#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
DDE_Tnp_1	PF01609.16	gi|299883391|ref|YP_003738944.1|	-	1e-07	31.7	0.2	2.1e-07	30.7	0.2	1.5	1	1	0	1	1	1	1	Transposase	DDE	domain
Resolvase	PF00239.16	gi|299883392|ref|YP_003738945.1|	-	5.1e-36	123.6	1.3	7e-36	123.1	0.9	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_24	PF13412.1	gi|299883393|ref|YP_003738946.1|	-	3.4e-14	51.9	0.0	6.3e-14	51.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|299883393|ref|YP_003738946.1|	-	1.5e-13	50.0	1.3	2.5e-13	49.3	0.1	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.17	gi|299883393|ref|YP_003738946.1|	-	1.1e-05	24.9	0.0	2.1e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|299883393|ref|YP_003738946.1|	-	2.6e-05	23.9	0.0	7e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|299883393|ref|YP_003738946.1|	-	4.7e-05	23.2	0.0	0.0001	22.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|299883393|ref|YP_003738946.1|	-	5.4e-05	22.7	0.0	0.00011	21.6	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.14	gi|299883393|ref|YP_003738946.1|	-	0.00022	20.8	0.0	0.00041	20.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_38	PF13936.1	gi|299883393|ref|YP_003738946.1|	-	0.0004	19.8	0.0	0.00084	18.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|299883393|ref|YP_003738946.1|	-	0.00047	19.7	0.0	0.0011	18.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|299883393|ref|YP_003738946.1|	-	0.0028	17.2	0.0	0.0061	16.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.1	gi|299883393|ref|YP_003738946.1|	-	0.0049	17.1	0.2	0.016	15.5	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
zf-C3HC4_3	PF13920.1	gi|299883393|ref|YP_003738946.1|	-	0.0098	15.5	1.8	0.02	14.5	1.3	1.5	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
HTH_IclR	PF09339.5	gi|299883393|ref|YP_003738946.1|	-	0.013	15.0	0.0	0.027	14.0	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Arc_trans_TRASH	PF08394.5	gi|299883393|ref|YP_003738946.1|	-	0.021	14.9	3.4	0.035	14.2	2.4	1.4	1	0	0	1	1	1	0	Archaeal	TRASH	domain
Fe_dep_repress	PF01325.14	gi|299883393|ref|YP_003738946.1|	-	0.028	14.3	0.0	0.055	13.4	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.15	gi|299883393|ref|YP_003738946.1|	-	0.028	14.0	0.0	0.058	13.0	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
zf-FCS	PF06467.9	gi|299883393|ref|YP_003738946.1|	-	0.035	13.7	3.2	0.063	12.9	2.2	1.4	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
LexA_DNA_bind	PF01726.11	gi|299883393|ref|YP_003738946.1|	-	0.059	12.9	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_Mga	PF08280.6	gi|299883393|ref|YP_003738946.1|	-	0.066	12.9	0.0	0.14	11.9	0.0	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Tbf5	PF06331.7	gi|299883393|ref|YP_003738946.1|	-	0.075	12.8	0.0	0.23	11.2	0.0	1.9	1	1	0	1	1	1	0	Transcription	factor	TFIIH	complex	subunit	Tfb5
DUF2250	PF10007.4	gi|299883393|ref|YP_003738946.1|	-	0.076	12.9	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HHH_6	PF14579.1	gi|299883393|ref|YP_003738946.1|	-	0.083	12.9	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HTH_29	PF13551.1	gi|299883393|ref|YP_003738946.1|	-	0.087	12.9	0.1	0.27	11.3	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_Tnp_ISL3	PF13542.1	gi|299883393|ref|YP_003738946.1|	-	0.09	11.9	0.0	0.23	10.6	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Sigma70_r4_2	PF08281.7	gi|299883393|ref|YP_003738946.1|	-	0.11	12.0	0.0	0.25	10.8	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
ATPase-cat_bd	PF12156.3	gi|299883393|ref|YP_003738946.1|	-	0.3	11.6	4.3	0.77	10.3	2.7	1.8	2	0	0	2	2	2	0	Putative	metal-binding	domain	of	cation	transport	ATPase
LIM	PF00412.17	gi|299883393|ref|YP_003738946.1|	-	0.3	11.1	3.3	0.56	10.3	2.3	1.4	1	0	0	1	1	1	0	LIM	domain
FeoC	PF09012.5	gi|299883393|ref|YP_003738946.1|	-	3.1	7.5	0.0	3.1	7.5	0.0	2.7	2	1	0	2	2	1	0	FeoC	like	transcriptional	regulator
DUF326	PF03860.11	gi|299883394|ref|YP_003738947.1|	-	0.00037	20.1	22.5	0.0047	16.6	3.3	5.4	4	2	0	4	4	4	3	Domain	of	Unknown	Function	(DUF326)
FUSC	PF04632.7	gi|299883394|ref|YP_003738947.1|	-	0.1	11.0	0.5	0.11	10.9	0.3	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Pentapeptide	PF00805.17	gi|299883395|ref|YP_003738948.1|	-	1.5e-22	78.3	33.7	3.5e-09	35.6	4.4	3.6	2	1	2	4	4	4	4	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|299883395|ref|YP_003738948.1|	-	1.2e-12	47.4	8.2	2.2e-08	33.8	0.2	2.2	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|299883395|ref|YP_003738948.1|	-	1.2e-10	41.0	7.3	0.00016	21.4	3.5	3.1	1	1	1	2	2	2	2	Pentapeptide	repeats	(9	copies)
Pentapeptide	PF00805.17	gi|299883396|ref|YP_003738949.1|	-	2.9e-14	51.9	2.2	2e-08	33.2	0.1	2.1	1	1	1	2	2	2	2	Pentapeptide	repeats	(8	copies)
Pentapeptide_4	PF13599.1	gi|299883396|ref|YP_003738949.1|	-	2.7e-05	23.8	0.0	5.8e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	Pentapeptide	repeats	(9	copies)
Pentapeptide_3	PF13576.1	gi|299883396|ref|YP_003738949.1|	-	0.00021	21.1	0.0	0.0039	17.0	0.0	2.1	1	1	0	1	1	1	1	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.11	gi|299883397|ref|YP_003738950.1|	-	5e-10	38.9	7.3	1.1e-09	37.8	4.6	2.0	1	1	1	2	2	2	1	Ion	channel
DUF63	PF01889.12	gi|299883398|ref|YP_003738951.1|	-	0.00011	22.4	0.8	0.00013	22.1	0.6	1.2	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
DUF4383	PF14325.1	gi|299883398|ref|YP_003738951.1|	-	0.52	10.3	6.3	0.87	9.6	0.3	2.5	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4383)
Methyltransf_11	PF08241.7	gi|299883399|ref|YP_003738952.1|	-	2e-20	73.0	0.0	3.2e-20	72.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|299883399|ref|YP_003738952.1|	-	3.4e-20	72.1	0.0	4.1e-20	71.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|299883399|ref|YP_003738952.1|	-	8.8e-19	67.5	0.0	1.1e-18	67.2	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_18	PF12847.2	gi|299883399|ref|YP_003738952.1|	-	9.3e-19	68.0	0.1	1.9e-18	67.1	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|299883399|ref|YP_003738952.1|	-	4.1e-17	62.4	0.0	5.7e-17	62.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|299883399|ref|YP_003738952.1|	-	3.1e-15	56.2	0.0	4.4e-15	55.7	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_23	PF13489.1	gi|299883399|ref|YP_003738952.1|	-	2.9e-14	53.1	0.0	3.9e-14	52.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|299883399|ref|YP_003738952.1|	-	3e-13	49.9	0.0	4.5e-13	49.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|299883399|ref|YP_003738952.1|	-	5.1e-12	45.8	0.9	8.3e-12	45.1	0.6	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|299883399|ref|YP_003738952.1|	-	2.4e-06	27.2	0.0	3.3e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
MetW	PF07021.7	gi|299883399|ref|YP_003738952.1|	-	7.7e-05	22.1	0.0	0.00011	21.5	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.9	gi|299883399|ref|YP_003738952.1|	-	0.00039	19.8	0.0	0.0011	18.3	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.15	gi|299883399|ref|YP_003738952.1|	-	0.00039	19.5	0.0	0.00049	19.2	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_4	PF02390.12	gi|299883399|ref|YP_003738952.1|	-	0.00044	19.3	0.0	0.0014	17.6	0.0	1.7	2	0	0	2	2	2	1	Putative	methyltransferase
TPMT	PF05724.6	gi|299883399|ref|YP_003738952.1|	-	0.0032	16.9	0.0	0.0094	15.4	0.0	1.7	1	1	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
RrnaAD	PF00398.15	gi|299883399|ref|YP_003738952.1|	-	0.014	14.4	0.0	0.019	14.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.14	gi|299883399|ref|YP_003738952.1|	-	0.015	15.2	0.0	0.075	13.0	0.0	1.9	1	1	1	2	2	2	0	FtsJ-like	methyltransferase
Amidohydro_4	PF13147.1	gi|299883399|ref|YP_003738952.1|	-	0.017	15.1	0.2	0.02	14.9	0.1	1.1	1	0	0	1	1	1	0	Amidohydrolase
Fibrillarin	PF01269.12	gi|299883399|ref|YP_003738952.1|	-	0.024	13.5	0.0	0.036	12.9	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Methyltransf_3	PF01596.12	gi|299883399|ref|YP_003738952.1|	-	0.036	13.0	0.0	0.07	12.1	0.0	1.3	1	1	0	1	1	1	0	O-methyltransferase
Methyltransf_32	PF13679.1	gi|299883399|ref|YP_003738952.1|	-	0.048	13.3	0.0	0.061	13.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
E1-E2_ATPase	PF00122.15	gi|299883400|ref|YP_003738953.1|	-	6.2e-55	185.7	1.0	6.2e-55	185.7	0.7	2.9	4	1	0	4	4	4	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|299883400|ref|YP_003738953.1|	-	4.4e-39	135.1	6.6	7.1e-39	134.4	4.6	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|299883400|ref|YP_003738953.1|	-	5.5e-16	59.3	0.2	1e-15	58.3	0.1	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|299883400|ref|YP_003738953.1|	-	2.2e-05	24.1	0.2	0.0055	16.3	0.1	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Cu-oxidase_3	PF07732.10	gi|299883401|ref|YP_003738954.1|	-	1.8e-40	137.3	0.2	1.2e-32	112.0	0.0	3.3	3	0	0	3	3	3	3	Multicopper	oxidase
Cu-oxidase_2	PF07731.9	gi|299883401|ref|YP_003738954.1|	-	3.8e-36	123.6	8.2	7.4e-21	74.0	3.4	5.2	3	2	0	3	3	3	3	Multicopper	oxidase
Cu-oxidase	PF00394.17	gi|299883401|ref|YP_003738954.1|	-	3.8e-25	88.6	0.0	2.4e-22	79.5	0.0	2.4	2	0	0	2	2	2	2	Multicopper	oxidase
Cupredoxin_1	PF13473.1	gi|299883401|ref|YP_003738954.1|	-	3.7e-05	23.5	0.0	0.0071	16.2	0.0	3.5	4	0	0	4	4	4	1	Cupredoxin-like	domain
SHOCT	PF09851.4	gi|299883402|ref|YP_003738955.1|	-	1e-08	34.3	3.1	1.4e-08	33.9	2.2	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.6	gi|299883402|ref|YP_003738955.1|	-	2.4e-05	23.9	1.8	2.4e-05	23.9	1.3	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
DUF3007	PF11460.3	gi|299883402|ref|YP_003738955.1|	-	0.00096	19.1	0.0	0.0012	18.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3007)
RseC_MucC	PF04246.7	gi|299883402|ref|YP_003738955.1|	-	0.011	15.3	2.0	0.015	14.8	1.4	1.3	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF1517	PF07466.6	gi|299883402|ref|YP_003738955.1|	-	0.052	12.5	0.7	0.059	12.3	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1517)
GvpG	PF05120.7	gi|299883402|ref|YP_003738955.1|	-	0.14	11.9	0.3	0.23	11.2	0.2	1.3	1	0	0	1	1	1	0	Gas	vesicle	protein	G
IncA	PF04156.9	gi|299883402|ref|YP_003738955.1|	-	0.17	11.4	2.7	0.62	9.6	1.9	1.8	1	1	0	1	1	1	0	IncA	protein
DUF2878	PF11086.3	gi|299883402|ref|YP_003738955.1|	-	0.54	10.2	4.9	0.68	9.9	3.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2878)
DUF2938	PF11158.3	gi|299883402|ref|YP_003738955.1|	-	1.2	8.4	5.3	4.6	6.5	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2938)
DUF1469	PF07332.6	gi|299883402|ref|YP_003738955.1|	-	1.3	8.7	5.8	2	8.1	4.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
DUF3154	PF11351.3	gi|299883402|ref|YP_003738955.1|	-	3	7.6	4.4	4.1	7.1	3.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3154)
DUF302	PF03625.9	gi|299883403|ref|YP_003738956.1|	-	1.8e-26	91.5	0.0	2.6e-26	90.9	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
HMA	PF00403.21	gi|299883404|ref|YP_003738957.1|	-	1.1e-16	60.6	0.1	1.3e-16	60.5	0.1	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
HTH_24	PF13412.1	gi|299883405|ref|YP_003738958.1|	-	7.1e-16	57.3	0.0	1.2e-15	56.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|299883405|ref|YP_003738958.1|	-	7.8e-16	57.3	0.3	1.6e-15	56.3	0.2	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.17	gi|299883405|ref|YP_003738958.1|	-	5.6e-06	25.9	0.0	9.2e-06	25.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|299883405|ref|YP_003738958.1|	-	1.8e-05	24.3	0.2	4.9e-05	22.9	0.1	1.8	2	0	0	2	2	1	1	MarR	family
HTH_5	PF01022.15	gi|299883405|ref|YP_003738958.1|	-	1.9e-05	24.2	0.0	3e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|299883405|ref|YP_003738958.1|	-	6e-05	22.7	0.0	0.00015	21.4	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|299883405|ref|YP_003738958.1|	-	0.0012	18.3	0.0	0.0024	17.4	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|299883405|ref|YP_003738958.1|	-	0.0013	19.0	0.1	0.0025	18.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|299883405|ref|YP_003738958.1|	-	0.0026	17.4	0.0	0.0062	16.2	0.0	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|299883405|ref|YP_003738958.1|	-	0.0031	17.4	0.0	0.0091	15.9	0.0	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Arc_trans_TRASH	PF08394.5	gi|299883405|ref|YP_003738958.1|	-	0.0039	17.2	0.7	0.0073	16.4	0.5	1.5	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_23	PF13384.1	gi|299883405|ref|YP_003738958.1|	-	0.022	14.3	0.0	0.048	13.3	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2296	PF10058.4	gi|299883405|ref|YP_003738958.1|	-	0.027	14.2	0.3	0.068	12.9	0.2	1.7	1	0	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
HTH_28	PF13518.1	gi|299883405|ref|YP_003738958.1|	-	0.032	14.2	0.0	0.083	12.9	0.0	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
zf-FCS	PF06467.9	gi|299883405|ref|YP_003738958.1|	-	0.04	13.5	0.8	0.069	12.8	0.5	1.3	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
ATPase-cat_bd	PF12156.3	gi|299883405|ref|YP_003738958.1|	-	0.042	14.3	3.2	0.074	13.5	2.2	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
LexA_DNA_bind	PF01726.11	gi|299883405|ref|YP_003738958.1|	-	0.057	12.9	0.0	0.18	11.3	0.0	1.9	2	1	0	2	2	1	0	LexA	DNA	binding	domain
DUF1364	PF07102.7	gi|299883405|ref|YP_003738958.1|	-	0.063	13.1	0.6	0.11	12.3	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1364)
LIM	PF00412.17	gi|299883405|ref|YP_003738958.1|	-	0.066	13.2	2.4	0.15	12.1	1.7	1.6	1	0	0	1	1	1	0	LIM	domain
HTH_11	PF08279.7	gi|299883405|ref|YP_003738958.1|	-	0.095	12.3	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
Baculo_ME53	PF06061.6	gi|299883405|ref|YP_003738958.1|	-	0.17	10.8	3.7	2.2	7.1	0.0	2.9	2	1	1	3	3	3	0	Baculoviridae	ME53
Nudix_N_2	PF14803.1	gi|299883405|ref|YP_003738958.1|	-	0.23	11.1	2.1	0.58	9.8	1.4	1.6	1	1	0	1	1	1	0	Nudix	N-terminal
CpXC	PF14353.1	gi|299883405|ref|YP_003738958.1|	-	3.8	7.4	6.1	95	2.9	0.1	2.4	1	1	1	2	2	2	0	CpXC	protein
Hydrolase	PF00702.21	gi|299883406|ref|YP_003738959.1|	-	7.2e-52	176.9	9.6	7.2e-52	176.9	6.7	1.7	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.15	gi|299883406|ref|YP_003738959.1|	-	8.1e-52	175.5	0.2	1.5e-51	174.6	0.2	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
HMA	PF00403.21	gi|299883406|ref|YP_003738959.1|	-	5.6e-27	93.6	0.5	5.7e-12	45.6	0.0	3.1	3	0	0	3	3	3	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|299883406|ref|YP_003738959.1|	-	1.3e-18	67.9	0.1	5e-18	65.9	0.1	2.0	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|299883406|ref|YP_003738959.1|	-	1.7e-05	24.5	1.3	0.018	14.6	0.4	2.7	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
MFP2b	PF12150.3	gi|299883406|ref|YP_003738959.1|	-	0.14	10.8	0.0	0.27	9.9	0.0	1.4	1	0	0	1	1	1	0	Cytosolic	motility	protein
DoxX	PF07681.7	gi|299883408|ref|YP_003738961.1|	-	6.3e-08	32.9	8.4	2.3e-07	31.1	5.8	1.9	1	1	0	1	1	1	1	DoxX
DUF308	PF03729.8	gi|299883408|ref|YP_003738961.1|	-	0.01	15.7	0.4	0.01	15.7	0.2	2.9	2	1	1	3	3	3	0	Short	repeat	of	unknown	function	(DUF308)
DoxD	PF04173.8	gi|299883408|ref|YP_003738961.1|	-	0.14	11.8	5.2	0.26	10.9	3.6	1.5	1	1	0	1	1	1	0	TQO	small	subunit	DoxD
DUF318	PF03773.8	gi|299883409|ref|YP_003738962.1|	-	8.9e-45	152.9	13.2	1.2e-44	152.5	9.2	1.1	1	0	0	1	1	1	1	Predicted	permease
YHS	PF04945.8	gi|299883409|ref|YP_003738962.1|	-	2.7e-16	59.1	7.4	1e-11	44.4	1.4	2.3	2	0	0	2	2	2	2	YHS	domain
zf-FCS	PF06467.9	gi|299883409|ref|YP_003738962.1|	-	1.7e-05	24.3	3.5	0.0089	15.6	0.1	2.4	2	0	0	2	2	2	2	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ribosomal_L24e	PF01246.15	gi|299883409|ref|YP_003738962.1|	-	0.045	13.6	0.0	9	6.2	0.0	2.4	2	0	0	2	2	2	0	Ribosomal	protein	L24e
zf-HIT	PF04438.11	gi|299883409|ref|YP_003738962.1|	-	0.058	13.0	0.4	0.64	9.7	0.0	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
RPAP2_Rtr1	PF04181.8	gi|299883409|ref|YP_003738962.1|	-	0.24	11.5	1.0	16	5.6	0.0	2.2	2	0	0	2	2	2	0	Rtr1/RPAP2	family
DUF2256	PF10013.4	gi|299883409|ref|YP_003738962.1|	-	4.4	7.1	6.7	65	3.3	0.4	3.2	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
DUF2116	PF09889.4	gi|299883409|ref|YP_003738962.1|	-	7.6	6.4	10.1	8.6	6.2	0.1	3.9	3	0	0	3	3	3	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Methyltransf_11	PF08241.7	gi|299883411|ref|YP_003738964.1|	-	1.1e-14	54.6	0.0	4.8e-14	52.6	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|299883411|ref|YP_003738964.1|	-	4.2e-14	52.3	0.0	1.1e-13	51.0	0.0	1.5	1	1	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|299883411|ref|YP_003738964.1|	-	6.1e-11	42.3	0.0	1.1e-10	41.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|299883411|ref|YP_003738964.1|	-	2e-09	37.7	0.0	5.9e-09	36.2	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|299883411|ref|YP_003738964.1|	-	1.2e-08	35.0	0.3	2.2e-08	34.1	0.2	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|299883411|ref|YP_003738964.1|	-	4.1e-07	30.5	0.0	4.8e-06	27.1	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|299883411|ref|YP_003738964.1|	-	4.3e-06	26.0	0.0	6.1e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.7	gi|299883411|ref|YP_003738964.1|	-	2.4e-05	24.7	0.0	0.00024	21.5	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|299883411|ref|YP_003738964.1|	-	0.0061	16.1	0.0	0.031	13.8	0.0	1.9	2	0	0	2	2	2	1	RNA	cap	guanine-N2	methyltransferase
CMAS	PF02353.15	gi|299883411|ref|YP_003738964.1|	-	0.012	14.7	0.0	0.018	14.1	0.0	1.3	1	1	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.6	gi|299883411|ref|YP_003738964.1|	-	0.049	13.0	0.0	0.076	12.3	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
MTS	PF05175.9	gi|299883411|ref|YP_003738964.1|	-	0.058	12.7	0.0	0.09	12.1	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
dTDP_sugar_isom	PF00908.12	gi|299883411|ref|YP_003738964.1|	-	0.084	12.1	0.0	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	dTDP-4-dehydrorhamnose	3,5-epimerase
AAA_10	PF12846.2	gi|299883412|ref|YP_003738965.1|	-	1.1e-21	77.5	0.1	3.8e-21	75.8	0.0	1.8	2	0	0	2	2	2	1	AAA-like	domain
TrwB_AAD_bind	PF10412.4	gi|299883412|ref|YP_003738965.1|	-	4.4e-08	32.1	0.0	0.0019	16.8	0.0	2.3	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.2	gi|299883412|ref|YP_003738965.1|	-	0.0001	22.1	0.0	0.00059	19.7	0.0	2.3	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
DUF87	PF01935.12	gi|299883412|ref|YP_003738965.1|	-	0.00088	19.1	0.5	0.013	15.3	0.4	2.5	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|299883413|ref|YP_003738966.1|	-	4.2e-23	82.2	0.2	1.2e-22	80.6	0.0	1.9	2	1	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|299883413|ref|YP_003738966.1|	-	7e-05	22.9	0.2	0.017	15.2	0.0	3.4	3	0	0	3	3	3	1	AAA	domain
NACHT	PF05729.7	gi|299883413|ref|YP_003738966.1|	-	0.0029	17.2	0.0	0.0052	16.4	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|299883413|ref|YP_003738966.1|	-	0.014	14.8	0.0	0.11	11.9	0.0	2.2	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_16	PF13191.1	gi|299883413|ref|YP_003738966.1|	-	0.026	14.5	1.0	0.22	11.4	0.0	2.8	3	0	0	3	3	3	0	AAA	ATPase	domain
YqhG	PF11079.3	gi|299883413|ref|YP_003738966.1|	-	0.031	13.0	0.1	0.061	12.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	protein	YqhG	of	unknown	function
ABC_tran	PF00005.22	gi|299883413|ref|YP_003738966.1|	-	0.057	13.7	0.1	0.36	11.1	0.0	2.4	2	0	0	2	2	2	0	ABC	transporter
cobW	PF02492.14	gi|299883413|ref|YP_003738966.1|	-	0.1	12.0	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Arch_ATPase	PF01637.13	gi|299883413|ref|YP_003738966.1|	-	0.17	11.5	0.0	0.39	10.3	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
NfeD	PF01957.13	gi|299883414|ref|YP_003738967.1|	-	0.011	15.9	2.2	0.012	15.7	1.5	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
YIF1	PF03878.10	gi|299883414|ref|YP_003738967.1|	-	0.13	11.3	2.6	0.16	11.1	1.8	1.0	1	0	0	1	1	1	0	YIF1
DUF4231	PF14015.1	gi|299883414|ref|YP_003738967.1|	-	0.26	11.3	3.8	0.34	10.8	2.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
FumaraseC_C	PF10415.4	gi|299883417|ref|YP_003738970.1|	-	0.00059	19.8	0.1	0.0008	19.4	0.0	1.2	1	0	0	1	1	1	1	Fumarase	C	C-terminus
MnhB	PF04039.8	gi|299883418|ref|YP_003738971.1|	-	0.0063	16.5	3.6	0.0063	16.5	2.5	1.6	2	0	0	2	2	2	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
Beta_helix	PF13229.1	gi|299883419|ref|YP_003738972.1|	-	0.00026	20.7	10.7	0.002	17.9	1.8	3.1	3	1	0	3	3	3	2	Right	handed	beta	helix	region
UCR_Fe-S_N	PF10399.4	gi|299883419|ref|YP_003738972.1|	-	2.7	7.2	5.1	3.5	6.8	0.1	2.4	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
CASP_C	PF08172.7	gi|299883421|ref|YP_003738974.1|	-	8.6e-06	24.9	4.3	1.2e-05	24.4	2.9	1.2	1	0	0	1	1	1	1	CASP	C	terminal
bZIP_1	PF00170.16	gi|299883421|ref|YP_003738974.1|	-	1.7e-05	24.7	3.2	3.2e-05	23.8	2.3	1.5	1	0	0	1	1	1	1	bZIP	transcription	factor
bZIP_2	PF07716.10	gi|299883421|ref|YP_003738974.1|	-	0.00013	21.7	3.3	0.00026	20.7	2.3	1.6	1	0	0	1	1	1	1	Basic	region	leucine	zipper
DUF904	PF06005.7	gi|299883421|ref|YP_003738974.1|	-	0.00037	20.7	6.6	0.00068	19.8	4.5	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF904)
DivIC	PF04977.10	gi|299883421|ref|YP_003738974.1|	-	0.00072	18.9	3.1	0.0011	18.4	2.1	1.3	1	0	0	1	1	1	1	Septum	formation	initiator
GAS	PF13851.1	gi|299883421|ref|YP_003738974.1|	-	0.0014	17.8	4.0	0.0018	17.4	2.7	1.2	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
IncA	PF04156.9	gi|299883421|ref|YP_003738974.1|	-	0.0026	17.3	2.2	0.0026	17.3	1.6	1.2	1	0	0	1	1	1	1	IncA	protein
CALCOCO1	PF07888.6	gi|299883421|ref|YP_003738974.1|	-	0.0026	16.1	1.0	0.0026	16.1	0.7	1.1	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Filament	PF00038.16	gi|299883421|ref|YP_003738974.1|	-	0.0038	16.7	2.1	0.0047	16.4	1.5	1.1	1	0	0	1	1	1	1	Intermediate	filament	protein
ERM	PF00769.14	gi|299883421|ref|YP_003738974.1|	-	0.0041	16.6	1.7	0.0052	16.3	1.2	1.1	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
ATG16	PF08614.6	gi|299883421|ref|YP_003738974.1|	-	0.0098	15.7	2.7	0.013	15.3	1.9	1.3	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
TMF_DNA_bd	PF12329.3	gi|299883421|ref|YP_003738974.1|	-	0.012	15.4	1.2	0.024	14.4	0.8	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Kinetocho_Slk19	PF12709.2	gi|299883421|ref|YP_003738974.1|	-	0.012	15.6	2.0	0.02	14.9	1.4	1.4	1	0	0	1	1	1	0	Central	kinetochore-associated
HALZ	PF02183.13	gi|299883421|ref|YP_003738974.1|	-	0.016	14.9	4.8	0.036	13.7	3.3	1.7	1	1	0	1	1	1	0	Homeobox	associated	leucine	zipper
CENP-F_leu_zip	PF10473.4	gi|299883421|ref|YP_003738974.1|	-	0.016	15.0	5.6	0.024	14.5	3.9	1.3	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF869	PF05911.6	gi|299883421|ref|YP_003738974.1|	-	0.022	13.0	2.1	0.027	12.7	1.5	1.0	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF869)
Prefoldin_2	PF01920.15	gi|299883421|ref|YP_003738974.1|	-	0.024	14.3	1.6	0.034	13.9	1.1	1.3	1	0	0	1	1	1	0	Prefoldin	subunit
Glyoxalase_3	PF13468.1	gi|299883421|ref|YP_003738974.1|	-	0.028	14.3	0.1	0.033	14.1	0.1	1.1	1	0	0	1	1	1	0	Glyoxalase-like	domain
ADIP	PF11559.3	gi|299883421|ref|YP_003738974.1|	-	0.03	14.2	2.4	0.037	13.9	1.7	1.2	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Rootletin	PF15035.1	gi|299883421|ref|YP_003738974.1|	-	0.032	14.2	3.0	0.03	14.3	2.1	1.1	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
TBPIP	PF07106.8	gi|299883421|ref|YP_003738974.1|	-	0.033	13.7	1.4	0.039	13.4	1.0	1.2	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF4337	PF14235.1	gi|299883421|ref|YP_003738974.1|	-	0.035	13.9	0.3	0.044	13.6	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
DUF972	PF06156.8	gi|299883421|ref|YP_003738974.1|	-	0.044	14.1	1.7	0.066	13.5	1.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
WEMBL	PF05701.6	gi|299883421|ref|YP_003738974.1|	-	0.049	12.0	2.8	0.059	11.8	1.9	1.0	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
APG6	PF04111.7	gi|299883421|ref|YP_003738974.1|	-	0.05	12.6	3.5	0.062	12.3	2.4	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
FlaC_arch	PF05377.6	gi|299883421|ref|YP_003738974.1|	-	0.058	13.3	3.9	0.073	12.9	2.3	1.5	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
RTBV_P46	PF06216.6	gi|299883421|ref|YP_003738974.1|	-	0.063	12.1	0.8	0.077	11.8	0.6	1.1	1	0	0	1	1	1	0	Rice	tungro	bacilliform	virus	P46	protein
Herpes_BLRF2	PF05812.7	gi|299883421|ref|YP_003738974.1|	-	0.069	12.9	0.8	0.098	12.4	0.5	1.3	1	0	0	1	1	1	0	Herpesvirus	BLRF2	protein
Spc24	PF08286.6	gi|299883421|ref|YP_003738974.1|	-	0.12	12.1	2.3	0.2	11.3	1.6	1.4	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF641	PF04859.7	gi|299883421|ref|YP_003738974.1|	-	0.13	12.0	0.7	0.16	11.6	0.5	1.2	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
Ax_dynein_light	PF10211.4	gi|299883421|ref|YP_003738974.1|	-	0.13	12.1	2.5	0.16	11.7	1.8	1.1	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
Bap31	PF05529.7	gi|299883421|ref|YP_003738974.1|	-	0.13	11.7	0.4	0.15	11.5	0.3	1.1	1	0	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
DUF1319	PF07028.6	gi|299883421|ref|YP_003738974.1|	-	0.14	12.3	2.0	0.15	12.2	1.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1319)
DivIVA	PF05103.8	gi|299883421|ref|YP_003738974.1|	-	0.15	12.1	2.3	0.21	11.6	1.6	1.2	1	0	0	1	1	1	0	DivIVA	protein
DUF3972	PF13118.1	gi|299883421|ref|YP_003738974.1|	-	0.19	11.8	2.2	0.28	11.2	1.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3972)
V_ATPase_I	PF01496.14	gi|299883421|ref|YP_003738974.1|	-	0.33	8.7	1.4	0.38	8.5	1.0	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
TSC22	PF01166.13	gi|299883421|ref|YP_003738974.1|	-	3.5	7.6	11.0	14	5.7	6.2	2.6	1	1	1	2	2	2	0	TSC-22/dip/bun	family
HTH_23	PF13384.1	gi|299883423|ref|YP_003738976.1|	-	0.024	14.3	0.0	0.032	13.8	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_29	PF13551.1	gi|299883423|ref|YP_003738976.1|	-	0.028	14.5	0.1	0.044	13.9	0.0	1.4	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_32	PF13565.1	gi|299883423|ref|YP_003738976.1|	-	0.09	13.5	0.0	0.17	12.6	0.0	1.4	1	1	0	1	1	1	0	Homeodomain-like	domain
SWIM	PF04434.12	gi|299883424|ref|YP_003738977.1|	-	0.1	12.1	0.2	0.16	11.4	0.1	1.4	1	0	0	1	1	1	0	SWIM	zinc	finger
E1-E2_ATPase	PF00122.15	gi|299883425|ref|YP_003738978.1|	-	9.9e-55	185.0	0.8	2.4e-54	183.7	0.0	2.0	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|299883425|ref|YP_003738978.1|	-	1.1e-48	166.4	8.6	3.9e-48	164.7	4.9	2.4	3	0	0	3	3	3	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|299883425|ref|YP_003738978.1|	-	3.9e-15	56.5	0.6	9.9e-15	55.1	0.4	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|299883425|ref|YP_003738978.1|	-	4.4e-14	52.3	2.0	6.7e-14	51.7	0.0	2.5	3	0	0	3	3	3	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.7	gi|299883425|ref|YP_003738978.1|	-	1.3e-05	24.9	0.8	0.0054	16.3	0.4	2.4	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
VWA_CoxE	PF05762.9	gi|299883425|ref|YP_003738978.1|	-	0.026	13.6	0.1	0.046	12.8	0.1	1.3	1	0	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
HTH_10	PF04967.7	gi|299883426|ref|YP_003738979.1|	-	3.5e-15	55.3	0.0	5.7e-15	54.6	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.2	gi|299883426|ref|YP_003738979.1|	-	0.00012	21.6	0.1	0.00044	19.8	0.0	2.0	2	1	0	2	2	2	1	MarR	family
HTH_30	PF13556.1	gi|299883426|ref|YP_003738979.1|	-	0.00019	20.9	0.3	0.00099	18.6	0.1	2.1	2	0	0	2	2	2	1	PucR	C-terminal	helix-turn-helix	domain
HTH_8	PF02954.14	gi|299883426|ref|YP_003738979.1|	-	0.00093	18.6	0.1	0.002	17.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_20	PF12840.2	gi|299883426|ref|YP_003738979.1|	-	0.0048	16.6	0.5	0.023	14.5	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|299883426|ref|YP_003738979.1|	-	0.016	14.6	0.0	0.031	13.6	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_1	PF00126.22	gi|299883426|ref|YP_003738979.1|	-	0.036	13.7	0.5	0.86	9.3	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_IclR	PF09339.5	gi|299883426|ref|YP_003738979.1|	-	0.039	13.5	0.1	0.11	12.0	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|299883426|ref|YP_003738979.1|	-	0.063	12.9	0.0	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PsbP	PF01789.11	gi|299883427|ref|YP_003738980.1|	-	0.14	11.5	0.0	0.17	11.3	0.0	1.0	1	0	0	1	1	1	0	PsbP
DUF1640	PF07798.6	gi|299883428|ref|YP_003738981.1|	-	0.022	14.8	0.1	0.17	11.9	0.0	2.1	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1640)
Reo_sigmaC	PF04582.7	gi|299883429|ref|YP_003738982.1|	-	0.00054	19.2	0.4	0.00078	18.7	0.2	1.1	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
IncA	PF04156.9	gi|299883429|ref|YP_003738982.1|	-	0.0016	18.0	1.1	0.0025	17.4	0.8	1.3	1	0	0	1	1	1	1	IncA	protein
DUF1664	PF07889.7	gi|299883429|ref|YP_003738982.1|	-	0.0023	17.7	3.9	0.0051	16.6	1.4	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1664)
TMF_DNA_bd	PF12329.3	gi|299883429|ref|YP_003738982.1|	-	0.0033	17.2	7.6	0.01	15.6	4.3	2.1	1	1	1	2	2	2	1	TATA	element	modulatory	factor	1	DNA	binding
ATG16	PF08614.6	gi|299883429|ref|YP_003738982.1|	-	0.0036	17.1	3.0	0.0068	16.2	2.0	1.4	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Bacillus_HBL	PF05791.6	gi|299883429|ref|YP_003738982.1|	-	0.0053	16.1	0.6	0.015	14.6	0.2	1.8	2	0	0	2	2	2	1	Bacillus	haemolytic	enterotoxin	(HBL)
Laminin_I	PF06008.9	gi|299883429|ref|YP_003738982.1|	-	0.0063	15.8	1.7	0.01	15.1	1.2	1.3	1	0	0	1	1	1	1	Laminin	Domain	I
CENP-Q	PF13094.1	gi|299883429|ref|YP_003738982.1|	-	0.0074	16.3	1.4	0.014	15.3	1.0	1.5	1	0	0	1	1	1	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Tektin	PF03148.9	gi|299883429|ref|YP_003738982.1|	-	0.0076	14.8	1.2	0.012	14.2	0.8	1.2	1	0	0	1	1	1	1	Tektin	family
DUF948	PF06103.6	gi|299883429|ref|YP_003738982.1|	-	0.0087	15.8	2.4	0.0087	15.8	1.6	1.8	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
Spc7	PF08317.6	gi|299883429|ref|YP_003738982.1|	-	0.009	14.7	2.9	0.015	13.9	2.0	1.3	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF16	PF01519.11	gi|299883429|ref|YP_003738982.1|	-	0.0092	16.1	3.0	0.022	14.9	2.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
ADIP	PF11559.3	gi|299883429|ref|YP_003738982.1|	-	0.014	15.3	1.4	0.014	15.3	1.0	1.5	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
Lipoprotein_6	PF01441.14	gi|299883429|ref|YP_003738982.1|	-	0.019	14.8	0.0	0.038	13.8	0.0	1.4	1	0	0	1	1	1	0	Lipoprotein
DUF2313	PF10076.4	gi|299883429|ref|YP_003738982.1|	-	0.019	14.3	0.7	14	5.0	0.0	3.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2313)
Streptin-Immun	PF11083.3	gi|299883429|ref|YP_003738982.1|	-	0.026	14.5	0.1	0.053	13.5	0.0	1.5	1	0	0	1	1	1	0	Lantibiotic	streptin	immunity	protein
Laminin_II	PF06009.7	gi|299883429|ref|YP_003738982.1|	-	0.028	14.1	4.8	0.11	12.2	2.7	2.0	2	0	0	2	2	2	0	Laminin	Domain	II
Atg14	PF10186.4	gi|299883429|ref|YP_003738982.1|	-	0.032	13.1	0.4	0.046	12.6	0.3	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Spectrin	PF00435.16	gi|299883429|ref|YP_003738982.1|	-	0.038	14.2	3.0	0.088	13.0	2.1	1.6	1	0	0	1	1	1	0	Spectrin	repeat
Phasin	PF05597.6	gi|299883429|ref|YP_003738982.1|	-	0.047	13.4	1.8	0.18	11.5	1.1	2.0	2	0	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
FlaC_arch	PF05377.6	gi|299883429|ref|YP_003738982.1|	-	0.047	13.5	1.5	1.9	8.4	0.0	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Snapin_Pallidin	PF14712.1	gi|299883429|ref|YP_003738982.1|	-	0.053	13.8	1.9	0.11	12.7	1.3	1.5	1	0	0	1	1	1	0	Snapin/Pallidin
DUF3584	PF12128.3	gi|299883429|ref|YP_003738982.1|	-	0.059	10.6	2.6	0.083	10.2	1.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF2937	PF11157.3	gi|299883429|ref|YP_003738982.1|	-	0.072	12.4	0.7	0.14	11.4	0.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2937)
NPV_P10	PF05531.7	gi|299883429|ref|YP_003738982.1|	-	0.08	13.1	5.3	0.53	10.5	3.7	2.2	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.4	gi|299883429|ref|YP_003738982.1|	-	0.083	13.0	2.3	0.18	11.9	1.6	1.5	1	0	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
SlyX	PF04102.7	gi|299883429|ref|YP_003738982.1|	-	0.085	13.2	7.3	0.42	11.0	3.3	2.8	2	1	1	3	3	3	0	SlyX
DUF4404	PF14357.1	gi|299883429|ref|YP_003738982.1|	-	0.13	12.6	4.0	1.3	9.4	2.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
TBPIP	PF07106.8	gi|299883429|ref|YP_003738982.1|	-	0.14	11.7	3.4	0.085	12.3	0.3	2.0	2	0	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Med9	PF07544.8	gi|299883429|ref|YP_003738982.1|	-	0.14	11.8	3.6	0.36	10.5	2.5	1.7	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
ArdA	PF07275.6	gi|299883429|ref|YP_003738982.1|	-	0.14	12.3	0.9	0.47	10.6	0.5	1.8	2	0	0	2	2	2	0	Antirestriction	protein	(ArdA)
DUF812	PF05667.6	gi|299883429|ref|YP_003738982.1|	-	0.16	10.4	5.0	0.06	11.8	1.8	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
Fzo_mitofusin	PF04799.8	gi|299883429|ref|YP_003738982.1|	-	0.18	11.1	0.7	0.31	10.4	0.5	1.4	1	0	0	1	1	1	0	fzo-like	conserved	region
COG2	PF06148.6	gi|299883429|ref|YP_003738982.1|	-	0.2	11.5	2.8	0.4	10.5	1.1	1.9	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AAA_13	PF13166.1	gi|299883429|ref|YP_003738982.1|	-	0.24	9.8	2.3	0.58	8.5	0.9	1.8	2	0	0	2	2	2	0	AAA	domain
DUF3373	PF11853.3	gi|299883429|ref|YP_003738982.1|	-	0.28	9.6	3.2	0.57	8.6	2.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
Mnd1	PF03962.10	gi|299883429|ref|YP_003738982.1|	-	0.34	10.5	3.6	0.54	9.9	1.1	2.0	2	0	0	2	2	2	0	Mnd1	family
AATF-Che1	PF13339.1	gi|299883429|ref|YP_003738982.1|	-	0.35	11.0	2.6	0.26	11.4	0.3	1.8	2	1	1	3	3	2	0	Apoptosis	antagonizing	transcription	factor
PhoU_div	PF01865.11	gi|299883429|ref|YP_003738982.1|	-	0.41	9.7	3.5	0.76	8.8	2.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF47
DUF2205	PF10224.4	gi|299883429|ref|YP_003738982.1|	-	1.3	8.6	5.4	1.6	8.3	2.2	2.0	1	1	1	2	2	2	0	Predicted	coiled-coil	protein	(DUF2205)
CP12	PF02672.10	gi|299883429|ref|YP_003738982.1|	-	2.8	8.4	8.1	8.1	6.9	2.9	2.9	2	1	1	3	3	3	0	CP12	domain
Synaptobrevin	PF00957.16	gi|299883429|ref|YP_003738982.1|	-	3.1	7.4	5.5	1.2	8.7	2.0	1.7	2	0	0	2	2	1	0	Synaptobrevin
HTH_20	PF12840.2	gi|299883430|ref|YP_003738983.1|	-	0.00036	20.2	0.1	0.00045	19.9	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|299883430|ref|YP_003738983.1|	-	0.0004	20.0	0.0	0.00048	19.7	0.0	1.1	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|299883430|ref|YP_003738983.1|	-	0.0025	17.4	0.3	0.0028	17.2	0.2	1.1	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|299883430|ref|YP_003738983.1|	-	0.0033	17.0	0.0	0.004	16.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|299883430|ref|YP_003738983.1|	-	0.0051	16.4	0.1	0.0056	16.3	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.1	gi|299883430|ref|YP_003738983.1|	-	0.0062	16.5	0.0	0.007	16.3	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_41	PF14502.1	gi|299883430|ref|YP_003738983.1|	-	0.017	14.6	0.0	0.024	14.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_15	PF12324.3	gi|299883430|ref|YP_003738983.1|	-	0.041	13.5	0.1	0.057	13.0	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
DUF4423	PF14394.1	gi|299883430|ref|YP_003738983.1|	-	0.095	12.2	0.0	0.11	12.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Phage_rep_org_N	PF09681.5	gi|299883430|ref|YP_003738983.1|	-	0.11	12.1	0.0	0.12	11.9	0.0	1.1	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
RHH_1	PF01402.16	gi|299883431|ref|YP_003738984.1|	-	2.2e-05	24.1	1.1	5.6e-05	22.8	0.7	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HALZ	PF02183.13	gi|299883431|ref|YP_003738984.1|	-	0.00052	19.6	6.5	0.0011	18.5	4.4	1.8	1	1	0	1	1	1	1	Homeobox	associated	leucine	zipper
AKNA	PF12443.3	gi|299883431|ref|YP_003738984.1|	-	0.0018	18.2	2.2	0.0024	17.8	1.0	1.5	1	1	1	2	2	2	1	AT-hook-containing	transcription	factor
ADIP	PF11559.3	gi|299883431|ref|YP_003738984.1|	-	0.0068	16.3	4.0	0.0075	16.1	2.8	1.2	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
Dynactin	PF12455.3	gi|299883431|ref|YP_003738984.1|	-	0.015	14.2	0.2	0.018	13.9	0.1	1.1	1	0	0	1	1	1	0	Dynein	associated	protein
MSG	PF02349.10	gi|299883431|ref|YP_003738984.1|	-	0.03	14.2	4.7	0.043	13.7	3.2	1.2	1	0	0	1	1	1	0	Major	surface	glycoprotein
DUF4515	PF14988.1	gi|299883431|ref|YP_003738984.1|	-	0.031	13.9	6.7	0.022	14.4	3.8	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4515)
DUF3450	PF11932.3	gi|299883431|ref|YP_003738984.1|	-	0.036	13.3	4.9	0.045	13.0	3.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
V_ATPase_I	PF01496.14	gi|299883431|ref|YP_003738984.1|	-	0.038	11.8	2.1	0.041	11.7	1.5	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
TBPIP	PF07106.8	gi|299883431|ref|YP_003738984.1|	-	0.056	12.9	2.1	0.064	12.7	1.4	1.2	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Mnd1	PF03962.10	gi|299883431|ref|YP_003738984.1|	-	0.072	12.7	5.4	0.097	12.3	3.7	1.2	1	0	0	1	1	1	0	Mnd1	family
DivIVA	PF05103.8	gi|299883431|ref|YP_003738984.1|	-	0.073	13.1	1.5	0.12	12.4	1.0	1.3	1	0	0	1	1	1	0	DivIVA	protein
APG6	PF04111.7	gi|299883431|ref|YP_003738984.1|	-	0.074	12.0	6.0	0.083	11.9	4.2	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Ax_dynein_light	PF10211.4	gi|299883431|ref|YP_003738984.1|	-	0.079	12.7	5.8	0.1	12.4	4.0	1.2	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
IncA	PF04156.9	gi|299883431|ref|YP_003738984.1|	-	0.1	12.1	12.8	0.13	11.8	8.9	1.1	1	0	0	1	1	1	0	IncA	protein
Syntaxin	PF00804.20	gi|299883431|ref|YP_003738984.1|	-	0.11	12.7	1.2	0.18	12.0	0.8	1.3	1	0	0	1	1	1	0	Syntaxin
DUF4407	PF14362.1	gi|299883431|ref|YP_003738984.1|	-	0.13	11.2	3.6	0.21	10.4	2.5	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF2730	PF10805.3	gi|299883431|ref|YP_003738984.1|	-	0.13	12.0	0.6	0.23	11.2	0.4	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Spc24	PF08286.6	gi|299883431|ref|YP_003738984.1|	-	0.14	11.8	3.5	0.16	11.6	2.0	1.4	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
TLE_N	PF03920.10	gi|299883431|ref|YP_003738984.1|	-	0.15	11.9	1.1	0.21	11.4	0.4	1.6	1	1	0	1	1	1	0	Groucho/TLE	N-terminal	Q-rich	domain
TMF_TATA_bd	PF12325.3	gi|299883431|ref|YP_003738984.1|	-	0.26	11.0	7.6	0.38	10.5	5.3	1.3	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
DivIC	PF04977.10	gi|299883431|ref|YP_003738984.1|	-	0.52	9.8	3.4	0.33	10.4	0.4	2.0	1	1	1	2	2	2	0	Septum	formation	initiator
IFT20	PF14931.1	gi|299883431|ref|YP_003738984.1|	-	0.83	9.5	6.8	0.63	9.9	3.5	1.6	1	1	0	1	1	1	0	Intraflagellar	transport	complex	B,	subunit	20
DUF2968	PF11180.3	gi|299883431|ref|YP_003738984.1|	-	0.95	8.8	7.4	1.2	8.5	5.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
NUDE_C	PF04880.8	gi|299883431|ref|YP_003738984.1|	-	1.1	9.5	6.7	1.5	9.1	4.5	1.4	1	1	0	1	1	1	0	NUDE	protein,	C-terminal	conserved	region
DUF904	PF06005.7	gi|299883431|ref|YP_003738984.1|	-	2.8	8.2	9.5	6.5	7.1	5.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF904)
DUF4140	PF13600.1	gi|299883431|ref|YP_003738984.1|	-	4.2	7.8	6.9	20	5.7	4.8	2.0	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)