0 1 1 1 1 Putative antitoxin DUF3862 PF12978.7 gi|299883437|ref|YP_003738989.1| - 0.11 12.3 0.0 0.11 12.3 0.0 1.0 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3862) DUF910 PF06014.11 gi|299883438|ref|YP_003738990.1| - 0.023 14.7 0.7 0.043 13.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF910) SHOCT PF09851.9 gi|299883438|ref|YP_003738990.1| - 0.031 14.0 0.6 0.031 14.0 0.6 3.9 5 0 0 5 5 5 0 Short C-terminal domain Vps5 PF09325.10 gi|299883442|ref|YP_003738994.1| - 0.00019 21.1 2.4 0.37 10.3 3.9 2.1 1 1 1 2 2 2 2 Vps5 C terminal like Tektin PF03148.14 gi|299883442|ref|YP_003738994.1| - 0.00031 19.6 4.0 0.00046 19.1 4.0 1.2 1 0 0 1 1 1 1 Tektin family APG6_N PF17675.1 gi|299883442|ref|YP_003738994.1| - 0.00039 20.9 8.5 0.0007 20.1 8.5 1.4 1 0 0 1 1 1 1 Apg6 coiled-coil region Phage_GP20 PF06810.11 gi|299883442|ref|YP_003738994.1| - 0.00064 19.5 2.7 0.0015 18.4 2.8 1.5 2 0 0 2 2 1 1 Phage minor structural protein GP20 Laminin_II PF06009.12 gi|299883442|ref|YP_003738994.1| - 0.0014 18.7 1.5 0.0027 17.8 1.5 1.4 1 0 0 1 1 1 1 Laminin Domain II DUF3450 PF11932.8 gi|299883442|ref|YP_003738994.1| - 0.0017 17.7 3.8 0.0026 17.1 3.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) FmiP_Thoc5 PF09766.9 gi|299883442|ref|YP_003738994.1| - 0.0036 16.6 2.4 0.0043 16.4 2.4 1.2 1 0 0 1 1 1 1 Fms-interacting protein/Thoc5 Spc7 PF08317.11 gi|299883442|ref|YP_003738994.1| - 0.0037 16.2 3.5 0.0045 15.9 3.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Rab5-bind PF09311.11 gi|299883442|ref|YP_003738994.1| - 0.0063 15.9 3.7 0.0063 15.9 3.7 1.4 2 0 0 2 2 1 1 Rabaptin-like protein Jnk-SapK_ap_N PF09744.9 gi|299883442|ref|YP_003738994.1| - 0.0074 16.5 5.2 0.014 15.6 5.2 1.6 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 ADIP PF11559.8 gi|299883442|ref|YP_003738994.1| - 0.0075 16.4 5.9 0.012 15.7 5.9 1.3 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Syntaxin-6_N PF09177.11 gi|299883442|ref|YP_003738994.1| - 0.0088 16.6 1.0 0.015 15.8 1.0 1.5 1 0 0 1 1 1 1 Syntaxin 6, N-terminal Tropomyosin_1 PF12718.7 gi|299883442|ref|YP_003738994.1| - 0.0092 16.1 12.0 0.031 14.4 12.2 1.8 2 0 0 2 2 1 1 Tropomyosin like Lectin_N PF03954.14 gi|299883442|ref|YP_003738994.1| - 0.0096 15.7 0.5 0.016 15.0 0.5 1.3 1 0 0 1 1 1 1 Hepatic lectin, N-terminal domain FapA PF03961.13 gi|299883442|ref|YP_003738994.1| - 0.014 14.0 0.9 0.018 13.7 0.9 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A DHR10 PF18595.1 gi|299883442|ref|YP_003738994.1| - 0.014 15.4 11.5 0.027 14.5 11.5 1.4 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF737 PF05300.11 gi|299883442|ref|YP_003738994.1| - 0.016 15.6 8.8 0.026 14.9 8.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF737) HAUS-augmin3 PF14932.6 gi|299883442|ref|YP_003738994.1| - 0.019 14.5 4.0 0.025 14.2 4.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Mce4_CUP1 PF11887.8 gi|299883442|ref|YP_003738994.1| - 0.022 14.2 0.1 0.034 13.6 0.1 1.2 1 0 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative Fmp27_WPPW PF10359.9 gi|299883442|ref|YP_003738994.1| - 0.023 13.6 1.2 0.028 13.3 1.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1664 PF07889.12 gi|299883442|ref|YP_003738994.1| - 0.024 14.7 2.4 0.035 14.1 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) GAS PF13851.6 gi|299883442|ref|YP_003738994.1| - 0.025 13.9 6.1 0.034 13.5 6.1 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Prefoldin_2 PF01920.20 gi|299883442|ref|YP_003738994.1| - 0.04 13.9 9.5 0.28 11.1 3.0 2.3 1 1 1 2 2 2 0 Prefoldin subunit ZapB PF06005.12 gi|299883442|ref|YP_003738994.1| - 0.045 14.2 10.5 0.09 13.2 10.5 1.4 1 0 0 1 1 1 0 Cell division protein ZapB UPF0242 PF06785.11 gi|299883442|ref|YP_003738994.1| - 0.07 13.2 3.8 0.098 12.8 3.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus AAA_13 PF13166.6 gi|299883442|ref|YP_003738994.1| - 0.07 11.8 1.7 0.087 11.5 1.7 1.1 1 0 0 1 1 1 0 AAA domain TMPIT PF07851.13 gi|299883442|ref|YP_003738994.1| - 0.083 12.1 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein CENP-F_leu_zip PF10473.9 gi|299883442|ref|YP_003738994.1| - 0.099 12.7 11.4 0.19 11.7 11.3 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_23 PF13476.6 gi|299883442|ref|YP_003738994.1| - 0.11 13.0 3.8 0.16 12.5 3.8 1.4 1 0 0 1 1 1 0 AAA domain Macoilin PF09726.9 gi|299883442|ref|YP_003738994.1| - 0.13 10.8 2.0 0.15 10.5 2.0 1.1 1 0 0 1 1 1 0 Macoilin family CENP-H PF05837.12 gi|299883442|ref|YP_003738994.1| - 0.14 12.6 5.1 0.23 11.9 5.1 1.3 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Lipoprotein_20 PF13942.6 gi|299883442|ref|YP_003738994.1| - 0.14 12.1 4.7 0.24 11.3 4.7 1.4 1 0 0 1 1 1 0 YfhG lipoprotein DUF916 PF06030.12 gi|299883442|ref|YP_003738994.1| - 0.14 12.2 0.3 9.8 6.3 0.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF916) FemAB PF02388.16 gi|299883442|ref|YP_003738994.1| - 0.14 11.0 3.0 0.19 10.5 3.0 1.1 1 0 0 1 1 1 0 FemAB family TraF_2 PF13729.6 gi|299883442|ref|YP_003738994.1| - 0.16 11.3 0.1 0.18 11.1 0.1 1.1 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein Seryl_tRNA_N PF02403.22 gi|299883442|ref|YP_003738994.1| - 0.17 12.2 6.9 0.43 10.8 6.9 1.7 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF3552 PF12072.8 gi|299883442|ref|YP_003738994.1| - 0.17 11.3 9.5 0.25 10.7 9.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) NPV_P10 PF05531.12 gi|299883442|ref|YP_003738994.1| - 0.19 12.2 1.4 0.54 10.8 1.4 1.9 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CENP-Q PF13094.6 gi|299883442|ref|YP_003738994.1| - 0.21 11.8 8.9 0.23 11.6 8.0 1.5 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF724 PF05266.14 gi|299883442|ref|YP_003738994.1| - 0.23 11.2 3.4 0.36 10.6 3.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF2968 PF11180.8 gi|299883442|ref|YP_003738994.1| - 0.25 11.0 5.8 0.27 10.8 4.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) DUF4407 PF14362.6 gi|299883442|ref|YP_003738994.1| - 0.25 10.7 1.7 0.3 10.4 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4337 PF14235.6 gi|299883442|ref|YP_003738994.1| - 0.27 11.3 3.0 0.4 10.8 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) XhlA PF10779.9 gi|299883442|ref|YP_003738994.1| - 0.28 11.4 9.8 0.33 11.2 3.3 2.4 1 1 1 2 2 2 0 Haemolysin XhlA KfrA_N PF11740.8 gi|299883442|ref|YP_003738994.1| - 0.29 11.8 7.6 1.1 9.9 7.6 2.0 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term ATG16 PF08614.11 gi|299883442|ref|YP_003738994.1| - 0.3 11.3 11.8 0.45 10.7 11.5 1.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) PHTB1_C PF14728.6 gi|299883442|ref|YP_003738994.1| - 0.31 10.1 1.1 0.41 9.7 1.1 1.1 1 0 0 1 1 1 0 PTHB1 C-terminus TPR_MLP1_2 PF07926.12 gi|299883442|ref|YP_003738994.1| - 0.32 11.1 9.9 0.87 9.7 9.9 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.8 gi|299883442|ref|YP_003738994.1| - 0.42 10.6 9.9 0.84 9.7 9.9 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF773 PF05600.12 gi|299883442|ref|YP_003738994.1| - 0.59 8.8 5.9 1.4 7.6 5.9 1.5 1 1 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 Atg14 PF10186.9 gi|299883442|ref|YP_003738994.1| - 1.2 8.2 3.8 1.5 7.8 3.8 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 EMP24_GP25L PF01105.24 gi|299883442|ref|YP_003738994.1| - 1.4 8.8 6.1 2.2 8.2 6.1 1.4 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Spc24 PF08286.11 gi|299883442|ref|YP_003738994.1| - 1.5 9.1 8.6 18 5.6 8.6 2.2 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 FlaC_arch PF05377.11 gi|299883442|ref|YP_003738994.1| - 1.9 9.0 4.9 3.9 8.0 1.8 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|299883442|ref|YP_003738994.1| - 2.7 8.5 10.9 7.9 7.0 5.1 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DivIC PF04977.15 gi|299883442|ref|YP_003738994.1| - 4.4 7.1 12.3 3.8 7.3 6.0 2.4 1 1 1 2 2 2 0 Septum formation initiator TAT_signal PF10518.9 gi|299883444|ref|YP_003738996.1| - 9.3e-05 22.1 3.4 0.0002 21.0 3.4 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|299883444|ref|YP_003738996.1| - 0.0091 15.9 2.0 0.0091 15.9 2.0 2.4 2 1 0 2 2 2 1 Right handed beta helix region DUF2530 PF10745.9 gi|299883445|ref|YP_003738997.1| - 0.092 13.0 3.1 0.22 11.8 3.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) ATPase_2 PF01637.18 gi|299883448|ref|YP_003739000.1| - 0.069 13.1 0.2 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Endonuc-BglII PF09195.11 gi|299883449|ref|YP_003739001.1| - 0.033 14.0 0.0 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease BglII RHH_5 PF07878.11 gi|299883450|ref|YP_003739002.1| - 0.0044 16.9 0.1 0.0089 15.9 0.1 1.5 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_7 PF16777.5 gi|299883450|ref|YP_003739002.1| - 0.019 15.3 0.0 0.036 14.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, RHH-like, CopG DUF489 PF04356.12 gi|299883450|ref|YP_003739002.1| - 0.066 13.2 1.0 0.086 12.8 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF489) Vpu PF00558.19 gi|299883450|ref|YP_003739002.1| - 2.7 7.8 6.9 1.4 8.8 0.5 2.4 2 0 0 2 2 2 0 Vpu protein Glycos_trans_3N PF02885.17 gi|299883451|ref|YP_003739003.1| - 0.083 12.7 0.1 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain TrwB_AAD_bind PF10412.9 gi|299883452|ref|YP_003739004.1| - 1e-39 136.6 0.0 1.6e-39 135.9 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|299883452|ref|YP_003739004.1| - 1.2e-13 51.1 0.0 2.2e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG T4SS-DNA_transf PF02534.14 gi|299883452|ref|YP_003739004.1| - 7e-13 48.2 0.0 1.1e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.6 gi|299883452|ref|YP_003739004.1| - 1.4e-06 28.7 0.0 0.00041 20.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|299883452|ref|YP_003739004.1| - 1.2e-05 25.5 0.0 2.4e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 gi|299883452|ref|YP_003739004.1| - 0.036 14.4 0.1 0.16 12.3 0.1 2.3 1 1 0 1 1 1 0 AAA ATPase domain DUF2026 PF09641.10 gi|299883452|ref|YP_003739004.1| - 0.059 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) Zeta_toxin PF06414.12 gi|299883452|ref|YP_003739004.1| - 0.079 12.2 0.0 0.23 10.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|299883452|ref|YP_003739004.1| - 0.097 12.7 0.0 4 7.4 0.0 2.5 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|299883452|ref|YP_003739004.1| - 0.11 13.0 0.0 0.95 10.0 0.0 2.2 2 0 0 2 2 2 0 ABC transporter Roc PF08477.13 gi|299883452|ref|YP_003739004.1| - 0.16 12.2 0.0 1.3 9.2 0.0 2.5 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|299883452|ref|YP_003739004.1| - 0.18 11.3 0.0 0.43 10.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region RHH_1 PF01402.21 gi|299883454|ref|YP_003739006.1| - 1.1e-07 31.6 1.4 3.2e-07 30.0 1.4 1.9 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|299883454|ref|YP_003739006.1| - 0.013 16.0 0.1 0.039 14.5 0.0 1.8 2 0 0 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system RHH_4 PF13467.6 gi|299883454|ref|YP_003739006.1| - 0.014 15.3 0.3 0.027 14.3 0.3 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix domain CALCOCO1 PF07888.11 gi|299883454|ref|YP_003739006.1| - 0.027 13.3 15.8 0.031 13.1 15.8 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like V_ATPase_I PF01496.19 gi|299883454|ref|YP_003739006.1| - 0.048 11.6 5.7 0.051 11.5 5.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family CSN5_C PF18323.1 gi|299883454|ref|YP_003739006.1| - 0.049 14.5 0.5 0.085 13.8 0.5 1.4 1 0 0 1 1 1 0 Cop9 signalosome subunit 5 C-terminal domain Bul1_C PF04426.12 gi|299883454|ref|YP_003739006.1| - 0.057 12.8 2.9 0.057 12.8 2.0 1.4 1 1 0 1 1 1 0 Bul1 C terminus DUF4407 PF14362.6 gi|299883454|ref|YP_003739006.1| - 0.061 12.7 5.5 0.08 12.3 5.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 gi|299883454|ref|YP_003739006.1| - 0.064 13.3 1.4 0.078 13.0 1.4 1.3 1 0 0 1 1 1 0 Laminin Domain II DUF1796 PF08795.10 gi|299883454|ref|YP_003739006.1| - 0.088 12.8 2.6 0.11 12.5 2.6 1.2 1 0 0 1 1 1 0 Putative papain-like cysteine peptidase (DUF1796) HAUS6_N PF14661.6 gi|299883454|ref|YP_003739006.1| - 0.12 11.9 6.7 0.16 11.5 6.7 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Exonuc_VII_L PF02601.15 gi|299883454|ref|YP_003739006.1| - 0.18 11.3 7.8 0.22 11.1 7.8 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit Paralemmin PF03285.15 gi|299883454|ref|YP_003739006.1| - 0.18 11.3 11.8 0.078 12.5 9.6 1.5 2 0 0 2 2 2 0 Paralemmin DUF3987 PF13148.6 gi|299883454|ref|YP_003739006.1| - 0.41 9.6 7.3 0.3 10.0 5.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3987) DUF724 PF05266.14 gi|299883454|ref|YP_003739006.1| - 0.53 10.1 7.3 0.7 9.7 7.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Fungal_trans_2 PF11951.8 gi|299883454|ref|YP_003739006.1| - 0.81 8.4 3.4 0.89 8.3 3.4 1.2 1 0 0 1 1 1 0 Fungal specific transcription factor domain FapA PF03961.13 gi|299883454|ref|YP_003739006.1| - 1.9 7.0 6.3 2.3 6.7 6.3 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A LUC7 PF03194.15 gi|299883454|ref|YP_003739006.1| - 3.4 7.3 12.3 4.5 6.9 12.3 1.1 1 0 0 1 1 1 0 LUC7 N_terminus HMMR_N PF15905.5 gi|299883454|ref|YP_003739006.1| - 3.5 7.0 18.7 5.9 6.3 18.1 1.5 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal YabA PF06156.13 gi|299883454|ref|YP_003739006.1| - 4.3 8.0 9.5 7.5 7.3 9.1 1.7 1 1 0 1 1 1 0 Initiation control protein YabA UPF0242 PF06785.11 gi|299883454|ref|YP_003739006.1| - 5.4 7.1 19.6 0.42 10.7 7.3 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus AAA_11 PF13086.6 gi|299883454|ref|YP_003739006.1| - 6.2 6.5 7.1 7 6.4 7.1 1.1 1 0 0 1 1 1 0 AAA domain DDE_Tnp_1 PF01609.21 gi|299883455|ref|YP_003739007.1| - 1.1e-09 38.3 0.0 3.5e-09 36.6 0.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|299883455|ref|YP_003739007.1| - 0.00099 19.1 0.2 0.046 13.7 0.0 2.5 2 0 0 2 2 2 1 Transposase domain (DUF772) GATase_2 PF00310.21 gi|299883455|ref|YP_003739007.1| - 0.052 12.3 0.3 0.08 11.6 0.3 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II TrkH PF02386.16 gi|299883457|ref|YP_003739009.1| - 4e-66 223.5 14.2 1.6e-65 221.5 14.2 1.7 1 1 0 1 1 1 1 Cation transport protein Neurensin PF14927.6 gi|299883457|ref|YP_003739009.1| - 0.06 13.1 0.1 4.5 7.0 0.0 3.2 3 0 0 3 3 3 0 Neurensin Usp PF00582.26 gi|299883458|ref|YP_003739010.1| - 4.4e-06 27.3 12.6 0.00031 21.3 3.3 3.2 2 2 0 2 2 2 2 Universal stress protein family ApoLp-III PF07464.11 gi|299883458|ref|YP_003739010.1| - 1.3 9.1 5.9 2.6 8.1 0.2 2.6 2 1 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) TrkA_N PF02254.18 gi|299883459|ref|YP_003739011.1| - 3.6e-26 91.7 3.5 4.3e-26 91.4 2.4 1.7 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|299883459|ref|YP_003739011.1| - 1.6e-12 47.1 2.3 2.7e-12 46.3 0.4 2.2 2 0 0 2 2 2 1 TrkA-C domain Sacchrp_dh_NADP PF03435.18 gi|299883459|ref|YP_003739011.1| - 7.6e-07 29.5 0.7 1.2e-06 28.8 0.7 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|299883459|ref|YP_003739011.1| - 1.5e-06 28.3 0.2 2.6e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Shikimate_DH PF01488.20 gi|299883459|ref|YP_003739011.1| - 4.1e-06 26.9 0.2 5.7e-06 26.4 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|299883459|ref|YP_003739011.1| - 2.4e-05 24.8 0.2 6.4e-05 23.5 0.2 1.8 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.13 gi|299883459|ref|YP_003739011.1| - 0.00013 21.6 0.4 0.00033 20.3 0.4 1.6 1 1 0 1 1 1 1 NmrA-like family DapB_N PF01113.20 gi|299883459|ref|YP_003739011.1| - 0.0011 19.1 1.1 0.0019 18.3 1.1 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.18 gi|299883459|ref|YP_003739011.1| - 0.0021 18.0 0.3 0.0035 17.3 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|299883459|ref|YP_003739011.1| - 0.003 16.9 1.4 0.0044 16.3 1.4 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain PglD_N PF17836.1 gi|299883459|ref|YP_003739011.1| - 0.0035 17.9 0.6 0.025 15.2 0.2 2.2 2 0 0 2 2 2 1 PglD N-terminal domain NAD_binding_7 PF13241.6 gi|299883459|ref|YP_003739011.1| - 0.0042 17.5 0.5 0.0067 16.8 0.2 1.5 2 0 0 2 2 1 1 Putative NAD(P)-binding XdhC_C PF13478.6 gi|299883459|ref|YP_003739011.1| - 0.014 15.9 0.2 0.019 15.4 0.2 1.4 1 1 0 1 1 1 0 XdhC Rossmann domain Gp_dh_N PF00044.24 gi|299883459|ref|YP_003739011.1| - 0.018 15.4 0.4 0.044 14.1 0.4 1.9 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|299883459|ref|YP_003739011.1| - 0.028 13.7 0.2 0.039 13.2 0.2 1.3 1 0 0 1 1 1 0 Thi4 family HDPD PF02924.14 gi|299883459|ref|YP_003739011.1| - 0.034 14.3 0.0 0.74 9.9 0.0 2.0 1 1 0 2 2 2 0 Bacteriophage lambda head decoration protein D GFO_IDH_MocA PF01408.22 gi|299883459|ref|YP_003739011.1| - 0.049 14.5 0.2 0.16 12.8 0.2 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.14 gi|299883459|ref|YP_003739011.1| - 0.055 12.7 0.3 0.091 12.0 0.3 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|299883459|ref|YP_003739011.1| - 0.096 12.0 0.1 0.14 11.5 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|299883459|ref|YP_003739011.1| - 0.1 12.8 0.0 0.35 11.1 0.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|299883459|ref|YP_003739011.1| - 0.14 11.7 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase TrkH PF02386.16 gi|299883460|ref|YP_003739012.1| - 3.3e-70 237.0 13.5 4.7e-70 236.5 13.5 1.1 1 0 0 1 1 1 1 Cation transport protein PHBC_N PF12551.8 gi|299883460|ref|YP_003739012.1| - 0.065 13.0 0.3 7.3 6.4 0.0 3.1 2 0 0 2 2 2 0 Poly-beta-hydroxybutyrate polymerase N terminal OppC_N PF12911.7 gi|299883460|ref|YP_003739012.1| - 0.47 10.5 0.0 0.47 10.5 0.0 3.6 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C TrkA_N PF02254.18 gi|299883461|ref|YP_003739013.1| - 5.1e-26 91.2 2.2 1.1e-25 90.2 2.2 1.5 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|299883461|ref|YP_003739013.1| - 2.3e-14 53.0 0.9 1.1e-12 47.6 0.1 2.4 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|299883461|ref|YP_003739013.1| - 1e-06 29.3 0.5 3.7e-06 27.4 0.4 2.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|299883461|ref|YP_003739013.1| - 5.7e-05 23.4 0.5 0.00012 22.3 0.5 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ATPgrasp_N PF18130.1 gi|299883461|ref|YP_003739013.1| - 0.00017 22.1 0.7 0.00036 21.0 0.7 1.6 1 0 0 1 1 1 1 ATP-grasp N-terminal domain NAD_binding_7 PF13241.6 gi|299883461|ref|YP_003739013.1| - 0.00022 21.6 0.2 0.00041 20.8 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|299883461|ref|YP_003739013.1| - 0.00029 20.9 0.1 0.00061 19.9 0.1 1.6 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|299883461|ref|YP_003739013.1| - 0.00093 18.8 1.0 0.022 14.4 0.2 2.4 1 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|299883461|ref|YP_003739013.1| - 0.0011 19.5 0.2 0.0084 16.7 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|299883461|ref|YP_003739013.1| - 0.0029 18.1 0.1 0.0048 17.4 0.1 1.4 1 0 0 1 1 1 1 XdhC Rossmann domain Peripla_BP_3 PF13377.6 gi|299883461|ref|YP_003739013.1| - 0.0051 17.2 0.2 0.0077 16.6 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein-like domain NAD_binding_2 PF03446.15 gi|299883461|ref|YP_003739013.1| - 0.006 16.8 0.0 0.0088 16.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|299883461|ref|YP_003739013.1| - 0.0067 16.3 1.5 0.019 14.9 1.0 1.8 1 1 1 2 2 2 1 NAD(P)H-binding GFO_IDH_MocA PF01408.22 gi|299883461|ref|YP_003739013.1| - 0.0067 17.2 0.3 0.024 15.5 0.3 1.9 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox_2 PF07992.14 gi|299883461|ref|YP_003739013.1| - 0.0071 15.6 0.1 0.21 10.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.26 gi|299883461|ref|YP_003739013.1| - 0.0073 16.3 0.1 0.02 14.9 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase PEP-utilizers PF00391.23 gi|299883461|ref|YP_003739013.1| - 0.0082 15.8 0.0 0.022 14.5 0.0 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain 3HCDH_N PF02737.18 gi|299883461|ref|YP_003739013.1| - 0.015 15.1 0.1 0.024 14.5 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|299883461|ref|YP_003739013.1| - 0.018 14.3 0.8 0.031 13.6 0.8 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PglD_N PF17836.1 gi|299883461|ref|YP_003739013.1| - 0.027 15.1 0.5 0.093 13.4 0.2 2.0 2 1 0 2 2 2 0 PglD N-terminal domain 2-Hacid_dh_C PF02826.19 gi|299883461|ref|YP_003739013.1| - 0.03 13.7 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|299883461|ref|YP_003739013.1| - 0.041 13.5 0.1 0.067 12.8 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|299883461|ref|YP_003739013.1| - 0.072 12.6 0.2 0.1 12.1 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family ThiF PF00899.21 gi|299883461|ref|YP_003739013.1| - 0.15 11.4 1.5 4.2 6.6 0.1 2.1 1 1 1 2 2 2 0 ThiF family Usp PF00582.26 gi|299883462|ref|YP_003739014.1| - 2.7e-12 47.4 0.2 3.2e-12 47.2 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family TrkA_C PF02080.21 gi|299883464|ref|YP_003739016.1| - 2.3e-10 40.1 0.1 5.3e-10 39.0 0.1 1.7 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.6 gi|299883464|ref|YP_003739016.1| - 1.8e-09 37.0 0.9 3.6e-09 36.1 0.9 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|299883464|ref|YP_003739016.1| - 1.1e-07 31.5 0.5 2e-07 30.7 0.5 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|299883464|ref|YP_003739016.1| - 7.2e-06 25.8 0.1 1.5e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.20 gi|299883464|ref|YP_003739016.1| - 3.6e-05 23.5 0.0 7.7e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|299883464|ref|YP_003739016.1| - 0.00019 21.1 0.2 0.00053 19.7 0.1 1.8 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|299883464|ref|YP_003739016.1| - 0.00041 20.3 0.0 0.0012 18.9 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|299883464|ref|YP_003739016.1| - 0.00062 19.6 0.0 0.0021 17.9 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|299883464|ref|YP_003739016.1| - 0.0031 17.4 0.6 0.073 13.1 0.1 3.1 3 1 1 4 4 4 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|299883464|ref|YP_003739016.1| - 0.0045 17.2 0.0 0.011 15.9 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|299883464|ref|YP_003739016.1| - 0.0054 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|299883464|ref|YP_003739016.1| - 0.0089 15.7 0.1 0.036 13.7 0.1 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|299883464|ref|YP_003739016.1| - 0.013 15.8 0.0 0.034 14.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.10 gi|299883464|ref|YP_003739016.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|299883464|ref|YP_003739016.1| - 0.025 14.4 0.0 0.06 13.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain FaeA PF04703.12 gi|299883464|ref|YP_003739016.1| - 0.027 14.9 1.1 0.074 13.4 0.1 2.1 3 0 0 3 3 2 0 FaeA-like protein HTH_36 PF13730.6 gi|299883464|ref|YP_003739016.1| - 0.04 13.9 0.0 0.095 12.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|299883464|ref|YP_003739016.1| - 0.053 13.6 0.0 0.21 11.8 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain DDRGK PF09756.9 gi|299883464|ref|YP_003739016.1| - 0.058 13.0 0.1 0.09 12.4 0.1 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_29 PF13551.6 gi|299883464|ref|YP_003739016.1| - 0.1 12.6 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Tnp_ISL3 PF13542.6 gi|299883464|ref|YP_003739016.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_CodY PF08222.11 gi|299883464|ref|YP_003739016.1| - 0.16 11.5 0.7 0.31 10.6 0.1 1.8 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_Mga PF08280.11 gi|299883464|ref|YP_003739016.1| - 0.18 11.9 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_24 PF13412.6 gi|299883465|ref|YP_003739017.1| - 1.4e-05 24.5 0.0 2.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF1421 PF07223.11 gi|299883465|ref|YP_003739017.1| - 0.0022 17.8 0.0 0.0037 17.1 0.0 1.4 1 0 0 1 1 1 1 UBA-like domain (DUF1421) PaaX PF07848.12 gi|299883465|ref|YP_003739017.1| - 0.015 15.5 0.0 0.023 14.9 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein MarR_2 PF12802.7 gi|299883465|ref|YP_003739017.1| - 0.019 14.8 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|299883465|ref|YP_003739017.1| - 0.038 13.9 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|299883465|ref|YP_003739017.1| - 0.054 13.4 0.0 0.077 12.9 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF4364 PF14277.6 gi|299883466|ref|YP_003739018.1| - 0.044 13.5 0.2 0.072 12.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) LisH PF08513.11 gi|299883466|ref|YP_003739018.1| - 0.1 12.6 1.2 1.6 8.8 0.5 2.5 2 0 0 2 2 2 0 LisH DUF2733 PF10813.8 gi|299883466|ref|YP_003739018.1| - 0.88 9.4 2.6 4.2 7.2 0.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2733) AAA_31 PF13614.6 gi|299883467|ref|YP_003739019.1| - 8e-20 71.5 0.0 1.2e-19 71.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|299883467|ref|YP_003739019.1| - 4.7e-09 36.4 0.0 6.8e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|299883467|ref|YP_003739019.1| - 9.7e-07 28.3 0.3 0.0037 16.6 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|299883467|ref|YP_003739019.1| - 4.6e-06 26.3 0.0 1.8e-05 24.3 0.0 1.8 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|299883467|ref|YP_003739019.1| - 0.0099 15.3 0.0 0.021 14.3 0.0 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|299883467|ref|YP_003739019.1| - 0.014 14.6 0.5 0.023 13.9 0.5 1.7 1 1 0 1 1 1 0 Anion-transporting ATPase Octapeptide PF03373.14 gi|299883467|ref|YP_003739019.1| - 0.33 11.4 2.4 12 6.8 0.2 3.0 2 0 0 2 2 2 0 Octapeptide repeat GRIP PF01465.20 gi|299883469|ref|YP_003739021.1| - 0.14 12.1 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 GRIP domain PIN PF01850.21 gi|299883470|ref|YP_003739022.1| - 1e-11 45.4 0.0 1.2e-11 45.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain HTH_20 PF12840.7 gi|299883471|ref|YP_003739023.1| - 9.6e-08 32.0 0.1 1.9e-07 31.0 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|299883471|ref|YP_003739023.1| - 8.9e-07 28.8 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|299883471|ref|YP_003739023.1| - 2.4e-05 24.1 0.1 3.9e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|299883471|ref|YP_003739023.1| - 0.00028 20.4 0.0 0.00052 19.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|299883471|ref|YP_003739023.1| - 0.00032 20.4 0.4 0.00073 19.3 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|299883471|ref|YP_003739023.1| - 0.00059 19.6 0.0 0.00087 19.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|299883471|ref|YP_003739023.1| - 0.00068 19.5 0.0 0.00096 19.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_17 PF12728.7 gi|299883471|ref|YP_003739023.1| - 0.00074 19.7 0.1 0.0018 18.4 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.11 gi|299883471|ref|YP_003739023.1| - 0.00076 19.0 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|299883471|ref|YP_003739023.1| - 0.003 17.5 0.0 0.0047 16.9 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|299883471|ref|YP_003739023.1| - 0.004 16.9 0.0 0.0067 16.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|299883471|ref|YP_003739023.1| - 0.013 15.1 0.3 0.023 14.3 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|299883471|ref|YP_003739023.1| - 0.027 14.0 0.0 0.059 12.9 0.0 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_50 PF18024.1 gi|299883471|ref|YP_003739023.1| - 0.028 14.0 0.0 0.15 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|299883471|ref|YP_003739023.1| - 0.031 14.2 0.1 0.072 13.0 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_30 PF13556.6 gi|299883471|ref|YP_003739023.1| - 0.062 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_38 PF13936.6 gi|299883471|ref|YP_003739023.1| - 0.064 13.0 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|299883471|ref|YP_003739023.1| - 0.065 13.2 0.0 0.099 12.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|299883471|ref|YP_003739023.1| - 0.083 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.20 gi|299883471|ref|YP_003739023.1| - 0.18 12.2 0.0 0.26 11.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Spc7 PF08317.11 gi|299883472|ref|YP_003739024.1| - 0.003 16.5 2.8 0.0063 15.4 2.8 1.4 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.12 gi|299883472|ref|YP_003739024.1| - 0.0035 17.4 1.9 0.0035 17.4 1.9 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.8 gi|299883472|ref|YP_003739024.1| - 0.0045 16.9 2.7 0.0045 16.9 2.7 1.8 2 0 0 2 2 1 1 TATA element modulatory factor 1 DNA binding DUF16 PF01519.16 gi|299883472|ref|YP_003739024.1| - 0.0051 17.3 1.5 0.0051 17.3 1.5 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF16 HrpB7 PF09486.10 gi|299883472|ref|YP_003739024.1| - 0.0053 17.2 1.3 0.012 16.0 1.3 1.6 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) YlqD PF11068.8 gi|299883472|ref|YP_003739024.1| - 0.0059 17.0 1.7 0.011 16.1 1.7 1.4 1 0 0 1 1 1 1 YlqD protein UPF0242 PF06785.11 gi|299883472|ref|YP_003739024.1| - 0.0093 16.1 0.7 0.015 15.4 0.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Lebercilin PF15619.6 gi|299883472|ref|YP_003739024.1| - 0.012 15.3 1.8 0.055 13.1 1.3 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF4404 PF14357.6 gi|299883472|ref|YP_003739024.1| - 0.015 15.9 2.6 0.42 11.3 2.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) SlyX PF04102.12 gi|299883472|ref|YP_003739024.1| - 0.019 15.5 8.2 0.042 14.5 4.9 2.8 2 1 1 3 3 3 0 SlyX Bacillus_HBL PF05791.11 gi|299883472|ref|YP_003739024.1| - 0.02 14.7 1.4 0.38 10.5 0.1 2.6 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF948 PF06103.11 gi|299883472|ref|YP_003739024.1| - 0.025 14.8 2.5 0.025 14.8 2.5 2.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.11 gi|299883472|ref|YP_003739024.1| - 0.04 14.3 2.1 3 8.3 0.1 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) BST2 PF16716.5 gi|299883472|ref|YP_003739024.1| - 0.047 14.3 3.4 0.047 14.3 3.4 2.2 3 0 0 3 3 1 0 Bone marrow stromal antigen 2 Atg14 PF10186.9 gi|299883472|ref|YP_003739024.1| - 0.049 12.7 0.2 0.053 12.6 0.2 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CENP-Q PF13094.6 gi|299883472|ref|YP_003739024.1| - 0.075 13.2 1.7 0.11 12.7 1.7 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2937 PF11157.8 gi|299883472|ref|YP_003739024.1| - 0.077 12.7 0.3 0.12 12.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) SKA1 PF07160.12 gi|299883472|ref|YP_003739024.1| - 0.087 12.7 4.3 0.074 12.9 2.7 1.7 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 ADH_N_2 PF16884.5 gi|299883472|ref|YP_003739024.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase MatP_C PF17414.2 gi|299883472|ref|YP_003739024.1| - 0.11 12.7 1.0 3.7 7.8 0.0 2.4 2 0 0 2 2 2 0 MatP C-terminal ribbon-helix-helix domain BLOC1_2 PF10046.9 gi|299883472|ref|YP_003739024.1| - 0.12 12.6 3.2 0.53 10.6 3.1 2.1 2 1 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.11 gi|299883472|ref|YP_003739024.1| - 0.13 12.4 3.4 0.17 11.9 1.6 1.9 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Apolipoprotein PF01442.18 gi|299883472|ref|YP_003739024.1| - 0.13 12.1 6.2 0.32 10.9 6.2 1.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Fzo_mitofusin PF04799.13 gi|299883472|ref|YP_003739024.1| - 0.13 11.8 1.1 0.23 11.0 1.1 1.4 1 0 0 1 1 1 0 fzo-like conserved region ADIP PF11559.8 gi|299883472|ref|YP_003739024.1| - 0.18 11.9 5.1 0.065 13.3 2.5 1.6 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding Laminin_II PF06009.12 gi|299883472|ref|YP_003739024.1| - 0.19 11.8 5.1 0.18 11.8 2.4 1.9 2 0 0 2 2 2 0 Laminin Domain II HSBP1 PF06825.12 gi|299883472|ref|YP_003739024.1| - 0.23 11.3 2.3 2.7 7.9 0.0 2.6 2 1 0 2 2 2 0 Heat shock factor binding protein 1 NPV_P10 PF05531.12 gi|299883472|ref|YP_003739024.1| - 0.29 11.6 5.3 0.91 10.0 4.0 2.4 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein DUF3349 PF11829.8 gi|299883472|ref|YP_003739024.1| - 0.33 11.7 2.6 0.44 11.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) DUF2205 PF10224.9 gi|299883472|ref|YP_003739024.1| - 0.38 10.8 4.3 0.51 10.4 3.2 1.8 1 1 1 2 2 2 0 Short coiled-coil protein DivIC PF04977.15 gi|299883472|ref|YP_003739024.1| - 0.63 9.9 6.5 2.2 8.1 5.8 2.1 1 1 1 2 2 2 0 Septum formation initiator CP12 PF02672.15 gi|299883472|ref|YP_003739024.1| - 0.72 10.6 6.4 10 7.0 3.2 3.5 3 1 1 4 4 4 0 CP12 domain HemX PF04375.14 gi|299883472|ref|YP_003739024.1| - 0.79 8.9 5.1 2.8 7.1 5.2 1.8 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase PhoU PF01895.19 gi|299883472|ref|YP_003739024.1| - 0.82 10.2 3.7 1 9.8 2.2 2.0 2 1 0 2 2 1 0 PhoU domain Phage_GPO PF05929.11 gi|299883472|ref|YP_003739024.1| - 1.1 8.9 7.0 0.43 10.2 2.7 1.9 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase ATG16 PF08614.11 gi|299883472|ref|YP_003739024.1| - 1.7 8.9 10.4 0.47 10.6 6.1 2.1 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) TBPIP_N PF15517.6 gi|299883473|ref|YP_003739025.1| - 0.063 13.3 0.0 0.063 13.3 0.0 1.2 1 0 0 1 1 1 0 TBP-interacting protein N-terminus # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014301.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014301.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014301.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014301.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:16:32 2019 # [ok]