#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
HTH_24	PF13412.6	gi|300712770|ref|YP_003738582.1|	-	1.4e-05	24.5	0.0	2.3e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DUF1421	PF07223.11	gi|300712770|ref|YP_003738582.1|	-	0.0022	17.8	0.0	0.0037	17.1	0.0	1.4	1	0	0	1	1	1	1	UBA-like	domain	(DUF1421)
PaaX	PF07848.12	gi|300712770|ref|YP_003738582.1|	-	0.015	15.5	0.0	0.023	14.9	0.0	1.3	1	0	0	1	1	1	0	PaaX-like	protein
MarR_2	PF12802.7	gi|300712770|ref|YP_003738582.1|	-	0.019	14.8	0.0	0.032	14.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|300712770|ref|YP_003738582.1|	-	0.038	13.9	0.0	0.059	13.3	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|300712770|ref|YP_003738582.1|	-	0.054	13.4	0.0	0.077	12.9	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF4364	PF14277.6	gi|300712771|ref|YP_003738583.1|	-	0.044	13.5	0.2	0.072	12.8	0.0	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4364)
LisH	PF08513.11	gi|300712771|ref|YP_003738583.1|	-	0.1	12.6	1.2	1.6	8.8	0.5	2.5	2	0	0	2	2	2	0	LisH
DUF2733	PF10813.8	gi|300712771|ref|YP_003738583.1|	-	0.88	9.4	2.6	4.2	7.2	0.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2733)
AAA_31	PF13614.6	gi|300712772|ref|YP_003738584.1|	-	8e-20	71.5	0.0	1.2e-19	71.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|300712772|ref|YP_003738584.1|	-	4.7e-09	36.4	0.0	6.8e-09	35.8	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|300712772|ref|YP_003738584.1|	-	9.7e-07	28.3	0.3	0.0037	16.6	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|300712772|ref|YP_003738584.1|	-	4.6e-06	26.3	0.0	1.8e-05	24.3	0.0	1.8	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|300712772|ref|YP_003738584.1|	-	0.0099	15.3	0.0	0.021	14.3	0.0	1.5	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|300712772|ref|YP_003738584.1|	-	0.014	14.6	0.5	0.023	13.9	0.5	1.7	1	1	0	1	1	1	0	Anion-transporting	ATPase
Octapeptide	PF03373.14	gi|300712772|ref|YP_003738584.1|	-	0.33	11.4	2.4	12	6.8	0.2	3.0	2	0	0	2	2	2	0	Octapeptide	repeat
GRIP	PF01465.20	gi|300712774|ref|YP_003738586.1|	-	0.14	12.1	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	GRIP	domain
PIN	PF01850.21	gi|300712775|ref|YP_003738587.1|	-	1e-11	45.4	0.0	1.2e-11	45.2	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_20	PF12840.7	gi|300712776|ref|YP_003738588.1|	-	9.6e-08	32.0	0.1	1.9e-07	31.0	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|300712776|ref|YP_003738588.1|	-	8.9e-07	28.8	0.0	1.7e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|300712776|ref|YP_003738588.1|	-	2.4e-05	24.1	0.1	3.9e-05	23.4	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|300712776|ref|YP_003738588.1|	-	0.00028	20.4	0.0	0.00052	19.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|300712776|ref|YP_003738588.1|	-	0.00032	20.4	0.4	0.00073	19.3	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|300712776|ref|YP_003738588.1|	-	0.00059	19.6	0.0	0.00087	19.0	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|300712776|ref|YP_003738588.1|	-	0.00068	19.5	0.0	0.00096	19.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.7	gi|300712776|ref|YP_003738588.1|	-	0.00074	19.7	0.1	0.0018	18.4	0.1	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|300712776|ref|YP_003738588.1|	-	0.00076	19.0	0.0	0.0011	18.5	0.0	1.2	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|300712776|ref|YP_003738588.1|	-	0.003	17.5	0.0	0.0047	16.9	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|300712776|ref|YP_003738588.1|	-	0.004	16.9	0.0	0.0067	16.2	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
GntR	PF00392.21	gi|300712776|ref|YP_003738588.1|	-	0.013	15.1	0.3	0.023	14.3	0.0	1.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Sigma70_r4	PF04545.16	gi|300712776|ref|YP_003738588.1|	-	0.027	14.0	0.0	0.059	12.9	0.0	1.6	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_50	PF18024.1	gi|300712776|ref|YP_003738588.1|	-	0.028	14.0	0.0	0.15	11.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|300712776|ref|YP_003738588.1|	-	0.031	14.2	0.1	0.072	13.0	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_30	PF13556.6	gi|300712776|ref|YP_003738588.1|	-	0.062	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_38	PF13936.6	gi|300712776|ref|YP_003738588.1|	-	0.064	13.0	0.0	0.13	12.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_36	PF13730.6	gi|300712776|ref|YP_003738588.1|	-	0.065	13.2	0.0	0.099	12.6	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|300712776|ref|YP_003738588.1|	-	0.083	12.7	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|300712776|ref|YP_003738588.1|	-	0.18	12.2	0.0	0.26	11.6	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Spc7	PF08317.11	gi|300712777|ref|YP_003738589.1|	-	0.003	16.5	2.8	0.0063	15.4	2.8	1.4	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|300712777|ref|YP_003738589.1|	-	0.0035	17.4	1.9	0.0035	17.4	1.9	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1664)
TMF_DNA_bd	PF12329.8	gi|300712777|ref|YP_003738589.1|	-	0.0045	16.9	2.7	0.0045	16.9	2.7	1.8	2	0	0	2	2	1	1	TATA	element	modulatory	factor	1	DNA	binding
DUF16	PF01519.16	gi|300712777|ref|YP_003738589.1|	-	0.0051	17.3	1.5	0.0051	17.3	1.5	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF16
HrpB7	PF09486.10	gi|300712777|ref|YP_003738589.1|	-	0.0053	17.2	1.3	0.012	16.0	1.3	1.6	1	0	0	1	1	1	1	Bacterial	type	III	secretion	protein	(HrpB7)
YlqD	PF11068.8	gi|300712777|ref|YP_003738589.1|	-	0.0059	17.0	1.7	0.011	16.1	1.7	1.4	1	0	0	1	1	1	1	YlqD	protein
UPF0242	PF06785.11	gi|300712777|ref|YP_003738589.1|	-	0.0093	16.1	0.7	0.015	15.4	0.7	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
Lebercilin	PF15619.6	gi|300712777|ref|YP_003738589.1|	-	0.012	15.3	1.8	0.055	13.1	1.3	2.1	2	0	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF4404	PF14357.6	gi|300712777|ref|YP_003738589.1|	-	0.015	15.9	2.6	0.42	11.3	2.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4404)
SlyX	PF04102.12	gi|300712777|ref|YP_003738589.1|	-	0.019	15.5	8.2	0.042	14.5	4.9	2.8	2	1	1	3	3	3	0	SlyX
Bacillus_HBL	PF05791.11	gi|300712777|ref|YP_003738589.1|	-	0.02	14.7	1.4	0.38	10.5	0.1	2.6	2	1	1	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF948	PF06103.11	gi|300712777|ref|YP_003738589.1|	-	0.025	14.8	2.5	0.025	14.8	2.5	2.0	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
FlaC_arch	PF05377.11	gi|300712777|ref|YP_003738589.1|	-	0.04	14.3	2.1	3	8.3	0.1	2.6	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
BST2	PF16716.5	gi|300712777|ref|YP_003738589.1|	-	0.047	14.3	3.4	0.047	14.3	3.4	2.2	3	0	0	3	3	1	0	Bone	marrow	stromal	antigen	2
Atg14	PF10186.9	gi|300712777|ref|YP_003738589.1|	-	0.049	12.7	0.2	0.053	12.6	0.2	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
CENP-Q	PF13094.6	gi|300712777|ref|YP_003738589.1|	-	0.075	13.2	1.7	0.11	12.7	1.7	1.3	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF2937	PF11157.8	gi|300712777|ref|YP_003738589.1|	-	0.077	12.7	0.3	0.12	12.0	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2937)
SKA1	PF07160.12	gi|300712777|ref|YP_003738589.1|	-	0.087	12.7	4.3	0.074	12.9	2.7	1.7	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
ADH_N_2	PF16884.5	gi|300712777|ref|YP_003738589.1|	-	0.1	12.5	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	N-terminal	domain	of	oxidoreductase
MatP_C	PF17414.2	gi|300712777|ref|YP_003738589.1|	-	0.11	12.7	1.0	3.7	7.8	0.0	2.4	2	0	0	2	2	2	0	MatP	C-terminal	ribbon-helix-helix	domain
BLOC1_2	PF10046.9	gi|300712777|ref|YP_003738589.1|	-	0.12	12.6	3.2	0.53	10.6	3.1	2.1	2	1	0	2	2	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
COG2	PF06148.11	gi|300712777|ref|YP_003738589.1|	-	0.13	12.4	3.4	0.17	11.9	1.6	1.9	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Apolipoprotein	PF01442.18	gi|300712777|ref|YP_003738589.1|	-	0.13	12.1	6.2	0.32	10.9	6.2	1.7	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Fzo_mitofusin	PF04799.13	gi|300712777|ref|YP_003738589.1|	-	0.13	11.8	1.1	0.23	11.0	1.1	1.4	1	0	0	1	1	1	0	fzo-like	conserved	region
ADIP	PF11559.8	gi|300712777|ref|YP_003738589.1|	-	0.18	11.9	5.1	0.065	13.3	2.5	1.6	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
Laminin_II	PF06009.12	gi|300712777|ref|YP_003738589.1|	-	0.19	11.8	5.1	0.18	11.8	2.4	1.9	2	0	0	2	2	2	0	Laminin	Domain	II
HSBP1	PF06825.12	gi|300712777|ref|YP_003738589.1|	-	0.23	11.3	2.3	2.7	7.9	0.0	2.6	2	1	0	2	2	2	0	Heat	shock	factor	binding	protein	1
NPV_P10	PF05531.12	gi|300712777|ref|YP_003738589.1|	-	0.29	11.6	5.3	0.91	10.0	4.0	2.4	2	1	0	2	2	1	0	Nucleopolyhedrovirus	P10	protein
DUF3349	PF11829.8	gi|300712777|ref|YP_003738589.1|	-	0.33	11.7	2.6	0.44	11.4	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3349)
DUF2205	PF10224.9	gi|300712777|ref|YP_003738589.1|	-	0.38	10.8	4.3	0.51	10.4	3.2	1.8	1	1	1	2	2	2	0	Short	coiled-coil	protein
DivIC	PF04977.15	gi|300712777|ref|YP_003738589.1|	-	0.63	9.9	6.5	2.2	8.1	5.8	2.1	1	1	1	2	2	2	0	Septum	formation	initiator
CP12	PF02672.15	gi|300712777|ref|YP_003738589.1|	-	0.72	10.6	6.4	10	7.0	3.2	3.5	3	1	1	4	4	4	0	CP12	domain
HemX	PF04375.14	gi|300712777|ref|YP_003738589.1|	-	0.79	8.9	5.1	2.8	7.1	5.2	1.8	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
PhoU	PF01895.19	gi|300712777|ref|YP_003738589.1|	-	0.82	10.2	3.7	1	9.8	2.2	2.0	2	1	0	2	2	1	0	PhoU	domain
Phage_GPO	PF05929.11	gi|300712777|ref|YP_003738589.1|	-	1.1	8.9	7.0	0.43	10.2	2.7	1.9	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
ATG16	PF08614.11	gi|300712777|ref|YP_003738589.1|	-	1.7	8.9	10.4	0.47	10.6	6.1	2.1	2	1	1	3	3	3	0	Autophagy	protein	16	(ATG16)
TBPIP_N	PF15517.6	gi|300712778|ref|YP_003738590.1|	-	0.063	13.3	0.0	0.063	13.3	0.0	1.2	1	0	0	1	1	1	0	TBP-interacting	protein	N-terminus
TaqI_C	PF12950.7	gi|300712779|ref|YP_003738591.1|	-	5.2e-15	55.6	0.0	1.4e-14	54.2	0.0	1.8	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.11	gi|300712779|ref|YP_003738591.1|	-	7e-09	36.1	0.0	2.6e-08	34.3	0.0	2.0	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
N6_Mtase	PF02384.16	gi|300712779|ref|YP_003738591.1|	-	4.1e-08	32.9	0.0	1.6e-05	24.3	0.1	3.4	2	1	0	2	2	2	1	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|300712779|ref|YP_003738591.1|	-	0.0016	18.1	0.0	0.16	11.6	0.0	2.5	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
HSDR_N	PF04313.14	gi|300712779|ref|YP_003738591.1|	-	0.0047	16.9	0.0	0.17	11.8	0.0	2.8	1	1	1	2	2	2	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
HSDR_N_2	PF13588.6	gi|300712779|ref|YP_003738591.1|	-	0.021	14.8	0.0	0.18	11.8	0.0	2.4	1	1	0	1	1	1	0	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
Helicase_C	PF00271.31	gi|300712780|ref|YP_003738592.1|	-	1.4e-22	80.1	0.0	9.4e-22	77.5	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|300712780|ref|YP_003738592.1|	-	7.3e-19	67.7	0.0	5.1e-17	61.6	0.0	2.2	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|300712780|ref|YP_003738592.1|	-	3.1e-12	46.8	0.6	6.3e-12	45.8	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
RapA_C	PF12137.8	gi|300712780|ref|YP_003738592.1|	-	1.2e-06	27.8	0.0	1.2e-06	27.8	0.0	3.0	3	0	0	3	3	3	1	RNA	polymerase	recycling	family	C-terminal
DEAD	PF00270.29	gi|300712780|ref|YP_003738592.1|	-	8.1e-06	25.7	0.0	2.1e-05	24.3	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_34	PF13872.6	gi|300712780|ref|YP_003738592.1|	-	0.00081	18.4	0.1	0.0022	16.9	0.1	1.7	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
VAPB_antitox	PF02697.14	gi|300712783|ref|YP_003738595.1|	-	1.2e-05	26.0	2.1	1.3e-05	25.9	2.1	1.0	1	0	0	1	1	1	1	Putative	antitoxin
DUF3862	PF12978.7	gi|300712783|ref|YP_003738595.1|	-	0.11	12.3	0.0	0.11	12.3	0.0	1.0	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3862)
DUF910	PF06014.11	gi|300712784|ref|YP_003738596.1|	-	0.023	14.7	0.7	0.043	13.8	0.1	1.8	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF910)
SHOCT	PF09851.9	gi|300712784|ref|YP_003738596.1|	-	0.031	14.0	0.6	0.031	14.0	0.6	3.9	5	0	0	5	5	5	0	Short	C-terminal	domain
Vps5	PF09325.10	gi|300712788|ref|YP_003738600.1|	-	0.00019	21.1	2.4	0.37	10.3	3.9	2.1	1	1	1	2	2	2	2	Vps5	C	terminal	like
Tektin	PF03148.14	gi|300712788|ref|YP_003738600.1|	-	0.00031	19.6	4.0	0.00046	19.1	4.0	1.2	1	0	0	1	1	1	1	Tektin	family
APG6_N	PF17675.1	gi|300712788|ref|YP_003738600.1|	-	0.00039	20.9	8.5	0.0007	20.1	8.5	1.4	1	0	0	1	1	1	1	Apg6	coiled-coil	region
Phage_GP20	PF06810.11	gi|300712788|ref|YP_003738600.1|	-	0.00064	19.5	2.7	0.0015	18.4	2.8	1.5	2	0	0	2	2	1	1	Phage	minor	structural	protein	GP20
Laminin_II	PF06009.12	gi|300712788|ref|YP_003738600.1|	-	0.0014	18.7	1.5	0.0027	17.8	1.5	1.4	1	0	0	1	1	1	1	Laminin	Domain	II
DUF3450	PF11932.8	gi|300712788|ref|YP_003738600.1|	-	0.0017	17.7	3.8	0.0026	17.1	3.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
FmiP_Thoc5	PF09766.9	gi|300712788|ref|YP_003738600.1|	-	0.0036	16.6	2.4	0.0043	16.4	2.4	1.2	1	0	0	1	1	1	1	Fms-interacting	protein/Thoc5
Spc7	PF08317.11	gi|300712788|ref|YP_003738600.1|	-	0.0037	16.2	3.5	0.0045	15.9	3.5	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Rab5-bind	PF09311.11	gi|300712788|ref|YP_003738600.1|	-	0.0063	15.9	3.7	0.0063	15.9	3.7	1.4	2	0	0	2	2	1	1	Rabaptin-like	protein
Jnk-SapK_ap_N	PF09744.9	gi|300712788|ref|YP_003738600.1|	-	0.0074	16.5	5.2	0.014	15.6	5.2	1.6	1	0	0	1	1	1	1	JNK_SAPK-associated	protein-1
ADIP	PF11559.8	gi|300712788|ref|YP_003738600.1|	-	0.0075	16.4	5.9	0.012	15.7	5.9	1.3	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
Syntaxin-6_N	PF09177.11	gi|300712788|ref|YP_003738600.1|	-	0.0088	16.6	1.0	0.015	15.8	1.0	1.5	1	0	0	1	1	1	1	Syntaxin	6,	N-terminal
Tropomyosin_1	PF12718.7	gi|300712788|ref|YP_003738600.1|	-	0.0092	16.1	12.0	0.031	14.4	12.2	1.8	2	0	0	2	2	1	1	Tropomyosin	like
Lectin_N	PF03954.14	gi|300712788|ref|YP_003738600.1|	-	0.0096	15.7	0.5	0.016	15.0	0.5	1.3	1	0	0	1	1	1	1	Hepatic	lectin,	N-terminal	domain
FapA	PF03961.13	gi|300712788|ref|YP_003738600.1|	-	0.014	14.0	0.9	0.018	13.7	0.9	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
DHR10	PF18595.1	gi|300712788|ref|YP_003738600.1|	-	0.014	15.4	11.5	0.027	14.5	11.5	1.4	1	0	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
DUF737	PF05300.11	gi|300712788|ref|YP_003738600.1|	-	0.016	15.6	8.8	0.026	14.9	8.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF737)
HAUS-augmin3	PF14932.6	gi|300712788|ref|YP_003738600.1|	-	0.019	14.5	4.0	0.025	14.2	4.0	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Mce4_CUP1	PF11887.8	gi|300712788|ref|YP_003738600.1|	-	0.022	14.2	0.1	0.034	13.6	0.1	1.2	1	0	0	1	1	1	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Fmp27_WPPW	PF10359.9	gi|300712788|ref|YP_003738600.1|	-	0.023	13.6	1.2	0.028	13.3	1.2	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF1664	PF07889.12	gi|300712788|ref|YP_003738600.1|	-	0.024	14.7	2.4	0.035	14.1	2.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
GAS	PF13851.6	gi|300712788|ref|YP_003738600.1|	-	0.025	13.9	6.1	0.034	13.5	6.1	1.2	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Prefoldin_2	PF01920.20	gi|300712788|ref|YP_003738600.1|	-	0.04	13.9	9.5	0.28	11.1	3.0	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
ZapB	PF06005.12	gi|300712788|ref|YP_003738600.1|	-	0.045	14.2	10.5	0.09	13.2	10.5	1.4	1	0	0	1	1	1	0	Cell	division	protein	ZapB
UPF0242	PF06785.11	gi|300712788|ref|YP_003738600.1|	-	0.07	13.2	3.8	0.098	12.8	3.8	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
AAA_13	PF13166.6	gi|300712788|ref|YP_003738600.1|	-	0.07	11.8	1.7	0.087	11.5	1.7	1.1	1	0	0	1	1	1	0	AAA	domain
TMPIT	PF07851.13	gi|300712788|ref|YP_003738600.1|	-	0.083	12.1	0.0	0.1	11.9	0.0	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
CENP-F_leu_zip	PF10473.9	gi|300712788|ref|YP_003738600.1|	-	0.099	12.7	11.4	0.19	11.7	11.3	1.6	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
AAA_23	PF13476.6	gi|300712788|ref|YP_003738600.1|	-	0.11	13.0	3.8	0.16	12.5	3.8	1.4	1	0	0	1	1	1	0	AAA	domain
Macoilin	PF09726.9	gi|300712788|ref|YP_003738600.1|	-	0.13	10.8	2.0	0.15	10.5	2.0	1.1	1	0	0	1	1	1	0	Macoilin	family
CENP-H	PF05837.12	gi|300712788|ref|YP_003738600.1|	-	0.14	12.6	5.1	0.23	11.9	5.1	1.3	1	0	0	1	1	1	0	Centromere	protein	H	(CENP-H)
Lipoprotein_20	PF13942.6	gi|300712788|ref|YP_003738600.1|	-	0.14	12.1	4.7	0.24	11.3	4.7	1.4	1	0	0	1	1	1	0	YfhG	lipoprotein
DUF916	PF06030.12	gi|300712788|ref|YP_003738600.1|	-	0.14	12.2	0.3	9.8	6.3	0.1	2.3	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF916)
FemAB	PF02388.16	gi|300712788|ref|YP_003738600.1|	-	0.14	11.0	3.0	0.19	10.5	3.0	1.1	1	0	0	1	1	1	0	FemAB	family
TraF_2	PF13729.6	gi|300712788|ref|YP_003738600.1|	-	0.16	11.3	0.1	0.18	11.1	0.1	1.1	1	0	0	1	1	1	0	F	plasmid	transfer	operon,	TraF,	protein
Seryl_tRNA_N	PF02403.22	gi|300712788|ref|YP_003738600.1|	-	0.17	12.2	6.9	0.43	10.8	6.9	1.7	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF3552	PF12072.8	gi|300712788|ref|YP_003738600.1|	-	0.17	11.3	9.5	0.25	10.7	9.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
NPV_P10	PF05531.12	gi|300712788|ref|YP_003738600.1|	-	0.19	12.2	1.4	0.54	10.8	1.4	1.9	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
CENP-Q	PF13094.6	gi|300712788|ref|YP_003738600.1|	-	0.21	11.8	8.9	0.23	11.6	8.0	1.5	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF724	PF05266.14	gi|300712788|ref|YP_003738600.1|	-	0.23	11.2	3.4	0.36	10.6	3.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF2968	PF11180.8	gi|300712788|ref|YP_003738600.1|	-	0.25	11.0	5.8	0.27	10.8	4.7	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2968)
DUF4407	PF14362.6	gi|300712788|ref|YP_003738600.1|	-	0.25	10.7	1.7	0.3	10.4	1.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF4337	PF14235.6	gi|300712788|ref|YP_003738600.1|	-	0.27	11.3	3.0	0.4	10.8	3.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
XhlA	PF10779.9	gi|300712788|ref|YP_003738600.1|	-	0.28	11.4	9.8	0.33	11.2	3.3	2.4	1	1	1	2	2	2	0	Haemolysin	XhlA
KfrA_N	PF11740.8	gi|300712788|ref|YP_003738600.1|	-	0.29	11.8	7.6	1.1	9.9	7.6	2.0	1	1	0	1	1	1	0	Plasmid	replication	region	DNA-binding	N-term
ATG16	PF08614.11	gi|300712788|ref|YP_003738600.1|	-	0.3	11.3	11.8	0.45	10.7	11.5	1.4	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
PHTB1_C	PF14728.6	gi|300712788|ref|YP_003738600.1|	-	0.31	10.1	1.1	0.41	9.7	1.1	1.1	1	0	0	1	1	1	0	PTHB1	C-terminus
TPR_MLP1_2	PF07926.12	gi|300712788|ref|YP_003738600.1|	-	0.32	11.1	9.9	0.87	9.7	9.9	1.7	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
TMF_DNA_bd	PF12329.8	gi|300712788|ref|YP_003738600.1|	-	0.42	10.6	9.9	0.84	9.7	9.9	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF773	PF05600.12	gi|300712788|ref|YP_003738600.1|	-	0.59	8.8	5.9	1.4	7.6	5.9	1.5	1	1	0	1	1	1	0	CDK5	regulatory	subunit-associated	protein	3
Atg14	PF10186.9	gi|300712788|ref|YP_003738600.1|	-	1.2	8.2	3.8	1.5	7.8	3.8	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
EMP24_GP25L	PF01105.24	gi|300712788|ref|YP_003738600.1|	-	1.4	8.8	6.1	2.2	8.2	6.1	1.4	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Spc24	PF08286.11	gi|300712788|ref|YP_003738600.1|	-	1.5	9.1	8.6	18	5.6	8.6	2.2	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
FlaC_arch	PF05377.11	gi|300712788|ref|YP_003738600.1|	-	1.9	9.0	4.9	3.9	8.0	1.8	2.4	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4140	PF13600.6	gi|300712788|ref|YP_003738600.1|	-	2.7	8.5	10.9	7.9	7.0	5.1	2.5	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DivIC	PF04977.15	gi|300712788|ref|YP_003738600.1|	-	4.4	7.1	12.3	3.8	7.3	6.0	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
TAT_signal	PF10518.9	gi|300712790|ref|YP_003738602.1|	-	9.3e-05	22.1	3.4	0.0002	21.0	3.4	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Beta_helix	PF13229.6	gi|300712790|ref|YP_003738602.1|	-	0.0091	15.9	2.0	0.0091	15.9	2.0	2.4	2	1	0	2	2	2	1	Right	handed	beta	helix	region
DUF2530	PF10745.9	gi|300712791|ref|YP_003738603.1|	-	0.092	13.0	3.1	0.22	11.8	3.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2530)
ATPase_2	PF01637.18	gi|300712794|ref|YP_003738606.1|	-	0.069	13.1	0.2	0.13	12.1	0.2	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Endonuc-BglII	PF09195.11	gi|300712795|ref|YP_003738607.1|	-	0.033	14.0	0.0	0.044	13.6	0.0	1.2	1	0	0	1	1	1	0	Restriction	endonuclease	BglII
RHH_5	PF07878.11	gi|300712796|ref|YP_003738608.1|	-	0.0044	16.9	0.1	0.0089	15.9	0.1	1.5	1	0	0	1	1	1	1	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
RHH_7	PF16777.5	gi|300712796|ref|YP_003738608.1|	-	0.019	15.3	0.0	0.036	14.5	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator,	RHH-like,	CopG
DUF489	PF04356.12	gi|300712796|ref|YP_003738608.1|	-	0.066	13.2	1.0	0.086	12.8	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF489)
Vpu	PF00558.19	gi|300712796|ref|YP_003738608.1|	-	2.7	7.8	6.9	1.4	8.8	0.5	2.4	2	0	0	2	2	2	0	Vpu	protein
Glycos_trans_3N	PF02885.17	gi|300712797|ref|YP_003738609.1|	-	0.083	12.7	0.1	0.25	11.2	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	transferase	family,	helical	bundle	domain
TrwB_AAD_bind	PF10412.9	gi|300712798|ref|YP_003738610.1|	-	1e-39	136.6	0.0	1.6e-39	135.9	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|300712798|ref|YP_003738610.1|	-	1.2e-13	51.1	0.0	2.2e-13	50.3	0.0	1.4	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|300712798|ref|YP_003738610.1|	-	7e-13	48.2	0.0	1.1e-12	47.6	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
AAA_22	PF13401.6	gi|300712798|ref|YP_003738610.1|	-	1.4e-06	28.7	0.0	0.00041	20.6	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
DUF87	PF01935.17	gi|300712798|ref|YP_003738610.1|	-	1.2e-05	25.5	0.0	2.4e-05	24.5	0.0	1.6	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_16	PF13191.6	gi|300712798|ref|YP_003738610.1|	-	0.036	14.4	0.1	0.16	12.3	0.1	2.3	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF2026	PF09641.10	gi|300712798|ref|YP_003738610.1|	-	0.059	13.0	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2026)
Zeta_toxin	PF06414.12	gi|300712798|ref|YP_003738610.1|	-	0.079	12.2	0.0	0.23	10.7	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
AAA_5	PF07728.14	gi|300712798|ref|YP_003738610.1|	-	0.097	12.7	0.0	4	7.4	0.0	2.5	2	1	1	3	3	3	0	AAA	domain	(dynein-related	subfamily)
ABC_tran	PF00005.27	gi|300712798|ref|YP_003738610.1|	-	0.11	13.0	0.0	0.95	10.0	0.0	2.2	2	0	0	2	2	2	0	ABC	transporter
Roc	PF08477.13	gi|300712798|ref|YP_003738610.1|	-	0.16	12.2	0.0	1.3	9.2	0.0	2.5	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_7	PF12775.7	gi|300712798|ref|YP_003738610.1|	-	0.18	11.3	0.0	0.43	10.1	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
RHH_1	PF01402.21	gi|300712800|ref|YP_003738612.1|	-	1.1e-07	31.6	1.4	3.2e-07	30.0	1.4	1.9	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
CopG_antitoxin	PF12441.8	gi|300712800|ref|YP_003738612.1|	-	0.013	16.0	0.1	0.039	14.5	0.0	1.8	2	0	0	2	2	2	0	CopG	antitoxin	of	type	II	toxin-antitoxin	system
RHH_4	PF13467.6	gi|300712800|ref|YP_003738612.1|	-	0.014	15.3	0.3	0.027	14.3	0.3	1.5	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
CALCOCO1	PF07888.11	gi|300712800|ref|YP_003738612.1|	-	0.027	13.3	15.8	0.031	13.1	15.8	1.1	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
V_ATPase_I	PF01496.19	gi|300712800|ref|YP_003738612.1|	-	0.048	11.6	5.7	0.051	11.5	5.7	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
CSN5_C	PF18323.1	gi|300712800|ref|YP_003738612.1|	-	0.049	14.5	0.5	0.085	13.8	0.5	1.4	1	0	0	1	1	1	0	Cop9	signalosome	subunit	5	C-terminal	domain
Bul1_C	PF04426.12	gi|300712800|ref|YP_003738612.1|	-	0.057	12.8	2.9	0.057	12.8	2.0	1.4	1	1	0	1	1	1	0	Bul1	C	terminus
DUF4407	PF14362.6	gi|300712800|ref|YP_003738612.1|	-	0.061	12.7	5.5	0.08	12.3	5.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Laminin_II	PF06009.12	gi|300712800|ref|YP_003738612.1|	-	0.064	13.3	1.4	0.078	13.0	1.4	1.3	1	0	0	1	1	1	0	Laminin	Domain	II
DUF1796	PF08795.10	gi|300712800|ref|YP_003738612.1|	-	0.088	12.8	2.6	0.11	12.5	2.6	1.2	1	0	0	1	1	1	0	Putative	papain-like	cysteine	peptidase	(DUF1796)
HAUS6_N	PF14661.6	gi|300712800|ref|YP_003738612.1|	-	0.12	11.9	6.7	0.16	11.5	6.7	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Exonuc_VII_L	PF02601.15	gi|300712800|ref|YP_003738612.1|	-	0.18	11.3	7.8	0.22	11.1	7.8	1.0	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Paralemmin	PF03285.15	gi|300712800|ref|YP_003738612.1|	-	0.18	11.3	11.8	0.078	12.5	9.6	1.5	2	0	0	2	2	2	0	Paralemmin
DUF3987	PF13148.6	gi|300712800|ref|YP_003738612.1|	-	0.41	9.6	7.3	0.3	10.0	5.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3987)
DUF724	PF05266.14	gi|300712800|ref|YP_003738612.1|	-	0.53	10.1	7.3	0.7	9.7	7.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Fungal_trans_2	PF11951.8	gi|300712800|ref|YP_003738612.1|	-	0.81	8.4	3.4	0.89	8.3	3.4	1.2	1	0	0	1	1	1	0	Fungal	specific	transcription	factor	domain
FapA	PF03961.13	gi|300712800|ref|YP_003738612.1|	-	1.9	7.0	6.3	2.3	6.7	6.3	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
LUC7	PF03194.15	gi|300712800|ref|YP_003738612.1|	-	3.4	7.3	12.3	4.5	6.9	12.3	1.1	1	0	0	1	1	1	0	LUC7	N_terminus
HMMR_N	PF15905.5	gi|300712800|ref|YP_003738612.1|	-	3.5	7.0	18.7	5.9	6.3	18.1	1.5	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
YabA	PF06156.13	gi|300712800|ref|YP_003738612.1|	-	4.3	8.0	9.5	7.5	7.3	9.1	1.7	1	1	0	1	1	1	0	Initiation	control	protein	YabA
UPF0242	PF06785.11	gi|300712800|ref|YP_003738612.1|	-	5.4	7.1	19.6	0.42	10.7	7.3	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
AAA_11	PF13086.6	gi|300712800|ref|YP_003738612.1|	-	6.2	6.5	7.1	7	6.4	7.1	1.1	1	0	0	1	1	1	0	AAA	domain
DDE_Tnp_1	PF01609.21	gi|300712801|ref|YP_003738613.1|	-	1.1e-09	38.3	0.0	3.5e-09	36.6	0.0	1.8	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|300712801|ref|YP_003738613.1|	-	0.00099	19.1	0.2	0.046	13.7	0.0	2.5	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
GATase_2	PF00310.21	gi|300712801|ref|YP_003738613.1|	-	0.052	12.3	0.3	0.08	11.6	0.3	1.2	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
TrkH	PF02386.16	gi|300712803|ref|YP_003738615.1|	-	4e-66	223.5	14.2	1.6e-65	221.5	14.2	1.7	1	1	0	1	1	1	1	Cation	transport	protein
Neurensin	PF14927.6	gi|300712803|ref|YP_003738615.1|	-	0.06	13.1	0.1	4.5	7.0	0.0	3.2	3	0	0	3	3	3	0	Neurensin
Usp	PF00582.26	gi|300712804|ref|YP_003738616.1|	-	4.4e-06	27.3	12.6	0.00031	21.3	3.3	3.2	2	2	0	2	2	2	2	Universal	stress	protein	family
ApoLp-III	PF07464.11	gi|300712804|ref|YP_003738616.1|	-	1.3	9.1	5.9	2.6	8.1	0.2	2.6	2	1	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
TrkA_N	PF02254.18	gi|300712805|ref|YP_003738617.1|	-	3.6e-26	91.7	3.5	4.3e-26	91.4	2.4	1.7	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|300712805|ref|YP_003738617.1|	-	1.6e-12	47.1	2.3	2.7e-12	46.3	0.4	2.2	2	0	0	2	2	2	1	TrkA-C	domain
Sacchrp_dh_NADP	PF03435.18	gi|300712805|ref|YP_003738617.1|	-	7.6e-07	29.5	0.7	1.2e-06	28.8	0.7	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|300712805|ref|YP_003738617.1|	-	1.5e-06	28.3	0.2	2.6e-06	27.5	0.2	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
Shikimate_DH	PF01488.20	gi|300712805|ref|YP_003738617.1|	-	4.1e-06	26.9	0.2	5.7e-06	26.4	0.2	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|300712805|ref|YP_003738617.1|	-	2.4e-05	24.8	0.2	6.4e-05	23.5	0.2	1.8	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NmrA	PF05368.13	gi|300712805|ref|YP_003738617.1|	-	0.00013	21.6	0.4	0.00033	20.3	0.4	1.6	1	1	0	1	1	1	1	NmrA-like	family
DapB_N	PF01113.20	gi|300712805|ref|YP_003738617.1|	-	0.0011	19.1	1.1	0.0019	18.3	1.1	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
3HCDH_N	PF02737.18	gi|300712805|ref|YP_003738617.1|	-	0.0021	18.0	0.3	0.0035	17.3	0.3	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|300712805|ref|YP_003738617.1|	-	0.003	16.9	1.4	0.0044	16.3	1.4	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
PglD_N	PF17836.1	gi|300712805|ref|YP_003738617.1|	-	0.0035	17.9	0.6	0.025	15.2	0.2	2.2	2	0	0	2	2	2	1	PglD	N-terminal	domain
NAD_binding_7	PF13241.6	gi|300712805|ref|YP_003738617.1|	-	0.0042	17.5	0.5	0.0067	16.8	0.2	1.5	2	0	0	2	2	1	1	Putative	NAD(P)-binding
XdhC_C	PF13478.6	gi|300712805|ref|YP_003738617.1|	-	0.014	15.9	0.2	0.019	15.4	0.2	1.4	1	1	0	1	1	1	0	XdhC	Rossmann	domain
Gp_dh_N	PF00044.24	gi|300712805|ref|YP_003738617.1|	-	0.018	15.4	0.4	0.044	14.1	0.4	1.9	1	1	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|300712805|ref|YP_003738617.1|	-	0.028	13.7	0.2	0.039	13.2	0.2	1.3	1	0	0	1	1	1	0	Thi4	family
HDPD	PF02924.14	gi|300712805|ref|YP_003738617.1|	-	0.034	14.3	0.0	0.74	9.9	0.0	2.0	1	1	0	2	2	2	0	Bacteriophage	lambda	head	decoration	protein	D
GFO_IDH_MocA	PF01408.22	gi|300712805|ref|YP_003738617.1|	-	0.049	14.5	0.2	0.16	12.8	0.2	1.9	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Pyr_redox_2	PF07992.14	gi|300712805|ref|YP_003738617.1|	-	0.055	12.7	0.3	0.091	12.0	0.3	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|300712805|ref|YP_003738617.1|	-	0.096	12.0	0.1	0.14	11.5	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|300712805|ref|YP_003738617.1|	-	0.1	12.8	0.0	0.35	11.1	0.0	1.9	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|300712805|ref|YP_003738617.1|	-	0.14	11.7	0.1	0.19	11.3	0.1	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
TrkH	PF02386.16	gi|300712806|ref|YP_003738618.1|	-	3.3e-70	237.0	13.5	4.7e-70	236.5	13.5	1.1	1	0	0	1	1	1	1	Cation	transport	protein
PHBC_N	PF12551.8	gi|300712806|ref|YP_003738618.1|	-	0.065	13.0	0.3	7.3	6.4	0.0	3.1	2	0	0	2	2	2	0	Poly-beta-hydroxybutyrate	polymerase	N	terminal
OppC_N	PF12911.7	gi|300712806|ref|YP_003738618.1|	-	0.47	10.5	0.0	0.47	10.5	0.0	3.6	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
TrkA_N	PF02254.18	gi|300712807|ref|YP_003738619.1|	-	5.1e-26	91.2	2.2	1.1e-25	90.2	2.2	1.5	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|300712807|ref|YP_003738619.1|	-	2.3e-14	53.0	0.9	1.1e-12	47.6	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|300712807|ref|YP_003738619.1|	-	1e-06	29.3	0.5	3.7e-06	27.4	0.4	2.0	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|300712807|ref|YP_003738619.1|	-	5.7e-05	23.4	0.5	0.00012	22.3	0.5	1.6	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ATPgrasp_N	PF18130.1	gi|300712807|ref|YP_003738619.1|	-	0.00017	22.1	0.7	0.00036	21.0	0.7	1.6	1	0	0	1	1	1	1	ATP-grasp	N-terminal	domain
NAD_binding_7	PF13241.6	gi|300712807|ref|YP_003738619.1|	-	0.00022	21.6	0.2	0.00041	20.8	0.2	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|300712807|ref|YP_003738619.1|	-	0.00029	20.9	0.1	0.00061	19.9	0.1	1.6	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|300712807|ref|YP_003738619.1|	-	0.00093	18.8	1.0	0.022	14.4	0.2	2.4	1	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|300712807|ref|YP_003738619.1|	-	0.0011	19.5	0.2	0.0084	16.7	0.1	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
XdhC_C	PF13478.6	gi|300712807|ref|YP_003738619.1|	-	0.0029	18.1	0.1	0.0048	17.4	0.1	1.4	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Peripla_BP_3	PF13377.6	gi|300712807|ref|YP_003738619.1|	-	0.0051	17.2	0.2	0.0077	16.6	0.2	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein-like	domain
NAD_binding_2	PF03446.15	gi|300712807|ref|YP_003738619.1|	-	0.006	16.8	0.0	0.0088	16.2	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_10	PF13460.6	gi|300712807|ref|YP_003738619.1|	-	0.0067	16.3	1.5	0.019	14.9	1.0	1.8	1	1	1	2	2	2	1	NAD(P)H-binding
GFO_IDH_MocA	PF01408.22	gi|300712807|ref|YP_003738619.1|	-	0.0067	17.2	0.3	0.024	15.5	0.3	1.9	1	1	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Pyr_redox_2	PF07992.14	gi|300712807|ref|YP_003738619.1|	-	0.0071	15.6	0.1	0.21	10.8	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ADH_zinc_N	PF00107.26	gi|300712807|ref|YP_003738619.1|	-	0.0073	16.3	0.1	0.02	14.9	0.1	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
PEP-utilizers	PF00391.23	gi|300712807|ref|YP_003738619.1|	-	0.0082	15.8	0.0	0.022	14.5	0.0	1.8	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
3HCDH_N	PF02737.18	gi|300712807|ref|YP_003738619.1|	-	0.015	15.1	0.1	0.024	14.5	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|300712807|ref|YP_003738619.1|	-	0.018	14.3	0.8	0.031	13.6	0.8	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
PglD_N	PF17836.1	gi|300712807|ref|YP_003738619.1|	-	0.027	15.1	0.5	0.093	13.4	0.2	2.0	2	1	0	2	2	2	0	PglD	N-terminal	domain
2-Hacid_dh_C	PF02826.19	gi|300712807|ref|YP_003738619.1|	-	0.03	13.7	0.0	0.047	13.0	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|300712807|ref|YP_003738619.1|	-	0.041	13.5	0.1	0.067	12.8	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NmrA	PF05368.13	gi|300712807|ref|YP_003738619.1|	-	0.072	12.6	0.2	0.1	12.1	0.2	1.3	1	0	0	1	1	1	0	NmrA-like	family
ThiF	PF00899.21	gi|300712807|ref|YP_003738619.1|	-	0.15	11.4	1.5	4.2	6.6	0.1	2.1	1	1	1	2	2	2	0	ThiF	family
Usp	PF00582.26	gi|300712808|ref|YP_003738620.1|	-	2.7e-12	47.4	0.2	3.2e-12	47.2	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
TrkA_C	PF02080.21	gi|300712810|ref|YP_003738622.1|	-	2.3e-10	40.1	0.1	5.3e-10	39.0	0.1	1.7	1	0	0	1	1	1	1	TrkA-C	domain
HTH_24	PF13412.6	gi|300712810|ref|YP_003738622.1|	-	1.8e-09	37.0	0.9	3.6e-09	36.1	0.9	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|300712810|ref|YP_003738622.1|	-	1.1e-07	31.5	0.5	2e-07	30.7	0.5	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|300712810|ref|YP_003738622.1|	-	7.2e-06	25.8	0.1	1.5e-05	24.8	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_5	PF01022.20	gi|300712810|ref|YP_003738622.1|	-	3.6e-05	23.5	0.0	7.7e-05	22.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.12	gi|300712810|ref|YP_003738622.1|	-	0.00019	21.1	0.2	0.00053	19.7	0.1	1.8	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|300712810|ref|YP_003738622.1|	-	0.00041	20.3	0.0	0.0012	18.9	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|300712810|ref|YP_003738622.1|	-	0.00062	19.6	0.0	0.0021	17.9	0.0	1.9	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|300712810|ref|YP_003738622.1|	-	0.0031	17.4	0.6	0.073	13.1	0.1	3.1	3	1	1	4	4	4	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|300712810|ref|YP_003738622.1|	-	0.0045	17.2	0.0	0.011	15.9	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|300712810|ref|YP_003738622.1|	-	0.0054	16.6	0.0	0.011	15.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|300712810|ref|YP_003738622.1|	-	0.0089	15.7	0.1	0.036	13.7	0.1	2.0	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|300712810|ref|YP_003738622.1|	-	0.013	15.8	0.0	0.034	14.5	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|300712810|ref|YP_003738622.1|	-	0.014	15.2	0.0	0.036	13.9	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|300712810|ref|YP_003738622.1|	-	0.025	14.4	0.0	0.06	13.2	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
FaeA	PF04703.12	gi|300712810|ref|YP_003738622.1|	-	0.027	14.9	1.1	0.074	13.4	0.1	2.1	3	0	0	3	3	2	0	FaeA-like	protein
HTH_36	PF13730.6	gi|300712810|ref|YP_003738622.1|	-	0.04	13.9	0.0	0.095	12.7	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|300712810|ref|YP_003738622.1|	-	0.053	13.6	0.0	0.21	11.8	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
DDRGK	PF09756.9	gi|300712810|ref|YP_003738622.1|	-	0.058	13.0	0.1	0.09	12.4	0.1	1.2	1	0	0	1	1	1	0	DDRGK	domain
HTH_29	PF13551.6	gi|300712810|ref|YP_003738622.1|	-	0.1	12.6	0.0	0.24	11.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_Tnp_ISL3	PF13542.6	gi|300712810|ref|YP_003738622.1|	-	0.11	11.9	0.1	0.18	11.2	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_CodY	PF08222.11	gi|300712810|ref|YP_003738622.1|	-	0.16	11.5	0.7	0.31	10.6	0.1	1.8	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|300712810|ref|YP_003738622.1|	-	0.18	11.9	0.0	0.33	11.0	0.0	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Polbeta	PF18765.1	gi|300712811|ref|YP_003738623.1|	-	6.6e-10	38.9	0.0	9.1e-10	38.5	0.0	1.2	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|300712811|ref|YP_003738623.1|	-	1.3e-09	38.2	0.2	2e-09	37.6	0.2	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.6	gi|300712811|ref|YP_003738623.1|	-	0.0078	16.4	0.1	0.012	15.8	0.1	1.3	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
Adenyl_cycl_N	PF12633.7	gi|300712811|ref|YP_003738623.1|	-	0.013	15.5	0.0	0.018	14.9	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
DUF5606	PF18347.1	gi|300712811|ref|YP_003738623.1|	-	0.18	12.0	0.0	0.36	11.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5606)
AAA_31	PF13614.6	gi|300712814|ref|YP_003738626.1|	-	5.5e-19	68.8	0.0	7.2e-19	68.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|300712814|ref|YP_003738626.1|	-	3.6e-05	23.8	0.0	6.6e-05	23.0	0.0	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF4295	PF14128.6	gi|300712814|ref|YP_003738626.1|	-	0.22	11.4	0.0	0.41	10.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4295)
Cdc6_C	PF09079.11	gi|300712815|ref|YP_003738627.1|	-	5e-15	55.2	0.1	1.2e-14	54.0	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|300712815|ref|YP_003738627.1|	-	3e-11	43.7	0.0	6.2e-11	42.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|300712815|ref|YP_003738627.1|	-	1e-08	35.8	0.4	3.9e-08	33.9	0.0	2.1	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|300712815|ref|YP_003738627.1|	-	8.8e-06	26.2	0.0	1.7e-05	25.2	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Helveticin_J	PF17312.2	gi|300712815|ref|YP_003738627.1|	-	0.0052	15.9	0.0	0.11	11.6	0.0	2.1	2	0	0	2	2	2	1	Bacteriocin	helveticin-J
NACHT	PF05729.12	gi|300712815|ref|YP_003738627.1|	-	0.012	15.6	0.0	0.022	14.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Microtub_bd	PF16796.5	gi|300712815|ref|YP_003738627.1|	-	0.014	15.4	0.0	0.035	14.0	0.0	1.6	1	0	0	1	1	1	0	Microtubule	binding
NB-ARC	PF00931.22	gi|300712815|ref|YP_003738627.1|	-	0.017	14.3	0.0	0.028	13.6	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_32	PF13654.6	gi|300712815|ref|YP_003738627.1|	-	0.034	12.9	0.2	0.15	10.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|300712815|ref|YP_003738627.1|	-	0.056	12.5	0.0	0.099	11.7	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DEAD	PF00270.29	gi|300712815|ref|YP_003738627.1|	-	0.069	12.9	1.7	1.4	8.7	0.3	2.6	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
PSD5	PF07637.11	gi|300712815|ref|YP_003738627.1|	-	0.43	10.9	1.8	0.69	10.3	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1595)
SMC_N	PF02463.19	gi|300712816|ref|YP_003738628.1|	-	7.9e-06	25.5	2.1	0.0032	16.9	0.8	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
Seryl_tRNA_N	PF02403.22	gi|300712816|ref|YP_003738628.1|	-	1.5e-05	25.2	54.7	0.0032	17.7	3.9	5.2	3	1	2	5	5	5	3	Seryl-tRNA	synthetase	N-terminal	domain
Spc7	PF08317.11	gi|300712816|ref|YP_003738628.1|	-	4.4e-05	22.5	69.6	0.00086	18.3	19.7	4.2	2	2	2	4	4	4	3	Spc7	kinetochore	protein
DUF3584	PF12128.8	gi|300712816|ref|YP_003738628.1|	-	0.00053	17.7	56.3	0.019	12.5	21.8	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3584)
Cortex-I_coil	PF09304.10	gi|300712816|ref|YP_003738628.1|	-	0.001	19.3	7.3	0.001	19.3	7.3	5.5	2	2	3	5	5	5	1	Cortexillin	I,	coiled	coil
APG6_N	PF17675.1	gi|300712816|ref|YP_003738628.1|	-	0.005	17.4	10.5	0.005	17.4	10.5	5.3	2	2	1	4	4	4	1	Apg6	coiled-coil	region
DUF1664	PF07889.12	gi|300712816|ref|YP_003738628.1|	-	0.0075	16.3	32.0	0.042	13.9	2.8	5.0	3	1	1	4	4	4	2	Protein	of	unknown	function	(DUF1664)
YscO	PF07321.12	gi|300712816|ref|YP_003738628.1|	-	0.0088	16.0	17.5	0.0088	16.0	17.5	4.4	2	2	2	4	4	3	1	Type	III	secretion	protein	YscO
PRKG1_interact	PF15898.5	gi|300712816|ref|YP_003738628.1|	-	0.028	15.3	11.5	0.028	15.3	11.5	5.3	2	2	4	6	6	6	0	cGMP-dependent	protein	kinase	interacting	domain
AAA_13	PF13166.6	gi|300712816|ref|YP_003738628.1|	-	0.028	13.1	46.5	0.0092	14.7	13.6	2.7	2	1	1	3	3	3	0	AAA	domain
AAA_23	PF13476.6	gi|300712816|ref|YP_003738628.1|	-	0.062	13.8	68.3	1.6e+02	2.6	42.3	4.9	1	1	1	2	2	1	0	AAA	domain
Baculo_PEP_C	PF04513.12	gi|300712816|ref|YP_003738628.1|	-	0.24	11.4	32.8	0.73	9.9	1.1	4.8	3	1	1	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_15	PF13175.6	gi|300712816|ref|YP_003738628.1|	-	0.98	9.1	20.5	5.2	6.7	5.7	3.1	2	1	0	2	2	2	0	AAA	ATPase	domain
OmpH	PF03938.14	gi|300712816|ref|YP_003738628.1|	-	3.7	7.9	63.4	0.24	11.7	10.8	4.5	2	2	1	4	4	4	0	Outer	membrane	protein	(OmpH-like)
DUF4407	PF14362.6	gi|300712816|ref|YP_003738628.1|	-	5.5	6.2	58.9	14	4.9	5.8	4.1	2	1	3	5	5	5	0	Domain	of	unknown	function	(DUF4407)
GAS	PF13851.6	gi|300712816|ref|YP_003738628.1|	-	6.4	6.1	56.6	1.2	8.5	13.6	4.1	2	2	1	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
FPP	PF05911.11	gi|300712816|ref|YP_003738628.1|	-	6.8	4.7	60.1	1.9	6.6	28.4	2.2	1	1	0	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
THOC7	PF05615.13	gi|300712816|ref|YP_003738628.1|	-	7.8	6.8	74.7	0.38	11.0	21.4	4.6	2	2	2	4	4	4	0	Tho	complex	subunit	7
NPV_P10	PF05531.12	gi|300712816|ref|YP_003738628.1|	-	8.3	7.0	30.5	0.61	10.6	0.9	6.4	3	2	1	6	6	5	0	Nucleopolyhedrovirus	P10	protein
MAD	PF05557.13	gi|300712816|ref|YP_003738628.1|	-	9.8	4.4	56.3	4.2	5.6	27.3	2.2	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
CCG	PF02754.16	gi|300712817|ref|YP_003738629.1|	-	6.4e-16	58.3	0.0	4.8e-12	45.9	0.1	2.5	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|300712817|ref|YP_003738629.1|	-	3.2e-10	40.0	18.3	7e-09	35.7	9.3	2.7	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|300712817|ref|YP_003738629.1|	-	3.7e-09	36.0	14.0	6.5e-05	22.6	2.3	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|300712817|ref|YP_003738629.1|	-	4.4e-09	36.7	5.7	5.2e-09	36.4	4.0	2.0	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|300712817|ref|YP_003738629.1|	-	5.4e-09	36.1	7.3	8.4e-09	35.5	5.5	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|300712817|ref|YP_003738629.1|	-	4.4e-07	29.6	11.6	0.00085	19.3	2.0	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|300712817|ref|YP_003738629.1|	-	4.2e-06	27.2	24.5	1e-05	26.0	12.9	2.4	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|300712817|ref|YP_003738629.1|	-	0.0004	20.3	24.4	0.00041	20.3	5.0	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|300712817|ref|YP_003738629.1|	-	0.0004	20.4	12.8	0.017	15.2	0.5	2.8	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|300712817|ref|YP_003738629.1|	-	0.00077	20.4	12.5	0.019	15.9	13.4	2.5	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.7	gi|300712817|ref|YP_003738629.1|	-	0.00082	19.7	18.1	0.0046	17.4	1.0	2.9	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|300712817|ref|YP_003738629.1|	-	0.0012	19.0	2.3	0.77	10.0	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|300712817|ref|YP_003738629.1|	-	0.0028	18.2	15.7	0.0039	17.7	12.6	2.6	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Nitrate_red_gam	PF02665.14	gi|300712817|ref|YP_003738629.1|	-	0.003	17.1	3.5	0.0055	16.3	3.5	1.4	1	0	0	1	1	1	1	Nitrate	reductase	gamma	subunit
Fer4_22	PF17179.4	gi|300712817|ref|YP_003738629.1|	-	0.0096	16.8	7.9	0.045	14.6	0.1	2.8	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|300712817|ref|YP_003738629.1|	-	0.024	15.4	5.7	0.31	11.8	0.5	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF3376	PF11856.8	gi|300712817|ref|YP_003738629.1|	-	0.099	11.6	0.0	0.64	8.9	0.0	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3376)
Fer4_13	PF13370.6	gi|300712817|ref|YP_003738629.1|	-	0.52	10.9	15.9	2.5	8.7	3.8	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|300712817|ref|YP_003738629.1|	-	3.9	8.6	26.2	1	10.4	6.1	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
ETF_alpha	PF00766.19	gi|300712818|ref|YP_003738630.1|	-	6.8e-37	125.4	0.2	2.2e-36	123.7	0.2	1.9	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|300712818|ref|YP_003738630.1|	-	2.2e-25	89.6	0.3	3.7e-25	88.9	0.3	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
DUF1949	PF09186.11	gi|300712818|ref|YP_003738630.1|	-	0.66	9.9	3.3	7.6	6.5	0.1	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1949)
ETF	PF01012.21	gi|300712819|ref|YP_003738631.1|	-	2.6e-39	135.0	3.6	3.4e-39	134.6	3.6	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
CoA_binding_2	PF13380.6	gi|300712819|ref|YP_003738631.1|	-	0.16	12.5	0.7	0.32	11.5	0.3	1.7	2	0	0	2	2	2	0	CoA	binding	domain
ECH_1	PF00378.20	gi|300712820|ref|YP_003738632.1|	-	4.6e-28	98.2	0.0	5e-28	98.1	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|300712820|ref|YP_003738632.1|	-	1.5e-15	57.5	0.1	2.2e-15	57.0	0.1	1.1	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
Flavin_Reduct	PF01613.18	gi|300712821|ref|YP_003738633.1|	-	1.5e-22	80.3	0.1	1.9e-22	80.0	0.1	1.1	1	0	0	1	1	1	1	Flavin	reductase	like	domain
Polysacc_deac_1	PF01522.21	gi|300712823|ref|YP_003738635.1|	-	6e-09	35.9	0.0	8.3e-09	35.4	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|300712823|ref|YP_003738635.1|	-	1.4e-06	28.1	0.0	2.1e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
Glyco_hydro_57	PF03065.15	gi|300712823|ref|YP_003738635.1|	-	6.1e-05	22.4	0.0	7.3e-05	22.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
DUF5059	PF16502.5	gi|300712823|ref|YP_003738635.1|	-	0.13	10.9	0.0	0.18	10.5	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5059)
HpcH_HpaI	PF03328.14	gi|300712824|ref|YP_003738636.1|	-	4.2e-33	114.3	0.1	9.6e-33	113.2	0.0	1.5	2	0	0	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|300712824|ref|YP_003738636.1|	-	7.9e-10	38.4	0.0	0.00085	18.6	0.0	2.1	1	1	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
AP_endonuc_2	PF01261.24	gi|300712824|ref|YP_003738636.1|	-	5.3e-05	22.8	0.3	0.15	11.4	0.1	2.4	2	0	0	2	2	2	2	Xylose	isomerase-like	TIM	barrel
Malate_synthase	PF01274.22	gi|300712824|ref|YP_003738636.1|	-	8.5e-05	21.0	0.0	0.013	13.8	0.0	2.4	3	0	0	3	3	3	2	Malate	synthase
Bac_luciferase	PF00296.20	gi|300712825|ref|YP_003738637.1|	-	8.3e-51	173.3	0.0	1e-50	173.0	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Amidohydro_2	PF04909.14	gi|300712826|ref|YP_003738638.1|	-	0.0022	17.8	0.1	0.0059	16.4	0.0	1.8	2	0	0	2	2	2	1	Amidohydrolase
VCH_CASS14	PF18315.1	gi|300712826|ref|YP_003738638.1|	-	0.069	13.2	0.2	0.15	12.1	0.2	1.5	1	0	0	1	1	1	0	Integron	cassette	protein	VCH_CASS1	chain
ApbA	PF02558.16	gi|300712827|ref|YP_003738639.1|	-	2.7e-35	121.3	0.1	3.6e-35	120.8	0.1	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ApbA_C	PF08546.11	gi|300712827|ref|YP_003738639.1|	-	2.4e-32	111.8	0.0	3.7e-32	111.1	0.0	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
NAD_Gly3P_dh_N	PF01210.23	gi|300712827|ref|YP_003738639.1|	-	1.2e-09	38.4	0.0	2.3e-09	37.4	0.0	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.15	gi|300712827|ref|YP_003738639.1|	-	3.6e-05	24.0	0.0	7.7e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|300712827|ref|YP_003738639.1|	-	0.00012	21.7	0.1	0.00021	20.9	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.27	gi|300712827|ref|YP_003738639.1|	-	0.00054	20.5	0.2	0.0012	19.3	0.2	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.17	gi|300712827|ref|YP_003738639.1|	-	0.00067	20.2	0.0	0.0015	19.1	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_2	PF07992.14	gi|300712827|ref|YP_003738639.1|	-	0.0047	16.2	0.4	0.016	14.5	0.1	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|300712827|ref|YP_003738639.1|	-	0.0085	16.0	0.2	0.16	11.8	0.1	2.7	2	2	1	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Anoct_dimer	PF16178.5	gi|300712827|ref|YP_003738639.1|	-	0.035	13.8	0.0	0.057	13.1	0.0	1.2	1	0	0	1	1	1	0	Dimerisation	domain	of	Ca+-activated	chloride-channel,	anoctamin
IlvN	PF07991.12	gi|300712827|ref|YP_003738639.1|	-	0.14	11.7	0.1	0.22	11.1	0.1	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
4HBT	PF03061.22	gi|300712828|ref|YP_003738640.1|	-	2.5e-15	56.6	0.1	3.9e-15	56.0	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|300712828|ref|YP_003738640.1|	-	1.7e-11	44.4	0.0	2e-11	44.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|300712828|ref|YP_003738640.1|	-	2.9e-06	27.7	0.0	3.5e-06	27.4	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
adh_short_C2	PF13561.6	gi|300712829|ref|YP_003738641.1|	-	1e-62	211.8	0.4	1.2e-62	211.5	0.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|300712829|ref|YP_003738641.1|	-	1.3e-55	187.9	0.1	1.5e-55	187.7	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|300712829|ref|YP_003738641.1|	-	2.7e-13	50.2	0.1	3.2e-13	50.0	0.1	1.1	1	0	0	1	1	1	1	KR	domain
Polysacc_synt_2	PF02719.15	gi|300712829|ref|YP_003738641.1|	-	0.0001	21.6	0.0	0.00013	21.2	0.0	1.1	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Epimerase	PF01370.21	gi|300712829|ref|YP_003738641.1|	-	0.00012	21.6	0.0	0.0002	20.9	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Glyco_transf_4	PF13439.6	gi|300712829|ref|YP_003738641.1|	-	0.0026	17.8	0.0	0.59	10.1	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	Family	4
NAD_binding_10	PF13460.6	gi|300712829|ref|YP_003738641.1|	-	0.0063	16.4	0.2	0.011	15.7	0.2	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
Glyco_trans_4_4	PF13579.6	gi|300712829|ref|YP_003738641.1|	-	0.037	14.5	0.0	1.2	9.6	0.0	2.2	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
THF_DHG_CYH_C	PF02882.19	gi|300712829|ref|YP_003738641.1|	-	0.083	12.2	0.0	0.18	11.1	0.0	1.6	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
BKACE	PF05853.12	gi|300712830|ref|YP_003738642.1|	-	1.3e-102	342.8	0.0	1.5e-102	342.6	0.0	1.0	1	0	0	1	1	1	1	beta-keto	acid	cleavage	enzyme
IclR	PF01614.18	gi|300712831|ref|YP_003738643.1|	-	3.4e-36	123.9	0.0	8.8e-36	122.6	0.0	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|300712831|ref|YP_003738643.1|	-	1.5e-13	50.3	0.0	3.8e-13	49.0	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|300712831|ref|YP_003738643.1|	-	2.5e-08	33.4	0.0	4.9e-08	32.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|300712831|ref|YP_003738643.1|	-	3.6e-08	33.1	0.0	6.7e-08	32.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|300712831|ref|YP_003738643.1|	-	4.7e-06	26.4	0.0	1e-05	25.3	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|300712831|ref|YP_003738643.1|	-	6.4e-06	26.1	0.0	1.7e-05	24.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|300712831|ref|YP_003738643.1|	-	8.3e-05	22.4	0.0	0.0002	21.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|300712831|ref|YP_003738643.1|	-	0.00033	20.5	0.0	0.00072	19.5	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_34	PF13601.6	gi|300712831|ref|YP_003738643.1|	-	0.00034	20.7	0.0	0.00091	19.4	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF3489	PF11994.8	gi|300712831|ref|YP_003738643.1|	-	0.00047	20.2	0.0	0.001	19.1	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3489)
DUF4423	PF14394.6	gi|300712831|ref|YP_003738643.1|	-	0.00093	18.9	0.0	0.0015	18.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_DeoR	PF08220.12	gi|300712831|ref|YP_003738643.1|	-	0.0016	18.1	0.1	0.0046	16.7	0.0	1.7	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|300712831|ref|YP_003738643.1|	-	0.0021	18.2	0.0	0.0046	17.1	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|300712831|ref|YP_003738643.1|	-	0.0041	17.0	0.0	0.0075	16.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|300712831|ref|YP_003738643.1|	-	0.0041	17.2	0.0	0.01	16.0	0.0	1.6	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|300712831|ref|YP_003738643.1|	-	0.017	15.6	0.6	0.032	14.7	0.1	1.7	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|300712831|ref|YP_003738643.1|	-	0.049	14.0	0.0	0.11	12.8	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_40	PF14493.6	gi|300712831|ref|YP_003738643.1|	-	0.078	13.4	0.2	1	9.8	0.0	2.4	2	1	0	2	2	2	0	Helix-turn-helix	domain
RPA_C	PF08784.11	gi|300712831|ref|YP_003738643.1|	-	0.08	13.6	0.0	0.16	12.6	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF742	PF05331.11	gi|300712831|ref|YP_003738643.1|	-	0.094	12.5	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_45	PF14947.6	gi|300712831|ref|YP_003738643.1|	-	0.098	12.7	0.0	0.25	11.3	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
Acyl-CoA_dh_1	PF00441.24	gi|300712832|ref|YP_003738644.1|	-	1.9e-39	135.3	0.1	2.6e-39	134.8	0.1	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|300712832|ref|YP_003738644.1|	-	5.8e-22	77.7	0.0	9.9e-22	77.0	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|300712832|ref|YP_003738644.1|	-	8.3e-15	55.4	0.1	3e-14	53.6	0.1	1.9	1	1	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|300712832|ref|YP_003738644.1|	-	4.1e-14	53.0	0.1	6.5e-14	52.4	0.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
ECH_1	PF00378.20	gi|300712833|ref|YP_003738645.1|	-	3.7e-57	193.5	0.0	4.2e-57	193.3	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|300712833|ref|YP_003738645.1|	-	2.2e-37	129.3	0.2	6.1e-36	124.6	0.4	1.9	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
SDH_sah	PF01972.16	gi|300712833|ref|YP_003738645.1|	-	0.06	12.3	0.0	0.082	11.9	0.0	1.2	1	0	0	1	1	1	0	Serine	dehydrogenase	proteinase
DUF4841	PF16129.5	gi|300712833|ref|YP_003738645.1|	-	0.19	12.0	0.0	0.42	10.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4841)
Aldedh	PF00171.22	gi|300712834|ref|YP_003738646.1|	-	1.1e-169	564.8	0.1	1.3e-169	564.6	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
NMT1_3	PF16868.5	gi|300712835|ref|YP_003738647.1|	-	1.8e-29	103.1	0.0	2.2e-29	102.8	0.0	1.0	1	0	0	1	1	1	1	NMT1-like	family
TAT_signal	PF10518.9	gi|300712835|ref|YP_003738647.1|	-	0.00059	19.6	0.5	0.0011	18.7	0.5	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
adh_short_C2	PF13561.6	gi|300712836|ref|YP_003738648.1|	-	3.3e-42	144.6	0.0	4.5e-42	144.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|300712836|ref|YP_003738648.1|	-	1.5e-36	125.7	0.0	1.8e-36	125.5	0.0	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|300712836|ref|YP_003738648.1|	-	3.7e-06	27.0	0.0	9.4e-06	25.7	0.0	1.6	1	1	1	2	2	2	1	KR	domain
IMPDH	PF00478.25	gi|300712836|ref|YP_003738648.1|	-	0.061	12.3	0.8	0.43	9.5	0.3	2.0	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
3HCDH_N	PF02737.18	gi|300712836|ref|YP_003738648.1|	-	0.093	12.6	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DctM	PF06808.12	gi|300712837|ref|YP_003738649.1|	-	1e-59	202.5	41.0	1.7e-59	201.8	41.0	1.3	1	0	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
SbcCD_C	PF13558.6	gi|300712837|ref|YP_003738649.1|	-	0.24	11.6	0.8	0.6	10.4	0.0	2.0	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
Usp	PF00582.26	gi|300712838|ref|YP_003738650.1|	-	3.3e-16	60.1	0.2	3.7e-16	59.9	0.2	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Kinesin	PF00225.23	gi|300712840|ref|YP_003738652.1|	-	0.003	16.5	0.0	0.003	16.5	0.0	1.1	1	0	0	1	1	1	1	Kinesin	motor	domain
Microtub_bd	PF16796.5	gi|300712840|ref|YP_003738652.1|	-	0.079	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Microtubule	binding
CoA_transf_3	PF02515.17	gi|300712842|ref|YP_003738654.1|	-	8.5e-120	400.2	0.0	9.6e-120	400.1	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
DUF3045	PF11243.8	gi|300712842|ref|YP_003738654.1|	-	0.2	11.9	0.0	0.37	11.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3045)
RraA-like	PF03737.15	gi|300712843|ref|YP_003738655.1|	-	1.8e-32	112.6	0.1	2.2e-32	112.3	0.1	1.1	1	0	0	1	1	1	1	Aldolase/RraA
Putative_PNPOx	PF01243.20	gi|300712845|ref|YP_003738657.1|	-	1.3e-14	54.1	0.0	1.8e-14	53.6	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Pyridox_ox_2	PF12900.7	gi|300712845|ref|YP_003738657.1|	-	2.2e-08	34.2	0.2	4.5e-08	33.2	0.0	1.6	2	0	0	2	2	2	1	Pyridoxamine	5'-phosphate	oxidase
Pyrid_ox_like	PF16242.5	gi|300712845|ref|YP_003738657.1|	-	2.3e-05	24.0	0.0	3.4e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase	like
Alkyl_sulf_dimr	PF14863.6	gi|300712845|ref|YP_003738657.1|	-	0.028	14.9	0.0	0.042	14.3	0.0	1.2	1	0	0	1	1	1	0	Alkyl	sulfatase	dimerisation
Amidase	PF01425.21	gi|300712846|ref|YP_003738658.1|	-	3.6e-89	299.8	0.0	4.5e-89	299.5	0.0	1.0	1	0	0	1	1	1	1	Amidase
MFS_1	PF07690.16	gi|300712847|ref|YP_003738659.1|	-	7e-44	150.2	70.8	6e-38	130.7	44.0	1.9	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|300712847|ref|YP_003738659.1|	-	1.3e-10	40.7	22.7	1.6e-08	33.8	9.9	2.6	1	1	2	3	3	3	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|300712847|ref|YP_003738659.1|	-	0.00017	20.6	13.1	0.00017	20.6	13.1	2.5	1	1	1	2	2	2	1	Sugar	(and	other)	transporter
LacY_symp	PF01306.19	gi|300712847|ref|YP_003738659.1|	-	0.002	17.0	8.4	0.002	17.0	8.4	2.9	2	1	1	3	3	3	1	LacY	proton/sugar	symporter
DUF3464	PF11947.8	gi|300712847|ref|YP_003738659.1|	-	3.4	7.4	12.0	1.8	8.3	2.3	2.6	2	1	0	2	2	2	0	Photosynthesis	affected	mutant	68
ADH_zinc_N_2	PF13602.6	gi|300712848|ref|YP_003738660.1|	-	3.3e-13	50.8	0.0	8.4e-13	49.5	0.0	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|300712848|ref|YP_003738660.1|	-	5e-11	42.7	0.0	1.4e-10	41.2	0.0	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|300712848|ref|YP_003738660.1|	-	9.1e-10	38.4	0.0	2.2e-08	33.9	0.0	2.2	1	1	1	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ETF	PF01012.21	gi|300712848|ref|YP_003738660.1|	-	0.052	13.4	0.1	0.1	12.5	0.1	1.5	1	0	0	1	1	1	0	Electron	transfer	flavoprotein	domain
ADH_N_2	PF16884.5	gi|300712848|ref|YP_003738660.1|	-	0.15	12.0	0.0	0.35	10.8	0.0	1.6	1	1	0	1	1	1	0	N-terminal	domain	of	oxidoreductase
Ldh_1_N	PF00056.23	gi|300712849|ref|YP_003738661.1|	-	1.8e-17	63.8	0.0	2.5e-16	60.1	0.0	2.2	1	1	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|300712849|ref|YP_003738661.1|	-	6.2e-16	58.8	0.0	1.3e-15	57.8	0.0	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
DAO	PF01266.24	gi|300712849|ref|YP_003738661.1|	-	0.00061	19.5	2.6	0.00075	19.2	1.5	1.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
TrkA_N	PF02254.18	gi|300712849|ref|YP_003738661.1|	-	0.046	14.0	0.1	0.1	12.8	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Trp_halogenase	PF04820.14	gi|300712849|ref|YP_003738661.1|	-	0.055	12.3	0.2	0.074	11.9	0.2	1.1	1	0	0	1	1	1	0	Tryptophan	halogenase
Sacchrp_dh_NADP	PF03435.18	gi|300712849|ref|YP_003738661.1|	-	0.11	12.7	0.2	0.32	11.3	0.2	1.8	2	0	0	2	2	2	0	Saccharopine	dehydrogenase	NADP	binding	domain
Thi4	PF01946.17	gi|300712849|ref|YP_003738661.1|	-	0.22	10.7	0.5	0.39	9.9	0.5	1.4	1	0	0	1	1	1	0	Thi4	family
CoA_transf_3	PF02515.17	gi|300712850|ref|YP_003738662.1|	-	1.2e-111	373.4	0.0	1.3e-111	373.3	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
CMD	PF02627.20	gi|300712851|ref|YP_003738663.1|	-	3.7e-09	36.5	0.9	2.6e-07	30.6	0.0	2.1	1	1	1	2	2	2	2	Carboxymuconolactone	decarboxylase	family
Death	PF00531.22	gi|300712851|ref|YP_003738663.1|	-	0.085	13.0	0.0	0.2	11.8	0.0	1.7	1	1	0	1	1	1	0	Death	domain
FAA_hydrolase	PF01557.18	gi|300712852|ref|YP_003738664.1|	-	6.2e-52	176.4	0.1	6.9e-52	176.3	0.1	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Cdc6_C	PF09079.11	gi|300712853|ref|YP_003738665.1|	-	7.3e-17	61.1	0.0	1.9e-16	59.8	0.0	1.8	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|300712853|ref|YP_003738665.1|	-	6.6e-12	45.9	0.0	1.6e-11	44.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|300712853|ref|YP_003738665.1|	-	1e-10	42.3	0.9	6.1e-10	39.7	0.1	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|300712853|ref|YP_003738665.1|	-	3.2e-06	27.2	0.0	7.4e-06	26.0	0.0	1.6	1	0	0	1	1	1	1	NACHT	domain
AAA	PF00004.29	gi|300712853|ref|YP_003738665.1|	-	4e-06	27.3	0.0	9.9e-06	26.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|300712853|ref|YP_003738665.1|	-	1.2e-05	25.3	0.0	2.7e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|300712853|ref|YP_003738665.1|	-	9.5e-05	21.7	0.0	0.00034	19.9	0.0	1.8	2	0	0	2	2	2	1	NB-ARC	domain
TniB	PF05621.11	gi|300712853|ref|YP_003738665.1|	-	9.7e-05	21.9	0.0	0.00017	21.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA_7	PF12775.7	gi|300712853|ref|YP_003738665.1|	-	0.00049	19.7	0.0	0.00082	18.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|300712853|ref|YP_003738665.1|	-	0.00058	20.2	0.0	0.0016	18.8	0.0	1.7	2	0	0	2	2	1	1	RNA	helicase
DUF815	PF05673.13	gi|300712853|ref|YP_003738665.1|	-	0.0011	18.1	0.0	0.0019	17.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TsaE	PF02367.17	gi|300712853|ref|YP_003738665.1|	-	0.003	17.6	0.0	0.0056	16.7	0.0	1.4	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_5	PF07728.14	gi|300712853|ref|YP_003738665.1|	-	0.0047	16.9	0.0	0.013	15.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_32	PF13654.6	gi|300712853|ref|YP_003738665.1|	-	0.0067	15.3	0.1	0.89	8.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|300712853|ref|YP_003738665.1|	-	0.013	16.0	0.0	0.039	14.5	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.9	gi|300712853|ref|YP_003738665.1|	-	0.018	14.0	0.0	0.039	12.9	0.0	1.5	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_25	PF13481.6	gi|300712853|ref|YP_003738665.1|	-	0.019	14.6	0.5	0.099	12.2	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|300712853|ref|YP_003738665.1|	-	0.031	14.0	0.0	0.058	13.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
ABC_tran	PF00005.27	gi|300712853|ref|YP_003738665.1|	-	0.046	14.2	0.0	0.2	12.2	0.0	2.0	2	0	0	2	2	2	0	ABC	transporter
DEAD	PF00270.29	gi|300712853|ref|YP_003738665.1|	-	0.054	13.3	0.1	3.9	7.2	0.0	2.4	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
DUF87	PF01935.17	gi|300712853|ref|YP_003738665.1|	-	0.071	13.2	0.0	0.23	11.5	0.0	1.8	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
APS_kinase	PF01583.20	gi|300712853|ref|YP_003738665.1|	-	0.076	12.9	0.0	5.8	6.8	0.0	2.5	2	0	0	2	2	2	0	Adenylylsulphate	kinase
Zeta_toxin	PF06414.12	gi|300712853|ref|YP_003738665.1|	-	0.082	12.2	0.0	0.29	10.4	0.0	1.8	2	0	0	2	2	2	0	Zeta	toxin
AAA_14	PF13173.6	gi|300712853|ref|YP_003738665.1|	-	0.088	12.8	0.1	0.22	11.5	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|300712853|ref|YP_003738665.1|	-	0.11	12.3	0.0	0.46	10.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|300712853|ref|YP_003738665.1|	-	0.11	12.4	0.0	0.27	11.2	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
RsgA_GTPase	PF03193.16	gi|300712853|ref|YP_003738665.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
PduV-EutP	PF10662.9	gi|300712853|ref|YP_003738665.1|	-	0.17	11.6	0.0	0.34	10.7	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
TRAM	PF01938.20	gi|300712856|ref|YP_003738668.1|	-	5.8e-11	42.2	0.2	6.2e-11	42.1	0.2	1.0	1	0	0	1	1	1	1	TRAM	domain
DUF5089	PF17002.5	gi|300712856|ref|YP_003738668.1|	-	0.08	12.8	0.0	0.08	12.8	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5089)
PadR	PF03551.14	gi|300712858|ref|YP_003738670.1|	-	1.6e-16	60.0	0.5	2e-16	59.7	0.5	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|300712858|ref|YP_003738670.1|	-	0.0026	17.7	0.1	0.0035	17.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|300712858|ref|YP_003738670.1|	-	0.0092	16.5	0.1	0.01	16.3	0.1	1.3	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|300712858|ref|YP_003738670.1|	-	0.024	14.5	0.0	0.036	13.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
MarR_2	PF12802.7	gi|300712858|ref|YP_003738670.1|	-	0.062	13.2	0.2	1.3	8.9	0.0	2.5	3	0	0	3	3	3	0	MarR	family
PadR	PF03551.14	gi|300712859|ref|YP_003738671.1|	-	6.3e-13	48.5	0.2	1.1e-12	47.8	0.1	1.4	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
RTP	PF02334.16	gi|300712859|ref|YP_003738671.1|	-	0.033	14.8	0.0	0.038	14.6	0.0	1.1	1	0	0	1	1	1	0	Replication	terminator	protein
DUF4932	PF16286.5	gi|300712860|ref|YP_003738672.1|	-	0.035	13.4	0.0	0.042	13.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4932)
FCD	PF07729.12	gi|300712860|ref|YP_003738672.1|	-	0.047	14.1	0.2	0.069	13.6	0.2	1.5	1	0	0	1	1	1	0	FCD	domain
HTH_34	PF13601.6	gi|300712861|ref|YP_003738673.1|	-	0.00055	20.1	0.0	0.0012	18.9	0.0	1.5	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|300712861|ref|YP_003738673.1|	-	0.0028	17.7	0.1	0.0047	17.0	0.0	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|300712861|ref|YP_003738673.1|	-	0.0084	16.2	0.0	0.01	15.9	0.0	1.2	1	0	0	1	1	1	1	Replication-relaxation
HTH_IclR	PF09339.10	gi|300712861|ref|YP_003738673.1|	-	0.015	15.1	0.0	0.026	14.3	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Rio2_N	PF09202.11	gi|300712861|ref|YP_003738673.1|	-	0.033	14.4	0.0	0.044	14.0	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
MarR_2	PF12802.7	gi|300712861|ref|YP_003738673.1|	-	0.046	13.6	0.0	0.058	13.3	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_AsnC-type	PF13404.6	gi|300712863|ref|YP_003738675.1|	-	7.8e-05	22.4	0.1	0.00022	21.0	0.1	1.8	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|300712863|ref|YP_003738675.1|	-	0.0026	17.3	0.0	0.011	15.3	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.10	gi|300712863|ref|YP_003738675.1|	-	0.0053	16.7	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
DUF1460	PF07313.12	gi|300712863|ref|YP_003738675.1|	-	0.013	14.9	0.1	0.02	14.3	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1460)
SBP_bac_5	PF00496.22	gi|300712864|ref|YP_003738676.1|	-	3.3e-58	197.4	0.0	3.2e-49	167.9	0.0	2.1	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|300712865|ref|YP_003738677.1|	-	2.9e-36	124.9	11.9	2.9e-36	124.9	11.9	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|300712866|ref|YP_003738678.1|	-	3.5e-24	85.5	14.2	3.5e-24	85.5	14.2	2.1	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|300712866|ref|YP_003738678.1|	-	0.0001	22.2	0.0	0.0001	22.2	0.0	3.1	4	1	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Fanconi_A	PF03511.14	gi|300712866|ref|YP_003738678.1|	-	0.04	13.8	0.0	0.11	12.4	0.0	1.7	1	0	0	1	1	1	0	Fanconi	anaemia	group	A	protein
ABC_tran	PF00005.27	gi|300712867|ref|YP_003738679.1|	-	1.3e-27	97.0	0.0	2.1e-27	96.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|300712867|ref|YP_003738679.1|	-	2.6e-20	72.7	0.1	5.5e-20	71.7	0.1	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|300712867|ref|YP_003738679.1|	-	4.5e-07	30.0	0.5	0.0001	22.3	0.0	2.1	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|300712867|ref|YP_003738679.1|	-	2.3e-06	27.9	1.2	7.6e-05	23.0	0.7	2.8	2	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|300712867|ref|YP_003738679.1|	-	4.3e-05	23.1	1.5	0.00039	19.9	1.5	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_5	PF07728.14	gi|300712867|ref|YP_003738679.1|	-	0.00028	20.9	0.0	0.00063	19.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.22	gi|300712867|ref|YP_003738679.1|	-	0.0015	17.8	0.5	0.015	14.5	0.1	2.6	2	1	0	2	2	2	1	NB-ARC	domain
Mg_chelatase	PF01078.21	gi|300712867|ref|YP_003738679.1|	-	0.003	17.0	0.0	0.0071	15.7	0.0	1.6	2	0	0	2	2	1	1	Magnesium	chelatase,	subunit	ChlI
NTPase_1	PF03266.15	gi|300712867|ref|YP_003738679.1|	-	0.0032	17.4	0.1	0.0061	16.5	0.1	1.5	1	0	0	1	1	1	1	NTPase
AAA_16	PF13191.6	gi|300712867|ref|YP_003738679.1|	-	0.0037	17.7	0.1	0.0081	16.6	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|300712867|ref|YP_003738679.1|	-	0.0071	16.1	0.1	0.014	15.2	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
PRK	PF00485.18	gi|300712867|ref|YP_003738679.1|	-	0.0083	15.9	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
MobB	PF03205.14	gi|300712867|ref|YP_003738679.1|	-	0.0096	15.8	0.0	0.021	14.7	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA	PF00004.29	gi|300712867|ref|YP_003738679.1|	-	0.01	16.3	0.1	0.027	14.9	0.1	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_ATPase	PF09818.9	gi|300712867|ref|YP_003738679.1|	-	0.012	14.4	0.2	0.022	13.6	0.2	1.4	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
T2SSE	PF00437.20	gi|300712867|ref|YP_003738679.1|	-	0.015	14.4	0.1	0.027	13.5	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
T6SS_VasJ	PF16989.5	gi|300712867|ref|YP_003738679.1|	-	0.021	14.3	0.0	0.041	13.4	0.0	1.4	1	0	0	1	1	1	0	Type	VI	secretion,	EvfE,	EvfF,	ImpA,	BimE,	VC_A0119,	VasJ
NACHT	PF05729.12	gi|300712867|ref|YP_003738679.1|	-	0.026	14.5	0.0	0.05	13.5	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.6	gi|300712867|ref|YP_003738679.1|	-	0.034	14.3	0.0	0.083	13.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|300712867|ref|YP_003738679.1|	-	0.035	14.2	0.4	0.084	13.0	0.1	1.7	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_30	PF13604.6	gi|300712867|ref|YP_003738679.1|	-	0.041	13.6	0.3	0.25	11.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|300712867|ref|YP_003738679.1|	-	0.044	13.7	0.1	0.098	12.6	0.0	1.6	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|300712867|ref|YP_003738679.1|	-	0.059	13.7	0.2	0.11	12.8	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|300712867|ref|YP_003738679.1|	-	0.08	12.7	0.0	0.19	11.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|300712867|ref|YP_003738679.1|	-	0.086	12.3	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
G-alpha	PF00503.20	gi|300712867|ref|YP_003738679.1|	-	0.14	11.3	0.1	0.23	10.6	0.1	1.4	1	1	0	1	1	1	0	G-protein	alpha	subunit
TsaE	PF02367.17	gi|300712867|ref|YP_003738679.1|	-	0.16	12.0	0.0	0.29	11.1	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Pox_A32	PF04665.12	gi|300712867|ref|YP_003738679.1|	-	0.19	11.1	0.2	0.86	9.0	0.0	1.9	2	0	0	2	2	2	0	Poxvirus	A32	protein
AAA_18	PF13238.6	gi|300712867|ref|YP_003738679.1|	-	0.21	12.1	1.2	0.4	11.2	0.1	2.1	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|300712868|ref|YP_003738680.1|	-	1.1e-29	103.7	0.0	1.5e-29	103.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|300712868|ref|YP_003738680.1|	-	6e-19	68.3	0.1	1.1e-18	67.4	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|300712868|ref|YP_003738680.1|	-	0.00047	20.1	0.4	0.018	14.9	0.1	2.1	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|300712868|ref|YP_003738680.1|	-	0.015	14.7	0.0	0.035	13.5	0.0	1.6	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
z-alpha	PF02295.17	gi|300712868|ref|YP_003738680.1|	-	0.041	13.9	0.0	58	3.8	0.0	3.6	4	0	0	4	4	4	0	Adenosine	deaminase	z-alpha	domain
AAA_22	PF13401.6	gi|300712868|ref|YP_003738680.1|	-	0.044	14.1	0.0	0.12	12.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|300712868|ref|YP_003738680.1|	-	0.15	11.8	0.1	0.29	10.9	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATPase	PF06745.13	gi|300712868|ref|YP_003738680.1|	-	0.26	10.6	0.4	2.3	7.5	0.5	2.0	2	0	0	2	2	2	0	KaiC
NB-ARC	PF00931.22	gi|300712868|ref|YP_003738680.1|	-	0.26	10.4	0.0	0.4	9.8	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Creatininase	PF02633.14	gi|300712869|ref|YP_003738681.1|	-	2.2e-56	191.0	0.0	2.5e-56	190.9	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Peptidase_M20	PF01546.28	gi|300712870|ref|YP_003738682.1|	-	1.1e-31	110.2	0.0	1.4e-31	109.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|300712870|ref|YP_003738682.1|	-	7.9e-20	70.8	0.0	2.4e-19	69.2	0.0	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Creatininase	PF02633.14	gi|300712872|ref|YP_003738684.1|	-	1.6e-27	96.6	0.0	1.7e-27	96.4	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Lys_export	PF03956.13	gi|300712873|ref|YP_003738685.1|	-	5.4e-62	208.7	31.4	1.2e-54	184.8	19.2	2.0	2	0	0	2	2	2	2	Lysine	exporter	LysO
Cons_hypoth698	PF03601.14	gi|300712874|ref|YP_003738686.1|	-	7e-14	51.4	0.0	7e-14	51.4	0.0	1.4	2	0	0	2	2	2	1	Conserved	hypothetical	protein	698
TctA	PF01970.16	gi|300712875|ref|YP_003738687.1|	-	9.1e-132	439.6	36.8	1.2e-131	439.3	36.8	1.1	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
TMP_2	PF06791.13	gi|300712875|ref|YP_003738687.1|	-	0.41	10.3	6.4	0.27	10.9	3.3	2.1	2	0	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
IclR	PF01614.18	gi|300712876|ref|YP_003738688.1|	-	8.9e-29	99.9	0.0	1.5e-28	99.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|300712876|ref|YP_003738688.1|	-	1.2e-11	44.2	0.0	9.4e-11	41.4	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|300712876|ref|YP_003738688.1|	-	0.00015	21.6	0.2	0.00054	19.8	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|300712876|ref|YP_003738688.1|	-	0.0038	16.7	0.0	0.012	15.1	0.0	1.9	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|300712876|ref|YP_003738688.1|	-	0.0057	16.7	0.0	0.012	15.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|300712876|ref|YP_003738688.1|	-	0.0088	15.9	0.0	0.019	14.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF2250	PF10007.9	gi|300712876|ref|YP_003738688.1|	-	0.021	14.9	0.3	0.06	13.5	0.1	1.8	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_23	PF13384.6	gi|300712876|ref|YP_003738688.1|	-	0.026	14.3	0.0	0.091	12.6	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.19	gi|300712876|ref|YP_003738688.1|	-	0.028	14.6	0.0	0.068	13.4	0.0	1.7	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.6	gi|300712876|ref|YP_003738688.1|	-	0.031	14.8	0.1	0.087	13.3	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|300712876|ref|YP_003738688.1|	-	0.038	13.9	0.1	0.21	11.6	0.0	2.4	2	1	0	2	2	2	0	HTH	domain
HTH_45	PF14947.6	gi|300712876|ref|YP_003738688.1|	-	0.046	13.7	2.0	0.12	12.4	0.1	2.4	3	0	0	3	3	3	0	Winged	helix-turn-helix
MarR	PF01047.22	gi|300712876|ref|YP_003738688.1|	-	0.082	12.8	0.0	0.18	11.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Amidohydro_2	PF04909.14	gi|300712877|ref|YP_003738689.1|	-	5.3e-28	98.6	0.1	6.2e-28	98.4	0.1	1.0	1	0	0	1	1	1	1	Amidohydrolase
Rieske	PF00355.26	gi|300712878|ref|YP_003738690.1|	-	9.7e-15	54.3	0.1	1.3e-13	50.7	0.1	2.0	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.6	gi|300712878|ref|YP_003738690.1|	-	3.6e-13	49.3	0.0	4.1e-06	26.7	0.0	2.0	2	0	0	2	2	2	2	Rieske-like	[2Fe-2S]	domain
DUF1264	PF06884.11	gi|300712878|ref|YP_003738690.1|	-	0.044	13.4	0.0	0.063	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1264)
MFS_1	PF07690.16	gi|300712879|ref|YP_003738691.1|	-	6.8e-45	153.5	53.1	8e-34	117.1	30.8	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|300712879|ref|YP_003738691.1|	-	3.9e-10	39.2	34.0	1.8e-09	37.0	11.6	2.5	2	1	1	3	3	3	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|300712879|ref|YP_003738691.1|	-	2.3e-09	36.6	24.6	2.5e-09	36.5	11.1	2.2	1	1	1	2	2	2	2	MFS_1	like	family
MFS_2	PF13347.6	gi|300712879|ref|YP_003738691.1|	-	1.1e-06	27.5	28.3	1.9e-06	26.7	13.3	2.2	1	1	1	2	2	2	2	MFS/sugar	transport	protein
OATP	PF03137.20	gi|300712879|ref|YP_003738691.1|	-	1.4	7.1	26.5	0.39	8.9	3.2	3.3	2	2	1	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Goodbye	PF17109.5	gi|300712879|ref|YP_003738691.1|	-	1.4	9.4	3.4	1.7	9.1	1.3	2.1	2	0	0	2	2	2	0	fungal	STAND	N-terminal	Goodbye	domain
adh_short_C2	PF13561.6	gi|300712880|ref|YP_003738692.1|	-	4.7e-47	160.5	0.1	6.2e-47	160.1	0.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|300712880|ref|YP_003738692.1|	-	6e-34	117.2	0.1	7.2e-34	117.0	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|300712880|ref|YP_003738692.1|	-	1.9e-06	27.9	0.1	2.6e-06	27.5	0.1	1.2	1	0	0	1	1	1	1	KR	domain
TrmB	PF01978.19	gi|300712882|ref|YP_003738694.1|	-	3.5e-07	30.0	0.1	7.1e-07	29.0	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|300712882|ref|YP_003738694.1|	-	1.2e-06	28.3	0.2	2.7e-06	27.2	0.2	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_IclR	PF09339.10	gi|300712882|ref|YP_003738694.1|	-	3.5e-06	26.7	0.1	7.7e-06	25.6	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|300712882|ref|YP_003738694.1|	-	1.4e-05	25.1	0.0	2.7e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|300712882|ref|YP_003738694.1|	-	1.5e-05	24.8	0.1	0.0016	18.4	0.1	2.3	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|300712882|ref|YP_003738694.1|	-	1.7e-05	24.3	0.1	3.5e-05	23.3	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|300712882|ref|YP_003738694.1|	-	0.0002	21.2	0.3	0.00054	19.8	0.3	1.7	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|300712882|ref|YP_003738694.1|	-	0.00028	20.7	0.0	0.001	19.0	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|300712882|ref|YP_003738694.1|	-	0.00029	20.6	0.2	0.00064	19.5	0.2	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|300712882|ref|YP_003738694.1|	-	0.0022	17.7	0.2	0.017	14.8	0.1	2.3	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_7	PF02796.15	gi|300712882|ref|YP_003738694.1|	-	0.0023	17.9	0.2	0.0057	16.7	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_28	PF13518.6	gi|300712882|ref|YP_003738694.1|	-	0.0027	17.8	0.4	0.0072	16.4	0.4	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_30	PF13556.6	gi|300712882|ref|YP_003738694.1|	-	0.0032	17.2	0.5	0.012	15.5	0.5	1.9	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
FUR	PF01475.19	gi|300712882|ref|YP_003738694.1|	-	0.0041	17.2	0.0	0.0081	16.3	0.0	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_23	PF13384.6	gi|300712882|ref|YP_003738694.1|	-	0.0088	15.8	0.3	0.018	14.9	0.3	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_5	PF01022.20	gi|300712882|ref|YP_003738694.1|	-	0.0094	15.8	0.0	0.025	14.4	0.0	1.7	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|300712882|ref|YP_003738694.1|	-	0.018	15.4	0.0	0.11	12.8	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_22	PF13309.6	gi|300712882|ref|YP_003738694.1|	-	0.059	13.5	0.1	0.13	12.4	0.1	1.6	1	0	0	1	1	1	0	HTH	domain
Mga	PF05043.13	gi|300712882|ref|YP_003738694.1|	-	0.06	13.9	0.0	0.2	12.2	0.0	1.8	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
HTH_36	PF13730.6	gi|300712882|ref|YP_003738694.1|	-	0.076	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|300712882|ref|YP_003738694.1|	-	0.11	12.3	0.0	1.2	9.0	0.1	2.3	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Spt4	PF06093.13	gi|300712883|ref|YP_003738695.1|	-	6e-08	32.7	0.8	7.3e-08	32.4	0.8	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
Cytochrom_c3_2	PF14537.6	gi|300712883|ref|YP_003738695.1|	-	0.0022	18.4	2.6	0.003	18.0	2.6	1.3	1	0	0	1	1	1	1	Cytochrome	c3
Prok-RING_4	PF14447.6	gi|300712883|ref|YP_003738695.1|	-	0.0051	16.6	1.3	0.0086	15.9	1.3	1.4	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	4
TackOD1	PF18551.1	gi|300712883|ref|YP_003738695.1|	-	0.0093	15.7	1.8	0.0093	15.7	1.8	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
zinc_ribbon_2	PF13240.6	gi|300712883|ref|YP_003738695.1|	-	0.013	15.2	0.7	0.021	14.5	0.7	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-RRN7	PF11781.8	gi|300712883|ref|YP_003738695.1|	-	0.015	15.0	3.6	0.45	10.2	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-ribbon_3	PF13248.6	gi|300712883|ref|YP_003738695.1|	-	0.026	13.9	1.3	0.026	13.9	1.3	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|300712883|ref|YP_003738695.1|	-	0.028	14.4	1.6	0.036	14.1	1.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.19	gi|300712883|ref|YP_003738695.1|	-	0.048	13.7	0.8	0.057	13.4	0.8	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|300712883|ref|YP_003738695.1|	-	0.09	12.3	1.0	0.64	9.6	0.1	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|300712883|ref|YP_003738695.1|	-	0.21	11.7	4.3	0.78	9.9	4.3	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIB	PF00382.19	gi|300712884|ref|YP_003738696.1|	-	8.4e-31	105.8	0.0	5.3e-15	55.2	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|300712884|ref|YP_003738696.1|	-	1.9e-17	62.4	2.1	4e-17	61.5	2.1	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|300712884|ref|YP_003738696.1|	-	0.0015	18.0	0.2	0.032	13.8	0.0	2.9	3	0	0	3	3	2	1	Sigma-70,	region	4
DZR	PF12773.7	gi|300712884|ref|YP_003738696.1|	-	0.002	18.1	0.5	0.0035	17.4	0.5	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RRN7	PF11781.8	gi|300712884|ref|YP_003738696.1|	-	0.0029	17.3	2.0	0.0051	16.5	2.0	1.4	1	0	0	1	1	1	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Cyclin_C	PF02984.19	gi|300712884|ref|YP_003738696.1|	-	0.0029	17.7	0.0	0.025	14.6	0.0	2.1	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|300712884|ref|YP_003738696.1|	-	0.0031	16.9	0.5	0.63	9.5	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Sigma70_r4_2	PF08281.12	gi|300712884|ref|YP_003738696.1|	-	0.012	15.3	0.0	0.032	13.9	0.0	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
Auto_anti-p27	PF06677.12	gi|300712884|ref|YP_003738696.1|	-	0.019	15.1	1.2	0.035	14.3	1.2	1.4	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn_Tnp_IS1595	PF12760.7	gi|300712884|ref|YP_003738696.1|	-	0.029	14.3	0.2	0.066	13.2	0.2	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|300712884|ref|YP_003738696.1|	-	0.038	13.9	1.0	0.076	13.0	1.0	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
MerR_1	PF13411.6	gi|300712884|ref|YP_003738696.1|	-	0.088	12.9	1.5	0.36	11.0	0.2	2.3	2	0	0	2	2	2	0	MerR	HTH	family	regulatory	protein
HTH_24	PF13412.6	gi|300712884|ref|YP_003738696.1|	-	0.09	12.4	0.0	0.19	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_3	PF01381.22	gi|300712884|ref|YP_003738696.1|	-	0.11	12.6	0.0	0.36	10.9	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix
HTH_AsnC-type	PF13404.6	gi|300712884|ref|YP_003738696.1|	-	0.12	12.2	0.0	0.35	10.7	0.0	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
zf-IS66	PF13005.7	gi|300712884|ref|YP_003738696.1|	-	0.2	12.1	3.3	3.2	8.2	0.2	3.1	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
A2L_zn_ribbon	PF08792.10	gi|300712884|ref|YP_003738696.1|	-	0.22	11.3	0.9	1	9.1	0.9	2.0	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|300712884|ref|YP_003738696.1|	-	0.65	10.2	5.2	0.92	9.7	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|300712884|ref|YP_003738696.1|	-	1.4	9.2	3.6	1.1	9.5	0.3	2.2	1	1	1	2	2	2	0	zinc-ribbon
Ferritin	PF00210.24	gi|300712885|ref|YP_003738697.1|	-	9.5e-22	77.5	0.5	1.1e-21	77.2	0.5	1.0	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|300712885|ref|YP_003738697.1|	-	5.8e-09	36.5	1.7	6.7e-09	36.3	1.7	1.0	1	0	0	1	1	1	1	Rubrerythrin
Ferritin_2	PF13668.6	gi|300712885|ref|YP_003738697.1|	-	0.00073	19.7	0.1	0.00098	19.3	0.1	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Caudo_TAP	PF02413.17	gi|300712885|ref|YP_003738697.1|	-	0.042	14.0	0.9	0.12	12.6	0.9	1.8	1	1	0	1	1	1	0	Caudovirales	tail	fibre	assembly	protein,	lambda	gpK
DUF892	PF05974.12	gi|300712885|ref|YP_003738697.1|	-	0.081	12.9	1.3	0.21	11.6	1.3	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
rve	PF00665.26	gi|300712887|ref|YP_003738699.1|	-	5.8e-15	55.5	0.2	3.5e-14	53.0	0.2	2.0	1	1	0	1	1	1	1	Integrase	core	domain
rve_3	PF13683.6	gi|300712887|ref|YP_003738699.1|	-	3.2e-10	39.6	0.1	0.0005	19.8	0.0	2.3	2	0	0	2	2	2	2	Integrase	core	domain
TFIIB	PF00382.19	gi|300712888|ref|YP_003738700.1|	-	8.3e-16	57.8	0.1	4.9e-13	48.9	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|300712888|ref|YP_003738700.1|	-	1.2e-06	27.9	3.5	2.5e-06	26.9	3.5	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
DUF3343	PF11823.8	gi|300712888|ref|YP_003738700.1|	-	0.019	14.4	0.1	0.036	13.5	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3343)
Cyclin_C	PF02984.19	gi|300712888|ref|YP_003738700.1|	-	0.022	14.8	0.0	0.11	12.6	0.0	1.9	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
OrfB_Zn_ribbon	PF07282.11	gi|300712888|ref|YP_003738700.1|	-	0.076	12.9	0.9	0.16	11.9	0.9	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF4396	PF14342.6	gi|300712889|ref|YP_003738701.1|	-	2.2e-31	109.1	4.6	2.2e-31	109.1	4.6	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4396)
Form_Nir_trans	PF01226.17	gi|300712890|ref|YP_003738702.1|	-	9.7e-40	136.4	19.6	1.1e-39	136.2	19.6	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
DUF3567	PF12091.8	gi|300712892|ref|YP_003738704.1|	-	0.0024	18.0	0.1	0.012	15.7	0.0	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3567)
DUF3071	PF11268.8	gi|300712892|ref|YP_003738704.1|	-	0.13	12.4	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
DJ-1_PfpI	PF01965.24	gi|300712893|ref|YP_003738705.1|	-	1.3e-47	161.7	0.3	1.4e-47	161.6	0.3	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
Catalase_C	PF18011.1	gi|300712893|ref|YP_003738705.1|	-	3.7e-05	23.4	0.2	8.4e-05	22.3	0.2	1.5	1	1	0	1	1	1	1	C-terminal	domain	found	in	long	catalases
GATase_3	PF07685.14	gi|300712893|ref|YP_003738705.1|	-	0.098	12.2	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Mn_catalase	PF05067.12	gi|300712894|ref|YP_003738706.1|	-	3.2e-08	32.9	0.0	3.4e-08	32.8	0.0	1.0	1	0	0	1	1	1	1	Manganese	containing	catalase
HflK_N	PF12221.8	gi|300712894|ref|YP_003738706.1|	-	0.047	13.7	1.9	0.059	13.4	1.9	1.3	1	1	0	1	1	1	0	Bacterial	membrane	protein	N	terminal
DUF5577	PF17740.1	gi|300712895|ref|YP_003738707.1|	-	0.15	11.7	0.0	0.2	11.3	0.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5577)
T2SSF	PF00482.23	gi|300712895|ref|YP_003738707.1|	-	0.22	11.5	2.7	0.76	9.7	0.0	2.9	3	0	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
TrkA_C	PF02080.21	gi|300712898|ref|YP_003738710.1|	-	7.7e-13	48.1	0.0	1.6e-12	47.0	0.0	1.5	1	0	0	1	1	1	1	TrkA-C	domain
Resolvase	PF00239.21	gi|300712899|ref|YP_003738711.1|	-	3.6e-35	121.2	1.2	5e-35	120.7	1.2	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
DDE_Tnp_1	PF01609.21	gi|300712900|ref|YP_003738712.1|	-	4.4e-08	33.0	1.6	3.8e-07	30.0	1.6	2.1	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|300712900|ref|YP_003738712.1|	-	9e-06	25.6	0.0	2.3e-05	24.3	0.0	1.6	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_4	PF13701.6	gi|300712900|ref|YP_003738712.1|	-	0.0016	16.8	0.7	0.083	11.1	0.0	2.7	3	0	0	3	3	3	2	Transposase	DDE	domain	group	1
FdsD	PF11390.8	gi|300712902|ref|YP_003738714.1|	-	0.029	14.7	0.0	0.038	14.3	0.0	1.2	1	0	0	1	1	1	0	NADH-dependant	formate	dehydrogenase	delta	subunit	FdsD
Phage_integrase	PF00589.22	gi|300712903|ref|YP_003738715.1|	-	0.00076	19.3	0.0	0.00091	19.1	0.0	1.1	1	0	0	1	1	1	1	Phage	integrase	family
AAA_31	PF13614.6	gi|300712906|ref|YP_003738718.1|	-	2.5e-28	99.2	0.0	3.5e-28	98.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|300712906|ref|YP_003738718.1|	-	8e-11	42.1	0.0	1.4e-10	41.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|300712906|ref|YP_003738718.1|	-	9.5e-08	31.8	0.3	6.1e-07	29.1	0.1	1.9	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|300712906|ref|YP_003738718.1|	-	1.7e-06	27.5	0.2	5e-05	22.7	0.3	2.4	2	1	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|300712906|ref|YP_003738718.1|	-	2.2e-06	27.4	0.0	3.8e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
ArsA_ATPase	PF02374.15	gi|300712906|ref|YP_003738718.1|	-	0.0002	20.6	0.0	0.0012	18.1	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
VirC1	PF07015.11	gi|300712906|ref|YP_003738718.1|	-	0.002	17.5	0.0	0.92	8.7	0.0	2.2	2	0	0	2	2	2	2	VirC1	protein
CLP1_P	PF16575.5	gi|300712906|ref|YP_003738718.1|	-	0.016	15.0	0.0	0.033	14.0	0.0	1.5	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
Fer4_NifH	PF00142.18	gi|300712906|ref|YP_003738718.1|	-	0.027	13.9	0.0	0.14	11.6	0.0	2.0	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
APS_kinase	PF01583.20	gi|300712906|ref|YP_003738718.1|	-	0.031	14.2	0.1	0.059	13.3	0.1	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Glyco_transf_4	PF13439.6	gi|300712906|ref|YP_003738718.1|	-	0.069	13.1	0.0	1	9.3	0.0	2.1	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
SRP54	PF00448.22	gi|300712906|ref|YP_003738718.1|	-	0.071	12.7	0.1	4.5	6.8	0.0	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MeaB	PF03308.16	gi|300712906|ref|YP_003738718.1|	-	0.18	10.8	0.1	5.8	5.8	0.0	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
HTH_20	PF12840.7	gi|300712907|ref|YP_003738719.1|	-	8.8e-11	41.7	0.0	1.8e-10	40.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|300712907|ref|YP_003738719.1|	-	1.6e-06	27.5	0.0	2.7e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|300712907|ref|YP_003738719.1|	-	0.00012	21.9	0.0	0.00026	20.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|300712907|ref|YP_003738719.1|	-	0.00018	21.3	0.0	0.00029	20.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
B-block_TFIIIC	PF04182.12	gi|300712907|ref|YP_003738719.1|	-	0.0012	18.9	0.0	0.0027	17.8	0.0	1.6	2	0	0	2	2	2	1	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.22	gi|300712907|ref|YP_003738719.1|	-	0.0012	18.7	0.0	0.0026	17.7	0.0	1.4	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|300712907|ref|YP_003738719.1|	-	0.002	18.0	0.0	0.0041	17.0	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_34	PF13601.6	gi|300712907|ref|YP_003738719.1|	-	0.0024	18.0	0.0	0.0036	17.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.10	gi|300712907|ref|YP_003738719.1|	-	0.013	15.3	0.0	0.027	14.3	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
BTG	PF07742.12	gi|300712907|ref|YP_003738719.1|	-	0.017	14.9	0.0	0.03	14.2	0.0	1.4	1	0	0	1	1	1	0	BTG	family
TrmB	PF01978.19	gi|300712907|ref|YP_003738719.1|	-	0.046	13.6	0.0	0.075	12.9	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|300712907|ref|YP_003738719.1|	-	0.091	13.3	0.0	0.19	12.2	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
RP-C	PF03428.13	gi|300712907|ref|YP_003738719.1|	-	0.13	11.9	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
PadR	PF03551.14	gi|300712907|ref|YP_003738719.1|	-	0.15	12.1	0.0	0.34	10.9	0.0	1.6	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
Cdc6_C	PF09079.11	gi|300712909|ref|YP_003738721.1|	-	3.4e-20	71.8	0.1	8.2e-20	70.6	0.1	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|300712909|ref|YP_003738721.1|	-	8.4e-11	42.3	0.0	1.9e-10	41.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|300712909|ref|YP_003738721.1|	-	5.4e-09	36.7	0.0	7e-08	33.0	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|300712909|ref|YP_003738721.1|	-	4.3e-07	30.4	0.0	9.4e-07	29.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|300712909|ref|YP_003738721.1|	-	0.00088	19.3	0.0	0.0014	18.6	0.0	1.3	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
NACHT	PF05729.12	gi|300712909|ref|YP_003738721.1|	-	0.001	19.0	0.0	0.0018	18.2	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
TniB	PF05621.11	gi|300712909|ref|YP_003738721.1|	-	0.0011	18.4	0.0	0.002	17.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
DUF815	PF05673.13	gi|300712909|ref|YP_003738721.1|	-	0.0018	17.5	0.0	0.0031	16.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_5	PF07728.14	gi|300712909|ref|YP_003738721.1|	-	0.0053	16.8	0.0	0.021	14.8	0.0	2.0	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|300712909|ref|YP_003738721.1|	-	0.016	15.6	0.0	0.03	14.7	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.6	gi|300712909|ref|YP_003738721.1|	-	0.017	15.7	0.0	0.044	14.3	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|300712909|ref|YP_003738721.1|	-	0.025	14.1	0.0	0.042	13.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_32	PF13654.6	gi|300712909|ref|YP_003738721.1|	-	0.028	13.2	0.2	1.9	7.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|300712909|ref|YP_003738721.1|	-	0.06	13.2	0.0	0.12	12.3	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
Sigma54_activat	PF00158.26	gi|300712909|ref|YP_003738721.1|	-	0.073	12.8	0.0	0.18	11.5	0.0	1.6	2	0	0	2	2	2	0	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|300712909|ref|YP_003738721.1|	-	0.1	11.7	0.0	0.15	11.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
TsaE	PF02367.17	gi|300712909|ref|YP_003738721.1|	-	0.14	12.2	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
POR	PF01558.18	gi|300712910|ref|YP_003738722.1|	-	0.11	12.6	0.1	0.11	12.5	0.1	1.1	1	0	0	1	1	1	0	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TRAM	PF01938.20	gi|300712911|ref|YP_003738723.1|	-	1.4e-10	41.0	0.1	1.4e-10	41.0	0.1	1.0	1	0	0	1	1	1	1	TRAM	domain
NHase_alpha	PF02979.16	gi|300712913|ref|YP_003738725.1|	-	0.12	11.6	0.0	0.14	11.5	0.0	1.1	1	0	0	1	1	1	0	Nitrile	hydratase,	alpha	chain
PadR	PF03551.14	gi|300712914|ref|YP_003738726.1|	-	1e-16	60.7	0.8	1.3e-16	60.3	0.8	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|300712914|ref|YP_003738726.1|	-	0.00028	21.3	0.0	0.00037	20.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|300712914|ref|YP_003738726.1|	-	0.0008	19.2	0.0	0.0011	18.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|300712914|ref|YP_003738726.1|	-	0.00084	19.3	0.1	0.0011	18.9	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|300712914|ref|YP_003738726.1|	-	0.0037	17.1	0.4	0.6	10.0	0.0	2.9	3	0	0	3	3	3	1	MarR	family
TrmB	PF01978.19	gi|300712914|ref|YP_003738726.1|	-	0.02	14.7	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF4364	PF14277.6	gi|300712914|ref|YP_003738726.1|	-	0.036	13.8	0.0	0.047	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DsbD_2	PF13386.6	gi|300712915|ref|YP_003738727.1|	-	2.5e-43	148.3	24.6	3.1e-43	148.1	24.6	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
E1-E2_ATPase	PF00122.20	gi|300712916|ref|YP_003738728.1|	-	2e-43	148.1	0.1	2e-43	148.1	0.1	2.7	4	0	0	4	4	4	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|300712916|ref|YP_003738728.1|	-	2.2e-30	106.5	3.1	4e-30	105.7	3.1	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|300712916|ref|YP_003738728.1|	-	1.2e-09	38.5	0.0	5.5e-09	36.3	0.0	2.1	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|300712916|ref|YP_003738728.1|	-	3e-05	23.9	0.0	5.1e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|300712916|ref|YP_003738728.1|	-	0.027	15.2	1.7	0.043	14.6	0.4	1.9	2	0	0	2	2	2	0	Putative	metal-binding	domain	of	cation	transport	ATPase
Laminin_II	PF06009.12	gi|300712918|ref|YP_003738730.1|	-	1	9.4	4.7	15	5.6	0.2	2.4	2	0	0	2	2	2	0	Laminin	Domain	II
FancD2	PF14631.6	gi|300712921|ref|YP_003738733.1|	-	0.11	9.9	0.0	0.12	9.8	0.0	1.0	1	0	0	1	1	1	0	Fanconi	anaemia	protein	FancD2	nuclease
HTH_20	PF12840.7	gi|300712922|ref|YP_003738734.1|	-	1.9e-07	31.0	0.1	2.6e-07	30.6	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|300712922|ref|YP_003738734.1|	-	6.8e-06	25.9	0.0	9.5e-06	25.4	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|300712922|ref|YP_003738734.1|	-	2.5e-05	23.7	0.0	3.6e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|300712922|ref|YP_003738734.1|	-	0.00012	22.0	0.0	0.00016	21.6	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|300712922|ref|YP_003738734.1|	-	0.00048	19.9	0.0	0.00063	19.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|300712922|ref|YP_003738734.1|	-	0.00058	19.6	0.8	0.00086	19.1	0.8	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|300712922|ref|YP_003738734.1|	-	0.0025	17.6	0.0	0.0037	17.0	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|300712922|ref|YP_003738734.1|	-	0.007	15.9	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|300712922|ref|YP_003738734.1|	-	0.011	15.5	0.2	0.016	15.0	0.2	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|300712922|ref|YP_003738734.1|	-	0.014	15.3	0.0	0.02	14.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|300712922|ref|YP_003738734.1|	-	0.024	14.6	0.0	0.027	14.4	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HxlR	PF01638.17	gi|300712922|ref|YP_003738734.1|	-	0.032	14.1	0.0	0.042	13.7	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_29	PF13551.6	gi|300712922|ref|YP_003738734.1|	-	0.05	13.6	0.0	0.062	13.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
AbiEi_4	PF13338.6	gi|300712922|ref|YP_003738734.1|	-	0.055	13.6	0.1	0.072	13.3	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_DeoR	PF08220.12	gi|300712922|ref|YP_003738734.1|	-	0.055	13.2	0.0	0.076	12.8	0.0	1.2	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|300712922|ref|YP_003738734.1|	-	0.058	13.4	0.0	0.074	13.0	0.0	1.2	1	0	0	1	1	1	0	Dimerisation	domain
Phage_AlpA	PF05930.12	gi|300712922|ref|YP_003738734.1|	-	0.07	13.0	0.0	0.31	10.9	0.0	1.9	1	1	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
HTH_7	PF02796.15	gi|300712922|ref|YP_003738734.1|	-	0.075	13.1	0.0	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
MarR	PF01047.22	gi|300712922|ref|YP_003738734.1|	-	0.075	13.0	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
EAP30	PF04157.16	gi|300712922|ref|YP_003738734.1|	-	0.084	12.1	0.0	0.096	12.0	0.0	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_30	PF13556.6	gi|300712922|ref|YP_003738734.1|	-	0.1	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
Fic	PF02661.18	gi|300712923|ref|YP_003738735.1|	-	1e-07	32.7	0.0	1.9e-07	31.9	0.0	1.5	1	0	0	1	1	1	1	Fic/DOC	family
HTH_23	PF13384.6	gi|300712926|ref|YP_003738738.1|	-	0.0031	17.3	0.0	0.0088	15.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|300712926|ref|YP_003738738.1|	-	0.0051	16.7	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|300712926|ref|YP_003738738.1|	-	0.0059	16.6	0.3	0.017	15.1	0.1	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
TrmB	PF01978.19	gi|300712926|ref|YP_003738738.1|	-	0.006	16.4	0.0	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|300712926|ref|YP_003738738.1|	-	0.013	15.6	0.1	0.039	14.1	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
VAPB_antitox	PF02697.14	gi|300712927|ref|YP_003738739.1|	-	5.2e-15	56.0	0.3	6.3e-15	55.7	0.3	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Unstab_antitox	PF09720.10	gi|300712927|ref|YP_003738739.1|	-	0.12	12.4	0.5	7.5	6.7	0.1	2.2	2	0	0	2	2	2	0	Putative	addiction	module	component
Trp_oprn_chp	PF09534.10	gi|300712927|ref|YP_003738739.1|	-	0.15	11.8	0.3	0.16	11.7	0.3	1.1	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
PIN	PF01850.21	gi|300712928|ref|YP_003738740.1|	-	0.0002	21.9	0.0	0.0002	21.9	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|300712928|ref|YP_003738740.1|	-	0.002	17.9	0.0	0.0022	17.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
XPG_I_2	PF12813.7	gi|300712928|ref|YP_003738740.1|	-	0.078	12.4	0.0	0.094	12.2	0.0	1.1	1	0	0	1	1	1	0	XPG	domain	containing
DUF4177	PF13783.6	gi|300712929|ref|YP_003738741.1|	-	4.4e-07	30.1	0.6	1.2e-06	28.8	0.6	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
PEP-CTERM	PF07589.11	gi|300712930|ref|YP_003738742.1|	-	4.5	7.5	5.3	12	6.1	5.3	1.8	1	1	0	1	1	1	0	PEP-CTERM	motif
MtrG	PF04210.13	gi|300712931|ref|YP_003738743.1|	-	2.5	8.0	9.1	7.4	6.5	1.3	2.2	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Romo1	PF10247.9	gi|300712931|ref|YP_003738743.1|	-	2.8	8.4	14.2	0.96	9.9	4.8	2.1	1	1	1	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
EcsB	PF05975.12	gi|300712932|ref|YP_003738744.1|	-	0.059	12.2	4.3	0.07	12.0	4.3	1.0	1	0	0	1	1	1	0	Bacterial	ABC	transporter	protein	EcsB
IncD	PF17628.2	gi|300712932|ref|YP_003738744.1|	-	0.4	10.5	5.2	0.54	10.0	4.1	1.8	1	1	0	1	1	1	0	Inclusion	membrane	protein	D
LemA	PF04011.12	gi|300712935|ref|YP_003738747.1|	-	0.013	15.4	0.1	0.015	15.2	0.1	1.1	1	0	0	1	1	1	0	LemA	family
Cytochrom_B562	PF07361.11	gi|300712935|ref|YP_003738747.1|	-	0.025	15.2	0.0	10	6.8	0.0	2.0	2	0	0	2	2	2	0	Cytochrome	b562
DUF2388	PF09498.10	gi|300712939|ref|YP_003738751.1|	-	0.06	13.3	0.6	0.21	11.6	0.6	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2388)
Pox_A_type_inc	PF04508.12	gi|300712940|ref|YP_003738752.1|	-	0.065	13.1	0.3	0.1	12.5	0.3	1.2	1	0	0	1	1	1	0	Viral	A-type	inclusion	protein	repeat
KfrA_N	PF11740.8	gi|300712941|ref|YP_003738753.1|	-	1.4	9.6	10.7	31	5.3	8.5	2.3	2	1	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
CREPT	PF16566.5	gi|300712942|ref|YP_003738754.1|	-	0.013	15.7	0.8	0.02	15.1	0.8	1.3	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
KELK	PF15796.5	gi|300712942|ref|YP_003738754.1|	-	0.024	15.1	1.6	0.05	14.1	1.4	1.7	1	1	0	1	1	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
HisK_N	PF09385.10	gi|300712942|ref|YP_003738754.1|	-	0.17	11.9	0.4	0.23	11.4	0.4	1.3	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
Not1	PF04054.15	gi|300712942|ref|YP_003738754.1|	-	0.22	10.4	0.2	0.27	10.1	0.2	1.0	1	0	0	1	1	1	0	CCR4-Not	complex	component,	Not1
Relaxase	PF03432.14	gi|300712943|ref|YP_003738755.1|	-	4.9e-05	23.1	6.2	6.1e-05	22.8	6.2	1.2	1	0	0	1	1	1	1	Relaxase/Mobilisation	nuclease	domain
MobL	PF18555.1	gi|300712943|ref|YP_003738755.1|	-	0.0014	18.0	0.4	0.0014	18.0	0.4	2.6	1	1	2	3	3	3	1	MobL	relaxases
TrwB_AAD_bind	PF10412.9	gi|300712944|ref|YP_003738756.1|	-	1.5e-15	57.1	0.1	2.8e-15	56.1	0.1	1.4	1	1	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF87	PF01935.17	gi|300712944|ref|YP_003738756.1|	-	3.6e-07	30.5	0.0	4.8e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|300712944|ref|YP_003738756.1|	-	0.0062	16.8	0.0	0.012	15.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|300712944|ref|YP_003738756.1|	-	0.035	14.5	0.1	0.12	12.8	0.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
Zeta_toxin	PF06414.12	gi|300712944|ref|YP_003738756.1|	-	0.084	12.1	0.0	0.21	10.8	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
DUF853	PF05872.12	gi|300712944|ref|YP_003738756.1|	-	0.098	11.2	0.0	0.14	10.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
S6PP	PF05116.13	gi|300712944|ref|YP_003738756.1|	-	0.11	12.0	0.0	0.22	11.0	0.0	1.4	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
FtsK_SpoIIIE	PF01580.18	gi|300712944|ref|YP_003738756.1|	-	0.12	11.7	0.0	1.1	8.6	0.0	2.4	2	1	1	3	3	3	0	FtsK/SpoIIIE	family
TraG-D_C	PF12696.7	gi|300712945|ref|YP_003738757.1|	-	6.8e-13	48.7	0.0	8.2e-13	48.4	0.0	1.1	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
TrwB_AAD_bind	PF10412.9	gi|300712945|ref|YP_003738757.1|	-	8.8e-11	41.3	0.0	9.9e-11	41.2	0.0	1.0	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.14	gi|300712945|ref|YP_003738757.1|	-	2.1e-07	30.1	0.0	2.1e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
HTH_20	PF12840.7	gi|300712947|ref|YP_003738759.1|	-	9.9e-06	25.5	0.2	1.5e-05	24.9	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|300712947|ref|YP_003738759.1|	-	4.5e-05	23.2	0.0	6.5e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|300712947|ref|YP_003738759.1|	-	0.00037	20.9	0.1	0.00051	20.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|300712947|ref|YP_003738759.1|	-	0.0019	17.7	0.2	0.0027	17.2	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Cdc6_C	PF09079.11	gi|300712947|ref|YP_003738759.1|	-	0.0034	17.3	0.0	0.0073	16.3	0.0	1.6	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
MarR_2	PF12802.7	gi|300712947|ref|YP_003738759.1|	-	0.0094	15.8	0.2	0.014	15.3	0.2	1.2	1	0	0	1	1	1	1	MarR	family
DUF3375	PF11855.8	gi|300712947|ref|YP_003738759.1|	-	0.026	13.5	2.2	0.031	13.2	2.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3375)
HTH_IclR	PF09339.10	gi|300712947|ref|YP_003738759.1|	-	0.035	13.9	0.0	0.059	13.2	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MutS_III	PF05192.18	gi|300712947|ref|YP_003738759.1|	-	0.049	13.8	0.1	0.055	13.7	0.1	1.0	1	0	0	1	1	1	0	MutS	domain	III
LexA_DNA_bind	PF01726.16	gi|300712947|ref|YP_003738759.1|	-	0.13	12.1	0.1	0.26	11.1	0.1	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF2250	PF10007.9	gi|300712947|ref|YP_003738759.1|	-	0.15	12.2	0.0	0.21	11.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF5392	PF17370.2	gi|300712948|ref|YP_003738760.1|	-	0.15	12.2	0.1	0.15	12.2	0.1	1.5	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5392)
DUF2207	PF09972.9	gi|300712948|ref|YP_003738760.1|	-	9.6	4.8	5.8	14	4.3	5.8	1.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
ParE_toxin	PF05016.15	gi|300712949|ref|YP_003738761.1|	-	1.2e-05	25.8	0.0	1.4e-05	25.6	0.0	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
DUF4476	PF14771.6	gi|300712950|ref|YP_003738762.1|	-	0.091	13.1	0.0	0.092	13.1	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4476)
ADH_N	PF08240.12	gi|300712951|ref|YP_003738763.1|	-	7.2e-29	99.9	0.1	1.4e-28	99.0	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|300712951|ref|YP_003738763.1|	-	6.2e-17	61.8	0.0	9.7e-13	48.2	0.0	2.3	1	1	1	2	2	2	2	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.6	gi|300712951|ref|YP_003738763.1|	-	0.0012	18.7	0.7	0.0012	18.7	0.7	2.4	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-associated
Methyltransf_25	PF13649.6	gi|300712951|ref|YP_003738763.1|	-	0.0062	17.2	0.0	0.01	16.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|300712951|ref|YP_003738763.1|	-	0.018	15.7	0.0	0.035	14.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
ADH_zinc_N_2	PF13602.6	gi|300712951|ref|YP_003738763.1|	-	0.037	15.1	0.0	0.11	13.6	0.0	1.9	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|300712951|ref|YP_003738763.1|	-	0.094	12.0	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
FancD2	PF14631.6	gi|300712952|ref|YP_003738764.1|	-	0.11	9.9	0.0	0.12	9.8	0.0	1.0	1	0	0	1	1	1	0	Fanconi	anaemia	protein	FancD2	nuclease
HTH_20	PF12840.7	gi|300712953|ref|YP_003738765.1|	-	1.9e-07	31.0	0.1	2.6e-07	30.6	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|300712953|ref|YP_003738765.1|	-	6.8e-06	25.9	0.0	9.5e-06	25.4	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|300712953|ref|YP_003738765.1|	-	2.5e-05	23.7	0.0	3.6e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|300712953|ref|YP_003738765.1|	-	0.00012	22.0	0.0	0.00016	21.6	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|300712953|ref|YP_003738765.1|	-	0.00048	19.9	0.0	0.00063	19.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|300712953|ref|YP_003738765.1|	-	0.00058	19.6	0.8	0.00086	19.1	0.8	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|300712953|ref|YP_003738765.1|	-	0.0025	17.6	0.0	0.0037	17.0	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_CodY	PF08222.11	gi|300712953|ref|YP_003738765.1|	-	0.007	15.9	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|300712953|ref|YP_003738765.1|	-	0.011	15.5	0.2	0.016	15.0	0.2	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|300712953|ref|YP_003738765.1|	-	0.014	15.3	0.0	0.02	14.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|300712953|ref|YP_003738765.1|	-	0.024	14.6	0.0	0.027	14.4	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HxlR	PF01638.17	gi|300712953|ref|YP_003738765.1|	-	0.032	14.1	0.0	0.042	13.7	0.0	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_29	PF13551.6	gi|300712953|ref|YP_003738765.1|	-	0.05	13.6	0.0	0.062	13.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
AbiEi_4	PF13338.6	gi|300712953|ref|YP_003738765.1|	-	0.055	13.6	0.1	0.072	13.3	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_DeoR	PF08220.12	gi|300712953|ref|YP_003738765.1|	-	0.055	13.2	0.0	0.076	12.8	0.0	1.2	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|300712953|ref|YP_003738765.1|	-	0.058	13.4	0.0	0.074	13.0	0.0	1.2	1	0	0	1	1	1	0	Dimerisation	domain
Phage_AlpA	PF05930.12	gi|300712953|ref|YP_003738765.1|	-	0.07	13.0	0.0	0.31	10.9	0.0	1.9	1	1	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
HTH_7	PF02796.15	gi|300712953|ref|YP_003738765.1|	-	0.075	13.1	0.0	0.21	11.7	0.0	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
MarR	PF01047.22	gi|300712953|ref|YP_003738765.1|	-	0.075	13.0	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	MarR	family
EAP30	PF04157.16	gi|300712953|ref|YP_003738765.1|	-	0.084	12.1	0.0	0.096	12.0	0.0	1.1	1	0	0	1	1	1	0	EAP30/Vps36	family
HTH_30	PF13556.6	gi|300712953|ref|YP_003738765.1|	-	0.1	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
Fic	PF02661.18	gi|300712954|ref|YP_003738766.1|	-	1e-07	32.7	0.0	1.9e-07	31.9	0.0	1.5	1	0	0	1	1	1	1	Fic/DOC	family
HTH_23	PF13384.6	gi|300712957|ref|YP_003738769.1|	-	0.0031	17.3	0.0	0.0088	15.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|300712957|ref|YP_003738769.1|	-	0.0051	16.7	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|300712957|ref|YP_003738769.1|	-	0.0059	16.6	0.3	0.017	15.1	0.1	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
TrmB	PF01978.19	gi|300712957|ref|YP_003738769.1|	-	0.006	16.4	0.0	0.015	15.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|300712957|ref|YP_003738769.1|	-	0.013	15.6	0.1	0.039	14.1	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
VAPB_antitox	PF02697.14	gi|300712958|ref|YP_003738770.1|	-	5.2e-15	56.0	0.3	6.3e-15	55.7	0.3	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Unstab_antitox	PF09720.10	gi|300712958|ref|YP_003738770.1|	-	0.12	12.4	0.5	7.5	6.7	0.1	2.2	2	0	0	2	2	2	0	Putative	addiction	module	component
Trp_oprn_chp	PF09534.10	gi|300712958|ref|YP_003738770.1|	-	0.15	11.8	0.3	0.16	11.7	0.3	1.1	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
PIN	PF01850.21	gi|300712959|ref|YP_003738771.1|	-	0.0002	21.9	0.0	0.0002	21.9	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
DUF5615	PF18480.1	gi|300712959|ref|YP_003738771.1|	-	0.002	17.9	0.0	0.0022	17.7	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5615)
XPG_I_2	PF12813.7	gi|300712959|ref|YP_003738771.1|	-	0.078	12.4	0.0	0.094	12.2	0.0	1.1	1	0	0	1	1	1	0	XPG	domain	containing
DUF4177	PF13783.6	gi|300712960|ref|YP_003738772.1|	-	4.4e-07	30.1	0.6	1.2e-06	28.8	0.6	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
PEP-CTERM	PF07589.11	gi|300712961|ref|YP_003738773.1|	-	4.5	7.5	5.3	12	6.1	5.3	1.8	1	1	0	1	1	1	0	PEP-CTERM	motif
MtrG	PF04210.13	gi|300712962|ref|YP_003738774.1|	-	2.5	8.0	9.1	7.4	6.5	1.3	2.2	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Romo1	PF10247.9	gi|300712962|ref|YP_003738774.1|	-	2.8	8.4	14.2	0.96	9.9	4.8	2.1	1	1	1	2	2	2	0	Reactive	mitochondrial	oxygen	species	modulator	1
EcsB	PF05975.12	gi|300712963|ref|YP_003738775.1|	-	0.059	12.2	4.3	0.07	12.0	4.3	1.0	1	0	0	1	1	1	0	Bacterial	ABC	transporter	protein	EcsB
IncD	PF17628.2	gi|300712963|ref|YP_003738775.1|	-	0.4	10.5	5.2	0.54	10.0	4.1	1.8	1	1	0	1	1	1	0	Inclusion	membrane	protein	D
LemA	PF04011.12	gi|300712966|ref|YP_003738778.1|	-	0.013	15.4	0.1	0.015	15.2	0.1	1.1	1	0	0	1	1	1	0	LemA	family
Cytochrom_B562	PF07361.11	gi|300712966|ref|YP_003738778.1|	-	0.025	15.2	0.0	10	6.8	0.0	2.0	2	0	0	2	2	2	0	Cytochrome	b562
DUF2388	PF09498.10	gi|300712970|ref|YP_003738782.1|	-	0.06	13.3	0.6	0.21	11.6	0.6	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2388)
Pox_A_type_inc	PF04508.12	gi|300712971|ref|YP_003738783.1|	-	0.065	13.1	0.3	0.1	12.5	0.3	1.2	1	0	0	1	1	1	0	Viral	A-type	inclusion	protein	repeat
KfrA_N	PF11740.8	gi|300712972|ref|YP_003738784.1|	-	1.4	9.6	10.7	31	5.3	8.5	2.3	2	1	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
CREPT	PF16566.5	gi|300712973|ref|YP_003738785.1|	-	0.013	15.7	0.8	0.02	15.1	0.8	1.3	1	0	0	1	1	1	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
KELK	PF15796.5	gi|300712973|ref|YP_003738785.1|	-	0.024	15.1	1.6	0.05	14.1	1.4	1.7	1	1	0	1	1	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
HisK_N	PF09385.10	gi|300712973|ref|YP_003738785.1|	-	0.17	11.9	0.4	0.23	11.4	0.4	1.3	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
Not1	PF04054.15	gi|300712973|ref|YP_003738785.1|	-	0.22	10.4	0.2	0.27	10.1	0.2	1.0	1	0	0	1	1	1	0	CCR4-Not	complex	component,	Not1
Relaxase	PF03432.14	gi|300712974|ref|YP_003738786.1|	-	4.9e-05	23.1	6.2	6.1e-05	22.8	6.2	1.2	1	0	0	1	1	1	1	Relaxase/Mobilisation	nuclease	domain
MobL	PF18555.1	gi|300712974|ref|YP_003738786.1|	-	0.0014	18.0	0.4	0.0014	18.0	0.4	2.6	1	1	2	3	3	3	1	MobL	relaxases
TrwB_AAD_bind	PF10412.9	gi|300712975|ref|YP_003738787.1|	-	1.5e-15	57.1	0.1	2.8e-15	56.1	0.1	1.4	1	1	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF87	PF01935.17	gi|300712975|ref|YP_003738787.1|	-	3.6e-07	30.5	0.0	4.8e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|300712975|ref|YP_003738787.1|	-	0.0062	16.8	0.0	0.012	15.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|300712975|ref|YP_003738787.1|	-	0.035	14.5	0.1	0.12	12.8	0.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
Zeta_toxin	PF06414.12	gi|300712975|ref|YP_003738787.1|	-	0.084	12.1	0.0	0.21	10.8	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
DUF853	PF05872.12	gi|300712975|ref|YP_003738787.1|	-	0.098	11.2	0.0	0.14	10.7	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
S6PP	PF05116.13	gi|300712975|ref|YP_003738787.1|	-	0.11	12.0	0.0	0.22	11.0	0.0	1.4	1	0	0	1	1	1	0	Sucrose-6F-phosphate	phosphohydrolase
FtsK_SpoIIIE	PF01580.18	gi|300712975|ref|YP_003738787.1|	-	0.12	11.7	0.0	1.1	8.6	0.0	2.4	2	1	1	3	3	3	0	FtsK/SpoIIIE	family
TraG-D_C	PF12696.7	gi|300712976|ref|YP_003738788.1|	-	6.8e-13	48.7	0.0	8.2e-13	48.4	0.0	1.1	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
TrwB_AAD_bind	PF10412.9	gi|300712976|ref|YP_003738788.1|	-	8.8e-11	41.3	0.0	9.9e-11	41.2	0.0	1.0	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.14	gi|300712976|ref|YP_003738788.1|	-	2.1e-07	30.1	0.0	2.1e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
HTH_20	PF12840.7	gi|300712978|ref|YP_003738790.1|	-	9.9e-06	25.5	0.2	1.5e-05	24.9	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|300712978|ref|YP_003738790.1|	-	4.5e-05	23.2	0.0	6.5e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|300712978|ref|YP_003738790.1|	-	0.00037	20.9	0.1	0.00051	20.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|300712978|ref|YP_003738790.1|	-	0.0019	17.7	0.2	0.0027	17.2	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Cdc6_C	PF09079.11	gi|300712978|ref|YP_003738790.1|	-	0.0034	17.3	0.0	0.0073	16.3	0.0	1.6	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
MarR_2	PF12802.7	gi|300712978|ref|YP_003738790.1|	-	0.0094	15.8	0.2	0.014	15.3	0.2	1.2	1	0	0	1	1	1	1	MarR	family
DUF3375	PF11855.8	gi|300712978|ref|YP_003738790.1|	-	0.026	13.5	2.2	0.031	13.2	2.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3375)
HTH_IclR	PF09339.10	gi|300712978|ref|YP_003738790.1|	-	0.035	13.9	0.0	0.059	13.2	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
MutS_III	PF05192.18	gi|300712978|ref|YP_003738790.1|	-	0.049	13.8	0.1	0.055	13.7	0.1	1.0	1	0	0	1	1	1	0	MutS	domain	III
LexA_DNA_bind	PF01726.16	gi|300712978|ref|YP_003738790.1|	-	0.13	12.1	0.1	0.26	11.1	0.1	1.6	1	0	0	1	1	1	0	LexA	DNA	binding	domain
DUF2250	PF10007.9	gi|300712978|ref|YP_003738790.1|	-	0.15	12.2	0.0	0.21	11.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF5392	PF17370.2	gi|300712979|ref|YP_003738791.1|	-	0.15	12.2	0.1	0.15	12.2	0.1	1.5	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5392)
DUF2207	PF09972.9	gi|300712979|ref|YP_003738791.1|	-	9.6	4.8	5.8	14	4.3	5.8	1.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
ParE_toxin	PF05016.15	gi|300712980|ref|YP_003738792.1|	-	1.2e-05	25.8	0.0	1.4e-05	25.6	0.0	1.1	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
DUF4476	PF14771.6	gi|300712981|ref|YP_003738793.1|	-	0.091	13.1	0.0	0.092	13.1	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4476)
ADH_N	PF08240.12	gi|300712982|ref|YP_003738794.1|	-	7.2e-29	99.9	0.1	1.4e-28	99.0	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|300712982|ref|YP_003738794.1|	-	6.2e-17	61.8	0.0	9.7e-13	48.2	0.0	2.3	1	1	1	2	2	2	2	Zinc-binding	dehydrogenase
ADH_N_assoc	PF13823.6	gi|300712982|ref|YP_003738794.1|	-	0.0012	18.7	0.7	0.0012	18.7	0.7	2.4	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-associated
Methyltransf_25	PF13649.6	gi|300712982|ref|YP_003738794.1|	-	0.0062	17.2	0.0	0.01	16.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|300712982|ref|YP_003738794.1|	-	0.018	15.7	0.0	0.035	14.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
ADH_zinc_N_2	PF13602.6	gi|300712982|ref|YP_003738794.1|	-	0.037	15.1	0.0	0.11	13.6	0.0	1.9	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|300712982|ref|YP_003738794.1|	-	0.094	12.0	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
V_ATPase_I	PF01496.19	gi|300712983|ref|YP_003738795.1|	-	0.0013	16.8	0.0	0.0014	16.7	0.0	1.0	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
GvpG	PF05120.12	gi|300712983|ref|YP_003738795.1|	-	0.0046	16.9	0.4	0.0067	16.4	0.4	1.3	1	0	0	1	1	1	1	Gas	vesicle	protein	G
SHOCT	PF09851.9	gi|300712983|ref|YP_003738795.1|	-	0.0072	16.0	0.1	0.012	15.4	0.1	1.4	1	0	0	1	1	1	1	Short	C-terminal	domain
EphA2_TM	PF14575.6	gi|300712983|ref|YP_003738795.1|	-	0.086	13.7	2.5	0.27	12.2	0.0	2.2	2	0	0	2	2	2	0	Ephrin	type-A	receptor	2	transmembrane	domain
Spore_III_AF	PF09581.10	gi|300712983|ref|YP_003738795.1|	-	0.13	12.3	3.9	1.9	8.4	0.0	2.1	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
Anoctamin	PF04547.12	gi|300712983|ref|YP_003738795.1|	-	0.14	11.0	3.2	0.15	10.8	3.0	1.3	1	1	0	1	1	1	0	Calcium-activated	chloride	channel
ABC2_membrane_3	PF12698.7	gi|300712983|ref|YP_003738795.1|	-	0.48	9.5	4.8	0.66	9.0	4.8	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF997	PF06196.12	gi|300712983|ref|YP_003738795.1|	-	1	9.4	7.5	0.13	12.3	2.9	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
Beta-lactamase	PF00144.24	gi|300712984|ref|YP_003738796.1|	-	8.9e-57	192.8	2.8	8.9e-57	192.8	2.8	1.5	2	0	0	2	2	2	1	Beta-lactamase
SH3_19	PF18597.1	gi|300712984|ref|YP_003738796.1|	-	0.1	12.5	0.4	7.9	6.4	0.2	2.5	2	0	0	2	2	2	0	Myosin	X	N-terminal	SH3	domain
HTH_3	PF01381.22	gi|300712985|ref|YP_003738797.1|	-	5e-12	45.7	0.0	5.5e-12	45.6	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|300712985|ref|YP_003738797.1|	-	5.6e-10	39.4	0.1	7e-10	39.1	0.1	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|300712985|ref|YP_003738797.1|	-	5.5e-05	23.1	0.0	6e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|300712985|ref|YP_003738797.1|	-	0.00065	20.1	0.0	0.0008	19.8	0.0	1.1	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_23	PF13384.6	gi|300712985|ref|YP_003738797.1|	-	0.0043	16.8	0.0	0.0057	16.4	0.0	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_25	PF13413.6	gi|300712985|ref|YP_003738797.1|	-	0.0052	16.6	0.2	0.0056	16.5	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|300712985|ref|YP_003738797.1|	-	0.0071	16.3	0.1	0.0099	15.8	0.1	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|300712985|ref|YP_003738797.1|	-	0.011	15.3	0.3	0.016	14.7	0.3	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
YdaS_antitoxin	PF15943.5	gi|300712985|ref|YP_003738797.1|	-	0.017	15.0	0.0	0.02	14.8	0.0	1.3	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_38	PF13936.6	gi|300712985|ref|YP_003738797.1|	-	0.022	14.5	0.1	0.034	13.9	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
KORA	PF16509.5	gi|300712985|ref|YP_003738797.1|	-	0.029	14.7	0.0	0.033	14.5	0.0	1.1	1	0	0	1	1	1	0	TrfB	plasmid	transcriptional	repressor
HTH_28	PF13518.6	gi|300712985|ref|YP_003738797.1|	-	0.057	13.5	0.2	0.086	13.0	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
CENP-B_N	PF04218.13	gi|300712985|ref|YP_003738797.1|	-	0.074	12.7	0.1	0.15	11.7	0.1	1.5	2	0	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
HTH_24	PF13412.6	gi|300712985|ref|YP_003738797.1|	-	0.089	12.4	0.1	0.13	11.8	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|300712985|ref|YP_003738797.1|	-	0.095	12.7	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2178	PF09946.9	gi|300712986|ref|YP_003738798.1|	-	0.0013	18.9	0.2	0.0028	17.8	0.2	1.6	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2178)
DUF373	PF04123.13	gi|300712986|ref|YP_003738798.1|	-	0.062	12.7	1.2	0.066	12.7	1.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
DUF2178	PF09946.9	gi|300712987|ref|YP_003738799.1|	-	8.8e-06	25.9	0.9	0.00016	21.8	0.0	2.2	2	0	0	2	2	2	1	Predicted	membrane	protein	(DUF2178)
TPD	PF14811.6	gi|300712987|ref|YP_003738799.1|	-	0.053	13.4	0.5	0.075	12.9	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	TPD	sequence-motif
60KD_IMP	PF02096.20	gi|300712987|ref|YP_003738799.1|	-	3.9	7.4	8.6	0.63	9.9	1.3	2.7	2	1	1	3	3	3	0	60Kd	inner	membrane	protein
Polysacc_deac_1	PF01522.21	gi|300712989|ref|YP_003738801.1|	-	1.1e-07	31.7	0.4	3.4e-06	27.0	0.2	2.6	3	0	0	3	3	3	1	Polysaccharide	deacetylase
HTH_24	PF13412.6	gi|300712992|ref|YP_003738804.1|	-	0.05	13.2	0.3	0.073	12.7	0.3	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF3549	PF12069.8	gi|300712992|ref|YP_003738804.1|	-	0.092	11.8	0.0	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3549)
RPA_C	PF08784.11	gi|300712992|ref|YP_003738804.1|	-	0.12	13.0	0.0	0.14	12.8	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF456	PF04306.13	gi|300712994|ref|YP_003738806.1|	-	0.0012	19.1	2.0	0.0015	18.8	2.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
CRPA	PF05745.11	gi|300712994|ref|YP_003738806.1|	-	0.006	16.6	2.4	0.006	16.6	2.4	1.0	1	0	0	1	1	1	1	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
DUF2892	PF11127.8	gi|300712994|ref|YP_003738806.1|	-	0.014	15.4	2.4	0.02	14.9	2.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
DUF5357	PF17310.2	gi|300712994|ref|YP_003738806.1|	-	0.15	10.6	0.7	0.15	10.6	0.7	1.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5357)
DUF3899	PF13038.6	gi|300712994|ref|YP_003738806.1|	-	0.2	12.2	2.4	13	6.3	0.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3899)
DUF3040	PF11239.8	gi|300712994|ref|YP_003738806.1|	-	2.5	8.4	6.1	8.3	6.8	6.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Gram_pos_anchor	PF00746.21	gi|300712994|ref|YP_003738806.1|	-	7.6	6.6	7.8	2.3	8.2	1.5	2.1	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
DUF4271	PF14093.6	gi|300712996|ref|YP_003738808.1|	-	9.5e-05	22.4	3.0	0.00013	22.0	3.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4271)
Oxidored_q3	PF00499.20	gi|300712996|ref|YP_003738808.1|	-	0.034	13.9	3.9	0.091	12.5	3.9	1.6	1	1	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
EMC3_TMCO1	PF01956.16	gi|300712997|ref|YP_003738809.1|	-	3.1e-29	101.9	0.1	4.1e-29	101.5	0.1	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
DUF3881	PF12997.7	gi|300712997|ref|YP_003738809.1|	-	0.26	10.5	0.1	0.36	10.0	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function,	E.	rectale	Gene	description	(DUF3881)
PetM	PF08041.11	gi|300712998|ref|YP_003738810.1|	-	0.75	9.4	6.8	0.3	10.7	1.3	2.4	2	0	0	2	2	2	0	PetM	family	of	cytochrome	b6f	complex	subunit	7
Oleosin	PF01277.17	gi|300712998|ref|YP_003738810.1|	-	3.4	7.4	8.3	1.1	9.1	3.3	2.0	2	0	0	2	2	2	0	Oleosin
DUF202	PF02656.15	gi|300712998|ref|YP_003738810.1|	-	5	7.6	6.7	5.7	7.5	0.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
HTH_11	PF08279.12	gi|300712999|ref|YP_003738811.1|	-	1.1e-06	28.4	0.0	2e-06	27.6	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|300712999|ref|YP_003738811.1|	-	5.4e-06	26.4	0.0	8.8e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|300712999|ref|YP_003738811.1|	-	0.0003	20.6	0.0	0.0005	19.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|300712999|ref|YP_003738811.1|	-	0.00087	19.1	0.0	0.0015	18.3	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|300712999|ref|YP_003738811.1|	-	0.0013	18.3	0.0	0.0039	16.7	0.0	1.9	1	1	1	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|300712999|ref|YP_003738811.1|	-	0.0046	16.8	0.0	0.02	14.7	0.0	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
FUR	PF01475.19	gi|300712999|ref|YP_003738811.1|	-	0.0066	16.6	0.0	0.0092	16.1	0.0	1.3	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_7	PF02796.15	gi|300712999|ref|YP_003738811.1|	-	0.0091	16.0	0.0	0.032	14.3	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_Crp_2	PF13545.6	gi|300712999|ref|YP_003738811.1|	-	0.014	15.4	0.1	0.029	14.3	0.0	1.6	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|300712999|ref|YP_003738811.1|	-	0.017	14.8	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
PadR	PF03551.14	gi|300712999|ref|YP_003738811.1|	-	0.03	14.3	0.0	0.058	13.4	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_IclR	PF09339.10	gi|300712999|ref|YP_003738811.1|	-	0.052	13.4	0.0	0.083	12.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.6	gi|300712999|ref|YP_003738811.1|	-	0.1	12.4	0.0	0.26	11.1	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_5	PF01022.20	gi|300712999|ref|YP_003738811.1|	-	0.15	11.9	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CPBP	PF02517.16	gi|300713001|ref|YP_003738813.1|	-	3.6e-09	36.9	3.5	3.6e-09	36.9	3.5	3.3	2	1	1	3	3	3	1	CPBP	intramembrane	metalloprotease
DUF3592	PF12158.8	gi|300713003|ref|YP_003738815.1|	-	1.2e-22	80.6	0.3	1.4e-22	80.4	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3592)
DUF1206	PF06724.11	gi|300713003|ref|YP_003738815.1|	-	0.0094	16.0	0.3	1.8	8.7	0.0	2.3	2	0	0	2	2	2	2	Domain	of	Unknown	Function	(DUF1206)
HTH_10	PF04967.12	gi|300713004|ref|YP_003738816.1|	-	7.6e-18	64.1	0.0	1.2e-17	63.4	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|300713004|ref|YP_003738816.1|	-	0.0014	18.1	0.1	0.0036	16.8	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.12	gi|300713004|ref|YP_003738816.1|	-	0.0021	17.7	0.0	0.0046	16.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|300713004|ref|YP_003738816.1|	-	0.0026	17.3	0.0	0.008	15.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|300713004|ref|YP_003738816.1|	-	0.07	13.0	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Abhydrolase_1	PF00561.20	gi|300713005|ref|YP_003738817.1|	-	9.2e-24	84.5	0.4	2.8e-22	79.6	0.4	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|300713005|ref|YP_003738817.1|	-	8.4e-21	75.6	3.4	1.1e-20	75.2	3.4	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|300713005|ref|YP_003738817.1|	-	6.7e-13	48.5	0.0	1e-12	47.8	0.0	1.3	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
DLH	PF01738.18	gi|300713005|ref|YP_003738817.1|	-	0.0035	16.9	0.0	0.82	9.2	0.0	2.7	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
Esterase	PF00756.20	gi|300713005|ref|YP_003738817.1|	-	0.01	15.5	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	0	Putative	esterase
Thioesterase	PF00975.20	gi|300713005|ref|YP_003738817.1|	-	0.15	12.2	0.0	0.2	11.7	0.0	1.2	1	0	0	1	1	1	0	Thioesterase	domain
Complex1_49kDa	PF00346.19	gi|300713006|ref|YP_003738818.1|	-	3.4e-82	275.6	0.0	1.6e-80	270.1	0.0	2.2	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|300713006|ref|YP_003738818.1|	-	9.1e-36	123.2	0.1	1.8e-35	122.2	0.1	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
PDDEXK_4	PF14281.6	gi|300713008|ref|YP_003738820.1|	-	7.9e-18	65.2	0.0	1.2e-17	64.7	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
G_glu_transpept	PF01019.21	gi|300713009|ref|YP_003738821.1|	-	1.6e-121	406.6	0.0	1.8e-121	406.4	0.0	1.0	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
Peptidase_M20	PF01546.28	gi|300713011|ref|YP_003738823.1|	-	1.4e-17	64.1	0.1	1.7e-17	63.8	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|300713011|ref|YP_003738823.1|	-	2.9e-10	40.0	0.0	9.5e-10	38.4	0.0	1.8	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
DUF2576	PF10845.8	gi|300713011|ref|YP_003738823.1|	-	0.1	12.2	0.1	0.55	9.9	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2576)
SBP_bac_8	PF13416.6	gi|300713012|ref|YP_003738824.1|	-	4.5e-17	62.8	0.0	6e-17	62.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|300713012|ref|YP_003738824.1|	-	1e-14	54.6	0.0	1.3e-14	54.3	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|300713012|ref|YP_003738824.1|	-	0.014	15.3	0.1	0.038	14.0	0.1	1.7	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|300713012|ref|YP_003738824.1|	-	0.081	12.7	0.0	0.12	12.0	0.0	1.3	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
ABC_tran	PF00005.27	gi|300713014|ref|YP_003738826.1|	-	4e-16	59.8	0.0	7.9e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|300713014|ref|YP_003738826.1|	-	1.9e-13	50.3	0.0	6e-13	48.8	0.0	1.9	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|300713014|ref|YP_003738826.1|	-	0.0036	17.2	0.0	0.0049	16.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SbcCD_C	PF13558.6	gi|300713014|ref|YP_003738826.1|	-	0.049	13.9	0.2	1.2	9.5	0.2	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Glyco_tranf_2_4	PF13704.6	gi|300713014|ref|YP_003738826.1|	-	0.11	13.1	0.0	0.27	11.7	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
TGT	PF01702.18	gi|300713014|ref|YP_003738826.1|	-	0.15	11.2	0.4	2.8	7.0	0.0	2.3	2	0	0	2	2	2	0	Queuine	tRNA-ribosyltransferase
BPD_transp_1	PF00528.22	gi|300713015|ref|YP_003738827.1|	-	5.1e-15	55.7	20.7	5.1e-15	55.7	20.7	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
RELT	PF12606.8	gi|300713015|ref|YP_003738827.1|	-	6.9	5.8	7.8	3.3	6.8	4.8	2.1	2	0	0	2	2	2	0	Tumour	necrosis	factor	receptor	superfamily	member	19
BPD_transp_1	PF00528.22	gi|300713016|ref|YP_003738828.1|	-	3.3e-19	69.3	26.6	6e-19	68.5	17.1	2.1	1	1	1	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3600	PF12207.8	gi|300713016|ref|YP_003738828.1|	-	0.048	13.6	0.0	0.072	13.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3600)
Peptidase_M20	PF01546.28	gi|300713017|ref|YP_003738829.1|	-	1.6e-35	122.7	0.7	2.6e-35	122.0	0.7	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|300713017|ref|YP_003738829.1|	-	2.4e-17	62.8	0.0	7.7e-17	61.2	0.0	1.9	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Peptidase_M42	PF05343.14	gi|300713017|ref|YP_003738829.1|	-	0.015	14.4	0.0	0.35	9.8	0.0	2.5	2	1	1	3	3	3	0	M42	glutamyl	aminopeptidase
Pyridox_ox_2	PF12900.7	gi|300713017|ref|YP_003738829.1|	-	0.049	13.6	0.1	0.16	11.9	0.0	1.9	2	0	0	2	2	2	0	Pyridoxamine	5'-phosphate	oxidase
Aminotran_3	PF00202.21	gi|300713018|ref|YP_003738830.1|	-	4.6e-99	331.8	0.0	5.8e-99	331.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|300713018|ref|YP_003738830.1|	-	0.085	12.0	0.0	0.12	11.5	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Peptidase_M20	PF01546.28	gi|300713019|ref|YP_003738831.1|	-	8.5e-28	97.5	1.4	1.3e-27	96.9	1.4	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|300713019|ref|YP_003738831.1|	-	4.2e-17	62.0	0.1	1.1e-16	60.7	0.1	1.8	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|300713019|ref|YP_003738831.1|	-	0.01	15.6	0.1	0.016	14.9	0.1	1.4	1	0	0	1	1	1	0	Peptidase	family	M28
Hist_deacetyl	PF00850.19	gi|300713020|ref|YP_003738832.1|	-	1.9e-75	254.2	0.0	2.4e-75	253.9	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
Pyridox_ox_2	PF12900.7	gi|300713021|ref|YP_003738833.1|	-	3.1e-22	79.1	0.0	3.7e-22	78.8	0.0	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
FMN_bind_2	PF04299.12	gi|300713021|ref|YP_003738833.1|	-	8.9e-06	25.5	0.0	1.5e-05	24.7	0.0	1.3	1	1	0	1	1	1	1	Putative	FMN-binding	domain
Putative_PNPOx	PF01243.20	gi|300713021|ref|YP_003738833.1|	-	0.0014	18.8	0.0	0.0021	18.2	0.0	1.4	1	1	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Creatininase	PF02633.14	gi|300713022|ref|YP_003738834.1|	-	4.6e-58	196.5	0.4	5.2e-58	196.4	0.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Peptidase_M20	PF01546.28	gi|300713023|ref|YP_003738835.1|	-	6.2e-31	107.7	0.0	8.7e-30	104.0	0.0	2.0	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|300713023|ref|YP_003738835.1|	-	4.4e-09	36.2	0.0	5.1e-08	32.8	0.0	2.4	1	1	0	1	1	1	1	Peptidase	dimerisation	domain
Cu_amine_oxid	PF01179.20	gi|300713024|ref|YP_003738836.1|	-	3.9e-151	503.6	0.1	5.1e-151	503.2	0.1	1.1	1	0	0	1	1	1	1	Copper	amine	oxidase,	enzyme	domain
Cu_amine_oxidN2	PF02727.16	gi|300713024|ref|YP_003738836.1|	-	1.7e-15	57.0	0.0	3.1e-15	56.2	0.0	1.4	1	0	0	1	1	1	1	Copper	amine	oxidase,	N2	domain
Cu_amine_oxidN3	PF02728.16	gi|300713024|ref|YP_003738836.1|	-	4.7e-13	49.4	0.0	1.5e-12	47.8	0.0	1.9	2	0	0	2	2	2	1	Copper	amine	oxidase,	N3	domain
Hydantoinase_A	PF01968.18	gi|300713025|ref|YP_003738837.1|	-	4.9e-96	321.4	2.3	2.9e-95	318.9	0.1	2.1	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|300713025|ref|YP_003738837.1|	-	8.3e-54	182.0	3.4	2.8e-52	177.0	0.3	2.9	3	1	0	3	3	3	2	Hydantoinase/oxoprolinase	N-terminal	region
ROK	PF00480.20	gi|300713025|ref|YP_003738837.1|	-	0.0069	15.9	0.7	0.028	13.9	0.3	2.1	2	0	0	2	2	2	1	ROK	family
BcrAD_BadFG	PF01869.20	gi|300713025|ref|YP_003738837.1|	-	0.022	14.3	0.1	0.36	10.3	0.0	2.2	2	0	0	2	2	2	0	BadF/BadG/BcrA/BcrD	ATPase	family
Hydantoinase_B	PF02538.14	gi|300713026|ref|YP_003738838.1|	-	2.9e-177	590.2	0.0	3.3e-177	590.0	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
MMACHC	PF16690.5	gi|300713026|ref|YP_003738838.1|	-	0.071	12.8	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Methylmalonic	aciduria	and	homocystinuria	type	C	family
Amidase	PF01425.21	gi|300713028|ref|YP_003738840.1|	-	3.3e-06	26.3	0.0	3.6e-06	26.2	0.0	1.0	1	0	0	1	1	1	1	Amidase
zf-C2HC_2	PF13913.6	gi|300713030|ref|YP_003738842.1|	-	0.034	14.0	0.2	0.034	14.0	0.2	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
SPATIAL	PF15256.6	gi|300713030|ref|YP_003738842.1|	-	0.039	14.3	0.2	0.059	13.7	0.2	1.2	1	0	0	1	1	1	0	SPATIAL
zf_C2HC_14	PF18574.1	gi|300713030|ref|YP_003738842.1|	-	0.058	13.2	0.1	0.058	13.2	0.1	2.6	4	0	0	4	4	4	0	C2HC	Zing	finger	domain
DUF1610	PF07754.11	gi|300713030|ref|YP_003738842.1|	-	0.41	10.6	6.3	0.69	9.9	0.1	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
Filament	PF00038.21	gi|300713031|ref|YP_003738843.1|	-	8.8e-05	22.2	4.2	0.00015	21.4	4.2	1.4	1	0	0	1	1	1	1	Intermediate	filament	protein
Prefoldin_2	PF01920.20	gi|300713031|ref|YP_003738843.1|	-	0.00011	22.1	4.1	0.18	11.8	3.0	2.7	2	0	0	2	2	2	1	Prefoldin	subunit
MPS2	PF17060.5	gi|300713031|ref|YP_003738843.1|	-	0.00059	19.2	1.1	0.00059	19.2	1.1	1.8	2	0	0	2	2	2	1	Monopolar	spindle	protein	2
HSBP1	PF06825.12	gi|300713031|ref|YP_003738843.1|	-	0.0027	17.5	2.0	5	7.1	0.0	3.3	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
IFT57	PF10498.9	gi|300713031|ref|YP_003738843.1|	-	0.0033	16.5	2.6	0.0056	15.7	2.6	1.4	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
ABC_tran_CTD	PF16326.5	gi|300713031|ref|YP_003738843.1|	-	0.0034	17.6	13.7	0.23	11.7	6.0	3.0	1	1	2	3	3	3	3	ABC	transporter	C-terminal	domain
DUF1664	PF07889.12	gi|300713031|ref|YP_003738843.1|	-	0.0037	17.3	2.2	0.0058	16.7	0.4	2.0	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1664)
Fmp27_WPPW	PF10359.9	gi|300713031|ref|YP_003738843.1|	-	0.0038	16.2	3.1	0.0054	15.6	3.1	1.2	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
NPV_P10	PF05531.12	gi|300713031|ref|YP_003738843.1|	-	0.004	17.6	0.7	0.6	10.6	0.1	2.7	2	0	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
PKcGMP_CC	PF16808.5	gi|300713031|ref|YP_003738843.1|	-	0.0041	16.9	7.2	0.024	14.5	3.1	2.6	2	0	0	2	2	2	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
HOOK	PF05622.12	gi|300713031|ref|YP_003738843.1|	-	0.0044	15.2	5.6	0.0051	15.0	5.6	1.2	1	0	0	1	1	1	1	HOOK	protein
AAA_13	PF13166.6	gi|300713031|ref|YP_003738843.1|	-	0.0048	15.6	11.0	0.08	11.6	1.5	2.0	1	1	1	2	2	2	2	AAA	domain
CLZ	PF16526.5	gi|300713031|ref|YP_003738843.1|	-	0.0053	17.1	6.1	0.52	10.7	2.4	2.8	2	0	0	2	2	2	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
SHE3	PF17078.5	gi|300713031|ref|YP_003738843.1|	-	0.0058	16.4	6.7	0.11	12.2	2.6	2.3	1	1	0	2	2	2	1	SWI5-dependent	HO	expression	protein	3
SKA1	PF07160.12	gi|300713031|ref|YP_003738843.1|	-	0.0075	16.2	7.4	0.052	13.4	7.3	2.1	1	1	0	1	1	1	1	Spindle	and	kinetochore-associated	protein	1
TPR_MLP1_2	PF07926.12	gi|300713031|ref|YP_003738843.1|	-	0.0084	16.2	4.5	0.0084	16.2	4.5	2.2	2	2	0	2	2	1	1	TPR/MLP1/MLP2-like	protein
GAS	PF13851.6	gi|300713031|ref|YP_003738843.1|	-	0.01	15.2	3.2	0.017	14.5	3.0	1.5	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF5082	PF16888.5	gi|300713031|ref|YP_003738843.1|	-	0.012	15.9	4.6	0.083	13.2	0.1	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF5082)
UPF0242	PF06785.11	gi|300713031|ref|YP_003738843.1|	-	0.013	15.6	6.5	0.02	15.0	6.5	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Lebercilin	PF15619.6	gi|300713031|ref|YP_003738843.1|	-	0.013	15.2	6.9	0.018	14.7	2.9	2.3	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
FAM76	PF16046.5	gi|300713031|ref|YP_003738843.1|	-	0.02	14.3	1.2	0.02	14.3	1.2	1.6	1	1	1	2	2	2	0	FAM76	protein
FlaC_arch	PF05377.11	gi|300713031|ref|YP_003738843.1|	-	0.021	15.2	6.7	0.47	10.9	0.8	3.2	1	1	2	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
YPEB	PF14620.6	gi|300713031|ref|YP_003738843.1|	-	0.023	14.1	5.8	0.049	13.0	5.8	1.6	1	1	0	1	1	1	0	YpeB	sporulation
Spc7	PF08317.11	gi|300713031|ref|YP_003738843.1|	-	0.023	13.6	9.0	0.039	12.8	8.0	1.7	1	1	0	1	1	1	0	Spc7	kinetochore	protein
KELK	PF15796.5	gi|300713031|ref|YP_003738843.1|	-	0.025	15.0	3.6	0.025	15.0	3.6	1.9	2	0	0	2	2	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
DUF4763	PF15960.5	gi|300713031|ref|YP_003738843.1|	-	0.026	13.9	6.5	0.032	13.6	5.3	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4763)
HalX	PF08663.10	gi|300713031|ref|YP_003738843.1|	-	0.036	14.4	11.2	0.59	10.5	2.0	3.0	1	1	1	2	2	2	0	HalX	domain
Occludin_ELL	PF07303.13	gi|300713031|ref|YP_003738843.1|	-	0.037	14.7	4.7	8.2	7.2	0.5	3.2	2	1	1	3	3	3	0	Occludin	homology	domain
Snapin_Pallidin	PF14712.6	gi|300713031|ref|YP_003738843.1|	-	0.039	14.4	3.8	0.079	13.4	2.0	2.4	1	1	2	3	3	2	0	Snapin/Pallidin
Prefoldin	PF02996.17	gi|300713031|ref|YP_003738843.1|	-	0.042	13.8	6.1	0.29	11.1	1.9	2.6	2	0	0	2	2	2	0	Prefoldin	subunit
BLOC1_2	PF10046.9	gi|300713031|ref|YP_003738843.1|	-	0.046	14.0	7.4	0.19	12.0	5.0	2.7	2	1	1	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Med9	PF07544.13	gi|300713031|ref|YP_003738843.1|	-	0.053	13.6	2.3	0.64	10.1	1.1	2.4	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
End3	PF12761.7	gi|300713031|ref|YP_003738843.1|	-	0.058	13.6	6.2	0.4	10.8	0.8	2.7	1	1	1	2	2	2	0	Actin	cytoskeleton-regulatory	complex	protein	END3
DUF3349	PF11829.8	gi|300713031|ref|YP_003738843.1|	-	0.065	14.0	3.0	0.16	12.7	0.1	2.7	1	1	2	3	3	2	0	Protein	of	unknown	function	(DUF3349)
FapA	PF03961.13	gi|300713031|ref|YP_003738843.1|	-	0.065	11.8	4.2	0.044	12.4	1.8	1.7	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
Spectrin	PF00435.21	gi|300713031|ref|YP_003738843.1|	-	0.072	13.6	6.6	0.04	14.4	3.5	2.1	2	1	0	2	2	1	0	Spectrin	repeat
COG2	PF06148.11	gi|300713031|ref|YP_003738843.1|	-	0.088	12.9	4.5	2.8	8.0	0.9	2.9	1	1	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RPW8	PF05659.11	gi|300713031|ref|YP_003738843.1|	-	0.097	12.4	2.0	0.29	10.8	0.4	2.2	2	0	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Laminin_II	PF06009.12	gi|300713031|ref|YP_003738843.1|	-	0.11	12.6	3.7	0.12	12.4	1.9	1.9	1	1	1	2	2	2	0	Laminin	Domain	II
DUF2802	PF10975.8	gi|300713031|ref|YP_003738843.1|	-	0.11	12.7	1.9	13	6.0	0.2	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
Baculo_PEP_C	PF04513.12	gi|300713031|ref|YP_003738843.1|	-	0.12	12.5	3.9	0.31	11.1	3.9	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Allexi_40kDa	PF05549.11	gi|300713031|ref|YP_003738843.1|	-	0.12	11.8	3.7	1.9	7.9	0.4	2.1	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
CSN5_C	PF18323.1	gi|300713031|ref|YP_003738843.1|	-	0.13	13.2	2.3	1.2	10.0	0.4	2.8	1	1	1	2	2	2	0	Cop9	signalosome	subunit	5	C-terminal	domain
DUF4201	PF13870.6	gi|300713031|ref|YP_003738843.1|	-	0.13	11.9	5.0	0.46	10.2	1.9	2.4	2	1	0	2	2	1	0	Domain	of	unknown	function	(DUF4201)
FPP	PF05911.11	gi|300713031|ref|YP_003738843.1|	-	0.14	10.3	8.8	0.042	12.1	5.0	1.9	2	0	0	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
Golgin_A5	PF09787.9	gi|300713031|ref|YP_003738843.1|	-	0.15	11.5	9.1	0.25	10.8	8.6	1.6	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
ADIP	PF11559.8	gi|300713031|ref|YP_003738843.1|	-	0.18	11.9	7.6	0.13	12.4	5.1	2.0	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
YojJ	PF10372.9	gi|300713031|ref|YP_003738843.1|	-	0.18	11.9	0.6	6.7	6.9	0.2	2.3	1	1	1	2	2	2	0	Bacterial	membrane-spanning	protein	N-terminus
TMPIT	PF07851.13	gi|300713031|ref|YP_003738843.1|	-	0.18	11.0	1.8	0.2	10.9	0.9	1.5	1	1	0	1	1	1	0	TMPIT-like	protein
Spore_III_AB	PF09548.10	gi|300713031|ref|YP_003738843.1|	-	0.19	11.8	3.1	0.72	9.9	2.4	2.0	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
DUF4795	PF16043.5	gi|300713031|ref|YP_003738843.1|	-	0.19	11.3	4.3	0.61	9.7	1.2	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4795)
Fez1	PF06818.15	gi|300713031|ref|YP_003738843.1|	-	0.19	12.1	9.7	0.34	11.3	9.7	1.6	1	1	0	1	1	1	0	Fez1
DivIC	PF04977.15	gi|300713031|ref|YP_003738843.1|	-	0.21	11.4	7.7	0.41	10.4	2.8	2.5	1	1	1	2	2	2	0	Septum	formation	initiator
NapD	PF03927.13	gi|300713031|ref|YP_003738843.1|	-	0.22	11.6	3.2	0.6	10.2	0.0	2.9	3	0	0	3	3	2	0	NapD	protein
Swi5	PF07061.11	gi|300713031|ref|YP_003738843.1|	-	0.22	11.6	4.3	7.1	6.8	1.0	2.7	2	0	0	2	2	2	0	Swi5
DUF4140	PF13600.6	gi|300713031|ref|YP_003738843.1|	-	0.24	11.9	11.2	0.34	11.4	4.3	2.6	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
HMMR_N	PF15905.5	gi|300713031|ref|YP_003738843.1|	-	0.25	10.8	11.5	0.044	13.3	7.7	1.6	1	1	0	2	2	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF641	PF04859.12	gi|300713031|ref|YP_003738843.1|	-	0.25	11.7	4.5	0.15	12.4	2.0	1.9	1	1	1	2	2	1	0	Plant	protein	of	unknown	function	(DUF641)
PspA_IM30	PF04012.12	gi|300713031|ref|YP_003738843.1|	-	0.26	10.8	13.5	0.76	9.3	2.2	3.0	2	1	1	3	3	3	0	PspA/IM30	family
DUF2730	PF10805.8	gi|300713031|ref|YP_003738843.1|	-	0.27	11.4	3.0	4.4	7.5	1.9	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
CC2-LZ	PF16516.5	gi|300713031|ref|YP_003738843.1|	-	0.27	11.6	5.4	0.56	10.6	2.5	2.4	1	1	1	2	2	2	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
ACCA	PF03255.14	gi|300713031|ref|YP_003738843.1|	-	0.29	11.0	4.1	0.22	11.4	0.3	2.4	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF724	PF05266.14	gi|300713031|ref|YP_003738843.1|	-	0.3	10.9	3.6	0.26	11.1	1.9	1.8	1	1	0	2	2	1	0	Protein	of	unknown	function	(DUF724)
pRN1_helical	PF13010.6	gi|300713031|ref|YP_003738843.1|	-	0.3	11.0	1.9	0.4	10.6	0.1	2.0	2	0	0	2	2	1	0	Primase	helical	domain
Muted	PF14942.6	gi|300713031|ref|YP_003738843.1|	-	0.32	11.3	8.5	0.077	13.3	3.5	2.3	2	1	1	3	3	3	0	Organelle	biogenesis,	Muted-like	protein
SlyX	PF04102.12	gi|300713031|ref|YP_003738843.1|	-	0.33	11.6	11.1	0.63	10.7	6.8	3.2	2	1	0	2	2	2	0	SlyX
CENP-F_leu_zip	PF10473.9	gi|300713031|ref|YP_003738843.1|	-	0.33	11.0	12.9	3.2	7.8	9.4	2.9	1	1	2	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Not3	PF04065.15	gi|300713031|ref|YP_003738843.1|	-	0.34	10.3	8.3	0.38	10.1	1.2	2.5	1	1	2	3	3	3	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
Tmemb_cc2	PF10267.9	gi|300713031|ref|YP_003738843.1|	-	0.37	9.9	7.7	0.12	11.6	4.8	1.6	1	1	1	2	2	2	0	Predicted	transmembrane	and	coiled-coil	2	protein
Jnk-SapK_ap_N	PF09744.9	gi|300713031|ref|YP_003738843.1|	-	0.4	10.9	11.0	0.26	11.5	9.0	1.8	2	0	0	2	2	1	0	JNK_SAPK-associated	protein-1
Cnn_1N	PF07989.11	gi|300713031|ref|YP_003738843.1|	-	0.43	10.8	5.1	1.3	9.2	1.8	2.6	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
CASP_C	PF08172.12	gi|300713031|ref|YP_003738843.1|	-	0.46	9.8	8.6	0.25	10.6	1.2	2.3	1	1	1	2	2	2	0	CASP	C	terminal
JIP_LZII	PF16471.5	gi|300713031|ref|YP_003738843.1|	-	0.48	10.6	6.5	6.4	7.0	3.9	2.5	1	1	2	3	3	3	0	JNK-interacting	protein	leucine	zipper	II
TMF_DNA_bd	PF12329.8	gi|300713031|ref|YP_003738843.1|	-	0.48	10.5	7.1	0.56	10.2	4.0	2.5	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Nup54	PF13874.6	gi|300713031|ref|YP_003738843.1|	-	0.5	10.5	7.2	4.4	7.4	0.8	2.9	2	1	0	2	2	2	0	Nucleoporin	complex	subunit	54
Cep57_MT_bd	PF06657.13	gi|300713031|ref|YP_003738843.1|	-	0.52	10.8	4.1	1.5	9.3	2.0	2.4	1	1	1	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
V_ATPase_I	PF01496.19	gi|300713031|ref|YP_003738843.1|	-	0.54	8.1	3.8	0.63	7.9	3.8	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FlxA	PF14282.6	gi|300713031|ref|YP_003738843.1|	-	0.58	10.2	8.2	7.4	6.6	6.2	2.6	2	1	0	2	2	1	0	FlxA-like	protein
Pox_A_type_inc	PF04508.12	gi|300713031|ref|YP_003738843.1|	-	0.63	10.0	9.2	0.29	11.1	1.6	3.2	2	2	1	3	3	2	0	Viral	A-type	inclusion	protein	repeat
ISG65-75	PF11727.8	gi|300713031|ref|YP_003738843.1|	-	0.8	8.9	5.0	0.75	9.0	4.3	1.5	1	1	0	1	1	1	0	Invariant	surface	glycoprotein
DUF3552	PF12072.8	gi|300713031|ref|YP_003738843.1|	-	0.82	9.1	10.4	2.7	7.4	10.5	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Fib_alpha	PF08702.10	gi|300713031|ref|YP_003738843.1|	-	0.9	9.7	4.7	1	9.5	1.9	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
OmpH	PF03938.14	gi|300713031|ref|YP_003738843.1|	-	0.9	9.9	9.1	5.6	7.3	8.5	2.2	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
DUF4407	PF14362.6	gi|300713031|ref|YP_003738843.1|	-	1	8.6	11.2	1.8	7.8	11.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
IFP_35_N	PF07334.13	gi|300713031|ref|YP_003738843.1|	-	1.3	9.1	10.0	10	6.3	0.1	3.1	2	1	1	3	3	3	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
Seryl_tRNA_N	PF02403.22	gi|300713031|ref|YP_003738843.1|	-	1.4	9.2	9.1	0.8	10.0	4.6	2.5	2	1	0	2	2	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF16	PF01519.16	gi|300713031|ref|YP_003738843.1|	-	1.4	9.4	6.7	3.1	8.3	0.6	2.7	1	1	2	3	3	2	0	Protein	of	unknown	function	DUF16
DUF2203	PF09969.9	gi|300713031|ref|YP_003738843.1|	-	1.5	9.6	6.6	0.61	10.8	2.7	2.2	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Cep57_CLD	PF14073.6	gi|300713031|ref|YP_003738843.1|	-	1.6	8.7	9.5	2.7	8.0	4.5	2.5	1	1	0	2	2	2	0	Centrosome	localisation	domain	of	Cep57
Ima1_N	PF09779.9	gi|300713031|ref|YP_003738843.1|	-	1.7	9.5	5.9	31	5.4	0.9	2.9	1	1	1	2	2	2	0	Ima1	N-terminal	domain
MscS_porin	PF12795.7	gi|300713031|ref|YP_003738843.1|	-	1.9	8.0	17.3	3.9	7.0	14.3	2.4	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
DUF812	PF05667.11	gi|300713031|ref|YP_003738843.1|	-	2	7.2	15.3	0.23	10.3	4.3	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
Matrilin_ccoil	PF10393.9	gi|300713031|ref|YP_003738843.1|	-	2	8.3	7.4	0.86	9.5	0.3	2.8	3	0	0	3	3	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
Uds1	PF15456.6	gi|300713031|ref|YP_003738843.1|	-	2	8.6	8.7	0.23	11.7	2.5	2.4	2	1	1	3	3	2	0	Up-regulated	During	Septation
GrpE	PF01025.19	gi|300713031|ref|YP_003738843.1|	-	2	8.0	9.8	9.1	5.9	9.8	2.3	1	1	0	1	1	1	0	GrpE
Spc24	PF08286.11	gi|300713031|ref|YP_003738843.1|	-	2.2	8.6	13.5	0.54	10.5	3.2	2.7	2	1	1	3	3	2	0	Spc24	subunit	of	Ndc80
DUF948	PF06103.11	gi|300713031|ref|YP_003738843.1|	-	2.6	8.4	10.3	4.8	7.5	0.2	3.1	1	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF5446	PF17522.2	gi|300713031|ref|YP_003738843.1|	-	2.8	8.2	12.7	1.3	9.2	3.2	2.8	3	0	0	3	3	2	0	Family	of	unknown	function	(DUF5446)
TMF_TATA_bd	PF12325.8	gi|300713031|ref|YP_003738843.1|	-	3.3	8.0	11.5	0.86	9.8	5.0	2.6	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Tropomyosin_1	PF12718.7	gi|300713031|ref|YP_003738843.1|	-	3.8	7.6	19.1	2.6	8.2	7.0	2.4	2	1	1	3	3	2	0	Tropomyosin	like
AAA_23	PF13476.6	gi|300713031|ref|YP_003738843.1|	-	4.6	7.7	8.1	2.3	8.6	5.9	1.7	1	1	1	2	2	2	0	AAA	domain
PhoU	PF01895.19	gi|300713031|ref|YP_003738843.1|	-	4.8	7.7	8.2	8.8	6.9	4.9	2.9	2	1	0	2	2	2	0	PhoU	domain
BST2	PF16716.5	gi|300713031|ref|YP_003738843.1|	-	5.9	7.5	9.4	9.4	6.9	2.4	2.8	2	1	1	3	3	2	0	Bone	marrow	stromal	antigen	2
MerR-DNA-bind	PF09278.11	gi|300713031|ref|YP_003738843.1|	-	6.2	7.4	7.6	46	4.7	0.1	3.2	2	1	0	2	2	2	0	MerR,	DNA	binding
YabA	PF06156.13	gi|300713031|ref|YP_003738843.1|	-	6.7	7.4	7.5	24	5.6	1.4	2.5	1	1	1	2	2	2	0	Initiation	control	protein	YabA
XhlA	PF10779.9	gi|300713031|ref|YP_003738843.1|	-	7.5	6.8	9.6	2	8.7	2.2	2.9	3	0	0	3	3	2	0	Haemolysin	XhlA
PspB	PF06667.12	gi|300713031|ref|YP_003738843.1|	-	7.8	6.6	5.6	3.4	7.8	1.4	2.5	2	1	1	3	3	1	0	Phage	shock	protein	B
DivIVA	PF05103.13	gi|300713031|ref|YP_003738843.1|	-	8	6.6	13.3	1.3	9.2	1.9	3.0	1	1	2	3	3	2	0	DivIVA	protein
ATG16	PF08614.11	gi|300713031|ref|YP_003738843.1|	-	8.6	6.5	18.1	0.93	9.7	5.8	2.6	1	1	0	2	2	2	0	Autophagy	protein	16	(ATG16)
DUF5049	PF16468.5	gi|300713032|ref|YP_003738844.1|	-	1.6e-06	27.9	0.1	2.1e-06	27.5	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5049)
Penicil_amidase	PF01804.18	gi|300713033|ref|YP_003738845.1|	-	9.4e-204	679.2	3.8	1.1e-203	679.0	3.8	1.0	1	0	0	1	1	1	1	Penicillin	amidase
DUF3349	PF11829.8	gi|300713034|ref|YP_003738846.1|	-	0.094	13.5	0.0	0.14	12.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3349)
adh_short_C2	PF13561.6	gi|300713035|ref|YP_003738847.1|	-	1.7e-52	178.3	3.8	1.9e-52	178.1	3.8	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|300713035|ref|YP_003738847.1|	-	3.6e-44	150.6	2.7	4.4e-44	150.3	2.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|300713035|ref|YP_003738847.1|	-	1.1e-13	51.5	0.6	1.3e-13	51.2	0.6	1.1	1	0	0	1	1	1	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|300713035|ref|YP_003738847.1|	-	3.8e-07	30.4	1.8	4.7e-07	30.1	0.5	1.8	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
Epimerase	PF01370.21	gi|300713035|ref|YP_003738847.1|	-	4e-07	29.7	0.6	6e-07	29.2	0.6	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|300713035|ref|YP_003738847.1|	-	8.4e-06	25.4	0.1	1.2e-05	24.9	0.1	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|300713035|ref|YP_003738847.1|	-	3e-05	24.0	5.9	4.9e-05	23.3	5.9	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
Polysacc_synt_2	PF02719.15	gi|300713035|ref|YP_003738847.1|	-	0.00023	20.4	0.6	0.00028	20.1	0.6	1.1	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
PALP	PF00291.25	gi|300713035|ref|YP_003738847.1|	-	0.00038	20.0	7.1	0.00098	18.6	7.1	1.9	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
NmrA	PF05368.13	gi|300713035|ref|YP_003738847.1|	-	0.00053	19.6	1.8	0.00081	19.0	1.8	1.3	1	0	0	1	1	1	1	NmrA-like	family
ApbA	PF02558.16	gi|300713035|ref|YP_003738847.1|	-	0.004	16.8	0.3	0.0097	15.6	0.3	1.6	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
XdhC_C	PF13478.6	gi|300713035|ref|YP_003738847.1|	-	0.0053	17.3	1.8	0.006	17.1	0.3	1.9	3	0	0	3	3	2	1	XdhC	Rossmann	domain
F420_oxidored	PF03807.17	gi|300713035|ref|YP_003738847.1|	-	0.0057	17.2	1.0	0.015	15.9	1.0	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.18	gi|300713035|ref|YP_003738847.1|	-	0.0069	16.3	1.1	0.015	15.2	1.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|300713035|ref|YP_003738847.1|	-	0.0085	15.2	3.3	0.026	13.6	3.2	1.7	1	1	1	2	2	2	1	RmlD	substrate	binding	domain
2-Hacid_dh_C	PF02826.19	gi|300713035|ref|YP_003738847.1|	-	0.011	15.1	0.1	0.018	14.4	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|300713035|ref|YP_003738847.1|	-	0.056	13.7	0.4	0.11	12.7	0.4	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Aldedh	PF00171.22	gi|300713036|ref|YP_003738848.1|	-	4e-14	52.0	0.0	1.4e-13	50.2	0.0	1.8	2	1	0	2	2	2	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.14	gi|300713036|ref|YP_003738848.1|	-	0.0035	16.5	0.0	0.0051	15.9	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
AMP-binding	PF00501.28	gi|300713037|ref|YP_003738849.1|	-	0.031	12.9	0.0	3.3	6.2	0.0	2.0	2	0	0	2	2	2	0	AMP-binding	enzyme
SSF	PF00474.17	gi|300713038|ref|YP_003738850.1|	-	2.1e-40	138.8	26.4	2.7e-40	138.5	26.4	1.1	1	0	0	1	1	1	1	Sodium:solute	symporter	family
Cyt_c_ox_IV	PF12270.8	gi|300713038|ref|YP_003738850.1|	-	0.0097	16.0	2.6	0.0097	16.0	2.6	4.4	2	2	2	4	4	4	1	Cytochrome	c	oxidase	subunit	IV
DUF4131	PF13567.6	gi|300713039|ref|YP_003738851.1|	-	0.031	13.9	3.3	0.034	13.8	3.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Phage_holin_3_6	PF07332.11	gi|300713039|ref|YP_003738851.1|	-	0.63	10.1	8.5	0.78	9.8	8.5	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3311	PF11755.8	gi|300713039|ref|YP_003738851.1|	-	0.86	9.6	17.5	1.8	8.5	17.4	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3311)
DUF4175	PF13779.6	gi|300713039|ref|YP_003738851.1|	-	1.1	7.1	5.4	1.2	6.9	5.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
DUF2207	PF09972.9	gi|300713039|ref|YP_003738851.1|	-	3	6.5	4.1	3.4	6.3	4.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF202	PF02656.15	gi|300713039|ref|YP_003738851.1|	-	5.2	7.6	8.7	7.4	7.1	8.7	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF997	PF06196.12	gi|300713039|ref|YP_003738851.1|	-	7.5	6.6	12.6	22	5.2	12.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF997)
OrfB_Zn_ribbon	PF07282.11	gi|300713040|ref|YP_003738852.1|	-	1.6e-23	82.4	0.1	3e-23	81.5	0.1	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|300713040|ref|YP_003738852.1|	-	3.9e-10	40.0	0.1	5.8e-10	39.4	0.1	1.2	1	0	0	1	1	1	1	Probable	transposase
zinc_ribbon_4	PF13717.6	gi|300713040|ref|YP_003738852.1|	-	0.0058	16.5	0.2	0.15	12.0	0.0	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|300713040|ref|YP_003738852.1|	-	0.041	13.9	2.1	0.081	12.9	2.1	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|300713040|ref|YP_003738852.1|	-	0.048	13.8	0.7	0.1	12.7	0.7	1.5	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
HypA	PF01155.19	gi|300713040|ref|YP_003738852.1|	-	0.12	12.4	0.1	0.21	11.6	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|300713040|ref|YP_003738852.1|	-	0.13	11.9	2.1	3.6	7.2	0.2	2.5	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS91	PF14319.6	gi|300713040|ref|YP_003738852.1|	-	0.39	10.8	2.5	1.1	9.4	2.5	1.7	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
zf-ribbon_3	PF13248.6	gi|300713040|ref|YP_003738852.1|	-	0.62	9.6	2.8	5.7	6.5	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin_2	PF18073.1	gi|300713040|ref|YP_003738852.1|	-	3.1	7.6	9.0	5	6.9	1.3	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
IclR	PF01614.18	gi|300713041|ref|YP_003738853.1|	-	1.1e-28	99.6	0.0	2.2e-28	98.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|300713041|ref|YP_003738853.1|	-	3.2e-11	42.9	0.2	3.9e-10	39.4	0.0	2.5	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|300713041|ref|YP_003738853.1|	-	1.2e-06	27.9	0.1	5e-06	26.0	0.0	2.1	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|300713041|ref|YP_003738853.1|	-	4.6e-06	26.4	0.0	1.1e-05	25.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.12	gi|300713041|ref|YP_003738853.1|	-	0.00013	21.6	0.0	0.00033	20.4	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|300713041|ref|YP_003738853.1|	-	0.00019	21.2	0.0	0.0011	18.8	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.12	gi|300713041|ref|YP_003738853.1|	-	0.00023	21.1	0.0	0.00076	19.4	0.0	2.0	1	0	0	1	1	1	1	HTH	domain
Fe_dep_repress	PF01325.19	gi|300713041|ref|YP_003738853.1|	-	0.00088	19.4	0.0	0.0021	18.2	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.7	gi|300713041|ref|YP_003738853.1|	-	0.0015	18.6	0.0	0.0049	16.9	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|300713041|ref|YP_003738853.1|	-	0.0035	17.5	0.0	0.007	16.5	0.0	1.4	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.22	gi|300713041|ref|YP_003738853.1|	-	0.0068	16.3	0.0	0.016	15.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
GerE	PF00196.19	gi|300713041|ref|YP_003738853.1|	-	0.012	15.1	0.0	0.027	14.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
LexA_DNA_bind	PF01726.16	gi|300713041|ref|YP_003738853.1|	-	0.013	15.2	0.0	0.028	14.2	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
TrmB	PF01978.19	gi|300713041|ref|YP_003738853.1|	-	0.017	15.0	0.0	0.04	13.8	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SpoIIID	PF12116.8	gi|300713041|ref|YP_003738853.1|	-	0.023	14.8	0.0	0.046	13.8	0.0	1.5	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
HTH_AsnC-type	PF13404.6	gi|300713041|ref|YP_003738853.1|	-	0.024	14.5	0.0	0.067	13.0	0.0	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Rrf2	PF02082.20	gi|300713041|ref|YP_003738853.1|	-	0.024	15.0	0.0	0.099	13.0	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator
HTH_40	PF14493.6	gi|300713041|ref|YP_003738853.1|	-	0.055	13.9	0.1	0.26	11.7	0.0	2.2	3	0	0	3	3	2	0	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|300713041|ref|YP_003738853.1|	-	0.075	13.2	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LacI	PF00356.21	gi|300713041|ref|YP_003738853.1|	-	0.12	12.2	0.7	36	4.3	0.2	3.1	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	lacI	family
HTH_9	PF08221.11	gi|300713041|ref|YP_003738853.1|	-	0.17	12.0	0.0	0.31	11.2	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HAD_2	PF13419.6	gi|300713042|ref|YP_003738854.1|	-	1.5e-13	51.2	0.0	3.3e-13	50.1	0.0	1.5	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|300713042|ref|YP_003738854.1|	-	1.4e-06	28.7	0.0	1.5e-05	25.4	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|300713042|ref|YP_003738854.1|	-	0.002	18.1	0.0	0.0041	17.1	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
SurA_N_3	PF13624.6	gi|300713042|ref|YP_003738854.1|	-	0.093	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	SurA	N-terminal	domain
Cu_amine_oxid	PF01179.20	gi|300713043|ref|YP_003738855.1|	-	2.9e-153	510.6	3.5	3.5e-153	510.3	3.5	1.1	1	0	0	1	1	1	1	Copper	amine	oxidase,	enzyme	domain
Cu_amine_oxidN3	PF02728.16	gi|300713043|ref|YP_003738855.1|	-	5.8e-14	52.3	0.0	1.3e-13	51.2	0.0	1.6	1	0	0	1	1	1	1	Copper	amine	oxidase,	N3	domain
Cu_amine_oxidN2	PF02727.16	gi|300713043|ref|YP_003738855.1|	-	1.6e-05	25.0	0.0	3.2e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Copper	amine	oxidase,	N2	domain
Laminin_G_3	PF13385.6	gi|300713045|ref|YP_003738857.1|	-	3.9e-06	27.1	0.3	0.0002	21.5	0.0	2.9	2	1	0	2	2	2	1	Concanavalin	A-like	lectin/glucanases	superfamily
DUF5134	PF17197.4	gi|300713046|ref|YP_003738858.1|	-	7.5e-28	97.3	15.9	7.5e-28	97.3	15.9	2.0	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF5134)
HSBP1	PF06825.12	gi|300713047|ref|YP_003738859.1|	-	0.0061	16.4	0.1	0.42	10.5	0.0	2.3	2	0	0	2	2	2	1	Heat	shock	factor	binding	protein	1
ACCA	PF03255.14	gi|300713047|ref|YP_003738859.1|	-	0.037	13.9	0.4	0.055	13.3	0.3	1.4	1	1	0	1	1	1	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
SHE3	PF17078.5	gi|300713047|ref|YP_003738859.1|	-	0.037	13.7	4.3	0.22	11.2	0.6	2.1	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
Spectrin	PF00435.21	gi|300713047|ref|YP_003738859.1|	-	0.1	13.1	1.2	0.18	12.3	1.2	1.5	1	0	0	1	1	1	0	Spectrin	repeat
SelA	PF03841.13	gi|300713047|ref|YP_003738859.1|	-	0.15	11.0	0.0	0.16	10.9	0.0	1.2	1	0	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
AAA_13	PF13166.6	gi|300713047|ref|YP_003738859.1|	-	0.24	10.0	1.8	0.43	9.2	0.1	1.8	1	1	1	2	2	2	0	AAA	domain
ABC_tran_CTD	PF16326.5	gi|300713047|ref|YP_003738859.1|	-	0.29	11.4	4.9	0.26	11.5	2.1	2.2	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
DUF2730	PF10805.8	gi|300713047|ref|YP_003738859.1|	-	0.34	11.0	2.9	1.4	9.1	0.3	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2730)
PKcGMP_CC	PF16808.5	gi|300713047|ref|YP_003738859.1|	-	1.9	8.4	6.4	0.47	10.3	1.6	2.3	3	0	0	3	3	3	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
MscS_porin	PF12795.7	gi|300713047|ref|YP_003738859.1|	-	2.2	7.8	8.2	1.4	8.4	4.7	1.9	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
Tropomyosin_1	PF12718.7	gi|300713047|ref|YP_003738859.1|	-	2.4	8.3	9.5	14	5.8	9.5	2.0	1	1	0	1	1	1	0	Tropomyosin	like
TrmB	PF01978.19	gi|300713048|ref|YP_003738860.1|	-	5e-08	32.7	0.0	8.6e-08	32.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|300713048|ref|YP_003738860.1|	-	0.001	18.8	0.6	0.0031	17.3	0.1	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|300713048|ref|YP_003738860.1|	-	0.029	14.4	0.7	0.059	13.4	0.2	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|300713048|ref|YP_003738860.1|	-	0.039	13.7	0.2	0.072	12.9	0.2	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|300713048|ref|YP_003738860.1|	-	0.051	13.9	0.1	0.094	13.1	0.1	1.5	1	0	0	1	1	1	0	Penicillinase	repressor
PIN_4	PF13638.6	gi|300713049|ref|YP_003738861.1|	-	0.0012	19.1	0.0	0.0017	18.6	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
PIN_12	PF16289.5	gi|300713049|ref|YP_003738861.1|	-	0.061	13.8	0.0	0.35	11.3	0.0	1.9	2	0	0	2	2	2	0	PIN	domain
Abhydrolase_1	PF00561.20	gi|300713051|ref|YP_003738863.1|	-	6.4e-29	101.4	0.0	2.2e-28	99.6	0.0	1.7	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|300713051|ref|YP_003738863.1|	-	6e-19	69.5	0.0	7e-19	69.3	0.0	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|300713051|ref|YP_003738863.1|	-	2.6e-18	66.2	0.5	1.6e-17	63.6	0.5	1.8	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|300713051|ref|YP_003738863.1|	-	0.00025	20.6	0.3	0.025	14.1	0.0	2.4	1	1	1	2	2	2	1	Prolyl	oligopeptidase	family
Abhydrolase_2	PF02230.16	gi|300713051|ref|YP_003738863.1|	-	0.00035	20.4	0.0	0.4	10.4	0.0	2.3	2	0	0	2	2	2	2	Phospholipase/Carboxylesterase
Ndr	PF03096.14	gi|300713051|ref|YP_003738863.1|	-	0.0024	16.6	0.0	0.0043	15.8	0.0	1.5	1	1	0	1	1	1	1	Ndr	family
DLH	PF01738.18	gi|300713051|ref|YP_003738863.1|	-	0.0064	16.1	0.1	0.33	10.5	0.0	2.1	2	0	0	2	2	2	1	Dienelactone	hydrolase	family
Abhydrolase_5	PF12695.7	gi|300713051|ref|YP_003738863.1|	-	0.014	15.1	0.0	0.069	12.9	0.0	1.8	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
PGAP1	PF07819.13	gi|300713051|ref|YP_003738863.1|	-	0.014	15.1	0.0	0.33	10.6	0.0	2.2	2	0	0	2	2	2	0	PGAP1-like	protein
VirJ	PF06057.11	gi|300713051|ref|YP_003738863.1|	-	0.021	14.7	0.0	0.044	13.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	virulence	protein	(VirJ)
DUF1057	PF06342.12	gi|300713051|ref|YP_003738863.1|	-	0.026	13.6	0.0	0.038	13.0	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1057)
Abhydrolase_4	PF08386.10	gi|300713051|ref|YP_003738863.1|	-	0.075	13.1	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	TAP-like	protein
Ser_hydrolase	PF06821.13	gi|300713051|ref|YP_003738863.1|	-	0.079	12.8	0.0	3.5	7.5	0.0	2.2	2	0	0	2	2	2	0	Serine	hydrolase
DUF915	PF06028.11	gi|300713051|ref|YP_003738863.1|	-	0.086	12.2	0.0	0.41	9.9	0.0	1.9	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
Thioesterase	PF00975.20	gi|300713051|ref|YP_003738863.1|	-	0.095	12.8	0.0	0.14	12.3	0.0	1.4	1	1	0	1	1	1	0	Thioesterase	domain
EHN	PF06441.12	gi|300713051|ref|YP_003738863.1|	-	0.15	12.5	0.1	0.51	10.7	0.1	1.9	2	0	0	2	2	1	0	Epoxide	hydrolase	N	terminus
Isochorismatase	PF00857.20	gi|300713051|ref|YP_003738863.1|	-	0.15	12.3	0.0	0.34	11.1	0.0	1.6	2	0	0	2	2	2	0	Isochorismatase	family
HSBP1	PF06825.12	gi|300713052|ref|YP_003738864.1|	-	0.00029	20.6	0.7	6.9	6.6	0.0	3.4	3	0	0	3	3	3	0	Heat	shock	factor	binding	protein	1
Filament	PF00038.21	gi|300713052|ref|YP_003738864.1|	-	0.00069	19.3	1.4	0.00069	19.3	1.4	1.5	2	0	0	2	2	1	1	Intermediate	filament	protein
Prefoldin_2	PF01920.20	gi|300713052|ref|YP_003738864.1|	-	0.0024	17.8	2.1	0.29	11.1	0.9	2.8	2	0	0	2	2	2	1	Prefoldin	subunit
Lebercilin	PF15619.6	gi|300713052|ref|YP_003738864.1|	-	0.0033	17.1	0.6	0.0033	17.1	0.6	2.2	2	1	1	3	3	2	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Fmp27_WPPW	PF10359.9	gi|300713052|ref|YP_003738864.1|	-	0.0037	16.2	2.0	0.0044	15.9	1.6	1.3	1	1	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
PKcGMP_CC	PF16808.5	gi|300713052|ref|YP_003738864.1|	-	0.0038	17.1	2.3	0.0038	17.1	2.3	2.0	2	0	0	2	2	1	1	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
NapD	PF03927.13	gi|300713052|ref|YP_003738864.1|	-	0.0049	16.9	0.3	0.08	13.0	0.0	2.7	2	1	1	3	3	2	1	NapD	protein
TPR_MLP1_2	PF07926.12	gi|300713052|ref|YP_003738864.1|	-	0.0053	16.8	1.5	0.0053	16.8	1.5	2.2	2	1	0	2	2	2	1	TPR/MLP1/MLP2-like	protein
UPF0242	PF06785.11	gi|300713052|ref|YP_003738864.1|	-	0.0055	16.8	2.3	0.01	16.0	2.3	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
MPS2	PF17060.5	gi|300713052|ref|YP_003738864.1|	-	0.006	15.9	0.6	0.006	15.9	0.6	1.8	2	0	0	2	2	2	1	Monopolar	spindle	protein	2
Spectrin	PF00435.21	gi|300713052|ref|YP_003738864.1|	-	0.006	17.0	1.6	0.006	17.0	1.6	2.1	2	1	0	2	2	2	1	Spectrin	repeat
SOGA	PF11365.8	gi|300713052|ref|YP_003738864.1|	-	0.0089	17.1	1.1	8.2	7.6	0.2	2.8	2	1	1	3	3	2	0	Protein	SOGA
ABC_tran_CTD	PF16326.5	gi|300713052|ref|YP_003738864.1|	-	0.009	16.2	7.0	0.033	14.4	5.5	2.7	1	1	1	2	2	2	1	ABC	transporter	C-terminal	domain
SKA1	PF07160.12	gi|300713052|ref|YP_003738864.1|	-	0.014	15.2	3.8	0.015	15.1	2.6	1.6	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
FlaC_arch	PF05377.11	gi|300713052|ref|YP_003738864.1|	-	0.015	15.7	1.6	3.5	8.1	0.1	2.9	1	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
FAM76	PF16046.5	gi|300713052|ref|YP_003738864.1|	-	0.015	14.6	0.6	0.015	14.6	0.6	1.6	1	1	0	1	1	1	0	FAM76	protein
Med9	PF07544.13	gi|300713052|ref|YP_003738864.1|	-	0.02	15.0	0.4	0.11	12.6	0.2	2.2	2	0	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF641	PF04859.12	gi|300713052|ref|YP_003738864.1|	-	0.022	15.1	1.1	0.031	14.6	0.2	1.7	2	0	0	2	2	1	0	Plant	protein	of	unknown	function	(DUF641)
Spore_III_AB	PF09548.10	gi|300713052|ref|YP_003738864.1|	-	0.023	14.8	1.9	0.041	14.0	0.9	1.7	2	0	0	2	2	2	0	Stage	III	sporulation	protein	AB	(spore_III_AB)
PspB	PF06667.12	gi|300713052|ref|YP_003738864.1|	-	0.028	14.5	0.3	0.099	12.7	0.3	2.0	1	1	0	1	1	1	0	Phage	shock	protein	B
ADIP	PF11559.8	gi|300713052|ref|YP_003738864.1|	-	0.029	14.5	1.7	0.029	14.5	1.7	1.9	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
ATG16	PF08614.11	gi|300713052|ref|YP_003738864.1|	-	0.03	14.5	2.8	0.03	14.5	2.8	2.2	1	1	1	2	2	1	0	Autophagy	protein	16	(ATG16)
AAA_13	PF13166.6	gi|300713052|ref|YP_003738864.1|	-	0.037	12.7	7.6	0.62	8.6	0.6	2.0	1	1	1	2	2	2	0	AAA	domain
DUF3349	PF11829.8	gi|300713052|ref|YP_003738864.1|	-	0.041	14.7	1.4	0.13	13.0	0.1	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3349)
Prefoldin	PF02996.17	gi|300713052|ref|YP_003738864.1|	-	0.076	12.9	2.9	0.39	10.7	0.5	2.5	2	0	0	2	2	2	0	Prefoldin	subunit
BLOC1_2	PF10046.9	gi|300713052|ref|YP_003738864.1|	-	0.077	13.3	6.0	0.69	10.3	0.7	3.0	2	1	1	3	3	3	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
YPEB	PF14620.6	gi|300713052|ref|YP_003738864.1|	-	0.08	12.3	4.6	0.2	10.9	4.6	1.7	1	1	0	1	1	1	0	YpeB	sporulation
Herpes_UL6	PF01763.16	gi|300713052|ref|YP_003738864.1|	-	0.084	11.4	1.0	0.13	10.7	1.0	1.4	1	1	0	1	1	1	0	Herpesvirus	UL6	like
DivIC	PF04977.15	gi|300713052|ref|YP_003738864.1|	-	0.09	12.6	2.2	0.2	11.5	0.4	2.2	1	1	1	2	2	2	0	Septum	formation	initiator
SHE3	PF17078.5	gi|300713052|ref|YP_003738864.1|	-	0.15	11.8	2.6	5.3	6.7	0.3	2.3	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
CCD	PF07860.11	gi|300713052|ref|YP_003738864.1|	-	0.15	12.1	0.2	0.15	12.1	0.2	2.2	2	0	0	2	2	2	0	WisP	family	C-Terminal	Region
Spc7	PF08317.11	gi|300713052|ref|YP_003738864.1|	-	0.15	10.9	6.0	0.26	10.1	4.9	1.8	1	1	0	1	1	1	0	Spc7	kinetochore	protein
RPW8	PF05659.11	gi|300713052|ref|YP_003738864.1|	-	0.18	11.5	1.0	0.49	10.1	0.2	2.0	2	0	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
SlyX	PF04102.12	gi|300713052|ref|YP_003738864.1|	-	0.25	12.0	7.4	0.57	10.8	4.4	2.9	2	1	0	2	2	2	0	SlyX
CENP-F_leu_zip	PF10473.9	gi|300713052|ref|YP_003738864.1|	-	0.29	11.2	7.2	0.53	10.3	5.6	2.2	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF1664	PF07889.12	gi|300713052|ref|YP_003738864.1|	-	0.3	11.1	2.8	0.79	9.8	0.6	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
HalX	PF08663.10	gi|300713052|ref|YP_003738864.1|	-	0.33	11.3	12.2	0.4	11.0	2.4	2.9	2	1	1	3	3	2	0	HalX	domain
NPV_P10	PF05531.12	gi|300713052|ref|YP_003738864.1|	-	0.37	11.3	2.7	10	6.7	0.2	2.9	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Occludin_ELL	PF07303.13	gi|300713052|ref|YP_003738864.1|	-	0.39	11.5	3.5	9.3	7.0	0.1	3.2	2	1	1	3	3	3	0	Occludin	homology	domain
HMMR_N	PF15905.5	gi|300713052|ref|YP_003738864.1|	-	0.61	9.5	7.9	0.088	12.3	3.6	1.7	1	1	0	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
PspA_IM30	PF04012.12	gi|300713052|ref|YP_003738864.1|	-	0.67	9.5	7.4	1.9	8.0	0.4	3.0	2	1	1	3	3	3	0	PspA/IM30	family
DUF16	PF01519.16	gi|300713052|ref|YP_003738864.1|	-	0.69	10.4	5.1	0.88	10.1	0.7	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
MIP-T3_C	PF17749.1	gi|300713052|ref|YP_003738864.1|	-	0.72	9.8	5.2	6.4	6.7	0.6	2.5	1	1	0	2	2	2	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
Jnk-SapK_ap_N	PF09744.9	gi|300713052|ref|YP_003738864.1|	-	1.1	9.4	10.9	0.54	10.5	8.0	2.0	2	1	0	2	2	2	0	JNK_SAPK-associated	protein-1
Tropomyosin_1	PF12718.7	gi|300713052|ref|YP_003738864.1|	-	1.6	8.9	16.0	0.11	12.6	9.5	2.2	2	1	1	3	3	3	0	Tropomyosin	like
DUF848	PF05852.11	gi|300713052|ref|YP_003738864.1|	-	1.7	8.7	9.2	0.23	11.6	1.8	2.6	2	1	1	3	3	3	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Not3	PF04065.15	gi|300713052|ref|YP_003738864.1|	-	1.9	7.9	7.2	1.3	8.4	1.1	2.5	1	1	2	3	3	3	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
Cep57_CLD	PF14073.6	gi|300713052|ref|YP_003738864.1|	-	2.7	8.0	9.6	0.28	11.2	1.4	2.7	1	1	2	3	3	3	0	Centrosome	localisation	domain	of	Cep57
DUF4407	PF14362.6	gi|300713052|ref|YP_003738864.1|	-	3.3	7.0	8.9	4.4	6.6	8.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Snapin_Pallidin	PF14712.6	gi|300713052|ref|YP_003738864.1|	-	3.3	8.2	6.0	3.2	8.2	1.2	2.9	2	1	1	3	3	2	0	Snapin/Pallidin
DUF4140	PF13600.6	gi|300713052|ref|YP_003738864.1|	-	3.7	8.0	8.9	0.94	10.0	2.1	2.6	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
MscS_porin	PF12795.7	gi|300713052|ref|YP_003738864.1|	-	5.6	6.4	12.4	3.4	7.1	1.0	2.5	1	1	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
Ald_Xan_dh_C2	PF02738.18	gi|300713053|ref|YP_003738865.1|	-	2.1e-173	577.7	0.5	2.5e-173	577.5	0.5	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|300713053|ref|YP_003738865.1|	-	1.5e-25	89.7	0.4	8.5e-25	87.3	0.4	2.2	1	1	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Amidase	PF01425.21	gi|300713055|ref|YP_003738867.1|	-	1.9e-19	70.0	0.0	2.3e-19	69.7	0.0	1.1	1	0	0	1	1	1	1	Amidase
Beta-lactamase	PF00144.24	gi|300713056|ref|YP_003738868.1|	-	0.08	12.2	0.2	0.084	12.1	0.2	1.0	1	0	0	1	1	1	0	Beta-lactamase
DUF1931	PF09123.11	gi|300713058|ref|YP_003738870.1|	-	0.0016	18.6	0.9	0.0016	18.6	0.9	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
DctP	PF03480.13	gi|300713058|ref|YP_003738870.1|	-	0.003	17.0	0.1	0.003	17.0	0.1	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein,	family	7
CBFD_NFYB_HMF	PF00808.23	gi|300713058|ref|YP_003738870.1|	-	0.0042	17.4	0.1	0.0053	17.0	0.1	1.3	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Glutaredoxin	PF00462.24	gi|300713058|ref|YP_003738870.1|	-	0.12	12.6	0.1	0.15	12.3	0.1	1.1	1	0	0	1	1	1	0	Glutaredoxin
Usp	PF00582.26	gi|300713060|ref|YP_003738872.1|	-	6.1e-25	88.4	0.4	7.6e-25	88.1	0.4	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
CHRD	PF07452.12	gi|300713061|ref|YP_003738873.1|	-	9e-13	49.2	0.0	2.9e-05	25.0	0.0	2.2	2	0	0	2	2	2	2	CHRD	domain
DUF4397	PF14344.6	gi|300713062|ref|YP_003738874.1|	-	1.8e-33	115.9	0.1	1e-28	100.5	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4397)
HTH_5	PF01022.20	gi|300713063|ref|YP_003738875.1|	-	9.8e-10	38.2	0.0	1.4e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|300713063|ref|YP_003738875.1|	-	5.4e-08	32.8	0.0	9e-08	32.1	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|300713063|ref|YP_003738875.1|	-	0.00011	22.0	0.0	0.00028	20.7	0.0	1.6	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|300713063|ref|YP_003738875.1|	-	0.00022	21.0	0.0	0.00032	20.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.6	gi|300713063|ref|YP_003738875.1|	-	0.00033	20.6	0.0	0.00039	20.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|300713063|ref|YP_003738875.1|	-	0.0022	17.8	0.0	0.0031	17.3	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
DUF1601	PF07671.11	gi|300713063|ref|YP_003738875.1|	-	0.012	15.5	1.2	0.18	11.7	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1601)
Rrf2	PF02082.20	gi|300713063|ref|YP_003738875.1|	-	0.032	14.6	0.0	0.043	14.2	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_24	PF13412.6	gi|300713063|ref|YP_003738875.1|	-	0.042	13.4	0.0	0.13	11.9	0.0	1.8	1	1	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.12	gi|300713063|ref|YP_003738875.1|	-	0.099	13.0	0.0	0.14	12.5	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
RP-C	PF03428.13	gi|300713063|ref|YP_003738875.1|	-	0.12	12.1	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
B12D	PF06522.11	gi|300713065|ref|YP_003738877.1|	-	2.8	7.8	4.3	2	8.3	0.1	2.0	2	0	0	2	2	2	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
DUF5049	PF16468.5	gi|300713066|ref|YP_003738878.1|	-	0.047	13.6	0.2	0.056	13.4	0.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5049)
Ferritin_2	PF13668.6	gi|300713067|ref|YP_003738879.1|	-	1.1e-36	126.1	0.0	1.3e-36	125.8	0.0	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.17	gi|300713067|ref|YP_003738879.1|	-	0.0031	17.9	0.1	0.061	13.7	0.0	2.4	2	1	1	3	3	3	1	Rubrerythrin
DUF5560	PF17715.1	gi|300713067|ref|YP_003738879.1|	-	0.1	12.1	0.1	0.15	11.5	0.1	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5560)
Acetyltransf_1	PF00583.25	gi|300713068|ref|YP_003738880.1|	-	2.2e-15	56.9	0.0	2.7e-15	56.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|300713068|ref|YP_003738880.1|	-	5.3e-11	42.6	0.0	5.9e-11	42.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|300713068|ref|YP_003738880.1|	-	4.2e-10	39.9	0.1	5.9e-10	39.4	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|300713068|ref|YP_003738880.1|	-	3.1e-07	30.3	0.0	5e-07	29.6	0.0	1.4	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|300713068|ref|YP_003738880.1|	-	5.8e-05	23.3	0.0	7.3e-05	23.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|300713068|ref|YP_003738880.1|	-	0.0012	18.9	0.0	0.0023	18.0	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|300713068|ref|YP_003738880.1|	-	0.023	14.8	0.0	0.033	14.3	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Tail_P2_I	PF09684.10	gi|300713068|ref|YP_003738880.1|	-	0.099	12.6	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	Phage	tail	protein	(Tail_P2_I)
YyzF	PF14116.6	gi|300713069|ref|YP_003738881.1|	-	0.018	15.0	2.0	2.5	8.2	0.7	2.2	2	0	0	2	2	2	0	YyzF-like	protein
PcrB	PF01884.17	gi|300713070|ref|YP_003738882.1|	-	8.7e-36	123.5	0.0	1.3e-35	122.9	0.0	1.1	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.21	gi|300713070|ref|YP_003738882.1|	-	0.0011	18.4	0.0	0.0019	17.7	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DUF1724	PF08350.10	gi|300713071|ref|YP_003738883.1|	-	4.1e-05	23.6	0.0	6.8e-05	22.9	0.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
Lipase_GDSL_3	PF14606.6	gi|300713071|ref|YP_003738883.1|	-	0.03	14.5	0.0	0.039	14.1	0.0	1.3	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
p450	PF00067.22	gi|300713072|ref|YP_003738884.1|	-	1.9e-78	264.3	0.1	2.2e-78	264.1	0.1	1.0	1	0	0	1	1	1	1	Cytochrome	P450
SlyX	PF04102.12	gi|300713073|ref|YP_003738885.1|	-	5.1e-07	30.2	2.6	1.3e-06	28.9	2.6	1.7	1	0	0	1	1	1	1	SlyX
HAUS5	PF14817.6	gi|300713073|ref|YP_003738885.1|	-	0.001	17.9	0.3	0.0015	17.4	0.3	1.1	1	0	0	1	1	1	1	HAUS	augmin-like	complex	subunit	5
HSBP1	PF06825.12	gi|300713073|ref|YP_003738885.1|	-	0.0032	17.3	2.5	1.5	8.7	0.2	2.6	1	1	1	2	2	2	2	Heat	shock	factor	binding	protein	1
PhaP_Bmeg	PF09602.10	gi|300713073|ref|YP_003738885.1|	-	0.0081	16.1	1.8	0.014	15.3	1.8	1.4	1	0	0	1	1	1	1	Polyhydroxyalkanoic	acid	inclusion	protein	(PhaP_Bmeg)
HAUS-augmin3	PF14932.6	gi|300713073|ref|YP_003738885.1|	-	0.02	14.5	3.7	0.033	13.8	3.7	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
DivIVA	PF05103.13	gi|300713073|ref|YP_003738885.1|	-	0.02	14.9	2.1	0.035	14.2	2.1	1.4	1	0	0	1	1	1	0	DivIVA	protein
XhlA	PF10779.9	gi|300713073|ref|YP_003738885.1|	-	0.031	14.5	4.4	0.062	13.5	3.9	1.9	1	1	0	1	1	1	0	Haemolysin	XhlA
FlaC_arch	PF05377.11	gi|300713073|ref|YP_003738885.1|	-	0.031	14.7	4.4	0.37	11.2	1.1	2.4	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4988	PF16378.5	gi|300713073|ref|YP_003738885.1|	-	0.035	13.8	2.7	0.2	11.3	1.2	2.3	3	0	0	3	3	2	0	Domain	of	unknown	function
SHE3	PF17078.5	gi|300713073|ref|YP_003738885.1|	-	0.04	13.6	3.7	0.077	12.7	3.7	1.5	1	0	0	1	1	1	0	SWI5-dependent	HO	expression	protein	3
BRE1	PF08647.11	gi|300713073|ref|YP_003738885.1|	-	0.042	13.9	1.4	0.11	12.6	1.4	1.7	1	0	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
Spc7	PF08317.11	gi|300713073|ref|YP_003738885.1|	-	0.045	12.6	3.3	0.067	12.1	3.3	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
HrpB7	PF09486.10	gi|300713073|ref|YP_003738885.1|	-	0.062	13.7	4.7	0.11	12.9	4.7	1.4	1	0	0	1	1	1	0	Bacterial	type	III	secretion	protein	(HrpB7)
DUF1664	PF07889.12	gi|300713073|ref|YP_003738885.1|	-	0.067	13.2	1.8	0.14	12.2	1.8	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spectrin	PF00435.21	gi|300713073|ref|YP_003738885.1|	-	0.074	13.5	3.1	0.38	11.3	2.1	2.2	2	0	0	2	2	2	0	Spectrin	repeat
Wtap	PF17098.5	gi|300713073|ref|YP_003738885.1|	-	0.076	12.9	4.8	0.14	12.1	4.8	1.4	1	0	0	1	1	1	0	WTAP/Mum2p	family
TPD52	PF04201.15	gi|300713073|ref|YP_003738885.1|	-	0.078	12.6	0.5	0.14	11.8	0.5	1.4	1	0	0	1	1	1	0	Tumour	protein	D52	family
NPV_P10	PF05531.12	gi|300713073|ref|YP_003738885.1|	-	0.11	12.9	0.7	0.27	11.7	0.7	1.7	1	0	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DASH_Spc19	PF08287.11	gi|300713073|ref|YP_003738885.1|	-	0.12	12.2	4.8	0.078	12.9	2.4	1.8	2	0	0	2	2	2	0	Spc19
DUF3552	PF12072.8	gi|300713073|ref|YP_003738885.1|	-	0.15	11.5	6.5	0.28	10.6	6.5	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3552)
Med9	PF07544.13	gi|300713073|ref|YP_003738885.1|	-	0.22	11.6	2.4	2.2	8.4	0.3	2.4	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Syntaxin-6_N	PF09177.11	gi|300713073|ref|YP_003738885.1|	-	0.26	11.9	3.9	0.65	10.6	3.9	1.7	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
DUF16	PF01519.16	gi|300713073|ref|YP_003738885.1|	-	0.28	11.7	4.7	7.9	7.0	0.1	2.4	1	1	0	2	2	2	0	Protein	of	unknown	function	DUF16
DUF4407	PF14362.6	gi|300713073|ref|YP_003738885.1|	-	0.31	10.3	1.9	0.47	9.7	1.9	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
CorA	PF01544.18	gi|300713073|ref|YP_003738885.1|	-	0.33	10.2	3.0	0.49	9.6	3.0	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF948	PF06103.11	gi|300713073|ref|YP_003738885.1|	-	0.45	10.8	3.2	0.85	9.9	3.2	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
ABC_tran_CTD	PF16326.5	gi|300713073|ref|YP_003738885.1|	-	2.9	8.2	11.5	0.86	9.9	0.6	3.5	3	1	1	4	4	4	0	ABC	transporter	C-terminal	domain
PKcGMP_CC	PF16808.5	gi|300713073|ref|YP_003738885.1|	-	5.9	6.8	9.0	0.4	10.6	0.7	2.8	1	1	2	3	3	3	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
AstE_AspA	PF04952.14	gi|300713074|ref|YP_003738886.1|	-	1.1e-12	47.7	0.0	1.8e-12	46.9	0.0	1.3	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M14	PF00246.24	gi|300713074|ref|YP_003738886.1|	-	0.033	14.0	0.1	0.26	11.1	0.1	2.0	2	0	0	2	2	2	0	Zinc	carboxypeptidase
PemK_toxin	PF02452.17	gi|300713075|ref|YP_003738887.1|	-	0.021	15.2	0.0	0.023	15.1	0.0	1.0	1	0	0	1	1	1	0	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
MarR_2	PF12802.7	gi|300713076|ref|YP_003738888.1|	-	1.3e-06	28.2	0.0	1.9e-06	27.7	0.0	1.3	1	1	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|300713076|ref|YP_003738888.1|	-	3e-05	24.1	0.0	4.9e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|300713076|ref|YP_003738888.1|	-	0.00081	19.2	0.0	0.0014	18.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|300713076|ref|YP_003738888.1|	-	0.0013	18.6	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|300713076|ref|YP_003738888.1|	-	0.0073	16.3	0.0	0.014	15.4	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|300713076|ref|YP_003738888.1|	-	0.029	14.7	0.0	0.05	14.0	0.0	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
HTH_Crp_2	PF13545.6	gi|300713076|ref|YP_003738888.1|	-	0.047	13.7	0.0	0.08	12.9	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Head-tail_con	PF12236.8	gi|300713076|ref|YP_003738888.1|	-	0.058	11.8	0.0	2.7	6.3	0.0	2.0	1	1	1	2	2	2	0	Bacteriophage	head	to	tail	connecting	protein
Rrf2	PF02082.20	gi|300713076|ref|YP_003738888.1|	-	0.069	13.5	0.0	0.11	12.9	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|300713076|ref|YP_003738888.1|	-	0.074	12.9	0.0	0.099	12.5	0.0	1.3	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Dimerisation	PF08100.11	gi|300713076|ref|YP_003738888.1|	-	0.2	11.7	0.0	0.32	11.0	0.0	1.4	1	0	0	1	1	1	0	Dimerisation	domain
PNP_phzG_C	PF10590.9	gi|300713076|ref|YP_003738888.1|	-	0.55	10.4	2.8	1.5	8.9	1.5	2.2	2	1	1	3	3	3	0	Pyridoxine	5'-phosphate	oxidase	C-terminal	dimerisation	region
Cyt_bd_oxida_II	PF02322.15	gi|300713078|ref|YP_003738890.1|	-	2.3e-74	250.5	31.9	2.7e-74	250.3	31.9	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
DUF1673	PF07895.11	gi|300713078|ref|YP_003738890.1|	-	0.058	13.1	4.8	0.023	14.4	1.8	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1673)
Cyt_bd_oxida_I	PF01654.17	gi|300713079|ref|YP_003738891.1|	-	1.3e-144	481.9	22.1	1.5e-144	481.7	22.1	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	I
HTH_20	PF12840.7	gi|300713080|ref|YP_003738892.1|	-	5.3e-09	36.0	0.4	8.6e-09	35.3	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|300713080|ref|YP_003738892.1|	-	6.4e-05	22.7	0.4	9e-05	22.2	0.4	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|300713080|ref|YP_003738892.1|	-	0.00031	20.6	0.2	0.00043	20.1	0.2	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|300713080|ref|YP_003738892.1|	-	0.00089	19.1	0.0	0.0013	18.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|300713080|ref|YP_003738892.1|	-	0.0019	18.1	0.0	0.0023	17.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
FUR	PF01475.19	gi|300713080|ref|YP_003738892.1|	-	0.016	15.3	0.0	0.02	15.1	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_7	PF02796.15	gi|300713080|ref|YP_003738892.1|	-	0.019	15.0	0.0	0.034	14.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
RP-C	PF03428.13	gi|300713080|ref|YP_003738892.1|	-	0.04	13.6	0.0	0.05	13.3	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_11	PF08279.12	gi|300713080|ref|YP_003738892.1|	-	0.053	13.5	0.1	0.078	12.9	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
PadR	PF03551.14	gi|300713080|ref|YP_003738892.1|	-	0.062	13.3	0.0	0.091	12.7	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Rrf2	PF02082.20	gi|300713080|ref|YP_003738892.1|	-	0.078	13.3	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
TFIIB	PF00382.19	gi|300713081|ref|YP_003738893.1|	-	8.6e-35	118.6	0.1	4.9e-16	58.5	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|300713081|ref|YP_003738893.1|	-	3.4e-12	45.7	3.7	8.1e-12	44.5	3.7	1.7	1	1	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|300713081|ref|YP_003738893.1|	-	0.0027	17.6	0.2	0.0064	16.4	0.2	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.19	gi|300713081|ref|YP_003738893.1|	-	0.023	14.8	0.0	0.14	12.3	0.0	2.1	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
zf-ribbon_3	PF13248.6	gi|300713081|ref|YP_003738893.1|	-	0.55	9.7	2.6	5.2	6.6	2.8	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
MFS_1	PF07690.16	gi|300713083|ref|YP_003738895.1|	-	7.9e-49	166.5	66.9	3.4e-39	134.8	42.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|300713083|ref|YP_003738895.1|	-	3.1e-07	29.6	21.9	0.00042	19.3	9.4	2.4	1	1	1	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|300713083|ref|YP_003738895.1|	-	7.8e-06	25.0	30.5	0.0027	16.6	11.4	2.2	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
UNC-93	PF05978.16	gi|300713083|ref|YP_003738895.1|	-	0.004	16.9	0.6	0.01	15.5	0.6	1.7	1	0	0	1	1	1	1	Ion	channel	regulatory	protein	UNC-93
OATP	PF03137.20	gi|300713083|ref|YP_003738895.1|	-	7	4.8	6.9	2.8	6.1	0.1	2.4	2	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
BAT	PF15915.5	gi|300713084|ref|YP_003738896.1|	-	1.3e-38	132.3	5.1	1.3e-38	132.3	5.1	3.0	3	0	0	3	3	3	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|300713084|ref|YP_003738896.1|	-	1.8e-25	89.9	3.2	1.2e-15	58.1	0.1	2.8	2	0	0	2	2	2	2	GAF	domain
HTH_10	PF04967.12	gi|300713084|ref|YP_003738896.1|	-	5.9e-18	64.4	0.0	1.7e-17	62.9	0.0	1.9	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|300713084|ref|YP_003738896.1|	-	1.3e-17	64.1	2.6	6.3e-13	48.9	0.1	3.5	3	0	0	3	3	3	2	PAS	fold
PAS_9	PF13426.7	gi|300713084|ref|YP_003738896.1|	-	1.6e-12	47.6	0.6	3e-08	33.9	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.6	gi|300713084|ref|YP_003738896.1|	-	1.8e-11	44.5	1.2	1.8e-06	28.3	0.0	2.9	3	0	0	3	3	3	2	GAF	domain
Response_reg	PF00072.24	gi|300713084|ref|YP_003738896.1|	-	2.3e-11	43.8	0.7	6.2e-11	42.5	0.0	2.2	2	0	0	2	2	1	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|300713084|ref|YP_003738896.1|	-	4.1e-08	33.9	0.4	0.0035	18.0	0.0	3.5	3	0	0	3	3	3	2	GAF	domain
PAS	PF00989.25	gi|300713084|ref|YP_003738896.1|	-	6e-07	29.5	2.4	0.01	15.8	0.0	3.8	4	0	0	4	4	4	2	PAS	fold
Sigma70_r4	PF04545.16	gi|300713084|ref|YP_003738896.1|	-	7e-05	22.3	2.2	0.0014	18.1	0.0	3.7	4	0	0	4	4	4	1	Sigma-70,	region	4
PAS_8	PF13188.7	gi|300713084|ref|YP_003738896.1|	-	0.00013	21.9	0.0	0.0012	18.8	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|300713084|ref|YP_003738896.1|	-	0.0084	16.4	0.5	0.091	13.0	0.2	2.9	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_7	PF12860.7	gi|300713084|ref|YP_003738896.1|	-	0.014	15.6	4.9	0.74	10.0	0.1	3.7	4	0	0	4	4	4	0	PAS	fold
HTH_22	PF13309.6	gi|300713084|ref|YP_003738896.1|	-	0.032	14.3	0.0	0.11	12.6	0.0	2.0	1	0	0	1	1	1	0	HTH	domain
DZR	PF12773.7	gi|300713085|ref|YP_003738897.1|	-	0.00015	21.7	0.7	0.00018	21.5	0.7	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-C2HC5	PF06221.13	gi|300713085|ref|YP_003738897.1|	-	0.00019	21.4	0.3	0.00022	21.2	0.3	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
DUF1272	PF06906.11	gi|300713085|ref|YP_003738897.1|	-	0.0045	17.0	0.8	0.0055	16.8	0.8	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
zinc-ribbons_6	PF07191.12	gi|300713085|ref|YP_003738897.1|	-	0.019	14.9	0.2	0.022	14.7	0.2	1.1	1	0	0	1	1	1	0	zinc-ribbons
zf-RanBP	PF00641.18	gi|300713085|ref|YP_003738897.1|	-	0.024	13.9	1.3	0.15	11.4	0.2	2.0	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
zinc_ribbon_10	PF10058.9	gi|300713085|ref|YP_003738897.1|	-	0.055	13.2	2.3	0.15	11.8	0.1	2.0	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn-ribbon_8	PF09723.10	gi|300713085|ref|YP_003738897.1|	-	0.067	13.3	3.4	0.18	12.0	3.3	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|300713085|ref|YP_003738897.1|	-	0.073	12.4	2.6	4.3	6.7	0.3	2.1	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
OrfB_Zn_ribbon	PF07282.11	gi|300713085|ref|YP_003738897.1|	-	0.1	12.5	0.8	0.11	12.4	0.8	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Rubredoxin_2	PF18073.1	gi|300713085|ref|YP_003738897.1|	-	1.1	9.0	6.6	7.2	6.4	6.6	1.9	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
ELFV_dehydrog	PF00208.21	gi|300713087|ref|YP_003738899.1|	-	3.6e-72	243.0	0.2	4.3e-72	242.8	0.2	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|300713087|ref|YP_003738899.1|	-	5.7e-34	116.8	0.0	1e-33	116.0	0.0	1.5	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|300713087|ref|YP_003738899.1|	-	0.0014	18.0	0.0	0.0024	17.3	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|300713087|ref|YP_003738899.1|	-	0.033	13.8	0.0	0.049	13.2	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
HEM4	PF02602.15	gi|300713088|ref|YP_003738900.1|	-	1.2e-27	96.7	0.1	1.4e-27	96.6	0.1	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
Glyco_trans_4_2	PF13477.6	gi|300713088|ref|YP_003738900.1|	-	0.16	12.0	0.0	12	5.9	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
MFS_1	PF07690.16	gi|300713089|ref|YP_003738901.1|	-	1.4e-38	132.7	76.0	2.8e-31	108.7	41.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.6	gi|300713089|ref|YP_003738901.1|	-	4.7e-07	28.7	15.0	4.7e-07	28.7	15.0	2.3	2	1	1	3	3	3	1	MFS/sugar	transport	protein
CitMHS	PF03600.16	gi|300713091|ref|YP_003738903.1|	-	0.089	12.0	3.9	0.098	11.8	3.9	1.1	1	0	0	1	1	1	0	Citrate	transporter
Hydrolase	PF00702.26	gi|300713093|ref|YP_003738905.1|	-	1.2e-29	104.1	3.0	1.9e-29	103.4	3.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|300713093|ref|YP_003738905.1|	-	7.5e-06	25.9	0.1	1.3e-05	25.1	0.1	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
E1-E2_ATPase	PF00122.20	gi|300713093|ref|YP_003738905.1|	-	0.00032	20.3	0.7	0.00032	20.3	0.7	2.1	2	0	0	2	2	2	1	E1-E2	ATPase
HAD	PF12710.7	gi|300713093|ref|YP_003738905.1|	-	0.038	14.4	0.5	0.16	12.4	0.5	2.2	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
SpoVAE	PF14097.6	gi|300713093|ref|YP_003738905.1|	-	0.044	13.4	1.2	0.13	11.9	0.6	1.9	2	0	0	2	2	2	0	Stage	V	sporulation	protein	AE1
DUF2148	PF09918.9	gi|300713093|ref|YP_003738905.1|	-	0.21	11.6	1.4	19	5.4	0.5	2.8	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	ferredoxin	domain	(DUF2148)
DS	PF01916.17	gi|300713094|ref|YP_003738906.1|	-	7.5e-100	333.9	0.0	9.1e-100	333.6	0.0	1.1	1	0	0	1	1	1	1	Deoxyhypusine	synthase
HEM4	PF02602.15	gi|300713095|ref|YP_003738907.1|	-	2.9e-38	131.5	0.9	3.4e-38	131.3	0.9	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
MFS_1	PF07690.16	gi|300713096|ref|YP_003738908.1|	-	2.6e-41	141.7	45.4	7e-29	100.9	28.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|300713096|ref|YP_003738908.1|	-	2.8e-07	29.8	23.1	6.3e-05	22.0	6.8	2.5	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|300713096|ref|YP_003738908.1|	-	0.17	10.2	26.1	0.8	8.0	26.1	1.9	1	1	0	1	1	1	0	Transmembrane	secretion	effector
OATP	PF03137.20	gi|300713096|ref|YP_003738908.1|	-	9.6	4.4	10.2	5.2	5.2	1.5	2.9	2	2	1	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
ADH_zinc_N_2	PF13602.6	gi|300713097|ref|YP_003738909.1|	-	4.3e-24	86.1	0.1	7.2e-24	85.3	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|300713097|ref|YP_003738909.1|	-	1.5e-15	57.3	0.0	2.4e-15	56.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|300713097|ref|YP_003738909.1|	-	5.3e-06	26.3	0.0	2e-05	24.4	0.0	1.9	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
AlaDh_PNT_C	PF01262.21	gi|300713097|ref|YP_003738909.1|	-	0.073	12.4	0.1	0.12	11.7	0.1	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DapB_N	PF01113.20	gi|300713097|ref|YP_003738909.1|	-	0.086	13.0	0.3	0.22	11.7	0.3	1.7	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Citrate_bind	PF16114.5	gi|300713097|ref|YP_003738909.1|	-	0.11	12.0	0.1	0.24	10.9	0.1	1.5	1	0	0	1	1	1	0	ATP	citrate	lyase	citrate-binding
NAD_binding_7	PF13241.6	gi|300713097|ref|YP_003738909.1|	-	0.11	12.9	0.1	0.23	11.9	0.1	1.5	1	1	0	1	1	1	0	Putative	NAD(P)-binding
AA_permease_2	PF13520.6	gi|300713098|ref|YP_003738910.1|	-	1.3e-27	96.7	29.7	1.3e-27	96.7	29.7	2.0	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.21	gi|300713098|ref|YP_003738910.1|	-	1.7e-13	50.0	37.6	1.7e-13	50.0	37.6	2.1	1	1	1	2	2	2	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|300713098|ref|YP_003738910.1|	-	0.00031	19.7	8.6	0.00031	19.7	8.6	2.0	2	2	0	2	2	2	1	Spore	germination	protein
Rhodanese	PF00581.20	gi|300713099|ref|YP_003738911.1|	-	2.5e-29	101.9	0.0	2.4e-14	53.8	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Aminotran_3	PF00202.21	gi|300713100|ref|YP_003738912.1|	-	1.8e-78	264.0	0.0	2.4e-78	263.6	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
APH	PF01636.23	gi|300713100|ref|YP_003738912.1|	-	1.9e-23	83.6	1.1	1.9e-23	83.6	1.1	1.8	2	0	0	2	2	2	1	Phosphotransferase	enzyme	family
Aminotran_1_2	PF00155.21	gi|300713100|ref|YP_003738912.1|	-	0.00011	21.5	0.0	0.00038	19.7	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Pkinase	PF00069.25	gi|300713100|ref|YP_003738912.1|	-	0.022	14.2	0.0	0.036	13.4	0.0	1.3	1	0	0	1	1	1	0	Protein	kinase	domain
Choline_kinase	PF01633.20	gi|300713100|ref|YP_003738912.1|	-	0.13	11.9	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	Choline/ethanolamine	kinase
MafB19-deam	PF14437.6	gi|300713101|ref|YP_003738913.1|	-	3.5e-15	56.0	0.0	4.3e-15	55.7	0.0	1.1	1	0	0	1	1	1	1	MafB19-like	deaminase
dCMP_cyt_deam_1	PF00383.23	gi|300713101|ref|YP_003738913.1|	-	6.5e-13	48.4	0.0	9.4e-13	47.9	0.0	1.2	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
SNAD4	PF18750.1	gi|300713101|ref|YP_003738913.1|	-	0.00011	22.3	0.0	0.00017	21.6	0.0	1.2	1	0	0	1	1	1	1	Secreted	Novel	AID/APOBEC-like	Deaminase	4
NAD1	PF18778.1	gi|300713101|ref|YP_003738913.1|	-	0.00057	20.0	0.0	0.00091	19.4	0.0	1.2	1	0	0	1	1	1	1	Novel	AID	APOBEC	clade	1
APOBEC2	PF18772.1	gi|300713101|ref|YP_003738913.1|	-	0.0023	18.0	0.0	0.0029	17.7	0.0	1.2	1	0	0	1	1	1	1	APOBEC2
NAD2	PF18782.1	gi|300713101|ref|YP_003738913.1|	-	0.014	15.5	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Novel	AID	APOBEC	clade	2
APOBEC_N	PF08210.11	gi|300713101|ref|YP_003738913.1|	-	0.039	13.8	0.0	0.051	13.5	0.0	1.1	1	0	0	1	1	1	0	APOBEC-like	N-terminal	domain
TauE	PF01925.19	gi|300713102|ref|YP_003738914.1|	-	6.8e-13	48.8	38.4	8.3e-13	48.5	38.4	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Multi_Drug_Res	PF00893.19	gi|300713103|ref|YP_003738915.1|	-	2.6e-23	82.5	3.5	3.6e-23	82.0	3.5	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
DUF488	PF04343.13	gi|300713104|ref|YP_003738916.1|	-	2.4e-07	31.4	1.2	1.2e-06	29.1	1.2	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF488
HxlR	PF01638.17	gi|300713105|ref|YP_003738917.1|	-	2.1e-17	62.8	0.0	2.2e-17	62.7	0.0	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.6	gi|300713105|ref|YP_003738917.1|	-	2.9e-05	24.2	0.0	3.3e-05	24.0	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.14	gi|300713105|ref|YP_003738917.1|	-	0.00046	20.1	0.0	0.00071	19.5	0.0	1.3	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.7	gi|300713105|ref|YP_003738917.1|	-	0.002	18.1	0.0	0.0056	16.7	0.0	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|300713105|ref|YP_003738917.1|	-	0.02	14.9	0.0	0.023	14.7	0.0	1.2	1	1	0	1	1	1	0	Winged	helix-turn-helix
Protoglobin	PF11563.8	gi|300713106|ref|YP_003738918.1|	-	2e-38	131.8	0.3	2.3e-38	131.6	0.3	1.0	1	0	0	1	1	1	1	Protoglobin
2-Hacid_dh_C	PF02826.19	gi|300713107|ref|YP_003738919.1|	-	1.8e-51	174.0	0.0	2.5e-51	173.6	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|300713107|ref|YP_003738919.1|	-	1.4e-06	28.0	0.0	1.8e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|300713107|ref|YP_003738919.1|	-	1.4e-05	25.6	0.0	2.7e-05	24.7	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|300713107|ref|YP_003738919.1|	-	0.011	15.8	0.0	0.024	14.8	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|300713107|ref|YP_003738919.1|	-	0.017	15.0	0.0	0.11	12.4	0.0	2.1	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|300713107|ref|YP_003738919.1|	-	0.039	14.0	0.1	0.087	12.9	0.1	1.6	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|300713107|ref|YP_003738919.1|	-	0.056	13.9	0.0	0.1	13.1	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
ThiF	PF00899.21	gi|300713107|ref|YP_003738919.1|	-	0.1	12.0	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	ThiF	family
DUF3426	PF11906.8	gi|300713110|ref|YP_003738922.1|	-	0.00079	19.6	0.0	0.0011	19.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3426)
TAT_signal	PF10518.9	gi|300713110|ref|YP_003738922.1|	-	0.0037	17.0	0.0	0.0061	16.3	0.0	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF2393	PF09624.10	gi|300713110|ref|YP_003738922.1|	-	0.044	13.8	0.0	0.088	12.8	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2393)
Zip	PF02535.22	gi|300713110|ref|YP_003738922.1|	-	0.33	10.1	1.5	0.38	9.9	1.5	1.1	1	0	0	1	1	1	0	ZIP	Zinc	transporter
Presenilin	PF01080.17	gi|300713110|ref|YP_003738922.1|	-	0.38	9.5	3.2	0.43	9.3	3.2	1.1	1	0	0	1	1	1	0	Presenilin
DUF3493	PF11998.8	gi|300713113|ref|YP_003738925.1|	-	2	8.6	6.8	0.15	12.3	1.2	1.8	2	0	0	2	2	2	0	Low	psii	accumulation1	/	Rep27
Promethin	PF16015.5	gi|300713113|ref|YP_003738925.1|	-	7.5	6.5	14.1	0.74	9.8	9.3	1.8	2	1	0	2	2	2	0	Promethin
DUF87	PF01935.17	gi|300713115|ref|YP_003738927.1|	-	0.00012	22.3	5.4	0.00031	20.9	0.0	2.7	3	0	0	3	3	3	1	Helicase	HerA,	central	domain
AAA	PF00004.29	gi|300713115|ref|YP_003738927.1|	-	0.063	13.7	0.2	1.7	9.1	0.0	2.5	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.7	gi|300713115|ref|YP_003738927.1|	-	0.13	11.2	0.1	0.36	9.7	0.1	1.7	2	0	0	2	2	2	0	AAA-like	domain
DUF1374	PF07118.11	gi|300713115|ref|YP_003738927.1|	-	0.14	12.7	0.3	0.63	10.6	0.0	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1374)
EzrA	PF06160.12	gi|300713115|ref|YP_003738927.1|	-	0.95	7.6	6.6	0.58	8.3	1.3	2.1	2	0	0	2	2	2	0	Septation	ring	formation	regulator,	EzrA
FlaC_arch	PF05377.11	gi|300713115|ref|YP_003738927.1|	-	1.7	9.1	3.7	25	5.3	0.6	3.6	3	0	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
BLOC1_2	PF10046.9	gi|300713116|ref|YP_003738928.1|	-	0.029	14.6	2.5	0.045	14.1	0.5	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
NPV_P10	PF05531.12	gi|300713116|ref|YP_003738928.1|	-	0.075	13.5	1.3	0.14	12.7	0.4	2.0	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Rv2175c_C	PF18367.1	gi|300713116|ref|YP_003738928.1|	-	0.08	13.0	0.1	0.21	11.7	0.1	1.7	1	0	0	1	1	1	0	Rv2175c	C-terminal	domain	of	unknown	function
ABC_tran_CTD	PF16326.5	gi|300713116|ref|YP_003738928.1|	-	0.14	12.5	0.3	0.14	12.5	0.3	2.2	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
HAD_2	PF13419.6	gi|300713117|ref|YP_003738929.1|	-	1.1e-07	32.2	0.0	1.3e-07	31.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|300713117|ref|YP_003738929.1|	-	4.8e-05	23.3	0.1	7.7e-05	22.7	0.1	1.3	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|300713117|ref|YP_003738929.1|	-	0.0018	18.6	0.0	0.0024	18.2	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PadR	PF03551.14	gi|300713118|ref|YP_003738930.1|	-	1.1e-05	25.2	0.1	1.3e-05	25.0	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|300713118|ref|YP_003738930.1|	-	0.0036	17.7	0.0	0.0041	17.6	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|300713118|ref|YP_003738930.1|	-	0.014	15.2	0.0	0.016	15.0	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|300713118|ref|YP_003738930.1|	-	0.061	13.3	0.0	0.073	13.1	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn-helix
ABC_tran	PF00005.27	gi|300713119|ref|YP_003738931.1|	-	1.5e-32	113.0	0.0	2e-32	112.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|300713119|ref|YP_003738931.1|	-	3.5e-11	43.5	0.1	4.6e-05	23.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|300713119|ref|YP_003738931.1|	-	0.00024	20.6	0.9	0.0069	15.8	0.9	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|300713119|ref|YP_003738931.1|	-	0.00043	20.0	0.0	0.00081	19.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|300713119|ref|YP_003738931.1|	-	0.00062	19.7	0.0	0.0015	18.5	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_16	PF13191.6	gi|300713119|ref|YP_003738931.1|	-	0.0014	19.0	1.2	0.0077	16.6	1.2	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|300713119|ref|YP_003738931.1|	-	0.0023	17.5	0.1	1.3	8.5	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|300713119|ref|YP_003738931.1|	-	0.0082	15.9	0.1	1.1	9.0	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
ABC_ATPase	PF09818.9	gi|300713119|ref|YP_003738931.1|	-	0.011	14.6	0.5	0.18	10.6	0.2	2.3	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
DLIC	PF05783.11	gi|300713119|ref|YP_003738931.1|	-	0.012	14.5	0.0	0.018	13.9	0.0	1.2	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_23	PF13476.6	gi|300713119|ref|YP_003738931.1|	-	0.015	15.8	0.0	0.033	14.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|300713119|ref|YP_003738931.1|	-	0.02	14.6	0.9	0.32	10.7	0.7	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|300713119|ref|YP_003738931.1|	-	0.032	14.5	0.1	0.67	10.2	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|300713119|ref|YP_003738931.1|	-	0.037	14.3	0.1	0.42	10.9	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Rad17	PF03215.15	gi|300713119|ref|YP_003738931.1|	-	0.039	13.9	0.0	0.063	13.2	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA	PF00004.29	gi|300713119|ref|YP_003738931.1|	-	0.047	14.1	0.4	6.2	7.3	0.0	2.8	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_15	PF13175.6	gi|300713119|ref|YP_003738931.1|	-	0.047	13.4	0.0	0.12	12.1	0.0	1.7	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_24	PF13479.6	gi|300713119|ref|YP_003738931.1|	-	0.09	12.5	0.0	1.2	8.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.6	gi|300713119|ref|YP_003738931.1|	-	0.096	11.3	0.0	2.3	6.8	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|300713119|ref|YP_003738931.1|	-	0.1	12.7	0.1	0.54	10.4	0.0	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TsaE	PF02367.17	gi|300713119|ref|YP_003738931.1|	-	0.12	12.4	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
KAP_NTPase	PF07693.14	gi|300713119|ref|YP_003738931.1|	-	0.18	11.0	1.5	1.9	7.7	1.5	2.1	1	1	0	1	1	1	0	KAP	family	P-loop	domain
AAA_18	PF13238.6	gi|300713119|ref|YP_003738931.1|	-	0.19	12.3	0.5	1.5	9.3	0.5	2.3	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.16	gi|300713120|ref|YP_003738932.1|	-	4.2e-46	157.3	42.5	5.7e-46	156.9	42.5	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Pam17	PF08566.10	gi|300713120|ref|YP_003738932.1|	-	1.4	8.8	7.5	0.19	11.6	0.4	2.3	2	0	0	2	2	2	0	Mitochondrial	import	protein	Pam17
Peripla_BP_4	PF13407.6	gi|300713121|ref|YP_003738933.1|	-	1.1e-32	113.7	2.9	1.4e-32	113.3	2.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|300713121|ref|YP_003738933.1|	-	7.5e-06	25.6	5.0	1.5e-05	24.7	5.0	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peripla_BP_1	PF00532.21	gi|300713121|ref|YP_003738933.1|	-	0.0099	15.3	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
AP_endonuc_2	PF01261.24	gi|300713122|ref|YP_003738934.1|	-	3.6e-36	124.6	1.7	4.9e-36	124.2	1.0	1.5	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
UxuA	PF03786.13	gi|300713122|ref|YP_003738934.1|	-	0.0057	15.5	0.0	0.038	12.8	0.0	1.9	2	0	0	2	2	2	1	D-mannonate	dehydratase	(UxuA)
Hydrolase_like	PF13242.6	gi|300713122|ref|YP_003738934.1|	-	0.016	15.2	0.2	4.7	7.3	0.1	2.4	1	1	1	2	2	2	0	HAD-hyrolase-like
Ins_P5_2-kin	PF06090.12	gi|300713122|ref|YP_003738934.1|	-	0.032	13.7	0.1	0.045	13.2	0.1	1.1	1	0	0	1	1	1	0	Inositol-pentakisphosphate	2-kinase
Macro	PF01661.21	gi|300713122|ref|YP_003738934.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	Macro	domain
HTH_20	PF12840.7	gi|300713123|ref|YP_003738935.1|	-	0.0081	16.2	0.0	0.016	15.3	0.0	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|300713123|ref|YP_003738935.1|	-	0.039	13.9	0.0	0.047	13.6	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF4214	PF13946.6	gi|300713124|ref|YP_003738936.1|	-	0.11	12.6	0.1	0.42	10.7	0.1	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4214)
AP_endonuc_2	PF01261.24	gi|300713125|ref|YP_003738937.1|	-	5.1e-30	104.5	0.3	7.7e-30	103.9	0.3	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.12	gi|300713125|ref|YP_003738937.1|	-	0.094	12.4	0.0	0.3	10.8	0.0	1.9	1	0	0	1	1	1	0	AP	endonuclease	family	2	C	terminus
ADH_N	PF08240.12	gi|300713126|ref|YP_003738938.1|	-	2.7e-27	94.8	1.6	5.1e-27	93.9	1.6	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|300713126|ref|YP_003738938.1|	-	7.5e-21	74.5	0.0	1.2e-20	73.8	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|300713126|ref|YP_003738938.1|	-	5.2e-05	22.8	0.0	7.6e-05	22.3	0.0	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|300713126|ref|YP_003738938.1|	-	0.0032	18.5	0.0	0.0053	17.8	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_2	PF03446.15	gi|300713126|ref|YP_003738938.1|	-	0.018	15.2	0.0	0.035	14.3	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|300713126|ref|YP_003738938.1|	-	0.15	11.4	0.0	0.28	10.5	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AP_endonuc_2	PF01261.24	gi|300713127|ref|YP_003738939.1|	-	3.1e-37	128.1	1.6	4.8e-37	127.5	0.5	1.7	1	1	1	2	2	2	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.12	gi|300713127|ref|YP_003738939.1|	-	0.012	15.3	0.9	0.077	12.7	0.3	2.7	2	1	0	2	2	2	0	AP	endonuclease	family	2	C	terminus
Ferredoxin_N	PF16947.5	gi|300713127|ref|YP_003738939.1|	-	0.037	14.1	1.3	0.12	12.5	0.2	2.2	2	0	0	2	2	2	0	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
Peripla_BP_4	PF13407.6	gi|300713128|ref|YP_003738940.1|	-	2.1e-33	116.0	0.2	2.6e-33	115.7	0.2	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
Peripla_BP_6	PF13458.6	gi|300713128|ref|YP_003738940.1|	-	4.1e-05	23.4	0.8	0.029	14.0	0.1	2.0	1	1	1	2	2	2	2	Periplasmic	binding	protein
IclR	PF01614.18	gi|300713129|ref|YP_003738941.1|	-	1.8e-29	102.2	0.0	4.2e-29	101.0	0.0	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|300713129|ref|YP_003738941.1|	-	3.3e-12	46.0	0.1	6e-12	45.2	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|300713129|ref|YP_003738941.1|	-	1.7e-06	27.8	0.1	4.3e-06	26.5	0.1	1.7	2	0	0	2	2	1	1	MarR	family
MarR	PF01047.22	gi|300713129|ref|YP_003738941.1|	-	4.9e-06	26.4	0.0	1e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|300713129|ref|YP_003738941.1|	-	1.9e-05	24.1	0.0	4.1e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|300713129|ref|YP_003738941.1|	-	4.3e-05	23.9	0.1	9.8e-05	22.8	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|300713129|ref|YP_003738941.1|	-	6.2e-05	23.0	0.1	0.00019	21.4	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|300713129|ref|YP_003738941.1|	-	7.1e-05	22.6	0.0	0.00013	21.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|300713129|ref|YP_003738941.1|	-	0.00017	21.7	0.4	0.00057	20.0	0.1	2.0	3	0	0	3	3	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.19	gi|300713129|ref|YP_003738941.1|	-	0.0014	18.5	0.0	0.0035	17.2	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|300713129|ref|YP_003738941.1|	-	0.0088	16.0	0.5	0.021	14.8	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
HTH_34	PF13601.6	gi|300713129|ref|YP_003738941.1|	-	0.018	15.2	0.2	0.056	13.6	0.0	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|300713129|ref|YP_003738941.1|	-	0.049	13.6	0.1	0.13	12.3	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
RPA_C	PF08784.11	gi|300713129|ref|YP_003738941.1|	-	0.073	13.7	0.0	0.13	12.9	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
z-alpha	PF02295.17	gi|300713129|ref|YP_003738941.1|	-	0.12	12.5	0.1	0.27	11.3	0.0	1.6	2	0	0	2	2	2	0	Adenosine	deaminase	z-alpha	domain
FeoC	PF09012.10	gi|300713129|ref|YP_003738941.1|	-	0.14	12.3	0.0	0.26	11.4	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
Abhydrolase_1	PF00561.20	gi|300713130|ref|YP_003738942.1|	-	1.5e-20	74.0	0.0	2.1e-20	73.4	0.0	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|300713130|ref|YP_003738942.1|	-	7.2e-13	49.6	0.4	9.4e-13	49.3	0.4	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|300713130|ref|YP_003738942.1|	-	2.1e-06	27.2	0.3	4.5e-06	26.1	0.1	1.6	1	1	1	2	2	2	1	Serine	aminopeptidase,	S33
EHN	PF06441.12	gi|300713130|ref|YP_003738942.1|	-	0.14	12.5	0.0	0.45	10.9	0.0	1.8	1	0	0	1	1	1	0	Epoxide	hydrolase	N	terminus
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014299.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:11:12 2019
# [ok]